Citrus Sinensis ID: 001411
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
ID ![]() | Alignment graph ![]() | Length ![]() |
Definition ![]() |
RBH(Q2H) ![]() |
RBH(H2Q) ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 1082 | 2.2.26 [Sep-21-2011] | |||||||
| Q9C7F8 | 1245 | ABC transporter B family | yes | no | 0.988 | 0.859 | 0.710 | 0.0 | |
| Q9C7F2 | 1247 | ABC transporter B family | no | no | 0.991 | 0.860 | 0.697 | 0.0 | |
| Q9LJX0 | 1252 | ABC transporter B family | no | no | 0.990 | 0.856 | 0.516 | 0.0 | |
| Q8LPK2 | 1273 | ABC transporter B family | no | no | 0.987 | 0.839 | 0.511 | 0.0 | |
| Q9SGY1 | 1227 | ABC transporter B family | no | no | 0.975 | 0.860 | 0.497 | 0.0 | |
| Q9ZR72 | 1286 | ABC transporter B family | no | no | 0.988 | 0.832 | 0.515 | 0.0 | |
| Q9LSJ6 | 1240 | ABC transporter B family | no | no | 0.975 | 0.851 | 0.443 | 0.0 | |
| Q9LHD1 | 1240 | ABC transporter B family | no | no | 0.975 | 0.850 | 0.456 | 0.0 | |
| Q9LSJ5 | 1225 | ABC transporter B family | no | no | 0.960 | 0.848 | 0.441 | 0.0 | |
| Q6YUU5 | 1245 | Putative multidrug resist | no | no | 0.984 | 0.855 | 0.451 | 0.0 |
| >sp|Q9C7F8|AB13B_ARATH ABC transporter B family member 13 OS=Arabidopsis thaliana GN=ABCB13 PE=3 SV=1 | Back alignment and function desciption |
|---|
Score = 1573 bits (4072), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 767/1079 (71%), Positives = 906/1079 (83%), Gaps = 9/1079 (0%)
Query: 2 QTGHALRYLSQFFVGFAVGFTSVWQLTLLTLAVVPLIAVAGGAYTITMSTLSEKGEAAYG 61
+T H LRYLSQF GF +GF SVWQLTLLTL VVPLIA+AGG Y I MST+SEK E AY
Sbjct: 168 KTDHVLRYLSQFIAGFVIGFLSVWQLTLLTLGVVPLIAIAGGGYAIVMSTISEKSETAYA 227
Query: 62 EAGKVAEEIISQVRAVYAFVGEAKAIESYSHSLKEALKQGKKSGVAKGIGVGLTYGLLFC 121
+AGKVAEE++SQVR VYAFVGE KA++SYS+SLK+ALK GK+SG+AKG+GVGLTY LLFC
Sbjct: 228 DAGKVAEEVMSQVRTVYAFVGEEKAVKSYSNSLKKALKLGKRSGLAKGLGVGLTYSLLFC 287
Query: 122 AWALLLWYAGILVRHGDTNGGKAFTTIINVIFSGFALGQAAPNLAAIAKGKAAAANIISI 181
AWALLLWYA +LVRHG TNG KAFTTI+NVIFSGFALGQAAP+L+AIAKG+ AAANI +
Sbjct: 288 AWALLLWYASLLVRHGKTNGAKAFTTILNVIFSGFALGQAAPSLSAIAKGRVAAANIFRM 347
Query: 182 IKENSHSSERPGDDGITLPKLAGQIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGP 241
I N+ S + D+G TL +AG+IEF +V FAYPSRP+MVFENL+F++ +GKTFAFVGP
Sbjct: 348 IGNNNSESSQRLDEGTTLQNVAGRIEFQKVSFAYPSRPNMVFENLSFTIRSGKTFAFVGP 407
Query: 242 SGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNI 301
SGSGKSTIISMVQR YEP SG+ILLDG+D+KSL+LKW REQ+GLVSQEPALFAT+IA+NI
Sbjct: 408 SGSGKSTIISMVQRFYEPNSGEILLDGNDIKSLKLKWFREQLGLVSQEPALFATTIASNI 467
Query: 302 LLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRN 361
LLGKE+A+MD++IEAAKAANA SF++ LP+GY TQVGEGGTQLSGGQKQRIAIARAVLRN
Sbjct: 468 LLGKENANMDQIIEAAKAANADSFIKSLPNGYNTQVGEGGTQLSGGQKQRIAIARAVLRN 527
Query: 362 PKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRDVDTIMVLKNGQVVE 421
PKILLLDEATSALDAESE IVQ+AL+ +M RTTIVVAHRLST+R+VD I+VL++GQV E
Sbjct: 528 PKILLLDEATSALDAESEKIVQQALDNVMEKRTTIVVAHRLSTIRNVDKIVVLRDGQVRE 587
Query: 422 SGTHVDLISKGGEYAALVNLQSSEHLSNPSSI----CYS--GSSRYSSFRDFPSSRRYDV 475
+G+H +L+ +GG+YA LVN Q +E N SI C S GSS + + V
Sbjct: 588 TGSHSELMLRGGDYATLVNCQETEPQENSRSIMSETCKSQAGSSSSRRVSSSRRTSSFRV 647
Query: 476 EFESSKRRELQSSDQSFAPSPSIWELLKLNAAEWPYAVLGSVGAILAGMEAPLFALGITH 535
+ E +K + + S S IWEL+KLN+ EWPYA+LGS+GA+LAG + PLF++GI +
Sbjct: 648 DQEKTKNDDSKKDFSS---SSMIWELIKLNSPEWPYALLGSIGAVLAGAQTPLFSMGIAY 704
Query: 536 ILTAFYSPHDSQIKRVVDQVALIFVGLAVVTIPVYLLQHYFYTLMGEHLTARVRLSMFSA 595
+LTAFYSP + IKR V++VA+IF G +VT P+YLLQHYFYTLMGE LT+RVRLS+FSA
Sbjct: 705 VLTAFYSPFPNVIKRDVEKVAIIFAGAGIVTAPIYLLQHYFYTLMGERLTSRVRLSLFSA 764
Query: 596 ILSNEIGWFDLDENNTGLLISTLAADATLVRSALADRLSIIVQNVALTVTAFVIAFILSW 655
ILSNEIGWFDLDENNTG L S LAADATLVRSALADRLS IVQN++LTVTA +AF SW
Sbjct: 765 ILSNEIGWFDLDENNTGSLTSILAADATLVRSALADRLSTIVQNLSLTVTALALAFFYSW 824
Query: 656 RLAAVVAASLPLLIGAFVAEQLFLKGFGGDYNRAYSRATSVAREAIANIRTVAAYGIEKR 715
R+AAVV A PLLI A + EQLFLKGFGGDY RAYSRATSVAREAIANIRTVAAYG EK+
Sbjct: 825 RVAAVVTACFPLLIAASLTEQLFLKGFGGDYTRAYSRATSVAREAIANIRTVAAYGAEKQ 884
Query: 716 ISIQFASELSQPNKQALLRGHISGFGYGVSQLLSLCSYALGLWYASVLIKQKGSNFGDIM 775
IS QF ELS+P K A +RGHISGFGYG+SQ L+ CSYALGLWY SVLI K +NFGD +
Sbjct: 885 ISEQFTCELSKPTKNAFVRGHISGFGYGLSQFLAFCSYALGLWYVSVLINHKETNFGDSI 944
Query: 776 KSFMVLIITALAVAETLALAPDIVKGSQALGPVFGILYRKTAIQPDDPASKEVTEIKGNI 835
KSFMVLI+TA +V+ETLAL PDIVKG+QALG VF +L+R+T I PD P S+ V+++KG+I
Sbjct: 945 KSFMVLIVTAFSVSETLALTPDIVKGTQALGSVFRVLHRETKISPDQPNSRMVSQVKGDI 1004
Query: 836 ELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVL 895
E RNVSF YP RP+I IF+NLNL+VSAG+SLAVVG SGSGKSTVI L+MRFYDP +G +
Sbjct: 1005 EFRNVSFVYPTRPEIDIFKNLNLRVSAGKSLAVVGPSGSGKSTVIGLIMRFYDPSNGNLC 1064
Query: 896 IDGYDIRTLNLRSLRRKIGLVQQEPALFSTTIYENIKYGNEDASEIELMKATKAANAHGF 955
IDG DI+TLNLRSLR+K+ LVQQEPALFSTTIYENIKYGNE+ASE E+M+A KAANAH F
Sbjct: 1065 IDGQDIKTLNLRSLRKKLALVQQEPALFSTTIYENIKYGNENASEAEIMEAAKAANAHEF 1124
Query: 956 ISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEA 1015
I +M EGY++H GD+GVQLSGGQKQRVAIARA+LK+PS+LLLDEATSALDT+SE L+QEA
Sbjct: 1125 IIKMEEGYKTHAGDKGVQLSGGQKQRVAIARAVLKDPSVLLLDEATSALDTSSEKLVQEA 1184
Query: 1016 LDKLMEGRTTIMVAHRLSTIRNADKIAVLQQGKVAEIGSHEQLLRKENGIYKQLIRLQQ 1074
LDKLM+GRTT++VAHRLSTIR AD +AVL +G+V E GSH +L+ NG YKQL LQ+
Sbjct: 1185 LDKLMKGRTTVLVAHRLSTIRKADTVAVLHKGRVVEKGSHRELVSIPNGFYKQLTSLQE 1243
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9C7F2|AB14B_ARATH ABC transporter B family member 14 OS=Arabidopsis thaliana GN=ABCB14 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 1535 bits (3974), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 751/1077 (69%), Positives = 894/1077 (83%), Gaps = 4/1077 (0%)
Query: 2 QTGHALRYLSQFFVGFAVGFTSVWQLTLLTLAVVPLIAVAGGAYTITMSTLSEKGEAAYG 61
+TGH LRYL QF GF +GF SVWQLTLLTL VVPLIA+AGG Y I MST+SEK EAAY
Sbjct: 169 KTGHVLRYLCQFIAGFVIGFLSVWQLTLLTLGVVPLIAIAGGGYAIVMSTISEKSEAAYA 228
Query: 62 EAGKVAEEIISQVRAVYAFVGEAKAIESYSHSLKEALKQGKKSGVAKGIGVGLTYGLLFC 121
+AGKVAEE++SQVR VYAFVGE KA++SYS+SLK+ALK K+SG+AKG+GVGLTY LLFC
Sbjct: 229 DAGKVAEEVMSQVRTVYAFVGEEKAVKSYSNSLKKALKLSKRSGLAKGLGVGLTYSLLFC 288
Query: 122 AWALLLWYAGILVRHGDTNGGKAFTTIINVIFSGFALGQAAPNLAAIAKGKAAAANIISI 181
AWALL WYA +LVRHG TNG KAFTTI+NVI+SGFALGQA P+L+AI+KG+ AAANI +
Sbjct: 289 AWALLFWYASLLVRHGKTNGAKAFTTILNVIYSGFALGQAVPSLSAISKGRVAAANIFKM 348
Query: 182 IKENSHSSERPGDDGITLPKLAGQIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGP 241
I N+ S ++G TL + G+IEF V FAYPSRP+MVFENL+F++ +GKTFAFVGP
Sbjct: 349 IGNNNLESSERLENGTTLQNVVGKIEFCGVSFAYPSRPNMVFENLSFTIHSGKTFAFVGP 408
Query: 242 SGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNI 301
SGSGKSTIISMVQR YEP SG+ILLDG+D+K+L+LKWLREQMGLVSQEPALFAT+IA+NI
Sbjct: 409 SGSGKSTIISMVQRFYEPRSGEILLDGNDIKNLKLKWLREQMGLVSQEPALFATTIASNI 468
Query: 302 LLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRN 361
LLGKE A+MD++IEAAKAANA SF++ LP+GY TQVGEGGTQLSGGQKQRIAIARAVLRN
Sbjct: 469 LLGKEKANMDQIIEAAKAANADSFIKSLPNGYNTQVGEGGTQLSGGQKQRIAIARAVLRN 528
Query: 362 PKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRDVDTIMVLKNGQVVE 421
PKILLLDEATSALDAESE IVQ+AL+ +M RTTIV+AHRLST+R+VD I+VL++GQV E
Sbjct: 529 PKILLLDEATSALDAESEKIVQQALDNVMEKRTTIVIAHRLSTIRNVDKIVVLRDGQVRE 588
Query: 422 SGTHVDLISKGGEYAALVNLQSSEHLSNPSSICYSGSSRYSSFRDFPSSRRYDVEF---E 478
+G+H +LIS+GG+YA LVN Q +E N S+ Y + E
Sbjct: 589 TGSHSELISRGGDYATLVNCQDTEPQENLRSVMYESCRSQAGSYSSRRVFSSRRTSSFRE 648
Query: 479 SSKRRELQSSDQSFAPSPS-IWELLKLNAAEWPYAVLGSVGAILAGMEAPLFALGITHIL 537
++ E S + S S IWEL+KLNA EW YA+LGS+GA+LAG + LF++G+ ++L
Sbjct: 649 DQEKTEKDSKGEDLISSSSMIWELIKLNAPEWLYALLGSIGAVLAGSQPALFSMGLAYVL 708
Query: 538 TAFYSPHDSQIKRVVDQVALIFVGLAVVTIPVYLLQHYFYTLMGEHLTARVRLSMFSAIL 597
T FYSP S IKR VD+VA+IFVG +VT P+Y+LQHYFYTLMGE LT+RVRLS+FSAIL
Sbjct: 709 TTFYSPFPSLIKREVDKVAIIFVGAGIVTAPIYILQHYFYTLMGERLTSRVRLSLFSAIL 768
Query: 598 SNEIGWFDLDENNTGLLISTLAADATLVRSALADRLSIIVQNVALTVTAFVIAFILSWRL 657
SNEIGWFDLDENNTG L S LAADATLVRSA+ADRLS IVQN++LT+TA +AF SWR+
Sbjct: 769 SNEIGWFDLDENNTGSLTSILAADATLVRSAIADRLSTIVQNLSLTITALALAFFYSWRV 828
Query: 658 AAVVAASLPLLIGAFVAEQLFLKGFGGDYNRAYSRATSVAREAIANIRTVAAYGIEKRIS 717
AAVV A PLLI A + EQLFLKGFGGDY RAYSRATS+AREAI+NIRTVAA+ EK+IS
Sbjct: 829 AAVVTACFPLLIAASLTEQLFLKGFGGDYTRAYSRATSLAREAISNIRTVAAFSAEKQIS 888
Query: 718 IQFASELSQPNKQALLRGHISGFGYGVSQLLSLCSYALGLWYASVLIKQKGSNFGDIMKS 777
QF ELS+P K ALLRGHISGFGYG+SQ L+ CSYALGLWY SVLIK+ +NF D +KS
Sbjct: 889 EQFTCELSKPTKSALLRGHISGFGYGLSQCLAFCSYALGLWYISVLIKRNETNFEDSIKS 948
Query: 778 FMVLIITALAVAETLALAPDIVKGSQALGPVFGILYRKTAIQPDDPASKEVTEIKGNIEL 837
FMVL++TA +VAETLAL PDIVKG+QALG VF +L+R+T I PD P S+ VT IKG+IE
Sbjct: 949 FMVLLVTAYSVAETLALTPDIVKGTQALGSVFRVLHRETEIPPDQPNSRLVTHIKGDIEF 1008
Query: 838 RNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLID 897
RNVSF YP RP+I IF+NLNL+VSAG+SLAVVG SGSGKSTVI L+MRFYDP +G + ID
Sbjct: 1009 RNVSFAYPTRPEIAIFKNLNLRVSAGKSLAVVGPSGSGKSTVIGLIMRFYDPSNGNLCID 1068
Query: 898 GYDIRTLNLRSLRRKIGLVQQEPALFSTTIYENIKYGNEDASEIELMKATKAANAHGFIS 957
G+DI+++NLRSLR+K+ LVQQEPALFST+I+ENIKYGNE+ASE E+++A KAANAH FIS
Sbjct: 1069 GHDIKSVNLRSLRKKLALVQQEPALFSTSIHENIKYGNENASEAEIIEAAKAANAHEFIS 1128
Query: 958 RMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEALD 1017
RM EGY +HVGD+GVQLSGGQKQRVAIARA+LK+PS+LLLDEATSALDT++E +QEALD
Sbjct: 1129 RMEEGYMTHVGDKGVQLSGGQKQRVAIARAVLKDPSVLLLDEATSALDTSAEKQVQEALD 1188
Query: 1018 KLMEGRTTIMVAHRLSTIRNADKIAVLQQGKVAEIGSHEQLLRKENGIYKQLIRLQQ 1074
KLM+GRTTI+VAHRLSTIR AD I VL +GKV E GSH +L+ K +G YK+L LQ+
Sbjct: 1189 KLMKGRTTILVAHRLSTIRKADTIVVLHKGKVVEKGSHRELVSKSDGFYKKLTSLQE 1245
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LJX0|AB19B_ARATH ABC transporter B family member 19 OS=Arabidopsis thaliana GN=ABCB19 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 1129 bits (2920), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 565/1093 (51%), Positives = 790/1093 (72%), Gaps = 21/1093 (1%)
Query: 2 QTGHALRYLSQFFVGFAVGFTSVWQLTLLTLAVVPLIAVAGGAYTITMSTLSEKGEAAYG 61
+ G+ + YLS F G VGF S W+L LL++AV+P IA AGG Y T++ ++ K +Y
Sbjct: 162 KVGNFIHYLSTFLAGLVVGFVSAWKLALLSVAVIPGIAFAGGLYAYTLTGITSKSRESYA 221
Query: 62 EAGKVAEEIISQVRAVYAFVGEAKAIESYSHSLKEALKQGKKSGVAKGIGVGLTYGLLFC 121
AG +AE+ I+QVR VY++VGE+KA+ +YS +++ LK G K+G+AKG+G+G TYG+
Sbjct: 222 NAGVIAEQAIAQVRTVYSYVGESKALNAYSDAIQYTLKLGYKAGMAKGLGLGCTYGIACM 281
Query: 122 AWALLLWYAGILVRHGDTNGGKAFTTIINVIFSGFALGQAAPNLAAIAKGKAAAANIISI 181
+WAL+ WYAG+ +R+G T+GGKAFT I + I G +LGQ+ NL A +KGKAA ++ I
Sbjct: 282 SWALVFWYAGVFIRNGQTDGGKAFTAIFSAIVGGMSLGQSFSNLGAFSKGKAAGYKLMEI 341
Query: 182 IKENSHSSERPGDDGITLPKLAGQIEFSEVCFAYPSRPH-MVFENLNFSVDAGKTFAFVG 240
I + + P DG L ++ G IEF +V F+YPSRP M+F N N +GKT A VG
Sbjct: 342 INQRPTIIQDP-LDGKCLDQVHGNIEFKDVTFSYPSRPDVMIFRNFNIFFPSGKTVAVVG 400
Query: 241 PSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGLVSQEPALFATSIANN 300
SGSGKST++S+++R Y+P SG+ILLDG ++K+LQLK+LREQ+GLV+QEPALFAT+I N
Sbjct: 401 GSGSGKSTVVSLIERFYDPNSGQILLDGVEIKTLQLKFLREQIGLVNQEPALFATTILEN 460
Query: 301 ILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLR 360
IL GK DA+M V AA AANAHSF+ LP GY TQVGE G QLSGGQKQRIAIARA+L+
Sbjct: 461 ILYGKPDATMVEVEAAASAANAHSFITLLPKGYDTQVGERGVQLSGGQKQRIAIARAMLK 520
Query: 361 NPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRDVDTIMVLKNGQVV 420
+PKILLLDEATSALDA SE IVQ AL+++M RTT+VVAHRL T+R+VD+I V++ GQVV
Sbjct: 521 DPKILLLDEATSALDASSESIVQEALDRVMVGRTTVVVAHRLCTIRNVDSIAVIQQGQVV 580
Query: 421 ESGTHVDLISKGGEYAALVNLQS---SEHLSNPSS-------ICYSGSSRYSSFRDFPSS 470
E+GTH +LI+K G YA+L+ Q + SNPS+ + +S S++ S R S
Sbjct: 581 ETGTHEELIAKSGAYASLIRFQEMVGTRDFSNPSTRRTRSTRLSHSLSTKSLSLRS--GS 638
Query: 471 RR---YDVEFESSKRREL----QSSDQSFAPSPSIWELLKLNAAEWPYAVLGSVGAILAG 523
R Y + R E+ ++ ++ AP + LLKLN+ EWPY+++G+VG+IL+G
Sbjct: 639 LRNLSYSYSTGADGRIEMISNAETDRKTRAPENYFYRLLKLNSPEWPYSIMGAVGSILSG 698
Query: 524 MEAPLFALGITHILTAFYSPHDSQIKRVVDQVALIFVGLAVVTIPVYLLQHYFYTLMGEH 583
P FA+ +++++ FY ++R + I++G + + YL+QHYF+++MGE+
Sbjct: 699 FIGPTFAIVMSNMIEVFYYTDYDSMERKTKEYVFIYIGAGLYAVGAYLIQHYFFSIMGEN 758
Query: 584 LTARVRLSMFSAILSNEIGWFDLDENNTGLLISTLAADATLVRSALADRLSIIVQNVALT 643
LT RVR M SAIL NE+GWFD DE+N+ L+ + LA DA V+SA+A+R+S+I+QN+
Sbjct: 759 LTTRVRRMMLSAILRNEVGWFDEDEHNSSLIAARLATDAADVKSAIAERISVILQNMTSL 818
Query: 644 VTAFVIAFILSWRLAAVVAASLPLLIGAFVAEQLFLKGFGGDYNRAYSRATSVAREAIAN 703
+T+F++AFI+ WR++ ++ + PLL+ A A+QL LKGF GD +A+++ + +A E ++N
Sbjct: 819 LTSFIVAFIVEWRVSLLILGTFPLLVLANFAQQLSLKGFAGDTAKAHAKTSMIAGEGVSN 878
Query: 704 IRTVAAYGIEKRISIQFASELSQPNKQALLRGHISGFGYGVSQLLSLCSYALGLWYASVL 763
IRTVAA+ + +I F EL P K++L R SGF +G+SQL S AL LWY + L
Sbjct: 879 IRTVAAFNAQSKILSLFCHELRVPQKRSLYRSQTSGFLFGLSQLALYGSEALILWYGAHL 938
Query: 764 IKQKGSNFGDIMKSFMVLIITALAVAETLALAPDIVKGSQALGPVFGILYRKTAIQPDDP 823
+ + S F ++K F+VL+ITA +VAET++LAP+I++G +A+G VF +L R+T I PDD
Sbjct: 939 VSKGVSTFSKVIKVFVVLVITANSVAETVSLAPEIIRGGEAVGSVFSVLDRQTRIDPDDA 998
Query: 824 ASKEVTEIKGNIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLV 883
+ V I+G+IE R+V F YP RPD+ +F + NL++ AG S A+VG SGSGKS+VI+++
Sbjct: 999 DADPVETIRGDIEFRHVDFAYPSRPDVMVFRDFNLRIRAGHSQALVGASGSGKSSVIAMI 1058
Query: 884 MRFYDPISGTVLIDGYDIRTLNLRSLRRKIGLVQQEPALFSTTIYENIKYGNEDASEIEL 943
RFYDP++G V+IDG DIR LNL+SLR KIGLVQQEPALF+ TI++NI YG + A+E E+
Sbjct: 1059 ERFYDPLAGKVMIDGKDIRRLNLKSLRLKIGLVQQEPALFAATIFDNIAYGKDGATESEV 1118
Query: 944 MKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSA 1003
+ A +AANAHGFIS +PEGY++ VG+RGVQLSGGQKQR+AIARA+LKNP++LLLDEATSA
Sbjct: 1119 IDAARAANAHGFISGLPEGYKTPVGERGVQLSGGQKQRIAIARAVLKNPTVLLLDEATSA 1178
Query: 1004 LDTASENLIQEALDKLMEGRTTIMVAHRLSTIRNADKIAVLQQGKVAEIGSHEQLLRKEN 1063
LD SE ++QEAL++LM GRTT++VAHRLSTIR D I V+Q G++ E GSH +L+ +
Sbjct: 1179 LDAESECVLQEALERLMRGRTTVVVAHRLSTIRGVDCIGVIQDGRIVEQGSHSELVSRPE 1238
Query: 1064 GIYKQLIRLQQDK 1076
G Y +L++LQ +
Sbjct: 1239 GAYSRLLQLQTHR 1251
|
Auxin efflux transporter that acts as a negative regulator of light signaling to promote hypocotyl elongation. Mediates the accumulation of chlorophyll and anthocyanin, as well as the expression of genes in response to light. Participates in auxin efflux and thus regulates the polar auxin basipetal transport (from auxin-producing leaves to auxin-sensitive tissues, and from root tips to root elongating zone). Involved in divers auxin-mediated responses including gravitropism, phototropism and lateral root formation. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q8LPK2|AB2B_ARATH ABC transporter B family member 2 OS=Arabidopsis thaliana GN=ABCB2 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 1118 bits (2893), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 554/1084 (51%), Positives = 785/1084 (72%), Gaps = 15/1084 (1%)
Query: 2 QTGHALRYLSQFFVGFAVGFTSVWQLTLLTLAVVPLIAVAGGAYTITMSTLSEKGEAAYG 61
+ G+ L Y+S+F GFA+GFTSVWQ++L+TL++VPLIA+AGG Y L + +Y
Sbjct: 198 KVGNFLHYISRFIAGFAIGFTSVWQISLVTLSIVPLIALAGGIYAFVAIGLIARVRKSYI 257
Query: 62 EAGKVAEEIISQVRAVYAFVGEAKAIESYSHSLKEALKQGKKSGVAKGIGVGLTYGLLFC 121
+AG++AEE+I VR V AF GE +A+ Y +L+ K G+K+G+ KG+G+G + +LF
Sbjct: 258 KAGEIAEEVIGNVRTVQAFTGEERAVRLYREALENTYKYGRKAGLTKGLGLGSMHCVLFL 317
Query: 122 AWALLLWYAGILVRHGDTNGGKAFTTIINVIFSGFALGQAAPNLAAIAKGKAAAANIISI 181
+WALL+W+ ++V +GGK+FTT++NV+ +G +LGQAAP+++A + KAAA I +
Sbjct: 318 SWALLVWFTSVVVHKDIADGGKSFTTMLNVVIAGLSLGQAAPDISAFVRAKAAAYPIFKM 377
Query: 182 IKENSHSSERPGDDGITLPKLAGQIEFSEVCFAYPSRPHMV-FENLNFSVDAGKTFAFVG 240
I+ N+ ++ G L K+ G I+F + F+YPSRP +V F+ LN ++ AGK A VG
Sbjct: 378 IERNT-VTKTSAKSGRKLGKVDGHIQFKDATFSYPSRPDVVIFDRLNLAIPAGKIVALVG 436
Query: 241 PSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGLVSQEPALFATSIANN 300
SGSGKST+IS+++R YEP SG +LLDG+++ L +KWLR Q+GLV+QEPALFAT+I N
Sbjct: 437 GSGSGKSTVISLIERFYEPISGAVLLDGNNISELDIKWLRGQIGLVNQEPALFATTIREN 496
Query: 301 ILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLR 360
IL GK+DA+ + + AAK + A SF+ LP+G++TQVGE G QLSGGQKQRIAI+RA+++
Sbjct: 497 ILYGKDDATAEEITRAAKLSEAISFINNLPEGFETQVGERGIQLSGGQKQRIAISRAIVK 556
Query: 361 NPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRDVDTIMVLKNGQVV 420
NP ILLLDEATSALDAESE VQ AL+++M RTT+VVAHRLSTVR+ D I V+ G++V
Sbjct: 557 NPSILLLDEATSALDAESEKSVQEALDRVMVGRTTVVVAHRLSTVRNADIIAVVHEGKIV 616
Query: 421 ESGTHVDLISK-GGEYAALVNLQSSEHLS-NPS---SICYSGSSRYSSFRDFPSSRR-YD 474
E G H +LIS G Y++L+ LQ + L NPS ++ S +YS R+ +R +
Sbjct: 617 EFGNHENLISNPDGAYSSLLRLQETASLQRNPSLNRTLSRPHSIKYS--RELSRTRSSFC 674
Query: 475 VEFESSKRRELQSSDQSFAPSPSIWELLKLNAAEWPYAVLGSVGAILAGMEAPLFALGIT 534
E ES R + +D S ++ L + +W Y V G++ A +AG + PLFALG++
Sbjct: 675 SERESVTRPD--GADPSKKVKVTVGRLYSMIRPDWMYGVCGTICAFIAGSQMPLFALGVS 732
Query: 535 HILTAFYSPHDSQIKRVVDQVALIFVGLAVVTIPVYLLQHYFYTLMGEHLTARVRLSMFS 594
L ++YS D + ++ + ++A++F +V+T+ VY ++H + MGE LT RVR +MF
Sbjct: 733 QALVSYYSGWD-ETQKEIKKIAILFCCASVITLIVYTIEHICFGTMGERLTLRVRENMFR 791
Query: 595 AILSNEIGWFDLDENNTGLLISTLAADATLVRSALADRLSIIVQNVALTVTAFVIAFILS 654
AIL NEIGWFD +N + +L S L +DATL+++ + DR +I++QN+ L VT+F+IAFIL+
Sbjct: 792 AILKNEIGWFDEVDNTSSMLASRLESDATLLKTIVVDRSTILLQNLGLVVTSFIIAFILN 851
Query: 655 WRLAAVVAASLPLLIGAFVAEQLFLKGFGGDYNRAYSRATSVAREAIANIRTVAAYGIEK 714
WRL VV A+ PL+I ++E+LF++G+GGD N+AY +A +A E+++NIRTVAA+ E+
Sbjct: 852 WRLTLVVLATYPLVISGHISEKLFMQGYGGDLNKAYLKANMLAGESVSNIRTVAAFCAEE 911
Query: 715 RISIQFASELSQPNKQALLRGHISGFGYGVSQLLSLCSYALGLWYASVLIKQKGSNFGDI 774
+I ++ EL +P+K + RG I+G YGVSQ SY L LWY S L+ + + F +
Sbjct: 912 KILELYSRELLEPSKSSFRRGQIAGLFYGVSQFFIFSSYGLALWYGSTLMDKGLAGFKSV 971
Query: 775 MKSFMVLIITALAVAETLALAPDIVKGSQALGPVFGILYRKTAIQPDDPASKEVTEIKGN 834
MK+FMVLI+TALA+ ETLALAPD++KG+Q + VF IL RKT I + S+E+ ++G
Sbjct: 972 MKTFMVLIVTALAMGETLALAPDLLKGNQMVASVFEILDRKTQIVGE--TSEELNNVEGT 1029
Query: 835 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTV 894
IEL+ V F YP RPD+ IF + +L V AG+S+A+VGQSGSGKS+VISL++RFYDP +G V
Sbjct: 1030 IELKGVHFSYPSRPDVVIFRDFDLIVRAGKSMALVGQSGSGKSSVISLILRFYDPTAGKV 1089
Query: 895 LIDGYDIRTLNLRSLRRKIGLVQQEPALFSTTIYENIKYGNEDASEIELMKATKAANAHG 954
+I+G DI+ L+L++LR+ IGLVQQEPALF+TTIYENI YGNE AS+ E++++ ANAH
Sbjct: 1090 MIEGKDIKKLDLKALRKHIGLVQQEPALFATTIYENILYGNEGASQSEVVESAMLANAHS 1149
Query: 955 FISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQE 1014
FI+ +PEGY + VG+RGVQ+SGGQ+QR+AIARAILKNP+ILLLDEATSALD SE ++Q+
Sbjct: 1150 FITSLPEGYSTKVGERGVQMSGGQRQRIAIARAILKNPAILLLDEATSALDVESERVVQQ 1209
Query: 1015 ALDKLMEGRTTIMVAHRLSTIRNADKIAVLQQGKVAEIGSHEQLLRKENGIYKQLIRLQQ 1074
ALD+LM RTT++VAHRLSTI+NAD I+VL GK+ E GSH +L+ ++G Y +LI LQQ
Sbjct: 1210 ALDRLMANRTTVVVAHRLSTIKNADTISVLHGGKIVEQGSHRKLVLNKSGPYFKLISLQQ 1269
Query: 1075 DKNP 1078
+ P
Sbjct: 1270 QQQP 1273
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SGY1|AB10B_ARATH ABC transporter B family member 10 OS=Arabidopsis thaliana GN=ABCB10 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 1095 bits (2832), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 536/1077 (49%), Positives = 771/1077 (71%), Gaps = 21/1077 (1%)
Query: 2 QTGHALRYLSQFFVGFAVGFTSVWQLTLLTLAVVPLIAVAGGAYTITMSTLSEKGEAAYG 61
+ G+ + ++S+F GFA+GF SVWQ++L+TL++VP IA+AGG Y S L + +Y
Sbjct: 162 KVGNFMHFISRFIAGFAIGFASVWQISLVTLSIVPFIALAGGIYAFVSSGLIVRVRKSYV 221
Query: 62 EAGKVAEEIISQVRAVYAFVGEAKAIESYSHSLKEALKQGKKSGVAKGIGVGLTYGLLFC 121
+A ++AEE+I VR V AF GE KA+ SY +L+ G+K+G+AKG+G+G + +LF
Sbjct: 222 KANEIAEEVIGNVRTVQAFTGEEKAVSSYQGALRNTYNYGRKAGLAKGLGLGSLHFVLFL 281
Query: 122 AWALLLWYAGILVRHGDTNGGKAFTTIINVIFSGFALGQAAPNLAAIAKGKAAAANIISI 181
+WALL+W+ I+V G NGG++FTT++NV+ +G +LGQAAP+++ + AAA I +
Sbjct: 282 SWALLIWFTSIVVHKGIANGGESFTTMLNVVIAGLSLGQAAPDISTFMRASAAAYPIFQM 341
Query: 182 IKENSHSSERPGDDGITLPKLAGQIEFSEVCFAYPSRPHMV-FENLNFSVDAGKTFAFVG 240
I+ N+ G L + G I F +V F YPSRP +V F+ LNF + AGK A VG
Sbjct: 342 IERNTEDK-----TGRKLGNVNGDILFKDVTFTYPSRPDVVIFDKLNFVIPAGKVVALVG 396
Query: 241 PSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGLVSQEPALFATSIANN 300
SGSGKST+IS+++R YEPT G ++LDG+D++ L LKWLR +GLV+QEP LFAT+I N
Sbjct: 397 GSGSGKSTMISLIERFYEPTDGAVMLDGNDIRYLDLKWLRGHIGLVNQEPVLFATTIREN 456
Query: 301 ILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLR 360
I+ GK+DA+ + + AAK + A SF+ LP+G++TQVGE G QLSGGQKQRI+I+RA+++
Sbjct: 457 IMYGKDDATSEEITNAAKLSEAISFINNLPEGFETQVGERGIQLSGGQKQRISISRAIVK 516
Query: 361 NPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRDVDTIMVLKNGQVV 420
NP ILLLDEATSALDAESE IVQ AL+++M RTT+VVAHRLSTVR+ D I V+ G+++
Sbjct: 517 NPSILLLDEATSALDAESEKIVQEALDRVMVGRTTVVVAHRLSTVRNADIIAVVGGGKII 576
Query: 421 ESGTHVDLISK-GGEYAALVNLQ--SSEHLSNPSSICYSGSSRYSSFRDFPSSRRYDVEF 477
ESG+H +LIS G Y++L+ +Q +S +L++ S+ S P E
Sbjct: 577 ESGSHDELISNPDGAYSSLLRIQEAASPNLNHTPSLPVSTK---------PLPELPITET 627
Query: 478 ESSKRRELQSSDQSFAPSPSIWELLKLNAAEWPYAVLGSVGAILAGMEAPLFALGITHIL 537
SS + + D + ++ L + +W Y + G++G+ +AG + PLFALGI L
Sbjct: 628 TSSIHQSVNQPDTTKQAKVTVGRLYSMIRPDWKYGLCGTLGSFIAGSQMPLFALGIAQAL 687
Query: 538 TAFYSPHDSQIKRVVDQVALIFVGLAVVTIPVYLLQHYFYTLMGEHLTARVRLSMFSAIL 597
++Y ++ + V +++++F +V+T+ V+ ++H + +MGE LT RVR MFSAIL
Sbjct: 688 VSYYMDWETT-QNEVKRISILFCCGSVITVIVHTIEHTTFGIMGERLTLRVRQKMFSAIL 746
Query: 598 SNEIGWFDLDENNTGLLISTLAADATLVRSALADRLSIIVQNVALTVTAFVIAFILSWRL 657
NEIGWFD +N + +L S L +DATL+R+ + DR +I+++N+ L VTAF+I+FIL+WRL
Sbjct: 747 RNEIGWFDKVDNTSSMLASRLESDATLLRTIVVDRSTILLENLGLVVTAFIISFILNWRL 806
Query: 658 AAVVAASLPLLIGAFVAEQLFLKGFGGDYNRAYSRATSVAREAIANIRTVAAYGIEKRIS 717
VV A+ PL+I ++E++F++G+GG+ ++AY +A +A E+I+NIRTV A+ E+++
Sbjct: 807 TLVVLATYPLIISGHISEKIFMQGYGGNLSKAYLKANMLAGESISNIRTVVAFCAEEKVL 866
Query: 718 IQFASELSQPNKQALLRGHISGFGYGVSQLLSLCSYALGLWYASVLIKQKGSNFGDIMKS 777
++ EL +P++++ RG ++G YGVSQ SY L LWY S+L+++ S+F +MK+
Sbjct: 867 DLYSKELLEPSERSFRRGQMAGILYGVSQFFIFSSYGLALWYGSILMEKGLSSFESVMKT 926
Query: 778 FMVLIITALAVAETLALAPDIVKGSQALGPVFGILYRKTAIQPDDPASKEVTEIKGNIEL 837
FMVLI+TAL + E LALAPD++KG+Q + VF +L R+T + D +E++ ++G IEL
Sbjct: 927 FMVLIVTALVMGEVLALAPDLLKGNQMVVSVFELLDRRTQVVGD--TGEELSNVEGTIEL 984
Query: 838 RNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLID 897
+ V F YP RPD+TIF + NL V +G+S+A+VGQSGSGKS+V+SLV+RFYDP +G ++ID
Sbjct: 985 KGVHFSYPSRPDVTIFSDFNLLVPSGKSMALVGQSGSGKSSVLSLVLRFYDPTAGIIMID 1044
Query: 898 GYDIRTLNLRSLRRKIGLVQQEPALFSTTIYENIKYGNEDASEIELMKATKAANAHGFIS 957
G DI+ L L+SLRR IGLVQQEPALF+TTIYENI YG E ASE E+M+A K ANAH FIS
Sbjct: 1045 GQDIKKLKLKSLRRHIGLVQQEPALFATTIYENILYGKEGASESEVMEAAKLANAHSFIS 1104
Query: 958 RMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEALD 1017
+PEGY + VG+RG+Q+SGGQ+QR+AIARA+LKNP ILLLDEATSALD SE ++Q+ALD
Sbjct: 1105 SLPEGYSTKVGERGIQMSGGQRQRIAIARAVLKNPEILLLDEATSALDVESERVVQQALD 1164
Query: 1018 KLMEGRTTIMVAHRLSTIRNADKIAVLQQGKVAEIGSHEQLLRKENGIYKQLIRLQQ 1074
+LM RTT++VAHRLSTI+N+D I+V+Q GK+ E GSH L+ +NG Y +LI LQQ
Sbjct: 1165 RLMRDRTTVVVAHRLSTIKNSDMISVIQDGKIIEQGSHNILVENKNGPYSKLISLQQ 1221
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9ZR72|AB1B_ARATH ABC transporter B family member 1 OS=Arabidopsis thaliana GN=ABCB1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 1087 bits (2811), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 566/1099 (51%), Positives = 770/1099 (70%), Gaps = 29/1099 (2%)
Query: 4 GHALRYLSQFFVGFAVGFTSVWQLTLLTLAVVPLIAVAGGAYTITMSTLSEKGEAAYGEA 63
G+ + Y++ F GF VGFT+VWQL L+TLAVVPLIAV GG +T T+S LS K + + +A
Sbjct: 167 GNFIHYMATFVSGFIVGFTAVWQLALVTLAVVPLIAVIGGIHTTTLSKLSNKSQESLSQA 226
Query: 64 GKVAEEIISQVRAVYAFVGEAKAIESYSHSLKEALKQGKKSGVAKGIGVGLTYGLLFCAW 123
G + E+ + Q+R V AFVGE++A ++YS +LK A K G K+G+AKG+G+G TY ++FC +
Sbjct: 227 GNIVEQTVVQIRVVMAFVGESRASQAYSSALKIAQKLGYKTGLAKGMGLGATYFVVFCCY 286
Query: 124 ALLLWYAGILVRHGDTNGGKAFTTIINVIFSGFALGQAAPNLAAIAKGKAAAANIISIIK 183
ALLLWY G LVRH TNGG A T+ V+ G ALGQ+AP++AA AK K AAA I II
Sbjct: 287 ALLLWYGGYLVRHHLTNGGLAIATMFAVMIGGLALGQSAPSMAAFAKAKVAAAKIFRII- 345
Query: 184 ENSHSSERPGDDGITLPKLAGQIEFSEVCFAYPSRPHM-VFENLNFSVDAGKTFAFVGPS 242
++ + ER + G+ L + G +E V F+YPSRP + + N SV AGKT A VG S
Sbjct: 346 DHKPTIERNSESGVELDSVTGLVELKNVDFSYPSRPDVKILNNFCLSVPAGKTIALVGSS 405
Query: 243 GSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNIL 302
GSGKST++S+++R Y+P SG++LLDG DLK+L+L+WLR+Q+GLVSQEPALFATSI NIL
Sbjct: 406 GSGKSTVVSLIERFYDPNSGQVLLDGQDLKTLKLRWLRQQIGLVSQEPALFATSIKENIL 465
Query: 303 LGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNP 362
LG+ DA + EAA+ ANAHSF+ LPDG+ TQVGE G QLSGGQKQRIAIARA+L+NP
Sbjct: 466 LGRPDADQVEIEEAARVANAHSFIIKLPDGFDTQVGERGLQLSGGQKQRIAIARAMLKNP 525
Query: 363 KILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRDVDTIMVLKNGQVVES 422
ILLLDEATSALD+ESE +VQ AL++ M RTT+++AHRLST+R D + VL+ G V E
Sbjct: 526 AILLLDEATSALDSESEKLVQEALDRFMIGRTTLIIAHRLSTIRKADLVAVLQQGSVSEI 585
Query: 423 GTHVDLISKG--GEYAALVNLQSSEH---LSN-------PSSICYSGSS----RYSSFRD 466
GTH +L SKG G YA L+ +Q + H +SN PSS S SS R SS+
Sbjct: 586 GTHDELFSKGENGVYAKLIKMQEAAHETAMSNARKSSARPSSARNSVSSPIMTRNSSYGR 645
Query: 467 FPSSRR--------YDVEFESSKRRELQSSDQSFAP-SPSIWELLKLNAAEWPYAVLGSV 517
P SRR + + ++S ++ +F + S W L K+N+ EW YA+LGSV
Sbjct: 646 SPYSRRLSDFSTSDFSLSIDASSYPNYRNEKLAFKDQANSFWRLAKMNSPEWKYALLGSV 705
Query: 518 GAILAGMEAPLFALGITHILTAFYSPHDSQIKRVVDQVALIFVGLAVVTIPVYLLQHYFY 577
G+++ G + FA ++ +L+ +Y+P + + +D+ + +GL+ + LQH F+
Sbjct: 706 GSVICGSLSAFFAYVLSAVLSVYYNPDHEYMIKQIDKYCYLLIGLSSAALVFNTLQHSFW 765
Query: 578 TLMGEHLTARVRLSMFSAILSNEIGWFDLDENNTGLLISTLAADATLVRSALADRLSIIV 637
++GE+LT RVR M SA+L NE+ WFD +EN + + + LA DA VRSA+ DR+S+IV
Sbjct: 766 DIVGENLTKRVREKMLSAVLKNEMAWFDQEENESARIAARLALDANNVRSAIGDRISVIV 825
Query: 638 QNVALTVTAFVIAFILSWRLAAVVAASLPLLIGAFVAEQLFLKGFGGDYNRAYSRATSVA 697
QN AL + A F+L WRLA V+ A P+++ A V +++F+ GF GD A+++ T +A
Sbjct: 826 QNTALMLVACTAGFVLQWRLALVLVAVFPVVVAATVLQKMFMTGFSGDLEAAHAKGTQLA 885
Query: 698 REAIANIRTVAAYGIEKRISIQFASELSQPNKQALLRGHISGFGYGVSQLLSLCSYALGL 757
EAIAN+RTVAA+ E +I + + L P K+ +G I+G GYGV+Q SYALGL
Sbjct: 886 GEAIANVRTVAAFNSEAKIVRLYTANLEPPLKRCFWKGQIAGSGYGVAQFCLYASYALGL 945
Query: 758 WYASVLIKQKGSNFGDIMKSFMVLIITALAVAETLALAPDIVKGSQALGPVFGILYRKTA 817
WYAS L+K S+F ++ FMVL+++A AETL LAPD +KG QA+ VF +L RKT
Sbjct: 946 WYASWLVKHGISDFSKTIRVFMVLMVSANGAAETLTLAPDFIKGGQAMRSVFELLDRKTE 1005
Query: 818 IQPDDPASKEVTE-IKGNIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGK 876
I+PDDP + V + ++G +EL+++ F YP RPDI IF +L+L+ AG++LA+VG SG GK
Sbjct: 1006 IEPDDPDTTPVPDRLRGEVELKHIDFSYPSRPDIQIFRDLSLRARAGKTLALVGPSGCGK 1065
Query: 877 STVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRKIGLVQQEPALFSTTIYENIKYGNE 936
S+VISL+ RFY+P SG V+IDG DIR NL+++R+ I +V QEP LF TTIYENI YG+E
Sbjct: 1066 SSVISLIQRFYEPSSGRVMIDGKDIRKYNLKAIRKHIAIVPQEPCLFGTTIYENIAYGHE 1125
Query: 937 DASEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILL 996
A+E E+++A A+AH FIS +PEGY+++VG+RGVQLSGGQKQR+AIARA+++ I+L
Sbjct: 1126 CATEAEIIQAATLASAHKFISALPEGYKTYVGERGVQLSGGQKQRIAIARALVRKAEIML 1185
Query: 997 LDEATSALDTASENLIQEALDKLMEGRTTIMVAHRLSTIRNADKIAVLQQGKVAEIGSHE 1056
LDEATSALD SE +QEALD+ GRT+I+VAHRLSTIRNA IAV+ GKVAE GSH
Sbjct: 1186 LDEATSALDAESERSVQEALDQACSGRTSIVVAHRLSTIRNAHVIAVIDDGKVAEQGSHS 1245
Query: 1057 QLLRKE-NGIYKQLIRLQQ 1074
LL+ +GIY ++I+LQ+
Sbjct: 1246 HLLKNHPDGIYARMIQLQR 1264
|
Auxin efflux transporter that acts as a negative regulator of light signaling to promote hypocotyl elongation. Mediates the accumulation of chlorophyll and anthocyanin, as well as the expression of genes in response to light. Participates directly in auxin efflux and thus regulates the polar (presumably basipetal) auxin transport (from root tips to root elongating zone). Transports also some auxin metabolites such as oxindoleacetic acid and indoleacetaldehyde. Involved in divers auxin-mediated responses including gravitropism, phototropism and lateral root formation. Confers resistance to herbicides such as dicamba, pendimethalin, oryzalin, and monosodium acid methanearsonate (MSMA), but not to herbicides such as glyphosate, atrazine, bentazon and fluazifop-p-butyl. Mediates also resistance to xenobiotics such as cycloheximide and the cytokinin N6-(2-isopentenyl)adenine (2IP). Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LSJ6|AB17B_ARATH ABC transporter B family member 17 OS=Arabidopsis thaliana GN=ABCB17 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 920 bits (2377), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 479/1080 (44%), Positives = 695/1080 (64%), Gaps = 24/1080 (2%)
Query: 11 SQFFVGFAVGFTSVWQLTLLTLAVVPLIAVAGGAYTITMSTLSEKGEAAYGEAGKVAEEI 70
S F + V F +W+LT++ + L+ V G Y + ++S K Y EAG +AE+
Sbjct: 166 SAFVASYIVSFILMWRLTIVGFPFIILLLVPGLMYGRALVSISRKIHEQYNEAGSIAEQA 225
Query: 71 ISQVRAVYAFVGEAKAIESYSHSLKEALKQGKKSGVAKGIGVGLTYGLLFCAWALLLWYA 130
IS VR VYAF E K I +S +L+ ++K G + G+AKGI +G + G+ WA L WY
Sbjct: 226 ISSVRTVYAFGSENKMIGKFSTALRGSVKLGLRQGLAKGITIG-SNGVTHAIWAFLTWYG 284
Query: 131 GILVRHGDTNGGKAFTTIINVIFSGFALGQAAPNLAAIAKGKAAAANIISIIKE--NSHS 188
LV + + GG F I + + G +LGQ+ NL ++ A I+ +IK + S
Sbjct: 285 SRLVMNHGSKGGTVFVVISCITYGGVSLGQSLSNLKYFSEAFVAWERILEVIKRVPDIDS 344
Query: 189 SERPGDDGITLPKLAGQIEFSEVCFAYPSRPHM-VFENLNFSVDAGKTFAFVGPSGSGKS 247
+++ G L ++ G++EF+ V F Y SRP +F++L + AGKT A VG SGSGKS
Sbjct: 345 NKKEGQ---ILERMKGEVEFNHVKFTYLSRPETTIFDDLCLKIPAGKTVALVGGSGSGKS 401
Query: 248 TIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNILLGKED 307
T+IS++QR Y+P +G+IL+DG + LQ+ WLR QMGLVSQEP LFATSI NIL GKED
Sbjct: 402 TVISLLQRFYDPIAGEILIDGVSIDKLQVNWLRSQMGLVSQEPVLFATSITENILFGKED 461
Query: 308 ASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLL 367
AS+D V+EAAKA+NAH+F+ P GY+TQVGE G Q+SGGQKQRIAIARA++++PKILLL
Sbjct: 462 ASLDEVVEAAKASNAHTFISQFPLGYKTQVGERGVQMSGGQKQRIAIARAIIKSPKILLL 521
Query: 368 DEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRDVDTIMVLKNGQVVESGTHVD 427
DEATSALD+ESE +VQ +L+ RTTIV+AHRLST+R+ D I V+ NGQ+VE+G+H +
Sbjct: 522 DEATSALDSESERVVQESLDNASIGRTTIVIAHRLSTIRNADVICVIHNGQIVETGSHEE 581
Query: 428 LISK-GGEYAALVNLQSSEHLSNPSSICYSGSSR--YSSFRDFPSSRRYDVEFESSKRRE 484
L+ + G+Y +LV+LQ E+ + +I S + S +DF S+ + SS
Sbjct: 582 LLKRIDGQYTSLVSLQQMENEESNVNINVSVTKDQVMSLSKDFKYSQHNSIGSTSS---S 638
Query: 485 LQSSDQSFAPS------PSIWELLKLNAAEWPYAVLGSVGAILAGMEAPLFALGITHILT 538
+ ++ P+ PS L+ +N EW +A+ G + A L G+ P+ A +++
Sbjct: 639 IVTNVSDLIPNDNQPLVPSFTRLMVMNRPEWKHALYGCLSAALVGVLQPVSAYSAGSVIS 698
Query: 539 AFYSPHDSQIKRVVDQVALIFVGLAVVTIPVYLLQHYFYTLMGEHLTARVRLSMFSAILS 598
F+ QIK L+FVGLA+ + V + QHY + MGE+LT R+R M S IL+
Sbjct: 699 VFFLTSHDQIKEKTRIYVLLFVGLAIFSFLVNISQHYGFAYMGEYLTKRIREQMLSKILT 758
Query: 599 NEIGWFDLDENNTGLLISTLAADATLVRSALADRLSIIVQNVALTVTAFVIAFILSWRLA 658
E+ WFD+D+N++G + S LA DA +VRS + DR+S++VQ ++ + A +I +++WRLA
Sbjct: 759 FEVNWFDIDDNSSGAICSRLAKDANVVRSMVGDRMSLLVQTISAVIIACIIGLVIAWRLA 818
Query: 659 AVVAASLPLLIGAFVAEQLFLKGFGGDYNRAYSRATSVAREAIANIRTVAAYGIEKRISI 718
V+ + PL++ F +++ LK ++A ++ +A EA++NIRT+ A+ ++RI I
Sbjct: 819 IVMISVQPLIVVCFYTQRVLLKSLSEKASKAQDESSKLAAEAVSNIRTITAFSSQERI-I 877
Query: 719 QFASELSQ-PNKQALLRGHISGFGYGVSQLLSLCSYALGLWYASVLIKQKGSNFGDIMKS 777
+ ++ + P ++++ R ++G G S+ L C+ AL WY LI +
Sbjct: 878 KLLKKVQEGPRRESVHRSWLAGIVLGTSRSLITCTSALNFWYGGRLIADGKIVSKAFFEI 937
Query: 778 FMVLIITALAVAETLALAPDIVKGSQALGPVFGILYRKTAIQPDDPASKEVTEIKGNIEL 837
F++ + T +A+ + D+ +G A+G VF +L R T I+P +P +IKG I
Sbjct: 938 FLIFVTTGRVIADAGTMTTDLARGLDAVGSVFAVLDRCTTIEPKNPDGYVAEKIKGQITF 997
Query: 838 RNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLID 897
NV F YP RPD+ IFEN ++++ G+S A+VG SGSGKST+I L+ RFYDP+ GTV ID
Sbjct: 998 LNVDFAYPTRPDVVIFENFSIEIDEGKSTAIVGTSGSGKSTIIGLIERFYDPLKGTVKID 1057
Query: 898 GYDIRTLNLRSLRRKIGLVQQEPALFSTTIYENIKYG--NEDASEIELMKATKAANAHGF 955
G DIR+ +LRSLR+ I LV QEP LF+ TI ENI YG ++ E E+++A KAANAH F
Sbjct: 1058 GRDIRSYHLRSLRKYISLVSQEPMLFAGTIRENIMYGGTSDKIDESEIIEAAKAANAHDF 1117
Query: 956 ISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEA 1015
I+ + GY ++ GD+GVQLSGGQKQR+AIARA+LKNPS+LLLDEATSALD+ SE ++Q+A
Sbjct: 1118 ITSLSNGYDTNCGDKGVQLSGGQKQRIAIARAVLKNPSVLLLDEATSALDSKSERVVQDA 1177
Query: 1016 LDKLMEGRTTIMVAHRLSTIRNADKIAVLQQGKVAEIGSHEQLLRK-ENGIYKQLIRLQQ 1074
L+++M GRT+IM+AHRLSTI+N D I VL +GK+ E G+H LL K G Y L +Q+
Sbjct: 1178 LERVMVGRTSIMIAHRLSTIQNCDMIVVLGKGKIVESGTHSSLLEKGPTGTYFSLAGIQR 1237
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LHD1|AB15B_ARATH ABC transporter B family member 15 OS=Arabidopsis thaliana GN=ABCB15 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 918 bits (2373), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 490/1074 (45%), Positives = 689/1074 (64%), Gaps = 19/1074 (1%)
Query: 14 FVG-FAVGFTSVWQLTLLTLAVVPLIAVAGGAYTITMSTLSEKGEAAYGEAGKVAEEIIS 72
FVG + VGF +W+L ++ L + L+ + G Y + ++S K Y EAG VAE+ IS
Sbjct: 168 FVGSYIVGFILLWRLAIVGLPFIVLLVIPGLMYGRALISISRKIREEYNEAGFVAEQAIS 227
Query: 73 QVRAVYAFVGEAKAIESYSHSLKEALKQGKKSGVAKGIGVGLTYGLLFCAWALLLWYAGI 132
VR VYAF GE K I +S +L+ ++K G K G+AKGI +G + G+ F W + WY
Sbjct: 228 SVRTVYAFSGERKTISKFSTALQGSVKLGIKQGLAKGITIG-SNGITFAMWGFMSWYGSR 286
Query: 133 LVRHGDTNGGKAFTTIINVIFSGFALGQAAPNLAAIAKGKAAAANIISIIKENSH-SSER 191
+V + GG F + G +LG NL + + I+ +I S+
Sbjct: 287 MVMYHGAQGGTVFAVAAAIAIGGVSLGGGLSNLKYFFEAASVGERIMEVINRVPKIDSDN 346
Query: 192 PGDDGITLPKLAGQIEFSEVCFAYPSRPHM-VFENLNFSVDAGKTFAFVGPSGSGKSTII 250
P DG L K+ G++EF V F YPSR +F++ V +GKT A VG SGSGKST+I
Sbjct: 347 P--DGHKLEKIRGEVEFKNVKFVYPSRLETSIFDDFCLRVPSGKTVALVGGSGSGKSTVI 404
Query: 251 SMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNILLGKEDASM 310
S++QR Y+P +G+IL+DG + LQ+KWLR QMGLVSQEPALFAT+I NIL GKEDASM
Sbjct: 405 SLLQRFYDPLAGEILIDGVSIDKLQVKWLRSQMGLVSQEPALFATTIKENILFGKEDASM 464
Query: 311 DRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEA 370
D V+EAAKA+NAH+F+ LP+GY+TQVGE G Q+SGGQKQRIAIARA++++P ILLLDEA
Sbjct: 465 DDVVEAAKASNAHNFISQLPNGYETQVGERGVQMSGGQKQRIAIARAIIKSPTILLLDEA 524
Query: 371 TSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRDVDTIMVLKNGQVVESGTHVDLIS 430
TSALD+ESE +VQ ALE RTTI++AHRLST+R+ D I V+KNG +VE+G+H +L+
Sbjct: 525 TSALDSESERVVQEALENASIGRTTILIAHRLSTIRNADVISVVKNGHIVETGSHDELME 584
Query: 431 K-GGEYAALVNLQSSEHLSNPSSICYSGSSRYSSFRDFPSSRRYDVEFESSKRRELQS-- 487
G+Y+ LV+LQ E S+ S S +D +S R SS +
Sbjct: 585 NIDGQYSTLVHLQQIEKQDINVSVKIGPISDPS--KDIRNSSRVSTLSRSSSANSVTGPS 642
Query: 488 -----SDQSFAPSPSIWELLKLNAAEWPYAVLGSVGAILAGMEAPLFALGITHILTAFYS 542
S+ + PS LL +N EW A+ G + A L G P +A + +++ ++
Sbjct: 643 TIKNLSEDNKPQLPSFKRLLAMNLPEWKQALYGCISATLFGAIQPAYAYSLGSMVSVYFL 702
Query: 543 PHDSQIKRVVDQVALIFVGLAVVTIPVYLLQHYFYTLMGEHLTARVRLSMFSAILSNEIG 602
+IK AL FVGLAV++ + + QHY + MGE+LT R+R M S +L+ E+G
Sbjct: 703 TSHDEIKEKTRIYALSFVGLAVLSFLINISQHYNFAYMGEYLTKRIRERMLSKVLTFEVG 762
Query: 603 WFDLDENNTGLLISTLAADATLVRSALADRLSIIVQNVALTVTAFVIAFILSWRLAAVVA 662
WFD DEN++G + S LA DA +VRS + DR++++VQ V+ AF + +++WRLA V+
Sbjct: 763 WFDRDENSSGAICSRLAKDANVVRSLVGDRMALVVQTVSAVTIAFTMGLVIAWRLALVMI 822
Query: 663 ASLPLLIGAFVAEQLFLKGFGGDYNRAYSRATSVAREAIANIRTVAAYGIEKRISIQFAS 722
A P++I F ++ LK +A ++ +A EA++N+RT+ A+ ++RI
Sbjct: 823 AVQPVIIVCFYTRRVLLKSMSKKAIKAQDESSKLAAEAVSNVRTITAFSSQERIMKMLEK 882
Query: 723 ELSQPNKQALLRGHISGFGYGVSQLLSLCSYALGLWYASVLIKQKGSNFGDIMKSFMVLI 782
P ++++ + +GFG +SQ L+ C++AL WY LI+ + ++FM+L+
Sbjct: 883 AQESPRRESIRQSWFAGFGLAMSQSLTSCTWALDFWYGGRLIQDGYITAKALFETFMILV 942
Query: 783 ITALAVAETLALAPDIVKGSQALGPVFGILYRKTAIQPDDPASKEVTEIKGNIELRNVSF 842
T +A+ ++ D+ KGS A+G VF +L R T+I P+DP E I G +E +V F
Sbjct: 943 STGRVIADAGSMTTDLAKGSDAVGSVFAVLDRYTSIDPEDPDGYETERITGQVEFLDVDF 1002
Query: 843 KYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIR 902
YP RPD+ IF+N ++K+ G+S A+VG SGSGKST+I L+ RFYDP+ G V IDG DIR
Sbjct: 1003 SYPTRPDVIIFKNFSIKIEEGKSTAIVGPSGSGKSTIIGLIERFYDPLKGIVKIDGRDIR 1062
Query: 903 TLNLRSLRRKIGLVQQEPALFSTTIYENIKYG--NEDASEIELMKATKAANAHGFISRMP 960
+ +LRSLRR I LV QEP LF+ TI ENI YG ++ E E+++A KAANAH FI+ +
Sbjct: 1063 SYHLRSLRRHIALVSQEPTLFAGTIRENIIYGGVSDKIDEAEIIEAAKAANAHDFITSLT 1122
Query: 961 EGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLM 1020
EGY ++ GDRGVQLSGGQKQR+AIARA+LKNPS+LLLDEATSALD+ SE ++Q+AL+++M
Sbjct: 1123 EGYDTYCGDRGVQLSGGQKQRIAIARAVLKNPSVLLLDEATSALDSQSERVVQDALERVM 1182
Query: 1021 EGRTTIMVAHRLSTIRNADKIAVLQQGKVAEIGSHEQLLRK-ENGIYKQLIRLQ 1073
GRT++++AHRLSTI+N D IAVL +GK+ E G+H LL K GIY L+ LQ
Sbjct: 1183 VGRTSVVIAHRLSTIQNCDAIAVLDKGKLVERGTHSSLLSKGPTGIYFSLVSLQ 1236
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LSJ5|AB18B_ARATH ABC transporter B family member 18 OS=Arabidopsis thaliana GN=ABCB18 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 915 bits (2365), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 483/1094 (44%), Positives = 678/1094 (61%), Gaps = 55/1094 (5%)
Query: 11 SQFFVGFAVGFTSVWQLTLLTLAVVPLIAVAGGAYTITMSTLSEKGEAAYGEAGKVAEEI 70
S F + VGF +W+LT++ + L+ + G Y + +S K Y EAG +AE++
Sbjct: 154 SAFVASYIVGFLLLWRLTIVGFPFIILLLIPGLMYGRALIRISMKIREEYNEAGSIAEQV 213
Query: 71 ISQVRAVYAFVGEAKAIESYSHSLKEALKQGKKSGVAKGIGVGLTYGLLFCAWALLLWYA 130
IS VR VYAF E K IE +S +L+ ++K G + G+AKGI +G + G+ + W L WY
Sbjct: 214 ISSVRTVYAFGSEKKMIEKFSTALQGSVKLGLRQGLAKGIAIG-SNGITYAIWGFLTWYG 272
Query: 131 GILVRHGDTNGGKAFTTIINVIFSGFALGQAAPNLAAIAKGKAAAANIISIIKENSHSSE 190
+V + + GG + I+ V F G +LGQ+ NL ++ I+ +I +
Sbjct: 273 SRMVMNHGSKGGTVSSVIVCVTFGGTSLGQSLSNLKYFSEAFVVGERIMKVI------NR 326
Query: 191 RPGDD-----GITLPKLAGQIEFSEVCFAYPSRPHM-VFENLNFSVDAGKTFAFVGPSGS 244
PG D G L K G++EF+ V F YPSRP +F++L V +GKT A VG SGS
Sbjct: 327 VPGIDSDNLEGQILEKTRGEVEFNHVKFTYPSRPETPIFDDLCLRVPSGKTVALVGGSGS 386
Query: 245 GKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNILLG 304
GKST+IS++QR Y+P +G+IL+DG + LQ+KWLR QMGLVSQEP LFATSI NIL G
Sbjct: 387 GKSTVISLLQRFYDPIAGEILIDGLPINKLQVKWLRSQMGLVSQEPVLFATSIKENILFG 446
Query: 305 KEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKI 364
KEDASMD V+EAAKA+NAHSF+ P+ YQTQVGE G QLSGGQKQRIAIARA++++P I
Sbjct: 447 KEDASMDEVVEAAKASNAHSFISQFPNSYQTQVGERGVQLSGGQKQRIAIARAIIKSPII 506
Query: 365 LLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRDVDTIMVLKNGQVVESGT 424
LLLDEATSALD+ESE +VQ AL+ RTTIV+AHRLST+R+ D I V+ NG+++E+G+
Sbjct: 507 LLLDEATSALDSESERVVQEALDNASIGRTTIVIAHRLSTIRNADVICVVHNGRIIETGS 566
Query: 425 HVDLISK-GGEYAALVNLQ-----SSEHLS---------------NPSSICYSGSSRYSS 463
H +L+ K G+Y +LV LQ S+H+S +P +S SS
Sbjct: 567 HEELLEKLDGQYTSLVRLQQVDNKESDHISVEEGQASSLSKDLKYSPKEFIHSTSSNI-- 624
Query: 464 FRDFPSSRRYDVEFESSKRRELQSSDQSFAPSPSIWELLKLNAAEWPYAVLGSVGAILAG 523
RDFP+ D + + PS L+ +N EW +A+ G +GA L G
Sbjct: 625 VRDFPNLSPKDGK----------------SLVPSFKRLMSMNRPEWKHALYGCLGAALFG 668
Query: 524 MEAPLFALGITHILTAFYSPHDSQIKRVVDQVALIFVGLAVVTIPVYLLQHYFYTLMGEH 583
P+++ +++ ++ QIK L+FVGLA+ T + QHY + MGE+
Sbjct: 669 AVQPIYSYSSGSMVSVYFLASHDQIKEKTRIYVLLFVGLALFTFLSNISQHYGFAYMGEY 728
Query: 584 LTARVRLSMFSAILSNEIGWFDLDENNTGLLISTLAADATLVRSALADRLSIIVQNVALT 643
LT R+R M IL+ E+ WFD DEN++G + S LA DA +VRS + DR+S++VQ ++
Sbjct: 729 LTKRIRERMLGKILTFEVNWFDKDENSSGAICSRLAKDANMVRSLVGDRMSLLVQTISAV 788
Query: 644 VTAFVIAFILSWRLAAVVAASLPLLIGAFVAEQLFLKGFGGDYNRAYSRATSVAREAIAN 703
I ++SWR + V+ + P+++ F +++ LK + + ++ +A EA++N
Sbjct: 789 SITCAIGLVISWRFSIVMMSVQPVIVVCFYTQRVLLKSMSRNAIKGQDESSKLAAEAVSN 848
Query: 704 IRTVAAYGIEKRISIQFASELSQPNKQALLRGHISGFGYGVSQLLSLCSYALGLWYASVL 763
IRT+ A+ ++RI P K + + ++G G SQ L C AL WY L
Sbjct: 849 IRTITAFSSQERIINLLKMVQEGPRKDSARQSWLAGIMLGTSQSLITCVSALNFWYGGKL 908
Query: 764 IKQKGSNFGDIMKSFMVLIITALAVAETLALAPDIVKGSQALGPVFGILYRKTAIQPDDP 823
I + ++ F++ T +AE + D+VKGS A+ VF +L R T I+P++P
Sbjct: 909 IADGKMMSKEFLEIFLIFASTGRVIAEAGTMTKDLVKGSDAVASVFAVLDRNTTIEPENP 968
Query: 824 ASKEVTEIKGNIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLV 883
++KG I NV F YP RPD+ IF+N ++ + G+S A+VG SGSGKST+ISL+
Sbjct: 969 DGYVPKKVKGQISFSNVDFAYPTRPDVIIFQNFSIDIEDGKSTAIVGPSGSGKSTIISLI 1028
Query: 884 MRFYDPISGTVLIDGYDIRTLNLRSLRRKIGLVQQEPALFSTTIYENIKYG--NEDASEI 941
RFYDP+ G V IDG DIR+ +LRSLR+ I LV QEP LF+ TI ENI YG + E
Sbjct: 1029 ERFYDPLKGIVKIDGRDIRSCHLRSLRQHIALVSQEPTLFAGTIRENIMYGGASNKIDES 1088
Query: 942 ELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEAT 1001
E+++A KAANAH FI+ + GY + GDRGVQLSGGQKQR+AIARA+LKNPS+LLLDEAT
Sbjct: 1089 EIIEAAKAANAHDFITSLSNGYDTCCGDRGVQLSGGQKQRIAIARAVLKNPSVLLLDEAT 1148
Query: 1002 SALDTASENLIQEALDKLMEGRTTIMVAHRLSTIRNADKIAVLQQGKVAEIGSHEQLLRK 1061
SALD+ SE+++Q+AL++LM GRT++++AHRLSTI+ D IAVL+ G V E G+H LL K
Sbjct: 1149 SALDSQSESVVQDALERLMVGRTSVVIAHRLSTIQKCDTIAVLENGAVVECGNHSSLLAK 1208
Query: 1062 -ENGIYKQLIRLQQ 1074
G Y L+ LQ+
Sbjct: 1209 GPKGAYFSLVSLQR 1222
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q6YUU5|MDR_ORYSJ Putative multidrug resistance protein OS=Oryza sativa subsp. japonica GN=Os02g0190300 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 912 bits (2356), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 487/1078 (45%), Positives = 698/1078 (64%), Gaps = 13/1078 (1%)
Query: 13 FFVG-FAVGFTSVWQLTLLTLAVVPLIAVAGGAYTITMSTLSEKGEAAYGEAGKVAEEII 71
F G +AVGF +W+LTL+ L V L+ + G Y + L+ + Y G +AE+ +
Sbjct: 167 MFAGSYAVGFALLWRLTLVALPSVVLLIIPGFMYGRILVGLARRIREQYTRPGAIAEQAV 226
Query: 72 SQVRAVYAFVGEAKAIESYSHSLKEALKQGKKSGVAKGIGVGLTYGLLFCAWALLLWYAG 131
S R VY+FV E + +S +L+E+ + G K G+AKGI VG + G+ F WA +WY
Sbjct: 227 SSARTVYSFVAERTTMAQFSAALEESARLGLKQGLAKGIAVG-SNGITFAIWAFNVWYGS 285
Query: 132 ILVRHGDTNGGKAFTTIINVIFSGFALGQAAPNLAAIAKGKAAAANIISIIKENSHSSER 191
LV + GG F ++ G ALG N+ ++ +AA I+ +I+ +
Sbjct: 286 RLVMYHGYQGGTVFAVSAAIVVGGLALGSGLSNVKYFSEASSAAERILEVIRRVPKI-DS 344
Query: 192 PGDDGITLPKLAGQIEFSEVCFAYPSRPHM-VFENLNFSVDAGKTFAFVGPSGSGKSTII 250
D G L + G++EF V F YPSRP +F + N V AG+T A VG SGSGKST+I
Sbjct: 345 ESDTGEELANVTGEVEFRNVEFCYPSRPESPIFVSFNLRVPAGRTVALVGGSGSGKSTVI 404
Query: 251 SMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNILLGKEDASM 310
++++R Y+P++G++++DG D++ L+LKWLR QMGLVSQEPALFATSI NIL GKE+A+
Sbjct: 405 ALLERFYDPSAGEVMVDGVDIRRLRLKWLRAQMGLVSQEPALFATSIRENILFGKEEATA 464
Query: 311 DRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEA 370
+ V+ AAKAANAH+F+ LP GY TQVGE G Q+SGGQKQRIAIARA+L++PKILLLDEA
Sbjct: 465 EEVVAAAKAANAHNFISQLPQGYDTQVGERGVQMSGGQKQRIAIARAILKSPKILLLDEA 524
Query: 371 TSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRDVDTIMVLKNGQVVESGTHVDLIS 430
TSALD ESE +VQ AL+ RTTIV+AHRLST+R+ D I V+++G+V E G H +LI+
Sbjct: 525 TSALDTESERVVQEALDLASMGRTTIVIAHRLSTIRNADIIAVMQSGEVKELGPHDELIA 584
Query: 431 K-GGEYAALVNLQSSEHLSNPSSICYSGS-------SRYSSFRDFPSSRRYDVEFESSKR 482
G Y++LV LQ + + I +GS S +S R F ++ R
Sbjct: 585 NDNGLYSSLVRLQQTRDSNEIDEIGVTGSTSAVGQSSSHSMSRRFSAASRSSSARSLGDA 644
Query: 483 RELQSSDQSFAPSPSIWELLKLNAAEWPYAVLGSVGAILAGMEAPLFALGITHILTAFYS 542
R+ ++++ P PS LL LNA EW A++GS A++ G P +A + +++ ++
Sbjct: 645 RDDDNTEKPKLPVPSFRRLLMLNAPEWKQALMGSFSAVVFGGIQPAYAYAMGSMISVYFL 704
Query: 543 PHDSQIKRVVDQVALIFVGLAVVTIPVYLLQHYFYTLMGEHLTARVRLSMFSAILSNEIG 602
++IK ALIFVGLAV++ + + QHY + MGE+LT R+R M + IL+ EIG
Sbjct: 705 TDHAEIKDKTRTYALIFVGLAVLSFLINIGQHYNFGAMGEYLTKRIREQMLAKILTFEIG 764
Query: 603 WFDLDENNTGLLISTLAADATLVRSALADRLSIIVQNVALTVTAFVIAFILSWRLAAVVA 662
WFD DEN++G + S LA DA +VRS + DR+++++Q ++ + A + +++WRLA V+
Sbjct: 765 WFDRDENSSGAICSQLAKDANVVRSLVGDRMALVIQTISAVLIACTMGLVIAWRLALVMI 824
Query: 663 ASLPLLIGAFVAEQLFLKGFGGDYNRAYSRATSVAREAIANIRTVAAYGIEKRISIQFAS 722
A PL+I F A ++ LK A + ++ +A EA++N+RT+ A+ ++RI F
Sbjct: 825 AVQPLIIVCFYARRVLLKSMSKKSIHAQAESSKLAAEAVSNLRTITAFSSQERILRLFEQ 884
Query: 723 ELSQPNKQALLRGHISGFGYGVSQLLSLCSYALGLWYASVLIKQKGSNFGDIMKSFMVLI 782
P K+++ + +G G G S L C++AL WY L+ + + ++ ++FM+L+
Sbjct: 885 SQDGPRKESIRQSWFAGLGLGTSMSLMTCTWALDFWYGGRLMAEHHISAKELFQTFMILV 944
Query: 783 ITALAVAETLALAPDIVKGSQALGPVFGILYRKTAIQPDDPASKEVTEIKGNIELRNVSF 842
T +A+ ++ D+ KG+ A+ VF +L R+T I PD+P + ++KG +++R V F
Sbjct: 945 STGRVIADAGSMTTDLAKGADAVASVFAVLDRETEIDPDNPQGYKPEKLKGEVDIRGVDF 1004
Query: 843 KYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIR 902
YP RPD+ IF+ L + G+S A+VGQSGSGKST+I L+ RFYDPI G+V IDG DI+
Sbjct: 1005 AYPSRPDVIIFKGFTLSIQPGKSTALVGQSGSGKSTIIGLIERFYDPIRGSVKIDGRDIK 1064
Query: 903 TLNLRSLRRKIGLVQQEPALFSTTIYENIKYGNEDASEIELMKATKAANAHGFISRMPEG 962
NLR+LRR IGLV QEP LF+ TI ENI YG E ASE E+ A ++ANAH FIS + +G
Sbjct: 1065 AYNLRALRRHIGLVSQEPTLFAGTIRENIVYGTETASEAEIEDAARSANAHDFISNLKDG 1124
Query: 963 YQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLMEG 1022
Y + G+RGVQLSGGQKQR+AIARAILKNP+ILLLDEATSALD+ SE ++QEALD++M G
Sbjct: 1125 YDTWCGERGVQLSGGQKQRIAIARAILKNPAILLLDEATSALDSQSEKVVQEALDRVMIG 1184
Query: 1023 RTTIMVAHRLSTIRNADKIAVLQQGKVAEIGSHEQLLRKE-NGIYKQLIRLQQDKNPE 1079
RT+++VAHRLSTI+N D I VL++G V E G+H L+ K +G Y L+ LQQ N +
Sbjct: 1185 RTSVVVAHRLSTIQNCDLITVLEKGTVVEKGTHASLMAKGLSGTYFSLVNLQQGGNQQ 1242
|
Oryza sativa subsp. japonica (taxid: 39947) |
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 1082 | ||||||
| 359492272 | 1254 | PREDICTED: ABC transporter B family memb | 0.992 | 0.856 | 0.790 | 0.0 | |
| 147816786 | 1344 | hypothetical protein VITISV_031708 [Viti | 0.992 | 0.799 | 0.790 | 0.0 | |
| 255538998 | 1252 | multidrug resistance protein 1, 2, putat | 0.990 | 0.856 | 0.785 | 0.0 | |
| 356552060 | 1250 | PREDICTED: ABC transporter B family memb | 0.995 | 0.861 | 0.780 | 0.0 | |
| 356562417 | 1250 | PREDICTED: ABC transporter B family memb | 0.991 | 0.858 | 0.781 | 0.0 | |
| 224065781 | 1219 | multidrug/pheromone exporter, MDR family | 0.979 | 0.869 | 0.753 | 0.0 | |
| 317106602 | 1135 | JHL20J20.17 [Jatropha curcas] | 0.995 | 0.948 | 0.775 | 0.0 | |
| 449437414 | 1281 | PREDICTED: ABC transporter B family memb | 0.997 | 0.842 | 0.733 | 0.0 | |
| 449515526 | 1248 | PREDICTED: LOW QUALITY PROTEIN: ABC tran | 0.997 | 0.864 | 0.733 | 0.0 | |
| 297851228 | 1246 | P-glycoprotein 13 [Arabidopsis lyrata su | 0.990 | 0.860 | 0.717 | 0.0 |
| >gi|359492272|ref|XP_002279471.2| PREDICTED: ABC transporter B family member 13-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1721 bits (4456), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 854/1081 (79%), Positives = 959/1081 (88%), Gaps = 7/1081 (0%)
Query: 2 QTGHALRYLSQFFVGFAVGFTSVWQLTLLTLAVVPLIAVAGGAYTITMSTLSEKGEAAYG 61
+ GH LRYLSQFFVGFA+GFTSVWQLTLLT+AVVPL+A+AGGAYT+ M+TLSEKGEAAY
Sbjct: 170 KIGHGLRYLSQFFVGFAIGFTSVWQLTLLTVAVVPLMAIAGGAYTVIMTTLSEKGEAAYA 229
Query: 62 EAGKVAEEIISQVRAVYAFVGEAKAIESYSHSLKEALKQGKKSGVAKGIGVGLTYGLLFC 121
EAGKVAEE ISQVR VY+FVGE +A+E+YS SL++ALK GKKSG AKGIG+G TYGLLFC
Sbjct: 230 EAGKVAEEAISQVRTVYSFVGEDRAVETYSRSLQKALKLGKKSGFAKGIGIGFTYGLLFC 289
Query: 122 AWALLLWYAGILVRHGDTNGGKAFTTIINVIFSGFALGQAAPNLAAIAKGKAAAANIISI 181
AWALLLWYA LVRHGDTNGGKAFTTI+NVIFSGFALGQAAPNLAAIAKG+AAAANI+++
Sbjct: 290 AWALLLWYASKLVRHGDTNGGKAFTTILNVIFSGFALGQAAPNLAAIAKGRAAAANIVNM 349
Query: 182 IKENSHSSERPGDDGITLPKLAGQIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGP 241
I+ +S +S+R D+GI LPK+AGQ+EF EVCFAYPSRP MVFENL+FS+ AGKTFA VGP
Sbjct: 350 IETDSTASKRL-DNGIMLPKVAGQLEFCEVCFAYPSRPSMVFENLSFSIYAGKTFAVVGP 408
Query: 242 SGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNI 301
SGSGKSTIISMVQR YEPTSGKILLDGHD+K+L+LKWLR QMGLVSQEPALFAT+IA NI
Sbjct: 409 SGSGKSTIISMVQRFYEPTSGKILLDGHDIKNLRLKWLRAQMGLVSQEPALFATTIAGNI 468
Query: 302 LLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRN 361
L GKEDA MD+VIEAAKAANAHSFV+GLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRN
Sbjct: 469 LYGKEDADMDQVIEAAKAANAHSFVQGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRN 528
Query: 362 PKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRDVDTIMVLKNGQVVE 421
PKILLLDEATSALDAESELIVQ+AL+KIM NRTTIVVAHRLST+RDV+ I+VLKNGQVVE
Sbjct: 529 PKILLLDEATSALDAESELIVQKALDKIMLNRTTIVVAHRLSTIRDVNKIIVLKNGQVVE 588
Query: 422 SGTHVDLISKGGEYAALVNLQSSEHLSNPSS-ICYSGSSRYSSFRDFPSSRRYDVEFESS 480
SGTH++LIS+GGEYA LV+LQ SEH +PS+ +C S SF + P+S+ + E +S
Sbjct: 589 SGTHLELISQGGEYATLVSLQVSEHGKSPSTKVCQDTSGISKSFPESPNSQNHQQEVKSI 648
Query: 481 KRRELQSSDQSFAPSPS-----IWELLKLNAAEWPYAVLGSVGAILAGMEAPLFALGITH 535
+ ELQ DQ+ A S S +W+L+KLNA EWP+AVLGSVGAILAGMEAPLFALGITH
Sbjct: 649 TKGELQPYDQNMASSSSPPIPSLWQLVKLNAPEWPFAVLGSVGAILAGMEAPLFALGITH 708
Query: 536 ILTAFYSPHDSQIKRVVDQVALIFVGLAVVTIPVYLLQHYFYTLMGEHLTARVRLSMFSA 595
+LTAFYS D QIKR VD ++LIFVG A++TI +YLLQHYFYTLMGE LT R+RL MFSA
Sbjct: 709 VLTAFYSGKDFQIKREVDHISLIFVGAAILTIFIYLLQHYFYTLMGERLTTRIRLLMFSA 768
Query: 596 ILSNEIGWFDLDENNTGLLISTLAADATLVRSALADRLSIIVQNVALTVTAFVIAFILSW 655
ILSNEIGWFDLDEN+TG L S LAADATLVRSALADRLS IVQNVALTVTAFVIAF LSW
Sbjct: 769 ILSNEIGWFDLDENSTGSLTSKLAADATLVRSALADRLSTIVQNVALTVTAFVIAFTLSW 828
Query: 656 RLAAVVAASLPLLIGAFVAEQLFLKGFGGDYNRAYSRATSVAREAIANIRTVAAYGIEKR 715
R+A+V+ AS PLLIGA + EQLFLKGFGGDY RAY++AT+VAREAIANIRTVAA+G E R
Sbjct: 829 RIASVIIASFPLLIGASITEQLFLKGFGGDYTRAYAQATAVAREAIANIRTVAAFGAEDR 888
Query: 716 ISIQFASELSQPNKQALLRGHISGFGYGVSQLLSLCSYALGLWYASVLIKQKGSNFGDIM 775
IS+QFASEL+QPNKQALLRGHISGFGYGVSQL + CSYALGLWYASVLIK SNFGDI+
Sbjct: 889 ISLQFASELNQPNKQALLRGHISGFGYGVSQLFAFCSYALGLWYASVLIKHNDSNFGDII 948
Query: 776 KSFMVLIITALAVAETLALAPDIVKGSQALGPVFGILYRKTAIQPDDPASKEVTEIKGNI 835
KSFMVLIITA +VAETLAL PDIVKGSQALG VF IL RKTAI D+P S VT+I+G+I
Sbjct: 949 KSFMVLIITAFSVAETLALTPDIVKGSQALGSVFSILQRKTAINRDNPTSSVVTDIQGDI 1008
Query: 836 ELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVL 895
E RNVSF+YP RPD+ IF++LNLK+SAG+SLA+VGQSGSGKSTVISLVMRFYDP SG V+
Sbjct: 1009 EFRNVSFRYPARPDLIIFKDLNLKISAGKSLAIVGQSGSGKSTVISLVMRFYDPTSGAVM 1068
Query: 896 IDGYDIRTLNLRSLRRKIGLVQQEPALFSTTIYENIKYGNEDASEIELMKATKAANAHGF 955
IDG+DI+ LNLRSLR KIGLVQQEPALFSTTIYENI+YGNE+ASEIE+MKA +AANAH F
Sbjct: 1069 IDGFDIKGLNLRSLRMKIGLVQQEPALFSTTIYENIRYGNEEASEIEIMKAARAANAHSF 1128
Query: 956 ISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEA 1015
ISRMPEGYQ+ VGDRGVQLSGGQKQRVAIARAILK+PSILLLDEATSALDTASE L+QEA
Sbjct: 1129 ISRMPEGYQTQVGDRGVQLSGGQKQRVAIARAILKDPSILLLDEATSALDTASEKLVQEA 1188
Query: 1016 LDKLMEGRTTIMVAHRLSTIRNADKIAVLQQGKVAEIGSHEQLLRKENGIYKQLIRLQQD 1075
LD LMEGRTTI++AHRLSTI NAD IAVLQ GKV E G H QL+ + IYKQL+ LQQ+
Sbjct: 1189 LDTLMEGRTTILIAHRLSTIHNADSIAVLQHGKVVETGDHRQLITRPGSIYKQLVSLQQE 1248
Query: 1076 K 1076
K
Sbjct: 1249 K 1249
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147816786|emb|CAN71068.1| hypothetical protein VITISV_031708 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1721 bits (4456), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 854/1081 (79%), Positives = 958/1081 (88%), Gaps = 7/1081 (0%)
Query: 2 QTGHALRYLSQFFVGFAVGFTSVWQLTLLTLAVVPLIAVAGGAYTITMSTLSEKGEAAYG 61
+ GH LRYLSQFFVGFA+GFTSVWQLTLLT+AVVPL+A+AGGAYT+ M+TLSEKGEAAY
Sbjct: 260 KIGHGLRYLSQFFVGFAIGFTSVWQLTLLTVAVVPLMAIAGGAYTVIMTTLSEKGEAAYA 319
Query: 62 EAGKVAEEIISQVRAVYAFVGEAKAIESYSHSLKEALKQGKKSGVAKGIGVGLTYGLLFC 121
EAGKVAEE ISQVR VY+FVGE +A+E+YS SL++ALK GKKSG AKGIG+G TYGLLFC
Sbjct: 320 EAGKVAEEAISQVRTVYSFVGEDRAVETYSRSLQKALKLGKKSGFAKGIGIGFTYGLLFC 379
Query: 122 AWALLLWYAGILVRHGDTNGGKAFTTIINVIFSGFALGQAAPNLAAIAKGKAAAANIISI 181
AWALLLWYA LVRHGDTNGGKAFTTI+NVIFSGFALGQAAPNLAAIAKG+AAAANI+++
Sbjct: 380 AWALLLWYASKLVRHGDTNGGKAFTTILNVIFSGFALGQAAPNLAAIAKGRAAAANIVNM 439
Query: 182 IKENSHSSERPGDDGITLPKLAGQIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGP 241
I+ +S +S+R D+GI LPK+AGQ+EF EVCFAYPSRP MVFENL+FS+ AGKTFA VGP
Sbjct: 440 IETDSTASKRL-DNGIMLPKVAGQLEFCEVCFAYPSRPSMVFENLSFSIYAGKTFAVVGP 498
Query: 242 SGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNI 301
SGSGKSTIISMVQR YEPTSGKILLDGHD+K+L+LKWLR QMGLVSQEPALFAT+IA NI
Sbjct: 499 SGSGKSTIISMVQRFYEPTSGKILLDGHDIKNLRLKWLRAQMGLVSQEPALFATTIAGNI 558
Query: 302 LLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRN 361
L GKEDA MD+VIEAAKAANAHSFV+GLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRN
Sbjct: 559 LYGKEDADMDQVIEAAKAANAHSFVQGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRN 618
Query: 362 PKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRDVDTIMVLKNGQVVE 421
PKILLLDEATSALDAESELIVQ+AL+KIM NRTTIVVAHRLST+RDV+ I+VLKNGQVVE
Sbjct: 619 PKILLLDEATSALDAESELIVQKALDKIMLNRTTIVVAHRLSTIRDVNKIIVLKNGQVVE 678
Query: 422 SGTHVDLISKGGEYAALVNLQSSEHLSNPSS-ICYSGSSRYSSFRDFPSSRRYDVEFESS 480
SGTH++LIS+GGEYA LV+LQ SEH +PS+ +C S SF + P+S+ + E +S
Sbjct: 679 SGTHLELISQGGEYATLVSLQVSEHGKSPSTKVCQDTSGISKSFPESPNSQNHQQEVKSI 738
Query: 481 KRRELQSSDQSFAPSPS-----IWELLKLNAAEWPYAVLGSVGAILAGMEAPLFALGITH 535
+ ELQ DQ+ A S S +W+L+KLNA EWP+AVLGSVGAILAGMEAPLFALGITH
Sbjct: 739 TKGELQPYDQNMASSSSPPIPSLWQLVKLNAPEWPFAVLGSVGAILAGMEAPLFALGITH 798
Query: 536 ILTAFYSPHDSQIKRVVDQVALIFVGLAVVTIPVYLLQHYFYTLMGEHLTARVRLSMFSA 595
+LTAFYS D QIKR VD ++LIFVG A++TI +YLLQHYFYTLMGE LT R+RL MFSA
Sbjct: 799 VLTAFYSGKDFQIKREVDHISLIFVGAAILTIFIYLLQHYFYTLMGERLTTRIRLLMFSA 858
Query: 596 ILSNEIGWFDLDENNTGLLISTLAADATLVRSALADRLSIIVQNVALTVTAFVIAFILSW 655
ILSNEIGWFDLDEN+TG L S LAADATL RSALADRLS IVQNVALTVTAFVIAF LSW
Sbjct: 859 ILSNEIGWFDLDENSTGSLTSKLAADATLXRSALADRLSTIVQNVALTVTAFVIAFTLSW 918
Query: 656 RLAAVVAASLPLLIGAFVAEQLFLKGFGGDYNRAYSRATSVAREAIANIRTVAAYGIEKR 715
R+A+V+ AS PLLIGA + EQLFLKGFGGDY RAY++AT+VAREAIANIRTVAA+G E R
Sbjct: 919 RIASVIIASFPLLIGASITEQLFLKGFGGDYTRAYAQATAVAREAIANIRTVAAFGAEDR 978
Query: 716 ISIQFASELSQPNKQALLRGHISGFGYGVSQLLSLCSYALGLWYASVLIKQKGSNFGDIM 775
IS+QFASEL+QPNKQALLRGHISGFGYGVSQL + CSYALGLWYASVLIK SNFGDI+
Sbjct: 979 ISLQFASELNQPNKQALLRGHISGFGYGVSQLFAFCSYALGLWYASVLIKHNDSNFGDII 1038
Query: 776 KSFMVLIITALAVAETLALAPDIVKGSQALGPVFGILYRKTAIQPDDPASKEVTEIKGNI 835
KSFMVLIITA +VAETLAL PDIVKGSQALG VF IL RKTAI D P S VT+I+G+I
Sbjct: 1039 KSFMVLIITAFSVAETLALTPDIVKGSQALGSVFSILQRKTAINRDXPTSSVVTDIQGDI 1098
Query: 836 ELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVL 895
E RNVSF+YP RPD+TIF++LNLK+SAG+SLA+VGQSGSGKSTVISLVMRFYDP SG V+
Sbjct: 1099 EFRNVSFRYPARPDLTIFKDLNLKISAGKSLAIVGQSGSGKSTVISLVMRFYDPTSGAVM 1158
Query: 896 IDGYDIRTLNLRSLRRKIGLVQQEPALFSTTIYENIKYGNEDASEIELMKATKAANAHGF 955
IDG+DI+ LNLRSLR KIGLVQQEPALFSTTIYENI+YGNE+ASEIE+MKA +AANAH F
Sbjct: 1159 IDGFDIKGLNLRSLRMKIGLVQQEPALFSTTIYENIRYGNEEASEIEIMKAARAANAHXF 1218
Query: 956 ISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEA 1015
ISRMPEGYQ+ VGDRGVQLSGGQKQRVAIARAILK+PSILLLDEATSALDTASE L+QEA
Sbjct: 1219 ISRMPEGYQTQVGDRGVQLSGGQKQRVAIARAILKDPSILLLDEATSALDTASEKLVQEA 1278
Query: 1016 LDKLMEGRTTIMVAHRLSTIRNADKIAVLQQGKVAEIGSHEQLLRKENGIYKQLIRLQQD 1075
LD LMEGRTTI++AHRLSTI NAD IAVLQ GKV E G H QL+ + IYKQL+ LQQ+
Sbjct: 1279 LDTLMEGRTTILIAHRLSTIHNADSIAVLQHGKVVETGDHRQLITRPGSIYKQLVSLQQE 1338
Query: 1076 K 1076
K
Sbjct: 1339 K 1339
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255538998|ref|XP_002510564.1| multidrug resistance protein 1, 2, putative [Ricinus communis] gi|223551265|gb|EEF52751.1| multidrug resistance protein 1, 2, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 1721 bits (4456), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 848/1079 (78%), Positives = 961/1079 (89%), Gaps = 7/1079 (0%)
Query: 2 QTGHALRYLSQFFVGFAVGFTSVWQLTLLTLAVVPLIAVAGGAYTITMSTLSEKGEAAYG 61
+TGHA+RYLSQF VGFA+GF VWQLTLLTLAVVPLIAVAGGAYT+ MSTLSEKGEAAY
Sbjct: 170 KTGHAMRYLSQFIVGFAIGFVYVWQLTLLTLAVVPLIAVAGGAYTVIMSTLSEKGEAAYA 229
Query: 62 EAGKVAEEIISQVRAVYAFVGEAKAIESYSHSLKEALKQGKKSGVAKGIGVGLTYGLLFC 121
EAGKVAEE+ISQ+R VY+FVGE KAIE+YS SL +ALK GKKSGVAKG+GVG TYGLLFC
Sbjct: 230 EAGKVAEEVISQIRTVYSFVGEDKAIEAYSKSLNKALKLGKKSGVAKGVGVGFTYGLLFC 289
Query: 122 AWALLLWYAGILVRHGDTNGGKAFTTIINVIFSGFALGQAAPNLAAIAKGKAAAANIISI 181
AWALLLWYA ILVRH NG KAFT IINVIFSGFALGQA PNLAAIAKG+AAAANII++
Sbjct: 290 AWALLLWYASILVRHHHINGAKAFTMIINVIFSGFALGQATPNLAAIAKGRAAAANIINM 349
Query: 182 IKENSHSSERPGDDGITLPKLAGQIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGP 241
IK++S S +DGI LP++ G+IEF +CF+YPSRP+MVFENL+FSV AGKTFA VGP
Sbjct: 350 IKKDSCPSNS-SEDGIELPEVDGKIEFCNICFSYPSRPNMVFENLSFSVSAGKTFAVVGP 408
Query: 242 SGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNI 301
SGSGKST+ISMVQR YEP SGKILLDGHDLK+L+LKWLREQ+GLVSQEPALFAT+IA+NI
Sbjct: 409 SGSGKSTVISMVQRFYEPNSGKILLDGHDLKTLRLKWLREQLGLVSQEPALFATTIADNI 468
Query: 302 LLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRN 361
L GKED MD+VIEAAK ANAHSFV+ LPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRN
Sbjct: 469 LFGKEDGRMDQVIEAAKVANAHSFVQQLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRN 528
Query: 362 PKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRDVDTIMVLKNGQVVE 421
PKILLLDEATSALDAESELIVQ+AL+KIMSNRTTI+VAHRLST+RDVDTI+VLKNGQV E
Sbjct: 529 PKILLLDEATSALDAESELIVQQALDKIMSNRTTIIVAHRLSTIRDVDTIIVLKNGQVAE 588
Query: 422 SGTHVDLISKGGEYAALVNLQSSEHLSNPSSICYSGSSRYSSFRDFPSSRRYDVEFESSK 481
SG H+DLISKGGEYA+LV LQ SEHL + +SI +S + SSF + P S + F+S
Sbjct: 589 SGNHLDLISKGGEYASLVGLQVSEHLKHSNSIGHSEADGNSSFGELPHSHNNPLNFKSIS 648
Query: 482 RRELQSSDQ-----SFAPSPSIWELLKLNAAEWPYAVLGSVGAILAGMEAPLFALGITHI 536
E+QS+D+ + A + SIWELLKLN+ EWP A+LGS+GA+LAGMEAP+FALGITH+
Sbjct: 649 TGEVQSNDERIDLANHASTASIWELLKLNSPEWPCALLGSLGAVLAGMEAPMFALGITHV 708
Query: 537 LTAFYSPHDSQIKRVVDQVALIFVGLAVVTIPVYLLQHYFYTLMGEHLTARVRLSMFSAI 596
LTAFY P S+++ + +V LIFVGLAV+TIP+YLLQHYFYTLMGE LTARVRLSMFSAI
Sbjct: 709 LTAFYYPDASEMRHEIQRVVLIFVGLAVITIPIYLLQHYFYTLMGERLTARVRLSMFSAI 768
Query: 597 LSNEIGWFDLDENNTGLLISTLAADATLVRSALADRLSIIVQNVALTVTAFVIAFILSWR 656
LSNEIGWFDLDENNTG L STLAADATLVRSALADRLS +VQNVALTVTA VIAF LSWR
Sbjct: 769 LSNEIGWFDLDENNTGSLTSTLAADATLVRSALADRLSTVVQNVALTVTACVIAFTLSWR 828
Query: 657 LAAVVAASLPLLIGAFVAEQLFLKGFGGDYNRAYSRATSVAREAIANIRTVAAYGIEKRI 716
+A+VV ASLPLL+GA +AEQLFLKGFGGDY+ AYSRATSVAREA+ NIRTVAA+G E+RI
Sbjct: 829 VASVVVASLPLLVGASIAEQLFLKGFGGDYH-AYSRATSVAREALTNIRTVAAFGAEERI 887
Query: 717 SIQFASELSQPNKQALLRGHISGFGYGVSQLLSLCSYALGLWYASVLIKQKGSNFGDIMK 776
SIQFASEL++PNKQALLRGH+SGFGYG++QL + SYALGLWYAS+LI + SNFG+IMK
Sbjct: 888 SIQFASELNKPNKQALLRGHVSGFGYGITQLFAFGSYALGLWYASILITHRDSNFGNIMK 947
Query: 777 SFMVLIITALAVAETLALAPDIVKGSQALGPVFGILYRKTAIQPDDPASKEVTEIKGNIE 836
SFMVLIITALA+AETLAL PDIVKG+QAL PVF IL+RKTAI P++P SK V +IKG+I+
Sbjct: 948 SFMVLIITALAIAETLALTPDIVKGTQALAPVFSILHRKTAIDPENPTSKMVADIKGDID 1007
Query: 837 LRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLI 896
RNV+FKYP RPDITIF+ LNLKV AGRSLAVVGQSGSGKST+I+L++RFYDPISGT+LI
Sbjct: 1008 FRNVNFKYPARPDITIFQQLNLKVPAGRSLAVVGQSGSGKSTIIALLLRFYDPISGTILI 1067
Query: 897 DGYDIRTLNLRSLRRKIGLVQQEPALFSTTIYENIKYGNEDASEIELMKATKAANAHGFI 956
DG +I+TLNL+SLR KIGLVQQEPALFSTTIYENI+YGNE+ASEIE+MKA KAANAHGFI
Sbjct: 1068 DGCEIKTLNLKSLRLKIGLVQQEPALFSTTIYENIRYGNENASEIEIMKAAKAANAHGFI 1127
Query: 957 SRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEAL 1016
SRMPEGYQ+HVGDRG+QLSGGQKQRVAIARA+LKNPSILLLDEATSALDT SE +QEAL
Sbjct: 1128 SRMPEGYQTHVGDRGLQLSGGQKQRVAIARAMLKNPSILLLDEATSALDTESEKTVQEAL 1187
Query: 1017 DKLMEGRTTIMVAHRLSTIRNADKIAVLQQGKVAEIGSHEQLLRKENGIYKQLIRLQQD 1075
+KLMEGRTTI+VAHRLSTIR+AD IAVLQ GKVAEIGSH QL+ K + IYKQL+ LQQ+
Sbjct: 1188 NKLMEGRTTILVAHRLSTIRDADSIAVLQHGKVAEIGSHTQLIGKPDSIYKQLVSLQQE 1246
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356552060|ref|XP_003544389.1| PREDICTED: ABC transporter B family member 13-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1702 bits (4409), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 844/1082 (78%), Positives = 948/1082 (87%), Gaps = 5/1082 (0%)
Query: 2 QTGHALRYLSQFFVGFAVGFTSVWQLTLLTLAVVPLIAVAGGAYTITMSTLSEKGEAAYG 61
+TGHA+RYLSQF VGFA+GFTSVWQLTLLTLAVVPLIAVAGGAYTI MSTLSEKGEAAY
Sbjct: 167 KTGHAIRYLSQFIVGFAIGFTSVWQLTLLTLAVVPLIAVAGGAYTIIMSTLSEKGEAAYA 226
Query: 62 EAGKVAEEIISQVRAVYAFVGEAKAIESYSHSLKEALKQGKKSGVAKGIGVGLTYGLLFC 121
EAGKVAEE+ISQVR VY+FVGE KA SYS SL ALK GKK G AKG+GVG TYGLLFC
Sbjct: 227 EAGKVAEEVISQVRTVYSFVGEEKAAGSYSKSLDNALKLGKKGGFAKGVGVGFTYGLLFC 286
Query: 122 AWALLLWYAGILVRHGDTNGGKAFTTIINVIFSGFALGQAAPNLAAIAKGKAAAANIISI 181
AWALLLWYA ILVRH TNGGKAFTTIINVIFSGFALGQAAPNL +IAKG+ AAANI+++
Sbjct: 287 AWALLLWYASILVRHHKTNGGKAFTTIINVIFSGFALGQAAPNLGSIAKGRVAAANIMNM 346
Query: 182 IKENSHSSERPGDDGITLPKLAGQIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGP 241
I S +S++ DDG +P++AG+IEF EVCFAYPSR +M+FE L+FSV AGKT A VGP
Sbjct: 347 IASASRNSKKL-DDGNIVPQVAGEIEFCEVCFAYPSRSNMIFEKLSFSVSAGKTIAVVGP 405
Query: 242 SGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNI 301
SGSGKSTI+S++QR Y+PTSGKILLDG+DLK+LQLKWLREQMGLVSQEPALFAT+IA NI
Sbjct: 406 SGSGKSTIVSLIQRFYDPTSGKILLDGYDLKNLQLKWLREQMGLVSQEPALFATTIAGNI 465
Query: 302 LLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRN 361
L GKEDA MD+VI+AA AANAHSF++GLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRN
Sbjct: 466 LFGKEDADMDKVIQAAMAANAHSFIQGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRN 525
Query: 362 PKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRDVDTIMVLKNGQVVE 421
PK+LLLDEATSALDAESELIVQ+ALEKIMSNRTTIVVAHRLST+RDVDTI+VLKNGQVVE
Sbjct: 526 PKVLLLDEATSALDAESELIVQQALEKIMSNRTTIVVAHRLSTIRDVDTIVVLKNGQVVE 585
Query: 422 SGTHVDLISKGGEYAALVNLQSSEHLSNPSSICYSGSSRYSSFRDFPSSRRYDVEFESSK 481
SGTH++L+S GEY LV+LQ+S+ L+N SI S SSR SSFR+ + + +
Sbjct: 586 SGTHLELMSNNGEYVNLVSLQASQSLTNSRSISCSESSRNSSFREPSDNLTLEEPLKLDT 645
Query: 482 RRELQSSDQSF----APSPSIWELLKLNAAEWPYAVLGSVGAILAGMEAPLFALGITHIL 537
ELQS DQ +PSI +LLKLNA EWPYA+LGSVGAILAGMEAPLFALGITHIL
Sbjct: 646 AAELQSRDQHLPSKTTSTPSILDLLKLNAPEWPYAILGSVGAILAGMEAPLFALGITHIL 705
Query: 538 TAFYSPHDSQIKRVVDQVALIFVGLAVVTIPVYLLQHYFYTLMGEHLTARVRLSMFSAIL 597
TAFYSP S+IK+ VD VA IF+G+AV+TIP+YLL HYFYTLMGE LTARVRL MFSAIL
Sbjct: 706 TAFYSPQGSKIKQEVDWVAFIFLGVAVITIPIYLLLHYFYTLMGERLTARVRLLMFSAIL 765
Query: 598 SNEIGWFDLDENNTGLLISTLAADATLVRSALADRLSIIVQNVALTVTAFVIAFILSWRL 657
+NE+ WFD+DE+NTG L + LAADATLVRSALADRLS IVQNVALTVTAFVI F LSW+L
Sbjct: 766 NNEVAWFDMDEHNTGSLTAMLAADATLVRSALADRLSTIVQNVALTVTAFVIGFTLSWKL 825
Query: 658 AAVVAASLPLLIGAFVAEQLFLKGFGGDYNRAYSRATSVAREAIANIRTVAAYGIEKRIS 717
AVV A LPLLIGA + EQLFLKGFGGDY AYSRATS+AREAIANIRTVAA+G E RIS
Sbjct: 826 TAVVVACLPLLIGASITEQLFLKGFGGDYGHAYSRATSLAREAIANIRTVAAFGAEDRIS 885
Query: 718 IQFASELSQPNKQALLRGHISGFGYGVSQLLSLCSYALGLWYASVLIKQKGSNFGDIMKS 777
IQFASEL++PNKQALLRGHISGFGYG++QLL+ CSYALGLWYASVLIK+ SNFGDIMKS
Sbjct: 886 IQFASELNKPNKQALLRGHISGFGYGITQLLAFCSYALGLWYASVLIKKNESNFGDIMKS 945
Query: 778 FMVLIITALAVAETLALAPDIVKGSQALGPVFGILYRKTAIQPDDPASKEVTEIKGNIEL 837
FMVLIIT+LA+AETLAL PDIVKGSQALG VFGI+ R+TAI P+DP SK +T++KG IE
Sbjct: 946 FMVLIITSLAIAETLALTPDIVKGSQALGSVFGIIQRRTAITPNDPNSKMITDVKGEIEF 1005
Query: 838 RNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLID 897
RNVSFKYP+RPDITIF+NLNL V AG+SLAVVGQSGSGKSTVISLVMRFYDP G+VLID
Sbjct: 1006 RNVSFKYPMRPDITIFQNLNLIVPAGKSLAVVGQSGSGKSTVISLVMRFYDPDLGSVLID 1065
Query: 898 GYDIRTLNLRSLRRKIGLVQQEPALFSTTIYENIKYGNEDASEIELMKATKAANAHGFIS 957
DI++LNLRSLR +IGLVQQEPALFSTT+YENIKYG E+ASEIE+MKA KAANAH FIS
Sbjct: 1066 ECDIKSLNLRSLRLRIGLVQQEPALFSTTVYENIKYGKEEASEIEVMKAAKAANAHEFIS 1125
Query: 958 RMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEALD 1017
RMPEGY++ VG+RG QLSGGQKQRVAIARAILK+PSILLLDEATSALDT SE L+QEALD
Sbjct: 1126 RMPEGYKTEVGERGAQLSGGQKQRVAIARAILKDPSILLLDEATSALDTVSERLVQEALD 1185
Query: 1018 KLMEGRTTIMVAHRLSTIRNADKIAVLQQGKVAEIGSHEQLLRKENGIYKQLIRLQQDKN 1077
KLMEGRTTI+VAHRLST+R+AD IAVLQ G+VAE+GSHE+L+ K IYKQL+ LQ +
Sbjct: 1186 KLMEGRTTILVAHRLSTVRDADSIAVLQNGRVAEMGSHERLMAKPASIYKQLVSLQHETR 1245
Query: 1078 PE 1079
+
Sbjct: 1246 DQ 1247
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356562417|ref|XP_003549468.1| PREDICTED: ABC transporter B family member 13-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1699 bits (4399), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 842/1078 (78%), Positives = 950/1078 (88%), Gaps = 5/1078 (0%)
Query: 2 QTGHALRYLSQFFVGFAVGFTSVWQLTLLTLAVVPLIAVAGGAYTITMSTLSEKGEAAYG 61
+TGHA+RYLSQF VGFA+GFTSVWQLTLLTLAVVPLIAVAGGAYTI MSTLSEKGEAAY
Sbjct: 167 KTGHAIRYLSQFIVGFAIGFTSVWQLTLLTLAVVPLIAVAGGAYTIIMSTLSEKGEAAYA 226
Query: 62 EAGKVAEEIISQVRAVYAFVGEAKAIESYSHSLKEALKQGKKSGVAKGIGVGLTYGLLFC 121
EAGKVA+E+ISQVR VY+FVGE KA+ SYS SL ALK GKK G+AKGIGVG TYGLLFC
Sbjct: 227 EAGKVAQEVISQVRTVYSFVGEEKAVGSYSKSLDNALKLGKKGGLAKGIGVGFTYGLLFC 286
Query: 122 AWALLLWYAGILVRHGDTNGGKAFTTIINVIFSGFALGQAAPNLAAIAKGKAAAANIISI 181
AWALLLWYA ILVR+ TNGGKAFTTIINVIFSGFALGQAAPNL +IAKG+AAA NI+++
Sbjct: 287 AWALLLWYASILVRNHKTNGGKAFTTIINVIFSGFALGQAAPNLGSIAKGRAAAGNIMNM 346
Query: 182 IKENSHSSERPGDDGITLPKLAGQIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGP 241
I S +S++ DDG +P++AG+IEF EVCFAYPSR +M+FE L+FSV AGKT A VGP
Sbjct: 347 IASTSRNSKK-FDDGNVVPQVAGEIEFCEVCFAYPSRSNMIFEKLSFSVSAGKTIAIVGP 405
Query: 242 SGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNI 301
SGSGKSTI+S++QR Y+PTSGKILLDG+DLK+LQLKWLREQMGLVSQEPALFAT+IA NI
Sbjct: 406 SGSGKSTIVSLIQRFYDPTSGKILLDGYDLKNLQLKWLREQMGLVSQEPALFATTIAGNI 465
Query: 302 LLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRN 361
L GKEDA MD+VI+AA AANAHSF++GLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRN
Sbjct: 466 LFGKEDADMDKVIQAAMAANAHSFIQGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRN 525
Query: 362 PKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRDVDTIMVLKNGQVVE 421
PK+LLLDEATSALDAESELIVQ+ALEKIMSNRTTIVVAHRLST+RDVDTI+VLKNGQVVE
Sbjct: 526 PKVLLLDEATSALDAESELIVQQALEKIMSNRTTIVVAHRLSTIRDVDTIVVLKNGQVVE 585
Query: 422 SGTHVDLISKGGEYAALVNLQSSEHLSNPSSICYSGSSRYSSFRDFPSSRRYDVEFESSK 481
SGTH++L+S GEY LV+LQ+S++L+N SI S SSR SSFR+ + + + +
Sbjct: 586 SGTHLELMSNNGEYVNLVSLQASQNLTNSRSISRSESSRNSSFREPSDNLTLEEQLKLDA 645
Query: 482 RRELQSSDQSF----APSPSIWELLKLNAAEWPYAVLGSVGAILAGMEAPLFALGITHIL 537
ELQS DQ +PSI +LLKLNA EWPYA+LGSVGAILAGMEAPLFALGITHIL
Sbjct: 646 AAELQSRDQHLPSKTTSTPSILDLLKLNAPEWPYAILGSVGAILAGMEAPLFALGITHIL 705
Query: 538 TAFYSPHDSQIKRVVDQVALIFVGLAVVTIPVYLLQHYFYTLMGEHLTARVRLSMFSAIL 597
TAFYSP S+IK+ VD+VA IF+G+AV+TIP+YLL HYFYTLMGE LTARVRL MFSAIL
Sbjct: 706 TAFYSPQGSKIKQEVDRVAFIFLGVAVITIPIYLLLHYFYTLMGERLTARVRLLMFSAIL 765
Query: 598 SNEIGWFDLDENNTGLLISTLAADATLVRSALADRLSIIVQNVALTVTAFVIAFILSWRL 657
+NE+ WFD DENNTG L + LAADATLVRSALADRLS IVQNVALTVTAFVI F LSW+L
Sbjct: 766 NNEVAWFDKDENNTGSLTAMLAADATLVRSALADRLSTIVQNVALTVTAFVIGFTLSWKL 825
Query: 658 AAVVAASLPLLIGAFVAEQLFLKGFGGDYNRAYSRATSVAREAIANIRTVAAYGIEKRIS 717
AVV A LPLLIGA + EQLFLKGFGGDY AYSRATS+AREAIANIRTVAA+G E R+S
Sbjct: 826 TAVVVACLPLLIGASITEQLFLKGFGGDYGHAYSRATSLAREAIANIRTVAAFGAEDRVS 885
Query: 718 IQFASELSQPNKQALLRGHISGFGYGVSQLLSLCSYALGLWYASVLIKQKGSNFGDIMKS 777
QFASEL++PNKQALLRGHISGFGYG++QLL+ CSYALGLWYASVLIK+ SNFGDIMKS
Sbjct: 886 TQFASELNKPNKQALLRGHISGFGYGITQLLAFCSYALGLWYASVLIKKNESNFGDIMKS 945
Query: 778 FMVLIITALAVAETLALAPDIVKGSQALGPVFGILYRKTAIQPDDPASKEVTEIKGNIEL 837
FMVLIIT+LA+AETLAL PDIVKGSQALG VFGI+ R+TAI P+D SK VT++KG IE
Sbjct: 946 FMVLIITSLAIAETLALTPDIVKGSQALGSVFGIIQRRTAITPNDTNSKIVTDVKGEIEF 1005
Query: 838 RNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLID 897
RNVSFKYP+RPDITIF+NLNL+V AG+SLAVVGQSGSGKSTVISLVMRFYDP SG VL+D
Sbjct: 1006 RNVSFKYPMRPDITIFQNLNLRVPAGKSLAVVGQSGSGKSTVISLVMRFYDPDSGLVLVD 1065
Query: 898 GYDIRTLNLRSLRRKIGLVQQEPALFSTTIYENIKYGNEDASEIELMKATKAANAHGFIS 957
DI+ LNLRSLR +IGLVQQEPALFSTT+YENIKYG E+ASEIE+MKA KAANAH FIS
Sbjct: 1066 ECDIKNLNLRSLRLRIGLVQQEPALFSTTVYENIKYGKEEASEIEVMKAAKAANAHEFIS 1125
Query: 958 RMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEALD 1017
RMPEGY++ VG+RGVQLSGGQKQRVAIARAILK+PSILLLDEATSALDT SE L+QEALD
Sbjct: 1126 RMPEGYKTEVGERGVQLSGGQKQRVAIARAILKDPSILLLDEATSALDTVSERLVQEALD 1185
Query: 1018 KLMEGRTTIMVAHRLSTIRNADKIAVLQQGKVAEIGSHEQLLRKENGIYKQLIRLQQD 1075
KLMEGRTTI+VAHRLST+R+A+ IAVLQ G+VAE+GSHE+L+ K IYKQL+ LQ +
Sbjct: 1186 KLMEGRTTILVAHRLSTVRDANSIAVLQNGRVAEMGSHERLMAKSGSIYKQLVSLQHE 1243
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224065781|ref|XP_002301961.1| multidrug/pheromone exporter, MDR family, ABC transporter family [Populus trichocarpa] gi|222843687|gb|EEE81234.1| multidrug/pheromone exporter, MDR family, ABC transporter family [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 1660 bits (4298), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 814/1081 (75%), Positives = 951/1081 (87%), Gaps = 21/1081 (1%)
Query: 2 QTGHALRYLSQFFVGFAVGFTSVWQLTLLTLAVVPLIAVAGGAYTITMSTLSEKGEAAYG 61
+TGHA+RYLSQFF+GF GF SVWQLTLLTLAVVPL+AVAGGAYTI MSTLSEKGEAAY
Sbjct: 151 KTGHAVRYLSQFFIGFVFGFKSVWQLTLLTLAVVPLMAVAGGAYTIIMSTLSEKGEAAYA 210
Query: 62 EAGKVAEEIISQVRAVYAFVGEAKAIESYSHSLKEALKQGKKSGVAKGIGVGLTYGLLFC 121
EAGKVA+E ISQ+R VY+FVGE KA+E YS SLK+ALK GKKSGVAKG+G+G TYGLLFC
Sbjct: 211 EAGKVADEAISQIRTVYSFVGEEKALEEYSKSLKKALKLGKKSGVAKGVGIGSTYGLLFC 270
Query: 122 AWALLLWYAGILVRHGDTNGGKAFTTIINVIFSGFALGQAAPNLAAIAKGKAAAANIISI 181
AW++LLWY+ ILVR GDTNG KAFT I+NVIFSGFALGQAAPN+AAI+KG+AAAA+I+S+
Sbjct: 271 AWSMLLWYSSILVRRGDTNGAKAFTVILNVIFSGFALGQAAPNIAAISKGRAAAASIMSM 330
Query: 182 IKENSHSSERPGDDGITLPKLAGQIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGP 241
I+ +S S+ DGI +PK++GQIEF EVCF+YPSR +MVFENL+FS+ AGK FA VGP
Sbjct: 331 IETDSSPSKNL-VDGIVMPKVSGQIEFCEVCFSYPSRSNMVFENLSFSISAGKNFAVVGP 389
Query: 242 SGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNI 301
SGSGKST+ISMVQR YEPTSGKILLDGHDLK+L+LKWLREQMGLVSQEPALFAT+IA NI
Sbjct: 390 SGSGKSTVISMVQRFYEPTSGKILLDGHDLKTLELKWLREQMGLVSQEPALFATTIAGNI 449
Query: 302 LLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRN 361
L GKEDASMD++ EAAKAAN HSFV LPDGY TQVGEGGTQLSGGQKQR+AIARAVLRN
Sbjct: 450 LFGKEDASMDQIYEAAKAANVHSFVLQLPDGYHTQVGEGGTQLSGGQKQRLAIARAVLRN 509
Query: 362 PKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRDVDTIMVLKNGQVVE 421
PKILLLDEATSALDAESELIVQ+ALEKIM+NRTTIVVAHRLST+RDVDTI+VLKNG VVE
Sbjct: 510 PKILLLDEATSALDAESELIVQQALEKIMANRTTIVVAHRLSTIRDVDTIIVLKNGLVVE 569
Query: 422 SGTHVDLISKGGEYAALVNLQSSEHLSNPSSICYSGSSRYSSFRDFPSSRRYDVEFESSK 481
SG+H++LISKGGEYA++ +LQ SEH+++ SSI +SG++ SSFR+ SS+ +V
Sbjct: 570 SGSHLELISKGGEYASMASLQVSEHVTDASSI-HSGTAGKSSFRELTSSQNQEV-----T 623
Query: 482 RRELQSSDQS-----FAPSPSIWELLKLNAAEWPYAVLGSVGAILAGMEAPLFALGITHI 536
REL+S+D++ F+P+PSIWEL+KLNA EWPYAVLGSVGA++AGMEAPLFALGITH+
Sbjct: 624 TRELKSNDENLSPANFSPTPSIWELVKLNAPEWPYAVLGSVGAMMAGMEAPLFALGITHM 683
Query: 537 LTAFYSPHDSQIKRVVDQVALIFVGLAVVTIPVYLLQHYFYTLMGEHLTARVRLSMFSAI 596
LTAFYSP +SQ+K+ V VALIFVG AVVT+P+Y+LQHYFYTLMGE L RVRLSMFSAI
Sbjct: 684 LTAFYSPDNSQMKKEVHLVALIFVGAAVVTVPIYILQHYFYTLMGERLITRVRLSMFSAI 743
Query: 597 LSNEIGWFDLDENNTGLLISTLAADATLVRSALADRLSIIVQNVALTVTAFVIAFILSWR 656
L NEIGWFDLDEN+TG L STLAADATLVRS LADRLS +VQNV+LTVTAFVI F LSWR
Sbjct: 744 LCNEIGWFDLDENSTGSLTSTLAADATLVRSTLADRLSTMVQNVSLTVTAFVIGFSLSWR 803
Query: 657 LAAVVAASLPLLIGAFVAEQLFLKGFGGDYNRAYSRATSVAREAIANIRTVAAYGIEKRI 716
++AV+ A PLLIGA + E + R+Y+RA +VAREAIANIRTVA++G E+RI
Sbjct: 804 VSAVIIACFPLLIGAAITEANY---------RSYTRANAVAREAIANIRTVASFGAEERI 854
Query: 717 SIQFASELSQPNKQALLRGHISGFGYGVSQLLSLCSYALGLWYASVLIKQKGSNFGDIMK 776
+ QFASEL++PNKQ LL+GHISG GYG SQ C+YALG+WYASV+I S+F +MK
Sbjct: 855 AHQFASELNKPNKQVLLQGHISGIGYGASQFFCFCAYALGIWYASVVISHNESDFDHVMK 914
Query: 777 SFMVLIITALAVAETLALAPDIVKGSQALGPVFGILYRKTAIQPDDPASKEVTEIKGNIE 836
SFMVL++T+ A+AET+AL PDI+KGSQAL VF IL+RKTA+ PDDP SK +T+IKG++E
Sbjct: 915 SFMVLVMTSYAIAETVALTPDIMKGSQALESVFSILHRKTAMDPDDPTSKVITDIKGDVE 974
Query: 837 LRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLI 896
LR+VSFKYP RPD IFE+LNLKVSAG+SLAVVGQSGSGKSTVI+L++RFYDPISGTVLI
Sbjct: 975 LRHVSFKYPARPDTIIFEDLNLKVSAGKSLAVVGQSGSGKSTVIALILRFYDPISGTVLI 1034
Query: 897 DGYDIRTLNLRSLRRKIGLVQQEPALFSTTIYENIKYGNEDASEIELMKATKAANAHGFI 956
DGYD++TLNL+SLRRKIGLVQQEPALFSTTIYENIKYGN++ASEIE+MKA KAANAHGFI
Sbjct: 1035 DGYDVKTLNLKSLRRKIGLVQQEPALFSTTIYENIKYGNKNASEIEVMKAAKAANAHGFI 1094
Query: 957 SRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEAL 1016
SRM EGY +HVGDRG+QLSGGQKQR+AIARAILK+PSILLLDEATSALDTASE L+QEAL
Sbjct: 1095 SRMHEGYHTHVGDRGLQLSGGQKQRIAIARAILKDPSILLLDEATSALDTASEKLVQEAL 1154
Query: 1017 DKLMEGRTTIMVAHRLSTIRNADKIAVLQQGKVAEIGSHEQLLRKENGIYKQLIRLQQDK 1076
DKLMEGRTT++VAHRLST+R+AD IAV+Q G+V EIGSH QL+ K +G+YKQL+ LQQ+K
Sbjct: 1155 DKLMEGRTTVLVAHRLSTVRDADSIAVIQHGRVVEIGSHNQLIGKPSGVYKQLVSLQQEK 1214
Query: 1077 N 1077
+
Sbjct: 1215 S 1215
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|317106602|dbj|BAJ53110.1| JHL20J20.17 [Jatropha curcas] | Back alignment and taxonomy information |
|---|
Score = 1649 bits (4269), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 837/1080 (77%), Positives = 951/1080 (88%), Gaps = 3/1080 (0%)
Query: 2 QTGHALRYLSQFFVGFAVGFTSVWQLTLLTLAVVPLIAVAGGAYTITMSTLSEKGEAAYG 61
+TGHA+RYLSQF VGFAVGF SVWQLTLLTLAVVPLIAVAGGAYTI MSTLSEKGEAAY
Sbjct: 58 KTGHAIRYLSQFVVGFAVGFASVWQLTLLTLAVVPLIAVAGGAYTIIMSTLSEKGEAAYA 117
Query: 62 EAGKVAEEIISQVRAVYAFVGEAKAIESYSHSLKEALKQGKKSGVAKGIGVGLTYGLLFC 121
EAGKVA+E+ISQ+R VY+FVGE KAIE+YS LK+ALK GKK GVAKG+GVG TYGLLFC
Sbjct: 118 EAGKVADEVISQIRTVYSFVGEDKAIETYSRYLKKALKVGKKGGVAKGVGVGFTYGLLFC 177
Query: 122 AWALLLWYAGILVRHGDTNGGKAFTTIINVIFSGFALGQAAPNLAAIAKGKAAAANIISI 181
AWALLLWYA ILVRH TNG KAFT IINVIFSGFALGQA PNLAAIAKG+AAAANIIS+
Sbjct: 178 AWALLLWYASILVRHHVTNGAKAFTMIINVIFSGFALGQATPNLAAIAKGRAAAANIISM 237
Query: 182 IKENSHSSERPGDDGITLPKLAGQIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGP 241
IK +S+ S + +DG LPK+ G+IEF VCF YPSR VFENL+FS+ AGKTFA VGP
Sbjct: 238 IKTDSNPS-KISEDGAELPKIDGKIEFCNVCFTYPSRTGKVFENLSFSISAGKTFAVVGP 296
Query: 242 SGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNI 301
SGSGKSTIISMVQR Y+P SGKILLDGHD+K+L+LKWLREQMGLVSQEPALFAT+IA+NI
Sbjct: 297 SGSGKSTIISMVQRFYDPNSGKILLDGHDIKALRLKWLREQMGLVSQEPALFATTIADNI 356
Query: 302 LLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRN 361
L GKE ASM +VI+AA+AANAHSF++ LPDGY TQVGEGGTQLSGGQKQRIAIARAVLRN
Sbjct: 357 LFGKEAASMSQVIQAAEAANAHSFIQQLPDGYHTQVGEGGTQLSGGQKQRIAIARAVLRN 416
Query: 362 PKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRDVDTIMVLKNGQVVE 421
P+ILLLDEATSALDAESELIVQ+AL+KIMS RTTI+VAHRLST+RDVD+I+VLKNGQV E
Sbjct: 417 PRILLLDEATSALDAESELIVQQALDKIMSYRTTIIVAHRLSTIRDVDSIIVLKNGQVAE 476
Query: 422 SGTHVDLISKGGEYAALVNLQSSEHLSNPSSICYSGSSRYSSFRDFPSSRRYDVEFESSK 481
SG H+DLISKGGEYA LV+LQ SEH ++ SS+ +S + R SFR+ + +F+S
Sbjct: 477 SGNHLDLISKGGEYATLVSLQVSEHPTHSSSMDHSEAVRSPSFRELSHGQNNQQDFKSIS 536
Query: 482 RRELQSSDQS-FAPSPSIWELLKLNAAEWPYAVLGSVGAILAGMEAPLFALGITHILTAF 540
+RE QS +S ++ +P+I EL+KLNA EWPYA+LGSVGAIL GMEAPLFAL I+H+LTAF
Sbjct: 537 KREGQSDHESMYSATPTIGELVKLNAPEWPYALLGSVGAILGGMEAPLFALLISHVLTAF 596
Query: 541 YSPHDSQIKRVVDQVALIFVGLAVVTIPVYLLQHYFYTLMGEHLTARVRLSMFSAILSNE 600
YSP S++K + +VA IFVGLAVVTIP+YLLQHYFYTLMGE LTARVRLSMF+AILSNE
Sbjct: 597 YSPDVSEMKHEIRRVAFIFVGLAVVTIPIYLLQHYFYTLMGERLTARVRLSMFTAILSNE 656
Query: 601 IGWFDLDENNTGLLISTLAADATLVRSALADRLSIIVQNVALTVTAFVIAFILSWRLAAV 660
IGWFDLDENNTG L STLAADATLVRSALADRLS IVQNVALT TA VIAF LSWR+AAV
Sbjct: 657 IGWFDLDENNTGSLTSTLAADATLVRSALADRLSTIVQNVALTATACVIAFTLSWRIAAV 716
Query: 661 VAASLPLLIGAFVAEQLFLKGFGGDYNRAYSRATSVAREAIANIRTVAAYGIEKRISIQF 720
V AS PLLIGA +AE LFLKGFGGDY +AYS+ATS+AREA+ NIRTVAA+G E+RIS +F
Sbjct: 717 VVASFPLLIGASIAELLFLKGFGGDY-QAYSKATSLAREALTNIRTVAAFGAEERISFEF 775
Query: 721 ASELSQPNKQALLRGHISGFGYGVSQLLSLCSYALGLWYASVLIKQKGSNFGDIMKSFMV 780
AS+L++PNKQALLRGH+SGFGYG++QL + SYALGLWYASVLI K SNFG I KSFMV
Sbjct: 776 ASQLNKPNKQALLRGHMSGFGYGLTQLFAFGSYALGLWYASVLITHKESNFGHITKSFMV 835
Query: 781 LIITALAVAETLALAPDIVKGSQALGPVFGILYRKTAIQPDDPASKEVTEIKGNIELRNV 840
LI+TAL+VAETLALAPDIVKGSQAL VF I++RKTAI P++ SK VT I G+IE RNV
Sbjct: 836 LIVTALSVAETLALAPDIVKGSQALESVFTIIHRKTAIDPNNSTSKVVTYINGDIEFRNV 895
Query: 841 SFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYD 900
+FKYP RP ITIFE LNL V AG+SLAVVGQSGSGKST+ISL++RFYDPISGTVLIDG D
Sbjct: 896 TFKYPARPHITIFERLNLTVPAGKSLAVVGQSGSGKSTIISLILRFYDPISGTVLIDGCD 955
Query: 901 IRTLNLRSLRRKIGLVQQEPALFSTTIYENIKYGNEDASEIELMKATKAANAHGFISRMP 960
I++LNL+SLR KIGLVQQEPALFSTTIYENIKYGNE+ASE+E+MKA KAANAHGFISRMP
Sbjct: 956 IKSLNLKSLRLKIGLVQQEPALFSTTIYENIKYGNENASEMEIMKAAKAANAHGFISRMP 1015
Query: 961 EGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLM 1020
EGYQ+HVG+RG+QLSGGQKQRVAIARAILK+PSILLLDEATSALDT SE ++QEALD LM
Sbjct: 1016 EGYQTHVGNRGLQLSGGQKQRVAIARAILKDPSILLLDEATSALDTTSEKVVQEALDMLM 1075
Query: 1021 EGRTTIMVAHRLSTIRNADKIAVLQQGKVAEIGSHEQLLRKENGIYKQLIRLQQDKNPEA 1080
EGRTT++VAHRLSTIRNAD IAVLQ G+VAEIGSH QL+ K + IY+QL+ LQQ+K+ E+
Sbjct: 1076 EGRTTVLVAHRLSTIRNADSIAVLQNGRVAEIGSHMQLMGKPDSIYRQLVSLQQEKSTES 1135
|
Source: Jatropha curcas Species: Jatropha curcas Genus: Jatropha Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449437414|ref|XP_004136487.1| PREDICTED: ABC transporter B family member 13-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1647 bits (4265), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 797/1086 (73%), Positives = 942/1086 (86%), Gaps = 7/1086 (0%)
Query: 2 QTGHALRYLSQFFVGFAVGFTSVWQLTLLTLAVVPLIAVAGGAYTITMSTLSEKGEAAYG 61
+TGHA+RY SQF VGFA+GFTSVW+LTLLTLA+VPL+A+AG AYT+ MSTLS+KGEAAY
Sbjct: 198 KTGHAMRYFSQFIVGFAIGFTSVWKLTLLTLAIVPLVAIAGVAYTVIMSTLSQKGEAAYA 257
Query: 62 EAGKVAEEIISQVRAVYAFVGEAKAIESYSHSLKEALKQGKKSGVAKGIGVGLTYGLLFC 121
+AGK AEE+I+Q+R VY++VGE+KA+E YS SL+ ALK GK+SG AKG GVG TY LLFC
Sbjct: 258 QAGKTAEEVIAQIRTVYSYVGESKALEKYSESLQNALKLGKRSGFAKGFGVGFTYSLLFC 317
Query: 122 AWALLLWYAGILVRHGDTNGGKAFTTIINVIFSGFALGQAAPNLAAIAKGKAAAANIISI 181
AWALLLWYA ILV H +TNGGKAFTTIINVIFSGFALGQA PNLAAIAKG+ AAANI S+
Sbjct: 318 AWALLLWYASILVLHHETNGGKAFTTIINVIFSGFALGQAMPNLAAIAKGRVAAANIFSM 377
Query: 182 IKENSHSSERPGDDGITLPKLAGQIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGP 241
I + SS R ++G+ L +AG+IEFSEV FAYPSRP ++F+ L+FS+ AG+T A VGP
Sbjct: 378 IDADYESSSR-SNNGVALSSVAGKIEFSEVSFAYPSRPQLIFDKLSFSISAGRTVAVVGP 436
Query: 242 SGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNI 301
SGSGKSTI+SMVQR YEP+SGKILLDGHDL++L+LKWLR QMGLVSQEPALF T+IA NI
Sbjct: 437 SGSGKSTIVSMVQRFYEPSSGKILLDGHDLRTLELKWLRRQMGLVSQEPALFNTTIAANI 496
Query: 302 LLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRN 361
L G+E+A+MD +I AA+ ANAHSF++ LPDGY TQVGE G QLSGGQKQRIAIARAVLRN
Sbjct: 497 LFGQENATMDEIIAAAEVANAHSFIQELPDGYSTQVGERGIQLSGGQKQRIAIARAVLRN 556
Query: 362 PKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRDVDTIMVLKNGQVVE 421
PKILLLDEATSALD+ESELIVQ+AL +IM NRTTI++AHRLST+++ DTI VLKNGQ+VE
Sbjct: 557 PKILLLDEATSALDSESELIVQQALVRIMLNRTTIIIAHRLSTIQEADTIFVLKNGQIVE 616
Query: 422 SGTHVDLISKGGEYAALVNLQSSEHLSNPSSICYSGSSRYSSFRDFPSSRRYDVEFESSK 481
SG H +L+SK GEYAAL +LQ +++ S I GSSR+SSF++ SS ++ +S +
Sbjct: 617 SGNHSELMSKNGEYAALESLQLPGQVNDSSIISPPGSSRHSSFQEAFSSHNSILDSKSFR 676
Query: 482 RRELQSSDQ-----SFAPSPSIWELLKLNAAEWPYAVLGSVGAILAGMEAPLFALGITHI 536
+LQS+++ +++P PSIWELLKLNA EWPYA+LGS+GAILAG++APLFALGITH+
Sbjct: 677 ETKLQSANKDLKTLNYSP-PSIWELLKLNAREWPYAILGSIGAILAGIQAPLFALGITHV 735
Query: 537 LTAFYSPHDSQIKRVVDQVALIFVGLAVVTIPVYLLQHYFYTLMGEHLTARVRLSMFSAI 596
L+AFYSPH SQIK V VA +FVG+A+ TIP+YLLQHYFYTLMGE LTARVRL +FSAI
Sbjct: 736 LSAFYSPHHSQIKEEVHHVAFMFVGVAIFTIPIYLLQHYFYTLMGERLTARVRLLLFSAI 795
Query: 597 LSNEIGWFDLDENNTGLLISTLAADATLVRSALADRLSIIVQNVALTVTAFVIAFILSWR 656
LSNE+GWFD DENNTG L S LA++ATLVRSALADR+S IVQNVALTV+AFVIAFI SWR
Sbjct: 796 LSNEVGWFDFDENNTGALTSILASNATLVRSALADRISTIVQNVALTVSAFVIAFIFSWR 855
Query: 657 LAAVVAASLPLLIGAFVAEQLFLKGFGGDYNRAYSRATSVAREAIANIRTVAAYGIEKRI 716
LAAVV ASLPLLIGA + EQLFLKGFGGDY +AY+RAT+VA EAIANIRTVAA+G E++I
Sbjct: 856 LAAVVVASLPLLIGASITEQLFLKGFGGDYGQAYNRATAVAHEAIANIRTVAAFGAEEKI 915
Query: 717 SIQFASELSQPNKQALLRGHISGFGYGVSQLLSLCSYALGLWYASVLIKQKGSNFGDIMK 776
S QFA EL++PNKQA LRGH++GFGYG+SQ + CSYALGLWYAS LIK + SNFGDIMK
Sbjct: 916 SSQFAFELNKPNKQAFLRGHVAGFGYGISQFFAFCSYALGLWYASTLIKHRHSNFGDIMK 975
Query: 777 SFMVLIITALAVAETLALAPDIVKGSQALGPVFGILYRKTAIQPDDPASKEVTEIKGNIE 836
SFMVLIIT+LA+AETLAL PDIVKGSQALG VF IL+RKT I ++P+++ VT I G+IE
Sbjct: 976 SFMVLIITSLAIAETLALTPDIVKGSQALGSVFNILHRKTIIDSNNPSAEMVTNIIGDIE 1035
Query: 837 LRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLI 896
NVSFKYP RPDIT+FE+LNL+VSAG+SLAVVGQSGSGKSTVI+LVMRFYDPISGT+LI
Sbjct: 1036 FNNVSFKYPARPDITVFEDLNLRVSAGKSLAVVGQSGSGKSTVIALVMRFYDPISGTILI 1095
Query: 897 DGYDIRTLNLRSLRRKIGLVQQEPALFSTTIYENIKYGNEDASEIELMKATKAANAHGFI 956
DG DI++LNLRSLR KIGLVQQEPALFSTTIYENIKYGN++ASEIE+MKA KAANAHGFI
Sbjct: 1096 DGRDIKSLNLRSLRMKIGLVQQEPALFSTTIYENIKYGNQEASEIEVMKAAKAANAHGFI 1155
Query: 957 SRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEAL 1016
SRMP YQ+HVGDRGVQLSGGQKQRVAIARAILK+PSILLLDEATSALD ASE +QEAL
Sbjct: 1156 SRMPNSYQTHVGDRGVQLSGGQKQRVAIARAILKDPSILLLDEATSALDAASERQVQEAL 1215
Query: 1017 DKLMEGRTTIMVAHRLSTIRNADKIAVLQQGKVAEIGSHEQLLRKENGIYKQLIRLQQDK 1076
D+LMEGRTTI+VAHRL+TIR+A++IAVL+ G+V EIGSH+ LL+ + IYKQL+ LQ +
Sbjct: 1216 DRLMEGRTTILVAHRLTTIRDANRIAVLKSGRVVEIGSHDSLLKNPHSIYKQLVNLQHET 1275
Query: 1077 NPEAME 1082
+++E
Sbjct: 1276 TVQSLE 1281
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449515526|ref|XP_004164800.1| PREDICTED: LOW QUALITY PROTEIN: ABC transporter B family member 13-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1646 bits (4262), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 797/1086 (73%), Positives = 942/1086 (86%), Gaps = 7/1086 (0%)
Query: 2 QTGHALRYLSQFFVGFAVGFTSVWQLTLLTLAVVPLIAVAGGAYTITMSTLSEKGEAAYG 61
+TGHA+RY SQF VGFA+GFTSVW+LTLLTLA+VPL+A+AG AYT+ MSTLS+KGEAAY
Sbjct: 165 KTGHAMRYFSQFIVGFAIGFTSVWKLTLLTLAIVPLVAIAGVAYTVIMSTLSQKGEAAYA 224
Query: 62 EAGKVAEEIISQVRAVYAFVGEAKAIESYSHSLKEALKQGKKSGVAKGIGVGLTYGLLFC 121
+AGK AEE+I+Q+R VY++VGE+KA+E YS SL+ ALK GK+SG AKG GVG TY LLFC
Sbjct: 225 QAGKTAEEVIAQIRTVYSYVGESKALEKYSESLQNALKLGKRSGFAKGFGVGFTYSLLFC 284
Query: 122 AWALLLWYAGILVRHGDTNGGKAFTTIINVIFSGFALGQAAPNLAAIAKGKAAAANIISI 181
AWALLLWYA ILV H +TNGGKAFTTIINVIFSGFALGQA PNLAAIAKG+ AAANI S+
Sbjct: 285 AWALLLWYASILVLHHETNGGKAFTTIINVIFSGFALGQAMPNLAAIAKGRVAAANIFSM 344
Query: 182 IKENSHSSERPGDDGITLPKLAGQIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGP 241
I + SS R ++G+ L +AG+IEFSEV FAYPSRP ++F+ L+FS+ AG+T A VGP
Sbjct: 345 IDADYESSSR-SNNGVALSSVAGKIEFSEVSFAYPSRPQLIFDKLSFSISAGRTVAVVGP 403
Query: 242 SGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNI 301
SGSGKSTI+SMVQR YEP+SGKILLDGHDL++L+LKWLR QMGLVSQEPALF T+IA NI
Sbjct: 404 SGSGKSTIVSMVQRFYEPSSGKILLDGHDLRTLELKWLRRQMGLVSQEPALFNTTIAANI 463
Query: 302 LLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRN 361
L G+E+A+MD +I AA+ ANAHSF++ LPDGY TQVGE G QLSGGQKQRIAIARAVLRN
Sbjct: 464 LFGQENATMDEIIAAAEVANAHSFIQELPDGYSTQVGERGIQLSGGQKQRIAIARAVLRN 523
Query: 362 PKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRDVDTIMVLKNGQVVE 421
PKILLLDEATSALD+ESELIVQ+AL +IM NRTTI++AHRLST+++ DTI VLKNGQ+VE
Sbjct: 524 PKILLLDEATSALDSESELIVQQALVRIMLNRTTIIIAHRLSTIQEADTIFVLKNGQIVE 583
Query: 422 SGTHVDLISKGGEYAALVNLQSSEHLSNPSSICYSGSSRYSSFRDFPSSRRYDVEFESSK 481
SG H +L+SK GEYAAL +LQ +++ S I GSSR+SSF++ SS ++ +S +
Sbjct: 584 SGNHSELMSKNGEYAALESLQLPGQVNDSSIISPPGSSRHSSFQEAFSSHNSILDSKSFR 643
Query: 482 RRELQSSDQ-----SFAPSPSIWELLKLNAAEWPYAVLGSVGAILAGMEAPLFALGITHI 536
+LQS+++ +++P PSIWELLKLNA EWPYA+LGS+GAILAG++APLFALGITH+
Sbjct: 644 ETKLQSANKDLKTLNYSP-PSIWELLKLNAREWPYAILGSIGAILAGIQAPLFALGITHV 702
Query: 537 LTAFYSPHDSQIKRVVDQVALIFVGLAVVTIPVYLLQHYFYTLMGEHLTARVRLSMFSAI 596
L+AFYSPH SQIK V VA +FVG+A+ TIP+YLLQHYFYTLMGE LTARVRL +FSAI
Sbjct: 703 LSAFYSPHHSQIKEEVHHVAFMFVGVAIFTIPIYLLQHYFYTLMGERLTARVRLLLFSAI 762
Query: 597 LSNEIGWFDLDENNTGLLISTLAADATLVRSALADRLSIIVQNVALTVTAFVIAFILSWR 656
LSNE+GWFD DENNTG L S LA++ATLVRSALADR+S IVQNVALTV+AFVIAFI SWR
Sbjct: 763 LSNEVGWFDFDENNTGALTSILASNATLVRSALADRISTIVQNVALTVSAFVIAFIFSWR 822
Query: 657 LAAVVAASLPLLIGAFVAEQLFLKGFGGDYNRAYSRATSVAREAIANIRTVAAYGIEKRI 716
LAAVV ASLPLLIGA + EQLFLKGFGGDY +AY+RAT+VA EAIANIRTVAA+G E++I
Sbjct: 823 LAAVVVASLPLLIGASITEQLFLKGFGGDYGQAYNRATAVAHEAIANIRTVAAFGAEEKI 882
Query: 717 SIQFASELSQPNKQALLRGHISGFGYGVSQLLSLCSYALGLWYASVLIKQKGSNFGDIMK 776
S QFA EL++PNKQA LRGH++GFGYG+SQ + CSYALGLWYAS LIK + SNFGDIMK
Sbjct: 883 SSQFAFELNKPNKQAFLRGHVAGFGYGISQFFAFCSYALGLWYASTLIKHRHSNFGDIMK 942
Query: 777 SFMVLIITALAVAETLALAPDIVKGSQALGPVFGILYRKTAIQPDDPASKEVTEIKGNIE 836
SFMVLIIT+LA+AETLAL PDIVKGSQALG VF IL+RKT I ++P+++ VT I G+IE
Sbjct: 943 SFMVLIITSLAIAETLALTPDIVKGSQALGSVFNILHRKTIIDSNNPSAEMVTNIIGDIE 1002
Query: 837 LRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLI 896
NVSFKYP RPDIT+FE+LNL+VSAG+SLAVVGQSGSGKSTVI+LVMRFYDPISGT+LI
Sbjct: 1003 FNNVSFKYPARPDITVFEDLNLRVSAGKSLAVVGQSGSGKSTVIALVMRFYDPISGTILI 1062
Query: 897 DGYDIRTLNLRSLRRKIGLVQQEPALFSTTIYENIKYGNEDASEIELMKATKAANAHGFI 956
DG DI++LNLRSLR KIGLVQQEPALFSTTIYENIKYGN++ASEIE+MKA KAANAHGFI
Sbjct: 1063 DGRDIKSLNLRSLRMKIGLVQQEPALFSTTIYENIKYGNQEASEIEVMKAAKAANAHGFI 1122
Query: 957 SRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEAL 1016
SRMP YQ+HVGDRGVQLSGGQKQRVAIARAILK+PSILLLDEATSALD ASE +QEAL
Sbjct: 1123 SRMPNSYQTHVGDRGVQLSGGQKQRVAIARAILKDPSILLLDEATSALDAASERQVQEAL 1182
Query: 1017 DKLMEGRTTIMVAHRLSTIRNADKIAVLQQGKVAEIGSHEQLLRKENGIYKQLIRLQQDK 1076
D+LMEGRTTI+VAHRL+TIR+A++IAVL+ G+V EIGSH+ LL+ + IYKQL+ LQ +
Sbjct: 1183 DRLMEGRTTILVAHRLTTIRDANRIAVLKSGRVVEIGSHDSLLKNPHSIYKQLVNLQHET 1242
Query: 1077 NPEAME 1082
+++E
Sbjct: 1243 TVQSLE 1248
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297851228|ref|XP_002893495.1| P-glycoprotein 13 [Arabidopsis lyrata subsp. lyrata] gi|297339337|gb|EFH69754.1| P-glycoprotein 13 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 1587 bits (4108), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 773/1077 (71%), Positives = 910/1077 (84%), Gaps = 5/1077 (0%)
Query: 2 QTGHALRYLSQFFVGFAVGFTSVWQLTLLTLAVVPLIAVAGGAYTITMSTLSEKGEAAYG 61
+T H LRYLSQF GF +GF SVWQLTLLTLAVVPLIAVAGG Y I MST+SEK E AY
Sbjct: 169 KTDHVLRYLSQFIAGFVIGFLSVWQLTLLTLAVVPLIAVAGGGYAIIMSTISEKSETAYA 228
Query: 62 EAGKVAEEIISQVRAVYAFVGEAKAIESYSHSLKEALKQGKKSGVAKGIGVGLTYGLLFC 121
+AGKVAEE++SQVR VYAFVGE KA++SYS+SLK+ALK GK+SG+AKG+GVGLTY LLFC
Sbjct: 229 DAGKVAEEVMSQVRTVYAFVGEEKAVKSYSNSLKKALKLGKRSGLAKGLGVGLTYSLLFC 288
Query: 122 AWALLLWYAGILVRHGDTNGGKAFTTIINVIFSGFALGQAAPNLAAIAKGKAAAANIISI 181
+WALLLWYA +LVRHG TNG KAFTTI+NVIFSGFALGQAAP+L+AIAKG+ AAANI +
Sbjct: 289 SWALLLWYASLLVRHGKTNGAKAFTTILNVIFSGFALGQAAPSLSAIAKGRVAAANIFRM 348
Query: 182 IKENSHSSERPGDDGITLPKLAGQIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGP 241
I N+ S ++G TL +AG+IEF +V FAYPSRP+MVFENL+F++ +GKTFAFVGP
Sbjct: 349 IGNNNLESSERLENGTTLQNVAGRIEFHQVSFAYPSRPNMVFENLSFTIRSGKTFAFVGP 408
Query: 242 SGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNI 301
SGSGKSTIISMVQR YEP SGKILLDG+D+KSL+LKWLRE +GLVSQEPALFAT+IA+NI
Sbjct: 409 SGSGKSTIISMVQRFYEPNSGKILLDGNDIKSLKLKWLREHLGLVSQEPALFATTIASNI 468
Query: 302 LLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRN 361
+ GKE+A+MD++IEAAKAANA SF++ LP+GY TQVGEGGTQLSGGQKQRIAIARAVLRN
Sbjct: 469 IFGKENANMDQIIEAAKAANADSFIKSLPNGYNTQVGEGGTQLSGGQKQRIAIARAVLRN 528
Query: 362 PKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRDVDTIMVLKNGQVVE 421
PKILLLDEATSALDAESE IVQ+AL+ I NRTTIVVAHRLST+R+VD I+VL+NGQV E
Sbjct: 529 PKILLLDEATSALDAESEKIVQQALDNITENRTTIVVAHRLSTIRNVDKIVVLRNGQVTE 588
Query: 422 SGTHVDLISKGGEYAALVNLQSSEHLSNPSSI----CYSGSSRYSSFRDFPSSRRYDVEF 477
+G+H +L+S+GG+YA LVN Q +E N SI C S + SS R S R
Sbjct: 589 TGSHSELMSRGGDYATLVNCQETEPQENSRSIMSETCKSQAGSSSSRRISSSRRTSSFR- 647
Query: 478 ESSKRRELQSSDQSFAPSPSIWELLKLNAAEWPYAVLGSVGAILAGMEAPLFALGITHIL 537
E + E S+D+ F+ S IWEL+KLN+ EWPYA+LGS+GA+LAG + PLF++GI ++L
Sbjct: 648 EDQVKTENDSNDKDFSSSSMIWELIKLNSPEWPYALLGSIGAVLAGAQTPLFSMGIAYVL 707
Query: 538 TAFYSPHDSQIKRVVDQVALIFVGLAVVTIPVYLLQHYFYTLMGEHLTARVRLSMFSAIL 597
TAFYSP + I R V++VA+IFVG+ +VT P+YLLQHYFYTLMGE LT+RVRLS+FSAIL
Sbjct: 708 TAFYSPFPNAIMRDVEKVAIIFVGVGIVTAPIYLLQHYFYTLMGERLTSRVRLSLFSAIL 767
Query: 598 SNEIGWFDLDENNTGLLISTLAADATLVRSALADRLSIIVQNVALTVTAFVIAFILSWRL 657
SNEIGWFDLDENNTG L S LAADATLVRSALADRLS IVQN++LTVTA +AF SWR+
Sbjct: 768 SNEIGWFDLDENNTGSLTSILAADATLVRSALADRLSTIVQNLSLTVTALALAFYYSWRV 827
Query: 658 AAVVAASLPLLIGAFVAEQLFLKGFGGDYNRAYSRATSVAREAIANIRTVAAYGIEKRIS 717
AAVV A PLLI A + EQLFLKGFGGDY RAYSRATSVAREAIANIRTVAA+G EK+I+
Sbjct: 828 AAVVTACFPLLIAASLTEQLFLKGFGGDYTRAYSRATSVAREAIANIRTVAAFGAEKQIA 887
Query: 718 IQFASELSQPNKQALLRGHISGFGYGVSQLLSLCSYALGLWYASVLIKQKGSNFGDIMKS 777
QF ELS+P K A +RGHISGFGYG+SQ L+ CSYALGLWY SV IK K +NFGD +KS
Sbjct: 888 EQFTCELSKPTKNAFVRGHISGFGYGLSQFLAFCSYALGLWYVSVSIKNKETNFGDSIKS 947
Query: 778 FMVLIITALAVAETLALAPDIVKGSQALGPVFGILYRKTAIQPDDPASKEVTEIKGNIEL 837
FMVLI+TA +V+ETLAL PDIVKG+QALG VF +L+R+T I PD P S+ V++IKG+IE
Sbjct: 948 FMVLIVTAFSVSETLALTPDIVKGTQALGSVFRVLHRETEIPPDQPNSRMVSQIKGDIEF 1007
Query: 838 RNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLID 897
RNVSF YP RPDI IF+NLNL+VSAG+SLAVVG SGSGKSTVI L+MRFYDP G + ID
Sbjct: 1008 RNVSFVYPTRPDINIFQNLNLRVSAGKSLAVVGPSGSGKSTVIGLIMRFYDPSHGNLCID 1067
Query: 898 GYDIRTLNLRSLRRKIGLVQQEPALFSTTIYENIKYGNEDASEIELMKATKAANAHGFIS 957
G DI+TLNLRSLR+K+ LVQQEPALFSTTI+ENIKYGNE+ASE E+++A KAANAH FIS
Sbjct: 1068 GQDIKTLNLRSLRKKLALVQQEPALFSTTIHENIKYGNENASESEIIEAAKAANAHEFIS 1127
Query: 958 RMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEALD 1017
RM EGY+++VGD+GVQLSGGQKQRVAIARA+LK+PS+LLLDEATSALDT+SE L+QEALD
Sbjct: 1128 RMEEGYKTYVGDKGVQLSGGQKQRVAIARAVLKDPSVLLLDEATSALDTSSEKLVQEALD 1187
Query: 1018 KLMEGRTTIMVAHRLSTIRNADKIAVLQQGKVAEIGSHEQLLRKENGIYKQLIRLQQ 1074
KLM+GRTT++VAHRLSTIR AD IAVL +G+V E GSH +L+ NG YKQL LQ+
Sbjct: 1188 KLMKGRTTVLVAHRLSTIRKADTIAVLHKGRVVEKGSHRELVSIPNGFYKQLTNLQE 1244
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 1082 | ||||||
| TAIR|locus:2010464 | 1245 | ABCB13 "ATP-binding cassette B | 0.988 | 0.859 | 0.678 | 0.0 | |
| TAIR|locus:2010444 | 1247 | ABCB14 "ATP-binding cassette B | 0.990 | 0.859 | 0.672 | 0.0 | |
| TAIR|locus:2090734 | 1252 | ABCB19 "ATP-binding cassette B | 0.988 | 0.854 | 0.495 | 5e-282 | |
| UNIPROTKB|Q0JCP1 | 1259 | Os04g0459000 "Os04g0459000 pro | 0.541 | 0.465 | 0.475 | 9e-279 | |
| TAIR|locus:2057961 | 1286 | ABCB1 "ATP-binding cassette B1 | 0.560 | 0.472 | 0.473 | 2.2e-275 | |
| UNIPROTKB|Q8GU75 | 1264 | mdr11 "MDR-like ABC transporte | 0.991 | 0.848 | 0.484 | 1e-274 | |
| TAIR|locus:2120805 | 1273 | ABCB2 "ATP-binding cassette B2 | 0.989 | 0.841 | 0.481 | 1e-272 | |
| TAIR|locus:2019958 | 1227 | PGP10 "P-glycoprotein 10" [Ara | 0.975 | 0.860 | 0.475 | 2e-269 | |
| UNIPROTKB|Q7EZL2 | 1344 | P0705A05.112-2 "Putative P-gly | 0.659 | 0.531 | 0.421 | 2e-263 | |
| TAIR|locus:2088897 | 1240 | ABCB15 "ATP-binding cassette B | 0.974 | 0.85 | 0.443 | 1.2e-237 |
| TAIR|locus:2010464 ABCB13 "ATP-binding cassette B13" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 3707 (1310.0 bits), Expect = 0., P = 0.
Identities = 732/1079 (67%), Positives = 863/1079 (79%)
Query: 2 QTGHALRYLSQFFVGFAVGFTSVWQLTLLTLAVVPLIAVAGGAYTITMSTLSEKGEAAYG 61
+T H LRYLSQF GF +GF SVWQLTLLTL VVPLIA+AGG Y I MST+SEK E AY
Sbjct: 168 KTDHVLRYLSQFIAGFVIGFLSVWQLTLLTLGVVPLIAIAGGGYAIVMSTISEKSETAYA 227
Query: 62 EAGKVAEEIISQVRAVYAFVGEAKAIESYSHSLKEALKQGKKSGVAKGIGVGLTYGLLFC 121
+AGKVAEE++SQVR VYAFVGE KA++SYS+SLK+ALK GK+SG+AKG+GVGLTY LLFC
Sbjct: 228 DAGKVAEEVMSQVRTVYAFVGEEKAVKSYSNSLKKALKLGKRSGLAKGLGVGLTYSLLFC 287
Query: 122 AWALLLWYAGILVRHGDTNGGKAFTTIINVIFSGFALGQXXXXXXXXXXXXXXXXXXXXX 181
AWALLLWYA +LVRHG TNG KAFTTI+NVIFSGFALGQ
Sbjct: 288 AWALLLWYASLLVRHGKTNGAKAFTTILNVIFSGFALGQAAPSLSAIAKGRVAAANIFRM 347
Query: 182 XXXXSHSSERPGDDGITLPKLAGQIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGP 241
+ S + D+G TL +AG+IEF +V FAYPSRP+MVFENL+F++ +GKTFAFVGP
Sbjct: 348 IGNNNSESSQRLDEGTTLQNVAGRIEFQKVSFAYPSRPNMVFENLSFTIRSGKTFAFVGP 407
Query: 242 SGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNI 301
SGSGKSTIISMVQR YEP SG+ILLDG+D+KSL+LKW REQ+GLVSQEPALFAT+IA+NI
Sbjct: 408 SGSGKSTIISMVQRFYEPNSGEILLDGNDIKSLKLKWFREQLGLVSQEPALFATTIASNI 467
Query: 302 LLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRN 361
LLGKE+A+MD++IEAAKAANA SF++ LP+GY TQVGEGGTQLSGGQKQRIAIARAVLRN
Sbjct: 468 LLGKENANMDQIIEAAKAANADSFIKSLPNGYNTQVGEGGTQLSGGQKQRIAIARAVLRN 527
Query: 362 PKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRDVDTIMVLKNGQVVE 421
PKILLLDEATSALDAESE IVQ+AL+ +M RTTIVVAHRLST+R+VD I+VL++GQV E
Sbjct: 528 PKILLLDEATSALDAESEKIVQQALDNVMEKRTTIVVAHRLSTIRNVDKIVVLRDGQVRE 587
Query: 422 SGTHVDLISKGGEYAALVNLQSSEHLSNPXXXXXXX---XXXXXXFRDFPSSRR---YDV 475
+G+H +L+ +GG+YA LVN Q +E N R SSRR + V
Sbjct: 588 TGSHSELMLRGGDYATLVNCQETEPQENSRSIMSETCKSQAGSSSSRRVSSSRRTSSFRV 647
Query: 476 EFESSKRRELQSSDQSFAPSPSIWELLKLNAAEWPYAVLGSVGAILAGMEAPLFALGITH 535
+ E +K + S + F+ S IWEL+KLN+ EWPYA+LGS+GA+LAG + PLF++GI +
Sbjct: 648 DQEKTKNDD---SKKDFSSSSMIWELIKLNSPEWPYALLGSIGAVLAGAQTPLFSMGIAY 704
Query: 536 ILTAFYSPHDSQIKRVVDQVALIFVGLAVVTIPVYLLQHYFYTLMGEHLTARVRLSMFSA 595
+LTAFYSP + IKR V++VA+IF G +VT P+YLLQHYFYTLMGE LT+RVRLS+FSA
Sbjct: 705 VLTAFYSPFPNVIKRDVEKVAIIFAGAGIVTAPIYLLQHYFYTLMGERLTSRVRLSLFSA 764
Query: 596 ILSNEIGWFDLDENNTGLLISTLAADATLVRSALADRLSIIVQNVALTVTAFVIAFILSW 655
ILSNEIGWFDLDENNTG L S LAADATLVRSALADRLS IVQN++LTVTA +AF SW
Sbjct: 765 ILSNEIGWFDLDENNTGSLTSILAADATLVRSALADRLSTIVQNLSLTVTALALAFFYSW 824
Query: 656 RXXXXXXXXXXXXIGAFVAEQLFLKGFGGDYNRAYSRATSVAREAIANIRTVAAYGIEKR 715
R I A + EQLFLKGFGGDY RAYSRATSVAREAIANIRTVAAYG EK+
Sbjct: 825 RVAAVVTACFPLLIAASLTEQLFLKGFGGDYTRAYSRATSVAREAIANIRTVAAYGAEKQ 884
Query: 716 ISIQFASELSQPNKQALLRGHISGFGYGVSQLLSLCSYALGLWYASVLIKQKGSNFGDIM 775
IS QF ELS+P K A +RGHISGFGYG+SQ L+ CSYALGLWY SVLI K +NFGD +
Sbjct: 885 ISEQFTCELSKPTKNAFVRGHISGFGYGLSQFLAFCSYALGLWYVSVLINHKETNFGDSI 944
Query: 776 KSFMVXXXXXXXXXXXXXXXPDIVKGSQALGPVFGILYRKTAIQPDDPASKEVTEIKGNI 835
KSFMV PDIVKG+QALG VF +L+R+T I PD P S+ V+++KG+I
Sbjct: 945 KSFMVLIVTAFSVSETLALTPDIVKGTQALGSVFRVLHRETKISPDQPNSRMVSQVKGDI 1004
Query: 836 ELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVL 895
E RNVSF YP RP+I IF+NLNL+VSAG+SLAVVG SGSGKSTVI L+MRFYDP +G +
Sbjct: 1005 EFRNVSFVYPTRPEIDIFKNLNLRVSAGKSLAVVGPSGSGKSTVIGLIMRFYDPSNGNLC 1064
Query: 896 IDGYDIRTLNLRSLRRKIGLVQQEPALFSTTIYENIKYGNEDASEIELMKATKAANAHGF 955
IDG DI+TLNLRSLR+K+ LVQQEPALFSTTIYENIKYGNE+ASE E+M+A KAANAH F
Sbjct: 1065 IDGQDIKTLNLRSLRKKLALVQQEPALFSTTIYENIKYGNENASEAEIMEAAKAANAHEF 1124
Query: 956 ISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEA 1015
I +M EGY++H GD+GVQLSGGQKQRVAIARA+LK+PS+LLLDEATSALDT+SE L+QEA
Sbjct: 1125 IIKMEEGYKTHAGDKGVQLSGGQKQRVAIARAVLKDPSVLLLDEATSALDTSSEKLVQEA 1184
Query: 1016 LDKLMEGRTTIMVAHRLSTIRNADKIAVLQQGKVAEIGSHEQLLRKENGIYKQLIRLQQ 1074
LDKLM+GRTT++VAHRLSTIR AD +AVL +G+V E GSH +L+ NG YKQL LQ+
Sbjct: 1185 LDKLMKGRTTVLVAHRLSTIRKADTVAVLHKGRVVEKGSHRELVSIPNGFYKQLTSLQE 1243
|
|
| TAIR|locus:2010444 ABCB14 "ATP-binding cassette B14" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 3648 (1289.2 bits), Expect = 0., P = 0.
Identities = 725/1078 (67%), Positives = 859/1078 (79%)
Query: 2 QTGHALRYLSQFFVGFAVGFTSVWQLTLLTLAVVPLIAVAGGAYTITMSTLSEKGEAAYG 61
+TGH LRYL QF GF +GF SVWQLTLLTL VVPLIA+AGG Y I MST+SEK EAAY
Sbjct: 169 KTGHVLRYLCQFIAGFVIGFLSVWQLTLLTLGVVPLIAIAGGGYAIVMSTISEKSEAAYA 228
Query: 62 EAGKVAEEIISQVRAVYAFVGEAKAIESYSHSLKEALKQGKKSGVAKGIGVGLTYGLLFC 121
+AGKVAEE++SQVR VYAFVGE KA++SYS+SLK+ALK K+SG+AKG+GVGLTY LLFC
Sbjct: 229 DAGKVAEEVMSQVRTVYAFVGEEKAVKSYSNSLKKALKLSKRSGLAKGLGVGLTYSLLFC 288
Query: 122 AWALLLWYAGILVRHGDTNGGKAFTTIINVIFSGFALGQXXXXXXXXXXXXXXXXXXXXX 181
AWALL WYA +LVRHG TNG KAFTTI+NVI+SGFALGQ
Sbjct: 289 AWALLFWYASLLVRHGKTNGAKAFTTILNVIYSGFALGQAVPSLSAISKGRVAAANIFKM 348
Query: 182 XXXXS-HSSERPGDDGITLPKLAGQIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVG 240
+ SSER ++G TL + G+IEF V FAYPSRP+MVFENL+F++ +GKTFAFVG
Sbjct: 349 IGNNNLESSERL-ENGTTLQNVVGKIEFCGVSFAYPSRPNMVFENLSFTIHSGKTFAFVG 407
Query: 241 PSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGLVSQEPALFATSIANN 300
PSGSGKSTIISMVQR YEP SG+ILLDG+D+K+L+LKWLREQMGLVSQEPALFAT+IA+N
Sbjct: 408 PSGSGKSTIISMVQRFYEPRSGEILLDGNDIKNLKLKWLREQMGLVSQEPALFATTIASN 467
Query: 301 ILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLR 360
ILLGKE A+MD++IEAAKAANA SF++ LP+GY TQVGEGGTQLSGGQKQRIAIARAVLR
Sbjct: 468 ILLGKEKANMDQIIEAAKAANADSFIKSLPNGYNTQVGEGGTQLSGGQKQRIAIARAVLR 527
Query: 361 NPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRDVDTIMVLKNGQVV 420
NPKILLLDEATSALDAESE IVQ+AL+ +M RTTIV+AHRLST+R+VD I+VL++GQV
Sbjct: 528 NPKILLLDEATSALDAESEKIVQQALDNVMEKRTTIVIAHRLSTIRNVDKIVVLRDGQVR 587
Query: 421 ESGTHVDLISKGGEYAALVNLQSSE---HLSNPXXXXXXXXXXXXXFRDFPSSRRYDVEF 477
E+G+H +LIS+GG+YA LVN Q +E +L + R SSRR
Sbjct: 588 ETGSHSELISRGGDYATLVNCQDTEPQENLRSVMYESCRSQAGSYSSRRVFSSRRTSSFR 647
Query: 478 ESSKRRELQSSDQSFAPSPS-IWELLKLNAAEWPYAVLGSVGAILAGMEAPLFALGITHI 536
E ++ E S + S S IWEL+KLNA EW YA+LGS+GA+LAG + LF++G+ ++
Sbjct: 648 EDQEKTEKDSKGEDLISSSSMIWELIKLNAPEWLYALLGSIGAVLAGSQPALFSMGLAYV 707
Query: 537 LTAFYSPHDSQIKRVVDQVALIFVGLAVVTIPVYLLQHYFYTLMGEHLTARVRLSMFSAI 596
LT FYSP S IKR VD+VA+IFVG +VT P+Y+LQHYFYTLMGE LT+RVRLS+FSAI
Sbjct: 708 LTTFYSPFPSLIKREVDKVAIIFVGAGIVTAPIYILQHYFYTLMGERLTSRVRLSLFSAI 767
Query: 597 LSNEIGWFDLDENNTGLLISTLAADATLVRSALADRLSIIVQNVALTVTAFVIAFILSWR 656
LSNEIGWFDLDENNTG L S LAADATLVRSA+ADRLS IVQN++LT+TA +AF SWR
Sbjct: 768 LSNEIGWFDLDENNTGSLTSILAADATLVRSAIADRLSTIVQNLSLTITALALAFFYSWR 827
Query: 657 XXXXXXXXXXXXIGAFVAEQLFLKGFGGDYNRAYSRATSVAREAIANIRTVAAYGIEKRI 716
I A + EQLFLKGFGGDY RAYSRATS+AREAI+NIRTVAA+ EK+I
Sbjct: 828 VAAVVTACFPLLIAASLTEQLFLKGFGGDYTRAYSRATSLAREAISNIRTVAAFSAEKQI 887
Query: 717 SIQFASELSQPNKQALLRGHISGFGYGVSQLLSLCSYALGLWYASVLIKQKGSNFGDIMK 776
S QF ELS+P K ALLRGHISGFGYG+SQ L+ CSYALGLWY SVLIK+ +NF D +K
Sbjct: 888 SEQFTCELSKPTKSALLRGHISGFGYGLSQCLAFCSYALGLWYISVLIKRNETNFEDSIK 947
Query: 777 SFMVXXXXXXXXXXXXXXXPDIVKGSQALGPVFGILYRKTAIQPDDPASKEVTEIKGNIE 836
SFMV PDIVKG+QALG VF +L+R+T I PD P S+ VT IKG+IE
Sbjct: 948 SFMVLLVTAYSVAETLALTPDIVKGTQALGSVFRVLHRETEIPPDQPNSRLVTHIKGDIE 1007
Query: 837 LRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLI 896
RNVSF YP RP+I IF+NLNL+VSAG+SLAVVG SGSGKSTVI L+MRFYDP +G + I
Sbjct: 1008 FRNVSFAYPTRPEIAIFKNLNLRVSAGKSLAVVGPSGSGKSTVIGLIMRFYDPSNGNLCI 1067
Query: 897 DGYDIRTLNLRSLRRKIGLVQQEPALFSTTIYENIKYGNEDASEIELMKATKAANAHGFI 956
DG+DI+++NLRSLR+K+ LVQQEPALFST+I+ENIKYGNE+ASE E+++A KAANAH FI
Sbjct: 1068 DGHDIKSVNLRSLRKKLALVQQEPALFSTSIHENIKYGNENASEAEIIEAAKAANAHEFI 1127
Query: 957 SRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEAL 1016
SRM EGY +HVGD+GVQLSGGQKQRVAIARA+LK+PS+LLLDEATSALDT++E +QEAL
Sbjct: 1128 SRMEEGYMTHVGDKGVQLSGGQKQRVAIARAVLKDPSVLLLDEATSALDTSAEKQVQEAL 1187
Query: 1017 DKLMEGRTTIMVAHRLSTIRNADKIAVLQQGKVAEIGSHEQLLRKENGIYKQLIRLQQ 1074
DKLM+GRTTI+VAHRLSTIR AD I VL +GKV E GSH +L+ K +G YK+L LQ+
Sbjct: 1188 DKLMKGRTTILVAHRLSTIRKADTIVVLHKGKVVEKGSHRELVSKSDGFYKKLTSLQE 1245
|
|
| TAIR|locus:2090734 ABCB19 "ATP-binding cassette B19" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2710 (959.0 bits), Expect = 5.0e-282, P = 5.0e-282
Identities = 540/1089 (49%), Positives = 746/1089 (68%)
Query: 2 QTGHALRYLSQFFVGFAVGFTSVWQLTLLTLAVVPLIAVAGGAYTITMSTLSEKGEAAYG 61
+ G+ + YLS F G VGF S W+L LL++AV+P IA AGG Y T++ ++ K +Y
Sbjct: 162 KVGNFIHYLSTFLAGLVVGFVSAWKLALLSVAVIPGIAFAGGLYAYTLTGITSKSRESYA 221
Query: 62 EAGKVAEEIISQVRAVYAFVGEAKAIESYSHSLKEALKQGKKSGVAKGIGVGLTYGLLFC 121
AG +AE+ I+QVR VY++VGE+KA+ +YS +++ LK G K+G+AKG+G+G TYG+
Sbjct: 222 NAGVIAEQAIAQVRTVYSYVGESKALNAYSDAIQYTLKLGYKAGMAKGLGLGCTYGIACM 281
Query: 122 AWALLLWYAGILVRHGDTNGGKAFTTIINVIFSGFALGQXXXXXXXXXXXXXXXXXXXXX 181
+WAL+ WYAG+ +R+G T+GGKAFT I + I G +LGQ
Sbjct: 282 SWALVFWYAGVFIRNGQTDGGKAFTAIFSAIVGGMSLGQSFSNLGAFSKGKAAGYKLMEI 341
Query: 182 XXXXSHSSERPGDDGITLPKLAGQIEFSEVCFAYPSRPH-MVFENLNFSVDAGKTFAFVG 240
+ P D G L ++ G IEF +V F+YPSRP M+F N N +GKT A VG
Sbjct: 342 INQRPTIIQDPLD-GKCLDQVHGNIEFKDVTFSYPSRPDVMIFRNFNIFFPSGKTVAVVG 400
Query: 241 PSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGLVSQEPALFATSIANN 300
SGSGKST++S+++R Y+P SG+ILLDG ++K+LQLK+LREQ+GLV+QEPALFAT+I N
Sbjct: 401 GSGSGKSTVVSLIERFYDPNSGQILLDGVEIKTLQLKFLREQIGLVNQEPALFATTILEN 460
Query: 301 ILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLR 360
IL GK DA+M V AA AANAHSF+ LP GY TQVGE G QLSGGQKQRIAIARA+L+
Sbjct: 461 ILYGKPDATMVEVEAAASAANAHSFITLLPKGYDTQVGERGVQLSGGQKQRIAIARAMLK 520
Query: 361 NPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRDVDTIMVLKNGQVV 420
+PKILLLDEATSALDA SE IVQ AL+++M RTT+VVAHRL T+R+VD+I V++ GQVV
Sbjct: 521 DPKILLLDEATSALDASSESIVQEALDRVMVGRTTVVVAHRLCTIRNVDSIAVIQQGQVV 580
Query: 421 ESGTHVDLISKGGEYAALVNLQS---SEHLSNPXXXXXXXXXXXXXFRDFPSSRR----- 472
E+GTH +LI+K G YA+L+ Q + SNP S R
Sbjct: 581 ETGTHEELIAKSGAYASLIRFQEMVGTRDFSNPSTRRTRSTRLSHSLSTKSLSLRSGSLR 640
Query: 473 ---YDVEFESSKRRELQSSDQSF----APSPSIWELLKLNAAEWPYAVLGSVGAILAGME 525
Y + R E+ S+ ++ AP + LLKLN+ EWPY+++G+VG+IL+G
Sbjct: 641 NLSYSYSTGADGRIEMISNAETDRKTRAPENYFYRLLKLNSPEWPYSIMGAVGSILSGFI 700
Query: 526 APLFALGITHILTAFY-SPHDSQIKRVVDQVALIFVGLAVVTIPVYLLQHYFYTLMGEHL 584
P FA+ +++++ FY + +DS ++R + I++G + + YL+QHYF+++MGE+L
Sbjct: 701 GPTFAIVMSNMIEVFYYTDYDS-MERKTKEYVFIYIGAGLYAVGAYLIQHYFFSIMGENL 759
Query: 585 TARVRLSMFSAILSNEIGWFDLDENNTGLLISTLAADATLVRSALADRLSIIVQNVALTV 644
T RVR M SAIL NE+GWFD DE+N+ L+ + LA DA V+SA+A+R+S+I+QN+ +
Sbjct: 760 TTRVRRMMLSAILRNEVGWFDEDEHNSSLIAARLATDAADVKSAIAERISVILQNMTSLL 819
Query: 645 TAFVIAFILSWRXXXXXXXXXXXXIGAFVAEQLFLKGFGGDYNRAYSRATSVAREAIANI 704
T+F++AFI+ WR + A A+QL LKGF GD +A+++ + +A E ++NI
Sbjct: 820 TSFIVAFIVEWRVSLLILGTFPLLVLANFAQQLSLKGFAGDTAKAHAKTSMIAGEGVSNI 879
Query: 705 RTVAAYGIEKRISIQFASELSQPNKQALLRGHISGFGYGVSQLLSLCSYALGLWYASVLI 764
RTVAA+ + +I F EL P K++L R SGF +G+SQL S AL LWY + L+
Sbjct: 880 RTVAAFNAQSKILSLFCHELRVPQKRSLYRSQTSGFLFGLSQLALYGSEALILWYGAHLV 939
Query: 765 KQKGSNFGDIMKSFMVXXXXXXXXXXXXXXXPDIVKGSQALGPVFGILYRKTAIQPDDPA 824
+ S F ++K F+V P+I++G +A+G VF +L R+T I PDD
Sbjct: 940 SKGVSTFSKVIKVFVVLVITANSVAETVSLAPEIIRGGEAVGSVFSVLDRQTRIDPDDAD 999
Query: 825 SKEVTEIKGNIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVM 884
+ V I+G+IE R+V F YP RPD+ +F + NL++ AG S A+VG SGSGKS+VI+++
Sbjct: 1000 ADPVETIRGDIEFRHVDFAYPSRPDVMVFRDFNLRIRAGHSQALVGASGSGKSSVIAMIE 1059
Query: 885 RFYDPISGTVLIDGYDIRTLNLRSLRRKIGLVQQEPALFSTTIYENIKYGNEDASEIELM 944
RFYDP++G V+IDG DIR LNL+SLR KIGLVQQEPALF+ TI++NI YG + A+E E++
Sbjct: 1060 RFYDPLAGKVMIDGKDIRRLNLKSLRLKIGLVQQEPALFAATIFDNIAYGKDGATESEVI 1119
Query: 945 KATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSAL 1004
A +AANAHGFIS +PEGY++ VG+RGVQLSGGQKQR+AIARA+LKNP++LLLDEATSAL
Sbjct: 1120 DAARAANAHGFISGLPEGYKTPVGERGVQLSGGQKQRIAIARAVLKNPTVLLLDEATSAL 1179
Query: 1005 DTASENLIQEALDKLMEGRTTIMVAHRLSTIRNADKIAVLQQGKVAEIGSHEQLLRKENG 1064
D SE ++QEAL++LM GRTT++VAHRLSTIR D I V+Q G++ E GSH +L+ + G
Sbjct: 1180 DAESECVLQEALERLMRGRTTVVVAHRLSTIRGVDCIGVIQDGRIVEQGSHSELVSRPEG 1239
Query: 1065 IYKQLIRLQ 1073
Y +L++LQ
Sbjct: 1240 AYSRLLQLQ 1248
|
|
| UNIPROTKB|Q0JCP1 Os04g0459000 "Os04g0459000 protein" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
Score = 1486 (528.2 bits), Expect = 9.0e-279, Sum P(2) = 9.0e-279
Identities = 279/587 (47%), Positives = 416/587 (70%)
Query: 488 SDQSF-APSPSIWELLKLNAAEWPYAVLGSVGAILAGMEAPLFALGITHILTAFYSPHDS 546
+D+ + AP ++LLKLNA EWPY +LG++G+IL+G P FA+ +++++ FY +
Sbjct: 669 NDRKYPAPKGYFFKLLKLNAPEWPYTILGAIGSILSGFIGPTFAIVMSNMIEVFYFRDPN 728
Query: 547 QIKRVVDQVALIFVGLAVVTIPVYLLQHYFYTLMGEHLTARVRLSMFSAILSNEIGWFDL 606
++R + I++G + + YL+QHYF+++MGE+LT RVR M +AIL N++GWFD
Sbjct: 729 AMERKTREYVFIYIGTGLYAVVAYLVQHYFFSIMGENLTTRVRRMMLAAILRNDVGWFDQ 788
Query: 607 DENNTGLLISTLAADATLVRSALADRLSIIVQNVALTVTAFVIAFILSWRXXXXXXXXXX 666
+ENN+ L+ + L+ DA V+SA+A+R+S+I+QN+ + +FV+ FI+ WR
Sbjct: 789 EENNSSLVAARLSTDAADVKSAIAERISVILQNMTSLLVSFVVGFIIEWRVAVLILVTFP 848
Query: 667 XXIGAFVAEQLFLKGFGGDYNRAYSRATSVAREAIANIRTVAAYGIEKRISIQFASELSQ 726
+ A A+QL +KGF GD +A+++ + +A E ++NIRTVAA+ + ++ F +EL
Sbjct: 849 LLVLANFAQQLSMKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQDKVLSLFCTELRV 908
Query: 727 PNKQALLRGHISGFGYGVSQLLSLCSYALGLWYASVLIKQKGSNFGDIMKSFMVXXXXXX 786
P +L R ISG +G+SQL S AL LWY + L++ S F ++K F+V
Sbjct: 909 PQMHSLRRSQISGALFGLSQLSLYASEALILWYGAHLVRHHVSTFSKVIKVFVVLVITAN 968
Query: 787 XXXXXXXXXPDIVKGSQALGPVFGILYRKTAIQPDDPASKEVTEIKGNIELRNVSFKYPV 846
P+IV+G +++ VF IL +T I PD+P ++ V ++G+I+ R+V F YP
Sbjct: 969 TVAETVSLAPEIVRGGESIRSVFAILNYRTRIDPDEPETEPVESVRGDIDFRHVDFAYPS 1028
Query: 847 RPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNL 906
RPD+ +F++ +L++ AG+S A+VG SGSGKSTVI+L+ RFYDP++G V+IDG DIR LN+
Sbjct: 1029 RPDVMVFKDFSLRIRAGQSQALVGASGSGKSTVIALIERFYDPLAGKVMIDGKDIRRLNV 1088
Query: 907 RSLRRKIGLVQQEPALFSTTIYENIKYGNEDASEIELMKATKAANAHGFISRMPEGYQSH 966
RSLR KIGLVQQEP LF+T+I+ENI YG + A+E E+++A K AN HGF+S +PEGY++
Sbjct: 1089 RSLRLKIGLVQQEPVLFATSIFENIAYGKDGATEEEVIEAAKVANMHGFVSALPEGYKTP 1148
Query: 967 VGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLMEGRTTI 1026
VG+RGVQLSGGQKQR+AIARA+LK+P++LLLDEATSALD SE ++QEAL+++M+GRT +
Sbjct: 1149 VGERGVQLSGGQKQRIAIARAVLKDPAVLLLDEATSALDAESECVLQEALERIMKGRTAV 1208
Query: 1027 MVAHRLSTIRNADKIAVLQQGKVAEIGSHEQLLRKENGIYKQLIRLQ 1073
+VAHRLSTIR D IAV+Q G+V E GSH +L+ + +G Y +L++LQ
Sbjct: 1209 LVAHRLSTIRGVDSIAVVQDGRVVEQGSHGELVSRPDGAYSRLLQLQ 1255
|
|
| TAIR|locus:2057961 ABCB1 "ATP-binding cassette B1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1457 (517.9 bits), Expect = 2.2e-275, Sum P(2) = 2.2e-275
Identities = 290/613 (47%), Positives = 410/613 (66%)
Query: 466 DFPSSRRYDVEFESSKRRELQSSDQSFAPSP-SIWELLKLNAAEWPYAVLGSVGAILAGM 524
DF +S + + ++S ++ +F S W L K+N+ EW YA+LGSVG+++ G
Sbjct: 654 DFSTSD-FSLSIDASSYPNYRNEKLAFKDQANSFWRLAKMNSPEWKYALLGSVGSVICGS 712
Query: 525 EAPLFALGITHILTAFYSP-HDSQIKRVVDQVALIFVGLAVVTIPVYLLQHYFYTLMGEH 583
+ FA ++ +L+ +Y+P H+ IK++ D+ + +GL+ + LQH F+ ++GE+
Sbjct: 713 LSAFFAYVLSAVLSVYYNPDHEYMIKQI-DKYCYLLIGLSSAALVFNTLQHSFWDIVGEN 771
Query: 584 LTARVRLSMFSAILSNEIGWFDLDENNTGLLISTLAADATLVRSALADRLSIIVQNVALT 643
LT RVR M SA+L NE+ WFD +EN + + + LA DA VRSA+ DR+S+IVQN AL
Sbjct: 772 LTKRVREKMLSAVLKNEMAWFDQEENESARIAARLALDANNVRSAIGDRISVIVQNTALM 831
Query: 644 VTAFVIAFILSWRXXXXXXXXXXXXIGAFVAEQLFLKGFGGDYNRAYSRATSVAREAIAN 703
+ A F+L WR + A V +++F+ GF GD A+++ T +A EAIAN
Sbjct: 832 LVACTAGFVLQWRLALVLVAVFPVVVAATVLQKMFMTGFSGDLEAAHAKGTQLAGEAIAN 891
Query: 704 IRTVAAYGIEKRISIQFASELSQPNKQALLRGHISGFGYGVSQLLSLCSYALGLWYASVL 763
+RTVAA+ E +I + + L P K+ +G I+G GYGV+Q SYALGLWYAS L
Sbjct: 892 VRTVAAFNSEAKIVRLYTANLEPPLKRCFWKGQIAGSGYGVAQFCLYASYALGLWYASWL 951
Query: 764 IKQKGSNFGDIMKSFMVXXXXXXXXXXXXXXXPDIVKGSQALGPVFGILYRKTAIQPDDP 823
+K S+F ++ FMV PD +KG QA+ VF +L RKT I+PDDP
Sbjct: 952 VKHGISDFSKTIRVFMVLMVSANGAAETLTLAPDFIKGGQAMRSVFELLDRKTEIEPDDP 1011
Query: 824 ASKEVTE-IKGNIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISL 882
+ V + ++G +EL+++ F YP RPDI IF +L+L+ AG++LA+VG SG GKS+VISL
Sbjct: 1012 DTTPVPDRLRGEVELKHIDFSYPSRPDIQIFRDLSLRARAGKTLALVGPSGCGKSSVISL 1071
Query: 883 VMRFYDPISGTVLIDGYDIRTLNLRSLRRKIGLVQQEPALFSTTIYENIKYGNEDASEIE 942
+ RFY+P SG V+IDG DIR NL+++R+ I +V QEP LF TTIYENI YG+E A+E E
Sbjct: 1072 IQRFYEPSSGRVMIDGKDIRKYNLKAIRKHIAIVPQEPCLFGTTIYENIAYGHECATEAE 1131
Query: 943 LMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATS 1002
+++A A+AH FIS +PEGY+++VG+RGVQLSGGQKQR+AIARA+++ I+LLDEATS
Sbjct: 1132 IIQAATLASAHKFISALPEGYKTYVGERGVQLSGGQKQRIAIARALVRKAEIMLLDEATS 1191
Query: 1003 ALDTASENLIQEALDKLMEGRTTIMVAHRLSTIRNADKIAVLQQGKVAEIGSHEQLLRKE 1062
ALD SE +QEALD+ GRT+I+VAHRLSTIRNA IAV+ GKVAE GSH LL+
Sbjct: 1192 ALDAESERSVQEALDQACSGRTSIVVAHRLSTIRNAHVIAVIDDGKVAEQGSHSHLLKNH 1251
Query: 1063 -NGIYKQLIRLQQ 1074
+GIY ++I+LQ+
Sbjct: 1252 PDGIYARMIQLQR 1264
|
|
| UNIPROTKB|Q8GU75 mdr11 "MDR-like ABC transporter" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
Score = 2641 (934.7 bits), Expect = 1.0e-274, P = 1.0e-274
Identities = 529/1091 (48%), Positives = 744/1091 (68%)
Query: 2 QTGHALRYLSQFFVGFAVGFTSVWQLTLLTLAVVPLIAVAGGAYTITMSTLSEKGEAAYG 61
+ G+ + Y+S+F GFA+GF+ VWQ++L+TLA+VPLIA+AGG Y L + +Y
Sbjct: 173 KVGNFMHYISRFLAGFAIGFSQVWQISLVTLAIVPLIAIAGGIYAYVTIGLMARVRKSYV 232
Query: 62 EAGKVAEEIISQVRAVYAFVGEAKAIESYSHSLKEALKQGKKSGVAKGIGVGLTYGLLFC 121
+AG++AEE+I VR V AFVGE KA+ +Y +L K GK+ G+AKG+G+G + +LF
Sbjct: 233 KAGEIAEEVIGNVRTVQAFVGEEKAVRTYREALLRTYKYGKRGGLAKGLGLGSMHSVLFL 292
Query: 122 AWALLLWYAGILVRHGDTNGGKAFTTIINVIFSGFALGQXXXXXXXXXXXXXXXXXXXXX 181
+WALL+W+ ++V +NGG++FTT++NV+ +G +LGQ
Sbjct: 293 SWALLIWFTSVVVHKNISNGGESFTTMLNVVIAGLSLGQAAPNISTFLRARTAAYPIFQM 352
Query: 182 XXXXSHSSERPGDDGITLPKLAGQIEFSEVCFAYPSRPHMVFENLNFSVD--AGKTFAFV 239
+ ++ G TLP + G I+F +V FAYPSRP +V + FS+D AGK A V
Sbjct: 353 IERNT-VNKASSKAGRTLPSVDGHIQFRDVRFAYPSRPDVVILD-RFSLDFPAGKIVALV 410
Query: 240 GPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGLVSQEPALFATSIAN 299
G SGSGKST++S+++R YEP +G +LLDGHD+K L +KWLR+Q+GLV+QEPALFATSI
Sbjct: 411 GGSGSGKSTVVSLIERFYEPLTGAVLLDGHDIKDLDVKWLRQQIGLVNQEPALFATSIRE 470
Query: 300 NILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVL 359
NIL GK DASMD + AAK + A +F+ LPD Y+TQVGE G QLSGGQKQRIAI+RA+L
Sbjct: 471 NILYGKGDASMDEINHAAKLSEAITFINHLPDRYETQVGERGIQLSGGQKQRIAISRAIL 530
Query: 360 RNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRDVDTIMVLKNGQV 419
+NP ILLLDEATSALDAESE VQ AL+++M RTT+V+AHRLST+R+ DTI V+ +G++
Sbjct: 531 KNPSILLLDEATSALDAESEKSVQEALDRVMVGRTTVVIAHRLSTIRNADTIAVVDSGRI 590
Query: 420 VESGTHVDLISKG-GEYAALVNLQSSEHLSNPXXXXXXXXXXXXXFRDFPS--SRR---- 472
VE+GTH L++ YA+L+ LQ + L N + SR
Sbjct: 591 VETGTHEQLMANPRSAYASLIQLQEAAQLQNKQSFSDSASLSRPLSSKYSRELSRTSMGG 650
Query: 473 -YDVEFES-SKRRELQSSDQSFAPS-P-SIWELLKLNAAEWPYAVLGSVGAILAGMEAPL 528
+ E +S S+ +++ D+ S P S+ +L + +W + V G+V A +AG + PL
Sbjct: 651 SFRSEKDSVSRYGTVEAHDEGGHKSKPVSMKKLYSMIRPDWFFGVSGTVSAFVAGSQMPL 710
Query: 529 FALGITHILTAFYSPHDSQIKRVVDQVALIFVGLAVVTIPVYLLQHYFYTLMGEHLTARV 588
FALG+T L ++Y ++ KR V ++A++F AV+T+ + ++H + +MGE LT RV
Sbjct: 711 FALGVTQALVSYYMGWETT-KREVRKIAVLFCCGAVLTVVFHAIEHLSFGIMGERLTLRV 769
Query: 589 RLSMFSAILSNEIGWFDLDENNTGLLISTLAADATLVRSALADRLSIIVQNVALTVTAFV 648
R MF+AIL NEIGWFD + + +L S L DATLVR+ + DR +I++QN+ + VT+ +
Sbjct: 770 RERMFAAILRNEIGWFDDTSHTSSMLSSRLETDATLVRTIVVDRSTILLQNIGMIVTSLI 829
Query: 649 IAFILSWRXXXXXXXXXXXXIGAFVAEQLFLKGFGGDYNRAYSRATSVAREAIANIRTVA 708
IAFI++WR + ++E++F+KG+GG+ ++Y +A +A EA++NIRTVA
Sbjct: 830 IAFIINWRITLVVLATYPLMVSGHISEKMFMKGYGGNLGKSYLKANMLAAEAVSNIRTVA 889
Query: 709 AYGIEKRISIQFASELSQPNKQALLRGHISGFGYGVSQLLSLCSYALGLWYASVLIKQKG 768
A+ E+++ +A EL +P KQ+ RG +G YGVSQ SYAL LWY S L+ ++
Sbjct: 890 AFCAEEKVIKLYADELKEPAKQSFRRGQGAGLFYGVSQFFLFSSYALALWYGSELMSKEM 949
Query: 769 SNFGDIMKSFMVXXXXXXXXXXXXXXXPDIVKGSQALGPVFGILYRKTAIQPDDPASKEV 828
++F +MKSFMV PDI+KG+Q + VF IL RKT + D A +V
Sbjct: 950 ASFKSVMKSFMVLIVTALAMGETLAMAPDIIKGNQMVSSVFEILDRKTDVLID--AGNDV 1007
Query: 829 TEIKGNIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYD 888
++G IELR V F+YP RP++ +F+ L+L + AG+S+A+VG SGSGKSTV+SL++RFYD
Sbjct: 1008 KRVEGVIELRGVEFRYPARPEVVVFKGLDLLMKAGKSMALVGMSGSGKSTVLSLILRFYD 1067
Query: 889 PISGTVLIDGYDIRTLNLRSLRRKIGLVQQEPALFSTTIYENIKYGNEDASEIELMKATK 948
PI+G VLIDG DIR + L+SLR+ IGLVQQEPALF+TTIY+NI YG + A+E E++ A K
Sbjct: 1068 PIAGKVLIDGKDIRKVKLKSLRKHIGLVQQEPALFATTIYDNILYGKDGATEAEVVDAAK 1127
Query: 949 AANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTAS 1008
ANAH FIS +PEGY++ VG+RGVQLSGGQ+QR+AIARAI+K+P+ILLLDEATSALD S
Sbjct: 1128 LANAHSFISALPEGYRTRVGERGVQLSGGQRQRIAIARAIVKDPAILLLDEATSALDVES 1187
Query: 1009 ENLIQEALDKLMEGRTTIMVAHRLSTIRNADKIAVLQQGKVAEIGSHEQLLRKENGIYKQ 1068
E ++Q+ALD++M RTT+MVAHRLSTI+NAD I+VLQ GK+ E G+H QL+ NG Y +
Sbjct: 1188 ERVVQQALDRVMRNRTTVMVAHRLSTIKNADVISVLQDGKIIEQGAHHQLIENRNGAYHK 1247
Query: 1069 LIRLQQDKNPE 1079
L+ LQQ + +
Sbjct: 1248 LVSLQQQQQQQ 1258
|
|
| TAIR|locus:2120805 ABCB2 "ATP-binding cassette B2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2622 (928.0 bits), Expect = 1.0e-272, P = 1.0e-272
Identities = 521/1082 (48%), Positives = 740/1082 (68%)
Query: 2 QTGHALRYLSQFFVGFAVGFTSVWQLTLLTLAVVPLIAVAGGAYTITMSTLSEKGEAAYG 61
+ G+ L Y+S+F GFA+GFTSVWQ++L+TL++VPLIA+AGG Y L + +Y
Sbjct: 198 KVGNFLHYISRFIAGFAIGFTSVWQISLVTLSIVPLIALAGGIYAFVAIGLIARVRKSYI 257
Query: 62 EAGKVAEEIISQVRAVYAFVGEAKAIESYSHSLKEALKQGKKSGVAKGIGVGLTYGLLFC 121
+AG++AEE+I VR V AF GE +A+ Y +L+ K G+K+G+ KG+G+G + +LF
Sbjct: 258 KAGEIAEEVIGNVRTVQAFTGEERAVRLYREALENTYKYGRKAGLTKGLGLGSMHCVLFL 317
Query: 122 AWALLLWYAGILVRHGDTNGGKAFTTIINVIFSGFALGQXXXXXXXXXXXXXXXXXXXXX 181
+WALL+W+ ++V +GGK+FTT++NV+ +G +LGQ
Sbjct: 318 SWALLVWFTSVVVHKDIADGGKSFTTMLNVVIAGLSLGQAAPDISAFVRAKAAAYPIFKM 377
Query: 182 XXXXSHSSERPGDDGITLPKLAGQIEFSEVCFAYPSRPHMV-FENLNFSVDAGKTFAFVG 240
+ ++ G L K+ G I+F + F+YPSRP +V F+ LN ++ AGK A VG
Sbjct: 378 IERNT-VTKTSAKSGRKLGKVDGHIQFKDATFSYPSRPDVVIFDRLNLAIPAGKIVALVG 436
Query: 241 PSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGLVSQEPALFATSIANN 300
SGSGKST+IS+++R YEP SG +LLDG+++ L +KWLR Q+GLV+QEPALFAT+I N
Sbjct: 437 GSGSGKSTVISLIERFYEPISGAVLLDGNNISELDIKWLRGQIGLVNQEPALFATTIREN 496
Query: 301 ILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLR 360
IL GK+DA+ + + AAK + A SF+ LP+G++TQVGE G QLSGGQKQRIAI+RA+++
Sbjct: 497 ILYGKDDATAEEITRAAKLSEAISFINNLPEGFETQVGERGIQLSGGQKQRIAISRAIVK 556
Query: 361 NPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRDVDTIMVLKNGQVV 420
NP ILLLDEATSALDAESE VQ AL+++M RTT+VVAHRLSTVR+ D I V+ G++V
Sbjct: 557 NPSILLLDEATSALDAESEKSVQEALDRVMVGRTTVVVAHRLSTVRNADIIAVVHEGKIV 616
Query: 421 ESGTHVDLISK-GGEYAALVNLQSSEHLS-NPXXXXXXXXXXXXXF-RDFPSSRR-YDVE 476
E G H +LIS G Y++L+ LQ + L NP + R+ +R + E
Sbjct: 617 EFGNHENLISNPDGAYSSLLRLQETASLQRNPSLNRTLSRPHSIKYSRELSRTRSSFCSE 676
Query: 477 FESSKRRELQSSDQSFAPSPSIWELLKLNAAEWPYAVLGSVGAILAGMEAPLFALGITHI 536
ES R + +D S ++ L + +W Y V G++ A +AG + PLFALG++
Sbjct: 677 RESVTRPD--GADPSKKVKVTVGRLYSMIRPDWMYGVCGTICAFIAGSQMPLFALGVSQA 734
Query: 537 LTAFYSPHDSQIKRVVDQVALIFVGLAVVTIPVYLLQHYFYTLMGEHLTARVRLSMFSAI 596
L ++YS D + ++ + ++A++F +V+T+ VY ++H + MGE LT RVR +MF AI
Sbjct: 735 LVSYYSGWD-ETQKEIKKIAILFCCASVITLIVYTIEHICFGTMGERLTLRVRENMFRAI 793
Query: 597 LSNEIGWFDLDENNTGLLISTLAADATLVRSALADRLSIIVQNVALTVTAFVIAFILSWR 656
L NEIGWFD +N + +L S L +DATL+++ + DR +I++QN+ L VT+F+IAFIL+WR
Sbjct: 794 LKNEIGWFDEVDNTSSMLASRLESDATLLKTIVVDRSTILLQNLGLVVTSFIIAFILNWR 853
Query: 657 XXXXXXXXXXXXIGAFVAEQLFLKGFGGDYNRAYSRATSVAREAIANIRTVAAYGIEKRI 716
I ++E+LF++G+GGD N+AY +A +A E+++NIRTVAA+ E++I
Sbjct: 854 LTLVVLATYPLVISGHISEKLFMQGYGGDLNKAYLKANMLAGESVSNIRTVAAFCAEEKI 913
Query: 717 SIQFASELSQPNKQALLRGHISGFGYGVSQLLSLCSYALGLWYASVLIKQKGSNFGDIMK 776
++ EL +P+K + RG I+G YGVSQ SY L LWY S L+ + + F +MK
Sbjct: 914 LELYSRELLEPSKSSFRRGQIAGLFYGVSQFFIFSSYGLALWYGSTLMDKGLAGFKSVMK 973
Query: 777 SFMVXXXXXXXXXXXXXXXPDIVKGSQALGPVFGILYRKTAIQPDDPASKEVTEIKGNIE 836
+FMV PD++KG+Q + VF IL RKT I + S+E+ ++G IE
Sbjct: 974 TFMVLIVTALAMGETLALAPDLLKGNQMVASVFEILDRKTQIVGE--TSEELNNVEGTIE 1031
Query: 837 LRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLI 896
L+ V F YP RPD+ IF + +L V AG+S+A+VGQSGSGKS+VISL++RFYDP +G V+I
Sbjct: 1032 LKGVHFSYPSRPDVVIFRDFDLIVRAGKSMALVGQSGSGKSSVISLILRFYDPTAGKVMI 1091
Query: 897 DGYDIRTLNLRSLRRKIGLVQQEPALFSTTIYENIKYGNEDASEIELMKATKAANAHGFI 956
+G DI+ L+L++LR+ IGLVQQEPALF+TTIYENI YGNE AS+ E++++ ANAH FI
Sbjct: 1092 EGKDIKKLDLKALRKHIGLVQQEPALFATTIYENILYGNEGASQSEVVESAMLANAHSFI 1151
Query: 957 SRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEAL 1016
+ +PEGY + VG+RGVQ+SGGQ+QR+AIARAILKNP+ILLLDEATSALD SE ++Q+AL
Sbjct: 1152 TSLPEGYSTKVGERGVQMSGGQRQRIAIARAILKNPAILLLDEATSALDVESERVVQQAL 1211
Query: 1017 DKLMEGRTTIMVAHRLSTIRNADKIAVLQQGKVAEIGSHEQLLRKENGIYKQLIRLQQDK 1076
D+LM RTT++VAHRLSTI+NAD I+VL GK+ E GSH +L+ ++G Y +LI LQQ +
Sbjct: 1212 DRLMANRTTVVVAHRLSTIKNADTISVLHGGKIVEQGSHRKLVLNKSGPYFKLISLQQQQ 1271
Query: 1077 NP 1078
P
Sbjct: 1272 QP 1273
|
|
| TAIR|locus:2019958 PGP10 "P-glycoprotein 10" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2591 (917.1 bits), Expect = 2.0e-269, P = 2.0e-269
Identities = 512/1077 (47%), Positives = 734/1077 (68%)
Query: 2 QTGHALRYLSQFFVGFAVGFTSVWQLTLLTLAVVPLIAVAGGAYTITMSTLSEKGEAAYG 61
+ G+ + ++S+F GFA+GF SVWQ++L+TL++VP IA+AGG Y S L + +Y
Sbjct: 162 KVGNFMHFISRFIAGFAIGFASVWQISLVTLSIVPFIALAGGIYAFVSSGLIVRVRKSYV 221
Query: 62 EAGKVAEEIISQVRAVYAFVGEAKAIESYSHSLKEALKQGKKSGVAKGIGVGLTYGLLFC 121
+A ++AEE+I VR V AF GE KA+ SY +L+ G+K+G+AKG+G+G + +LF
Sbjct: 222 KANEIAEEVIGNVRTVQAFTGEEKAVSSYQGALRNTYNYGRKAGLAKGLGLGSLHFVLFL 281
Query: 122 AWALLLWYAGILVRHGDTNGGKAFTTIINVIFSGFALGQXXXXXXXXXXXXXXXXXXXXX 181
+WALL+W+ I+V G NGG++FTT++NV+ +G +LGQ
Sbjct: 282 SWALLIWFTSIVVHKGIANGGESFTTMLNVVIAGLSLGQAAPDISTFMRASAAAYPIFQM 341
Query: 182 XXXXSHSSERPGDD--GITLPKLAGQIEFSEVCFAYPSRPHMV-FENLNFSVDAGKTFAF 238
ER +D G L + G I F +V F YPSRP +V F+ LNF + AGK A
Sbjct: 342 I-------ERNTEDKTGRKLGNVNGDILFKDVTFTYPSRPDVVIFDKLNFVIPAGKVVAL 394
Query: 239 VGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGLVSQEPALFATSIA 298
VG SGSGKST+IS+++R YEPT G ++LDG+D++ L LKWLR +GLV+QEP LFAT+I
Sbjct: 395 VGGSGSGKSTMISLIERFYEPTDGAVMLDGNDIRYLDLKWLRGHIGLVNQEPVLFATTIR 454
Query: 299 NNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAV 358
NI+ GK+DA+ + + AAK + A SF+ LP+G++TQVGE G QLSGGQKQRI+I+RA+
Sbjct: 455 ENIMYGKDDATSEEITNAAKLSEAISFINNLPEGFETQVGERGIQLSGGQKQRISISRAI 514
Query: 359 LRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRDVDTIMVLKNGQ 418
++NP ILLLDEATSALDAESE IVQ AL+++M RTT+VVAHRLSTVR+ D I V+ G+
Sbjct: 515 VKNPSILLLDEATSALDAESEKIVQEALDRVMVGRTTVVVAHRLSTVRNADIIAVVGGGK 574
Query: 419 VVESGTHVDLISK-GGEYAALVNLQSSEHLSNPXXXXXXXXXXXXXFRDFPSSRRYDVEF 477
++ESG+H +LIS G Y++L+ +Q E S + P + E
Sbjct: 575 IIESGSHDELISNPDGAYSSLLRIQ--EAASPNLNHTPSLPVSTKPLPELPIT-----ET 627
Query: 478 ESSKRRELQSSDQSFAPSPSIWELLKLNAAEWPYAVLGSVGAILAGMEAPLFALGITHIL 537
SS + + D + ++ L + +W Y + G++G+ +AG + PLFALGI L
Sbjct: 628 TSSIHQSVNQPDTTKQAKVTVGRLYSMIRPDWKYGLCGTLGSFIAGSQMPLFALGIAQAL 687
Query: 538 TAFYSPHDSQIKRVVDQVALIFVGLAVVTIPVYLLQHYFYTLMGEHLTARVRLSMFSAIL 597
++Y ++ + V +++++F +V+T+ V+ ++H + +MGE LT RVR MFSAIL
Sbjct: 688 VSYYMDWETT-QNEVKRISILFCCGSVITVIVHTIEHTTFGIMGERLTLRVRQKMFSAIL 746
Query: 598 SNEIGWFDLDENNTGLLISTLAADATLVRSALADRLSIIVQNVALTVTAFVIAFILSWRX 657
NEIGWFD +N + +L S L +DATL+R+ + DR +I+++N+ L VTAF+I+FIL+WR
Sbjct: 747 RNEIGWFDKVDNTSSMLASRLESDATLLRTIVVDRSTILLENLGLVVTAFIISFILNWRL 806
Query: 658 XXXXXXXXXXXIGAFVAEQLFLKGFGGDYNRAYSRATSVAREAIANIRTVAAYGIEKRIS 717
I ++E++F++G+GG+ ++AY +A +A E+I+NIRTV A+ E+++
Sbjct: 807 TLVVLATYPLIISGHISEKIFMQGYGGNLSKAYLKANMLAGESISNIRTVVAFCAEEKVL 866
Query: 718 IQFASELSQPNKQALLRGHISGFGYGVSQLLSLCSYALGLWYASVLIKQKGSNFGDIMKS 777
++ EL +P++++ RG ++G YGVSQ SY L LWY S+L+++ S+F +MK+
Sbjct: 867 DLYSKELLEPSERSFRRGQMAGILYGVSQFFIFSSYGLALWYGSILMEKGLSSFESVMKT 926
Query: 778 FMVXXXXXXXXXXXXXXXPDIVKGSQALGPVFGILYRKTAIQPDDPASKEVTEIKGNIEL 837
FMV PD++KG+Q + VF +L R+T + D +E++ ++G IEL
Sbjct: 927 FMVLIVTALVMGEVLALAPDLLKGNQMVVSVFELLDRRTQVVGD--TGEELSNVEGTIEL 984
Query: 838 RNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLID 897
+ V F YP RPD+TIF + NL V +G+S+A+VGQSGSGKS+V+SLV+RFYDP +G ++ID
Sbjct: 985 KGVHFSYPSRPDVTIFSDFNLLVPSGKSMALVGQSGSGKSSVLSLVLRFYDPTAGIIMID 1044
Query: 898 GYDIRTLNLRSLRRKIGLVQQEPALFSTTIYENIKYGNEDASEIELMKATKAANAHGFIS 957
G DI+ L L+SLRR IGLVQQEPALF+TTIYENI YG E ASE E+M+A K ANAH FIS
Sbjct: 1045 GQDIKKLKLKSLRRHIGLVQQEPALFATTIYENILYGKEGASESEVMEAAKLANAHSFIS 1104
Query: 958 RMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEALD 1017
+PEGY + VG+RG+Q+SGGQ+QR+AIARA+LKNP ILLLDEATSALD SE ++Q+ALD
Sbjct: 1105 SLPEGYSTKVGERGIQMSGGQRQRIAIARAVLKNPEILLLDEATSALDVESERVVQQALD 1164
Query: 1018 KLMEGRTTIMVAHRLSTIRNADKIAVLQQGKVAEIGSHEQLLRKENGIYKQLIRLQQ 1074
+LM RTT++VAHRLSTI+N+D I+V+Q GK+ E GSH L+ +NG Y +LI LQQ
Sbjct: 1165 RLMRDRTTVVVAHRLSTIKNSDMISVIQDGKIIEQGSHNILVENKNGPYSKLISLQQ 1221
|
|
| UNIPROTKB|Q7EZL2 P0705A05.112-2 "Putative P-glycoprotein 1" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
Score = 1394 (495.8 bits), Expect = 2.0e-263, Sum P(2) = 2.0e-263
Identities = 310/735 (42%), Positives = 447/735 (60%)
Query: 355 ARAVLRNPKILLLDEATSA-LDAESELIVQRALEKIM-SNRTTIVVAHRLSTVRDVDTIM 412
A + L + L+ EA + + L++ L I ++ ++ +S V D +M
Sbjct: 597 ATSALDSESEKLVQEALDRFMIGRTTLVIAHRLSTIRKADLVAVLQGGAISEVGTHDELM 656
Query: 413 VLKNGQVVESGTHVDLI--SKGGEYAALVNLQ-SSEHLSNPXXXXXX-XXXXXXXFRDFP 468
G GT+ LI + AALV + SS S+ + P
Sbjct: 657 A--RGD----GTYARLIRMQEQAHEAALVAARRSSARPSSARNSVSSPIITRNSSYGRSP 710
Query: 469 SSRRY-DVEFESSKRRELQSSDQS----F-APSPSIWELLKLNAAEWPYAVLGSVGAILA 522
SRR D +F + + S Q F + S W L K+N+ EW YA++ S+G+++
Sbjct: 711 YSRRLSDADFITGLGLGVDSKQQQQQHYFRVQASSFWRLAKMNSPEWGYALVASLGSMVC 770
Query: 523 GMEAPLFALGITHILTAFYSPHDSQIKRVVDQVALIFVGLAVVTIPVYLLQHYFYTLMGE 582
G + +FA ++ +L+ +Y+P + + R + + + +G++ + +QH F+ +GE
Sbjct: 771 GSFSAIFAYVLSAVLSVYYAPDAAYMDRQIAKYCYLLIGMSSAALLFNTVQHLFWDTVGE 830
Query: 583 HLTARVRLSMFSAILSNEIGWFDLDENNTGLLISTLAADATLVRSALADRLSIIVQNVAL 642
+LT RVR M +A+L NEI WFD+++N++ + + LA DA VRSA+ DR+SIIVQN AL
Sbjct: 831 NLTKRVRERMLAAVLRNEIAWFDMEDNSSARIAARLALDAQNVRSAIGDRISIIVQNSAL 890
Query: 643 TVTAFVIAFILSWRXXXXXXXXXXXXIGAFVAEQLFLKGFGGDYNRAYSRATSVAREAIA 702
+ A F+L WR + A V +++FLKGF GD RA++RAT +A EA+A
Sbjct: 891 MLVACTAGFVLQWRLALVLLAVFPLVVAATVLQKMFLKGFSGDLERAHARATQIAGEAVA 950
Query: 703 NIRTVAAYGIEKRISIQFASELSQPNKQALLRGHISGFGYGVSQLLSLCSYALGLWYASV 762
N+RTVAA+G E +I F + L+ P ++ +G I+G GYGV+Q L SYALGLWYA+
Sbjct: 951 NVRTVAAFGSEAKIVGLFEANLAGPLRRCFWKGQIAGSGYGVAQFLLYASYALGLWYAAW 1010
Query: 763 LIKQKGSNFGDIMKSFMVXXXXXXXXXXXXXXXPDIVKGSQALGPVFGILYRKTAIQPDD 822
L+K S+F ++ FMV PD VKG +A+ VF + R+T I+PDD
Sbjct: 1011 LVKHGVSDFSKTIRVFMVLMVSANGAAETLTLAPDFVKGGRAMQAVFEAMDRRTEIEPDD 1070
Query: 823 PASKEVTEI-KGNIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVIS 881
+ V E +G +EL++V F YP RP++ +F +L+L+ AGR+LA+VG SG GKS+V++
Sbjct: 1071 VDAAAVPERPRGEVELKHVDFAYPSRPEVQVFRDLSLRARAGRTLALVGASGCGKSSVLA 1130
Query: 882 LVMRFYDPISGTVLIDGYDIRTLNLRSLRRKIGLVQQEPALFSTTIYENIKYGNEDASEI 941
LV RFY+P SG VL+DG D+R NLRSLRR + LV QEP LF+ TI++NI YG E A+E
Sbjct: 1131 LVQRFYEPNSGRVLLDGRDLRKFNLRSLRRAMALVPQEPFLFAATIHDNIAYGREGATEA 1190
Query: 942 ELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEAT 1001
E+++A AANAH FIS +PEGY + VG+RGVQLSGGQ+QR+AIARA++K ILLLDEAT
Sbjct: 1191 EVVEAATAANAHKFISALPEGYGTLVGERGVQLSGGQRQRIAIARALVKQAPILLLDEAT 1250
Query: 1002 SALDTASENLIQEALDKLM-EGRTTIMVAHRLSTIRNADKIAVLQQGKVAEIGSHEQLLR 1060
SALD SE +QEAL GRTTI+VAHRL+T+RNA IAV+ GKVAE GSH LL
Sbjct: 1251 SALDAESERSVQEALASSSGSGRTTIVVAHRLATVRNAHTIAVIDDGKVAEQGSHSHLLN 1310
Query: 1061 KE-NGIYKQLIRLQQ 1074
+G Y ++++LQ+
Sbjct: 1311 HHPDGCYARMLQLQR 1325
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| TAIR|locus:2088897 ABCB15 "ATP-binding cassette B15" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2291 (811.5 bits), Expect = 1.2e-237, P = 1.2e-237
Identities = 477/1075 (44%), Positives = 664/1075 (61%)
Query: 14 FVG-FAVGFTSVWQLTLLTLAVVPLIAVAGGAYTITMSTLSEKGEAAYGEAGKVAEEIIS 72
FVG + VGF +W+L ++ L + L+ + G Y + ++S K Y EAG VAE+ IS
Sbjct: 168 FVGSYIVGFILLWRLAIVGLPFIVLLVIPGLMYGRALISISRKIREEYNEAGFVAEQAIS 227
Query: 73 QVRAVYAFVGEAKAIESYSHSLKEALKQGKKSGVAKGIGVGLTYGLLFCAWALLLWYAGI 132
VR VYAF GE K I +S +L+ ++K G K G+AKGI +G + G+ F W + WY
Sbjct: 228 SVRTVYAFSGERKTISKFSTALQGSVKLGIKQGLAKGITIG-SNGITFAMWGFMSWYGSR 286
Query: 133 LVRHGDTNGGKAFTTIINVIFSGFALGQXXXXXXXXXXXXXXXXXXXXXXXXXSH-SSER 191
+V + GG F + G +LG S+
Sbjct: 287 MVMYHGAQGGTVFAVAAAIAIGGVSLGGGLSNLKYFFEAASVGERIMEVINRVPKIDSDN 346
Query: 192 PGDDGITLPKLAGQIEFSEVCFAYPSRPHM-VFENLNFSVDAGKTFAFVGPSGSGKSTII 250
P DG L K+ G++EF V F YPSR +F++ V +GKT A VG SGSGKST+I
Sbjct: 347 P--DGHKLEKIRGEVEFKNVKFVYPSRLETSIFDDFCLRVPSGKTVALVGGSGSGKSTVI 404
Query: 251 SMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNILLGKEDASM 310
S++QR Y+P +G+IL+DG + LQ+KWLR QMGLVSQEPALFAT+I NIL GKEDASM
Sbjct: 405 SLLQRFYDPLAGEILIDGVSIDKLQVKWLRSQMGLVSQEPALFATTIKENILFGKEDASM 464
Query: 311 DRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEA 370
D V+EAAKA+NAH+F+ LP+GY+TQVGE G Q+SGGQKQRIAIARA++++P ILLLDEA
Sbjct: 465 DDVVEAAKASNAHNFISQLPNGYETQVGERGVQMSGGQKQRIAIARAIIKSPTILLLDEA 524
Query: 371 TSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRDVDTIMVLKNGQVVESGTHVDLIS 430
TSALD+ESE +VQ ALE RTTI++AHRLST+R+ D I V+KNG +VE+G+H +L+
Sbjct: 525 TSALDSESERVVQEALENASIGRTTILIAHRLSTIRNADVISVVKNGHIVETGSHDELME 584
Query: 431 K-GGEYAALVNLQSSEHLSNPXXXXXXXXXXXXXFRDFPSSRRYDVEFESSKRRELQS-- 487
G+Y+ LV+LQ E +D +S R SS +
Sbjct: 585 NIDGQYSTLVHLQQIE--KQDINVSVKIGPISDPSKDIRNSSRVSTLSRSSSANSVTGPS 642
Query: 488 -----SDQSFAPSPSIWELLKLNAAEWPYAVLGSVGAILAGMEAPLFALGITHILTAFY- 541
S+ + PS LL +N EW A+ G + A L G P +A + +++ ++
Sbjct: 643 TIKNLSEDNKPQLPSFKRLLAMNLPEWKQALYGCISATLFGAIQPAYAYSLGSMVSVYFL 702
Query: 542 SPHDSQIKRVVDQVALIFVGLAVVTIPVYLLQHYFYTLMGEHLTARVRLSMFSAILSNEI 601
+ HD +IK AL FVGLAV++ + + QHY + MGE+LT R+R M S +L+ E+
Sbjct: 703 TSHD-EIKEKTRIYALSFVGLAVLSFLINISQHYNFAYMGEYLTKRIRERMLSKVLTFEV 761
Query: 602 GWFDLDENNTGLLISTLAADATLVRSALADRLSIIVQNVALTVTAFVIAFILSWRXXXXX 661
GWFD DEN++G + S LA DA +VRS + DR++++VQ V+ AF + +++WR
Sbjct: 762 GWFDRDENSSGAICSRLAKDANVVRSLVGDRMALVVQTVSAVTIAFTMGLVIAWRLALVM 821
Query: 662 XXXXXXXIGAFVAEQLFLKGFGGDYNRAYSRATSVAREAIANIRTVAAYGIEKRISIQFA 721
I F ++ LK +A ++ +A EA++N+RT+ A+ ++RI
Sbjct: 822 IAVQPVIIVCFYTRRVLLKSMSKKAIKAQDESSKLAAEAVSNVRTITAFSSQERIMKMLE 881
Query: 722 SELSQPNKQALLRGHISGFGYGVSQLLSLCSYALGLWYASVLIKQKGSNFGDIMKSFMVX 781
P ++++ + +GFG +SQ L+ C++AL WY LI+ + ++FM+
Sbjct: 882 KAQESPRRESIRQSWFAGFGLAMSQSLTSCTWALDFWYGGRLIQDGYITAKALFETFMIL 941
Query: 782 XXXXXXXXXXXXXXPDIVKGSQALGPVFGILYRKTAIQPDDPASKEVTEIKGNIELRNVS 841
D+ KGS A+G VF +L R T+I P+DP E I G +E +V
Sbjct: 942 VSTGRVIADAGSMTTDLAKGSDAVGSVFAVLDRYTSIDPEDPDGYETERITGQVEFLDVD 1001
Query: 842 FKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDI 901
F YP RPD+ IF+N ++K+ G+S A+VG SGSGKST+I L+ RFYDP+ G V IDG DI
Sbjct: 1002 FSYPTRPDVIIFKNFSIKIEEGKSTAIVGPSGSGKSTIIGLIERFYDPLKGIVKIDGRDI 1061
Query: 902 RTLNLRSLRRKIGLVQQEPALFSTTIYENIKYG--NEDASEIELMKATKAANAHGFISRM 959
R+ +LRSLRR I LV QEP LF+ TI ENI YG ++ E E+++A KAANAH FI+ +
Sbjct: 1062 RSYHLRSLRRHIALVSQEPTLFAGTIRENIIYGGVSDKIDEAEIIEAAKAANAHDFITSL 1121
Query: 960 PEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKL 1019
EGY ++ GDRGVQLSGGQKQR+AIARA+LKNPS+LLLDEATSALD+ SE ++Q+AL+++
Sbjct: 1122 TEGYDTYCGDRGVQLSGGQKQRIAIARAVLKNPSVLLLDEATSALDSQSERVVQDALERV 1181
Query: 1020 MEGRTTIMVAHRLSTIRNADKIAVLQQGKVAEIGSHEQLLRK-ENGIYKQLIRLQ 1073
M GRT++++AHRLSTI+N D IAVL +GK+ E G+H LL K GIY L+ LQ
Sbjct: 1182 MVGRTSVVIAHRLSTIQNCDAIAVLDKGKLVERGTHSSLLSKGPTGIYFSLVSLQ 1236
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries 
Original result of BLAST against SWISS-PROT
ID ![]() | Name ![]() | Annotated EC number ![]() | Identity ![]() | Query coverage ![]() | Hit coverage ![]() | RBH(Q2H) ![]() | RBH(H2Q) ![]() |
| Q9C7F8 | AB13B_ARATH | No assigned EC number | 0.7108 | 0.9889 | 0.8594 | yes | no |
| P06795 | MDR1B_MOUSE | 3, ., 6, ., 3, ., 4, 4 | 0.3987 | 0.9815 | 0.8322 | yes | no |
| P21448 | MDR1_CRIGR | 3, ., 6, ., 3, ., 4, 4 | 0.4 | 0.9824 | 0.8330 | yes | no |
| P08183 | MDR1_HUMAN | 3, ., 6, ., 3, ., 4, 4 | 0.4119 | 0.9870 | 0.8343 | yes | no |
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
| Your Input: | |||||||||||
| GSVIVG00014386001 | SubName- Full=Chromosome chr18 scaffold_1, whole genome shotgun sequence; (1254 aa) | ||||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 1082 | |||
| cd03249 | 238 | cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassett | 1e-139 | |
| cd03249 | 238 | cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassett | 1e-134 | |
| COG1132 | 567 | COG1132, MdlB, ABC-type multidrug transport system | 1e-131 | |
| TIGR02204 | 576 | TIGR02204, MsbA_rel, ABC transporter, permease/ATP | 1e-123 | |
| COG1132 | 567 | COG1132, MdlB, ABC-type multidrug transport system | 1e-115 | |
| cd03251 | 234 | cd03251, ABCC_MsbA, ATP-binding cassette domain of | 1e-115 | |
| TIGR02204 | 576 | TIGR02204, MsbA_rel, ABC transporter, permease/ATP | 1e-114 | |
| TIGR00958 | 711 | TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) | 1e-113 | |
| cd03251 | 234 | cd03251, ABCC_MsbA, ATP-binding cassette domain of | 1e-110 | |
| cd03253 | 236 | cd03253, ABCC_ATM1_transporter, ATP-binding casset | 1e-109 | |
| TIGR02203 | 571 | TIGR02203, MsbA_lipidA, lipid A export permease/AT | 1e-106 | |
| COG2274 | 709 | COG2274, SunT, ABC-type bacteriocin/lantibiotic ex | 1e-104 | |
| TIGR00958 | 711 | TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) | 1e-102 | |
| cd03253 | 236 | cd03253, ABCC_ATM1_transporter, ATP-binding casset | 1e-102 | |
| TIGR02203 | 571 | TIGR02203, MsbA_lipidA, lipid A export permease/AT | 1e-102 | |
| cd03254 | 229 | cd03254, ABCC_Glucan_exporter_like, ATP-binding ca | 1e-101 | |
| COG2274 | 709 | COG2274, SunT, ABC-type bacteriocin/lantibiotic ex | 1e-100 | |
| cd03254 | 229 | cd03254, ABCC_Glucan_exporter_like, ATP-binding ca | 3e-99 | |
| PTZ00265 | 1466 | PTZ00265, PTZ00265, multidrug resistance protein ( | 4e-96 | |
| PRK11176 | 582 | PRK11176, PRK11176, lipid transporter ATP-binding/ | 2e-92 | |
| PRK13657 | 588 | PRK13657, PRK13657, cyclic beta-1,2-glucan ABC tra | 6e-91 | |
| PRK13657 | 588 | PRK13657, PRK13657, cyclic beta-1,2-glucan ABC tra | 6e-89 | |
| TIGR01846 | 694 | TIGR01846, type_I_sec_HlyB, type I secretion syste | 2e-87 | |
| PRK11176 | 582 | PRK11176, PRK11176, lipid transporter ATP-binding/ | 1e-85 | |
| cd03252 | 237 | cd03252, ABCC_Hemolysin, ATP-binding cassette doma | 1e-85 | |
| COG5265 | 497 | COG5265, ATM1, ABC-type transport system involved | 1e-85 | |
| cd03248 | 226 | cd03248, ABCC_TAP, ATP-binding cassette domain of | 1e-83 | |
| cd03252 | 237 | cd03252, ABCC_Hemolysin, ATP-binding cassette doma | 1e-82 | |
| cd03228 | 171 | cd03228, ABCC_MRP_Like, ATP-binding cassette domai | 1e-80 | |
| TIGR01846 | 694 | TIGR01846, type_I_sec_HlyB, type I secretion syste | 4e-80 | |
| cd03228 | 171 | cd03228, ABCC_MRP_Like, ATP-binding cassette domai | 1e-79 | |
| COG5265 | 497 | COG5265, ATM1, ABC-type transport system involved | 1e-76 | |
| cd03248 | 226 | cd03248, ABCC_TAP, ATP-binding cassette domain of | 1e-74 | |
| TIGR01192 | 585 | TIGR01192, chvA, glucan exporter ATP-binding prote | 5e-74 | |
| cd03245 | 220 | cd03245, ABCC_bacteriocin_exporters, ATP-binding c | 5e-72 | |
| TIGR01192 | 585 | TIGR01192, chvA, glucan exporter ATP-binding prote | 3e-70 | |
| TIGR03375 | 694 | TIGR03375, type_I_sec_LssB, type I secretion syste | 2e-69 | |
| TIGR03796 | 710 | TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin syste | 4e-69 | |
| COG4988 | 559 | COG4988, CydD, ABC-type transport system involved | 9e-69 | |
| TIGR03796 | 710 | TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin syste | 3e-68 | |
| cd03245 | 220 | cd03245, ABCC_bacteriocin_exporters, ATP-binding c | 1e-67 | |
| TIGR03375 | 694 | TIGR03375, type_I_sec_LssB, type I secretion syste | 1e-67 | |
| TIGR02857 | 529 | TIGR02857, CydD, thiol reductant ABC exporter, Cyd | 6e-66 | |
| cd03244 | 221 | cd03244, ABCC_MRP_domain2, ATP-binding cassette do | 2e-65 | |
| cd03244 | 221 | cd03244, ABCC_MRP_domain2, ATP-binding cassette do | 5e-65 | |
| COG4987 | 573 | COG4987, CydC, ABC-type transport system involved | 8e-65 | |
| COG4988 | 559 | COG4988, CydD, ABC-type transport system involved | 1e-64 | |
| PRK10789 | 569 | PRK10789, PRK10789, putative multidrug transporter | 4e-64 | |
| PRK10789 | 569 | PRK10789, PRK10789, putative multidrug transporter | 4e-63 | |
| TIGR03797 | 686 | TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin syste | 7e-63 | |
| TIGR03797 | 686 | TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin syste | 1e-62 | |
| PTZ00265 | 1466 | PTZ00265, PTZ00265, multidrug resistance protein ( | 2e-61 | |
| COG4987 | 573 | COG4987, CydC, ABC-type transport system involved | 6e-61 | |
| PRK11160 | 574 | PRK11160, PRK11160, cysteine/glutathione ABC trans | 6e-60 | |
| PRK11174 | 588 | PRK11174, PRK11174, cysteine/glutathione ABC trans | 3e-58 | |
| PRK11174 | 588 | PRK11174, PRK11174, cysteine/glutathione ABC trans | 4e-58 | |
| TIGR02857 | 529 | TIGR02857, CydD, thiol reductant ABC exporter, Cyd | 8e-57 | |
| TIGR01193 | 708 | TIGR01193, bacteriocin_ABC, ABC-type bacteriocin t | 8e-56 | |
| PRK10790 | 592 | PRK10790, PRK10790, putative multidrug transporter | 1e-55 | |
| TIGR01842 | 544 | TIGR01842, type_I_sec_PrtD, type I secretion syste | 3e-55 | |
| PRK10790 | 592 | PRK10790, PRK10790, putative multidrug transporter | 2e-54 | |
| PLN03232 | 1495 | PLN03232, PLN03232, ABC transporter C family membe | 3e-54 | |
| TIGR01193 | 708 | TIGR01193, bacteriocin_ABC, ABC-type bacteriocin t | 1e-53 | |
| PRK11160 | 574 | PRK11160, PRK11160, cysteine/glutathione ABC trans | 2e-53 | |
| COG4618 | 580 | COG4618, ArpD, ABC-type protease/lipase transport | 6e-53 | |
| cd03369 | 207 | cd03369, ABCC_NFT1, ATP-binding cassette domain 2 | 3e-49 | |
| cd03260 | 227 | cd03260, ABC_PstB_phosphate_transporter, ATP-bindi | 3e-49 | |
| cd03261 | 235 | cd03261, ABC_Org_Solvent_Resistant, ATP-binding ca | 1e-48 | |
| TIGR02868 | 530 | TIGR02868, CydC, thiol reductant ABC exporter, Cyd | 5e-48 | |
| cd03246 | 173 | cd03246, ABCC_Protease_Secretion, ATP-binding cass | 6e-48 | |
| TIGR01842 | 544 | TIGR01842, type_I_sec_PrtD, type I secretion syste | 8e-48 | |
| COG1135 | 339 | COG1135, AbcC, ABC-type metal ion transport system | 2e-47 | |
| cd03225 | 211 | cd03225, ABC_cobalt_CbiO_domain1, First domain of | 3e-47 | |
| TIGR02868 | 530 | TIGR02868, CydC, thiol reductant ABC exporter, Cyd | 4e-47 | |
| COG4618 | 580 | COG4618, ArpD, ABC-type protease/lipase transport | 9e-47 | |
| cd03369 | 207 | cd03369, ABCC_NFT1, ATP-binding cassette domain 2 | 1e-46 | |
| cd03259 | 213 | cd03259, ABC_Carb_Solutes_like, ATP-binding casset | 3e-46 | |
| cd03229 | 178 | cd03229, ABC_Class3, ATP-binding cassette domain o | 6e-46 | |
| cd03260 | 227 | cd03260, ABC_PstB_phosphate_transporter, ATP-bindi | 3e-45 | |
| cd03246 | 173 | cd03246, ABCC_Protease_Secretion, ATP-binding cass | 3e-45 | |
| COG1131 | 293 | COG1131, CcmA, ABC-type multidrug transport system | 3e-45 | |
| COG1127 | 263 | COG1127, Ttg2A, ABC-type transport system involved | 4e-45 | |
| cd03257 | 228 | cd03257, ABC_NikE_OppD_transporters, ATP-binding c | 2e-44 | |
| cd03258 | 233 | cd03258, ABC_MetN_methionine_transporter, ATP-bind | 3e-44 | |
| cd03247 | 178 | cd03247, ABCC_cytochrome_bd, ATP-binding cassette | 3e-44 | |
| COG1122 | 235 | COG1122, CbiO, ABC-type cobalt transport system, A | 4e-44 | |
| COG1120 | 258 | COG1120, FepC, ABC-type cobalamin/Fe3+-siderophore | 5e-44 | |
| cd03247 | 178 | cd03247, ABCC_cytochrome_bd, ATP-binding cassette | 7e-44 | |
| cd03250 | 204 | cd03250, ABCC_MRP_domain1, ATP-binding cassette do | 1e-43 | |
| PTZ00265 | 1466 | PTZ00265, PTZ00265, multidrug resistance protein ( | 2e-43 | |
| COG1135 | 339 | COG1135, AbcC, ABC-type metal ion transport system | 2e-43 | |
| cd03225 | 211 | cd03225, ABC_cobalt_CbiO_domain1, First domain of | 2e-43 | |
| COG1125 | 309 | COG1125, OpuBA, ABC-type proline/glycine betaine t | 3e-43 | |
| cd03294 | 269 | cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette | 1e-42 | |
| PRK14250 | 241 | PRK14250, PRK14250, phosphate ABC transporter ATP- | 5e-42 | |
| PLN03130 | 1622 | PLN03130, PLN03130, ABC transporter C family membe | 6e-42 | |
| cd03295 | 242 | cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cas | 8e-42 | |
| COG1136 | 226 | COG1136, SalX, ABC-type antimicrobial peptide tran | 1e-41 | |
| cd03293 | 220 | cd03293, ABC_NrtD_SsuB_transporters, ATP-binding c | 1e-41 | |
| cd03229 | 178 | cd03229, ABC_Class3, ATP-binding cassette domain o | 3e-41 | |
| COG1120 | 258 | COG1120, FepC, ABC-type cobalamin/Fe3+-siderophore | 3e-41 | |
| cd03250 | 204 | cd03250, ABCC_MRP_domain1, ATP-binding cassette do | 5e-41 | |
| cd03258 | 233 | cd03258, ABC_MetN_methionine_transporter, ATP-bind | 7e-41 | |
| cd03293 | 220 | cd03293, ABC_NrtD_SsuB_transporters, ATP-binding c | 7e-41 | |
| COG3842 | 352 | COG3842, PotA, ABC-type spermidine/putrescine tran | 7e-41 | |
| COG1126 | 240 | COG1126, GlnQ, ABC-type polar amino acid transport | 7e-41 | |
| COG1126 | 240 | COG1126, GlnQ, ABC-type polar amino acid transport | 9e-41 | |
| cd03261 | 235 | cd03261, ABC_Org_Solvent_Resistant, ATP-binding ca | 2e-40 | |
| COG3839 | 338 | COG3839, MalK, ABC-type sugar transport systems, A | 2e-40 | |
| COG1122 | 235 | COG1122, CbiO, ABC-type cobalt transport system, A | 1e-39 | |
| cd03230 | 173 | cd03230, ABC_DR_subfamily_A, ATP-binding cassette | 5e-39 | |
| PTZ00265 | 1466 | PTZ00265, PTZ00265, multidrug resistance protein ( | 7e-39 | |
| COG1131 | 293 | COG1131, CcmA, ABC-type multidrug transport system | 7e-39 | |
| cd03257 | 228 | cd03257, ABC_NikE_OppD_transporters, ATP-binding c | 7e-39 | |
| PRK11153 | 343 | PRK11153, metN, DL-methionine transporter ATP-bind | 9e-39 | |
| cd03288 | 257 | cd03288, ABCC_SUR2, ATP-binding cassette domain 2 | 1e-38 | |
| COG1117 | 253 | COG1117, PstB, ABC-type phosphate transport system | 2e-38 | |
| cd03259 | 213 | cd03259, ABC_Carb_Solutes_like, ATP-binding casset | 3e-38 | |
| cd03295 | 242 | cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cas | 3e-38 | |
| TIGR00957 | 1522 | TIGR00957, MRP_assoc_pro, multi drug resistance-as | 5e-38 | |
| cd03255 | 218 | cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding casse | 5e-38 | |
| pfam00664 | 274 | pfam00664, ABC_membrane, ABC transporter transmemb | 6e-38 | |
| COG1116 | 248 | COG1116, TauB, ABC-type nitrate/sulfonate/bicarbon | 7e-38 | |
| cd03288 | 257 | cd03288, ABCC_SUR2, ATP-binding cassette domain 2 | 9e-38 | |
| cd03294 | 269 | cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette | 1e-37 | |
| COG1124 | 252 | COG1124, DppF, ABC-type dipeptide/oligopeptide/nic | 1e-37 | |
| cd03214 | 180 | cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-bind | 1e-37 | |
| COG1125 | 309 | COG1125, OpuBA, ABC-type proline/glycine betaine t | 2e-37 | |
| TIGR00972 | 247 | TIGR00972, 3a0107s01c2, phosphate ABC transporter, | 2e-37 | |
| COG3842 | 352 | COG3842, PotA, ABC-type spermidine/putrescine tran | 3e-37 | |
| cd03214 | 180 | cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-bind | 3e-37 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 3e-37 | |
| cd03299 | 235 | cd03299, ABC_ModC_like, ATP-binding cassette domai | 6e-37 | |
| cd03300 | 232 | cd03300, ABC_PotA_N, ATP-binding cassette domain o | 7e-37 | |
| PRK14250 | 241 | PRK14250, PRK14250, phosphate ABC transporter ATP- | 9e-37 | |
| PLN03130 | 1622 | PLN03130, PLN03130, ABC transporter C family membe | 2e-36 | |
| COG1136 | 226 | COG1136, SalX, ABC-type antimicrobial peptide tran | 2e-36 | |
| cd03230 | 173 | cd03230, ABC_DR_subfamily_A, ATP-binding cassette | 2e-36 | |
| TIGR00957 | 1522 | TIGR00957, MRP_assoc_pro, multi drug resistance-as | 2e-36 | |
| TIGR00972 | 247 | TIGR00972, 3a0107s01c2, phosphate ABC transporter, | 2e-36 | |
| COG0444 | 316 | COG0444, DppD, ABC-type dipeptide/oligopeptide/nic | 2e-36 | |
| COG1121 | 254 | COG1121, ZnuC, ABC-type Mn/Zn transport systems, A | 2e-36 | |
| PRK13632 | 271 | PRK13632, cbiO, cobalt transporter ATP-binding sub | 3e-36 | |
| cd03255 | 218 | cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding casse | 1e-35 | |
| cd03262 | 213 | cd03262, ABC_HisP_GlnQ, ATP-binding cassette domai | 1e-35 | |
| COG1127 | 263 | COG1127, Ttg2A, ABC-type transport system involved | 2e-35 | |
| COG1116 | 248 | COG1116, TauB, ABC-type nitrate/sulfonate/bicarbon | 2e-35 | |
| COG3839 | 338 | COG3839, MalK, ABC-type sugar transport systems, A | 3e-35 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 3e-35 | |
| COG2884 | 223 | COG2884, FtsE, Predicted ATPase involved in cell d | 3e-35 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 4e-35 | |
| cd03262 | 213 | cd03262, ABC_HisP_GlnQ, ATP-binding cassette domai | 4e-35 | |
| cd00267 | 157 | cd00267, ABC_ATPase, ATP-binding cassette transpor | 7e-35 | |
| COG4175 | 386 | COG4175, ProV, ABC-type proline/glycine betaine tr | 8e-35 | |
| cd03256 | 241 | cd03256, ABC_PhnC_transporter, ATP-binding cassett | 1e-34 | |
| COG1117 | 253 | COG1117, PstB, ABC-type phosphate transport system | 2e-34 | |
| TIGR01186 | 363 | TIGR01186, proV, glycine betaine/L-proline transpo | 2e-34 | |
| TIGR03608 | 206 | TIGR03608, L_ocin_972_ABC, putative bacteriocin ex | 2e-34 | |
| cd03292 | 214 | cd03292, ABC_FtsE_transporter, ATP-binding cassett | 3e-34 | |
| COG3638 | 258 | COG3638, COG3638, ABC-type phosphate/phosphonate t | 4e-34 | |
| PRK14240 | 250 | PRK14240, PRK14240, phosphate transporter ATP-bind | 6e-34 | |
| COG4608 | 268 | COG4608, AppF, ABC-type oligopeptide transport sys | 7e-34 | |
| COG1124 | 252 | COG1124, DppF, ABC-type dipeptide/oligopeptide/nic | 1e-33 | |
| cd03256 | 241 | cd03256, ABC_PhnC_transporter, ATP-binding cassett | 1e-33 | |
| COG3638 | 258 | COG3638, COG3638, ABC-type phosphate/phosphonate t | 1e-33 | |
| cd03235 | 213 | cd03235, ABC_Metallic_Cations, ATP-binding cassett | 2e-33 | |
| PRK13632 | 271 | PRK13632, cbiO, cobalt transporter ATP-binding sub | 3e-33 | |
| COG1118 | 345 | COG1118, CysA, ABC-type sulfate/molybdate transpor | 3e-33 | |
| cd03301 | 213 | cd03301, ABC_MalK_N, The N-terminal ATPase domain | 4e-33 | |
| PRK11153 | 343 | PRK11153, metN, DL-methionine transporter ATP-bind | 5e-33 | |
| COG4175 | 386 | COG4175, ProV, ABC-type proline/glycine betaine tr | 5e-33 | |
| TIGR01186 | 363 | TIGR01186, proV, glycine betaine/L-proline transpo | 6e-33 | |
| PRK13637 | 287 | PRK13637, cbiO, cobalt transporter ATP-binding sub | 7e-33 | |
| cd03213 | 194 | cd03213, ABCG_EPDR, Eye pigment and drug resistanc | 1e-32 | |
| PRK14262 | 250 | PRK14262, PRK14262, phosphate ABC transporter ATP- | 2e-32 | |
| PRK09452 | 375 | PRK09452, potA, putrescine/spermidine ABC transpor | 2e-32 | |
| TIGR01187 | 325 | TIGR01187, potA, spermidine/putrescine ABC transpo | 3e-32 | |
| TIGR00968 | 237 | TIGR00968, 3a0106s01, sulfate ABC transporter, ATP | 4e-32 | |
| cd03235 | 213 | cd03235, ABC_Metallic_Cations, ATP-binding cassett | 5e-32 | |
| PRK10744 | 260 | PRK10744, pstB, phosphate transporter ATP-binding | 5e-32 | |
| COG2884 | 223 | COG2884, FtsE, Predicted ATPase involved in cell d | 7e-32 | |
| cd03263 | 220 | cd03263, ABC_subfamily_A, ATP-binding cassette dom | 7e-32 | |
| PRK13650 | 279 | PRK13650, cbiO, cobalt transporter ATP-binding sub | 8e-32 | |
| COG4608 | 268 | COG4608, AppF, ABC-type oligopeptide transport sys | 2e-31 | |
| COG3840 | 231 | COG3840, ThiQ, ABC-type thiamine transport system, | 2e-31 | |
| cd03299 | 235 | cd03299, ABC_ModC_like, ATP-binding cassette domai | 3e-31 | |
| cd03219 | 236 | cd03219, ABC_Mj1267_LivG_branched, ATP-binding cas | 5e-31 | |
| cd03300 | 232 | cd03300, ABC_PotA_N, ATP-binding cassette domain o | 6e-31 | |
| PRK13637 | 287 | PRK13637, cbiO, cobalt transporter ATP-binding sub | 6e-31 | |
| PRK13650 | 279 | PRK13650, cbiO, cobalt transporter ATP-binding sub | 8e-31 | |
| COG1118 | 345 | COG1118, CysA, ABC-type sulfate/molybdate transpor | 9e-31 | |
| PRK14240 | 250 | PRK14240, PRK14240, phosphate transporter ATP-bind | 1e-30 | |
| PRK14262 | 250 | PRK14262, PRK14262, phosphate ABC transporter ATP- | 1e-30 | |
| TIGR02314 | 343 | TIGR02314, ABC_MetN, D-methionine ABC transporter, | 1e-30 | |
| TIGR02315 | 243 | TIGR02315, ABC_phnC, phosphonate ABC transporter, | 1e-30 | |
| COG1121 | 254 | COG1121, ZnuC, ABC-type Mn/Zn transport systems, A | 2e-30 | |
| PRK14269 | 246 | PRK14269, PRK14269, phosphate ABC transporter ATP- | 2e-30 | |
| PRK14236 | 272 | PRK14236, PRK14236, phosphate transporter ATP-bind | 2e-30 | |
| cd03296 | 239 | cd03296, ABC_CysA_sulfate_importer, ATP-binding ca | 2e-30 | |
| PRK13646 | 286 | PRK13646, cbiO, cobalt transporter ATP-binding sub | 2e-30 | |
| PRK14244 | 251 | PRK14244, PRK14244, phosphate ABC transporter ATP- | 2e-30 | |
| cd03297 | 214 | cd03297, ABC_ModC_molybdenum_transporter, ATP-bind | 2e-30 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 4e-30 | |
| COG0444 | 316 | COG0444, DppD, ABC-type dipeptide/oligopeptide/nic | 4e-30 | |
| PRK14266 | 250 | PRK14266, PRK14266, phosphate ABC transporter ATP- | 5e-30 | |
| TIGR03608 | 206 | TIGR03608, L_ocin_972_ABC, putative bacteriocin ex | 6e-30 | |
| cd03301 | 213 | cd03301, ABC_MalK_N, The N-terminal ATPase domain | 7e-30 | |
| PRK13635 | 279 | PRK13635, cbiO, cobalt transporter ATP-binding sub | 8e-30 | |
| TIGR02314 | 343 | TIGR02314, ABC_MetN, D-methionine ABC transporter, | 1e-29 | |
| cd03292 | 214 | cd03292, ABC_FtsE_transporter, ATP-binding cassett | 2e-29 | |
| TIGR00968 | 237 | TIGR00968, 3a0106s01, sulfate ABC transporter, ATP | 2e-29 | |
| TIGR02315 | 243 | TIGR02315, ABC_phnC, phosphonate ABC transporter, | 2e-29 | |
| cd03296 | 239 | cd03296, ABC_CysA_sulfate_importer, ATP-binding ca | 2e-29 | |
| COG4619 | 223 | COG4619, COG4619, ABC-type uncharacterized transpo | 2e-29 | |
| TIGR01166 | 190 | TIGR01166, cbiO, cobalt transport protein ATP-bind | 2e-29 | |
| cd03264 | 211 | cd03264, ABC_drug_resistance_like, ABC-type multid | 3e-29 | |
| PRK14245 | 250 | PRK14245, PRK14245, phosphate ABC transporter ATP- | 4e-29 | |
| cd03226 | 205 | cd03226, ABC_cobalt_CbiO_domain2, Second domain of | 4e-29 | |
| TIGR02673 | 214 | TIGR02673, FtsE, cell division ATP-binding protein | 5e-29 | |
| PRK14242 | 253 | PRK14242, PRK14242, phosphate transporter ATP-bind | 5e-29 | |
| TIGR02673 | 214 | TIGR02673, FtsE, cell division ATP-binding protein | 9e-29 | |
| PRK14244 | 251 | PRK14244, PRK14244, phosphate ABC transporter ATP- | 1e-28 | |
| PTZ00243 | 1560 | PTZ00243, PTZ00243, ABC transporter; Provisional | 1e-28 | |
| PRK10744 | 260 | PRK10744, pstB, phosphate transporter ATP-binding | 2e-28 | |
| cd03263 | 220 | cd03263, ABC_subfamily_A, ATP-binding cassette dom | 2e-28 | |
| PRK09493 | 240 | PRK09493, glnQ, glutamine ABC transporter ATP-bind | 2e-28 | |
| TIGR01277 | 213 | TIGR01277, thiQ, thiamine ABC transporter, ATP-bin | 2e-28 | |
| PRK13639 | 275 | PRK13639, cbiO, cobalt transporter ATP-binding sub | 2e-28 | |
| cd03297 | 214 | cd03297, ABC_ModC_molybdenum_transporter, ATP-bind | 3e-28 | |
| cd03264 | 211 | cd03264, ABC_drug_resistance_like, ABC-type multid | 3e-28 | |
| cd03226 | 205 | cd03226, ABC_cobalt_CbiO_domain2, Second domain of | 3e-28 | |
| PRK09493 | 240 | PRK09493, glnQ, glutamine ABC transporter ATP-bind | 3e-28 | |
| COG4619 | 223 | COG4619, COG4619, ABC-type uncharacterized transpo | 4e-28 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 6e-28 | |
| cd03298 | 211 | cd03298, ABC_ThiQ_thiamine_transporter, ATP-bindin | 6e-28 | |
| COG4555 | 245 | COG4555, NatA, ABC-type Na+ transport system, ATPa | 6e-28 | |
| TIGR03265 | 353 | TIGR03265, PhnT2, putative 2-aminoethylphosphonate | 7e-28 | |
| pfam00005 | 119 | pfam00005, ABC_tran, ABC transporter | 7e-28 | |
| PRK10070 | 400 | PRK10070, PRK10070, glycine betaine transporter AT | 7e-28 | |
| PRK14241 | 258 | PRK14241, PRK14241, phosphate transporter ATP-bind | 9e-28 | |
| PRK14253 | 249 | PRK14253, PRK14253, phosphate ABC transporter ATP- | 9e-28 | |
| TIGR03864 | 236 | TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-bindi | 9e-28 | |
| PRK14266 | 250 | PRK14266, PRK14266, phosphate ABC transporter ATP- | 1e-27 | |
| TIGR01166 | 190 | TIGR01166, cbiO, cobalt transport protein ATP-bind | 1e-27 | |
| PRK13648 | 269 | PRK13648, cbiO, cobalt transporter ATP-binding sub | 1e-27 | |
| PRK13648 | 269 | PRK13648, cbiO, cobalt transporter ATP-binding sub | 1e-27 | |
| PRK14259 | 269 | PRK14259, PRK14259, phosphate ABC transporter ATP- | 1e-27 | |
| PRK13642 | 277 | PRK13642, cbiO, cobalt transporter ATP-binding sub | 2e-27 | |
| PRK14235 | 267 | PRK14235, PRK14235, phosphate transporter ATP-bind | 2e-27 | |
| cd03289 | 275 | cd03289, ABCC_CFTR2, ATP-binding cassette domain 2 | 2e-27 | |
| cd03290 | 218 | cd03290, ABCC_SUR1_N, ATP-binding cassette domain | 2e-27 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 3e-27 | |
| PRK14239 | 252 | PRK14239, PRK14239, phosphate transporter ATP-bind | 3e-27 | |
| PRK14270 | 251 | PRK14270, PRK14270, phosphate ABC transporter ATP- | 3e-27 | |
| COG3845 | 501 | COG3845, COG3845, ABC-type uncharacterized transpo | 4e-27 | |
| pfam00005 | 119 | pfam00005, ABC_tran, ABC transporter | 5e-27 | |
| cd03289 | 275 | cd03289, ABCC_CFTR2, ATP-binding cassette domain 2 | 5e-27 | |
| PRK14255 | 252 | PRK14255, PRK14255, phosphate ABC transporter ATP- | 5e-27 | |
| PRK14259 | 269 | PRK14259, PRK14259, phosphate ABC transporter ATP- | 6e-27 | |
| COG4525 | 259 | COG4525, TauB, ABC-type taurine transport system, | 6e-27 | |
| TIGR02211 | 221 | TIGR02211, LolD_lipo_ex, lipoprotein releasing sys | 7e-27 | |
| PRK14273 | 254 | PRK14273, PRK14273, phosphate ABC transporter ATP- | 8e-27 | |
| cd03224 | 222 | cd03224, ABC_TM1139_LivF_branched, ATP-binding cas | 8e-27 | |
| PRK13635 | 279 | PRK13635, cbiO, cobalt transporter ATP-binding sub | 9e-27 | |
| cd03224 | 222 | cd03224, ABC_TM1139_LivF_branched, ATP-binding cas | 9e-27 | |
| PRK10247 | 225 | PRK10247, PRK10247, putative ABC transporter ATP-b | 9e-27 | |
| cd03216 | 163 | cd03216, ABC_Carb_Monos_I, First domain of the ATP | 9e-27 | |
| COG4555 | 245 | COG4555, NatA, ABC-type Na+ transport system, ATPa | 1e-26 | |
| PRK14272 | 252 | PRK14272, PRK14272, phosphate ABC transporter ATP- | 1e-26 | |
| PRK14236 | 272 | PRK14236, PRK14236, phosphate transporter ATP-bind | 2e-26 | |
| PRK14245 | 250 | PRK14245, PRK14245, phosphate ABC transporter ATP- | 2e-26 | |
| TIGR03864 | 236 | TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-bindi | 2e-26 | |
| TIGR02211 | 221 | TIGR02211, LolD_lipo_ex, lipoprotein releasing sys | 2e-26 | |
| PRK14254 | 285 | PRK14254, PRK14254, phosphate ABC transporter ATP- | 2e-26 | |
| PLN03130 | 1622 | PLN03130, PLN03130, ABC transporter C family membe | 3e-26 | |
| PRK10070 | 400 | PRK10070, PRK10070, glycine betaine transporter AT | 3e-26 | |
| PRK14235 | 267 | PRK14235, PRK14235, phosphate transporter ATP-bind | 3e-26 | |
| TIGR00957 | 1522 | TIGR00957, MRP_assoc_pro, multi drug resistance-as | 4e-26 | |
| PRK13649 | 280 | PRK13649, cbiO, cobalt transporter ATP-binding sub | 4e-26 | |
| PRK09452 | 375 | PRK09452, potA, putrescine/spermidine ABC transpor | 5e-26 | |
| PRK14238 | 271 | PRK14238, PRK14238, phosphate transporter ATP-bind | 5e-26 | |
| TIGR03258 | 362 | TIGR03258, PhnT, 2-aminoethylphosphonate ABC trans | 5e-26 | |
| PRK14270 | 251 | PRK14270, PRK14270, phosphate ABC transporter ATP- | 6e-26 | |
| COG4598 | 256 | COG4598, HisP, ABC-type histidine transport system | 6e-26 | |
| PRK14248 | 268 | PRK14248, PRK14248, phosphate ABC transporter ATP- | 6e-26 | |
| PRK14237 | 267 | PRK14237, PRK14237, phosphate transporter ATP-bind | 6e-26 | |
| TIGR01271 | 1490 | TIGR01271, CFTR_protein, cystic fibrosis transmemb | 6e-26 | |
| PRK11432 | 351 | PRK11432, fbpC, ferric transporter ATP-binding sub | 6e-26 | |
| PRK13652 | 277 | PRK13652, cbiO, cobalt transporter ATP-binding sub | 6e-26 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 8e-26 | |
| COG3840 | 231 | COG3840, ThiQ, ABC-type thiamine transport system, | 1e-25 | |
| PRK13639 | 275 | PRK13639, cbiO, cobalt transporter ATP-binding sub | 1e-25 | |
| PRK11432 | 351 | PRK11432, fbpC, ferric transporter ATP-binding sub | 1e-25 | |
| PRK13640 | 282 | PRK13640, cbiO, cobalt transporter ATP-binding sub | 1e-25 | |
| PRK14261 | 253 | PRK14261, PRK14261, phosphate ABC transporter ATP- | 1e-25 | |
| cd03291 | 282 | cd03291, ABCC_CFTR1, ATP-binding cassette domain o | 1e-25 | |
| PRK14264 | 305 | PRK14264, PRK14264, phosphate ABC transporter ATP- | 1e-25 | |
| PRK13633 | 280 | PRK13633, PRK13633, cobalt transporter ATP-binding | 1e-25 | |
| PRK14249 | 251 | PRK14249, PRK14249, phosphate ABC transporter ATP- | 1e-25 | |
| PRK14246 | 257 | PRK14246, PRK14246, phosphate ABC transporter ATP- | 1e-25 | |
| PRK13646 | 286 | PRK13646, cbiO, cobalt transporter ATP-binding sub | 2e-25 | |
| TIGR03265 | 353 | TIGR03265, PhnT2, putative 2-aminoethylphosphonate | 2e-25 | |
| PRK11607 | 377 | PRK11607, potG, putrescine transporter ATP-binding | 2e-25 | |
| cd03268 | 208 | cd03268, ABC_BcrA_bacitracin_resist, ATP-binding c | 2e-25 | |
| PRK13641 | 287 | PRK13641, cbiO, cobalt transporter ATP-binding sub | 2e-25 | |
| TIGR00957 | 1522 | TIGR00957, MRP_assoc_pro, multi drug resistance-as | 3e-25 | |
| PRK10247 | 225 | PRK10247, PRK10247, putative ABC transporter ATP-b | 3e-25 | |
| cd03269 | 210 | cd03269, ABC_putative_ATPase, ATP-binding cassette | 3e-25 | |
| TIGR03005 | 252 | TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine AB | 3e-25 | |
| COG0411 | 250 | COG0411, LivG, ABC-type branched-chain amino acid | 3e-25 | |
| PRK11264 | 250 | PRK11264, PRK11264, putative amino-acid ABC transp | 3e-25 | |
| cd00267 | 157 | cd00267, ABC_ATPase, ATP-binding cassette transpor | 4e-25 | |
| PTZ00243 | 1560 | PTZ00243, PTZ00243, ABC transporter; Provisional | 4e-25 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 5e-25 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 5e-25 | |
| PRK14243 | 264 | PRK14243, PRK14243, phosphate transporter ATP-bind | 5e-25 | |
| PRK13644 | 274 | PRK13644, cbiO, cobalt transporter ATP-binding sub | 5e-25 | |
| TIGR03005 | 252 | TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine AB | 6e-25 | |
| PRK14257 | 329 | PRK14257, PRK14257, phosphate ABC transporter ATP- | 6e-25 | |
| TIGR01271 | 1490 | TIGR01271, CFTR_protein, cystic fibrosis transmemb | 7e-25 | |
| PRK14249 | 251 | PRK14249, PRK14249, phosphate ABC transporter ATP- | 1e-24 | |
| PRK14246 | 257 | PRK14246, PRK14246, phosphate ABC transporter ATP- | 1e-24 | |
| PRK13647 | 274 | PRK13647, cbiO, cobalt transporter ATP-binding sub | 1e-24 | |
| PRK13634 | 290 | PRK13634, cbiO, cobalt transporter ATP-binding sub | 1e-24 | |
| PRK10851 | 353 | PRK10851, PRK10851, sulfate/thiosulfate transporte | 1e-24 | |
| PRK14251 | 251 | PRK14251, PRK14251, phosphate ABC transporter ATP- | 1e-24 | |
| TIGR01188 | 302 | TIGR01188, drrA, daunorubicin resistance ABC trans | 1e-24 | |
| PRK14269 | 246 | PRK14269, PRK14269, phosphate ABC transporter ATP- | 2e-24 | |
| TIGR01277 | 213 | TIGR01277, thiQ, thiamine ABC transporter, ATP-bin | 2e-24 | |
| PRK14253 | 249 | PRK14253, PRK14253, phosphate ABC transporter ATP- | 2e-24 | |
| PRK14261 | 253 | PRK14261, PRK14261, phosphate ABC transporter ATP- | 2e-24 | |
| cd03291 | 282 | cd03291, ABCC_CFTR1, ATP-binding cassette domain o | 2e-24 | |
| PRK13633 | 280 | PRK13633, PRK13633, cobalt transporter ATP-binding | 2e-24 | |
| PRK14257 | 329 | PRK14257, PRK14257, phosphate ABC transporter ATP- | 2e-24 | |
| COG4148 | 352 | COG4148, ModC, ABC-type molybdate transport system | 4e-24 | |
| PRK10771 | 232 | PRK10771, thiQ, thiamine transporter ATP-binding s | 4e-24 | |
| PRK14260 | 259 | PRK14260, PRK14260, phosphate ABC transporter ATP- | 5e-24 | |
| PRK11308 | 327 | PRK11308, dppF, dipeptide transporter ATP-binding | 5e-24 | |
| PRK11000 | 369 | PRK11000, PRK11000, maltose/maltodextrin transport | 5e-24 | |
| PRK14265 | 274 | PRK14265, PRK14265, phosphate ABC transporter ATP- | 6e-24 | |
| COG0410 | 237 | COG0410, LivF, ABC-type branched-chain amino acid | 6e-24 | |
| PRK11124 | 242 | PRK11124, artP, arginine transporter ATP-binding s | 6e-24 | |
| TIGR01187 | 325 | TIGR01187, potA, spermidine/putrescine ABC transpo | 8e-24 | |
| cd03219 | 236 | cd03219, ABC_Mj1267_LivG_branched, ATP-binding cas | 8e-24 | |
| TIGR01271 | 1490 | TIGR01271, CFTR_protein, cystic fibrosis transmemb | 9e-24 | |
| COG4161 | 242 | COG4161, ArtP, ABC-type arginine transport system, | 9e-24 | |
| PRK13645 | 289 | PRK13645, cbiO, cobalt transporter ATP-binding sub | 9e-24 | |
| PRK14241 | 258 | PRK14241, PRK14241, phosphate transporter ATP-bind | 1e-23 | |
| PRK14272 | 252 | PRK14272, PRK14272, phosphate ABC transporter ATP- | 1e-23 | |
| PRK14238 | 271 | PRK14238, PRK14238, phosphate transporter ATP-bind | 1e-23 | |
| COG4598 | 256 | COG4598, HisP, ABC-type histidine transport system | 1e-23 | |
| PRK14237 | 267 | PRK14237, PRK14237, phosphate transporter ATP-bind | 1e-23 | |
| TIGR01271 | 1490 | TIGR01271, CFTR_protein, cystic fibrosis transmemb | 1e-23 | |
| COG0410 | 237 | COG0410, LivF, ABC-type branched-chain amino acid | 1e-23 | |
| TIGR02142 | 354 | TIGR02142, modC_ABC, molybdenum ABC transporter, A | 1e-23 | |
| PRK14256 | 252 | PRK14256, PRK14256, phosphate ABC transporter ATP- | 1e-23 | |
| cd03213 | 194 | cd03213, ABCG_EPDR, Eye pigment and drug resistanc | 2e-23 | |
| COG3845 | 501 | COG3845, COG3845, ABC-type uncharacterized transpo | 2e-23 | |
| PRK13634 | 290 | PRK13634, cbiO, cobalt transporter ATP-binding sub | 2e-23 | |
| PRK14239 | 252 | PRK14239, PRK14239, phosphate transporter ATP-bind | 3e-23 | |
| PRK14256 | 252 | PRK14256, PRK14256, phosphate ABC transporter ATP- | 3e-23 | |
| TIGR02770 | 230 | TIGR02770, nickel_nikD, nickel import ATP-binding | 3e-23 | |
| PRK14274 | 259 | PRK14274, PRK14274, phosphate ABC transporter ATP- | 3e-23 | |
| PRK14275 | 286 | PRK14275, PRK14275, phosphate ABC transporter ATP- | 3e-23 | |
| COG0411 | 250 | COG0411, LivG, ABC-type branched-chain amino acid | 4e-23 | |
| PRK14267 | 253 | PRK14267, PRK14267, phosphate ABC transporter ATP- | 4e-23 | |
| cd03216 | 163 | cd03216, ABC_Carb_Monos_I, First domain of the ATP | 5e-23 | |
| PRK13652 | 277 | PRK13652, cbiO, cobalt transporter ATP-binding sub | 5e-23 | |
| PRK11308 | 327 | PRK11308, dppF, dipeptide transporter ATP-binding | 5e-23 | |
| PRK14268 | 258 | PRK14268, PRK14268, phosphate ABC transporter ATP- | 5e-23 | |
| PLN03130 | 1622 | PLN03130, PLN03130, ABC transporter C family membe | 6e-23 | |
| PRK14255 | 252 | PRK14255, PRK14255, phosphate ABC transporter ATP- | 6e-23 | |
| PRK13647 | 274 | PRK13647, cbiO, cobalt transporter ATP-binding sub | 6e-23 | |
| PRK10619 | 257 | PRK10619, PRK10619, histidine/lysine/arginine/orni | 6e-23 | |
| TIGR02982 | 220 | TIGR02982, heterocyst_DevA, ABC exporter ATP-bindi | 7e-23 | |
| PTZ00243 | 1560 | PTZ00243, PTZ00243, ABC transporter; Provisional | 8e-23 | |
| COG1101 | 263 | COG1101, PhnK, ABC-type uncharacterized transport | 8e-23 | |
| PRK11231 | 255 | PRK11231, fecE, iron-dicitrate transporter ATP-bin | 8e-23 | |
| PRK14243 | 264 | PRK14243, PRK14243, phosphate transporter ATP-bind | 9e-23 | |
| COG4161 | 242 | COG4161, ArtP, ABC-type arginine transport system, | 9e-23 | |
| COG1119 | 257 | COG1119, ModF, ABC-type molybdenum transport syste | 9e-23 | |
| pfam00664 | 274 | pfam00664, ABC_membrane, ABC transporter transmemb | 1e-22 | |
| PRK14275 | 286 | PRK14275, PRK14275, phosphate ABC transporter ATP- | 1e-22 | |
| COG4604 | 252 | COG4604, CeuD, ABC-type enterochelin transport sys | 2e-22 | |
| TIGR03873 | 256 | TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC tra | 2e-22 | |
| PRK13636 | 283 | PRK13636, cbiO, cobalt transporter ATP-binding sub | 2e-22 | |
| PTZ00243 | 1560 | PTZ00243, PTZ00243, ABC transporter; Provisional | 3e-22 | |
| PRK14254 | 285 | PRK14254, PRK14254, phosphate ABC transporter ATP- | 3e-22 | |
| PRK11264 | 250 | PRK11264, PRK11264, putative amino-acid ABC transp | 3e-22 | |
| PRK14247 | 250 | PRK14247, PRK14247, phosphate ABC transporter ATP- | 3e-22 | |
| PRK14247 | 250 | PRK14247, PRK14247, phosphate ABC transporter ATP- | 3e-22 | |
| cd03220 | 224 | cd03220, ABC_KpsT_Wzt, ATP-binding cassette compon | 3e-22 | |
| PRK13649 | 280 | PRK13649, cbiO, cobalt transporter ATP-binding sub | 4e-22 | |
| PRK14251 | 251 | PRK14251, PRK14251, phosphate ABC transporter ATP- | 4e-22 | |
| PRK14248 | 268 | PRK14248, PRK14248, phosphate ABC transporter ATP- | 5e-22 | |
| TIGR02142 | 354 | TIGR02142, modC_ABC, molybdenum ABC transporter, A | 5e-22 | |
| COG0396 | 251 | COG0396, sufC, Cysteine desulfurase activator ATPa | 6e-22 | |
| cd03266 | 218 | cd03266, ABC_NatA_sodium_exporter, ATP-binding cas | 6e-22 | |
| PRK13640 | 282 | PRK13640, cbiO, cobalt transporter ATP-binding sub | 7e-22 | |
| TIGR01188 | 302 | TIGR01188, drrA, daunorubicin resistance ABC trans | 8e-22 | |
| PRK10535 | 648 | PRK10535, PRK10535, macrolide transporter ATP-bind | 8e-22 | |
| PRK13631 | 320 | PRK13631, cbiO, cobalt transporter ATP-binding sub | 8e-22 | |
| TIGR02769 | 265 | TIGR02769, nickel_nikE, nickel import ATP-binding | 9e-22 | |
| COG4181 | 228 | COG4181, COG4181, Predicted ABC-type transport sys | 9e-22 | |
| TIGR03258 | 362 | TIGR03258, PhnT, 2-aminoethylphosphonate ABC trans | 1e-21 | |
| COG4148 | 352 | COG4148, ModC, ABC-type molybdate transport system | 1e-21 | |
| PRK14274 | 259 | PRK14274, PRK14274, phosphate ABC transporter ATP- | 1e-21 | |
| PRK14252 | 265 | PRK14252, PRK14252, phosphate ABC transporter ATP- | 1e-21 | |
| PRK14271 | 276 | PRK14271, PRK14271, phosphate ABC transporter ATP- | 1e-21 | |
| cd03265 | 220 | cd03265, ABC_DrrA, Daunorubicin/doxorubicin resist | 1e-21 | |
| TIGR01184 | 230 | TIGR01184, ntrCD, nitrate transport ATP-binding su | 1e-21 | |
| cd03298 | 211 | cd03298, ABC_ThiQ_thiamine_transporter, ATP-bindin | 2e-21 | |
| PRK14268 | 258 | PRK14268, PRK14268, phosphate ABC transporter ATP- | 2e-21 | |
| TIGR02982 | 220 | TIGR02982, heterocyst_DevA, ABC exporter ATP-bindi | 2e-21 | |
| PRK11231 | 255 | PRK11231, fecE, iron-dicitrate transporter ATP-bin | 2e-21 | |
| PRK14258 | 261 | PRK14258, PRK14258, phosphate ABC transporter ATP- | 2e-21 | |
| PRK10575 | 265 | PRK10575, PRK10575, iron-hydroxamate transporter A | 2e-21 | |
| PRK13642 | 277 | PRK13642, cbiO, cobalt transporter ATP-binding sub | 3e-21 | |
| COG4525 | 259 | COG4525, TauB, ABC-type taurine transport system, | 3e-21 | |
| cd03269 | 210 | cd03269, ABC_putative_ATPase, ATP-binding cassette | 3e-21 | |
| PRK14260 | 259 | PRK14260, PRK14260, phosphate ABC transporter ATP- | 3e-21 | |
| PRK11124 | 242 | PRK11124, artP, arginine transporter ATP-binding s | 3e-21 | |
| COG4604 | 252 | COG4604, CeuD, ABC-type enterochelin transport sys | 3e-21 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 3e-21 | |
| PRK11607 | 377 | PRK11607, potG, putrescine transporter ATP-binding | 4e-21 | |
| TIGR02770 | 230 | TIGR02770, nickel_nikD, nickel import ATP-binding | 4e-21 | |
| TIGR03873 | 256 | TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC tra | 4e-21 | |
| cd03265 | 220 | cd03265, ABC_DrrA, Daunorubicin/doxorubicin resist | 4e-21 | |
| PRK13548 | 258 | PRK13548, hmuV, hemin importer ATP-binding subunit | 4e-21 | |
| COG4181 | 228 | COG4181, COG4181, Predicted ABC-type transport sys | 5e-21 | |
| PRK14258 | 261 | PRK14258, PRK14258, phosphate ABC transporter ATP- | 5e-21 | |
| PRK14263 | 261 | PRK14263, PRK14263, phosphate ABC transporter ATP- | 5e-21 | |
| COG1134 | 249 | COG1134, TagH, ABC-type polysaccharide/polyol phos | 5e-21 | |
| PRK10851 | 353 | PRK10851, PRK10851, sulfate/thiosulfate transporte | 7e-21 | |
| TIGR03740 | 223 | TIGR03740, galliderm_ABC, gallidermin-class lantib | 7e-21 | |
| cd03266 | 218 | cd03266, ABC_NatA_sodium_exporter, ATP-binding cas | 8e-21 | |
| COG4559 | 259 | COG4559, COG4559, ABC-type hemin transport system, | 8e-21 | |
| PRK14265 | 274 | PRK14265, PRK14265, phosphate ABC transporter ATP- | 1e-20 | |
| COG1119 | 257 | COG1119, ModF, ABC-type molybdenum transport syste | 1e-20 | |
| TIGR02769 | 265 | TIGR02769, nickel_nikE, nickel import ATP-binding | 1e-20 | |
| PRK14271 | 276 | PRK14271, PRK14271, phosphate ABC transporter ATP- | 1e-20 | |
| cd03218 | 232 | cd03218, ABC_YhbG, ATP-binding cassette component | 1e-20 | |
| COG4167 | 267 | COG4167, SapF, ABC-type antimicrobial peptide tran | 1e-20 | |
| cd03290 | 218 | cd03290, ABCC_SUR1_N, ATP-binding cassette domain | 2e-20 | |
| PRK14273 | 254 | PRK14273, PRK14273, phosphate ABC transporter ATP- | 2e-20 | |
| PRK10619 | 257 | PRK10619, PRK10619, histidine/lysine/arginine/orni | 2e-20 | |
| COG0396 | 251 | COG0396, sufC, Cysteine desulfurase activator ATPa | 2e-20 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 2e-20 | |
| PRK13636 | 283 | PRK13636, cbiO, cobalt transporter ATP-binding sub | 3e-20 | |
| PRK14263 | 261 | PRK14263, PRK14263, phosphate ABC transporter ATP- | 3e-20 | |
| PRK14242 | 253 | PRK14242, PRK14242, phosphate transporter ATP-bind | 4e-20 | |
| TIGR03410 | 230 | TIGR03410, urea_trans_UrtE, urea ABC transporter, | 4e-20 | |
| cd03217 | 200 | cd03217, ABC_FeS_Assembly, ABC-type transport syst | 4e-20 | |
| COG4138 | 248 | COG4138, BtuD, ABC-type cobalamin transport system | 4e-20 | |
| PRK14264 | 305 | PRK14264, PRK14264, phosphate ABC transporter ATP- | 5e-20 | |
| cd03268 | 208 | cd03268, ABC_BcrA_bacitracin_resist, ATP-binding c | 5e-20 | |
| PRK03695 | 248 | PRK03695, PRK03695, vitamin B12-transporter ATPase | 5e-20 | |
| cd03234 | 226 | cd03234, ABCG_White, White pigment protein homolog | 6e-20 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 8e-20 | |
| PRK14267 | 253 | PRK14267, PRK14267, phosphate ABC transporter ATP- | 9e-20 | |
| COG4136 | 213 | COG4136, COG4136, ABC-type uncharacterized transpo | 9e-20 | |
| PRK13643 | 288 | PRK13643, cbiO, cobalt transporter ATP-binding sub | 9e-20 | |
| PRK10771 | 232 | PRK10771, thiQ, thiamine transporter ATP-binding s | 1e-19 | |
| COG1134 | 249 | COG1134, TagH, ABC-type polysaccharide/polyol phos | 1e-19 | |
| cd03218 | 232 | cd03218, ABC_YhbG, ATP-binding cassette component | 1e-19 | |
| PRK15134 | 529 | PRK15134, PRK15134, microcin C ABC transporter ATP | 1e-19 | |
| TIGR03269 | 520 | TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc | 1e-19 | |
| TIGR00955 | 617 | TIGR00955, 3a01204, The Eye Pigment Precursor Tran | 1e-19 | |
| PRK11248 | 255 | PRK11248, tauB, taurine transporter ATP-binding su | 1e-19 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 2e-19 | |
| cd03220 | 224 | cd03220, ABC_KpsT_Wzt, ATP-binding cassette compon | 2e-19 | |
| cd03217 | 200 | cd03217, ABC_FeS_Assembly, ABC-type transport syst | 2e-19 | |
| PRK11248 | 255 | PRK11248, tauB, taurine transporter ATP-binding su | 2e-19 | |
| COG1137 | 243 | COG1137, YhbG, ABC-type (unclassified) transport s | 2e-19 | |
| PRK13641 | 287 | PRK13641, cbiO, cobalt transporter ATP-binding sub | 3e-19 | |
| PRK13644 | 274 | PRK13644, cbiO, cobalt transporter ATP-binding sub | 3e-19 | |
| COG1101 | 263 | COG1101, PhnK, ABC-type uncharacterized transport | 3e-19 | |
| PRK13548 | 258 | PRK13548, hmuV, hemin importer ATP-binding subunit | 3e-19 | |
| PRK13536 | 340 | PRK13536, PRK13536, nodulation factor exporter sub | 3e-19 | |
| PRK14252 | 265 | PRK14252, PRK14252, phosphate ABC transporter ATP- | 4e-19 | |
| PRK15134 | 529 | PRK15134, PRK15134, microcin C ABC transporter ATP | 4e-19 | |
| PRK13651 | 305 | PRK13651, PRK13651, cobalt transporter ATP-binding | 6e-19 | |
| PRK11831 | 269 | PRK11831, PRK11831, putative ABC transporter ATP-b | 6e-19 | |
| PRK09536 | 402 | PRK09536, btuD, corrinoid ABC transporter ATPase; | 6e-19 | |
| PRK10419 | 268 | PRK10419, nikE, nickel transporter ATP-binding pro | 6e-19 | |
| PRK13536 | 340 | PRK13536, PRK13536, nodulation factor exporter sub | 8e-19 | |
| COG4167 | 267 | COG4167, SapF, ABC-type antimicrobial peptide tran | 9e-19 | |
| PRK11000 | 369 | PRK11000, PRK11000, maltose/maltodextrin transport | 1e-18 | |
| PRK13631 | 320 | PRK13631, cbiO, cobalt transporter ATP-binding sub | 1e-18 | |
| COG4559 | 259 | COG4559, COG4559, ABC-type hemin transport system, | 1e-18 | |
| TIGR03269 | 520 | TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc | 1e-18 | |
| TIGR01288 | 303 | TIGR01288, nodI, ATP-binding ABC transporter famil | 1e-18 | |
| COG4586 | 325 | COG4586, COG4586, ABC-type uncharacterized transpo | 1e-18 | |
| TIGR01194 | 555 | TIGR01194, cyc_pep_trnsptr, cyclic peptide transpo | 1e-18 | |
| COG4178 | 604 | COG4178, COG4178, ABC-type uncharacterized transpo | 1e-18 | |
| PRK10261 | 623 | PRK10261, PRK10261, glutathione transporter ATP-bi | 1e-18 | |
| PRK10575 | 265 | PRK10575, PRK10575, iron-hydroxamate transporter A | 3e-18 | |
| PRK10261 | 623 | PRK10261, PRK10261, glutathione transporter ATP-bi | 3e-18 | |
| PRK11144 | 352 | PRK11144, modC, molybdate transporter ATP-binding | 3e-18 | |
| PRK15112 | 267 | PRK15112, PRK15112, antimicrobial peptide ABC syst | 3e-18 | |
| PRK10895 | 241 | PRK10895, PRK10895, lipopolysaccharide ABC transpo | 3e-18 | |
| PRK10535 | 648 | PRK10535, PRK10535, macrolide transporter ATP-bind | 4e-18 | |
| TIGR01184 | 230 | TIGR01184, ntrCD, nitrate transport ATP-binding su | 4e-18 | |
| COG1137 | 243 | COG1137, YhbG, ABC-type (unclassified) transport s | 4e-18 | |
| PRK10419 | 268 | PRK10419, nikE, nickel transporter ATP-binding pro | 4e-18 | |
| PRK10908 | 222 | PRK10908, PRK10908, cell division protein FtsE; Pr | 4e-18 | |
| PRK10908 | 222 | PRK10908, PRK10908, cell division protein FtsE; Pr | 4e-18 | |
| TIGR02323 | 253 | TIGR02323, CP_lyasePhnK, phosphonate C-P lyase sys | 4e-18 | |
| PRK13537 | 306 | PRK13537, PRK13537, nodulation ABC transporter Nod | 4e-18 | |
| PRK09473 | 330 | PRK09473, oppD, oligopeptide transporter ATP-bindi | 4e-18 | |
| PRK11247 | 257 | PRK11247, ssuB, aliphatic sulfonates transport ATP | 5e-18 | |
| PRK13539 | 207 | PRK13539, PRK13539, cytochrome c biogenesis protei | 5e-18 | |
| PRK11629 | 233 | PRK11629, lolD, lipoprotein transporter ATP-bindin | 5e-18 | |
| COG4136 | 213 | COG4136, COG4136, ABC-type uncharacterized transpo | 6e-18 | |
| TIGR01288 | 303 | TIGR01288, nodI, ATP-binding ABC transporter famil | 6e-18 | |
| PRK13539 | 207 | PRK13539, PRK13539, cytochrome c biogenesis protei | 7e-18 | |
| PRK10253 | 265 | PRK10253, PRK10253, iron-enterobactin transporter | 7e-18 | |
| PRK13651 | 305 | PRK13651, PRK13651, cobalt transporter ATP-binding | 8e-18 | |
| TIGR01257 | 2272 | TIGR01257, rim_protein, retinal-specific rim ABC t | 8e-18 | |
| TIGR03740 | 223 | TIGR03740, galliderm_ABC, gallidermin-class lantib | 1e-17 | |
| TIGR03410 | 230 | TIGR03410, urea_trans_UrtE, urea ABC transporter, | 1e-17 | |
| PRK10261 | 623 | PRK10261, PRK10261, glutathione transporter ATP-bi | 1e-17 | |
| PRK11247 | 257 | PRK11247, ssuB, aliphatic sulfonates transport ATP | 1e-17 | |
| TIGR03771 | 223 | TIGR03771, anch_rpt_ABC, anchored repeat-type ABC | 1e-17 | |
| cd03234 | 226 | cd03234, ABCG_White, White pigment protein homolog | 2e-17 | |
| PRK13643 | 288 | PRK13643, cbiO, cobalt transporter ATP-binding sub | 2e-17 | |
| PRK15134 | 529 | PRK15134, PRK15134, microcin C ABC transporter ATP | 2e-17 | |
| PRK09536 | 402 | PRK09536, btuD, corrinoid ABC transporter ATPase; | 2e-17 | |
| PRK11650 | 356 | PRK11650, ugpC, glycerol-3-phosphate transporter A | 2e-17 | |
| PRK15079 | 331 | PRK15079, PRK15079, oligopeptide ABC transporter A | 2e-17 | |
| TIGR02324 | 224 | TIGR02324, CP_lyasePhnL, phosphonate C-P lyase sys | 2e-17 | |
| PRK13645 | 289 | PRK13645, cbiO, cobalt transporter ATP-binding sub | 3e-17 | |
| PRK11629 | 233 | PRK11629, lolD, lipoprotein transporter ATP-bindin | 3e-17 | |
| PRK15134 | 529 | PRK15134, PRK15134, microcin C ABC transporter ATP | 4e-17 | |
| PRK10895 | 241 | PRK10895, PRK10895, lipopolysaccharide ABC transpo | 4e-17 | |
| cd03231 | 201 | cd03231, ABC_CcmA_heme_exporter, Cytochrome c biog | 6e-17 | |
| PRK13537 | 306 | PRK13537, PRK13537, nodulation ABC transporter Nod | 8e-17 | |
| cd03215 | 182 | cd03215, ABC_Carb_Monos_II, Second domain of the A | 9e-17 | |
| TIGR03269 | 520 | TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc | 1e-16 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 2e-16 | |
| PRK15112 | 267 | PRK15112, PRK15112, antimicrobial peptide ABC syst | 2e-16 | |
| TIGR01978 | 243 | TIGR01978, sufC, FeS assembly ATPase SufC | 2e-16 | |
| COG4152 | 300 | COG4152, COG4152, ABC-type uncharacterized transpo | 2e-16 | |
| PLN03073 | 718 | PLN03073, PLN03073, ABC transporter F family; Prov | 2e-16 | |
| TIGR03771 | 223 | TIGR03771, anch_rpt_ABC, anchored repeat-type ABC | 3e-16 | |
| COG4152 | 300 | COG4152, COG4152, ABC-type uncharacterized transpo | 3e-16 | |
| PRK15079 | 331 | PRK15079, PRK15079, oligopeptide ABC transporter A | 4e-16 | |
| PRK11650 | 356 | PRK11650, ugpC, glycerol-3-phosphate transporter A | 5e-16 | |
| PRK11288 | 501 | PRK11288, araG, L-arabinose transporter ATP-bindin | 5e-16 | |
| COG4107 | 258 | COG4107, PhnK, ABC-type phosphonate transport syst | 5e-16 | |
| PRK15439 | 510 | PRK15439, PRK15439, autoinducer 2 ABC transporter | 6e-16 | |
| TIGR03411 | 242 | TIGR03411, urea_trans_UrtD, urea ABC transporter, | 6e-16 | |
| TIGR01189 | 198 | TIGR01189, ccmA, heme ABC exporter, ATP-binding pr | 7e-16 | |
| PRK13549 | 506 | PRK13549, PRK13549, xylose transporter ATP-binding | 8e-16 | |
| TIGR03269 | 520 | TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc | 9e-16 | |
| COG4674 | 249 | COG4674, COG4674, Uncharacterized ABC-type transpo | 9e-16 | |
| PRK13549 | 506 | PRK13549, PRK13549, xylose transporter ATP-binding | 1e-15 | |
| COG3845 | 501 | COG3845, COG3845, ABC-type uncharacterized transpo | 2e-15 | |
| PRK03695 | 248 | PRK03695, PRK03695, vitamin B12-transporter ATPase | 2e-15 | |
| TIGR01257 | 2272 | TIGR01257, rim_protein, retinal-specific rim ABC t | 2e-15 | |
| PRK11701 | 258 | PRK11701, phnK, phosphonate C-P lyase system prote | 2e-15 | |
| TIGR02324 | 224 | TIGR02324, CP_lyasePhnL, phosphonate C-P lyase sys | 3e-15 | |
| PRK10418 | 254 | PRK10418, nikD, nickel transporter ATP-binding pro | 4e-15 | |
| TIGR03415 | 382 | TIGR03415, ABC_choXWV_ATP, choline ABC transporter | 6e-15 | |
| COG4615 | 546 | COG4615, PvdE, ABC-type siderophore export system, | 7e-15 | |
| COG4178 | 604 | COG4178, COG4178, ABC-type uncharacterized transpo | 9e-15 | |
| COG4138 | 248 | COG4138, BtuD, ABC-type cobalamin transport system | 1e-14 | |
| TIGR02323 | 253 | TIGR02323, CP_lyasePhnK, phosphonate C-P lyase sys | 1e-14 | |
| COG4107 | 258 | COG4107, PhnK, ABC-type phosphonate transport syst | 1e-14 | |
| PRK11701 | 258 | PRK11701, phnK, phosphonate C-P lyase system prote | 1e-14 | |
| PRK13638 | 271 | PRK13638, cbiO, cobalt transporter ATP-binding sub | 1e-14 | |
| PRK10261 | 623 | PRK10261, PRK10261, glutathione transporter ATP-bi | 2e-14 | |
| PRK11144 | 352 | PRK11144, modC, molybdate transporter ATP-binding | 2e-14 | |
| PLN03073 | 718 | PLN03073, PLN03073, ABC transporter F family; Prov | 2e-14 | |
| TIGR01189 | 198 | TIGR01189, ccmA, heme ABC exporter, ATP-binding pr | 2e-14 | |
| cd03223 | 166 | cd03223, ABCD_peroxisomal_ALDP, ATP-binding casset | 2e-14 | |
| PLN03211 | 659 | PLN03211, PLN03211, ABC transporter G-25; Provisio | 2e-14 | |
| PRK10253 | 265 | PRK10253, PRK10253, iron-enterobactin transporter | 3e-14 | |
| cd03231 | 201 | cd03231, ABC_CcmA_heme_exporter, Cytochrome c biog | 3e-14 | |
| cd03215 | 182 | cd03215, ABC_Carb_Monos_II, Second domain of the A | 3e-14 | |
| TIGR03415 | 382 | TIGR03415, ABC_choXWV_ATP, choline ABC transporter | 3e-14 | |
| cd03223 | 166 | cd03223, ABCD_peroxisomal_ALDP, ATP-binding casset | 3e-14 | |
| COG4778 | 235 | COG4778, PhnL, ABC-type phosphonate transport syst | 3e-14 | |
| PRK09700 | 510 | PRK09700, PRK09700, D-allose transporter ATP-bindi | 3e-14 | |
| TIGR00955 | 617 | TIGR00955, 3a01204, The Eye Pigment Precursor Tran | 4e-14 | |
| PRK09544 | 251 | PRK09544, znuC, high-affinity zinc transporter ATP | 4e-14 | |
| TIGR03522 | 301 | TIGR03522, GldA_ABC_ATP, gliding motility-associat | 4e-14 | |
| COG4133 | 209 | COG4133, CcmA, ABC-type transport system involved | 4e-14 | |
| PRK11022 | 326 | PRK11022, dppD, dipeptide transporter ATP-binding | 4e-14 | |
| PRK11300 | 255 | PRK11300, livG, leucine/isoleucine/valine transpor | 7e-14 | |
| PRK10584 | 228 | PRK10584, PRK10584, putative ABC transporter ATP-b | 9e-14 | |
| PRK09473 | 330 | PRK09473, oppD, oligopeptide transporter ATP-bindi | 1e-13 | |
| PRK09544 | 251 | PRK09544, znuC, high-affinity zinc transporter ATP | 1e-13 | |
| COG4586 | 325 | COG4586, COG4586, ABC-type uncharacterized transpo | 2e-13 | |
| TIGR03719 | 552 | TIGR03719, ABC_ABC_ChvD, ATP-binding cassette prot | 2e-13 | |
| TIGR02633 | 500 | TIGR02633, xylG, D-xylose ABC transporter, ATP-bin | 2e-13 | |
| PRK13538 | 204 | PRK13538, PRK13538, cytochrome c biogenesis protei | 2e-13 | |
| PRK09984 | 262 | PRK09984, PRK09984, phosphonate/organophosphate es | 2e-13 | |
| COG2401 | 593 | COG2401, COG2401, ABC-type ATPase fused to a predi | 2e-13 | |
| COG4133 | 209 | COG4133, CcmA, ABC-type transport system involved | 3e-13 | |
| PRK09984 | 262 | PRK09984, PRK09984, phosphonate/organophosphate es | 5e-13 | |
| cd03267 | 236 | cd03267, ABC_NatA_like, ATP-binding cassette domai | 5e-13 | |
| COG4615 | 546 | COG4615, PvdE, ABC-type siderophore export system, | 6e-13 | |
| COG4674 | 249 | COG4674, COG4674, Uncharacterized ABC-type transpo | 7e-13 | |
| PRK10418 | 254 | PRK10418, nikD, nickel transporter ATP-binding pro | 8e-13 | |
| PRK11022 | 326 | PRK11022, dppD, dipeptide transporter ATP-binding | 8e-13 | |
| PRK15439 | 510 | PRK15439, PRK15439, autoinducer 2 ABC transporter | 1e-12 | |
| TIGR03411 | 242 | TIGR03411, urea_trans_UrtD, urea ABC transporter, | 1e-12 | |
| PRK11300 | 255 | PRK11300, livG, leucine/isoleucine/valine transpor | 1e-12 | |
| cd03232 | 192 | cd03232, ABCG_PDR_domain2, Second domain of the pl | 1e-12 | |
| cd03233 | 202 | cd03233, ABCG_PDR_domain1, First domain of the ple | 1e-12 | |
| TIGR01978 | 243 | TIGR01978, sufC, FeS assembly ATPase SufC | 2e-12 | |
| PRK11819 | 556 | PRK11819, PRK11819, putative ABC transporter ATP-b | 2e-12 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 3e-12 | |
| COG3845 | 501 | COG3845, COG3845, ABC-type uncharacterized transpo | 3e-12 | |
| CHL00131 | 252 | CHL00131, ycf16, sulfate ABC transporter protein; | 3e-12 | |
| cd03221 | 144 | cd03221, ABCF_EF-3, ATP-binding cassette domain of | 3e-12 | |
| PRK11614 | 237 | PRK11614, livF, leucine/isoleucine/valine transpor | 3e-12 | |
| PRK10522 | 547 | PRK10522, PRK10522, multidrug transporter membrane | 3e-12 | |
| PRK11831 | 269 | PRK11831, PRK11831, putative ABC transporter ATP-b | 4e-12 | |
| PRK13638 | 271 | PRK13638, cbiO, cobalt transporter ATP-binding sub | 4e-12 | |
| TIGR03522 | 301 | TIGR03522, GldA_ABC_ATP, gliding motility-associat | 4e-12 | |
| TIGR02633 | 500 | TIGR02633, xylG, D-xylose ABC transporter, ATP-bin | 4e-12 | |
| CHL00131 | 252 | CHL00131, ycf16, sulfate ABC transporter protein; | 4e-12 | |
| PRK15056 | 272 | PRK15056, PRK15056, manganese/iron transporter ATP | 4e-12 | |
| PRK11288 | 501 | PRK11288, araG, L-arabinose transporter ATP-bindin | 5e-12 | |
| PRK10522 | 547 | PRK10522, PRK10522, multidrug transporter membrane | 6e-12 | |
| COG4778 | 235 | COG4778, PhnL, ABC-type phosphonate transport syst | 7e-12 | |
| PRK15056 | 272 | PRK15056, PRK15056, manganese/iron transporter ATP | 7e-12 | |
| PRK10584 | 228 | PRK10584, PRK10584, putative ABC transporter ATP-b | 8e-12 | |
| cd03221 | 144 | cd03221, ABCF_EF-3, ATP-binding cassette domain of | 8e-12 | |
| COG1245 | 591 | COG1245, COG1245, Predicted ATPase, RNase L inhibi | 8e-12 | |
| PRK10762 | 501 | PRK10762, PRK10762, D-ribose transporter ATP bindi | 9e-12 | |
| PRK11614 | 237 | PRK11614, livF, leucine/isoleucine/valine transpor | 1e-11 | |
| PRK09580 | 248 | PRK09580, sufC, cysteine desulfurase ATPase compon | 2e-11 | |
| PLN03211 | 659 | PLN03211, PLN03211, ABC transporter G-25; Provisio | 3e-11 | |
| PRK09700 | 510 | PRK09700, PRK09700, D-allose transporter ATP-bindi | 3e-11 | |
| TIGR03719 | 552 | TIGR03719, ABC_ABC_ChvD, ATP-binding cassette prot | 3e-11 | |
| cd03267 | 236 | cd03267, ABC_NatA_like, ATP-binding cassette domai | 4e-11 | |
| TIGR02633 | 500 | TIGR02633, xylG, D-xylose ABC transporter, ATP-bin | 5e-11 | |
| cd03237 | 246 | cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-bin | 5e-11 | |
| PRK13543 | 214 | PRK13543, PRK13543, cytochrome c biogenesis protei | 6e-11 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 1e-10 | |
| PRK13409 | 590 | PRK13409, PRK13409, putative ATPase RIL; Provision | 1e-10 | |
| smart00382 | 148 | smart00382, AAA, ATPases associated with a variety | 2e-10 | |
| cd03233 | 202 | cd03233, ABCG_PDR_domain1, First domain of the ple | 3e-10 | |
| TIGR02633 | 500 | TIGR02633, xylG, D-xylose ABC transporter, ATP-bin | 4e-10 | |
| COG2401 | 593 | COG2401, COG2401, ABC-type ATPase fused to a predi | 4e-10 | |
| COG4170 | 330 | COG4170, SapD, ABC-type antimicrobial peptide tran | 6e-10 | |
| TIGR01194 | 555 | TIGR01194, cyc_pep_trnsptr, cyclic peptide transpo | 8e-10 | |
| cd03232 | 192 | cd03232, ABCG_PDR_domain2, Second domain of the pl | 8e-10 | |
| PRK11819 | 556 | PRK11819, PRK11819, putative ABC transporter ATP-b | 1e-09 | |
| PRK10982 | 491 | PRK10982, PRK10982, galactose/methyl galaxtoside t | 1e-09 | |
| PLN03073 | 718 | PLN03073, PLN03073, ABC transporter F family; Prov | 2e-09 | |
| TIGR03719 | 552 | TIGR03719, ABC_ABC_ChvD, ATP-binding cassette prot | 2e-09 | |
| PRK13538 | 204 | PRK13538, PRK13538, cytochrome c biogenesis protei | 2e-09 | |
| PRK10938 | 490 | PRK10938, PRK10938, putative molybdenum transport | 2e-09 | |
| PRK15093 | 330 | PRK15093, PRK15093, antimicrobial peptide ABC tran | 4e-09 | |
| PRK09700 | 510 | PRK09700, PRK09700, D-allose transporter ATP-bindi | 5e-09 | |
| PRK10762 | 501 | PRK10762, PRK10762, D-ribose transporter ATP bindi | 5e-09 | |
| PRK13547 | 272 | PRK13547, hmuV, hemin importer ATP-binding subunit | 5e-09 | |
| PRK13547 | 272 | PRK13547, hmuV, hemin importer ATP-binding subunit | 9e-09 | |
| PLN03140 | 1470 | PLN03140, PLN03140, ABC transporter G family membe | 9e-09 | |
| TIGR00954 | 659 | TIGR00954, 3a01203, Peroxysomal Fatty Acyl CoA Tra | 9e-09 | |
| cd03221 | 144 | cd03221, ABCF_EF-3, ATP-binding cassette domain of | 1e-08 | |
| PRK09580 | 248 | PRK09580, sufC, cysteine desulfurase ATPase compon | 2e-08 | |
| smart00382 | 148 | smart00382, AAA, ATPases associated with a variety | 2e-08 | |
| PRK10982 | 491 | PRK10982, PRK10982, galactose/methyl galaxtoside t | 2e-08 | |
| COG1245 | 591 | COG1245, COG1245, Predicted ATPase, RNase L inhibi | 3e-08 | |
| PRK13543 | 214 | PRK13543, PRK13543, cytochrome c biogenesis protei | 3e-08 | |
| PRK13549 | 506 | PRK13549, PRK13549, xylose transporter ATP-binding | 4e-08 | |
| PRK10982 | 491 | PRK10982, PRK10982, galactose/methyl galaxtoside t | 5e-08 | |
| TIGR00954 | 659 | TIGR00954, 3a01203, Peroxysomal Fatty Acyl CoA Tra | 5e-08 | |
| cd03236 | 255 | cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-bin | 5e-08 | |
| PRK13540 | 200 | PRK13540, PRK13540, cytochrome c biogenesis protei | 5e-08 | |
| PRK10982 | 491 | PRK10982, PRK10982, galactose/methyl galaxtoside t | 6e-08 | |
| cd03222 | 177 | cd03222, ABC_RNaseL_inhibitor, ATP-binding cassett | 6e-08 | |
| PRK09700 | 510 | PRK09700, PRK09700, D-allose transporter ATP-bindi | 7e-08 | |
| cd03221 | 144 | cd03221, ABCF_EF-3, ATP-binding cassette domain of | 7e-08 | |
| PRK13409 | 590 | PRK13409, PRK13409, putative ATPase RIL; Provision | 8e-08 | |
| PRK13409 | 590 | PRK13409, PRK13409, putative ATPase RIL; Provision | 1e-07 | |
| COG4170 | 330 | COG4170, SapD, ABC-type antimicrobial peptide tran | 2e-07 | |
| PRK10938 | 490 | PRK10938, PRK10938, putative molybdenum transport | 2e-07 | |
| PRK15093 | 330 | PRK15093, PRK15093, antimicrobial peptide ABC tran | 2e-07 | |
| PRK13546 | 264 | PRK13546, PRK13546, teichoic acids export protein | 2e-07 | |
| PRK10938 | 490 | PRK10938, PRK10938, putative molybdenum transport | 8e-07 | |
| PRK10636 | 638 | PRK10636, PRK10636, putative ABC transporter ATP-b | 1e-06 | |
| PRK13549 | 506 | PRK13549, PRK13549, xylose transporter ATP-binding | 2e-06 | |
| COG1245 | 591 | COG1245, COG1245, Predicted ATPase, RNase L inhibi | 2e-06 | |
| TIGR00956 | 1394 | TIGR00956, 3a01205, Pleiotropic Drug Resistance (P | 2e-06 | |
| PRK13545 | 549 | PRK13545, tagH, teichoic acids export protein ATP- | 2e-06 | |
| PRK13545 | 549 | PRK13545, tagH, teichoic acids export protein ATP- | 2e-06 | |
| cd03238 | 176 | cd03238, ABC_UvrA, ATP-binding cassette domain of | 3e-06 | |
| PRK15439 | 510 | PRK15439, PRK15439, autoinducer 2 ABC transporter | 4e-06 | |
| cd03236 | 255 | cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-bin | 4e-06 | |
| cd03222 | 177 | cd03222, ABC_RNaseL_inhibitor, ATP-binding cassett | 4e-06 | |
| PRK15439 | 510 | PRK15439, PRK15439, autoinducer 2 ABC transporter | 6e-06 | |
| cd03237 | 246 | cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-bin | 7e-06 | |
| PRK13540 | 200 | PRK13540, PRK13540, cytochrome c biogenesis protei | 7e-06 | |
| TIGR03719 | 552 | TIGR03719, ABC_ABC_ChvD, ATP-binding cassette prot | 8e-06 | |
| PRK11147 | 635 | PRK11147, PRK11147, ABC transporter ATPase compone | 8e-06 | |
| COG0178 | 935 | COG0178, UvrA, Excinuclease ATPase subunit [DNA re | 8e-06 | |
| PRK10762 | 501 | PRK10762, PRK10762, D-ribose transporter ATP bindi | 9e-06 | |
| PRK11288 | 501 | PRK11288, araG, L-arabinose transporter ATP-bindin | 1e-05 | |
| PRK11819 | 556 | PRK11819, PRK11819, putative ABC transporter ATP-b | 1e-05 | |
| PRK13546 | 264 | PRK13546, PRK13546, teichoic acids export protein | 1e-05 | |
| cd03271 | 261 | cd03271, ABC_UvrA_II, ATP-binding cassette domain | 1e-05 | |
| PRK15064 | 530 | PRK15064, PRK15064, ABC transporter ATP-binding pr | 1e-05 | |
| COG1245 | 591 | COG1245, COG1245, Predicted ATPase, RNase L inhibi | 2e-05 | |
| PRK10636 | 638 | PRK10636, PRK10636, putative ABC transporter ATP-b | 2e-05 | |
| TIGR01257 | 2272 | TIGR01257, rim_protein, retinal-specific rim ABC t | 3e-05 | |
| PRK10938 | 490 | PRK10938, PRK10938, putative molybdenum transport | 3e-05 | |
| PRK15064 | 530 | PRK15064, PRK15064, ABC transporter ATP-binding pr | 3e-05 | |
| PRK10636 | 638 | PRK10636, PRK10636, putative ABC transporter ATP-b | 4e-05 | |
| TIGR00956 | 1394 | TIGR00956, 3a01205, Pleiotropic Drug Resistance (P | 4e-05 | |
| PRK13409 | 590 | PRK13409, PRK13409, putative ATPase RIL; Provision | 5e-05 | |
| TIGR00630 | 925 | TIGR00630, uvra, excinuclease ABC, A subunit | 5e-05 | |
| TIGR00956 | 1394 | TIGR00956, 3a01205, Pleiotropic Drug Resistance (P | 6e-05 | |
| TIGR01257 | 2272 | TIGR01257, rim_protein, retinal-specific rim ABC t | 9e-05 | |
| PRK11147 | 635 | PRK11147, PRK11147, ABC transporter ATPase compone | 1e-04 | |
| PLN03073 | 718 | PLN03073, PLN03073, ABC transporter F family; Prov | 2e-04 | |
| TIGR00956 | 1394 | TIGR00956, 3a01205, Pleiotropic Drug Resistance (P | 2e-04 | |
| cd03271 | 261 | cd03271, ABC_UvrA_II, ATP-binding cassette domain | 2e-04 | |
| PRK15064 | 530 | PRK15064, PRK15064, ABC transporter ATP-binding pr | 2e-04 | |
| PRK10762 | 501 | PRK10762, PRK10762, D-ribose transporter ATP bindi | 4e-04 | |
| PLN03140 | 1470 | PLN03140, PLN03140, ABC transporter G family membe | 6e-04 | |
| PRK11819 | 556 | PRK11819, PRK11819, putative ABC transporter ATP-b | 7e-04 | |
| PRK15064 | 530 | PRK15064, PRK15064, ABC transporter ATP-binding pr | 7e-04 | |
| PRK13541 | 195 | PRK13541, PRK13541, cytochrome c biogenesis protei | 8e-04 | |
| cd03227 | 162 | cd03227, ABC_Class2, ATP-binding cassette domain o | 9e-04 | |
| PRK11288 | 501 | PRK11288, araG, L-arabinose transporter ATP-bindin | 0.001 | |
| cd03238 | 176 | cd03238, ABC_UvrA, ATP-binding cassette domain of | 0.001 | |
| PRK15064 | 530 | PRK15064, PRK15064, ABC transporter ATP-binding pr | 0.001 | |
| PRK13541 | 195 | PRK13541, PRK13541, cytochrome c biogenesis protei | 0.001 | |
| cd03270 | 226 | cd03270, ABC_UvrA_I, ATP-binding cassette domain I | 0.001 | |
| cd03223 | 166 | cd03223, ABCD_peroxisomal_ALDP, ATP-binding casset | 0.002 | |
| PRK11147 | 635 | PRK11147, PRK11147, ABC transporter ATPase compone | 0.002 | |
| PRK15064 | 530 | PRK15064, PRK15064, ABC transporter ATP-binding pr | 0.002 | |
| TIGR00630 | 925 | TIGR00630, uvra, excinuclease ABC, A subunit | 0.002 | |
| cd03240 | 204 | cd03240, ABC_Rad50, ATP-binding cassette domain of | 0.002 | |
| cd03240 | 204 | cd03240, ABC_Rad50, ATP-binding cassette domain of | 0.002 | |
| cd03223 | 166 | cd03223, ABCD_peroxisomal_ALDP, ATP-binding casset | 0.003 | |
| PRK11147 | 635 | PRK11147, PRK11147, ABC transporter ATPase compone | 0.003 | |
| COG0178 | 935 | COG0178, UvrA, Excinuclease ATPase subunit [DNA re | 0.004 | |
| cd03227 | 162 | cd03227, ABC_Class2, ATP-binding cassette domain o | 0.004 | |
| cd03278 | 197 | cd03278, ABC_SMC_barmotin, ATP-binding cassette do | 0.004 |
| >gnl|CDD|213216 cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins | Back alignment and domain information |
|---|
Score = 419 bits (1079), Expect = e-139
Identities = 151/238 (63%), Positives = 184/238 (77%), Gaps = 1/238 (0%)
Query: 206 IEFSEVCFAYPSRP-HMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKI 264
IEF V F YPSRP + + L+ ++ GKT A VG SG GKST++S+++R Y+PTSG+I
Sbjct: 1 IEFKNVSFRYPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEI 60
Query: 265 LLDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNILLGKEDASMDRVIEAAKAANAHS 324
LLDG D++ L L+WLR Q+GLVSQEP LF +IA NI GK DA+ + V EAAK AN H
Sbjct: 61 LLDGVDIRDLNLRWLRSQIGLVSQEPVLFDGTIAENIRYGKPDATDEEVEEAAKKANIHD 120
Query: 325 FVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQR 384
F+ LPDGY T VGE G+QLSGGQKQRIAIARA+LRNPKILLLDEATSALDAESE +VQ
Sbjct: 121 FIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNPKILLLDEATSALDAESEKLVQE 180
Query: 385 ALEKIMSNRTTIVVAHRLSTVRDVDTIMVLKNGQVVESGTHVDLISKGGEYAALVNLQ 442
AL++ M RTTIV+AHRLST+R+ D I VL+NGQVVE GTH +L+++ G YA LV Q
Sbjct: 181 ALDRAMKGRTTIVIAHRLSTIRNADLIAVLQNGQVVEQGTHDELMAQKGVYAKLVKAQ 238
|
MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. Length = 238 |
| >gnl|CDD|213216 cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins | Back alignment and domain information |
|---|
Score = 404 bits (1040), Expect = e-134
Identities = 148/239 (61%), Positives = 190/239 (79%), Gaps = 1/239 (0%)
Query: 835 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTV 894
IE +NVSF+YP RPD+ I + L+L + G+++A+VG SG GKSTV+SL+ RFYDP SG +
Sbjct: 1 IEFKNVSFRYPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEI 60
Query: 895 LIDGYDIRTLNLRSLRRKIGLVQQEPALFSTTIYENIKYGNEDASEIELMKATKAANAHG 954
L+DG DIR LNLR LR +IGLV QEP LF TI ENI+YG DA++ E+ +A K AN H
Sbjct: 61 LLDGVDIRDLNLRWLRSQIGLVSQEPVLFDGTIAENIRYGKPDATDEEVEEAAKKANIHD 120
Query: 955 FISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQE 1014
FI +P+GY + VG+RG QLSGGQKQR+AIARA+L+NP ILLLDEATSALD SE L+QE
Sbjct: 121 FIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNPKILLLDEATSALDAESEKLVQE 180
Query: 1015 ALDKLMEGRTTIMVAHRLSTIRNADKIAVLQQGKVAEIGSHEQLLRKENGIYKQLIRLQ 1073
ALD+ M+GRTTI++AHRLSTIRNAD IAVLQ G+V E G+H++L+ + G+Y +L++ Q
Sbjct: 181 ALDRAMKGRTTIVIAHRLSTIRNADLIAVLQNGQVVEQGTHDELM-AQKGVYAKLVKAQ 238
|
MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. Length = 238 |
| >gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 410 bits (1055), Expect = e-131
Identities = 203/582 (34%), Positives = 318/582 (54%), Gaps = 16/582 (2%)
Query: 496 PSIWELLKLNAAEWPYAVLGSVGAILAGMEAPLFALGITHILTAFYSPHDSQIKRVVDQV 555
S+ L + + + A + L L I I+ A + ++ +
Sbjct: 1 LSLLRRLLKYLKYKLLLLAILLLLLSALLSLLLPLL-IGRIIDALLADLGELLE-----L 54
Query: 556 ALIFVGLAVVTIPVYLLQHYFYTLMGEHLTARVRLSMFSAILSNEIGWFDLDENNTGLLI 615
L+ + LA++ + LQ Y + +G+ + A +R +F +L + +FD + +G LI
Sbjct: 55 LLLLLLLALLGGVLRALQSYLGSRLGQKIVADLRRDLFEKLLRLPLSFFD--KAKSGDLI 112
Query: 616 STLAADATLVRSALADRLSIIVQNVALTVTAFVIAFILSWRLAAVVAASLPLLIGAFVAE 675
S L D V + ++ L ++ ++ L + + V+ F LSWRLA ++ LPLL
Sbjct: 113 SRLTNDVEAVSNLVSTVLVLVFTSILLLIGSLVLLFSLSWRLALILLLILPLLALVLSLL 172
Query: 676 QLFLKGFGGDYNRAYSRATSVAREAIANIRTVAAYGIEKRISIQFASELSQPNKQALLRG 735
+ A + E+++ IR + A+G E R +F + + L
Sbjct: 173 ARKSRKLSRRVREALGELNARLLESLSGIRVIKAFGAEDRELKRFEEANEELRRANLRAS 232
Query: 736 HISGFGYGVSQLLSLCSYALGLWYASVLIKQKGSNFGDIMKSFMVLIITALAVAETLA-L 794
+ + LLS L L L+ G + +F++ ++ L L +
Sbjct: 233 RLEALLAPLMLLLSSLGTVLVLALGGFLVLSGSLTVGALA-AFILYLLRLLTPILQLGEV 291
Query: 795 APDIVKGSQALGPVFGILYRKTAIQPDDPASKEVTEIKGNIELRNVSFKYPVRPDITIFE 854
+ + S A +F +L + ++ K+ G+IE NVSF YP + +
Sbjct: 292 VSLLQRASAAAERLFELLDEEPEVEDPPDPLKDT---IGSIEFENVSFSYP--GKKPVLK 346
Query: 855 NLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRKIG 914
+++ + G +A+VG SGSGKST+I L++R YDP SG +LIDG DIR ++L SLR++IG
Sbjct: 347 DISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDSLRKRIG 406
Query: 915 LVQQEPALFSTTIYENIKYGNEDASEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQL 974
+V Q+P LFS TI ENI G DA++ E+ +A K ANAH FI+ +P+GY + VG+RGV L
Sbjct: 407 IVSQDPLLFSGTIRENIALGRPDATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNL 466
Query: 975 SGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLMEGRTTIMVAHRLST 1034
SGGQ+QR+AIARA+L+NP IL+LDEATSALDT +E LIQ+AL KL++GRTT+++AHRLST
Sbjct: 467 SGGQRQRLAIARALLRNPPILILDEATSALDTETEALIQDALKKLLKGRTTLIIAHRLST 526
Query: 1035 IRNADKIAVLQQGKVAEIGSHEQLLRKENGIYKQLIRLQQDK 1076
I+NAD+I VL G++ E G+HE+LL K G+Y +L + Q
Sbjct: 527 IKNADRIIVLDNGRIVERGTHEELLAK-GGLYARLYQAQGGA 567
|
Length = 567 |
| >gnl|CDD|131259 TIGR02204, MsbA_rel, ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Score = 390 bits (1003), Expect = e-123
Identities = 201/589 (34%), Positives = 321/589 (54%), Gaps = 41/589 (6%)
Query: 506 AAEWPYAVLGSVGAILAGMEAPLFALGITHILT-------------AFYSPHDSQIKRVV 552
AA WP+ V + A L AL IT T F + R
Sbjct: 7 AALWPF-----VRPYRGRVLAALVALLITAAATLSLPYAVRLMIDHGFSKDSSGLLNRYF 61
Query: 553 DQVALIFVGLAVVTIPVYLLQHYFYTLMGEHLTARVRLSMFSAILSNEIGWFDLDENNTG 612
+ ++ + LA+ T + Y T +GE + A +R ++F+ ++S +FD +N +G
Sbjct: 62 AFLLVVALVLALGT----AARFYLVTWLGERVVADIRRAVFAHLISLSPSFFD--KNRSG 115
Query: 613 LLISTLAADATLVRSALADRLSIIVQNVALTVTAFVIAFILSWRLAAVVAASLPLLIGAF 672
++S L D TL++S + LS+ ++N + + ++ FI S +L ++V ++PL++
Sbjct: 116 EVVSRLTTDTTLLQSVIGSSLSMALRNALMCIGGLIMMFITSPKLTSLVLLAVPLVLLPI 175
Query: 673 VAEQLFLKGFGGDYNRAYSR--------ATSVAREAIANIRTVAAYGIEKRISIQFASEL 724
+ G R SR A S A E + IRTV A+G E +F +
Sbjct: 176 L--------LFGRRVRKLSRESQDRIADAGSYAGETLGAIRTVQAFGHEDAERSRFGGAV 227
Query: 725 SQPNKQALLRGHISGFGYGVSQLLSLCSYALGLWYASVLIKQKGSNFGDIMKSFMVLIIT 784
+ + A R + +L + LW + + + G + + ++
Sbjct: 228 EKAYEAARQRIRTRALLTAIVIVLVFGAIVGVLWVGAHDVIAGKMSAGTLGQFVFYAVMV 287
Query: 785 ALAVAETLALAPDIVKGSQALGPVFGILYRKTAIQPDDPASKEVTEIKGNIELRNVSFKY 844
A ++ + ++ + + A + +L + I+ ++G IE V+F Y
Sbjct: 288 AGSIGTLSEVWGELQRAAGAAERLIELLQAEPDIKAPAHPKTLPVPLRGEIEFEQVNFAY 347
Query: 845 PVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTL 904
P RPD + LNL V G ++A+VG SG+GKST+ L++RFYDP SG +L+DG D+R L
Sbjct: 348 PARPDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDLRQL 407
Query: 905 NLRSLRRKIGLVQQEPALFSTTIYENIKYGNEDASEIELMKATKAANAHGFISRMPEGYQ 964
+ LR ++ LV Q+P LF+ ++ ENI+YG DA++ E+ A +AA+AH FIS +PEGY
Sbjct: 408 DPAELRARMALVPQDPVLFAASVMENIRYGRPDATDEEVEAAARAAHAHEFISALPEGYD 467
Query: 965 SHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLMEGRT 1024
+++G+RGV LSGGQ+QR+AIARAILK+ ILLLDEATSALD SE L+Q+AL+ LM+GRT
Sbjct: 468 TYLGERGVTLSGGQRQRIAIARAILKDAPILLLDEATSALDAESEQLVQQALETLMKGRT 527
Query: 1025 TIMVAHRLSTIRNADKIAVLQQGKVAEIGSHEQLLRKENGIYKQLIRLQ 1073
T+++AHRL+T+ AD+I V+ QG++ G+H +L+ K G+Y +L RLQ
Sbjct: 528 TLIIAHRLATVLKADRIVVMDQGRIVAQGTHAELIAK-GGLYARLARLQ 575
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. Length = 576 |
| >gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 369 bits (948), Expect = e-115
Identities = 169/433 (39%), Positives = 257/433 (59%), Gaps = 5/433 (1%)
Query: 13 FFVGFAVGFTSVWQLTLLTLAVVPLIAVAGGAYTITMSTLSEKGEAAYGEAGKVAEEIIS 72
+ F+ W+L L+ L ++PL+A+ LS + A GE E +S
Sbjct: 140 LIGSLVLLFSLSWRLALILLLILPLLALVLSLLARKSRKLSRRVREALGELNARLLESLS 199
Query: 73 QVRAVYAFVGEAKAIESYSHSLKEALKQGKKSGVAKGIGVGLTYGLLFCAWALLLWYAGI 132
+R + AF E + ++ + + +E + ++ + + L L L+L G
Sbjct: 200 GIRVIKAFGAEDRELKRFEEANEELRRANLRASRLEALLAPLMLLLSSLGTVLVLALGGF 259
Query: 133 LVRHGDTNGGKAFTTIINVIFSGFALGQAAPNLAAIAKGKAAAANIISIIKENSHSSERP 192
LV G G I+ ++ + Q ++ + + AAA + ++ E + P
Sbjct: 260 LVLSGSLTVGALAAFILYLLRLLTPILQLGEVVSLLQRASAAAERLFELLDEEPEVEDPP 319
Query: 193 GDDGITLPKLAGQIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISM 252
L G IEF V F+YP + V ++++FS++ G+ A VGPSGSGKST+I +
Sbjct: 320 D----PLKDTIGSIEFENVSFSYPGKKP-VLKDISFSIEPGEKVAIVGPSGSGKSTLIKL 374
Query: 253 VQRLYEPTSGKILLDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNILLGKEDASMDR 312
+ RLY+PTSG+IL+DG D++ + L LR+++G+VSQ+P LF+ +I NI LG+ DA+ +
Sbjct: 375 LLRLYDPTSGEILIDGIDIRDISLDSLRKRIGIVSQDPLLFSGTIRENIALGRPDATDEE 434
Query: 313 VIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATS 372
+ EA K ANAH F+ LPDGY T VGE G LSGGQ+QR+AIARA+LRNP IL+LDEATS
Sbjct: 435 IEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLAIARALLRNPPILILDEATS 494
Query: 373 ALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRDVDTIMVLKNGQVVESGTHVDLISKG 432
ALD E+E ++Q AL+K++ RTT+++AHRLST+++ D I+VL NG++VE GTH +L++KG
Sbjct: 495 ALDTETEALIQDALKKLLKGRTTLIIAHRLSTIKNADRIIVLDNGRIVERGTHEELLAKG 554
Query: 433 GEYAALVNLQSSE 445
G YA L Q
Sbjct: 555 GLYARLYQAQGGA 567
|
Length = 567 |
| >gnl|CDD|213218 cd03251, ABCC_MsbA, ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 356 bits (915), Expect = e-115
Identities = 130/235 (55%), Positives = 181/235 (77%), Gaps = 2/235 (0%)
Query: 835 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTV 894
+E +NV+F+YP + +++L + AG ++A+VG SGSGKST+++L+ RFYD SG +
Sbjct: 1 VEFKNVTFRYPGDGP-PVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRI 59
Query: 895 LIDGYDIRTLNLRSLRRKIGLVQQEPALFSTTIYENIKYGNEDASEIELMKATKAANAHG 954
LIDG+D+R L SLRR+IGLV Q+ LF+ T+ ENI YG A+ E+ +A +AANAH
Sbjct: 60 LIDGHDVRDYTLASLRRQIGLVSQDVFLFNDTVAENIAYGRPGATREEVEEAARAANAHE 119
Query: 955 FISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQE 1014
FI +PEGY + +G+RGV+LSGGQ+QR+AIARA+LK+P IL+LDEATSALDT SE L+Q
Sbjct: 120 FIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPILILDEATSALDTESERLVQA 179
Query: 1015 ALDKLMEGRTTIMVAHRLSTIRNADKIAVLQQGKVAEIGSHEQLLRKENGIYKQL 1069
AL++LM+ RTT ++AHRLSTI NAD+I VL+ GK+ E G+HE+LL + G+Y +L
Sbjct: 180 ALERLMKNRTTFVIAHRLSTIENADRIVVLEDGKIVERGTHEELLAQ-GGVYAKL 233
|
MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 234 |
| >gnl|CDD|131259 TIGR02204, MsbA_rel, ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Score = 364 bits (936), Expect = e-114
Identities = 174/439 (39%), Positives = 252/439 (57%), Gaps = 4/439 (0%)
Query: 6 ALRYLSQFFVGFAVGFTSVWQLTLLTLAVVPLIAVAGGAYTITMSTLSEKGEAAYGEAGK 65
ALR G + F + +LT L L VPL+ + + + LS + + +AG
Sbjct: 139 ALRNALMCIGGLIMMFITSPKLTSLVLLAVPLVLLPILLFGRRVRKLSRESQDRIADAGS 198
Query: 66 VAEEIISQVRAVYAFVGEAKAIESYSHSLKEALKQGKKSGVAKGIGVGLTYGLLFCAWAL 125
A E + +R V AF E + ++++A + ++ + + + L+F A
Sbjct: 199 YAGETLGAIRTVQAFGHEDAERSRFGGAVEKAYEAARQRIRTRALLTAIVIVLVFGAIVG 258
Query: 126 LLWYAGILVRHGDTNGGKAFTTIINVIFSGFALGQAAPNLAAIAKGKAAAANIISIIKEN 185
+LW V G + G + + ++G + + + AA +I +++
Sbjct: 259 VLWVGAHDVIAGKMSAGTLGQFVFYAVMVAGSIGTLSEVWGELQRAAGAAERLIELLQAE 318
Query: 186 SHSSERPGDDGITLP-KLAGQIEFSEVCFAYPSRP-HMVFENLNFSVDAGKTFAFVGPSG 243
TLP L G+IEF +V FAYP+RP + LN +V G+T A VGPSG
Sbjct: 319 PDIKAPA--HPKTLPVPLRGEIEFEQVNFAYPARPDQPALDGLNLTVRPGETVALVGPSG 376
Query: 244 SGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNILL 303
+GKST+ ++ R Y+P SG+ILLDG DL+ L LR +M LV Q+P LFA S+ NI
Sbjct: 377 AGKSTLFQLLLRFYDPQSGRILLDGVDLRQLDPAELRARMALVPQDPVLFAASVMENIRY 436
Query: 304 GKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPK 363
G+ DA+ + V AA+AA+AH F+ LP+GY T +GE G LSGGQ+QRIAIARA+L++
Sbjct: 437 GRPDATDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQRQRIAIARAILKDAP 496
Query: 364 ILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRDVDTIMVLKNGQVVESG 423
ILLLDEATSALDAESE +VQ+ALE +M RTT+++AHRL+TV D I+V+ G++V G
Sbjct: 497 ILLLDEATSALDAESEQLVQQALETLMKGRTTLIIAHRLATVLKADRIVVMDQGRIVAQG 556
Query: 424 THVDLISKGGEYAALVNLQ 442
TH +LI+KGG YA L LQ
Sbjct: 557 THAELIAKGGLYARLARLQ 575
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. Length = 576 |
| >gnl|CDD|233209 TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Score = 367 bits (944), Expect = e-113
Identities = 200/606 (33%), Positives = 317/606 (52%), Gaps = 42/606 (6%)
Query: 480 SKRRELQSSDQSFAPSPSIWELLKLNAAEWPYAVLGSVG---AILAGMEAPLFALGITHI 536
+ +E + A ++ LL L+ +WP+ + V + L M P + +
Sbjct: 133 ASEKEAEQGQSETADL--LFRLLGLSGRDWPWLISAFVFLTLSSLGEMFIPFYTGRVIDT 190
Query: 537 LTAFYSPHDSQIKRVVDQVALIFVGL--AVVTIPVYLLQHYFYTLMGEHLTARVRLSMFS 594
L P A+ F+ L ++ L F M + R+R +F
Sbjct: 191 LGGDKGPPALAS-------AIFFMCLLSIASSVSAGLRGGSFNYTMA-RINLRIREDLFR 242
Query: 595 AILSNEIGWFDLDENNTGLLISTLAADATLVRSALADRLSIIVQNVALTVTAFVIAFILS 654
++L ++G+FD EN TG L S L++D + +L+ ++++++N+ + + LS
Sbjct: 243 SLLRQDLGFFD--ENKTGELTSRLSSDTQTMSRSLSLNVNVLLRNLVMLLGLLGFMLWLS 300
Query: 655 WRLAAVVAASLPLLIGAFVAEQLFLKGFGGDYNRAYS--------RATSVAREAIANIRT 706
RL V +LPL+ F+AE++F G + S +A VA EA++ +RT
Sbjct: 301 PRLTMVTLINLPLV---FLAEKVF-----GKRYQLLSEELQEAVAKANQVAEEALSGMRT 352
Query: 707 VAAYGIEKRISIQFASELSQPNKQALLRGHISGFGY-GVSQLLSLCSYALGLWYASVLIK 765
V ++ E+ + +F L + Q R ++ GY + +L + L L+Y L+
Sbjct: 353 VRSFAAEEGEASRFKEALEE-TLQLNKRKALAYAGYLWTTSVLGMLIQVLVLYYGGQLVL 411
Query: 766 QKGSNFGDIMKSFMVLII-TALAVAETLALAPDIVKGSQALGPVFGILYRKTAIQPDDPA 824
+ G+++ SF++ AV + +++ A VF L RK I
Sbjct: 412 TGKVSSGNLV-SFLLYQEQLGEAVRVLSYVYSGMMQAVGASEKVFEYLDRKPNIPL--TG 468
Query: 825 SKEVTEIKGNIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVM 884
+ ++G IE ++VSF YP RPD+ + + L + G +A+VG SGSGKSTV +L+
Sbjct: 469 TLAPLNLEGLIEFQDVSFSYPNRPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQ 528
Query: 885 RFYDPISGTVLIDGYDIRTLNLRSLRRKIGLVQQEPALFSTTIYENIKYGNEDASEIELM 944
Y P G VL+DG + + L R++ LV QEP LFS ++ ENI YG D + E+M
Sbjct: 529 NLYQPTGGQVLLDGVPLVQYDHHYLHRQVALVGQEPVLFSGSVRENIAYGLTDTPDEEIM 588
Query: 945 KATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSAL 1004
A KAANAH FI P GY + VG++G QLSGGQKQR+AIARA+++ P +L+LDEATSAL
Sbjct: 589 AAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQRIAIARALVRKPRVLILDEATSAL 648
Query: 1005 DTASENLIQEALDKLMEGRTTIMVAHRLSTIRNADKIAVLQQGKVAEIGSHEQLLRKENG 1064
D E L+QE + RT +++AHRLST+ AD+I VL++G V E+G+H+Q L ++ G
Sbjct: 649 DAECEQLLQE--SRSRASRTVLLIAHRLSTVERADQILVLKKGSVVEMGTHKQ-LMEDQG 705
Query: 1065 IYKQLI 1070
YK L+
Sbjct: 706 CYKHLV 711
|
[Transport and binding proteins, Other]. Length = 711 |
| >gnl|CDD|213218 cd03251, ABCC_MsbA, ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 343 bits (881), Expect = e-110
Identities = 127/233 (54%), Positives = 175/233 (75%)
Query: 206 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKIL 265
+EF V F YP V +++ + AG+T A VGPSGSGKST+++++ R Y+ SG+IL
Sbjct: 1 VEFKNVTFRYPGDGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRIL 60
Query: 266 LDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNILLGKEDASMDRVIEAAKAANAHSF 325
+DGHD++ L LR Q+GLVSQ+ LF ++A NI G+ A+ + V EAA+AANAH F
Sbjct: 61 IDGHDVRDYTLASLRRQIGLVSQDVFLFNDTVAENIAYGRPGATREEVEEAARAANAHEF 120
Query: 326 VEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRA 385
+ LP+GY T +GE G +LSGGQ+QRIAIARA+L++P IL+LDEATSALD ESE +VQ A
Sbjct: 121 IMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPILILDEATSALDTESERLVQAA 180
Query: 386 LEKIMSNRTTIVVAHRLSTVRDVDTIMVLKNGQVVESGTHVDLISKGGEYAAL 438
LE++M NRTT V+AHRLST+ + D I+VL++G++VE GTH +L+++GG YA L
Sbjct: 181 LERLMKNRTTFVIAHRLSTIENADRIVVLEDGKIVERGTHEELLAQGGVYAKL 233
|
MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 234 |
| >gnl|CDD|213220 cd03253, ABCC_ATM1_transporter, ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C | Back alignment and domain information |
|---|
Score = 339 bits (871), Expect = e-109
Identities = 133/239 (55%), Positives = 178/239 (74%), Gaps = 3/239 (1%)
Query: 835 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTV 894
IE NV+F Y P + ++++ + AG+ +A+VG SGSGKST++ L+ RFYD SG++
Sbjct: 1 IEFENVTFAYD--PGRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSI 58
Query: 895 LIDGYDIRTLNLRSLRRKIGLVQQEPALFSTTIYENIKYGNEDASEIELMKATKAANAHG 954
LIDG DIR + L SLRR IG+V Q+ LF+ TI NI+YG DA++ E+++A KAA H
Sbjct: 59 LIDGQDIREVTLDSLRRAIGVVPQDTVLFNDTIGYNIRYGRPDATDEEVIEAAKAAQIHD 118
Query: 955 FISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQE 1014
I R P+GY + VG+RG++LSGG+KQRVAIARAILKNP ILLLDEATSALDT +E IQ
Sbjct: 119 KIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPPILLLDEATSALDTHTEREIQA 178
Query: 1015 ALDKLMEGRTTIMVAHRLSTIRNADKIAVLQQGKVAEIGSHEQLLRKENGIYKQLIRLQ 1073
AL + +GRTTI++AHRLSTI NADKI VL+ G++ E G+HE+LL K G+Y ++ + Q
Sbjct: 179 ALRDVSKGRTTIVIAHRLSTIVNADKIIVLKDGRIVERGTHEELLAK-GGLYAEMWKAQ 236
|
ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 236 |
| >gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Score = 343 bits (882), Expect = e-106
Identities = 189/574 (32%), Positives = 311/574 (54%), Gaps = 20/574 (3%)
Query: 509 WPYA-------VLGSVGAILAGMEAPLFALGITHILTAFYSPHDSQIKRVVDQVALIFVG 561
W Y VL V IL A + +L + D V+ V L+ +G
Sbjct: 6 WSYVRPYKAGLVLAGVAMILVAATESTLAALLKPLLDDGFGGRDRS---VLWWVPLVVIG 62
Query: 562 LAVVTIPVYLLQHYFYTLMGEHLTARVRLSMFSAILSNEIGWFDLDENNTGLLISTLAAD 621
LAV+ + Y + + + +R+ MF +L + +FD TG L+S + D
Sbjct: 63 LAVLRGICSFVSTYLLSWVSNKVVRDIRVRMFEKLLGLPVSFFD--RQPTGTLLSRITFD 120
Query: 622 ATLVRSALADRLSIIVQNVALTVTAFVIAFILSWRLAAVVAASLPLLIGAFVAEQLFLKG 681
+ V SA D ++V+ + F++ SW+L +V LP+L L+
Sbjct: 121 SEQVASAATDAFIVLVRETLTVIGLFIVLLYYSWQLTLIVVVMLPVLSILMRRVSKRLRR 180
Query: 682 FGGDYNRAYSRATSVAREAIANIRTVAAYGIEKRISIQFASELSQPNKQALLRGHISGFG 741
+ + + T+VA E + R V +G + + +F + ++ + A+
Sbjct: 181 ISKEIQNSMGQVTTVAEETLQGYRVVKLFGGQAYETRRFDAVSNRNRRLAMKMTSAGSIS 240
Query: 742 YGVSQLLSLCSYALGLWYASVLIKQKGSNFGDIMKSFMVLIITALAVAETLA-LAPDIVK 800
++QL++ + A+ L+ A + GD +F+ +I + ++L + + +
Sbjct: 241 SPITQLIASLALAVVLFIALFQAQAGSLTAGDFT-AFITAMIALIRPLKSLTNVNAPMQR 299
Query: 801 GSQALGPVFGILYRKTAIQPDDPASKEVTEIKGNIELRNVSFKYPVRPDITIFENLNLKV 860
G A +F +L + + D ++ + +G++E RNV+F+YP R D ++++L +
Sbjct: 300 GLAAAESLFTLL--DSPPEKDT-GTRAIERARGDVEFRNVTFRYPGR-DRPALDSISLVI 355
Query: 861 SAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRKIGLVQQEP 920
G ++A+VG+SGSGKST+++L+ RFY+P SG +L+DG+D+ L SLRR++ LV Q+
Sbjct: 356 EPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYTLASLRRQVALVSQDV 415
Query: 921 ALFSTTIYENIKYGN-EDASEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQK 979
LF+ TI NI YG E A E+ +A AA A F+ ++P G + +G+ GV LSGGQ+
Sbjct: 416 VLFNDTIANNIAYGRTEQADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQR 475
Query: 980 QRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLMEGRTTIMVAHRLSTIRNAD 1039
QR+AIARA+LK+ IL+LDEATSALD SE L+Q AL++LM+GRTT+++AHRLSTI AD
Sbjct: 476 QRLAIARALLKDAPILILDEATSALDNESERLVQAALERLMQGRTTLVIAHRLSTIEKAD 535
Query: 1040 KIAVLQQGKVAEIGSHEQLLRKENGIYKQLIRLQ 1073
+I V+ G++ E G+H +LL NG+Y QL +Q
Sbjct: 536 RIVVMDDGRIVERGTHNELL-ARNGLYAQLHNMQ 568
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]. Length = 571 |
| >gnl|CDD|225183 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 342 bits (880), Expect = e-104
Identities = 171/449 (38%), Positives = 241/449 (53%), Gaps = 17/449 (3%)
Query: 3 TGHALRYLSQ---FFVGFAVGFTSVWQLTLLTLAVVPLIAVAGGAYTITMSTLSEKGEAA 59
TG L + + AV F W+LTL+ LA +PL + + + + K
Sbjct: 268 TGSILTLIIDLLFALIFLAVMFLYSWKLTLIVLAAIPLNVLITLIFQPLLRRKTRKLIEE 327
Query: 60 YGEAGKVAEEIISQVRAVYAFVGEAKAIESYSHSLKEALKQGKKSGVAKGIGVGLTYGLL 119
E E I + V A E + + + L + + G K+ I + LL
Sbjct: 328 SAEQQSFLVETIKGIETVKALAAEPRFRSQWDNRLAKQVNIGFKTEKLALILNTIK-SLL 386
Query: 120 F-CAWALLLWYAGILVRHGDTNGGK--AFTTI---INVIFSGFALGQAAPNLAAIAKGKA 173
+ L+LW+ ILV G+ G+ AF + + + A +A +
Sbjct: 387 QQLSSVLILWFGAILVLEGELTLGQLVAFNMLAGYFISPITRLSQLWTDFQQAKVALERL 446
Query: 174 AAANIISIIKENSHSSERPGDDGITLPKLAGQIEFSEVCFAYPSRPHMVFENLNFSVDAG 233
+I+ E I LPKL G+IEF V F Y V E+L+ + G
Sbjct: 447 G--DILDTPPEQEG-----DKTLIHLPKLQGEIEFENVSFRYGPDDPPVLEDLSLEIPPG 499
Query: 234 KTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGLVSQEPALF 293
+ A VG SGSGKST++ ++ LY+P G+ILLDG DL + L LR Q+G V Q+P LF
Sbjct: 500 EKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDIDLASLRRQVGYVLQDPFLF 559
Query: 294 ATSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIA 353
+ SI NI LG +A+ + +IEAA+ A AH F+E LP GY T VGEGG LSGGQ+QR+A
Sbjct: 560 SGSIRENIALGNPEATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRLA 619
Query: 354 IARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRDVDTIMV 413
+ARA+L PKILLLDEATSALD E+E I+ + L +I+ RT I++AHRLST+R D I+V
Sbjct: 620 LARALLSKPKILLLDEATSALDPETEAIILQNLLQILQGRTVIIIAHRLSTIRSADRIIV 679
Query: 414 LKNGQVVESGTHVDLISKGGEYAALVNLQ 442
L G++VE G+H +L+++GG YA L Q
Sbjct: 680 LDQGKIVEQGSHEELLAQGGLYARLYQQQ 708
|
Length = 709 |
| >gnl|CDD|233209 TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Score = 337 bits (867), Expect = e-102
Identities = 168/441 (38%), Positives = 248/441 (56%), Gaps = 20/441 (4%)
Query: 7 LRYLSQFFVGFAVGFTSVWQLTLLTLAVVPLIAVAGGAYTITMSTLSEKGEAAYGEAGKV 66
LR L +LT++TL +PL+ +A + LSE+ + A +A +V
Sbjct: 283 LRNLVMLLGLLGFMLWLSPRLTMVTLINLPLVFLAEKVFGKRYQLLSEELQEAVAKANQV 342
Query: 67 AEEIISQVRAVYAFVGEAKAIESYSHSLKEALKQGKKSGVAKGIGVGLTYGLLFCAWALL 126
AEE +S +R V +F E + +L+E L+ K+ +A G + +
Sbjct: 343 AEEALSGMRTVRSFAAEEGEASRFKEALEETLQLNKRKALAY---AGYLWTTSVLGMLIQ 399
Query: 127 ---LWYAGILVRHGDTNGGKAFTTIINVIFSGFALGQAAPNLAAI----AKGKAAAANII 179
L+Y G LV G + G +++ + LG+A L+ + + A+ +
Sbjct: 400 VLVLYYGGQLVLTGKVSSG----NLVSFLLYQEQLGEAVRVLSYVYSGMMQAVGASEKVF 455
Query: 180 SIIKENSHSSERPGDDGITLPKLAGQIEFSEVCFAYPSRPHM-VFENLNFSVDAGKTFAF 238
+ + + G + L G IEF +V F+YP+RP + V + L F++ G+ A
Sbjct: 456 EYL-DRKPNIPLTG--TLAPLNLEGLIEFQDVSFSYPNRPDVPVLKGLTFTLHPGEVVAL 512
Query: 239 VGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGLVSQEPALFATSIA 298
VGPSGSGKST+ +++Q LY+PT G++LLDG L +L Q+ LV QEP LF+ S+
Sbjct: 513 VGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQYDHHYLHRQVALVGQEPVLFSGSVR 572
Query: 299 NNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAV 358
NI G D + ++ AAKAANAH F+ P+GY T+VGE G+QLSGGQKQRIAIARA+
Sbjct: 573 ENIAYGLTDTPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQRIAIARAL 632
Query: 359 LRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRDVDTIMVLKNGQ 418
+R P++L+LDEATSALDAE E ++Q + + ++RT +++AHRLSTV D I+VLK G
Sbjct: 633 VRKPRVLILDEATSALDAECEQLLQESRSR--ASRTVLLIAHRLSTVERADQILVLKKGS 690
Query: 419 VVESGTHVDLISKGGEYAALV 439
VVE GTH L+ G Y LV
Sbjct: 691 VVEMGTHKQLMEDQGCYKHLV 711
|
[Transport and binding proteins, Other]. Length = 711 |
| >gnl|CDD|213220 cd03253, ABCC_ATM1_transporter, ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C | Back alignment and domain information |
|---|
Score = 319 bits (821), Expect = e-102
Identities = 128/238 (53%), Positives = 170/238 (71%), Gaps = 3/238 (1%)
Query: 206 IEFSEVCFAY-PSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKI 264
IEF V FAY P RP V ++++F++ AGK A VGPSGSGKSTI+ ++ R Y+ +SG I
Sbjct: 1 IEFENVTFAYDPGRP--VLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSI 58
Query: 265 LLDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNILLGKEDASMDRVIEAAKAANAHS 324
L+DG D++ + L LR +G+V Q+ LF +I NI G+ DA+ + VIEAAKAA H
Sbjct: 59 LIDGQDIREVTLDSLRRAIGVVPQDTVLFNDTIGYNIRYGRPDATDEEVIEAAKAAQIHD 118
Query: 325 FVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQR 384
+ PDGY T VGE G +LSGG+KQR+AIARA+L+NP ILLLDEATSALD +E +Q
Sbjct: 119 KIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPPILLLDEATSALDTHTEREIQA 178
Query: 385 ALEKIMSNRTTIVVAHRLSTVRDVDTIMVLKNGQVVESGTHVDLISKGGEYAALVNLQ 442
AL + RTTIV+AHRLST+ + D I+VLK+G++VE GTH +L++KGG YA + Q
Sbjct: 179 ALRDVSKGRTTIVIAHRLSTIVNADKIIVLKDGRIVERGTHEELLAKGGLYAEMWKAQ 236
|
ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 236 |
| >gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Score = 333 bits (857), Expect = e-102
Identities = 163/434 (37%), Positives = 244/434 (56%), Gaps = 13/434 (2%)
Query: 17 FAVGFTSVWQLTLLTLAVVPLIAVAGGAYTITMSTLSEKGEAAYGEAGKVAEEIISQVRA 76
F V WQLTL+ + ++P++++ + + +S++ + + G+ VAEE + R
Sbjct: 146 FIVLLYYSWQLTLIVVVMLPVLSILMRRVSKRLRRISKEIQNSMGQVTTVAEETLQGYRV 205
Query: 77 VYAFVGEAKAIESYSHSLKEALKQGKKSGVAKGIGVGLTYGLLFCAWALLLWYAGILVRH 136
V F G+A + + K A I +T + A A++L+ A +
Sbjct: 206 VKLFGGQAYETRRFDAVSNRNRRLAMKMTSAGSISSPITQLIASLALAVVLFIALFQAQA 265
Query: 137 GDTNGGKAFTTIINVIFSGFALGQAAPNLAAIA----KGKAAAANIISIIKENSHSSERP 192
G G I + AL + +L + +G AAA ++ +++ S
Sbjct: 266 GSLTAG----DFTAFITAMIALIRPLKSLTNVNAPMQRGLAAAESLFTLLD----SPPEK 317
Query: 193 GDDGITLPKLAGQIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISM 252
+ + G +EF V F YP R ++++ ++ G+T A VG SGSGKST++++
Sbjct: 318 DTGTRAIERARGDVEFRNVTFRYPGRDRPALDSISLVIEPGETVALVGRSGSGKSTLVNL 377
Query: 253 VQRLYEPTSGKILLDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNILLGK-EDASMD 311
+ R YEP SG+ILLDGHDL L LR Q+ LVSQ+ LF +IANNI G+ E A
Sbjct: 378 IPRFYEPDSGQILLDGHDLADYTLASLRRQVALVSQDVVLFNDTIANNIAYGRTEQADRA 437
Query: 312 RVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEAT 371
+ A AA A FV+ LP G T +GE G LSGGQ+QR+AIARA+L++ IL+LDEAT
Sbjct: 438 EIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQRQRLAIARALLKDAPILILDEAT 497
Query: 372 SALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRDVDTIMVLKNGQVVESGTHVDLISK 431
SALD ESE +VQ ALE++M RTT+V+AHRLST+ D I+V+ +G++VE GTH +L+++
Sbjct: 498 SALDNESERLVQAALERLMQGRTTLVIAHRLSTIEKADRIVVMDDGRIVERGTHNELLAR 557
Query: 432 GGEYAALVNLQSSE 445
G YA L N+Q E
Sbjct: 558 NGLYAQLHNMQFRE 571
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]. Length = 571 |
| >gnl|CDD|213221 cd03254, ABCC_Glucan_exporter_like, ATP-binding cassette domain of glucan transporter and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 316 bits (813), Expect = e-101
Identities = 114/230 (49%), Positives = 172/230 (74%), Gaps = 1/230 (0%)
Query: 204 GQIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGK 263
G+IEF V F+Y + V +++NFS+ G+T A VGP+G+GK+T+I+++ R Y+P G+
Sbjct: 1 GEIEFENVNFSYDEK-KPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQ 59
Query: 264 ILLDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNILLGKEDASMDRVIEAAKAANAH 323
IL+DG D++ + K LR +G+V Q+ LF+ +I NI LG+ +A+ + VIEAAK A AH
Sbjct: 60 ILIDGIDIRDISRKSLRSMIGVVLQDTFLFSGTIMENIRLGRPNATDEEVIEAAKEAGAH 119
Query: 324 SFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQ 383
F+ LP+GY T +GE G LS G++Q +AIARA+LR+PKIL+LDEATS +D E+E ++Q
Sbjct: 120 DFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPKILILDEATSNIDTETEKLIQ 179
Query: 384 RALEKIMSNRTTIVVAHRLSTVRDVDTIMVLKNGQVVESGTHVDLISKGG 433
ALEK+M RT+I++AHRLST+++ D I+VL +G+++E GTH +L++K G
Sbjct: 180 EALEKLMKGRTSIIIAHRLSTIKNADKILVLDDGKIIEEGTHDELLAKKG 229
|
Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 229 |
| >gnl|CDD|225183 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 332 bits (854), Expect = e-100
Identities = 181/571 (31%), Positives = 293/571 (51%), Gaps = 50/571 (8%)
Query: 529 FALGITHILTAFYSPHDSQIKRVVDQV------------ALIFVGLAVVTIPVYLLQHYF 576
L + + T +S QI V+D+V A+ + A+ + LL+ Y
Sbjct: 164 LLLQLLALATPLFS----QI--VIDKVLPDASRSTLTVLAIGLLLAALFEALLRLLRTYL 217
Query: 577 YTLMGEHLTARVRLSMFSAILSNEIGWFDLDEN-NTGLLISTLAADATLVRSALADRLSI 635
+G+ L + F +L + +F E + G +IS + +R L +
Sbjct: 218 IAHLGKRLDLELSGRFFRHLLRLPLSYF---EKRSVGEIIS-RVRELEQIREFLTGSILT 273
Query: 636 IVQNVALTVTAFVIAFILSWRLAAVVAASLPLLIGAFVAEQLFLKGFGGDYNR----AYS 691
++ ++ + + F+ SW+L +V A++PL + + Q L+ R +
Sbjct: 274 LIIDLLFALIFLAVMFLYSWKLTLIVLAAIPLNVLITLIFQPLLR----RKTRKLIEESA 329
Query: 692 RATSVAREAIANIRTVAAYGIEKRISIQFASELSQPNKQALLRGHISGFGYGVSQLLSLC 751
S E I I TV A E R Q+ + L++ ++ + LL
Sbjct: 330 EQQSFLVETIKGIETVKALAAEPRFRSQWDNRLAKQVNIGFKTEKLALILNTIKSLLQQL 389
Query: 752 SYALGLWYASVLIKQKGSNFGDIMKSFMVLIIT--------ALAVAETLALAPDIVKGSQ 803
S L LW+ ++L+ G++ +V +++ +
Sbjct: 390 SSVLILWFGAILV-----LEGELTLGQLVAFNMLAGYFISPITRLSQLWTDFQQAKVALE 444
Query: 804 ALGPVFGILYRKTAIQPDDPASKEVTEIKGNIELRNVSFKYPVRPDITIFENLNLKVSAG 863
LG IL + D +++G IE NVSF+Y + E+L+L++ G
Sbjct: 445 RLGD---ILDTPPEQEGDKTLIHLP-KLQGEIEFENVSFRYGPDDPPVL-EDLSLEIPPG 499
Query: 864 RSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRKIGLVQQEPALF 923
+A+VG+SGSGKST++ L++ Y P G +L+DG D+ ++L SLRR++G V Q+P LF
Sbjct: 500 EKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDIDLASLRRQVGYVLQDPFLF 559
Query: 924 STTIYENIKYGNEDASEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVA 983
S +I ENI GN +A++ E+++A + A AH FI +P GY + VG+ G LSGGQ+QR+A
Sbjct: 560 SGSIRENIALGNPEATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRLA 619
Query: 984 IARAILKNPSILLLDEATSALDTASENLIQEALDKLMEGRTTIMVAHRLSTIRNADKIAV 1043
+ARA+L P ILLLDEATSALD +E +I + L ++++GRT I++AHRLSTIR+AD+I V
Sbjct: 620 LARALLSKPKILLLDEATSALDPETEAIILQNLLQILQGRTVIIIAHRLSTIRSADRIIV 679
Query: 1044 LQQGKVAEIGSHEQLLRKENGIYKQLIRLQQ 1074
L QGK+ E GSHE+LL + G+Y +L + Q+
Sbjct: 680 LDQGKIVEQGSHEELLA-QGGLYARLYQQQE 709
|
Length = 709 |
| >gnl|CDD|213221 cd03254, ABCC_Glucan_exporter_like, ATP-binding cassette domain of glucan transporter and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 312 bits (801), Expect = 3e-99
Identities = 119/229 (51%), Positives = 171/229 (74%), Gaps = 2/229 (0%)
Query: 833 GNIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISG 892
G IE NV+F Y + +++N + G ++A+VG +G+GK+T+I+L+MRFYDP G
Sbjct: 1 GEIEFENVNFSY--DEKKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKG 58
Query: 893 TVLIDGYDIRTLNLRSLRRKIGLVQQEPALFSTTIYENIKYGNEDASEIELMKATKAANA 952
+LIDG DIR ++ +SLR IG+V Q+ LFS TI ENI+ G +A++ E+++A K A A
Sbjct: 59 QILIDGIDIRDISRKSLRSMIGVVLQDTFLFSGTIMENIRLGRPNATDEEVIEAAKEAGA 118
Query: 953 HGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLI 1012
H FI ++P GY + +G+ G LS G++Q +AIARA+L++P IL+LDEATS +DT +E LI
Sbjct: 119 HDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPKILILDEATSNIDTETEKLI 178
Query: 1013 QEALDKLMEGRTTIMVAHRLSTIRNADKIAVLQQGKVAEIGSHEQLLRK 1061
QEAL+KLM+GRT+I++AHRLSTI+NADKI VL GK+ E G+H++LL K
Sbjct: 179 QEALEKLMKGRTSIIIAHRLSTIKNADKILVLDDGKIIEEGTHDELLAK 227
|
Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 229 |
| >gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Score = 334 bits (857), Expect = 4e-96
Identities = 255/928 (27%), Positives = 424/928 (45%), Gaps = 176/928 (18%)
Query: 313 VIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATS 372
V++ +K H FV LPD Y+T VG ++LSGGQKQRI+IARA++RNPKIL+LDEATS
Sbjct: 549 VVDVSKKVLIHDFVSALPDKYETLVGSNASKLSGGQKQRISIARAIIRNPKILILDEATS 608
Query: 373 ALDAESELIVQRALEKIM--SNRTTIVVAHRLSTVRDVDTIMVLKNGQ------------ 418
+LD +SE +VQ+ + + NR TI++AHRLST+R +TI VL N +
Sbjct: 609 SLDNKSEYLVQKTINNLKGNENRITIIIAHRLSTIRYANTIFVLSNRERGSTVDVDIIGE 668
Query: 419 -----------------------------------VVESGTHVDLI-SKGGEYAALVNLQ 442
++E GTH L+ +K G Y ++N Q
Sbjct: 669 DPTKDNKENNNKNNKDDNNNNNNNNNNKINNAGSYIIEQGTHDALMKNKNGIYYTMINNQ 728
Query: 443 --SSEHLSNP--------SSICYSGSSRYSSFRDFPSSRRYDVEFESSKRRELQSSDQS- 491
SS+ SN S Y S R + + +++ E S+K+ S + +
Sbjct: 729 KVSSKKSSNNDNDKDSDMKSSAYKDSERGYDPDEMNGNSKHENESASNKKSCKMSDENAS 788
Query: 492 --------------FAPSPSIWELLKLNAAE-WPY---AVLGSVGAILAGMEAPLFALGI 533
F P L++ E + Y + ++ ++AG P+FAL
Sbjct: 789 ENNAGGKLPFLRNLFKRKPKAPNNLRIVYREIFSYKKDVTIIALSILVAGGLYPVFALLY 848
Query: 534 THILTAFYSPHDSQIKRVVDQVALIFVGLAVVTIPVYLLQHYFYTLMGEHLTARVRLSMF 593
++ + + ++ ++ +L + +A+ L++Y+ ++GE + ++ +F
Sbjct: 849 AKYVSTLFD--FANLEANSNKYSLYILVIAIAMFISETLKNYYNNVIGEKVEKTMKRRLF 906
Query: 594 SAILSNEIGWFDLDENNTGLLISTLAADATLVRSALADRLSIIVQNVALTVTAFVIAFIL 653
IL EI +FD D++ GLL + + D L+++ L + + I + L + + V++F
Sbjct: 907 ENILYQEISFFDQDKHAPGLLSAHINRDVHLLKTGLVNNIVIFTHFIVLFLVSMVMSFYF 966
Query: 654 SWRLAAVVAASLPLLIGAFVAEQLFLKG----------------FGGDYNRAYSRATSVA 697
+AAV+ + + + F + D + + + +
Sbjct: 967 CPIVAAVLTGTYFIFMRVFAIRARLTANKDVEKKEINQPGTVFAYNSD-DEIFKDPSFLI 1025
Query: 698 REAIANIRTVAAYGIEKRISIQFASELSQPNKQALLRGHISGFGYGVSQLLSLCSYALGL 757
+EA N+ TV YG+E + NK + ++ +G SQ L +
Sbjct: 1026 QEAFYNMNTVIIYGLEDYFCNLIEKAIDYSNKGQKRKTLVNSMLWGFSQSAQLFINSFAY 1085
Query: 758 WYASVLIKQKGSNFGDIMKSFMVLIITALAVAETLALAPDIVKGSQALGPVFGILYRKTA 817
W+ S LI++ D MKS + T + ++L D + + ++ RK+
Sbjct: 1086 WFGSFLIRRGTILVDDFMKSLFTFLFTGSYAGKLMSLKGDSENAKLSFEKYYPLIIRKSN 1145
Query: 818 I-------------------------------QPDDPA---------SKEVTEIKGNI-- 835
I +P+ P SK+ T I G
Sbjct: 1146 IDVRDNGGIRIKNKNDIKGKIEIMDVNFRYISRPNVPIYKDLTFSCDSKKTTAIVGETGS 1205
Query: 836 -------------ELRN---VSFKYPVRPDITIF------ENLNLKVSAGRSLAVVGQSG 873
+L+N + FK D+T E N+ + ++ + G
Sbjct: 1206 GKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQDYQGDEEQNVGMKNVNEFSLTKEGG 1265
Query: 874 SGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRKIGLVQQEPALFSTTIYENIKY 933
SG+ + + F + SG +L+DG DI NL+ LR +V QEP LF+ +IYENIK+
Sbjct: 1266 SGEDSTV-----FKN--SGKILLDGVDICDYNLKDLRNLFSIVSQEPMLFNMSIYENIKF 1318
Query: 934 GNEDASEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPS 993
G EDA+ ++ +A K A FI +P Y ++VG G LSGGQKQR+AIARA+L+ P
Sbjct: 1319 GKEDATREDVKRACKFAAIDEFIESLPNKYDTNVGPYGKSLSGGQKQRIAIARALLREPK 1378
Query: 994 ILLLDEATSALDTASENLIQEALDKLME--GRTTIMVAHRLSTIRNADKIAVLQQGK--- 1048
ILLLDEATS+LD+ SE LI++ + + + +T I +AHR+++I+ +DKI V
Sbjct: 1379 ILLLDEATSSLDSNSEKLIEKTIVDIKDKADKTIITIAHRIASIKRSDKIVVFNNPDRTG 1438
Query: 1049 --VAEIGSHEQLLRKENGIYKQLIRLQQ 1074
V G+HE+LL ++G+YK+ ++L +
Sbjct: 1439 SFVQAHGTHEELLSVQDGVYKKYVKLAK 1466
|
Length = 1466 |
| >gnl|CDD|183016 PRK11176, PRK11176, lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Score = 306 bits (787), Expect = 2e-92
Identities = 163/437 (37%), Positives = 245/437 (56%), Gaps = 19/437 (4%)
Query: 17 FAVGFTSVWQLTLLTLAVVPLIAVAGGAYTITMSTLSEKGEAAYGEAGKVAEEIISQVRA 76
F + F WQL+L+ + + P++++A + +S+ + G+ AE+++ +
Sbjct: 157 FIMMFYYSWQLSLILIVIAPIVSIAIRVVSKRFRNISKNMQNTMGQVTTSAEQMLKGHKE 216
Query: 77 VYAFVGEAKAIESYSHSLKEALKQGKKSGVAKGIGVGLTYGLLFCAWALLLWYAGI-LVR 135
V F G+ + + +QG K A I + + A A +L+ A V
Sbjct: 217 VLIFGGQEVETKRFDKVSNRMRQQGMKMVSASSISDPIIQLIASLALAFVLYAASFPSVM 276
Query: 136 HGDTNGGKAFTTIINVIFSG-FALGQAAPNL----AAIAKGKAAAANIISIIKENSHSSE 190
T G I V+FS AL + +L A +G AA + +I+ E
Sbjct: 277 DTLTAG------TITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAIL-----DLE 325
Query: 191 RPGDDG-ITLPKLAGQIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTI 249
+ D+G + + G IEF V F YP + N+NF + AGKT A VG SGSGKSTI
Sbjct: 326 QEKDEGKRVIERAKGDIEFRNVTFTYPGKEVPALRNINFKIPAGKTVALVGRSGSGKSTI 385
Query: 250 ISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNILLGKEDA- 308
+++ R Y+ G+ILLDGHDL+ L LR Q+ LVSQ LF +IANNI + +
Sbjct: 386 ANLLTRFYDIDEGEILLDGHDLRDYTLASLRNQVALVSQNVHLFNDTIANNIAYARTEQY 445
Query: 309 SMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLD 368
S +++ EAA+ A A F+ + +G T +GE G LSGGQ+QRIAIARA+LR+ IL+LD
Sbjct: 446 SREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLRDSPILILD 505
Query: 369 EATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRDVDTIMVLKNGQVVESGTHVDL 428
EATSALD ESE +Q AL+++ NRT++V+AHRLST+ D I+V+++G++VE GTH +L
Sbjct: 506 EATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEKADEILVVEDGEIVERGTHAEL 565
Query: 429 ISKGGEYAALVNLQSSE 445
+++ G YA L +Q +
Sbjct: 566 LAQNGVYAQLHKMQFGQ 582
|
Length = 582 |
| >gnl|CDD|184214 PRK13657, PRK13657, cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 303 bits (777), Expect = 6e-91
Identities = 121/256 (47%), Positives = 182/256 (71%), Gaps = 3/256 (1%)
Query: 187 HSSERPGDDGITLPKLAGQIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGK 246
+ P I L ++ G +EF +V F+Y + V +++F G+T A VGP+G+GK
Sbjct: 318 DVRDPP--GAIDLGRVKGAVEFDDVSFSYDNSRQGVE-DVSFEAKPGQTVAIVGPTGAGK 374
Query: 247 STIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNILLGKE 306
ST+I+++QR+++P SG+IL+DG D++++ LR + +V Q+ LF SI +NI +G+
Sbjct: 375 STLINLLQRVFDPQSGRILIDGTDIRTVTRASLRRNIAVVFQDAGLFNRSIEDNIRVGRP 434
Query: 307 DASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILL 366
DA+ + + AA+ A AH F+E PDGY T VGE G QLSGG++QR+AIARA+L++P IL+
Sbjct: 435 DATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQRLAIARALLKDPPILI 494
Query: 367 LDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRDVDTIMVLKNGQVVESGTHV 426
LDEATSALD E+E V+ AL+++M RTT ++AHRLSTVR+ D I+V NG+VVESG+
Sbjct: 495 LDEATSALDVETEAKVKAALDELMKGRTTFIIAHRLSTVRNADRILVFDNGRVVESGSFD 554
Query: 427 DLISKGGEYAALVNLQ 442
+L+++GG +AAL+ Q
Sbjct: 555 ELVARGGRFAALLRAQ 570
|
Length = 588 |
| >gnl|CDD|184214 PRK13657, PRK13657, cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 297 bits (763), Expect = 6e-89
Identities = 182/554 (32%), Positives = 286/554 (51%), Gaps = 57/554 (10%)
Query: 550 RVVDQVA---------LIFVGLAVVTIPVYLLQHYFYTLMGEHLTARVRLSM----FSAI 596
R++D ++ + G + I +L + L R RL++ F I
Sbjct: 44 RIIDAISGKGDIFPLLAAWAGFGLFNIIAGVL----VARHADRLAHRRRLAVLTEYFERI 99
Query: 597 LSNEIGWFDLDENNTGLLISTL--AADA--TLVRSALADRLSIIVQNVALTVTAFVIAFI 652
+ + W + +G + TL DA L + + L+ +V V L A +
Sbjct: 100 IQLPLAWHS--QRGSGRALHTLLRGTDALFGLWLEFMREHLATLVALVVLLPLALFM--- 154
Query: 653 LSWRLAAV--VAASLPLLIGAFVAEQLFLKGFGGDYNRAYSRATSVAREAIANIRTVAAY 710
+WRL+ V V + LI V + K Y + +AI N+ V +Y
Sbjct: 155 -NWRLSLVLVVLGIVYTLITTLVMRKT--KDGQAAVEEHYHDLFAHVSDAIGNVSVVQSY 211
Query: 711 ---GIEKRISIQFASEL--SQ-P--NKQALLRGHISGFGYGVSQLLSLCSYALGLWYASV 762
E + A L +Q P + AL S S + L LG
Sbjct: 212 NRIEAETQALRDIADNLLAAQMPVLSWWALA----SVLNRAASTITMLAILVLGAA---- 263
Query: 763 LIKQKGSNFGDIMK--SFMVLIITALAVAETLALAPDIVKGSQALGPVFGILYRKTAIQP 820
L+++ G+++ F L+I L + +A + + L F + ++
Sbjct: 264 LVQKGQLRVGEVVAFVGFATLLIGRLD--QVVAFINQVFMAAPKLEEFFEVEDAVPDVR- 320
Query: 821 DDPASKEVTEIKGNIELRNVSFKYP-VRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTV 879
D P + ++ +KG +E +VSF Y R + E+++ + G+++A+VG +G+GKST+
Sbjct: 321 DPPGAIDLGRVKGAVEFDDVSFSYDNSRQGV---EDVSFEAKPGQTVAIVGPTGAGKSTL 377
Query: 880 ISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRKIGLVQQEPALFSTTIYENIKYGNEDAS 939
I+L+ R +DP SG +LIDG DIRT+ SLRR I +V Q+ LF+ +I +NI+ G DA+
Sbjct: 378 INLLQRVFDPQSGRILIDGTDIRTVTRASLRRNIAVVFQDAGLFNRSIEDNIRVGRPDAT 437
Query: 940 EIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDE 999
+ E+ A + A AH FI R P+GY + VG+RG QLSGG++QR+AIARA+LK+P IL+LDE
Sbjct: 438 DEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQRLAIARALLKDPPILILDE 497
Query: 1000 ATSALDTASENLIQEALDKLMEGRTTIMVAHRLSTIRNADKIAVLQQGKVAEIGSHEQLL 1059
ATSALD +E ++ ALD+LM+GRTT ++AHRLST+RNAD+I V G+V E GS ++L+
Sbjct: 498 ATSALDVETEAKVKAALDELMKGRTTFIIAHRLSTVRNADRILVFDNGRVVESGSFDELV 557
Query: 1060 RKENGIYKQLIRLQ 1073
+ G + L+R Q
Sbjct: 558 AR-GGRFAALLRAQ 570
|
Length = 588 |
| >gnl|CDD|233596 TIGR01846, type_I_sec_HlyB, type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Score = 296 bits (760), Expect = 2e-87
Identities = 149/344 (43%), Positives = 194/344 (56%), Gaps = 12/344 (3%)
Query: 103 KSGVAKGIGVGLTYGLLFCAWALLLWYAGILVRHGDTNGGKAFTTIINVIFSGFALGQAA 162
G G + L L F A+LLW+ LV G + G+ V F+ A
Sbjct: 359 NLGNIAGQAIELIQKLTF---AILLWFGAHLVIGGALSPGQL------VAFNMLAGRVTQ 409
Query: 163 P--NLAAIAKGKAAAANIISIIKENSHSSERPGDDG-ITLPKLAGQIEFSEVCFAYPSRP 219
P LA + + + + + +S P G LP+L G I F + F Y
Sbjct: 410 PVLRLAQLWQDFQQTGIALERLGDILNSPTEPRSAGLAALPELRGAITFENIRFRYAPDS 469
Query: 220 HMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWL 279
V NLN + G+ VGPSGSGKST+ ++QRLY P G++L+DG DL WL
Sbjct: 470 PEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDLAIADPAWL 529
Query: 280 REQMGLVSQEPALFATSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGE 339
R QMG+V QE LF+ SI +NI L A + VI AAK A AH F+ LP GY T+VGE
Sbjct: 530 RRQMGVVLQENVLFSRSIRDNIALCNPGAPFEHVIHAAKLAGAHDFISELPQGYNTEVGE 589
Query: 340 GGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVA 399
G LSGGQ+QRIAIARA++ NP+IL+ DEATSALD ESE ++ R + +I RT I++A
Sbjct: 590 KGANLSGGQRQRIAIARALVGNPRILIFDEATSALDYESEALIMRNMREICRGRTVIIIA 649
Query: 400 HRLSTVRDVDTIMVLKNGQVVESGTHVDLISKGGEYAALVNLQS 443
HRLSTVR D I+VL+ GQ+ ESG H +L++ G YA L QS
Sbjct: 650 HRLSTVRACDRIIVLEKGQIAESGRHEELLALQGLYARLWQQQS 693
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 694 |
| >gnl|CDD|183016 PRK11176, PRK11176, lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Score = 288 bits (739), Expect = 1e-85
Identities = 169/499 (33%), Positives = 283/499 (56%), Gaps = 32/499 (6%)
Query: 588 VRLSMFSAILSNEIGWFDLDENNTGLLISTLAADATLVRSALADRLSIIVQNVALTVTAF 647
+R +F ++ + +FD + +TG L+S + D+ V S+ + L +V+ A + F
Sbjct: 100 MRRRLFGHMMGMPVSFFD--KQSTGTLLSRITYDSEQVASSSSGALITVVREGASIIGLF 157
Query: 648 VIAFILSWRLAAVVAASLPLLIGAFVAEQLFLKGF---GGDYNRAYSRATSVAREAIANI 704
++ F SW+L+ ++ P++ +A ++ K F + + T+ A + +
Sbjct: 158 IMMFYYSWQLSLILIVIAPIV---SIAIRVVSKRFRNISKNMQNTMGQVTTSAEQMLKGH 214
Query: 705 RTVAAYGIEKRISIQFASELSQPNKQALLRGHISGFGYGVSQLLSLCSYALGLWYASVLI 764
+ V +G ++ + +F ++ +Q + S + QL++ S AL A VL
Sbjct: 215 KEVLIFGGQEVETKRFDKVSNRMRQQGMKMVSASSISDPIIQLIA--SLAL----AFVLY 268
Query: 765 KQKGSNFGDIMK-----SFMVLIITALAVAETL----ALAPDIVKGSQALGPVFGILYRK 815
++F +M + V+ + +A+ L + +G A +F IL +
Sbjct: 269 ---AASFPSVMDTLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDLE 325
Query: 816 TAIQPDDPASKEVTEIKGNIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSG 875
Q D + + KG+IE RNV+F YP + ++ N+N K+ AG+++A+VG+SGSG
Sbjct: 326 ---QEKDEGKRVIERAKGDIEFRNVTFTYPGK-EVPALRNINFKIPAGKTVALVGRSGSG 381
Query: 876 KSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRKIGLVQQEPALFSTTIYENIKYGN 935
KST+ +L+ RFYD G +L+DG+D+R L SLR ++ LV Q LF+ TI NI Y
Sbjct: 382 KSTIANLLTRFYDIDEGEILLDGHDLRDYTLASLRNQVALVSQNVHLFNDTIANNIAYAR 441
Query: 936 EDA-SEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSI 994
+ S ++ +A + A A FI++M G + +G+ GV LSGGQ+QR+AIARA+L++ I
Sbjct: 442 TEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLRDSPI 501
Query: 995 LLLDEATSALDTASENLIQEALDKLMEGRTTIMVAHRLSTIRNADKIAVLQQGKVAEIGS 1054
L+LDEATSALDT SE IQ ALD+L + RT++++AHRLSTI AD+I V++ G++ E G+
Sbjct: 502 LILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEKADEILVVEDGEIVERGT 561
Query: 1055 HEQLLRKENGIYKQLIRLQ 1073
H +LL + NG+Y QL ++Q
Sbjct: 562 HAELLAQ-NGVYAQLHKMQ 579
|
Length = 582 |
| >gnl|CDD|213219 cd03252, ABCC_Hemolysin, ATP-binding cassette domain of hemolysin B, subfamily C | Back alignment and domain information |
|---|
Score = 276 bits (707), Expect = 1e-85
Identities = 119/237 (50%), Positives = 161/237 (67%)
Query: 206 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKIL 265
I F V F Y ++ +N++ + G+ VG SGSGKST+ ++QR Y P +G++L
Sbjct: 1 ITFEHVRFRYKPDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVL 60
Query: 266 LDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNILLGKEDASMDRVIEAAKAANAHSF 325
+DGHDL WLR Q+G+V QE LF SI +NI L SM+RVIEAAK A AH F
Sbjct: 61 VDGHDLALADPAWLRRQVGVVLQENVLFNRSIRDNIALADPGMSMERVIEAAKLAGAHDF 120
Query: 326 VEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRA 385
+ LP+GY T VGE G LSGGQ+QRIAIARA++ NP+IL+ DEATSALD ESE + R
Sbjct: 121 ISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPRILIFDEATSALDYESEHAIMRN 180
Query: 386 LEKIMSNRTTIVVAHRLSTVRDVDTIMVLKNGQVVESGTHVDLISKGGEYAALVNLQ 442
+ I + RT I++AHRLSTV++ D I+V++ G++VE G+H +L+++ G YA L LQ
Sbjct: 181 MHDICAGRTVIIIAHRLSTVKNADRIIVMEKGRIVEQGSHDELLAENGLYAYLYQLQ 237
|
The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. Length = 237 |
| >gnl|CDD|227590 COG5265, ATM1, ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 285 bits (732), Expect = 1e-85
Identities = 167/472 (35%), Positives = 252/472 (53%), Gaps = 56/472 (11%)
Query: 623 TLVRSALADRLSIIVQNVALTVTAFVIAFILSWRLAAVVAASLPLLIGAFVAEQLFLKGF 682
T++R L +I+ V +++ A ++ + W A ++ L + V + F
Sbjct: 54 TILRWIL---FNILPTLVEISLVAVILWRVYGWWFALTTLVTVILYLLFTVIVSDWRTDF 110
Query: 683 GGDYNRAYSRATSVAREAIANIRTVAAYGIEKRISIQFASELSQPNKQALLRGHISGFGY 742
N A S A + A +++ N TV +G E+ ++++ L K A+ + H+S
Sbjct: 111 RRLMNNADSDANAKAIDSLLNFETVKYFGNEEYEAVRYDHALETYEKAAI-KVHVS---- 165
Query: 743 GVSQLLSLCSYALGLWYASVLIKQKGSNFGDIMKSFMVLIITALAVAE------TLALAP 796
LL L +++ L ++ ++AL V E L
Sbjct: 166 ----LLVLNFGQ-TAIFSTGLRV--------------MMTMSALGVEEGQLTVGDLVNVN 206
Query: 797 DIVKGSQALGPVFGILYR-----KTAIQ------------PDDPASKEVTE-IKGNIELR 838
++ G YR T ++ D P + + G +
Sbjct: 207 ALLFQLSIPLNFLGFSYREIRQALTDMEKMFDLLDVEAEVSDAPDAPPLWPVRLGAVAFI 266
Query: 839 NVSFKY-PVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLID 897
NVSF Y P RP I ++ + G+++A+VG+SG+GKST++ L+ RFYD SG++ ID
Sbjct: 267 NVSFAYDPRRP---ILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSGSITID 323
Query: 898 GYDIRTLNLRSLRRKIGLVQQEPALFSTTIYENIKYGNEDASEIELMKATKAANAHGFIS 957
G DIR + +SLRR IG+V Q+ LF+ TI NIKYG DA+ E+ A +AA H FI
Sbjct: 324 GQDIRDVTQQSLRRAIGIVPQDTVLFNDTIAYNIKYGRPDATAEEVGAAAEAAQIHDFIQ 383
Query: 958 RMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEALD 1017
+PEGY + VG+RG++LSGG+KQRVAIAR ILKNP IL+LDEATSALDT +E IQ AL
Sbjct: 384 SLPEGYDTGVGERGLKLSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQAALR 443
Query: 1018 KLMEGRTTIMVAHRLSTIRNADKIAVLQQGKVAEIGSHEQLLRKENGIYKQL 1069
++ GRTT+++AHRLSTI +AD+I VL G++ E G+HE+LL G+Y ++
Sbjct: 444 EVSAGRTTLVIAHRLSTIIDADEIIVLDNGRIVERGTHEELLAA-GGLYAEM 494
|
Length = 497 |
| >gnl|CDD|213215 cd03248, ABCC_TAP, ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C | Back alignment and domain information |
|---|
Score = 270 bits (692), Expect = 1e-83
Identities = 113/219 (51%), Positives = 159/219 (72%), Gaps = 1/219 (0%)
Query: 202 LAGQIEFSEVCFAYPSRP-HMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPT 260
L G ++F V FAYP+RP +V ++++F++ G+ A VGPSGSGKST++++++ Y+P
Sbjct: 8 LKGIVKFQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQ 67
Query: 261 SGKILLDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNILLGKEDASMDRVIEAAKAA 320
G++LLDG + + K+L ++ LV QEP LFA S+ +NI G + S + V EAA+ A
Sbjct: 68 GGQVLLDGKPISQYEHKYLHSKVSLVGQEPVLFARSLQDNIAYGLQSCSFECVKEAAQKA 127
Query: 321 NAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESEL 380
+AHSF+ L GY T+VGE G+QLSGGQKQR+AIARA++RNP++L+LDEATSALDAESE
Sbjct: 128 HAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARALIRNPQVLILDEATSALDAESEQ 187
Query: 381 IVQRALEKIMSNRTTIVVAHRLSTVRDVDTIMVLKNGQV 419
VQ+AL RT +V+AHRLSTV D I+VL G++
Sbjct: 188 QVQQALYDWPERRTVLVIAHRLSTVERADQILVLDGGRI 226
|
TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. Length = 226 |
| >gnl|CDD|213219 cd03252, ABCC_Hemolysin, ATP-binding cassette domain of hemolysin B, subfamily C | Back alignment and domain information |
|---|
Score = 267 bits (685), Expect = 1e-82
Identities = 113/240 (47%), Positives = 168/240 (70%), Gaps = 4/240 (1%)
Query: 835 IELRNVSFKYPVRPD-ITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGT 893
I +V F+Y +PD I +N++L++ G + +VG+SGSGKST+ L+ RFY P +G
Sbjct: 1 ITFEHVRFRY--KPDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGR 58
Query: 894 VLIDGYDIRTLNLRSLRRKIGLVQQEPALFSTTIYENIKYGNEDASEIELMKATKAANAH 953
VL+DG+D+ + LRR++G+V QE LF+ +I +NI + S +++A K A AH
Sbjct: 59 VLVDGHDLALADPAWLRRQVGVVLQENVLFNRSIRDNIALADPGMSMERVIEAAKLAGAH 118
Query: 954 GFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQ 1013
FIS +PEGY + VG++G LSGGQ+QR+AIARA++ NP IL+ DEATSALD SE+ I
Sbjct: 119 DFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPRILIFDEATSALDYESEHAIM 178
Query: 1014 EALDKLMEGRTTIMVAHRLSTIRNADKIAVLQQGKVAEIGSHEQLLRKENGIYKQLIRLQ 1073
+ + GRT I++AHRLST++NAD+I V+++G++ E GSH++LL + NG+Y L +LQ
Sbjct: 179 RNMHDICAGRTVIIIAHRLSTVKNADRIIVMEKGRIVEQGSHDELLAE-NGLYAYLYQLQ 237
|
The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. Length = 237 |
| >gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug resistance protein-like transporters | Back alignment and domain information |
|---|
Score = 260 bits (666), Expect = 1e-80
Identities = 101/214 (47%), Positives = 133/214 (62%), Gaps = 43/214 (20%)
Query: 835 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTV 894
IE +NVSF YP RP + ++++L + G +A+VG SGSGKST++ L++R YDP SG +
Sbjct: 1 IEFKNVSFSYPGRPK-PVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEI 59
Query: 895 LIDGYDIRTLNLRSLRRKIGLVQQEPALFSTTIYENIKYGNEDASEIELMKATKAANAHG 954
LIDG D+R L+L SLR+ I V Q+P LFS TI ENI
Sbjct: 60 LIDGVDLRDLDLESLRKNIAYVPQDPFLFSGTIRENI----------------------- 96
Query: 955 FISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQE 1014
LSGGQ+QR+AIARA+L++P IL+LDEATSALD +E LI E
Sbjct: 97 -------------------LSGGQRQRIAIARALLRDPPILILDEATSALDPETEALILE 137
Query: 1015 ALDKLMEGRTTIMVAHRLSTIRNADKIAVLQQGK 1048
AL L +G+T I++AHRLSTIR+AD+I VL G+
Sbjct: 138 ALRALAKGKTVIVIAHRLSTIRDADRIIVLDDGR 171
|
The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 171 |
| >gnl|CDD|233596 TIGR01846, type_I_sec_HlyB, type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Score = 276 bits (707), Expect = 4e-80
Identities = 171/528 (32%), Positives = 274/528 (51%), Gaps = 21/528 (3%)
Query: 555 VALIFVGLAVVTIPVYLLQHYFYTLMGEHLTARVRLSM----FSAILSNEIGWFDLDENN 610
+AL + +A+ + L+ Y + HLT+R+ + + + +L +G+F+
Sbjct: 181 LALAMLAVAIFEPALGGLRTYLFA----HLTSRIDVELGARLYRHLLGLPLGYFE--SRR 234
Query: 611 TGLLISTLAADATLVRSALADRLSIIVQNVALTVTAFVIAFILSWRLAAVVAASLP--LL 668
G ++ + +R+ L +V ++ V + F S L VV SL L
Sbjct: 235 VGDTVARVRELEQ-IRNFLTGSALTVVLDLLFVVVFLAVMFFYSPTLTGVVIGSLVCYAL 293
Query: 669 IGAFVAEQLFLKGFGGDYNRAYSRATSVAREAIANIRTVAAYGIEKRISIQFASELSQPN 728
+ FV L K + R+ + ATS E++ I T+ A E + ++ +L+
Sbjct: 294 LSVFVGPIL-RKRVEDKFERS-AAATSFLVESVTGIETIKATATEPQFQNRWDRQLAAYV 351
Query: 729 KQALLRGHISGFGYGVSQLLSLCSYALGLWYASVLIKQKGSNFGDIMKSFMVLIITALAV 788
+ ++ +L+ ++A+ LW+ + L+ + G ++ M+ V
Sbjct: 352 AASFRVTNLGNIAGQAIELIQKLTFAILLWFGAHLVIGGALSPGQLVAFNMLAGRVTQPV 411
Query: 789 AETLALAPDIVKGSQALGPVFGILYRKTAIQPDDPASKEVTEIKGNIELRNVSFKYPVRP 848
L D + AL + IL T + A+ + E++G I N+ F+Y P
Sbjct: 412 LRLAQLWQDFQQTGIALERLGDILNSPTEPRSAGLAA--LPELRGAITFENIRFRY--AP 467
Query: 849 DI-TIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLR 907
D + NLNL + G + +VG SGSGKST+ L+ R Y P G VL+DG D+ +
Sbjct: 468 DSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDLAIADPA 527
Query: 908 SLRRKIGLVQQEPALFSTTIYENIKYGNEDASEIELMKATKAANAHGFISRMPEGYQSHV 967
LRR++G+V QE LFS +I +NI N A ++ A K A AH FIS +P+GY + V
Sbjct: 528 WLRRQMGVVLQENVLFSRSIRDNIALCNPGAPFEHVIHAAKLAGAHDFISELPQGYNTEV 587
Query: 968 GDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLMEGRTTIM 1027
G++G LSGGQ+QR+AIARA++ NP IL+ DEATSALD SE LI + ++ GRT I+
Sbjct: 588 GEKGANLSGGQRQRIAIARALVGNPRILIFDEATSALDYESEALIMRNMREICRGRTVII 647
Query: 1028 VAHRLSTIRNADKIAVLQQGKVAEIGSHEQLLRKENGIYKQLIRLQQD 1075
+AHRLST+R D+I VL++G++AE G HE+LL + G+Y +L + Q
Sbjct: 648 IAHRLSTVRACDRIIVLEKGQIAESGRHEELLALQ-GLYARLWQQQSG 694
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 694 |
| >gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug resistance protein-like transporters | Back alignment and domain information |
|---|
Score = 256 bits (658), Expect = 1e-79
Identities = 94/213 (44%), Positives = 130/213 (61%), Gaps = 42/213 (19%)
Query: 206 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKIL 265
IEF V F+YP RP V ++++ ++ G+ A VGPSGSGKST++ ++ RLY+PTSG+IL
Sbjct: 1 IEFKNVSFSYPGRPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEIL 60
Query: 266 LDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNILLGKEDASMDRVIEAAKAANAHSF 325
+DG DL+ L L+ LR+ + V Q+P LF+ +I NI
Sbjct: 61 IDGVDLRDLDLESLRKNIAYVPQDPFLFSGTIRENI------------------------ 96
Query: 326 VEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRA 385
LSGGQ+QRIAIARA+LR+P IL+LDEATSALD E+E ++ A
Sbjct: 97 ------------------LSGGQRQRIAIARALLRDPPILILDEATSALDPETEALILEA 138
Query: 386 LEKIMSNRTTIVVAHRLSTVRDVDTIMVLKNGQ 418
L + +T IV+AHRLST+RD D I+VL +G+
Sbjct: 139 LRALAKGKTVIVIAHRLSTIRDADRIIVLDDGR 171
|
The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 171 |
| >gnl|CDD|227590 COG5265, ATM1, ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 260 bits (667), Expect = 1e-76
Identities = 120/250 (48%), Positives = 168/250 (67%), Gaps = 7/250 (2%)
Query: 194 DDGITLPKL----AGQIEFSEVCFAY-PSRPHMVFENLNFSVDAGKTFAFVGPSGSGKST 248
D P L G + F V FAY P RP + ++F++ GKT A VG SG+GKST
Sbjct: 247 SDAPDAPPLWPVRLGAVAFINVSFAYDPRRP--ILNGISFTIPLGKTVAIVGESGAGKST 304
Query: 249 IISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNILLGKEDA 308
I+ ++ R Y+ SG I +DG D++ + + LR +G+V Q+ LF +IA NI G+ DA
Sbjct: 305 ILRLLFRFYDVNSGSITIDGQDIRDVTQQSLRRAIGIVPQDTVLFNDTIAYNIKYGRPDA 364
Query: 309 SMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLD 368
+ + V AA+AA H F++ LP+GY T VGE G +LSGG+KQR+AIAR +L+NP IL+LD
Sbjct: 365 TAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGLKLSGGEKQRVAIARTILKNPPILILD 424
Query: 369 EATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRDVDTIMVLKNGQVVESGTHVDL 428
EATSALD +E +Q AL ++ + RTT+V+AHRLST+ D D I+VL NG++VE GTH +L
Sbjct: 425 EATSALDTHTEQAIQAALREVSAGRTTLVIAHRLSTIIDADEIIVLDNGRIVERGTHEEL 484
Query: 429 ISKGGEYAAL 438
++ GG YA +
Sbjct: 485 LAAGGLYAEM 494
|
Length = 497 |
| >gnl|CDD|213215 cd03248, ABCC_TAP, ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C | Back alignment and domain information |
|---|
Score = 245 bits (627), Expect = 1e-74
Identities = 105/221 (47%), Positives = 150/221 (67%)
Query: 829 TEIKGNIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYD 888
+KG ++ +NV+F YP RPD + ++++ + G A+VG SGSGKSTV++L+ FY
Sbjct: 6 DHLKGIVKFQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQ 65
Query: 889 PISGTVLIDGYDIRTLNLRSLRRKIGLVQQEPALFSTTIYENIKYGNEDASEIELMKATK 948
P G VL+DG I + L K+ LV QEP LF+ ++ +NI YG + S + +A +
Sbjct: 66 PQGGQVLLDGKPISQYEHKYLHSKVSLVGQEPVLFARSLQDNIAYGLQSCSFECVKEAAQ 125
Query: 949 AANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTAS 1008
A+AH FIS + GY + VG++G QLSGGQKQRVAIARA+++NP +L+LDEATSALD S
Sbjct: 126 KAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARALIRNPQVLILDEATSALDAES 185
Query: 1009 ENLIQEALDKLMEGRTTIMVAHRLSTIRNADKIAVLQQGKV 1049
E +Q+AL E RT +++AHRLST+ AD+I VL G++
Sbjct: 186 EQQVQQALYDWPERRTVLVIAHRLSTVERADQILVLDGGRI 226
|
TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. Length = 226 |
| >gnl|CDD|130260 TIGR01192, chvA, glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Score = 256 bits (655), Expect = 5e-74
Identities = 116/258 (44%), Positives = 176/258 (68%), Gaps = 2/258 (0%)
Query: 182 IKENSHSSERPGDDGITLPKLAGQIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGP 241
++++ E P D LP + G +EF + F + + VF +++F AG+T A VGP
Sbjct: 312 LEDSVFQREEPADAP-ELPNVKGAVEFRHITFEFANSSQGVF-DVSFEAKAGQTVAIVGP 369
Query: 242 SGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNI 301
+G+GK+T+I+++QR+Y+PT G+IL+DG D+ ++ + LR+ + V Q+ LF SI NI
Sbjct: 370 TGAGKTTLINLLQRVYDPTVGQILIDGIDINTVTRESLRKSIATVFQDAGLFNRSIRENI 429
Query: 302 LLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRN 361
LG+E A+ + V EAAKAA AH F+ +GY T VGE G +LSGG++QR+AIARA+L+N
Sbjct: 430 RLGREGATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGERQRLAIARAILKN 489
Query: 362 PKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRDVDTIMVLKNGQVVE 421
IL+LDEATSALD E+E V+ A++ + NRTT ++AHRLSTVR+ D ++ L G+++E
Sbjct: 490 APILVLDEATSALDVETEARVKNAIDALRKNRTTFIIAHRLSTVRNADLVLFLDQGRLIE 549
Query: 422 SGTHVDLISKGGEYAALV 439
G+ +LI K G + L+
Sbjct: 550 KGSFQELIQKDGRFYKLL 567
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 585 |
| >gnl|CDD|213212 cd03245, ABCC_bacteriocin_exporters, ATP-binding cassette domain of bacteriocin exporters, subfamily C | Back alignment and domain information |
|---|
Score = 238 bits (609), Expect = 5e-72
Identities = 94/217 (43%), Positives = 140/217 (64%), Gaps = 1/217 (0%)
Query: 833 GNIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISG 892
G IE RNVSF YP + + +N++L + AG +A++G+ GSGKST++ L+ Y P SG
Sbjct: 1 GRIEFRNVSFSYPNQEIPAL-DNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSG 59
Query: 893 TVLIDGYDIRTLNLRSLRRKIGLVQQEPALFSTTIYENIKYGNEDASEIELMKATKAANA 952
+VL+DG DIR L+ LRR IG V Q+ LF T+ +NI G A + +++A + A
Sbjct: 60 SVLLDGTDIRQLDPADLRRNIGYVPQDVTLFYGTLRDNITLGAPLADDERILRAAELAGV 119
Query: 953 HGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLI 1012
F+++ P G +G+RG LSGGQ+Q VA+ARA+L +P ILLLDE TSA+D SE +
Sbjct: 120 TDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPPILLLDEPTSAMDMNSEERL 179
Query: 1013 QEALDKLMEGRTTIMVAHRLSTIRNADKIAVLQQGKV 1049
+E L +L+ +T I++ HR S + D+I V+ G++
Sbjct: 180 KERLRQLLGDKTLIIITHRPSLLDLVDRIIVMDSGRI 216
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. Length = 220 |
| >gnl|CDD|130260 TIGR01192, chvA, glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Score = 245 bits (627), Expect = 3e-70
Identities = 186/588 (31%), Positives = 296/588 (50%), Gaps = 53/588 (9%)
Query: 504 LNAAEWPYAVLGSVGAILAGM---EAPLFALGITHILTAFYSPHDSQIKRVVDQVALIFV 560
LN + ++ LA + E LF I+ A S D V ++
Sbjct: 14 LNVHKNRVLLIVIANITLAAITIAEPILFG----RIIDAISSKSD------VLPTLALWA 63
Query: 561 GLAVVTIPVYLLQHYFYTLMGEHLTARVRLSM----FSAILSNEIGWFDLDENNTGLLIS 616
G V Y+L + L R ++ F I+S + W + L +
Sbjct: 64 GFGVFNTIAYVL----VAREADRLAHGRRATLLTEAFGRIISMPLSWHQQ-RGTSNALHT 118
Query: 617 TLAADATLVRSALADRLSIIVQNVALTVTAFVI---AFILSWRLAAV--VAASLPLLIGA 671
L A TL L + Q++A V F++ AF + WRL+ V V L +LI
Sbjct: 119 LLRATETL----FGLWLEFMRQHLATFVALFLLIPTAFAMDWRLSIVLMVLGILYILIAK 174
Query: 672 FVAEQLFLKGFGGDYNRAYSRATSVAREAIANIRTVAAYGIEKRISIQFASELSQPNKQA 731
V ++ K Y ++I+N+ V +Y RI + S L Q
Sbjct: 175 LVMQRT--KNGQAAVEHHYHNVFKHVSDSISNVSVVHSY---NRIEAE-TSALKQ-FTNN 227
Query: 732 LLRGHIS-----GFGYGVSQLLSLCSYALGLWYASVLIKQKGSNFGDIMK--SFMVLIIT 784
LL G++++ S S L +VL+ + + G+++ F L+I
Sbjct: 228 LLSAQYPVLDWWALASGLNRMASTISMMCILVIGTVLVIKGELSVGEVIAFIGFANLLIG 287
Query: 785 ALAVAETLALAPDIVKGSQALGPVFGILYRKTAIQPDDPA-SKEVTEIKGNIELRNVSFK 843
L + I + L F + + Q ++PA + E+ +KG +E R+++F+
Sbjct: 288 RLD--QMSGFITQIFEARAKLEDFFDL--EDSVFQREEPADAPELPNVKGAVEFRHITFE 343
Query: 844 YPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRT 903
+ +++ + AG+++A+VG +G+GK+T+I+L+ R YDP G +LIDG DI T
Sbjct: 344 FANSSQGV--FDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGIDINT 401
Query: 904 LNLRSLRRKIGLVQQEPALFSTTIYENIKYGNEDASEIELMKATKAANAHGFISRMPEGY 963
+ SLR+ I V Q+ LF+ +I ENI+ G E A++ E+ +A KAA AH FI + GY
Sbjct: 402 VTRESLRKSIATVFQDAGLFNRSIRENIRLGREGATDEEVYEAAKAAAAHDFILKRSNGY 461
Query: 964 QSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLMEGR 1023
+ VG+RG +LSGG++QR+AIARAILKN IL+LDEATSALD +E ++ A+D L + R
Sbjct: 462 DTLVGERGNRLSGGERQRLAIARAILKNAPILVLDEATSALDVETEARVKNAIDALRKNR 521
Query: 1024 TTIMVAHRLSTIRNADKIAVLQQGKVAEIGSHEQLLRKENGIYKQLIR 1071
TT ++AHRLST+RNAD + L QG++ E GS ++L++K +G + +L+R
Sbjct: 522 TTFIIAHRLSTVRNADLVLFLDQGRLIEKGSFQELIQK-DGRFYKLLR 568
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 585 |
| >gnl|CDD|234189 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Score = 245 bits (629), Expect = 2e-69
Identities = 139/452 (30%), Positives = 227/452 (50%), Gaps = 58/452 (12%)
Query: 643 TVTAFV----------IAFILSWRLAAVVAASLPLLIGAFVAEQLFLKGFGGDYNRAYSR 692
T+TA + + I+ L V ++PL++ + Q L + R ++
Sbjct: 263 TLTALIDLPFALLFLLVIAIIGGPLVWVPLVAIPLILLPGLLLQRPLSRLAEESMRESAQ 322
Query: 693 ATSVAREAIANIRTVAAYGIEKRI------SIQFASELSQPNKQALLRGHISGFGYGVSQ 746
+V E+++ + T+ A E R ++ + K L + F + Q
Sbjct: 323 RNAVLVESLSGLETIKALNAEGRFQRRWEQTVAALARSGL--KSRFLSNLATNFAQFIQQ 380
Query: 747 LLSLCSYALGLWYASVLIKQKGSNFGDIMKSFMVLI-ITALAVAETLALAPDIVKGSQAL 805
L+S+ +G++ S G++ + LI L+ ALAP L
Sbjct: 381 LVSVAIVVVGVYLISD---------GEL--TMGGLIACVMLS---GRALAP--------L 418
Query: 806 GPVFGILYR----KTAIQ------------PDDPASKEVTEIKGNIELRNVSFKYPVRPD 849
G + G+L R KTA+Q P+ ++G IE RNVSF YP +
Sbjct: 419 GQLAGLLTRYQQAKTALQSLDELMQLPVERPEGTRFLHRPRLQGEIEFRNVSFAYPGQET 478
Query: 850 ITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSL 909
+ +N++L + G +A++G+ GSGKST++ L++ Y P G+VL+DG DIR ++ L
Sbjct: 479 PAL-DNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQIDPADL 537
Query: 910 RRKIGLVQQEPALFSTTIYENIKYGNEDASEIELMKATKAANAHGFISRMPEGYQSHVGD 969
RR IG V Q+P LF T+ +NI G A + E+++A + A F+ R P+G +G+
Sbjct: 538 RRNIGYVPQDPRLFYGTLRDNIALGAPYADDEEILRAAELAGVTEFVRRHPDGLDMQIGE 597
Query: 970 RGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLMEGRTTIMVA 1029
RG LSGGQ+Q VA+ARA+L++P ILLLDE TSA+D SE ++ L + + G+T ++V
Sbjct: 598 RGRSLSGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWLAGKTLVLVT 657
Query: 1030 HRLSTIRNADKIAVLQQGKVAEIGSHEQLLRK 1061
HR S + D+I V+ G++ G +Q+L
Sbjct: 658 HRTSLLDLVDRIIVMDNGRIVADGPKDQVLEA 689
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]. Length = 694 |
| >gnl|CDD|163508 TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Score = 245 bits (627), Expect = 4e-69
Identities = 107/251 (42%), Positives = 152/251 (60%), Gaps = 4/251 (1%)
Query: 190 ERPGDDGITLPKLAGQIEFSEVCFAY-PSRPHMVFENLNFSVDAGKTFAFVGPSGSGKST 248
E P P+L+G +E + F Y P P ++ EN + ++ G+ A VG SGSGKST
Sbjct: 462 EAPAAGSEPSPRLSGYVELRNITFGYSPLEPPLI-ENFSLTLQPGQRVALVGGSGSGKST 520
Query: 249 IISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNILLGKEDA 308
I +V LY+P SG+IL DG + + + L + +V Q+ LF ++ +N+ L
Sbjct: 521 IAKLVAGLYQPWSGEILFDGIPREEIPREVLANSVAMVDQDIFLFEGTVRDNLTLWDPTI 580
Query: 309 SMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLD 368
++ A K A H + P GY ++ EGG LSGGQ+QR+ IARA++RNP IL+LD
Sbjct: 581 PDADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQRQRLEIARALVRNPSILILD 640
Query: 369 EATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRDVDTIMVLKNGQVVESGTHVDL 428
EATSALD E+E I+ L + T I+VAHRLST+RD D I+VL+ G+VV+ GTH +L
Sbjct: 641 EATSALDPETEKIIDDNLRR--RGCTCIIVAHRLSTIRDCDEIIVLERGKVVQRGTHEEL 698
Query: 429 ISKGGEYAALV 439
+ GG YA L+
Sbjct: 699 WAVGGAYARLI 709
|
This protein describes a multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHLM, Nitrile Hydratase Leader Microcin [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 710 |
| >gnl|CDD|227321 COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 240 bits (615), Expect = 9e-69
Identities = 114/276 (41%), Positives = 162/276 (58%), Gaps = 7/276 (2%)
Query: 169 AKGKAAAANIISIIKENSHSSERPGDDGITLPKLAGQIEFS--EVCFAYPSRPHMVFENL 226
A G+AAA + ++++ PG IE S + F YP +L
Sbjct: 285 AAGEAAADKLFTLLE---SPVATPGSGEKAEVANEPPIEISLENLSFRYPDGK-PALSDL 340
Query: 227 NFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGLV 286
N ++ AG+ A VG SG+GKST+++++ PT G+I ++G DL+ L + R+Q+ V
Sbjct: 341 NLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQISWV 400
Query: 287 SQEPALFATSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSG 346
SQ P LFA +I NILL + DAS + +I A A FV PDG T +GEGG LSG
Sbjct: 401 SQNPYLFAGTIRENILLARPDASDEEIIAALDQAGLLEFVPK-PDGLDTVIGEGGAGLSG 459
Query: 347 GQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVR 406
GQ QR+A+ARA+L +LLLDE T+ LDAE+E I+ +AL+++ +T +V+ HRL
Sbjct: 460 GQAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQALQELAKQKTVLVITHRLEDAA 519
Query: 407 DVDTIMVLKNGQVVESGTHVDLISKGGEYAALVNLQ 442
D D I+VL NG++VE GTH +L K G YA L+ Q
Sbjct: 520 DADRIVVLDNGRLVEQGTHEELSEKQGLYANLLKQQ 555
|
Length = 559 |
| >gnl|CDD|163508 TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Score = 242 bits (621), Expect = 3e-68
Identities = 141/462 (30%), Positives = 223/462 (48%), Gaps = 37/462 (8%)
Query: 629 LADRLSIIVQNVALTVTAFVIAFILSWRLAAVVAASLPLLIGAFVAEQLFLKGFGGDYNR 688
L+ +L+ + + V ++ + L + A + + A +
Sbjct: 267 LSGQLATTALDAVMLVFYALLMLLYDPVLTLIGIAFAAINVLALQLVSRRRVDANRRLQQ 326
Query: 689 AYSRATSVAREAIANIRTVAAYGIE----KRISIQFASELSQPNKQALLRGHISGFGYGV 744
+ T VA + +I T+ A G+E R + A L+ +Q L G ++ +
Sbjct: 327 DAGKLTGVAISGLQSIETLKASGLESDFFSRWAGYQAKLLNA--QQEL--GVLTQILGVL 382
Query: 745 SQLLSLCSYALGLWYASVLIKQKGSNFGD------IMKSF------MVLIITALAVAE-T 791
LL+ + AL L + + + G +M SF +V L E
Sbjct: 383 PTLLTSLNSALILVVGGLRVMEGQLTIGMLVAFQSLMSSFLEPVNNLVGFGGTLQELEGD 442
Query: 792 LALAPDIVKGSQALGPVFGILYRKTAIQPDDPASKEVTEIKGNIELRNVSFKYPV--RPD 849
L D++ + P+ + S+ + G +ELRN++F Y P
Sbjct: 443 LNRLDDVL--RNPVDPLLE------EEEAPAAGSEPSPRLSGYVELRNITFGYSPLEPPL 494
Query: 850 ITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSL 909
I EN +L + G+ +A+VG SGSGKST+ LV Y P SG +L DG + L
Sbjct: 495 I---ENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEILFDGIPREEIPREVL 551
Query: 910 RRKIGLVQQEPALFSTTIYENIKYGNEDASEIELMKATKAANAHGFISRMPEGYQSHVGD 969
+ +V Q+ LF T+ +N+ + + +L++A K A H I+ P GY + + +
Sbjct: 552 ANSVAMVDQDIFLFEGTVRDNLTLWDPTIPDADLVRACKDAAIHDVITSRPGGYDAELAE 611
Query: 970 RGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLMEGRTTIMVA 1029
G LSGGQ+QR+ IARA+++NPSIL+LDEATSALD +E +I + L + G T I+VA
Sbjct: 612 GGANLSGGQRQRLEIARALVRNPSILILDEATSALDPETEKIIDDNLRR--RGCTCIIVA 669
Query: 1030 HRLSTIRNADKIAVLQQGKVAEIGSHEQLLRKENGIYKQLIR 1071
HRLSTIR+ D+I VL++GKV + G+HE+L G Y +LIR
Sbjct: 670 HRLSTIRDCDEIIVLERGKVVQRGTHEELW-AVGGAYARLIR 710
|
This protein describes a multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHLM, Nitrile Hydratase Leader Microcin [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 710 |
| >gnl|CDD|213212 cd03245, ABCC_bacteriocin_exporters, ATP-binding cassette domain of bacteriocin exporters, subfamily C | Back alignment and domain information |
|---|
Score = 225 bits (576), Expect = 1e-67
Identities = 92/220 (41%), Positives = 143/220 (65%)
Query: 204 GQIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGK 263
G+IEF V F+YP++ +N++ ++ AG+ A +G GSGKST++ ++ LY+PTSG
Sbjct: 1 GRIEFRNVSFSYPNQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGS 60
Query: 264 ILLDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNILLGKEDASMDRVIEAAKAANAH 323
+LLDG D++ L LR +G V Q+ LF ++ +NI LG A +R++ AA+ A
Sbjct: 61 VLLDGTDIRQLDPADLRRNIGYVPQDVTLFYGTLRDNITLGAPLADDERILRAAELAGVT 120
Query: 324 SFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQ 383
FV P+G Q+GE G LSGGQ+Q +A+ARA+L +P ILLLDE TSA+D SE ++
Sbjct: 121 DFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPPILLLDEPTSAMDMNSEERLK 180
Query: 384 RALEKIMSNRTTIVVAHRLSTVRDVDTIMVLKNGQVVESG 423
L +++ ++T I++ HR S + VD I+V+ +G++V G
Sbjct: 181 ERLRQLLGDKTLIIITHRPSLLDLVDRIIVMDSGRIVADG 220
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. Length = 220 |
| >gnl|CDD|234189 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Score = 240 bits (615), Expect = 1e-67
Identities = 140/424 (33%), Positives = 217/424 (51%), Gaps = 31/424 (7%)
Query: 17 FAVGFTSV-----WQLTLLTLAVVPLIAVAGGAYTITMSTLSEKGEAAYGEAGKVAEEII 71
FA+ F V L + L +PLI + G +S L+E+ + V E +
Sbjct: 272 FALLFLLVIAIIGGPLVWVPLVAIPLILLPGLLLQRPLSRLAEESMRESAQRNAVLVESL 331
Query: 72 SQVRAVYAFVGEAKAIESYSHSLKEALKQGKKSGVAKGIGVGLTYGLLFCAWALLLWYAG 131
S + + A E + + ++ + G KS + + T F + L
Sbjct: 332 SGLETIKALNAEGRFQRRWEQTVAALARSGLKS---RFLSNLATN---FAQFIQQLVSVA 385
Query: 132 I------LVRHGD-TNGGKAFTTIINVIFSGFALGQAAPNLAAIA----KGKAAAANIIS 180
I L+ G+ T GG I V+ SG AL AP L +A + + A + S
Sbjct: 386 IVVVGVYLISDGELTMGG----LIACVMLSGRAL---AP-LGQLAGLLTRYQQAKTALQS 437
Query: 181 IIKENSHSSERPGDDG-ITLPKLAGQIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFV 239
+ + ERP + P+L G+IEF V FAYP + +N++ ++ G+ A +
Sbjct: 438 LDELMQLPVERPEGTRFLHRPRLQGEIEFRNVSFAYPGQETPALDNVSLTIRPGEKVAII 497
Query: 240 GPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGLVSQEPALFATSIAN 299
G GSGKST++ ++ LY+PT G +LLDG D++ + LR +G V Q+P LF ++ +
Sbjct: 498 GRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQIDPADLRRNIGYVPQDPRLFYGTLRD 557
Query: 300 NILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVL 359
NI LG A + ++ AA+ A FV PDG Q+GE G LSGGQ+Q +A+ARA+L
Sbjct: 558 NIALGAPYADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQAVALARALL 617
Query: 360 RNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRDVDTIMVLKNGQV 419
R+P ILLLDE TSA+D SE + L++ ++ +T ++V HR S + VD I+V+ NG++
Sbjct: 618 RDPPILLLDEPTSAMDNRSEERFKDRLKRWLAGKTLVLVTHRTSLLDLVDRIIVMDNGRI 677
Query: 420 VESG 423
V G
Sbjct: 678 VADG 681
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]. Length = 694 |
| >gnl|CDD|234033 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Score = 231 bits (592), Expect = 6e-66
Identities = 101/250 (40%), Positives = 139/250 (55%), Gaps = 8/250 (3%)
Query: 167 AIAKGKAAAANIISIIKENS--HSSERPGDDGITLPKLAGQIEFSEVCFAYPSRPHMVFE 224
A A G AAA + +++ + + P A +EFS V AYP R
Sbjct: 286 ARADGVAAAEALFAVLDAAPRPLAGKAP-----VTAAPAPSLEFSGVSVAYPGRRP-ALR 339
Query: 225 NLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMG 284
++F+V G+ A VGPSG+GKST+++++ +PT G I ++G L R+Q+
Sbjct: 340 PVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSWRDQIA 399
Query: 285 LVSQEPALFATSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQL 344
V Q P LFA +IA NI L + DAS + EA + A FV LP G T +GEGG L
Sbjct: 400 WVPQHPFLFAGTIAENIRLARPDASDAEIREALERAGLDEFVAALPQGLDTPIGEGGAGL 459
Query: 345 SGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLST 404
SGGQ QR+A+ARA LR+ +LLLDE T+ LDAE+E V AL + RT ++V HRL+
Sbjct: 460 SGGQAQRLALARAFLRDAPLLLLDEPTAHLDAETEAEVLEALRALAQGRTVLLVTHRLAL 519
Query: 405 VRDVDTIMVL 414
D I+VL
Sbjct: 520 AALADRIVVL 529
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD. Length = 529 |
| >gnl|CDD|213211 cd03244, ABCC_MRP_domain2, ATP-binding cassette domain 2 of multidrug resistance-associated protein | Back alignment and domain information |
|---|
Score = 219 bits (561), Expect = 2e-65
Identities = 84/223 (37%), Positives = 140/223 (62%), Gaps = 4/223 (1%)
Query: 833 GNIELRNVSFKYPVRPDI-TIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPIS 891
G+IE +NVS +Y RP++ + +N++ + G + +VG++GSGKS+++ + R + S
Sbjct: 1 GDIEFKNVSLRY--RPNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSS 58
Query: 892 GTVLIDGYDIRTLNLRSLRRKIGLVQQEPALFSTTIYENIKYGNEDASEIELMKATKAAN 951
G++LIDG DI + L LR +I ++ Q+P LFS TI N+ E S+ EL +A +
Sbjct: 59 GSILIDGVDISKIGLHDLRSRISIIPQDPVLFSGTIRSNLDPFGE-YSDEELWQALERVG 117
Query: 952 AHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENL 1011
F+ +P G + V + G LS GQ+Q + +ARA+L+ IL+LDEAT+++D ++ L
Sbjct: 118 LKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSKILVLDEATASVDPETDAL 177
Query: 1012 IQEALDKLMEGRTTIMVAHRLSTIRNADKIAVLQQGKVAEIGS 1054
IQ+ + + + T + +AHRL TI ++D+I VL +G+V E S
Sbjct: 178 IQKTIREAFKDCTVLTIAHRLDTIIDSDRILVLDKGRVVEFDS 220
|
The ABC subfamily C is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 221 |
| >gnl|CDD|213211 cd03244, ABCC_MRP_domain2, ATP-binding cassette domain 2 of multidrug resistance-associated protein | Back alignment and domain information |
|---|
Score = 218 bits (558), Expect = 5e-65
Identities = 89/224 (39%), Positives = 141/224 (62%), Gaps = 7/224 (3%)
Query: 204 GQIEFSEVCFAYPSRPHM--VFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTS 261
G IEF V Y RP++ V +N++FS+ G+ VG +GSGKS+++ + RL E +S
Sbjct: 1 GDIEFKNVSLRY--RPNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSS 58
Query: 262 GKILLDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNI-LLGKEDASMDRVIEAAKAA 320
G IL+DG D+ + L LR ++ ++ Q+P LF+ +I +N+ G+ S + + +A +
Sbjct: 59 GSILIDGVDISKIGLHDLRSRISIIPQDPVLFSGTIRSNLDPFGE--YSDEELWQALERV 116
Query: 321 NAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESEL 380
FVE LP G T V EGG LS GQ+Q + +ARA+LR KIL+LDEAT+++D E++
Sbjct: 117 GLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSKILVLDEATASVDPETDA 176
Query: 381 IVQRALEKIMSNRTTIVVAHRLSTVRDVDTIMVLKNGQVVESGT 424
++Q+ + + + T + +AHRL T+ D D I+VL G+VVE +
Sbjct: 177 LIQKTIREAFKDCTVLTIAHRLDTIIDSDRILVLDKGRVVEFDS 220
|
The ABC subfamily C is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 221 |
| >gnl|CDD|227320 COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 229 bits (587), Expect = 8e-65
Identities = 117/445 (26%), Positives = 200/445 (44%), Gaps = 27/445 (6%)
Query: 7 LRYLSQFFVGFAVGFTSVWQLTLLTLAVVPLIAVAGGAYTITMSTLSEKGEAAYGEAGKV 66
LR ++ V + L+ ++ + L+ + + + TL + +G
Sbjct: 133 LRVIAPAVVALVLIAVVTIGLSFFSIPLALLLGLILLLLLLIIPTLFYRAGRKFGAHLAQ 192
Query: 67 AEEIISQ--VRAVYA------FVGEAKAIESYSHSLKEALKQGKKSGVAKGI---GVGLT 115
+ V F E + + LK +K G+ + L
Sbjct: 193 GRAALRSQFTDWVQGQAELLIFGAEDAYRTALEATEASWLKAQRKQARFTGLSDAILLLI 252
Query: 116 YGLLFCAWALLLWYAGILVRHGDTNGGKAFTTIINVIFSGFALGQAAPNLAAIAKGK--- 172
GLL LL + V G + FA +A LA A
Sbjct: 253 AGLLV---IGLLLWMAAQVGAGALAQ----PGAALALLVIFAALEAFEPLAPGAFQHLGQ 305
Query: 173 --AAAANIISIIKENSHSSERPGDDGITLPKLAGQIEFSEVCFAYPSRPHMVFENLNFSV 230
A+A + I+ + + P + T + +E V F YP + +N N ++
Sbjct: 306 VIASARRLNDILDQKPEVTF-PDEQTATTGQA---LELRNVSFTYPGQQTKALKNFNLTL 361
Query: 231 DAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGLVSQEP 290
G+ A +G SGSGKST++ ++ ++P G I L+G ++ SL + LRE + +++Q
Sbjct: 362 AQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSITLNGVEIASLDEQALRETISVLTQRV 421
Query: 291 ALFATSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQ 350
LF+ ++ +N+ L DAS + + A + +E PDG T +GEGG +LSGG+++
Sbjct: 422 HLFSGTLRDNLRLANPDASDEELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERR 481
Query: 351 RIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRDVDT 410
R+A+ARA+L + + LLDE T LD +E V L + +T ++V HRL + +D
Sbjct: 482 RLALARALLHDAPLWLLDEPTEGLDPITERQVLALLFEHAEGKTLLMVTHRLRGLERMDR 541
Query: 411 IMVLKNGQVVESGTHVDLISKGGEY 435
I+VL NG+++E GTH +L++ G Y
Sbjct: 542 IIVLDNGKIIEEGTHAELLANNGRY 566
|
Length = 573 |
| >gnl|CDD|227321 COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 228 bits (584), Expect = 1e-64
Identities = 101/262 (38%), Positives = 158/262 (60%), Gaps = 8/262 (3%)
Query: 820 PDDPASKEVTEIKGN----IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSG 875
P S E E+ I L N+SF+YP +LNL + AG+ A+VG SG+G
Sbjct: 302 VATPGSGEKAEVANEPPIEISLENLSFRYPDGK--PALSDLNLTIKAGQLTALVGASGAG 359
Query: 876 KSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRKIGLVQQEPALFSTTIYENIKYGN 935
KST+++L++ F P G + ++G D+R L+ + R++I V Q P LF+ TI ENI
Sbjct: 360 KSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQISWVSQNPYLFAGTIRENILLAR 419
Query: 936 EDASEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSIL 995
DAS+ E++ A A F+ + P+G + +G+ G LSGGQ QR+A+ARA+L S+L
Sbjct: 420 PDASDEEIIAALDQAGLLEFVPK-PDGLDTVIGEGGAGLSGGQAQRLALARALLSPASLL 478
Query: 996 LLDEATSALDTASENLIQEALDKLMEGRTTIMVAHRLSTIRNADKIAVLQQGKVAEIGSH 1055
LLDE T+ LD +E +I +AL +L + +T +++ HRL +AD+I VL G++ E G+H
Sbjct: 479 LLDEPTAHLDAETEQIILQALQELAKQKTVLVITHRLEDAADADRIVVLDNGRLVEQGTH 538
Query: 1056 EQLLRKENGIYKQLIRLQQDKN 1077
E+L + G+Y L++ Q+ +
Sbjct: 539 EELSE-KQGLYANLLKQQEGRR 559
|
Length = 559 |
| >gnl|CDD|182732 PRK10789, PRK10789, putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Score = 227 bits (581), Expect = 4e-64
Identities = 145/443 (32%), Positives = 229/443 (51%), Gaps = 48/443 (10%)
Query: 25 WQLTLLTLAVVPLIAVAGGAYTITMSTLSEKGEAAYGEAGKVAEEIISQVRAVYAFVGEA 84
WQLTLL L +P++A+ Y + + +AA+ +E ++ +R + AF
Sbjct: 137 WQLTLLALLPMPVMAIMIKRYGDQLHERFKLAQAAFSSLNDRTQESLTSIRMIKAF---- 192
Query: 85 KAIESYSHSLKE--ALKQGKKS-GVAK---------GIGVGLTYGLLFCAWALLLWYAG- 131
+E +L A GKK+ VA+ I +G+ A LL G
Sbjct: 193 -GLEDRQSALFAADAEDTGKKNMRVARIDARFDPTIYIAIGM---------ANLLAIGGG 242
Query: 132 -ILVRHGDTNGGKAFTTIINVIFSGFALGQAAPNLA------AIAKGKAAAANIISIIKE 184
+V +G G+ T+ V++ G + P LA + +G AA + I +++
Sbjct: 243 SWMVVNGSLTLGQ-LTSF--VMYLGLMIW---PMLALAWMFNIVERGSAAYSRIRAML-- 294
Query: 185 NSHSSERPG-DDG-ITLPKLAGQIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPS 242
+E P DG +P+ G+++ + F YP H EN+NF++ G+ GP+
Sbjct: 295 ----AEAPVVKDGSEPVPEGRGELDVNIRQFTYPQTDHPALENVNFTLKPGQMLGICGPT 350
Query: 243 GSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNIL 302
GSGKST++S++QR ++ + G I L LQL R ++ +VSQ P LF+ ++ANNI
Sbjct: 351 GSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSRLAVVSQTPFLFSDTVANNIA 410
Query: 303 LGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNP 362
LG+ DA+ + A+ A+ H + LP GY T+VGE G LSGGQKQRI+IARA+L N
Sbjct: 411 LGRPDATQQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARALLLNA 470
Query: 363 KILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRDVDTIMVLKNGQVVES 422
+IL+LD+A SA+D +E + L + RT I+ AHRLS + + I+V+++G + +
Sbjct: 471 EILILDDALSAVDGRTEHQILHNLRQWGEGRTVIISAHRLSALTEASEILVMQHGHIAQR 530
Query: 423 GTHVDLISKGGEYAALVNLQSSE 445
G H L + G Y + Q E
Sbjct: 531 GNHDQLAQQSGWYRDMYRYQQLE 553
|
Length = 569 |
| >gnl|CDD|182732 PRK10789, PRK10789, putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Score = 224 bits (574), Expect = 4e-63
Identities = 150/452 (33%), Positives = 241/452 (53%), Gaps = 44/452 (9%)
Query: 653 LSWRLAAVVAASLPLLIGAFVAEQLFLKGFGGD-YNR------AYSRATSVAREAIANIR 705
+SW+L + A LP+ + A + +K +G + R A+S +E++ +IR
Sbjct: 135 ISWQLT--LLALLPMPVMA-----IMIKRYGDQLHERFKLAQAAFSSLNDRTQESLTSIR 187
Query: 706 TVAAYGIEKRISIQFASELSQPNKQALLRGHISG-------FGYGVSQLLSLCSYALGLW 758
+ A+G+E R S FA++ K+ + I G++ LL++ + +
Sbjct: 188 MIKAFGLEDRQSALFAADAEDTGKKNMRVARIDARFDPTIYIAIGMANLLAIGGGSWMVV 247
Query: 759 YASVLIKQKGSNFGDIMKSFMVLIITALAVAETLALA--PDIV-KGSQALGPVFGILYRK 815
S+ + Q + SF++ + L + LALA +IV +GS A + +L
Sbjct: 248 NGSLTLGQ--------LTSFVMYL--GLMIWPMLALAWMFNIVERGSAAYSRIRAMLAEA 297
Query: 816 TAIQPDDPASKEVTEIKGNIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSG 875
+ S+ V E +G +++ F YP + D EN+N + G+ L + G +GSG
Sbjct: 298 PVV---KDGSEPVPEGRGELDVNIRQFTYP-QTDHPALENVNFTLKPGQMLGICGPTGSG 353
Query: 876 KSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRKIGLVQQEPALFSTTIYENIKYGN 935
KST++SL+ R +D G + + L L S R ++ +V Q P LFS T+ NI G
Sbjct: 354 KSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSRLAVVSQTPFLFSDTVANNIALGR 413
Query: 936 EDASEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSIL 995
DA++ E+ + A+ H I R+P+GY + VG+RGV LSGGQKQR++IARA+L N IL
Sbjct: 414 PDATQQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARALLLNAEIL 473
Query: 996 LLDEATSALDTASENLIQEALDKLMEGRTTIMVAHRLSTIRNADKIAVLQQGKVAEIGSH 1055
+LD+A SA+D +E+ I L + EGRT I+ AHRLS + A +I V+Q G +A+ G+H
Sbjct: 474 ILDDALSAVDGRTEHQILHNLRQWGEGRTVIISAHRLSALTEASEILVMQHGHIAQRGNH 533
Query: 1056 EQLLRKENGIYKQLIRLQQ-----DKNPEAME 1082
+QL +++G Y+ + R QQ D PE E
Sbjct: 534 DQLA-QQSGWYRDMYRYQQLEAALDDAPEIRE 564
|
Length = 569 |
| >gnl|CDD|234357 TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 226 bits (579), Expect = 7e-63
Identities = 119/323 (36%), Positives = 175/323 (54%), Gaps = 15/323 (4%)
Query: 124 ALLLWYAGILVRHGDTNGGK--AFTTIINVIFSGFALG--QAAPNLAAIAKGKAAAANII 179
A L A L+ + G AF T FSG ++ A+ A I+
Sbjct: 374 AALFAAAISLLGGAGLSLGSFLAFNTAF-GSFSGAVTQLSNTLISILAVIPLWERAKPIL 432
Query: 180 SIIKENSHSSERPGDDGITLPKLAGQIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFV 239
+ E + PG KL+G IE V F Y ++ ++++ ++ G+ A V
Sbjct: 433 EALPEVDEAKTDPG-------KLSGAIEVDRVTFRYRPDGPLILDDVSLQIEPGEFVAIV 485
Query: 240 GPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGLVSQEPALFATSIAN 299
GPSGSGKST++ ++ P SG + DG DL L ++ +R Q+G+V Q L + SI
Sbjct: 486 GPSGSGKSTLLRLLLGFETPESGSVFYDGQDLAGLDVQAVRRQLGVVLQNGRLMSGSIFE 545
Query: 300 NILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVL 359
NI G ++D EAA+ A + +P G T + EGG LSGGQ+QR+ IARA++
Sbjct: 546 NIA-GGAPLTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIARALV 604
Query: 360 RNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRDVDTIMVLKNGQV 419
R P+ILL DEATSALD ++ IV +LE++ T IV+AHRLST+R+ D I VL G+V
Sbjct: 605 RKPRILLFDEATSALDNRTQAIVSESLERL--KVTRIVIAHRLSTIRNADRIYVLDAGRV 662
Query: 420 VESGTHVDLISKGGEYAALVNLQ 442
V+ GT+ +L+++ G +A L Q
Sbjct: 663 VQQGTYDELMAREGLFAQLARRQ 685
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal leader sequence cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, members of protein families related to nitrile hydratase alpha subunit or to nif11 have undergone paralogous family expansions, with members possessing a putative bacteriocin cleavage region ending with a classic Gly-Gly motif. Those sets of putative bacteriocins, members of this protein family and its partners TIGR03794 and TIGR03796, and cyclodehydratase/docking scaffold fusion proteins of thiazole/oxazole biosynthesis frequently show correlated species distribution and co-clustering within many of those genomes [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 686 |
| >gnl|CDD|234357 TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 226 bits (578), Expect = 1e-62
Identities = 171/603 (28%), Positives = 284/603 (47%), Gaps = 63/603 (10%)
Query: 496 PSIWELLK--LNAAEWPYAVLGSVGAI--LAGMEAPLFALGITHILTAFYSPHDSQIKRV 551
+ +LL+ L A + ++G + L GM P+ T IL P D+ +
Sbjct: 121 LGLRDLLRFALRGARRDLLAILAMGLLGTLLGMLVPI----ATGILIGTAIP-DADRSLL 175
Query: 552 VDQVALIFVGLAVVTIPVYLLQHYFYTLMGEHLT-ARVRLSMFSAILSNEIGWFDLDENN 610
V Q+AL + AV L Q L E A ++ +++ +L + +F + +
Sbjct: 176 V-QIALALLAAAVGAAAFQLAQS-LAVLRLETRMDASLQAAVWDRLLRLPVSFFR--QYS 231
Query: 611 TGLLISTLAADA-TLVRSALADRLSIIVQNVALTVTAFVIAFILSWRLAAVVAASLPLLI 669
TG L S A + +R L+ + + + + F SW+LA V A + I
Sbjct: 232 TGDLAS--RAMGISQIRRILSGSTLTTLLSGIFALLNLGLMFYYSWKLALVAVALALVAI 289
Query: 670 GAFVAEQLFLKGFGGDYNRAYSRATSVAREA-----------IANIRTVAAYGIEKRISI 718
G R I+ +R A E R
Sbjct: 290 AVT--------LVLGLLQVRKERRLLELSGKISGLTVQLINGISKLRVAGA---ENRAFA 338
Query: 719 QFASELSQPNKQALLRGHISGFGYGVSQLLSLCSYALGLWYASVLIKQKGSNFGDIMK-- 776
++A S+ K L I + +L + + A A L+ G + G +
Sbjct: 339 RWAKLFSRQRKLELSAQRIENLLTVFNAVLPVLTSAALFAAAISLLGGAGLSLGSFLAFN 398
Query: 777 -SFMVLIITALAVAETLALAPDIVKGSQALGPVFGILYRKTAIQPDDPASKEVTEIKGNI 835
+F ++ TL ++ + P+ A+ D A + ++ G I
Sbjct: 399 TAFGSFSGAVTQLSNTLISILAVIPLWERAKPIL------EALPEVDEAKTDPGKLSGAI 452
Query: 836 ELRNVSFKYPVRPD-ITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTV 894
E+ V+F+Y RPD I ++++L++ G +A+VG SGSGKST++ L++ F P SG+V
Sbjct: 453 EVDRVTFRY--RPDGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSV 510
Query: 895 LIDGYDIRTLNLRSLRRKIGLVQQEPALFSTTIYENIKYGN----EDASEIELMKATKAA 950
DG D+ L+++++RR++G+V Q L S +I+ENI G ++A +A + A
Sbjct: 511 FYDGQDLAGLDVQAVRRQLGVVLQNGRLMSGSIFENIAGGAPLTLDEA-----WEAARMA 565
Query: 951 NAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASEN 1010
I MP G + + + G LSGGQ+QR+ IARA+++ P ILL DEATSALD ++
Sbjct: 566 GLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIARALVRKPRILLFDEATSALDNRTQA 625
Query: 1011 LIQEALDKLMEGRTTIMVAHRLSTIRNADKIAVLQQGKVAEIGSHEQLLRKENGIYKQLI 1070
++ E+L++L T I++AHRLSTIRNAD+I VL G+V + G++++L+ +E G++ QL
Sbjct: 626 IVSESLERL--KVTRIVIAHRLSTIRNADRIYVLDAGRVVQQGTYDELMARE-GLFAQLA 682
Query: 1071 RLQ 1073
R Q
Sbjct: 683 RRQ 685
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal leader sequence cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, members of protein families related to nitrile hydratase alpha subunit or to nif11 have undergone paralogous family expansions, with members possessing a putative bacteriocin cleavage region ending with a classic Gly-Gly motif. Those sets of putative bacteriocins, members of this protein family and its partners TIGR03794 and TIGR03796, and cyclodehydratase/docking scaffold fusion proteins of thiazole/oxazole biosynthesis frequently show correlated species distribution and co-clustering within many of those genomes [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 686 |
| >gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Score = 229 bits (584), Expect = 2e-61
Identities = 151/495 (30%), Positives = 239/495 (48%), Gaps = 117/495 (23%)
Query: 695 SVAREAIANIRTVAAYGIEKRISIQFASELSQPNKQALLRGHISGFGYGVSQLLSLCSYA 754
S+ EA+ IRTV +Y EK I +F +K L + G+ L SYA
Sbjct: 237 SIIEEALVGIRTVVSYCGEKTILKKFNLSEKLYSKYILKANFMESLHIGMINGFILASYA 296
Query: 755 LGLWYASVLI------KQKGSNF--GDIMKSFMVLIITALAVAETLALAPDIVKGSQALG 806
G WY + +I +Q ++F G ++ + ++I+ + L + +K +A
Sbjct: 297 FGFWYGTRIIISDLSNQQPNNDFHGGSVISILLGVLISMFMLTIILPNITEYMKSLEATN 356
Query: 807 PVFGILYRKTAIQPDDPASKEVTEIKGNIELRNVSFKYPVRPDITIFENLNLKVSAGRSL 866
++ I+ RK ++ +D K++ +IK I+ +NV F Y R D+ I+++LN ++ G++
Sbjct: 357 SLYEIINRKPLVENNDDG-KKLKDIK-KIQFKNVRFHYDTRKDVEIYKDLNFTLTEGKTY 414
Query: 867 AVVGQSGSGKSTVISLVMRFYDPISGTVLI-DGYDIRTLNLRSLRRKIGLVQQEPALFST 925
A VG+SG GKST++ L+ R YDP G ++I D ++++ +NL+ R KIG+V Q+P LFS
Sbjct: 415 AFVGESGCGKSTILKLIERLYDPTEGDIIINDSHNLKDINLKWWRSKIGVVSQDPLLFSN 474
Query: 926 TIYENIKYG--------------NEDASEI----------------------------EL 943
+I NIKY NED ++ EL
Sbjct: 475 SIKNNIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSNTTDSNEL 534
Query: 944 MKATKAANA---------------HGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAI 988
++ K H F+S +P+ Y++ VG +LSGGQKQR++IARAI
Sbjct: 535 IEMRKNYQTIKDSEVVDVSKKVLIHDFVSALPDKYETLVGSNASKLSGGQKQRISIARAI 594
Query: 989 LKNPSILLLDEATSALDTASENLIQEALDKLM--EGRTTIMVAHRLSTIRNADKIAVL-- 1044
++NP IL+LDEATS+LD SE L+Q+ ++ L E R TI++AHRLSTIR A+ I VL
Sbjct: 595 IRNPKILILDEATSSLDNKSEYLVQKTINNLKGNENRITIIIAHRLSTIRYANTIFVLSN 654
Query: 1045 ----------------------------QQGK-----------------VAEIGSHEQLL 1059
+ + E G+H+ L+
Sbjct: 655 RERGSTVDVDIIGEDPTKDNKENNNKNNKDDNNNNNNNNNNKINNAGSYIIEQGTHDALM 714
Query: 1060 RKENGIYKQLIRLQQ 1074
+ +NGIY +I Q+
Sbjct: 715 KNKNGIYYTMINNQK 729
|
Length = 1466 |
| >gnl|CDD|227320 COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 218 bits (558), Expect = 6e-61
Identities = 136/450 (30%), Positives = 218/450 (48%), Gaps = 28/450 (6%)
Query: 635 IIVQNVALTVTAFVIAFILSWRLAAVVAASLPLLIGAFVAEQLFLK-GFGGDYNRAYSRA 693
+V V + V ++F S LA ++ L LL+ + LF + G + A RA
Sbjct: 139 AVVALVLIAVVTIGLSFF-SIPLALLLGLILLLLL--LIIPTLFYRAGRKFGAHLAQGRA 195
Query: 694 TSVAR--EAIANIRTVAAYGIEKRISIQF-ASELS-QPNKQALLRGHISGFGYGVSQLLS 749
++ + + + +G E A+E S ++ R G+S +
Sbjct: 196 ALRSQFTDWVQGQAELLIFGAEDAYRTALEATEASWLKAQRKQARFT------GLSDAIL 249
Query: 750 LCSYAL---GLWYASVLIKQKGSNFGDIMKSFMVLIITALAVAETLALAPDIVKGSQALG 806
L L GL G+ +++I AL E LAP Q LG
Sbjct: 250 LLIAGLLVIGLLLWMAAQVGAGALAQPGAALALLVIFAALEAFE--PLAPGAF---QHLG 304
Query: 807 PVFGILYRKTAIQPDDPAS----KEVTEIKGNIELRNVSFKYPVRPDITIFENLNLKVSA 862
V R I P ++ +ELRNVSF YP +N NL ++
Sbjct: 305 QVIASARRLNDILDQKPEVTFPDEQTATTGQALELRNVSFTYP-GQQTKALKNFNLTLAQ 363
Query: 863 GRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRKIGLVQQEPAL 922
G +A++G+SGSGKST++ L+ +DP G++ ++G +I +L+ ++LR I ++ Q L
Sbjct: 364 GEKVAILGRSGSGKSTLLQLLAGAWDPQQGSITLNGVEIASLDEQALRETISVLTQRVHL 423
Query: 923 FSTTIYENIKYGNEDASEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRV 982
FS T+ +N++ N DAS+ EL A + + P+G + +G+ G +LSGG+++R+
Sbjct: 424 FSGTLRDNLRLANPDASDEELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRRL 483
Query: 983 AIARAILKNPSILLLDEATSALDTASENLIQEALDKLMEGRTTIMVAHRLSTIRNADKIA 1042
A+ARA+L + + LLDE T LD +E + L + EG+T +MV HRL + D+I
Sbjct: 484 ALARALLHDAPLWLLDEPTEGLDPITERQVLALLFEHAEGKTLLMVTHRLRGLERMDRII 543
Query: 1043 VLQQGKVAEIGSHEQLLRKENGIYKQLIRL 1072
VL GK+ E G+H +LL NG YK+L +L
Sbjct: 544 VLDNGKIIEEGTHAELL-ANNGRYKRLYQL 572
|
Length = 573 |
| >gnl|CDD|236865 PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 215 bits (551), Expect = 6e-60
Identities = 86/247 (34%), Positives = 144/247 (58%), Gaps = 3/247 (1%)
Query: 192 PGDDGITLPKLAGQIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIIS 251
P +++ + + V F YP +P V + L+ + AG+ A +G +G GKST++
Sbjct: 327 PTTSTAAADQVS--LTLNNVSFTYPDQPQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQ 384
Query: 252 MVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNILLGKEDASMD 311
++ R ++P G+ILL+G + LR+ + +VSQ LF+ ++ +N+LL +AS +
Sbjct: 385 LLTRAWDPQQGEILLNGQPIADYSEAALRQAISVVSQRVHLFSATLRDNLLLAAPNASDE 444
Query: 312 RVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEAT 371
+IE + +E G +GEGG QLSGG+++R+ IARA+L + +LLLDE T
Sbjct: 445 ALIEVLQQVGLEKLLED-DKGLNAWLGEGGRQLSGGEQRRLGIARALLHDAPLLLLDEPT 503
Query: 372 SALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRDVDTIMVLKNGQVVESGTHVDLISK 431
LDAE+E + L + N+T +++ HRL+ + D I V+ NGQ++E GTH +L+++
Sbjct: 504 EGLDAETERQILELLAEHAQNKTVLMITHRLTGLEQFDRICVMDNGQIIEQGTHQELLAQ 563
Query: 432 GGEYAAL 438
G Y L
Sbjct: 564 QGRYYQL 570
|
Length = 574 |
| >gnl|CDD|236870 PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 211 bits (539), Expect = 3e-58
Identities = 82/222 (36%), Positives = 138/222 (62%), Gaps = 3/222 (1%)
Query: 225 NLNFSVDAGKTFAFVGPSGSGKSTIISMVQRL-YEPTSGKILLDGHDLKSLQLKWLREQM 283
LNF++ AG+ A VGPSG+GK+++++ + L + P G + ++G +L+ L + R+ +
Sbjct: 368 PLNFTLPAGQRIALVGPSGAGKTSLLNAL--LGFLPYQGSLKINGIELRELDPESWRKHL 425
Query: 284 GLVSQEPALFATSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQ 343
V Q P L ++ +N+LLG DAS +++ +A + A F+ LP G T +G+
Sbjct: 426 SWVGQNPQLPHGTLRDNVLLGNPDASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAG 485
Query: 344 LSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLS 403
LS GQ QR+A+ARA+L+ ++LLLDE T++LDA SE +V +AL +TT++V H+L
Sbjct: 486 LSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAASRRQTTLMVTHQLE 545
Query: 404 TVRDVDTIMVLKNGQVVESGTHVDLISKGGEYAALVNLQSSE 445
+ D I V+++GQ+V+ G + +L GG +A L+ + E
Sbjct: 546 DLAQWDQIWVMQDGQIVQQGDYAELSQAGGLFATLLAHRQEE 587
|
Length = 588 |
| >gnl|CDD|236870 PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 210 bits (538), Expect = 4e-58
Identities = 79/221 (35%), Positives = 139/221 (62%), Gaps = 2/221 (0%)
Query: 855 NLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRKIG 914
LN + AG+ +A+VG SG+GK+++++ ++ F P G++ I+G ++R L+ S R+ +
Sbjct: 368 PLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-PYQGSLKINGIELRELDPESWRKHLS 426
Query: 915 LVQQEPALFSTTIYENIKYGNEDASEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQL 974
V Q P L T+ +N+ GN DAS+ +L +A + A F+ +P+G + +GD+ L
Sbjct: 427 WVGQNPQLPHGTLRDNVLLGNPDASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGL 486
Query: 975 SGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLMEGRTTIMVAHRLST 1034
S GQ QR+A+ARA+L+ +LLLDE T++LD SE L+ +AL+ +TT+MV H+L
Sbjct: 487 SVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAASRRQTTLMVTHQLED 546
Query: 1035 IRNADKIAVLQQGKVAEIGSHEQLLRKENGIYKQLIRLQQD 1075
+ D+I V+Q G++ + G + + L + G++ L+ +Q+
Sbjct: 547 LAQWDQIWVMQDGQIVQQGDYAE-LSQAGGLFATLLAHRQE 586
|
Length = 588 |
| >gnl|CDD|234033 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Score = 205 bits (524), Expect = 8e-57
Identities = 84/210 (40%), Positives = 128/210 (60%), Gaps = 2/210 (0%)
Query: 835 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTV 894
+E VS YP R ++ V G +A+VG SG+GKST+++L++ F DP G++
Sbjct: 322 LEFSGVSVAYPGRR--PALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSI 379
Query: 895 LIDGYDIRTLNLRSLRRKIGLVQQEPALFSTTIYENIKYGNEDASEIELMKATKAANAHG 954
++G + + S R +I V Q P LF+ TI ENI+ DAS+ E+ +A + A
Sbjct: 380 AVNGVPLADADADSWRDQIAWVPQHPFLFAGTIAENIRLARPDASDAEIREALERAGLDE 439
Query: 955 FISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQE 1014
F++ +P+G + +G+ G LSGGQ QR+A+ARA L++ +LLLDE T+ LD +E + E
Sbjct: 440 FVAALPQGLDTPIGEGGAGLSGGQAQRLALARAFLRDAPLLLLDEPTAHLDAETEAEVLE 499
Query: 1015 ALDKLMEGRTTIMVAHRLSTIRNADKIAVL 1044
AL L +GRT ++V HRL+ AD+I VL
Sbjct: 500 ALRALAQGRTVLLVTHRLALAALADRIVVL 529
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD. Length = 529 |
| >gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Score = 206 bits (527), Expect = 8e-56
Identities = 155/547 (28%), Positives = 263/547 (48%), Gaps = 43/547 (7%)
Query: 541 YSPHDSQIKRVVDQVALIFVGLAVVTIPVYLL---QHYFYTLMGEHLTARVRLSMFSAIL 597
Y PH +++ + +I +GL + I +L Q + ++G+ L+ + LS +
Sbjct: 186 YIPH-----KMMGTLGIISIGLIIAYIIQQILSYIQIFLLNVLGQRLSIDIILSYIKHLF 240
Query: 598 SNEIGWFDLDENNTGLLISTLAADATLVRSALADR-LSIIVQNVALTVTAFVIAFILSWR 656
+ +F TG ++S DA+ + ALA LS+ + L + + +
Sbjct: 241 ELPMSFFS--TRRTGEIVSRFT-DASSIIDALASTILSLFLDMWILVIVGLFLVR-QNML 296
Query: 657 LAAVVAASLPLLIGAFVAEQLFLKGFGGDYNRAYSRATSVAREAIANIRTVAAYGIE--- 713
L + S+P+ + + D +A + S E + I T+ + E
Sbjct: 297 LFLLSLLSIPVYAVIIILFKRTFNKLNHDAMQANAVLNSSIIEDLNGIETIKSLTSEAER 356
Query: 714 -KRISIQFASELSQPNKQALLRGHISGFGYG-VSQLLSLCSYALGLWYASVLIKQKGSNF 771
+I +F L NK + + G + + L + LW + L+ +
Sbjct: 357 YSKIDSEFGDYL---NKS--FKYQKADQGQQAIKAVTKLILNVVILWTGAYLVMRGKLTL 411
Query: 772 GDIMKSFMVLIITALAVAETLA-LAPDIVKGSQA---LGPVFGILYRKTAIQPDDPASKE 827
G ++ +F L+ L E + L P + A L V+ + + K+
Sbjct: 412 GQLI-TFNALLSYFLTPLENIINLQPKLQAARVANNRLNEVY-------LVDSEFINKKK 463
Query: 828 VTE---IKGNIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVM 884
TE + G+I + +VS+ Y +I +++L + +VG SGSGKST+ L++
Sbjct: 464 RTELNNLNGDIVINDVSYSYGYGSNI--LSDISLTIKMNSKTTIVGMSGSGKSTLAKLLV 521
Query: 885 RFYDPISGTVLIDGYDIRTLNLRSLRRKIGLVQQEPALFSTTIYENIKYGN-EDASEIEL 943
F+ SG +L++G+ ++ ++ +LR+ I + QEP +FS +I EN+ G E+ S+ E+
Sbjct: 522 GFFQARSGEILLNGFSLKDIDRHTLRQFINYLPQEPYIFSGSILENLLLGAKENVSQDEI 581
Query: 944 MKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSA 1003
A + A I MP GYQ+ + + G +SGGQKQR+A+ARA+L + +L+LDE+TS
Sbjct: 582 WAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQRIALARALLTDSKVLILDESTSN 641
Query: 1004 LDTASENLIQEALDKLMEGRTTIMVAHRLSTIRNADKIAVLQQGKVAEIGSHEQLLRKEN 1063
LDT +E I L L + +T I VAHRLS + +DKI VL GK+ E GSH++LL N
Sbjct: 642 LDTITEKKIVNNLLNLQD-KTIIFVAHRLSVAKQSDKIIVLDHGKIIEQGSHDELL-DRN 699
Query: 1064 GIYKQLI 1070
G Y LI
Sbjct: 700 GFYASLI 706
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair, Transport and binding proteins, Other]. Length = 708 |
| >gnl|CDD|182733 PRK10790, PRK10790, putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Score = 203 bits (519), Expect = 1e-55
Identities = 102/250 (40%), Positives = 152/250 (60%), Gaps = 4/250 (1%)
Query: 193 GDDGITLPKLAGQIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISM 252
G+D L +G+I+ V FAY ++V +N+N SV + A VG +GSGKST+ S+
Sbjct: 330 GNDDRPLQ--SGRIDIDNVSFAY-RDDNLVLQNINLSVPSRGFVALVGHTGSGKSTLASL 386
Query: 253 VQRLYEPTSGKILLDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNILLGKEDASMDR 312
+ Y T G+I LDG L SL LR+ + +V Q+P + A + N+ LG+ D S ++
Sbjct: 387 LMGYYPLTEGEIRLDGRPLSSLSHSVLRQGVAMVQQDPVVLADTFLANVTLGR-DISEEQ 445
Query: 313 VIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATS 372
V +A + LPDG T +GE G LS GQKQ +A+AR +++ P+IL+LDEAT+
Sbjct: 446 VWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQLLALARVLVQTPQILILDEATA 505
Query: 373 ALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRDVDTIMVLKNGQVVESGTHVDLISKG 432
+D+ +E +Q+AL + + T +V+AHRLST+ + DTI+VL GQ VE GTH L++
Sbjct: 506 NIDSGTEQAIQQALAAVREHTTLVVIAHRLSTIVEADTILVLHRGQAVEQGTHQQLLAAQ 565
Query: 433 GEYAALVNLQ 442
G Y + LQ
Sbjct: 566 GRYWQMYQLQ 575
|
Length = 592 |
| >gnl|CDD|200134 TIGR01842, type_I_sec_PrtD, type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Score = 201 bits (513), Expect = 3e-55
Identities = 102/312 (32%), Positives = 161/312 (51%), Gaps = 13/312 (4%)
Query: 124 ALLLWYAGILVRHGDTNGGKAFTTIINVIFSGFALG---QAAPNLAAIAKGKAAAANIIS 180
+L A + + T G I I G AL A + + A +
Sbjct: 241 LVLGLGAYLAIDGEITPG----MMIAGSILVGRALAPIDGAIGGWKQFSGARQAYKRLNE 296
Query: 181 IIKENSHSSERPGDDGITLPKLAGQIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVG 240
++ D + LP+ G + V P ++FS+ AG+ A +G
Sbjct: 297 LLAN-----YPSRDPAMPLPEPEGHLSVENVTIVPPGGKKPTLRGISFSLQAGEALAIIG 351
Query: 241 PSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGLVSQEPALFATSIANN 300
PSGSGKST+ ++ ++ PTSG + LDG DLK + + +G + Q+ LF ++A N
Sbjct: 352 PSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDRETFGKHIGYLPQDVELFPGTVAEN 411
Query: 301 ILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLR 360
I E+A +++IEAAK A H + LPDGY T +G GG LSGGQ+QRIA+ARA+
Sbjct: 412 IARFGENADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALARALYG 471
Query: 361 NPKILLLDEATSALDAESELIVQRALEKIMSNR-TTIVVAHRLSTVRDVDTIMVLKNGQV 419
+PK+++LDE S LD E E + A++ + + T +V+ HR S + VD I+VL++G++
Sbjct: 472 DPKLVVLDEPNSNLDEEGEQALANAIKALKARGITVVVITHRPSLLGCVDKILVLQDGRI 531
Query: 420 VESGTHVDLISK 431
G ++++K
Sbjct: 532 ARFGERDEVLAK 543
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 544 |
| >gnl|CDD|182733 PRK10790, PRK10790, putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Score = 199 bits (509), Expect = 2e-54
Identities = 96/242 (39%), Positives = 152/242 (62%), Gaps = 4/242 (1%)
Query: 833 GNIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISG 892
G I++ NVSF Y R D + +N+NL V + +A+VG +GSGKST+ SL+M +Y G
Sbjct: 339 GRIDIDNVSFAY--RDDNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEG 396
Query: 893 TVLIDGYDIRTLNLRSLRRKIGLVQQEPALFSTTIYENIKYGNEDASEIELMKATKAANA 952
+ +DG + +L+ LR+ + +VQQ+P + + T N+ G D SE ++ +A +
Sbjct: 397 EIRLDGRPLSSLSHSVLRQGVAMVQQDPVVLADTFLANVTLG-RDISEEQVWQALETVQL 455
Query: 953 HGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLI 1012
+P+G + +G++G LS GQKQ +A+AR +++ P IL+LDEAT+ +D+ +E I
Sbjct: 456 AELARSLPDGLYTPLGEQGNNLSVGQKQLLALARVLVQTPQILILDEATANIDSGTEQAI 515
Query: 1013 QEALDKLMEGRTTIMVAHRLSTIRNADKIAVLQQGKVAEIGSHEQLLRKENGIYKQLIRL 1072
Q+AL + E T +++AHRLSTI AD I VL +G+ E G+H+QLL + G Y Q+ +L
Sbjct: 516 QQALAAVREHTTLVVIAHRLSTIVEADTILVLHRGQAVEQGTHQQLLAAQ-GRYWQMYQL 574
Query: 1073 QQ 1074
Q
Sbjct: 575 QL 576
|
Length = 592 |
| >gnl|CDD|215640 PLN03232, PLN03232, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 207 bits (527), Expect = 3e-54
Identities = 230/968 (23%), Positives = 431/968 (44%), Gaps = 81/968 (8%)
Query: 137 GDTNGGKAFTTIINVIFSGFALGQAAPNLAAIAKGKAAAANI-ISIIKENSHSSERPGDD 195
GD +AFT++ S FA+ ++ N+ + AN+ + I+E S ER
Sbjct: 550 GDLTPARAFTSL-----SLFAVLRSPLNMLPNLLSQVVNANVSLQRIEELLLSEERILAQ 604
Query: 196 GITLPKLAGQIEFSEVCFAYPSR-PHMVFENLNFSVDAGKTFAFVGPSGSGKSTIIS-MV 253
L A I F++ S+ ++N + G A VG +G GK+++IS M+
Sbjct: 605 NPPLQPGAPAISIKNGYFSWDSKTSKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAML 664
Query: 254 QRLYEPTSGKILLDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNILLGKEDASMDRV 313
L + +++ G + V Q +F ++ NIL G D +R
Sbjct: 665 GELSHAETSSVVIRG-------------SVAYVPQVSWIFNATVRENILFG-SDFESERY 710
Query: 314 IEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSA 373
A ++ LP T++GE G +SGGQKQR+++ARAV N I + D+ SA
Sbjct: 711 WRAIDVTALQHDLDLLPGRDLTEIGERGVNISGGQKQRVSMARAVYSNSDIYIFDDPLSA 770
Query: 374 LDAE-SELIVQRALEKIMSNRTTIVVAHRLSTVRDVDTI------MVLKNGQVVESGTHV 426
LDA + + ++ + +T ++V ++L + +D I M+ + G E
Sbjct: 771 LDAHVAHQVFDSCMKDELKGKTRVLVTNQLHFLPLMDRIILVSEGMIKEEGTFAELSKSG 830
Query: 427 DLISKGGEYAALVNLQSSEHLSNPSSICYSGSSRYSSFRDFPSSRRYDVEFESSKRRELQ 486
L K E A ++ + +N +I G + S R + + R +
Sbjct: 831 SLFKKLMENAGKMDATQEVN-TNDENILKLGPTVTIDV----SERNLGSTKQGKRGRSVL 885
Query: 487 SSDQSFAPSPSIWE-LLKLNAAE---WPYAVLGSVGAILAGMEAPLFALGITHILTAFYS 542
+ W L++ N A W +L ++ + + + + L+ ++
Sbjct: 886 VKQEERETGIISWNVLMRYNKAVGGLWVVMIL-----LVCYLTTEVLRVSSSTWLS-IWT 939
Query: 543 PHDSQIKRVVDQVALIFVGLAVVTIPVYLLQHYFYTLMGEHLTARVRLSMFSAILSNEIG 602
+ +++ L + V ++ H R+ +M ++IL +
Sbjct: 940 DQSTPKSYSPGFYIVVYALLGFGQVAVTFTNSFWLISSSLHAAKRLHDAMLNSILRAPML 999
Query: 603 WFDLDENNTGLLISTLAADATLVRSALADRLSIIVQNVALTVTAFVIAFILSWRLAAVVA 662
+F N TG +I+ + D + +A+ +++ + + ++ F + +S +
Sbjct: 1000 FFH--TNPTGRVINRFSKDIGDIDRNVANLMNMFMNQLWQLLSTFALIGTVS---TISLW 1054
Query: 663 ASLPLLIGAFVAEQLFLKGFGGDYNRAYSRATSVAR--------EAIANIRTVAAYGIEK 714
A +PLLI F A L+ + +R R SV R EA+ + ++ AY
Sbjct: 1055 AIMPLLI-LFYAAYLYYQ----STSREVRRLDSVTRSPIYAQFGEALNGLSSIRAYKAYD 1109
Query: 715 RISIQFASELSQPNKQALLRGHISGFGYGVSQLLSLCSYALGLWYASVLIKQKGSN---- 770
R++ + S N + S + +L +L + L A+ + + G+
Sbjct: 1110 RMAK--INGKSMDNNIRFTLANTSSNRWLTIRLETLGGVMIWL-TATFAVLRNGNAENQA 1166
Query: 771 -FGDIMK---SFMVLIITALA-VAETLALAPDIVKGSQALGPVFGILYRKTAIQPDD-PA 824
F M S+ + I T L+ V + A + + + +G + TAI ++ P
Sbjct: 1167 GFASTMGLLLSYTLNITTLLSGVLRQASKAENSLNSVERVGNYIDLPSEATAIIENNRPV 1226
Query: 825 SKEVTEIKGNIELRNVSFKYPVRPDIT-IFENLNLKVSAGRSLAVVGQSGSGKSTVISLV 883
S +G+I+ +V +Y RP + + L+ VS + VVG++G+GKS++++ +
Sbjct: 1227 SG--WPSRGSIKFEDVHLRY--RPGLPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNAL 1282
Query: 884 MRFYDPISGTVLIDGYDIRTLNLRSLRRKIGLVQQEPALFSTTIYENIKYGNEDASEIEL 943
R + G ++ID D+ L LRR + ++ Q P LFS T+ NI +E ++ +L
Sbjct: 1283 FRIVELEKGRIMIDDCDVAKFGLTDLRRVLSIIPQSPVLFSGTVRFNIDPFSEH-NDADL 1341
Query: 944 MKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSA 1003
+A + A+ I R P G + V + G S GQ+Q +++ARA+L+ IL+LDEAT++
Sbjct: 1342 WEALERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLSLARALLRRSKILVLDEATAS 1401
Query: 1004 LDTASENLIQEALDKLMEGRTTIMVAHRLSTIRNADKIAVLQQGKVAEIGSHEQLLRKEN 1063
+D +++LIQ + + + T +++AHRL+TI + DKI VL G+V E S ++LL ++
Sbjct: 1402 VDVRTDSLIQRTIREEFKSCTMLVIAHRLNTIIDCDKILVLSSGQVLEYDSPQELLSRDT 1461
Query: 1064 GIYKQLIR 1071
+ +++
Sbjct: 1462 SAFFRMVH 1469
|
Length = 1495 |
| >gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Score = 200 bits (510), Expect = 1e-53
Identities = 127/436 (29%), Positives = 218/436 (50%), Gaps = 24/436 (5%)
Query: 15 VGFAVGFTSVWQLTLLTLAVVPLIAVAGGAYTITMSTLSEKGEAAYGEAGKVAEEIISQV 74
VG + ++ L LL+L +P+ AV + T + L+ A E ++ +
Sbjct: 286 VGLFLVRQNM-LLFLLSLLSIPVYAVIIILFKRTFNKLNHDAMQANAVLNSSIIEDLNGI 344
Query: 75 RAVYAFVGEA---KAIES-YSHSLKEALKQGKKSGVAKGIGVGLTYGLLFCAWALLLWYA 130
+ + EA I+S + L ++ K K + I L ++LW
Sbjct: 345 ETIKSLTSEAERYSKIDSEFGDYLNKSFKYQKADQGQQAIKAVTKLILN----VVILWTG 400
Query: 131 GILVRHGDTNGGKAFTTIINVIFSGFALG-QAAPNL-AAIAKGKAAAANIISIIKENSHS 188
LV G G+ T N + S F + NL + + A + + +S
Sbjct: 401 AYLVMRGKLTLGQLIT--FNALLSYFLTPLENIINLQPKLQAARVANNRLNEVYLVDSEF 458
Query: 189 SERPGDDGITLPKLAGQIEFSEVCFAYP-SRPHMVFENLNFSVDAGKTFAFVGPSGSGKS 247
+ + G I ++V ++Y + +++ ++ VG SGSGKS
Sbjct: 459 INKKKRTELNNLN--GDIVINDVSYSYGYGSN--ILSDISLTIKMNSKTTIVGMSGSGKS 514
Query: 248 TIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNILLG-KE 306
T+ ++ ++ SG+ILL+G LK + LR+ + + QEP +F+ SI N+LLG KE
Sbjct: 515 TLAKLLVGFFQARSGEILLNGFSLKDIDRHTLRQFINYLPQEPYIFSGSILENLLLGAKE 574
Query: 307 DASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILL 366
+ S D + A + A +E +P GYQT++ E G+ +SGGQKQRIA+ARA+L + K+L+
Sbjct: 575 NVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQRIALARALLTDSKVLI 634
Query: 367 LDEATSALDAESELIVQRALEKI--MSNRTTIVVAHRLSTVRDVDTIMVLKNGQVVESGT 424
LDE+TS LD +E ++ + + + ++T I VAHRLS + D I+VL +G+++E G+
Sbjct: 635 LDESTSNLDTITE---KKIVNNLLNLQDKTIIFVAHRLSVAKQSDKIIVLDHGKIIEQGS 691
Query: 425 HVDLISKGGEYAALVN 440
H +L+ + G YA+L++
Sbjct: 692 HDELLDRNGFYASLIH 707
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair, Transport and binding proteins, Other]. Length = 708 |
| >gnl|CDD|236865 PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 196 bits (501), Expect = 2e-53
Identities = 84/249 (33%), Positives = 148/249 (59%), Gaps = 3/249 (1%)
Query: 823 PASKEVTEIKGNIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISL 882
P + + ++ L NVSF YP +P + + L+L++ AG +A++G++G GKST++ L
Sbjct: 327 PTTSTAAADQVSLTLNNVSFTYPDQPQ-PVLKGLSLQIKAGEKVALLGRTGCGKSTLLQL 385
Query: 883 VMRFYDPISGTVLIDGYDIRTLNLRSLRRKIGLVQQEPALFSTTIYENIKYGNEDASEIE 942
+ R +DP G +L++G I + +LR+ I +V Q LFS T+ +N+ +AS+
Sbjct: 386 LTRAWDPQQGEILLNGQPIADYSEAALRQAISVVSQRVHLFSATLRDNLLLAAPNASDEA 445
Query: 943 LMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATS 1002
L++ + + +G + +G+ G QLSGG+++R+ IARA+L + +LLLDE T
Sbjct: 446 LIEVLQQVGLEKLLED-DKGLNAWLGEGGRQLSGGEQRRLGIARALLHDAPLLLLDEPTE 504
Query: 1003 ALDTASENLIQEALDKLMEGRTTIMVAHRLSTIRNADKIAVLQQGKVAEIGSHEQLLRKE 1062
LD +E I E L + + +T +M+ HRL+ + D+I V+ G++ E G+H++LL ++
Sbjct: 505 GLDAETERQILELLAEHAQNKTVLMITHRLTGLEQFDRICVMDNGQIIEQGTHQELLAQQ 564
Query: 1063 NGIYKQLIR 1071
Y QL +
Sbjct: 565 GR-YYQLKQ 572
|
Length = 574 |
| >gnl|CDD|226969 COG4618, ArpD, ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Score = 195 bits (498), Expect = 6e-53
Identities = 92/243 (37%), Positives = 146/243 (60%), Gaps = 9/243 (3%)
Query: 194 DDGITLPKLAGQIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMV 253
+ + LP G + + A P + + + ++F++ AG+ +GPSGSGKST+ ++
Sbjct: 323 AERMPLPAPQGALSVERLTAAPPGQKKPILKGISFALQAGEALGIIGPSGSGKSTLARLL 382
Query: 254 QRLYEPTSGKILLDGHDLKSLQLKWLREQM----GLVSQEPALFATSIANNILLGKEDAS 309
++ PTSG + LDG DL+ W REQ+ G + Q+ LF +IA NI E+A
Sbjct: 383 VGIWPPTSGSVRLDGADLRQ----WDREQLGRHIGYLPQDVELFDGTIAENIARFGEEAD 438
Query: 310 MDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDE 369
++VIEAA+ A H + LP GY T++GEGG LSGGQ+QRIA+ARA+ +P +++LDE
Sbjct: 439 PEKVIEAARLAGVHELILRLPQGYDTRIGEGGATLSGGQRQRIALARALYGDPFLVVLDE 498
Query: 370 ATSALDAESELIVQRALEKIMSN-RTTIVVAHRLSTVRDVDTIMVLKNGQVVESGTHVDL 428
S LD+E E + A+ + T +V+AHR S + VD I+VL++G++ G ++
Sbjct: 499 PNSNLDSEGEAALAAAILAAKARGGTVVVIAHRPSALASVDKILVLQDGRIAAFGPREEV 558
Query: 429 ISK 431
++K
Sbjct: 559 LAK 561
|
Length = 580 |
| >gnl|CDD|213269 cd03369, ABCC_NFT1, ATP-binding cassette domain 2 of NFT1, subfamily C | Back alignment and domain information |
|---|
Score = 173 bits (440), Expect = 3e-49
Identities = 83/223 (37%), Positives = 131/223 (58%), Gaps = 22/223 (9%)
Query: 833 GNIELRNVSFKYPVRPDI-TIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPIS 891
G IE+ N+S +Y PD+ + +N++ KV AG + +VG++G+GKST+I + RF +
Sbjct: 5 GEIEVENLSVRY--APDLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEE 62
Query: 892 GTVLIDGYDIRTLNLRSLRRKIGLVQQEPALFSTTIYENIKYGNEDASEIELMKATKAAN 951
G + IDG DI T+ L LR + ++ Q+P LFS TI N+ +E S+ E+ A +
Sbjct: 63 GKIEIDGIDISTIPLEDLRSSLTIIPQDPTLFSGTIRSNLDPFDE-YSDEEIYGALR--- 118
Query: 952 AHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENL 1011
V + G+ LS GQ+Q + +ARA+LK P +L+LDEAT+++D A++ L
Sbjct: 119 ---------------VSEGGLNLSQGQRQLLCLARALLKRPRVLVLDEATASIDYATDAL 163
Query: 1012 IQEALDKLMEGRTTIMVAHRLSTIRNADKIAVLQQGKVAEIGS 1054
IQ+ + + T + +AHRL TI + DKI V+ G+V E
Sbjct: 164 IQKTIREEFTNSTILTIAHRLRTIIDYDKILVMDAGEVKEYDH 206
|
Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (multidrug resistance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. Length = 207 |
| >gnl|CDD|213227 cd03260, ABC_PstB_phosphate_transporter, ATP-binding cassette domain of the phosphate transport system | Back alignment and domain information |
|---|
Score = 173 bits (442), Expect = 3e-49
Identities = 87/242 (35%), Positives = 130/242 (53%), Gaps = 33/242 (13%)
Query: 835 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYD-----P 889
IELR+++ Y D ++++L + G A++G SG GKST++ L+ R D P
Sbjct: 1 IELRDLNVYYG---DKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAP 57
Query: 890 ISGTVLIDGYDIRTLNLR--SLRRKIGLVQQEPALFSTTIYENIKYG--------NEDAS 939
G VL+DG DI L++ LRR++G+V Q+P F +IY+N+ YG E+
Sbjct: 58 DEGEVLLDGKDIYDLDVDVLELRRRVGMVFQKPNPFPGSIYDNVAYGLRLHGIKLKEELD 117
Query: 940 EIELMKATKAANAHGFISRMPEGYQSHVGDR--GVQLSGGQKQRVAIARAILKNPSILLL 997
E KAA + + V DR + LSGGQ+QR+ +ARA+ P +LLL
Sbjct: 118 ERVEEALRKAA--------LWD----EVKDRLHALGLSGGQQQRLCLARALANEPEVLLL 165
Query: 998 DEATSALDTASENLIQEALDKLMEGRTTIMVAHRLS-TIRNADKIAVLQQGKVAEIGSHE 1056
DE TSALD S I+E + +L + T ++V H + R AD+ A L G++ E G E
Sbjct: 166 DEPTSALDPISTAKIEELIAELKKEYTIVIVTHNMQQAARVADRTAFLLNGRLVEFGPTE 225
Query: 1057 QL 1058
Q+
Sbjct: 226 QI 227
|
Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). Length = 227 |
| >gnl|CDD|213228 cd03261, ABC_Org_Solvent_Resistant, ATP-binding cassette transport system involved in resistant to organic solvents | Back alignment and domain information |
|---|
Score = 172 bits (439), Expect = 1e-48
Identities = 93/251 (37%), Positives = 137/251 (54%), Gaps = 34/251 (13%)
Query: 835 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTV 894
IELR ++ + R T+ + ++L V G LA++G SGSGKST++ L++ P SG V
Sbjct: 1 IELRGLTKSFGGR---TVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEV 57
Query: 895 LIDGYDIRTLN---LRSLRRKIGLVQQEPALF-STTIYENI-----KYGNEDASEIE--- 942
LIDG DI L+ L LRR++G++ Q ALF S T++EN+ ++ EI
Sbjct: 58 LIDGEDISGLSEAELYRLRRRMGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIV 117
Query: 943 LMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATS 1002
L K +A G P +LSGG K+RVA+ARA+ +P +LL DE T+
Sbjct: 118 LEK-LEAVGLRGAEDLYPA-----------ELSGGMKKRVALARALALDPELLLYDEPTA 165
Query: 1003 ALD----TASENLIQEALDKLMEGRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGSHEQ 1057
LD ++LI+ +L G T+IMV H L T AD+IAVL GK+ G+ E+
Sbjct: 166 GLDPIASGVIDDLIRSLKKEL--GLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGTPEE 223
Query: 1058 LLRKENGIYKQ 1068
L ++ + +Q
Sbjct: 224 LRASDDPLVRQ 234
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|234041 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Score = 179 bits (457), Expect = 5e-48
Identities = 115/474 (24%), Positives = 204/474 (43%), Gaps = 28/474 (5%)
Query: 574 HYFYTLMGEHLT----ARVRLSMFSAILSNEIGWFDLDENNTGLLISTLAADATLVRSAL 629
Y L+G +R+ ++ + + G L+ L AD ++
Sbjct: 70 RYLERLVGHDAALRSLGALRVRVYERLARQALAG--RRRLRRGDLLGRLGADVDALQDLY 127
Query: 630 ADRLSIIVQNVALTVTAFVIAFILSWRLAAVVAASLPLLIGAFVAEQLFLK-GFGGDYNR 688
+ + + A +LS A ++AA L L+ FVA + L+ +
Sbjct: 128 VRVIVPAGVALVVGAAAVAAIAVLSVPAALILAAGL--LLAGFVAPLVSLRAARAAEQAL 185
Query: 689 AYSRA--TSVAREAIANIRTVAAYGIEKRISIQFASELSQPNKQALLRGHISGFGYGVSQ 746
A R + +A+ + A G Q + + + G ++
Sbjct: 186 ARLRGELAAQLTDALDGAAELVASGALPAALAQVEEADRELTRAERRAAAATALGAALTL 245
Query: 747 LLSLCSYALGLWYASVLIKQKGSNFGDIMKSFMVLIITALAVAETLALAPDIVKGSQALG 806
L + + LW + + VL++ LA E A P Q L
Sbjct: 246 LAAGLAVLGALWAG---GPAVADGRLAPV-TLAVLVLLPLAAFEAFAALPAAA---QQLT 298
Query: 807 PVFGILYRKTAIQP--------DDPASKEVTEIKGNIELRNVSFKYPVRPDITIFENLNL 858
V R + PA+ V K +ELR++S YP + + ++L
Sbjct: 299 RVRAAAERIVEVLDAAGPVAEGSAPAAGAVGLGKPTLELRDLSAGYP--GAPPVLDGVSL 356
Query: 859 KVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRKIGLVQQ 918
+ G +A++G SGSGKST+++ + DP+ G V +DG + +L+ +RR++ + Q
Sbjct: 357 DLPPGERVAILGPSGSGKSTLLATLAGLLDPLQGEVTLDGVPVSSLDQDEVRRRVSVCAQ 416
Query: 919 EPALFSTTIYENIKYGNEDASEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQ 978
+ LF TT+ EN++ DA++ EL A + ++ +P+G + +G+ G +LSGG+
Sbjct: 417 DAHLFDTTVRENLRLARPDATDEELWAALERVGLADWLRALPDGLDTVLGEGGARLSGGE 476
Query: 979 KQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLMEGRTTIMVAHRL 1032
+QR+A+ARA+L + ILLLDE T LD + + + E L + GRT +++ H L
Sbjct: 477 RQRLALARALLADAPILLLDEPTEHLDAETADELLEDLLAALSGRTVVLITHHL 530
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Length = 530 |
| >gnl|CDD|213213 cd03246, ABCC_Protease_Secretion, ATP-binding cassette domain of PrtD, subfamily C | Back alignment and domain information |
|---|
Score = 168 bits (427), Expect = 6e-48
Identities = 76/216 (35%), Positives = 110/216 (50%), Gaps = 44/216 (20%)
Query: 835 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTV 894
+E+ NVSF+YP + + N++ + G SLA++G SGSGKST+ L++ P SG V
Sbjct: 1 LEVENVSFRYPGA-EPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRV 59
Query: 895 LIDGYDIRTLNLRSLRRKIGLVQQEPALFSTTIYENIKYGNEDASEIELMKATKAANAHG 954
+DG DI + L +G + Q+ LFS +I ENI
Sbjct: 60 RLDGADISQWDPNELGDHVGYLPQDDELFSGSIAENI----------------------- 96
Query: 955 FISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQE 1014
LSGGQ+QR+ +ARA+ NP IL+LDE S LD E + +
Sbjct: 97 -------------------LSGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQ 137
Query: 1015 ALDKL-MEGRTTIMVAHRLSTIRNADKIAVLQQGKV 1049
A+ L G T I++AHR T+ +AD+I VL+ G+V
Sbjct: 138 AIAALKAAGATRIVIAHRPETLASADRILVLEDGRV 173
|
This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA. Length = 173 |
| >gnl|CDD|200134 TIGR01842, type_I_sec_PrtD, type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Score = 179 bits (456), Expect = 8e-48
Identities = 85/243 (34%), Positives = 140/243 (57%), Gaps = 2/243 (0%)
Query: 820 PDDPASKEVTEIKGNIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTV 879
P + + E +G++ + NV+ P ++ + AG +LA++G SGSGKST+
Sbjct: 302 PSRDPAMPLPEPEGHLSVENVTIVPP-GGKKPTLRGISFSLQAGEALAIIGPSGSGKSTL 360
Query: 880 ISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRKIGLVQQEPALFSTTIYENIKYGNEDAS 939
L++ + P SG+V +DG D++ + + + IG + Q+ LF T+ ENI E+A
Sbjct: 361 ARLIVGIWPPTSGSVRLDGADLKQWDRETFGKHIGYLPQDVELFPGTVAENIARFGENAD 420
Query: 940 EIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDE 999
++++A K A H I R+P+GY + +G G LSGGQ+QR+A+ARA+ +P +++LDE
Sbjct: 421 PEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALARALYGDPKLVVLDE 480
Query: 1000 ATSALDTASENLIQEALDKL-MEGRTTIMVAHRLSTIRNADKIAVLQQGKVAEIGSHEQL 1058
S LD E + A+ L G T +++ HR S + DKI VLQ G++A G +++
Sbjct: 481 PNSNLDEEGEQALANAIKALKARGITVVVITHRPSLLGCVDKILVLQDGRIARFGERDEV 540
Query: 1059 LRK 1061
L K
Sbjct: 541 LAK 543
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 544 |
| >gnl|CDD|224058 COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 172 bits (439), Expect = 2e-47
Identities = 87/247 (35%), Positives = 136/247 (55%), Gaps = 15/247 (6%)
Query: 835 IELRNVSFKYPVR--PDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISG 892
IEL NVS + +T ++++L++ G ++G SG+GKST++ L+ P SG
Sbjct: 2 IELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSG 61
Query: 893 TVLIDGYDIRTLN---LRSLRRKIGLVQQEPALFST-TIYENIKYGNEDASEIELMKATK 948
+V +DG D+ L+ LR LR+KIG++ Q L S+ T++EN+ + E A + KA
Sbjct: 62 SVFVDGQDLTALSEAELRQLRQKIGMIFQHFNLLSSRTVFENVAFPLELAG---VPKAEI 118
Query: 949 AANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTAS 1008
+ + G QLSGGQKQRVAIARA+ NP ILL DEATSALD +
Sbjct: 119 KQRVAELLELV--GLSDKADRYPAQLSGGQKQRVAIARALANNPKILLCDEATSALDPET 176
Query: 1009 ENLIQEALDKLME--GRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGSHEQLLRK-ENG 1064
I E L + G T +++ H + ++ D++AVL QG++ E G+ ++ ++
Sbjct: 177 TQSILELLKDINRELGLTIVLITHEMEVVKRICDRVAVLDQGRLVEEGTVSEVFANPKHA 236
Query: 1065 IYKQLIR 1071
I ++ I
Sbjct: 237 ITQEFIG 243
|
Length = 339 |
| >gnl|CDD|213192 cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 168 bits (427), Expect = 3e-47
Identities = 88/223 (39%), Positives = 122/223 (54%), Gaps = 22/223 (9%)
Query: 836 ELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVL 895
EL+N+SF YP ++++L + G + +VG +GSGKST++ L+ P SG VL
Sbjct: 1 ELKNLSFSYPDG-ARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVL 59
Query: 896 IDGYDIRTLNLRSLRRKIGLVQQEPA--LFSTTIYENIKYG----NEDASEIE--LMKAT 947
+DG D+ L+L+ LRRK+GLV Q P F T+ E + +G EIE + +A
Sbjct: 60 VDGKDLTKLSLKELRRKVGLVFQNPDDQFFGPTVEEEVAFGLENLGLPEEEIEERVEEAL 119
Query: 948 KAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTA 1007
+ G R P LSGGQKQRVAIA + +P ILLLDE T+ LD A
Sbjct: 120 ELVGLEGLRDRSPF-----------TLSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPA 168
Query: 1008 SENLIQEALDKLM-EGRTTIMVAHRLSTIRN-ADKIAVLQQGK 1048
+ E L KL EG+T I+V H L + AD++ VL+ GK
Sbjct: 169 GRRELLELLKKLKAEGKTIIIVTHDLDLLLELADRVIVLEDGK 211
|
Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 211 |
| >gnl|CDD|234041 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Score = 177 bits (450), Expect = 4e-47
Identities = 109/418 (26%), Positives = 193/418 (46%), Gaps = 37/418 (8%)
Query: 7 LRYLSQFFVGFAVGFTSVWQLTLLTLAVVPLIAVAGGAYTITMSTLSEKGEAAYGEAGKV 66
+R + V VG +V + +L++ ++A +S A +
Sbjct: 128 VRVIVPAGVALVVGAAAVAAIAVLSVPAALILAAGLLLAGFVAPLVS-------LRAARA 180
Query: 67 AEEIISQVRAVY---------------AFVGEAKAIESYSHSLKEALKQGKKSGVAKGIG 111
AE+ ++++R A A+ + +E + +++ A +G
Sbjct: 181 AEQALARLRGELAAQLTDALDGAAELVASGALPAALAQVEEADRELTRAERRAAAATALG 240
Query: 112 VGLTYGLLFCAWALL--LWYAGILVRHGDTNGGKAFTTIINVIFSGF-ALGQAAPNLAAI 168
LT LL A+L LW G V G ++ + + F A +
Sbjct: 241 AALT--LLAAGLAVLGALWAGGPAVADG-RLAPVTLAVLVLLPLAAFEAFAALPAAAQQL 297
Query: 169 AKGKAAAANIISIIKENSH----SSERPGDDGITLPKLAGQIEFSEVCFAYPSRPHMVFE 224
+ +AAA I+ ++ S+ G G+ P +E ++ YP P V +
Sbjct: 298 TRVRAAAERIVEVLDAAGPVAEGSAPAAGAVGLGKP----TLELRDLSAGYPGAP-PVLD 352
Query: 225 NLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMG 284
++ + G+ A +GPSGSGKST+++ + L +P G++ LDG + SL +R ++
Sbjct: 353 GVSLDLPPGERVAILGPSGSGKSTLLATLAGLLDPLQGEVTLDGVPVSSLDQDEVRRRVS 412
Query: 285 LVSQEPALFATSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQL 344
+ +Q+ LF T++ N+ L + DA+ + + A + ++ LPDG T +GEGG +L
Sbjct: 413 VCAQDAHLFDTTVRENLRLARPDATDEELWAALERVGLADWLRALPDGLDTVLGEGGARL 472
Query: 345 SGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRL 402
SGG++QR+A+ARA+L + ILLLDE T LDAE+ + L +S RT +++ H L
Sbjct: 473 SGGERQRLALARALLADAPILLLDEPTEHLDAETADELLEDLLAALSGRTVVLITHHL 530
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Length = 530 |
| >gnl|CDD|226969 COG4618, ArpD, ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Score = 177 bits (450), Expect = 9e-47
Identities = 84/231 (36%), Positives = 139/231 (60%), Gaps = 2/231 (0%)
Query: 832 KGNIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPIS 891
+G + + ++ P + + + ++ + AG +L ++G SGSGKST+ L++ + P S
Sbjct: 332 QGALSVERLTAAPPGQKKPIL-KGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTS 390
Query: 892 GTVLIDGYDIRTLNLRSLRRKIGLVQQEPALFSTTIYENIKYGNEDASEIELMKATKAAN 951
G+V +DG D+R + L R IG + Q+ LF TI ENI E+A ++++A + A
Sbjct: 391 GSVRLDGADLRQWDREQLGRHIGYLPQDVELFDGTIAENIARFGEEADPEKVIEAARLAG 450
Query: 952 AHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENL 1011
H I R+P+GY + +G+ G LSGGQ+QR+A+ARA+ +P +++LDE S LD+ E
Sbjct: 451 VHELILRLPQGYDTRIGEGGATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAA 510
Query: 1012 IQEALDKL-MEGRTTIMVAHRLSTIRNADKIAVLQQGKVAEIGSHEQLLRK 1061
+ A+ G T +++AHR S + + DKI VLQ G++A G E++L K
Sbjct: 511 LAAAILAAKARGGTVVVIAHRPSALASVDKILVLQDGRIAAFGPREEVLAK 561
|
Length = 580 |
| >gnl|CDD|213269 cd03369, ABCC_NFT1, ATP-binding cassette domain 2 of NFT1, subfamily C | Back alignment and domain information |
|---|
Score = 165 bits (420), Expect = 1e-46
Identities = 77/223 (34%), Positives = 126/223 (56%), Gaps = 23/223 (10%)
Query: 204 GQIEFSEVCFAYPSRPHM--VFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTS 261
G+IE + Y P + V +N++F V AG+ VG +G+GKST+I + R E
Sbjct: 5 GEIEVENLSVRY--APDLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEE 62
Query: 262 GKILLDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNILLGKEDASMDRVIEAAKAAN 321
GKI +DG D+ ++ L+ LR + ++ Q+P LF+ +I +N L D D I A
Sbjct: 63 GKIEIDGIDISTIPLEDLRSSLTIIPQDPTLFSGTIRSN--LDPFDEYSDEEIYGA---- 116
Query: 322 AHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELI 381
+V EGG LS GQ+Q + +ARA+L+ P++L+LDEAT+++D ++ +
Sbjct: 117 -------------LRVSEGGLNLSQGQRQLLCLARALLKRPRVLVLDEATASIDYATDAL 163
Query: 382 VQRALEKIMSNRTTIVVAHRLSTVRDVDTIMVLKNGQVVESGT 424
+Q+ + + +N T + +AHRL T+ D D I+V+ G+V E
Sbjct: 164 IQKTIREEFTNSTILTIAHRLRTIIDYDKILVMDAGEVKEYDH 206
|
Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (multidrug resistance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. Length = 207 |
| >gnl|CDD|213226 cd03259, ABC_Carb_Solutes_like, ATP-binding cassette domain of the carbohydrate and solute transporters-like | Back alignment and domain information |
|---|
Score = 164 bits (418), Expect = 3e-46
Identities = 81/229 (35%), Positives = 124/229 (54%), Gaps = 26/229 (11%)
Query: 835 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTV 894
+EL+ +S Y + ++L+L V G LA++G SG GK+T++ L+ P SG +
Sbjct: 1 LELKGLSKTYG---SVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEI 57
Query: 895 LIDGYDIRTLNLRSLRRKIGLVQQEPALFST-TIYENIKYG------NEDASEIELMKAT 947
LIDG D+ + RR IG+V Q+ ALF T+ ENI +G + + +
Sbjct: 58 LIDGRDVTGVPPE--RRNIGMVFQDYALFPHLTVAENIAFGLKLRGVPKAEIRARVRELL 115
Query: 948 KAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTA 1007
+ G ++R P +LSGGQ+QRVA+ARA+ + PS+LLLDE SALD
Sbjct: 116 ELVGLEGLLNRYPH-----------ELSGGQQQRVALARALAREPSLLLLDEPLSALDAK 164
Query: 1008 SENLIQEALDKLME--GRTTIMVAHRLS-TIRNADKIAVLQQGKVAEIG 1053
++E L +L G TTI V H + AD+IAV+ +G++ ++G
Sbjct: 165 LREELREELKELQRELGITTIYVTHDQEEALALADRIAVMNEGRIVQVG 213
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 213 |
| >gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding protein-dependent transport systems | Back alignment and domain information |
|---|
Score = 162 bits (413), Expect = 6e-46
Identities = 81/220 (36%), Positives = 116/220 (52%), Gaps = 48/220 (21%)
Query: 835 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTV 894
+EL+NVS +Y T+ +++L + AG +A++G SGSGKST++ + +P SG++
Sbjct: 1 LELKNVSKRYG---QKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSI 57
Query: 895 LIDGYDIRTLN--LRSLRRKIGLVQQEPALFST-TIYENIKYGNEDASEIELMKATKAAN 951
LIDG D+ L L LRR+IG+V Q+ ALF T+ ENI G
Sbjct: 58 LIDGEDLTDLEDELPPLRRRIGMVFQDFALFPHLTVLENIALG----------------- 100
Query: 952 AHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENL 1011
LSGGQ+QRVA+ARA+ +P +LLLDE TSALD +
Sbjct: 101 ----------------------LSGGQQQRVALARALAMDPDVLLLDEPTSALDPITRRE 138
Query: 1012 IQEALDKL--MEGRTTIMVAHRLS-TIRNADKIAVLQQGK 1048
++ L L G T ++V H L R AD++ VL+ GK
Sbjct: 139 VRALLKSLQAQLGITVVLVTHDLDEAARLADRVVVLRDGK 178
|
This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 178 |
| >gnl|CDD|213227 cd03260, ABC_PstB_phosphate_transporter, ATP-binding cassette domain of the phosphate transport system | Back alignment and domain information |
|---|
Score = 162 bits (413), Expect = 3e-45
Identities = 75/235 (31%), Positives = 121/235 (51%), Gaps = 30/235 (12%)
Query: 206 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYE-----PT 260
IE ++ Y ++++ + G+ A +GPSG GKST++ ++ RL + P
Sbjct: 1 IELRDLNVYY--GDKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPD 58
Query: 261 SGKILLDGHDLKSLQLK--WLREQMGLVSQEPALFATSIANNILLG-------KEDASMD 311
G++LLDG D+ L + LR ++G+V Q+P F SI +N+ G ++ +
Sbjct: 59 EGEVLLDGKDIYDLDVDVLELRRRVGMVFQKPNPFPGSIYDNVAYGLRLHGIKLKEELDE 118
Query: 312 RVIEAAKAANAHSFVEGLPDGYQTQVGE--GGTQLSGGQKQRIAIARAVLRNPKILLLDE 369
RV EA + A L D +V + LSGGQ+QR+ +ARA+ P++LLLDE
Sbjct: 119 RVEEALRKA-------ALWD----EVKDRLHALGLSGGQQQRLCLARALANEPEVLLLDE 167
Query: 370 ATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRDV-DTIMVLKNGQVVESG 423
TSALD S ++ + ++ T ++V H + V D L NG++VE G
Sbjct: 168 PTSALDPISTAKIEELIAELKKEYTIVIVTHNMQQAARVADRTAFLLNGRLVEFG 222
|
Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). Length = 227 |
| >gnl|CDD|213213 cd03246, ABCC_Protease_Secretion, ATP-binding cassette domain of PrtD, subfamily C | Back alignment and domain information |
|---|
Score = 160 bits (407), Expect = 3e-45
Identities = 75/215 (34%), Positives = 111/215 (51%), Gaps = 43/215 (20%)
Query: 206 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKIL 265
+E V F YP V N++FS++ G++ A +GPSGSGKST+ ++ L PTSG++
Sbjct: 1 LEVENVSFRYPGAEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVR 60
Query: 266 LDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNILLGKEDASMDRVIEAAKAANAHSF 325
LDG D+ L + +G + Q+ LF+ SIA NIL
Sbjct: 61 LDGADISQWDPNELGDHVGYLPQDDELFSGSIAENIL----------------------- 97
Query: 326 VEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRA 385
SGGQ+QR+ +ARA+ NP+IL+LDE S LD E E + +A
Sbjct: 98 -------------------SGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQA 138
Query: 386 LEKI-MSNRTTIVVAHRLSTVRDVDTIMVLKNGQV 419
+ + + T IV+AHR T+ D I+VL++G+V
Sbjct: 139 IAALKAAGATRIVIAHRPETLASADRILVLEDGRV 173
|
This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA. Length = 173 |
| >gnl|CDD|224054 COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 164 bits (418), Expect = 3e-45
Identities = 76/242 (31%), Positives = 122/242 (50%), Gaps = 12/242 (4%)
Query: 835 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTV 894
IE+RN++ KY D T + ++ +V G ++G +G+GK+T++ ++ P SG +
Sbjct: 5 IEVRNLTKKY--GGDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEI 62
Query: 895 LIDGYDIRTLNLRSLRRKIGLVQQEPALFST-TIYENIKYGNEDASEIELMKATKAANAH 953
L+ GYD+ +RR+IG V QEP+L+ T+ EN+++ A L K
Sbjct: 63 LVLGYDVVK-EPAKVRRRIGYVPQEPSLYPELTVRENLEFF---ARLYGLSKEEAEERIE 118
Query: 954 GFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQ 1013
+ G + + LSGG KQR++IA A+L +P +L+LDE TS LD S I
Sbjct: 119 ELLELF--GLEDKANKKVRTLSGGMKQRLSIALALLHDPELLILDEPTSGLDPESRREIW 176
Query: 1014 EALDKL--MEGRTTIMVAHRLSTI-RNADKIAVLQQGKVAEIGSHEQLLRKENGIYKQLI 1070
E L +L G T ++ H L D++ +L GK+ G+ E+L K G +
Sbjct: 177 ELLRELAKEGGVTILLSTHILEEAEELCDRVIILNDGKIIAEGTPEELKEKFGGKGVIEL 236
Query: 1071 RL 1072
Sbjct: 237 EP 238
|
Length = 293 |
| >gnl|CDD|224052 COG1127, Ttg2A, ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 163 bits (415), Expect = 4e-45
Identities = 93/258 (36%), Positives = 138/258 (53%), Gaps = 41/258 (15%)
Query: 835 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTV 894
IE+R V+ + R I + ++L V G LA++G SGSGKST++ L++ P G +
Sbjct: 9 IEVRGVTKSFGDR---VILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEI 65
Query: 895 LIDGYDIRTLN---LRSLRRKIGLVQQEPALFST-TIYENI-----KYGNEDASEIE--- 942
LIDG DI L+ L +R+++G++ Q+ ALFS+ T++EN+ ++ S I
Sbjct: 66 LIDGEDIPQLSEEELYEIRKRMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELV 125
Query: 943 LMK----ATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLD 998
LMK + A A P +LSGG ++RVA+ARAI +P +L LD
Sbjct: 126 LMKLELVGLRGAAAD----LYPS-----------ELSGGMRKRVALARAIALDPELLFLD 170
Query: 999 EATSALD----TASENLIQEALDKLMEGRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIG 1053
E TS LD + LI+E D L G T IMV H L ++ AD++AVL GKV G
Sbjct: 171 EPTSGLDPISAGVIDELIRELNDAL--GLTVIMVTHDLDSLLTIADRVAVLADGKVIAEG 228
Query: 1054 SHEQLLRKENGIYKQLIR 1071
+ E+LL ++ +Q
Sbjct: 229 TPEELLASDDPWVRQFFN 246
|
Length = 263 |
| >gnl|CDD|213224 cd03257, ABC_NikE_OppD_transporters, ATP-binding cassette domain of nickel/oligopeptides specific transporters | Back alignment and domain information |
|---|
Score = 160 bits (407), Expect = 2e-44
Identities = 78/240 (32%), Positives = 124/240 (51%), Gaps = 34/240 (14%)
Query: 835 IELRNVSFKYPVRPD-ITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGT 893
+E++N+S +P + ++++ + G +L +VG+SGSGKST+ ++ P SG+
Sbjct: 2 LEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGS 61
Query: 894 VLIDGYDIRTLN---LRSLRRKIGLVQQEPALFST-----TIYENIK---------YGNE 936
++ DG D+ L+ + R++I +V Q+P S+ TI E I E
Sbjct: 62 IIFDGKDLLKLSRRLRKIRRKEIQMVFQDP--MSSLNPRMTIGEQIAEPLRIHGKLSKKE 119
Query: 937 DASEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILL 996
E L+ ++R P H +LSGGQ+QRVAIARA+ NP +L+
Sbjct: 120 ARKEAVLLLLVGVGLPEEVLNRYP-----H------ELSGGQRQRVAIARALALNPKLLI 168
Query: 997 LDEATSALDTASENLIQEALDKLME--GRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIG 1053
DE TSALD + + I + L KL E G T + + H L + AD++AV+ GK+ E G
Sbjct: 169 ADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLGVVAKIADRVAVMYAGKIVEEG 228
|
The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. Length = 228 |
| >gnl|CDD|213225 cd03258, ABC_MetN_methionine_transporter, ATP-binding cassette domain of methionine transporter | Back alignment and domain information |
|---|
Score = 160 bits (406), Expect = 3e-44
Identities = 84/244 (34%), Positives = 130/244 (53%), Gaps = 31/244 (12%)
Query: 835 IELRNVSFKYPVRP-DITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGT 893
IEL+NVS + +T ++++L V G ++G+SG+GKST+I + P SG+
Sbjct: 2 IELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGS 61
Query: 894 VLIDGYDIRTLN---LRSLRRKIGLVQQEPALFST-TIYENIKY----GNEDASEIELMK 945
VL+DG D+ L+ LR RR+IG++ Q L S+ T++EN+ +EIE
Sbjct: 62 VLVDGTDLTLLSGKELRKARRRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIE--- 118
Query: 946 ATKAANAHGFISRMPE-----GYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEA 1000
R+ E G + QLSGGQKQRV IARA+ NP +LL DEA
Sbjct: 119 -----------ERVLELLELVGLEDKADAYPAQLSGGQKQRVGIARALANNPKVLLCDEA 167
Query: 1001 TSALDTASENLIQEALDKLME--GRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGSHEQ 1057
TSALD + I L + G T +++ H + ++ D++AV+++G+V E G+ E+
Sbjct: 168 TSALDPETTQSILALLRDINRELGLTIVLITHEMEVVKRICDRVAVMEKGEVVEEGTVEE 227
Query: 1058 LLRK 1061
+
Sbjct: 228 VFAN 231
|
MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 233 |
| >gnl|CDD|213214 cd03247, ABCC_cytochrome_bd, ATP-binding cassette domain of CydCD, subfamily C | Back alignment and domain information |
|---|
Score = 157 bits (400), Expect = 3e-44
Identities = 62/218 (28%), Positives = 112/218 (51%), Gaps = 40/218 (18%)
Query: 206 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKIL 265
+ + V F+YP + V +NL+ + G+ A +G SGSGKST++ ++ +P G+I
Sbjct: 1 LSINNVSFSYPEQEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEIT 60
Query: 266 LDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNILLGKEDASMDRVIEAAKAANAHSF 325
LDG + L+ K L + +++Q P LF T++ NN+
Sbjct: 61 LDGVPVSDLE-KALSSLISVLNQRPYLFDTTLRNNL------------------------ 95
Query: 326 VEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRA 385
G + SGG++QR+A+AR +L++ I+LLDE T LD +E +
Sbjct: 96 ---------------GRRFSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSL 140
Query: 386 LEKIMSNRTTIVVAHRLSTVRDVDTIMVLKNGQVVESG 423
+ +++ ++T I + H L+ + +D I+ L+NG+++ G
Sbjct: 141 IFEVLKDKTLIWITHHLTGIEHMDKILFLENGKIIMQG 178
|
The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. Length = 178 |
| >gnl|CDD|224047 COG1122, CbiO, ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 159 bits (405), Expect = 4e-44
Identities = 87/245 (35%), Positives = 125/245 (51%), Gaps = 31/245 (12%)
Query: 835 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTV 894
IE N+SF+YP ++++L++ G + ++G +GSGKST++ L+ P SG V
Sbjct: 4 IEAENLSFRYP--GRKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEV 61
Query: 895 LIDGYDIRT-LNLRSLRRKIGLVQQEPA--LFSTTIYENIKYG--NEDASEIELMKATKA 949
L+DG D + +L LR+K+GLV Q P LF T+ + + +G N E+ +
Sbjct: 62 LVDGLDTSSEKSLLELRQKVGLVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEERVAE 121
Query: 950 A----NAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALD 1005
A + R P LSGGQKQRVAIA + P ILLLDE T+ LD
Sbjct: 122 ALELVGLEELLDRPPF-----------NLSGGQKQRVAIAGVLAMGPEILLLDEPTAGLD 170
Query: 1006 TASENLIQEALDKLME--GRTTIMVAHRLSTIRN-ADKIAVLQQGKV------AEIGSHE 1056
+ E L KL E G+T I+V H L + AD++ VL GK+ AEI +
Sbjct: 171 PKGRRELLELLKKLKEEGGKTIIIVTHDLELVLEYADRVVVLDDGKILADGDPAEIFNDA 230
Query: 1057 QLLRK 1061
+LL
Sbjct: 231 ELLLA 235
|
Length = 235 |
| >gnl|CDD|224045 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 160 bits (406), Expect = 5e-44
Identities = 84/244 (34%), Positives = 126/244 (51%), Gaps = 30/244 (12%)
Query: 835 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTV 894
+E+ N+SF Y +P I ++L+ + G ++G +GSGKST++ + P SG V
Sbjct: 3 LEVENLSFGYGGKP---ILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEV 59
Query: 895 LIDGYDIRTLNLRSLRRKIGLVQQEP-ALFSTTIYENIKYG----------NEDASEIEL 943
L+DG DI +L+ + L +K+ V Q P A F T+YE + G E +
Sbjct: 60 LLDGKDIASLSPKELAKKLAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIV 119
Query: 944 MKATKAANAHGFISRMPEGYQSHVGDRGV-QLSGGQKQRVAIARAILKNPSILLLDEATS 1002
+A + DR V +LSGG++QRV IARA+ + ILLLDE TS
Sbjct: 120 EEALELLGLEHLA------------DRPVDELSGGERQRVLIARALAQETPILLLDEPTS 167
Query: 1003 ALDTASENLIQEALDKLME--GRTTIMVAHRLS-TIRNADKIAVLQQGKVAEIGSHEQLL 1059
LD A + + E L L G T +MV H L+ R AD + +L+ GK+ G+ E++L
Sbjct: 168 HLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNLAARYADHLILLKDGKIVAQGTPEEVL 227
Query: 1060 RKEN 1063
+EN
Sbjct: 228 TEEN 231
|
Length = 258 |
| >gnl|CDD|213214 cd03247, ABCC_cytochrome_bd, ATP-binding cassette domain of CydCD, subfamily C | Back alignment and domain information |
|---|
Score = 156 bits (397), Expect = 7e-44
Identities = 65/219 (29%), Positives = 111/219 (50%), Gaps = 41/219 (18%)
Query: 835 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTV 894
+ + NVSF YP + + +NL+L++ G +A++G+SGSGKST++ L+ P G +
Sbjct: 1 LSINNVSFSYP-EQEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEI 59
Query: 895 LIDGYDIRTLNLRSLRRKIGLVQQEPALFSTTIYENIKYGNEDASEIELMKATKAANAHG 954
+DG + L ++L I ++ Q P LF TT+ N+
Sbjct: 60 TLDGVPVSDLE-KALSSLISVLNQRPYLFDTTLRNNL----------------------- 95
Query: 955 FISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQE 1014
G + SGG++QR+A+AR +L++ I+LLDE T LD +E +
Sbjct: 96 ----------------GRRFSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLS 139
Query: 1015 ALDKLMEGRTTIMVAHRLSTIRNADKIAVLQQGKVAEIG 1053
+ ++++ +T I + H L+ I + DKI L+ GK+ G
Sbjct: 140 LIFEVLKDKTLIWITHHLTGIEHMDKILFLENGKIIMQG 178
|
The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. Length = 178 |
| >gnl|CDD|213217 cd03250, ABCC_MRP_domain1, ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C | Back alignment and domain information |
|---|
Score = 157 bits (399), Expect = 1e-43
Identities = 78/223 (34%), Positives = 116/223 (52%), Gaps = 29/223 (13%)
Query: 206 IEFSEVCFAYPSR---PHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSG 262
I + F + S +++N V G+ A VGP GSGKS+++S + E SG
Sbjct: 1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSG 60
Query: 263 KILLDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNILLGKE-DASM-DRVIEAAKAA 320
+ + G + VSQEP + +I NIL GK D ++VI+A
Sbjct: 61 SVSVPGS-------------IAYVSQEPWIQNGTIRENILFGKPFDEERYEKVIKAC--- 104
Query: 321 NAHSF---VEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAE 377
+ +E LPDG T++GE G LSGGQKQRI++ARAV + I LLD+ SA+DA
Sbjct: 105 ---ALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDADIYLLDDPLSAVDAH 161
Query: 378 -SELIVQRAL-EKIMSNRTTIVVAHRLSTVRDVDTIMVLKNGQ 418
I + + +++N+T I+V H+L + D I+VL NG+
Sbjct: 162 VGRHIFENCILGLLLNNKTRILVTHQLQLLPHADQIVVLDNGR 204
|
This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 204 |
| >gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Score = 172 bits (437), Expect = 2e-43
Identities = 119/380 (31%), Positives = 187/380 (49%), Gaps = 67/380 (17%)
Query: 128 WYAGILVRHGDTNGGKAFTTIINVIFSGFALGQAAPNLAAIAKGKAAAANIISIIKENSH 187
W+ L+R G ++ +F+G G+ K + +I S+
Sbjct: 1086 WFGSFLIRRGTILVDDFMKSLFTFLFTGSYAGKLMSLKGDSENAKLSFEKYYPLIIRKSN 1145
Query: 188 SSERPGDDGITLPK---LAGQIEFSEVCFAYPSRPHM-VFENLNFSVDAGKTFAFVGPSG 243
R + GI + + G+IE +V F Y SRP++ ++++L FS D+ KT A VG +G
Sbjct: 1146 IDVR-DNGGIRIKNKNDIKGKIEIMDVNFRYISRPNVPIYKDLTFSCDSKKTTAIVGETG 1204
Query: 244 SGKSTIISMVQRLYEPTSGKILL---------------DGHDLKSLQLKWLRE----QMG 284
SGKST++S++ R Y+ + ++ G + +++ +K + E + G
Sbjct: 1205 SGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQDYQGDEEQNVGMKNVNEFSLTKEG 1264
Query: 285 LVSQEPALFAT-----------------------------------SIANNILLGKEDAS 309
++ +F SI NI GKEDA+
Sbjct: 1265 GSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLFNMSIYENIKFGKEDAT 1324
Query: 310 MDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDE 369
+ V A K A F+E LP+ Y T VG G LSGGQKQRIAIARA+LR PKILLLDE
Sbjct: 1325 REDVKRACKFAAIDEFIESLPNKYDTNVGPYGKSLSGGQKQRIAIARALLREPKILLLDE 1384
Query: 370 ATSALDAESELIVQRALEKI--MSNRTTIVVAHRLSTVRDVDTIMVLKN----GQVVES- 422
ATS+LD+ SE ++++ + I +++T I +AHR+++++ D I+V N G V++
Sbjct: 1385 ATSSLDSNSEKLIEKTIVDIKDKADKTIITIAHRIASIKRSDKIVVFNNPDRTGSFVQAH 1444
Query: 423 GTHVDLIS-KGGEYAALVNL 441
GTH +L+S + G Y V L
Sbjct: 1445 GTHEELLSVQDGVYKKYVKL 1464
|
Length = 1466 |
| >gnl|CDD|224058 COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 161 bits (409), Expect = 2e-43
Identities = 85/242 (35%), Positives = 130/242 (53%), Gaps = 23/242 (9%)
Query: 205 QIEFSEVCFAYPSRPHMVF---ENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTS 261
IE V + ++++ + G+ F +G SG+GKST++ ++ L PTS
Sbjct: 1 MIELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTS 60
Query: 262 GKILLDGHDLKSL---QLKWLREQMGLVSQEPALFAT-SIANNILLGKEDASMDRVIEAA 317
G + +DG DL +L +L+ LR+++G++ Q L ++ ++ N+ E A + +
Sbjct: 61 GSVFVDGQDLTALSEAELRQLRQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQ 120
Query: 318 KAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAE 377
+ A V GL D QLSGGQKQR+AIARA+ NPKILL DEATSALD E
Sbjct: 121 RVAELLELV-GLSDKADRYPA----QLSGGQKQRVAIARALANNPKILLCDEATSALDPE 175
Query: 378 S-ELIVQRALEKIMSNR---TTIV-VAHRLSTVRDV-DTIMVLKNGQVVESGT--HVDLI 429
+ + I++ L+ I NR TIV + H + V+ + D + VL G++VE GT V
Sbjct: 176 TTQSILEL-LKDI--NRELGLTIVLITHEMEVVKRICDRVAVLDQGRLVEEGTVSEVFAN 232
Query: 430 SK 431
K
Sbjct: 233 PK 234
|
Length = 339 |
| >gnl|CDD|213192 cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 156 bits (397), Expect = 2e-43
Identities = 73/216 (33%), Positives = 119/216 (55%), Gaps = 9/216 (4%)
Query: 207 EFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILL 266
E + F+YP ++++ ++ G+ VGP+GSGKST++ ++ L PTSG++L+
Sbjct: 1 ELKNLSFSYPDGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLV 60
Query: 267 DGHDLKSLQLKWLREQMGLVSQEPA--LFATSIANNILLGKEDASMDRVIEAAKAANAHS 324
DG DL L LK LR ++GLV Q P F ++ + G E+ + + A
Sbjct: 61 DGKDLTKLSLKELRRKVGLVFQNPDDQFFGPTVEEEVAFGLENLGLPEEEIEERVEEALE 120
Query: 325 FVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQR 384
V GL +G + + LSGGQKQR+AIA + +P ILLLDE T+ LD +
Sbjct: 121 LV-GL-EGLRDRSPF---TLSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRRELLE 175
Query: 385 ALEKIMSNRTTIVVA-HRLSTVRDV-DTIMVLKNGQ 418
L+K+ + TI++ H L + ++ D ++VL++G+
Sbjct: 176 LLKKLKAEGKTIIIVTHDLDLLLELADRVIVLEDGK 211
|
Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 211 |
| >gnl|CDD|224050 COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 159 bits (405), Expect = 3e-43
Identities = 81/240 (33%), Positives = 128/240 (53%), Gaps = 28/240 (11%)
Query: 835 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTV 894
IE NVS +Y + +++NL + G L ++G SGSGK+T + ++ R +P SG +
Sbjct: 2 IEFENVSKRYGNK---KAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEI 58
Query: 895 LIDGYDIRTLNLRSLRRKIGLVQQEPALFS-TTIYENI-------KYGNEDASEI--ELM 944
LIDG DI L+ LRRKIG V Q+ LF T+ ENI + E + EL+
Sbjct: 59 LIDGEDISDLDPVELRRKIGYVIQQIGLFPHLTVAENIATVPKLLGWDKERIKKRADELL 118
Query: 945 KATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSAL 1004
+ + R P +LSGGQ+QRV +ARA+ +P ILL+DE AL
Sbjct: 119 DLVG-LDPSEYADRYPH-----------ELSGGQQQRVGVARALAADPPILLMDEPFGAL 166
Query: 1005 DTASENLIQEALDKLME--GRTTIMVAHRLS-TIRNADKIAVLQQGKVAEIGSHEQLLRK 1061
D + +QE + +L + G+T + V H + ++ AD+IAV+ G++ + + +++L
Sbjct: 167 DPITRKQLQEEIKELQKELGKTIVFVTHDIDEALKLADRIAVMDAGEIVQYDTPDEILAN 226
|
Length = 309 |
| >gnl|CDD|213261 cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system | Back alignment and domain information |
|---|
Score = 156 bits (396), Expect = 1e-42
Identities = 79/218 (36%), Positives = 122/218 (55%), Gaps = 19/218 (8%)
Query: 855 NLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLN---LRSLRR 911
+++L V G ++G SGSGKST++ + R +P SG VLIDG DI ++ LR LRR
Sbjct: 42 DVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRR 101
Query: 912 K-IGLVQQEPALF-STTIYENIKYGNEDA---SEIELMKATKAANAHGFISRMPEGYQSH 966
K I +V Q AL T+ EN+ +G E +A +A G EG++
Sbjct: 102 KKISMVFQSFALLPHRTVLENVAFGLEVQGVPRAEREERAAEALELVGL-----EGWEHK 156
Query: 967 VGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKL--MEGRT 1024
D +LSGG +QRV +ARA+ +P ILL+DEA SALD +Q+ L +L +T
Sbjct: 157 YPD---ELSGGMQQRVGLARALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAELQKT 213
Query: 1025 TIMVAHRLS-TIRNADKIAVLQQGKVAEIGSHEQLLRK 1061
+ + H L +R D+IA+++ G++ ++G+ E++L
Sbjct: 214 IVFITHDLDEALRLGDRIAIMKDGRLVQVGTPEEILTN 251
|
This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 269 |
| >gnl|CDD|237648 PRK14250, PRK14250, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 153 bits (389), Expect = 5e-42
Identities = 89/241 (36%), Positives = 134/241 (55%), Gaps = 17/241 (7%)
Query: 835 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTV 894
IE + VS+ I +++++K G +VG SG+GKST+I L+ R DP G++
Sbjct: 4 IEFKEVSYS---SFGKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSI 60
Query: 895 LIDGYDIRTLNLRSLRRKIGLVQQEPALFSTTIYENIKYGNEDASEIELMKATKAANAHG 954
LIDG DI+T+++ LRRKIG+V Q+P LF T+ +NI+YG ++K K +
Sbjct: 61 LIDGVDIKTIDVIDLRRKIGMVFQQPHLFEGTVKDNIEYG-------PMLKGEKNVDVEY 113
Query: 955 FISRMPEGYQSHVGDRGVQ-LSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQ 1013
++S + G R V+ LSGG+ QRV+IAR + NP +LLLDE TSALD S +I+
Sbjct: 114 YLSIV--GLNKEYATRDVKNLSGGEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEIIE 171
Query: 1014 EALDKLME--GRTTIMVAHRLSTI-RNADKIAVLQQGKVAEIG-SHEQLLRKENGIYKQL 1069
E + KL T I + H + R D A L +G + E +++ +N + K
Sbjct: 172 ELIVKLKNKMNLTVIWITHNMEQAKRIGDYTAFLNKGILVEYAKTYDFFTNPQNEVTKLF 231
Query: 1070 I 1070
I
Sbjct: 232 I 232
|
Length = 241 |
| >gnl|CDD|215595 PLN03130, PLN03130, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 167 bits (425), Expect = 6e-42
Identities = 80/240 (33%), Positives = 145/240 (60%), Gaps = 4/240 (1%)
Query: 833 GNIELRNVSFKYPVRPDIT-IFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPIS 891
G+I+ +V +Y RP++ + L+ ++S + +VG++G+GKS++++ + R +
Sbjct: 1236 GSIKFEDVVLRY--RPELPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELER 1293
Query: 892 GTVLIDGYDIRTLNLRSLRRKIGLVQQEPALFSTTIYENIKYGNEDASEIELMKATKAAN 951
G +LIDG DI L LR+ +G++ Q P LFS T+ N+ NE ++ +L ++ + A+
Sbjct: 1294 GRILIDGCDISKFGLMDLRKVLGIIPQAPVLFSGTVRFNLDPFNEH-NDADLWESLERAH 1352
Query: 952 AHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENL 1011
I R G + V + G S GQ+Q +++ARA+L+ IL+LDEAT+A+D ++ L
Sbjct: 1353 LKDVIRRNSLGLDAEVSEAGENFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRTDAL 1412
Query: 1012 IQEALDKLMEGRTTIMVAHRLSTIRNADKIAVLQQGKVAEIGSHEQLLRKENGIYKQLIR 1071
IQ+ + + + T +++AHRL+TI + D+I VL G+V E + E LL E + ++++
Sbjct: 1413 IQKTIREEFKSCTMLIIAHRLNTIIDCDRILVLDAGRVVEFDTPENLLSNEGSAFSKMVQ 1472
|
Length = 1622 |
| >gnl|CDD|213262 cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cassette domain of the osmoprotectant transporter | Back alignment and domain information |
|---|
Score = 153 bits (388), Expect = 8e-42
Identities = 85/239 (35%), Positives = 130/239 (54%), Gaps = 27/239 (11%)
Query: 835 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTV 894
IE NV+ +Y NLNL+++ G L ++G SGSGK+T + ++ R +P SG +
Sbjct: 1 IEFENVTKRYGGGK--KAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEI 58
Query: 895 LIDGYDIRTLNLRSLRRKIGLVQQEPALFS-TTIYENI-------KYGNE--DASEIELM 944
IDG DIR + LRRKIG V Q+ LF T+ ENI K+ E EL+
Sbjct: 59 FIDGEDIREQDPVELRRKIGYVIQQIGLFPHMTVEENIALVPKLLKWPKEKIRERADELL 118
Query: 945 KATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSAL 1004
A F R P +LSGGQ+QRV +ARA+ +P +LL+DE AL
Sbjct: 119 ALVGLDPAE-FADRYPH-----------ELSGGQQQRVGVARALAADPPLLLMDEPFGAL 166
Query: 1005 DTASENLIQEALDKLME--GRTTIMVAHRL-STIRNADKIAVLQQGKVAEIGSHEQLLR 1060
D + + +QE +L + G+T + V H + R AD+IA+++ G++ ++G+ +++LR
Sbjct: 167 DPITRDQLQEEFKRLQQELGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQVGTPDEILR 225
|
OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 242 |
| >gnl|CDD|224059 COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 152 bits (386), Expect = 1e-41
Identities = 86/230 (37%), Positives = 126/230 (54%), Gaps = 20/230 (8%)
Query: 835 IELRNVSFKYPVRP-DITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGT 893
IEL+NVS Y + + +++NL++ AG +A+VG SGSGKST+++L+ P SG
Sbjct: 2 IELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGE 61
Query: 894 VLIDGYDIRTLN---LRSLRRK-IGLVQQEPALFST-TIYENI----KYGNEDASEIELM 944
VLI+G D+ L+ L LRRK IG V Q L T+ EN+ + A +
Sbjct: 62 VLINGKDLTKLSEKELAKLRRKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKR- 120
Query: 945 KATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSAL 1004
A + G R+ + S +LSGGQ+QRVAIARA++ NP I+L DE T L
Sbjct: 121 AAEELLEVLGLEDRLLKKKPS-------ELSGGQQQRVAIARALINNPKIILADEPTGNL 173
Query: 1005 DTASENLIQEALDKLME--GRTTIMVAHRLSTIRNADKIAVLQQGKVAEI 1052
D+ + + E L +L + G+T IMV H + AD++ L+ GK+ E
Sbjct: 174 DSKTAKEVLELLRELNKERGKTIIMVTHDPELAKYADRVIELKDGKIEEE 223
|
Length = 226 |
| >gnl|CDD|213260 cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of the nitrate and sulfonate transporters | Back alignment and domain information |
|---|
Score = 151 bits (385), Expect = 1e-41
Identities = 74/235 (31%), Positives = 111/235 (47%), Gaps = 40/235 (17%)
Query: 206 IEFSEVCFAYPS--RPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGK 263
+E V Y E+++ SV+ G+ A VGPSG GKST++ ++ L PTSG+
Sbjct: 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGE 60
Query: 264 ILLDGHDLKSLQLKWLREQMGLVSQEPALFA-TSIANNILLGKEDASMDRVIEAAKAANA 322
+L+DG + G V Q+ AL ++ +N+ LG E + + A A
Sbjct: 61 VLVDGEPVTGP-----GPDRGYVFQQDALLPWLTVLDNVALGLELQGVPK---AEARERA 112
Query: 323 HSFVEGLPDGYQTQVGEGGT------QLSGGQKQRIAIARAVLRNPKILLLDEATSALDA 376
+E VG G QLSGG +QR+A+ARA+ +P +LLLDE SALDA
Sbjct: 113 EELLE--------LVGLSGFENAYPHQLSGGMRQRVALARALAVDPDVLLLDEPFSALDA 164
Query: 377 ESELIVQRALEKIMS-NRTTIV-VAH------RLSTVRDVDTIMVLKN--GQVVE 421
+ +Q L I T++ V H L+ D ++VL G++V
Sbjct: 165 LTREQLQEELLDIWRETGKTVLLVTHDIDEAVFLA-----DRVVVLSARPGRIVA 214
|
NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding protein-dependent transport systems | Back alignment and domain information |
|---|
Score = 148 bits (377), Expect = 3e-41
Identities = 73/219 (33%), Positives = 111/219 (50%), Gaps = 47/219 (21%)
Query: 206 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKIL 265
+E V Y V +++ +++AG+ A +GPSGSGKST++ + L EP SG IL
Sbjct: 1 LELKNVSKRYGQ--KTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSIL 58
Query: 266 LDGHDLKSL--QLKWLREQMGLVSQEPALFAT-SIANNILLGKEDASMDRVIEAAKAANA 322
+DG DL L +L LR ++G+V Q+ ALF ++ NI LG
Sbjct: 59 IDGEDLTDLEDELPPLRRRIGMVFQDFALFPHLTVLENIALG------------------ 100
Query: 323 HSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIV 382
LSGGQ+QR+A+ARA+ +P +LLLDE TSALD + V
Sbjct: 101 ---------------------LSGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREV 139
Query: 383 QRALEKI--MSNRTTIVVAHRLSTVRDV-DTIMVLKNGQ 418
+ L+ + T ++V H L + D ++VL++G+
Sbjct: 140 RALLKSLQAQLGITVVLVTHDLDEAARLADRVVVLRDGK 178
|
This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 178 |
| >gnl|CDD|224045 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 152 bits (386), Expect = 3e-41
Identities = 74/233 (31%), Positives = 120/233 (51%), Gaps = 27/233 (11%)
Query: 206 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKIL 265
+E + F Y +P + ++L+FS+ G+ +GP+GSGKST++ + L +P SG++L
Sbjct: 3 LEVENLSFGYGGKP--ILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVL 60
Query: 266 LDGHDLKSLQLKWLREQMGLVSQEP-ALFATSIANNILLGK----------EDASMDRVI 314
LDG D+ SL K L +++ V Q P A F ++ +LLG+ + V
Sbjct: 61 LDGKDIASLSPKELAKKLAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVE 120
Query: 315 EAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSAL 374
EA + + +LSGG++QR+ IARA+ + ILLLDE TS L
Sbjct: 121 EALELLGLEHLAD-----------RPVDELSGGERQRVLIARALAQETPILLLDEPTSHL 169
Query: 375 DAESELIVQRALEKIM--SNRTTIVVAHRLS-TVRDVDTIMVLKNGQVVESGT 424
D ++ V L + T ++V H L+ R D +++LK+G++V GT
Sbjct: 170 DIAHQIEVLELLRDLNREKGLTVVMVLHDLNLAARYADHLILLKDGKIVAQGT 222
|
Length = 258 |
| >gnl|CDD|213217 cd03250, ABCC_MRP_domain1, ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C | Back alignment and domain information |
|---|
Score = 149 bits (379), Expect = 5e-41
Identities = 74/222 (33%), Positives = 118/222 (53%), Gaps = 26/222 (11%)
Query: 835 IELRNVSFKYPVRPDIT--IFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISG 892
I + + SF + T +++NL+V G +A+VG GSGKS+++S ++ + +SG
Sbjct: 1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSG 60
Query: 893 TVLIDGYDIRTLNLRSLRRKIGLVQQEPALFSTTIYENIKYGNE-DASEIELMKATKAAN 951
+V + G I V QEP + + TI ENI +G D E K KA
Sbjct: 61 SVSVPG-------------SIAYVSQEPWIQNGTIRENILFGKPFDEERYE--KVIKACA 105
Query: 952 AHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALD--TAS- 1008
+ +P+G + +G++G+ LSGGQKQR+++ARA+ + I LLD+ SA+D
Sbjct: 106 LEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDADIYLLDDPLSAVDAHVGRH 165
Query: 1009 --ENLIQEALDKLMEGRTTIMVAHRLSTIRNADKIAVLQQGK 1048
EN I L+ +T I+V H+L + +AD+I VL G+
Sbjct: 166 IFENCILGL---LLNNKTRILVTHQLQLLPHADQIVVLDNGR 204
|
This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 204 |
| >gnl|CDD|213225 cd03258, ABC_MetN_methionine_transporter, ATP-binding cassette domain of methionine transporter | Back alignment and domain information |
|---|
Score = 150 bits (381), Expect = 7e-41
Identities = 83/239 (34%), Positives = 125/239 (52%), Gaps = 22/239 (9%)
Query: 206 IEFSEVC--FAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGK 263
IE V F ++++ SV G+ F +G SG+GKST+I + L PTSG
Sbjct: 2 IELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGS 61
Query: 264 ILLDGHDLKSLQLKWLRE---QMGLVSQEPALFAT-SIANNILLGKEDASMDRVIEAAKA 319
+L+DG DL L K LR+ ++G++ Q L ++ ++ N+ L E A + + +
Sbjct: 62 VLVDGTDLTLLSGKELRKARRRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIEERV 121
Query: 320 ANAHSFV--EGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAE 377
V E D Y Q LSGGQKQR+ IARA+ NPK+LL DEATSALD E
Sbjct: 122 LELLELVGLEDKADAYPAQ-------LSGGQKQRVGIARALANNPKVLLCDEATSALDPE 174
Query: 378 SELIVQRALEKIMSNR----TTIVVAHRLSTVRDV-DTIMVLKNGQVVESGTHVDLISK 431
+ + L I NR T +++ H + V+ + D + V++ G+VVE GT ++ +
Sbjct: 175 TTQSILALLRDI--NRELGLTIVLITHEMEVVKRICDRVAVMEKGEVVEEGTVEEVFAN 231
|
MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 233 |
| >gnl|CDD|213260 cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of the nitrate and sulfonate transporters | Back alignment and domain information |
|---|
Score = 149 bits (379), Expect = 7e-41
Identities = 73/226 (32%), Positives = 114/226 (50%), Gaps = 19/226 (8%)
Query: 835 IELRNVSFKYP-VRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGT 893
+E+RNVS Y +T E+++L V G +A+VG SG GKST++ ++ P SG
Sbjct: 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGE 60
Query: 894 VLIDGYDIRTLNLRSLRRKIGLVQQEPALFS-TTIYENIKYGNEDASEIELMKATKA-AN 951
VL+DG + G V Q+ AL T+ +N+ G E++ + +A
Sbjct: 61 VLVDGEPVTGPG-----PDRGYVFQQDALLPWLTVLDNVALG----LELQGVPKAEARER 111
Query: 952 AHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENL 1011
A + + G QLSGG +QRVA+ARA+ +P +LLLDE SALD +
Sbjct: 112 AEELLELV--GLSGFENAYPHQLSGGMRQRVALARALAVDPDVLLLDEPFSALDALTREQ 169
Query: 1012 IQEALDKLME--GRTTIMVAHRLS-TIRNADKIAVLQQ--GKVAEI 1052
+QE L + G+T ++V H + + AD++ VL G++
Sbjct: 170 LQEELLDIWRETGKTVLLVTHDIDEAVFLADRVVVLSARPGRIVAE 215
|
NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|226361 COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 154 bits (391), Expect = 7e-41
Identities = 79/233 (33%), Positives = 130/233 (55%), Gaps = 17/233 (7%)
Query: 832 KGNIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPIS 891
K +E+RNVS + D T ++++L + G + ++G SG GK+T++ ++ F P S
Sbjct: 3 KPALEIRNVSKSFG---DFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSS 59
Query: 892 GTVLIDGYDIRTLNLRSLRRKIGLVQQEPALFST-TIYENIKYGNEDASEIELMKATKAA 950
G +L+DG DI ++ +R IG+V Q ALF T+ EN+ +G +++ K K A
Sbjct: 60 GEILLDGEDIT--DVPPEKRPIGMVFQSYALFPHMTVEENVAFG------LKVRKKLKKA 111
Query: 951 NAHGFISRMPEGYQ-SHVGDRGV-QLSGGQKQRVAIARAILKNPSILLLDEATSALDTAS 1008
+ E DR QLSGGQ+QRVA+ARA++ P +LLLDE SALD
Sbjct: 112 EIKARVEEALELVGLEGFADRKPHQLSGGQQQRVALARALVPEPKVLLLDEPLSALDAKL 171
Query: 1009 ENLIQEALDKLME--GRTTIMVAH-RLSTIRNADKIAVLQQGKVAEIGSHEQL 1058
+++ L +L G T + V H + + +D+IAV+ G++ ++G+ E++
Sbjct: 172 REQMRKELKELQRELGITFVYVTHDQEEALAMSDRIAVMNDGRIEQVGTPEEI 224
|
Length = 352 |
| >gnl|CDD|224051 COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 150 bits (381), Expect = 7e-41
Identities = 84/244 (34%), Positives = 129/244 (52%), Gaps = 33/244 (13%)
Query: 835 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTV 894
IE++N+S + D + + ++L V G + ++G SGSGKST++ + +P SG++
Sbjct: 3 IEIKNLSKSFG---DKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSI 59
Query: 895 LIDGYDI-RTLNLRSLRRKIGLVQQEPALFS-TTIYENIKYGNEDASEIELMKATKA-AN 951
+DG D+ ++ LRRK+G+V Q+ LF T+ EN+ +++ K +KA A
Sbjct: 60 TVDGEDVGDKKDILKLRRKVGMVFQQFNLFPHLTVLENVTLA-----PVKVKKLSKAEAR 114
Query: 952 AHGFISRMPEGYQSHVG--DRG----VQLSGGQKQRVAIARAILKNPSILLLDEATSALD 1005
VG D+ QLSGGQ+QRVAIARA+ +P ++L DE TSALD
Sbjct: 115 EKA------LELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMDPKVMLFDEPTSALD 168
Query: 1006 TASENLIQEALDKLM-----EGRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGSHEQLL 1059
L+ E LD +M EG T I+V H + R AD++ + QGK+ E G E+
Sbjct: 169 P---ELVGEVLD-VMKDLAEEGMTMIIVTHEMGFAREVADRVIFMDQGKIIEEGPPEEFF 224
Query: 1060 RKEN 1063
Sbjct: 225 DNPK 228
|
Length = 240 |
| >gnl|CDD|224051 COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 150 bits (381), Expect = 9e-41
Identities = 76/241 (31%), Positives = 122/241 (50%), Gaps = 46/241 (19%)
Query: 206 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKIL 265
IE + ++ V + ++ SV+ G+ +GPSGSGKST++ + L EP SG I
Sbjct: 3 IEIKNLSKSFGD--KEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSIT 60
Query: 266 LDGHD-LKSLQLKWLREQMGLVSQEPALFA-TSIANNILLG--------KEDAS------ 309
+DG D + LR ++G+V Q+ LF ++ N+ L K +A
Sbjct: 61 VDGEDVGDKKDILKLRRKVGMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKALEL 120
Query: 310 MDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDE 369
+++V A K A ++ P QLSGGQ+QR+AIARA+ +PK++L DE
Sbjct: 121 LEKVGLADK---ADAY----PA-----------QLSGGQQQRVAIARALAMDPKVMLFDE 162
Query: 370 ATSALDAES-----ELIVQRALEKIMSNRTTIVVAHRLSTVRDV-DTIMVLKNGQVVESG 423
TSALD E +++ A E + T I+V H + R+V D ++ + G+++E G
Sbjct: 163 PTSALDPELVGEVLDVMKDLAEEGM----TMIIVTHEMGFAREVADRVIFMDQGKIIEEG 218
Query: 424 T 424
Sbjct: 219 P 219
|
Length = 240 |
| >gnl|CDD|213228 cd03261, ABC_Org_Solvent_Resistant, ATP-binding cassette transport system involved in resistant to organic solvents | Back alignment and domain information |
|---|
Score = 149 bits (378), Expect = 2e-40
Identities = 74/238 (31%), Positives = 123/238 (51%), Gaps = 37/238 (15%)
Query: 206 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKIL 265
IE + ++ R V + ++ V G+ A +GPSGSGKST++ ++ L P SG++L
Sbjct: 1 IELRGLTKSFGGRT--VLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVL 58
Query: 266 LDGHDLKSL---QLKWLREQMGLVSQEPALF-ATSIANNILL-----GKEDASM--DRVI 314
+DG D+ L +L LR +MG++ Q ALF + ++ N+ + + V+
Sbjct: 59 IDGEDISGLSEAELYRLRRRMGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIVL 118
Query: 315 EAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSAL 374
E +A + P +LSGG K+R+A+ARA+ +P++LL DE T+ L
Sbjct: 119 EKLEAVGLRGAEDLYPA-----------ELSGGMKKRVALARALALDPELLLYDEPTAGL 167
Query: 375 DAES-----ELI--VQRALEKIMSNRTTIVVAHRLSTVRDV-DTIMVLKNGQVVESGT 424
D + +LI +++ L T+I+V H L T + D I VL +G++V GT
Sbjct: 168 DPIASGVIDDLIRSLKKEL-----GLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGT 220
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|226359 COG3839, MalK, ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 152 bits (387), Expect = 2e-40
Identities = 79/244 (32%), Positives = 130/244 (53%), Gaps = 30/244 (12%)
Query: 835 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTV 894
+EL+NV + + +++NL + G + ++G SG GKST++ ++ +P SG +
Sbjct: 4 LELKNVRKSFG---SFEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEI 60
Query: 895 LIDGYDIRTLNLRSLRRKIGLVQQEPALFST-TIYENI----KYGNEDASEIE--LMKAT 947
LIDG D+ +L +R I +V Q AL+ T+YENI K +EI+ + +
Sbjct: 61 LIDGRDVT--DLPPEKRGIAMVFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVA 118
Query: 948 KAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTA 1007
K ++R P +QLSGGQ+QRVA+ARA+++ P + LLDE S LD
Sbjct: 119 KLLGLEHLLNRKP-----------LQLSGGQRQRVALARALVRKPKVFLLDEPLSNLDAK 167
Query: 1008 SENLIQEALDKLME--GRTTIMVAHRL---STIRNADKIAVLQQGKVAEIGSHEQLLRKE 1062
L++ + KL E G TTI V H T+ AD+I V+ G++ ++G+ +L +
Sbjct: 168 LRVLMRSEIKKLHERLGTTTIYVTHDQVEAMTL--ADRIVVMNDGRIQQVGTPLELYERP 225
Query: 1063 NGIY 1066
++
Sbjct: 226 ANLF 229
|
Length = 338 |
| >gnl|CDD|224047 COG1122, CbiO, ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 146 bits (371), Expect = 1e-39
Identities = 74/231 (32%), Positives = 122/231 (52%), Gaps = 24/231 (10%)
Query: 206 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKIL 265
IE + F YP R ++++ ++ G+ +GP+GSGKST++ ++ L +PTSG++L
Sbjct: 4 IEAENLSFRYPGRKA-ALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVL 62
Query: 266 LDGHDLKSLQLKW-LREQMGLVSQEPA--LFATSIANNILLG------KEDASMDRVIEA 316
+DG D S + LR+++GLV Q P LF ++ + + G + +RV EA
Sbjct: 63 VDGLDTSSEKSLLELRQKVGLVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEERVAEA 122
Query: 317 AKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDA 376
+ ++ P LSGGQKQR+AIA + P+ILLLDE T+ LD
Sbjct: 123 LELVGLEELLDRPPF-----------NLSGGQKQRVAIAGVLAMGPEILLLDEPTAGLDP 171
Query: 377 ESELIVQRALEKIM--SNRTTIVVAHRLSTVRDV-DTIMVLKNGQVVESGT 424
+ + L+K+ +T I+V H L V + D ++VL +G+++ G
Sbjct: 172 KGRRELLELLKKLKEEGGKTIIIVTHDLELVLEYADRVVVLDDGKILADGD 222
|
Length = 235 |
| >gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A | Back alignment and domain information |
|---|
Score = 142 bits (361), Expect = 5e-39
Identities = 64/218 (29%), Positives = 109/218 (50%), Gaps = 48/218 (22%)
Query: 835 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTV 894
IE+RN+S +Y T ++++L V G ++G +G+GK+T+I +++ P SG +
Sbjct: 1 IEVRNLSKRYG---KKTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEI 57
Query: 895 LIDGYDIRTLNLRSLRRKIGLVQQEPALFST-TIYENIKYGNEDASEIELMKATKAANAH 953
+ G DI+ ++R+IG + +EP+L+ T+ EN+K
Sbjct: 58 KVLGKDIKK-EPEEVKRRIGYLPEEPSLYENLTVRENLKL-------------------- 96
Query: 954 GFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQ 1013
SGG KQR+A+A+A+L +P +L+LDE TS LD S
Sbjct: 97 ---------------------SGGMKQRLALAQALLHDPELLILDEPTSGLDPESRREFW 135
Query: 1014 EALDKLM-EGRTTIMVAHRLSTIRN-ADKIAVLQQGKV 1049
E L +L EG+T ++ +H L D++A+L G++
Sbjct: 136 ELLRELKKEGKTILLSSHILEEAERLCDRVAILNNGRI 173
|
This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 173 |
| >gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Score = 157 bits (398), Expect = 7e-39
Identities = 93/287 (32%), Positives = 152/287 (52%), Gaps = 15/287 (5%)
Query: 26 QLTLLTLAVVPLIAVAGGAYTITMSTLSEKGEAAYGE-AGKVAEEIISQVRAVYAFVGEA 84
+LTL V PLI + G +++K Y + EE + +R V ++ GE
Sbjct: 198 RLTLCITCVFPLIYICG-VICNKKVKINKKTSLLYNNNTMSIIEEALVGIRTVVSYCGEK 256
Query: 85 KAIESYSHSLKEALKQGKKSGVAKGIGVGLTYGLLFCAWALLLWYAGILV--------RH 136
++ ++ S K K K+ + + +G+ G + ++A WY ++ +
Sbjct: 257 TILKKFNLSEKLYSKYILKANFMESLHIGMINGFILASYAFGFWYGTRIIISDLSNQQPN 316
Query: 137 GDTNGGKAFTTIINVIFSGFALGQAAPNLAAIAKGKAAAANIISIIKENSHSSERPGDDG 196
D +GG + ++ V+ S F L PN+ K A ++ II N DDG
Sbjct: 317 NDFHGGSVISILLGVLISMFMLTIILPNITEYMKSLEATNSLYEII--NRKPLVENNDDG 374
Query: 197 ITLPKLAGQIEFSEVCFAYPSRPHM-VFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQR 255
L + +I+F V F Y +R + ++++LNF++ GKT+AFVG SG GKSTI+ +++R
Sbjct: 375 KKLKDIK-KIQFKNVRFHYDTRKDVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIER 433
Query: 256 LYEPTSGKILL-DGHDLKSLQLKWLREQMGLVSQEPALFATSIANNI 301
LY+PT G I++ D H+LK + LKW R ++G+VSQ+P LF+ SI NNI
Sbjct: 434 LYDPTEGDIIINDSHNLKDINLKWWRSKIGVVSQDPLLFSNSIKNNI 480
|
Length = 1466 |
| >gnl|CDD|224054 COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 146 bits (370), Expect = 7e-39
Identities = 67/223 (30%), Positives = 123/223 (55%), Gaps = 22/223 (9%)
Query: 222 VFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLRE 281
+ ++F V+ G+ F +GP+G+GK+T++ ++ L +PTSG+IL+ G+D+ + +R
Sbjct: 20 ALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVK-EPAKVRR 78
Query: 282 QMGLVSQEPALFAT-SIANNILL------GKEDASMDRVIEAAKAANAHSFVEGLPDGYQ 334
++G V QEP+L+ ++ N+ ++ + +R+ E + GL D
Sbjct: 79 RIGYVPQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELLELF-------GLEDKAN 131
Query: 335 TQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKI--MSN 392
+V LSGG KQR++IA A+L +P++L+LDE TS LD ES + L ++
Sbjct: 132 KKVR----TLSGGMKQRLSIALALLHDPELLILDEPTSGLDPESRREIWELLRELAKEGG 187
Query: 393 RTTIVVAHRLSTVRDV-DTIMVLKNGQVVESGTHVDLISKGGE 434
T ++ H L ++ D +++L +G+++ GT +L K G
Sbjct: 188 VTILLSTHILEEAEELCDRVIILNDGKIIAEGTPEELKEKFGG 230
|
Length = 293 |
| >gnl|CDD|213224 cd03257, ABC_NikE_OppD_transporters, ATP-binding cassette domain of nickel/oligopeptides specific transporters | Back alignment and domain information |
|---|
Score = 144 bits (365), Expect = 7e-39
Identities = 77/221 (34%), Positives = 115/221 (52%), Gaps = 15/221 (6%)
Query: 215 YPSRPHMVF--ENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLK 272
+P+ V ++++FS+ G+T VG SGSGKST+ + L +PTSG I+ DG DL
Sbjct: 11 FPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLL 70
Query: 273 SL---QLKWLREQMGLVSQEP--ALFAT-SIANNILLGKEDASMDRVIEAAKAANAHSFV 326
L K R+++ +V Q+P +L +I I EA K A V
Sbjct: 71 KLSRRLRKIRRKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEAVLLLLV 130
Query: 327 E-GLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRA 385
GLP+ + +LSGGQ+QR+AIARA+ NPK+L+ DE TSALD + +
Sbjct: 131 GVGLPEEVLNRYP---HELSGGQRQRVAIARALALNPKLLIADEPTSALDVSVQAQILDL 187
Query: 386 LEKI--MSNRTTIVVAHRLSTVRDV-DTIMVLKNGQVVESG 423
L+K+ T + + H L V + D + V+ G++VE G
Sbjct: 188 LKKLQEELGLTLLFITHDLGVVAKIADRVAVMYAGKIVEEG 228
|
The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. Length = 228 |
| >gnl|CDD|236863 PRK11153, metN, DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 147 bits (374), Expect = 9e-39
Identities = 86/240 (35%), Positives = 129/240 (53%), Gaps = 37/240 (15%)
Query: 835 IELRNVSFKYPV-RPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGT 893
IEL+N+S +P I N++L + AG V+G SG+GKST+I + P SG
Sbjct: 2 IELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGR 61
Query: 894 VLIDGYDIRTLN---LRSLRRKIGLVQQEPALFST-TIYENI----KYGNEDASEI---- 941
VL+DG D+ L+ LR RR+IG++ Q L S+ T+++N+ + +EI
Sbjct: 62 VLVDGQDLTALSEKELRKARRQIGMIFQHFNLLSSRTVFDNVALPLELAGTPKAEIKARV 121
Query: 942 ----ELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLL 997
EL+ + A+ Y + QLSGGQKQRVAIARA+ NP +LL
Sbjct: 122 TELLELVGLSDKADR----------YPA-------QLSGGQKQRVAIARALASNPKVLLC 164
Query: 998 DEATSALDTASENLIQEALDKLME--GRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGS 1054
DEATSALD A+ I E L + G T +++ H + ++ D++AV+ G++ E G+
Sbjct: 165 DEATSALDPATTRSILELLKDINRELGLTIVLITHEMDVVKRICDRVAVIDAGRLVEQGT 224
|
Length = 343 |
| >gnl|CDD|213255 cd03288, ABCC_SUR2, ATP-binding cassette domain 2 of the sulfonylurea receptor SUR | Back alignment and domain information |
|---|
Score = 144 bits (365), Expect = 1e-38
Identities = 83/239 (34%), Positives = 140/239 (58%), Gaps = 2/239 (0%)
Query: 202 LAGQIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTS 261
L G+I+ ++C Y + V +++ + G+ G +GSGKS++ R+ +
Sbjct: 16 LGGEIKIHDLCVRYENNLKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFD 75
Query: 262 GKILLDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNILLGKEDASMDRVIEAAKAAN 321
GKI++DG D+ L L LR ++ ++ Q+P LF+ SI N L + + DR+ EA + A
Sbjct: 76 GKIVIDGIDISKLPLHTLRSRLSIILQDPILFSGSIRFN-LDPECKCTDDRLWEALEIAQ 134
Query: 322 AHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELI 381
+ V+ LP G V EGG S GQ+Q +ARA +R IL++DEAT+++D +E I
Sbjct: 135 LKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFVRKSSILIMDEATASIDMATENI 194
Query: 382 VQRALEKIMSNRTTIVVAHRLSTVRDVDTIMVLKNGQVVESGTHVDLIS-KGGEYAALV 439
+Q+ + ++RT + +AHR+ST+ D D ++VL G +VE T +L++ + G +A+LV
Sbjct: 195 LQKVVMTAFADRTVVTIAHRVSTILDADLVLVLSRGILVECDTPENLLAQEDGVFASLV 253
|
The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 257 |
| >gnl|CDD|224042 COG1117, PstB, ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 143 bits (364), Expect = 2e-38
Identities = 78/243 (32%), Positives = 128/243 (52%), Gaps = 34/243 (13%)
Query: 835 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPIS--- 891
IE+R+++ Y D +++NL + + A++G SG GKST++ + R D I
Sbjct: 8 IEVRDLNLYYG---DKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGAR 64
Query: 892 --GTVLIDGYDIRT--LNLRSLRRKIGLVQQEPALFSTTIYENIKYG-------NEDASE 940
G VL+DG +I +++ LRR++G+V Q+P F +IY+N+ YG +++ E
Sbjct: 65 VEGEVLLDGKNIYDPKVDVVELRRRVGMVFQKPNPFPMSIYDNVAYGLRLHGIKDKELDE 124
Query: 941 IELMKATKAANAHGFISRMPEGYQSHVGDR----GVQLSGGQKQRVAIARAILKNPSILL 996
I + + K A V DR + LSGGQ+QR+ IARA+ P +LL
Sbjct: 125 I-VESSLKKAALWD-----------EVKDRLHKSALGLSGGQQQRLCIARALAVKPEVLL 172
Query: 997 LDEATSALDTASENLIQEALDKLMEGRTTIMVAHRLS-TIRNADKIAVLQQGKVAEIGSH 1055
+DE TSALD S I+E + +L + T ++V H + R +D A G++ E G
Sbjct: 173 MDEPTSALDPISTLKIEELITELKKKYTIVIVTHNMQQAARVSDYTAFFYLGELVEFGPT 232
Query: 1056 EQL 1058
+++
Sbjct: 233 DKI 235
|
Length = 253 |
| >gnl|CDD|213226 cd03259, ABC_Carb_Solutes_like, ATP-binding cassette domain of the carbohydrate and solute transporters-like | Back alignment and domain information |
|---|
Score = 141 bits (359), Expect = 3e-38
Identities = 74/233 (31%), Positives = 118/233 (50%), Gaps = 35/233 (15%)
Query: 206 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKIL 265
+E + Y S ++L+ +V+ G+ A +GPSG GK+T++ ++ L P SG+IL
Sbjct: 1 LELKGLSKTYGSVR--ALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEIL 58
Query: 266 LDGHDLKSLQLKWLREQMGLVSQEPALFAT-SIANNILLG------KEDASMDRVIEAAK 318
+DG D+ + + R +G+V Q+ ALF ++A NI G + RV E +
Sbjct: 59 IDGRDVTGVPPE--RRNIGMVFQDYALFPHLTVAENIAFGLKLRGVPKAEIRARVRELLE 116
Query: 319 AANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAES 378
+ P +LSGGQ+QR+A+ARA+ R P +LLLDE SALDA+
Sbjct: 117 LVGLEGLLNRYPH-----------ELSGGQQQRVALARALAREPSLLLLDEPLSALDAKL 165
Query: 379 ELIVQRALEKIMSNR--TTIVVAH------RLSTVRDVDTIMVLKNGQVVESG 423
++ L+++ TTI V H L+ D I V+ G++V+ G
Sbjct: 166 REELREELKELQRELGITTIYVTHDQEEALALA-----DRIAVMNEGRIVQVG 213
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 213 |
| >gnl|CDD|213262 cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cassette domain of the osmoprotectant transporter | Back alignment and domain information |
|---|
Score = 142 bits (361), Expect = 3e-38
Identities = 76/231 (32%), Positives = 116/231 (50%), Gaps = 24/231 (10%)
Query: 206 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKIL 265
IEF V Y V NLN + G+ +GPSGSGK+T + M+ RL EPTSG+I
Sbjct: 1 IEFENVTKRYGGGKKAV-NNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIF 59
Query: 266 LDGHDLKSLQLKWLREQMGLVSQEPALFA-TSIANNI-----LLG-KEDASMDRVIEAAK 318
+DG D++ LR ++G V Q+ LF ++ NI LL ++ +R E
Sbjct: 60 IDGEDIREQDPVELRRKIGYVIQQIGLFPHMTVEENIALVPKLLKWPKEKIRERADELLA 119
Query: 319 AAN--AHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDA 376
F + P +LSGGQ+QR+ +ARA+ +P +LL+DE ALD
Sbjct: 120 LVGLDPAEFADRYPH-----------ELSGGQQQRVGVARALAADPPLLLMDEPFGALDP 168
Query: 377 ESELIVQRALEKIMS--NRTTIVVAHRL-STVRDVDTIMVLKNGQVVESGT 424
+ +Q +++ +T + V H + R D I ++KNG++V+ GT
Sbjct: 169 ITRDQLQEEFKRLQQELGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQVGT 219
|
OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 242 |
| >gnl|CDD|188098 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Score = 155 bits (392), Expect = 5e-38
Identities = 82/241 (34%), Positives = 144/241 (59%), Gaps = 5/241 (2%)
Query: 832 KGNIELRNVSFKYPVRPDIT-IFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPI 890
+G +E RN +Y R D+ + ++N+ + G + +VG++G+GKS++ + R +
Sbjct: 1282 RGRVEFRNYCLRY--REDLDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESA 1339
Query: 891 SGTVLIDGYDIRTLNLRSLRRKIGLVQQEPALFSTTIYENIKYGNEDASEIELMKATKAA 950
G ++IDG +I + L LR KI ++ Q+P LFS ++ N+ ++ S+ E+ A + A
Sbjct: 1340 EGEIIIDGLNIAKIGLHDLRFKITIIPQDPVLFSGSLRMNLDPFSQ-YSDEEVWWALELA 1398
Query: 951 NAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASEN 1010
+ F+S +P+ + G LS GQ+Q V +ARA+L+ IL+LDEAT+A+D ++N
Sbjct: 1399 HLKTFVSALPDKLDHECAEGGENLSVGQRQLVCLARALLRKTKILVLDEATAAVDLETDN 1458
Query: 1011 LIQEALDKLMEGRTTIMVAHRLSTIRNADKIAVLQQGKVAEIGSHEQLLRKENGIYKQLI 1070
LIQ + E T + +AHRL+TI + ++ VL +G+VAE G+ LL ++ GI+ +
Sbjct: 1459 LIQSTIRTQFEDCTVLTIAHRLNTIMDYTRVIVLDKGEVAEFGAPSNLL-QQRGIFYSMA 1517
Query: 1071 R 1071
+
Sbjct: 1518 K 1518
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved [Transport and binding proteins, Other]. Length = 1522 |
| >gnl|CDD|213222 cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein | Back alignment and domain information |
|---|
Score = 141 bits (358), Expect = 5e-38
Identities = 79/231 (34%), Positives = 117/231 (50%), Gaps = 29/231 (12%)
Query: 835 IELRNVSFKYPVRPD-ITIFENLNLKVSAGRSLAVVGQSGSGKST---VISLVMRFYDPI 890
IEL+N+S Y + + + ++L + G +A+VG SGSGKST ++ + R P
Sbjct: 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDR---PT 57
Query: 891 SGTVLIDGYDIRTLN---LRSLRRK-IGLVQQEPALFST-TIYENIKYGNEDASEIELM- 944
SG V +DG DI L+ L + RR+ IG V Q L T EN+ E+ L+
Sbjct: 58 SGEVRVDGTDISKLSEKELAAFRRRHIGFVFQSFNLLPDLTALENV--------ELPLLL 109
Query: 945 ----KATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEA 1000
K + A + R+ G + +LSGGQ+QRVAIARA+ +P I+L DE
Sbjct: 110 AGVPKKERRERAEELLERV--GLGDRLNHYPSELSGGQQQRVAIARALANDPKIILADEP 167
Query: 1001 TSALDTASENLIQEALDKL--MEGRTTIMVAHRLSTIRNADKIAVLQQGKV 1049
T LD+ + + E L +L G T ++V H AD+I L+ GK+
Sbjct: 168 TGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPELAEYADRIIELRDGKI 218
|
This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. Length = 218 |
| >gnl|CDD|216049 pfam00664, ABC_membrane, ABC transporter transmembrane region | Back alignment and domain information |
|---|
Score = 143 bits (362), Expect = 6e-38
Identities = 81/272 (29%), Positives = 130/272 (47%), Gaps = 7/272 (2%)
Query: 519 AILAGMEAPLFALGITHILTAFYSPHDSQIKRVVDQVALIFVGLAVVTIPVYLLQHYFYT 578
ILAG A +F L + D ++L + +AV + LLQ FY
Sbjct: 8 LILAGATALVFPL-LLGRFLDSLI--DGNGDERSSLISLAILLIAVGVLQGLLLQGSFYL 64
Query: 579 LMGEHLTARVRLSMFSAILSNEIGWFD--LDENNTGLLISTLAADATLVRSALADRLSII 636
GE L R+R +F A+L +G D N+ G L S L D + +R L D+L +
Sbjct: 65 --GERLGQRIRKRLFRALLRQILGLPMSFFDTNSVGELTSRLTNDVSKIRDGLGDKLGLF 122
Query: 637 VQNVALTVTAFVIAFILSWRLAAVVAASLPLLIGAFVAEQLFLKGFGGDYNRAYSRATSV 696
Q++A V F++ F W+L V+ A LPLLI L+ +AY++A SV
Sbjct: 123 FQSLATVVGGFIVMFYYGWKLTLVLLAILPLLILLSAVLAKKLRKLNRKEQKAYAKAGSV 182
Query: 697 AREAIANIRTVAAYGIEKRISIQFASELSQPNKQALLRGHISGFGYGVSQLLSLCSYALG 756
A E+++ IRTV A+G E+ ++ L K + + +G +G++QL+S SYAL
Sbjct: 183 AEESLSGIRTVKAFGREEYELERYDKALEDAEKAGIKKAITAGLSFGITQLISYLSYALA 242
Query: 757 LWYASVLIKQKGSNFGDIMKSFMVLIITALAV 788
LW+ + L+ G + G + + + + +
Sbjct: 243 LWFGAYLVISGGLSVGTVFAFLSLGLQLSGPL 274
|
This family represents a unit of six transmembrane helices. Many members of the ABC transporter family (pfam00005) have two such regions. Length = 274 |
| >gnl|CDD|224041 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 141 bits (359), Expect = 7e-38
Identities = 79/256 (30%), Positives = 121/256 (47%), Gaps = 45/256 (17%)
Query: 206 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKIL 265
+E V ++ V E++N SV+ G+ A +GPSG GKST++ ++ L +PTSG++L
Sbjct: 4 LEIEGVSKSFGGVE--VLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVL 61
Query: 266 LDGHDLKSLQLKWLREQMGLVSQEPALFA-TSIANNILLGKEDASMDRVIEAAKAANA-- 322
LDG + +G V QE AL ++ +N+ LG E + +A
Sbjct: 62 LDGRPVTGP-----GPDIGYVFQEDALLPWLTVLDNVALGLELRGKSKAEARERAKELLE 116
Query: 323 ----HSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAES 378
F + P QLSGG +QR+AIARA+ PK+LLLDE ALDA +
Sbjct: 117 LVGLAGFEDKYPH-----------QLSGGMRQRVAIARALATRPKLLLLDEPFGALDALT 165
Query: 379 ELIVQRALEKIMS--NRTTIVVAH------RLSTVRDVDTIMVLKN--GQVVESGTHVDL 428
+Q L ++ +T ++V H L+ D ++VL N G++ E +DL
Sbjct: 166 REELQDELLRLWEETRKTVLLVTHDVDEAVYLA-----DRVVVLSNRPGRIGEE-LEIDL 219
Query: 429 ----ISKGGEYAALVN 440
I E+ L
Sbjct: 220 PRPRIRGDPEFLELRE 235
|
Length = 248 |
| >gnl|CDD|213255 cd03288, ABCC_SUR2, ATP-binding cassette domain 2 of the sulfonylurea receptor SUR | Back alignment and domain information |
|---|
Score = 141 bits (358), Expect = 9e-38
Identities = 77/241 (31%), Positives = 141/241 (58%), Gaps = 6/241 (2%)
Query: 833 GNIELRNVSFKYP--VRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPI 890
G I++ ++ +Y ++P + +++ + G+ + + G++GSGKS++ R D
Sbjct: 18 GEIKIHDLCVRYENNLKP---VLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIF 74
Query: 891 SGTVLIDGYDIRTLNLRSLRRKIGLVQQEPALFSTTIYENIKYGNEDASEIELMKATKAA 950
G ++IDG DI L L +LR ++ ++ Q+P LFS +I N+ ++ L +A + A
Sbjct: 75 DGKIVIDGIDISKLPLHTLRSRLSIILQDPILFSGSIRFNLD-PECKCTDDRLWEALEIA 133
Query: 951 NAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASEN 1010
+ +P G + V + G S GQ+Q +ARA ++ SIL++DEAT+++D A+EN
Sbjct: 134 QLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFVRKSSILIMDEATASIDMATEN 193
Query: 1011 LIQEALDKLMEGRTTIMVAHRLSTIRNADKIAVLQQGKVAEIGSHEQLLRKENGIYKQLI 1070
++Q+ + RT + +AHR+STI +AD + VL +G + E + E LL +E+G++ L+
Sbjct: 194 ILQKVVMTAFADRTVVTIAHRVSTILDADLVLVLSRGILVECDTPENLLAQEDGVFASLV 253
Query: 1071 R 1071
R
Sbjct: 254 R 254
|
The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 257 |
| >gnl|CDD|213261 cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system | Back alignment and domain information |
|---|
Score = 142 bits (359), Expect = 1e-37
Identities = 77/211 (36%), Positives = 118/211 (55%), Gaps = 19/211 (9%)
Query: 225 NLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLRE--- 281
+++ V G+ F +G SGSGKST++ + RL EPTSGK+L+DG D+ ++ K LRE
Sbjct: 42 DVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRR 101
Query: 282 -QMGLVSQEPALFA-TSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGE 339
++ +V Q AL ++ N+ G E + R +AA A V GL E
Sbjct: 102 KKISMVFQSFALLPHRTVLENVAFGLEVQGVPRAEREERAAEALELV-GLEGWEHKYPDE 160
Query: 340 GGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELI---VQRALEKIMSN--RT 394
LSGG +QR+ +ARA+ +P ILL+DEA SALD LI +Q L ++ + +T
Sbjct: 161 ----LSGGMQQRVGLARALAVDPDILLMDEAFSALDP---LIRREMQDELLRLQAELQKT 213
Query: 395 TIVVAHRLS-TVRDVDTIMVLKNGQVVESGT 424
+ + H L +R D I ++K+G++V+ GT
Sbjct: 214 IVFITHDLDEALRLGDRIAIMKDGRLVQVGT 244
|
This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 269 |
| >gnl|CDD|224049 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 141 bits (358), Expect = 1e-37
Identities = 73/237 (30%), Positives = 125/237 (52%), Gaps = 22/237 (9%)
Query: 835 IELRNVSFKYPVRPDI-TIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGT 893
+ +RN+S Y N++L++ G +L +VG+SGSGKST+ L+ P SG+
Sbjct: 4 LSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGS 63
Query: 894 VLIDGYDI-RTLNLRSLRRKIGLVQQEPAL-------FSTTIYENIKYGNEDASEIELMK 945
+L+DG + ++ R + +V Q+P + E ++ S+ +
Sbjct: 64 ILLDGKPLAPKKRAKAFYRPVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQ---QR 120
Query: 946 ATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALD 1005
+ + G +P + R +LSGGQ+QR+AIARA++ P +L+LDE TSALD
Sbjct: 121 IAELLDQVG----LPPSFLD---RRPHELSGGQRQRIAIARALIPEPKLLILDEPTSALD 173
Query: 1006 TASENLIQEALDKLMEGR--TTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGSHEQLL 1059
+ + I L +L + R T + ++H L+ + + D+IAV+ G++ EIG E+LL
Sbjct: 174 VSVQAQILNLLLELKKERGLTYLFISHDLALVEHMCDRIAVMDNGQIVEIGPTEELL 230
|
Length = 252 |
| >gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins | Back alignment and domain information |
|---|
Score = 138 bits (351), Expect = 1e-37
Identities = 71/222 (31%), Positives = 113/222 (50%), Gaps = 46/222 (20%)
Query: 836 ELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVL 895
E+ N+S Y R T+ ++L+L + AG + ++G +G+GKST++ + P SG +L
Sbjct: 1 EVENLSVGYGGR---TVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEIL 57
Query: 896 IDGYDIRTLNLRSLRRKIGLVQQEPALFSTTIYENIKYGNEDASEIELMKATKAANAHGF 955
+DG D+ +L+ + L RKI V Q ++ A
Sbjct: 58 LDGKDLASLSPKELARKIAYVPQ------------------------ALELLGLA----- 88
Query: 956 ISRMPEGYQSHVGDRGV-QLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQE 1014
H+ DR +LSGG++QRV +ARA+ + P ILLLDE TS LD A + + E
Sbjct: 89 ----------HLADRPFNELSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLE 138
Query: 1015 ALDKL--MEGRTTIMVAHRLS-TIRNADKIAVLQQGKVAEIG 1053
L +L G+T +MV H L+ R AD++ +L+ G++ G
Sbjct: 139 LLRRLARERGKTVVMVLHDLNLAARYADRVILLKDGRIVAQG 180
|
ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. Length = 180 |
| >gnl|CDD|224050 COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 142 bits (360), Expect = 2e-37
Identities = 74/239 (30%), Positives = 126/239 (52%), Gaps = 25/239 (10%)
Query: 205 QIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKI 264
IEF V Y ++ +++N +++ G+ +GPSGSGK+T + M+ RL EPTSG+I
Sbjct: 1 MIEFENVSKRYGNKK--AVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEI 58
Query: 265 LLDGHDLKSLQLKWLREQMGLVSQEPALFA-TSIANNI-----LLG-KEDASMDRVIEAA 317
L+DG D+ L LR ++G V Q+ LF ++A NI LLG ++ R E
Sbjct: 59 LIDGEDISDLDPVELRRKIGYVIQQIGLFPHLTVAENIATVPKLLGWDKERIKKRADELL 118
Query: 318 K--AANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALD 375
+ + + P +LSGGQ+QR+ +ARA+ +P ILL+DE ALD
Sbjct: 119 DLVGLDPSEYADRYPH-----------ELSGGQQQRVGVARALAADPPILLMDEPFGALD 167
Query: 376 AESELIVQRALEKIM--SNRTTIVVAHRLS-TVRDVDTIMVLKNGQVVESGTHVDLISK 431
+ +Q ++++ +T + V H + ++ D I V+ G++V+ T ++++
Sbjct: 168 PITRKQLQEEIKELQKELGKTIVFVTHDIDEALKLADRIAVMDAGEIVQYDTPDEILAN 226
|
Length = 309 |
| >gnl|CDD|188099 TIGR00972, 3a0107s01c2, phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 140 bits (356), Expect = 2e-37
Identities = 81/240 (33%), Positives = 128/240 (53%), Gaps = 27/240 (11%)
Query: 835 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYD-----P 889
IE+ N++ Y + +N+NL + + A++G SG GKST++ + R D
Sbjct: 2 IEIENLNLFYG---EKEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVR 58
Query: 890 ISGTVLIDGYDI--RTLNLRSLRRKIGLVQQEPALFSTTIYENIKYG--------NEDAS 939
I G VL DG DI + +++ LRR++G+V Q+P F +IY+NI YG ++
Sbjct: 59 IEGKVLFDGQDIYDKKIDVVELRRRVGMVFQKPNPFPMSIYDNIAYGPRLHGIKDKKELD 118
Query: 940 EIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDE 999
EI KAA + + + + D + LSGGQ+QR+ IARA+ P +LLLDE
Sbjct: 119 EIVEESLKKAA--------LWDEVKDRLHDSALGLSGGQQQRLCIARALAVEPEVLLLDE 170
Query: 1000 ATSALDTASENLIQEALDKLMEGRTTIMVAHRLS-TIRNADKIAVLQQGKVAEIGSHEQL 1058
TSALD + I+E + +L + T ++V H + R +D+ A G++ E G EQ+
Sbjct: 171 PTSALDPIATGKIEELIQELKKKYTIVIVTHNMQQAARISDRTAFFYDGELVEYGPTEQI 230
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters [Transport and binding proteins, Anions]. Length = 247 |
| >gnl|CDD|226361 COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 143 bits (363), Expect = 3e-37
Identities = 70/238 (29%), Positives = 119/238 (50%), Gaps = 36/238 (15%)
Query: 203 AGQIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSG 262
+E V ++ ++++ + G+ +GPSG GK+T++ M+ +P+SG
Sbjct: 3 KPALEIRNVSKSF--GDFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSG 60
Query: 263 KILLDGHDLKSLQLKWLREQMGLVSQEPALFAT-SIANNILLG-------KEDASMDRVI 314
+ILLDG D+ + + + +G+V Q ALF ++ N+ G K+ RV
Sbjct: 61 EILLDGEDITDVPPE--KRPIGMVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVE 118
Query: 315 EAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSAL 374
EA + F + P QLSGGQ+QR+A+ARA++ PK+LLLDE SAL
Sbjct: 119 EALELVGLEGFADRKPH-----------QLSGGQQQRVALARALVPEPKVLLLDEPLSAL 167
Query: 375 DAESELIVQRALEKIMSNR--TTIVVAH------RLSTVRDVDTIMVLKNGQVVESGT 424
DA+ +++ L+++ T + V H +S D I V+ +G++ + GT
Sbjct: 168 DAKLREQMRKELKELQRELGITFVYVTHDQEEALAMS-----DRIAVMNDGRIEQVGT 220
|
Length = 352 |
| >gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins | Back alignment and domain information |
|---|
Score = 137 bits (349), Expect = 3e-37
Identities = 73/223 (32%), Positives = 113/223 (50%), Gaps = 49/223 (21%)
Query: 207 EFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILL 266
E + Y R V ++L+ S++AG+ +GP+G+GKST++ + L +P+SG+ILL
Sbjct: 1 EVENLSVGYGGRT--VLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILL 58
Query: 267 DGHDLKSLQLKWLREQMGLVSQEPALFATSIANNILLGKEDASMDRVIEAAKAANAHSFV 326
DG DL SL K L ++ V Q AL +A+ L DR
Sbjct: 59 DGKDLASLSPKELARKIAYVPQ--ALELLGLAH--LA-------DRPF------------ 95
Query: 327 EGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAES-----ELI 381
+LSGG++QR+ +ARA+ + P ILLLDE TS LD EL+
Sbjct: 96 ---------------NELSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELL 140
Query: 382 VQRALEKIMSNRTTIVVAHRLS-TVRDVDTIMVLKNGQVVESG 423
+ A E+ +T ++V H L+ R D +++LK+G++V G
Sbjct: 141 RRLARER---GKTVVMVLHDLNLAARYADRVILLKDGRIVAQG 180
|
ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. Length = 180 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 147 bits (374), Expect = 3e-37
Identities = 77/253 (30%), Positives = 134/253 (52%), Gaps = 41/253 (16%)
Query: 835 IELRNVSFKYPVRPDITI--------FENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRF 886
+ +RN+S +Y R + + ++++ + G +L +VG+SGSGKST+ ++
Sbjct: 281 LSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGL 340
Query: 887 YDPISGTVLIDGYD--IRTLNLRSLRRKIGLVQQEPALFST-----TIYENIKYGNEDAS 939
P SG+++ DG D + LR LRR+I +V Q+P +S+ T+ + + +
Sbjct: 341 LPPSSGSIIFDGQDLDLTGGELRRLRRRIQMVFQDP--YSSLNPRMTVGDILA----EPL 394
Query: 940 EIELMKATKAANAHGFISRMPEGYQSHVG-DRGV------QLSGGQKQRVAIARAILKNP 992
I + A R+ E + VG +LSGGQ+QRVAIARA+ P
Sbjct: 395 RIHGGGSGAERRA-----RVAELLE-LVGLPPEFLDRYPHELSGGQRQRVAIARALALEP 448
Query: 993 SILLLDEATSALDTASE----NLIQEALDKLMEGRTTIMVAHRLSTIRN-ADKIAVLQQG 1047
+L+LDE SALD + + NL+++ ++L G T + ++H L+ +R AD++AV+ G
Sbjct: 449 KLLILDEPVSALDVSVQAQVLNLLKDLQEEL--GLTYLFISHDLAVVRYIADRVAVMYDG 506
Query: 1048 KVAEIGSHEQLLR 1060
++ E G E++
Sbjct: 507 RIVEEGPTEKVFE 519
|
Length = 539 |
| >gnl|CDD|213266 cd03299, ABC_ModC_like, ATP-binding cassette domain similar to the molybdate transporter | Back alignment and domain information |
|---|
Score = 139 bits (351), Expect = 6e-37
Identities = 80/218 (36%), Positives = 122/218 (55%), Gaps = 23/218 (10%)
Query: 854 ENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRKI 913
+N++L+V G ++G +GSGKS ++ + F P SG +L++G DI NL +R I
Sbjct: 16 KNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDIT--NLPPEKRDI 73
Query: 914 GLVQQEPALF-STTIYENIKYG----NEDASEIE--LMKATKAANAHGFISRMPEGYQSH 966
V Q ALF T+Y+NI YG D EIE +++ + ++R PE
Sbjct: 74 SYVPQNYALFPHMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGIDHLLNRKPE----- 128
Query: 967 VGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLME--GRT 1024
LSGG++QRVAIARA++ NP ILLLDE SALD ++ ++E L K+ + G T
Sbjct: 129 ------TLSGGEQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVT 182
Query: 1025 TIMVAHRLSTIRN-ADKIAVLQQGKVAEIGSHEQLLRK 1061
+ V H ADK+A++ GK+ ++G E++ +K
Sbjct: 183 VLHVTHDFEEAWALADKVAIMLNGKLIQVGKPEEVFKK 220
|
Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|213267 cd03300, ABC_PotA_N, ATP-binding cassette domain of the polyamine transporter | Back alignment and domain information |
|---|
Score = 138 bits (350), Expect = 7e-37
Identities = 81/234 (34%), Positives = 121/234 (51%), Gaps = 26/234 (11%)
Query: 835 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTV 894
IEL NVS Y + ++L + G ++G SG GK+T++ L+ F P SG +
Sbjct: 1 IELENVSKFYG---GFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEI 57
Query: 895 LIDGYDIRTLNLRSLRRKIGLVQQEPALFS-TTIYENIKYG------NEDASEIELMKAT 947
L+DG DI NL +R + V Q ALF T++ENI +G + + + +A
Sbjct: 58 LLDGKDI--TNLPPHKRPVNTVFQNYALFPHLTVFENIAFGLRLKKLPKAEIKERVAEAL 115
Query: 948 KAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTA 1007
G+ +R P QLSGGQ+QRVAIARA++ P +LLLDE ALD
Sbjct: 116 DLVQLEGYANRKPS-----------QLSGGQQQRVAIARALVNEPKVLLLDEPLGALDLK 164
Query: 1008 SENLIQEALDKL--MEGRTTIMVAHRLS-TIRNADKIAVLQQGKVAEIGSHEQL 1058
+Q L +L G T + V H + +D+IAV+ +GK+ +IG+ E++
Sbjct: 165 LRKDMQLELKRLQKELGITFVFVTHDQEEALTMSDRIAVMNKGKIQQIGTPEEI 218
|
PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 232 |
| >gnl|CDD|237648 PRK14250, PRK14250, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 138 bits (350), Expect = 9e-37
Identities = 78/224 (34%), Positives = 127/224 (56%), Gaps = 17/224 (7%)
Query: 205 QIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKI 264
+IEF EV +Y S + ++++ + G + VGPSG+GKST+I ++ RL +PT G I
Sbjct: 3 EIEFKEV--SYSSFGKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSI 60
Query: 265 LLDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNILLGKEDASMDRVIEAAKAANAHS 324
L+DG D+K++ + LR ++G+V Q+P LF ++ +NI G +++ K +
Sbjct: 61 LIDGVDIKTIDVIDLRRKIGMVFQQPHLFEGTVKDNIEYGP-------MLKGEKNVDVEY 113
Query: 325 FVE--GLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIV 382
++ GL Y T+ LSGG+ QR++IAR + NP++LLLDE TSALD S I+
Sbjct: 114 YLSIVGLNKEYATR---DVKNLSGGEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEII 170
Query: 383 QRALEKIMS--NRTTIVVAHRLSTVRDV-DTIMVLKNGQVVESG 423
+ + K+ + N T I + H + + + D L G +VE
Sbjct: 171 EELIVKLKNKMNLTVIWITHNMEQAKRIGDYTAFLNKGILVEYA 214
|
Length = 241 |
| >gnl|CDD|215595 PLN03130, PLN03130, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 150 bits (380), Expect = 2e-36
Identities = 80/233 (34%), Positives = 137/233 (58%), Gaps = 5/233 (2%)
Query: 203 AGQIEFSEVCFAYPSRPHM--VFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPT 260
+G I+F +V Y RP + V L+F + + VG +G+GKS++++ + R+ E
Sbjct: 1235 SGSIKFEDVVLRY--RPELPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELE 1292
Query: 261 SGKILLDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNILLGKEDASMDRVIEAAKAA 320
G+IL+DG D+ L LR+ +G++ Q P LF+ ++ N+ E D + E+ + A
Sbjct: 1293 RGRILIDGCDISKFGLMDLRKVLGIIPQAPVLFSGTVRFNLDPFNEHNDAD-LWESLERA 1351
Query: 321 NAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESEL 380
+ + G +V E G S GQ+Q +++ARA+LR KIL+LDEAT+A+D ++
Sbjct: 1352 HLKDVIRRNSLGLDAEVSEAGENFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRTDA 1411
Query: 381 IVQRALEKIMSNRTTIVVAHRLSTVRDVDTIMVLKNGQVVESGTHVDLISKGG 433
++Q+ + + + T +++AHRL+T+ D D I+VL G+VVE T +L+S G
Sbjct: 1412 LIQKTIREEFKSCTMLIIAHRLNTIIDCDRILVLDAGRVVEFDTPENLLSNEG 1464
|
Length = 1622 |
| >gnl|CDD|224059 COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 137 bits (347), Expect = 2e-36
Identities = 72/225 (32%), Positives = 117/225 (52%), Gaps = 13/225 (5%)
Query: 206 IEFSEVCFAYPS--RPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGK 263
IE V Y +++N ++AG+ A VGPSGSGKST+++++ L +PTSG+
Sbjct: 2 IELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGE 61
Query: 264 ILLDGHDLKSLQLKWL----REQMGLVSQEPALFAT-SIANNILLGKEDASMDRVIEAAK 318
+L++G DL L K L R+++G V Q L ++ N+ L A
Sbjct: 62 VLINGKDLTKLSEKELAKLRRKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKRA 121
Query: 319 AANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAES 378
A + + + ++LSGGQ+QR+AIARA++ NPKI+L DE T LD+++
Sbjct: 122 AEELLEVLGLEDRLLKKKP----SELSGGQQQRVAIARALINNPKIILADEPTGNLDSKT 177
Query: 379 ELIVQRALEKI--MSNRTTIVVAHRLSTVRDVDTIMVLKNGQVVE 421
V L ++ +T I+V H + D ++ LK+G++ E
Sbjct: 178 AKEVLELLRELNKERGKTIIMVTHDPELAKYADRVIELKDGKIEE 222
|
Length = 226 |
| >gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A | Back alignment and domain information |
|---|
Score = 135 bits (342), Expect = 2e-36
Identities = 56/217 (25%), Positives = 108/217 (49%), Gaps = 47/217 (21%)
Query: 206 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKIL 265
IE + Y + ++++ +V+ G+ + +GP+G+GK+T+I ++ L +P SG+I
Sbjct: 1 IEVRNLSKRYGKKT--ALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIK 58
Query: 266 LDGHDLKSLQLKWLREQMGLVSQEPALFAT-SIANNILLGKEDASMDRVIEAAKAANAHS 324
+ G D+K + ++ ++G + +EP+L+ ++ N+
Sbjct: 59 VLGKDIKKEPEE-VKRRIGYLPEEPSLYENLTVRENL----------------------- 94
Query: 325 FVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQR 384
+LSGG KQR+A+A+A+L +P++L+LDE TS LD ES
Sbjct: 95 ------------------KLSGGMKQRLALAQALLHDPELLILDEPTSGLDPESRREFWE 136
Query: 385 ALEKIMSNRTTIVVA-HRLSTVRDV-DTIMVLKNGQV 419
L ++ TI+++ H L + D + +L NG++
Sbjct: 137 LLRELKKEGKTILLSSHILEEAERLCDRVAILNNGRI 173
|
This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 173 |
| >gnl|CDD|188098 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Score = 150 bits (379), Expect = 2e-36
Identities = 79/230 (34%), Positives = 134/230 (58%), Gaps = 1/230 (0%)
Query: 204 GQIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGK 263
G++EF C Y +V ++N ++ G+ VG +G+GKS++ + R+ E G+
Sbjct: 1283 GRVEFRNYCLRYREDLDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGE 1342
Query: 264 ILLDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNILLGKEDASMDRVIEAAKAANAH 323
I++DG ++ + L LR ++ ++ Q+P LF+ S+ N L S + V A + A+
Sbjct: 1343 IIIDGLNIAKIGLHDLRFKITIIPQDPVLFSGSLRMN-LDPFSQYSDEEVWWALELAHLK 1401
Query: 324 SFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQ 383
+FV LPD + EGG LS GQ+Q + +ARA+LR KIL+LDEAT+A+D E++ ++Q
Sbjct: 1402 TFVSALPDKLDHECAEGGENLSVGQRQLVCLARALLRKTKILVLDEATAAVDLETDNLIQ 1461
Query: 384 RALEKIMSNRTTIVVAHRLSTVRDVDTIMVLKNGQVVESGTHVDLISKGG 433
+ + T + +AHRL+T+ D ++VL G+V E G +L+ + G
Sbjct: 1462 STIRTQFEDCTVLTIAHRLNTIMDYTRVIVLDKGEVAEFGAPSNLLQQRG 1511
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved [Transport and binding proteins, Other]. Length = 1522 |
| >gnl|CDD|188099 TIGR00972, 3a0107s01c2, phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 137 bits (348), Expect = 2e-36
Identities = 69/227 (30%), Positives = 118/227 (51%), Gaps = 24/227 (10%)
Query: 221 MVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYE-----PTSGKILLDGHDL--KS 273
+N+N + + A +GPSG GKST++ + R+ + GK+L DG D+ K
Sbjct: 15 EALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKK 74
Query: 274 LQLKWLREQMGLVSQEPALFATSIANNILLG------KEDASMDRVIEAA--KAANAHSF 325
+ + LR ++G+V Q+P F SI +NI G K+ +D ++E + KAA
Sbjct: 75 IDVVELRRRVGMVFQKPNPFPMSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAA----- 129
Query: 326 VEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRA 385
L D + ++ + LSGGQ+QR+ IARA+ P++LLLDE TSALD + ++
Sbjct: 130 ---LWDEVKDRLHDSALGLSGGQQQRLCIARALAVEPEVLLLDEPTSALDPIATGKIEEL 186
Query: 386 LEKIMSNRTTIVVAHRLSTVRDV-DTIMVLKNGQVVESGTHVDLISK 431
++++ T ++V H + + D +G++VE G + +
Sbjct: 187 IQELKKKYTIVIVTHNMQQAARISDRTAFFYDGELVEYGPTEQIFTN 233
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters [Transport and binding proteins, Anions]. Length = 247 |
| >gnl|CDD|223521 COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 140 bits (355), Expect = 2e-36
Identities = 69/252 (27%), Positives = 123/252 (48%), Gaps = 38/252 (15%)
Query: 835 IELRNVSFKYPVRP-DITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDP---- 889
+E++N+S +P + + ++ ++ G L +VG+SGSGKS + +M
Sbjct: 2 LEVKNLSVSFPTDAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNAR 61
Query: 890 -ISGTVLIDGYDIRTLN---LRSLR-RKIGLVQQEP--AL-----FSTTIYENIKYGNED 937
+ G +L DG D+ +L+ LR +R ++I ++ Q+P +L I E ++ +
Sbjct: 62 IVGGEILFDGKDLLSLSEKELRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKG 121
Query: 938 ASE-------IELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILK 990
S+ IEL++ + + P +LSGG +QRV IA A+
Sbjct: 122 LSKKEAKERAIELLELVGIPDPERRLKSYP-----------HELSGGMRQRVMIAMALAL 170
Query: 991 NPSILLLDEATSALDTASENLIQEALDKLME--GRTTIMVAHRLSTIRN-ADKIAVLQQG 1047
NP +L+ DE T+ALD + I + L +L G I++ H L + AD++AV+ G
Sbjct: 171 NPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLGVVAEIADRVAVMYAG 230
Query: 1048 KVAEIGSHEQLL 1059
++ E G E++
Sbjct: 231 RIVEEGPVEEIF 242
|
Length = 316 |
| >gnl|CDD|224046 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 138 bits (349), Expect = 2e-36
Identities = 74/246 (30%), Positives = 125/246 (50%), Gaps = 37/246 (15%)
Query: 835 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTV 894
IE+ N++ Y RP + E+++L V G A++G +G+GKST++ ++ P SG +
Sbjct: 5 IEVENLTVSYGNRP---VLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEI 61
Query: 895 LIDGYDIRTLNLRSLRRKIGLVQQEPAL---FSTTIYE------------NIKYGNEDAS 939
I G +R R R +IG V Q+ ++ F T+ + + +D
Sbjct: 62 KIFGKPVRK---RRKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKE 118
Query: 940 EIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDE 999
+++ +A + R +G +LSGGQKQRV +ARA+ +NP +LLLDE
Sbjct: 119 KVD--EALERVGMEDLRDR-------QIG----ELSGGQKQRVLLARALAQNPDLLLLDE 165
Query: 1000 ATSALDTASENLIQEALDKL-MEGRTTIMVAHRLST-IRNADKIAVLQQGKVAEIGSHEQ 1057
+ +D A + I + L +L EG+T +MV H L + D++ L + +A G E+
Sbjct: 166 PFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLGLVMAYFDRVICLNRHLIA-SGPPEE 224
Query: 1058 LLRKEN 1063
+L +EN
Sbjct: 225 VLTEEN 230
|
Length = 254 |
| >gnl|CDD|237452 PRK13632, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 138 bits (349), Expect = 3e-36
Identities = 73/248 (29%), Positives = 130/248 (52%), Gaps = 24/248 (9%)
Query: 835 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTV 894
I++ NVSF YP + + +N++ +++ G +A++G +GSGKST+ ++ P SG +
Sbjct: 8 IKVENVSFSYPNSENNAL-KNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEI 66
Query: 895 LIDGYDIRTLNLRSLRRKIGLVQQEP--ALFSTTIYENIKYGNE----DASEIE--LMKA 946
IDG I NL+ +R+KIG++ Q P T+ ++I +G E +++ +
Sbjct: 67 KIDGITISKENLKEIRKKIGIIFQNPDNQFIGATVEDDIAFGLENKKVPPKKMKDIIDDL 126
Query: 947 TKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDT 1006
K ++ + P+ LSGGQKQRVAIA + NP I++ DE+TS LD
Sbjct: 127 AKKVGMEDYLDKEPQ-----------NLSGGQKQRVAIASVLALNPEIIIFDESTSMLDP 175
Query: 1007 ASENLIQEALDKLMEGR--TTIMVAHRLSTIRNADKIAVLQQGKVAEIGSHEQLLRKENG 1064
+ I++ + L + R T I + H + ADK+ V +GK+ G +++L +
Sbjct: 176 KGKREIKKIMVDLRKTRKKTLISITHDMDEAILADKVIVFSEGKLIAQGKPKEILNNKEI 235
Query: 1065 IYKQLIRL 1072
+ + ++
Sbjct: 236 L--EKAKI 241
|
Length = 271 |
| >gnl|CDD|213222 cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein | Back alignment and domain information |
|---|
Score = 134 bits (341), Expect = 1e-35
Identities = 72/225 (32%), Positives = 112/225 (49%), Gaps = 18/225 (8%)
Query: 206 IEFSEVCFAYP--SRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGK 263
IE + Y + ++ S++ G+ A VGPSGSGKST+++++ L PTSG+
Sbjct: 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGE 60
Query: 264 ILLDGHDLKSLQLKWL----REQMGLVSQEPALFAT-SIANNILLGKEDASMDRVIEAAK 318
+ +DG D+ L K L R +G V Q L + N+ L + V + +
Sbjct: 61 VRVDGTDISKLSEKELAAFRRRHIGFVFQSFNLLPDLTALENVELP---LLLAGVPKKER 117
Query: 319 AANAHSFVE--GLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDA 376
A +E GL D +LSGGQ+QR+AIARA+ +PKI+L DE T LD+
Sbjct: 118 RERAEELLERVGLGDRLNHYPS----ELSGGQQQRVAIARALANDPKIILADEPTGNLDS 173
Query: 377 ESELIVQRALEKI--MSNRTTIVVAHRLSTVRDVDTIMVLKNGQV 419
E+ V L ++ + T +VV H D I+ L++G++
Sbjct: 174 ETGKEVMELLRELNKEAGTTIVVVTHDPELAEYADRIIELRDGKI 218
|
This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. Length = 218 |
| >gnl|CDD|213229 cd03262, ABC_HisP_GlnQ, ATP-binding cassette domain of the histidine and glutamine transporters | Back alignment and domain information |
|---|
Score = 134 bits (340), Expect = 1e-35
Identities = 78/227 (34%), Positives = 122/227 (53%), Gaps = 26/227 (11%)
Query: 835 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTV 894
IE++N+ + D + + ++L V G + ++G SGSGKST++ + +P SGT+
Sbjct: 1 IEIKNLHKSFG---DFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTI 57
Query: 895 LIDGYDI--RTLNLRSLRRKIGLVQQEPALFS-TTIYENIKYGNEDASEIELMKATKA-- 949
+IDG + N+ LR+K+G+V Q+ LF T+ ENI I++ +KA
Sbjct: 58 IIDGLKLTDDKKNINELRQKVGMVFQQFNLFPHLTVLENITLA-----PIKVKGMSKAEA 112
Query: 950 -ANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTAS 1008
A + ++ G QLSGGQ+QRVAIARA+ NP ++L DE TSALD
Sbjct: 113 EERALELLEKV--GLADKADAYPAQLSGGQQQRVAIARALAMNPKVMLFDEPTSALDP-- 168
Query: 1009 ENLIQEALDKLM-----EGRTTIMVAHRLSTIRN-ADKIAVLQQGKV 1049
L+ E LD +M EG T ++V H + R AD++ + G++
Sbjct: 169 -ELVGEVLD-VMKDLAEEGMTMVVVTHEMGFAREVADRVIFMDDGRI 213
|
HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, respectively. Histidine permease is a multi-subunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryotic extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein. Length = 213 |
| >gnl|CDD|224052 COG1127, Ttg2A, ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 135 bits (343), Expect = 2e-35
Identities = 74/248 (29%), Positives = 127/248 (51%), Gaps = 46/248 (18%)
Query: 206 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKIL 265
IE V ++ R + + ++ V G+ A +G SGSGKST++ ++ L P G+IL
Sbjct: 9 IEVRGVTKSFGDRV--ILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEIL 66
Query: 266 LDGHDLKSL---QLKWLREQMGLVSQEPALF-ATSIANNI------LLGKEDASMDRV-- 313
+DG D+ L +L +R++MG++ Q+ ALF + ++ N+ ++ + +
Sbjct: 67 IDGEDIPQLSEEELYEIRKRMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELVL 126
Query: 314 --IEAA--KAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDE 369
+E + A A + P +LSGG ++R+A+ARA+ +P++L LDE
Sbjct: 127 MKLELVGLRGAAADLY----PS-----------ELSGGMRKRVALARAIALDPELLFLDE 171
Query: 370 ATSALDAES-----ELI--VQRALEKIMSNRTTIVVAHRLSTVRDV-DTIMVLKNGQVVE 421
TS LD S ELI + AL T I+V H L ++ + D + VL +G+V+
Sbjct: 172 PTSGLDPISAGVIDELIRELNDAL-----GLTVIMVTHDLDSLLTIADRVAVLADGKVIA 226
Query: 422 SGTHVDLI 429
GT +L+
Sbjct: 227 EGTPEELL 234
|
Length = 263 |
| >gnl|CDD|224041 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 134 bits (341), Expect = 2e-35
Identities = 76/251 (30%), Positives = 117/251 (46%), Gaps = 29/251 (11%)
Query: 835 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTV 894
+E+ VS + + + E++NL V G +A++G SG GKST++ L+ P SG V
Sbjct: 4 LEIEGVSKSFG---GVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEV 60
Query: 895 LIDGYDIRTLNLRSLRRKIGLVQQEPALFS-TTIYENIKYGNEDASEIELMKATKAANAH 953
L+DG + IG V QE AL T+ +N+ G E KA A
Sbjct: 61 LLDG-----RPVTGPGPDIGYVFQEDALLPWLTVLDNVALGLELRG---KSKAEARERAK 112
Query: 954 GFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQ 1013
+ + G QLSGG +QRVAIARA+ P +LLLDE ALD + +Q
Sbjct: 113 ELLELV--GLAGFEDKYPHQLSGGMRQRVAIARALATRPKLLLLDEPFGALDALTREELQ 170
Query: 1014 EALDKLME--GRTTIMVAHRLS-TIRNADKIAVL--QQGKVAEI----------GSHEQL 1058
+ L +L E +T ++V H + + AD++ VL + G++ E +
Sbjct: 171 DELLRLWEETRKTVLLVTHDVDEAVYLADRVVVLSNRPGRIGEELEIDLPRPRIRGDPEF 230
Query: 1059 LRKENGIYKQL 1069
L + ++L
Sbjct: 231 LELREELLEEL 241
|
Length = 248 |
| >gnl|CDD|226359 COG3839, MalK, ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 137 bits (347), Expect = 3e-35
Identities = 79/242 (32%), Positives = 124/242 (51%), Gaps = 41/242 (16%)
Query: 205 QIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKI 264
++E V ++ S V +++N ++ G+ +GPSG GKST++ M+ L EPTSG+I
Sbjct: 3 ELELKNVRKSFGSFE--VLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEI 60
Query: 265 LLDGHDLKSLQLKWLREQMGLVSQEPALFAT-SIANNILLG-------KEDASMDRVIEA 316
L+DG D+ L R + +V Q AL+ ++ NI G K + RV E
Sbjct: 61 LIDGRDVTDLP-PEKRG-IAMVFQNYALYPHMTVYENIAFGLKLRGVPKAEID-KRVKEV 117
Query: 317 AKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDA 376
AK + P QLSGGQ+QR+A+ARA++R PK+ LLDE S LDA
Sbjct: 118 AKLLGLEHLLNRKP-----------LQLSGGQRQRVALARALVRKPKVFLLDEPLSNLDA 166
Query: 377 ESE----LIVQRALEKIMSNRTTIVVAHR------LSTVRDVDTIMVLKNGQVVESGTHV 426
+ +++ E++ TTI V H L+ D I+V+ +G++ + GT +
Sbjct: 167 KLRVLMRSEIKKLHERL--GTTTIYVTHDQVEAMTLA-----DRIVVMNDGRIQQVGTPL 219
Query: 427 DL 428
+L
Sbjct: 220 EL 221
|
Length = 338 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 141 bits (359), Expect = 3e-35
Identities = 71/252 (28%), Positives = 122/252 (48%), Gaps = 37/252 (14%)
Query: 835 IELRNVSFKYPVRPD-ITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDP---- 889
+E+ N++ ++ + +++ +V G L +VG+SGSGKST+ +M
Sbjct: 6 LEVENLTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRI 65
Query: 890 ISGTVLIDGYDIRTLN---LRSLR-RKIGLVQQEP-ALF--STTIYENI-----KYGNED 937
SG V++DG D+ L+ +R LR ++I ++ Q+P TI + I +G
Sbjct: 66 TSGEVILDGRDLLGLSEREMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGS 125
Query: 938 ASE-----IELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNP 992
+E +EL++ + R P H QLSGG +QRV IA A+ P
Sbjct: 126 RAEARKRAVELLEQVGLPDPER-RDRYP-----H------QLSGGMRQRVMIAMALALKP 173
Query: 993 SILLLDEATSALDTASENLIQEALDKLME--GRTTIMVAHRLSTIRN-ADKIAVLQQGKV 1049
+L+ DE T+ALD ++ I + L L G + + H L + AD++ V+ +G++
Sbjct: 174 KLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLGVVAELADRVVVMYKGEI 233
Query: 1050 AEIGSHEQLLRK 1061
E G E++L
Sbjct: 234 VETGPTEEILSN 245
|
Length = 539 |
| >gnl|CDD|225438 COG2884, FtsE, Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Score = 133 bits (337), Expect = 3e-35
Identities = 79/230 (34%), Positives = 120/230 (52%), Gaps = 30/230 (13%)
Query: 206 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAF-VGPSGSGKSTIISMVQRLYEPTSGKI 264
I F V AYP +++F + G+ F F GPSG+GKST++ ++ PT GKI
Sbjct: 2 IRFENVSKAYP-GGREALRDVSFHIPKGE-FVFLTGPSGAGKSTLLKLIYGEERPTRGKI 59
Query: 265 LLDGHDLKSL---QLKWLREQMGLVSQEPALFAT-SIANNILL-----GKEDASM-DRVI 314
L++GHDL L ++ +LR Q+G+V Q+ L ++ N+ L GK + RV
Sbjct: 60 LVNGHDLSRLKGREIPFLRRQIGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVS 119
Query: 315 EAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSAL 374
E LP QLSGG++QR+AIARA++ P +LL DE T L
Sbjct: 120 EVLDLVGLKHKARALPS-----------QLSGGEQQRVAIARAIVNQPAVLLADEPTGNL 168
Query: 375 DAESELIVQRALEKIMSNR--TTIVVA-HRLSTVRDVDT-IMVLKNGQVV 420
D + + R E+I NR TT+++A H L V + ++ L++G++V
Sbjct: 169 DPDLSWEIMRLFEEI--NRLGTTVLMATHDLELVNRMRHRVLALEDGRLV 216
|
Length = 223 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 141 bits (357), Expect = 4e-35
Identities = 70/239 (29%), Positives = 117/239 (48%), Gaps = 37/239 (15%)
Query: 213 FAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHD-- 270
F ++++F + G+T VG SGSGKST+ ++ L P+SG I+ DG D
Sbjct: 297 FVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLD 356
Query: 271 LKSLQLKWLREQMGLVSQEPALFAT-----SIANNILLGKEDASMDRVIEAAKAANAHSF 325
L +L+ LR ++ +V Q+P +++ ++ + + E + A+ +
Sbjct: 357 LTGGELRRLRRRIQMVFQDP--YSSLNPRMTVGDIL---AEPLRIHGGGSGAER---RAR 408
Query: 326 VEGLPDGYQTQVGEGG-------TQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAES 378
V L + VG +LSGGQ+QR+AIARA+ PK+L+LDE SALD
Sbjct: 409 VAELLE----LVGLPPEFLDRYPHELSGGQRQRVAIARALALEPKLLILDEPVSALDV-- 462
Query: 379 ELIVQRA----LEKIMSNR--TTIVVAHRLSTVRDV-DTIMVLKNGQVVESGTHVDLIS 430
VQ L+ + T + ++H L+ VR + D + V+ +G++VE G +
Sbjct: 463 --SVQAQVLNLLKDLQEELGLTYLFISHDLAVVRYIADRVAVMYDGRIVEEGPTEKVFE 519
|
Length = 539 |
| >gnl|CDD|213229 cd03262, ABC_HisP_GlnQ, ATP-binding cassette domain of the histidine and glutamine transporters | Back alignment and domain information |
|---|
Score = 133 bits (336), Expect = 4e-35
Identities = 72/215 (33%), Positives = 112/215 (52%), Gaps = 27/215 (12%)
Query: 219 PHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDL--KSLQL 276
V + ++ +V G+ +GPSGSGKST++ + L EP SG I++DG L +
Sbjct: 12 DFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNI 71
Query: 277 KWLREQMGLVSQEPALFA-TSIANNILLG-----KEDASMDRVIEAAKAANAHSFVEGLP 330
LR+++G+V Q+ LF ++ NI L + EA + A GL
Sbjct: 72 NELRQKVGMVFQQFNLFPHLTVLENITLAPIKVKGMSKA-----EAEERALELLEKVGLA 126
Query: 331 DGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAES-----ELIVQRA 385
D + QLSGGQ+QR+AIARA+ NPK++L DE TSALD E +++ A
Sbjct: 127 D----KADAYPAQLSGGQQQRVAIARALAMNPKVMLFDEPTSALDPELVGEVLDVMKDLA 182
Query: 386 LEKIMSNRTTIVVAHRLSTVRDV-DTIMVLKNGQV 419
E + T +VV H + R+V D ++ + +G++
Sbjct: 183 EEGM----TMVVVTHEMGFAREVADRVIFMDDGRI 213
|
HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, respectively. Histidine permease is a multi-subunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryotic extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein. Length = 213 |
| >gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain | Back alignment and domain information |
|---|
Score = 130 bits (328), Expect = 7e-35
Identities = 70/215 (32%), Positives = 100/215 (46%), Gaps = 60/215 (27%)
Query: 836 ELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVL 895
E+ N+SF+Y R +N++L + AG +A+VG +GSGKST++ + P SG
Sbjct: 1 EIENLSFRYGGRT---ALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGE-- 55
Query: 896 IDGYDIRTLNLRSLRRKIGLVQQEPALFSTTIYENIKYGNEDASEIELMKATKAANAHGF 955
I +D +++ L + +
Sbjct: 56 -----------------------------------ILIDGKDIAKLPLEELRRR------ 74
Query: 956 ISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEA 1015
I +P QLSGGQ+QRVA+ARA+L NP +LLLDE TS LD AS + E
Sbjct: 75 IGYVP------------QLSGGQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLEL 122
Query: 1016 LDKLM-EGRTTIMVAHRLSTIRNA-DKIAVLQQGK 1048
L +L EGRT I+V H A D++ VL+ GK
Sbjct: 123 LRELAEEGRTVIIVTHDPELAELAADRVIVLKDGK 157
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157 |
| >gnl|CDD|226643 COG4175, ProV, ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 137 bits (347), Expect = 8e-35
Identities = 78/225 (34%), Positives = 122/225 (54%), Gaps = 33/225 (14%)
Query: 855 NLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLN---LRSLRR 911
+ +L V G ++G SGSGKST++ L+ R +P G +L+DG DI L+ LR LRR
Sbjct: 46 DASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKDIAKLSAAELRELRR 105
Query: 912 -KIGLVQQEPALFS-TTIYENIKYG------NEDASEIELMKATKAANAHGFISRMPEGY 963
KI +V Q AL T+ EN+ +G + E ++A + G+ + P
Sbjct: 106 KKISMVFQSFALLPHRTVLENVAFGLEVQGVPKAEREERALEALELVGLEGYADKYPN-- 163
Query: 964 QSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLI-QEALDKLME- 1021
+LSGG +QRV +ARA+ +P ILL+DEA SALD LI E D+L+E
Sbjct: 164 ---------ELSGGMQQRVGLARALANDPDILLMDEAFSALDP----LIRTEMQDELLEL 210
Query: 1022 ----GRTTIMVAHRLS-TIRNADKIAVLQQGKVAEIGSHEQLLRK 1061
+T + + H L +R D+IA+++ G++ ++G+ E++L
Sbjct: 211 QAKLKKTIVFITHDLDEALRIGDRIAIMKDGEIVQVGTPEEILLN 255
|
Length = 386 |
| >gnl|CDD|213223 cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the binding protein-dependent phosphonate transport system | Back alignment and domain information |
|---|
Score = 132 bits (334), Expect = 1e-34
Identities = 81/238 (34%), Positives = 129/238 (54%), Gaps = 21/238 (8%)
Query: 206 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKIL 265
IE + YP+ ++++ S++ G+ A +GPSG+GKST++ + L EPTSG +L
Sbjct: 1 IEVENLSKTYPNGKK-ALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVL 59
Query: 266 LDGHDLKSLQLKWLRE---QMGLVSQEPALFA-TSIANNILLGKED--------ASMDRV 313
+DG D+ L+ K LR+ Q+G++ Q+ L S+ N+L G+ +
Sbjct: 60 IDGTDINKLKGKALRQLRRQIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPK 119
Query: 314 IEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSA 373
E +A A V GL D + QLSGGQ+QR+AIARA+++ PK++L DE ++
Sbjct: 120 EEKQRALAALERV-GLLDKAYQRAD----QLSGGQQQRVAIARALMQQPKLILADEPVAS 174
Query: 374 LDAESELIVQRALEKIMS--NRTTIVVAHRLSTVRD-VDTIMVLKNGQVVESGTHVDL 428
LD S V L++I T IV H++ R+ D I+ LK+G++V G +L
Sbjct: 175 LDPASSRQVMDLLKRINREEGITVIVSLHQVDLAREYADRIVGLKDGRIVFDGPPAEL 232
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 241 |
| >gnl|CDD|224042 COG1117, PstB, ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 132 bits (335), Expect = 2e-34
Identities = 69/232 (29%), Positives = 116/232 (50%), Gaps = 23/232 (9%)
Query: 206 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTS---- 261
IE ++ Y +++N + K A +GPSG GKST++ + R+ +
Sbjct: 8 IEVRDLNLYYGD--KHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARV 65
Query: 262 -GKILLDGHDL--KSLQLKWLREQMGLVSQEPALFATSIANNILLG------KEDASMDR 312
G++LLDG ++ + + LR ++G+V Q+P F SI +N+ G K+ +
Sbjct: 66 EGEVLLDGKNIYDPKVDVVELRRRVGMVFQKPNPFPMSIYDNVAYGLRLHGIKDKELDEI 125
Query: 313 VIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATS 372
V + K A L D + ++ + LSGGQ+QR+ IARA+ P++LL+DE TS
Sbjct: 126 VESSLKKA-------ALWDEVKDRLHKSALGLSGGQQQRLCIARALAVKPEVLLMDEPTS 178
Query: 373 ALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRDV-DTIMVLKNGQVVESG 423
ALD S L ++ + ++ T ++V H + V D G++VE G
Sbjct: 179 ALDPISTLKIEELITELKKKYTIVIVTHNMQQAARVSDYTAFFYLGELVEFG 230
|
Length = 253 |
| >gnl|CDD|130254 TIGR01186, proV, glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Score = 135 bits (342), Expect = 2e-34
Identities = 73/220 (33%), Positives = 120/220 (54%), Gaps = 25/220 (11%)
Query: 855 NLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLN---LRSLRR 911
+ +L ++ G ++G SGSGKST + ++ R +P +G + IDG +I + LR +RR
Sbjct: 11 DADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRR 70
Query: 912 -KIGLVQQEPALFS-TTIYENIKYG------NEDASEIELMKATKAANAHGFISRMPEGY 963
KIG+V Q+ ALF TI +N G E + + ++ K + R P+
Sbjct: 71 KKIGMVFQQFALFPHMTILQNTSLGPELLGWPEQERKEKALELLKLVGLEEYEHRYPD-- 128
Query: 964 QSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLME-- 1021
+LSGG +QRV +ARA+ P ILL+DEA SALD + +Q+ L KL
Sbjct: 129 ---------ELSGGMQQRVGLARALAAEPDILLMDEAFSALDPLIRDSMQDELKKLQATL 179
Query: 1022 GRTTIMVAHRL-STIRNADKIAVLQQGKVAEIGSHEQLLR 1060
+T + + H L IR D+I +++ G++ ++G+ +++LR
Sbjct: 180 QKTIVFITHDLDEAIRIGDRIVIMKAGEIVQVGTPDEILR 219
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lactis functionally complements an E.coli proU mutant. The comlementing locus is similar to a opuA locus in B.sutlis. This clarifies the differences in nomenclature [Transport and binding proteins, Amino acids, peptides and amines]. Length = 363 |
| >gnl|CDD|188353 TIGR03608, L_ocin_972_ABC, putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Score = 130 bits (329), Expect = 2e-34
Identities = 72/217 (33%), Positives = 115/217 (52%), Gaps = 26/217 (11%)
Query: 837 LRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLI 896
L+N+S K+ D I ++LNL + G+ A++G+SGSGKST+++++ SG V +
Sbjct: 1 LKNISKKFG---DKVILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYL 57
Query: 897 DGYDIRTLNL---RSLRR-KIGLVQQEPALFST-TIYENI----KYGNEDASE-IELMK- 945
+G + LN RR K+G + Q AL T+ EN+ KY E E K
Sbjct: 58 NGQETPPLNSKKASKFRREKLGYLFQNFALIENETVEENLDLGLKYKKLSKKEKREKKKE 117
Query: 946 ATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALD 1005
A + + + + +LSGG++QRVA+ARAILK P ++L DE T +LD
Sbjct: 118 ALEKVGLNLKLKQKI-----------YELSGGEQQRVALARAILKPPPLILADEPTGSLD 166
Query: 1006 TASENLIQEALDKLM-EGRTTIMVAHRLSTIRNADKI 1041
+ + + + L +L EG+T I+V H + AD++
Sbjct: 167 PKNRDEVLDLLLELNDEGKTIIIVTHDPEVAKQADRV 203
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins [Cellular processes, Toxin production and resistance, Transport and binding proteins, Unknown substrate]. Length = 206 |
| >gnl|CDD|213259 cd03292, ABC_FtsE_transporter, ATP-binding cassette domain of the cell division transporter | Back alignment and domain information |
|---|
Score = 130 bits (328), Expect = 3e-34
Identities = 76/223 (34%), Positives = 120/223 (53%), Gaps = 17/223 (7%)
Query: 835 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTV 894
IE NV+ YP + +N+ +SAG + +VG SG+GKST++ L+ + P SGT+
Sbjct: 1 IEFINVTKTYP--NGTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTI 58
Query: 895 LIDGYDIRTLNLRS---LRRKIGLVQQEPALFST-TIYENIKYGNE--DASEIELMKATK 948
++G D+ L R+ LRRKIG+V Q+ L +YEN+ + E E+ K
Sbjct: 59 RVNGQDVSDLRGRAIPYLRRKIGVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRVP 118
Query: 949 AANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTAS 1008
AA + + G +LSGG++QRVAIARAI+ +P+IL+ DE T LD +
Sbjct: 119 AA-----LELV--GLSHKHRALPAELSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDT 171
Query: 1009 ENLIQEALDKLMEGRTTIMVAHRLSTIRNADK--IAVLQQGKV 1049
I L K+ + TT++VA + + + + L++GK+
Sbjct: 172 TWEIMNLLKKINKAGTTVVVATHAKELVDTTRHRVIALERGKL 214
|
FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. Length = 214 |
| >gnl|CDD|226164 COG3638, COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 131 bits (332), Expect = 4e-34
Identities = 78/256 (30%), Positives = 128/256 (50%), Gaps = 27/256 (10%)
Query: 834 NIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGT 893
IE++N+S YP +++NL+++ G +A++G SG+GKST++ + DP SG
Sbjct: 3 MIEVKNLSKTYP--GGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGE 60
Query: 894 VLIDGYDIRTLN---LRSLRRKIGLVQQEPALFS-TTIYENIKYGNEDASEIELMKATKA 949
+L +G I L LR LRR IG++ Q+ L ++ EN+ G L +
Sbjct: 61 ILFNGVQITKLKGKELRKLRRDIGMIFQQFNLVPRLSVLENVLLG-------RLGYTSTW 113
Query: 950 ANAHGFISRMPE----------GYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDE 999
+ G S+ + G R LSGGQ+QRVAIARA+++ P I+L DE
Sbjct: 114 RSLFGLFSKEDKAQALDALERVGILDKAYQRASTLSGGQQQRVAIARALVQQPKIILADE 173
Query: 1000 ATSALDTASENLIQEALDKL--MEGRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGSHE 1056
++LD S + + L + +G T I+ H++ + AD+I L+ G++ G
Sbjct: 174 PVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDLAKKYADRIIGLKAGRIVFDGPAS 233
Query: 1057 QLLRKE-NGIYKQLIR 1071
+L + + IY I
Sbjct: 234 ELTDEALDEIYGNEIS 249
|
Length = 258 |
| >gnl|CDD|184586 PRK14240, PRK14240, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 130 bits (330), Expect = 6e-34
Identities = 78/242 (32%), Positives = 120/242 (49%), Gaps = 19/242 (7%)
Query: 832 KGNIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYD--- 888
G I ++++ Y D + +NL + + A++G SG GKST + + R D
Sbjct: 1 MGKISVKDLDLFYG---DFQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIP 57
Query: 889 --PISGTVLIDGYDI--RTLNLRSLRRKIGLVQQEPALFSTTIYENIKYGNEDASEIELM 944
I G VL+DG DI +++ LR+++G+V Q+P F +IY+N+ YG +
Sbjct: 58 SVKIEGEVLLDGQDIYKSDIDVNQLRKRVGMVFQQPNPFPMSIYDNVAYG----PRTHGI 113
Query: 945 KATKAANAHGFISRMPEGYQSHVGDR----GVQLSGGQKQRVAIARAILKNPSILLLDEA 1000
K K + S V DR + LSGGQ+QR+ IARA+ P +LL+DE
Sbjct: 114 KDKKKLDEIVEKSLKGAALWDEVKDRLKKSALGLSGGQQQRLCIARALAVEPEVLLMDEP 173
Query: 1001 TSALDTASENLIQEALDKLMEGRTTIMVAHRL-STIRNADKIAVLQQGKVAEIGSHEQLL 1059
TSALD S I+E + +L + T ++V H + R +DK A G++ E G L
Sbjct: 174 TSALDPISTLKIEELIQELKKDYTIVIVTHNMQQASRISDKTAFFLNGEIVEFGDTVDLF 233
Query: 1060 RK 1061
Sbjct: 234 TN 235
|
Length = 250 |
| >gnl|CDD|226967 COG4608, AppF, ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 131 bits (331), Expect = 7e-34
Identities = 67/236 (28%), Positives = 117/236 (49%), Gaps = 53/236 (22%)
Query: 835 IELRNVSFKYPVR------PDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYD 888
+E++N+ +PV + + ++ + G +L +VG+SG GKST+ L++ +
Sbjct: 5 LEVKNLKKYFPVGKGFGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEE 64
Query: 889 PISGTVLIDGYDIRTLNLRSLRRKIGLVQQEPALFSTTIYENIKYGNEDASEIELMKATK 948
P SG +L +G DI L+ R ++ +EL++
Sbjct: 65 PTSGEILFEGKDITKLSKEERRERV---------------------------LELLEKVG 97
Query: 949 AANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTAS 1008
+ R P H +LSGGQ+QR+ IARA+ NP +++ DE SALD +
Sbjct: 98 LPEEF--LYRYP-----H------ELSGGQRQRIGIARALALNPKLIVADEPVSALDVSV 144
Query: 1009 E----NLIQEALDKLMEGRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGSHEQLL 1059
+ NL+++ ++L G T + ++H LS +R +D+IAV+ GK+ EIG E++
Sbjct: 145 QAQILNLLKDLQEEL--GLTYLFISHDLSVVRYISDRIAVMYLGKIVEIGPTEEVF 198
|
Length = 268 |
| >gnl|CDD|224049 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 130 bits (328), Expect = 1e-33
Identities = 73/233 (31%), Positives = 114/233 (48%), Gaps = 23/233 (9%)
Query: 210 EVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGH 269
+ + N++ ++ G+T VG SGSGKST+ ++ L +P+SG ILLDG
Sbjct: 10 SIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGK 69
Query: 270 DLKSLQ-LKWLREQMGLVSQEPAL-------FATSIANNILLGKEDASMDRVIEAAKAAN 321
L + K + +V Q+P ++ + S R+ E
Sbjct: 70 PLAPKKRAKAFYRPVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQQRIAELLDQVG 129
Query: 322 AH-SFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESEL 380
SF++ P +LSGGQ+QRIAIARA++ PK+L+LDE TSALD +
Sbjct: 130 LPPSFLDRRPH-----------ELSGGQRQRIAIARALIPEPKLLILDEPTSALDVSVQA 178
Query: 381 IVQRALEKIMSNR--TTIVVAHRLSTVRDV-DTIMVLKNGQVVESGTHVDLIS 430
+ L ++ R T + ++H L+ V + D I V+ NGQ+VE G +L+S
Sbjct: 179 QILNLLLELKKERGLTYLFISHDLALVEHMCDRIAVMDNGQIVEIGPTEELLS 231
|
Length = 252 |
| >gnl|CDD|213223 cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the binding protein-dependent phosphonate transport system | Back alignment and domain information |
|---|
Score = 129 bits (326), Expect = 1e-33
Identities = 80/234 (34%), Positives = 127/234 (54%), Gaps = 28/234 (11%)
Query: 835 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTV 894
IE+ N+S YP ++++L ++ G +A++G SG+GKST++ + +P SG+V
Sbjct: 1 IEVENLSKTYP--NGKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSV 58
Query: 895 LIDGYDIRTL---NLRSLRRKIGLVQQEPALFS-TTIYENIKYGNEDA-----------S 939
LIDG DI L LR LRR+IG++ Q+ L ++ EN+ G
Sbjct: 59 LIDGTDINKLKGKALRQLRRQIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFP 118
Query: 940 EIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDE 999
+ E +A A G + + YQ R QLSGGQ+QRVAIARA+++ P ++L DE
Sbjct: 119 KEEKQRALAALERVGLLDKA---YQ-----RADQLSGGQQQRVAIARALMQQPKLILADE 170
Query: 1000 ATSALDTASENLIQEALDKL--MEGRTTIMVAHRLSTIR-NADKIAVLQQGKVA 1050
++LD AS + + L ++ EG T I+ H++ R AD+I L+ G++
Sbjct: 171 PVASLDPASSRQVMDLLKRINREEGITVIVSLHQVDLAREYADRIVGLKDGRIV 224
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 241 |
| >gnl|CDD|226164 COG3638, COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 130 bits (329), Expect = 1e-33
Identities = 80/237 (33%), Positives = 125/237 (52%), Gaps = 19/237 (8%)
Query: 206 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKIL 265
IE + YP H +++N ++ G+ A +GPSG+GKST++ + L +PTSG+IL
Sbjct: 4 IEVKNLSKTYPGG-HQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEIL 62
Query: 266 LDGHD---LKSLQLKWLREQMGLVSQEPALFA-TSIANNILLGKED-----ASMDRVIEA 316
+G LK +L+ LR +G++ Q+ L S+ N+LLG+ S+ +
Sbjct: 63 FNGVQITKLKGKELRKLRRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSK 122
Query: 317 AKAANAHSFVE--GLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSAL 374
A A +E G+ D + LSGGQ+QR+AIARA+++ PKI+L DE ++L
Sbjct: 123 EDKAQALDALERVGILDKAYQRAS----TLSGGQQQRVAIARALVQQPKIILADEPVASL 178
Query: 375 DAESELIVQRALEKIMSNR--TTIVVAHRLSTVRD-VDTIMVLKNGQVVESGTHVDL 428
D ES V L+ I T IV H++ + D I+ LK G++V G +L
Sbjct: 179 DPESAKKVMDILKDINQEDGITVIVNLHQVDLAKKYADRIIGLKAGRIVFDGPASEL 235
|
Length = 258 |
| >gnl|CDD|213202 cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the metal-type transporters | Back alignment and domain information |
|---|
Score = 128 bits (323), Expect = 2e-33
Identities = 63/230 (27%), Positives = 112/230 (48%), Gaps = 34/230 (14%)
Query: 836 ELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVL 895
E+ +++ Y P + E+++ +V G LA+VG +G+GKST++ ++ P SG++
Sbjct: 1 EVEDLTVSYGGHP---VLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIR 57
Query: 896 IDGYDIRTLNLRSLRRKIGLV-QQEPALFSTTIYENIKYGNEDASEIELMKATKAANAHG 954
+ G + R++IG V Q+ I ++ LM
Sbjct: 58 VFGKPLE-----KERKRIGYVPQRRSIDRDFPI---------SVRDVVLMGLYGHKGLFR 103
Query: 955 FISRMPEGYQ-----------SHVGDRGV-QLSGGQKQRVAIARAILKNPSILLLDEATS 1002
+S+ S + DR + +LSGGQ+QRV +ARA++++P +LLLDE +
Sbjct: 104 RLSK--ADKAKVDEALERVGLSELADRQIGELSGGQQQRVLLARALVQDPDLLLLDEPFA 161
Query: 1003 ALDTASENLIQEALDKL-MEGRTTIMVAHRLSTI-RNADKIAVLQQGKVA 1050
+D ++ I E L +L EG T ++V H L + D++ +L + VA
Sbjct: 162 GVDPKTQEDIYELLRELRREGMTILVVTHDLGLVLEYFDRVLLLNRTVVA 211
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. Length = 213 |
| >gnl|CDD|237452 PRK13632, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 129 bits (326), Expect = 3e-33
Identities = 67/233 (28%), Positives = 120/233 (51%), Gaps = 29/233 (12%)
Query: 206 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKIL 265
I+ V F+YP+ + +N++F ++ G+ A +G +GSGKSTI ++ L +P SG+I
Sbjct: 8 IKVENVSFSYPNSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIK 67
Query: 266 LDGHDLKSLQLKWLREQMGLVSQEP--ALFATSIANNILLGKEDASMDR------VIEAA 317
+DG + LK +R+++G++ Q P ++ ++I G E+ + + + A
Sbjct: 68 IDGITISKENLKEIRKKIGIIFQNPDNQFIGATVEDDIAFGLENKKVPPKKMKDIIDDLA 127
Query: 318 KAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAE 377
K +++ P LSGGQKQR+AIA + NP+I++ DE+TS LD +
Sbjct: 128 KKVGMEDYLDKEPQ-----------NLSGGQKQRVAIASVLALNPEIIIFDESTSMLDPK 176
Query: 378 SELIVQRALEKIMS------NRTTIVVAHRLSTVRDVDTIMVLKNGQVVESGT 424
+R ++KIM +T I + H + D ++V G+++ G
Sbjct: 177 G----KREIKKIMVDLRKTRKKTLISITHDMDEAILADKVIVFSEGKLIAQGK 225
|
Length = 271 |
| >gnl|CDD|224043 COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 131 bits (332), Expect = 3e-33
Identities = 74/245 (30%), Positives = 122/245 (49%), Gaps = 31/245 (12%)
Query: 834 NIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGT 893
+I + NV ++ ++++L + +G +A++G SG+GKST++ ++ P +G
Sbjct: 2 SIRINNVKKRFGAFG---ALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGR 58
Query: 894 VLIDGYDIRTL-NLRSLRRKIGLVQQEPALF-STTIYENIKYG----NEDASEIELMKAT 947
+ ++G + + NL RK+G V Q ALF T+ +NI +G E SE E+
Sbjct: 59 IRLNGRVLFDVSNLAVRDRKVGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEI--RA 116
Query: 948 KAA------NAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEAT 1001
+ G R P QLSGGQ+QRVA+ARA+ P +LLLDE
Sbjct: 117 RVEELLRLVQLEGLADRYPA-----------QLSGGQRQRVALARALAVEPKVLLLDEPF 165
Query: 1002 SALDTASENLIQEALDKLME--GRTTIMVAHRLS-TIRNADKIAVLQQGKVAEIGSHEQL 1058
ALD ++ L KL + G TT+ V H + AD++ VL QG++ ++G +++
Sbjct: 166 GALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQEEALELADRVVVLNQGRIEQVGPPDEV 225
Query: 1059 LRKEN 1063
Sbjct: 226 YDHPA 230
|
Length = 345 |
| >gnl|CDD|213268 cd03301, ABC_MalK_N, The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Score = 126 bits (320), Expect = 4e-33
Identities = 75/228 (32%), Positives = 123/228 (53%), Gaps = 24/228 (10%)
Query: 835 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTV 894
+EL NV+ ++ ++T ++LNL ++ G + ++G SG GK+T + ++ +P SG +
Sbjct: 1 VELENVTKRFG---NVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRI 57
Query: 895 LIDGYDIRTLNLRSLRRKIGLVQQEPALF-STTIYENIKYG----NEDASEIELMKATKA 949
I G D+ +L R I +V Q AL+ T+Y+NI +G EI+ + +
Sbjct: 58 YIGGRDVT--DLPPKDRDIAMVFQNYALYPHMTVYDNIAFGLKLRKVPKDEID-ERVREV 114
Query: 950 ANAHGFISRMPEGYQSHVGDRGV-QLSGGQKQRVAIARAILKNPSILLLDEATSALDTAS 1008
A H+ DR QLSGGQ+QRVA+ RAI++ P + L+DE S LD
Sbjct: 115 AELLQI---------EHLLDRKPKQLSGGQRQRVALGRAIVREPKVFLMDEPLSNLDAKL 165
Query: 1009 ENLIQEALDKLME--GRTTIMVAH-RLSTIRNADKIAVLQQGKVAEIG 1053
++ L +L + G TTI V H ++ + AD+IAV+ G++ +IG
Sbjct: 166 RVQMRAELKRLQQRLGTTTIYVTHDQVEAMTMADRIAVMNDGQIQQIG 213
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. Length = 213 |
| >gnl|CDD|236863 PRK11153, metN, DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 130 bits (330), Expect = 5e-33
Identities = 87/243 (35%), Positives = 126/243 (51%), Gaps = 44/243 (18%)
Query: 206 IEFSEV--CFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGK 263
IE + F R N++ + AG+ F +G SG+GKST+I + L PTSG+
Sbjct: 2 IELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGR 61
Query: 264 ILLDGHDLKSL---QLKWLREQMGLVSQEPALFAT-SIANNILLGKEDASMD------RV 313
+L+DG DL +L +L+ R Q+G++ Q L ++ ++ +N+ L E A RV
Sbjct: 62 VLVDGQDLTALSEKELRKARRQIGMIFQHFNLLSSRTVFDNVALPLELAGTPKAEIKARV 121
Query: 314 IE-------AAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILL 366
E + KA D Y QLSGGQKQR+AIARA+ NPK+LL
Sbjct: 122 TELLELVGLSDKA-----------DRYP-------AQLSGGQKQRVAIARALASNPKVLL 163
Query: 367 LDEATSALDAESELIVQRALEKIMSNRT---TIV-VAHRLSTVRDV-DTIMVLKNGQVVE 421
DEATSALD + + L+ I NR TIV + H + V+ + D + V+ G++VE
Sbjct: 164 CDEATSALDPATTRSILELLKDI--NRELGLTIVLITHEMDVVKRICDRVAVIDAGRLVE 221
Query: 422 SGT 424
GT
Sbjct: 222 QGT 224
|
Length = 343 |
| >gnl|CDD|226643 COG4175, ProV, ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 132 bits (333), Expect = 5e-33
Identities = 76/213 (35%), Positives = 119/213 (55%), Gaps = 23/213 (10%)
Query: 225 NLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLRE--- 281
+ + V+ G+ F +G SGSGKST++ ++ RL EPT G+IL+DG D+ L LRE
Sbjct: 46 DASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKDIAKLSAAELRELRR 105
Query: 282 -QMGLVSQEPALFA-TSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGE 339
++ +V Q AL ++ N+ G E + + +A A V GL +GY +
Sbjct: 106 KKISMVFQSFALLPHRTVLENVAFGLEVQGVPKAEREERALEALELV-GL-EGYADKY-- 161
Query: 340 GGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDA------ESELI-VQRALEKIMSN 392
+LSGG +QR+ +ARA+ +P ILL+DEA SALD + EL+ +Q L+K
Sbjct: 162 -PNELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQAKLKK---- 216
Query: 393 RTTIVVAHRLS-TVRDVDTIMVLKNGQVVESGT 424
T + + H L +R D I ++K+G++V+ GT
Sbjct: 217 -TIVFITHDLDEALRIGDRIAIMKDGEIVQVGT 248
|
Length = 386 |
| >gnl|CDD|130254 TIGR01186, proV, glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Score = 131 bits (330), Expect = 6e-33
Identities = 72/214 (33%), Positives = 113/214 (52%), Gaps = 25/214 (11%)
Query: 225 NLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLRE--- 281
+ + ++ G+ F +G SGSGKST + M+ RL EPT+G+I +DG ++ LRE
Sbjct: 11 DADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRR 70
Query: 282 -QMGLVSQEPALFA-TSIANNILLGKEDASMD------RVIEAAKAANAHSFVEGLPDGY 333
++G+V Q+ ALF +I N LG E + +E K + PD
Sbjct: 71 KKIGMVFQQFALFPHMTILQNTSLGPELLGWPEQERKEKALELLKLVGLEEYEHRYPD-- 128
Query: 334 QTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSN- 392
+LSGG +QR+ +ARA+ P ILL+DEA SALD +Q L+K+ +
Sbjct: 129 ---------ELSGGMQQRVGLARALAAEPDILLMDEAFSALDPLIRDSMQDELKKLQATL 179
Query: 393 -RTTIVVAHRL-STVRDVDTIMVLKNGQVVESGT 424
+T + + H L +R D I+++K G++V+ GT
Sbjct: 180 QKTIVFITHDLDEAIRIGDRIVIMKAGEIVQVGT 213
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lactis functionally complements an E.coli proU mutant. The comlementing locus is similar to a opuA locus in B.sutlis. This clarifies the differences in nomenclature [Transport and binding proteins, Amino acids, peptides and amines]. Length = 363 |
| >gnl|CDD|237455 PRK13637, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 129 bits (325), Expect = 7e-33
Identities = 81/244 (33%), Positives = 131/244 (53%), Gaps = 30/244 (12%)
Query: 835 IELRNVSFKY-PVRPDITIFE-----NLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYD 888
I++ N++ Y P FE N+N+++ G + ++G +GSGKST+I +
Sbjct: 3 IKIENLTHIYMEGTP----FEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLK 58
Query: 889 PISGTVLIDGYDI--RTLNLRSLRRKIGLVQQEP--ALFSTTIYENIKYG----NEDASE 940
P SG ++IDG DI + + L +R+K+GLV Q P LF TI ++I +G E
Sbjct: 59 PTSGKIIIDGVDITDKKVKLSDIRKKVGLVFQYPEYQLFEETIEKDIAFGPINLGLSEEE 118
Query: 941 IELMKATKAANAHGFISRMPEGYQSHVGDRG-VQLSGGQKQRVAIARAILKNPSILLLDE 999
IE + +A N G + E Y+ D+ +LSGGQK+RVAIA + P IL+LDE
Sbjct: 119 IE-NRVKRAMNIVG-LDY--EDYK----DKSPFELSGGQKRRVAIAGVVAMEPKILILDE 170
Query: 1000 ATSALDTASENLIQEALDKLME--GRTTIMVAHRLSTI-RNADKIAVLQQGKVAEIGSHE 1056
T+ LD + I + +L + T I+V+H + + + AD+I V+ +GK G+
Sbjct: 171 PTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSMEDVAKLADRIIVMNKGKCELQGTPR 230
Query: 1057 QLLR 1060
++ +
Sbjct: 231 EVFK 234
|
Length = 287 |
| >gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily | Back alignment and domain information |
|---|
Score = 124 bits (315), Expect = 1e-32
Identities = 69/225 (30%), Positives = 107/225 (47%), Gaps = 46/225 (20%)
Query: 835 IELRNVSFKYPVRPDI---TIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVM--RFYDP 889
+ RN++ P + +N++ K G A++G SG+GKST+++ + R
Sbjct: 4 LSFRNLTVTVKSSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLG 63
Query: 890 ISGTVLIDGYDIRTLNLRSLRRKIGLVQQEPALFST-TIYENIKYGNEDASEIELMKATK 948
+SG VLI+G + RS R+ IG V Q+ L T T+ E + +
Sbjct: 64 VSGEVLINGRPLD---KRSFRKIIGYVPQDDILHPTLTVRETLMF--------------- 105
Query: 949 AANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTAS 1008
AA G LSGG+++RV+IA ++ NPS+L LDE TS LD++S
Sbjct: 106 AAKLRG-------------------LSGGERKRVSIALELVSNPSLLFLDEPTSGLDSSS 146
Query: 1009 ENLIQEALDKLM-EGRTTIMVAHRLST--IRNADKIAVLQQGKVA 1050
+ L +L GRT I H+ S+ DK+ +L QG+V
Sbjct: 147 ALQVMSLLRRLADTGRTIICSIHQPSSEIFELFDKLLLLSQGRVI 191
|
ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. Length = 194 |
| >gnl|CDD|172750 PRK14262, PRK14262, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 126 bits (317), Expect = 2e-32
Identities = 76/243 (31%), Positives = 126/243 (51%), Gaps = 27/243 (11%)
Query: 835 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPI---- 890
IE+ N S Y + +N+ +K+ + A++G SG GK+T++ + R D I
Sbjct: 4 IEIENFSAYYG---EKKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFR 60
Query: 891 -SGTVLIDGYDIR--TLNLRSLRRKIGLVQQEPALFSTTIYENIKYG--------NEDAS 939
G + G DI L++ R+K+G+V Q+P F +IY+N+ +G
Sbjct: 61 VEGKIYFKGQDIYDPQLDVTEYRKKVGMVFQKPTPFPMSIYDNVAFGPRIHGVKSKHKLD 120
Query: 940 EIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDE 999
I KAA + + +S + G +LSGGQ+QR+ IARA+ P ++LLDE
Sbjct: 121 RIVEESLKKAA--------LWDEVKSELNKPGTRLSGGQQQRLCIARALAVEPEVILLDE 172
Query: 1000 ATSALDTASENLIQEALDKLMEGRTTIMVAHRLS-TIRNADKIAVLQQGKVAEIGSHEQL 1058
TSALD + I++ L++L E T ++V H + IR AD IA + +G++ E G ++
Sbjct: 173 PTSALDPIATQRIEKLLEELSENYTIVIVTHNIGQAIRIADYIAFMYRGELIEYGPTREI 232
Query: 1059 LRK 1061
+ +
Sbjct: 233 VER 235
|
Length = 250 |
| >gnl|CDD|236523 PRK09452, potA, putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Score = 129 bits (327), Expect = 2e-32
Identities = 80/241 (33%), Positives = 128/241 (53%), Gaps = 26/241 (10%)
Query: 824 ASKEVTEIKGNIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLV 883
+K+ + + +ELR +S + + NL+L ++ G L ++G SG GK+TV+ L+
Sbjct: 4 LNKQPSSLSPLVELRGISKSFD---GKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLI 60
Query: 884 MRFYDPISGTVLIDGYDIRTLNLRSLRRKIGLVQQEPALFS-TTIYENIKYG----NEDA 938
F P SG +++DG DI ++ + R + V Q ALF T++EN+ +G A
Sbjct: 61 AGFETPDSGRIMLDGQDIT--HVPAENRHVNTVFQSYALFPHMTVFENVAFGLRMQKTPA 118
Query: 939 SEIE--LMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILL 996
+EI +M+A + F R P QLSGGQ+QRVAIARA++ P +LL
Sbjct: 119 AEITPRVMEALRMVQLEEFAQRKPH-----------QLSGGQQQRVAIARAVVNKPKVLL 167
Query: 997 LDEATSALDTASENLIQEALDKLME--GRTTIMVAH-RLSTIRNADKIAVLQQGKVAEIG 1053
LDE+ SALD +Q L L G T + V H + + +D+I V++ G++ + G
Sbjct: 168 LDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRDGRIEQDG 227
Query: 1054 S 1054
+
Sbjct: 228 T 228
|
Length = 375 |
| >gnl|CDD|162242 TIGR01187, potA, spermidine/putrescine ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 127 bits (322), Expect = 3e-32
Identities = 72/201 (35%), Positives = 114/201 (56%), Gaps = 23/201 (11%)
Query: 868 VVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRKIGLVQQEPALFS-TT 926
++G SG GK+T++ L+ F P SG++++DG D+ N+ R I +V Q ALF T
Sbjct: 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDV--TNVPPHLRHINMVFQSYALFPHMT 58
Query: 927 IYENIKYG----NEDASEIE--LMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQ 980
+ EN+ +G +EI+ +++A + F R P QLSGGQ+Q
Sbjct: 59 VEENVAFGLKMRKVPRAEIKPRVLEALRLVQLEEFADRKP-----------HQLSGGQQQ 107
Query: 981 RVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLME--GRTTIMVAHRLS-TIRN 1037
RVA+ARA++ P ILLLDE SALD + +Q L + E G T + V H +
Sbjct: 108 RVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVFVTHDQEEAMTM 167
Query: 1038 ADKIAVLQQGKVAEIGSHEQL 1058
+D+IA++++GK+A+IG+ E++
Sbjct: 168 SDRIAIMRKGKIAQIGTPEEI 188
|
This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included) [Transport and binding proteins, Amino acids, peptides and amines]. Length = 325 |
| >gnl|CDD|130041 TIGR00968, 3a0106s01, sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 125 bits (315), Expect = 4e-32
Identities = 83/232 (35%), Positives = 127/232 (54%), Gaps = 18/232 (7%)
Query: 835 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTV 894
IE+ N+S ++ +++NL+V G +A++G SGSGKST++ ++ P SG +
Sbjct: 1 IEIANISKRFG---SFQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRI 57
Query: 895 LIDGYDIRTLNLRSLRRKIGLVQQEPALFS-TTIYENIKYGNEDASEIELMKATKAANAH 953
++G D ++ R RKIG V Q ALF T+ +NI +G +E+ K KA
Sbjct: 58 RLNGQDATRVHAR--DRKIGFVFQHYALFKHLTVRDNIAFG------LEIRKHPKAK-IK 108
Query: 954 GFISRMPEGYQ-SHVGDR-GVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENL 1011
+ + E Q +GDR QLSGGQ+QRVA+ARA+ P +LLLDE ALD
Sbjct: 109 ARVEELLELVQLEGLGDRYPNQLSGGQRQRVALARALAVEPQVLLLDEPFGALDAKVRKE 168
Query: 1012 IQEALDKLME--GRTTIMVAHRLS-TIRNADKIAVLQQGKVAEIGSHEQLLR 1060
++ L KL + TT+ V H + AD+I V+ GK+ +IGS +++
Sbjct: 169 LRSWLRKLHDEVHVTTVFVTHDQEEAMEVADRIVVMSNGKIEQIGSPDEVYD 220
|
[Transport and binding proteins, Anions]. Length = 237 |
| >gnl|CDD|213202 cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the metal-type transporters | Back alignment and domain information |
|---|
Score = 124 bits (313), Expect = 5e-32
Identities = 75/226 (33%), Positives = 122/226 (53%), Gaps = 22/226 (9%)
Query: 207 EFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILL 266
E ++ +Y P V E+++F V G+ A VGP+G+GKST++ + L +PTSG I +
Sbjct: 1 EVEDLTVSYGGHP--VLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRV 58
Query: 267 DGHDLKSLQLKWLREQMGLVSQEPAL---FATSIANNILLG----KEDASMDRVIEAAKA 319
G K L+ + R +G V Q ++ F S+ + +L+G K + AK
Sbjct: 59 FG---KPLEKERKR--IGYVPQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKV 113
Query: 320 ANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESE 379
A V GL + Q+GE LSGGQ+QR+ +ARA++++P +LLLDE + +D +++
Sbjct: 114 DEALERV-GLSELADRQIGE----LSGGQQQRVLLARALVQDPDLLLLDEPFAGVDPKTQ 168
Query: 380 LIVQRALEKI-MSNRTTIVVAHRLSTVRD-VDTIMVLKNGQVVESG 423
+ L ++ T +VV H L V + D +++L N VV SG
Sbjct: 169 EDIYELLRELRREGMTILVVTHDLGLVLEYFDRVLLL-NRTVVASG 213
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. Length = 213 |
| >gnl|CDD|182692 PRK10744, pstB, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 125 bits (316), Expect = 5e-32
Identities = 85/259 (32%), Positives = 129/259 (49%), Gaps = 35/259 (13%)
Query: 823 PASKEVTEIKGNIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISL 882
V I++RN++F Y +N+NL ++ + A +G SG GKST++
Sbjct: 2 AMMSMVATAPSKIQVRNLNFYYG---KFHALKNINLDIAKNQVTAFIGPSGCGKSTLLRT 58
Query: 883 VMRFYD--P---ISGTVLIDGYDIRT--LNLRSLRRKIGLVQQEPALFSTTIYENIKYG- 934
R Y+ P G +L+DG +I T ++ LR K+G+V Q+P F +IY+NI +G
Sbjct: 59 FNRMYELYPEQRAEGEILLDGENILTPKQDIALLRAKVGMVFQKPTPFPMSIYDNIAFGV 118
Query: 935 --NEDASEIEL----MKA-TKAANAHGFISRMPEGYQSHVGDR----GVQLSGGQKQRVA 983
E S E+ A TKAA + V D+ G LSGGQ+QR+
Sbjct: 119 RLFEKLSRAEMDERVEWALTKAA------------LWNEVKDKLHQSGYSLSGGQQQRLC 166
Query: 984 IARAILKNPSILLLDEATSALDTASENLIQEALDKLMEGRTTIMVAHRL-STIRNADKIA 1042
IAR I P +LLLDE SALD S I+E + +L + T ++V H + R +D A
Sbjct: 167 IARGIAIRPEVLLLDEPCSALDPISTGRIEELITELKQDYTVVIVTHNMQQAARCSDYTA 226
Query: 1043 VLQQGKVAEIGSHEQLLRK 1061
+ G++ E G+ + + K
Sbjct: 227 FMYLGELIEFGNTDTIFTK 245
|
Length = 260 |
| >gnl|CDD|225438 COG2884, FtsE, Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Score = 123 bits (312), Expect = 7e-32
Identities = 71/236 (30%), Positives = 112/236 (47%), Gaps = 29/236 (12%)
Query: 835 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTV 894
I NVS YP + +++ + G + + G SG+GKST++ L+ P G +
Sbjct: 2 IRFENVSKAYPGGREA--LRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKI 59
Query: 895 LIDGYDIRTLNLRS---LRRKIGLVQQEPALFST-TIYENIKYGNEDASEIELMKATKAA 950
L++G+D+ L R LRR+IG+V Q+ L T+YEN+ + +
Sbjct: 60 LVNGHDLSRLKGREIPFLRRQIGVVFQDFRLLPDRTVYENVAL----PLRVIGKPPREIR 115
Query: 951 NAHGFISRMPE-----GYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALD 1005
R+ E G + QLSGG++QRVAIARAI+ P++LL DE T LD
Sbjct: 116 ------RRVSEVLDLVGLKHKARALPSQLSGGEQQRVAIARAIVNQPAVLLADEPTGNLD 169
Query: 1006 --TASE--NLIQEALDKLMEGRTTIMVAHRLSTIRNADK-IAVLQQGKVAEIGSHE 1056
+ E L +E +++L G T +M H L + + L+ G++ S
Sbjct: 170 PDLSWEIMRLFEE-INRL--GTTVLMATHDLELVNRMRHRVLALEDGRLVRDESRG 222
|
Length = 223 |
| >gnl|CDD|213230 cd03263, ABC_subfamily_A, ATP-binding cassette domain of the lipid transporters, subfamily A | Back alignment and domain information |
|---|
Score = 123 bits (312), Expect = 7e-32
Identities = 68/227 (29%), Positives = 119/227 (52%), Gaps = 19/227 (8%)
Query: 835 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTV 894
+++RN++ Y + ++L+L V G ++G +G+GK+T + ++ P SGT
Sbjct: 1 LQIRNLTKTYKKGTKPAV-DDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTA 59
Query: 895 LIDGYDIRTLNLRSLRRKIGLVQQEPALFST-TIYENIKY-----GNEDASEIELMKATK 948
I+GY IRT + ++ R+ +G Q ALF T+ E++++ G L K+
Sbjct: 60 YINGYSIRT-DRKAARQSLGYCPQFDALFDELTVREHLRFYARLKG--------LPKSEI 110
Query: 949 AANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTAS 1008
+ + G R LSGG K+++++A A++ PS+LLLDE TS LD AS
Sbjct: 111 KEEVELLLRVL--GLTDKANKRARTLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPAS 168
Query: 1009 ENLIQEALDKLMEGRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGS 1054
I + + ++ +GR+ I+ H + D+IA++ GK+ IGS
Sbjct: 169 RRAIWDLILEVRKGRSIILTTHSMDEAEALCDRIAIMSDGKLRCIGS 215
|
The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. Length = 220 |
| >gnl|CDD|184209 PRK13650, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 125 bits (316), Expect = 8e-32
Identities = 79/240 (32%), Positives = 123/240 (51%), Gaps = 22/240 (9%)
Query: 206 IEFSEVCFAY-PSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKI 264
IE + F Y + +++F V G+ + +G +GSGKST + ++ L E SG+I
Sbjct: 5 IEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQI 64
Query: 265 LLDGHDLKSLQLKWLREQMGLVSQEP--ALFATSIANNILLGKEDASMD------RVIEA 316
++DG L + +R ++G+V Q P ++ +++ G E+ + RV EA
Sbjct: 65 IIDGDLLTEENVWDIRHKIGMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKERVNEA 124
Query: 317 AKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDA 376
+ F E P +LSGGQKQR+AIA AV PKI++LDEATS LD
Sbjct: 125 LELVGMQDFKEREP-----------ARLSGGQKQRVAIAGAVAMRPKIIILDEATSMLDP 173
Query: 377 ESELIVQRALEKIMS--NRTTIVVAHRLSTVRDVDTIMVLKNGQVVESGTHVDLISKGGE 434
E L + + ++ I T I + H L V D ++V+KNGQV + T +L S+G +
Sbjct: 174 EGRLELIKTIKGIRDDYQMTVISITHDLDEVALSDRVLVMKNGQVESTSTPRELFSRGND 233
|
Length = 279 |
| >gnl|CDD|226967 COG4608, AppF, ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 124 bits (313), Expect = 2e-31
Identities = 67/225 (29%), Positives = 103/225 (45%), Gaps = 61/225 (27%)
Query: 218 RPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSL--- 274
R + ++FS+ G+T VG SG GKST+ ++ L EPTSG+IL +G D+ L
Sbjct: 24 RYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDITKLSKE 83
Query: 275 -QLKWLREQMGLVSQEPALFATSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGY 333
+ + + E + V G + + R H
Sbjct: 84 ERRERVLELLEKV-----------------GLPEEFLYR--------YPH---------- 108
Query: 334 QTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQ-------RAL 386
+LSGGQ+QRI IARA+ NPK+++ DE SALD VQ + L
Sbjct: 109 ---------ELSGGQRQRIGIARALALNPKLIVADEPVSALDV----SVQAQILNLLKDL 155
Query: 387 EKIMSNRTTIVVAHRLSTVRDV-DTIMVLKNGQVVESGTHVDLIS 430
++ + T + ++H LS VR + D I V+ G++VE G ++ S
Sbjct: 156 QEELGL-TYLFISHDLSVVRYISDRIAVMYLGKIVEIGPTEEVFS 199
|
Length = 268 |
| >gnl|CDD|226360 COG3840, ThiQ, ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 122 bits (309), Expect = 2e-31
Identities = 81/238 (34%), Positives = 120/238 (50%), Gaps = 34/238 (14%)
Query: 835 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTV 894
+ L +V F Y P +L V AG +A++G SG+GKST+++L+ F P SG +
Sbjct: 2 LALDDVRFSYGHLP----MR-FDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEI 56
Query: 895 LIDGYDIRTLNLRSLRRKIGLVQQEPALFS-TTIYENIKYGNE-----DASEIELMKATK 948
LI+G D R + ++ QE LF+ T+ +NI G +A + E ++A
Sbjct: 57 LINGVDHTASP--PAERPVSMLFQENNLFAHLTVAQNIGLGLSPGLKLNAEQREKVEAAA 114
Query: 949 AA-NAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTA 1007
A GF+ R+P +LSGGQ+QRVA+AR +++ ILLLDE SALD A
Sbjct: 115 AQVGLAGFLKRLPG-----------ELSGGQRQRVALARCLVREQPILLLDEPFSALDPA 163
Query: 1008 SENLIQEALDKLM-----EGRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGSHEQLL 1059
L E L + T +MV H AD++ L G++A GS ++LL
Sbjct: 164 ---LRAEMLALVSQLCDERKMTLLMVTHHPEDAARIADRVVFLDNGRIAAQGSTQELL 218
|
Length = 231 |
| >gnl|CDD|213266 cd03299, ABC_ModC_like, ATP-binding cassette domain similar to the molybdate transporter | Back alignment and domain information |
|---|
Score = 122 bits (308), Expect = 3e-31
Identities = 70/218 (32%), Positives = 113/218 (51%), Gaps = 23/218 (10%)
Query: 224 ENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQM 283
+N++ V+ G F +GP+GSGKS ++ + +P SGKILL+G D+ +L + + +
Sbjct: 16 KNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPPE--KRDI 73
Query: 284 GLVSQEPALFA-TSIANNILLG----KEDASMD--RVIEAAKAANAHSFVEGLPDGYQTQ 336
V Q ALF ++ NI G K D +V+E A+ + P
Sbjct: 74 SYVPQNYALFPHMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGIDHLLNRKP------ 127
Query: 337 VGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNR--T 394
LSGG++QR+AIARA++ NPKILLLDE SALD ++ ++ L+KI T
Sbjct: 128 -----ETLSGGEQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVT 182
Query: 395 TIVVAHRLSTVRDV-DTIMVLKNGQVVESGTHVDLISK 431
+ V H + D + ++ NG++++ G ++ K
Sbjct: 183 VLHVTHDFEEAWALADKVAIMLNGKLIQVGKPEEVFKK 220
|
Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|213186 cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component of branched chain amino acids transport system | Back alignment and domain information |
|---|
Score = 122 bits (308), Expect = 5e-31
Identities = 65/214 (30%), Positives = 107/214 (50%), Gaps = 19/214 (8%)
Query: 225 NLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMG 284
+++FSV G+ +GP+G+GK+T+ +++ PTSG +L DG D+ L ++G
Sbjct: 18 DVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPH-EIARLG 76
Query: 285 LVS--QEPALFAT-SIANNILLG-----KEDASMDRVIEAAKAAN--AHSFVE--GLPDG 332
+ Q P LF ++ N+++ + R + A A +E GL D
Sbjct: 77 IGRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADL 136
Query: 333 YQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSAL-DAESELIVQRALEKIMS 391
GE LS GQ++R+ IARA+ +PK+LLLDE + L E+E + + E
Sbjct: 137 ADRPAGE----LSYGQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRER 192
Query: 392 NRTTIVVAHRLSTVRDV-DTIMVLKNGQVVESGT 424
T ++V H + V + D + VL G+V+ GT
Sbjct: 193 GITVLLVEHDMDVVMSLADRVTVLDQGRVIAEGT 226
|
The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). Length = 236 |
| >gnl|CDD|213267 cd03300, ABC_PotA_N, ATP-binding cassette domain of the polyamine transporter | Back alignment and domain information |
|---|
Score = 121 bits (306), Expect = 6e-31
Identities = 71/229 (31%), Positives = 111/229 (48%), Gaps = 17/229 (7%)
Query: 206 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKIL 265
IE V Y + ++ + G+ F +GPSG GK+T++ ++ PTSG+IL
Sbjct: 1 IELENVSKFYGGFV--ALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEIL 58
Query: 266 LDGHDLKSLQLKWLREQMGLVSQEPALFA-TSIANNILLGKEDASMDRVIEAAKAANAHS 324
LDG D+ L + + V Q ALF ++ NI G + + + A A
Sbjct: 59 LDGKDI--TNLPPHKRPVNTVFQNYALFPHLTVFENIAFGLRLKKLPKAEIKERVAEALD 116
Query: 325 FV--EGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIV 382
V EG + +Q LSGGQ+QR+AIARA++ PK+LLLDE ALD + +
Sbjct: 117 LVQLEGYANRKPSQ-------LSGGQQQRVAIARALVNEPKVLLLDEPLGALDLKLRKDM 169
Query: 383 QRALEKIMSNR--TTIVVAHRLSTVRDV-DTIMVLKNGQVVESGTHVDL 428
Q L+++ T + V H + D I V+ G++ + GT ++
Sbjct: 170 QLELKRLQKELGITFVFVTHDQEEALTMSDRIAVMNKGKIQQIGTPEEI 218
|
PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 232 |
| >gnl|CDD|237455 PRK13637, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 123 bits (310), Expect = 6e-31
Identities = 77/217 (35%), Positives = 115/217 (52%), Gaps = 28/217 (12%)
Query: 224 ENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDL--KSLQLKWLRE 281
+N+N ++ G+ +G +GSGKST+I + L +PTSGKI++DG D+ K ++L +R+
Sbjct: 24 DNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDIRK 83
Query: 282 QMGLVSQEP--ALFATSIANNILLG------KEDASMDRVIEAAKAANAHSFVEGLPDGY 333
++GLV Q P LF +I +I G E+ +RV A GL Y
Sbjct: 84 KVGLVFQYPEYQLFEETIEKDIAFGPINLGLSEEEIENRVKRAMNIV-------GLD--Y 134
Query: 334 QTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMS-- 391
+ + +LSGGQK+R+AIA V PKIL+LDE T+ LD + L KI
Sbjct: 135 EDYKDKSPFELSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKGR---DEILNKIKELH 191
Query: 392 ---NRTTIVVAHRLSTV-RDVDTIMVLKNGQVVESGT 424
N T I+V+H + V + D I+V+ G+ GT
Sbjct: 192 KEYNMTIILVSHSMEDVAKLADRIIVMNKGKCELQGT 228
|
Length = 287 |
| >gnl|CDD|184209 PRK13650, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 122 bits (308), Expect = 8e-31
Identities = 75/240 (31%), Positives = 122/240 (50%), Gaps = 23/240 (9%)
Query: 835 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTV 894
IE++N++FKY + +++ V G L+++G +GSGKST + L+ + SG +
Sbjct: 5 IEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQI 64
Query: 895 LIDGYDIRTLNLRSLRRKIGLVQQEP--ALFSTTIYENIKYGNEDAS-EIELMK-----A 946
+IDG + N+ +R KIG+V Q P T+ +++ +G E+ E MK A
Sbjct: 65 IIDGDLLTEENVWDIRHKIGMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKERVNEA 124
Query: 947 TKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDT 1006
+ F R P +LSGGQKQRVAIA A+ P I++LDEATS LD
Sbjct: 125 LELVGMQDFKEREP-----------ARLSGGQKQRVAIAGAVAMRPKIIILDEATSMLDP 173
Query: 1007 ASE-NLIQEALDKLME--GRTTIMVAHRLSTIRNADKIAVLQQGKVAEIGSHEQLLRKEN 1063
LI+ + + + T I + H L + +D++ V++ G+V + +L + N
Sbjct: 174 EGRLELIK-TIKGIRDDYQMTVISITHDLDEVALSDRVLVMKNGQVESTSTPRELFSRGN 232
|
Length = 279 |
| >gnl|CDD|224043 COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 124 bits (313), Expect = 9e-31
Identities = 74/233 (31%), Positives = 122/233 (52%), Gaps = 20/233 (8%)
Query: 205 QIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKI 264
I + V + + ++++ + +G+ A +GPSG+GKST++ ++ L P +G+I
Sbjct: 2 SIRINNVKKRFGAFG--ALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRI 59
Query: 265 LLDGHDLKSLQLKWLRE-QMGLVSQEPALFA-TSIANNILLGKEDASMDRVIEAAKAANA 322
L+G L + +R+ ++G V Q ALF ++A+NI G + +R EA A
Sbjct: 60 RLNGRVLFDVSNLAVRDRKVGFVFQHYALFPHMTVADNIAFGLK-VRKERPSEAEIRARV 118
Query: 323 HSFV-----EGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAE 377
+ EGL D Y Q LSGGQ+QR+A+ARA+ PK+LLLDE ALDA+
Sbjct: 119 EELLRLVQLEGLADRYPAQ-------LSGGQRQRVALARALAVEPKVLLLDEPFGALDAK 171
Query: 378 SELIVQRALEKIMSNR--TTIVVAHRLSTVRDV-DTIMVLKNGQVVESGTHVD 427
++R L K+ TT+ V H ++ D ++VL G++ + G +
Sbjct: 172 VRKELRRWLRKLHDRLGVTTVFVTHDQEEALELADRVVVLNQGRIEQVGPPDE 224
|
Length = 345 |
| >gnl|CDD|184586 PRK14240, PRK14240, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 121 bits (305), Expect = 1e-30
Identities = 71/222 (31%), Positives = 120/222 (54%), Gaps = 22/222 (9%)
Query: 225 NLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYE-----PTSGKILLDGHDL--KSLQLK 277
+N ++ + A +GPSG GKST + + R+ + G++LLDG D+ + +
Sbjct: 21 KINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDIDVN 80
Query: 278 WLREQMGLVSQEPALFATSIANNILLG------KEDASMDRVIEAA-KAANAHSFVEGLP 330
LR+++G+V Q+P F SI +N+ G K+ +D ++E + K A L
Sbjct: 81 QLRKRVGMVFQQPNPFPMSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGA-------ALW 133
Query: 331 DGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIM 390
D + ++ + LSGGQ+QR+ IARA+ P++LL+DE TSALD S L ++ ++++
Sbjct: 134 DEVKDRLKKSALGLSGGQQQRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELK 193
Query: 391 SNRTTIVVAHRL-STVRDVDTIMVLKNGQVVESGTHVDLISK 431
+ T ++V H + R D NG++VE G VDL +
Sbjct: 194 KDYTIVIVTHNMQQASRISDKTAFFLNGEIVEFGDTVDLFTN 235
|
Length = 250 |
| >gnl|CDD|172750 PRK14262, PRK14262, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 121 bits (305), Expect = 1e-30
Identities = 70/226 (30%), Positives = 124/226 (54%), Gaps = 24/226 (10%)
Query: 222 VFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYE-----PTSGKILLDGHDL--KSL 274
+N+ + + A +GPSG GK+T++ + R+ + GKI G D+ L
Sbjct: 18 AVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQL 77
Query: 275 QLKWLREQMGLVSQEPALFATSIANNILLG------KEDASMDRVIEAA--KAANAHSFV 326
+ R+++G+V Q+P F SI +N+ G K +DR++E + KAA
Sbjct: 78 DVTEYRKKVGMVFQKPTPFPMSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAA------ 131
Query: 327 EGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRAL 386
L D ++++ + GT+LSGGQ+QR+ IARA+ P+++LLDE TSALD + +++ L
Sbjct: 132 --LWDEVKSELNKPGTRLSGGQQQRLCIARALAVEPEVILLDEPTSALDPIATQRIEKLL 189
Query: 387 EKIMSNRTTIVVAHRLS-TVRDVDTIMVLKNGQVVESGTHVDLISK 431
E++ N T ++V H + +R D I + G+++E G +++ +
Sbjct: 190 EELSENYTIVIVTHNIGQAIRIADYIAFMYRGELIEYGPTREIVER 235
|
Length = 250 |
| >gnl|CDD|131367 TIGR02314, ABC_MetN, D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 124 bits (312), Expect = 1e-30
Identities = 90/241 (37%), Positives = 132/241 (54%), Gaps = 27/241 (11%)
Query: 835 IELRNVSFKYPV-RPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGT 893
I+L N++ + I N++L V AG+ V+G SG+GKST+I V P SG+
Sbjct: 2 IKLSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGS 61
Query: 894 VLIDGYDIRTL---NLRSLRRKIGLVQQEPALFST-TIYENI----KYGNEDASEIELMK 945
V++DG D+ TL L RR+IG++ Q L S+ T++ N+ + N EI+ K
Sbjct: 62 VIVDGQDLTTLSNSELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIK-RK 120
Query: 946 ATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALD 1005
T+ G + + Y S+ LSGGQKQRVAIARA+ NP +LL DEATSALD
Sbjct: 121 VTELLALVG-LGDKHDSYPSN-------LSGGQKQRVAIARALASNPKVLLCDEATSALD 172
Query: 1006 TASENLIQEALDKLME--GRTTIMVAHRLSTI-RNADKIAVL------QQGKVAEIGSHE 1056
A+ I E L ++ G T +++ H + + R D +AV+ +QG V+EI SH
Sbjct: 173 PATTQSILELLKEINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQGTVSEIFSHP 232
Query: 1057 Q 1057
+
Sbjct: 233 K 233
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. Length = 343 |
| >gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 121 bits (305), Expect = 1e-30
Identities = 75/235 (31%), Positives = 126/235 (53%), Gaps = 21/235 (8%)
Query: 205 QIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKI 264
+E + YP+ +N+N +++ G+ A +GPSG+GKST++ + RL EP+SG I
Sbjct: 1 MLEVENLSKVYPNG-KQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSI 59
Query: 265 LLDGHDLKSLQ---LKWLREQMGLVSQEPALFA-TSIANNILLGKEDA-SMDRVI----- 314
LL+G D+ L+ L+ LR ++G++ Q L ++ N+L G+ R +
Sbjct: 60 LLEGTDITKLRGKKLRKLRRRIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFS 119
Query: 315 --EAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATS 372
+ +A +A V GL D + QLSGGQ+QR+AIARA+ + P ++L DE +
Sbjct: 120 EEDKERALSALERV-GLADKAYQRA----DQLSGGQQQRVAIARALAQQPDLILADEPIA 174
Query: 373 ALDAESELIVQRALEKIMSNR--TTIVVAHRLSTVRD-VDTIMVLKNGQVVESGT 424
+LD ++ V L++I T I+ H++ + D I+ LK G++V G
Sbjct: 175 SLDPKTSKQVMDYLKRINKEDGITVIINLHQVDLAKKYADRIVGLKAGEIVFDGA 229
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates [Transport and binding proteins, Anions]. Length = 243 |
| >gnl|CDD|224046 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 120 bits (304), Expect = 2e-30
Identities = 72/236 (30%), Positives = 126/236 (53%), Gaps = 36/236 (15%)
Query: 206 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKIL 265
IE + +Y +RP V E+++ SV+ G+ A +GP+G+GKST++ + L +P+SG+I
Sbjct: 5 IEVENLTVSYGNRP--VLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIK 62
Query: 266 LDGHDLKSLQLKWLREQMGLVSQEPAL---FATSIANNILLG------------KEDASM 310
+ G ++ + K LR +G V Q+ ++ F ++ + +LLG K+D
Sbjct: 63 IFGKPVRK-RRKRLR--IGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDK-- 117
Query: 311 DRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEA 370
++V EA + + Q+GE LSGGQKQR+ +ARA+ +NP +LLLDE
Sbjct: 118 EKVDEALERVGMEDLRD-------RQIGE----LSGGQKQRVLLARALAQNPDLLLLDEP 166
Query: 371 TSALDAESELIVQRALEKI-MSNRTTIVVAHRLSTVRD-VDTIMVLKNGQVVESGT 424
+ +D + + L+++ +T ++V H L V D ++ L N ++ SG
Sbjct: 167 FTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLGLVMAYFDRVICL-NRHLIASGP 221
|
Length = 254 |
| >gnl|CDD|172757 PRK14269, PRK14269, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 120 bits (302), Expect = 2e-30
Identities = 72/217 (33%), Positives = 115/217 (52%), Gaps = 19/217 (8%)
Query: 855 NLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPIS---GTVLIDGYDIRTLNLRSLRR 911
++N+++ + A++G SG GKST + R D I+ G V I+G D++ ++ +LR+
Sbjct: 20 DINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRK 79
Query: 912 KIGLVQQEPALFSTTIYENIKYG--------NEDASEIELMKATKAANAHGFISRMPEGY 963
+G+V Q+P +F +IYENI Y N+D E ++ + + E
Sbjct: 80 NVGMVFQQPNVFVKSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVG-------LFEEV 132
Query: 964 QSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLMEGR 1023
+ + + LSGGQ+QR+ IARA+ P +LLLDE TSALD S +I+E L +L
Sbjct: 133 KDKLKQNALALSGGQQQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSHNL 192
Query: 1024 TTIMVAHRLST-IRNADKIAVLQQGKVAEIGSHEQLL 1059
+ IMV H + R AD A G++ E G ++
Sbjct: 193 SMIMVTHNMQQGKRVADYTAFFHLGELIEFGESKEFF 229
|
Length = 246 |
| >gnl|CDD|184582 PRK14236, PRK14236, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 121 bits (305), Expect = 2e-30
Identities = 80/247 (32%), Positives = 120/247 (48%), Gaps = 41/247 (16%)
Query: 835 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYD-----P 889
+E+RN++ Y D ++++++ R A +G SG GKST++ R D
Sbjct: 26 LEVRNLNLFYG---DKQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCR 82
Query: 890 ISGTVLIDGYDI--RTLNLRSLRRKIGLVQQEPALFSTTIYENIKYGN-----------E 936
I G + +DG +I + +++ LRR++G+V Q P F +IYEN+ YG +
Sbjct: 83 IEGEIRLDGQNIYDKKVDVAELRRRVGMVFQRPNPFPKSIYENVVYGLRLQGINNRRVLD 142
Query: 937 DASEIELMKATKAANAHGFISRMPEGYQSHVGDR----GVQLSGGQKQRVAIARAILKNP 992
+A E L A V DR LSGGQ+QR+ IARAI P
Sbjct: 143 EAVERSLRGA---------------ALWDEVKDRLHENAFGLSGGQQQRLVIARAIAIEP 187
Query: 993 SILLLDEATSALDTASENLIQEALDKLMEGRTTIMVAHRL-STIRNADKIAVLQQGKVAE 1051
+LLLDE TSALD S I+E + +L T ++V H + R +D A + GK+ E
Sbjct: 188 EVLLLDEPTSALDPISTLKIEELITELKSKYTIVIVTHNMQQAARVSDYTAFMYMGKLVE 247
Query: 1052 IGSHEQL 1058
G + L
Sbjct: 248 YGDTDTL 254
|
Length = 272 |
| >gnl|CDD|213263 cd03296, ABC_CysA_sulfate_importer, ATP-binding cassette domain of the sulfate transporter | Back alignment and domain information |
|---|
Score = 120 bits (302), Expect = 2e-30
Identities = 74/238 (31%), Positives = 123/238 (51%), Gaps = 30/238 (12%)
Query: 835 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTV 894
IE+RNVS ++ D ++++L + +G +A++G SGSGK+T++ L+ P SGT+
Sbjct: 3 IEVRNVSKRFG---DFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTI 59
Query: 895 LIDGYDIRTLNLRSLRRKIGLVQQEPALFS-TTIYENIKYGNEDASEIELM-KATKAANA 952
L G D + ++ R +G V Q ALF T+++N+ +G E +A A
Sbjct: 60 LFGGEDATDVPVQ--ERNVGFVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKV 117
Query: 953 H---------GFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSA 1003
H R P QLSGGQ+QRVA+ARA+ P +LLLDE A
Sbjct: 118 HELLKLVQLDWLADRYPA-----------QLSGGQRQRVALARALAVEPKVLLLDEPFGA 166
Query: 1004 LDTASENLIQEALDKLME--GRTTIMVAHRLS-TIRNADKIAVLQQGKVAEIGSHEQL 1058
LD ++ L +L + TT+ V H + AD++ V+ +G++ ++G+ +++
Sbjct: 167 LDAKVRKELRRWLRRLHDELHVTTVFVTHDQEEALEVADRVVVMNKGRIEQVGTPDEV 224
|
Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 239 |
| >gnl|CDD|184205 PRK13646, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 121 bits (305), Expect = 2e-30
Identities = 76/240 (31%), Positives = 127/240 (52%), Gaps = 18/240 (7%)
Query: 206 IEFSEVCFAY-PSRP--HMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSG 262
I F V + Y P H ++N + GK +A VG +GSGKST+I + L +PT+G
Sbjct: 3 IRFDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTG 62
Query: 263 KILLDG----HDLKSLQLKWLREQMGLVSQ--EPALFATSIANNILLGKEDASMDRVIEA 316
+ +D H K ++ +R+++G+V Q E LF ++ I+ G ++ M+ ++
Sbjct: 63 TVTVDDITITHKTKDKYIRPVRKRIGMVFQFPESQLFEDTVEREIIFGPKNFKMN--LDE 120
Query: 317 AKAANAHSFVEGLPDGYQTQVGEGGT-QLSGGQKQRIAIARAVLRNPKILLLDEATSALD 375
K AH + L G+ V Q+SGGQ ++IAI + NP I++LDE T+ LD
Sbjct: 121 VKN-YAHRLLMDL--GFSRDVMSQSPFQMSGGQMRKIAIVSILAMNPDIIVLDEPTAGLD 177
Query: 376 AESELIVQRALEKIM--SNRTTIVVAHRLSTV-RDVDTIMVLKNGQVVESGTHVDLISKG 432
+S+ V R L+ + N+T I+V+H ++ V R D ++V+K G +V + +L
Sbjct: 178 PQSKRQVMRLLKSLQTDENKTIILVSHDMNEVARYADEVIVMKEGSIVSQTSPKELFKDK 237
|
Length = 286 |
| >gnl|CDD|172732 PRK14244, PRK14244, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 120 bits (302), Expect = 2e-30
Identities = 73/221 (33%), Positives = 116/221 (52%), Gaps = 15/221 (6%)
Query: 852 IFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYD-----PISGTVLIDGYDI--RTL 904
I ++NL + A +G SG GKST + R D + G + IDG D+
Sbjct: 20 ILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDT 79
Query: 905 NLRSLRRKIGLVQQEPALFSTTIYENIKYGNEDASEIELMKATKAANAHGFISRMPEGYQ 964
N+ LR K+G+V Q+P F +IY+N+ YG + L K K + S G
Sbjct: 80 NVVLLRAKVGMVFQKPNPFPKSIYDNVAYGPKLHG---LAKNKKKLDEIVEKSLTSVGLW 136
Query: 965 SHVGDR----GVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLM 1020
+GDR +LSGGQ+QR+ IARAI P++LL+DE SALD + N+I+ + +L
Sbjct: 137 EELGDRLKDSAFELSGGQQQRLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELK 196
Query: 1021 EGRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGSHEQLLR 1060
+ T I+V H + + +D++A Q G++ E + +++ +
Sbjct: 197 KNFTIIVVTHSMKQAKKVSDRVAFFQSGRIVEYNTTQEIFK 237
|
Length = 251 |
| >gnl|CDD|213264 cd03297, ABC_ModC_molybdenum_transporter, ATP-binding cassette domain of the molybdenum transport system | Back alignment and domain information |
|---|
Score = 119 bits (300), Expect = 2e-30
Identities = 70/214 (32%), Positives = 108/214 (50%), Gaps = 22/214 (10%)
Query: 853 FENLNLKVS---AGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDG---YDIR-TLN 905
+ LK+ + G SG+GKST++ + P GT++++G +D R +N
Sbjct: 10 LPDFTLKIDFDLNEEVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKIN 69
Query: 906 LRSLRRKIGLVQQEPALFS-TTIYENIKYGNEDASEIELMKATKAANAHGFISRMPEGYQ 964
L +RKIGLV Q+ ALF + EN+ +G +K + + + +
Sbjct: 70 LPPQQRKIGLVFQQYALFPHLNVRENLAFG---------LKRKRNREDRISVDELLDLLG 120
Query: 965 -SHVGDRGV-QLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLME- 1021
H+ +R QLSGG+KQRVA+ARA+ P +LLLDE SALD A + L ++ +
Sbjct: 121 LDHLLNRYPAQLSGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLPELKQIKKN 180
Query: 1022 -GRTTIMVAHRLSTI-RNADKIAVLQQGKVAEIG 1053
I V H LS AD+I V++ G++ IG
Sbjct: 181 LNIPVIFVTHDLSEAEYLADRIVVMEDGRLQYIG 214
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 214 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 126 bits (318), Expect = 4e-30
Identities = 67/240 (27%), Positives = 113/240 (47%), Gaps = 30/240 (12%)
Query: 213 FAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRL----YEPTSGKILLDG 268
FA +++F V+ G+ VG SGSGKST+ + L TSG+++LDG
Sbjct: 15 FATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDG 74
Query: 269 HDLKSLQLKWLREQMG----LVSQEP-ALF--ATSIANNI-------LLGKEDASMDRVI 314
DL L + +R+ G ++ Q+P +I + I G + R +
Sbjct: 75 RDLLGLSEREMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSRAEARKRAV 134
Query: 315 EAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSAL 374
E + GLPD + QLSGG +QR+ IA A+ PK+L+ DE T+AL
Sbjct: 135 ELLEQV-------GLPDP--ERRDRYPHQLSGGMRQRVMIAMALALKPKLLIADEPTTAL 185
Query: 375 DAESELIVQRALEKIMS--NRTTIVVAHRLSTVRDV-DTIMVLKNGQVVESGTHVDLISK 431
D ++ + L+ + + + H L V ++ D ++V+ G++VE+G +++S
Sbjct: 186 DVTTQAQILDLLKDLQRELGMAVLFITHDLGVVAELADRVVVMYKGEIVETGPTEEILSN 245
|
Length = 539 |
| >gnl|CDD|223521 COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 121 bits (307), Expect = 4e-30
Identities = 61/231 (26%), Positives = 104/231 (45%), Gaps = 45/231 (19%)
Query: 224 ENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEP-----TSGKILLDGHDLKSL---- 274
+ ++F + G+ VG SGSGKS + + L G+IL DG DL SL
Sbjct: 22 DGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKE 81
Query: 275 QLKWLREQMGLVSQEP--AL---------FATSIANNILLGKEDASMDRVIEAAKAAN-- 321
K +++ ++ Q+P +L A + + + + +R IE +
Sbjct: 82 LRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIP 141
Query: 322 -----AHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDA 376
S+ P +LSGG +QR+ IA A+ NPK+L+ DE T+ALD
Sbjct: 142 DPERRLKSY----PH-----------ELSGGMRQRVMIAMALALNPKLLIADEPTTALDV 186
Query: 377 ESELIVQRALEKIMSNRTT--IVVAHRLSTVRDV-DTIMVLKNGQVVESGT 424
+ + L+++ + T I++ H L V ++ D + V+ G++VE G
Sbjct: 187 TVQAQILDLLKELQREKGTALILITHDLGVVAEIADRVAVMYAGRIVEEGP 237
|
Length = 316 |
| >gnl|CDD|237651 PRK14266, PRK14266, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 119 bits (300), Expect = 5e-30
Identities = 75/240 (31%), Positives = 124/240 (51%), Gaps = 25/240 (10%)
Query: 835 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPIS--- 891
IE+ N++ + D I +N+NL + A++G SG GKST I + R D I
Sbjct: 4 IEVENLNTYFD---DAHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFR 60
Query: 892 --GTVLIDGYDI--RTLNLRSLRRKIGLVQQEPALFSTTIYENIKYG-------NEDASE 940
G + +DG DI +++ LR+K+G+V Q+P F +I++N+ YG +ED E
Sbjct: 61 HEGHIYLDGVDIYDPAVDVVELRKKVGMVFQKPNPFPKSIFDNVAYGLRIHGEDDEDFIE 120
Query: 941 IELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEA 1000
+ ++ KAA + + + + + LSGGQ+QR+ IAR I +P ++L+DE
Sbjct: 121 ERVEESLKAA-------ALWDEVKDKLDKSALGLSGGQQQRLCIARTIAVSPEVILMDEP 173
Query: 1001 TSALDTASENLIQEALDKLMEGRTTIMVAHRLSTIRNADK-IAVLQQGKVAEIGSHEQLL 1059
SALD S I++ + KL E T ++V H + K + G++ E G +Q+
Sbjct: 174 CSALDPISTTKIEDLIHKLKEDYTIVIVTHNMQQATRVSKYTSFFLNGEIIESGLTDQIF 233
|
Length = 250 |
| >gnl|CDD|188353 TIGR03608, L_ocin_972_ABC, putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Score = 117 bits (296), Expect = 6e-30
Identities = 56/193 (29%), Positives = 106/193 (54%), Gaps = 23/193 (11%)
Query: 220 HMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQ---- 275
++ ++LN +++ GK +A +G SGSGKST+++++ L + SG++ L+G + L
Sbjct: 11 KVILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGQETPPLNSKKA 70
Query: 276 LKWLREQMGLVSQEPALFAT-SIANNILLG------KEDASMDRVIEAAKAANAHSFVEG 328
K+ RE++G + Q AL ++ N+ LG + ++ EA + + ++
Sbjct: 71 SKFRREKLGYLFQNFALIENETVEENLDLGLKYKKLSKKEKREKKKEALEKVGLNLKLK- 129
Query: 329 LPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAE-SELIVQRALE 387
++ E LSGG++QR+A+ARA+L+ P ++L DE T +LD + + ++ LE
Sbjct: 130 ------QKIYE----LSGGEQQRVALARAILKPPPLILADEPTGSLDPKNRDEVLDLLLE 179
Query: 388 KIMSNRTTIVVAH 400
+T I+V H
Sbjct: 180 LNDEGKTIIIVTH 192
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins [Cellular processes, Toxin production and resistance, Transport and binding proteins, Unknown substrate]. Length = 206 |
| >gnl|CDD|213268 cd03301, ABC_MalK_N, The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Score = 117 bits (296), Expect = 7e-30
Identities = 75/233 (32%), Positives = 117/233 (50%), Gaps = 35/233 (15%)
Query: 206 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKIL 265
+E V + + ++LN + G+ +GPSG GK+T + M+ L EPTSG+I
Sbjct: 1 VELENVTKRFGNVT--ALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIY 58
Query: 266 LDGHDLKSLQLKWLREQMGLVSQEPALFA-TSIANNILLG------KEDASMDRVIEAAK 318
+ G D+ L K + +V Q AL+ ++ +NI G +D +RV E A+
Sbjct: 59 IGGRDVTDLPPK--DRDIAMVFQNYALYPHMTVYDNIAFGLKLRKVPKDEIDERVREVAE 116
Query: 319 AANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAE- 377
+E L D Q LSGGQ+QR+A+ RA++R PK+ L+DE S LDA+
Sbjct: 117 LLQ----IEHLLDRKPKQ-------LSGGQRQRVALGRAIVREPKVFLMDEPLSNLDAKL 165
Query: 378 -----SELI-VQRALEKIMSNRTTIVVAH-RLSTVRDVDTIMVLKNGQVVESG 423
+EL +Q+ L TTI V H ++ + D I V+ +GQ+ + G
Sbjct: 166 RVQMRAELKRLQQRLGT-----TTIYVTHDQVEAMTMADRIAVMNDGQIQQIG 213
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. Length = 213 |
| >gnl|CDD|184195 PRK13635, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 119 bits (301), Expect = 8e-30
Identities = 71/239 (29%), Positives = 123/239 (51%), Gaps = 28/239 (11%)
Query: 835 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTV 894
I + ++SF+YP + ++++ V G +A+VG +GSGKST+ L+ P +GT+
Sbjct: 6 IRVEHISFRYPDAATYAL-KDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTI 64
Query: 895 LIDGYDIRTLNLRSLRRKIGLVQQEP--ALFSTTIYENIKYG--NEDASEIELMKATKAA 950
+ G + + +RR++G+V Q P T+ +++ +G N E+++ A
Sbjct: 65 TVGGMVLSEETVWDVRRQVGMVFQNPDNQFVGATVQDDVAFGLENIGVPREEMVERVDQA 124
Query: 951 ----NAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDT 1006
F++R P +LSGGQKQRVAIA + P I++LDEATS LD
Sbjct: 125 LRQVGMEDFLNREPH-----------RLSGGQKQRVAIAGVLALQPDIIILDEATSMLDP 173
Query: 1007 ASENLIQEALD-----KLMEGRTTIMVAHRLSTIRNADKIAVLQQGKVAEIGSHEQLLR 1060
+E L+ K +G T + + H L AD++ V+ +G++ E G+ E++ +
Sbjct: 174 RGR---REVLETVRQLKEQKGITVLSITHDLDEAAQADRVIVMNKGEILEEGTPEEIFK 229
|
Length = 279 |
| >gnl|CDD|131367 TIGR02314, ABC_MetN, D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 121 bits (304), Expect = 1e-29
Identities = 84/237 (35%), Positives = 133/237 (56%), Gaps = 16/237 (6%)
Query: 223 FENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSL---QLKWL 279
N++ V AG+ + +G SG+GKST+I V L PTSG +++DG DL +L +L
Sbjct: 21 LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKA 80
Query: 280 REQMGLVSQEPALFAT-SIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVG 338
R Q+G++ Q L ++ ++ N+ L E + + K + V GL D + +
Sbjct: 81 RRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALV-GLGDKHDSY-- 137
Query: 339 EGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNR----T 394
+ LSGGQKQR+AIARA+ NPK+LL DEATSALD + + L++I NR T
Sbjct: 138 --PSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTQSILELLKEI--NRRLGLT 193
Query: 395 TIVVAHRLSTVRDV-DTIMVLKNGQVVESGTHVDLISKGGEYAALVNLQSSEHLSNP 450
+++ H + V+ + D + V+ NG+++E GT ++ S A ++S+ HLS P
Sbjct: 194 ILLITHEMDVVKRICDCVAVISNGELIEQGTVSEIFSHPKTPLAQKFIRSTLHLSIP 250
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. Length = 343 |
| >gnl|CDD|213259 cd03292, ABC_FtsE_transporter, ATP-binding cassette domain of the cell division transporter | Back alignment and domain information |
|---|
Score = 116 bits (293), Expect = 2e-29
Identities = 65/200 (32%), Positives = 104/200 (52%), Gaps = 14/200 (7%)
Query: 206 IEFSEVCFAYPSRPHMV--FENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGK 263
IEF V YP + + +N S+ AG+ VGPSG+GKST++ ++ + PTSG
Sbjct: 1 IEFINVTKTYP---NGTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGT 57
Query: 264 ILLDGHDLKSL---QLKWLREQMGLVSQEPALFAT-SIANNILLGKEDASMDRVIEAAKA 319
I ++G D+ L + +LR ++G+V Q+ L ++ N+ E + +
Sbjct: 58 IRVNGQDVSDLRGRAIPYLRRKIGVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRV 117
Query: 320 ANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESE 379
A V G + +LSGG++QR+AIARA++ +P IL+ DE T LD ++
Sbjct: 118 PAALELV-----GLSHKHRALPAELSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDTT 172
Query: 380 LIVQRALEKIMSNRTTIVVA 399
+ L+KI TT+VVA
Sbjct: 173 WEIMNLLKKINKAGTTVVVA 192
|
FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. Length = 214 |
| >gnl|CDD|130041 TIGR00968, 3a0106s01, sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 117 bits (295), Expect = 2e-29
Identities = 73/213 (34%), Positives = 114/213 (53%), Gaps = 15/213 (7%)
Query: 222 VFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLRE 281
+++N V G A +GPSGSGKST++ ++ L +P SG+I L+G D + +
Sbjct: 15 ALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHAR--DR 72
Query: 282 QMGLVSQEPALFA-TSIANNILLGKEDASMDRVIEAAKAANAHSFV--EGLPDGYQTQVG 338
++G V Q ALF ++ +NI G E + A+ V EGL D Y Q
Sbjct: 73 KIGFVFQHYALFKHLTVRDNIAFGLEIRKHPKAKIKARVEELLELVQLEGLGDRYPNQ-- 130
Query: 339 EGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMS--NRTTI 396
LSGGQ+QR+A+ARA+ P++LLLDE ALDA+ ++ L K+ + TT+
Sbjct: 131 -----LSGGQRQRVALARALAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTV 185
Query: 397 VVAHRLSTVRDV-DTIMVLKNGQVVESGTHVDL 428
V H +V D I+V+ NG++ + G+ ++
Sbjct: 186 FVTHDQEEAMEVADRIVVMSNGKIEQIGSPDEV 218
|
[Transport and binding proteins, Anions]. Length = 237 |
| >gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 117 bits (295), Expect = 2e-29
Identities = 73/239 (30%), Positives = 119/239 (49%), Gaps = 40/239 (16%)
Query: 835 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTV 894
+E+ N+S YP +N+NL ++ G +A++G SG+GKST++ + R +P SG++
Sbjct: 2 LEVENLSKVYP--NGKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSI 59
Query: 895 LIDGYDIRTLN---LRSLRRKIGLVQQEPALFS-TTIYENIKYGNEDASEIELMKATKAA 950
L++G DI L LR LRR+IG++ Q L T+ EN+ +G
Sbjct: 60 LLEGTDITKLRGKKLRKLRRRIGMIFQHYNLIERLTVLENVLHG--------------RL 105
Query: 951 NAHGFI----SRMPE-------------GYQSHVGDRGVQLSGGQKQRVAIARAILKNPS 993
R E G R QLSGGQ+QRVAIARA+ + P
Sbjct: 106 GYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQRADQLSGGQQQRVAIARALAQQPD 165
Query: 994 ILLLDEATSALDTASENLIQEALDKLME--GRTTIMVAHRLSTIRN-ADKIAVLQQGKV 1049
++L DE ++LD + + + L ++ + G T I+ H++ + AD+I L+ G++
Sbjct: 166 LILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVDLAKKYADRIVGLKAGEI 224
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates [Transport and binding proteins, Anions]. Length = 243 |
| >gnl|CDD|213263 cd03296, ABC_CysA_sulfate_importer, ATP-binding cassette domain of the sulfate transporter | Back alignment and domain information |
|---|
Score = 117 bits (294), Expect = 2e-29
Identities = 72/229 (31%), Positives = 118/229 (51%), Gaps = 21/229 (9%)
Query: 206 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKIL 265
IE V + + ++++ + +G+ A +GPSGSGK+T++ ++ L P SG IL
Sbjct: 3 IEVRNVSKRFGDFVAL--DDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTIL 60
Query: 266 LDGHDLKSLQLKWLREQMGLVSQEPALFA-TSIANNILLG-KEDASMDRVIEAAKAANAH 323
G D + ++ +G V Q ALF ++ +N+ G + +R EA A H
Sbjct: 61 FGGEDATDVPVQ--ERNVGFVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVH 118
Query: 324 SFV-----EGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAES 378
+ + L D Y Q LSGGQ+QR+A+ARA+ PK+LLLDE ALDA+
Sbjct: 119 ELLKLVQLDWLADRYPAQ-------LSGGQRQRVALARALAVEPKVLLLDEPFGALDAKV 171
Query: 379 ELIVQRALEKIMS--NRTTIVVAHRLSTVRDV-DTIMVLKNGQVVESGT 424
++R L ++ + TT+ V H +V D ++V+ G++ + GT
Sbjct: 172 RKELRRWLRRLHDELHVTTVFVTHDQEEALEVADRVVVMNKGRIEQVGT 220
|
Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 239 |
| >gnl|CDD|226970 COG4619, COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 117 bits (294), Expect = 2e-29
Identities = 74/221 (33%), Positives = 120/221 (54%), Gaps = 12/221 (5%)
Query: 835 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTV 894
+EL+ V + I N++L V AG +A+ G SG GKST++ +V P SGT+
Sbjct: 4 LELKQVGYLAGDAK---ILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTL 60
Query: 895 LIDGYDIRTLNLRSLRRKIGLVQQEPALFSTTIYENIKYGNEDASEIELMKATKAANAHG 954
L +G D+ TL + R+++ Q PALF T+ +N+ + +I + +AA A
Sbjct: 61 LFEGEDVSTLKPEAYRQQVSYCAQTPALFGDTVEDNLIF----PWQIRNRRPDRAA-ALD 115
Query: 955 FISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQE 1014
++R S + +LSGG+KQR+A+ R + P ILLLDE TSALD +++ I+E
Sbjct: 116 LLARFALP-DSILTKNITELSGGEKQRIALIRNLQFMPKILLLDEITSALDESNKRNIEE 174
Query: 1015 ALDKLM--EGRTTIMVAH-RLSTIRNADKIAVLQQGKVAEI 1052
+ + + + + + H + IR+ADK+ LQ G E+
Sbjct: 175 MIHRYVREQNVAVLWITHDKDQAIRHADKVITLQPGHAGEM 215
|
Length = 223 |
| >gnl|CDD|130234 TIGR01166, cbiO, cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Score = 115 bits (291), Expect = 2e-29
Identities = 64/198 (32%), Positives = 99/198 (50%), Gaps = 27/198 (13%)
Query: 844 YPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDG----Y 899
YP P++ + LN G LA++G +G+GKST++ + P SG VLIDG Y
Sbjct: 1 YPGGPEV--LKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDY 58
Query: 900 DIRTLNLRSLRRKIGLVQQEP--ALFSTTIYENIKYG------NEDASEIELMKATKAAN 951
+ L R+++GLV Q+P LF+ + +++ +G +E E + +A A
Sbjct: 59 SRK--GLLERRQRVGLVFQDPDDQLFAADVDQDVAFGPLNLGLSEAEVERRVREALTAVG 116
Query: 952 AHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENL 1011
A G R LSGG+K+RVAIA A+ P +LLLDE T+ LD A
Sbjct: 117 ASGLRERPTH-----------CLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGREQ 165
Query: 1012 IQEALDKLMEGRTTIMVA 1029
+ L +L T++++
Sbjct: 166 MLAILRRLRAEGMTVVIS 183
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux [Transport and binding proteins, Cations and iron carrying compounds]. Length = 190 |
| >gnl|CDD|213231 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Score = 116 bits (292), Expect = 3e-29
Identities = 57/229 (24%), Positives = 113/229 (49%), Gaps = 29/229 (12%)
Query: 206 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKIL 265
++ + Y + + ++ ++ G + +GP+G+GK+T++ ++ L P+SG I
Sbjct: 1 LQLENLTKRYGKK--RALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIR 57
Query: 266 LDGHDLKSLQLKWLREQMGLVSQEPALFAT----------SIANNILLGKEDASMDRVIE 315
+DG D+ Q + LR ++G + QE ++ + I + A +D V+E
Sbjct: 58 IDGQDVLK-QPQKLRRRIGYLPQEFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLE 116
Query: 316 AAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALD 375
L D + ++G LSGG ++R+ IA+A++ +P IL++DE T+ LD
Sbjct: 117 LV----------NLGDRAKKKIG----SLSGGMRRRVGIAQALVGDPSILIVDEPTAGLD 162
Query: 376 AESELIVQRALEKIMSNRTTIVVAHRLSTVRDV-DTIMVLKNGQVVESG 423
E + + L ++ +R I+ H + V + + + VL G++V G
Sbjct: 163 PEERIRFRNLLSELGEDRIVILSTHIVEDVESLCNQVAVLNKGKLVFEG 211
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|172733 PRK14245, PRK14245, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 117 bits (293), Expect = 4e-29
Identities = 70/232 (30%), Positives = 117/232 (50%), Gaps = 25/232 (10%)
Query: 835 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGT- 893
I+ R+V+F Y D + +++++ +A +G SG GKST + L R D I T
Sbjct: 4 IDARDVNFWYG---DFHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATR 60
Query: 894 ----VLIDGYDIRTLNLR--SLRRKIGLVQQEPALFSTTIYENIKYG-------NEDASE 940
+ IDG +I ++ LR+ +G+V Q P F +I+EN+ YG +
Sbjct: 61 LEGEIRIDGRNIYDKGVQVDELRKNVGMVFQRPNPFPKSIFENVAYGLRVNGVKDNAFIR 120
Query: 941 IELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEA 1000
+ + K A + + + + + LSGGQ+QR+ IARA+ +PS+LL+DE
Sbjct: 121 QRVEETLKGA-------ALWDEVKDKLKESAFALSGGQQQRLCIARAMAVSPSVLLMDEP 173
Query: 1001 TSALDTASENLIQEALDKLMEGRTTIMVAHRL-STIRNADKIAVLQQGKVAE 1051
SALD S ++E + +L + T ++V H + R +DK A G++ E
Sbjct: 174 ASALDPISTAKVEELIHELKKDYTIVIVTHNMQQAARVSDKTAFFYMGEMVE 225
|
Length = 250 |
| >gnl|CDD|213193 cd03226, ABC_cobalt_CbiO_domain2, Second domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 115 bits (290), Expect = 4e-29
Identities = 59/200 (29%), Positives = 102/200 (51%), Gaps = 21/200 (10%)
Query: 836 ELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVL 895
+ N+SF Y + I ++L+L + AG +A+ G++G+GK+T+ ++ SG++L
Sbjct: 1 RIENISFSY--KKGTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSIL 58
Query: 896 IDGYDIRTLNLRSLRRKIGLVQQEP--ALFSTTIYENIKYGNEDASEIELMKAT--KAAN 951
++G I + R+ IG V Q+ LF+ ++ E + G ++ T K +
Sbjct: 59 LNGKPI---KAKERRKSIGYVMQDVDYQLFTDSVREELLLGLKELDAGNEQAETVLKDLD 115
Query: 952 AHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENL 1011
+ R P S LSGGQKQR+AIA A+L +L+ DE TS LD +
Sbjct: 116 LYALKERHP---LS--------LSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMER 164
Query: 1012 IQEALDKLM-EGRTTIMVAH 1030
+ E + +L +G+ I++ H
Sbjct: 165 VGELIRELAAQGKAVIVITH 184
|
Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 205 |
| >gnl|CDD|131721 TIGR02673, FtsE, cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Score = 115 bits (290), Expect = 5e-29
Identities = 79/230 (34%), Positives = 111/230 (48%), Gaps = 33/230 (14%)
Query: 835 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTV 894
IE NVS YP + +++L + G L + G SG+GK+T++ L+ P G V
Sbjct: 2 IEFHNVSKAYP--GGVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQV 59
Query: 895 LIDGYDIRTLNLR---SLRRKIGLVQQEPALFST-TIYENIKYGNE----DASEIELMKA 946
I G D+ L R LRR+IG+V Q+ L T+YEN+ E EI+ +
Sbjct: 60 RIAGEDVNRLRGRQLPLLRRRIGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQ-RRV 118
Query: 947 TKAANAHGFISRM---PEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSA 1003
A G + PE QLSGG++QRVAIARAI+ +P +LL DE T
Sbjct: 119 GAALRQVGLEHKADAFPE-----------QLSGGEQQRVAIARAIVNSPPLLLADEPTGN 167
Query: 1004 LDTASENLIQEALDKLME----GRTTIMVAHRLSTIRN-ADKIAVLQQGK 1048
LD L + LD L G T I+ H LS + A ++ +L G+
Sbjct: 168 LDPD---LSERILDLLKRLNKRGTTVIVATHDLSLVDRVAHRVIILDDGR 214
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein [Cellular processes, Cell division]. Length = 214 |
| >gnl|CDD|172730 PRK14242, PRK14242, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 116 bits (293), Expect = 5e-29
Identities = 74/240 (30%), Positives = 124/240 (51%), Gaps = 21/240 (8%)
Query: 835 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGT- 893
+E R +SF Y D +++L+ + A++G SG GKST + + R D I G
Sbjct: 7 MEARGLSFFYG---DFQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGAR 63
Query: 894 ----VLIDGYDI--RTLNLRSLRRKIGLVQQEPALFSTTIYENIKYG-----NEDASEIE 942
+L+DG +I +++ LRR++G+V Q+P F +I+EN+ YG +D + +
Sbjct: 64 VEGEILLDGENIYDPHVDVVELRRRVGMVFQKPNPFPKSIFENVAYGLRVNGVKDKAYLA 123
Query: 943 LMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATS 1002
+A + + + + + + LSGGQ+QR+ IARA+ P +LL+DE S
Sbjct: 124 ERVERSLRHAALW-----DEVKDRLHESALGLSGGQQQRLCIARALAVEPEVLLMDEPAS 178
Query: 1003 ALDTASENLIQEALDKLMEGRTTIMVAHRL-STIRNADKIAVLQQGKVAEIGSHEQLLRK 1061
ALD + I+E + +L T I+V H + R +D A GK+ E+G EQ+ +
Sbjct: 179 ALDPIATQKIEELIHELKARYTIIIVTHNMQQAARVSDVTAFFYMGKLIEVGPTEQIFTR 238
|
Length = 253 |
| >gnl|CDD|131721 TIGR02673, FtsE, cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Score = 114 bits (288), Expect = 9e-29
Identities = 69/215 (32%), Positives = 108/215 (50%), Gaps = 25/215 (11%)
Query: 206 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFV-GPSGSGKSTIISMVQRLYEPTSGKI 264
IEF V AYP +++ + G+ F F+ GPSG+GK+T++ ++ P+ G++
Sbjct: 2 IEFHNVSKAYP-GGVAALHDVSLHIRKGE-FLFLTGPSGAGKTTLLKLLYGALTPSRGQV 59
Query: 265 LLDGHDLKSL---QLKWLREQMGLVSQEPALFAT-SIANNILLG------KEDASMDRVI 314
+ G D+ L QL LR ++G+V Q+ L ++ N+ L KE RV
Sbjct: 60 RIAGEDVNRLRGRQLPLLRRRIGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRRVG 119
Query: 315 EAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSAL 374
A + GL QLSGG++QR+AIARA++ +P +LL DE T L
Sbjct: 120 AALRQV-------GLEHKADAFPE----QLSGGEQQRVAIARAIVNSPPLLLADEPTGNL 168
Query: 375 DAESELIVQRALEKIMSNRTTIVVA-HRLSTVRDV 408
D + + L+++ TT++VA H LS V V
Sbjct: 169 DPDLSERILDLLKRLNKRGTTVIVATHDLSLVDRV 203
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein [Cellular processes, Cell division]. Length = 214 |
| >gnl|CDD|172732 PRK14244, PRK14244, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 115 bits (289), Expect = 1e-28
Identities = 67/218 (30%), Positives = 117/218 (53%), Gaps = 21/218 (9%)
Query: 222 VFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRL--YEP---TSGKILLDGHDLKS--L 274
+ ++N + + AF+GPSG GKST + R+ + P G++ +DG D+ S
Sbjct: 20 ILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDT 79
Query: 275 QLKWLREQMGLVSQEPALFATSIANNILLG-------KEDASMDRVIEAAKAANAHSFVE 327
+ LR ++G+V Q+P F SI +N+ G K +D ++E + + V
Sbjct: 80 NVVLLRAKVGMVFQKPNPFPKSIYDNVAYGPKLHGLAKNKKKLDEIVE-----KSLTSV- 133
Query: 328 GLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALE 387
GL + ++ + +LSGGQ+QR+ IARA+ P +LL+DE SALD + +++ ++
Sbjct: 134 GLWEELGDRLKDSAFELSGGQQQRLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQ 193
Query: 388 KIMSNRTTIVVAHRLSTVRDV-DTIMVLKNGQVVESGT 424
++ N T IVV H + + V D + ++G++VE T
Sbjct: 194 ELKKNFTIIVVTHSMKQAKKVSDRVAFFQSGRIVEYNT 231
|
Length = 251 |
| >gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 124 bits (313), Expect = 1e-28
Identities = 77/235 (32%), Positives = 122/235 (51%), Gaps = 18/235 (7%)
Query: 837 LRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLI 896
LR VSF+ ++ + +VG++GSGKST++ MR + G + +
Sbjct: 1326 LRGVSFR----------------IAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRV 1369
Query: 897 DGYDIRTLNLRSLRRKIGLVQQEPALFSTTIYENIKYGNEDASEIELMKATKAANAHGFI 956
+G +I LR LRR+ ++ Q+P LF T+ +N+ E AS E+ A + +
Sbjct: 1370 NGREIGAYGLRELRRQFSMIPQDPVLFDGTVRQNVDPFLE-ASSAEVWAALELVGLRERV 1428
Query: 957 SRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPS-ILLLDEATSALDTASENLIQEA 1015
+ EG S V + G S GQ+Q + +ARA+LK S +L+DEAT+ +D A + IQ
Sbjct: 1429 ASESEGIDSRVLEGGSNYSVGQRQLMCMARALLKKGSGFILMDEATANIDPALDRQIQAT 1488
Query: 1016 LDKLMEGRTTIMVAHRLSTIRNADKIAVLQQGKVAEIGSHEQLLRKENGIYKQLI 1070
+ T I +AHRL T+ DKI V+ G VAE+GS +L+ I+ ++
Sbjct: 1489 VMSAFSAYTVITIAHRLHTVAQYDKIIVMDHGAVAEMGSPRELVMNRQSIFHSMV 1543
|
Length = 1560 |
| >gnl|CDD|182692 PRK10744, pstB, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 115 bits (290), Expect = 2e-28
Identities = 68/191 (35%), Positives = 103/191 (53%), Gaps = 23/191 (12%)
Query: 225 NLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYE--P---TSGKILLDGHDL--KSLQLK 277
N+N + + AF+GPSG GKST++ R+YE P G+ILLDG ++ +
Sbjct: 31 NINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQDIA 90
Query: 278 WLREQMGLVSQEPALFATSIANNILLGKE------DASMDRVIEAA--KAANAHSFVEGL 329
LR ++G+V Q+P F SI +NI G A MD +E A KAA L
Sbjct: 91 LLRAKVGMVFQKPTPFPMSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAA--------L 142
Query: 330 PDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKI 389
+ + ++ + G LSGGQ+QR+ IAR + P++LLLDE SALD S ++ + ++
Sbjct: 143 WNEVKDKLHQSGYSLSGGQQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITEL 202
Query: 390 MSNRTTIVVAH 400
+ T ++V H
Sbjct: 203 KQDYTVVIVTH 213
|
Length = 260 |
| >gnl|CDD|213230 cd03263, ABC_subfamily_A, ATP-binding cassette domain of the lipid transporters, subfamily A | Back alignment and domain information |
|---|
Score = 113 bits (286), Expect = 2e-28
Identities = 54/231 (23%), Positives = 104/231 (45%), Gaps = 28/231 (12%)
Query: 206 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKIL 265
++ + Y ++L+ +V G+ F +G +G+GK+T + M+ PTSG
Sbjct: 1 LQIRNLTKTYKKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAY 60
Query: 266 LDGHDLKSLQLKWLREQMGLVSQEPALFAT-SIANNILL-----GKEDASMDRVIEAAKA 319
++G+ +++ K R+ +G Q ALF ++ ++ G + + +E
Sbjct: 61 INGYSIRT-DRKAARQSLGYCPQFDALFDELTVREHLRFYARLKGLPKSEIKEEVELL-- 117
Query: 320 ANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESE 379
GL D + LSGG K+++++A A++ P +LLLDE TS LD S
Sbjct: 118 --LRVL--GLTDKANKRAR----TLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPASR 169
Query: 380 LIVQRALEKIMSNRTTIVVAH------RLSTVRDVDTIMVLKNGQVVESGT 424
+ + ++ R+ I+ H L D I ++ +G++ G+
Sbjct: 170 RAIWDLILEVRKGRSIILTTHSMDEAEALC-----DRIAIMSDGKLRCIGS 215
|
The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. Length = 220 |
| >gnl|CDD|181906 PRK09493, glnQ, glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 114 bits (288), Expect = 2e-28
Identities = 75/235 (31%), Positives = 119/235 (50%), Gaps = 21/235 (8%)
Query: 206 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKIL 265
IEF V + P V N++ ++D G+ +GPSGSGKST++ + +L E TSG ++
Sbjct: 2 IEFKNVSKHFG--PTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLI 59
Query: 266 LDGHDLK--SLQLKWLREQMGLVSQEPALFATSIA-NNILLGKEDASMDRVIEAAKAANA 322
+DG + + + +R++ G+V Q+ LF A N++ G + A A
Sbjct: 60 VDGLKVNDPKVDERLIRQEAGMVFQQFYLFPHLTALENVMFGP------LRVRGASKEEA 113
Query: 323 HSFVEGLPD--GYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESE- 379
L G + ++LSGGQ+QR+AIARA+ PK++L DE TSALD E
Sbjct: 114 EKQARELLAKVGLAERAHHYPSELSGGQQQRVAIARALAVKPKLMLFDEPTSALDPELRH 173
Query: 380 --LIVQRAL-EKIMSNRTTIVVAHRLSTVRDVDT-IMVLKNGQVVESGTHVDLIS 430
L V + L E+ M T ++V H + V + ++ + G++ E G LI
Sbjct: 174 EVLKVMQDLAEEGM---TMVIVTHEIGFAEKVASRLIFIDKGRIAEDGDPQVLIK 225
|
Length = 240 |
| >gnl|CDD|130344 TIGR01277, thiQ, thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 113 bits (285), Expect = 2e-28
Identities = 77/232 (33%), Positives = 119/232 (51%), Gaps = 34/232 (14%)
Query: 835 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTV 894
+ L V ++Y P E +L V+ G +A++G SG+GKST+++L+ F +P SG++
Sbjct: 1 LALDKVRYEYEHLP----ME-FDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSI 55
Query: 895 LIDGYDIRTLNLRSLRRKIGLVQQEPALFS-TTIYENIKYGNEDA---SEIELMKATKAA 950
++ L +R + ++ QE LF+ T+ +NI G + + K AA
Sbjct: 56 KVNDQSH--TGLAPYQRPVSMLFQENNLFAHLTVRQNIGLGLHPGLKLNAEQQEKVVDAA 113
Query: 951 NAHG---FISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTA 1007
G ++ R+PE QLSGGQ+QRVA+AR +++ ILLLDE SALD
Sbjct: 114 QQVGIADYLDRLPE-----------QLSGGQRQRVALARCLVRPNPILLLDEPFSALDPL 162
Query: 1008 SENLIQEALDKLM-----EGRTTIMVAHRLS-TIRNADKIAVLQQGKVAEIG 1053
L +E L + RT +MV H LS A +IAV+ QGK+ +
Sbjct: 163 ---LREEMLALVKQLCSERQRTLLMVTHHLSDARAIASQIAVVSQGKIKVVS 211
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found [Transport and binding proteins, Other]. Length = 213 |
| >gnl|CDD|184199 PRK13639, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 115 bits (290), Expect = 2e-28
Identities = 79/250 (31%), Positives = 126/250 (50%), Gaps = 25/250 (10%)
Query: 835 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTV 894
+E R++ + YP + +N K G +A++G +G+GKST+ P SG V
Sbjct: 2 LETRDLKYSYP--DGTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEV 59
Query: 895 LIDGYDIRTLN--LRSLRRKIGLVQQEP--ALFSTTIYENIKYG------NEDASEIELM 944
LI G I+ L +R+ +G+V Q P LF+ T+ E++ +G +++ E +
Sbjct: 60 LIKGEPIKYDKKSLLEVRKTVGIVFQNPDDQLFAPTVEEDVAFGPLNLGLSKEEVEKRVK 119
Query: 945 KATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSAL 1004
+A KA GF ++ P LSGGQK+RVAIA + P I++LDE TS L
Sbjct: 120 EALKAVGMEGFENKPPH-----------HLSGGQKKRVAIAGILAMKPEIIVLDEPTSGL 168
Query: 1005 DTASENLIQEALDKL-MEGRTTIMVAHRLSTI-RNADKIAVLQQGKVAEIGSHEQLLRKE 1062
D + I + L L EG T I+ H + + ADK+ V+ GK+ + G+ +++
Sbjct: 169 DPMGASQIMKLLYDLNKEGITIIISTHDVDLVPVYADKVYVMSDGKIIKEGTPKEVFSDI 228
Query: 1063 NGIYKQLIRL 1072
I K +RL
Sbjct: 229 ETIRKANLRL 238
|
Length = 275 |
| >gnl|CDD|213264 cd03297, ABC_ModC_molybdenum_transporter, ATP-binding cassette domain of the molybdenum transport system | Back alignment and domain information |
|---|
Score = 113 bits (284), Expect = 3e-28
Identities = 68/210 (32%), Positives = 106/210 (50%), Gaps = 22/210 (10%)
Query: 225 NLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDL----KSLQLKWLR 280
++F ++ T G SG+GKST++ + L +P G I+L+G L K + L +
Sbjct: 16 KIDFDLNEEVT-GIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQ 74
Query: 281 EQMGLVSQEPALFA-TSIANNILLG-KEDASMDRVIEAAKAANAHSFVEGLPDGYQTQ-- 336
++GLV Q+ ALF ++ N+ G K + + I V+ L D
Sbjct: 75 RKIGLVFQQYALFPHLNVRENLAFGLKRKRNREDRI----------SVDELLDLLGLDHL 124
Query: 337 VGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMS--NRT 394
+ QLSGG+KQR+A+ARA+ P++LLLDE SALD L + L++I N
Sbjct: 125 LNRYPAQLSGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLPELKQIKKNLNIP 184
Query: 395 TIVVAHRLSTV-RDVDTIMVLKNGQVVESG 423
I V H LS D I+V+++G++ G
Sbjct: 185 VIFVTHDLSEAEYLADRIVVMEDGRLQYIG 214
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 214 |
| >gnl|CDD|213231 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Score = 113 bits (284), Expect = 3e-28
Identities = 61/223 (27%), Positives = 114/223 (51%), Gaps = 16/223 (7%)
Query: 835 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTV 894
++L N++ +Y + + ++L + G ++G +G+GK+T++ ++ P SGT+
Sbjct: 1 LQLENLTKRYGKK---RALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTI 56
Query: 895 LIDGYDIRTLNLRSLRRKIGLVQQEPALFST-TIYENIKYGNEDASEIELMKATKAANAH 953
IDG D+ + LRR+IG + QE ++ T+ E + Y I +K +
Sbjct: 57 RIDGQDVLK-QPQKLRRRIGYLPQEFGVYPNFTVREFLDY-------IAWLKGIPSKEVK 108
Query: 954 GFISRMPE--GYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENL 1011
+ + E + LSGG ++RV IA+A++ +PSIL++DE T+ LD
Sbjct: 109 ARVDEVLELVNLGDRAKKKIGSLSGGMRRRVGIAQALVGDPSILIVDEPTAGLDPEERIR 168
Query: 1012 IQEALDKLMEGRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIG 1053
+ L +L E R I+ H + + + +++AVL +GK+ G
Sbjct: 169 FRNLLSELGEDRIVILSTHIVEDVESLCNQVAVLNKGKLVFEG 211
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|213193 cd03226, ABC_cobalt_CbiO_domain2, Second domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 113 bits (284), Expect = 3e-28
Identities = 62/216 (28%), Positives = 110/216 (50%), Gaps = 21/216 (9%)
Query: 211 VCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHD 270
+ F+Y + + ++L+ + AG+ A G +G+GK+T+ ++ L + +SG ILL+G
Sbjct: 5 ISFSYK-KGTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKP 63
Query: 271 LKSLQLKWLREQMGLVSQEP--ALFATSIANNILLGKEDASMD--RVIEAAKAANAHSFV 326
+K+ K R+ +G V Q+ LF S+ +LLG ++ + K + ++
Sbjct: 64 IKA---KERRKSIGYVMQDVDYQLFTDSVREELLLGLKELDAGNEQAETVLKDLDLYALK 120
Query: 327 EGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRAL 386
E P LSGGQKQR+AIA A+L +L+ DE TS LD ++ V +
Sbjct: 121 ERHP-----------LSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGELI 169
Query: 387 EKIMSNRTTIVVA-HRLSTVRDV-DTIMVLKNGQVV 420
++ + ++V H + V D +++L NG +V
Sbjct: 170 RELAAQGKAVIVITHDYEFLAKVCDRVLLLANGAIV 205
|
Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 205 |
| >gnl|CDD|181906 PRK09493, glnQ, glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 113 bits (285), Expect = 3e-28
Identities = 73/237 (30%), Positives = 124/237 (52%), Gaps = 26/237 (10%)
Query: 835 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTV 894
IE +NVS + + N++L + G + ++G SGSGKST++ + + + SG +
Sbjct: 2 IEFKNVSKHFG---PTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDL 58
Query: 895 LIDGYDIR--TLNLRSLRRKIGLVQQEPALF-STTIYENIKYGNEDASEIELMKATKAA- 950
++DG + ++ R +R++ G+V Q+ LF T EN+ +G + + A+K
Sbjct: 59 IVDGLKVNDPKVDERLIRQEAGMVFQQFYLFPHLTALENVMFG-----PLRVRGASKEEA 113
Query: 951 --NAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTAS 1008
A ++++ G +LSGGQ+QRVAIARA+ P ++L DE TSALD
Sbjct: 114 EKQARELLAKV--GLAERAHHYPSELSGGQQQRVAIARALAVKPKLMLFDEPTSALDP-- 169
Query: 1009 ENLIQEALDKLM-----EGRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGSHEQLL 1059
L E L K+M EG T ++V H + A ++ + +G++AE G + L+
Sbjct: 170 -ELRHEVL-KVMQDLAEEGMTMVIVTHEIGFAEKVASRLIFIDKGRIAEDGDPQVLI 224
|
Length = 240 |
| >gnl|CDD|226970 COG4619, COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 113 bits (284), Expect = 4e-28
Identities = 65/169 (38%), Positives = 100/169 (59%), Gaps = 10/169 (5%)
Query: 222 VFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLRE 281
+ N++ SV AG+ A GPSG GKST++ +V L PTSG +L +G D+ +L+ + R+
Sbjct: 18 ILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEAYRQ 77
Query: 282 QMGLVSQEPALFATSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGG 341
Q+ +Q PALF ++ +N++ + R AA F LPD + + +
Sbjct: 78 QVSYCAQTPALFGDTVEDNLIFPWQ-IRNRRPDRAAALDLLARF--ALPD---SILTKNI 131
Query: 342 TQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIM 390
T+LSGG+KQRIA+ R + PKILLLDE TSALD + +R +E+++
Sbjct: 132 TELSGGEKQRIALIRNLQFMPKILLLDEITSALDESN----KRNIEEMI 176
|
Length = 223 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 119 bits (300), Expect = 6e-28
Identities = 72/230 (31%), Positives = 115/230 (50%), Gaps = 28/230 (12%)
Query: 835 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTV 894
+ELR +S + + + ++L V G A++G++G+GKST++ ++ Y P SG +
Sbjct: 9 LELRGISKSFG---GVKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEI 65
Query: 895 LIDGYDIRTLNLR-SLRRKIGLVQQEPALFST-TIYENIKYGNEDASEI------ELMKA 946
LIDG + + R +L I V QE +L ++ ENI G E + +
Sbjct: 66 LIDGKPVAFSSPRDALAAGIATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRR 125
Query: 947 TKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDT 1006
+ A + P+ + VGD LS Q+Q V IARA+ + +L+LDE T+AL T
Sbjct: 126 ARELLARLGLDIDPD---TLVGD----LSIAQRQMVEIARALSFDARVLILDEPTAAL-T 177
Query: 1007 ASENLIQEALDKLM-----EGRTTIMVAHRLSTI-RNADKIAVLQQGKVA 1050
E E L L+ +G I ++HRL + AD+I VL+ G+V
Sbjct: 178 VKE---TERLFDLIRRLKAQGVAIIYISHRLDEVFEIADRITVLRDGRVV 224
|
Length = 500 |
| >gnl|CDD|213265 cd03298, ABC_ThiQ_thiamine_transporter, ATP-binding cassette domain of the thiamine transport system | Back alignment and domain information |
|---|
Score = 112 bits (281), Expect = 6e-28
Identities = 71/231 (30%), Positives = 112/231 (48%), Gaps = 32/231 (13%)
Query: 835 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTV 894
+ L + F Y +P + +L + G A+VG SGSGKST+++L+ F P SG V
Sbjct: 1 VRLDKIRFSYGEQP-----MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRV 55
Query: 895 LIDGYDIRTLNLRSLRRKIGLVQQEPALFS-TTIYENIKYG--------NEDASEIELMK 945
LI+G D+ R + ++ QE LF+ T+ +N+ G ED IE
Sbjct: 56 LINGVDVTAAPPA--DRPVSMLFQENNLFAHLTVEQNVGLGLSPGLKLTAEDRQAIE--V 111
Query: 946 ATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALD 1005
A G R+P +LSGG++QRVA+AR ++++ +LLLDE +ALD
Sbjct: 112 ALARVGLAGLEKRLPG-----------ELSGGERQRVALARVLVRDKPVLLLDEPFAALD 160
Query: 1006 TASENLIQEALDKL--MEGRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIG 1053
A + + + L T +MV H+ + A ++ L G++A G
Sbjct: 161 PALRAEMLDLVLDLHAETKMTVLMVTHQPEDAKRLAQRVVFLDNGRIAAQG 211
|
Part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|226927 COG4555, NatA, ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 113 bits (284), Expect = 6e-28
Identities = 68/236 (28%), Positives = 119/236 (50%), Gaps = 19/236 (8%)
Query: 835 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTV 894
+E+ +++ Y + +++ + G ++G++G+GK+T++ ++ P SG V
Sbjct: 2 LEVTDLTKSYG--SKVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKV 59
Query: 895 LIDGYDIRTLNLRSLRRKIGLVQQEPALFS-TTIYENIKYGNE--DASEIELMKATKAAN 951
IDG D + +RRKIG++ E L++ T EN+KY S E+
Sbjct: 60 TIDGVDTVR-DPSFVRRKIGVLFGERGLYARLTARENLKYFARLNGLSRKEIKAR----- 113
Query: 952 AHGFISRMPE--GYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASE 1009
I+ + + ++ R + S G KQ+VAIARA++ +PSIL+LDE TS LD +
Sbjct: 114 ----IAELSKRLQLLEYLDRRVGEFSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRTR 169
Query: 1010 NLIQEALDKLM-EGRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGSHEQLLRKEN 1063
+ + +L EGR I +H + + D++ VL +G+V GS E L +
Sbjct: 170 RKFHDFIKQLKNEGRAVIFSSHIMQEVEALCDRVIVLHKGEVVLEGSIEALDARTV 225
|
Length = 245 |
| >gnl|CDD|234152 TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 116 bits (292), Expect = 7e-28
Identities = 75/224 (33%), Positives = 118/224 (52%), Gaps = 31/224 (13%)
Query: 851 TIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLR 910
T ++++L V G + ++G SG GK+T++ ++ +GT+ G DI L +
Sbjct: 18 TALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDIT--RLPPQK 75
Query: 911 RKIGLVQQEPALF-STTIYENIKYGNEDASEIELMKATKAANAHGFISRMPEGYQSHVGD 969
R G+V Q ALF + T+ +NI YG ++ + A ++ + + VG
Sbjct: 76 RDYGIVFQSYALFPNLTVADNIAYGLKN-------RGMGRAEVAERVAELLD----LVGL 124
Query: 970 RGV------QLSGGQKQRVAIARAILKNPSILLLDEATSALDT-ASENLIQEALDKLME- 1021
G QLSGGQ+QRVA+ARA+ +P +LLLDE SALD E+L E + +L
Sbjct: 125 PGSERKYPGQLSGGQQQRVALARALATSPGLLLLDEPLSALDARVREHLRTE-IRQLQRR 183
Query: 1022 -GRTTIMVAH----RLSTIRNADKIAVLQQGKVAEIGSHEQLLR 1060
G TTIMV H LS AD+I V+ G + ++G+ +++ R
Sbjct: 184 LGVTTIMVTHDQEEALSM---ADRIVVMNHGVIEQVGTPQEIYR 224
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely [Transport and binding proteins, Amino acids, peptides and amines]. Length = 353 |
| >gnl|CDD|215650 pfam00005, ABC_tran, ABC transporter | Back alignment and domain information |
|---|
Score = 108 bits (273), Expect = 7e-28
Identities = 52/129 (40%), Positives = 76/129 (58%), Gaps = 13/129 (10%)
Query: 247 STIISMVQRLYEPTSGKILLDGHDLKSL-QLKWLREQMGLVSQEPALFAT-SIANNILLG 304
ST++ ++ L +PTSG ILLDG D L K LR+++G+V Q+P LF ++ N+ G
Sbjct: 1 STLLKLITGLLQPTSGTILLDGEDGTGLSSRKLLRKRIGVVFQDPQLFPELTVRENLFFG 60
Query: 305 -KEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPK 363
++ + R EA + F++ P LSGGQKQR+AIARA+L+ PK
Sbjct: 61 LRDKEADARAEEALERVGLPDFLDREP----------VGTLSGGQKQRVAIARALLKKPK 110
Query: 364 ILLLDEATS 372
+LLLDE T+
Sbjct: 111 LLLLDEPTA 119
|
ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide as in human CFTR, or belong in different polypeptide chains. Length = 119 |
| >gnl|CDD|182221 PRK10070, PRK10070, glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 117 bits (293), Expect = 7e-28
Identities = 79/214 (36%), Positives = 123/214 (57%), Gaps = 13/214 (6%)
Query: 854 ENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLN---LRSLR 910
++ +L + G ++G SGSGKST++ L+ R +P G VLIDG DI ++ LR +R
Sbjct: 45 KDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVR 104
Query: 911 RK-IGLVQQEPALFS-TTIYENIKYGNEDASEIELMKATKAANAHGFISRMPEGYQSHVG 968
RK I +V Q AL T+ +N +G E A + KA +A + G +++
Sbjct: 105 RKKIAMVFQSFALMPHMTVLDNTAFGMELAGINAEERREKALDALRQV-----GLENYAH 159
Query: 969 DRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLM--EGRTTI 1026
+LSGG +QRV +ARA+ NP ILL+DEA SALD +Q+ L KL RT +
Sbjct: 160 SYPDELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQRTIV 219
Query: 1027 MVAHRL-STIRNADKIAVLQQGKVAEIGSHEQLL 1059
++H L +R D+IA++Q G+V ++G+ +++L
Sbjct: 220 FISHDLDEAMRIGDRIAIMQNGEVVQVGTPDEIL 253
|
Length = 400 |
| >gnl|CDD|184587 PRK14241, PRK14241, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 113 bits (284), Expect = 9e-28
Identities = 67/216 (31%), Positives = 117/216 (54%), Gaps = 24/216 (11%)
Query: 202 LAGQIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPT- 260
+A +I+ ++ Y S E++N +++ AF+GPSG GKST++ + R++E
Sbjct: 1 MAKRIDVKDLNIYYGS--FHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIP 58
Query: 261 ----SGKILLDGHDL--KSLQLKWLREQMGLVSQEPALFAT-SIANNILLG------KED 307
G++LLDG DL + +R +G+V Q P F T SI +N++ G +
Sbjct: 59 GARVEGEVLLDGEDLYGPGVDPVAVRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNK 118
Query: 308 ASMDRVIEAA-KAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILL 366
+D ++E + + AN L + + ++ + G LSGGQ+QR+ IARA+ P +LL
Sbjct: 119 KDLDELVEKSLRGAN-------LWNEVKDRLDKPGGGLSGGQQQRLCIARAIAVEPDVLL 171
Query: 367 LDEATSALDAESELIVQRALEKIMSNRTTIVVAHRL 402
+DE SALD S L ++ + ++ + T ++V H +
Sbjct: 172 MDEPCSALDPISTLAIEDLINELKQDYTIVIVTHNM 207
|
Length = 258 |
| >gnl|CDD|172741 PRK14253, PRK14253, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 113 bits (283), Expect = 9e-28
Identities = 70/218 (32%), Positives = 115/218 (52%), Gaps = 15/218 (6%)
Query: 853 FENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYD-----PISGTVLIDGYDI-RTLNL 906
+++NL + A + A++G SG GKST++ + R D I+G + +DG DI +++
Sbjct: 19 LKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDV 78
Query: 907 RSLRRKIGLVQQEPALFSTTIYENIKYGNEDASEIELMKATKAANAHGFISRMPEGYQSH 966
LR K+G+V Q+P F +IYEN+ YG + +K K + S
Sbjct: 79 ADLRIKVGMVFQKPNPFPMSIYENVAYG----LRAQGIKDKKVLDEVVERSLRGAALWDE 134
Query: 967 VGDR----GVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLMEG 1022
V DR LSGGQ+QR+ IAR I P ++L+DE TSALD + + I+E +++L +
Sbjct: 135 VKDRLKSHAFGLSGGQQQRLCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKKN 194
Query: 1023 RTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGSHEQLL 1059
T ++V H + R +D+ A G++ E + +
Sbjct: 195 YTIVIVTHSMQQARRISDRTAFFLMGELVEHDDTQVIF 232
|
Length = 249 |
| >gnl|CDD|188394 TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Score = 112 bits (282), Expect = 9e-28
Identities = 73/233 (31%), Positives = 125/233 (53%), Gaps = 12/233 (5%)
Query: 835 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTV 894
+E+ +SF+Y R ++++ V GR +A++G +G+GKST+ SL+ R Y G +
Sbjct: 2 LEVAGLSFRYGAR---RALDDVSFTVRPGRFVALLGPNGAGKSTLFSLLTRLYVAQEGQI 58
Query: 895 LIDGYDIRTLNLRSLRRKIGLVQQEPAL-FSTTIYENIKYGNEDASEIELMKATKAANAH 953
+ G+D+R +L R +G+V Q+P L ++ +N++Y A+ L +A A
Sbjct: 59 SVAGHDLRRAPRAALAR-LGVVFQQPTLDLDLSVRQNLRY---HAALHGLSRAEARARIA 114
Query: 954 GFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQ 1013
++R+ G D+ +L+GG ++RV IARA+L P++LLLDE T LD AS I
Sbjct: 115 ELLARL--GLAERADDKVRELNGGHRRRVEIARALLHRPALLLLDEPTVGLDPASRAAIT 172
Query: 1014 EALDKLM--EGRTTIMVAHRLSTIRNADKIAVLQQGKVAEIGSHEQLLRKENG 1064
+ L +G + + H + I D++ VL +G+V G+ +L G
Sbjct: 173 AHVRALARDQGLSVLWATHLVDEIEADDRLVVLHRGRVLADGAAAELRGATGG 225
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 236 |
| >gnl|CDD|237651 PRK14266, PRK14266, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 112 bits (282), Expect = 1e-27
Identities = 72/220 (32%), Positives = 116/220 (52%), Gaps = 24/220 (10%)
Query: 220 HMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYE--PT---SGKILLDGHDL--K 272
+ +N+N + A +GPSG GKST I + R+ + P G I LDG D+
Sbjct: 16 AHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDP 75
Query: 273 SLQLKWLREQMGLVSQEPALFATSIANNILLG-------KEDASMDRVIEAAKAANAHSF 325
++ + LR+++G+V Q+P F SI +N+ G ED +RV E+ KAA
Sbjct: 76 AVDVVELRKKVGMVFQKPNPFPKSIFDNVAYGLRIHGEDDEDFIEERVEESLKAA----- 130
Query: 326 VEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRA 385
L D + ++ + LSGGQ+QR+ IAR + +P+++L+DE SALD S ++
Sbjct: 131 --ALWDEVKDKLDKSALGLSGGQQQRLCIARTIAVSPEVILMDEPCSALDPISTTKIEDL 188
Query: 386 LEKIMSNRTTIVVAHRLSTVRDVD--TIMVLKNGQVVESG 423
+ K+ + T ++V H + V T L NG+++ESG
Sbjct: 189 IHKLKEDYTIVIVTHNMQQATRVSKYTSFFL-NGEIIESG 227
|
Length = 250 |
| >gnl|CDD|130234 TIGR01166, cbiO, cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Score = 110 bits (278), Expect = 1e-27
Identities = 66/197 (33%), Positives = 99/197 (50%), Gaps = 26/197 (13%)
Query: 215 YPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDG----HD 270
YP P V + LNF+ + G+ A +G +G+GKST++ + L P SG +L+DG +
Sbjct: 1 YPGGPE-VLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYS 59
Query: 271 LKSLQLKWLREQMGLVSQEP--ALFATSIANNILLG------KEDASMDRVIEAAKAANA 322
K L L+ R+++GLV Q+P LFA + ++ G E RV EA A A
Sbjct: 60 RKGL-LER-RQRVGLVFQDPDDQLFAADVDQDVAFGPLNLGLSEAEVERRVREALTAVGA 117
Query: 323 HSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIV 382
E LSGG+K+R+AIA AV P +LLLDE T+ LD +
Sbjct: 118 SGLRERPT-----------HCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGREQM 166
Query: 383 QRALEKIMSNRTTIVVA 399
L ++ + T+V++
Sbjct: 167 LAILRRLRAEGMTVVIS 183
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux [Transport and binding proteins, Cations and iron carrying compounds]. Length = 190 |
| >gnl|CDD|184207 PRK13648, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 113 bits (284), Expect = 1e-27
Identities = 68/238 (28%), Positives = 118/238 (49%), Gaps = 16/238 (6%)
Query: 835 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTV 894
I +NVSF+Y T+ ++++ + G+ ++VG +GSGKST+ L++ SG +
Sbjct: 8 IVFKNVSFQYQSDASFTL-KDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEI 66
Query: 895 LIDGYDIRTLNLRSLRRKIGLVQQEP--ALFSTTIYENIKYGNEDAS-EIELM--KATKA 949
+ I N LR+ IG+V Q P + + ++ +G E+ + + M + ++A
Sbjct: 67 FYNNQAITDDNFEKLRKHIGIVFQNPDNQFVGSIVKYDVAFGLENHAVPYDEMHRRVSEA 126
Query: 950 ANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASE 1009
+ R + LSGGQKQRVAIA + NPS+++LDEATS LD +
Sbjct: 127 LKQVDMLERADYEPNA--------LSGGQKQRVAIAGVLALNPSVIILDEATSMLDPDAR 178
Query: 1010 NLIQEALDKLMEGR--TTIMVAHRLSTIRNADKIAVLQQGKVAEIGSHEQLLRKENGI 1065
+ + + K+ T I + H LS AD + V+ +G V + G+ ++ +
Sbjct: 179 QNLLDLVRKVKSEHNITIISITHDLSEAMEADHVIVMNKGTVYKEGTPTEIFDHAEEL 236
|
Length = 269 |
| >gnl|CDD|184207 PRK13648, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 113 bits (284), Expect = 1e-27
Identities = 74/239 (30%), Positives = 118/239 (49%), Gaps = 25/239 (10%)
Query: 206 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKIL 265
I F V F Y S ++++F++ G+ + VG +GSGKSTI ++ + + SG+I
Sbjct: 8 IVFKNVSFQYQSDASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIF 67
Query: 266 LDGHDLKSLQLKWLREQMGLVSQEPA-LFATSI-ANNILLGKEDASM------DRVIEAA 317
+ + + LR+ +G+V Q P F SI ++ G E+ ++ RV EA
Sbjct: 68 YNNQAITDDNFEKLRKHIGIVFQNPDNQFVGSIVKYDVAFGLENHAVPYDEMHRRVSEAL 127
Query: 318 KAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALD-- 375
K + + P+ LSGGQKQR+AIA + NP +++LDEATS LD
Sbjct: 128 KQVDMLERADYEPNA-----------LSGGQKQRVAIAGVLALNPSVIILDEATSMLDPD 176
Query: 376 AESELI--VQRALEKIMSNRTTIVVAHRLSTVRDVDTIMVLKNGQVVESGTHVDLISKG 432
A L+ V++ K N T I + H LS + D ++V+ G V + GT ++
Sbjct: 177 ARQNLLDLVRKV--KSEHNITIISITHDLSEAMEADHVIVMNKGTVYKEGTPTEIFDHA 233
|
Length = 269 |
| >gnl|CDD|172747 PRK14259, PRK14259, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 112 bits (283), Expect = 1e-27
Identities = 73/229 (31%), Positives = 110/229 (48%), Gaps = 39/229 (17%)
Query: 835 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPI---- 890
I L+NV+ Y +N+ + G+ A++G SG GKSTV+ + R D I
Sbjct: 14 ISLQNVTISYG---TFEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCS 70
Query: 891 -SGTVLIDGYDIRTLNLR--SLRRKIGLVQQEPALFSTTIYENIKYGNEDASEIELMKAT 947
G VL DG D+ + +RR+IG+V Q+P F +IYENI +G
Sbjct: 71 LKGRVLFDGTDLYDPRVDPVEVRRRIGMVFQQPNPFPKSIYENIAFG------------- 117
Query: 948 KAANAHGFISRMPEGYQS-------------HVGDRGVQLSGGQKQRVAIARAILKNPSI 994
A +G+ M E + + + G LSGGQ+QR+ IAR I P +
Sbjct: 118 --ARINGYTGDMDELVERSLRKAAVWDECKDKLNESGYSLSGGQQQRLCIARTIAIEPEV 175
Query: 995 LLLDEATSALDTASENLIQEALDKLMEGRTTIMVAHRL-STIRNADKIA 1042
+L+DE SALD S I+E + +L + T ++V H + +R +D A
Sbjct: 176 ILMDEPCSALDPISTLKIEETMHELKKNFTIVIVTHNMQQAVRVSDMTA 224
|
Length = 269 |
| >gnl|CDD|184202 PRK13642, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 113 bits (283), Expect = 2e-27
Identities = 73/235 (31%), Positives = 122/235 (51%), Gaps = 21/235 (8%)
Query: 835 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTV 894
+E+ N+ FKY D+ ++ ++ G ++++GQ+GSGKST L+ ++ G V
Sbjct: 5 LEVENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKV 64
Query: 895 LIDGYDIRTLNLRSLRRKIGLVQQEP--ALFSTTIYENIKYG--NEDASEIELMK----A 946
IDG + N+ +LRRKIG+V Q P T+ +++ +G N+ E++K A
Sbjct: 65 KIDGELLTAENVWNLRRKIGMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKRVDEA 124
Query: 947 TKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDT 1006
A N F +R P +LSGGQKQRVA+A I P I++LDE+TS LD
Sbjct: 125 LLAVNMLDFKTREP-----------ARLSGGQKQRVAVAGIIALRPEIIILDESTSMLDP 173
Query: 1007 ASENLIQEALDKLMEGR--TTIMVAHRLSTIRNADKIAVLQQGKVAEIGSHEQLL 1059
I + ++ E T + + H L ++D+I V++ G++ + + +L
Sbjct: 174 TGRQEIMRVIHEIKEKYQLTVLSITHDLDEAASSDRILVMKAGEIIKEAAPSELF 228
|
Length = 277 |
| >gnl|CDD|237645 PRK14235, PRK14235, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 112 bits (282), Expect = 2e-27
Identities = 77/255 (30%), Positives = 128/255 (50%), Gaps = 34/255 (13%)
Query: 824 ASKEVTEIKGNIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLV 883
A K+ T + + R+VS Y + + +++L + A +G SG GKST + +
Sbjct: 9 ADKKATATEIKMRARDVSVFYGEKQAL---FDVDLDIPEKTVTAFIGPSGCGKSTFLRCL 65
Query: 884 MRFYDPI-----SGTVLIDGYDI--RTLNLRSLRRKIGLVQQEPALFSTTIYENIKYG-- 934
R D I +G + +DG DI L++ LR ++G+V Q+P F +IYEN+ YG
Sbjct: 66 NRMNDTIDGCRVTGKITLDGEDIYDPRLDVVELRARVGMVFQKPNPFPKSIYENVAYGPR 125
Query: 935 ----NEDASEIE--LMKATKAANAHGFISRMPEGYQSHVGDR----GVQLSGGQKQRVAI 984
+E++ + + + A G V DR G LSGGQ+QR+ I
Sbjct: 126 IHGLARSKAELDEIVETSLRKA-----------GLWEEVKDRLHEPGTGLSGGQQQRLCI 174
Query: 985 ARAILKNPSILLLDEATSALDTASENLIQEALDKLMEGRTTIMVAHRLS-TIRNADKIAV 1043
ARAI +P ++L+DE SALD + ++E +D+L + T ++V H + R + + A
Sbjct: 175 ARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQNYTIVIVTHSMQQAARVSQRTAF 234
Query: 1044 LQQGKVAEIGSHEQL 1058
G + E+G E++
Sbjct: 235 FHLGNLVEVGDTEKM 249
|
Length = 267 |
| >gnl|CDD|213256 cd03289, ABCC_CFTR2, ATP-binding cassette domain 2 of CFTR,subfamily C | Back alignment and domain information |
|---|
Score = 112 bits (282), Expect = 2e-27
Identities = 67/238 (28%), Positives = 125/238 (52%), Gaps = 4/238 (1%)
Query: 833 GNIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISG 892
G + +++++ KY + EN++ +S G+ + ++G++GSGKST++S +R + G
Sbjct: 1 GQMTVKDLTAKY-TEGGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEG 58
Query: 893 TVLIDGYDIRTLNLRSLRRKIGLVQQEPALFSTTIYENIKYGNEDASEIELMKATKAANA 952
+ IDG ++ L+ R+ G++ Q+ +FS T +N+ S+ E+ K +
Sbjct: 59 DIQIDGVSWNSVPLQKWRKAFGVIPQKVFIFSGTFRKNLD-PYGKWSDEEIWKVAEEVGL 117
Query: 953 HGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLI 1012
I + P + D G LS G KQ + +AR++L ILLLDE ++ LD + +I
Sbjct: 118 KSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQVI 177
Query: 1013 QEALDKLMEGRTTIMVAHRLSTIRNADKIAVLQQGKVAEIGSHEQLLRKENGIYKQLI 1070
++ L + T I+ HR+ + + V+++ KV + S ++LL E +KQ I
Sbjct: 178 RKTLKQAFADCTVILSEHRIEAMLECQRFLVIEENKVRQYDSIQKLL-NEKSHFKQAI 234
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. Length = 275 |
| >gnl|CDD|213257 cd03290, ABCC_SUR1_N, ATP-binding cassette domain of the sulfonylurea receptor, subfamily C | Back alignment and domain information |
|---|
Score = 110 bits (277), Expect = 2e-27
Identities = 63/208 (30%), Positives = 111/208 (53%), Gaps = 10/208 (4%)
Query: 848 PDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTV-----LIDGYDIR 902
+ N+N+++ G+ +VGQ G GKS+++ ++ + G V
Sbjct: 12 SGLATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFE 71
Query: 903 TLNLRSLRRKIGLVQQEPALFSTTIYENIKYGNEDASEIELMKATKAANAHGFISRMPEG 962
R+ R + Q+P L + T+ ENI +G+ + T A + I +P G
Sbjct: 72 ATRSRN-RYSVAYAAQKPWLLNATVEENITFGSPFNKQ-RYKAVTDACSLQPDIDLLPFG 129
Query: 963 YQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDT-ASENLIQEALDKLM- 1020
Q+ +G+RG+ LSGGQ+QR+ +ARA+ +N +I+ LD+ SALD S++L+QE + K +
Sbjct: 130 DQTEIGERGINLSGGQRQRICVARALYQNTNIVFLDDPFSALDIHLSDHLMQEGILKFLQ 189
Query: 1021 -EGRTTIMVAHRLSTIRNADKIAVLQQG 1047
+ RT ++V H+L + +AD I ++ G
Sbjct: 190 DDKRTLVLVTHKLQYLPHADWIIAMKDG 217
|
The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 218 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 117 bits (295), Expect = 3e-27
Identities = 70/222 (31%), Positives = 113/222 (50%), Gaps = 29/222 (13%)
Query: 225 NLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLRE--Q 282
++ +V G+ A +G +G+GKST++ ++ +Y P SG+IL+DG K + R+
Sbjct: 26 GVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDG---KPVAFSSPRDALA 82
Query: 283 MG--LVSQEPALFAT-SIANNILLGKEDAS----MDRVIEAAKAANAHSFVEGLPDGYQT 335
G V QE +L S+A NI LG+E +DR +A + + GL T
Sbjct: 83 AGIATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARL-GLDIDPDT 141
Query: 336 QVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALD-AESELIVQRALEKIM---- 390
VG+ LS Q+Q + IARA+ + ++L+LDE T+AL E+E L ++
Sbjct: 142 LVGD----LSIAQRQMVEIARALSFDARVLILDEPTAALTVKETE-----RLFDLIRRLK 192
Query: 391 -SNRTTIVVAHRLSTVRDV-DTIMVLKNGQVVESGTHVDLIS 430
I ++HRL V ++ D I VL++G+VV + S
Sbjct: 193 AQGVAIIYISHRLDEVFEIADRITVLRDGRVVGTRPTAAETS 234
|
Length = 500 |
| >gnl|CDD|184585 PRK14239, PRK14239, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 111 bits (279), Expect = 3e-27
Identities = 68/212 (32%), Positives = 109/212 (51%), Gaps = 12/212 (5%)
Query: 867 AVVGQSGSGKSTVISLVMRFYD-----PISGTVLIDGYDI--RTLNLRSLRRKIGLVQQE 919
A++G SGSGKST++ + R D I+G+++ +G++I + LR++IG+V Q+
Sbjct: 35 ALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDTVDLRKEIGMVFQQ 94
Query: 920 PALFSTTIYENIKYGNEDASEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQK 979
P F +IYEN+ YG + +A + + + + + D + LSGGQ+
Sbjct: 95 PNPFPMSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEVKDRLHDSALGLSGGQQ 154
Query: 980 QRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLMEGRTTIMVAHRLSTI-RNA 1038
QRV IAR + +P I+LLDE TSALD S I+E L L + T ++V + R +
Sbjct: 155 QRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKDDYTMLLVTRSMQQASRIS 214
Query: 1039 DKIAVLQQGKVAEIGSHEQLL----RKENGIY 1066
D+ G + E +Q+ KE Y
Sbjct: 215 DRTGFFLDGDLIEYNDTKQMFMNPKHKETEDY 246
|
Length = 252 |
| >gnl|CDD|184597 PRK14270, PRK14270, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 111 bits (279), Expect = 3e-27
Identities = 72/245 (29%), Positives = 128/245 (52%), Gaps = 27/245 (11%)
Query: 831 IKGNIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYD-- 888
+K +E +N++ Y + + ++NL + + A++G SG GKST + + R D
Sbjct: 1 MKIKMESKNLNLWYGEKQAL---NDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLI 57
Query: 889 ---PISGTVLIDGYDI--RTLNLRSLRRKIGLVQQEPALFSTTIYENIKYGN-----EDA 938
I G VL+DG +I + +++ LR+++G+V Q+P F +IY+N+ YG +D
Sbjct: 58 SNVKIEGEVLLDGKNIYDKDVDVVELRKRVGMVFQKPNPFPMSIYDNVAYGPRIHGIKDK 117
Query: 939 SEIELM---KATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSIL 995
E++ + KAA + + + + ++LSGGQ+QR+ IAR I P ++
Sbjct: 118 KELDKIVEWALKKAA--------LWDEVKDDLKKSALKLSGGQQQRLCIARTIAVKPDVI 169
Query: 996 LLDEATSALDTASENLIQEALDKLMEGRTTIMVAHRLSTI-RNADKIAVLQQGKVAEIGS 1054
L+DE TSALD S I++ + +L + T ++V H + R +D A G + E
Sbjct: 170 LMDEPTSALDPISTLKIEDLMVELKKEYTIVIVTHNMQQASRVSDYTAFFLMGDLIEFNK 229
Query: 1055 HEQLL 1059
E++
Sbjct: 230 TEKIF 234
|
Length = 251 |
| >gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 116 bits (293), Expect = 4e-27
Identities = 70/229 (30%), Positives = 121/229 (52%), Gaps = 27/229 (11%)
Query: 835 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTV 894
+E+R ++ ++P + ++++L V G A++G++G+GKST++ ++ Y P SG +
Sbjct: 5 LEMRGITKRFP---GVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEI 61
Query: 895 LIDGYDIRTLNLR-SLRRKIGLVQQEPALFST-TIYENIKYGNEDASEIELMKATKAANA 952
+DG ++R + R ++R IG+V Q L T T+ ENI G E + + + A
Sbjct: 62 RVDGKEVRIKSPRDAIRLGIGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARARI 121
Query: 953 HGFISR--MPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASEN 1010
R +P + V D LS G++QRV I +A+ + +L+LDE T+ L T E
Sbjct: 122 KELSERYGLPVDPDAKVAD----LSVGEQQRVEILKALYRGARLLILDEPTAVL-TPQE- 175
Query: 1011 LIQEALDKLM--------EGRTTIMVAHRLSTIRN-ADKIAVLQQGKVA 1050
D+L EG+T I + H+L + AD++ VL++GKV
Sbjct: 176 -----ADELFEILRRLAAEGKTIIFITHKLKEVMAIADRVTVLRRGKVV 219
|
Length = 501 |
| >gnl|CDD|215650 pfam00005, ABC_tran, ABC transporter | Back alignment and domain information |
|---|
Score = 106 bits (266), Expect = 5e-27
Identities = 51/129 (39%), Positives = 75/129 (58%), Gaps = 13/129 (10%)
Query: 877 STVISLVMRFYDPISGTVLIDGYDIRTLN-LRSLRRKIGLVQQEPALF-STTIYENIKYG 934
ST++ L+ P SGT+L+DG D L+ + LR++IG+V Q+P LF T+ EN+ +G
Sbjct: 1 STLLKLITGLLQPTSGTILLDGEDGTGLSSRKLLRKRIGVVFQDPQLFPELTVRENLFFG 60
Query: 935 -NEDASEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPS 993
+ ++ +A + F+ R + LSGGQKQRVAIARA+LK P
Sbjct: 61 LRDKEADARAEEALERVGLPDFLDR----------EPVGTLSGGQKQRVAIARALLKKPK 110
Query: 994 ILLLDEATS 1002
+LLLDE T+
Sbjct: 111 LLLLDEPTA 119
|
ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide as in human CFTR, or belong in different polypeptide chains. Length = 119 |
| >gnl|CDD|213256 cd03289, ABCC_CFTR2, ATP-binding cassette domain 2 of CFTR,subfamily C | Back alignment and domain information |
|---|
Score = 111 bits (279), Expect = 5e-27
Identities = 64/216 (29%), Positives = 115/216 (53%), Gaps = 2/216 (0%)
Query: 204 GQIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGK 263
GQ+ ++ Y + V EN++FS+ G+ +G +GSGKST++S RL T G
Sbjct: 1 GQMTVKDLTAKYTEGGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGD 59
Query: 264 ILLDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNILLGKEDASMDRVIEAAKAANAH 323
I +DG S+ L+ R+ G++ Q+ +F+ + N L S + + + A+
Sbjct: 60 IQIDGVSWNSVPLQKWRKAFGVIPQKVFIFSGTFRKN-LDPYGKWSDEEIWKVAEEVGLK 118
Query: 324 SFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQ 383
S +E P + +GG LS G KQ + +AR+VL KILLLDE ++ LD + +++
Sbjct: 119 SVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQVIR 178
Query: 384 RALEKIMSNRTTIVVAHRLSTVRDVDTIMVLKNGQV 419
+ L++ ++ T I+ HR+ + + +V++ +V
Sbjct: 179 KTLKQAFADCTVILSEHRIEAMLECQRFLVIEENKV 214
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. Length = 275 |
| >gnl|CDD|172743 PRK14255, PRK14255, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 110 bits (277), Expect = 5e-27
Identities = 69/215 (32%), Positives = 109/215 (50%), Gaps = 8/215 (3%)
Query: 853 FENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYD-----PISGTVLIDGYDIRTLNLR 907
+ ++L + A++G SG GKST + + R D I+G V + G +I N
Sbjct: 21 LKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNED 80
Query: 908 S--LRRKIGLVQQEPALFSTTIYENIKYGNEDASEIELMKATKAANAHGFISRMPEGYQS 965
LR+++G+V Q+P F +IYEN+ YG A + +A + + + +
Sbjct: 81 VVQLRKQVGMVFQQPNPFPFSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWDEVKD 140
Query: 966 HVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLMEGRTT 1025
H+ + + LSGGQ+QRV IAR + P ++LLDE TSALD S I+ L +L + T
Sbjct: 141 HLHESALSLSGGQQQRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRDQYTI 200
Query: 1026 IMVAHRLSTI-RNADKIAVLQQGKVAEIGSHEQLL 1059
I+V H + R +DK A G + E +Q+
Sbjct: 201 ILVTHSMHQASRISDKTAFFLTGNLIEFADTKQMF 235
|
Length = 252 |
| >gnl|CDD|172747 PRK14259, PRK14259, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 111 bits (278), Expect = 6e-27
Identities = 76/238 (31%), Positives = 120/238 (50%), Gaps = 28/238 (11%)
Query: 225 NLNFSVDAGKTFAFVGPSGSGKSTIISMVQR---LYEPTS--GKILLDGHDLKSLQLK-- 277
N+ + GK A +GPSG GKST++ + R L E S G++L DG DL ++
Sbjct: 31 NVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVDPV 90
Query: 278 WLREQMGLVSQEPALFATSIANNILLGKE----DASMDRVIEAA--KAANAHSFVEGLPD 331
+R ++G+V Q+P F SI NI G MD ++E + KAA + D
Sbjct: 91 EVRRRIGMVFQQPNPFPKSIYENIAFGARINGYTGDMDELVERSLRKAA--------VWD 142
Query: 332 GYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMS 391
+ ++ E G LSGGQ+QR+ IAR + P+++L+DE SALD S L ++ + ++
Sbjct: 143 ECKDKLNESGYSLSGGQQQRLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKK 202
Query: 392 NRTTIVVAHRLSTVRDVDTIMVLKNGQVVESGTHVDLISKGGEYAALVNLQSSEHLSN 449
N T ++V H + V + N + VE G+ GG+ LV ++ + N
Sbjct: 203 NFTIVIVTHNMQQAVRVSDMTAFFNAEEVEGGS-------GGKVGYLVEFNETKKIFN 253
|
Length = 269 |
| >gnl|CDD|226905 COG4525, TauB, ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 110 bits (277), Expect = 6e-27
Identities = 60/196 (30%), Positives = 103/196 (52%), Gaps = 16/196 (8%)
Query: 839 NVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDG 898
++S Y +P E+++L +++G + V+G SG GK+T+++L+ F P G++ ++G
Sbjct: 8 HLSLSYEGKPRS-ALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNG 66
Query: 899 YDIRTLNLRSLRRKIGLVQQEPALFS-TTIYENIKYGNEDASEIELMKATKAANAHGFIS 957
R + R G+V Q AL + +N+ +G + + KA + AH ++
Sbjct: 67 ---RRIEGPGAER--GVVFQNEALLPWLNVIDNVAFGLQLRG---IEKAQRREIAHQMLA 118
Query: 958 RMP-EGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEAL 1016
+ EG + QLSGG +QRV IARA+ P +LLLDE ALD + +QE L
Sbjct: 119 LVGLEGAEHK---YIWQLSGGMRQRVGIARALAVEPQLLLLDEPFGALDALTREQMQELL 175
Query: 1017 DKLME--GRTTIMVAH 1030
L + G+ +++ H
Sbjct: 176 LDLWQETGKQVLLITH 191
|
Length = 259 |
| >gnl|CDD|131266 TIGR02211, LolD_lipo_ex, lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Score = 109 bits (274), Expect = 7e-27
Identities = 66/211 (31%), Positives = 109/211 (51%), Gaps = 20/211 (9%)
Query: 222 VFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSL---QLKW 278
V + ++ S+ G+ A VG SGSGKST++ ++ L PTSG++L +G L L +
Sbjct: 20 VLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAK 79
Query: 279 LR-EQMGLVSQEPALFAT-SIANNI----LLGKEDASMDRVIEAAKAANAHSFVEGLPDG 332
LR +++G + Q L + N+ L+GK+ V EA + A GL
Sbjct: 80 LRNKKLGFIYQFHHLLPDFTALENVAMPLLIGKKS-----VKEAKERAYEMLEKVGLEHR 134
Query: 333 YQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSN 392
+ E LSGG++QR+AIARA++ P ++L DE T LD + I+ + ++
Sbjct: 135 INHRPSE----LSGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRE 190
Query: 393 RTT--IVVAHRLSTVRDVDTIMVLKNGQVVE 421
T +VV H L + +D ++ +K+GQ+
Sbjct: 191 LNTSFLVVTHDLELAKKLDRVLEMKDGQLFN 221
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina [Protein fate, Protein and peptide secretion and trafficking]. Length = 221 |
| >gnl|CDD|172761 PRK14273, PRK14273, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 110 bits (276), Expect = 8e-27
Identities = 77/233 (33%), Positives = 117/233 (50%), Gaps = 11/233 (4%)
Query: 835 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYD-----P 889
IE N++ Y D N+N+K+ A++G SG GKST + + R D
Sbjct: 8 IETENLNLFYT---DFKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIK 64
Query: 890 ISGTVLIDGYDIRTLN--LRSLRRKIGLVQQEPALFSTTIYENIKYGNEDASEIELMKAT 947
I G V+ +G +I + N + LRRKIG+V Q P F +IY+NI YG + + K
Sbjct: 65 IEGNVIYEGKNIYSNNFDILELRRKIGMVFQTPNPFLMSIYDNISYGPKIHGTKDKKKLD 124
Query: 948 KAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTA 1007
+ S + + + + LSGGQ+QR+ IAR + P+++L+DE TSALD
Sbjct: 125 EIVEQSLKKSALWNEVKDKLNTNALSLSGGQQQRLCIARTLAIEPNVILMDEPTSALDPI 184
Query: 1008 SENLIQEALDKLMEGRTTIMVAHRLSTI-RNADKIAVLQQGKVAEIGSHEQLL 1059
S I+E + L E T I+V H + R +D+ A G + E S ++L
Sbjct: 185 STGKIEELIINLKESYTIIIVTHNMQQAGRISDRTAFFLNGCIEEESSTDELF 237
|
Length = 254 |
| >gnl|CDD|213191 cd03224, ABC_TM1139_LivF_branched, ATP-binding cassette domain of branched-chain amino acid transporter | Back alignment and domain information |
|---|
Score = 109 bits (274), Expect = 8e-27
Identities = 66/221 (29%), Positives = 108/221 (48%), Gaps = 30/221 (13%)
Query: 222 VFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQL-KWLR 280
+ ++ +V G+ A +G +G+GK+T++ + L P SG I DG D+ L + R
Sbjct: 15 ILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERAR 74
Query: 281 EQMGLVSQEPALFAT-SIANNILLG-------KEDASMDRVIEAAKAANAHSFVEGLPDG 332
+G V + +F ++ N+LLG K A ++RV E P
Sbjct: 75 AGIGYVPEGRRIFPELTVEENLLLGAYARRRAKRKARLERVYEL------------FPRL 122
Query: 333 YQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQ---RALEKI 389
+ + GT LSGG++Q +AIARA++ PK+LLLDE + L + IV+ A+ ++
Sbjct: 123 KERRKQLAGT-LSGGEQQMLAIARALMSRPKLLLLDEPSEGL---APKIVEEIFEAIREL 178
Query: 390 MSNRTTIV-VAHRLSTVRDV-DTIMVLKNGQVVESGTHVDL 428
TI+ V ++ D VL+ G+VV GT +L
Sbjct: 179 RDEGVTILLVEQNARFALEIADRAYVLERGRVVLEGTAAEL 219
|
LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. Length = 222 |
| >gnl|CDD|184195 PRK13635, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 110 bits (278), Expect = 9e-27
Identities = 71/232 (30%), Positives = 114/232 (49%), Gaps = 27/232 (11%)
Query: 206 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKIL 265
I + F YP ++++FSV G+ A VG +GSGKST+ ++ L P +G I
Sbjct: 6 IRVEHISFRYPDAATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTIT 65
Query: 266 LDGHDLKSLQLKW-LREQMGLVSQEP--ALFATSIANNILLGKEDASM------DRVIEA 316
+ G L S + W +R Q+G+V Q P ++ +++ G E+ + +RV +A
Sbjct: 66 VGGMVL-SEETVWDVRRQVGMVFQNPDNQFVGATVQDDVAFGLENIGVPREEMVERVDQA 124
Query: 317 AKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALD- 375
+ F+ P +LSGGQKQR+AIA + P I++LDEATS LD
Sbjct: 125 LRQVGMEDFLNREP-----------HRLSGGQKQRVAIAGVLALQPDIIILDEATSMLDP 173
Query: 376 ---AESELIVQRALEKIMSNRTTIVVAHRLSTVRDVDTIMVLKNGQVVESGT 424
E V++ E+ T + + H L D ++V+ G+++E GT
Sbjct: 174 RGRREVLETVRQLKEQ--KGITVLSITHDLDEAAQADRVIVMNKGEILEEGT 223
|
Length = 279 |
| >gnl|CDD|213191 cd03224, ABC_TM1139_LivF_branched, ATP-binding cassette domain of branched-chain amino acid transporter | Back alignment and domain information |
|---|
Score = 109 bits (274), Expect = 9e-27
Identities = 66/238 (27%), Positives = 113/238 (47%), Gaps = 31/238 (13%)
Query: 835 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTV 894
+E+ N++ Y I ++L V G +A++G++G+GK+T++ +M P SG++
Sbjct: 1 LEVENLNAGYG---KSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSI 57
Query: 895 LIDGYDIRTLNLRS-LRRKIGLVQQEPALFST-TIYENIKYGNEDASEIELMKATKAANA 952
DG DI L R IG V + +F T+ EN+ L+ A A
Sbjct: 58 RFDGRDITGLPPHERARAGIGYVPEGRRIFPELTVEENL-----------LLGAYARRRA 106
Query: 953 HGFISRMPEGYQ------SHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDT 1006
+R+ Y+ LSGG++Q +AIARA++ P +LLLDE + L
Sbjct: 107 KRK-ARLERVYELFPRLKERRKQLAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGL-- 163
Query: 1007 ASENLIQEALDKLM----EGRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGSHEQLL 1059
+ +++E + + EG T ++V AD+ VL++G+V G+ +LL
Sbjct: 164 -APKIVEEIFEAIRELRDEGVTILLVEQNARFALEIADRAYVLERGRVVLEGTAAELL 220
|
LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. Length = 222 |
| >gnl|CDD|182331 PRK10247, PRK10247, putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Score = 109 bits (274), Expect = 9e-27
Identities = 58/161 (36%), Positives = 93/161 (57%), Gaps = 6/161 (3%)
Query: 222 VFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLRE 281
+ N++FS+ AG+ GPSG GKST++ +V L PTSG +L +G D+ +L+ + R+
Sbjct: 22 ILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYRQ 81
Query: 282 QMGLVSQEPALFATSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGG 341
Q+ +Q P LF ++ +N++ + + A + F LPD T + +
Sbjct: 82 QVSYCAQTPTLFGDTVYDNLIFPWQ-IRNQQPDPAIFLDDLERF--ALPD---TILTKNI 135
Query: 342 TQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIV 382
+LSGG+KQRI++ R + PK+LLLDE TSALD ++ V
Sbjct: 136 AELSGGEKQRISLIRNLQFMPKVLLLDEITSALDESNKHNV 176
|
Length = 225 |
| >gnl|CDD|213183 cd03216, ABC_Carb_Monos_I, First domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 107 bits (269), Expect = 9e-27
Identities = 57/220 (25%), Positives = 100/220 (45%), Gaps = 63/220 (28%)
Query: 835 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTV 894
+ELR ++ ++ + + ++L V G A++G++G+GKST++ ++ Y P SG +
Sbjct: 1 LELRGITKRFG---GVKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEI 57
Query: 895 LIDGYDIRTLNLR-SLRRKIGLVQQEPALFSTTIYENIKYGNEDASEIELMKATKAANAH 953
L+DG ++ + R + R I +Y
Sbjct: 58 LVDGKEVSFASPRDARRAGIA-----------MVY------------------------- 81
Query: 954 GFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTA-SENLI 1012
QLS G++Q V IARA+ +N +L+LDE T+AL A E L
Sbjct: 82 -------------------QLSVGERQMVEIARALARNARLLILDEPTAALTPAEVERLF 122
Query: 1013 QEALDKLM-EGRTTIMVAHRLSTIRN-ADKIAVLQQGKVA 1050
+ + +L +G I ++HRL + AD++ VL+ G+V
Sbjct: 123 -KVIRRLRAQGVAVIFISHRLDEVFEIADRVTVLRDGRVV 161
|
This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 163 |
| >gnl|CDD|226927 COG4555, NatA, ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 109 bits (275), Expect = 1e-26
Identities = 59/204 (28%), Positives = 105/204 (51%), Gaps = 9/204 (4%)
Query: 224 ENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQM 283
+++F + G+ +G +G+GK+T++ M+ L P SGK+ +DG D ++R ++
Sbjct: 19 RDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVR-DPSFVRRKI 77
Query: 284 GLVSQEPALFA-TSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGT 342
G++ E L+A + N+ + R A+ A + L + +VGE
Sbjct: 78 GVLFGERGLYARLTARENLKYFARLNGLSRKEIKARIAELSKRL-QLLEYLDRRVGE--- 133
Query: 343 QLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIM-SNRTTIVVAHR 401
S G KQ++AIARA++ +P IL+LDE TS LD + ++++ R I +H
Sbjct: 134 -FSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFSSHI 192
Query: 402 LSTVRDV-DTIMVLKNGQVVESGT 424
+ V + D ++VL G+VV G+
Sbjct: 193 MQEVEALCDRVIVLHKGEVVLEGS 216
|
Length = 245 |
| >gnl|CDD|172760 PRK14272, PRK14272, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 109 bits (274), Expect = 1e-26
Identities = 72/211 (34%), Positives = 116/211 (54%), Gaps = 15/211 (7%)
Query: 225 NLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPT-----SGKILLDGHDLKSLQLK-- 277
N+N V G A +GPSG GK+T + + R+++ T +G+ILLDG D+ ++
Sbjct: 22 NVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDPV 81
Query: 278 WLREQMGLVSQEPALFAT-SIANNILLGKEDASM---DRVIEAAKAANAHSFVEGLPDGY 333
+R ++G+V Q+P F T S+ +N++ G + A + D ++E A+ + + L D
Sbjct: 82 AMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGA---ALWDEV 138
Query: 334 QTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNR 393
+ ++ T LSGGQ+QR+ IARA+ P+ILL+DE TSALD S ++ + +
Sbjct: 139 KDRLKTPATGLSGGQQQRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKKVT 198
Query: 394 TTIVVAHRL-STVRDVDTIMVLKNGQVVESG 423
T I+V H + R DT G +VE G
Sbjct: 199 TIIIVTHNMHQAARVSDTTSFFLVGDLVEHG 229
|
Length = 252 |
| >gnl|CDD|184582 PRK14236, PRK14236, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 110 bits (276), Expect = 2e-26
Identities = 62/190 (32%), Positives = 101/190 (53%), Gaps = 21/190 (11%)
Query: 225 NLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYE-----PTSGKILLDGHDL--KSLQLK 277
+++ + + AF+GPSG GKST++ R+ + G+I LDG ++ K + +
Sbjct: 43 DISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKVDVA 102
Query: 278 WLREQMGLVSQEPALFATSIANNILLG------KEDASMDRVIEAA-KAANAHSFVEGLP 330
LR ++G+V Q P F SI N++ G +D +E + + A L
Sbjct: 103 ELRRRVGMVFQRPNPFPKSIYENVVYGLRLQGINNRRVLDEAVERSLRGA-------ALW 155
Query: 331 DGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIM 390
D + ++ E LSGGQ+QR+ IARA+ P++LLLDE TSALD S L ++ + ++
Sbjct: 156 DEVKDRLHENAFGLSGGQQQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELK 215
Query: 391 SNRTTIVVAH 400
S T ++V H
Sbjct: 216 SKYTIVIVTH 225
|
Length = 272 |
| >gnl|CDD|172733 PRK14245, PRK14245, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 108 bits (272), Expect = 2e-26
Identities = 69/214 (32%), Positives = 112/214 (52%), Gaps = 22/214 (10%)
Query: 223 FENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYE--PTS---GKILLDGHDL--KSLQ 275
+ ++ ++ AF+GPSG GKST + + R+ + P + G+I +DG ++ K +Q
Sbjct: 19 LKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQ 78
Query: 276 LKWLREQMGLVSQEPALFATSIANNILLG------KEDASM-DRVIEAAKAANAHSFVEG 328
+ LR+ +G+V Q P F SI N+ G K++A + RV E K A
Sbjct: 79 VDELRKNVGMVFQRPNPFPKSIFENVAYGLRVNGVKDNAFIRQRVEETLKGA-------A 131
Query: 329 LPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEK 388
L D + ++ E LSGGQ+QR+ IARA+ +P +LL+DE SALD S V+ + +
Sbjct: 132 LWDEVKDKLKESAFALSGGQQQRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHE 191
Query: 389 IMSNRTTIVVAHRL-STVRDVDTIMVLKNGQVVE 421
+ + T ++V H + R D G++VE
Sbjct: 192 LKKDYTIVIVTHNMQQAARVSDKTAFFYMGEMVE 225
|
Length = 250 |
| >gnl|CDD|188394 TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Score = 108 bits (273), Expect = 2e-26
Identities = 68/226 (30%), Positives = 118/226 (52%), Gaps = 11/226 (4%)
Query: 206 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKIL 265
+E + + F Y +R ++++F+V G+ A +GP+G+GKST+ S++ RLY G+I
Sbjct: 2 LEVAGLSFRYGARR--ALDDVSFTVRPGRFVALLGPNGAGKSTLFSLLTRLYVAQEGQIS 59
Query: 266 LDGHDLKSLQLKWLREQMGLVSQEPAL-FATSIANNILLGKEDASMDRVIEAAKAANAHS 324
+ GHDL+ L ++G+V Q+P L S+ N+ + R A+ A +
Sbjct: 60 VAGHDLRRAPRAALA-RLGVVFQQPTLDLDLSVRQNLRYHAALHGLSRAEARARIAELLA 118
Query: 325 FVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQR 384
+ GL + +V E L+GG ++R+ IARA+L P +LLLDE T LD S +
Sbjct: 119 RL-GLAERADDKVRE----LNGGHRRRVEIARALLHRPALLLLDEPTVGLDPASRAAITA 173
Query: 385 ALEKIMSNRTTIVV--AHRLSTVRDVDTIMVLKNGQVVESGTHVDL 428
+ + ++ V+ H + + D ++VL G+V+ G +L
Sbjct: 174 HVRALARDQGLSVLWATHLVDEIEADDRLVVLHRGRVLADGAAAEL 219
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 236 |
| >gnl|CDD|131266 TIGR02211, LolD_lipo_ex, lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Score = 108 bits (271), Expect = 2e-26
Identities = 65/214 (30%), Positives = 110/214 (51%), Gaps = 20/214 (9%)
Query: 849 DITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLN--- 905
D + + ++L + G +A+VG SGSGKST++ L+ +P SG VL +G + L+
Sbjct: 17 DTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNE 76
Query: 906 LRSLR-RKIGLVQQEPALFST-TIYENIKY----GNEDASEIELMKATKAANAHGFISRM 959
LR +K+G + Q L T EN+ G + E + +A + G R+
Sbjct: 77 RAKLRNKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEAK-ERAYEMLEKVGLEHRI 135
Query: 960 PEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKL 1019
+H R +LSGG++QRVAIARA++ PS++L DE T LD + +I + + +L
Sbjct: 136 -----NH---RPSELSGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLEL 187
Query: 1020 MEGRTT--IMVAHRLSTIRNADKIAVLQQGKVAE 1051
T ++V H L + D++ ++ G++
Sbjct: 188 NRELNTSFLVVTHDLELAKKLDRVLEMKDGQLFN 221
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina [Protein fate, Protein and peptide secretion and trafficking]. Length = 221 |
| >gnl|CDD|237649 PRK14254, PRK14254, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 109 bits (275), Expect = 2e-26
Identities = 71/234 (30%), Positives = 123/234 (52%), Gaps = 26/234 (11%)
Query: 835 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPI---- 890
IE R+++ Y D +++++ + + A++G SG GKST + + R D I
Sbjct: 40 IEARDLNVFYG---DEQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAAR 96
Query: 891 -SGTVLIDGYDIRTLNLR--SLRRKIGLVQQEPALFSTTIYENIKYG------NEDASEI 941
G + G ++ ++ +LRR+IG+V Q+P F +IY+N+ YG + D E
Sbjct: 97 VEGELTFRGKNVYDADVDPVALRRRIGMVFQKPNPFPKSIYDNVAYGLKIQGYDGDIDER 156
Query: 942 ELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEAT 1001
+AA + + + + G+ LSGGQ+QR+ IARAI +P ++L+DE
Sbjct: 157 VEESLRRAA--------LWDEVKDQLDSSGLDLSGGQQQRLCIARAIAPDPEVILMDEPA 208
Query: 1002 SALDTASENLIQEALDKLMEGRTTIMVAHRL-STIRNADKIAV-LQQGKVAEIG 1053
SALD + + I++ +++L E T ++V H + R +DK AV L G++ E
Sbjct: 209 SALDPVATSKIEDLIEELAEEYTVVIVTHNMQQAARISDKTAVFLTGGELVEFD 262
|
Length = 285 |
| >gnl|CDD|215595 PLN03130, PLN03130, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 116 bits (293), Expect = 3e-26
Identities = 71/259 (27%), Positives = 134/259 (51%), Gaps = 35/259 (13%)
Query: 818 IQPDDPASKEVTEIKGNIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKS 877
++P PA I ++N F + + + N+NL V G +A+VG +G GK+
Sbjct: 608 LEPGLPA----------ISIKNGYFSWDSKAERPTLSNINLDVPVGSLVAIVGSTGEGKT 657
Query: 878 TVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRKIGLVQQEPALFSTTIYENIKYGNE- 936
++IS ++ P S ++ +R + V Q +F+ T+ +NI +G+
Sbjct: 658 SLISAMLGELPPRSDASVV------------IRGTVAYVPQVSWIFNATVRDNILFGSPF 705
Query: 937 DASEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILL 996
D E +A + +P G + +G+RGV +SGGQKQRV++ARA+ N + +
Sbjct: 706 DPERYE--RAIDVTALQHDLDLLPGGDLTEIGERGVNISGGQKQRVSMARAVYSNSDVYI 763
Query: 997 LDEATSALDTASENLIQEALDKL----MEGRTTIMVAHRLSTIRNADKIAVLQQGKVAEI 1052
D+ SALD ++ ++ DK + G+T ++V ++L + D+I ++ +G + E
Sbjct: 764 FDDPLSALDA---HVGRQVFDKCIKDELRGKTRVLVTNQLHFLSQVDRIILVHEGMIKEE 820
Query: 1053 GSHEQLLRKENG-IYKQLI 1070
G++E+L NG ++++L+
Sbjct: 821 GTYEELSN--NGPLFQKLM 837
|
Length = 1622 |
| >gnl|CDD|182221 PRK10070, PRK10070, glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 112 bits (280), Expect = 3e-26
Identities = 71/215 (33%), Positives = 120/215 (55%), Gaps = 25/215 (11%)
Query: 224 ENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLRE-- 281
++ + +++ G+ F +G SGSGKST++ ++ RL EPT G++L+DG D+ + LRE
Sbjct: 45 KDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVR 104
Query: 282 --QMGLVSQEPALFA-TSIANNILLGKEDASM------DRVIEAAKAANAHSFVEGLPDG 332
++ +V Q AL ++ +N G E A + ++ ++A + ++ PD
Sbjct: 105 RKKIAMVFQSFALMPHMTVLDNTAFGMELAGINAEERREKALDALRQVGLENYAHSYPD- 163
Query: 333 YQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMS- 391
+LSGG +QR+ +ARA+ NP ILL+DEA SALD +Q L K+ +
Sbjct: 164 ----------ELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAK 213
Query: 392 -NRTTIVVAHRL-STVRDVDTIMVLKNGQVVESGT 424
RT + ++H L +R D I +++NG+VV+ GT
Sbjct: 214 HQRTIVFISHDLDEAMRIGDRIAIMQNGEVVQVGT 248
|
Length = 400 |
| >gnl|CDD|237645 PRK14235, PRK14235, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 109 bits (273), Expect = 3e-26
Identities = 64/192 (33%), Positives = 106/192 (55%), Gaps = 24/192 (12%)
Query: 225 NLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEP-----TSGKILLDGHDL--KSLQLK 277
+++ + AF+GPSG GKST + + R+ + +GKI LDG D+ L +
Sbjct: 37 DVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRLDVV 96
Query: 278 WLREQMGLVSQEPALFATSIANNILLG-------KEDASMDRVIEAA--KAANAHSFVEG 328
LR ++G+V Q+P F SI N+ G + A +D ++E + KA G
Sbjct: 97 ELRARVGMVFQKPNPFPKSIYENVAYGPRIHGLARSKAELDEIVETSLRKA--------G 148
Query: 329 LPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEK 388
L + + ++ E GT LSGGQ+QR+ IARA+ +P+++L+DE SALD + V+ +++
Sbjct: 149 LWEEVKDRLHEPGTGLSGGQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDE 208
Query: 389 IMSNRTTIVVAH 400
+ N T ++V H
Sbjct: 209 LRQNYTIVIVTH 220
|
Length = 267 |
| >gnl|CDD|188098 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Score = 116 bits (291), Expect = 4e-26
Identities = 75/259 (28%), Positives = 136/259 (52%), Gaps = 22/259 (8%)
Query: 818 IQPDDPASKEVTEIKGN-IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGK 876
++PD + + +GN I + N +F + R + + G +AVVGQ G GK
Sbjct: 619 LEPDSIERRTIKPGEGNSITVHNATFTW-ARDLPPTLNGITFSIPEGALVAVVGQVGCGK 677
Query: 877 STVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRKIGLVQQEPALFSTTIYENIKYGNE 936
S+++S ++ D + G V + G + V Q+ + + ++ ENI +G
Sbjct: 678 SSLLSALLAEMDKVEGHVHMKG-------------SVAYVPQQAWIQNDSLRENILFGK- 723
Query: 937 DASEIELMKATKAANAH-GFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSIL 995
A + + A A + +P G ++ +G++GV LSGGQKQRV++ARA+ N I
Sbjct: 724 -ALNEKYYQQVLEACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIY 782
Query: 996 LLDEATSALDTASENLIQEAL---DKLMEGRTTIMVAHRLSTIRNADKIAVLQQGKVAEI 1052
L D+ SA+D I E + + +++ +T I+V H +S + D I V+ GK++E+
Sbjct: 783 LFDDPLSAVDAHVGKHIFEHVIGPEGVLKNKTRILVTHGISYLPQVDVIIVMSGGKISEM 842
Query: 1053 GSHEQLLRKENGIYKQLIR 1071
GS+++LL++ +G + + +R
Sbjct: 843 GSYQELLQR-DGAFAEFLR 860
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved [Transport and binding proteins, Other]. Length = 1522 |
| >gnl|CDD|184208 PRK13649, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 109 bits (273), Expect = 4e-26
Identities = 74/247 (29%), Positives = 121/247 (48%), Gaps = 34/247 (13%)
Query: 835 IELRNVSFKYPVRPDITIFE-----NLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDP 889
I L+NVS+ Y T FE ++NL + G A +G +GSGKST++ L+ + P
Sbjct: 3 INLQNVSYTYQAG---TPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVP 59
Query: 890 ISGTVLIDGYDIRTL----NLRSLRRKIGLVQQ--EPALFSTTIYENIKYG-------NE 936
G+V +D I + +++ +R+K+GLV Q E LF T+ +++ +G E
Sbjct: 60 TQGSVRVDDTLITSTSKNKDIKQIRKKVGLVFQFPESQLFEETVLKDVAFGPQNFGVSQE 119
Query: 937 DASEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILL 996
+A + K + + P +LSGGQ +RVAIA + P IL+
Sbjct: 120 EAEALAREKLALVGISESLFEKNP-----------FELSGGQMRRVAIAGILAMEPKILV 168
Query: 997 LDEATSALDTASENLIQEALDKLME-GRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGS 1054
LDE T+ LD + KL + G T ++V H + + N AD + VL++GK+ G
Sbjct: 169 LDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLMDDVANYADFVYVLEKGKLVLSGK 228
Query: 1055 HEQLLRK 1061
+ + +
Sbjct: 229 PKDIFQD 235
|
Length = 280 |
| >gnl|CDD|236523 PRK09452, potA, putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Score = 110 bits (278), Expect = 5e-26
Identities = 72/225 (32%), Positives = 112/225 (49%), Gaps = 43/225 (19%)
Query: 220 HMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWL 279
V NL+ +++ G+ +GPSG GK+T++ ++ P SG+I+LDG D+ + +
Sbjct: 27 KEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPAE-- 84
Query: 280 REQMGLVSQEPALFA-TSIANNILLG------KEDASMDRVIEAAKAANAHSFVEGLPDG 332
+ V Q ALF ++ N+ G RV+EA + F + P
Sbjct: 85 NRHVNTVFQSYALFPHMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQLEEFAQRKP-- 142
Query: 333 YQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDA------ESEL-IVQRA 385
QLSGGQ+QR+AIARAV+ PK+LLLDE+ SALD ++EL +QR
Sbjct: 143 ---------HQLSGGQQQRVAIARAVVNKPKVLLLDESLSALDYKLRKQMQNELKALQRK 193
Query: 386 LEKIMSNRTTIVVAH------RLSTVRDVDTIMVLKNGQVVESGT 424
L T + V H +S D I+V+++G++ + GT
Sbjct: 194 L-----GITFVFVTHDQEEALTMS-----DRIVVMRDGRIEQDGT 228
|
Length = 375 |
| >gnl|CDD|184584 PRK14238, PRK14238, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 108 bits (272), Expect = 5e-26
Identities = 68/216 (31%), Positives = 111/216 (51%), Gaps = 20/216 (9%)
Query: 220 HMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYE-----PTSGKILLDGHDL--K 272
+N+N + + A +GPSG GKST I + R+ E T+GKIL ++ K
Sbjct: 37 DHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDK 96
Query: 273 SLQLKWLREQMGLVSQEPALFATSIANNILLG------KEDASMDRVIEAAKAANAHSFV 326
S ++ LR +G+V Q+P F SI +N+ G K+ ++D ++E + A
Sbjct: 97 SYSVEELRTNVGMVFQKPNPFPKSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAA---- 152
Query: 327 EGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRAL 386
+ D + ++ + LSGGQ+QR+ IAR + P ++L+DE TSALD S L V+ +
Sbjct: 153 --IWDELKDRLHDNAYGLSGGQQQRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELV 210
Query: 387 EKIMSNRTTIVVAHRL-STVRDVDTIMVLKNGQVVE 421
+++ + + I+V H + R D NG V E
Sbjct: 211 QELKKDYSIIIVTHNMQQAARISDKTAFFLNGYVNE 246
|
Length = 271 |
| >gnl|CDD|132302 TIGR03258, PhnT, 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Score = 110 bits (277), Expect = 5e-26
Identities = 69/237 (29%), Positives = 117/237 (49%), Gaps = 25/237 (10%)
Query: 833 GNIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDP--I 890
G I + ++ Y T+ ++L+L++ AG LA++G+SG GK+T++ + F +
Sbjct: 4 GGIRIDHLRVAYGAN---TVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGL 60
Query: 891 SGTVLIDGYDIRTLNLRSLRRKIGLVQQEPALFS-TTIYENIKYGNEDASEIELMKATKA 949
+G + I D+ + +R + L+ Q ALF + +N+ +G + A +
Sbjct: 61 TGRIAIADRDLT--HAPPHKRGLALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAERV 118
Query: 950 ANAHGFISRMPEGYQSHVGDRGV----QLSGGQKQRVAIARAILKNPSILLLDEATSALD 1005
A+A + +GD QLSGG +QR+AIARAI P +LLLDE SALD
Sbjct: 119 ADALKLVG---------LGDAAAHLPAQLSGGMQQRIAIARAIAIEPDVLLLDEPLSALD 169
Query: 1006 TASENLIQEALDKLME---GRTTIMVAH-RLSTIRNADKIAVLQQGKVAEIGSHEQL 1058
++E + L E T + V H + + ADK +++ G++A G + L
Sbjct: 170 ANIRANMREEIAALHEELPELTILCVTHDQDDALTLADKAGIMKDGRLAAHGEPQAL 226
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. Length = 362 |
| >gnl|CDD|184597 PRK14270, PRK14270, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 107 bits (269), Expect = 6e-26
Identities = 67/217 (30%), Positives = 115/217 (52%), Gaps = 28/217 (12%)
Query: 225 NLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYE-----PTSGKILLDGHDL--KSLQLK 277
++N + K A +GPSG GKST + + R+ + G++LLDG ++ K + +
Sbjct: 22 DINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDVV 81
Query: 278 WLREQMGLVSQEPALFATSIANNILLG------KEDASMDRVIEAA--KAANAHSFVEGL 329
LR+++G+V Q+P F SI +N+ G K+ +D+++E A KAA L
Sbjct: 82 ELRKRVGMVFQKPNPFPMSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAA--------L 133
Query: 330 PDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKI 389
D + + + +LSGGQ+QR+ IAR + P ++L+DE TSALD S L ++ + ++
Sbjct: 134 WDEVKDDLKKSALKLSGGQQQRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVEL 193
Query: 390 MSNRTTIVVAHRL---STVRDVDTIMVLKNGQVVESG 423
T ++V H + S V D ++ G ++E
Sbjct: 194 KKEYTIVIVTHNMQQASRVSDYTAFFLM--GDLIEFN 228
|
Length = 251 |
| >gnl|CDD|226961 COG4598, HisP, ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 107 bits (270), Expect = 6e-26
Identities = 75/232 (32%), Positives = 117/232 (50%), Gaps = 40/232 (17%)
Query: 219 PHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLK------ 272
H V + ++ +AG + +G SGSGKST + + L +P++G I ++G +++
Sbjct: 18 EHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKD 77
Query: 273 -------SLQLKWLREQMGLVSQEPALFA--TSIANNI-----LLGKEDASMDRVIEAAK 318
QL+ LR ++G+V Q L++ T + N I +LG S IE A+
Sbjct: 78 GQLKPADKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVLGV---SKAEAIERAE 134
Query: 319 AANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAES 378
A + D Y LSGGQ+QR+AIARA+ P+++L DE TSALD E
Sbjct: 135 KYLAKVGIAEKADAYPAH-------LSGGQQQRVAIARALAMEPEVMLFDEPTSALDPE- 186
Query: 379 ELIVQRALEKIMSN-----RTTIVVAHRLSTVRDVDT-IMVLKNGQVVESGT 424
+V L K+M + RT +VV H + RDV + ++ L G++ E G
Sbjct: 187 --LVGEVL-KVMQDLAEEGRTMVVVTHEMGFARDVSSHVIFLHQGKIEEEGP 235
|
Length = 256 |
| >gnl|CDD|237647 PRK14248, PRK14248, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 108 bits (270), Expect = 6e-26
Identities = 79/248 (31%), Positives = 123/248 (49%), Gaps = 41/248 (16%)
Query: 835 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPI---- 890
+E++++S Y + + ++++ + A++G SG GKST + + R D I
Sbjct: 22 LEVKDLSIYYGEKRAV---NDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSAR 78
Query: 891 -SGTVLIDGYDI--RTLNLRSLRRKIGLVQQEPALFSTTIYENI----KYGNE------- 936
G +L +G +I +N+ +LRR+IG+V Q+P F +IY NI KY E
Sbjct: 79 SEGEILYEGLNILDSNINVVNLRREIGMVFQKPNPFPKSIYNNITHALKYAGERRKSVLD 138
Query: 937 DASEIELMKATKAANAHGFISRMPEGYQSHVGDR----GVQLSGGQKQRVAIARAILKNP 992
+ E L TKAA V DR + LSGGQ+QR+ IAR + P
Sbjct: 139 EIVEESL---TKAA------------LWDEVKDRLHSSALSLSGGQQQRLCIARTLAMKP 183
Query: 993 SILLLDEATSALDTASENLIQEALDKLMEGRTTIMVAHRL-STIRNADKIAVLQQGKVAE 1051
++LLLDE SALD S I+E + +L E + I+V H + +R +D+ A G + E
Sbjct: 184 AVLLLDEPASALDPISNAKIEELITELKEEYSIIIVTHNMQQALRVSDRTAFFLNGDLVE 243
Query: 1052 IGSHEQLL 1059
EQ+
Sbjct: 244 YDQTEQIF 251
|
Length = 268 |
| >gnl|CDD|237646 PRK14237, PRK14237, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 108 bits (271), Expect = 6e-26
Identities = 68/198 (34%), Positives = 103/198 (52%), Gaps = 18/198 (9%)
Query: 867 AVVGQSGSGKSTVISLVMRFYDPI-----SGTVLIDGYDIRT--LNLRSLRRKIGLVQQE 919
A++G SGSGKST + + R D I +G +L G DI +N+ +R+ IG+V Q
Sbjct: 50 ALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEINVYEMRKHIGMVFQR 109
Query: 920 PALFSTTIYENIKY-----GNEDASEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQL 974
P F+ +IYENI + G +D ++ + T A + + + + + L
Sbjct: 110 PNPFAKSIYENITFALERAGVKDKKVLDEIVETSLKQA-----ALWDQVKDDLHKSALTL 164
Query: 975 SGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLMEGRTTIMVAHRLS- 1033
SGGQ+QR+ IARAI P ILL+DE SALD S ++E + +L + T I+V H +
Sbjct: 165 SGGQQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELKKNYTIIIVTHNMQQ 224
Query: 1034 TIRNADKIAVLQQGKVAE 1051
R +D A G + E
Sbjct: 225 AARASDYTAFFYLGDLIE 242
|
Length = 267 |
| >gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Score = 115 bits (290), Expect = 6e-26
Identities = 97/319 (30%), Positives = 156/319 (48%), Gaps = 42/319 (13%)
Query: 182 IKENSHSSERP-GDDGITLPKLAGQIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVG 240
IK+N+ + ++P GDDG+ FS F+ P V +N++F ++ G+ A G
Sbjct: 413 IKQNNKARKQPNGDDGLF---------FSN--FSLYVTP--VLKNISFKLEKGQLLAVAG 459
Query: 241 PSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGLVSQEPALFATSIANN 300
+GSGKS+++ M+ EP+ GKI G S Q W+ +I +N
Sbjct: 460 STGSGKSSLLMMIMGELEPSEGKIKHSGRISFSPQTSWI-------------MPGTIKDN 506
Query: 301 ILLGKEDASMD--RVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAV 358
I+ G S D R KA + P+ +T +GEGG LSGGQ+ RI++ARAV
Sbjct: 507 IIFG---LSYDEYRYTSVIKACQLEEDIALFPEKDKTVLGEGGITLSGGQRARISLARAV 563
Query: 359 LRNPKILLLDEATSALDAESEL-IVQRALEKIMSNRTTIVVAHRLSTVRDVDTIMVLKNG 417
++ + LLD + LD +E I + L K+MSN+T I+V +L ++ D I++L G
Sbjct: 564 YKDADLYLLDSPFTHLDVVTEKEIFESCLCKLMSNKTRILVTSKLEHLKKADKILLLHEG 623
Query: 418 QVVESGTHVDLISKGGEYAALVNLQSSEHLSNPSSICYSGSSRYSSFRDFPSSRRYDVEF 477
GT +L +K ++++L L E N +S R S + + RR ++
Sbjct: 624 VCYFYGTFSELQAKRPDFSSL--LLGLEAFDN-----FSAERRNSILTE--TLRRVSIDG 674
Query: 478 ESSKRRELQSSDQSFAPSP 496
+S+ ++ QSF P
Sbjct: 675 DSTVFSGPETIKQSFKQPP 693
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se [Transport and binding proteins, Anions]. Length = 1490 |
| >gnl|CDD|183133 PRK11432, fbpC, ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 110 bits (276), Expect = 6e-26
Identities = 80/247 (32%), Positives = 128/247 (51%), Gaps = 36/247 (14%)
Query: 835 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTV 894
+ L+N++ ++ T+ +NLNL + G + ++G SG GK+TV+ LV P G +
Sbjct: 7 VVLKNITKRFG---SNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQI 63
Query: 895 LIDGYDIRTLNLRSLR-RKIGLVQQEPALFS-TTIYENIKYG----NEDASEIE--LMKA 946
IDG D+ RS++ R I +V Q ALF ++ EN+ YG E + + +A
Sbjct: 64 FIDGEDVTH---RSIQQRDICMVFQSYALFPHMSLGENVGYGLKMLGVPKEERKQRVKEA 120
Query: 947 TKAANAHGFISRMPEGYQSHVGDRGV-QLSGGQKQRVAIARAILKNPSILLLDEATSALD 1005
+ + GF DR V Q+SGGQ+QRVA+ARA++ P +LL DE S LD
Sbjct: 121 LELVDLAGF------------EDRYVDQISGGQQQRVALARALILKPKVLLFDEPLSNLD 168
Query: 1006 TASENLIQEALDKLME-----GRTTIMVAHRLS-TIRNADKIAVLQQGKVAEIGSHEQLL 1059
NL + +K+ E T++ V H S +D + V+ +GK+ +IGS ++L
Sbjct: 169 A---NLRRSMREKIRELQQQFNITSLYVTHDQSEAFAVSDTVIVMNKGKIMQIGSPQELY 225
Query: 1060 RKENGIY 1066
R+ +
Sbjct: 226 RQPASRF 232
|
Length = 351 |
| >gnl|CDD|172200 PRK13652, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 108 bits (271), Expect = 6e-26
Identities = 80/262 (30%), Positives = 118/262 (45%), Gaps = 33/262 (12%)
Query: 835 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTV 894
IE R++ + Y N+N +AV+G +G+GKST+ P SG+V
Sbjct: 4 IETRDLCYSY--SGSKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSV 61
Query: 895 LIDGYDIRTLNLRSLRRKIGLVQQEP--ALFSTTIYENIKYG------NEDASEIELMKA 946
LI G I N+R +R+ +GLV Q P +FS T+ ++I +G +E+ + A
Sbjct: 62 LIRGEPITKENIREVRKFVGLVFQNPDDQIFSPTVEQDIAFGPINLGLDEETVAHRVSSA 121
Query: 947 TKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDT 1006
R+P LSGG+K+RVAIA I P +L+LDE T+ LD
Sbjct: 122 LHMLGLEELRDRVPH-----------HLSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDP 170
Query: 1007 ASENLIQEALDKLME--GRTTIMVAHRLSTIRN-ADKIAVLQ------QGKVAEIGSHEQ 1057
+ + L+ L E G T I H+L + AD I V+ G V EI
Sbjct: 171 QGVKELIDFLNDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGRIVAYGTVEEIFLQPD 230
Query: 1058 LLRK---ENGIYKQLIRLQQDK 1076
LL + + +LIR Q +
Sbjct: 231 LLARVHLDLPSLPKLIRSLQAQ 252
|
Length = 277 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 113 bits (284), Expect = 8e-26
Identities = 72/267 (26%), Positives = 130/267 (48%), Gaps = 43/267 (16%)
Query: 835 IELRNVSFKYPVRP--------DITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRF 886
+E+ ++ +P++ + + ++L + G++L +VG+SGSGKST+ ++R
Sbjct: 277 LEVEDLRVWFPIKGGFLRRTVDHLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRL 336
Query: 887 YDPISGTVLIDGYDIRTLN---LRSLRRKIGLVQQEPALFST---------TIYENIKYG 934
P G + DG DI L+ +R LRR++ +V Q+P + + I E ++
Sbjct: 337 -IPSQGEIRFDGQDIDGLSRKEMRPLRRRMQVVFQDP--YGSLSPRMTVGQIIEEGLRVH 393
Query: 935 NEDASEIELMKATKAA-NAHGF----ISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAIL 989
S E + A G +R P + SGGQ+QR+AIARA++
Sbjct: 394 EPKLSAAERDQRVIEALEEVGLDPATRNRYPH-----------EFSGGQRQRIAIARALI 442
Query: 990 KNPSILLLDEATSALDTASENLIQEALDKLME--GRTTIMVAHRLSTIRN-ADKIAVLQQ 1046
P ++LLDE TSALD + + + + L L + G + + ++H L+ +R ++ V++
Sbjct: 443 LKPELILLDEPTSALDRSVQAQVLDLLRDLQQKHGLSYLFISHDLAVVRALCHRVIVMRD 502
Query: 1047 GKVAEIGSHEQLLRKENGIY-KQLIRL 1072
GK+ E G E + Y + L+
Sbjct: 503 GKIVEQGPTEAVFANPQHEYTRALLAA 529
|
Length = 534 |
| >gnl|CDD|226360 COG3840, ThiQ, ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 106 bits (266), Expect = 1e-25
Identities = 77/226 (34%), Positives = 119/226 (52%), Gaps = 29/226 (12%)
Query: 226 LNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGL 285
+ +V AG+ A +GPSG+GKST+++++ P SG+IL++G D + + +
Sbjct: 18 FDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPA--ERPVSM 75
Query: 286 VSQEPALFA-TSIANNILLG-----KEDAS-MDRVIEAAKAANAHSFVEGLPDGYQTQVG 338
+ QE LFA ++A NI LG K +A ++V AA F++ LP
Sbjct: 76 LFQENNLFAHLTVAQNIGLGLSPGLKLNAEQREKVEAAAAQVGLAGFLKRLP-------- 127
Query: 339 EGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALD----AES-ELIVQRALEKIMSNR 393
+LSGGQ+QR+A+AR ++R ILLLDE SALD AE L+ Q E+ M
Sbjct: 128 ---GELSGGQRQRVALARCLVREQPILLLDEPFSALDPALRAEMLALVSQLCDERKM--- 181
Query: 394 TTIVVAHRLSTVRDV-DTIMVLKNGQVVESGTHVDLISKGGEYAAL 438
T ++V H + D ++ L NG++ G+ +L+S AAL
Sbjct: 182 TLLMVTHHPEDAARIADRVVFLDNGRIAAQGSTQELLSGKASAAAL 227
|
Length = 231 |
| >gnl|CDD|184199 PRK13639, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 107 bits (270), Expect = 1e-25
Identities = 73/238 (30%), Positives = 121/238 (50%), Gaps = 38/238 (15%)
Query: 206 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKIL 265
+E ++ ++YP + +NF + G+ A +GP+G+GKST+ + +PTSG++L
Sbjct: 2 LETRDLKYSYPD-GTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVL 60
Query: 266 LDG----HDLKSLQLKWLREQMGLVSQEP--ALFATSIANNILLG------KEDASMDRV 313
+ G +D KSL L+ +R+ +G+V Q P LFA ++ ++ G ++ RV
Sbjct: 61 IKGEPIKYDKKSL-LE-VRKTVGIVFQNPDDQLFAPTVEEDVAFGPLNLGLSKEEVEKRV 118
Query: 314 IEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSA 373
EA KA F P LSGGQK+R+AIA + P+I++LDE TS
Sbjct: 119 KEALKAVGMEGFENKPPH-----------HLSGGQKKRVAIAGILAMKPEIIVLDEPTSG 167
Query: 374 LDAESELIVQRALEKIMSNRTTIVVAHRLSTVRDVD-------TIMVLKNGQVVESGT 424
LD + + L + TI++ ST DVD + V+ +G++++ GT
Sbjct: 168 LDPMGASQIMKLLYDLNKEGITIII----ST-HDVDLVPVYADKVYVMSDGKIIKEGT 220
|
Length = 275 |
| >gnl|CDD|183133 PRK11432, fbpC, ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 109 bits (274), Expect = 1e-25
Identities = 76/225 (33%), Positives = 122/225 (54%), Gaps = 35/225 (15%)
Query: 220 HMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDL--KSLQLK 277
+ V +NLN ++ G +GPSG GK+T++ +V L +PT G+I +DG D+ +S+Q
Sbjct: 19 NTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSIQ-- 76
Query: 278 WLREQMGLVSQEPALFA-TSIANNI-----LLGKEDASM-DRVIEAAKAANAHSFVEGLP 330
+ + +V Q ALF S+ N+ +LG RV EA + + + G
Sbjct: 77 --QRDICMVFQSYALFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELVD----LAGFE 130
Query: 331 DGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRAL-EKI 389
D Y Q+ SGGQ+QR+A+ARA++ PK+LL DE S LDA ++R++ EKI
Sbjct: 131 DRYVDQI-------SGGQQQRVALARALILKPKVLLFDEPLSNLDAN----LRRSMREKI 179
Query: 390 MS-----NRTTIVVAHRLSTVRDV-DTIMVLKNGQVVESGTHVDL 428
N T++ V H S V DT++V+ G++++ G+ +L
Sbjct: 180 RELQQQFNITSLYVTHDQSEAFAVSDTVIVMNKGKIMQIGSPQEL 224
|
Length = 351 |
| >gnl|CDD|184200 PRK13640, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 107 bits (270), Expect = 1e-25
Identities = 71/233 (30%), Positives = 122/233 (52%), Gaps = 12/233 (5%)
Query: 206 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTS---G 262
+EF V F YP +++FS+ G A +G +GSGKSTI ++ L P
Sbjct: 6 VEFKHVSFTYPDSKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNS 65
Query: 263 KILLDGHDLKSLQLKWLREQMGLVSQEP--ALFATSIANNILLGKEDASMDRVIEAAKAA 320
KI +DG L + + +RE++G+V Q P ++ +++ G E+ ++ R
Sbjct: 66 KITVDGITLTAKTVWDIREKVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIKIVR 125
Query: 321 NAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESEL 380
+ + V G+ D ++ LSGGQKQR+AIA + PKI++LDE+TS LD +
Sbjct: 126 DVLADV-GMLDYIDSE----PANLSGGQKQRVAIAGILAVEPKIIILDESTSMLDPAGKE 180
Query: 381 IVQRALEKIM--SNRTTIVVAHRLSTVRDVDTIMVLKNGQVVESGTHVDLISK 431
+ + + K+ +N T I + H + D ++VL +G+++ G+ V++ SK
Sbjct: 181 QILKLIRKLKKKNNLTVISITHDIDEANMADQVLVLDDGKLLAQGSPVEIFSK 233
|
Length = 282 |
| >gnl|CDD|172749 PRK14261, PRK14261, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 106 bits (267), Expect = 1e-25
Identities = 68/223 (30%), Positives = 111/223 (49%), Gaps = 20/223 (8%)
Query: 855 NLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPIS-----GTVLIDGYDIRT--LNLR 907
++ + + R A++G SG GKST++ R D I G +L +G +I ++
Sbjct: 24 DITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADVV 83
Query: 908 SLRRKIGLVQQEPALFSTTIYENIKYGNEDASEIELMKATKAANA------HGFISRMPE 961
+LRRKIG+V Q P F +IYEN+ YG I K K + G + + +
Sbjct: 84 ALRRKIGMVFQRPNPFPKSIYENVAYG----PRIHGEKNKKTLDTIVEKSLKG--AALWD 137
Query: 962 GYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLME 1021
+ + D + LSGGQ+QR+ IAR + NP ++L+DE SALD + I++ ++ L +
Sbjct: 138 EVKDRLHDSALSLSGGQQQRLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKK 197
Query: 1022 GRTTIMVAHRLS-TIRNADKIAVLQQGKVAEIGSHEQLLRKEN 1063
T I+V H + R +D + GK+ E Q+ +
Sbjct: 198 EYTVIIVTHNMQQAARVSDYTGFMYLGKLIEFDKTTQIFENPH 240
|
Length = 253 |
| >gnl|CDD|213258 cd03291, ABCC_CFTR1, ATP-binding cassette domain of the cystic fibrosis transmembrane regulator, subfamily C | Back alignment and domain information |
|---|
Score = 107 bits (269), Expect = 1e-25
Identities = 66/221 (29%), Positives = 110/221 (49%), Gaps = 19/221 (8%)
Query: 222 VFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLRE 281
V +N+N ++ G+ A G +GSGK++++ ++ EP+ GKI G S Q W+
Sbjct: 52 VLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSGRISFSSQFSWI-- 109
Query: 282 QMGLVSQEPALFATSIANNILLGKEDASMD--RVIEAAKAANAHSFVEGLPDGYQTQVGE 339
+I NI+ G S D R KA + P+ T +GE
Sbjct: 110 -----------MPGTIKENIIFG---VSYDEYRYKSVVKACQLEEDITKFPEKDNTVLGE 155
Query: 340 GGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESEL-IVQRALEKIMSNRTTIVV 398
GG LSGGQ+ RI++ARAV ++ + LLD LD +E I + + K+M+N+T I+V
Sbjct: 156 GGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEKEIFESCVCKLMANKTRILV 215
Query: 399 AHRLSTVRDVDTIMVLKNGQVVESGTHVDLISKGGEYAALV 439
++ ++ D I++L G GT +L S ++++ +
Sbjct: 216 TSKMEHLKKADKILILHEGSSYFYGTFSELQSLRPDFSSKL 256
|
The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. Length = 282 |
| >gnl|CDD|184594 PRK14264, PRK14264, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 108 bits (271), Expect = 1e-25
Identities = 67/226 (29%), Positives = 115/226 (50%), Gaps = 21/226 (9%)
Query: 854 ENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPIS-----GTVLIDGYDI--RTLNL 906
+ +++ + A++G SG GKST + + R D I G+V +DG DI +NL
Sbjct: 62 KGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVNL 121
Query: 907 RSLRRKIGLVQQEPALFSTTIYENIKYGNEDASEIE------LMKATKAANAHGFISR-- 958
LR+++G+V Q P F +I ENI YG +I L+ + R
Sbjct: 122 VELRKRVGMVFQSPNPFPKSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSL 181
Query: 959 ----MPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQE 1014
+ + + D + LSGGQ+QR+ IAR + +P ++L+DE SALD + + I++
Sbjct: 182 RQAALWDEVNDRLDDNALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIED 241
Query: 1015 ALDKLMEGRTTIMVAHRL-STIRNADKIAV-LQQGKVAEIGSHEQL 1058
+++L E T ++V H + R +D+ AV L G++ E +++
Sbjct: 242 LIEELAEEYTVVVVTHNMQQAARISDQTAVFLTGGELVEYDDTDKI 287
|
Length = 305 |
| >gnl|CDD|237453 PRK13633, PRK13633, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 107 bits (269), Expect = 1e-25
Identities = 66/234 (28%), Positives = 110/234 (47%), Gaps = 26/234 (11%)
Query: 206 IEFSEVCFAY----PSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTS 261
I+ V + Y S + +++N V G+ +G +GSGKSTI + L P+
Sbjct: 5 IKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSE 64
Query: 262 GKILLDGHDLKSLQLKW-LREQMGLVSQEP--ALFATSIANNILLGKEDASMD------R 312
GK+ +DG D + W +R + G+V Q P + AT + ++ G E+ + R
Sbjct: 65 GKVYVDGLDTSDEENLWDIRNKAGMVFQNPDNQIVATIVEEDVAFGPENLGIPPEEIRER 124
Query: 313 VIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATS 372
V E+ K + + P LSGGQKQR+AIA + P+ ++ DE T+
Sbjct: 125 VDESLKKVGMYEYRRHAPH-----------LLSGGQKQRVAIAGILAMRPECIIFDEPTA 173
Query: 373 ALDAESELIVQRALEKIMSNR--TTIVVAHRLSTVRDVDTIMVLKNGQVVESGT 424
LD V ++++ T I++ H + + D I+V+ +G+VV GT
Sbjct: 174 MLDPSGRREVVNTIKELNKKYGITIILITHYMEEAVEADRIIVMDSGKVVMEGT 227
|
Length = 280 |
| >gnl|CDD|184590 PRK14249, PRK14249, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 106 bits (266), Expect = 1e-25
Identities = 74/241 (30%), Positives = 123/241 (51%), Gaps = 22/241 (9%)
Query: 205 QIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSG-- 262
+I+ V F Y H V +N+N + A +GPSG GKST++ + R+ + SG
Sbjct: 4 KIKIRGVNFFY--HKHQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGAR 61
Query: 263 ---KILLDGHDLKS--LQLKWLREQMGLVSQEPALFATSIANNILLGKE------DASMD 311
+LLD ++ S L + LR+++G+V Q+P F SI +N+ G + +D
Sbjct: 62 LEGAVLLDNENIYSPNLDVVNLRKRVGMVFQQPNPFPKSIFDNVAFGPRMLGTTAQSRLD 121
Query: 312 RVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEAT 371
V+E + A L D + + + G LSGGQ+QR+ IAR + P+++L+DE
Sbjct: 122 EVVEKSLRQAA------LWDEVKDNLHKSGLALSGGQQQRLCIARVLAIEPEVILMDEPC 175
Query: 372 SALDAESELIVQRALEKIMSNRTTIVVAHRL-STVRDVDTIMVLKNGQVVESGTHVDLIS 430
SALD S + ++ ++++ N T +V H + R D L G +VE G ++ S
Sbjct: 176 SALDPVSTMRIEELMQELKQNYTIAIVTHNMQQAARASDWTGFLLTGDLVEYGRTGEIFS 235
Query: 431 K 431
+
Sbjct: 236 R 236
|
Length = 251 |
| >gnl|CDD|172734 PRK14246, PRK14246, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 107 bits (267), Expect = 1e-25
Identities = 75/238 (31%), Positives = 121/238 (50%), Gaps = 26/238 (10%)
Query: 839 NVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRF---YDP---ISG 892
N+S Y D I +++ +K+ ++G SGSGKST++ ++ R YD + G
Sbjct: 12 NISRLYLYINDKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDG 71
Query: 893 TVLIDGYDIRTLNLRSLRRKIGLVQQEPALFS-TTIYENIKY-----GNEDASEIELMKA 946
VL G DI ++ LR+++G+V Q+P F +IY+NI Y G ++ EI+ +
Sbjct: 72 KVLYFGKDIFQIDAIKLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIVE 131
Query: 947 TKAANAHGFISRMPEGYQSHVGDR----GVQLSGGQKQRVAIARAILKNPSILLLDEATS 1002
G V DR QLSGGQ+QR+ IARA+ P +LL+DE TS
Sbjct: 132 E---------CLRKVGLWKEVYDRLNSPASQLSGGQQQRLTIARALALKPKVLLMDEPTS 182
Query: 1003 ALDTASENLIQEALDKLMEGRTTIMVAHRLSTI-RNADKIAVLQQGKVAEIGSHEQLL 1059
+D + I++ + +L ++V+H + R AD +A L G++ E GS ++
Sbjct: 183 MIDIVNSQAIEKLITELKNEIAIVIVSHNPQQVARVADYVAFLYNGELVEWGSSNEIF 240
|
Length = 257 |
| >gnl|CDD|184205 PRK13646, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 107 bits (268), Expect = 2e-25
Identities = 78/263 (29%), Positives = 137/263 (52%), Gaps = 31/263 (11%)
Query: 835 IELRNVSFKYPVRPDITIFE-----NLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDP 889
I NVS+ Y T +E ++N + G+ A+VGQ+GSGKST+I + P
Sbjct: 3 IRFDNVSYTYQ---KGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKP 59
Query: 890 ISGTVLIDGYDI----RTLNLRSLRRKIGLVQQ--EPALFSTTIYENIKYGNED-ASEIE 942
+GTV +D I + +R +R++IG+V Q E LF T+ I +G ++ ++
Sbjct: 60 TTGTVTVDDITITHKTKDKYIRPVRKRIGMVFQFPESQLFEDTVEREIIFGPKNFKMNLD 119
Query: 943 LMKATKAANAHGFISRMPEGYQSHVGDRG-VQLSGGQKQRVAIARAILKNPSILLLDEAT 1001
+K AH + M G+ V + Q+SGGQ +++AI + NP I++LDE T
Sbjct: 120 EVKN----YAHRLL--MDLGFSRDVMSQSPFQMSGGQMRKIAIVSILAMNPDIIVLDEPT 173
Query: 1002 SALDTASENLIQEALDKLM--EGRTTIMVAHRLSTI-RNADKIAVLQQGKVAEIGSHEQL 1058
+ LD S+ + L L E +T I+V+H ++ + R AD++ V+++G + S ++L
Sbjct: 174 AGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMNEVARYADEVIVMKEGSIVSQTSPKEL 233
Query: 1059 LRKENGIYK------QLIRLQQD 1075
+ + + ++++LQ D
Sbjct: 234 FKDKKKLADWHIGLPEIVQLQYD 256
|
Length = 286 |
| >gnl|CDD|234152 TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 108 bits (272), Expect = 2e-25
Identities = 72/207 (34%), Positives = 111/207 (53%), Gaps = 17/207 (8%)
Query: 225 NLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMG 284
+++ SV G+ +GPSG GK+T++ ++ L T+G I G D+ L + + G
Sbjct: 22 DISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQ--KRDYG 79
Query: 285 LVSQEPALFAT-SIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQ 343
+V Q ALF ++A+NI G ++ M R A + A V GLP + G Q
Sbjct: 80 IVFQSYALFPNLTVADNIAYGLKNRGMGRAEVAERVAELLDLV-GLPGSERKYPG----Q 134
Query: 344 LSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMS--NRTTIVVAH- 400
LSGGQ+QR+A+ARA+ +P +LLLDE SALDA ++ + ++ TTI+V H
Sbjct: 135 LSGGQQQRVALARALATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHD 194
Query: 401 ---RLSTVRDVDTIMVLKNGQVVESGT 424
LS D I+V+ +G + + GT
Sbjct: 195 QEEALSM---ADRIVVMNHGVIEQVGT 218
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely [Transport and binding proteins, Amino acids, peptides and amines]. Length = 353 |
| >gnl|CDD|183226 PRK11607, potG, putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 109 bits (274), Expect = 2e-25
Identities = 77/248 (31%), Positives = 130/248 (52%), Gaps = 30/248 (12%)
Query: 823 PASKEVTEIKGNIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISL 882
P +K + +E+RN++ + + + ++++L + G A++G SG GKST++ +
Sbjct: 8 PQAKTRKALTPLLEIRNLTKSFDGQHAV---DDVSLTIYKGEIFALLGASGCGKSTLLRM 64
Query: 883 VMRFYDPISGTVLIDGYDIRTLNLRSLRRKIGLVQQEPALFS-TTIYENIKYG------- 934
+ F P +G +++DG D+ ++ +R I ++ Q ALF T+ +NI +G
Sbjct: 65 LAGFEQPTAGQIMLDGVDLS--HVPPYQRPINMMFQSYALFPHMTVEQNIAFGLKQDKLP 122
Query: 935 -NEDASEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPS 993
E AS + M + F R P QLSGGQ+QRVA+AR++ K P
Sbjct: 123 KAEIASRVNEMLGL--VHMQEFAKRKPH-----------QLSGGQRQRVALARSLAKRPK 169
Query: 994 ILLLDEATSALDTASENLIQ-EALDKLME-GRTTIMVAH-RLSTIRNADKIAVLQQGKVA 1050
+LLLDE ALD + +Q E +D L G T +MV H + + A +IA++ +GK
Sbjct: 170 LLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQEEAMTMAGRIAIMNRGKFV 229
Query: 1051 EIGSHEQL 1058
+IG E++
Sbjct: 230 QIGEPEEI 237
|
Length = 377 |
| >gnl|CDD|213235 cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of the bacitracin-resistance transporter | Back alignment and domain information |
|---|
Score = 104 bits (262), Expect = 2e-25
Identities = 59/210 (28%), Positives = 107/210 (50%), Gaps = 24/210 (11%)
Query: 222 VFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLRE 281
V ++++ V G+ + F+GP+G+GK+T + ++ L +P SG+I DG +
Sbjct: 15 VLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKNIEAL--R 72
Query: 282 QMGLVSQEPALFATSIA-NNI-----LLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQT 335
++G + + P + A N+ LLG +D V++ V GL D +
Sbjct: 73 RIGALIEAPGFYPNLTARENLRLLARLLGIRKKRIDEVLD----------VVGLKDSAKK 122
Query: 336 QVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNRTT 395
+V S G KQR+ IA A+L NP +L+LDE T+ LD + ++ + + T
Sbjct: 123 KVK----GFSLGMKQRLGIALALLGNPDLLILDEPTNGLDPDGIKELRELILSLRDQGIT 178
Query: 396 IVVA-HRLSTVRDV-DTIMVLKNGQVVESG 423
++++ H LS ++ V D I ++ G+++E G
Sbjct: 179 VLISSHLLSEIQKVADRIGIINKGKLIEEG 208
|
The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. Length = 208 |
| >gnl|CDD|237456 PRK13641, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 107 bits (268), Expect = 2e-25
Identities = 81/252 (32%), Positives = 126/252 (50%), Gaps = 34/252 (13%)
Query: 835 IELRNVSFKY-PVRPDITI-FENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISG 892
I+ NV + Y P P +N++ ++ G +A+VG +GSGKST++ P SG
Sbjct: 3 IKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSG 62
Query: 893 TVLIDGYDIR----TLNLRSLRRKIGLVQQ--EPALFSTTIYENIKYG------NEDASE 940
T+ I GY I NL+ LR+K+ LV Q E LF T+ +++++G +ED ++
Sbjct: 63 TITIAGYHITPETGNKNLKKLRKKVSLVFQFPEAQLFENTVLKDVEFGPKNFGFSEDEAK 122
Query: 941 IELMKATKAAN-AHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDE 999
+ +K K + IS+ P +LSGGQ +RVAIA + P IL LDE
Sbjct: 123 EKALKWLKKVGLSEDLISKSP-----------FELSGGQMRRVAIAGVMAYEPEILCLDE 171
Query: 1000 ATSALDTAS-ENLIQEALDKLMEGRTTIMVAHRLSTIRN-ADKIAVLQQGKV------AE 1051
+ LD + ++Q D G T I+V H + + AD + VL+ GK+ E
Sbjct: 172 PAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMDDVAEYADDVLVLEHGKLIKHASPKE 231
Query: 1052 IGSHEQLLRKEN 1063
I S ++ L+K
Sbjct: 232 IFSDKEWLKKHY 243
|
Length = 287 |
| >gnl|CDD|188098 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Score = 113 bits (284), Expect = 3e-25
Identities = 71/217 (32%), Positives = 116/217 (53%), Gaps = 23/217 (10%)
Query: 226 LNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGL 285
+ FS+ G A VG G GKS+++S + + G + + G +
Sbjct: 657 ITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKG-------------SVAY 703
Query: 286 VSQEPALFATSIANNILLGK--EDASMDRVIEA-AKAANAHSFVEGLPDGYQTQVGEGGT 342
V Q+ + S+ NIL GK + +V+EA A + +E LP G +T++GE G
Sbjct: 704 VPQQAWIQNDSLRENILFGKALNEKYYQQVLEACALLPD----LEILPSGDRTEIGEKGV 759
Query: 343 QLSGGQKQRIAIARAVLRNPKILLLDEATSALDAE-SELIVQRAL--EKIMSNRTTIVVA 399
LSGGQKQR+++ARAV N I L D+ SA+DA + I + + E ++ N+T I+V
Sbjct: 760 NLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFEHVIGPEGVLKNKTRILVT 819
Query: 400 HRLSTVRDVDTIMVLKNGQVVESGTHVDLISKGGEYA 436
H +S + VD I+V+ G++ E G++ +L+ + G +A
Sbjct: 820 HGISYLPQVDVIIVMSGGKISEMGSYQELLQRDGAFA 856
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved [Transport and binding proteins, Other]. Length = 1522 |
| >gnl|CDD|182331 PRK10247, PRK10247, putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Score = 104 bits (262), Expect = 3e-25
Identities = 63/216 (29%), Positives = 110/216 (50%), Gaps = 17/216 (7%)
Query: 835 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTV 894
++L+NV + I N++ + AG + G SG GKST++ +V P SGT+
Sbjct: 8 LQLQNVGYLAGDAK---ILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTL 64
Query: 895 LIDGYDIRTLNLRSLRRKIGLVQQEPALFSTTIYENIKYGNEDASEIELMKATKAANAHG 954
L +G DI TL R+++ Q P LF T+Y+N+ + + ++
Sbjct: 65 LFEGEDISTLKPEIYRQQVSYCAQTPTLFGDTVYDNLIFPWQIRNQQPDPAIFLD----- 119
Query: 955 FISR--MPEGYQSHVGDRGV-QLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENL 1011
+ R +P+ + + + +LSGG+KQR+++ R + P +LLLDE TSALD ++++
Sbjct: 120 DLERFALPD----TILTKNIAELSGGEKQRISLIRNLQFMPKVLLLDEITSALDESNKHN 175
Query: 1012 IQEALDKLME--GRTTIMVAHRLSTIRNADKIAVLQ 1045
+ E + + + + V H I +ADK+ LQ
Sbjct: 176 VNEIIHRYVREQNIAVLWVTHDKDEINHADKVITLQ 211
|
Length = 225 |
| >gnl|CDD|213236 cd03269, ABC_putative_ATPase, ATP-binding cassette domain of an uncharacterized transporter | Back alignment and domain information |
|---|
Score = 104 bits (262), Expect = 3e-25
Identities = 54/217 (24%), Positives = 108/217 (49%), Gaps = 28/217 (12%)
Query: 218 RPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSL--- 274
++++FSV+ G+ F +GP+G+GK+T I M+ + P SG++L DG L
Sbjct: 11 GRVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDIAARN 70
Query: 275 QLKWLREQMGLVS----QEPALFATSIANNILLGKEDA--SMDRVIEAAKAANAHSFVEG 328
++ +L E+ GL + ++ + L KE+A +D +E + +
Sbjct: 71 RIGYLPEERGLYPKMKVIDQLVYLAQLKG---LKKEEARRRIDEWLERLELSE------- 120
Query: 329 LPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEK 388
Y + E +LS G +Q++ AV+ +P++L+LDE S LD + +++ + +
Sbjct: 121 ----YANKRVE---ELSKGNQQKVQFIAAVIHDPELLILDEPFSGLDPVNVELLKDVIRE 173
Query: 389 IMSNRTTIV-VAHRLSTVRDV-DTIMVLKNGQVVESG 423
+ T++ H++ V ++ D +++L G+ V G
Sbjct: 174 LARAGKTVILSTHQMELVEELCDRVLLLNKGRAVLYG 210
|
This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 210 |
| >gnl|CDD|132050 TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 105 bits (264), Expect = 3e-25
Identities = 77/236 (32%), Positives = 120/236 (50%), Gaps = 25/236 (10%)
Query: 206 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKIL 265
+ FS+V + V + LNFSV AG+ A +GPSGSGKSTI+ ++ L G+I
Sbjct: 1 VRFSDVTKRF--GILTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQ 58
Query: 266 LDGHDLKSLQ-------------LKWLREQMGLVSQEPALFA-TSIANNILLGKEDASMD 311
++G L + L+ +R ++G+V Q LF ++ +N+ A +
Sbjct: 59 VEGEQLYHMPGRNGPLVPADEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTE----APV- 113
Query: 312 RVIEAAKAANAHSFVEGLPD-GYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEA 370
V+ A+A +E L G + QLSGGQ+QR+AIARA+ PK++L DE
Sbjct: 114 LVLGMARAEAEKRAMELLDMVGLADKADHMPAQLSGGQQQRVAIARALAMRPKVMLFDEV 173
Query: 371 TSALDAESELIVQRALEKIMS--NRTTIVVAHRLSTVRDV-DTIMVLKNGQVVESG 423
TSALD E V + ++ S + T ++V H + R+ D + G++VE G
Sbjct: 174 TSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMGFAREFADRVCFFDKGRIVEQG 229
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. Length = 252 |
| >gnl|CDD|223488 COG0411, LivG, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 105 bits (265), Expect = 3e-25
Identities = 59/225 (26%), Positives = 109/225 (48%), Gaps = 38/225 (16%)
Query: 225 NLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMG 284
+++ V G+ +GP+G+GK+T+ +++ Y+P+SG ++ G D+ L ++G
Sbjct: 22 DVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPH-RIARLG 80
Query: 285 LVS--QEPALFAT-SIANNILLG------------------KEDASMDRVIEAAKAANAH 323
+ Q LF ++ N+ +G +E + +R E +
Sbjct: 81 IARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLE----- 135
Query: 324 SFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDA-ESELIV 382
FV GL + G LS GQ++R+ IARA+ PK+LLLDE + L+ E+E +
Sbjct: 136 -FV-GLGELADRPAGN----LSYGQQRRLEIARALATQPKLLLLDEPAAGLNPEETEELA 189
Query: 383 QRALEKI--MSNRTTIVVAHRLSTVRDV-DTIMVLKNGQVVESGT 424
+ + ++ T +++ H + V + D I+VL G+V+ GT
Sbjct: 190 EL-IRELRDRGGVTILLIEHDMKLVMGLADRIVVLNYGEVIAEGT 233
|
Length = 250 |
| >gnl|CDD|183063 PRK11264, PRK11264, putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Score = 105 bits (264), Expect = 3e-25
Identities = 71/221 (32%), Positives = 108/221 (48%), Gaps = 27/221 (12%)
Query: 220 HMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKI-----LLDGHDLKSL 274
V ++ V G+ A +GPSGSGK+T++ + L +P +G I +D S
Sbjct: 16 QTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQ 75
Query: 275 Q---LKWLREQMGLVSQEPALFA-TSIANNILLGK---EDASMDRVIEAAKAANAHSFVE 327
Q ++ LR+ +G V Q LF ++ NI+ G + + A+ A +
Sbjct: 76 QKGLIRQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATARARELLAKVGLA 135
Query: 328 GLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALE 387
G Y + LSGGQ+QR+AIARA+ P+++L DE TSALD E +V L
Sbjct: 136 GKETSYPRR-------LSGGQQQRVAIARALAMRPEVILFDEPTSALDPE---LVGEVLN 185
Query: 388 KIMS----NRTTIVVAHRLSTVRDV-DTIMVLKNGQVVESG 423
I RT ++V H +S RDV D + + G++VE G
Sbjct: 186 TIRQLAQEKRTMVIVTHEMSFARDVADRAIFMDQGRIVEQG 226
|
Length = 250 |
| >gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain | Back alignment and domain information |
|---|
Score = 102 bits (256), Expect = 4e-25
Identities = 59/214 (27%), Positives = 88/214 (41%), Gaps = 59/214 (27%)
Query: 207 EFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILL 266
E + F Y R +N++ ++ AG+ A VGP+G SGK L
Sbjct: 1 EIENLSFRYGGRT--ALDNVSLTLKAGEIVALVGPNG-----------------SGKSTL 41
Query: 267 DGHDLKSLQLKWLREQMGLVSQEPALFATSIANNILLGKEDASMDRVIEAAKAANAHSFV 326
L+++ A + IL+ +D I +
Sbjct: 42 ----LRAI----------------AGLLKPTSGEILIDGKD------IAKLPLEELRRRI 75
Query: 327 EGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRAL 386
+P QLSGGQ+QR+A+ARA+L NP +LLLDE TS LD S + L
Sbjct: 76 GYVP------------QLSGGQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLELL 123
Query: 387 EKIM-SNRTTIVVAHRLSTVRDV-DTIMVLKNGQ 418
++ RT I+V H D ++VLK+G+
Sbjct: 124 RELAEEGRTVIIVTHDPELAELAADRVIVLKDGK 157
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157 |
| >gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 112 bits (283), Expect = 4e-25
Identities = 72/228 (31%), Positives = 119/228 (52%), Gaps = 2/228 (0%)
Query: 203 AGQIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSG 262
AG + F V Y +V ++F + + VG +GSGKST++ R+ E G
Sbjct: 1306 AGSLVFEGVQMRYREGLPLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGG 1365
Query: 263 KILLDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNILLGKEDASMDRVIEAAKAANA 322
+I ++G ++ + L+ LR Q ++ Q+P LF ++ N+ E AS V A +
Sbjct: 1366 EIRVNGREIGAYGLRELRRQFSMIPQDPVLFDGTVRQNVDPFLE-ASSAEVWAALELVGL 1424
Query: 323 HSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVL-RNPKILLLDEATSALDAESELI 381
V +G ++V EGG+ S GQ+Q + +ARA+L + +L+DEAT+ +D +
Sbjct: 1425 RERVASESEGIDSRVLEGGSNYSVGQRQLMCMARALLKKGSGFILMDEATANIDPALDRQ 1484
Query: 382 VQRALEKIMSNRTTIVVAHRLSTVRDVDTIMVLKNGQVVESGTHVDLI 429
+Q + S T I +AHRL TV D I+V+ +G V E G+ +L+
Sbjct: 1485 IQATVMSAFSAYTVITIAHRLHTVAQYDKIIVMDHGAVAEMGSPRELV 1532
|
Length = 1560 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 110 bits (277), Expect = 5e-25
Identities = 69/231 (29%), Positives = 112/231 (48%), Gaps = 42/231 (18%)
Query: 217 SRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSL-- 274
+ ++ ++ G+T VG SGSGKST+ + RL G+I DG D+ L
Sbjct: 297 VDHLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPS-QGEIRFDGQDIDGLSR 355
Query: 275 -QLKWLREQMGLVSQEPALFAT-----SIANNILLG--------KEDASMDRVIEAAKAA 320
+++ LR +M +V Q+P + + ++ I G RVIEA +
Sbjct: 356 KEMRPLRRRMQVVFQDP--YGSLSPRMTVGQIIEEGLRVHEPKLSAAERDQRVIEALEEV 413
Query: 321 NAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESEL 380
GL + SGGQ+QRIAIARA++ P+++LLDE TSALD
Sbjct: 414 -------GLD---PATRNRYPHEFSGGQRQRIAIARALILKPELILLDEPTSALD----R 459
Query: 381 IVQ-------RALEKIMSNRTTIVVAHRLSTVRDV-DTIMVLKNGQVVESG 423
VQ R L++ + + ++H L+ VR + ++V+++G++VE G
Sbjct: 460 SVQAQVLDLLRDLQQ-KHGLSYLFISHDLAVVRALCHRVIVMRDGKIVEQG 509
|
Length = 534 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 110 bits (277), Expect = 5e-25
Identities = 74/263 (28%), Positives = 123/263 (46%), Gaps = 38/263 (14%)
Query: 835 IELRNVSFKYPVR-PDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRF--YDPI- 890
+ +RN+S + + + ++ + AG +LA+VG+SGSGKS ++
Sbjct: 7 LSIRNLSVAFHQEGGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAA 66
Query: 891 --SGTVLIDGYDIRTLNLRSLRR----KIGLVQQEP--AL-----FSTTIYENIKY---- 933
SG++L DG D+ + R LR KIG++ QEP +L + E ++
Sbjct: 67 HPSGSILFDGEDLLAASERQLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLHRGL 126
Query: 934 GNEDASE--IELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKN 991
A +EL++ + P H +LSGGQ+QRV IA A+
Sbjct: 127 SRAAARARALELLELVGIPEPEKRLDAYP-----H------ELSGGQRQRVMIAMALANE 175
Query: 992 PSILLLDEATSALDTASENLIQEALDKLME--GRTTIMVAHRLSTIRN-ADKIAVLQQGK 1048
P +L+ DE T+ALD + I + L +L G + + H L +R AD++ V+Q G+
Sbjct: 176 PDLLIADEPTTALDVTVQAQILDLLKELQAELGMAILFITHDLGIVRKFADRVYVMQHGE 235
Query: 1049 VAEIGSHEQLLRKENGIY-KQLI 1070
+ E G+ E L Y ++L+
Sbjct: 236 IVETGTTETLFAAPQHPYTRKLL 258
|
Length = 534 |
| >gnl|CDD|184588 PRK14243, PRK14243, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 105 bits (263), Expect = 5e-25
Identities = 67/220 (30%), Positives = 110/220 (50%), Gaps = 21/220 (9%)
Query: 220 HMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYE--PT---SGKILLDGHDLKSL 274
+ +N+ + + AF+GPSG GKSTI+ RL + P GK+ G +L +
Sbjct: 23 FLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAP 82
Query: 275 QLK--WLREQMGLVSQEPALFATSIANNILLGKE----DASMDRVIEAA--KAANAHSFV 326
+ +R ++G+V Q+P F SI +NI G MD ++E + +AA
Sbjct: 83 DVDPVEVRRRIGMVFQKPNPFPKSIYDNIAYGARINGYKGDMDELVERSLRQAA------ 136
Query: 327 EGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRAL 386
L D + ++ + G LSGGQ+QR+ IARA+ P+++L+DE SALD S L ++ +
Sbjct: 137 --LWDEVKDKLKQSGLSLSGGQQQRLCIARAIAVQPEVILMDEPCSALDPISTLRIEELM 194
Query: 387 EKIMSNRTTIVVAHRLSTVRDVDTIMVLKNGQVVESGTHV 426
++ T I+V H + V + N ++ E G
Sbjct: 195 HELKEQYTIIIVTHNMQQAARVSDMTAFFNVELTEGGGRY 234
|
Length = 264 |
| >gnl|CDD|106587 PRK13644, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 105 bits (263), Expect = 5e-25
Identities = 79/232 (34%), Positives = 119/232 (51%), Gaps = 17/232 (7%)
Query: 835 IELRNVSFKYPVRPDIT-IFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGT 893
I L NVS+ YP D T EN+NL + G + ++G++GSGKST+ + P G
Sbjct: 2 IRLENVSYSYP---DGTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGK 58
Query: 894 VLIDGYDIRTLN-LRSLRRKIGLVQQEP--ALFSTTIYENIKYGNEDA--SEIELMKATK 948
VL+ G D + L+ +R+ +G+V Q P T+ E++ +G E+ IE+ K
Sbjct: 59 VLVSGIDTGDFSKLQGIRKLVGIVFQNPETQFVGRTVEEDLAFGPENLCLPPIEIRKRVD 118
Query: 949 AANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTAS 1008
A A + E Y+ LSGGQ Q VA+A + P L+ DE TS LD S
Sbjct: 119 RALAEIGL----EKYRHRSPK---TLSGGQGQCVALAGILTMEPECLIFDEVTSMLDPDS 171
Query: 1009 ENLIQEALDKLME-GRTTIMVAHRLSTIRNADKIAVLQQGKVAEIGSHEQLL 1059
+ E + KL E G+T + + H L + +AD+I V+ +GK+ G E +L
Sbjct: 172 GIAVLERIKKLHEKGKTIVYITHNLEELHDADRIIVMDRGKIVLEGEPENVL 223
|
Length = 274 |
| >gnl|CDD|132050 TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 104 bits (262), Expect = 6e-25
Identities = 76/257 (29%), Positives = 124/257 (48%), Gaps = 52/257 (20%)
Query: 835 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPIS-GT 893
+ +V+ ++ +T+ + LN V+AG +A++G SGSGKST++ ++M +PI G
Sbjct: 1 VRFSDVTKRFG---ILTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTL-EPIDEGQ 56
Query: 894 VLIDG---YDIRTLN----------LRSLRRKIGLVQQEPALFS-TTIYENI-------- 931
+ ++G Y + N LR +R KIG+V Q LF T+ +N+
Sbjct: 57 IQVEGEQLYHMPGRNGPLVPADEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVL 116
Query: 932 --KYGNEDASEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAIL 989
+ +EL+ A+ MP QLSGGQ+QRVAIARA+
Sbjct: 117 GMARAEAEKRAMELLDMVGLADK---ADHMP-----------AQLSGGQQQRVAIARALA 162
Query: 990 KNPSILLLDEATSALDTASENLIQEALDKLME-----GRTTIMVAHRLSTIRN-ADKIAV 1043
P ++L DE TSALD L+ E L+ + T ++V H + R AD++
Sbjct: 163 MRPKVMLFDEVTSALDP---ELVGEVLNVIRRLASEHDLTMLLVTHEMGFAREFADRVCF 219
Query: 1044 LQQGKVAEIGSHEQLLR 1060
+G++ E G +++ R
Sbjct: 220 FDKGRIVEQGKPDEIFR 236
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. Length = 252 |
| >gnl|CDD|172745 PRK14257, PRK14257, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 106 bits (266), Expect = 6e-25
Identities = 71/231 (30%), Positives = 120/231 (51%), Gaps = 12/231 (5%)
Query: 203 AGQIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTII---SMVQRLYEP 259
A E F Y +R V +LN + K AF+GPSG GKST + + + L E
Sbjct: 78 ANVFEIRNFNFWYMNRTKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEG 137
Query: 260 TS--GKILLDGHDLKSLQLKWL--REQMGLVSQEPALFATSIANNILLGKEDASMD--RV 313
TS G+I G + +S ++ L R ++G+V Q+P F SI +N+ G + ++ ++
Sbjct: 138 TSHEGEIYFLGTNTRSKKISSLELRTRIGMVFQKPTPFEMSIFDNVAYGPRNNGINDRKI 197
Query: 314 IEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSA 373
+E + S L D + + + G LSGGQ+QR+ IARA+ P++LL+DE TSA
Sbjct: 198 LEKIVEKSLKS--AALWDEVKDDLDKAGNALSGGQQQRLCIARAIALEPEVLLMDEPTSA 255
Query: 374 LDAESELIVQRALEKIMSNRTTIVVAHRLSTVRDV-DTIMVLKNGQVVESG 423
LD + ++ + ++ + I+V H ++ + + D + G + E+G
Sbjct: 256 LDPIATAKIEELILELKKKYSIIIVTHSMAQAQRISDETVFFYQGWIEEAG 306
|
Length = 329 |
| >gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Score = 112 bits (281), Expect = 7e-25
Identities = 69/242 (28%), Positives = 121/242 (50%), Gaps = 9/242 (3%)
Query: 185 NSHSSERPGDDGITLPKLA-------GQIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFA 237
+ + A GQ++ + Y V ++L+FSV+ G+
Sbjct: 1190 GGGGKYQLSTVLVIENPHAQKCWPSGGQMDVQGLTAKYTEAGRAVLQDLSFSVEGGQRVG 1249
Query: 238 FVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGLVSQEPALFATSI 297
+G +GSGKST++S + RL T G+I +DG S+ L+ R+ G++ Q+ +F+ +
Sbjct: 1250 LLGRTGSGKSTLLSALLRLLS-TEGEIQIDGVSWNSVTLQTWRKAFGVIPQKVFIFSGTF 1308
Query: 298 ANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARA 357
N L E S + + + A+ S +E PD + +GG LS G KQ + +AR+
Sbjct: 1309 RKN-LDPYEQWSDEEIWKVAEEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQLMCLARS 1367
Query: 358 VLRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRDVDTIMVLKNG 417
+L KILLLDE ++ LD + I+++ L++ SN T I+ HR+ + + +V++
Sbjct: 1368 ILSKAKILLLDEPSAHLDPVTLQIIRKTLKQSFSNCTVILSEHRVEALLECQQFLVIEGS 1427
Query: 418 QV 419
V
Sbjct: 1428 SV 1429
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se [Transport and binding proteins, Anions]. Length = 1490 |
| >gnl|CDD|184590 PRK14249, PRK14249, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 103 bits (259), Expect = 1e-24
Identities = 67/235 (28%), Positives = 121/235 (51%), Gaps = 11/235 (4%)
Query: 835 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGT- 893
I++R V+F Y + +N+N+ + A++G SG GKST++ + R D +SG
Sbjct: 5 IKIRGVNFFYHKH---QVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGAR 61
Query: 894 ----VLIDGYDIRTLNLR--SLRRKIGLVQQEPALFSTTIYENIKYGNEDASEIELMKAT 947
VL+D +I + NL +LR+++G+V Q+P F +I++N+ +G +
Sbjct: 62 LEGAVLLDNENIYSPNLDVVNLRKRVGMVFQQPNPFPKSIFDNVAFGPRMLGTTAQSRLD 121
Query: 948 KAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTA 1007
+ + + + + ++ G+ LSGGQ+QR+ IAR + P ++L+DE SALD
Sbjct: 122 EVVEKSLRQAALWDEVKDNLHKSGLALSGGQQQRLCIARVLAIEPEVILMDEPCSALDPV 181
Query: 1008 SENLIQEALDKLMEGRTTIMVAHRL-STIRNADKIAVLQQGKVAEIGSHEQLLRK 1061
S I+E + +L + T +V H + R +D L G + E G ++ +
Sbjct: 182 STMRIEELMQELKQNYTIAIVTHNMQQAARASDWTGFLLTGDLVEYGRTGEIFSR 236
|
Length = 251 |
| >gnl|CDD|172734 PRK14246, PRK14246, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 103 bits (259), Expect = 1e-24
Identities = 65/217 (29%), Positives = 113/217 (52%), Gaps = 8/217 (3%)
Query: 222 VFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYE------PTSGKILLDGHDLKSLQ 275
+ +++ + F +GPSGSGKST++ ++ RL E GK+L G D+ +
Sbjct: 25 ILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQID 84
Query: 276 LKWLREQMGLVSQEPALFA-TSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQ 334
LR+++G+V Q+P F SI +NI + + E K GL
Sbjct: 85 AIKLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEVY 144
Query: 335 TQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNRT 394
++ +QLSGGQ+QR+ IARA+ PK+LL+DE TS +D + +++ + ++ +
Sbjct: 145 DRLNSPASQLSGGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKNEIA 204
Query: 395 TIVVAHRLSTV-RDVDTIMVLKNGQVVESGTHVDLIS 430
++V+H V R D + L NG++VE G+ ++ +
Sbjct: 205 IVIVSHNPQQVARVADYVAFLYNGELVEWGSSNEIFT 241
|
Length = 257 |
| >gnl|CDD|237457 PRK13647, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 104 bits (262), Expect = 1e-24
Identities = 78/266 (29%), Positives = 134/266 (50%), Gaps = 35/266 (13%)
Query: 835 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTV 894
IE+ ++ F+Y + + L+L + G A++G +G+GKST++ + Y P G V
Sbjct: 5 IEVEDLHFRY--KDGTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRV 62
Query: 895 LIDGYDIRTLNLRSLRRKIGLVQQEP--ALFSTTIYENIKYGNE----DASEIE--LMKA 946
+ G ++ N + +R K+GLV Q+P +FS+T+++++ +G D E+E + +A
Sbjct: 63 KVMGREVNAENEKWVRSKVGLVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEA 122
Query: 947 TKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDT 1006
KA F + P LS GQK+RVAIA + +P +++LDE + LD
Sbjct: 123 LKAVRMWDFRDKPPY-----------HLSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDP 171
Query: 1007 ASENLIQEALDKLMEGRTTIMVA-HRLS-TIRNADKIAVLQQGKVAEIGSHEQLLRK--- 1061
+ + E LD+L T++VA H + AD++ VL++G+V G L +
Sbjct: 172 RGQETLMEILDRLHNQGKTVIVATHDVDLAAEWADQVIVLKEGRVLAEGDKSLLTDEDIV 231
Query: 1062 -ENG--------IYKQLIRLQQDKNP 1078
+ G I++ L L Q K P
Sbjct: 232 EQAGLRLPLVAQIFEDLPELGQSKLP 257
|
Length = 274 |
| >gnl|CDD|237454 PRK13634, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 105 bits (263), Expect = 1e-24
Identities = 77/244 (31%), Positives = 120/244 (49%), Gaps = 27/244 (11%)
Query: 835 IELRNVSFKYPVRPDITIFENL-----NLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDP 889
I + V +Y + T FE N+ + +G +A++G +GSGKST++ + P
Sbjct: 3 ITFQKVEHRYQYK---TPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQP 59
Query: 890 ISGTVLIDGYDI----RTLNLRSLRRKIGLVQQ--EPALFSTTIYENIKYG--NEDASEI 941
SGTV I I + L+ LR+K+G+V Q E LF T+ ++I +G N SE
Sbjct: 60 TSGTVTIGERVITAGKKNKKLKPLRKKVGIVFQFPEHQLFEETVEKDICFGPMNFGVSEE 119
Query: 942 E-LMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEA 1000
+ KA + G +PE + +LSGGQ +RVAIA + P +L+LDE
Sbjct: 120 DAKQKAREMIELVG----LPEELLAR---SPFELSGGQMRRVAIAGVLAMEPEVLVLDEP 172
Query: 1001 TSALDTASENLIQEALDKLME--GRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGSHEQ 1057
T+ LD + E KL + G TT++V H + AD+I V+ +G V G+ +
Sbjct: 173 TAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSMEDAARYADQIVVMHKGTVFLQGTPRE 232
Query: 1058 LLRK 1061
+
Sbjct: 233 IFAD 236
|
Length = 290 |
| >gnl|CDD|182778 PRK10851, PRK10851, sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 106 bits (267), Expect = 1e-24
Identities = 78/236 (33%), Positives = 131/236 (55%), Gaps = 20/236 (8%)
Query: 834 NIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGT 893
+IE+ N+ K R + +++L + +G+ +A++G SGSGK+T++ ++ SG
Sbjct: 2 SIEIANIK-KSFGR--TQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGH 58
Query: 894 VLIDGYDIRTLNLRSLRRKIGLVQQEPALFS-TTIYENIKYGNEDASEIELMKATKAANA 952
+ G D+ L+ R RK+G V Q ALF T+++NI +G + ++ + NA
Sbjct: 59 IRFHGTDVSRLHARD--RKVGFVFQHYALFRHMTVFDNIAFG------LTVLPRRERPNA 110
Query: 953 HGF---ISRMPEGYQ-SHVGDR-GVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTA 1007
++++ E Q +H+ DR QLSGGQKQRVA+ARA+ P ILLLDE ALD
Sbjct: 111 AAIKAKVTQLLEMVQLAHLADRYPAQLSGGQKQRVALARALAVEPQILLLDEPFGALDAQ 170
Query: 1008 SENLIQEALDKLME--GRTTIMVAH-RLSTIRNADKIAVLQQGKVAEIGSHEQLLR 1060
++ L +L E T++ V H + + AD++ V+ QG + + G+ +Q+ R
Sbjct: 171 VRKELRRWLRQLHEELKFTSVFVTHDQEEAMEVADRVVVMSQGNIEQAGTPDQVWR 226
|
Length = 353 |
| >gnl|CDD|172739 PRK14251, PRK14251, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 103 bits (259), Expect = 1e-24
Identities = 72/228 (31%), Positives = 111/228 (48%), Gaps = 26/228 (11%)
Query: 849 DITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYD-----PISGTVLIDGYDI-- 901
+ ++L A++G SG GKST + + R D I+G + +G +I
Sbjct: 16 NYEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYG 75
Query: 902 RTLNLRSLRRKIGLVQQEPALFSTTIYENIKYGNEDASEIELMKATKAANAHGFISRMPE 961
++L LR+++G+V Q+P F ++Y+N+ YG +K + R+ E
Sbjct: 76 SKMDLVELRKEVGMVFQQPTPFPFSVYDNVAYG---------LKIAGVKDKELIDQRVEE 126
Query: 962 GYQSHV--------GDRGVQ-LSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLI 1012
+ DR Q SGGQ+QR+ IARA+ P ++LLDE TSALD S + I
Sbjct: 127 SLKQAAIWKETKDNLDRNAQAFSGGQQQRICIARALAVRPKVVLLDEPTSALDPISSSEI 186
Query: 1013 QEALDKLMEGRTTIMVAHRLSTI-RNADKIAVLQQGKVAEIGSHEQLL 1059
+E L +L T IMV H L R +D+ A L G + E G E++
Sbjct: 187 EETLMELKHQYTFIMVTHNLQQAGRISDQTAFLMNGDLIEAGPTEEMF 234
|
Length = 251 |
| >gnl|CDD|130256 TIGR01188, drrA, daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 105 bits (263), Expect = 1e-24
Identities = 64/219 (29%), Positives = 105/219 (47%), Gaps = 29/219 (13%)
Query: 856 LNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRKIGL 915
+N KV G +G +G+GK+T I ++ P SGT + GYD+ R +RR IG+
Sbjct: 12 VNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDV-VREPRKVRRSIGI 70
Query: 916 VQQEPALFST-TIYENIK-----YG-NEDASE---IELMKATKAANAHGFISRMPEGYQS 965
V Q ++ T EN++ YG +D +E EL++
Sbjct: 71 VPQYASVDEDLTGRENLEMMGRLYGLPKDEAEERAEELLE---------LFE------LG 115
Query: 966 HVGDRGV-QLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLME-GR 1023
DR V SGG ++R+ IA +++ P +L LDE T+ LD + I + + L E G
Sbjct: 116 EAADRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDYIRALKEEGV 175
Query: 1024 TTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGSHEQLLRK 1061
T ++ H + D+IA++ G++ G+ E+L R+
Sbjct: 176 TILLTTHYMEEADKLCDRIAIIDHGRIIAEGTPEELKRR 214
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc [Transport and binding proteins, Other]. Length = 302 |
| >gnl|CDD|172757 PRK14269, PRK14269, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 103 bits (257), Expect = 2e-24
Identities = 64/204 (31%), Positives = 111/204 (54%), Gaps = 5/204 (2%)
Query: 225 NLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTS---GKILLDGHDLKSLQLKWLRE 281
++N ++ K A +G SG GKST + R+ + + G + ++G D+K+ + LR+
Sbjct: 20 DINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRK 79
Query: 282 QMGLVSQEPALFATSIANNILLGKEDASMDRVIEAAKAANAHSFVE-GLPDGYQTQVGEG 340
+G+V Q+P +F SI NI + M + + +A + GL + + ++ +
Sbjct: 80 NVGMVFQQPNVFVKSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKDKLKQN 139
Query: 341 GTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAH 400
LSGGQ+QR+ IARA+ PK+LLLDE TSALD S +++ L+++ N + I+V H
Sbjct: 140 ALALSGGQQQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSHNLSMIMVTH 199
Query: 401 RLSTVRDV-DTIMVLKNGQVVESG 423
+ + V D G+++E G
Sbjct: 200 NMQQGKRVADYTAFFHLGELIEFG 223
|
Length = 246 |
| >gnl|CDD|130344 TIGR01277, thiQ, thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 102 bits (255), Expect = 2e-24
Identities = 69/213 (32%), Positives = 110/213 (51%), Gaps = 30/213 (14%)
Query: 220 HMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWL 279
H+ E + +V G+ A +GPSG+GKST+++++ EP SG I ++ L
Sbjct: 12 HLPME-FDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSH--TGLAPY 68
Query: 280 REQMGLVSQEPALFA-TSIANNILLG-----KEDA-SMDRVIEAAKAANAHSFVEGLPDG 332
+ + ++ QE LFA ++ NI LG K +A ++V++AA+ +++ LP+
Sbjct: 69 QRPVSMLFQENNLFAHLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQQVGIADYLDRLPE- 127
Query: 333 YQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESE-----LIVQRALE 387
QLSGGQ+QR+A+AR ++R ILLLDE SALD L+ Q E
Sbjct: 128 ----------QLSGGQRQRVALARCLVRPNPILLLDEPFSALDPLLREEMLALVKQLCSE 177
Query: 388 KIMSNRTTIVVAHRLS-TVRDVDTIMVLKNGQV 419
+ RT ++V H LS I V+ G++
Sbjct: 178 R---QRTLLMVTHHLSDARAIASQIAVVSQGKI 207
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found [Transport and binding proteins, Other]. Length = 213 |
| >gnl|CDD|172741 PRK14253, PRK14253, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 102 bits (257), Expect = 2e-24
Identities = 64/214 (29%), Positives = 112/214 (52%), Gaps = 19/214 (8%)
Query: 223 FENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYE-----PTSGKILLDGHDL-KSLQL 276
+++N + A + A +GPSG GKST++ + R+ + +GK+ +DG D+ ++ +
Sbjct: 19 LKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDV 78
Query: 277 KWLREQMGLVSQEPALFATSIANNILLG------KEDASMDRVIEAAKAANAHSFVEGLP 330
LR ++G+V Q+P F SI N+ G K+ +D V+E + A L
Sbjct: 79 ADLRIKVGMVFQKPNPFPMSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAA------LW 132
Query: 331 DGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIM 390
D + ++ LSGGQ+QR+ IAR + P ++L+DE TSALD + ++ +E++
Sbjct: 133 DEVKDRLKSHAFGLSGGQQQRLCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELK 192
Query: 391 SNRTTIVVAHRLSTVRDV-DTIMVLKNGQVVESG 423
N T ++V H + R + D G++VE
Sbjct: 193 KNYTIVIVTHSMQQARRISDRTAFFLMGELVEHD 226
|
Length = 249 |
| >gnl|CDD|172749 PRK14261, PRK14261, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 102 bits (257), Expect = 2e-24
Identities = 63/226 (27%), Positives = 107/226 (47%), Gaps = 24/226 (10%)
Query: 225 NLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTS-----GKILLDGHDLKSLQLK-- 277
++ S+ + A +GPSG GKST++ R+ + G IL +G ++
Sbjct: 24 DITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADVV 83
Query: 278 WLREQMGLVSQEPALFATSIANNILLG------KEDASMDRVIEAAKAANAHSFVEGLPD 331
LR ++G+V Q P F SI N+ G K ++D ++E + A L D
Sbjct: 84 ALRRKIGMVFQRPNPFPKSIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAA------LWD 137
Query: 332 GYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMS 391
+ ++ + LSGGQ+QR+ IAR + NP+++L+DE SALD + ++ +E +
Sbjct: 138 EVKDRLHDSALSLSGGQQQRLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKK 197
Query: 392 NRTTIVVAHRL---STVRDVDTIMVLKNGQVVESGTHVDLISKGGE 434
T I+V H + + V D M L G+++E + E
Sbjct: 198 EYTVIIVTHNMQQAARVSDYTGFMYL--GKLIEFDKTTQIFENPHE 241
|
Length = 253 |
| >gnl|CDD|213258 cd03291, ABCC_CFTR1, ATP-binding cassette domain of the cystic fibrosis transmembrane regulator, subfamily C | Back alignment and domain information |
|---|
Score = 104 bits (260), Expect = 2e-24
Identities = 64/208 (30%), Positives = 107/208 (51%), Gaps = 15/208 (7%)
Query: 852 IFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRR 911
+ +N+NLK+ G LA+ G +GSGK++++ L++ +P G + G
Sbjct: 52 VLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSG------------- 98
Query: 912 KIGLVQQEPALFSTTIYENIKYGNEDASEIELMKATKAANAHGFISRMPEGYQSHVGDRG 971
+I Q + TI ENI +G E KA I++ PE + +G+ G
Sbjct: 99 RISFSSQFSWIMPGTIKENIIFG-VSYDEYRYKSVVKACQLEEDITKFPEKDNTVLGEGG 157
Query: 972 VQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEA-LDKLMEGRTTIMVAH 1030
+ LSGGQ+ R+++ARA+ K+ + LLD LD +E I E+ + KLM +T I+V
Sbjct: 158 ITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEKEIFESCVCKLMANKTRILVTS 217
Query: 1031 RLSTIRNADKIAVLQQGKVAEIGSHEQL 1058
++ ++ ADKI +L +G G+ +L
Sbjct: 218 KMEHLKKADKILILHEGSSYFYGTFSEL 245
|
The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. Length = 282 |
| >gnl|CDD|237453 PRK13633, PRK13633, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 104 bits (260), Expect = 2e-24
Identities = 71/230 (30%), Positives = 112/230 (48%), Gaps = 27/230 (11%)
Query: 835 IELRNVSFKYPVRPD----ITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPI 890
I+ +NVS+KY + +++NL+V G L ++G++GSGKST+ + P
Sbjct: 5 IKCKNVSYKY-ESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPS 63
Query: 891 SGTVLIDGYDIRTL-NLRSLRRKIGLVQQEP--ALFSTTIYENIKYGNE----DASEIEL 943
G V +DG D NL +R K G+V Q P + +T + E++ +G E EI
Sbjct: 64 EGKVYVDGLDTSDEENLWDIRNKAGMVFQNPDNQIVATIVEEDVAFGPENLGIPPEEIRE 123
Query: 944 M--KATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEAT 1001
++ K + + P H+ LSGGQKQRVAIA + P ++ DE T
Sbjct: 124 RVDESLKKVGMYEYRRHAP-----HL------LSGGQKQRVAIAGILAMRPECIIFDEPT 172
Query: 1002 SALDTASENLIQEALDKL--MEGRTTIMVAHRLSTIRNADKIAVLQQGKV 1049
+ LD + + + +L G T I++ H + AD+I V+ GKV
Sbjct: 173 AMLDPSGRREVVNTIKELNKKYGITIILITHYMEEAVEADRIIVMDSGKV 222
|
Length = 280 |
| >gnl|CDD|172745 PRK14257, PRK14257, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 105 bits (263), Expect = 2e-24
Identities = 72/232 (31%), Positives = 118/232 (50%), Gaps = 9/232 (3%)
Query: 836 ELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGT-- 893
E+RN +F Y R + +LNL + + A +G SG GKST + + + D I GT
Sbjct: 82 EIRNFNFWYMNRTK-HVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSH 140
Query: 894 ---VLIDGYDIRTLNLRSL--RRKIGLVQQEPALFSTTIYENIKYGNEDASEIELMKATK 948
+ G + R+ + SL R +IG+V Q+P F +I++N+ YG + + K
Sbjct: 141 EGEIYFLGTNTRSKKISSLELRTRIGMVFQKPTPFEMSIFDNVAYGPRNNGINDRKILEK 200
Query: 949 AANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTAS 1008
+ + + + + G LSGGQ+QR+ IARAI P +LL+DE TSALD +
Sbjct: 201 IVEKSLKSAALWDEVKDDLDKAGNALSGGQQQRLCIARAIALEPEVLLMDEPTSALDPIA 260
Query: 1009 ENLIQEALDKLMEGRTTIMVAHRLSTI-RNADKIAVLQQGKVAEIGSHEQLL 1059
I+E + +L + + I+V H ++ R +D+ QG + E G + +
Sbjct: 261 TAKIEELILELKKKYSIIIVTHSMAQAQRISDETVFFYQGWIEEAGETKTIF 312
|
Length = 329 |
| >gnl|CDD|226628 COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 104 bits (262), Expect = 4e-24
Identities = 65/212 (30%), Positives = 106/212 (50%), Gaps = 19/212 (8%)
Query: 856 LNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDI----RTLNLRSLRR 911
N + A A+ G SGSGK+++I+++ P G + ++G + + + L +R
Sbjct: 17 ANFTLPARGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEKR 76
Query: 912 KIGLVQQEPALFS-TTIYENIKYGNEDASEIELMKATKAANAHGFISRMPEGYQSHVGDR 970
+IG V Q+ LF T+ N++YG + + + + R P
Sbjct: 77 RIGYVFQDARLFPHYTVRGNLRYGMWKSMRAQFDQLVALLGIEHLLDRYPG--------- 127
Query: 971 GVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLM-EGRTTIM-V 1028
LSGG+KQRVAI RA+L P +LL+DE ++LD + I L++L E I+ V
Sbjct: 128 --TLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKREILPYLERLRDEINIPILYV 185
Query: 1029 AHRLSTI-RNADKIAVLQQGKVAEIGSHEQLL 1059
+H L + R AD++ VL+ GKV G E++
Sbjct: 186 SHSLDEVLRLADRVVVLENGKVKASGPLEEVW 217
|
Length = 352 |
| >gnl|CDD|182716 PRK10771, thiQ, thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 101 bits (255), Expect = 4e-24
Identities = 75/238 (31%), Positives = 126/238 (52%), Gaps = 34/238 (14%)
Query: 835 IELRNVSFKY---PVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPIS 891
++L ++++ Y P+R +L V G +A++G SG+GKST+++L+ F P S
Sbjct: 2 LKLTDITWLYHHLPMR--------FDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPAS 53
Query: 892 GTVLIDGYDIRTLNLRSLRRKIGLVQQEPALFS-TTIYENIKYGNE-----DASEIELMK 945
G++ ++G D RR + ++ QE LFS T+ +NI G +A++ E +
Sbjct: 54 GSLTLNGQDHT--TTPPSRRPVSMLFQENNLFSHLTVAQNIGLGLNPGLKLNAAQREKLH 111
Query: 946 AT-KAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSAL 1004
A + ++R+P QLSGGQ+QRVA+AR +++ ILLLDE SAL
Sbjct: 112 AIARQMGIEDLLARLPG-----------QLSGGQRQRVALARCLVREQPILLLDEPFSAL 160
Query: 1005 DTASENLIQEALDKLMEGR--TTIMVAHRLS-TIRNADKIAVLQQGKVAEIGSHEQLL 1059
D A + + ++ + R T +MV+H L R A + V+ G++A G ++LL
Sbjct: 161 DPALRQEMLTLVSQVCQERQLTLLMVSHSLEDAARIAPRSLVVADGRIAWDGPTDELL 218
|
Length = 232 |
| >gnl|CDD|172748 PRK14260, PRK14260, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 102 bits (255), Expect = 5e-24
Identities = 70/240 (29%), Positives = 120/240 (50%), Gaps = 20/240 (8%)
Query: 835 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTV 894
I+++++SF Y I E +++ + + A++G SG GKST I + R + + G V
Sbjct: 8 IKVKDLSFYYNTSKAI---EGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISE-LEGPV 63
Query: 895 LIDG---------YDIRTLNLRSLRRKIGLVQQEPALFSTTIYENIKYGNEDASEIELMK 945
++G YD R +N+ LRR+IG+V Q P F +IYEN+ YG ++++
Sbjct: 64 KVEGVVDFFGQNIYDPR-ININRLRRQIGMVFQRPNPFPMSIYENVAYGVRISAKLPQAD 122
Query: 946 ATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALD 1005
+ + + + + + + + LSGGQ+QR+ IARA+ P +LL+DE SALD
Sbjct: 123 LDEIVESALKGAALWQEVKDKLNKSALGLSGGQQQRLCIARALAIKPKVLLMDEPCSALD 182
Query: 1006 TASENLIQEALDKLMEGRTTIMVAHRL-STIRNADKIAVLQQ-----GKVAEIGSHEQLL 1059
+ ++E + L T +V H + R +D A G++ E G Q+
Sbjct: 183 PIATMKVEELIHSLRSELTIAIVTHNMQQATRVSDFTAFFSTDESRIGQMVEFGVTTQIF 242
|
Length = 259 |
| >gnl|CDD|236898 PRK11308, dppF, dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 104 bits (261), Expect = 5e-24
Identities = 68/225 (30%), Positives = 113/225 (50%), Gaps = 50/225 (22%)
Query: 862 AGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLN---LRSLRRKIGLVQQ 918
G++LAVVG+SG GKST+ L+ P G + G D+ + + LR+KI +V Q
Sbjct: 40 RGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKADPEAQKLLRQKIQIVFQ 99
Query: 919 EPALFSTTIYENIKYGN-----------EDASEI--ELMKATKAANAHGFISRM---PEG 962
P YG+ E+ I L A + A ++++ PE
Sbjct: 100 NP------------YGSLNPRKKVGQILEEPLLINTSLSAAERREKALAMMAKVGLRPEH 147
Query: 963 YQS--HVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQ-EALDKL 1019
Y H+ SGGQ+QR+AIARA++ +P +++ DE SALD + +Q + L+ +
Sbjct: 148 YDRYPHM------FSGGQRQRIAIARALMLDPDVVVADEPVSALDVS----VQAQVLNLM 197
Query: 1020 ME-----GRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGSHEQL 1058
M+ G + + ++H LS + + AD++ V+ G+ E G+ EQ+
Sbjct: 198 MDLQQELGLSYVFISHDLSVVEHIADEVMVMYLGRCVEKGTKEQI 242
|
Length = 327 |
| >gnl|CDD|182893 PRK11000, PRK11000, maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 105 bits (263), Expect = 5e-24
Identities = 78/226 (34%), Positives = 127/226 (56%), Gaps = 18/226 (7%)
Query: 834 NIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGT 893
++ LRNV+ Y D+ I +++NL + G + VG SG GKST++ ++ D SG
Sbjct: 3 SVTLRNVTKAYG---DVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGD 59
Query: 894 VLIDGYDIRTLNLRSLRRKIGLVQQEPALFS-TTIYENIKYGNEDASEIELMKATKAANA 952
+ I + R ++ R +G+V Q AL+ ++ EN+ +G ++L A K
Sbjct: 60 LFIG--EKRMNDVPPAERGVGMVFQSYALYPHLSVAENMSFG------LKLAGAKKE-EI 110
Query: 953 HGFISRMPEGYQ-SHVGDRGVQ-LSGGQKQRVAIARAILKNPSILLLDEATSALDTASEN 1010
+ ++++ E Q +H+ DR + LSGGQ+QRVAI R ++ PS+ LLDE S LD A
Sbjct: 111 NQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRV 170
Query: 1011 LIQEALDKLME--GRTTIMVAH-RLSTIRNADKIAVLQQGKVAEIG 1053
++ + +L + GRT I V H ++ + ADKI VL G+VA++G
Sbjct: 171 QMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVG 216
|
Length = 369 |
| >gnl|CDD|237650 PRK14265, PRK14265, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 102 bits (256), Expect = 6e-24
Identities = 79/236 (33%), Positives = 117/236 (49%), Gaps = 39/236 (16%)
Query: 855 NLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDG---------YDIRTLN 905
+++LK+ A + +A +G SG GKST++ R D I G ++G YD + +N
Sbjct: 38 DVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAK-VEGRLLYRDRNIYDSQ-IN 95
Query: 906 LRSLRRKIGLVQQEPALFSTTIYENIKY--------GNEDASEIELMKATKAANAHGFIS 957
LRR++G+V Q P F +IYENI + GN D EL++ + A
Sbjct: 96 SVKLRRQVGMVFQRPNPFPKSIYENIAFAPRANGYKGNLD----ELVEDSLRRAA----- 146
Query: 958 RMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEALD 1017
+ E + + ++G LSGGQ+QR+ IARAI P +LL+DE SALD S ++E
Sbjct: 147 -IWEEVKDKLKEKGTALSGGQQQRLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCL 205
Query: 1018 KLMEGRTTIMVAHRLSTI-RNADKIAVL---------QQGKVAEIGSHEQLLRKEN 1063
+L E T IMV H + R AD A ++GK+ E EQ+
Sbjct: 206 ELKEQYTIIMVTHNMQQASRVADWTAFFNTEIDEYGKRRGKLVEFSPTEQMFGSPQ 261
|
Length = 274 |
| >gnl|CDD|223487 COG0410, LivF, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 101 bits (254), Expect = 6e-24
Identities = 64/217 (29%), Positives = 106/217 (48%), Gaps = 16/217 (7%)
Query: 222 VFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQL-KWLR 280
++ V+ G+ A +G +G+GK+T++ + L P SG+I+ DG D+ L + R
Sbjct: 18 ALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERAR 77
Query: 281 EQMGLVSQEPALFAT-SIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGE 339
+ V + +F ++ N+LLG E F P + +
Sbjct: 78 LGIAYVPEGRRIFPRLTVEENLLLGAYARRDKEAQERDLEEVYELF----PRLKERRNQR 133
Query: 340 GGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNR-----T 394
GT LSGG++Q +AIARA++ PK+LLLDE + L + IV+ E I R T
Sbjct: 134 AGT-LSGGEQQMLAIARALMSRPKLLLLDEPSEGL---APKIVEEIFEAIKELRKEGGMT 189
Query: 395 TIVVAHRLSTVRDV-DTIMVLKNGQVVESGTHVDLIS 430
++V ++ D VL+NG++V SGT +L++
Sbjct: 190 ILLVEQNARFALEIADRGYVLENGRIVLSGTAAELLA 226
|
Length = 237 |
| >gnl|CDD|182980 PRK11124, artP, arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 101 bits (254), Expect = 6e-24
Identities = 67/236 (28%), Positives = 115/236 (48%), Gaps = 29/236 (12%)
Query: 206 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKIL 265
I+ + + Y + H ++ G+T +GPSG+GKS+++ ++ L P SG +
Sbjct: 3 IQLNGINCFYGA--HQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLN 60
Query: 266 LDGH--DLKSL----QLKWLREQMGLVSQEPALFA--TSIANNI-----LLG-KEDASMD 311
+ G+ D ++ LR +G+V Q+ L+ T N I +LG +D ++
Sbjct: 61 IAGNHFDFSKTPSDKAIRELRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQALA 120
Query: 312 RVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEAT 371
R + + + + P LSGGQ+QR+AIARA++ P++LL DE T
Sbjct: 121 RAEKLLERLRLKPYADRFP-----------LHLSGGQQQRVAIARALMMEPQVLLFDEPT 169
Query: 372 SALDAE-SELIVQRALEKIMSNRTTIVVAHRLSTVRDVDTIMV-LKNGQVVESGTH 425
+ALD E + IV E + T ++V H + R + +V ++NG +VE G
Sbjct: 170 AALDPEITAQIVSIIRELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDA 225
|
Length = 242 |
| >gnl|CDD|162242 TIGR01187, potA, spermidine/putrescine ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 103 bits (258), Expect = 8e-24
Identities = 64/196 (32%), Positives = 99/196 (50%), Gaps = 23/196 (11%)
Query: 239 VGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGLVSQEPALFA-TSI 297
+GPSG GK+T++ ++ +P SG I+LDG D+ + + +V Q ALF ++
Sbjct: 2 LGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDV--TNVPPHLRHINMVFQSYALFPHMTV 59
Query: 298 ANNILLG----KEDAS--MDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQR 351
N+ G K + RV+EA + F + P QLSGGQ+QR
Sbjct: 60 EENVAFGLKMRKVPRAEIKPRVLEALRLVQLEEFADRKP-----------HQLSGGQQQR 108
Query: 352 IAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNR--TTIVVAHRLSTVRDV- 408
+A+ARA++ PKILLLDE SALD + +Q L+ I T + V H +
Sbjct: 109 VALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVFVTHDQEEAMTMS 168
Query: 409 DTIMVLKNGQVVESGT 424
D I +++ G++ + GT
Sbjct: 169 DRIAIMRKGKIAQIGT 184
|
This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included) [Transport and binding proteins, Amino acids, peptides and amines]. Length = 325 |
| >gnl|CDD|213186 cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component of branched chain amino acids transport system | Back alignment and domain information |
|---|
Score = 100 bits (253), Expect = 8e-24
Identities = 64/222 (28%), Positives = 108/222 (48%), Gaps = 23/222 (10%)
Query: 855 NLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTL--NLRSLRRK 912
+++ V G ++G +G+GK+T+ +L+ F P SG+VL DG DI L + + R
Sbjct: 18 DVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIA-RLG 76
Query: 913 IGLVQQEPALFST-TIYENI--------KYGNEDASEIELMKATKAANAHGFISRMPEGY 963
IG Q P LF T+ EN+ G A + + A + R+ G
Sbjct: 77 IGRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARER-AEELLERV--GL 133
Query: 964 QSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKL-MEG 1022
+LS GQ++R+ IARA+ +P +LLLDE + L+ + E + +L G
Sbjct: 134 ADLADRPAGELSYGQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRERG 193
Query: 1023 RTTIMVAHRLSTIRN-ADKIAVLQQGKV------AEIGSHEQ 1057
T ++V H + + + AD++ VL QG+V E+ ++ +
Sbjct: 194 ITVLLVEHDMDVVMSLADRVTVLDQGRVIAEGTPDEVRNNPR 235
|
The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). Length = 236 |
| >gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Score = 108 bits (272), Expect = 9e-24
Identities = 146/564 (25%), Positives = 239/564 (42%), Gaps = 96/564 (17%)
Query: 560 VGLAVVTIPVYLLQHYFYTLMG-EHLTARVRLSMFSAI------LSNEIGWFDLDENNTG 612
+GL ++ I LL H + G HL ++R+++FS I LS+ + LD+ +TG
Sbjct: 126 LGLCLLFIVRTLLLHP--AIFGLHHLGMQMRIALFSLIYKKTLKLSSRV----LDKISTG 179
Query: 613 LLISTLAADATLVRSALADRLSIIVQNVALTVTAFVIAFILSWRLAAVVAASLPLLIGAF 672
L+S L+ + LA + V + ++ L W L + + +G
Sbjct: 180 QLVSLLSNNLNKFDEGLA-----LAHFVWIAPLQVILLMGLIWEL---LEVNGFCGLGFL 231
Query: 673 VAEQLFLKGFG---GDY--NRA--YSRATSVAREAIANIRTVAAYG----IEKRISIQFA 721
+ LF G Y RA S ++ E I NI++V AY +EK I
Sbjct: 232 ILLALFQACLGQKMMPYRDKRAGKISERLAITSEIIENIQSVKAYCWEEAMEKIIKNIRQ 291
Query: 722 SELSQPNKQALLRGH------ISGF--------------GYGVSQLLSLCSY-------- 753
EL K A LR SGF G + ++ + SY
Sbjct: 292 DELKLTRKIAYLRYFYSSAFFFSGFFVVFLSVVPYALIKGIILRRIFTTISYCIVLRMTV 351
Query: 754 ------ALGLWYASVLIKQKGSNFGDIMKSFMVLIITALAVAETLALAPDIVKGSQALGP 807
A+ WY S+ K +F + K + L E ++V + +
Sbjct: 352 TRQFPGAIQTWYDSLGAITKIQDF--LCKEEYKTLEYNLTTTEV-----EMVNVTASWDE 404
Query: 808 VFGILYRKTAIQPDDPASKEVTEIKGNIELRNVSFKYPVRPDITIFENLNLKVSAGRSLA 867
G L+ K I+ ++ A K+ G+ L +F V P + +N++ K+ G+ LA
Sbjct: 405 GIGELFEK--IKQNNKARKQPN---GDDGLFFSNFSLYVTP---VLKNISFKLEKGQLLA 456
Query: 868 VVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRKIGLVQQEPALFSTTI 927
V G +GSGKS+++ ++M +P G + G +I Q + TI
Sbjct: 457 VAGSTGSGKSSLLMMIMGELEPSEGKIKHSG-------------RISFSPQTSWIMPGTI 503
Query: 928 YENIKYGNEDASEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARA 987
+NI +G E KA I+ PE ++ +G+ G+ LSGGQ+ R+++ARA
Sbjct: 504 KDNIIFG-LSYDEYRYTSVIKACQLEEDIALFPEKDKTVLGEGGITLSGGQRARISLARA 562
Query: 988 ILKNPSILLLDEATSALDTASENLIQEA-LDKLMEGRTTIMVAHRLSTIRNADKIAVLQQ 1046
+ K+ + LLD + LD +E I E+ L KLM +T I+V +L ++ ADKI +L +
Sbjct: 563 VYKDADLYLLDSPFTHLDVVTEKEIFESCLCKLMSNKTRILVTSKLEHLKKADKILLLHE 622
Query: 1047 GKVAEIGSHEQLLRKENGIYKQLI 1070
G G+ +L K L+
Sbjct: 623 GVCYFYGTFSELQAKRPDFSSLLL 646
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se [Transport and binding proteins, Anions]. Length = 1490 |
| >gnl|CDD|226635 COG4161, ArtP, ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 101 bits (252), Expect = 9e-24
Identities = 66/222 (29%), Positives = 109/222 (49%), Gaps = 27/222 (12%)
Query: 220 HMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGH--DLKSL--- 274
H ++ G+T +GPSG+GKS+++ ++ L P SG + + G+ D
Sbjct: 15 HQALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSD 74
Query: 275 -QLKWLREQMGLVSQEPALFA--TSIANNI-----LLG-KEDASMDRVIEAAKAANAHSF 325
++ LR +G+V Q+ L+ T N I +LG +D ++ R + K +
Sbjct: 75 KAIRDLRRNVGMVFQQYNLWPHLTVQENLIEAPCRVLGLSKDQALARAEKLLKRLRLKPY 134
Query: 326 VEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAE-SELIVQR 384
+ P LSGGQ+QR+AIARA++ P++LL DE T+ALD E + IV
Sbjct: 135 ADRYP-----------LHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSI 183
Query: 385 ALEKIMSNRTTIVVAHRLSTVRDVDTIMV-LKNGQVVESGTH 425
E + T ++V H + R + +V ++NG +VE G
Sbjct: 184 IKELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDA 225
|
Length = 242 |
| >gnl|CDD|184204 PRK13645, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 102 bits (255), Expect = 9e-24
Identities = 78/243 (32%), Positives = 119/243 (48%), Gaps = 34/243 (13%)
Query: 833 GNIELRNVSFKYPVRP--DITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPI 890
+I L NVS+ Y + + N +L + V+G +GSGKST+I L
Sbjct: 5 KDIILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISE 64
Query: 891 SGTVLIDGYDI-----RTLNLRSLRRKIGLVQQEP--ALFSTTIYENIKYG----NEDAS 939
+G ++ Y I + ++ LR++IGLV Q P LF TI ++I +G E+
Sbjct: 65 TGQTIVGDYAIPANLKKIKEVKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNLGENKQ 124
Query: 940 EI-----ELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSI 994
E EL+K + ++PE Y V +LSGGQK+RVA+A I + +
Sbjct: 125 EAYKKVPELLK----------LVQLPEDY---VKRSPFELSGGQKRRVALAGIIAMDGNT 171
Query: 995 LLLDEATSALDTASENLIQEALDKLME--GRTTIMVAHRLSTI-RNADKIAVLQQGKVAE 1051
L+LDE T LD E ++L + + IMV H + + R AD++ V+ +GKV
Sbjct: 172 LVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVIS 231
Query: 1052 IGS 1054
IGS
Sbjct: 232 IGS 234
|
Length = 289 |
| >gnl|CDD|184587 PRK14241, PRK14241, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 100 bits (252), Expect = 1e-23
Identities = 74/232 (31%), Positives = 118/232 (50%), Gaps = 39/232 (16%)
Query: 854 ENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPI-----SGTVLIDGYDI--RTLNL 906
E++NL + A +G SG GKSTV+ + R ++ I G VL+DG D+ ++
Sbjct: 21 EDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDP 80
Query: 907 RSLRRKIGLVQQEPALFST-TIYENI--------KYGNEDASEIELMKATKAANAHGFIS 957
++RR IG+V Q P F T +I +N+ +D E+ + K+ + AN
Sbjct: 81 VAVRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDLDEL-VEKSLRGAN------ 133
Query: 958 RMPEGYQSHVGDR----GVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQ 1013
+ V DR G LSGGQ+QR+ IARAI P +LL+DE SALD S I+
Sbjct: 134 -----LWNEVKDRLDKPGGGLSGGQQQRLCIARAIAVEPDVLLMDEPCSALDPISTLAIE 188
Query: 1014 EALDKLMEGRTTIMVAHRL-STIRNADKIA------VLQQGKVAEIGSHEQL 1058
+ +++L + T ++V H + R +D+ A + G++ EI E++
Sbjct: 189 DLINELKQDYTIVIVTHNMQQAARVSDQTAFFNLEATGKPGRLVEIDDTEKI 240
|
Length = 258 |
| >gnl|CDD|172760 PRK14272, PRK14272, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 101 bits (252), Expect = 1e-23
Identities = 71/227 (31%), Positives = 120/227 (52%), Gaps = 16/227 (7%)
Query: 849 DITIF-------ENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYD-----PISGTVLI 896
D+ I+ +N+NL V G A++G SG GK+T + + R +D ++G +L+
Sbjct: 9 DVNIYYGDKQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILL 68
Query: 897 DGYDIRT--LNLRSLRRKIGLVQQEPALFST-TIYENIKYGNEDASEIELMKATKAANAH 953
DG DI ++ ++RR++G+V Q+P F T ++++N+ G + A + + A
Sbjct: 69 DGQDIYGPRVDPVAMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERS 128
Query: 954 GFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQ 1013
+ + + + + LSGGQ+QR+ IARA+ P ILL+DE TSALD AS I+
Sbjct: 129 LRGAALWDEVKDRLKTPATGLSGGQQQRLCIARALAVEPEILLMDEPTSALDPASTARIE 188
Query: 1014 EALDKLMEGRTTIMVAHRL-STIRNADKIAVLQQGKVAEIGSHEQLL 1059
+ + L + T I+V H + R +D + G + E G +QL
Sbjct: 189 DLMTDLKKVTTIIIVTHNMHQAARVSDTTSFFLVGDLVEHGPTDQLF 235
|
Length = 252 |
| >gnl|CDD|184584 PRK14238, PRK14238, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 101 bits (253), Expect = 1e-23
Identities = 66/210 (31%), Positives = 106/210 (50%), Gaps = 16/210 (7%)
Query: 854 ENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPI-----SGTVLIDGYDI--RTLNL 906
+N+NL + A++G SG GKST I + R + + +G +L +I ++ ++
Sbjct: 41 KNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYSV 100
Query: 907 RSLRRKIGLVQQEPALFSTTIYENIKYGNEDASEIELMKATKAANAHGFISRMPEGYQSH 966
LR +G+V Q+P F +IY+N+ YG +I +K K + S
Sbjct: 101 EELRTNVGMVFQKPNPFPKSIYDNVTYG----PKIHGIKDKKTLDEIVEKSLRGAAIWDE 156
Query: 967 VGDR----GVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLMEG 1022
+ DR LSGGQ+QR+ IAR + P ++L+DE TSALD S ++E + +L +
Sbjct: 157 LKDRLHDNAYGLSGGQQQRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKKD 216
Query: 1023 RTTIMVAHRL-STIRNADKIAVLQQGKVAE 1051
+ I+V H + R +DK A G V E
Sbjct: 217 YSIIIVTHNMQQAARISDKTAFFLNGYVNE 246
|
Length = 271 |
| >gnl|CDD|226961 COG4598, HisP, ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 101 bits (253), Expect = 1e-23
Identities = 75/235 (31%), Positives = 120/235 (51%), Gaps = 42/235 (17%)
Query: 852 IFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTL------- 904
+ + ++L+ +AG ++++G SGSGKST + + P +G++ ++G +IR
Sbjct: 21 VLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKDGQL 80
Query: 905 ------NLRSLRRKIGLVQQEPALFS-TTIYENIKYGNEDASEIE-------LMKATKAA 950
L+ LR ++G+V Q L+S T+ EN+ IE + KA
Sbjct: 81 KPADKRQLQRLRTRLGMVFQHFNLWSHMTVLENV---------IEAPVHVLGVSKAEAIE 131
Query: 951 NAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASEN 1010
A +++++ G LSGGQ+QRVAIARA+ P ++L DE TSALD
Sbjct: 132 RAEKYLAKV--GIAEKADAYPAHLSGGQQQRVAIARALAMEPEVMLFDEPTSALDP---E 186
Query: 1011 LIQEALDKLM-----EGRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGSHEQLL 1059
L+ E L K+M EGRT ++V H + R+ + + L QGK+ E G EQ+
Sbjct: 187 LVGEVL-KVMQDLAEEGRTMVVVTHEMGFARDVSSHVIFLHQGKIEEEGPPEQVF 240
|
Length = 256 |
| >gnl|CDD|237646 PRK14237, PRK14237, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 101 bits (253), Expect = 1e-23
Identities = 63/181 (34%), Positives = 96/181 (53%), Gaps = 21/181 (11%)
Query: 234 KTFAFVGPSGSGKSTIISMVQRLYEP-----TSGKILLDGHDL--KSLQLKWLREQMGLV 286
K A +GPSGSGKST + + R+ + +G+IL G D+ K + + +R+ +G+V
Sbjct: 47 KITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEINVYEMRKHIGMV 106
Query: 287 SQEPALFATSIANNILLG------KEDASMDRVIEAA-KAANAHSFVEGLPDGYQTQVGE 339
Q P FA SI NI K+ +D ++E + K A L D + + +
Sbjct: 107 FQRPNPFAKSIYENITFALERAGVKDKKVLDEIVETSLKQA-------ALWDQVKDDLHK 159
Query: 340 GGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVA 399
LSGGQ+QR+ IARA+ P ILL+DE SALD S + ++ + ++ N T I+V
Sbjct: 160 SALTLSGGQQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELKKNYTIIIVT 219
Query: 400 H 400
H
Sbjct: 220 H 220
|
Length = 267 |
| >gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Score = 108 bits (271), Expect = 1e-23
Identities = 67/250 (26%), Positives = 132/250 (52%), Gaps = 4/250 (1%)
Query: 821 DDPASKEVTEIKGNIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVI 880
++P +++ G ++++ ++ KY + ++L+ V G+ + ++G++GSGKST++
Sbjct: 1204 ENPHAQKCWPSGGQMDVQGLTAKY-TEAGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLL 1262
Query: 881 SLVMRFYDPISGTVLIDGYDIRTLNLRSLRRKIGLVQQEPALFSTTIYENIKYGNEDASE 940
S ++R G + IDG ++ L++ R+ G++ Q+ +FS T +N+ E S+
Sbjct: 1263 SALLRLLS-TEGEIQIDGVSWNSVTLQTWRKAFGVIPQKVFIFSGTFRKNLD-PYEQWSD 1320
Query: 941 IELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEA 1000
E+ K + I + P+ + D G LS G KQ + +AR+IL ILLLDE
Sbjct: 1321 EEIWKVAEEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQLMCLARSILSKAKILLLDEP 1380
Query: 1001 TSALDTASENLIQEALDKLMEGRTTIMVAHRLSTIRNADKIAVLQQGKVAEIGSHEQLLR 1060
++ LD + +I++ L + T I+ HR+ + + V++ V + S ++LL
Sbjct: 1381 SAHLDPVTLQIIRKTLKQSFSNCTVILSEHRVEALLECQQFLVIEGSSVKQYDSIQKLL- 1439
Query: 1061 KENGIYKQLI 1070
E ++KQ +
Sbjct: 1440 NETSLFKQAM 1449
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se [Transport and binding proteins, Anions]. Length = 1490 |
| >gnl|CDD|223487 COG0410, LivF, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 100 bits (251), Expect = 1e-23
Identities = 67/239 (28%), Positives = 110/239 (46%), Gaps = 25/239 (10%)
Query: 835 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTV 894
+E+ N+S Y I ++L+V G +A++G++G+GK+T++ +M P SG +
Sbjct: 4 LEVENLSAGYG---KIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRI 60
Query: 895 LIDGYDIRTLNL-RSLRRKIGLVQQEPALFST-TIYENIKYGNEDASEIELMKATKAANA 952
+ DG DI L R I V + +F T+ EN+ L+ A +
Sbjct: 61 IFDGEDITGLPPHERARLGIAYVPEGRRIFPRLTVEENL-----------LLGAYARRDK 109
Query: 953 HGFISRMPEGY------QSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDT 1006
+ E Y + R LSGG++Q +AIARA++ P +LLLDE + L
Sbjct: 110 EAQERDLEEVYELFPRLKERRNQRAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAP 169
Query: 1007 ASENLIQEALDKL--MEGRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGSHEQLLRKE 1062
I EA+ +L G T ++V AD+ VL+ G++ G+ +LL
Sbjct: 170 KIVEEIFEAIKELRKEGGMTILLVEQNARFALEIADRGYVLENGRIVLSGTAAELLADP 228
|
Length = 237 |
| >gnl|CDD|131197 TIGR02142, modC_ABC, molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 103 bits (259), Expect = 1e-23
Identities = 71/221 (32%), Positives = 112/221 (50%), Gaps = 25/221 (11%)
Query: 856 LNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLN-------LRS 908
+ + A+ G+SGSGK+T+I L+ P G ++++G RTL L
Sbjct: 16 ADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNG---RTLFDSRKGIFLPP 72
Query: 909 LRRKIGLVQQEPALFS-TTIYENIKYGNEDASEIELMKATKAANAHGFISRMPEGYQ-SH 966
+R+IG V QE LF ++ N++YG MK + + R+ E H
Sbjct: 73 EKRRIGYVFQEARLFPHLSVRGNLRYG---------MKRARPSERRISFERVIELLGIGH 123
Query: 967 VGDRGV-QLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLME--GR 1023
+ R +LSGG+KQRVAI RA+L +P +LL+DE +ALD + I L++L G
Sbjct: 124 LLGRLPGRLSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEILPYLERLHAEFGI 183
Query: 1024 TTIMVAHRLSTI-RNADKIAVLQQGKVAEIGSHEQLLRKEN 1063
+ V+H L + R AD++ VL+ G+VA G ++ +
Sbjct: 184 PILYVSHSLQEVLRLADRVVVLEDGRVAAAGPIAEVWASPD 224
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter [Transport and binding proteins, Anions]. Length = 354 |
| >gnl|CDD|172744 PRK14256, PRK14256, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 100 bits (251), Expect = 1e-23
Identities = 67/210 (31%), Positives = 111/210 (52%), Gaps = 25/210 (11%)
Query: 867 AVVGQSGSGKSTVISLVMRFYD-----PISGTVLIDGYDI--RTLNLRSLRRKIGLVQQE 919
A++G SG GKSTV+ + R +D ++G +L+D DI R ++ S+RR++G+V Q+
Sbjct: 34 AIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVDPVSIRRRVGMVFQK 93
Query: 920 PALF-STTIYENIKYG--------NEDASEIELMKATKAANAHGFISRMPEGYQSHVGDR 970
P F + +IY+N+ G +A EI + A + + + +
Sbjct: 94 PNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVA--------LWDEVKDRLKSN 145
Query: 971 GVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLMEGRTTIMVAH 1030
++LSGGQ+QR+ IAR I P ++L+DE SALD S I+E +++L E T I+V H
Sbjct: 146 AMELSGGQQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKEKYTIIIVTH 205
Query: 1031 RL-STIRNADKIAVLQQGKVAEIGSHEQLL 1059
+ R +D A G + E G +++
Sbjct: 206 NMQQAARVSDYTAFFYMGDLVECGETKKIF 235
|
Length = 252 |
| >gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily | Back alignment and domain information |
|---|
Score = 98.4 bits (246), Expect = 2e-23
Identities = 58/205 (28%), Positives = 94/205 (45%), Gaps = 43/205 (20%)
Query: 225 NLNFSVDAGKTFAFVGPSGSGKSTIISMV--QRLYEPTSGKILLDGHDLKSLQLKWLREQ 282
N++ G+ A +GPSG+GKST+++ + +R SG++L++G L + R+
Sbjct: 27 NVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLD---KRSFRKI 83
Query: 283 MGLVSQEPALFATSIANNILLGKEDASMDRVIEAAK-AANAHSFVEGLPDGYQTQVGEGG 341
+G V Q+ L T V E AA
Sbjct: 84 IGYVPQDDILHPTLT---------------VRETLMFAAKLRG----------------- 111
Query: 342 TQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMS-NRTTIVVAH 400
LSGG+++R++IA ++ NP +L LDE TS LD+ S L V L ++ RT I H
Sbjct: 112 --LSGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIH 169
Query: 401 RLST--VRDVDTIMVLKNGQVVESG 423
+ S+ D +++L G+V+ G
Sbjct: 170 QPSSEIFELFDKLLLLSQGRVIYFG 194
|
ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. Length = 194 |
| >gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 104 bits (263), Expect = 2e-23
Identities = 67/215 (31%), Positives = 114/215 (53%), Gaps = 32/215 (14%)
Query: 225 NLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLK----WLR 280
+++ SV G+ A +G +G+GKST++ ++ LY+P SG+I +DG K +++K +R
Sbjct: 22 DVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDG---KEVRIKSPRDAIR 78
Query: 281 EQMGLVSQEPALFAT-SIANNILLGKEDASMDRVIEAAKAANAHSFVE--GL---PDGYQ 334
+G+V Q L T ++A NI+LG E + + A E GL PD
Sbjct: 79 LGIGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVDPDAK- 137
Query: 335 TQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSAL-DAESELIVQRALEKIMSN- 392
V + LS G++QR+ I +A+ R ++L+LDE T+ L E++ L +I+
Sbjct: 138 --VAD----LSVGEQQRVEILKALYRGARLLILDEPTAVLTPQEAD-----ELFEILRRL 186
Query: 393 ----RTTIVVAHRLSTVRDV-DTIMVLKNGQVVES 422
+T I + H+L V + D + VL+ G+VV +
Sbjct: 187 AAEGKTIIFITHKLKEVMAIADRVTVLRRGKVVGT 221
|
Length = 501 |
| >gnl|CDD|237454 PRK13634, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 101 bits (254), Expect = 2e-23
Identities = 73/254 (28%), Positives = 120/254 (47%), Gaps = 34/254 (13%)
Query: 206 IEFSEVCFAYPSRPHMVFENL-----NFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPT 260
I F +V Y + FE N S+ +G A +G +GSGKST++ + L +PT
Sbjct: 3 ITFQKVEHRY--QYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPT 60
Query: 261 SGKILLDGHDL----KSLQLKWLREQMGLVSQ--EPALFATSIANNILLGKEDASMDRVI 314
SG + + + K+ +LK LR+++G+V Q E LF ++ +I G + +
Sbjct: 61 SGTVTIGERVITAGKKNKKLKPLRKKVGIVFQFPEHQLFEETVEKDICFGPMNFGVSEED 120
Query: 315 EAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSAL 374
KA V GLP+ + +LSGGQ +R+AIA + P++L+LDE T+ L
Sbjct: 121 AKQKAREMIELV-GLPEELLAR---SPFELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGL 176
Query: 375 DAESELIVQRALEKIMS---------NRTTIVVAHRLSTV-RDVDTIMVLKNGQVVESGT 424
D + +++M TT++V H + R D I+V+ G V GT
Sbjct: 177 DP-------KGRKEMMEMFYKLHKEKGLTTVLVTHSMEDAARYADQIVVMHKGTVFLQGT 229
Query: 425 HVDLISKGGEYAAL 438
++ + E A+
Sbjct: 230 PREIFADPDELEAI 243
|
Length = 290 |
| >gnl|CDD|184585 PRK14239, PRK14239, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 99.9 bits (249), Expect = 3e-23
Identities = 63/214 (29%), Positives = 111/214 (51%), Gaps = 22/214 (10%)
Query: 225 NLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYE-----PTSGKILLDGHDLKSLQLKW- 278
+++ + A +GPSGSGKST++ + R+ + +G I+ +GH++ S +
Sbjct: 23 SVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDTV 82
Query: 279 -LREQMGLVSQEPALFATSIANNILLG------KEDASMDRVIEAA-KAANAHSFVEGLP 330
LR+++G+V Q+P F SI N++ G K+ +D +E + K A+ +
Sbjct: 83 DLRKEIGMVFQQPNPFPMSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGAS-------IW 135
Query: 331 DGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIM 390
D + ++ + LSGGQ+QR+ IAR + +PKI+LLDE TSALD S ++ L +
Sbjct: 136 DEVKDRLHDSALGLSGGQQQRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLK 195
Query: 391 SNRTTIVVAHRLSTV-RDVDTIMVLKNGQVVESG 423
+ T ++V + R D +G ++E
Sbjct: 196 DDYTMLLVTRSMQQASRISDRTGFFLDGDLIEYN 229
|
Length = 252 |
| >gnl|CDD|172744 PRK14256, PRK14256, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 99.7 bits (248), Expect = 3e-23
Identities = 66/204 (32%), Positives = 111/204 (54%), Gaps = 25/204 (12%)
Query: 237 AFVGPSGSGKSTIISMVQRLYE--PT---SGKILLDGHDL--KSLQLKWLREQMGLVSQE 289
A +GPSG GKST++ + R+++ P+ +GKILLD D+ + + +R ++G+V Q+
Sbjct: 34 AIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVDPVSIRRRVGMVFQK 93
Query: 290 PALF-ATSIANNILLG--------KEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEG 340
P F A SI +N++ G + +A D ++E++ A L D + ++
Sbjct: 94 PNPFPAMSIYDNVIAGYKLNGRVNRSEA--DEIVESSLKRVA------LWDEVKDRLKSN 145
Query: 341 GTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAH 400
+LSGGQ+QR+ IAR + P+++L+DE SALD S L ++ +E++ T I+V H
Sbjct: 146 AMELSGGQQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKEKYTIIIVTH 205
Query: 401 RL-STVRDVDTIMVLKNGQVVESG 423
+ R D G +VE G
Sbjct: 206 NMQQAARVSDYTAFFYMGDLVECG 229
|
Length = 252 |
| >gnl|CDD|131817 TIGR02770, nickel_nikD, nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Score = 99.4 bits (248), Expect = 3e-23
Identities = 65/223 (29%), Positives = 108/223 (48%), Gaps = 32/223 (14%)
Query: 855 NLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDP----ISGTVLIDGYDIRTLNLRSLR 910
+LNL + G LA+VG+SGSGKS ++ P SG +L+DG + L++R
Sbjct: 4 DLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIRG-- 61
Query: 911 RKIGLVQQEP-----ALFS--TTIYENIK-----YGNEDASEIELMKATKAANAHGFISR 958
R I + Q P LF+ E ++ A +E ++A + + +
Sbjct: 62 RHIATIMQNPRTAFNPLFTMGNHAIETLRSLGKLSKQARALILEALEAVGLPDPEEVLKK 121
Query: 959 MPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDK 1018
P QLSGG QRV IA A+L P L+ DE T+ LD ++ + + L +
Sbjct: 122 YP-----------FQLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQARVLKLLRE 170
Query: 1019 LMEGRTT--IMVAHRLSTI-RNADKIAVLQQGKVAEIGSHEQL 1058
L + T +++ H L + R AD++AV+ G++ E G+ +++
Sbjct: 171 LRQLFGTGILLITHDLGVVARIADEVAVMDDGRIVERGTVKEI 213
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous [Transport and binding proteins, Cations and iron carrying compounds]. Length = 230 |
| >gnl|CDD|172762 PRK14274, PRK14274, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 99 bits (249), Expect = 3e-23
Identities = 72/213 (33%), Positives = 107/213 (50%), Gaps = 16/213 (7%)
Query: 853 FENLNLKVSAGRSLAVVGQSGSGKSTVISLV--MRFYDP---ISGTVLIDGYDI--RTLN 905
+N+NL + A++G SG GKST I + M P ++G + +G +I ++
Sbjct: 28 LKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVD 87
Query: 906 LRSLRRKIGLVQQEPALFSTTIYENIKYGNEDASEIELMKATKAANAHGFISRMPEGYQS 965
L LR+ IG+V Q+ F +I++N+ YG I K K S
Sbjct: 88 LVELRKNIGMVFQKGNPFPQSIFDNVAYG----PRIHGTKNKKKLQEIVEKSLKDVALWD 143
Query: 966 HVGDR----GVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLME 1021
V DR + LSGGQ+QR+ IARA+ NP +LL+DE TSALD S I+E + KL E
Sbjct: 144 EVKDRLHTQALSLSGGQQQRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKE 203
Query: 1022 GRTTIMVAHRL-STIRNADKIAVLQQGKVAEIG 1053
T ++V H + R +D+ A G++ E
Sbjct: 204 KYTIVIVTHNMQQAARVSDQTAFFYMGELVECN 236
|
Length = 259 |
| >gnl|CDD|237652 PRK14275, PRK14275, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 100 bits (251), Expect = 3e-23
Identities = 76/218 (34%), Positives = 104/218 (47%), Gaps = 42/218 (19%)
Query: 867 AVVGQSGSGKSTVISLVMRFYDPI-----SGTVLIDGYDI--RTLNLRSLRRKIGLVQQE 919
A++G SG GKST + + R D I +G ++ DG DI + + LR+KIG+V Q+
Sbjct: 69 AIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTDEVLLRKKIGMVFQK 128
Query: 920 PALFSTTIYENIKYG--------NEDASEIELMKATKAANAHGFISRMPEGYQSHVGDR- 970
P F +I++NI YG + EI KAA V DR
Sbjct: 129 PNPFPKSIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAA------------LWDEVSDRL 176
Query: 971 ---GVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTAS----ENLIQEALDKLMEGR 1023
+ LSGGQ+QR+ +AR + P ILLLDE TSALD + E+LIQE + G
Sbjct: 177 DKNALGLSGGQQQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQE-----LRGS 231
Query: 1024 TTIM-VAHRLSTI-RNADKIAVLQQGKVAEIGSHEQLL 1059
TIM V H + R +D +G + E QL
Sbjct: 232 YTIMIVTHNMQQASRVSDYTMFFYEGVLVEHAPTAQLF 269
|
Length = 286 |
| >gnl|CDD|223488 COG0411, LivG, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 99.6 bits (249), Expect = 4e-23
Identities = 65/226 (28%), Positives = 106/226 (46%), Gaps = 18/226 (7%)
Query: 850 ITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSL 909
+T +++L+V G + ++G +G+GK+T+ +L+ FY P SGTV+ G DI L +
Sbjct: 17 LTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRI 76
Query: 910 -RRKIGLVQQEPALFST-TIYENIKYGNEDASEIELMKATKAAN---------AHGFISR 958
R I Q LF T+ EN+ G + + A A +
Sbjct: 77 ARLGIARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEF 136
Query: 959 MPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSAL-DTASENLIQEALD 1017
+ G LS GQ++R+ IARA+ P +LLLDE + L +E L E +
Sbjct: 137 V--GLGELADRPAGNLSYGQQRRLEIARALATQPKLLLLDEPAAGLNPEETEELA-ELIR 193
Query: 1018 KL--MEGRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGSHEQLLR 1060
+L G T +++ H + + AD+I VL G+V G+ E++
Sbjct: 194 ELRDRGGVTILLIEHDMKLVMGLADRIVVLNYGEVIAEGTPEEVRN 239
|
Length = 250 |
| >gnl|CDD|184596 PRK14267, PRK14267, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 99.5 bits (248), Expect = 4e-23
Identities = 70/238 (29%), Positives = 118/238 (49%), Gaps = 19/238 (7%)
Query: 835 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYD-----P 889
IE N+ Y + + ++LK+ A++G SG GKST++ R +
Sbjct: 5 IETVNLRVYYG---SNHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEAR 61
Query: 890 ISGTVLIDGYDIRTLNLRSL--RRKIGLVQQEPALFS-TTIYENI----KYGNEDASEIE 942
+ G V + G +I + ++ + RR++G+V Q P F TIY+N+ K S+ E
Sbjct: 62 VEGEVRLFGRNIYSPDVDPIEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKE 121
Query: 943 LMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATS 1002
L + + A + + + + + D LSGGQ+QR+ IARA+ P ILL+DE T+
Sbjct: 122 LDERVEWALKK---AALWDEVKDRLNDYPSNLSGGQRQRLVIARALAMKPKILLMDEPTA 178
Query: 1003 ALDTASENLIQEALDKLMEGRTTIMVAHR-LSTIRNADKIAVLQQGKVAEIGSHEQLL 1059
+D I+E L +L + T ++V H R +D +A L GK+ E+G ++
Sbjct: 179 NIDPVGTAKIEELLFELKKEYTIVLVTHSPAQAARVSDYVAFLYLGKLIEVGPTRKVF 236
|
Length = 253 |
| >gnl|CDD|213183 cd03216, ABC_Carb_Monos_I, First domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 96.3 bits (241), Expect = 5e-23
Identities = 59/202 (29%), Positives = 92/202 (45%), Gaps = 64/202 (31%)
Query: 225 NLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMG 284
++ SV G+ A +G +G+GKST++ ++ LY+P SG+IL+DG
Sbjct: 18 GVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDG---------------- 61
Query: 285 LVSQEPALFATSIANNILLGKEDASMDRVIEAAKAANAH--SFVEGLPDGYQTQVGEGGT 342
+ FA+ + A + V YQ
Sbjct: 62 ----KEVSFAS---------------------PRDARRAGIAMV------YQ-------- 82
Query: 343 QLSGGQKQRIAIARAVLRNPKILLLDEATSAL-DAESE--LIVQRALEKIMSNRTTIVVA 399
LS G++Q + IARA+ RN ++L+LDE T+AL AE E V R L I ++
Sbjct: 83 -LSVGERQMVEIARALARNARLLILDEPTAALTPAEVERLFKVIRRLRA--QGVAVIFIS 139
Query: 400 HRLSTVRDV-DTIMVLKNGQVV 420
HRL V ++ D + VL++G+VV
Sbjct: 140 HRLDEVFEIADRVTVLRDGRVV 161
|
This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 163 |
| >gnl|CDD|172200 PRK13652, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 99.9 bits (249), Expect = 5e-23
Identities = 74/252 (29%), Positives = 128/252 (50%), Gaps = 20/252 (7%)
Query: 206 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKIL 265
IE ++C++Y N+NF A +GP+G+GKST+ + +PTSG +L
Sbjct: 4 IETRDLCYSYSGSKE-ALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVL 62
Query: 266 LDGHDLKSLQLKWLREQMGLVSQEP--ALFATSIANNILLGKEDASMDRVIEAAKAANAH 323
+ G + ++ +R+ +GLV Q P +F+ ++ +I G + +D A + ++A
Sbjct: 63 IRGEPITKENIREVRKFVGLVFQNPDDQIFSPTVEQDIAFGPINLGLDEETVAHRVSSAL 122
Query: 324 SFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAE--SELI 381
+ GL + + +V LSGG+K+R+AIA + P++L+LDE T+ LD + ELI
Sbjct: 123 HML-GLEE-LRDRVPH---HLSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELI 177
Query: 382 V-QRALEKIMSNRTTIVVAHRLSTVRDV-DTIMVLKNGQVVESGTHVDLISKGGEYAALV 439
L + T I H+L V ++ D I V+ G++V GT ++ +
Sbjct: 178 DFLNDLPETYG-MTVIFSTHQLDLVPEMADYIYVMDKGRIVAYGTVEEIFLQP------- 229
Query: 440 NLQSSEHLSNPS 451
+L + HL PS
Sbjct: 230 DLLARVHLDLPS 241
|
Length = 277 |
| >gnl|CDD|236898 PRK11308, dppF, dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 101 bits (253), Expect = 5e-23
Identities = 66/220 (30%), Positives = 103/220 (46%), Gaps = 40/220 (18%)
Query: 228 FSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKS---LQLKWLREQMG 284
F+++ GKT A VG SG GKST+ ++ + PT G++ G DL K LR+++
Sbjct: 36 FTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKADPEAQKLLRQKIQ 95
Query: 285 LVSQEP-----------ALFATSIANNILLGKEDASMDRVIEAAKAANAHSFVE--GL-P 330
+V Q P + + N L A + A + + GL P
Sbjct: 96 IVFQNPYGSLNPRKKVGQILEEPLLINTSLSA----------AERREKALAMMAKVGLRP 145
Query: 331 DGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIM 390
+ Y SGGQ+QRIAIARA++ +P +++ DE SALD + + L +M
Sbjct: 146 EHYDRY----PHMFSGGQRQRIAIARALMLDPDVVVADEPVSALDVS---VQAQVLNLMM 198
Query: 391 S-----NRTTIVVAHRLSTVRDV-DTIMVLKNGQVVESGT 424
+ + ++H LS V + D +MV+ G+ VE GT
Sbjct: 199 DLQQELGLSYVFISHDLSVVEHIADEVMVMYLGRCVEKGT 238
|
Length = 327 |
| >gnl|CDD|172756 PRK14268, PRK14268, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 99.3 bits (247), Expect = 5e-23
Identities = 69/241 (28%), Positives = 114/241 (47%), Gaps = 24/241 (9%)
Query: 834 NIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYD----- 888
I++ N++ Y + + +N+++++ A++G SG GKST I + R D
Sbjct: 12 QIKVENLNLWYGEKQAL---KNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNC 68
Query: 889 PISGTVLIDGYDI--RTLNLRSLRRKIGLVQQEPALFSTTIYENIKYGNEDASEIELMKA 946
I G V I+G DI +++ LR+ +G+V Q+P F +IY+N+ YG +
Sbjct: 69 RIEGKVSIEGEDIYEPDVDVVELRKNVGMVFQKPNPFPMSIYDNVAYGPR-------IHG 121
Query: 947 TKAANAHGFISRM--PEGYQSHVGDR----GVQLSGGQKQRVAIARAILKNPSILLLDEA 1000
+ G + DR + LSGGQ+QR+ IAR + P I+L DE
Sbjct: 122 ANKKDLDGVVENALRSAALWDETSDRLKSPALSLSGGQQQRLCIARTLAVKPKIILFDEP 181
Query: 1001 TSALDTASENLIQEALDKLMEGRTTIMVAHRL-STIRNADKIAVLQQGKVAEIGSHEQLL 1059
TSALD S I++ + L + T ++V H + R +D G++ E G Q+
Sbjct: 182 TSALDPISTARIEDLIMNLKKDYTIVIVTHNMQQAARISDYTGFFLMGELIEFGQTRQIF 241
Query: 1060 R 1060
Sbjct: 242 H 242
|
Length = 258 |
| >gnl|CDD|215595 PLN03130, PLN03130, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 105 bits (265), Expect = 6e-23
Identities = 62/210 (29%), Positives = 106/210 (50%), Gaps = 16/210 (7%)
Query: 225 NLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMG 284
N+N V G A VG +G GK+++IS + P S ++ +R +
Sbjct: 635 NINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDASVV------------IRGTVA 682
Query: 285 LVSQEPALFATSIANNILLGKE-DASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQ 343
V Q +F ++ +NIL G D +R A ++ LP G T++GE G
Sbjct: 683 YVPQVSWIFNATVRDNILFGSPFDP--ERYERAIDVTALQHDLDLLPGGDLTEIGERGVN 740
Query: 344 LSGGQKQRIAIARAVLRNPKILLLDEATSALDAE-SELIVQRALEKIMSNRTTIVVAHRL 402
+SGGQKQR+++ARAV N + + D+ SALDA + + ++ + +T ++V ++L
Sbjct: 741 ISGGQKQRVSMARAVYSNSDVYIFDDPLSALDAHVGRQVFDKCIKDELRGKTRVLVTNQL 800
Query: 403 STVRDVDTIMVLKNGQVVESGTHVDLISKG 432
+ VD I+++ G + E GT+ +L + G
Sbjct: 801 HFLSQVDRIILVHEGMIKEEGTYEELSNNG 830
|
Length = 1622 |
| >gnl|CDD|172743 PRK14255, PRK14255, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 98.9 bits (246), Expect = 6e-23
Identities = 62/213 (29%), Positives = 103/213 (48%), Gaps = 20/213 (9%)
Query: 223 FENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYE-----PTSGKILLDGHDLKSLQLK 277
+ ++ + + A +GPSG GKST + + R+ + +G + L G ++ +
Sbjct: 21 LKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNED 80
Query: 278 --WLREQMGLVSQEPALFATSIANNILLG------KEDASMDRVIEAAKAANAHSFVEGL 329
LR+Q+G+V Q+P F SI N++ G K+ A +D +E + A +
Sbjct: 81 VVQLRKQVGMVFQQPNPFPFSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAA------I 134
Query: 330 PDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKI 389
D + + E LSGGQ+QR+ IAR + P ++LLDE TSALD S ++ L ++
Sbjct: 135 WDEVKDHLHESALSLSGGQQQRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLEL 194
Query: 390 MSNRTTIVVAHRLSTV-RDVDTIMVLKNGQVVE 421
T I+V H + R D G ++E
Sbjct: 195 RDQYTIILVTHSMHQASRISDKTAFFLTGNLIE 227
|
Length = 252 |
| >gnl|CDD|237457 PRK13647, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 99.4 bits (248), Expect = 6e-23
Identities = 65/228 (28%), Positives = 120/228 (52%), Gaps = 22/228 (9%)
Query: 206 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKIL 265
IE ++ F Y + L+ S+ G A +GP+G+GKST++ + +Y P G++
Sbjct: 5 IEVEDLHFRYKDGTK-ALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVK 63
Query: 266 LDGHDLKSLQLKWLREQMGLVSQEP--ALFATSIANNILLGKEDASMD------RVIEAA 317
+ G ++ + KW+R ++GLV Q+P +F++++ +++ G + +D RV EA
Sbjct: 64 VMGREVNAENEKWVRSKVGLVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEAL 123
Query: 318 KAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAE 377
KA F + P LS GQK+R+AIA + +P +++LDE + LD
Sbjct: 124 KAVRMWDFRDKPP-----------YHLSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPR 172
Query: 378 SELIVQRALEKIMSNRTTIVVA-HRLSTVRD-VDTIMVLKNGQVVESG 423
+ + L+++ + T++VA H + + D ++VLK G+V+ G
Sbjct: 173 GQETLMEILDRLHNQGKTVIVATHDVDLAAEWADQVIVLKEGRVLAEG 220
|
Length = 274 |
| >gnl|CDD|182592 PRK10619, PRK10619, histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 99.3 bits (247), Expect = 6e-23
Identities = 77/247 (31%), Positives = 120/247 (48%), Gaps = 40/247 (16%)
Query: 852 IFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTL------- 904
+ + ++L+ +AG ++++G SGSGKST + + P G+++++G I +
Sbjct: 20 VLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQL 79
Query: 905 ------NLRSLRRKIGLVQQEPALFS-TTIYENIK--------YGNEDASEIELMKATKA 949
LR LR ++ +V Q L+S T+ EN+ ++A E +A K
Sbjct: 80 KVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARE----RAVKY 135
Query: 950 ANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASE 1009
G R Y H LSGGQ+QRV+IARA+ P +LL DE TSALD
Sbjct: 136 LAKVGIDERAQGKYPVH-------LSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELV 188
Query: 1010 NLIQEALDKLM-EGRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGSHEQLLRKENGIYK 1067
+ + +L EG+T ++V H + R+ + + L QGK+ E G+ EQL
Sbjct: 189 GEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGAPEQLFGN-----P 243
Query: 1068 QLIRLQQ 1074
Q RLQQ
Sbjct: 244 QSPRLQQ 250
|
Length = 257 |
| >gnl|CDD|132027 TIGR02982, heterocyst_DevA, ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Score = 97.8 bits (244), Expect = 7e-23
Identities = 66/209 (31%), Positives = 108/209 (51%), Gaps = 18/209 (8%)
Query: 852 IFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLN---LRS 908
+ ++NL+++ G + + G SGSGK+T+++L+ G++ + G ++ + L
Sbjct: 20 VLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQ 79
Query: 909 LRRKIGLVQQEPALF-STTIYENIKYGNEDASEIELMKATKAANAHGFISRMPE--GYQS 965
LRR IG + Q L T +N++ +EL A M E G
Sbjct: 80 LRRNIGYIFQAHNLLGFLTARQNVQMA------LELQPNLSYQEARERARAMLEAVGLGD 133
Query: 966 HVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLM--EGR 1023
H+ LSGGQKQRVAIARA++ P ++L DE T+ALD+ S + E + KL +G
Sbjct: 134 HLDYYPHNLSGGQKQRVAIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGC 193
Query: 1024 TTIMVAH--RLSTIRNADKIAVLQQGKVA 1050
T ++V H R+ + AD+I ++ GK+
Sbjct: 194 TILIVTHDNRILDV--ADRIVHMEDGKLL 220
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. Length = 220 |
| >gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 105 bits (264), Expect = 8e-23
Identities = 63/240 (26%), Positives = 123/240 (51%), Gaps = 19/240 (7%)
Query: 844 YPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRT 903
+ + P + + ++++ V G+ V+G +GSGKST++ ++ ++ G V +
Sbjct: 668 FELEPKV-LLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEISEGRVWAE------ 720
Query: 904 LNLRSLRRKIGLVQQEPALFSTTIYENIKYGNEDASEIELMKATKAANAHGFISRMPEGY 963
R I V Q+ + + T+ NI + +E+ + L A + + ++++ G
Sbjct: 721 -------RSIAYVPQQAWIMNATVRGNILFFDEEDAA-RLADAVRVSQLEADLAQLGGGL 772
Query: 964 QSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDT-ASENLIQEALDKLMEG 1022
++ +G++GV LSGGQK RV++ARA+ N + LLD+ SALD E +++E + G
Sbjct: 773 ETEIGEKGVNLSGGQKARVSLARAVYANRDVYLLDDPLSALDAHVGERVVEECFLGALAG 832
Query: 1023 RTTIMVAHRLSTIRNADKIAVLQQGKVAEIGSHEQLLRKENGIYKQLIRLQQDKNPEAME 1082
+T ++ H++ + AD + L G+V GS +R +Y L + +N ++ E
Sbjct: 833 KTRVLATHQVHVVPRADYVVALGDGRVEFSGSSADFMR--TSLYATL-AAELKENKDSKE 889
|
Length = 1560 |
| >gnl|CDD|224026 COG1101, PhnK, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 98.9 bits (247), Expect = 8e-23
Identities = 67/227 (29%), Positives = 113/227 (49%), Gaps = 13/227 (5%)
Query: 835 IELRN--VSFKYPVRPDIT-IFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPIS 891
I L N +F + P L+L+++ G + V+G +G+GKST+++ + P S
Sbjct: 2 ISLSNATKTF-FKGTPLEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTS 60
Query: 892 GTVLIDGYDIRTLNLRSLRRKIGLVQQEPALFST---TIYENIKYGNEDASEIELMKATK 948
G +LIDG D+ ++ + V Q+P + TI EN+ + L A
Sbjct: 61 GQILIDGVDVTKKSVAKRANLLARVFQDPLAGTAPELTIEENLALAESRGKKRGLSSALN 120
Query: 949 AANAHGF---ISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALD 1005
F ++R+ G ++ + DR LSGGQ+Q +++ A L P ILLLDE T+ALD
Sbjct: 121 ERRRSSFRERLARLGLGLENRLSDRIGLLSGGQRQALSLLMATLHPPKILLLDEHTAALD 180
Query: 1006 TASENLIQEALDKLMEGR--TTIMVAHRL-STIRNADKIAVLQQGKV 1049
+ + E K++E TT+MV H + + +++ +L GK+
Sbjct: 181 PKTAEFVMELTAKIVEEHKLTTLMVTHNMEDALDYGNRLIMLHSGKI 227
|
Length = 263 |
| >gnl|CDD|183044 PRK11231, fecE, iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 98.9 bits (247), Expect = 8e-23
Identities = 66/227 (29%), Positives = 107/227 (47%), Gaps = 28/227 (12%)
Query: 851 TIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLR 910
I +L+L + G+ A++G +G GKST++ R P SGTV + I L+ R L
Sbjct: 16 RILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLA 75
Query: 911 RKIGLV-QQEPALFSTTIYENIKYGNE-------DASEIELMKATKAANAHGFISRMPEG 962
R++ L+ Q T+ E + YG S + + +A M +
Sbjct: 76 RRLALLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQA---------MEQT 126
Query: 963 YQSHVGDRGV-QLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLM- 1020
+H+ DR + LSGGQ+QR +A + ++ ++LLDE T+ LD Q L +LM
Sbjct: 127 RINHLADRRLTDLSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLDINH----QVELMRLMR 182
Query: 1021 ----EGRTTIMVAHRLS-TIRNADKIAVLQQGKVAEIGSHEQLLRKE 1062
+G+T + V H L+ R D + VL G V G+ E+++
Sbjct: 183 ELNTQGKTVVTVLHDLNQASRYCDHLVVLANGHVMAQGTPEEVMTPG 229
|
Length = 255 |
| >gnl|CDD|184588 PRK14243, PRK14243, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 98.7 bits (246), Expect = 9e-23
Identities = 69/210 (32%), Positives = 102/210 (48%), Gaps = 36/210 (17%)
Query: 854 ENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPI-----SGTVLIDGYDI--RTLNL 906
+N+ L + + A +G SG GKST++ R D I G V G ++ ++
Sbjct: 27 KNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDP 86
Query: 907 RSLRRKIGLVQQEPALFSTTIYENIKYGNEDASEIELMKATKAANAHGFISRMPEGYQ-- 964
+RR+IG+V Q+P F +IY+NI YG A +G+ M E +
Sbjct: 87 VEVRRRIGMVFQKPNPFPKSIYDNIAYG---------------ARINGYKGDMDELVERS 131
Query: 965 -------SHVGDR----GVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQ 1013
V D+ G+ LSGGQ+QR+ IARAI P ++L+DE SALD S I+
Sbjct: 132 LRQAALWDEVKDKLKQSGLSLSGGQQQRLCIARAIAVQPEVILMDEPCSALDPISTLRIE 191
Query: 1014 EALDKLMEGRTTIMVAHRL-STIRNADKIA 1042
E + +L E T I+V H + R +D A
Sbjct: 192 ELMHELKEQYTIIIVTHNMQQAARVSDMTA 221
|
Length = 264 |
| >gnl|CDD|226635 COG4161, ArtP, ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 98.4 bits (245), Expect = 9e-23
Identities = 70/240 (29%), Positives = 115/240 (47%), Gaps = 36/240 (15%)
Query: 835 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTV 894
I+L ++ Y +F+ + L G +L ++G SG+GKS+++ ++ P SGT+
Sbjct: 3 IQLNGINCFYGAHQ--ALFD-ITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTL 59
Query: 895 LIDG--YDIRTL----NLRSLRRKIGLVQQEPALFS-TTIYENI--------KYGNEDAS 939
I G +D +R LRR +G+V Q+ L+ T+ EN+ + A
Sbjct: 60 NIAGNHFDFSKTPSDKAIRDLRRNVGMVFQQYNLWPHLTVQENLIEAPCRVLGLSKDQAL 119
Query: 940 E--IELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLL 997
+L+K + + R P + LSGGQ+QRVAIARA++ P +LL
Sbjct: 120 ARAEKLLKRLRLKP---YADRYP-----------LHLSGGQQQRVAIARALMMEPQVLLF 165
Query: 998 DEATSALDTASENLIQEALDKLME-GRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGSH 1055
DE T+ALD I + +L E G T ++V H + R A ++ ++ G + E G
Sbjct: 166 DEPTAALDPEITAQIVSIIKELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDA 225
|
Length = 242 |
| >gnl|CDD|224044 COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 98.5 bits (246), Expect = 9e-23
Identities = 69/257 (26%), Positives = 113/257 (43%), Gaps = 42/257 (16%)
Query: 819 QPDDPASKEVTEIKGN---IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSG 875
P+ K+ I+ N IEL+NVS + + I +L+ +V+ G A+VG +G+G
Sbjct: 13 LPEPKEPKKRHPIEINEPLIELKNVSVRRNGKK---ILGDLSWQVNPGEHWAIVGPNGAG 69
Query: 876 KSTVISLVMRFYDPISGTVLIDGYDIRTLNLRS-LRRKIGLVQQE--------------- 919
K+T++SL+ + P SG V + G LR++IGLV E
Sbjct: 70 KTTLLSLLTGEHPPSSGDVTLLGRRFGKGETIFELRKRIGLVSSELHERFRVRETVRDVV 129
Query: 920 -PALFST-TIYENIKYGNEDASEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGG 977
F++ IY+ ED + +L A G + S LS G
Sbjct: 130 LSGFFASIGIYQ------EDLTAEDLAAAQWLLELLGAKHLADRPFGS--------LSQG 175
Query: 978 QKQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLME---GRTTIMVAHRLST 1034
+++RV IARA++K+P +L+LDE LD + + L++L + V H
Sbjct: 176 EQRRVLIARALVKDPELLILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHHAEE 235
Query: 1035 I-RNADKIAVLQQGKVA 1050
I +L++G+V
Sbjct: 236 IPPCFTHRLLLKEGEVV 252
|
Length = 257 |
| >gnl|CDD|216049 pfam00664, ABC_membrane, ABC transporter transmembrane region | Back alignment and domain information |
|---|
Score = 98.9 bits (247), Expect = 1e-22
Identities = 50/155 (32%), Positives = 79/155 (50%)
Query: 4 GHALRYLSQFFVGFAVGFTSVWQLTLLTLAVVPLIAVAGGAYTITMSTLSEKGEAAYGEA 63
G + L+ GF V F W+LTL+ LA++PL+ + + L+ K + AY +A
Sbjct: 120 GLFFQSLATVVGGFIVMFYYGWKLTLVLLAILPLLILLSAVLAKKLRKLNRKEQKAYAKA 179
Query: 64 GKVAEEIISQVRAVYAFVGEAKAIESYSHSLKEALKQGKKSGVAKGIGVGLTYGLLFCAW 123
G VAEE +S +R V AF E +E Y +L++A K G K + G+ G+T + + ++
Sbjct: 180 GSVAEESLSGIRTVKAFGREEYELERYDKALEDAEKAGIKKAITAGLSFGITQLISYLSY 239
Query: 124 ALLLWYAGILVRHGDTNGGKAFTTIINVIFSGFAL 158
AL LW+ LV G + G F + + L
Sbjct: 240 ALALWFGAYLVISGGLSVGTVFAFLSLGLQLSGPL 274
|
This family represents a unit of six transmembrane helices. Many members of the ABC transporter family (pfam00005) have two such regions. Length = 274 |
| >gnl|CDD|237652 PRK14275, PRK14275, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 99.2 bits (247), Expect = 1e-22
Identities = 64/201 (31%), Positives = 106/201 (52%), Gaps = 24/201 (11%)
Query: 237 AFVGPSGSGKSTIISMVQRLYE-----PTSGKILLDGHDL--KSLQLKWLREQMGLVSQE 289
A +GPSG GKST + + R+ + T+G ++ DG D+ K LR+++G+V Q+
Sbjct: 69 AIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTDEVLLRKKIGMVFQK 128
Query: 290 PALFATSIANNILLG------KEDASMDRVIEAA--KAANAHSFVEGLPDGYQTQVGEGG 341
P F SI +NI G + ++ ++E + KAA L D ++ +
Sbjct: 129 PNPFPKSIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAA--------LWDEVSDRLDKNA 180
Query: 342 TQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHR 401
LSGGQ+QR+ +AR + P+ILLLDE TSALD ++ ++ ++++ + T ++V H
Sbjct: 181 LGLSGGQQQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRGSYTIMIVTHN 240
Query: 402 LSTVRDV-DTIMVLKNGQVVE 421
+ V D M G +VE
Sbjct: 241 MQQASRVSDYTMFFYEGVLVE 261
|
Length = 286 |
| >gnl|CDD|226963 COG4604, CeuD, ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 97.8 bits (244), Expect = 2e-22
Identities = 68/248 (27%), Positives = 130/248 (52%), Gaps = 16/248 (6%)
Query: 835 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTV 894
I + NVS Y + + ++++L + G +++G +G+GKST++S++ R SG +
Sbjct: 2 ITIENVSKSYGTKV---VLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEI 58
Query: 895 LIDGYDIRTLNLRSLRRKIGLVQQEPALFST-TIYENIKYGNEDASEIELMKATKAANAH 953
IDG ++ + + L +K+ +++QE + S T+ + + +G S+ L K
Sbjct: 59 TIDGLELTSTPSKELAKKLSILKQENHINSRLTVRDLVGFGRFPYSQGRLTK-----EDR 113
Query: 954 GFISRMPEGYQ-SHVGDRGV-QLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENL 1011
I+ E + DR + +LSGGQ+QR IA + ++ +LLDE + LD
Sbjct: 114 RIINEAIEYLHLEDLSDRYLDELSGGQRQRAFIAMVLAQDTDYVLLDEPLNNLDMKHSVQ 173
Query: 1012 IQEALDKLME--GRTTIMVAHRLS-TIRNADKIAVLQQGKVAEIGSHEQLLRKEN--GIY 1066
I + L +L + G+T ++V H ++ +D I L+ GKV + GS +++++ E IY
Sbjct: 174 IMKILRRLADELGKTIVVVLHDINFASCYSDHIVALKNGKVVKQGSPDEIIQPEILSEIY 233
Query: 1067 KQLIRLQQ 1074
I +++
Sbjct: 234 DMDIPVEE 241
|
Length = 252 |
| >gnl|CDD|163585 TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 97.6 bits (243), Expect = 2e-22
Identities = 60/235 (25%), Positives = 112/235 (47%), Gaps = 18/235 (7%)
Query: 205 QIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKI 264
+ S V ++ R + + ++ + G +GP+GSGKST++ ++ P +G +
Sbjct: 1 GLRLSRVSWSAGGRL--IVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTV 58
Query: 265 LLDGHDLKSLQLKWLREQMGLVSQE-PALFATSIANNILLGKED------ASMDRVIEAA 317
L G DL L + ++ LV Q+ ++ + + LG+
Sbjct: 59 DLAGVDLHGLSRRARARRVALVEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVV 118
Query: 318 KAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAE 377
A A + + L D + LSGG++QR+ +ARA+ + PK+LLLDE T+ LD
Sbjct: 119 DRALARTELSHLAD-------RDMSTLSGGERQRVHVARALAQEPKLLLLDEPTNHLDVR 171
Query: 378 SELIVQRALEKIMSNRTTIVVA-HRLS-TVRDVDTIMVLKNGQVVESGTHVDLIS 430
++L + ++ + T+V A H L+ D ++VL G+VV +G ++++
Sbjct: 172 AQLETLALVRELAATGVTVVAALHDLNLAASYCDHVVVLDGGRVVAAGPPREVLT 226
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. Length = 256 |
| >gnl|CDD|184196 PRK13636, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 98.0 bits (244), Expect = 2e-22
Identities = 72/246 (29%), Positives = 125/246 (50%), Gaps = 28/246 (11%)
Query: 835 IELRNVSFKYPVRPDIT-IFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGT 893
+++ +++ Y D T + +N+ + G A++G +G+GKST+ + P SG
Sbjct: 6 LKVEELNYNYS---DGTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGR 62
Query: 894 VLIDG--YDIRTLNLRSLRRKIGLVQQEP--ALFSTTIYENIKYG--NEDASEIELMKAT 947
+L DG D L LR +G+V Q+P LFS ++Y+++ +G N E E+ K
Sbjct: 63 ILFDGKPIDYSRKGLMKLRESVGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKRV 122
Query: 948 KAANAHGFISRMPEGYQSHVGDRGVQ-LSGGQKQRVAIARAILKNPSILLLDEATSALDT 1006
A I H+ D+ LS GQK+RVAIA ++ P +L+LDE T+ LD
Sbjct: 123 DNALKRTGIE--------HLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDP 174
Query: 1007 ASENLIQEALDKLME--GRTTIMVAHRLSTIR-NADKIAVLQQGKV------AEIGSHEQ 1057
+ I + L ++ + G T I+ H + + D + V+++G+V E+ + ++
Sbjct: 175 MGVSEIMKLLVEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFAEKE 234
Query: 1058 LLRKEN 1063
+LRK N
Sbjct: 235 MLRKVN 240
|
Length = 283 |
| >gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 103 bits (258), Expect = 3e-22
Identities = 63/215 (29%), Positives = 113/215 (52%), Gaps = 17/215 (7%)
Query: 215 YPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSL 274
+ P ++ +++ SV GK +G +GSGKST++ + +E + G++
Sbjct: 668 FELEPKVLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEISEGRV---------- 717
Query: 275 QLKWLREQMGLVSQEPALFATSIANNILL-GKEDASMDRVIEAAKAANAHSFVEGLPDGY 333
W + V Q+ + ++ NIL +EDA+ R+ +A + + + + L G
Sbjct: 718 ---WAERSIAYVPQQAWIMNATVRGNILFFDEEDAA--RLADAVRVSQLEADLAQLGGGL 772
Query: 334 QTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAE-SELIVQRALEKIMSN 392
+T++GE G LSGGQK R+++ARAV N + LLD+ SALDA E +V+ ++
Sbjct: 773 ETEIGEKGVNLSGGQKARVSLARAVYANRDVYLLDDPLSALDAHVGERVVEECFLGALAG 832
Query: 393 RTTIVVAHRLSTVRDVDTIMVLKNGQVVESGTHVD 427
+T ++ H++ V D ++ L +G+V SG+ D
Sbjct: 833 KTRVLATHQVHVVPRADYVVALGDGRVEFSGSSAD 867
|
Length = 1560 |
| >gnl|CDD|237649 PRK14254, PRK14254, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 97.9 bits (244), Expect = 3e-22
Identities = 61/211 (28%), Positives = 108/211 (51%), Gaps = 19/211 (9%)
Query: 224 ENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYE-----PTSGKILLDGHDLKSLQLK- 277
++++ + + A +GPSG GKST + + R+ + G++ G ++ +
Sbjct: 56 DDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVDP 115
Query: 278 -WLREQMGLVSQEPALFATSIANNILLG----KEDASMDRVIEAAKAANAHSFVEGLPDG 332
LR ++G+V Q+P F SI +N+ G D +D +E + A L D
Sbjct: 116 VALRRRIGMVFQKPNPFPKSIYDNVAYGLKIQGYDGDIDERVEESLRRAA------LWDE 169
Query: 333 YQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSN 392
+ Q+ G LSGGQ+QR+ IARA+ +P+++L+DE SALD + ++ +E++
Sbjct: 170 VKDQLDSSGLDLSGGQQQRLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAEE 229
Query: 393 RTTIVVAHRL-STVRDVD-TIMVLKNGQVVE 421
T ++V H + R D T + L G++VE
Sbjct: 230 YTVVIVTHNMQQAARISDKTAVFLTGGELVE 260
|
Length = 285 |
| >gnl|CDD|183063 PRK11264, PRK11264, putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Score = 96.7 bits (241), Expect = 3e-22
Identities = 78/232 (33%), Positives = 119/232 (51%), Gaps = 39/232 (16%)
Query: 851 TIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDI---RTLN-- 905
T+ ++L+V G +A++G SGSGK+T++ + P +GT+ + I R+L+
Sbjct: 17 TVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQ 76
Query: 906 ---LRSLRRKIGLVQQEPALFS-TTIYENIKYGNEDASEIE---LMKATKAANAHGFISR 958
+R LR+ +G V Q LF T+ ENI IE ++K A +R
Sbjct: 77 KGLIRQLRQHVGFVFQNFNLFPHRTVLENI---------IEGPVIVKGEPKEEA---TAR 124
Query: 959 MPEGYQSHVGDRGVQ------LSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLI 1012
E + VG G + LSGGQ+QRVAIARA+ P ++L DE TSALD L+
Sbjct: 125 ARE-LLAKVGLAGKETSYPRRLSGGQQQRVAIARALAMRPEVILFDEPTSALDP---ELV 180
Query: 1013 QEALDKLM----EGRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGSHEQLL 1059
E L+ + E RT ++V H +S R+ AD+ + QG++ E G + L
Sbjct: 181 GEVLNTIRQLAQEKRTMVIVTHEMSFARDVADRAIFMDQGRIVEQGPAKALF 232
|
Length = 250 |
| >gnl|CDD|172735 PRK14247, PRK14247, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 96.9 bits (241), Expect = 3e-22
Identities = 69/217 (31%), Positives = 108/217 (49%), Gaps = 22/217 (10%)
Query: 222 VFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYE-----PTSGKILLDGHDLKSLQL 276
V + +N + A +GPSGSGKST++ + RL E SG++ LDG D+ + +
Sbjct: 18 VLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDV 77
Query: 277 KWLREQMGLVSQEPALFAT-SIANNILLG-------KEDASM-DRVIEAAKAANAHSFVE 327
LR ++ +V Q P SI N+ LG K + +RV A + A
Sbjct: 78 IELRRRVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQ------ 131
Query: 328 GLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALE 387
L D + ++ +LSGGQ+QR+ IARA+ P++LL DE T+ LD E+ ++
Sbjct: 132 -LWDEVKDRLDAPAGKLSGGQQQRLCIARALAFQPEVLLADEPTANLDPENTAKIESLFL 190
Query: 388 KIMSNRTTIVVAH-RLSTVRDVDTIMVLKNGQVVESG 423
++ + T ++V H R D + L GQ+VE G
Sbjct: 191 ELKKDMTIVLVTHFPQQAARISDYVAFLYKGQIVEWG 227
|
Length = 250 |
| >gnl|CDD|172735 PRK14247, PRK14247, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 96.9 bits (241), Expect = 3e-22
Identities = 68/230 (29%), Positives = 121/230 (52%), Gaps = 17/230 (7%)
Query: 835 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYD-----P 889
IE+R++ + + + + +NL++ A++G SGSGKST++ + R +
Sbjct: 4 IEIRDLKVSFG---QVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEAR 60
Query: 890 ISGTVLIDGYDIRTLNLRSLRRKIGLVQQEPALFST-TIYENIKYG---NEDA-SEIELM 944
+SG V +DG DI +++ LRR++ +V Q P +I+EN+ G N S+ EL
Sbjct: 61 VSGEVYLDGQDIFKMDVIELRRRVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKELQ 120
Query: 945 KATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSAL 1004
+ + A +++ + + + +LSGGQ+QR+ IARA+ P +LL DE T+ L
Sbjct: 121 ERVRWALEK---AQLWDEVKDRLDAPAGKLSGGQQQRLCIARALAFQPEVLLADEPTANL 177
Query: 1005 DTASENLIQEALDKLMEGRTTIMVAH-RLSTIRNADKIAVLQQGKVAEIG 1053
D + I+ +L + T ++V H R +D +A L +G++ E G
Sbjct: 178 DPENTAKIESLFLELKKDMTIVLVTHFPQQAARISDYVAFLYKGQIVEWG 227
|
Length = 250 |
| >gnl|CDD|213187 cd03220, ABC_KpsT_Wzt, ATP-binding cassette component of polysaccharide transport system | Back alignment and domain information |
|---|
Score = 96.1 bits (240), Expect = 3e-22
Identities = 56/213 (26%), Positives = 94/213 (44%), Gaps = 28/213 (13%)
Query: 218 RPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLK 277
++++F V G+ +G +G+GKST++ ++ +Y P SG + + G ++
Sbjct: 33 GEFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRG------RVS 86
Query: 278 WLRE-----QMGLVSQEPALFATSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDG 332
L L +E N LLG +D I+ F E L D
Sbjct: 87 SLLGLGGGFNPELTGRENIYL-----NGRLLGLSRKEIDEKIDE-----IIEFSE-LGDF 135
Query: 333 YQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSN 392
V S G K R+A A A P ILL+DE + DA + QR L +++
Sbjct: 136 IDLPVKT----YSSGMKARLAFAIATALEPDILLIDEVLAVGDAAFQEKCQRRLRELLKQ 191
Query: 393 -RTTIVVAHRLSTVRDV-DTIMVLKNGQVVESG 423
+T I+V+H S+++ + D +VL+ G++ G
Sbjct: 192 GKTVILVSHDPSSIKRLCDRALVLEKGKIRFDG 224
|
The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2. Length = 224 |
| >gnl|CDD|184208 PRK13649, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 97.5 bits (243), Expect = 4e-22
Identities = 71/235 (30%), Positives = 123/235 (52%), Gaps = 17/235 (7%)
Query: 206 IEFSEVCFAY----PSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTS 261
I V + Y P +F ++N +++ G AF+G +GSGKSTI+ ++ L+ PT
Sbjct: 3 INLQNVSYTYQAGTPFEGRALF-DVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQ 61
Query: 262 GKILLDGHDL----KSLQLKWLREQMGLVSQ--EPALFATSIANNILLGKEDASMDRVIE 315
G + +D + K+ +K +R+++GLV Q E LF ++ ++ G ++ + + E
Sbjct: 62 GSVRVDDTLITSTSKNKDIKQIRKKVGLVFQFPESQLFEETVLKDVAFGPQNFGVSQ-EE 120
Query: 316 AAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALD 375
A A + G+ + + +LSGGQ +R+AIA + PKIL+LDE T+ LD
Sbjct: 121 AEALAREKLALVGISESL---FEKNPFELSGGQMRRVAIAGILAMEPKILVLDEPTAGLD 177
Query: 376 AESELIVQRALEKIMSNRTTIV-VAHRLSTVRD-VDTIMVLKNGQVVESGTHVDL 428
+ + +K+ + TIV V H + V + D + VL+ G++V SG D+
Sbjct: 178 PKGRKELMTLFKKLHQSGMTIVLVTHLMDDVANYADFVYVLEKGKLVLSGKPKDI 232
|
Length = 280 |
| >gnl|CDD|172739 PRK14251, PRK14251, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 96.6 bits (240), Expect = 4e-22
Identities = 68/219 (31%), Positives = 111/219 (50%), Gaps = 24/219 (10%)
Query: 225 NLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYE-----PTSGKILLDGHDLKS--LQLK 277
+L+F + + A +GPSG GKST + + R+ + +G+I +G ++ + L
Sbjct: 24 SLDF--EEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDLV 81
Query: 278 WLREQMGLVSQEPALFATSIANNILLGKEDASM-------DRVIEAAKAANAHSFVEGLP 330
LR+++G+V Q+P F S+ +N+ G + A + RV E+ K A +
Sbjct: 82 ELRKEVGMVFQQPTPFPFSVYDNVAYGLKIAGVKDKELIDQRVEESLKQA-------AIW 134
Query: 331 DGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIM 390
+ + SGGQ+QRI IARA+ PK++LLDE TSALD S ++ L ++
Sbjct: 135 KETKDNLDRNAQAFSGGQQQRICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELK 194
Query: 391 SNRTTIVVAHRLSTV-RDVDTIMVLKNGQVVESGTHVDL 428
T I+V H L R D L NG ++E+G ++
Sbjct: 195 HQYTFIMVTHNLQQAGRISDQTAFLMNGDLIEAGPTEEM 233
|
Length = 251 |
| >gnl|CDD|237647 PRK14248, PRK14248, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 96.6 bits (240), Expect = 5e-22
Identities = 63/215 (29%), Positives = 108/215 (50%), Gaps = 24/215 (11%)
Query: 225 NLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYE-----PTSGKILLDGHDL--KSLQLK 277
+++ ++ A +GPSG GKST + + R+ + + G+IL +G ++ ++ +
Sbjct: 39 DISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNINVV 98
Query: 278 WLREQMGLVSQEPALFATSIANNILLG------KEDASMDRVIEAA--KAANAHSFVEGL 329
LR ++G+V Q+P F SI NNI + + +D ++E + KAA L
Sbjct: 99 NLRREIGMVFQKPNPFPKSIYNNITHALKYAGERRKSVLDEIVEESLTKAA--------L 150
Query: 330 PDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKI 389
D + ++ LSGGQ+QR+ IAR + P +LLLDE SALD S ++ + ++
Sbjct: 151 WDEVKDRLHSSALSLSGGQQQRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITEL 210
Query: 390 MSNRTTIVVAHRL-STVRDVDTIMVLKNGQVVESG 423
+ I+V H + +R D NG +VE
Sbjct: 211 KEEYSIIIVTHNMQQALRVSDRTAFFLNGDLVEYD 245
|
Length = 268 |
| >gnl|CDD|131197 TIGR02142, modC_ABC, molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 98.6 bits (246), Expect = 5e-22
Identities = 67/215 (31%), Positives = 113/215 (52%), Gaps = 15/215 (6%)
Query: 226 LNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDL----KSLQLKWLRE 281
+F++ A G SGSGK+T+I ++ L P G+I+L+G L K + L +
Sbjct: 16 ADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKR 75
Query: 282 QMGLVSQEPALFA-TSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEG 340
++G V QE LF S+ N+ G M R + + + +E L G +G
Sbjct: 76 RIGYVFQEARLFPHLSVRGNLRYG-----MKRARPSERRISFERVIELL--GIGHLLGRL 128
Query: 341 GTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMS--NRTTIVV 398
+LSGG+KQR+AI RA+L +P++LL+DE +ALD + + LE++ + + V
Sbjct: 129 PGRLSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEILPYLERLHAEFGIPILYV 188
Query: 399 AHRLSTV-RDVDTIMVLKNGQVVESGTHVDLISKG 432
+H L V R D ++VL++G+V +G ++ +
Sbjct: 189 SHSLQEVLRLADRVVVLEDGRVAAAGPIAEVWASP 223
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter [Transport and binding proteins, Anions]. Length = 354 |
| >gnl|CDD|223473 COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 96.1 bits (240), Expect = 6e-22
Identities = 65/217 (29%), Positives = 100/217 (46%), Gaps = 27/217 (12%)
Query: 224 ENLNFSVDAGKTFAFVGPSGSGKSTI--ISMVQRLYEPTSGKILLDGHDLKSLQL-KWLR 280
+ +N +V G+ A +GP+GSGKST+ M YE T G+IL DG D+ L + R
Sbjct: 21 KGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILELSPDERAR 80
Query: 281 EQMGLVSQEPALFA-------TSIANNILLGKEDASMD---RVIEAAKAANAHSFVEGLP 330
+ L Q P A N G + + E A+ GL
Sbjct: 81 AGIFLAFQYPVEIPGVTNSDFLRAAMNARRGARGILPEFIKELKEKAELL-------GLD 133
Query: 331 DGYQTQ-VGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKI 389
+ + + V EG SGG+K+R I + +L PK+ +LDE S LD ++ IV + +
Sbjct: 134 EEFLERYVNEG---FSGGEKKRNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINAL 190
Query: 390 MS-NRTTIVVAH--RLSTVRDVDTIMVLKNGQVVESG 423
R +++ H RL D + VL +G++V+SG
Sbjct: 191 REEGRGVLIITHYQRLLDYIKPDKVHVLYDGRIVKSG 227
|
Length = 251 |
| >gnl|CDD|213233 cd03266, ABC_NatA_sodium_exporter, ATP-binding cassette domain of the Na+ transporter | Back alignment and domain information |
|---|
Score = 95.1 bits (237), Expect = 6e-22
Identities = 55/225 (24%), Positives = 108/225 (48%), Gaps = 14/225 (6%)
Query: 835 IELRNVSFKY-PVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGT 893
I ++ ++ V+ + + ++ V G ++G +G+GK+T + ++ +P +G
Sbjct: 2 ITADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGF 61
Query: 894 VLIDGYDIRTLNLRSLRRKIGLVQQEPALFS-TTIYENIKYGNEDASEIELMKATKAANA 952
+DG+D+ RR++G V L+ T EN++Y + K
Sbjct: 62 ATVDGFDVVK-EPAEARRRLGFVSDSTGLYDRLTARENLEYFAG-------LYGLKGDEL 113
Query: 953 HGFISRMPE--GYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASEN 1010
+ + + G + + R S G +Q+VAIARA++ +P +LLLDE T+ LD +
Sbjct: 114 TARLEELADRLGMEELLDRRVGGFSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATR 173
Query: 1011 LIQEALDKLMEGRTTIMVA-HRLSTI-RNADKIAVLQQGKVAEIG 1053
++E + +L I+ + H + + R D++ VL +G+V G
Sbjct: 174 ALREFIRQLRALGKCILFSTHIMQEVERLCDRVVVLHRGRVVYEG 218
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein. Length = 218 |
| >gnl|CDD|184200 PRK13640, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 96.8 bits (241), Expect = 7e-22
Identities = 70/241 (29%), Positives = 113/241 (46%), Gaps = 25/241 (10%)
Query: 835 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPIS--- 891
+E ++VSF YP +++ + G A++G +GSGKST+ L+ P
Sbjct: 6 VEFKHVSFTYPDSKK-PALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPN 64
Query: 892 GTVLIDGYDIRTLNLRSLRRKIGLVQQEP--ALFSTTIYENIKYG--NEDASEIELMKAT 947
+ +DG + + +R K+G+V Q P T+ +++ +G N E++K
Sbjct: 65 SKITVDGITLTAKTVWDIREKVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIKIV 124
Query: 948 KAANAH----GFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSA 1003
+ A +I P LSGGQKQRVAIA + P I++LDE+TS
Sbjct: 125 RDVLADVGMLDYIDSEPA-----------NLSGGQKQRVAIAGILAVEPKIIILDESTSM 173
Query: 1004 LDTASENLIQEALDKLME--GRTTIMVAHRLSTIRNADKIAVLQQGKVAEIGSHEQLLRK 1061
LD A + I + + KL + T I + H + AD++ VL GK+ GS ++ K
Sbjct: 174 LDPAGKEQILKLIRKLKKKNNLTVISITHDIDEANMADQVLVLDDGKLLAQGSPVEIFSK 233
Query: 1062 E 1062
Sbjct: 234 V 234
|
Length = 282 |
| >gnl|CDD|130256 TIGR01188, drrA, daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 97.1 bits (242), Expect = 8e-22
Identities = 57/208 (27%), Positives = 103/208 (49%), Gaps = 21/208 (10%)
Query: 226 LNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGL 285
+NF V G+ F F+GP+G+GK+T I M+ L PTSG + G+D+ + + +R +G+
Sbjct: 12 VNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVR-EPRKVRRSIGI 70
Query: 286 VSQEPALFA--TSIANNILLG-----KEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVG 338
V Q ++ T N ++G +D + +R E + E L + VG
Sbjct: 71 VPQYASVDEDLTGRENLEMMGRLYGLPKDEAEERAEELLE------LFE-LGEAADRPVG 123
Query: 339 EGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVV 398
SGG ++R+ IA +++ P +L LDE T+ LD + + + + TI++
Sbjct: 124 ----TYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDYIRALKEEGVTILL 179
Query: 399 -AHRLSTVRDV-DTIMVLKNGQVVESGT 424
H + + D I ++ +G+++ GT
Sbjct: 180 TTHYMEEADKLCDRIAIIDHGRIIAEGT 207
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc [Transport and binding proteins, Other]. Length = 302 |
| >gnl|CDD|182528 PRK10535, PRK10535, macrolide transporter ATP-binding /permease protein; Provisional | Back alignment and domain information |
|---|
Score = 101 bits (253), Expect = 8e-22
Identities = 71/222 (31%), Positives = 120/222 (54%), Gaps = 12/222 (5%)
Query: 835 IELRNVSFKYPV-RPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGT 893
+EL+++ YP + + + ++L + AG +A+VG SGSGKST+++++ P SGT
Sbjct: 5 LELKDIRRSYPSGEEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGT 64
Query: 894 VLIDGYDIRTLN---LRSLRRK-IGLVQQEPALFS-TTIYENIKYGNEDASEIELMKATK 948
+ G D+ TL+ L LRR+ G + Q L S T +N++ A L + +
Sbjct: 65 YRVAGQDVATLDADALAQLRREHFGFIFQRYHLLSHLTAAQNVEV---PAVYAGLERKQR 121
Query: 949 AANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTAS 1008
A + R+ G + V + QLSGGQ+QRV+IARA++ ++L DE T ALD+ S
Sbjct: 122 LLRAQELLQRL--GLEDRVEYQPSQLSGGQQQRVSIARALMNGGQVILADEPTGALDSHS 179
Query: 1009 ENLIQEALDKLME-GRTTIMVAHRLSTIRNADKIAVLQQGKV 1049
+ L +L + G T I+V H A+++ ++ G++
Sbjct: 180 GEEVMAILHQLRDRGHTVIIVTHDPQVAAQAERVIEIRDGEI 221
|
Length = 648 |
| >gnl|CDD|237451 PRK13631, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 97.2 bits (242), Expect = 8e-22
Identities = 66/223 (29%), Positives = 111/223 (49%), Gaps = 24/223 (10%)
Query: 222 VFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKI----LLDGHDL------ 271
N++++ + K + +G SGSGKST+++ L + G I + G
Sbjct: 41 ALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNHELI 100
Query: 272 ------KSLQLKWLREQMGLVSQEP--ALFATSIANNILLGKEDASMDRVIEAAKAANAH 323
K K LR ++ +V Q P LF +I +I+ G + + EA K A +
Sbjct: 101 TNPYSKKIKNFKELRRRVSMVFQFPEYQLFKDTIEKDIMFGPVALGVKK-SEAKKLAKFY 159
Query: 324 SFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESE-LIV 382
GL D Y + LSGGQK+R+AIA + P+IL+ DE T+ LD + E ++
Sbjct: 160 LNKMGLDDSY---LERSPFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMM 216
Query: 383 QRALEKIMSNRTTIVVAHRLSTVRDV-DTIMVLKNGQVVESGT 424
Q L+ +N+T V+ H + V +V D ++V+ G+++++GT
Sbjct: 217 QLILDAKANNKTVFVITHTMEHVLEVADEVIVMDKGKILKTGT 259
|
Length = 320 |
| >gnl|CDD|131816 TIGR02769, nickel_nikE, nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Score = 96.0 bits (239), Expect = 9e-22
Identities = 70/232 (30%), Positives = 115/232 (49%), Gaps = 14/232 (6%)
Query: 222 VFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSL---QLKW 278
V N++ S++ G+T +G SG GKST+ ++ L +P G + G DL L Q +
Sbjct: 26 VLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRKQRRA 85
Query: 279 LREQMGLVSQE-PALFATSIANNILLGKEDASMDRVIEAAKAANAHSFVE--GLPDGYQT 335
R + LV Q+ P+ + ++G+ + + E+ + A ++ GL
Sbjct: 86 FRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRSEDAD 145
Query: 336 QVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNRTT 395
++ QLSGGQ QRI IARA+ PK+++LDEA S LD + ++ L K+ T
Sbjct: 146 KLPR---QLSGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGT 202
Query: 396 --IVVAHRLSTVRDV-DTIMVLKNGQVVESGTHVDLISKGGEYAALVNLQSS 444
+ + H L V+ + V+ GQ+VE L+S ++ A NLQS+
Sbjct: 203 AYLFITHDLRLVQSFCQRVAVMDKGQIVEECDVAQLLSF--KHPAGRNLQSA 252
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase [Transport and binding proteins, Cations and iron carrying compounds]. Length = 265 |
| >gnl|CDD|226647 COG4181, COG4181, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 94.8 bits (236), Expect = 9e-22
Identities = 68/212 (32%), Positives = 104/212 (49%), Gaps = 18/212 (8%)
Query: 850 ITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLN---L 906
++I + + L V G ++A+VG SGSGKST+++++ DP SG V + G + L+
Sbjct: 23 LSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDAR 82
Query: 907 RSLRRK-IGLVQQEPALFST-TIYENIKYGNE---DASEIELMKATKAANAHGFISRMPE 961
+LR + +G V Q L T EN+ E ++S A A G R+
Sbjct: 83 AALRARHVGFVFQSFHLIPNLTALENVALPLELRGESSADSRAGAKALLEAVGLGKRL-- 140
Query: 962 GYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLME 1021
+H QLSGG++QRVA+ARA P +L DE T LD A+ + I + L L
Sbjct: 141 ---THYPA---QLSGGEQQRVALARAFAGRPDVLFADEPTGNLDRATGDKIADLLFALNR 194
Query: 1022 GR--TTIMVAHRLSTIRNADKIAVLQQGKVAE 1051
R T ++V H D+ L+ G++ E
Sbjct: 195 ERGTTLVLVTHDPQLAARCDRQLRLRSGRLVE 226
|
Length = 228 |
| >gnl|CDD|132302 TIGR03258, PhnT, 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Score = 97.8 bits (243), Expect = 1e-21
Identities = 66/235 (28%), Positives = 108/235 (45%), Gaps = 30/235 (12%)
Query: 204 GQIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEP--TS 261
G I + AY + V ++L+ ++AG+ A +G SG GK+T++ + + +
Sbjct: 4 GGIRIDHLRVAYGAN--TVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLT 61
Query: 262 GKILLDGHDLKSLQLKWLREQMGLVSQEPALFA-TSIANNILLGKEDASMDRVIEAAKAA 320
G+I + DL + + L+ Q ALF + +N+ G M + A + A
Sbjct: 62 GRIAIADRDLT--HAPPHKRGLALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAERVA 119
Query: 321 NAHSFVEGLPDGYQTQVGEGGT----QLSGGQKQRIAIARAVLRNPKILLLDEATSALDA 376
+A V +G+ QLSGG +QRIAIARA+ P +LLLDE SALDA
Sbjct: 120 DALKLV---------GLGDAAAHLPAQLSGGMQQRIAIARAIAIEPDVLLLDEPLSALDA 170
Query: 377 E------SELIVQRALEKIMSNRTTIVVAH-RLSTVRDVDTIMVLKNGQVVESGT 424
E+ AL + + T + V H + + D ++K+G++ G
Sbjct: 171 NIRANMREEI---AALHEELPELTILCVTHDQDDALTLADKAGIMKDGRLAAHGE 222
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. Length = 362 |
| >gnl|CDD|226628 COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 97.4 bits (243), Expect = 1e-21
Identities = 70/212 (33%), Positives = 110/212 (51%), Gaps = 31/212 (14%)
Query: 226 LNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDL----KSLQLKWLRE 281
NF++ A A GPSGSGK+++I+M+ L P G+I L+G L K + L +
Sbjct: 17 ANFTLPARGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEKR 76
Query: 282 QMGLVSQEPALFA-TSIANNILLGKEDAS---MDRVIEAAKAANAHSFVEGLPDGYQTQV 337
++G V Q+ LF ++ N+ G + D+++ +E L D Y
Sbjct: 77 RIGYVFQDARLFPHYTVRGNLRYGMWKSMRAQFDQLVALLG-------IEHLLDRYPGT- 128
Query: 338 GEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALD----AESELIVQRALEKIMSNR 393
LSGG+KQR+AI RA+L P++LL+DE ++LD E ++R ++I
Sbjct: 129 ------LSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKREILPYLERLRDEI---N 179
Query: 394 TTIV-VAHRLSTV-RDVDTIMVLKNGQVVESG 423
I+ V+H L V R D ++VL+NG+V SG
Sbjct: 180 IPILYVSHSLDEVLRLADRVVVLENGKVKASG 211
|
Length = 352 |
| >gnl|CDD|172762 PRK14274, PRK14274, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 95.4 bits (237), Expect = 1e-21
Identities = 65/226 (28%), Positives = 108/226 (47%), Gaps = 20/226 (8%)
Query: 220 HMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPT-----SGKILLDGHDL--K 272
H +N+N S+ + A +GPSG GKST I + + + +G++ +G ++
Sbjct: 25 HHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKG 84
Query: 273 SLQLKWLREQMGLVSQEPALFATSIANNILLG------KEDASMDRVIEAAKAANAHSFV 326
+ L LR+ +G+V Q+ F SI +N+ G K + ++E + A
Sbjct: 85 KVDLVELRKNIGMVFQKGNPFPQSIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVA---- 140
Query: 327 EGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRAL 386
L D + ++ LSGGQ+QR+ IARA+ NP +LL+DE TSALD S ++ +
Sbjct: 141 --LWDEVKDRLHTQALSLSGGQQQRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELI 198
Query: 387 EKIMSNRTTIVVAHRL-STVRDVDTIMVLKNGQVVESGTHVDLISK 431
K+ T ++V H + R D G++VE + S
Sbjct: 199 LKLKEKYTIVIVTHNMQQAARVSDQTAFFYMGELVECNDTNKMFSN 244
|
Length = 259 |
| >gnl|CDD|172740 PRK14252, PRK14252, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 95.8 bits (238), Expect = 1e-21
Identities = 70/243 (28%), Positives = 116/243 (47%), Gaps = 27/243 (11%)
Query: 836 ELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYD-----PI 890
E+ ++F Y +N+N+ V + A++G SG GKST + R +D
Sbjct: 18 EVNKLNFYYG---GYQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHY 74
Query: 891 SGTVLI--DGYDI--RTLNLRSLRRKIGLVQQEPALFSTTIYENIKYG-------NEDAS 939
G +++ D +I ++ +R +I +V Q+P F +I+EN+ YG
Sbjct: 75 EGEIILHPDNVNILSPEVDPIEVRMRISMVFQKPNPFPKSIFENVAYGLRIRGVKRRSIL 134
Query: 940 EIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDE 999
E + A + A + + +GD LSGGQ+QR+ IARA+ +P ILL DE
Sbjct: 135 EERVENALRNAALWDEV-------KDRLGDLAFNLSGGQQQRLCIARALATDPEILLFDE 187
Query: 1000 ATSALDTASENLIQEALDKLMEGRTTIMVAHRL-STIRNADKIAVLQQGKVAEIGSHEQL 1058
TSALD + I+E + L T ++V H + R +D A + G++ E G+ + +
Sbjct: 188 PTSALDPIATASIEELISDLKNKVTILIVTHNMQQAARVSDYTAYMYMGELIEFGATDTI 247
Query: 1059 LRK 1061
K
Sbjct: 248 FIK 250
|
Length = 265 |
| >gnl|CDD|172759 PRK14271, PRK14271, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 95.9 bits (238), Expect = 1e-21
Identities = 67/218 (30%), Positives = 112/218 (51%), Gaps = 11/218 (5%)
Query: 851 TIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISG-----TVLIDGYDIRTLN 905
T+ + +++ A +++G +GSGK+T + + R D +SG VL+ G I N
Sbjct: 35 TVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSI--FN 92
Query: 906 LRSL---RRKIGLVQQEPALFSTTIYENIKYGNEDASEIELMKATKAANAHGFISRMPEG 962
R + RR++G++ Q P F +I +N+ G + + A A + +
Sbjct: 93 YRDVLEFRRRVGMLFQRPNPFPMSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDA 152
Query: 963 YQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLMEG 1022
+ + D +LSGGQ+Q + +AR + NP +LLLDE TSALD + I+E + L +
Sbjct: 153 VKDRLSDSPFRLSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLADR 212
Query: 1023 RTTIMVAHRLS-TIRNADKIAVLQQGKVAEIGSHEQLL 1059
T I+V H L+ R +D+ A+ G++ E G EQL
Sbjct: 213 LTVIIVTHNLAQAARISDRAALFFDGRLVEEGPTEQLF 250
|
Length = 276 |
| >gnl|CDD|213232 cd03265, ABC_DrrA, Daunorubicin/doxorubicin resistance ATP-binding protein | Back alignment and domain information |
|---|
Score = 94.4 bits (235), Expect = 1e-21
Identities = 58/212 (27%), Positives = 110/212 (51%), Gaps = 26/212 (12%)
Query: 225 NLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMG 284
++F V G+ F +GP+G+GK+T I M+ L +PTSG+ + GHD+ + + +R ++G
Sbjct: 18 GVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVR-EPREVRRRIG 76
Query: 285 LVSQEPALFATSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQL 344
+V Q+ ++ ++ L G E+ + + A ++ L D + E +L
Sbjct: 77 IVFQDLSV------DDELTGWENLYIHARLYGVPGAERRERIDELLDFV--GLLEAADRL 128
Query: 345 ----SGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIM-SNRTTIVV- 398
SGG ++R+ IAR+++ P++L LDE T LD ++ V +EK+ TI++
Sbjct: 129 VKTYSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLT 188
Query: 399 ------AHRLSTVRDVDTIMVLKNGQVVESGT 424
A +L D + ++ +G+++ GT
Sbjct: 189 THYMEEAEQLC-----DRVAIIDHGRIIAEGT 215
|
DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|130252 TIGR01184, ntrCD, nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Score = 94.5 bits (235), Expect = 1e-21
Identities = 63/218 (28%), Positives = 99/218 (45%), Gaps = 40/218 (18%)
Query: 854 ENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRKI 913
+ +NL + G ++++G SG GKST+++L+ P SG V+++G I +
Sbjct: 2 KGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGPDRM---- 57
Query: 914 GLVQQEPALFS-TTIYENIKYGNEDASEIELMKATKAANAHGFISRMPEGYQSHVGD--- 969
+V Q +L T+ ENI A + + + + +
Sbjct: 58 -VVFQNYSLLPWLTVRENIAL------------AVDRVLPD-----LSKSERRAIVEEHI 99
Query: 970 -----------RGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDK 1018
R QLSGG KQRVAIARA+ P +LLLDE ALD + +QE L +
Sbjct: 100 ALVGLTEAADKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQ 159
Query: 1019 LME--GRTTIMVAHRL-STIRNADKIAVLQQGKVAEIG 1053
+ E T +MV H + + +D++ +L G A IG
Sbjct: 160 IWEEHRVTVLMVTHDVDEALLLSDRVVMLTNGPAANIG 197
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase [Transport and binding proteins, Anions, Transport and binding proteins, Other]. Length = 230 |
| >gnl|CDD|213265 cd03298, ABC_ThiQ_thiamine_transporter, ATP-binding cassette domain of the thiamine transport system | Back alignment and domain information |
|---|
Score = 93.7 bits (233), Expect = 2e-21
Identities = 64/230 (27%), Positives = 116/230 (50%), Gaps = 31/230 (13%)
Query: 206 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKIL 265
+ ++ F+Y +P M F+ + G+ A VGPSGSGKST+++++ P SG++L
Sbjct: 1 VRLDKIRFSYGEQP-MHFD---LTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVL 56
Query: 266 LDGHDLKSLQLKWLREQMGLVSQEPALFA-TSIANNILLGKEDA----SMDRVIEAAKAA 320
++G D+ + + ++ QE LFA ++ N+ LG + DR +A + A
Sbjct: 57 INGVDVTAAPPA--DRPVSMLFQENNLFAHLTVEQNVGLGLSPGLKLTAEDR--QAIEVA 112
Query: 321 NAHSFVEG----LPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDA 376
A + G LP +LSGG++QR+A+AR ++R+ +LLLDE +ALD
Sbjct: 113 LARVGLAGLEKRLPG-----------ELSGGERQRVALARVLVRDKPVLLLDEPFAALDP 161
Query: 377 ESELIVQRALEKIMSNR--TTIVVAHRLSTVRDVDT-IMVLKNGQVVESG 423
+ + + + T ++V H+ + + ++ L NG++ G
Sbjct: 162 ALRAEMLDLVLDLHAETKMTVLMVTHQPEDAKRLAQRVVFLDNGRIAAQG 211
|
Part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|172756 PRK14268, PRK14268, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 94.3 bits (234), Expect = 2e-21
Identities = 70/235 (29%), Positives = 111/235 (47%), Gaps = 36/235 (15%)
Query: 217 SRPHMVFENLNF-------------SVDAGKTFAFVGPSGSGKSTIISMVQRLYE----- 258
++P + ENLN + A +GPSG GKST I + R+ +
Sbjct: 9 AQPQIKVENLNLWYGEKQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNC 68
Query: 259 PTSGKILLDGHDL--KSLQLKWLREQMGLVSQEPALFATSIANNILLG-------KEDAS 309
GK+ ++G D+ + + LR+ +G+V Q+P F SI +N+ G K+D
Sbjct: 69 RIEGKVSIEGEDIYEPDVDVVELRKNVGMVFQKPNPFPMSIYDNVAYGPRIHGANKKD-- 126
Query: 310 MDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDE 369
+D V+E A + A L D ++ LSGGQ+QR+ IAR + PKI+L DE
Sbjct: 127 LDGVVENALRSAA------LWDETSDRLKSPALSLSGGQQQRLCIARTLAVKPKIILFDE 180
Query: 370 ATSALDAESELIVQRALEKIMSNRTTIVVAHRL-STVRDVDTIMVLKNGQVVESG 423
TSALD S ++ + + + T ++V H + R D G+++E G
Sbjct: 181 PTSALDPISTARIEDLIMNLKKDYTIVIVTHNMQQAARISDYTGFFLMGELIEFG 235
|
Length = 258 |
| >gnl|CDD|132027 TIGR02982, heterocyst_DevA, ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Score = 93.9 bits (234), Expect = 2e-21
Identities = 64/211 (30%), Positives = 108/211 (51%), Gaps = 22/211 (10%)
Query: 222 VFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSL---QLKW 278
V ++N ++ G+ GPSGSGK+T+++++ L G + + G +L +L
Sbjct: 20 VLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQ 79
Query: 279 LREQMGLVSQEPALFATSIA-NNILLGKE-DASMDRVIEAAKAANAHSFVEGLPDGYQTQ 336
LR +G + Q L A N+ + E ++ +A V GL D
Sbjct: 80 LRRNIGYIFQAHNLLGFLTARQNVQMALELQPNLSYQEARERARAMLEAV-GLGD----H 134
Query: 337 VGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAES-----ELIVQRALEKIMS 391
+ LSGGQKQR+AIARA++ PK++L DE T+ALD++S EL+ + A E+
Sbjct: 135 LDYYPHNLSGGQKQRVAIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQ--- 191
Query: 392 NRTTIVVAH--RLSTVRDVDTIMVLKNGQVV 420
T ++V H R+ V D I+ +++G+++
Sbjct: 192 GCTILIVTHDNRILDV--ADRIVHMEDGKLL 220
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. Length = 220 |
| >gnl|CDD|183044 PRK11231, fecE, iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 94.7 bits (236), Expect = 2e-21
Identities = 61/230 (26%), Positives = 109/230 (47%), Gaps = 36/230 (15%)
Query: 222 VFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLRE 281
+ +L+ S+ GK A +GP+G GKST++ RL P SG + L + L + L
Sbjct: 17 ILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLAR 76
Query: 282 QMGLVSQEPALFATSIANNILLGKEDASMDRVIEAAK----------AANAHSFVEGLPD 331
++ L+ Q L E ++ ++ + +A ++ V +
Sbjct: 77 RLALLPQ------------HHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAME 124
Query: 332 GYQTQVGEGG----TQLSGGQKQRIAIARAVLRNPKILLLDEATSALDA--ESELIVQRA 385
QT++ T LSGGQ+QR +A + ++ ++LLDE T+ LD + EL+
Sbjct: 125 --QTRINHLADRRLTDLSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLDINHQVELM---R 179
Query: 386 LEKIMSN--RTTIVVAHRLSTV-RDVDTIMVLKNGQVVESGTHVDLISKG 432
L + ++ +T + V H L+ R D ++VL NG V+ GT ++++ G
Sbjct: 180 LMRELNTQGKTVVTVLHDLNQASRYCDHLVVLANGHVMAQGTPEEVMTPG 229
|
Length = 255 |
| >gnl|CDD|184593 PRK14258, PRK14258, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 95.1 bits (236), Expect = 2e-21
Identities = 69/248 (27%), Positives = 123/248 (49%), Gaps = 31/248 (12%)
Query: 199 LPKLAGQIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYE 258
+ KL I+ + + F Y ++ + E ++ + K A +GPSG GKST + + R+ E
Sbjct: 1 MSKLIPAIKVNNLSFYYDTQK--ILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNE 58
Query: 259 PTS-----GKILLDGHDL--KSLQLKWLREQMGLVSQEPALFATSIANNILLG------K 305
S G++ ++ + + L LR Q+ +V +P LF S+ +N+ G +
Sbjct: 59 LESEVRVEGRVEFFNQNIYERRVNLNRLRRQVSMVHPKPNLFPMSVYDNVAYGVKIVGWR 118
Query: 306 EDASMDRVIEAA-KAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKI 364
+D ++E+A K A+ L D + ++ + LSGGQ+QR+ IARA+ PK+
Sbjct: 119 PKLEIDDIVESALKDAD-------LWDEIKHKIHKSALDLSGGQQQRLCIARALAVKPKV 171
Query: 365 LLLDEATSALDAESELIVQRALE--KIMSNRTTIVVAHRLSTVRDVDTIMVL------KN 416
LL+DE LD + + V+ ++ ++ S T ++V+H L V + +
Sbjct: 172 LLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLHQVSRLSDFTAFFKGNENRI 231
Query: 417 GQVVESGT 424
GQ+VE G
Sbjct: 232 GQLVEFGL 239
|
Length = 261 |
| >gnl|CDD|182561 PRK10575, PRK10575, iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 94.9 bits (236), Expect = 2e-21
Identities = 72/242 (29%), Positives = 119/242 (49%), Gaps = 32/242 (13%)
Query: 837 LRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLI 896
LRNVSF+ P R T+ L+L AG+ ++G +GSGKST++ ++ R P G +L+
Sbjct: 14 LRNVSFRVPGR---TLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILL 70
Query: 897 DGYDIRTLNLRSLRRKIG-LVQQEPALFSTTIYENI------------KYGNEDASEIEL 943
D + + + ++ RK+ L QQ PA T+ E + ++G D ++E
Sbjct: 71 DAQPLESWSSKAFARKVAYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVE- 129
Query: 944 MKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSA 1003
+A R+ + LSGG++QR IA + ++ LLLDE TSA
Sbjct: 130 -EAISLVGLKPLAHRLVD-----------SLSGGERQRAWIAMLVAQDSRCLLLDEPTSA 177
Query: 1004 LDTASENLIQEALDKLMEGR--TTIMVAHRLS-TIRNADKIAVLQQGKVAEIGSHEQLLR 1060
LD A + + + +L + R T I V H ++ R D + L+ G++ G+ +L+R
Sbjct: 178 LDIAHQVDVLALVHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGEMIAQGTPAELMR 237
Query: 1061 KE 1062
E
Sbjct: 238 GE 239
|
Length = 265 |
| >gnl|CDD|184202 PRK13642, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 94.8 bits (235), Expect = 3e-21
Identities = 66/236 (27%), Positives = 114/236 (48%), Gaps = 22/236 (9%)
Query: 206 IEFSEVCFAYPSRPHM-VFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKI 264
+E + F Y + ++FS+ G+ + +G +GSGKST ++ L+E GK+
Sbjct: 5 LEVENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKV 64
Query: 265 LLDGHDLKSLQLKWLREQMGLVSQEP--ALFATSIANNILLGKEDASM------DRVIEA 316
+DG L + + LR ++G+V Q P ++ +++ G E+ + RV EA
Sbjct: 65 KIDGELLTAENVWNLRRKIGMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKRVDEA 124
Query: 317 AKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDA 376
A N F P +LSGGQKQR+A+A + P+I++LDE+TS LD
Sbjct: 125 LLAVNMLDFKTREP-----------ARLSGGQKQRVAVAGIIALRPEIIILDESTSMLDP 173
Query: 377 ESELIVQRALEKIMS--NRTTIVVAHRLSTVRDVDTIMVLKNGQVVESGTHVDLIS 430
+ R + +I T + + H L D I+V+K G++++ +L +
Sbjct: 174 TGRQEIMRVIHEIKEKYQLTVLSITHDLDEAASSDRILVMKAGEIIKEAAPSELFA 229
|
Length = 277 |
| >gnl|CDD|226905 COG4525, TauB, ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 94.1 bits (234), Expect = 3e-21
Identities = 57/222 (25%), Positives = 107/222 (48%), Gaps = 19/222 (8%)
Query: 205 QIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKI 264
+ S + +Y +P E+++ ++ +G+ +GPSG GK+T+++++ P+ G I
Sbjct: 3 MLNVSHLSLSYEGKPRSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSI 62
Query: 265 LLDGHDLKSLQLKWLREQMGLVSQEPALFA-TSIANNILLGKEDASMDRVIEAAKAANAH 323
L+G ++ + G+V Q AL ++ +N+ G + +++ A
Sbjct: 63 QLNGRRIEGPG-----AERGVVFQNEALLPWLNVIDNVAFGLQLRGIEKAQRREIAHQML 117
Query: 324 SFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQ 383
+ V GL + QLSGG +QR+ IARA+ P++LLLDE ALDA + +Q
Sbjct: 118 ALV-GLEGAEHKYI----WQLSGGMRQRVGIARALAVEPQLLLLDEPFGALDALTREQMQ 172
Query: 384 RALEKI--MSNRTTIVVAHRLSTVRDVDTIMVLKNGQVVESG 423
L + + + +++ H D++ + L VV S
Sbjct: 173 ELLLDLWQETGKQVLLITH------DIEEALFLATRLVVLSP 208
|
Length = 259 |
| >gnl|CDD|213236 cd03269, ABC_putative_ATPase, ATP-binding cassette domain of an uncharacterized transporter | Back alignment and domain information |
|---|
Score = 92.7 bits (231), Expect = 3e-21
Identities = 53/218 (24%), Positives = 107/218 (49%), Gaps = 15/218 (6%)
Query: 835 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTV 894
+E+ NV+ ++ +T ++++ V G ++G +G+GK+T I +++ P SG V
Sbjct: 1 LEVENVTKRFG---RVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEV 57
Query: 895 LIDGYDIRTLNLRSLRRKIGLVQQEPALF-STTIYENIKYGNEDASEIELMKATKAANAH 953
L DG + R +IG + +E L+ + + + Y A L K
Sbjct: 58 LFDGKPLDIAA----RNRIGYLPEERGLYPKMKVIDQLVYL---AQLKGLKKEEARRRID 110
Query: 954 GFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQ 1013
++ R+ + R +LS G +Q+V A++ +P +L+LDE S LD + L++
Sbjct: 111 EWLERL--ELSEYANKRVEELSKGNQQKVQFIAAVIHDPELLILDEPFSGLDPVNVELLK 168
Query: 1014 EALDKLME-GRTTIMVAHRLSTI-RNADKIAVLQQGKV 1049
+ + +L G+T I+ H++ + D++ +L +G+
Sbjct: 169 DVIRELARAGKTVILSTHQMELVEELCDRVLLLNKGRA 206
|
This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 210 |
| >gnl|CDD|172748 PRK14260, PRK14260, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 94.3 bits (234), Expect = 3e-21
Identities = 71/249 (28%), Positives = 113/249 (45%), Gaps = 27/249 (10%)
Query: 201 KLAGQIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYE-- 258
+L I+ ++ F Y + E ++ + K A +GPSG GKST I + R+ E
Sbjct: 3 QLIPAIKVKDLSFYYNTSK--AIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELE 60
Query: 259 ---PTSGKILLDGHDL--KSLQLKWLREQMGLVSQEPALFATSIANNILLG------KED 307
G + G ++ + + LR Q+G+V Q P F SI N+ G
Sbjct: 61 GPVKVEGVVDFFGQNIYDPRININRLRRQIGMVFQRPNPFPMSIYENVAYGVRISAKLPQ 120
Query: 308 ASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLL 367
A +D ++E+A A L + ++ + LSGGQ+QR+ IARA+ PK+LL+
Sbjct: 121 ADLDEIVESALKGAA------LWQEVKDKLNKSALGLSGGQQQRLCIARALAIKPKVLLM 174
Query: 368 DEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRDVDTIMVL------KNGQVVE 421
DE SALD + + V+ + + S T +V H + V + GQ+VE
Sbjct: 175 DEPCSALDPIATMKVEELIHSLRSELTIAIVTHNMQQATRVSDFTAFFSTDESRIGQMVE 234
Query: 422 SGTHVDLIS 430
G + S
Sbjct: 235 FGVTTQIFS 243
|
Length = 259 |
| >gnl|CDD|182980 PRK11124, artP, arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 93.5 bits (233), Expect = 3e-21
Identities = 72/239 (30%), Positives = 114/239 (47%), Gaps = 32/239 (13%)
Query: 835 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTV 894
I+L ++ Y ++ L G +L ++G SG+GKS+++ ++ P SGT+
Sbjct: 3 IQLNGINCFYGAH---QALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTL 59
Query: 895 LIDG--YDIRTLN----LRSLRRKIGLVQQEPALFS-TTIYENIKYGNEDASEIE----- 942
I G +D +R LRR +G+V Q+ L+ T+ +N+ IE
Sbjct: 60 NIAGNHFDFSKTPSDKAIRELRRNVGMVFQQYNLWPHLTVQQNL---------IEAPCRV 110
Query: 943 --LMKATKAANAHGFISRMPEGYQSHVGDR-GVQLSGGQKQRVAIARAILKNPSILLLDE 999
L K A A + R+ DR + LSGGQ+QRVAIARA++ P +LL DE
Sbjct: 111 LGLSKDQALARAEKLLERL---RLKPYADRFPLHLSGGQQQRVAIARALMMEPQVLLFDE 167
Query: 1000 ATSALDTASENLIQEALDKLME-GRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGSHE 1056
T+ALD I + +L E G T ++V H + R A ++ ++ G + E G
Sbjct: 168 PTAALDPEITAQIVSIIRELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDAS 226
|
Length = 242 |
| >gnl|CDD|226963 COG4604, CeuD, ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 94.3 bits (235), Expect = 3e-21
Identities = 65/228 (28%), Positives = 119/228 (52%), Gaps = 33/228 (14%)
Query: 220 HMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWL 279
+V ++++ + G + +GP+G+GKST++SM+ RL + SG+I +DG +L S K L
Sbjct: 14 KVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITIDGLELTSTPSKEL 73
Query: 280 REQMGLVSQEPALFATSIANNIL-----------LGKEDAS-MDRVIEAAKAANAHSFVE 327
+++ ++ QE + + +++ L KED ++ IE +E
Sbjct: 74 AKKLSILKQENHINSRLTVRDLVGFGRFPYSQGRLTKEDRRIINEAIEYLH-------LE 126
Query: 328 GLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESEL----IVQ 383
L D Y +LSGGQ+QR IA + ++ +LLDE + LD + + I++
Sbjct: 127 DLSDRYL-------DELSGGQRQRAFIAMVLAQDTDYVLLDEPLNNLDMKHSVQIMKILR 179
Query: 384 RALEKIMSNRTTIVVAHRLS-TVRDVDTIMVLKNGQVVESGTHVDLIS 430
R +++ +T +VV H ++ D I+ LKNG+VV+ G+ ++I
Sbjct: 180 RLADEL--GKTIVVVLHDINFASCYSDHIVALKNGKVVKQGSPDEIIQ 225
|
Length = 252 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 98.9 bits (247), Expect = 3e-21
Identities = 64/225 (28%), Positives = 104/225 (46%), Gaps = 49/225 (21%)
Query: 835 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTV 894
I L N+S Y RP + EN++L ++ G + +VG++G+GKST++ ++ +P SG V
Sbjct: 4 ITLENLSLAYGDRP---LLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEV 60
Query: 895 LIDGYDIRTLNLRSLRRKIGLVQQEPALFST-TIYENIKYGNEDASEIEL-MKATKAANA 952
LR +G + QEP L T+ + + G + E+ ++ A A
Sbjct: 61 TRPK------GLR-----VGYLSQEPPLDPEKTVLDYVIEGFGELRELLAELEEAYALLA 109
Query: 953 HGFISRMPE---------GYQ---------SHVGDRGVQ-----LSGGQKQRVAIARAIL 989
+ E G+ +G LSGG ++RVA+ARA+L
Sbjct: 110 DPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDEDRPVSSLSGGWRRRVALARALL 169
Query: 990 KNPSILLLDEATSALDTAS----ENLIQEALDKLMEGRTTIMVAH 1030
+ P +LLLDE T+ LD S E+ ++ G T I+V+H
Sbjct: 170 EEPDLLLLDEPTNHLDLESIEWLEDYLKR-----YPG-TVIVVSH 208
|
Length = 530 |
| >gnl|CDD|183226 PRK11607, potG, putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 96.4 bits (240), Expect = 4e-21
Identities = 64/191 (33%), Positives = 101/191 (52%), Gaps = 26/191 (13%)
Query: 221 MVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLR 280
++++ ++ G+ FA +G SG GKST++ M+ +PT+G+I+LDG DL S + R
Sbjct: 33 HAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDL-SHVPPYQR 91
Query: 281 EQMGLVSQEPALFA-TSIANNILLG-KED-----ASMDRVIEAAKAANAHSFVEGLPDGY 333
+ ++ Q ALF ++ NI G K+D RV E + F + P
Sbjct: 92 P-INMMFQSYALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFAKRKPH-- 148
Query: 334 QTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAE----SELIVQRALEKI 389
QLSGGQ+QR+A+AR++ + PK+LLLDE ALD + +L V LE++
Sbjct: 149 ---------QLSGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERV 199
Query: 390 MSNRTTIVVAH 400
T ++V H
Sbjct: 200 --GVTCVMVTH 208
|
Length = 377 |
| >gnl|CDD|131817 TIGR02770, nickel_nikD, nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Score = 93.2 bits (232), Expect = 4e-21
Identities = 72/223 (32%), Positives = 111/223 (49%), Gaps = 30/223 (13%)
Query: 225 NLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEP----TSGKILLDGHDLKSLQLKWLR 280
+LN S+ G+ A VG SGSGKS + L P TSG+ILLDG L L ++
Sbjct: 4 DLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIRGR- 62
Query: 281 EQMGLVSQEP-----ALFATSIANNIL-----LGK-EDASMDRVIEAAKAANAHSFVEGL 329
+ + Q P LF ++ N+ + LGK + ++EA +A GL
Sbjct: 63 -HIATIMQNPRTAFNPLF--TMGNHAIETLRSLGKLSKQARALILEALEAV-------GL 112
Query: 330 PDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKI 389
PD + + + QLSGG QR+ IA A+L P L+ DE T+ LD ++ V + L ++
Sbjct: 113 PDPEEV-LKKYPFQLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQARVLKLLREL 171
Query: 390 MSNRTT--IVVAHRLSTV-RDVDTIMVLKNGQVVESGTHVDLI 429
T +++ H L V R D + V+ +G++VE GT ++
Sbjct: 172 RQLFGTGILLITHDLGVVARIADEVAVMDDGRIVERGTVKEIF 214
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous [Transport and binding proteins, Cations and iron carrying compounds]. Length = 230 |
| >gnl|CDD|163585 TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 93.7 bits (233), Expect = 4e-21
Identities = 63/217 (29%), Positives = 107/217 (49%), Gaps = 8/217 (3%)
Query: 851 TIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLR 910
I + +++ G ++G +GSGKST++ L+ P +GTV + G D+ L+ R+
Sbjct: 15 LIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARA 74
Query: 911 RKIGLVQQE-PALFSTTIYENIKYGN-EDASEIELMKATKAANAHGFISRMPEGYQSHVG 968
R++ LV+Q+ T+ + + G S AA ++R SH+
Sbjct: 75 RRVALVEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTE---LSHLA 131
Query: 969 DRGVQ-LSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLMEGRTTIM 1027
DR + LSGG++QRV +ARA+ + P +LLLDE T+ LD ++ + +L T++
Sbjct: 132 DRDMSTLSGGERQRVHVARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAATGVTVV 191
Query: 1028 VA-HRLS-TIRNADKIAVLQQGKVAEIGSHEQLLRKE 1062
A H L+ D + VL G+V G ++L
Sbjct: 192 AALHDLNLAASYCDHVVVLDGGRVVAAGPPREVLTPA 228
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. Length = 256 |
| >gnl|CDD|213232 cd03265, ABC_DrrA, Daunorubicin/doxorubicin resistance ATP-binding protein | Back alignment and domain information |
|---|
Score = 92.8 bits (231), Expect = 4e-21
Identities = 62/236 (26%), Positives = 112/236 (47%), Gaps = 29/236 (12%)
Query: 835 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTV 894
IE+ N+ KY D ++ +V G ++G +G+GK+T I ++ P SG
Sbjct: 1 IEVENLVKKYG---DFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRA 57
Query: 895 LIDGYDIRTLNLRSLRRKIGLVQQEPAL-FSTTIYENIK-------YGNEDASEIELMKA 946
+ G+D+ R +RR+IG+V Q+ ++ T +EN+ + E
Sbjct: 58 TVAGHDVVR-EPREVRRRIGIVFQDLSVDDELTGWENLYIHARLYGVPGAERRE------ 110
Query: 947 TKAANAHGFISRMPEGYQSHVGDRGVQ-LSGGQKQRVAIARAILKNPSILLLDEATSALD 1005
+ F+ + DR V+ SGG ++R+ IAR+++ P +L LDE T LD
Sbjct: 111 -RIDELLDFVGLL------EAADRLVKTYSGGMRRRLEIARSLVHRPEVLFLDEPTIGLD 163
Query: 1006 TASENLIQEALDKLME--GRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGSHEQL 1058
+ + E ++KL E G T ++ H + D++A++ G++ G+ E+L
Sbjct: 164 PQTRAHVWEYIEKLKEEFGMTILLTTHYMEEAEQLCDRVAIIDHGRIIAEGTPEEL 219
|
DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|237422 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 93.7 bits (234), Expect = 4e-21
Identities = 70/249 (28%), Positives = 116/249 (46%), Gaps = 38/249 (15%)
Query: 835 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTV 894
+E RN+S + R T+ ++++L + G +A++G +G+GKST++ + P SG V
Sbjct: 3 LEARNLSVRLGGR---TLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEV 59
Query: 895 LIDGYDIRTLNLRSLRRKIGLVQQEPAL-FSTTIYENIKYG------NEDASEIELMKAT 947
++G + + L R+ ++ Q +L F T+ E + G + + + A
Sbjct: 60 RLNGRPLADWSPAELARRRAVLPQHSSLSFPFTVEEVVAMGRAPHGLSRAEDDALVAAAL 119
Query: 948 KAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAIL------KNPSILLLDEAT 1001
+ R Y QLSGG++QRV +AR + P LLLDE T
Sbjct: 120 AQVDLAHLAGRD---YP--------QLSGGEQQRVQLARVLAQLWEPDGPPRWLLLDEPT 168
Query: 1002 SALDTASENLIQEALDKLM------EGRTTIMVAHRLS-TIRNADKIAVLQQGKVAEIGS 1054
SALD A Q + +L G I+V H L+ R AD+I +L QG++ G+
Sbjct: 169 SALDLAH----QHHVLRLARQLAHERGLAVIVVLHDLNLAARYADRIVLLHQGRLVADGT 224
Query: 1055 HEQLLRKEN 1063
++L E
Sbjct: 225 PAEVLTPET 233
|
Length = 258 |
| >gnl|CDD|226647 COG4181, COG4181, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 92.8 bits (231), Expect = 5e-21
Identities = 65/216 (30%), Positives = 103/216 (47%), Gaps = 30/216 (13%)
Query: 222 VFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSL---QLKW 278
+ + + V G+T A VGPSGSGKST+++++ L +P+SG++ L G L L
Sbjct: 25 ILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARAA 84
Query: 279 LR-EQMGLVSQEPALFATSIA-NNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQ 336
LR +G V Q L A N+ L E + +A++ + + L +
Sbjct: 85 LRARHVGFVFQSFHLIPNLTALENVALPLE-------LRGESSADSRAGAKALLE----A 133
Query: 337 VGEGG------TQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAE-----SELIVQRA 385
VG G QLSGG++QR+A+ARA P +L DE T LD ++L+
Sbjct: 134 VGLGKRLTHYPAQLSGGEQQRVALARAFAGRPDVLFADEPTGNLDRATGDKIADLLFALN 193
Query: 386 LEKIMSNRTTIVVAHRLSTVRDVDTIMVLKNGQVVE 421
E+ T ++V H D + L++G++VE
Sbjct: 194 RERGT---TLVLVTHDPQLAARCDRQLRLRSGRLVE 226
|
Length = 228 |
| >gnl|CDD|184593 PRK14258, PRK14258, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 93.6 bits (232), Expect = 5e-21
Identities = 67/237 (28%), Positives = 116/237 (48%), Gaps = 30/237 (12%)
Query: 835 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYD-----P 889
I++ N+SF Y + I E +++++ + A++G SG GKST + + R +
Sbjct: 8 IKVNNLSFYYDTQ---KILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVR 64
Query: 890 ISGTVLIDGYDI--RTLNLRSLRRKIGLVQQEPALFSTTIYENIKYGNEDAS---EIEL- 943
+ G V +I R +NL LRR++ +V +P LF ++Y+N+ YG + ++E+
Sbjct: 65 VEGRVEFFNQNIYERRVNLNRLRRQVSMVHPKPNLFPMSVYDNVAYGVKIVGWRPKLEID 124
Query: 944 ---MKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEA 1000
A K A+ + + + + + LSGGQ+QR+ IARA+ P +LL+DE
Sbjct: 125 DIVESALKDAD-------LWDEIKHKIHKSALDLSGGQQQRLCIARALAVKPKVLLMDEP 177
Query: 1001 TSALDTAS----ENLIQEALDKLMEGRTTIMVAHRLSTIRNADKIAVLQQGKVAEIG 1053
LD + E+LIQ +L T ++V+H L + +G IG
Sbjct: 178 CFGLDPIASMKVESLIQSL--RLRSELTMVIVSHNLHQVSRLSDFTAFFKGNENRIG 232
|
Length = 261 |
| >gnl|CDD|172751 PRK14263, PRK14263, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 93.5 bits (232), Expect = 5e-21
Identities = 70/244 (28%), Positives = 113/244 (46%), Gaps = 32/244 (13%)
Query: 221 MVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPT-----SGKILLDGHDL--KS 273
M + + + + F+GPSG GKST++ + R+ + G + G D+ K
Sbjct: 22 MAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKG 81
Query: 274 LQLKWLREQMGLVSQEPALFATSIANNILLG------KEDASMDRVIEAAKAANAHSFVE 327
+ +R +G+V Q+P F+ SI +N+ G K D DRV A + A
Sbjct: 82 VDPVVVRRYIGMVFQQPNPFSMSIFDNVAFGLRLNRYKGDLG-DRVKHALQGA------- 133
Query: 328 GLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALE 387
L D + ++ G LSGGQ+QR+ IARA+ P++LLLDE SALD + V+ +
Sbjct: 134 ALWDEVKDKLKVSGLSLSGGQQQRLCIARAIATEPEVLLLDEPCSALDPIATRRVEELMV 193
Query: 388 KIMSNRTTIVVAHRLSTVRDVDTIMVLKNGQVVESGTHVDLISKGGEYAALVNL-QSSEH 446
++ + T +V H + V + VD IS+G LV + +++
Sbjct: 194 ELKKDYTIALVTHNMQQAIRVADTTAFFS---------VD-ISQGTRTGYLVEMGPTAQI 243
Query: 447 LSNP 450
NP
Sbjct: 244 FQNP 247
|
Length = 261 |
| >gnl|CDD|224057 COG1134, TagH, ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 93.1 bits (232), Expect = 5e-21
Identities = 58/216 (26%), Positives = 98/216 (45%), Gaps = 36/216 (16%)
Query: 220 HMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWL 279
++++F + G+ +G +G+GKST++ ++ +Y+PTSGK+ + G ++ L
Sbjct: 40 FWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKVKVTG------KVAPL 93
Query: 280 RE-----QMGLVSQEPALFATSIANNILLGKE-DASMDRVIEAAKAANAHSFVEGLPDGY 333
E L +E I L KE D +D +IE F E L D
Sbjct: 94 IELGAGFDPELTGRENIYLRGLILG--LTRKEIDEKVDEIIE---------FAE-LGDFI 141
Query: 334 QTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMS-- 391
V S G R+A + A P ILLLDE + DA ++ LE++
Sbjct: 142 DQPVK----TYSSGMYARLAFSVATHVEPDILLLDEVLAVGDAA---FQEKCLERLNELV 194
Query: 392 --NRTTIVVAHRLSTVRDV-DTIMVLKNGQVVESGT 424
N+T ++V+H L ++ D + L++GQ+ G+
Sbjct: 195 EKNKTIVLVSHDLGAIKQYCDRAIWLEHGQIRMEGS 230
|
Length = 249 |
| >gnl|CDD|182778 PRK10851, PRK10851, sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 95.2 bits (237), Expect = 7e-21
Identities = 70/215 (32%), Positives = 110/215 (51%), Gaps = 23/215 (10%)
Query: 222 VFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLRE 281
V +++ + +G+ A +GPSGSGK+T++ ++ L TSG I G D+ L +
Sbjct: 17 VLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHAR--DR 74
Query: 282 QMGLVSQEPALFA-TSIANNILLG------KEDASMDRVIEAAKAANAHSFV--EGLPDG 332
++G V Q ALF ++ +NI G +E + + AK V L D
Sbjct: 75 KVGFVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAI--KAKVTQLLEMVQLAHLADR 132
Query: 333 YQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSN 392
Y QLSGGQKQR+A+ARA+ P+ILLLDE ALDA+ ++R L ++
Sbjct: 133 YP-------AQLSGGQKQRVALARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEE 185
Query: 393 R--TTIVVAHRLSTVRDV-DTIMVLKNGQVVESGT 424
T++ V H +V D ++V+ G + ++GT
Sbjct: 186 LKFTSVFVTHDQEEAMEVADRVVVMSQGNIEQAGT 220
|
Length = 353 |
| >gnl|CDD|163452 TIGR03740, galliderm_ABC, gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 92.1 bits (229), Expect = 7e-21
Identities = 63/213 (29%), Positives = 103/213 (48%), Gaps = 38/213 (17%)
Query: 221 MVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLR 280
N++ +V + +GP+G+GKST++ M+ + PTSG+I+ DGH W R
Sbjct: 14 TAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHP-------WTR 66
Query: 281 ---EQMGLVSQEPALFATSIANN------ILLGKEDASMDRVIEAAKAANAHSFVEGLPD 331
++G + + P L+ A LLG D+ +D V+ + L +
Sbjct: 67 KDLHKIGSLIESPPLYENLTARENLKVHTTLLGLPDSRIDEVLN----------IVDLTN 116
Query: 332 GYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMS 391
+ + Q S G KQR+ IA A+L +PK+L+LDE T+ LD + +Q E I S
Sbjct: 117 TGKKKAK----QFSLGMKQRLGIAIALLNHPKLLILDEPTNGLDP---IGIQELRELIRS 169
Query: 392 ----NRTTIVVAHRLSTVRDV-DTIMVLKNGQV 419
T I+ +H LS V+ + D I ++ G +
Sbjct: 170 FPEQGITVILSSHILSEVQQLADHIGIISEGVL 202
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. Length = 223 |
| >gnl|CDD|213233 cd03266, ABC_NatA_sodium_exporter, ATP-binding cassette domain of the Na+ transporter | Back alignment and domain information |
|---|
Score = 92.0 bits (229), Expect = 8e-21
Identities = 59/220 (26%), Positives = 105/220 (47%), Gaps = 21/220 (9%)
Query: 213 FAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLK 272
F + + ++F+V G+ +GP+G+GK+T + M+ L EP +G +DG D+
Sbjct: 11 FRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVV 70
Query: 273 SLQLKWLREQMGLVSQEPALFA--TSIANNILLG-----KEDASMDRVIEAAKAANAHSF 325
+ R ++G VS L+ T+ N K D R+ E A
Sbjct: 71 KEPAE-ARRRLGFVSDSTGLYDRLTARENLEYFAGLYGLKGDELTARLEELADRLGMEEL 129
Query: 326 VEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRA 385
++ +VG S G +Q++AIARA++ +P +LLLDE T+ LD + ++
Sbjct: 130 LD-------RRVGG----FSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRALREF 178
Query: 386 LEKIMSNRTTIVVA-HRLSTVRDV-DTIMVLKNGQVVESG 423
+ ++ + I+ + H + V + D ++VL G+VV G
Sbjct: 179 IRQLRALGKCILFSTHIMQEVERLCDRVVVLHRGRVVYEG 218
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein. Length = 218 |
| >gnl|CDD|226929 COG4559, COG4559, ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 93.2 bits (232), Expect = 8e-21
Identities = 70/247 (28%), Positives = 110/247 (44%), Gaps = 35/247 (14%)
Query: 835 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTV 894
I N+S+ R + + ++L + G LA++G +G+GKST++ + P SG V
Sbjct: 2 IRAENLSYSLAGR---RLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEV 58
Query: 895 LIDGYDIRTLNLRSLRRKIG-LVQQEPALFSTTIYENIKYG----------NEDASEIEL 943
++G + + L R L Q F T+ E ++ G ED
Sbjct: 59 TLNGVPLNSWPPEELARHRAVLPQNSSLAFPFTVQEVVQMGRIPHRSGREPEEDERIAA- 117
Query: 944 MKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIAR------AILKNPSILLL 997
+A A + G R Y+ LSGG++QRV +AR + + L L
Sbjct: 118 -QALAATDLSGLAGRD---YR--------TLSGGEQQRVQLARVLAQLWPPVPSGRWLFL 165
Query: 998 DEATSALDTA-SENLIQEALDKLMEGRTTIMVAHRLS-TIRNADKIAVLQQGKVAEIGSH 1055
DE TSALD A + ++ A EG + V H L+ + AD+I +L QG+V GS
Sbjct: 166 DEPTSALDIAHQHHTLRLARQLAREGGAVLAVLHDLNLAAQYADRIVLLHQGRVIASGSP 225
Query: 1056 EQLLRKE 1062
+ +L E
Sbjct: 226 QDVLTDE 232
|
Length = 259 |
| >gnl|CDD|237650 PRK14265, PRK14265, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 92.8 bits (230), Expect = 1e-20
Identities = 64/210 (30%), Positives = 102/210 (48%), Gaps = 17/210 (8%)
Query: 225 NLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYE-----PTSGKILLDGHDLKSLQLKW- 278
+++ + A K AF+GPSG GKST++ R+ + G++L ++ Q+
Sbjct: 38 DVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQINSV 97
Query: 279 -LREQMGLVSQEPALFATSIANNILLGKE----DASMDRVIEAAKAANAHSFVEGLPDGY 333
LR Q+G+V Q P F SI NI ++D ++E + A + +
Sbjct: 98 KLRRQVGMVFQRPNPFPKSIYENIAFAPRANGYKGNLDELVEDSLRRAA------IWEEV 151
Query: 334 QTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNR 393
+ ++ E GT LSGGQ+QR+ IARA+ P +LL+DE SALD S V+ ++
Sbjct: 152 KDKLKEKGTALSGGQQQRLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKEQY 211
Query: 394 TTIVVAHRLSTVRDVDTIMVLKNGQVVESG 423
T I+V H + V N ++ E G
Sbjct: 212 TIIMVTHNMQQASRVADWTAFFNTEIDEYG 241
|
Length = 274 |
| >gnl|CDD|224044 COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 92.4 bits (230), Expect = 1e-20
Identities = 67/255 (26%), Positives = 119/255 (46%), Gaps = 18/255 (7%)
Query: 184 ENSHSSERPGDDGIT----LPKLAGQIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFV 239
E+S E P + IE V + + +L++ V+ G+ +A V
Sbjct: 6 ESSRGVELPEPKEPKKRHPIEINEPLIELKNVSVRRNGKK--ILGDLSWQVNPGEHWAIV 63
Query: 240 GPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKW-LREQMGLVS---QEPALFAT 295
GP+G+GK+T++S++ + P+SG + L G + + LR+++GLVS E
Sbjct: 64 GPNGAGKTTLLSLLTGEHPPSSGDVTLLGRRFGKGETIFELRKRIGLVSSELHERFRVRE 123
Query: 296 SIANNILLGKEDASM--DRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIA 353
++ + +L G + + A A A +E L + G LS G+++R+
Sbjct: 124 TVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAKHLADRPFG--SLSQGEQRRVL 181
Query: 354 IARAVLRNPKILLLDEATSALDAES-ELIVQRALEKIMSNRTT--IVVAHRLSTVRDVDT 410
IARA++++P++L+LDE LD + E ++ R E S + V H + T
Sbjct: 182 IARALVKDPELLILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHHAEEIPPCFT 241
Query: 411 -IMVLKNGQVVESGT 424
++LK G+VV G
Sbjct: 242 HRLLLKEGEVVAQGK 256
|
Length = 257 |
| >gnl|CDD|131816 TIGR02769, nickel_nikE, nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Score = 92.9 bits (231), Expect = 1e-20
Identities = 65/232 (28%), Positives = 112/232 (48%), Gaps = 18/232 (7%)
Query: 835 IELRNVSFKYPV------RPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYD 888
+E+R+V+ Y + + N++L + G ++ ++G+SG GKST+ L++
Sbjct: 3 LEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEK 62
Query: 889 PISGTVLIDGYDIRTLN---LRSLRRKIGLV-QQEPALFS--TTIYENIKYGNEDASEIE 942
P GTV G D+ L+ R+ RR + LV Q P+ + T+ + I E +
Sbjct: 63 PAQGTVSFRGQDLYQLDRKQRRAFRRDVQLVFQDSPSAVNPRMTVRQIIG---EPLRHLT 119
Query: 943 LMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATS 1002
+ ++ + M QLSGGQ QR+ IARA+ P +++LDEA S
Sbjct: 120 SLDESEQKARIAELLDMVGLRSEDADKLPRQLSGGQLQRINIARALAVKPKLIVLDEAVS 179
Query: 1003 ALDTASENLIQEALDKLME--GRTTIMVAHRLSTI-RNADKIAVLQQGKVAE 1051
LD + +I E L KL + G + + H L + ++AV+ +G++ E
Sbjct: 180 NLDMVLQAVILELLRKLQQAFGTAYLFITHDLRLVQSFCQRVAVMDKGQIVE 231
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase [Transport and binding proteins, Cations and iron carrying compounds]. Length = 265 |
| >gnl|CDD|172759 PRK14271, PRK14271, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 92.9 bits (230), Expect = 1e-20
Identities = 64/216 (29%), Positives = 109/216 (50%), Gaps = 7/216 (3%)
Query: 222 VFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSG-----KILLDGHDLKSLQ- 275
V + ++ A + +GP+GSGK+T + + R+ + SG +LL G + + +
Sbjct: 36 VLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRD 95
Query: 276 LKWLREQMGLVSQEPALFATSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQT 335
+ R ++G++ Q P F SI +N+L G + E A A GL D +
Sbjct: 96 VLEFRRRVGMLFQRPNPFPMSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDAVKD 155
Query: 336 QVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNRTT 395
++ + +LSGGQ+Q + +AR + NP++LLLDE TSALD + ++ + + T
Sbjct: 156 RLSDSPFRLSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLADRLTV 215
Query: 396 IVVAHRLS-TVRDVDTIMVLKNGQVVESGTHVDLIS 430
I+V H L+ R D + +G++VE G L S
Sbjct: 216 IIVTHNLAQAARISDRAALFFDGRLVEEGPTEQLFS 251
|
Length = 276 |
| >gnl|CDD|213185 cd03218, ABC_YhbG, ATP-binding cassette component of YhbG transport system | Back alignment and domain information |
|---|
Score = 91.8 bits (229), Expect = 1e-20
Identities = 65/233 (27%), Positives = 118/233 (50%), Gaps = 14/233 (6%)
Query: 835 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTV 894
+ N+S +Y R + ++L V G + ++G +G+GK+T +++ P SG +
Sbjct: 1 LRAENLSKRYGKR---KVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKI 57
Query: 895 LIDGYDIRTLNL-RSLRRKIGLVQQEPALF-STTIYENIKYGNEDASEIELMKATKAANA 952
L+DG DI L + + R IG + QE ++F T+ ENI + +E+ +K
Sbjct: 58 LLDGQDITKLPMHKRARLGIGYLPQEASIFRKLTVEENIL------AVLEIRGLSKKERE 111
Query: 953 HGFISRMPEGYQSHVGDR-GVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENL 1011
+ E + +H+ LSGG+++RV IARA+ NP LLLDE + +D +
Sbjct: 112 EKLEELLEEFHITHLRKSKASSLSGGERRRVEIARALATNPKFLLLDEPFAGVDPIAVQD 171
Query: 1012 IQEALDKLMEGRTTIMVA-HRLS-TIRNADKIAVLQQGKVAEIGSHEQLLRKE 1062
IQ+ + L + +++ H + T+ D+ ++ +GKV G+ E++ E
Sbjct: 172 IQKIIKILKDRGIGVLITDHNVRETLSITDRAYIIYEGKVLAEGTPEEIAANE 224
|
The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. Length = 232 |
| >gnl|CDD|226637 COG4167, SapF, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 92.6 bits (230), Expect = 1e-20
Identities = 63/220 (28%), Positives = 119/220 (54%), Gaps = 23/220 (10%)
Query: 224 ENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQM 283
+ ++F++ G+T A +G +GSGKST+ M+ + EPTSG+IL++ H L + +++
Sbjct: 30 KPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLHFGDYSFRSKRI 89
Query: 284 GLVSQEPALFATSIANNILLG-------KEDASMDRVIEAAKAANAHSFVEGLPD--GYQ 334
++ Q+P TS+ + +G + + ++ + V LPD Y
Sbjct: 90 RMIFQDP---NTSLNPRLRIGQILDFPLRLNTDLEPEQRRKQIFETLRMVGLLPDHANYY 146
Query: 335 TQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDA--ESELI-VQRALEKIMS 391
+ L+ GQKQR+A+ARA++ PKI++ DEA ++LD S+LI + L++
Sbjct: 147 PHM------LAPGQKQRVALARALILRPKIIIADEALASLDMSMRSQLINLMLELQEKQG 200
Query: 392 NRTTIVVAHRLSTVRDV-DTIMVLKNGQVVESGTHVDLIS 430
+ I V + ++ + D ++V+ G+VVE G+ D+++
Sbjct: 201 -ISYIYVTQHIGMIKHISDQVLVMHEGEVVERGSTADVLA 239
|
Length = 267 |
| >gnl|CDD|213257 cd03290, ABCC_SUR1_N, ATP-binding cassette domain of the sulfonylurea receptor, subfamily C | Back alignment and domain information |
|---|
Score = 90.9 bits (225), Expect = 2e-20
Identities = 59/200 (29%), Positives = 100/200 (50%), Gaps = 8/200 (4%)
Query: 225 NLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWL----R 280
N+N + G+ VG G GKS+++ + + GK+ + + R
Sbjct: 19 NINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSRNR 78
Query: 281 EQMGLVSQEPALFATSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEG 340
+ +Q+P L ++ NI G + R A + ++ LP G QT++GE
Sbjct: 79 YSVAYAAQKPWLLNATVEENITFGSP-FNKQRYKAVTDACSLQPDIDLLPFGDQTEIGER 137
Query: 341 GTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAE-SELIVQRALEKIMSN--RTTIV 397
G LSGGQ+QRI +ARA+ +N I+ LD+ SALD S+ ++Q + K + + RT ++
Sbjct: 138 GINLSGGQRQRICVARALYQNTNIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVL 197
Query: 398 VAHRLSTVRDVDTIMVLKNG 417
V H+L + D I+ +K+G
Sbjct: 198 VTHKLQYLPHADWIIAMKDG 217
|
The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 218 |
| >gnl|CDD|172761 PRK14273, PRK14273, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 92.0 bits (228), Expect = 2e-20
Identities = 62/220 (28%), Positives = 105/220 (47%), Gaps = 20/220 (9%)
Query: 223 FENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYE-----PTSGKILLDGHDLKS--LQ 275
N+N + A +GPSG GKST + + R+ + G ++ +G ++ S
Sbjct: 23 LNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFD 82
Query: 276 LKWLREQMGLVSQEPALFATSIANNILLG------KEDASMDRVIEAAKAANAHSFVEGL 329
+ LR ++G+V Q P F SI +NI G K+ +D ++E + +A L
Sbjct: 83 ILELRRKIGMVFQTPNPFLMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSA------L 136
Query: 330 PDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKI 389
+ + ++ LSGGQ+QR+ IAR + P ++L+DE TSALD S ++ + +
Sbjct: 137 WNEVKDKLNTNALSLSGGQQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINL 196
Query: 390 MSNRTTIVVAHRLSTV-RDVDTIMVLKNGQVVESGTHVDL 428
+ T I+V H + R D NG + E + +L
Sbjct: 197 KESYTIIIVTHNMQQAGRISDRTAFFLNGCIEEESSTDEL 236
|
Length = 254 |
| >gnl|CDD|182592 PRK10619, PRK10619, histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 91.6 bits (227), Expect = 2e-20
Identities = 69/235 (29%), Positives = 117/235 (49%), Gaps = 35/235 (14%)
Query: 220 HMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSL----- 274
H V + ++ +AG + +G SGSGKST + + L +P+ G I+++G + +
Sbjct: 18 HEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDG 77
Query: 275 --------QLKWLREQMGLVSQEPALFA-TSIANNIL--------LGKEDASMDRVIEAA 317
QL+ LR ++ +V Q L++ ++ N++ L K++A V A
Sbjct: 78 QLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLA 137
Query: 318 KAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAE 377
K G+ + Q G+ LSGGQ+QR++IARA+ P++LL DE TSALD E
Sbjct: 138 KV--------GIDERAQ---GKYPVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPE 186
Query: 378 SELIVQRALEKIMSN-RTTIVVAHRLSTVRDVDT-IMVLKNGQVVESGTHVDLIS 430
V R ++++ +T +VV H + R V + ++ L G++ E G L
Sbjct: 187 LVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGAPEQLFG 241
|
Length = 257 |
| >gnl|CDD|223473 COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 91.5 bits (228), Expect = 2e-20
Identities = 70/257 (27%), Positives = 112/257 (43%), Gaps = 33/257 (12%)
Query: 836 ELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRF--YDPISGT 893
E++++ + V I + +NL V G A++G +GSGKST+ +M Y+ G
Sbjct: 5 EIKDLHVE--VEGKKEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGE 62
Query: 894 VLIDGYDIRTL--NLRSLRRKIGLVQQEPALFS--------TTIYENIKYGNEDASE-IE 942
+L DG DI L + R+ R I L Q P + E I+
Sbjct: 63 ILFDGEDILELSPDERA-RAGIFLAFQYPVEIPGVTNSDFLRAAMNARRGARGILPEFIK 121
Query: 943 LMKATKAANAHGFISRMPEGYQSHVGDRGVQ--LSGGQKQRVAIARAILKNPSILLLDEA 1000
+K KA + E + +R V SGG+K+R I + +L P + +LDE
Sbjct: 122 ELKE-KAELL-----GLDEEFL----ERYVNEGFSGGEKKRNEILQLLLLEPKLAILDEP 171
Query: 1001 TSALDTASENLIQEALDKLM-EGRTTIMVAHR---LSTIRNADKIAVLQQGKVAEIGSHE 1056
S LD + ++ E ++ L EGR +++ H L I+ DK+ VL G++ + G E
Sbjct: 172 DSGLDIDALKIVAEGINALREEGRGVLIITHYQRLLDYIK-PDKVHVLYDGRIVKSGDPE 230
Query: 1057 QLLRKENGIYKQLIRLQ 1073
E Y L +
Sbjct: 231 LAEELEEKGYDWLKEVV 247
|
Length = 251 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 95.8 bits (239), Expect = 2e-20
Identities = 61/201 (30%), Positives = 96/201 (47%), Gaps = 33/201 (16%)
Query: 835 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTV 894
+E NVS Y + ++L+ ++ G +A+VG +G+GKST++ L+ P+SGTV
Sbjct: 322 LEFENVSKGYD--GGRLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTV 379
Query: 895 LIDGYDIRTLNLRSLRRKIGLVQQEPALF--STTIYENIKYGNEDASEIELMKATKAANA 952
+ KIG Q T+ E + G D E E
Sbjct: 380 ------KVGETV-----KIGYFDQHRDELDPDKTVLEELSEGFPDGDEQE---------V 419
Query: 953 HGFISRM---PEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASE 1009
++ R E + VG LSGG+K R+ +A+ +L+ P++LLLDE T+ LD S
Sbjct: 420 RAYLGRFGFTGEDQEKPVGV----LSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESL 475
Query: 1010 NLIQEALDKLMEGRTTIMVAH 1030
++EAL EG T ++V+H
Sbjct: 476 EALEEALLDF-EG-TVLLVSH 494
|
Length = 530 |
| >gnl|CDD|184196 PRK13636, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 92.2 bits (229), Expect = 3e-20
Identities = 71/229 (31%), Positives = 119/229 (51%), Gaps = 19/229 (8%)
Query: 206 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKIL 265
++ E+ + Y H + +N ++ G+ A +G +G+GKST+ + + +P+SG+IL
Sbjct: 6 LKVEELNYNYSDGTH-ALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRIL 64
Query: 266 LDGH--DLKSLQLKWLREQMGLVSQEP--ALFATSIANNILLGKEDASM--DRVIEAAKA 319
DG D L LRE +G+V Q+P LF+ S+ ++ G + + D V +
Sbjct: 65 FDGKPIDYSRKGLMKLRESVGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKRVDN 124
Query: 320 ANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAE-- 377
A + +E L D + LS GQK+R+AIA ++ PK+L+LDE T+ LD
Sbjct: 125 ALKRTGIEHLKD-------KPTHCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGV 177
Query: 378 SELIVQRALEKIMSNRTTIVVA-HRLSTVR-DVDTIMVLKNGQVVESGT 424
SE I++ +E TI++A H + V D + V+K G+V+ G
Sbjct: 178 SE-IMKLLVEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEGRVILQGN 225
|
Length = 283 |
| >gnl|CDD|172751 PRK14263, PRK14263, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 91.6 bits (227), Expect = 3e-20
Identities = 66/225 (29%), Positives = 106/225 (47%), Gaps = 30/225 (13%)
Query: 857 NLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPI-----SGTVLIDGYDI--RTLNLRSL 909
++ + +G SG GKSTV+ + R D + G V G D+ + ++ +
Sbjct: 28 HVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDPVVV 87
Query: 910 RRKIGLVQQEPALFSTTIYENIKYG------NEDASEIELMKATKAANAHGFISRMPEGY 963
RR IG+V Q+P FS +I++N+ +G D + AA + +
Sbjct: 88 RRYIGMVFQQPNPFSMSIFDNVAFGLRLNRYKGDLGDRVKHALQGAA--------LWDEV 139
Query: 964 QSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLMEGR 1023
+ + G+ LSGGQ+QR+ IARAI P +LLLDE SALD + ++E + +L +
Sbjct: 140 KDKLKVSGLSLSGGQQQRLCIARAIATEPEVLLLDEPCSALDPIATRRVEELMVELKKDY 199
Query: 1024 TTIMVAHRL-STIRNADKIAVL--------QQGKVAEIGSHEQLL 1059
T +V H + IR AD A + G + E+G Q+
Sbjct: 200 TIALVTHNMQQAIRVADTTAFFSVDISQGTRTGYLVEMGPTAQIF 244
|
Length = 261 |
| >gnl|CDD|172730 PRK14242, PRK14242, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 91.0 bits (226), Expect = 4e-20
Identities = 65/215 (30%), Positives = 111/215 (51%), Gaps = 22/215 (10%)
Query: 225 NLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYE--PTS---GKILLDGHDLKSLQLKW- 278
+++ + + A +GPSG GKST + + R+ + P + G+ILLDG ++ +
Sbjct: 24 DISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVDVV 83
Query: 279 -LREQMGLVSQEPALFATSIANNILLG------KEDASM-DRVIEAAKAANAHSFVEGLP 330
LR ++G+V Q+P F SI N+ G K+ A + +RV + + A L
Sbjct: 84 ELRRRVGMVFQKPNPFPKSIFENVAYGLRVNGVKDKAYLAERVERSLRHA-------ALW 136
Query: 331 DGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIM 390
D + ++ E LSGGQ+QR+ IARA+ P++LL+DE SALD + ++ + ++
Sbjct: 137 DEVKDRLHESALGLSGGQQQRLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELK 196
Query: 391 SNRTTIVVAHRL-STVRDVDTIMVLKNGQVVESGT 424
+ T I+V H + R D G+++E G
Sbjct: 197 ARYTIIIVTHNMQQAARVSDVTAFFYMGKLIEVGP 231
|
Length = 253 |
| >gnl|CDD|234199 TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Score = 90.3 bits (225), Expect = 4e-20
Identities = 66/230 (28%), Positives = 109/230 (47%), Gaps = 26/230 (11%)
Query: 851 TIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLN-LRSL 909
I ++L+V G V+G++G GK+T++ +M SG++ +DG DI L
Sbjct: 14 HILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERA 73
Query: 910 RRKIGLVQQEPALFST-TIYENIKYGNEDASEIELMKATKAANAHGFISRMPEGY----- 963
R I V Q +F T+ EN+ G + A + E Y
Sbjct: 74 RAGIAYVPQGREIFPRLTVEENLLTG---------LAALPRRSRK----IPDEIYELFPV 120
Query: 964 -QSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKL--M 1020
+ +G RG LSGGQ+Q++AIARA++ P +LLLDE T + + I + +L
Sbjct: 121 LKEMLGRRGGDLSGGQQQQLAIARALVTRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAE 180
Query: 1021 EGRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGSHEQLLRKENGIYKQL 1069
G ++V L R AD+ V+++G+V G+ ++L E+ + + L
Sbjct: 181 GGMAILLVEQYLDFARELADRYYVMERGRVVASGAGDEL--DEDKVRRYL 228
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 230 |
| >gnl|CDD|213184 cd03217, ABC_FeS_Assembly, ABC-type transport system involved in Fe-S cluster assembly, ATPase component | Back alignment and domain information |
|---|
Score = 89.1 bits (222), Expect = 4e-20
Identities = 59/209 (28%), Positives = 96/209 (45%), Gaps = 43/209 (20%)
Query: 222 VFENLNFSVDAGKTFAFVGPSGSGKSTI--ISMVQRLYEPTSGKILLDGHDLKSLQLKWL 279
+ + +N ++ G+ A +GP+GSGKST+ M YE T G+IL G D+ L +
Sbjct: 15 ILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPE-E 73
Query: 280 REQMG--LVSQEPALFATSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQV 337
R ++G L Q P I K A+ F+ V
Sbjct: 74 RARLGIFLAFQYPP---------------------EIPGVKNAD---FLRY--------V 101
Query: 338 GEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMS-NRTTI 396
EG SGG+K+R I + +L P + +LDE S LD ++ +V + K+ ++ +
Sbjct: 102 NEG---FSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREEGKSVL 158
Query: 397 VVAH--RLSTVRDVDTIMVLKNGQVVESG 423
++ H RL D + VL +G++V+SG
Sbjct: 159 IITHYQRLLDYIKPDRVHVLYDGRIVKSG 187
|
Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. Length = 200 |
| >gnl|CDD|226622 COG4138, BtuD, ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 90.7 bits (225), Expect = 4e-20
Identities = 64/222 (28%), Positives = 110/222 (49%), Gaps = 29/222 (13%)
Query: 856 LNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSL-RRKIG 914
L+ +V AG L +VG +G+GKST+++ M SG++ G + + L R +
Sbjct: 18 LSGEVRAGEILHLVGPNGAGKSTLLA-RMAGMTSGSGSIQFAGQPLEAWSATELARHRAY 76
Query: 915 LVQQEPALFSTTIYENIKYGNEDASEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQL 974
L QQ+ F+ ++ + D + EL+ A A ++ QL
Sbjct: 77 LSQQQTPPFAMPVWHYLTLHQPDKTRTELL--NDVAGALALDDKLGRSTN--------QL 126
Query: 975 SGGQKQRVAIARAILK-----NPS--ILLLDEATSALDTASENLIQEALDKLME-----G 1022
SGG+ QRV +A +L+ NP+ +LLLDE ++LD A ++ ALD+L+ G
Sbjct: 127 SGGEWQRVRLAAVVLQITPDANPAGQLLLLDEPMNSLDVAQQS----ALDRLLSALCQQG 182
Query: 1023 RTTIMVAHRLS-TIRNADKIAVLQQGKVAEIGSHEQLLRKEN 1063
+M +H L+ T+R+A + +L++GK+ G E++L
Sbjct: 183 LAIVMSSHDLNHTLRHAHRAWLLKRGKLLASGRREEVLTPPV 224
|
Length = 248 |
| >gnl|CDD|184594 PRK14264, PRK14264, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 91.8 bits (228), Expect = 5e-20
Identities = 65/216 (30%), Positives = 107/216 (49%), Gaps = 37/216 (17%)
Query: 237 AFVGPSGSGKSTIISMVQRLYEPTS-----GKILLDGHDL--KSLQLKWLREQMGLVSQE 289
A +GPSG GKST + + R+ + G + LDG D+ + L LR+++G+V Q
Sbjct: 75 ALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVNLVELRKRVGMVFQS 134
Query: 290 PALFATSIANNI-----------------LLGKEDA-SMDRVIEAA--KAANAHSFVEGL 329
P F SI NI LLG++D + D ++E + +AA L
Sbjct: 135 PNPFPKSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAA--------L 186
Query: 330 PDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKI 389
D ++ + LSGGQ+QR+ IAR + +P+++L+DE SALD + ++ +E++
Sbjct: 187 WDEVNDRLDDNALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEEL 246
Query: 390 MSNRTTIVVAHRLSTVRDVD--TIMVLKNGQVVESG 423
T +VV H + + T + L G++VE
Sbjct: 247 AEEYTVVVVTHNMQQAARISDQTAVFLTGGELVEYD 282
|
Length = 305 |
| >gnl|CDD|213235 cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of the bacitracin-resistance transporter | Back alignment and domain information |
|---|
Score = 89.2 bits (222), Expect = 5e-20
Identities = 55/224 (24%), Positives = 102/224 (45%), Gaps = 29/224 (12%)
Query: 835 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTV 894
++ +++ Y + ++++L V G +G +G+GK+T + +++ P SG +
Sbjct: 1 LKTNDLTKTYG---KKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEI 57
Query: 895 LIDGYDIRTLNLRSLRRKIGLVQQEPALF-STTIYENIKYGNEDASEIELMKATKAANAH 953
DG R+IG + + P + + T EN++ A
Sbjct: 58 TFDGKS--YQKNIEALRRIGALIEAPGFYPNLTARENLRLL---------------ARLL 100
Query: 954 GFISR-----MPEGYQSHVGDRGV-QLSGGQKQRVAIARAILKNPSILLLDEATSALDTA 1007
G + + + V S G KQR+ IA A+L NP +L+LDE T+ LD
Sbjct: 101 GIRKKRIDEVLDVVGLKDSAKKKVKGFSLGMKQRLGIALALLGNPDLLILDEPTNGLDPD 160
Query: 1008 SENLIQEALDKLM-EGRTTIMVAHRLSTIRN-ADKIAVLQQGKV 1049
++E + L +G T ++ +H LS I+ AD+I ++ +GK+
Sbjct: 161 GIKELRELILSLRDQGITVLISSHLLSEIQKVADRIGIINKGKL 204
|
The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. Length = 208 |
| >gnl|CDD|235150 PRK03695, PRK03695, vitamin B12-transporter ATPase; Provisional | Back alignment and domain information |
|---|
Score = 90.4 bits (225), Expect = 5e-20
Identities = 69/230 (30%), Positives = 115/230 (50%), Gaps = 41/230 (17%)
Query: 856 LNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSL-RRKIG 914
L+ +V AG L +VG +G+GKST+++ M P SG++ G + + L R +
Sbjct: 15 LSAEVRAGEILHLVGPNGAGKSTLLA-RMAGLLPGSGSIQFAGQPLEAWSAAELARHRAY 73
Query: 915 LVQQEPALFSTTIYENIKY--------GNEDASEIELMKATKAANAHGFISRMPEGYQSH 966
L QQ+ F+ +++ Y +A L + +A + R
Sbjct: 74 LSQQQTPPFAMPVFQ---YLTLHQPDKTRTEAVASALNEVAEALGLDDKLGRS------- 123
Query: 967 VGDRGVQLSGGQKQRVAIARAILK-----NPS--ILLLDEATSALDTASENLIQEALDKL 1019
V QLSGG+ QRV +A +L+ NP+ +LLLDE ++LD A + ALD+L
Sbjct: 124 VN----QLSGGEWQRVRLAAVVLQVWPDINPAGQLLLLDEPMNSLDVAQQA----ALDRL 175
Query: 1020 ME-----GRTTIMVAHRLS-TIRNADKIAVLQQGKVAEIGSHEQLLRKEN 1063
+ G +M +H L+ T+R+AD++ +L+QGK+ G +++L EN
Sbjct: 176 LSELCQQGIAVVMSSHDLNHTLRHADRVWLLKQGKLLASGRRDEVLTPEN 225
|
Length = 248 |
| >gnl|CDD|213201 cd03234, ABCG_White, White pigment protein homolog of ABCG transporter subfamily | Back alignment and domain information |
|---|
Score = 89.6 bits (223), Expect = 6e-20
Identities = 54/210 (25%), Positives = 101/210 (48%), Gaps = 13/210 (6%)
Query: 852 IFENLNLKVSAGRSLAVVGQSGSGKSTVISLVM---RFYDPISGTVLIDGYDIRTLNLRS 908
I +++L V +G+ +A++G SGSGK+T++ + SG +L +G +
Sbjct: 22 ILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNG---QPRKPDQ 78
Query: 909 LRRKIGLVQQEPALFST-TIYENIKYGNEDASEIELMKATKAANAHGFISRMPEGYQSHV 967
++ + V+Q+ L T+ E + Y + A + + + + +
Sbjct: 79 FQKCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVE--DVLLRDLALTRI 136
Query: 968 GDRGVQ-LSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLM-EGRTT 1025
G V+ +SGG+++RV+IA +L +P +L+LDE TS LD+ + + L +L R
Sbjct: 137 GGNLVKGISGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRIV 196
Query: 1026 IMVAH--RLSTIRNADKIAVLQQGKVAEIG 1053
I+ H R R D+I +L G++ G
Sbjct: 197 ILTIHQPRSDLFRLFDRILLLSSGEIVYSG 226
|
The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners. Length = 226 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 94.2 bits (235), Expect = 8e-20
Identities = 66/241 (27%), Positives = 108/241 (44%), Gaps = 41/241 (17%)
Query: 206 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKIL 265
I + AY RP + EN++ +++ G+ VG +G+GKST++ ++ EP SG++
Sbjct: 4 ITLENLSLAYGDRP--LLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVT 61
Query: 266 LDGHDLKSLQLKWLREQMGLVSQEPALF--ATSIANNILLGKEDASMDRVIEAAKAANAH 323
++G +SQEP L T + I E + +E A A A
Sbjct: 62 RPKG-----------LRVGYLSQEPPLDPEKTVLDYVIEGFGELRELLAELEEAYALLAD 110
Query: 324 SFVEGLPDGYQTQVGEGG-----------------------TQLSGGQKQRIAIARAVLR 360
E L + G + LSGG ++R+A+ARA+L
Sbjct: 111 PDDELLAELEALLEELDGWTLEARAEEALLGLGFPDEDRPVSSLSGGWRRRVALARALLE 170
Query: 361 NPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRDVDTIMV-LKNGQV 419
P +LLLDE T+ LD ES ++ L++ T IVV+H + +V T ++ L G++
Sbjct: 171 EPDLLLLDEPTNHLDLESIEWLEDYLKR--YPGTVIVVSHDRYFLDNVATHILELDRGKL 228
Query: 420 V 420
Sbjct: 229 T 229
|
Length = 530 |
| >gnl|CDD|184596 PRK14267, PRK14267, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 89.9 bits (223), Expect = 9e-20
Identities = 66/222 (29%), Positives = 110/222 (49%), Gaps = 26/222 (11%)
Query: 220 HMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYE-----PTSGKILLDGHDLKSL 274
+ V + ++ + FA +GPSG GKST++ RL E G++ L G ++ S
Sbjct: 17 NHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSP 76
Query: 275 QLKWL--REQMGLVSQEPALFA-TSIANNILLG-------KEDASMDRVIEAA--KAANA 322
+ + R ++G+V Q P F +I +N+ +G K +D +E A KAA
Sbjct: 77 DVDPIEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAA-- 134
Query: 323 HSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIV 382
L D + ++ + + LSGGQ+QR+ IARA+ PKILL+DE T+ +D +
Sbjct: 135 ------LWDEVKDRLNDYPSNLSGGQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKI 188
Query: 383 QRALEKIMSNRTTIVVAHR-LSTVRDVDTIMVLKNGQVVESG 423
+ L ++ T ++V H R D + L G+++E G
Sbjct: 189 EELLFELKKEYTIVLVTHSPAQAARVSDYVAFLYLGKLIEVG 230
|
Length = 253 |
| >gnl|CDD|226620 COG4136, COG4136, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 88.7 bits (220), Expect = 9e-20
Identities = 63/234 (26%), Positives = 105/234 (44%), Gaps = 39/234 (16%)
Query: 837 LRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDP---ISGT 893
L+NVS + P + N+N ++ G + ++G SG GKST++S ++ +G
Sbjct: 5 LKNVSLRLPGS---CLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGE 61
Query: 894 VLIDGYDIRTLNLRSLRRKIGLVQQEPALFST-TIYENIKYGNEDASEIELMKATKAANA 952
+ ++ + L + +R+IG++ Q+ LF ++ +N+ + + ++ AANA
Sbjct: 62 LWLNEQRLDMLP--AAQRQIGILFQDALLFPHLSVGQNLLFAL--PATLKGNARRNAANA 117
Query: 953 -------HGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALD 1005
G + P LSGGQ+ RVA+ RA+L P LLLDE S LD
Sbjct: 118 ALERSGLDGAFHQDPA-----------TLSGGQRARVALLRALLAQPKALLLDEPFSRLD 166
Query: 1006 TA-SENLIQEALDKLME-GRTTIMVAHRLSTIRNADKIAVLQQGKVAEIGSHEQ 1057
A + Q ++ G T+ V H D V +V E+ EQ
Sbjct: 167 VALRDQFRQWVFSEVRAAGIPTVQVTH--------DLQDVPAGSRVIEMAQWEQ 212
|
Length = 213 |
| >gnl|CDD|184203 PRK13643, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 90.6 bits (224), Expect = 9e-20
Identities = 68/237 (28%), Positives = 127/237 (53%), Gaps = 15/237 (6%)
Query: 206 IEFSEVCFAY-PSRPHM--VFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSG 262
I+F +V + Y P+ P +++ V G A +G +GSGKST++ + L +PT G
Sbjct: 2 IKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEG 61
Query: 263 KI----LLDGHDLKSLQLKWLREQMGLVSQEP--ALFATSIANNILLGKEDASMDRVIEA 316
K+ ++ K ++K +R+++G+V Q P LF ++ ++ G ++ + + +A
Sbjct: 62 KVTVGDIVVSSTSKQKEIKPVRKKVGVVFQFPESQLFEETVLKDVAFGPQNFGIPKE-KA 120
Query: 317 AKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDA 376
K A + GL D + + +LSGGQ +R+AIA + P++L+LDE T+ LD
Sbjct: 121 EKIAAEKLEMVGLADEFWEK---SPFELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDP 177
Query: 377 ESELIVQRALEKI-MSNRTTIVVAHRLSTVRD-VDTIMVLKNGQVVESGTHVDLISK 431
++ + + + E I S +T ++V H + V D D + +L+ G ++ GT D+ +
Sbjct: 178 KARIEMMQLFESIHQSGQTVVLVTHLMDDVADYADYVYLLEKGHIISCGTPSDVFQE 234
|
Length = 288 |
| >gnl|CDD|182716 PRK10771, thiQ, thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 88.9 bits (221), Expect = 1e-19
Identities = 71/234 (30%), Positives = 119/234 (50%), Gaps = 26/234 (11%)
Query: 220 HMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWL 279
M F + +V+ G+ A +GPSG+GKST+++++ P SG + L+G D +
Sbjct: 15 PMRF---DLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPPS-- 69
Query: 280 REQMGLVSQEPALFA-TSIANNILLG-----KEDASMDRVIEA-AKAANAHSFVEGLPDG 332
R + ++ QE LF+ ++A NI LG K +A+ + A A+ + LP
Sbjct: 70 RRPVSMLFQENNLFSHLTVAQNIGLGLNPGLKLNAAQREKLHAIARQMGIEDLLARLP-- 127
Query: 333 YQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSN 392
QLSGGQ+QR+A+AR ++R ILLLDE SALD + + ++
Sbjct: 128 ---------GQLSGGQRQRVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSQVCQE 178
Query: 393 R--TTIVVAHRLS-TVRDVDTIMVLKNGQVVESGTHVDLISKGGEYAALVNLQS 443
R T ++V+H L R +V+ +G++ G +L+S +AL+ ++S
Sbjct: 179 RQLTLLMVSHSLEDAARIAPRSLVVADGRIAWDGPTDELLSGKASASALLGIKS 232
|
Length = 232 |
| >gnl|CDD|224057 COG1134, TagH, ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 89.2 bits (222), Expect = 1e-19
Identities = 56/243 (23%), Positives = 104/243 (42%), Gaps = 38/243 (15%)
Query: 834 NIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGT 893
L+ ++ + ++++ ++ G + ++G +G+GKST++ L+ Y P SG
Sbjct: 24 KKRLKGLAKGGRKVAEFWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGK 83
Query: 894 VLIDGYDIRTLNLRSLRRKIGL-VQQEPALFSTTIYENIK-YGNEDASEIELMKATKAAN 951
V + G + L I L +P T ENI G ++ T+
Sbjct: 84 VKVTG-KVAPL--------IELGAGFDP---ELTGRENIYLRG-------LILGLTRKEI 124
Query: 952 AHGFISRMPEGYQ-SHVGDRGVQ----LSGGQKQRVAIARAILKNPSILLLDEATSALDT 1006
++ E + + +GD Q S G R+A + A P ILLLDE + D
Sbjct: 125 DE----KVDEIIEFAELGDFIDQPVKTYSSGMYARLAFSVATHVEPDILLLDEVLAVGD- 179
Query: 1007 ASENLIQEALDKLME----GRTTIMVAHRLSTIRNA-DKIAVLQQGKVAEIGSHEQLLRK 1061
++ L++L E +T ++V+H L I+ D+ L+ G++ GS E+++
Sbjct: 180 --AAFQEKCLERLNELVEKNKTIVLVSHDLGAIKQYCDRAIWLEHGQIRMEGSPEEVIPA 237
Query: 1062 ENG 1064
Sbjct: 238 YEE 240
|
Length = 249 |
| >gnl|CDD|213185 cd03218, ABC_YhbG, ATP-binding cassette component of YhbG transport system | Back alignment and domain information |
|---|
Score = 89.1 bits (222), Expect = 1e-19
Identities = 65/220 (29%), Positives = 111/220 (50%), Gaps = 17/220 (7%)
Query: 218 RPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLK 277
V ++ SV G+ +GP+G+GK+T M+ L +P SGKILLDG D+ L +
Sbjct: 11 GKRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMH 70
Query: 278 WLREQMGL--VSQEPALFAT-SIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQ 334
R ++G+ + QE ++F ++ NIL E + + K E L + +
Sbjct: 71 -KRARLGIGYLPQEASIFRKLTVEENILAVLEIRGLSKKEREEKL-------EELLEEFH 122
Query: 335 TQ--VGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSN 392
+ LSGG+++R+ IARA+ NPK LLLDE + +D + +Q+ + KI+ +
Sbjct: 123 ITHLRKSKASSLSGGERRRVEIARALATNPKFLLLDEPFAGVDPIAVQDIQK-IIKILKD 181
Query: 393 RTTIVVA--HRLS-TVRDVDTIMVLKNGQVVESGTHVDLI 429
R V+ H + T+ D ++ G+V+ GT ++
Sbjct: 182 RGIGVLITDHNVRETLSITDRAYIIYEGKVLAEGTPEEIA 221
|
The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. Length = 232 |
| >gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Score = 93.6 bits (233), Expect = 1e-19
Identities = 73/227 (32%), Positives = 114/227 (50%), Gaps = 38/227 (16%)
Query: 219 PHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSL---Q 275
++V +N++F++ G+T VG SGSGKST + RL + G+I DG L +L Q
Sbjct: 298 HNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLI-NSQGEIWFDGQPLHNLNRRQ 356
Query: 276 LKWLREQMGLVSQEP--AL-----FATSIANNILLGKEDASM----DRVIEAAKAANAHS 324
L +R ++ +V Q+P +L I + + + S +VI +
Sbjct: 357 LLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQPTLSAAQREQQVIAVMEEV---- 412
Query: 325 FVEGL-PDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQ 383
GL P+ E SGGQ+QRIAIARA++ P +++LDE TS+LD VQ
Sbjct: 413 ---GLDPETRHRYPAE----FSGGQRQRIAIARALILKPSLIILDEPTSSLDKT----VQ 461
Query: 384 R---ALEKIMSNR---TTIVVAHRLSTVRDV-DTIMVLKNGQVVESG 423
AL K + + + ++H L VR + ++VL+ G+VVE G
Sbjct: 462 AQILALLKSLQQKHQLAYLFISHDLHVVRALCHQVIVLRQGEVVEQG 508
|
Length = 529 |
| >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Score = 93.7 bits (233), Expect = 1e-19
Identities = 70/255 (27%), Positives = 127/255 (49%), Gaps = 19/255 (7%)
Query: 822 DPASKEVTEIKGNI-ELRNVSFKYPV--RPDITIFENLNLKVSAGRSLAVVGQSGSGKST 878
+ + E+ I ++RNVS +Y R + +N++L+V G +VG SG+GK+T
Sbjct: 266 EVEKECEVEVGEPIIKVRNVSKRYISVDRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTT 325
Query: 879 VISLVMRFYDPISGTV-------LIDGYDIRTLNLRSLRRKIGLVQQEPALFS-TTIYEN 930
+ ++ +P SG V +D +R IG++ QE L+ T+ +N
Sbjct: 326 LSKIIAGVLEPTSGEVNVRVGDEWVDMTKPGPDGRGRAKRYIGILHQEYDLYPHRTVLDN 385
Query: 931 I--KYGNEDASEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAI 988
+ G E E+ MKA GF E D +LS G++ RVA+A+ +
Sbjct: 386 LTEAIGLELPDELARMKAVITLKMVGFDEEKAEEILDKYPD---ELSEGERHRVALAQVL 442
Query: 989 LKNPSILLLDEATSALDTASENLIQEALDKLME--GRTTIMVAHRLSTIRN-ADKIAVLQ 1045
+K P I++LDE T +D ++ + ++ K E +T I+V+H + + + D+ A+++
Sbjct: 443 IKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDMDFVLDVCDRAALMR 502
Query: 1046 QGKVAEIGSHEQLLR 1060
GK+ +IG E+++
Sbjct: 503 DGKIVKIGDPEEIVE 517
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520 |
| >gnl|CDD|233207 TIGR00955, 3a01204, The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Score = 94.0 bits (234), Expect = 1e-19
Identities = 61/220 (27%), Positives = 106/220 (48%), Gaps = 38/220 (17%)
Query: 863 GRSLAVVGQSGSGKSTVISLVMRFYDP----ISGTVLIDGYDIRTLNLRSLRRKIGLVQQ 918
G LAV+G SG+GK+T+++ + F P SG+VL++G ++ + +R VQQ
Sbjct: 51 GELLAVMGSSGAGKTTLMNALA-FRSPKGVKGSGSVLLNG---MPIDAKEMRAISAYVQQ 106
Query: 919 EPALFST-TIYENI------KYGNEDASE---------IELMKATKAANAHGFISRMPEG 962
+ T T+ E++ + + ++ + K AN
Sbjct: 107 DDLFIPTLTVREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANT---------- 156
Query: 963 YQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKL-ME 1021
+ V R LSGG+++R+A A +L +P +L DE TS LD+ + + L L +
Sbjct: 157 -RIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPTSGLDSFMAYSVVQVLKGLAQK 215
Query: 1022 GRTTIMVAHRLST--IRNADKIAVLQQGKVAEIGSHEQLL 1059
G+T I H+ S+ DKI ++ +G+VA +GS +Q +
Sbjct: 216 GKTIICTIHQPSSELFELFDKIILMAEGRVAYLGSPDQAV 255
|
[Transport and binding proteins, Other]. Length = 617 |
| >gnl|CDD|183056 PRK11248, tauB, taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 89.4 bits (222), Expect = 1e-19
Identities = 52/172 (30%), Positives = 90/172 (52%), Gaps = 13/172 (7%)
Query: 206 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKIL 265
++ S + Y +P E++N ++++G+ +GPSG GK+T+++++ G I
Sbjct: 2 LQISHLYADYGGKP--ALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSIT 59
Query: 266 LDGHDLKSLQLKWLREQMGLVSQEPALFA-TSIANNILLGKEDASMDRVIEAAKAANAHS 324
LDG ++ + G+V Q L ++ +N+ G + A ++++ A
Sbjct: 60 LDGKPVEGPG-----AERGVVFQNEGLLPWRNVQDNVAFGLQLAGVEKMQRLEIAHQMLK 114
Query: 325 FVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDA 376
V GL + + QLSGGQ+QR+ IARA+ NP++LLLDE ALDA
Sbjct: 115 KV-GLEGAEKRYI----WQLSGGQRQRVGIARALAANPQLLLLDEPFGALDA 161
|
Length = 255 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 92.7 bits (231), Expect = 2e-19
Identities = 73/228 (32%), Positives = 120/228 (52%), Gaps = 24/228 (10%)
Query: 222 VFENLNFSVDAGKTFAFVGPSGSGKS-TIISMVQRLYEPT----SGKILLDGHDLKSL-- 274
+ ++F ++AG+T A VG SGSGKS T +S++ L P SG IL DG DL +
Sbjct: 25 AVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAASE 84
Query: 275 -QLKWLR-EQMGLVSQEPALFATSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDG 332
QL+ +R ++G++ QEP TS+ +GK+ A + R+ A A + L +
Sbjct: 85 RQLRGVRGNKIGMIFQEPM---TSLNPLHTIGKQLAEVLRLHRGLSRAAARARALELLE- 140
Query: 333 YQTQVGEGGT-------QLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRA 385
+ E +LSGGQ+QR+ IA A+ P +L+ DE T+ALD + +
Sbjct: 141 -LVGIPEPEKRLDAYPHELSGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDL 199
Query: 386 LEKIMSNR--TTIVVAHRLSTVRDV-DTIMVLKNGQVVESGTHVDLIS 430
L+++ + + + H L VR D + V+++G++VE+GT L +
Sbjct: 200 LKELQAELGMAILFITHDLGIVRKFADRVYVMQHGEIVETGTTETLFA 247
|
Length = 534 |
| >gnl|CDD|213187 cd03220, ABC_KpsT_Wzt, ATP-binding cassette component of polysaccharide transport system | Back alignment and domain information |
|---|
Score = 88.0 bits (219), Expect = 2e-19
Identities = 71/249 (28%), Positives = 108/249 (43%), Gaps = 55/249 (22%)
Query: 835 IELRNVSFKYPV-------------------RPDITIFENLNLKVSAGRSLAVVGQSGSG 875
IEL NVS YP + ++++ +V G + ++G++G+G
Sbjct: 1 IELENVSKSYPTYKGGSSSLKKLGILGRKGEVGEFWALKDVSFEVPRGERIGLIGRNGAG 60
Query: 876 KSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRKIGL-VQQEPALFSTTIYENIK-- 932
KST++ L+ Y P SGTV + G + SL +GL P L T ENI
Sbjct: 61 KSTLLRLLAGIYPPDSGTVTVRG------RVSSL---LGLGGGFNPEL---TGRENIYLN 108
Query: 933 ---YGNEDASEIELMKATKAANAHGFI---SRMPEGYQSHVGDRGVQLSGGQKQRVAIAR 986
G EI+ I S + + V S G K R+A A
Sbjct: 109 GRLLGL-SRKEIDEKID--------EIIEFSELGDFIDLPVK----TYSSGMKARLAFAI 155
Query: 987 AILKNPSILLLDEATSALDTASENLIQEALDKLME-GRTTIMVAHRLSTIRN-ADKIAVL 1044
A P ILL+DE + D A + Q L +L++ G+T I+V+H S+I+ D+ VL
Sbjct: 156 ATALEPDILLIDEVLAVGDAAFQEKCQRRLRELLKQGKTVILVSHDPSSIKRLCDRALVL 215
Query: 1045 QQGKVAEIG 1053
++GK+ G
Sbjct: 216 EKGKIRFDG 224
|
The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2. Length = 224 |
| >gnl|CDD|213184 cd03217, ABC_FeS_Assembly, ABC-type transport system involved in Fe-S cluster assembly, ATPase component | Back alignment and domain information |
|---|
Score = 87.2 bits (217), Expect = 2e-19
Identities = 63/226 (27%), Positives = 97/226 (42%), Gaps = 45/226 (19%)
Query: 849 DITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRF--YDPISGTVLIDGYDIRTL-- 904
I + +NL + G A++G +GSGKST+ +M Y+ G +L G DI L
Sbjct: 12 GKEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPP 71
Query: 905 NLRSLRRKIGLVQQEPALFS-TTIYENIKYGNEDASEIELMKATKAANAHGFISRMPEGY 963
R+ R I L Q P + ++Y NE GF
Sbjct: 72 EERA-RLGIFLAFQYPPEIPGVKNADFLRYVNE-----------------GF-------- 105
Query: 964 QSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLM-EG 1022
SGG+K+R I + +L P + +LDE S LD + L+ E ++KL EG
Sbjct: 106 -----------SGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREEG 154
Query: 1023 RTTIMVAH--RLSTIRNADKIAVLQQGKVAEIGSHEQLLRKENGIY 1066
++ +++ H RL D++ VL G++ + G E L E Y
Sbjct: 155 KSVLIITHYQRLLDYIKPDRVHVLYDGRIVKSGDKELALEIEKKGY 200
|
Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. Length = 200 |
| >gnl|CDD|183056 PRK11248, tauB, taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 88.6 bits (220), Expect = 2e-19
Identities = 61/200 (30%), Positives = 104/200 (52%), Gaps = 18/200 (9%)
Query: 835 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTV 894
+++ ++ Y +P E++NL + +G L V+G SG GK+T+++L+ F G++
Sbjct: 2 LQISHLYADYGGKP---ALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSI 58
Query: 895 LIDGYDIRTLNLRSLRRKIGLVQQEPALFS-TTIYENIKYGNEDASEIELMKATKAANAH 953
+DG + + R G+V Q L + +N+ +G + A + K + AH
Sbjct: 59 TLDG---KPVEGPGAER--GVVFQNEGLLPWRNVQDNVAFGLQLAG---VEKMQRLEIAH 110
Query: 954 GFISRMP-EGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLI 1012
+ ++ EG + QLSGGQ+QRV IARA+ NP +LLLDE ALD + +
Sbjct: 111 QMLKKVGLEGAEKR---YIWQLSGGQRQRVGIARALAANPQLLLLDEPFGALDAFTREQM 167
Query: 1013 QEALDKLME--GRTTIMVAH 1030
Q L KL + G+ +++ H
Sbjct: 168 QTLLLKLWQETGKQVLLITH 187
|
Length = 255 |
| >gnl|CDD|224060 COG1137, YhbG, ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 88.0 bits (219), Expect = 2e-19
Identities = 65/236 (27%), Positives = 119/236 (50%), Gaps = 12/236 (5%)
Query: 832 KGNIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPIS 891
+ N++ Y R + +++L+V++G + ++G +G+GK+T +++ P S
Sbjct: 2 MSTLVAENLAKSYKKRK---VVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDS 58
Query: 892 GTVLIDGYDIRTLNL-RSLRRKIGLVQQEPALF-STTIYENIKYGNEDASEIELMKATKA 949
G +L+D DI L + + R IG + QE ++F T+ +NI EI KA
Sbjct: 59 GKILLDDEDITKLPMHKRARLGIGYLPQEASIFRKLTVEDNIMA----VLEIREKDLKKA 114
Query: 950 ANAHGFISRMPEGYQSHVGDR-GVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTAS 1008
+ + E + +H+ D LSGG+++RV IARA+ NP +LLDE + +D +
Sbjct: 115 ERKEELDALLEEFHITHLRDSKAYSLSGGERRRVEIARALAANPKFILLDEPFAGVDPIA 174
Query: 1009 ENLIQEALDKLMEGRTTIMVA-HRL-STIRNADKIAVLQQGKVAEIGSHEQLLRKE 1062
IQ + L + +++ H + T+ D+ ++ GKV GS E+++ E
Sbjct: 175 VIDIQRIIKHLKDRGIGVLITDHNVRETLDICDRAYIISDGKVLAEGSPEEIVNNE 230
|
Length = 243 |
| >gnl|CDD|237456 PRK13641, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 89.1 bits (221), Expect = 3e-19
Identities = 68/233 (29%), Positives = 120/233 (51%), Gaps = 27/233 (11%)
Query: 206 IEFSEVCFAY-PSRPHMV--FENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSG 262
I+F V + Y P P +N++F ++ G A VG +GSGKST++ L +P+SG
Sbjct: 3 IKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSG 62
Query: 263 KILLDGHDLK----SLQLKWLREQMGLVSQ--EPALFATSIANNILLG------KEDASM 310
I + G+ + + LK LR+++ LV Q E LF ++ ++ G ED +
Sbjct: 63 TITIAGYHITPETGNKNLKKLRKKVSLVFQFPEAQLFENTVLKDVEFGPKNFGFSEDEAK 122
Query: 311 DRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEA 370
++ ++ K GL + + + +LSGGQ +R+AIA + P+IL LDE
Sbjct: 123 EKALKWLKKV-------GLSE---DLISKSPFELSGGQMRRVAIAGVMAYEPEILCLDEP 172
Query: 371 TSALDAESEL-IVQRALEKIMSNRTTIVVAHRLSTVRD-VDTIMVLKNGQVVE 421
+ LD E ++Q + + T I+V H + V + D ++VL++G++++
Sbjct: 173 AAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMDDVAEYADDVLVLEHGKLIK 225
|
Length = 287 |
| >gnl|CDD|106587 PRK13644, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 88.9 bits (220), Expect = 3e-19
Identities = 68/230 (29%), Positives = 117/230 (50%), Gaps = 12/230 (5%)
Query: 206 IEFSEVCFAYPS-RPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKI 264
I V ++YP P + EN+N + G+ +G +GSGKST+ + L P GK+
Sbjct: 2 IRLENVSYSYPDGTPAL--ENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKV 59
Query: 265 LLDGHDLKSL-QLKWLREQMGLVSQEP--ALFATSIANNILLGKEDASMDRVIEAAKAAN 321
L+ G D +L+ +R+ +G+V Q P ++ ++ G E+ + IE K +
Sbjct: 60 LVSGIDTGDFSKLQGIRKLVGIVFQNPETQFVGRTVEEDLAFGPENLCLPP-IEIRKRVD 118
Query: 322 AHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELI 381
+ E + Y+ + + LSGGQ Q +A+A + P+ L+ DE TS LD +S +
Sbjct: 119 -RALAEIGLEKYRHRSPK---TLSGGQGQCVALAGILTMEPECLIFDEVTSMLDPDSGIA 174
Query: 382 VQRALEKIMSNRTTIV-VAHRLSTVRDVDTIMVLKNGQVVESGTHVDLIS 430
V ++K+ TIV + H L + D D I+V+ G++V G +++S
Sbjct: 175 VLERIKKLHEKGKTIVYITHNLEELHDADRIIVMDRGKIVLEGEPENVLS 224
|
Length = 274 |
| >gnl|CDD|224026 COG1101, PhnK, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 88.2 bits (219), Expect = 3e-19
Identities = 61/209 (29%), Positives = 102/209 (48%), Gaps = 11/209 (5%)
Query: 222 VFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLRE 281
L+ + G +G +G+GKST+++ + +PTSG+IL+DG D+ R
Sbjct: 21 ALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKKS-VAKRA 79
Query: 282 QM-GLVSQEPAL---FATSIANNILLGKEDASMDRVIEAAKAANAHSFVE---GLPDGYQ 334
+ V Q+P +I N+ L + + A SF E L G +
Sbjct: 80 NLLARVFQDPLAGTAPELTIEENLALAESRGKKRGLSSALNERRRSSFRERLARLGLGLE 139
Query: 335 TQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNR- 393
++ + LSGGQ+Q +++ A L PKILLLDE T+ALD ++ V KI+
Sbjct: 140 NRLSDRIGLLSGGQRQALSLLMATLHPPKILLLDEHTAALDPKTAEFVMELTAKIVEEHK 199
Query: 394 -TTIVVAHRLSTVRDV-DTIMVLKNGQVV 420
TT++V H + D + +++L +G++V
Sbjct: 200 LTTLMVTHNMEDALDYGNRLIMLHSGKIV 228
|
Length = 263 |
| >gnl|CDD|237422 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 88.3 bits (220), Expect = 3e-19
Identities = 69/242 (28%), Positives = 110/242 (45%), Gaps = 43/242 (17%)
Query: 206 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKIL 265
+E + R + ++++ ++ G+ A +GP+G+GKST++ + P SG++
Sbjct: 3 LEARNLSVRLGGRT--LLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVR 60
Query: 266 LDGHDLKSLQLKWLREQMGLVSQEPAL-FATSIANNILLG--------KEDASMDRVIEA 316
L+G L L + ++ Q +L F ++ + +G ED D ++ A
Sbjct: 61 LNGRPLADWSPAELARRRAVLPQHSSLSFPFTVEEVVAMGRAPHGLSRAED---DALVAA 117
Query: 317 AKAANAHSFVEGLPD-GYQTQVGEGGTQLSGGQKQRIAIARAVL-------RNPKILLLD 368
A A + L Y QLSGG++QR+ +AR VL P+ LLLD
Sbjct: 118 ALAQVD---LAHLAGRDYP--------QLSGGEQQRVQLAR-VLAQLWEPDGPPRWLLLD 165
Query: 369 EATSALDAESELIV-----QRALEKIMSNRTTIVVAHRLS-TVRDVDTIMVLKNGQVVES 422
E TSALD + V Q A E IVV H L+ R D I++L G++V
Sbjct: 166 EPTSALDLAHQHHVLRLARQLAHE---RGLAVIVVLHDLNLAARYADRIVLLHQGRLVAD 222
Query: 423 GT 424
GT
Sbjct: 223 GT 224
|
Length = 258 |
| >gnl|CDD|237419 PRK13536, PRK13536, nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Score = 90.3 bits (224), Expect = 3e-19
Identities = 68/230 (29%), Positives = 114/230 (49%), Gaps = 21/230 (9%)
Query: 835 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTV 894
I+L VS Y + + L+ V++G ++G +G+GKST+ +++ P +G +
Sbjct: 42 IDLAGVSKSYGDKA---VVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKI 98
Query: 895 LIDGYDIRTLNLRSLRRKIGLVQQEPAL-FSTTIYENI----KYGNEDASEIELMKATKA 949
+ G + R R +IG+V Q L T+ EN+ +Y EIE + +
Sbjct: 99 TVLGVPVPA-RARLARARIGVVPQFDNLDLEFTVRENLLVFGRYFGMSTREIEAVIPSLL 157
Query: 950 ANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASE 1009
A +S R LSGG K+R+ +ARA++ +P +L+LDE T+ LD +
Sbjct: 158 EFAR---------LESKADARVSDLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHAR 208
Query: 1010 NLIQEALDKLM-EGRTTIMVAHRLSTI-RNADKIAVLQQG-KVAEIGSHE 1056
+LI E L L+ G+T ++ H + R D++ VL+ G K+AE H
Sbjct: 209 HLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLEAGRKIAEGRPHA 258
|
Length = 340 |
| >gnl|CDD|172740 PRK14252, PRK14252, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 88.1 bits (218), Expect = 4e-19
Identities = 66/222 (29%), Positives = 115/222 (51%), Gaps = 26/222 (11%)
Query: 220 HMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYE--PTS---GKILL--DGHDLK 272
+ +N+N V + A +GPSG GKST + R+++ P + G+I+L D ++
Sbjct: 29 YQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNIL 88
Query: 273 SLQLK--WLREQMGLVSQEPALFATSIANNILLG------KEDASMDRVIEAAKAANAHS 324
S ++ +R ++ +V Q+P F SI N+ G K + ++ +E A A
Sbjct: 89 SPEVDPIEVRMRISMVFQKPNPFPKSIFENVAYGLRIRGVKRRSILEERVENALRNAA-- 146
Query: 325 FVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQR 384
L D + ++G+ LSGGQ+QR+ IARA+ +P+ILL DE TSALD + ++
Sbjct: 147 ----LWDEVKDRLGDLAFNLSGGQQQRLCIARALATDPEILLFDEPTSALDPIATASIEE 202
Query: 385 ALEKIMSNRTTIVVAHRL---STVRDVDTIMVLKNGQVVESG 423
+ + + T ++V H + + V D M + G+++E G
Sbjct: 203 LISDLKNKVTILIVTHNMQQAARVSDYTAYMYM--GELIEFG 242
|
Length = 265 |
| >gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Score = 91.7 bits (228), Expect = 4e-19
Identities = 75/257 (29%), Positives = 124/257 (48%), Gaps = 23/257 (8%)
Query: 835 IELRNVSFKYPVRPDI--------TIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRF 886
+++ + +P+R I + +N++ + G +L +VG+SGSGKST ++R
Sbjct: 276 LDVEQLQVAFPIRKGILKRTVDHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRL 335
Query: 887 YDPISGTVLIDGYDIRTLNLRSL---RRKIGLVQQEP--ALFSTTIYENIKYGNEDASEI 941
G + DG + LN R L R +I +V Q+P +L I E+ +
Sbjct: 336 I-NSQGEIWFDGQPLHNLNRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQII---EEGLRV 391
Query: 942 ELMKATKAANAHGFISRMPE-GYQSHVGDR-GVQLSGGQKQRVAIARAILKNPSILLLDE 999
+ A I+ M E G R + SGGQ+QR+AIARA++ PS+++LDE
Sbjct: 392 HQPTLSAAQREQQVIAVMEEVGLDPETRHRYPAEFSGGQRQRIAIARALILKPSLIILDE 451
Query: 1000 ATSALDTASENLIQEALDKLMEGR--TTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGSHE 1056
TS+LD + I L L + + ++H L +R ++ VL+QG+V E G E
Sbjct: 452 PTSSLDKTVQAQILALLKSLQQKHQLAYLFISHDLHVVRALCHQVIVLRQGEVVEQGDCE 511
Query: 1057 QLLRKENGIY-KQLIRL 1072
++ Y +QL+ L
Sbjct: 512 RVFAAPQQEYTRQLLAL 528
|
Length = 529 |
| >gnl|CDD|184210 PRK13651, PRK13651, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 88.6 bits (220), Expect = 6e-19
Identities = 63/257 (24%), Positives = 115/257 (44%), Gaps = 35/257 (13%)
Query: 205 QIEFSEVCFAYPSRPHMVF---ENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTS 261
QI+ + + + +N++ ++ G+ A +G +GSGK+T I + L P +
Sbjct: 2 QIKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDT 61
Query: 262 GKI---LLDGHDLKSL---------------------QLKWLREQMGLVSQ--EPALFAT 295
G I D + K ++K +R ++G+V Q E LF
Sbjct: 62 GTIEWIFKDEKNKKKTKEKEKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQ 121
Query: 296 SIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIA 355
+I +I+ G + + EA K A + + GL + Y + +LSGGQK+R+A+A
Sbjct: 122 TIEKDIIFGPVSMGVSKE-EAKKRAAKYIELVGLDESY---LQRSPFELSGGQKRRVALA 177
Query: 356 RAVLRNPKILLLDEATSALDAESELIVQRALEKI-MSNRTTIVVAHRLSTV-RDVDTIMV 413
+ P L+ DE T+ LD + + + + +T I+V H L V +
Sbjct: 178 GILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLDNVLEWTKRTIF 237
Query: 414 LKNGQVVESGTHVDLIS 430
K+G++++ G D++S
Sbjct: 238 FKDGKIIKDGDTYDILS 254
|
Length = 305 |
| >gnl|CDD|236997 PRK11831, PRK11831, putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Score = 87.9 bits (218), Expect = 6e-19
Identities = 64/238 (26%), Positives = 121/238 (50%), Gaps = 28/238 (11%)
Query: 835 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTV 894
+++R VSF R + IF+N++L V G+ A++G SG GK+T++ L+ P G +
Sbjct: 8 VDMRGVSFT---RGNRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEI 64
Query: 895 LIDGYDIRTLNLRSL---RRKIGLVQQEPALFS-TTIYENIKYGNEDASEI--ELMKAT- 947
L DG +I ++ L R+++ ++ Q ALF+ +++N+ Y + +++ L+ +T
Sbjct: 65 LFDGENIPAMSRSRLYTVRKRMSMLFQSGALFTDMNVFDNVAYPLREHTQLPAPLLHSTV 124
Query: 948 ----KAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSA 1003
+A G MP +LSGG +R A+ARAI P +++ DE
Sbjct: 125 MMKLEAVGLRGAAKLMPS-----------ELSGGMARRAALARAIALEPDLIMFDEPFVG 173
Query: 1004 LDTASENLIQEALDKLME--GRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGSHEQL 1058
D + ++ + + +L G T ++V+H + + + AD ++ K+ GS + L
Sbjct: 174 QDPITMGVLVKLISELNSALGVTCVVVSHDVPEVLSIADHAYIVADKKIVAHGSAQAL 231
|
Length = 269 |
| >gnl|CDD|236554 PRK09536, btuD, corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 90.3 bits (224), Expect = 6e-19
Identities = 64/239 (26%), Positives = 118/239 (49%), Gaps = 29/239 (12%)
Query: 835 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTV 894
I++ ++S + D T+ + ++L V G + +VG +G+GK+T++ + P +GTV
Sbjct: 4 IDVSDLSVE---FGDTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTV 60
Query: 895 LIDGYDIRTLNLRSLRRKIGLVQQEPAL-FSTTIYENIKYGN----------EDASEIEL 943
L+ G D+ L+ R+ R++ V Q+ +L F + + ++ G + +
Sbjct: 61 LVAGDDVEALSARAASRRVASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAV 120
Query: 944 MKATKAANAHGFISRMPEGYQSHVGDRGV-QLSGGQKQRVAIARAILKNPSILLLDEATS 1002
+A + F DR V LSGG++QRV +ARA+ + +LLLDE T+
Sbjct: 121 ERAMERTGVAQFA------------DRPVTSLSGGERQRVLLARALAQATPVLLLDEPTA 168
Query: 1003 ALDTASENLIQEALDKLME-GRTTIMVAHRLS-TIRNADKIAVLQQGKVAEIGSHEQLL 1059
+LD + E + +L++ G+T + H L R D++ +L G+V G +L
Sbjct: 169 SLDINHQVRTLELVRRLVDDGKTAVAAIHDLDLAARYCDELVLLADGRVRAAGPPADVL 227
|
Length = 402 |
| >gnl|CDD|236689 PRK10419, nikE, nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Score = 87.8 bits (218), Expect = 6e-19
Identities = 68/221 (30%), Positives = 111/221 (50%), Gaps = 14/221 (6%)
Query: 220 HMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSL---QL 276
V N++ S+ +G+T A +G SG GKST+ ++ L P+ G + G L L Q
Sbjct: 25 QTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNRAQR 84
Query: 277 KWLREQMGLVSQEPALFATSIANNI--LLGKEDASMDRVIEAAKAANAHSFVE--GLPDG 332
K R + +V Q+ ++ A + + ++ + + + +A + A A + L D
Sbjct: 85 KAFRRDIQMVFQD-SISAVNPRKTVREIIREPLRHLLSLDKAERLARASEMLRAVDLDDS 143
Query: 333 YQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSN 392
+ QLSGGQ QR+ +ARA+ PK+L+LDEA S LD + V R L+K+
Sbjct: 144 VLDKRPP---QLSGGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQ 200
Query: 393 RTT--IVVAHRLSTV-RDVDTIMVLKNGQVVESGTHVDLIS 430
T + + H L V R +MV+ NGQ+VE+ D ++
Sbjct: 201 FGTACLFITHDLRLVERFCQRVMVMDNGQIVETQPVGDKLT 241
|
Length = 268 |
| >gnl|CDD|237419 PRK13536, PRK13536, nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Score = 88.7 bits (220), Expect = 8e-19
Identities = 83/303 (27%), Positives = 136/303 (44%), Gaps = 33/303 (10%)
Query: 184 ENSHSSERPGDDGITLPKLAGQIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSG 243
E H I I+ + V +Y + V L+F+V +G+ F +GP+G
Sbjct: 20 ERKHQGISEAKASIPGSMSTVAIDLAGVSKSYGDKA--VVNGLSFTVASGECFGLLGPNG 77
Query: 244 SGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGLVSQEPAL---FATSIANN 300
+GKSTI M+ + P +GKI + G + + + + R ++G+V Q L F T N
Sbjct: 78 AGKSTIARMILGMTSPDAGKITVLGVPVPA-RARLARARIGVVPQFDNLDLEF-TVRENL 135
Query: 301 ILLGKEDASMDRVIEAAKAANAHSFVE--GLPDGYQTQVGEGGTQLSGGQKQRIAIARAV 358
++ G+ R IEA S +E L +V + LSGG K+R+ +ARA+
Sbjct: 136 LVFGRYFGMSTREIEAVIP----SLLEFARLESKADARV----SDLSGGMKRRLTLARAL 187
Query: 359 LRNPKILLLDEATSALDAES-ELIVQRALEKIMSNRTTIVVAHRLSTV-RDVDTIMVLKN 416
+ +P++L+LDE T+ LD + LI +R + +T ++ H + R D + VL+
Sbjct: 188 INDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLEA 247
Query: 417 GQVVESGTHVDLISKGGEYAALVNLQSSEHLSNPSSICYSGSSRYSSFRDFPSSRRYDVE 476
G+ + G LI EH+ Y G S P +RR +V
Sbjct: 248 GRKIAEGRPHALI--------------DEHIGCQVIEIYGGDPHELSSLVKPYARRIEVS 293
Query: 477 FES 479
E+
Sbjct: 294 GET 296
|
Length = 340 |
| >gnl|CDD|226637 COG4167, SapF, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 87.2 bits (216), Expect = 9e-19
Identities = 69/257 (26%), Positives = 133/257 (51%), Gaps = 32/257 (12%)
Query: 835 IELRNVS--FKYPV----RPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYD 888
+E+RN+S F+Y R + + ++ + G++LA++G++GSGKST+ ++ +
Sbjct: 5 LEVRNLSKTFRYRTGLFRRQTVEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIE 64
Query: 889 PISGTVLIDGYDIRTLNLRSLRRKIGLVQQEPALFSTTIYENIKYG---------NEDAS 939
P SG +LI+ + + + ++I ++ Q+P +T++ ++ G N D
Sbjct: 65 PTSGEILINDHPLHFGDYSFRSKRIRMIFQDP---NTSLNPRLRIGQILDFPLRLNTDLE 121
Query: 940 EIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDE 999
+ K + + +P+ H L+ GQKQRVA+ARA++ P I++ DE
Sbjct: 122 PEQRRK--QIFETLRMVGLLPD----HANYYPHMLAPGQKQRVALARALILRPKIIIADE 175
Query: 1000 ATSALDTASE----NLIQEALDKLMEGRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGS 1054
A ++LD + NL+ E +K G + I V + I++ +D++ V+ +G+V E GS
Sbjct: 176 ALASLDMSMRSQLINLMLELQEKQ--GISYIYVTQHIGMIKHISDQVLVMHEGEVVERGS 233
Query: 1055 -HEQLLRKENGIYKQLI 1070
+ L + + K+LI
Sbjct: 234 TADVLASPLHELTKRLI 250
|
Length = 267 |
| >gnl|CDD|182893 PRK11000, PRK11000, maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 88.5 bits (220), Expect = 1e-18
Identities = 67/216 (31%), Positives = 107/216 (49%), Gaps = 27/216 (12%)
Query: 225 NLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMG 284
++N + G+ FVGPSG GKST++ M+ L + TSG + + + + +G
Sbjct: 21 DINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPA--ERGVG 78
Query: 285 LVSQEPALFA-TSIANNI-----LLGKEDASMD-RVIEAAKAANAHSFVEGLPDGYQTQV 337
+V Q AL+ S+A N+ L G + ++ RV + A+ ++ P
Sbjct: 79 MVFQSYALYPHLSVAENMSFGLKLAGAKKEEINQRVNQVAEVLQLAHLLDRKPKA----- 133
Query: 338 GEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALE--KIMS--NR 393
LSGGQ+QR+AI R ++ P + LLDE S LDA L VQ +E ++ R
Sbjct: 134 ------LSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDA--ALRVQMRIEISRLHKRLGR 185
Query: 394 TTIVVAH-RLSTVRDVDTIMVLKNGQVVESGTHVDL 428
T I V H ++ + D I+VL G+V + G ++L
Sbjct: 186 TMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLEL 221
|
Length = 369 |
| >gnl|CDD|237451 PRK13631, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 88.0 bits (218), Expect = 1e-18
Identities = 60/209 (28%), Positives = 101/209 (48%), Gaps = 28/209 (13%)
Query: 868 VVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDI----------------RTLNLRSLRR 911
++G SGSGKST+++ GT+ + I + N + LRR
Sbjct: 57 IIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNHELITNPYSKKIKNFKELRR 116
Query: 912 KIGLVQQEP--ALFSTTIYENIKYG--NEDASEIELMKATKAANAHGFISRMPEGYQSHV 967
++ +V Q P LF TI ++I +G + E K K ++++M S++
Sbjct: 117 RVSMVFQFPEYQLFKDTIEKDIMFGPVALGVKKSEAKKLAKF-----YLNKMGLDD-SYL 170
Query: 968 GDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASEN-LIQEALDKLMEGRTTI 1026
LSGGQK+RVAIA + P IL+ DE T+ LD E+ ++Q LD +T
Sbjct: 171 ERSPFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVF 230
Query: 1027 MVAHRLSTIRN-ADKIAVLQQGKVAEIGS 1054
++ H + + AD++ V+ +GK+ + G+
Sbjct: 231 VITHTMEHVLEVADEVIVMDKGKILKTGT 259
|
Length = 320 |
| >gnl|CDD|226929 COG4559, COG4559, ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 87.0 bits (216), Expect = 1e-18
Identities = 59/225 (26%), Positives = 108/225 (48%), Gaps = 26/225 (11%)
Query: 222 VFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLRE 281
+ + ++ + G+ A +GP+G+GKST++ + P SG++ L+G L S + L
Sbjct: 16 LLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEELAR 75
Query: 282 QMGLVSQEPAL-FATSIANNILLGK-------EDASMDRVIEAAKAANAHSFVEGLPDGY 333
++ Q +L F ++ + +G+ E +R+ A AA S + G Y
Sbjct: 76 HRAVLPQNSSLAFPFTVQEVVQMGRIPHRSGREPEEDERIAAQALAATDLSGLAG--RDY 133
Query: 334 QTQVGEGGTQLSGGQKQRIAIAR------AVLRNPKILLLDEATSALDAESELIVQRALE 387
+T LSGG++QR+ +AR + + + L LDE TSALD + R
Sbjct: 134 RT--------LSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLAR 185
Query: 388 KIMSNR-TTIVVAHRLS-TVRDVDTIMVLKNGQVVESGTHVDLIS 430
++ + V H L+ + D I++L G+V+ SG+ D+++
Sbjct: 186 QLAREGGAVLAVLHDLNLAAQYADRIVLLHQGRVIASGSPQDVLT 230
|
Length = 259 |
| >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Score = 90.2 bits (224), Expect = 1e-18
Identities = 63/276 (22%), Positives = 130/276 (47%), Gaps = 66/276 (23%)
Query: 835 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLV--MRFYDPISG 892
IE++N++ K+ + +N++ + G L ++G+SG+GKS ++ ++ M Y+P SG
Sbjct: 1 IEVKNLTKKFD---GKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSG 57
Query: 893 TVL---------------------------------IDGYDIRTLNLRSLRRKIG-LVQQ 918
++ +D +++ R +R++I ++Q+
Sbjct: 58 RIIYHVALCEKCGYVERPSKVGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQR 117
Query: 919 EPALF-STTIYEN-------IKYGNEDASE--IELMKATKAANAHGFISRMPEGYQSHVG 968
AL+ T+ +N I Y ++A ++L++ + ++ I+R
Sbjct: 118 TFALYGDDTVLDNVLEALEEIGYEGKEAVGRAVDLIEMVQLSHRITHIAR---------- 167
Query: 969 DRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLM--EGRTTI 1026
LSGG+KQRV +AR + K P + L DE T LD + L+ AL++ + G + +
Sbjct: 168 ----DLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMV 223
Query: 1027 MVAHRLSTIRN-ADKIAVLQQGKVAEIGSHEQLLRK 1061
+ +H I + +DK L+ G++ E G+ ++++
Sbjct: 224 LTSHWPEVIEDLSDKAIWLENGEIKEEGTPDEVVAV 259
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520 |
| >gnl|CDD|130355 TIGR01288, nodI, ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Score = 87.7 bits (217), Expect = 1e-18
Identities = 67/225 (29%), Positives = 112/225 (49%), Gaps = 21/225 (9%)
Query: 835 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTV 894
I+L VS Y D + +L+ ++ G ++G +G+GKST+ +++ P G +
Sbjct: 5 IDLVGVSKSYG---DKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKI 61
Query: 895 LIDGYDIRTLNLRSLRRKIGLVQQEPAL-FSTTIYENI----KYGNEDASEIELMKATKA 949
+ G + + R R IG+V Q L T+ EN+ +Y EIE + +
Sbjct: 62 TVLGEPVPS-RARLARVAIGVVPQFDNLDPEFTVRENLLVFGRYFGMSTREIEAVIPSLL 120
Query: 950 ANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASE 1009
A +S R LSGG K+R+ +ARA++ +P +L+LDE T+ LD +
Sbjct: 121 EFAR---------LESKADVRVALLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHAR 171
Query: 1010 NLIQEALDKLM-EGRTTIMVAHRLSTI-RNADKIAVLQQG-KVAE 1051
+LI E L L+ G+T ++ H + R D++ VL+ G K+AE
Sbjct: 172 HLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLESGRKIAE 216
|
This protein is required for normal nodulation by nitrogen-fixing root nodule bacteria such as Mesorhizobium loti. It is a member of the family of ABC transporter ATP binding proteins and works with NodJ to export a nodulation signal molecule. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans [Cellular processes, Other, Transport and binding proteins, Other]. Length = 303 |
| >gnl|CDD|226952 COG4586, COG4586, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 87.8 bits (218), Expect = 1e-18
Identities = 65/275 (23%), Positives = 117/275 (42%), Gaps = 35/275 (12%)
Query: 225 NLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLRE--- 281
+++F + G+ F+G +G+GKST + M+ L PTSGK+ ++G D + ++LR
Sbjct: 42 DISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGKDPFRRREEYLRSIGL 101
Query: 282 QMGLVSQEPALFATSIANNILLGKEDASMDRVI----EAAKAANAHSFVE--GLPDGYQT 335
MG Q L + + ++I + A E L +
Sbjct: 102 VMGQKLQ------LWWDLPAL---DSLEVLKLIYEIPDDEFAERLDFLTEILDLEGFLKW 152
Query: 336 QVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNR-T 394
V +LS GQ+ R +A A+L PK+L LDE T LD ++ ++ L++ R
Sbjct: 153 PV----RKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQANIREFLKEYNEERQA 208
Query: 395 TIVVA-HRLSTVRDV-DTIMVLKNGQVVESGTHVDLISKGGEYAALVNLQSSEHLSNPSS 452
T+++ H + + D ++++ GQ+V GT L + G Y S L S
Sbjct: 209 TVLLTTHIFDDIATLCDRVLLIDQGQLVFDGTLAQLQEQFGPYKEF-----SVELKQAKS 263
Query: 453 ICYSGSSRYSSFRDFPSSRRYDVEFESSKRRELQS 487
+ S+ + D +++ + S+
Sbjct: 264 L-----SQLALLGDVTIEEGLNIKNDVSREESADI 293
|
Length = 325 |
| >gnl|CDD|130262 TIGR01194, cyc_pep_trnsptr, cyclic peptide transporter | Back alignment and domain information |
|---|
Score = 90.4 bits (224), Expect = 1e-18
Identities = 109/521 (20%), Positives = 194/521 (37%), Gaps = 53/521 (10%)
Query: 555 VALIFVGLAVVTIPVYLLQHYFYTLMGEHLTARVRLSMFSAILSNEIGWFDLDENNTGLL 614
F GL ++ + + F G H+ A +R+++ IL I ++D L
Sbjct: 55 SLFSFGGLCLLALLFRIGADIFPAYAGMHIIANLRIALCEKILGAPIE--EIDRRGAHNL 112
Query: 615 ISTLAADATLVRSALADRLSIIVQNVALTVTAFVIAFI--LSWRLAAVVAASLPLLIGAF 672
I L D + + L +AL + F IA++ LS + A+ +++ +IG
Sbjct: 113 IPLLTHDIDQINAFL---FIFPPIAIALAIFFFCIAYLAYLSVPMFAITISAI--IIGTA 167
Query: 673 VAEQLFLKGFGGDYNRAYSRATSVAREAIANIRTVAAYGIEKRISIQFASELSQPNKQAL 732
F+ GF + A + A I + FA Q + +
Sbjct: 168 AQLLAFMGGFKFFH-AARDEEDAFNEHTHAIAFGAKELKIHGIRRLSFAHGAIQESANNI 226
Query: 733 LRGHIS---------GFGYGVSQLLSLCSYALGLWYASVLIKQKGSNFGDIMKSFMVLII 783
HI FG + LL C+ +AS + I + L+
Sbjct: 227 ADLHIIEILIFIAAENFGQLLFFLLIGCALFAAAMFAS-------IDAAAISAFVLALLY 279
Query: 784 TALAVAETLALAPDIVKGSQALGPVFGILYRKTAIQPDDPASKEVTEIK-------GNIE 836
+ ++ P + + A + R +P+ S + +IE
Sbjct: 280 IKGPLEMLVSALPILAQAQIACQRLADFGERFNEPEPELELSDADNVLLLAHDKSVDSIE 339
Query: 837 LRNVSFKYPVRPDITIFE--NLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTV 894
L++V F ++L+++ G + +VG++G GKST+ L Y P G +
Sbjct: 340 LKDVHMNPKAPEGSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQEGEI 399
Query: 895 LIDGYDIRTLNLRSLRRKIGLVQQEPALFSTTIYENIKYGNEDASEIELMKATKAANAHG 954
L+DG + + R + + LF I + + NA
Sbjct: 400 LLDGAAVSADSRDDYRDLFSAIFADFHLFDDLIGPDEG------------EHASLDNAQQ 447
Query: 955 FISRMPEGYQSHVGDRG----VQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASEN 1010
++ R+ + + D G LS GQ++R+A+ A L++ ILL DE + D A +
Sbjct: 448 YLQRLEIADKVKIEDGGFSTTTALSTGQQKRLALICAWLEDRPILLFDEWAADQDPAFKR 507
Query: 1011 LIQEAL--DKLMEGRTTIMVAHRLSTIRNADKIAVLQQGKV 1049
E L D +G+T I+++H AD+I L G +
Sbjct: 508 FFYEELLPDLKRQGKTIIIISHDDQYFELADQIIKLAAGCI 548
|
This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake [Transport and binding proteins, Amino acids, peptides and amines, Transport and binding proteins, Other]. Length = 555 |
| >gnl|CDD|226646 COG4178, COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 90.8 bits (226), Expect = 1e-18
Identities = 58/200 (29%), Positives = 89/200 (44%), Gaps = 22/200 (11%)
Query: 835 IELRNVSFKYPVRPDITIF-ENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGT 893
I L N+S + PD LN +V G L + G+SG+GK++++ + + SG
Sbjct: 393 ITLENLSLR---TPDGQTLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWGSGR 449
Query: 894 VLIDGYDIRTLNLRSLRRKIGLVQQEPALFSTTIYENIKY--GNEDASEIELMKATKAAN 951
+ + L + Q P L T+ E + Y D S+ EL+
Sbjct: 450 I------SMPADSALL-----FLPQRPYLPQGTLREALCYPNAAPDFSDAELVAVLHKVG 498
Query: 952 AHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENL 1011
R+ E LSGG++QR+A AR +L P + LDEATSALD +E+
Sbjct: 499 LGDLAERLDE-----EDRWDRVLSGGEQQRLAFARLLLHKPKWVFLDEATSALDEETEDR 553
Query: 1012 IQEALDKLMEGRTTIMVAHR 1031
+ + L + + T I V HR
Sbjct: 554 LYQLLKEELPDATVISVGHR 573
|
Length = 604 |
| >gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 90.7 bits (225), Expect = 1e-18
Identities = 72/256 (28%), Positives = 130/256 (50%), Gaps = 26/256 (10%)
Query: 819 QPDDPASKEVTEIKGN--IELRNVSFKYPVRP--------DITIFENLNLKVSAGRSLAV 868
+P ++ T + G +++RN+ ++P+R ++ E ++ + G +L++
Sbjct: 296 AKQEPPIEQDTVVDGEPILQVRNLVTRFPLRSGLLNRVTREVHAVEKVSFDLWPGETLSL 355
Query: 869 VGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLN---LRSLRRKIGLVQQEPALFST 925
VG+SGSGKST ++R + G ++ +G I TL+ L++LRR I + Q+P S
Sbjct: 356 VGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTLSPGKLQALRRDIQFIFQDPYA-SL 414
Query: 926 TIYENIKYGNEDASEIELMKATKAANAH--GFISRM---PEGYQSHVGDRGVQLSGGQKQ 980
+ + + + + KAA A + R+ PE H + SGGQ+Q
Sbjct: 415 DPRQTVGDSIMEPLRVHGLLPGKAAAARVAWLLERVGLLPE----HAWRYPHEFSGGQRQ 470
Query: 981 RVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLME--GRTTIMVAHRLSTI-RN 1037
R+ IARA+ NP +++ DEA SALD + I L L G + ++H ++ + R
Sbjct: 471 RICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIAYLFISHDMAVVERI 530
Query: 1038 ADKIAVLQQGKVAEIG 1053
+ ++AV+ G++ EIG
Sbjct: 531 SHRVAVMYLGQIVEIG 546
|
Length = 623 |
| >gnl|CDD|182561 PRK10575, PRK10575, iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 85.6 bits (212), Expect = 3e-18
Identities = 70/234 (29%), Positives = 110/234 (47%), Gaps = 27/234 (11%)
Query: 210 EVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGH 269
V F P R + L+ + AGK +G +GSGKST++ M+ R P+ G+ILLD
Sbjct: 16 NVSFRVPGR--TLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQ 73
Query: 270 DLKSLQLK-WLREQMGLVSQEPALFATSIANNILLGK----------EDASMDRVIEAAK 318
L+S K + R+ L Q PA ++ + +G+ A ++V EA
Sbjct: 74 PLESWSSKAFARKVAYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAIS 133
Query: 319 AANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAES 378
L D LSGG++QR IA V ++ + LLLDE TSALD
Sbjct: 134 LVGLKPLAHRLVD-----------SLSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAH 182
Query: 379 ELIVQRALEKIMSNR--TTIVVAHRLS-TVRDVDTIMVLKNGQVVESGTHVDLI 429
++ V + ++ R T I V H ++ R D ++ L+ G+++ GT +L+
Sbjct: 183 QVDVLALVHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGEMIAQGTPAELM 236
|
Length = 265 |
| >gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 89.5 bits (222), Expect = 3e-18
Identities = 72/253 (28%), Positives = 115/253 (45%), Gaps = 28/253 (11%)
Query: 839 NVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDG 898
N++F + I NL+ + G +LA+VG+SGSGKS +MR + G V D
Sbjct: 19 NIAFMQE-QQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDK 77
Query: 899 YDIRTLN-------------LRSLR-RKIGLVQQEPALFSTTIYENIKYGNEDASEIELM 944
+R + +R +R + ++ QEP T++ G + A I L
Sbjct: 78 MLLRRRSRQVIELSEQSAAQMRHVRGADMAMIFQEPM---TSLNPVFTVGEQIAESIRLH 134
Query: 945 KATKAANAHGFISRM------PEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLD 998
+ A RM PE Q+ + QLSGG +QRV IA A+ P++L+ D
Sbjct: 135 QGASREEAMVEAKRMLDQVRIPEA-QTILSRYPHQLSGGMRQRVMIAMALSCRPAVLIAD 193
Query: 999 EATSALDTASENLIQEALDKLMEGRT--TIMVAHRLSTIRN-ADKIAVLQQGKVAEIGSH 1055
E T+ALD + I + + L + + I + H + + AD++ V+ QG+ E GS
Sbjct: 194 EPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMGVVAEIADRVLVMYQGEAVETGSV 253
Query: 1056 EQLLRKENGIYKQ 1068
EQ+ Y +
Sbjct: 254 EQIFHAPQHPYTR 266
|
Length = 623 |
| >gnl|CDD|182993 PRK11144, modC, molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 87.2 bits (217), Expect = 3e-18
Identities = 66/210 (31%), Positives = 104/210 (49%), Gaps = 41/210 (19%)
Query: 867 AVVGQSGSGKSTVISLVMRFYDP------ISGTVLIDGYDIRTLNLRSLRRKIGLVQQEP 920
A+ G+SG+GK+++I+ + P ++G VL D + + L +R+IG V Q+
Sbjct: 28 AIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAE--KGICLPPEKRRIGYVFQDA 85
Query: 921 ALFS-TTIYENIKYGNEDASEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQ------ 973
LF + N++YG M + M + V G++
Sbjct: 86 RLFPHYKVRGNLRYG---------MAKS-----------MVAQFDKIVALLGIEPLLDRY 125
Query: 974 ---LSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLM-EGRTTIM-V 1028
LSGG+KQRVAI RA+L P +LL+DE ++LD + + L++L E I+ V
Sbjct: 126 PGSLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKRELLPYLERLAREINIPILYV 185
Query: 1029 AHRLSTI-RNADKIAVLQQGKVAEIGSHEQ 1057
+H L I R AD++ VL+QGKV G E+
Sbjct: 186 SHSLDEILRLADRVVVLEQGKVKAFGPLEE 215
|
Length = 352 |
| >gnl|CDD|185067 PRK15112, PRK15112, antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Score = 85.6 bits (212), Expect = 3e-18
Identities = 68/225 (30%), Positives = 117/225 (52%), Gaps = 33/225 (14%)
Query: 224 ENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQM 283
+ L+F++ G+T A +G +GSGKST+ M+ + EPTSG++L+D H L + +++
Sbjct: 30 KPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDYSYRSQRI 89
Query: 284 GLVSQEPALFATSI-----ANNIL-----LGKEDASMDRVIEAAKAANAHSFVEGL-PD- 331
++ Q+P +TS+ + IL L + R K GL PD
Sbjct: 90 RMIFQDP---STSLNPRQRISQILDFPLRLNTDLEPEQR----EKQIIETLRQVGLLPDH 142
Query: 332 -GYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDA--ESELI--VQRAL 386
Y + L+ GQKQR+ +ARA++ PK+++ DEA ++LD S+LI +
Sbjct: 143 ASYYPHM------LAPGQKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQ 196
Query: 387 EKIMSNRTTIVVAHRLSTVRDV-DTIMVLKNGQVVESGTHVDLIS 430
EK + I V L ++ + D ++V+ G+VVE G+ D+++
Sbjct: 197 EK--QGISYIYVTQHLGMMKHISDQVLVMHQGEVVERGSTADVLA 239
|
Length = 267 |
| >gnl|CDD|182817 PRK10895, PRK10895, lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 84.9 bits (210), Expect = 3e-18
Identities = 61/217 (28%), Positives = 116/217 (53%), Gaps = 10/217 (4%)
Query: 851 TIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRS-L 909
+ E+++L V++G + ++G +G+GK+T +V+ +G ++ID DI L L +
Sbjct: 17 RVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARA 76
Query: 910 RRKIGLVQQEPALFST-TIYENIKYGNEDASEIELMKATKAANAHGFISRMPEGYQSHVG 968
RR IG + QE ++F ++Y+N+ + ++ + AN M E + H+
Sbjct: 77 RRGIGYLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQREDRAN-----ELMEEFHIEHLR 131
Query: 969 DR-GVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLME-GRTTI 1026
D G LSGG+++RV IARA+ NP +LLDE + +D S I+ ++ L + G +
Sbjct: 132 DSMGQSLSGGERRRVEIARALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVL 191
Query: 1027 MVAHRL-STIRNADKIAVLQQGKVAEIGSHEQLLRKE 1062
+ H + T+ ++ ++ QG + G+ ++L+ E
Sbjct: 192 ITDHNVRETLAVCERAYIVSQGHLIAHGTPTEILQDE 228
|
Length = 241 |
| >gnl|CDD|182528 PRK10535, PRK10535, macrolide transporter ATP-binding /permease protein; Provisional | Back alignment and domain information |
|---|
Score = 89.4 bits (222), Expect = 4e-18
Identities = 70/246 (28%), Positives = 124/246 (50%), Gaps = 14/246 (5%)
Query: 202 LAGQIEFSEVCFAYPS--RPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEP 259
+ +E ++ +YPS V + ++ + AG+ A VG SGSGKST+++++ L +P
Sbjct: 1 MTALLELKDIRRSYPSGEEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKP 60
Query: 260 TSGKILLDGHDLKSL---QLKWLR-EQMGLVSQEPALFA-TSIANNILLGKEDASMDRVI 314
TSG + G D+ +L L LR E G + Q L + + A N+ + A ++R
Sbjct: 61 TSGTYRVAGQDVATLDADALAQLRREHFGFIFQRYHLLSHLTAAQNVEVPAVYAGLER-- 118
Query: 315 EAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSAL 374
+ A ++ L G + +V +QLSGGQ+QR++IARA++ +++L DE T AL
Sbjct: 119 -KQRLLRAQELLQRL--GLEDRVEYQPSQLSGGQQQRVSIARALMNGGQVILADEPTGAL 175
Query: 375 DAESELIVQRALEKIMSN-RTTIVVAHRLSTVRDVDTIMVLKNGQVV-ESGTHVDLISKG 432
D+ S V L ++ T I+V H + ++ +++G++V + G
Sbjct: 176 DSHSGEEVMAILHQLRDRGHTVIIVTHDPQVAAQAERVIEIRDGEIVRNPPAQEKVNVAG 235
Query: 433 GEYAAL 438
G +
Sbjct: 236 GTEPVV 241
|
Length = 648 |
| >gnl|CDD|130252 TIGR01184, ntrCD, nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Score = 84.4 bits (209), Expect = 4e-18
Identities = 63/196 (32%), Positives = 102/196 (52%), Gaps = 21/196 (10%)
Query: 224 ENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQM 283
+ +N ++ G+ + +G SG GKST+++++ L +PTSG ++L+G + ++M
Sbjct: 2 KGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPG----PDRM 57
Query: 284 GLVSQEPALFA-TSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPD--GYQTQVGEG 340
+V Q +L ++ NI L ++DRV+ + + VE G +
Sbjct: 58 -VVFQNYSLLPWLTVRENIAL-----AVDRVLPDLSKSERRAIVEEHIALVGLTEAADKR 111
Query: 341 GTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNR--TTIVV 398
QLSGG KQR+AIARA+ PK+LLLDE ALDA + +Q L +I T ++V
Sbjct: 112 PGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQIWEEHRVTVLMV 171
Query: 399 AHRLSTVRDVDTIMVL 414
H DVD ++L
Sbjct: 172 TH------DVDEALLL 181
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase [Transport and binding proteins, Anions, Transport and binding proteins, Other]. Length = 230 |
| >gnl|CDD|224060 COG1137, YhbG, ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 84.6 bits (210), Expect = 4e-18
Identities = 53/165 (32%), Positives = 88/165 (53%), Gaps = 11/165 (6%)
Query: 215 YPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSL 274
Y R V +++ V++G+ +GP+G+GK+T M+ L P SGKILLD D+ L
Sbjct: 14 YKKRK--VVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKL 71
Query: 275 QLKWLREQMGL--VSQEPALF-ATSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPD 331
+ R ++G+ + QE ++F ++ +NI+ E D KA L +
Sbjct: 72 PM-HKRARLGIGYLPQEASIFRKLTVEDNIMAVLEIREKDL----KKAERKEELDALLEE 126
Query: 332 GYQTQVGEG-GTQLSGGQKQRIAIARAVLRNPKILLLDEATSALD 375
+ T + + LSGG+++R+ IARA+ NPK +LLDE + +D
Sbjct: 127 FHITHLRDSKAYSLSGGERRRVEIARALAANPKFILLDEPFAGVD 171
|
Length = 243 |
| >gnl|CDD|236689 PRK10419, nikE, nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Score = 85.1 bits (211), Expect = 4e-18
Identities = 69/234 (29%), Positives = 110/234 (47%), Gaps = 28/234 (11%)
Query: 838 RNVSFKYP------VRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPIS 891
+S Y T+ N++L + +G ++A++G+SG GKST+ L++ P
Sbjct: 7 SGLSHHYAHGGLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQ 66
Query: 892 GTVLIDGYDIRTLN---LRSLRRKIGLV-QQEPALFS--TTIYENIKYGNEDASE----- 940
G V G + LN ++ RR I +V Q + + T+ E I E
Sbjct: 67 GNVSWRGEPLAKLNRAQRKAFRRDIQMVFQDSISAVNPRKTVREII-------REPLRHL 119
Query: 941 IELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEA 1000
+ L KA + A A + R + S + R QLSGGQ QRV +ARA+ P +L+LDEA
Sbjct: 120 LSLDKAERLARASEML-RAVDLDDSVLDKRPPQLSGGQLQRVCLARALAVEPKLLILDEA 178
Query: 1001 TSALDTASENLIQEALDKLMEGRTT--IMVAHRLSTI-RNADKIAVLQQGKVAE 1051
S LD + + L KL + T + + H L + R ++ V+ G++ E
Sbjct: 179 VSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLRLVERFCQRVMVMDNGQIVE 232
|
Length = 268 |
| >gnl|CDD|182829 PRK10908, PRK10908, cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Score = 84.2 bits (208), Expect = 4e-18
Identities = 65/198 (32%), Positives = 99/198 (50%), Gaps = 31/198 (15%)
Query: 868 VVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRS---LRRKIGLV-QQEPALF 923
+ G SG+GKST++ L+ P +G + G+DI L R LRR+IG++ Q L
Sbjct: 33 LTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLRRQIGMIFQDHHLLM 92
Query: 924 STTIYENIKYGNEDASEIELMKATKAANAHGFISRMPEGYQSHVG--DRG----VQLSGG 977
T+Y+N+ I L+ A + + I R VG D+ +QLSGG
Sbjct: 93 DRTVYDNVA--------IPLIIAGASGDD---IRRRVSAALDKVGLLDKAKNFPIQLSGG 141
Query: 978 QKQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLME-----GRTTIMVAHRL 1032
++QRV IARA++ P++LL DE T LD A + E + +L E G T +M H +
Sbjct: 142 EQQRVGIARAVVNKPAVLLADEPTGNLDDA----LSEGILRLFEEFNRVGVTVLMATHDI 197
Query: 1033 STI-RNADKIAVLQQGKV 1049
I R + ++ L G +
Sbjct: 198 GLISRRSYRMLTLSDGHL 215
|
Length = 222 |
| >gnl|CDD|182829 PRK10908, PRK10908, cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Score = 84.2 bits (208), Expect = 4e-18
Identities = 60/199 (30%), Positives = 97/199 (48%), Gaps = 16/199 (8%)
Query: 206 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKIL 265
I F V AY + + F + G+ G SG+GKST++ ++ + P++GKI
Sbjct: 2 IRFEHVSKAYLG-GRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIW 60
Query: 266 LDGHD---LKSLQLKWLREQMGLVSQEPALFAT-SIANNILLGKEDASMDRVIEAAKAAN 321
GHD LK+ ++ +LR Q+G++ Q+ L ++ +N+ ++ +I A +
Sbjct: 61 FSGHDITRLKNREVPFLRRQIGMIFQDHHLLMDRTVYDNV-------AIPLIIAGASGDD 113
Query: 322 AHSFVEGLPD--GYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESE 379
V D G + QLSGG++QR+ IARAV+ P +LL DE T LD
Sbjct: 114 IRRRVSAALDKVGLLDKAKNFPIQLSGGEQQRVGIARAVVNKPAVLLADEPTGNLDDALS 173
Query: 380 LIVQRALEKIMSNRTTIVV 398
+ R E+ NR + V
Sbjct: 174 EGILRLFEEF--NRVGVTV 190
|
Length = 222 |
| >gnl|CDD|188208 TIGR02323, CP_lyasePhnK, phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Score = 84.9 bits (210), Expect = 4e-18
Identities = 65/238 (27%), Positives = 106/238 (44%), Gaps = 28/238 (11%)
Query: 853 FENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNL------ 906
+++ + G L +VG+SGSGKST++ + P GT L L
Sbjct: 19 CRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEA 78
Query: 907 ---RSLRRKIGLVQQEPALFSTTIYENIKYGNEDASEI-ELMKATKA-------ANAHGF 955
R +R + G V Q P + ++ + I E + A A A A +
Sbjct: 79 ERRRLMRTEWGFVHQNPR-------DGLRMRVSAGANIGERLMAIGARHYGNIRATAQDW 131
Query: 956 ISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEA 1015
+ + E + + D SGG +QR+ IAR ++ P ++ +DE T LD + + + +
Sbjct: 132 LEEV-EIDPTRIDDLPRAFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDL 190
Query: 1016 LDKLME--GRTTIMVAHRLSTIR-NADKIAVLQQGKVAEIGSHEQLLRKENGIYKQLI 1070
L L+ G I+V H L R A ++ V+QQG+V E G +Q+L Y QL+
Sbjct: 191 LRGLVRDLGLAVIIVTHDLGVARLLAQRLLVMQQGRVVESGLTDQVLDDPQHPYTQLL 248
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se [Central intermediary metabolism, Phosphorus compounds]. Length = 253 |
| >gnl|CDD|237420 PRK13537, PRK13537, nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Score = 86.0 bits (213), Expect = 4e-18
Identities = 66/241 (27%), Positives = 124/241 (51%), Gaps = 28/241 (11%)
Query: 835 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTV 894
I+ RNV +Y D + + L+ V G ++G +G+GK+T + +++ P +G++
Sbjct: 8 IDFRNVEKRYG---DKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSI 64
Query: 895 LIDGYDIRTLNLRSLRRKIGLVQQ----EPALFSTTIYENI----KYGNEDASEIELMKA 946
+ G + + R R+++G+V Q +P T+ EN+ +Y A+ +
Sbjct: 65 SLCGEPVPS-RARHARQRVGVVPQFDNLDPDF---TVRENLLVFGRYFGLSAAAARALVP 120
Query: 947 TKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDT 1006
A ++ + VG+ LSGG K+R+ +ARA++ +P +L+LDE T+ LD
Sbjct: 121 PLLEFA-----KLENKADAKVGE----LSGGMKRRLTLARALVNDPDVLVLDEPTTGLDP 171
Query: 1007 ASENLIQEALDKLM-EGRTTIMVAHRLSTI-RNADKIAVLQQG-KVAEIGSHEQLLRKEN 1063
+ +L+ E L L+ G+T ++ H + R D++ V+++G K+AE H L+ E
Sbjct: 172 QARHLMWERLRSLLARGKTILLTTHFMEEAERLCDRLCVIEEGRKIAEGAPHA-LIESEI 230
Query: 1064 G 1064
G
Sbjct: 231 G 231
|
Length = 306 |
| >gnl|CDD|181888 PRK09473, oppD, oligopeptide transporter ATP-binding component; Provisional | Back alignment and domain information |
|---|
Score = 86.3 bits (214), Expect = 4e-18
Identities = 71/241 (29%), Positives = 111/241 (46%), Gaps = 31/241 (12%)
Query: 839 NVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDP---ISGTVL 895
V+F P D+T +LN + AG +L +VG+SGSGKS +M I G+
Sbjct: 19 RVTFSTP-DGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSAT 77
Query: 896 IDGYDIRTLNLRSLRR----KIGLVQQEPALFSTTIYENIKYGNEDASEIELMKATKAAN 951
+G +I L + L + +I ++ Q+P T++ ++ G + + L K A
Sbjct: 78 FNGREILNLPEKELNKLRAEQISMIFQDPM---TSLNPYMRVGEQLMEVLMLHKGMSKAE 134
Query: 952 AHGFISRM------PEGYQS-----HVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEA 1000
A RM PE + H + SGG +QRV IA A+L P +L+ DE
Sbjct: 135 AFEESVRMLDAVKMPEARKRMKMYPH------EFSGGMRQRVMIAMALLCRPKLLIADEP 188
Query: 1001 TSALDTASENLIQEALDKLMEGRTT--IMVAHRLSTIRN-ADKIAVLQQGKVAEIGSHEQ 1057
T+ALD + I L++L T IM+ H L + DK+ V+ G+ E G+
Sbjct: 189 TTALDVTVQAQIMTLLNELKREFNTAIIMITHDLGVVAGICDKVLVMYAGRTMEYGNARD 248
Query: 1058 L 1058
+
Sbjct: 249 V 249
|
Length = 330 |
| >gnl|CDD|183055 PRK11247, ssuB, aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 84.7 bits (210), Expect = 5e-18
Identities = 68/217 (31%), Positives = 110/217 (50%), Gaps = 23/217 (10%)
Query: 837 LRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLI 896
L VS +Y R T+ L+L + AG+ +AVVG+SG GKST++ L+ P +G +L
Sbjct: 15 LNAVSKRYGER---TVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLA 71
Query: 897 DGYDIRTLNLRSLRRKIGLVQQEPALFS-TTIYENIKYGNEDASEIELMKATKAANAHGF 955
T L R L+ Q+ L + +N+ G + ++A A
Sbjct: 72 G-----TAPLAEAREDTRLMFQDARLLPWKKVIDNVGLGLKGQWRDAALQALAAV----- 121
Query: 956 ISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEA 1015
G + LSGGQKQRVA+ARA++ P +LLLDE ALD + +Q+
Sbjct: 122 ------GLADRANEWPAALSGGQKQRVALARALIHRPGLLLLDEPLGALDALTRIEMQDL 175
Query: 1016 LDKLME--GRTTIMVAHRLS-TIRNADKIAVLQQGKV 1049
++ L + G T ++V H +S + AD++ ++++GK+
Sbjct: 176 IESLWQQHGFTVLLVTHDVSEAVAMADRVLLIEEGKI 212
|
Length = 257 |
| >gnl|CDD|237421 PRK13539, PRK13539, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 83.4 bits (207), Expect = 5e-18
Identities = 57/187 (30%), Positives = 92/187 (49%), Gaps = 30/187 (16%)
Query: 222 VFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLRE 281
+F L+F++ AG+ GP+GSGK+T++ ++ L P +G I LDG D + + E
Sbjct: 17 LFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGD---IDDPDVAE 73
Query: 282 QMGLVSQEPALFAT-SIANNI-----LLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQT 335
+ A+ ++A N+ LG E+ I AA A + + LP GY
Sbjct: 74 ACHYLGHRNAMKPALTVAENLEFWAAFLGGEELD----IAAALEAVGLAPLAHLPFGY-- 127
Query: 336 QVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMS---N 392
LS GQK+R+A+AR ++ N I +LDE T+ALDA + +++
Sbjct: 128 --------LSAGQKRRVALARLLVSNRPIWILDEPTAALDAAA----VALFAELIRAHLA 175
Query: 393 RTTIVVA 399
+ IV+A
Sbjct: 176 QGGIVIA 182
|
Length = 207 |
| >gnl|CDD|183244 PRK11629, lolD, lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 84.1 bits (208), Expect = 5e-18
Identities = 62/206 (30%), Positives = 112/206 (54%), Gaps = 14/206 (6%)
Query: 222 VFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSL----QLK 277
V N++FS+ G+ A VG SGSGKST++ ++ L PTSG ++ +G + L + +
Sbjct: 24 VLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAE 83
Query: 278 WLREQMGLVSQEPALFATSIANNILLGKEDASMDRVIEAAKAANAHS-FVEGLPD-GYQT 335
+++G + Q L A E+ +M +I K A +S +E L G +
Sbjct: 84 LRNQKLGFIYQFHHLLPDFTA------LENVAMPLLIGKKKPAEINSRALEMLAAVGLEH 137
Query: 336 QVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNRTT 395
+ ++LSGG++QR+AIARA++ NP+++L DE T LDA + + + L ++ + T
Sbjct: 138 RANHRPSELSGGERQRVAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGT 197
Query: 396 --IVVAHRLSTVRDVDTIMVLKNGQV 419
+VV H L + + + +++G++
Sbjct: 198 AFLVVTHDLQLAKRMSRQLEMRDGRL 223
|
Length = 233 |
| >gnl|CDD|226620 COG4136, COG4136, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 83.3 bits (206), Expect = 6e-18
Identities = 48/170 (28%), Positives = 77/170 (45%), Gaps = 30/170 (17%)
Query: 220 HMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPT---SGKILLDGHDLKSLQL 276
+ N+NF++ G+ +GPSG GKST++S + +G++ L+ L L
Sbjct: 15 SCLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPA 74
Query: 277 KWLREQMGLVSQEPALFAT-SIANNILLG---------KEDASMDRVIEAAKAANAHSFV 326
+ Q+G++ Q+ LF S+ N+L + +A+ + + H
Sbjct: 75 A--QRQIGILFQDALLFPHLSVGQNLLFALPATLKGNARRNAANAALERSGLDGAFHQD- 131
Query: 327 EGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDA 376
P LSGGQ+ R+A+ RA+L PK LLLDE S LD
Sbjct: 132 ---PA-----------TLSGGQRARVALLRALLAQPKALLLDEPFSRLDV 167
|
Length = 213 |
| >gnl|CDD|130355 TIGR01288, nodI, ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Score = 85.8 bits (212), Expect = 6e-18
Identities = 77/282 (27%), Positives = 129/282 (45%), Gaps = 35/282 (12%)
Query: 206 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKIL 265
I+ V +Y + +V +L+F++ G+ F +GP+G+GKSTI M+ + P GKI
Sbjct: 5 IDLVGVSKSYGDK--VVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKIT 62
Query: 266 LDGHDLKSLQLKWLREQMGLVSQ----EPALFATSIANNILLGKEDASMDRVIEAAKAAN 321
+ G + S + + R +G+V Q +P T N ++ G+ R IEA
Sbjct: 63 VLGEPVPS-RARLARVAIGVVPQFDNLDPEF--TVRENLLVFGRYFGMSTREIEAV---- 115
Query: 322 AHSFVE--GLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESE 379
S +E L +V LSGG K+R+ +ARA++ +P++L+LDE T+ LD +
Sbjct: 116 IPSLLEFARLESKADVRV----ALLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHAR 171
Query: 380 -LIVQRALEKIMSNRTTIVVAHRLSTV-RDVDTIMVLKNGQVVESGTHVDLISKGGEYAA 437
LI +R + +T ++ H + R D + VL++G+ + G LI
Sbjct: 172 HLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLESGRKIAEGRPHALI-------- 223
Query: 438 LVNLQSSEHLSNPSSICYSGSSRYSSFRDFPSSRRYDVEFES 479
E + Y G P +RR +V E+
Sbjct: 224 ------DEQIGCNVIEIYGGDPDELRELIRPYARRIEVSGET 259
|
This protein is required for normal nodulation by nitrogen-fixing root nodule bacteria such as Mesorhizobium loti. It is a member of the family of ABC transporter ATP binding proteins and works with NodJ to export a nodulation signal molecule. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans [Cellular processes, Other, Transport and binding proteins, Other]. Length = 303 |
| >gnl|CDD|237421 PRK13539, PRK13539, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 83.0 bits (206), Expect = 7e-18
Identities = 58/184 (31%), Positives = 93/184 (50%), Gaps = 27/184 (14%)
Query: 846 VRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLN 905
VR +F L+ ++AG +L + G +GSGK+T++ L+ P +GT+ +DG DI +
Sbjct: 11 VRGGRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDDPD 70
Query: 906 LRSLRRKIG-LVQQEPALFSTTIYENIK-----YGNEDASEIELMKATKAANAHGFISRM 959
+ +G +PAL T+ EN++ G E+ + A +A ++ +
Sbjct: 71 VAEACHYLGHRNAMKPAL---TVAENLEFWAAFLGGEELD---IAAALEAVGLAP-LAHL 123
Query: 960 PEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKL 1019
P GY LS GQK+RVA+AR ++ N I +LDE T+ALD A+ L E L
Sbjct: 124 PFGY----------LSAGQKRRVALARLLVSNRPIWILDEPTAALDAAAVALFAE----L 169
Query: 1020 MEGR 1023
+
Sbjct: 170 IRAH 173
|
Length = 207 |
| >gnl|CDD|182336 PRK10253, PRK10253, iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 84.7 bits (209), Expect = 7e-18
Identities = 69/229 (30%), Positives = 112/229 (48%), Gaps = 31/229 (13%)
Query: 851 TIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLR 910
T+ ENL +++ G A++G +G GKST++ + R P G V +DG I+ + +
Sbjct: 21 TVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVA 80
Query: 911 RKIGLVQQEPAL-FSTTIYENIKYG------------NEDASEIELMKATKAANAHGFIS 957
R+IGL+ Q T+ E + G ED + TKA A G
Sbjct: 81 RRIGLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAV-----TKAMQATGI-- 133
Query: 958 RMPEGYQSHVGDRGVQ-LSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEAL 1016
+H+ D+ V LSGGQ+QR IA + + +I+LLDE T+ LD + + + E L
Sbjct: 134 -------THLADQSVDTLSGGQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELL 186
Query: 1017 DKL--MEGRTTIMVAHRLS-TIRNADKIAVLQQGKVAEIGSHEQLLRKE 1062
+L +G T V H L+ R A + L++GK+ G+ ++++ E
Sbjct: 187 SELNREKGYTLAAVLHDLNQACRYASHLIALREGKIVAQGAPKEIVTAE 235
|
Length = 265 |
| >gnl|CDD|184210 PRK13651, PRK13651, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 85.1 bits (211), Expect = 8e-18
Identities = 67/260 (25%), Positives = 120/260 (46%), Gaps = 36/260 (13%)
Query: 835 IELRNVSFKY-PVRP-DITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISG 892
I+++N+ + P ++ +N++++++ G +A++GQ+GSGK+T I + P +G
Sbjct: 3 IKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTG 62
Query: 893 TVLIDGYDIRTL------------------------NLRSLRRKIGLVQQ--EPALFSTT 926
T+ D + ++ +RR++G+V Q E LF T
Sbjct: 63 TIEWIFKDEKNKKKTKEKEKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQT 122
Query: 927 IYENIKYGNEDASEIELMKATKAANAHGFISRMPEGYQSHVGDRG-VQLSGGQKQRVAIA 985
I ++I +G + +A K A + + + E Y R +LSGGQK+RVA+A
Sbjct: 123 IEKDIIFGPVSMG-VSKEEAKKRAAKYIELVGLDESYL----QRSPFELSGGQKRRVALA 177
Query: 986 RAILKNPSILLLDEATSALDTASENLIQEALDKL-MEGRTTIMVAHRL-STIRNADKIAV 1043
+ P L+ DE T+ LD I E D L +G+T I+V H L + + +
Sbjct: 178 GILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLDNVLEWTKRTIF 237
Query: 1044 LQQGKVAEIGSHEQLLRKEN 1063
+ GK+ + G +L
Sbjct: 238 FKDGKIIKDGDTYDILSDNK 257
|
Length = 305 |
| >gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Score = 89.3 bits (221), Expect = 8e-18
Identities = 71/232 (30%), Positives = 115/232 (49%), Gaps = 25/232 (10%)
Query: 847 RPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNL 906
R +IT +EN + A +G +G+GK+T +S++ P SGTVL+ G DI T NL
Sbjct: 948 RLNITFYEN--------QITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIET-NL 998
Query: 907 RSLRRKIGLVQQEPALFS-TTIYENIKYGNEDASEIELMKATKAANAHGFISRMPE--GY 963
++R+ +G+ Q LF T+ E+I + + +K A + M E G
Sbjct: 999 DAVRQSLGMCPQHNILFHHLTVAEHILFYAQ-------LKGRSWEEAQLEMEAMLEDTGL 1051
Query: 964 QSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLMEGR 1023
+ LSGG ++++++A A + + +++LDE TS +D S I + L K GR
Sbjct: 1052 HHKRNEEAQDLSGGMQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYRSGR 1111
Query: 1024 TTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGSHEQLLRKE---NGIYKQLIR 1071
T IM H + D+IA++ QG++ G+ L K G Y L+R
Sbjct: 1112 TIIMSTHHMDEADLLGDRIAIISQGRLYCSGT--PLFLKNCFGTGFYLTLVR 1161
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272 |
| >gnl|CDD|163452 TIGR03740, galliderm_ABC, gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 82.4 bits (204), Expect = 1e-17
Identities = 65/227 (28%), Positives = 109/227 (48%), Gaps = 37/227 (16%)
Query: 835 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTV 894
+E +N+S ++ + T N++L V ++G +G+GKST++ ++ P SG +
Sbjct: 1 LETKNLSKRFGKQ---TAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEI 57
Query: 895 LIDGYDIRTLNLRSLRRKIGLVQQEPALFST-TIYENIKY-----GNEDASEIELMKATK 948
+ DG+ R KIG + + P L+ T EN+K G D+ E++
Sbjct: 58 IFDGHPWT----RKDLHKIGSLIESPPLYENLTARENLKVHTTLLGLPDSRIDEVLNIVD 113
Query: 949 AANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTAS 1008
N + Q S G KQR+ IA A+L +P +L+LDE T+ LD
Sbjct: 114 LTN----TGKKKAK----------QFSLGMKQRLGIAIALLNHPKLLILDEPTNGLDPIG 159
Query: 1009 ENLIQEALDKLM-----EGRTTIMVAHRLSTIRN-ADKIAVLQQGKV 1049
IQE L +L+ +G T I+ +H LS ++ AD I ++ +G +
Sbjct: 160 ---IQE-LRELIRSFPEQGITVILSSHILSEVQQLADHIGIISEGVL 202
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. Length = 223 |
| >gnl|CDD|234199 TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Score = 82.6 bits (205), Expect = 1e-17
Identities = 58/219 (26%), Positives = 99/219 (45%), Gaps = 32/219 (14%)
Query: 221 MVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWL- 279
+ ++ V G+ +G +G GK+T++ + L SG I LDG D+ L
Sbjct: 14 HILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERA 73
Query: 280 REQMGLVSQEPALFAT-SIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGY---QT 335
R + V Q +F ++ N+L G A + + + + + +
Sbjct: 74 RAGIAYVPQGREIFPRLTVEENLLTGLA----------ALPRRSRKIPDEIYELFPVLKE 123
Query: 336 QVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELI-------VQRALEK 388
+G G LSGGQ+Q++AIARA++ PK+LLLDE T E I + R + +
Sbjct: 124 MLGRRGGDLSGGQQQQLAIARALVTRPKLLLLDEPT-------EGIQPSIIKDIGRVIRR 176
Query: 389 IMSNR--TTIVVAHRLSTVRDV-DTIMVLKNGQVVESGT 424
+ + ++V L R++ D V++ G+VV SG
Sbjct: 177 LRAEGGMAILLVEQYLDFARELADRYYVMERGRVVASGA 215
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 230 |
| >gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 87.6 bits (217), Expect = 1e-17
Identities = 79/270 (29%), Positives = 124/270 (45%), Gaps = 50/270 (18%)
Query: 186 SHSSERPGDDGITLPKLAGQIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSG 245
HS E D + + L + F + NL+FS+ G+T A VG SGSG
Sbjct: 2 PHSDELDARDVLAVENL-------NIAFMQEQQKIAAVRNLSFSLQRGETLAIVGESGSG 54
Query: 246 KSTIISMVQRLYEPTSGKILLDGHDL--KSLQLKWLREQ------------MGLVSQEP- 290
KS + RL E G + D L +S Q+ L EQ M ++ QEP
Sbjct: 55 KSVTALALMRLLEQAGGLVQCDKMLLRRRSRQVIELSEQSAAQMRHVRGADMAMIFQEPM 114
Query: 291 ----ALFAT--SIANNILL----GKEDASMD--RVIEAAKAANAHSFVEGLPDGYQTQVG 338
+F IA +I L +E+A ++ R+++ + A + + P
Sbjct: 115 TSLNPVFTVGEQIAESIRLHQGASREEAMVEAKRMLDQVRIPEAQTILSRYPH------- 167
Query: 339 EGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESEL-IVQ--RALEKIMSNRTT 395
QLSGG +QR+ IA A+ P +L+ DE T+ALD + I+Q + L+K MS
Sbjct: 168 ----QLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMS-MGV 222
Query: 396 IVVAHRLSTVRDV-DTIMVLKNGQVVESGT 424
I + H + V ++ D ++V+ G+ VE+G+
Sbjct: 223 IFITHDMGVVAEIADRVLVMYQGEAVETGS 252
|
Length = 623 |
| >gnl|CDD|183055 PRK11247, ssuB, aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 84.0 bits (208), Expect = 1e-17
Identities = 66/202 (32%), Positives = 106/202 (52%), Gaps = 20/202 (9%)
Query: 222 VFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLRE 281
V L+ + AG+ A VG SG GKST++ ++ L P++G+ LL G + L RE
Sbjct: 27 VLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGE-LLAG----TAPLAEARE 81
Query: 282 QMGLVSQEPALFA-TSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEG 340
L+ Q+ L + +N+ LG + D ++A A GL D + E
Sbjct: 82 DTRLMFQDARLLPWKKVIDNVGLGLKGQWRDAALQALAAV-------GLAD----RANEW 130
Query: 341 GTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNR--TTIVV 398
LSGGQKQR+A+ARA++ P +LLLDE ALDA + + +Q +E + T ++V
Sbjct: 131 PAALSGGQKQRVALARALIHRPGLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLV 190
Query: 399 AHRLS-TVRDVDTIMVLKNGQV 419
H +S V D +++++ G++
Sbjct: 191 THDVSEAVAMADRVLLIEEGKI 212
|
Length = 257 |
| >gnl|CDD|163483 TIGR03771, anch_rpt_ABC, anchored repeat-type ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 83.0 bits (205), Expect = 1e-17
Identities = 59/207 (28%), Positives = 94/207 (45%), Gaps = 12/207 (5%)
Query: 858 LKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRKIGLVQ 917
L G L ++G +G+GK+T++ ++ P GTV + G + R IG V
Sbjct: 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGA-----SPGKGWRHIGYVP 55
Query: 918 QEPAL---FSTTIYENIKYGNEDASEIELMKATKAANAHGFISRMPEGYQSHVGDRGV-Q 973
Q F ++ + G I ++ A+ + + + DR V +
Sbjct: 56 QRHEFAWDFPISVAHTVMSGR--TGHIGWLRRPCVADFAAVRDALRRVGLTELADRPVGE 113
Query: 974 LSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLM-EGRTTIMVAHRL 1032
LSGGQ+QRV +ARA+ PS+LLLDE + LD ++ L+ E +L G +M H L
Sbjct: 114 LSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTELFIELAGAGTAILMTTHDL 173
Query: 1033 STIRNADKIAVLQQGKVAEIGSHEQLL 1059
+ VL G+V G+ +QL
Sbjct: 174 AQAMATCDRVVLLNGRVIADGTPQQLQ 200
|
This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown [Transport and binding proteins, Unknown substrate]. Length = 223 |
| >gnl|CDD|213201 cd03234, ABCG_White, White pigment protein homolog of ABCG transporter subfamily | Back alignment and domain information |
|---|
Score = 81.9 bits (203), Expect = 2e-17
Identities = 61/213 (28%), Positives = 103/213 (48%), Gaps = 25/213 (11%)
Query: 225 NLNFSVDAGKTFAFVGPSGSGKST---IISMVQRLYEPTSGKILLDGHDLKSLQLKWLRE 281
+++ V++G+ A +G SGSGK+T IS TSG+IL +G K Q + +
Sbjct: 25 DVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPDQFQ---K 81
Query: 282 QMGLVSQEPALFAT-------SIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQ 334
+ V Q+ L + + L ++ + R L D
Sbjct: 82 CVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVE--------DVLLRDLAL 133
Query: 335 TQVG-EGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIM-SN 392
T++G +SGG+++R++IA +L +PK+L+LDE TS LD+ + L + L ++ N
Sbjct: 134 TRIGGNLVKGISGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLARRN 193
Query: 393 RTTIVVAH--RLSTVRDVDTIMVLKNGQVVESG 423
R I+ H R R D I++L +G++V SG
Sbjct: 194 RIVILTIHQPRSDLFRLFDRILLLSSGEIVYSG 226
|
The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners. Length = 226 |
| >gnl|CDD|184203 PRK13643, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 84.0 bits (207), Expect = 2e-17
Identities = 58/222 (26%), Positives = 112/222 (50%), Gaps = 26/222 (11%)
Query: 855 NLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLN----LRSLR 910
+++L+V G A++G +GSGKST++ + P G V + + + + ++ +R
Sbjct: 24 DIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKPVR 83
Query: 911 RKIGLVQQEP--ALFSTTIYENIKYG-------NEDASEIELMKATKAANAHGFISRMPE 961
+K+G+V Q P LF T+ +++ +G E A +I K A F + P
Sbjct: 84 KKVGVVFQFPESQLFEETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADEFWEKSP- 142
Query: 962 GYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLME 1021
+LSGGQ +RVAIA + P +L+LDE T+ LD + + + + + +
Sbjct: 143 ----------FELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQ 192
Query: 1022 -GRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGSHEQLLRK 1061
G+T ++V H + + + AD + +L++G + G+ + ++
Sbjct: 193 SGQTVVLVTHLMDDVADYADYVYLLEKGHIISCGTPSDVFQE 234
|
Length = 288 |
| >gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Score = 86.7 bits (215), Expect = 2e-17
Identities = 81/262 (30%), Positives = 122/262 (46%), Gaps = 46/262 (17%)
Query: 198 TLPKLAGQIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKS-TIISMVQRL 256
T P LA IE V F V +++ ++AG+T A VG SGSGKS T +S+++ L
Sbjct: 2 TQPLLA--IENLSVAFRQQQTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLL 59
Query: 257 YEP----TSGKILLDGHDLKSLQLKWLR----EQMGLVSQEPALFATSIANNILLGK--- 305
P SG I G L + LR ++ ++ QEP + + L K
Sbjct: 60 PSPPVVYPSGDIRFHGESLLHASEQTLRGVRGNKIAMIFQEPMVSLNPLHT---LEKQLY 116
Query: 306 EDASMDRVI--EAAKAA-----------NAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRI 352
E S+ R + EAA+ A + P QLSGG++QR+
Sbjct: 117 EVLSLHRGMRREAARGEILNCLDRVGIRQAAKRLTDYPH-----------QLSGGERQRV 165
Query: 353 AIARAVLRNPKILLLDEATSALDAESE---LIVQRALEKIMSNRTTIVVAHRLSTVRDV- 408
IA A+L P++L+ DE T+ALD + L + R L++ + N + + H LS VR +
Sbjct: 166 MIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQEL-NMGLLFITHNLSIVRKLA 224
Query: 409 DTIMVLKNGQVVESGTHVDLIS 430
D + V++NG+ VE L S
Sbjct: 225 DRVAVMQNGRCVEQNRAATLFS 246
|
Length = 529 |
| >gnl|CDD|236554 PRK09536, btuD, corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 85.3 bits (211), Expect = 2e-17
Identities = 57/221 (25%), Positives = 110/221 (49%), Gaps = 36/221 (16%)
Query: 222 VFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLRE 281
V + ++ SV G VGP+G+GK+T++ + PT+G +L+ G D+++L +
Sbjct: 18 VLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASR 77
Query: 282 QMGLVSQEPAL-FATSIANNILLGK-------------EDASMDRVIEAAKAANAHSFVE 327
++ V Q+ +L F + + +G+ + A+++R +E A F +
Sbjct: 78 RVASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVA---QFAD 134
Query: 328 GLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESEL----IVQ 383
T LSGG++QR+ +ARA+ + +LLLDE T++LD ++ +V+
Sbjct: 135 -----------RPVTSLSGGERQRVLLARALAQATPVLLLDEPTASLDINHQVRTLELVR 183
Query: 384 RALEKIMSNRTTIVVAHRLS-TVRDVDTIMVLKNGQVVESG 423
R ++ +T + H L R D +++L +G+V +G
Sbjct: 184 RLVD---DGKTAVAAIHDLDLAARYCDELVLLADGRVRAAG 221
|
Length = 402 |
| >gnl|CDD|236947 PRK11650, ugpC, glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 84.9 bits (211), Expect = 2e-17
Identities = 70/219 (31%), Positives = 111/219 (50%), Gaps = 27/219 (12%)
Query: 222 VFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLRE 281
V + ++ V G+ VGPSG GKST++ MV L TSG+I + G + L+ R+
Sbjct: 19 VIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEPA-DRD 77
Query: 282 QMGLVSQEPALFA-TSIANNILLGKEDASMD------RVIEAAKAANAHSFVEGLPDGYQ 334
+ +V Q AL+ S+ N+ G + M RV EAA+ ++ P
Sbjct: 78 -IAMVFQNYALYPHMSVRENMAYGLKIRGMPKAEIEERVAEAARILELEPLLDRKP---- 132
Query: 335 TQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALE-KIMSNR 393
+LSGGQ+QR+A+ RA++R P + L DE S LDA +L VQ LE + + R
Sbjct: 133 -------RELSGGQRQRVAMGRAIVREPAVFLFDEPLSNLDA--KLRVQMRLEIQRLHRR 183
Query: 394 ---TTIVVAH-RLSTVRDVDTIMVLKNGQVVESGTHVDL 428
T++ V H ++ + D ++V+ G + GT V++
Sbjct: 184 LKTTSLYVTHDQVEAMTLADRVVVMNGGVAEQIGTPVEV 222
|
Length = 356 |
| >gnl|CDD|185037 PRK15079, PRK15079, oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Score = 84.4 bits (209), Expect = 2e-17
Identities = 64/223 (28%), Positives = 110/223 (49%), Gaps = 35/223 (15%)
Query: 857 NLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLN---LRSLRRKI 913
L++ G +L VVG+SG GKST ++ G V G D+ + R++R I
Sbjct: 41 TLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLLGMKDDEWRAVRSDI 100
Query: 914 GLVQQEPALFSTT--------IYENIKYGNEDASEIELMKATKAANAH-----GFISRMP 960
++ Q+P L S I E ++ + S E+ KA I+R P
Sbjct: 101 QMIFQDP-LASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPNLINRYP 159
Query: 961 EGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASE----NLIQEAL 1016
+ SGGQ QR+ IARA++ P +++ DE SALD + + NL+Q+ L
Sbjct: 160 H-----------EFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQ-L 207
Query: 1017 DKLMEGRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGSHEQL 1058
+ M G + I +AH L+ +++ +D++ V+ G E+G+++++
Sbjct: 208 QREM-GLSLIFIAHDLAVVKHISDRVLVMYLGHAVELGTYDEV 249
|
Length = 331 |
| >gnl|CDD|131377 TIGR02324, CP_lyasePhnL, phosphonate C-P lyase system protein PhnL | Back alignment and domain information |
|---|
Score = 82.1 bits (203), Expect = 2e-17
Identities = 54/191 (28%), Positives = 92/191 (48%), Gaps = 25/191 (13%)
Query: 222 VFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKIL-------LDGHDLKSL 274
V +N++ +V+AG+ A GPSG+GKST++ + Y P SG+IL +D
Sbjct: 23 VLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQASPR 82
Query: 275 QLKWLREQ-MGLVSQ----EPALFATSIANNILLGKEDASMDRVIEAAKAANAHSFV--- 326
++ +R + +G VSQ P + A + LL + + R A+A + +
Sbjct: 83 EVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLL---ERGVPREAARARARELLARLNIP 139
Query: 327 EGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRAL 386
E L SGG++QR+ IAR + + ILLLDE T++LDA + +V +
Sbjct: 140 ERLWHLPPAT-------FSGGEQQRVNIARGFIADYPILLLDEPTASLDAANRQVVVELI 192
Query: 387 EKIMSNRTTIV 397
+ + ++
Sbjct: 193 AEAKARGAALI 203
|
Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. Length = 224 |
| >gnl|CDD|184204 PRK13645, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 83.1 bits (205), Expect = 3e-17
Identities = 66/242 (27%), Positives = 114/242 (47%), Gaps = 17/242 (7%)
Query: 202 LAGQIEFSEVCFAYPSRPHMVFENLN---FSVDAGKTFAFVGPSGSGKSTIISMVQRLYE 258
+ I V + Y + F+ LN + K +G +GSGKST+I + L
Sbjct: 3 FSKDIILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLII 62
Query: 259 PTSGKILLDGHDL-----KSLQLKWLREQMGLVSQEP--ALFATSIANNILLGKEDASMD 311
+G+ ++ + + K ++K LR+++GLV Q P LF +I +I G + +
Sbjct: 63 SETGQTIVGDYAIPANLKKIKEVKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNLGEN 122
Query: 312 RVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEAT 371
+ K V+ LP+ Y V +LSGGQK+R+A+A + + L+LDE T
Sbjct: 123 KQEAYKKVPELLKLVQ-LPEDY---VKRSPFELSGGQKRRVALAGIIAMDGNTLVLDEPT 178
Query: 372 SALDAESELIVQRALEKIMSN--RTTIVVAHRLSTV-RDVDTIMVLKNGQVVESGTHVDL 428
LD + E E++ + I+V H + V R D ++V+ G+V+ G+ ++
Sbjct: 179 GGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVISIGSPFEI 238
Query: 429 IS 430
S
Sbjct: 239 FS 240
|
Length = 289 |
| >gnl|CDD|183244 PRK11629, lolD, lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 81.8 bits (202), Expect = 3e-17
Identities = 63/193 (32%), Positives = 100/193 (51%), Gaps = 20/193 (10%)
Query: 852 IFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRS--- 908
+ N++ + G +A+VG SGSGKST++ L+ P SG V+ +G + L+ +
Sbjct: 24 VLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAE 83
Query: 909 LR-RKIGLVQQEPALFST-TIYENIKY----GNEDASEIELMKATKAANAHGFISRMPEG 962
LR +K+G + Q L T EN+ G + +EI +A + A G R
Sbjct: 84 LRNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEIN-SRALEMLAAVGLEHR---- 138
Query: 963 YQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKL--M 1020
R +LSGG++QRVAIARA++ NP ++L DE T LD + + I + L +L +
Sbjct: 139 ----ANHRPSELSGGERQRVAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRL 194
Query: 1021 EGRTTIMVAHRLS 1033
+G ++V H L
Sbjct: 195 QGTAFLVVTHDLQ 207
|
Length = 233 |
| >gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Score = 85.5 bits (212), Expect = 4e-17
Identities = 69/230 (30%), Positives = 114/230 (49%), Gaps = 28/230 (12%)
Query: 851 TIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFY--DPI---SGTVLIDGYDIRTLN 905
T+ +++L++ AG +LA+VG+SGSGKS ++R P+ SG + G + +
Sbjct: 23 TVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHAS 82
Query: 906 LRSLRR----KIGLVQQEPALFSTTIYENIKYGNEDASEIELMKATKAANAHGFISRMPE 961
++LR KI ++ QEP + S ++ + + L + + A G I +
Sbjct: 83 EQTLRGVRGNKIAMIFQEP-MVSLNPLHTLE--KQLYEVLSLHRGMRREAARGEILNCLD 139
Query: 962 GYQSHVGDRGV---------QLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLI 1012
VG R QLSGG++QRV IA A+L P +L+ DE T+ALD + + I
Sbjct: 140 ----RVGIRQAAKRLTDYPHQLSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQI 195
Query: 1013 QEALDKLME--GRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGSHEQLL 1059
+ L +L + + + H LS +R AD++AV+Q G+ E L
Sbjct: 196 LQLLRELQQELNMGLLFITHNLSIVRKLADRVAVMQNGRCVEQNRAATLF 245
|
Length = 529 |
| >gnl|CDD|182817 PRK10895, PRK10895, lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 81.9 bits (202), Expect = 4e-17
Identities = 62/224 (27%), Positives = 115/224 (51%), Gaps = 16/224 (7%)
Query: 214 AYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKS 273
AY R V E+++ +V++G+ +GP+G+GK+T MV + +G I++D D+
Sbjct: 12 AYKGR--RVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISL 69
Query: 274 LQL-KWLREQMGLVSQEPALFAT-SIANN---ILLGKEDASMDRVIEAAKAANAHSFVEG 328
L L R +G + QE ++F S+ +N +L ++D S ++ + A +E
Sbjct: 70 LPLHARARRGIGYLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQREDRANELMEEFHIEH 129
Query: 329 LPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEK 388
L D G LSGG+++R+ IARA+ NPK +LLDE + +D S + ++R +E
Sbjct: 130 LRDSM-------GQSLSGGERRRVEIARALAANPKFILLDEPFAGVDPISVIDIKRIIEH 182
Query: 389 IM-SNRTTIVVAHRLSTVRDV-DTIMVLKNGQVVESGTHVDLIS 430
+ S ++ H + V + ++ G ++ GT +++
Sbjct: 183 LRDSGLGVLITDHNVRETLAVCERAYIVSQGHLIAHGTPTEILQ 226
|
Length = 241 |
| >gnl|CDD|213198 cd03231, ABC_CcmA_heme_exporter, Cytochrome c biogenesis ATP-binding export protein | Back alignment and domain information |
|---|
Score = 80.2 bits (198), Expect = 6e-17
Identities = 49/160 (30%), Positives = 81/160 (50%), Gaps = 13/160 (8%)
Query: 221 MVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLR 280
+F L+F++ AG+ GP+GSGK+T++ ++ L P +G++LL+G L + R
Sbjct: 14 ALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQRDSIAR 73
Query: 281 EQMGLVSQEPALFAT-SIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGE 339
+ + P + T S+ N+ D S ++V EA + F E P
Sbjct: 74 G-LLYLGHAPGIKTTLSVLENLRFWHADHSDEQVEEALARVGLNGF-EDRPVA------- 124
Query: 340 GGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESE 379
QLS GQ++R+A+AR +L + +LDE T+ALD
Sbjct: 125 ---QLSAGQQRRVALARLLLSGRPLWILDEPTTALDKAGV 161
|
CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperon that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. Length = 201 |
| >gnl|CDD|237420 PRK13537, PRK13537, nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Score = 82.2 bits (203), Expect = 8e-17
Identities = 68/246 (27%), Positives = 120/246 (48%), Gaps = 35/246 (14%)
Query: 199 LPKLAGQIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYE 258
P I+F V Y +V + L+F V G+ F +GP+G+GK+T + M+ L
Sbjct: 1 GPMSVAPIDFRNVEKRYGD--KLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTH 58
Query: 259 PTSGKILLDGHDLKSLQLKWLREQMGLVSQ----EPALFATSIANNILL---------GK 305
P +G I L G + S + + R+++G+V Q +P ++ N+L+
Sbjct: 59 PDAGSISLCGEPVPS-RARHARQRVGVVPQFDNLDPDF---TVRENLLVFGRYFGLSAAA 114
Query: 306 EDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKIL 365
A + ++E AK L + +VGE LSGG K+R+ +ARA++ +P +L
Sbjct: 115 ARALVPPLLEFAK----------LENKADAKVGE----LSGGMKRRLTLARALVNDPDVL 160
Query: 366 LLDEATSALDAES-ELIVQRALEKIMSNRTTIVVAHRLSTV-RDVDTIMVLKNGQVVESG 423
+LDE T+ LD ++ L+ +R + +T ++ H + R D + V++ G+ + G
Sbjct: 161 VLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFMEEAERLCDRLCVIEEGRKIAEG 220
Query: 424 THVDLI 429
LI
Sbjct: 221 APHALI 226
|
Length = 306 |
| >gnl|CDD|213182 cd03215, ABC_Carb_Monos_II, Second domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 79.0 bits (196), Expect = 9e-17
Identities = 49/221 (22%), Positives = 98/221 (44%), Gaps = 51/221 (23%)
Query: 836 ELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVL 895
E+R +S K VR +++ +V AG + + G G+G++ + + P SG +
Sbjct: 6 EVRGLSVKGAVR-------DVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEIT 58
Query: 896 IDGYDIRTLNLR-SLRRKIGLV----QQEPALFSTTIYENIKYGNEDASEIELMKATKAA 950
+DG + + R ++R I V ++E + ++ ENI
Sbjct: 59 LDGKPVTRRSPRDAIRAGIAYVPEDRKREGLVLDLSVAENI------------------- 99
Query: 951 NAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASEN 1010
+S LSGG +Q+V +AR + ++P +L+LDE T +D ++
Sbjct: 100 ----ALSS--------------LLSGGNQQKVVLARWLARDPRVLILDEPTRGVDVGAKA 141
Query: 1011 LIQEALDKL-MEGRTTIMVAHRLSTI-RNADKIAVLQQGKV 1049
I + +L G+ ++++ L + D+I V+ +G++
Sbjct: 142 EIYRLIRELADAGKAVLLISSELDELLGLCDRILVMYEGRI 182
|
This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 182 |
| >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Score = 84.5 bits (209), Expect = 1e-16
Identities = 57/221 (25%), Positives = 110/221 (49%), Gaps = 32/221 (14%)
Query: 224 ENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKI-------LLDGHDLKSLQL 276
+N++ V G+ F VG SG+GK+T+ ++ + EPTSG++ +D
Sbjct: 301 DNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPGPDGR 360
Query: 277 KWLREQMGLVSQEPALFA-TSIANNIL------LGKEDASMDRVIEAAKAA----NAHSF 325
+ +G++ QE L+ ++ +N+ L E A M VI A
Sbjct: 361 GRAKRYIGILHQEYDLYPHRTVLDNLTEAIGLELPDELARMKAVITLKMVGFDEEKAEEI 420
Query: 326 VEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRA 385
++ PD +LS G++ R+A+A+ +++ P+I++LDE T +D +++ V +
Sbjct: 421 LDKYPD-----------ELSEGERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHS 469
Query: 386 LEK--IMSNRTTIVVAHRLSTVRDV-DTIMVLKNGQVVESG 423
+ K +T I+V+H + V DV D ++++G++V+ G
Sbjct: 470 ILKAREEMEQTFIIVSHDMDFVLDVCDRAALMRDGKIVKIG 510
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 83.5 bits (207), Expect = 2e-16
Identities = 57/237 (24%), Positives = 107/237 (45%), Gaps = 33/237 (13%)
Query: 205 QIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKI 264
+EF V Y ++ ++L+F +D G A VGP+G+GKST++ ++ P SG +
Sbjct: 321 VLEFENVSKGYDGG-RLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTV 379
Query: 265 LLDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNILLGKEDASMDRVIEAAKAANAHS 324
+ G +K +G Q + +L + + + + +
Sbjct: 380 KV-GETVK----------IGYFDQH---RDELDPDKTVL---EELSEGFPDGDEQ-EVRA 421
Query: 325 FVEGL---PDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELI 381
++ + + VG LSGG+K R+ +A+ +L+ P +LLLDE T+ LD ES
Sbjct: 422 YLGRFGFTGEDQEKPVGV----LSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIES--- 474
Query: 382 VQRALEKIMSNR--TTIVVAHRLSTVRDV-DTIMVLKNGQVVESGTHVDLISKGGEY 435
ALE+ + + T ++V+H + V I ++++ G + D + + E
Sbjct: 475 -LEALEEALLDFEGTVLLVSHDRYFLDRVATRIWLVEDKVEEFEGGYEDYLEQKKER 530
|
Length = 530 |
| >gnl|CDD|185067 PRK15112, PRK15112, antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Score = 80.2 bits (198), Expect = 2e-16
Identities = 66/245 (26%), Positives = 123/245 (50%), Gaps = 31/245 (12%)
Query: 835 IELRNVS--FKYPV----RPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYD 888
+E+RN+S F+Y R + + L+ + G++LA++G++GSGKST+ ++ +
Sbjct: 5 LEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIE 64
Query: 889 PISGTVLIDGYDIRTLNLRSLRRKIGLVQQEPALFSTTIYENIKYG---------NEDAS 939
P SG +LID + + + ++I ++ Q+P ST++ + N D
Sbjct: 65 PTSGELLIDDHPLHFGDYSYRSQRIRMIFQDP---STSLNPRQRISQILDFPLRLNTDLE 121
Query: 940 EIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDE 999
+ K + Y H+ L+ GQKQR+ +ARA++ P +++ DE
Sbjct: 122 PEQREKQIIETLRQVGLLPDHASYYPHM------LAPGQKQRLGLARALILRPKVIIADE 175
Query: 1000 ATSALDTASE----NLIQEALDKLMEGRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGS 1054
A ++LD + NL+ E +K +G + I V L +++ +D++ V+ QG+V E GS
Sbjct: 176 ALASLDMSMRSQLINLMLELQEK--QGISYIYVTQHLGMMKHISDQVLVMHQGEVVERGS 233
Query: 1055 HEQLL 1059
+L
Sbjct: 234 TADVL 238
|
Length = 267 |
| >gnl|CDD|233665 TIGR01978, sufC, FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Score = 79.6 bits (197), Expect = 2e-16
Identities = 67/219 (30%), Positives = 107/219 (48%), Gaps = 23/219 (10%)
Query: 222 VFENLNFSVDAGKTFAFVGPSGSGKSTI--ISMVQRLYEPTSGKILLDGHDLKSLQL-KW 278
+ + +N +V G+ A +GP+GSGKST+ YE TSG IL G DL L+ +
Sbjct: 15 ILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDER 74
Query: 279 LREQMGLVSQEP--------ALFATSIANNIL--LGKEDASMDRVIEAAKAANAHSFVEG 328
R + L Q P F S N G+E + ++ KA A + G
Sbjct: 75 ARAGLFLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLA---LLG 131
Query: 329 LPDGYQTQ-VGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALE 387
+ + + + V EG SGG+K+R I + L PK+ +LDE S LD ++ IV +
Sbjct: 132 MDEEFLNRSVNEG---FSGGEKKRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGIN 188
Query: 388 KIMS-NRTTIVVAH--RLSTVRDVDTIMVLKNGQVVESG 423
++ +R+ +++ H RL D + VL +G++V+SG
Sbjct: 189 RLREPDRSFLIITHYQRLLNYIKPDYVHVLLDGRIVKSG 227
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PMID:12554644) or associated with the membrane (PMID:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 243 |
| >gnl|CDD|226631 COG4152, COG4152, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 80.9 bits (200), Expect = 2e-16
Identities = 62/221 (28%), Positives = 98/221 (44%), Gaps = 36/221 (16%)
Query: 222 VFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQ---LKW 278
+N++F V G+ F +GP+G+GK+T M+ L EPT G+I +G L + +
Sbjct: 17 AVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLSQEIKNRIGY 76
Query: 279 LREQMGL-----VSQEPALFATSIANNILLG--KEDA--SMDRVIEAAKAANA-HSFVEG 328
L E+ GL V + A L G K + + +E + ++
Sbjct: 77 LPEERGLYPKMTVEDQLKYLAE------LKGMPKAEIQKKLQAWLERLEIVGKKTKKIK- 129
Query: 329 LPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALD-AESELIVQRALE 387
+LS G +Q+I AV+ P++L+LDE S LD EL+ E
Sbjct: 130 --------------ELSKGNQQKIQFISAVIHEPELLILDEPFSGLDPVNVELLKDAIFE 175
Query: 388 KIMSNRTTIVVAHRLSTVRDV-DTIMVLKNGQVVESGTHVD 427
T I +HR+ V ++ D +++LK GQ V GT D
Sbjct: 176 LKEEGATIIFSSHRMEHVEELCDRLLMLKKGQTVLYGTVED 216
|
Length = 300 |
| >gnl|CDD|215558 PLN03073, PLN03073, ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Score = 83.8 bits (207), Expect = 2e-16
Identities = 76/243 (31%), Positives = 110/243 (45%), Gaps = 51/243 (20%)
Query: 820 PDDPASKEVTEIKGNIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTV 879
PDD + I + SF YP P +F+NLN + +A+VG +G GKST+
Sbjct: 500 PDDRPGPPI------ISFSDASFGYPGGP--LLFKNLNFGIDLDSRIAMVGPNGIGKSTI 551
Query: 880 ISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRKIGLVQQEPALFSTTIYENIKYGNEDAS 939
+ L+ P SGTV RS + ++ A+FS + + D S
Sbjct: 552 LKLISGELQPSSGTVF-----------RSAKVRM-------AVFSQHHVDGL-----DLS 588
Query: 940 EIELMKATKAANAHGFISRMPEGYQSHVGDRGVQ----------LSGGQKQRVAIARAIL 989
L+ F + ++H+G GV LSGGQK RVA A+
Sbjct: 589 SNPLLYM-----MRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITF 643
Query: 990 KNPSILLLDEATSALD-TASENLIQEALDKLMEGRTTIMVAHRLSTIRNA-DKIAVLQQG 1047
K P ILLLDE ++ LD A E LIQ + L +G +MV+H I + D++ V+ +G
Sbjct: 644 KKPHILLLDEPSNHLDLDAVEALIQGLV--LFQG-GVLMVSHDEHLISGSVDELWVVSEG 700
Query: 1048 KVA 1050
KV
Sbjct: 701 KVT 703
|
Length = 718 |
| >gnl|CDD|163483 TIGR03771, anch_rpt_ABC, anchored repeat-type ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 78.7 bits (194), Expect = 3e-16
Identities = 60/208 (28%), Positives = 96/208 (46%), Gaps = 16/208 (7%)
Query: 228 FSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGLVS 287
S D G+ +GP+G+GK+T++ + L P G + + G +G V
Sbjct: 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPGKG-----WRHIGYVP 55
Query: 288 QEPAL---FATSIANNILLGKED--ASMDRVIEAAKAANAHSFVE-GLPDGYQTQVGEGG 341
Q F S+A+ ++ G+ + R A AA + GL + VGE
Sbjct: 56 QRHEFAWDFPISVAHTVMSGRTGHIGWLRRPCVADFAAVRDALRRVGLTELADRPVGE-- 113
Query: 342 TQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAES-ELIVQRALEKIMSNRTTIVVAH 400
LSGGQ+QR+ +ARA+ P +LLLDE + LD + EL+ + +E + ++ H
Sbjct: 114 --LSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTELFIELAGAGTAILMTTH 171
Query: 401 RLSTVRDVDTIMVLKNGQVVESGTHVDL 428
L+ +VL NG+V+ GT L
Sbjct: 172 DLAQAMATCDRVVLLNGRVIADGTPQQL 199
|
This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown [Transport and binding proteins, Unknown substrate]. Length = 223 |
| >gnl|CDD|226631 COG4152, COG4152, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 80.5 bits (199), Expect = 3e-16
Identities = 53/234 (22%), Positives = 117/234 (50%), Gaps = 18/234 (7%)
Query: 835 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTV 894
+E+ V+ + D +N++ +V G ++G +G+GK+T +++ +P G +
Sbjct: 3 LEIEGVTKSFG---DKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEI 59
Query: 895 LIDGYDIRTLNLRSLRRKIGLVQQEPALF-STTIYENIKYGNEDASEIELMKATKAA-NA 952
+G + + ++ +IG + +E L+ T+ + +KY +E++ M +
Sbjct: 60 TWNGGPLS----QEIKNRIGYLPEERGLYPKMTVEDQLKY----LAELKGMPKAEIQKKL 111
Query: 953 HGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLI 1012
++ R+ + +LS G +Q++ A++ P +L+LDE S LD + L+
Sbjct: 112 QAWLERL--EIVGKKTKKIKELSKGNQQKIQFISAVIHEPELLILDEPFSGLDPVNVELL 169
Query: 1013 QEALDKLM-EGRTTIMVAHRLSTI-RNADKIAVLQQGKVAEIGSHEQLLRKENG 1064
++A+ +L EG T I +HR+ + D++ +L++G+ G+ E +R+ G
Sbjct: 170 KDAIFELKEEGATIIFSSHRMEHVEELCDRLLMLKKGQTVLYGTVED-IRRSFG 222
|
Length = 300 |
| >gnl|CDD|185037 PRK15079, PRK15079, oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Score = 80.5 bits (199), Expect = 4e-16
Identities = 65/216 (30%), Positives = 99/216 (45%), Gaps = 21/216 (9%)
Query: 227 NFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLRE----- 281
+ G+T VG SG GKST + L + T G++ G DL ++ R
Sbjct: 41 TLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLLGMKDDEWRAVRSDI 100
Query: 282 QM----GLVSQEPAL-FATSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQ 336
QM L S P + IA + S V + KA V LP+
Sbjct: 101 QMIFQDPLASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLK--VGLLPN----L 154
Query: 337 VGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIV---QRALEKIMSNR 393
+ + SGGQ QRI IARA++ PK+++ DE SALD + V + L++ M
Sbjct: 155 INRYPHEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMG-L 213
Query: 394 TTIVVAHRLSTVRDV-DTIMVLKNGQVVESGTHVDL 428
+ I +AH L+ V+ + D ++V+ G VE GT+ ++
Sbjct: 214 SLIFIAHDLAVVKHISDRVLVMYLGHAVELGTYDEV 249
|
Length = 331 |
| >gnl|CDD|236947 PRK11650, ugpC, glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 80.7 bits (200), Expect = 5e-16
Identities = 68/235 (28%), Positives = 111/235 (47%), Gaps = 33/235 (14%)
Query: 834 NIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGT 893
++L+ V Y + + ++L V+ G + +VG SG GKST++ +V SG
Sbjct: 3 GLKLQAVRKSYD--GKTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGE 60
Query: 894 VLIDGYDIRTLNLRSLRRKIGLVQQEPALFS-TTIYENIKYG----NEDASEIE--LMKA 946
+ I G + L R I +V Q AL+ ++ EN+ YG +EIE + +A
Sbjct: 61 IWIGGRVVNELEPAD--RDIAMVFQNYALYPHMSVRENMAYGLKIRGMPKAEIEERVAEA 118
Query: 947 TKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDT 1006
+ + R P +LSGGQ+QRVA+ RAI++ P++ L DE S LD
Sbjct: 119 ARILELEPLLDRKPR-----------ELSGGQRQRVAMGRAIVREPAVFLFDEPLSNLDA 167
Query: 1007 A------SENLIQEALDKLMEGRTTIMVAH-RLSTIRNADKIAVLQQGKVAEIGS 1054
E IQ +L T++ V H ++ + AD++ V+ G +IG+
Sbjct: 168 KLRVQMRLE--IQRLHRRL--KTTSLYVTHDQVEAMTLADRVVVMNGGVAEQIGT 218
|
Length = 356 |
| >gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 82.3 bits (204), Expect = 5e-16
Identities = 64/221 (28%), Positives = 107/221 (48%), Gaps = 34/221 (15%)
Query: 225 NLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMG 284
+++F AG+ A +G +G+GKST++ ++ Y+P +G IL+DG + ++ +
Sbjct: 22 DISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDG---QEMRFASTTAALA 78
Query: 285 ----LVSQE----PALFATSIANNILLGKEDASMDRVIEAAKAANAHSFVEGL-----PD 331
++ QE P + ++A N+ LG+ V A +E L PD
Sbjct: 79 AGVAIIYQELHLVPEM---TVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDPD 135
Query: 332 GYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDA-ESELI--VQRALEK 388
T + LS GQ+Q + IA+A+ RN +++ DE TS+L A E E + V R L
Sbjct: 136 ---TPLKY----LSIGQRQMVEIAKALARNARVIAFDEPTSSLSAREIEQLFRVIRELRA 188
Query: 389 IMSNRTTIVVAHRLSTV-RDVDTIMVLKNGQVVESGTHVDL 428
R + V+HR+ + D I V K+G+ V T D+
Sbjct: 189 --EGRVILYVSHRMEEIFALCDAITVFKDGRYVA--TFDDM 225
|
Length = 501 |
| >gnl|CDD|226592 COG4107, PhnK, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 78.6 bits (194), Expect = 5e-16
Identities = 65/241 (26%), Positives = 112/241 (46%), Gaps = 34/241 (14%)
Query: 853 FENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSL--- 909
+++ + G L +VG+SGSGK+T++ + P +GTV Y +R R L
Sbjct: 22 CRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAGTV---TYRMRDGQPRDLYTM 78
Query: 910 ----RRKI-----GLVQQEPALFSTTIYENIKYGNEDASEI-ELMKATKA-------ANA 952
RR++ G V Q P + ++ I E + A A A A
Sbjct: 79 SEAERRRLLRTEWGFVHQNPR-------DGLRMQVSAGGNIGERLMAIGARHYGNIRAEA 131
Query: 953 HGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLI 1012
++ + E + D SGG +QR+ IAR ++ P ++ +DE T LD + + +
Sbjct: 132 QDWLEEV-EIDLDRIDDLPRTFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARL 190
Query: 1013 QEALDKLME--GRTTIMVAHRLSTIR-NADKIAVLQQGKVAEIGSHEQLLRKENGIYKQL 1069
+ L L+ G ++V H L+ R AD++ V++QG+V E G +++L + Y QL
Sbjct: 191 LDLLRGLVRELGLAVVIVTHDLAVARLLADRLMVMKQGQVVESGLTDRVLDDPHHPYTQL 250
Query: 1070 I 1070
+
Sbjct: 251 L 251
|
Length = 258 |
| >gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Score = 82.0 bits (203), Expect = 6e-16
Identities = 63/211 (29%), Positives = 113/211 (53%), Gaps = 21/211 (9%)
Query: 221 MVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLR 280
V + ++F++ AG+ A +G +G+GKST++ ++ + P SG + + G+ L
Sbjct: 25 EVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLT-PAKA 83
Query: 281 EQMG--LVSQEPALFAT-SIANNILLG--KEDASMDRVIEAAKAANAHSFVEGLPDGYQT 335
Q+G LV QEP LF S+ NIL G K ASM ++ + A ++
Sbjct: 84 HQLGIYLVPQEPLLFPNLSVKENILFGLPKRQASMQKMKQLLAALGCQLDLD-------- 135
Query: 336 QVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALD-AESELIVQRALEKIMSNRT 394
G+ L +Q + I R ++R+ +IL+LDE T++L AE+E + R + ++++
Sbjct: 136 --SSAGS-LEVADRQIVEILRGLMRDSRILILDEPTASLTPAETERLFSR-IRELLAQGV 191
Query: 395 TIV-VAHRLSTVRDV-DTIMVLKNGQVVESG 423
IV ++H+L +R + D I V+++G + SG
Sbjct: 192 GIVFISHKLPEIRQLADRISVMRDGTIALSG 222
|
Length = 510 |
| >gnl|CDD|234200 TIGR03411, urea_trans_UrtD, urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Score = 78.4 bits (194), Expect = 6e-16
Identities = 59/226 (26%), Positives = 101/226 (44%), Gaps = 46/226 (20%)
Query: 225 NLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLRE--- 281
+L+ VD G+ +GP+G+GK+T++ ++ P G +L G DL L E
Sbjct: 20 DLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGL-----PEHQI 74
Query: 282 -QMGLVS--QEPALF-ATSIANNILL-----------------GKEDASMDRVIEAAKAA 320
+ G+ Q+P +F ++ N+ L +E ++ V+E
Sbjct: 75 ARAGIGRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLE----- 129
Query: 321 NAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSAL-DAESE 379
GL D G LS GQKQ + I ++++PK+LLLDE + + D E+E
Sbjct: 130 -----TIGLADEADRLAGL----LSHGQKQWLEIGMLLMQDPKLLLLDEPVAGMTDEETE 180
Query: 380 LIVQRALEKIMSNRTTIVVAHRLSTVRDVDT-IMVLKNGQVVESGT 424
+ L+ + + +VV H + VR + + VL G V+ G+
Sbjct: 181 KTAE-LLKSLAGKHSVVVVEHDMEFVRSIADKVTVLHQGSVLAEGS 225
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 242 |
| >gnl|CDD|233305 TIGR01189, ccmA, heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Score = 77.0 bits (190), Expect = 7e-16
Identities = 48/160 (30%), Positives = 75/160 (46%), Gaps = 13/160 (8%)
Query: 221 MVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLR 280
M+FE L+F+++AG+ GP+G GK+T++ ++ L P SG++ +G L + +
Sbjct: 14 MLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQRDEP-H 72
Query: 281 EQMGLVSQEPALFAT-SIANNILLGKED-ASMDRVIEAAKAANAHSFVEGLPDGYQTQVG 338
+ + P L S N+ R IE A AA GL
Sbjct: 73 RNILYLGHLPGLKPELSALENLHFWAAIHGGAQRTIEDALAA------VGLTGFEDLPAA 126
Query: 339 EGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAES 378
QLS GQ++R+A+AR L + +LDE T+ALD
Sbjct: 127 ----QLSAGQQRRLALARLWLSRAPLWILDEPTTALDKAG 162
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other]. Length = 198 |
| >gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 81.1 bits (201), Expect = 8e-16
Identities = 63/236 (26%), Positives = 115/236 (48%), Gaps = 43/236 (18%)
Query: 835 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKST---VISLVMRFYDPIS 891
+E++N++ + + +N++LKV AG +++ G++G+GKST V+S V +
Sbjct: 6 LEMKNITKTFG---GVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYP-HGTYE 61
Query: 892 GTVLIDGYDIRTLNLRSLRRK-IGLVQQEPALFST-TIYENIKYGNEDASEIELMKATKA 949
G ++ +G +++ N+R R I ++ QE AL ++ ENI GNE
Sbjct: 62 GEIIFEGEELQASNIRDTERAGIAIIHQELALVKELSVLENIFLGNE------------- 108
Query: 950 ANAHGFI--SRMPEGYQS---------HVGDRGVQLSGGQKQRVAIARAILKNPSILLLD 998
G + M Q + L GQ+Q V IA+A+ K +L+LD
Sbjct: 109 ITPGGIMDYDAMYLRAQKLLAQLKLDINPATPVGNLGLGQQQLVEIAKALNKQARLLILD 168
Query: 999 EATSALDTASE-----NLIQEALDKLMEGRTTIMVAHRLSTIRN-ADKIAVLQQGK 1048
E T++L T SE ++I++ G I ++H+L+ ++ +D I V++ G+
Sbjct: 169 EPTASL-TESETAVLLDIIRDLKAH---GIACIYISHKLNEVKAISDTICVIRDGR 220
|
Length = 506 |
| >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Score = 81.4 bits (201), Expect = 9e-16
Identities = 61/247 (24%), Positives = 112/247 (45%), Gaps = 39/247 (15%)
Query: 222 VFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRL--YEPTSGKIL-------------- 265
V +N++F+++ G+ +G SG+GKS ++ +++ + YEPTSG+I+
Sbjct: 15 VLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYVER 74
Query: 266 --LDGHDLKSLQLKWLREQMGLVSQEPALF-------ATSIANNILLGKEDASMDRVIEA 316
G E++ + L A + L +D +D V+EA
Sbjct: 75 PSKVGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEA 134
Query: 317 A-----KAANAHSFVEGLPDGYQTQVGEGGTQ----LSGGQKQRIAIARAVLRNPKILLL 367
+ A L + Q+ T LSGG+KQR+ +AR + + P + L
Sbjct: 135 LEEIGYEGKEAVGRAVDLIE--MVQLSHRITHIARDLSGGEKQRVVLARQLAKEPFLFLA 192
Query: 368 DEATSALDAESELIVQRALEK--IMSNRTTIVVAHRLSTVRDV-DTIMVLKNGQVVESGT 424
DE T LD ++ +V ALE+ S + ++ +H + D+ D + L+NG++ E GT
Sbjct: 193 DEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPEVIEDLSDKAIWLENGEIKEEGT 252
Query: 425 HVDLISK 431
++++
Sbjct: 253 PDEVVAV 259
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520 |
| >gnl|CDD|227019 COG4674, COG4674, Uncharacterized ABC-type transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 77.8 bits (192), Expect = 9e-16
Identities = 58/228 (25%), Positives = 102/228 (44%), Gaps = 38/228 (16%)
Query: 225 NLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGH-DLKSLQLKWLREQM 283
+L+FSVD G+ +GP+G+GK+T++ ++ P G++L DG DL L + +
Sbjct: 23 DLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLP-EHRIARA 81
Query: 284 GLVS--QEPALF-ATSIANNI-----------------LLGKEDASMDRVIEAAKAANAH 323
G+ Q+P +F ++ N+ L +E +D ++
Sbjct: 82 GIGRKFQKPTVFENLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLA-------- 133
Query: 324 SFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQ 383
GL D LS GQKQ + I + ++PK+LLLDE + +
Sbjct: 134 --TIGLGDERDRLAAL----LSHGQKQWLEIGMLLAQDPKLLLLDEPVAGMTDAETEKTA 187
Query: 384 RALEKIMSNRTTIVVAHRLSTVRDV-DTIMVLKNGQVVESGTHVDLIS 430
L+ + + +VV H + VR++ D + VL G V+ G+ +D +
Sbjct: 188 ELLKSLAGKHSILVVEHDMGFVREIADKVTVLHEGSVLAEGS-LDEVQ 234
|
Length = 249 |
| >gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 80.7 bits (200), Expect = 1e-15
Identities = 61/208 (29%), Positives = 108/208 (51%), Gaps = 24/208 (11%)
Query: 225 NLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPT---SGKILLDGHDLKSLQLKWLRE 281
N++ V AG+ + G +G+GKST++ ++ +Y P G+I+ +G +L++ ++ E
Sbjct: 23 NVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVY-PHGTYEGEIIFEGEELQASNIR-DTE 80
Query: 282 QMGLV--SQEPALFAT-SIANNILLGKEDASMDRVIEAAKAANAHSFVEGL-----PDGY 333
+ G+ QE AL S+ NI LG E + A A + L P
Sbjct: 81 RAGIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDINPA-- 138
Query: 334 QTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNR 393
T VG L GQ+Q + IA+A+ + ++L+LDE T++L ESE V + + +
Sbjct: 139 -TPVGN----LGLGQQQLVEIAKALNKQARLLILDEPTASL-TESETAVLLDIIRDLKAH 192
Query: 394 --TTIVVAHRLSTVRDV-DTIMVLKNGQ 418
I ++H+L+ V+ + DTI V+++G+
Sbjct: 193 GIACIYISHKLNEVKAISDTICVIRDGR 220
|
Length = 506 |
| >gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 79.9 bits (198), Expect = 2e-15
Identities = 53/233 (22%), Positives = 102/233 (43%), Gaps = 33/233 (14%)
Query: 855 NLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRKIG 914
+++ +V AG + + G +G+G+S ++ + P SG +L++G D+ RR++G
Sbjct: 276 DVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPASGRILLNGKDVLGRLSPRERRRLG 335
Query: 915 LV------QQEPALFSTTIYENI-----------KYGNEDASEIELMKATKAANAHGFIS 957
L + ++ EN+ + G D I A I
Sbjct: 336 LAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIR-------KFARELIE 388
Query: 958 RM---PEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQE 1014
+ LSGG +Q++ +AR + + P +L+ + T LD + I E
Sbjct: 389 EFDVRAPSPDAPAR----SLSGGNQQKLILARELARRPDLLIAAQPTRGLDVGAIEFIHE 444
Query: 1015 ALDKL-MEGRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGSHEQLLRKENGI 1065
L +L G+ ++++ L I +D+IAV+ +G++ I E+ R+E G+
Sbjct: 445 RLLELRDAGKAVLLISEDLDEILELSDRIAVIYEGRIVGIVPPEEATREEIGL 497
|
Length = 501 |
| >gnl|CDD|235150 PRK03695, PRK03695, vitamin B12-transporter ATPase; Provisional | Back alignment and domain information |
|---|
Score = 76.9 bits (190), Expect = 2e-15
Identities = 64/209 (30%), Positives = 104/209 (49%), Gaps = 17/209 (8%)
Query: 226 LNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMG- 284
L+ V AG+ VGP+G+GKST+++ + L P SG I G L++ L
Sbjct: 15 LSAEVRAGEILHLVGPNGAGKSTLLARMAGLL-PGSGSIQFAGQPLEAWSAAELARHRAY 73
Query: 285 LVSQEPALFATSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQL 344
L Q+ FA + + L + D + + +A A + GL D V QL
Sbjct: 74 LSQQQTPPFAMPVFQYLTLHQPDKTRTEAVASALNEVAEAL--GLDDKLGRSVN----QL 127
Query: 345 SGGQKQRIAIARAVLR-----NP--KILLLDEATSALDAESELIVQRALEKIMSNRTTIV 397
SGG+ QR+ +A VL+ NP ++LLLDE ++LD + + R L ++ +V
Sbjct: 128 SGGEWQRVRLAAVVLQVWPDINPAGQLLLLDEPMNSLDVAQQAALDRLLSELCQQGIAVV 187
Query: 398 VA-HRLS-TVRDVDTIMVLKNGQVVESGT 424
++ H L+ T+R D + +LK G+++ SG
Sbjct: 188 MSSHDLNHTLRHADRVWLLKQGKLLASGR 216
|
Length = 248 |
| >gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Score = 81.6 bits (201), Expect = 2e-15
Identities = 68/243 (27%), Positives = 121/243 (49%), Gaps = 18/243 (7%)
Query: 224 ENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQM 283
+ LN + + AF+G +G+GK+T +S++ L PTSG +L+ G D+++ L +R+ +
Sbjct: 947 DRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIET-NLDAVRQSL 1005
Query: 284 GLVSQEPALFA-TSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPD--GYQTQVGEG 340
G+ Q LF ++A +IL + ++ A +E + + G + E
Sbjct: 1006 GMCPQHNILFHHLTVAEHILFYAQ-------LKGRSWEEAQLEMEAMLEDTGLHHKRNEE 1058
Query: 341 GTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAH 400
LSGG ++++++A A + + K+++LDE TS +D S + L K S RT I+ H
Sbjct: 1059 AQDLSGGMQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYRSGRTIIMSTH 1118
Query: 401 RLSTVRDV-DTIMVLKNGQVVESGTHVDLIS--KGGEYAALV----NLQSSEHLSNPSSI 453
+ + D I ++ G++ SGT + L + G Y LV N+QS +
Sbjct: 1119 HMDEADLLGDRIAIISQGRLYCSGTPLFLKNCFGTGFYLTLVRKMKNIQSQRGGCEGTCS 1178
Query: 454 CYS 456
C S
Sbjct: 1179 CTS 1181
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272 |
| >gnl|CDD|183280 PRK11701, phnK, phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Score = 77.3 bits (191), Expect = 2e-15
Identities = 63/235 (26%), Positives = 107/235 (45%), Gaps = 56/235 (23%)
Query: 223 FENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDG-----HDLKSL--- 274
+++F + G+ VG SGSGK+T+++ + P +G++ DL +L
Sbjct: 22 CRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEA 81
Query: 275 QLKWL-REQMGLVSQEPA---LFATSIANNI---LLG---------KEDAS--MDRV-IE 315
+ + L R + G V Q P S NI L+ + A ++RV I+
Sbjct: 82 ERRRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGDIRATAGDWLERVEID 141
Query: 316 AAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALD 375
AA+ ++ LP T SGG +QR+ IAR ++ +P+++ +DE T LD
Sbjct: 142 AAR-------IDDLP-----------TTFSGGMQQRLQIARNLVTHPRLVFMDEPTGGLD 183
Query: 376 AESELIVQRALEKIMSNRTT------IVVAHRLSTVRDV-DTIMVLKNGQVVESG 423
VQ L ++ ++V H L+ R + ++V+K G+VVESG
Sbjct: 184 VS----VQARLLDLLRGLVRELGLAVVIVTHDLAVARLLAHRLLVMKQGRVVESG 234
|
Length = 258 |
| >gnl|CDD|131377 TIGR02324, CP_lyasePhnL, phosphonate C-P lyase system protein PhnL | Back alignment and domain information |
|---|
Score = 75.9 bits (187), Expect = 3e-15
Identities = 54/197 (27%), Positives = 95/197 (48%), Gaps = 33/197 (16%)
Query: 850 ITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLI----DGYDI---- 901
+ + +N++L V+AG +A+ G SG+GKST++ + Y P SG +L+ D+
Sbjct: 21 LPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQAS 80
Query: 902 --RTLNLRSLRRKIGLVQQ----EPALFSTTIYENIKYGNEDASEIELMKATKAANAHGF 955
L +R R+ IG V Q P + + + E E + + A A
Sbjct: 81 PREVLEVR--RKTIGYVSQFLRVIPRVSALEVVA------EPLLERGVPREAARARAREL 132
Query: 956 ISRMPEGYQSHVGDRGVQL-----SGGQKQRVAIARAILKNPSILLLDEATSALDTASEN 1010
++R+ ++ +R L SGG++QRV IAR + + ILLLDE T++LD A+
Sbjct: 133 LARL------NIPERLWHLPPATFSGGEQQRVNIARGFIADYPILLLDEPTASLDAANRQ 186
Query: 1011 LIQEALDKLMEGRTTIM 1027
++ E + + ++
Sbjct: 187 VVVELIAEAKARGAALI 203
|
Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. Length = 224 |
| >gnl|CDD|236688 PRK10418, nikD, nickel transporter ATP-binding protein NikD; Provisional | Back alignment and domain information |
|---|
Score = 76.3 bits (188), Expect = 4e-15
Identities = 66/243 (27%), Positives = 110/243 (45%), Gaps = 34/243 (13%)
Query: 835 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDP----I 890
IELRN++ ++ + ++L + GR LA+VG SGSGKS + +
Sbjct: 5 IELRNIA----LQAAQPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQT 60
Query: 891 SGTVLIDGYDIRTLNLRSLRRKIGLVQQEPALFSTTIYENIKYGNE----------DASE 940
+G VL+DG + LR RKI + Q P ++ + E DA+
Sbjct: 61 AGRVLLDGKPVAPCALRG--RKIATIMQNPRSAFNPLHTMHTHARETCLALGKPADDATL 118
Query: 941 IELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEA 1000
++A NA + P ++SGG QR+ IA A+L ++ DE
Sbjct: 119 TAALEAVGLENAARVLKLYP-----------FEMSGGMLQRMMIALALLCEAPFIIADEP 167
Query: 1001 TSALDTASENLIQEALDKLMEGRT--TIMVAHRLSTI-RNADKIAVLQQGKVAEIGSHEQ 1057
T+ LD ++ I + L+ +++ R ++V H + + R AD +AV+ G++ E G E
Sbjct: 168 TTDLDVVAQARILDLLESIVQKRALGMLLVTHDMGVVARLADDVAVMSHGRIVEQGDVET 227
Query: 1058 LLR 1060
L
Sbjct: 228 LFN 230
|
Length = 254 |
| >gnl|CDD|188317 TIGR03415, ABC_choXWV_ATP, choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 77.5 bits (191), Expect = 6e-15
Identities = 71/232 (30%), Positives = 117/232 (50%), Gaps = 31/232 (13%)
Query: 854 ENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPIS-GTVLI---DGY-DIRTLNLRS 908
N +L + G ++G SGSGKST++ V +P+S G+VL+ DG D+ + +
Sbjct: 41 HNASLDIEEGEICVLMGLSGSGKSTLLRAVNGL-NPVSRGSVLVKDGDGSVDVANCDAAT 99
Query: 909 LRR----KIGLVQQEPALFS-TTIYENIKYGNEDASEIELMKATKAANAHGFISRMPEGY 963
LRR ++ +V Q+ AL T+ EN+ +G E M+ A + E
Sbjct: 100 LRRLRTHRVSMVFQQFALLPWRTVEENVAFGLE-------MQGMPKAERRKRVDEQLE-- 150
Query: 964 QSHVG-----DRGV-QLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEALD 1017
VG DR +LSGG +QRV +ARA ILL+DE SALD +Q+ L
Sbjct: 151 --LVGLAQWADRKPGELSGGMQQRVGLARAFATEAPILLMDEPFSALDPLIRTQLQDELL 208
Query: 1018 KLME--GRTTIMVAHRL-STIRNADKIAVLQQGKVAEIGSHEQLLRKENGIY 1066
+L +T + V+H L ++ ++IA+++ G++ + G+ E+++ Y
Sbjct: 209 ELQSKLKKTIVFVSHDLDEALKIGNRIAIMEGGRIIQHGTPEEIVLNPANDY 260
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines [Transport and binding proteins, Amino acids, peptides and amines]. Length = 382 |
| >gnl|CDD|226968 COG4615, PvdE, ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 78.7 bits (194), Expect = 7e-15
Identities = 112/523 (21%), Positives = 201/523 (38%), Gaps = 78/523 (14%)
Query: 559 FVGLAVVTIPVYLLQHYFYTLMGEHLTARVRLSMFSAILSNEIGWFDLDENNTGLLISTL 618
F+GL ++ + L+ T +G+H ++R IL + + + L++ L
Sbjct: 54 FLGLLLLFMVSSLISQLGLTTLGQHFIYKLRSEFIKKILDTPLERIE--RLGSARLLAGL 111
Query: 619 AADATLVRSALADRLSIIVQNVALTVTAFVIAFILSWRLAAVVAASLPL-LIGAFVAEQL 677
+D + A + RL +VQ + LT+ + LS ++ + + + + G FV
Sbjct: 112 TSDVRNISFAFS-RLPELVQAIILTLGSAAYLAYLSPKMFLLTVVWIVVTIWGGFVLMAR 170
Query: 678 FLKGFG----------GDYNRAYSRATSV------AREAIANIRTVAAYGIEKRISIQFA 721
K DY + A N+ A I
Sbjct: 171 VYKHMAAARETEDKLQNDYQTILEGRKELTLNRERAEYVHNNLYIPDAQEYRHHIIRANT 230
Query: 722 SELSQPN-KQALLRGHISGFGYGVSQLLSLCSYALGLWYASVLIKQKGS--NFGDIMKSF 778
L N +L G I G + ++ L S + VL+ + + I+ +
Sbjct: 231 FHLLAVNWSNIMLLGLI-GLVFWLALSLGWASTNVAATIVLVLLFLRTPLLSAVGILPTL 289
Query: 779 MVLIITALAVAETLALAPDIVKGSQALGPVFGILYRKTAIQPDDPASKEVTEIKGNIELR 838
+ + +A+ L LAP D P + + K +ELR
Sbjct: 290 LTAQVAFNKIAK-LELAPYK---------------------ADFPRPQAFPDWKT-LELR 326
Query: 839 NVSFKYP-----VRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGT 893
NV F Y V P +NL + G + ++G +GSGKST+ L+ Y P SG
Sbjct: 327 NVRFAYQDNAFHVGP-------INLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQSGE 379
Query: 894 VLIDGYDIRTLNLRSLRRKIGLVQQEPALFSTTIYENIKYGNEDASEIELMKATKAANAH 953
+L+DG + L R+ V + LF + AS
Sbjct: 380 ILLDGKPVSAEQLEDYRKLFSAVFSDYHLFDQLL-----GPEGKASP---------QLIE 425
Query: 954 GFISRMPEGYQSHVGDRGV---QLSGGQKQRVAIARAILKNPSILLLDEATSALDTASEN 1010
++ R+ +++ + D +LS GQK+R+A+ A+L+ IL+LDE + D A
Sbjct: 426 KWLQRLELAHKTSLNDGRFSNLKLSTGQKKRLALLLALLEERDILVLDEWAADQDPAFRR 485
Query: 1011 LIQEALDKLME--GRTTIMVAHRLSTIRNADKIAVLQQGKVAE 1051
+ L L++ G+T ++H +AD++ ++ G+++E
Sbjct: 486 EFYQVLLPLLKEQGKTIFAISHDDHYFIHADRLLEMRNGQLSE 528
|
Length = 546 |
| >gnl|CDD|226646 COG4178, COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 78.5 bits (194), Expect = 9e-15
Identities = 64/270 (23%), Positives = 105/270 (38%), Gaps = 33/270 (12%)
Query: 141 GGKAFTTIINVIFSGFALGQAAPNLAAIAKGKAAAANIISI---IKENSHSSERPGDDGI 197
AF + + +L N AIA +A + ++ +E+P G
Sbjct: 328 AVGAFGQVHS------SLSWFIDNYDAIADWRATLLRLAEFRQALEAAQMDTEKPARTGR 381
Query: 198 TLPKLA---GQIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQ 254
+ I + P + LNF V G+ G SG+GK++++ +
Sbjct: 382 RIDFDDNADHGITLENLSLRTPDG-QTLLSELNFEVRPGERLLITGESGAGKTSLLRALA 440
Query: 255 RLYEPTSGKILL-DGHDLKSLQLKWLREQMGLVSQEPALFATSIANNIL--LGKEDASMD 311
L+ SG+I + L + Q P L ++ + D S
Sbjct: 441 GLWPWGSGRISMPADSALL------------FLPQRPYLPQGTLREALCYPNAAPDFSDA 488
Query: 312 RVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEAT 371
++ E L + LSGG++QR+A AR +L PK + LDEAT
Sbjct: 489 ELVAVLHKVGLGDLAERLDE-----EDRWDRVLSGGEQQRLAFARLLLHKPKWVFLDEAT 543
Query: 372 SALDAESELIVQRALEKIMSNRTTIVVAHR 401
SALD E+E + + L++ + + T I V HR
Sbjct: 544 SALDEETEDRLYQLLKEELPDATVISVGHR 573
|
Length = 604 |
| >gnl|CDD|226622 COG4138, BtuD, ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 74.5 bits (183), Expect = 1e-14
Identities = 59/208 (28%), Positives = 100/208 (48%), Gaps = 21/208 (10%)
Query: 226 LNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWL-REQMG 284
L+ V AG+ VGP+G+GKST+++ + + SG I G L++ L R +
Sbjct: 18 LSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGSGSIQFAGQPLEAWSATELARHRAY 76
Query: 285 LVSQEPALFATSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQL 344
L Q+ FA + + + L + D + N + L D ++G QL
Sbjct: 77 LSQQQTPPFAMPVWHYLTLHQPDK------TRTELLNDVAGALALDD----KLGRSTNQL 126
Query: 345 SGGQKQRIAIARAVLR-----NP--KILLLDEATSALDAESELIVQRALEKI-MSNRTTI 396
SGG+ QR+ +A VL+ NP ++LLLDE ++LD + + R L + +
Sbjct: 127 SGGEWQRVRLAAVVLQITPDANPAGQLLLLDEPMNSLDVAQQSALDRLLSALCQQGLAIV 186
Query: 397 VVAHRLS-TVRDVDTIMVLKNGQVVESG 423
+ +H L+ T+R +LK G+++ SG
Sbjct: 187 MSSHDLNHTLRHAHRAWLLKRGKLLASG 214
|
Length = 248 |
| >gnl|CDD|188208 TIGR02323, CP_lyasePhnK, phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Score = 74.9 bits (184), Expect = 1e-14
Identities = 57/220 (25%), Positives = 97/220 (44%), Gaps = 26/220 (11%)
Query: 223 FENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQL------ 276
+++F + G+ VG SGSGKST++ + P G L+L
Sbjct: 19 CRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEA 78
Query: 277 ---KWLREQMGLVSQEPA---LFATSIANNI---LLGKEDASMDRVIEAAKAANAHSFVE 327
+ +R + G V Q P S NI L+ + A A ++E
Sbjct: 79 ERRRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARHYGNI-----RATAQDWLE 133
Query: 328 GLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESE---LIVQR 384
+ + T++ + SGG +QR+ IAR ++ P+++ +DE T LD + L + R
Sbjct: 134 EV-EIDPTRIDDLPRAFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLR 192
Query: 385 ALEKIMSNRTTIVVAHRLSTVRDV-DTIMVLKNGQVVESG 423
L + + I+V H L R + ++V++ G+VVESG
Sbjct: 193 GLVRDL-GLAVIIVTHDLGVARLLAQRLLVMQQGRVVESG 231
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se [Central intermediary metabolism, Phosphorus compounds]. Length = 253 |
| >gnl|CDD|226592 COG4107, PhnK, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 75.2 bits (185), Expect = 1e-14
Identities = 63/237 (26%), Positives = 104/237 (43%), Gaps = 28/237 (11%)
Query: 206 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKIL 265
+ S + Y +++F + G+ VG SGSGK+T++ + P +G +
Sbjct: 7 LSVSGLSKLYGPG--KGCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAGTVT 64
Query: 266 LDGHDLKSLQL---------KWLREQMGLVSQEPA---LFATSIANNI---LLGKEDASM 310
D + L + LR + G V Q P S NI L+
Sbjct: 65 YRMRDGQPRDLYTMSEAERRRLLRTEWGFVHQNPRDGLRMQVSAGGNIGERLMAIGARHY 124
Query: 311 DRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEA 370
+ A+A + VE D ++ + SGG +QR+ IAR ++ P+++ +DE
Sbjct: 125 GNI--RAEAQDWLEEVEIDLD----RIDDLPRTFSGGMQQRLQIARNLVTRPRLVFMDEP 178
Query: 371 TSALDAESE---LIVQRALEKIMSNRTTIVVAHRLSTVRDV-DTIMVLKNGQVVESG 423
T LD + L + R L + + ++V H L+ R + D +MV+K GQVVESG
Sbjct: 179 TGGLDVSVQARLLDLLRGLVREL-GLAVVIVTHDLAVARLLADRLMVMKQGQVVESG 234
|
Length = 258 |
| >gnl|CDD|183280 PRK11701, phnK, phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Score = 75.0 bits (185), Expect = 1e-14
Identities = 66/246 (26%), Positives = 113/246 (45%), Gaps = 46/246 (18%)
Query: 853 FENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSL--- 909
+++ + G L +VG+SGSGK+T+++ + P +G V D + +L +L
Sbjct: 22 CRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEA 81
Query: 910 -RRKI-----GLVQQEPA---LFSTTIYENI----------KYGNEDASEIELMKATKAA 950
RR++ G V Q P + NI YG+ ++AT
Sbjct: 82 ERRRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGD--------IRAT--- 130
Query: 951 NAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASEN 1010
A ++ R+ E + + D SGG +QR+ IAR ++ +P ++ +DE T LD +
Sbjct: 131 -AGDWLERV-EIDAARIDDLPTTFSGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVS--- 185
Query: 1011 LIQEALDKLMEGRTT------IMVAHRLSTIRN-ADKIAVLQQGKVAEIGSHEQLLRKEN 1063
+Q L L+ G ++V H L+ R A ++ V++QG+V E G +Q+L
Sbjct: 186 -VQARLLDLLRGLVRELGLAVVIVTHDLAVARLLAHRLLVMKQGRVVESGLTDQVLDDPQ 244
Query: 1064 GIYKQL 1069
Y QL
Sbjct: 245 HPYTQL 250
|
Length = 258 |
| >gnl|CDD|184198 PRK13638, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 75.0 bits (184), Expect = 1e-14
Identities = 71/254 (27%), Positives = 110/254 (43%), Gaps = 32/254 (12%)
Query: 209 SEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDG 268
S++ F Y P + NL+FS+ VG +G GKST+ + L P G +L G
Sbjct: 5 SDLWFRYQDEPVLKGLNLDFSLSP--VTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQG 62
Query: 269 H--DLKSLQLKWLREQMGLVSQEP--ALFATSIANNILLG------KEDASMDRVIEAAK 318
D L LR+Q+ V Q+P +F T I ++I E RV EA
Sbjct: 63 KPLDYSKRGLLALRQQVATVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITRRVDEALT 122
Query: 319 AANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAES 378
+A F + LS GQK+R+AIA A++ + LLLDE T+ LD
Sbjct: 123 LVDAQHFRH-----------QPIQCLSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAG 171
Query: 379 ELIVQRALEKIMSN-RTTIVVAHRLSTVRDV-DTIMVLKNGQVVESGTHVDLISKGGEYA 436
+ + +I++ I+ +H + + ++ D + VL+ GQ++ G GE
Sbjct: 172 RTQMIAIIRRIVAQGNHVIISSHDIDLIYEISDAVYVLRQGQILTHG-------APGEVF 224
Query: 437 ALVNLQSSEHLSNP 450
A L+ P
Sbjct: 225 ACTEAMEQAGLTQP 238
|
Length = 271 |
| >gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 77.6 bits (191), Expect = 2e-14
Identities = 70/227 (30%), Positives = 110/227 (48%), Gaps = 41/227 (18%)
Query: 220 HMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSL---QL 276
H V E ++F + G+T + VG SGSGKST + RL E G+I+ +G + +L +L
Sbjct: 338 HAV-EKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTLSPGKL 396
Query: 277 KWLREQMGLVSQEPALFAT-----SIANNIL-------LGKEDASMDRVIEAAKAANAHS 324
+ LR + + Q+P +A+ ++ ++I+ L A+ RV +
Sbjct: 397 QALRRDIQFIFQDP--YASLDPRQTVGDSIMEPLRVHGLLPGKAAAARVAWLLER----- 449
Query: 325 FVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESE----- 379
V LP+ E SGGQ+QRI IARA+ NPK+++ DEA SALD
Sbjct: 450 -VGLLPEHAWRYPHE----FSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIIN 504
Query: 380 --LIVQRALEKIMSNRTTIVVAHRLSTV-RDVDTIMVLKNGQVVESG 423
L +QR + ++H ++ V R + V+ GQ+VE G
Sbjct: 505 LLLDLQRDF-----GIAYLFISHDMAVVERISHRVAVMYLGQIVEIG 546
|
Length = 623 |
| >gnl|CDD|182993 PRK11144, modC, molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 75.7 bits (187), Expect = 2e-14
Identities = 66/218 (30%), Positives = 109/218 (50%), Gaps = 37/218 (16%)
Query: 225 NLNFSVDA-----GKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLK-W 278
+L +V+ G T A G SG+GK+++I+ + L P G+I+L+G L +
Sbjct: 12 DLCLTVNLTLPAQGIT-AIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGIC 70
Query: 279 L---REQMGLVSQEPALFA-TSIANNILLG---KEDASMDRVIEAAKAANAHSFVEGLPD 331
L + ++G V Q+ LF + N+ G A D+++ +E L D
Sbjct: 71 LPPEKRRIGYVFQDARLFPHYKVRGNLRYGMAKSMVAQFDKIVALLG-------IEPLLD 123
Query: 332 GYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDA--ESELI--VQRALE 387
Y LSGG+KQR+AI RA+L P++LL+DE ++LD + EL+ ++R
Sbjct: 124 RYPGS-------LSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKRELLPYLERLAR 176
Query: 388 KIMSNRTTIV-VAHRLSTV-RDVDTIMVLKNGQVVESG 423
+I I+ V+H L + R D ++VL+ G+V G
Sbjct: 177 EI---NIPILYVSHSLDEILRLADRVVVLEQGKVKAFG 211
|
Length = 352 |
| >gnl|CDD|215558 PLN03073, PLN03073, ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Score = 77.6 bits (191), Expect = 2e-14
Identities = 62/183 (33%), Positives = 94/183 (51%), Gaps = 28/183 (15%)
Query: 206 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKIL 265
I FS+ F YP P ++F+NLNF +D A VGP+G GKSTI+ ++ +P+SG +
Sbjct: 509 ISFSDASFGYPGGP-LLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTV- 566
Query: 266 LDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNILLGKEDASMDR----VIEAAKAAN 321
+S +++ M + SQ + +++N LL M R V E A+
Sbjct: 567 -----FRSAKVR-----MAVFSQH-HVDGLDLSSNPLL-----YMMRCFPGVPEQKLRAH 610
Query: 322 AHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAES-EL 380
SF G+ Q LSGGQK R+A A+ + P ILLLDE ++ LD ++ E
Sbjct: 611 LGSF--GVTGNLALQ---PMYTLSGGQKSRVAFAKITFKKPHILLLDEPSNHLDLDAVEA 665
Query: 381 IVQ 383
++Q
Sbjct: 666 LIQ 668
|
Length = 718 |
| >gnl|CDD|233305 TIGR01189, ccmA, heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Score = 72.8 bits (179), Expect = 2e-14
Identities = 54/193 (27%), Positives = 83/193 (43%), Gaps = 24/193 (12%)
Query: 846 VRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLN 905
R + +FE L+ ++AG +L V G +G GK+T++ ++ P SG V +G +
Sbjct: 9 SRGERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQR 68
Query: 906 LRSLRRKIGLVQQEPALFST-TIYENIKYGNEDASEIELMKATKAANAHGFISRMPEGYQ 964
R I + P L + EN+ + HG R E
Sbjct: 69 -DEPHRNILYLGHLPGLKPELSALENLHFWAAI---------------HGGAQRTIEDAL 112
Query: 965 SHVGDRGV------QLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDK 1018
+ VG G QLS GQ++R+A+AR L + +LDE T+ALD A L+ L
Sbjct: 113 AAVGLTGFEDLPAAQLSAGQQRRLALARLWLSRAPLWILDEPTTALDKAGVALLAGLLRA 172
Query: 1019 -LMEGRTTIMVAH 1030
L G ++ H
Sbjct: 173 HLARGGIVLLTTH 185
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other]. Length = 198 |
| >gnl|CDD|213190 cd03223, ABCD_peroxisomal_ALDP, ATP-binding cassette domain of peroxisomal transporter, subfamily D | Back alignment and domain information |
|---|
Score = 72.2 bits (178), Expect = 2e-14
Identities = 29/58 (50%), Positives = 38/58 (65%), Gaps = 2/58 (3%)
Query: 974 LSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLMEGRTTIMVAHR 1031
LSGG++QR+A AR +L P + LDEATSALD SE+ + + L + G T I V HR
Sbjct: 92 LSGGEQQRLAFARLLLHKPKFVFLDEATSALDEESEDRLYQLLKE--LGITVISVGHR 147
|
Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asymptomatic). Length = 166 |
| >gnl|CDD|215634 PLN03211, PLN03211, ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Score = 77.2 bits (190), Expect = 2e-14
Identities = 68/209 (32%), Positives = 109/209 (52%), Gaps = 17/209 (8%)
Query: 851 TIFENLNLKVSAGRSLAVVGQSGSGKSTVI-SLVMRFY-DPISGTVLIDGYDIRTLNLRS 908
TI + S G LAV+G SGSGKST++ +L R + +GT+L + R +
Sbjct: 82 TILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANN---RKPTKQI 138
Query: 909 LRRKIGLVQQEPALFS-TTIYENIKYGNEDASEIELMKATKAANAHGFISRM--PEGYQS 965
L+R G V Q+ L+ T+ E + + + L K K A IS + + +
Sbjct: 139 LKR-TGFVTQDDILYPHLTVRETLVFCSLLRLPKSLTKQEKILVAESVISELGLTKCENT 197
Query: 966 HVGD---RGVQLSGGQKQRVAIARAILKNPSILLLDEATSALD-TASENLIQEALDKLME 1021
+G+ RG+ SGG+++RV+IA +L NPS+L+LDE TS LD TA+ L+ +
Sbjct: 198 IIGNSFIRGI--SGGERKRVSIAHEMLINPSLLILDEPTSGLDATAAYRLVLTLGSLAQK 255
Query: 1022 GRTTIMVAHRLST--IRNADKIAVLQQGK 1048
G+T + H+ S+ + D + VL +G+
Sbjct: 256 GKTIVTSMHQPSSRVYQMFDSVLVLSEGR 284
|
Length = 659 |
| >gnl|CDD|182336 PRK10253, PRK10253, iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 73.9 bits (181), Expect = 3e-14
Identities = 61/228 (26%), Positives = 102/228 (44%), Gaps = 31/228 (13%)
Query: 220 HMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWL 279
+ V ENL + G A +GP+G GKST++ + RL P G + LDG ++ K +
Sbjct: 20 YTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEV 79
Query: 280 REQMGLVSQEPALFATSIANNILLG--------------KEDASMDRVIEAAKAANAHSF 325
++GL++Q A I L+ KED + V +A +A
Sbjct: 80 ARRIGLLAQN-ATTPGDITVQELVARGRYPHQPLFTRWRKEDE--EAVTKAMQAT----- 131
Query: 326 VEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRA 385
G + LSGGQ+QR IA + + I+LLDE T+ LD ++ +
Sbjct: 132 ------GITHLADQSVDTLSGGQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQIDLLEL 185
Query: 386 LEKIMSNR--TTIVVAHRLS-TVRDVDTIMVLKNGQVVESGTHVDLIS 430
L ++ + T V H L+ R ++ L+ G++V G ++++
Sbjct: 186 LSELNREKGYTLAAVLHDLNQACRYASHLIALREGKIVAQGAPKEIVT 233
|
Length = 265 |
| >gnl|CDD|213198 cd03231, ABC_CcmA_heme_exporter, Cytochrome c biogenesis ATP-binding export protein | Back alignment and domain information |
|---|
Score = 72.1 bits (177), Expect = 3e-14
Identities = 55/187 (29%), Positives = 97/187 (51%), Gaps = 16/187 (8%)
Query: 847 RPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNL 906
R +F L+ ++AG +L V G +GSGK+T++ ++ P++G VL++G +
Sbjct: 10 RDGRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQR- 68
Query: 907 RSLRRKIGLVQQEPALFST-TIYENIKYGNEDASEIELMKATKAANAHGFISRMPEGYQS 965
S+ R + + P + +T ++ EN+++ + D S+ ++ +A +GF
Sbjct: 69 DSIARGLLYLGHAPGIKTTLSVLENLRFWHADHSDEQVEEALARVGLNGF---------- 118
Query: 966 HVGDRGV-QLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEAL-DKLMEGR 1023
DR V QLS GQ++RVA+AR +L + +LDE T+ALD A EA+ G
Sbjct: 119 --EDRPVAQLSAGQQRRVALARLLLSGRPLWILDEPTTALDKAGVARFAEAMAGHCARGG 176
Query: 1024 TTIMVAH 1030
++ H
Sbjct: 177 MVVLTTH 183
|
CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperon that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. Length = 201 |
| >gnl|CDD|213182 cd03215, ABC_Carb_Monos_II, Second domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 72.1 bits (178), Expect = 3e-14
Identities = 45/207 (21%), Positives = 86/207 (41%), Gaps = 44/207 (21%)
Query: 220 HMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQ-LKW 278
+++F V AG+ G G+G++ + + L P SG+I LDG +
Sbjct: 13 KGAVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDA 72
Query: 279 LREQMGLVSQEP---ALFAT-SIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQ 334
+R + V ++ L S+A NI L
Sbjct: 73 IRAGIAYVPEDRKREGLVLDLSVAENIALS------------------------------ 102
Query: 335 TQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAES-ELIVQRALEKIMSNR 393
+ LSGG +Q++ +AR + R+P++L+LDE T +D + I + E + +
Sbjct: 103 -------SLLSGGNQQKVVLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELADAGK 155
Query: 394 TTIVVAHRLSTVRDV-DTIMVLKNGQV 419
++++ L + + D I+V+ G++
Sbjct: 156 AVLLISSELDELLGLCDRILVMYEGRI 182
|
This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 182 |
| >gnl|CDD|188317 TIGR03415, ABC_choXWV_ATP, choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 75.6 bits (186), Expect = 3e-14
Identities = 64/220 (29%), Positives = 107/220 (48%), Gaps = 31/220 (14%)
Query: 224 ENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILL---DGH-DLKSL---QL 276
N + ++ G+ +G SGSGKST++ V L + G +L+ DG D+ + L
Sbjct: 41 HNASLDIEEGEICVLMGLSGSGKSTLLRAVNGLNPVSRGSVLVKDGDGSVDVANCDAATL 100
Query: 277 KWLR-EQMGLVSQEPALFA-TSIANNILLGKEDASMDRVIEAAKAANAHSFVE--GLPDG 332
+ LR ++ +V Q+ AL ++ N+ G E M + +A + +E GL
Sbjct: 101 RRLRTHRVSMVFQQFALLPWRTVEENVAFGLE---MQGMPKAERRKRVDEQLELVGLAQW 157
Query: 333 YQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDA------ESELI-VQRA 385
+ GE LSGG +QR+ +ARA ILL+DE SALD + EL+ +Q
Sbjct: 158 ADRKPGE----LSGGMQQRVGLARAFATEAPILLMDEPFSALDPLIRTQLQDELLELQSK 213
Query: 386 LEKIMSNRTTIVVAHRLSTVRDVDT-IMVLKNGQVVESGT 424
L +T + V+H L + I +++ G++++ GT
Sbjct: 214 L-----KKTIVFVSHDLDEALKIGNRIAIMEGGRIIQHGT 248
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines [Transport and binding proteins, Amino acids, peptides and amines]. Length = 382 |
| >gnl|CDD|213190 cd03223, ABCD_peroxisomal_ALDP, ATP-binding cassette domain of peroxisomal transporter, subfamily D | Back alignment and domain information |
|---|
Score = 71.4 bits (176), Expect = 3e-14
Identities = 29/59 (49%), Positives = 38/59 (64%), Gaps = 4/59 (6%)
Query: 344 LSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIV-VAHR 401
LSGG++QR+A AR +L PK + LDEATSALD ESE R + + T++ V HR
Sbjct: 92 LSGGEQQRLAFARLLLHKPKFVFLDEATSALDEESE---DRLYQLLKELGITVISVGHR 147
|
Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asymptomatic). Length = 166 |
| >gnl|CDD|227118 COG4778, PhnL, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 72.8 bits (179), Expect = 3e-14
Identities = 58/178 (32%), Positives = 90/178 (50%), Gaps = 29/178 (16%)
Query: 222 VFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILL----DGHDLKSLQ-- 275
V N++ SV+AG+ GPSGSGKST++ + Y P G+IL+ + DL + +
Sbjct: 26 VLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHEGEWVDLVTAEPR 85
Query: 276 --LKWLREQMGLVSQ----EPALFATSIANNILLGKEDASMDRVIEAAKAANAHSFVEGL 329
L+ R +G VSQ P + A + LL + + R + AKAA+ +
Sbjct: 86 EVLEVRRTTIGYVSQFLRVIPRVSALDVVAEPLLAR---GVPREVARAKAADLLT----- 137
Query: 330 PDGYQTQVGEGGTQL-----SGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIV 382
+ + E L SGG++QR+ IAR + + ILLLDE T++LDA + +V
Sbjct: 138 ----RLNLPERLWSLAPATFSGGEQQRVNIARGFIVDYPILLLDEPTASLDATNRAVV 191
|
Length = 235 |
| >gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 76.4 bits (188), Expect = 3e-14
Identities = 66/285 (23%), Positives = 135/285 (47%), Gaps = 36/285 (12%)
Query: 224 ENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQ- 282
+++N +V G+ A +G +G+GKST++ ++ ++EPT G I ++ + L K +
Sbjct: 22 KSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAAQLG 81
Query: 283 MGLVSQEPALF-ATSIANNILLG----KEDASMDRV--IEAAKAANAHSFVEGLPDGYQT 335
+G++ QE ++ ++ N+ +G K+ ++ + E A GL
Sbjct: 82 IGIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLDE 141
Query: 336 QVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSAL-DAESE--LIVQRALEKIMSN 392
+V LS KQ + IA+ ++ + K++++DE TS+L + E + ++ L K
Sbjct: 142 KVAN----LSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRK--EG 195
Query: 393 RTTIVVAHRLSTVRDV-DTIMVLKNGQVVESGTHVDLISKGGEYAALVNLQSSEHLSNPS 451
+ ++H+L+ +R + D V+K+G V SG D+ + +V L L N
Sbjct: 196 TAIVYISHKLAEIRRICDRYTVMKDGSSVCSGMVSDVSNDD-----IVRLMVGRELQN-- 248
Query: 452 SICYSGSSRYSSFRDFPSSRRYDVEFES---SKRRELQSSDQSFA 493
R+++ ++ S+ ++ FE + R + D SF+
Sbjct: 249 --------RFNAMKENVSNLAHETVFEVRNVTSRDRKKVRDISFS 285
|
Length = 510 |
| >gnl|CDD|233207 TIGR00955, 3a01204, The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Score = 76.6 bits (189), Expect = 4e-14
Identities = 57/218 (26%), Positives = 96/218 (44%), Gaps = 23/218 (10%)
Query: 233 GKTFAFVGPSGSGKSTIISMVQRLYEP---TSGKILLDGHDLKSLQLKWLREQMGLVSQE 289
G+ A +G SG+GK+T+++ + SG +LL+G + K +R V Q+
Sbjct: 51 GELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGM---PIDAKEMRAISAYVQQD 107
Query: 290 PALFATSIANNILLGKEDASMDRVIEAAKAANAHSFVE------GLPDGYQTQVGEGGTQ 343
T L+ + M R + + V+ GL T++G G
Sbjct: 108 DLFIPTLTVREHLMFQAHLRMPRRVTKKEKRER---VDEVLQALGLRKCANTRIGVPGRV 164
Query: 344 --LSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKI-MSNRTTIVVAH 400
LSGG+++R+A A +L +P +L DE TS LD+ V + L+ + +T I H
Sbjct: 165 KGLSGGERKRLAFASELLTDPPLLFCDEPTSGLDSFMAYSVVQVLKGLAQKGKTIICTIH 224
Query: 401 RLST--VRDVDTIMVLKNGQVVESGT---HVDLISKGG 433
+ S+ D I+++ G+V G+ V S G
Sbjct: 225 QPSSELFELFDKIILMAEGRVAYLGSPDQAVPFFSDLG 262
|
[Transport and binding proteins, Other]. Length = 617 |
| >gnl|CDD|181939 PRK09544, znuC, high-affinity zinc transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 73.2 bits (180), Expect = 4e-14
Identities = 59/233 (25%), Positives = 112/233 (48%), Gaps = 31/233 (13%)
Query: 222 VFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLRE 281
V +++ + GK +GP+G+GKST++ +V L P G I +G +L+
Sbjct: 19 VLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNG------KLR---- 68
Query: 282 QMGLVSQEPALFAT---SIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVG 338
+G V Q+ L T ++ + L D ++ A K A ++ Q
Sbjct: 69 -IGYVPQKLYLDTTLPLTVNRFLRLRPGTKKED-ILPALKRVQAGHLID-----APMQ-- 119
Query: 339 EGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMS--NRTTI 396
+LSGG+ QR+ +ARA+L P++L+LDE T +D ++ + ++++ + +
Sbjct: 120 ----KLSGGETQRVLLARALLNRPQLLVLDEPTQGVDVNGQVALYDLIDQLRRELDCAVL 175
Query: 397 VVAHRLSTVR-DVDTIMVLKNGQVVESGTHVDLISKGGEYAALVNLQSSEHLS 448
+V+H L V D ++ L N + SGT +++S E+ ++ + +E L
Sbjct: 176 MVSHDLHLVMAKTDEVLCL-NHHICCSGTP-EVVSLHPEFISMFGPRGAEQLG 226
|
Length = 251 |
| >gnl|CDD|132561 TIGR03522, GldA_ABC_ATP, gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Score = 74.0 bits (182), Expect = 4e-14
Identities = 48/206 (23%), Positives = 100/206 (48%), Gaps = 10/206 (4%)
Query: 222 VFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLRE 281
+ ++F G+ F+GP+G+GKST + ++ P SG + + G D+ + ++
Sbjct: 17 ALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQNPKE-VQR 75
Query: 282 QMGLVSQEPALFATSIANNILLGKEDASMDRVIEAAKAANAHSFVE--GLPDGYQTQVGE 339
+G + + L+ L + A + + +E GL ++G
Sbjct: 76 NIGYLPEHNPLYLDMYVREYL--QFIAGIYGMKGQLLKQRVEEMIELVGLRPEQHKKIG- 132
Query: 340 GGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVA 399
QLS G +QR+ +A+A++ +PK+L+LDE T+ LD + ++ ++ I ++T I+
Sbjct: 133 ---QLSKGYRQRVGLAQALIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIGKDKTIILST 189
Query: 400 HRLSTVRDV-DTIMVLKNGQVVESGT 424
H + V + D ++++ G++V
Sbjct: 190 HIMQEVEAICDRVIIINKGKIVADKK 215
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. Length = 301 |
| >gnl|CDD|226617 COG4133, CcmA, ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 71.9 bits (177), Expect = 4e-14
Identities = 44/169 (26%), Positives = 75/169 (44%), Gaps = 28/169 (16%)
Query: 221 MVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGH------DLKSL 274
+F +L+F+++AG+ GP+G+GK+T++ ++ L P +G++ G +
Sbjct: 16 TLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNVRESYHQ 75
Query: 275 QLKWLREQMGLVSQ----EPALFATSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLP 330
L +L Q G+ ++ E F + + EA GL
Sbjct: 76 ALLYLGHQPGIKTELTALENLHFWQRFHG-------SGNAATIWEALAQV-------GLA 121
Query: 331 DGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESE 379
VG QLS GQ++R+A+AR L + +LDE +ALD E
Sbjct: 122 GLEDLPVG----QLSAGQQRRVALARLWLSPAPLWILDEPFTALDKEGV 166
|
Length = 209 |
| >gnl|CDD|182906 PRK11022, dppD, dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 74.4 bits (183), Expect = 4e-14
Identities = 69/241 (28%), Positives = 114/241 (47%), Gaps = 33/241 (13%)
Query: 211 VCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKS----TIISMVQRLYEPTSGKILL 266
V F S P + +++SV G+ VG SGSGKS I+ ++ + K+
Sbjct: 11 VHFGDESAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEF 70
Query: 267 DGHDLKSLQLKWLREQMG----LVSQEPALFATSIANNILLGKEDASMDRVIEAAKAANA 322
+G DL+ + K R +G ++ Q+P TS+ +G + ++EA K
Sbjct: 71 NGQDLQRISEKERRNLVGAEVAMIFQDPM---TSLNPCYTVGFQ------IMEAIKVHQG 121
Query: 323 HSFVE------------GLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEA 370
+ G+PD +++ QLSGG QR+ IA A+ PK+L+ DE
Sbjct: 122 GNKKTRRQRAIDLLNQVGIPDP-ASRLDVYPHQLSGGMSQRVMIAMAIACRPKLLIADEP 180
Query: 371 TSALDAESEL-IVQRALE-KIMSNRTTIVVAHRLSTVRDV-DTIMVLKNGQVVESGTHVD 427
T+ALD + I++ LE + N +++ H L+ V + I+V+ GQVVE+G D
Sbjct: 181 TTALDVTIQAQIIELLLELQQKENMALVLITHDLALVAEAAHKIIVMYAGQVVETGKAHD 240
Query: 428 L 428
+
Sbjct: 241 I 241
|
Length = 326 |
| >gnl|CDD|183080 PRK11300, livG, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 72.3 bits (178), Expect = 7e-14
Identities = 64/223 (28%), Positives = 105/223 (47%), Gaps = 31/223 (13%)
Query: 225 NLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMG 284
N+N V + + +GP+G+GK+T+ + + Y+PT G ILL G ++ L +MG
Sbjct: 23 NVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLP-GHQIARMG 81
Query: 285 LVS--QEPALFA--TSIAN-----------NILLGKEDASMDRVIEAAKAANAHSFVE-- 327
+V Q LF T I N + G R E+ A +++E
Sbjct: 82 VVRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERV 141
Query: 328 GLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAE-----SELIV 382
GL + Q G L+ GQ++R+ IAR ++ P+IL+LDE + L+ + ELI
Sbjct: 142 GLLEHANRQAG----NLAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIA 197
Query: 383 QRALEKIMSNRTTIVVAHRLSTVRDV-DTIMVLKNGQVVESGT 424
+ E N T +++ H + V + D I V+ G + +GT
Sbjct: 198 ELRNE---HNVTVLLIEHDMKLVMGISDRIYVVNQGTPLANGT 237
|
Length = 255 |
| >gnl|CDD|182569 PRK10584, PRK10584, putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Score = 71.7 bits (176), Expect = 9e-14
Identities = 64/215 (29%), Positives = 103/215 (47%), Gaps = 24/215 (11%)
Query: 850 ITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLN---- 905
++I + L V G ++A++G+SGSGKST+++++ D SG V + G + ++
Sbjct: 23 LSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEAR 82
Query: 906 --LRSLRRKIGLVQQEPALFST-TIYENIKYGNEDASEIELMKATKAANAHGFISRMPEG 962
LR+ + +G V Q L T EN++ L++ + + + E
Sbjct: 83 AKLRA--KHVGFVFQSFMLIPTLNALENVELP-------ALLRGESSRQSRNGAKALLE- 132
Query: 963 YQSHVGDR----GVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDK 1018
Q +G R QLSGG++QRVA+ARA P +L DE T LD + + I + L
Sbjct: 133 -QLGLGKRLDHLPAQLSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFS 191
Query: 1019 LME--GRTTIMVAHRLSTIRNADKIAVLQQGKVAE 1051
L G T I+V H L D+ L G++ E
Sbjct: 192 LNREHGTTLILVTHDLQLAARCDRRLRLVNGQLQE 226
|
Length = 228 |
| >gnl|CDD|181888 PRK09473, oppD, oligopeptide transporter ATP-binding component; Provisional | Back alignment and domain information |
|---|
Score = 73.2 bits (180), Expect = 1e-13
Identities = 68/233 (29%), Positives = 112/233 (48%), Gaps = 54/233 (23%)
Query: 225 NLNFSVDAGKTFAFVGPSGSGKS-TIISMVQRLYEP--TSGKILLDGHDLKSL---QLKW 278
+LNFS+ AG+T VG SGSGKS T +++ L G +G ++ +L +L
Sbjct: 34 DLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEKELNK 93
Query: 279 LR-EQMGLVSQEPALFATS------IANNIL--------LGKEDASMD--RVIEAAKAAN 321
LR EQ+ ++ Q+P TS + ++ + K +A + R+++A K
Sbjct: 94 LRAEQISMIFQDPM---TSLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLDAVKMPE 150
Query: 322 AHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELI 381
A ++ P + SGG +QR+ IA A+L PK+L+ DE T+ALD +
Sbjct: 151 ARKRMKMYPH-----------EFSGGMRQRVMIAMALLCRPKLLIADEPTTALD----VT 195
Query: 382 VQRALEKIMS---------NRTTIVVAHRLSTVRDV-DTIMVLKNGQVVESGT 424
VQ +IM+ N I++ H L V + D ++V+ G+ +E G
Sbjct: 196 VQ---AQIMTLLNELKREFNTAIIMITHDLGVVAGICDKVLVMYAGRTMEYGN 245
|
Length = 330 |
| >gnl|CDD|181939 PRK09544, znuC, high-affinity zinc transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 71.7 bits (176), Expect = 1e-13
Identities = 55/206 (26%), Positives = 101/206 (49%), Gaps = 37/206 (17%)
Query: 835 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTV 894
+ L NVS + R + +++L++ G+ L ++G +G+GKST++ +V+ P G +
Sbjct: 5 VSLENVSVSFGQR---RVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVI 61
Query: 895 LIDGYDIRTLNLRSLRRKIGLVQQEPALFST---TI--YENIKYGNEDASEIELMKATKA 949
R+ + +IG V Q+ L +T T+ + ++ G + + +K +A
Sbjct: 62 K-----------RNGKLRIGYVPQKLYLDTTLPLTVNRFLRLRPGTKKEDILPALKRVQA 110
Query: 950 ANAHGFISRMPEGYQSHVGDRGVQ-LSGGQKQRVAIARAILKNPSILLLDEATSALDTAS 1008
H+ D +Q LSGG+ QRV +ARA+L P +L+LDE T +D
Sbjct: 111 G---------------HLIDAPMQKLSGGETQRVLLARALLNRPQLLVLDEPTQGVDVNG 155
Query: 1009 ENLIQEALDKLME--GRTTIMVAHRL 1032
+ + + +D+L +MV+H L
Sbjct: 156 QVALYDLIDQLRRELDCAVLMVSHDL 181
|
Length = 251 |
| >gnl|CDD|226952 COG4586, COG4586, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 72.8 bits (179), Expect = 2e-13
Identities = 56/235 (23%), Positives = 99/235 (42%), Gaps = 18/235 (7%)
Query: 833 GNIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISG 892
G N F R + ++++ ++ G + +G +G+GKST + ++ P SG
Sbjct: 21 GLKGSLNHFFHRKERSIEAV-QDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSG 79
Query: 893 TVLIDGYDIRTLNLRSLRRKIGLVQQEPALFSTTIYENIKYGNEDASEIELMKATKAANA 952
V ++G D R IGLV + + +E++K
Sbjct: 80 KVRVNGKDPF-RRREEYLRSIGLV--------MGQKLQLWWDLPALDSLEVLKLIYEIPD 130
Query: 953 HGFISRMPE-----GYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTA 1007
F R+ + + +LS GQ+ R +A A+L P +L LDE T LD
Sbjct: 131 DEFAERLDFLTEILDLEGFLKWPVRKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDVN 190
Query: 1008 SENLIQEALDKLMEGR-TTIMVA-HRLSTI-RNADKIAVLQQGKVAEIGSHEQLL 1059
++ I+E L + E R T+++ H I D++ ++ QG++ G+ QL
Sbjct: 191 AQANIREFLKEYNEERQATVLLTTHIFDDIATLCDRVLLIDQGQLVFDGTLAQLQ 245
|
Length = 325 |
| >gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Score = 74.2 bits (183), Expect = 2e-13
Identities = 63/236 (26%), Positives = 93/236 (39%), Gaps = 68/236 (28%)
Query: 837 LRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISG-TVL 895
+ VS P P I ++++L G + V+G +G+GKST++ ++ +G
Sbjct: 7 MNRVSKVVP--PKKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARP 64
Query: 896 IDGYDIRTLNLRSLRRKIGLVQQEPALFST-TIYENI-------------------KYGN 935
G K+G + QEP L T T+ EN+ K+
Sbjct: 65 APGI------------KVGYLPQEPQLDPTKTVRENVEEGVAEIKDALDRFNEISAKFAE 112
Query: 936 EDASEIELMK-------ATKAANAHGFIS---------RMPEGYQSHVGDRGVQ-LSGGQ 978
DA L+ AA+A R P D V LSGG+
Sbjct: 113 PDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDALRCPPW------DADVTKLSGGE 166
Query: 979 KQRVAIARAILKNPSILLLDEATSALDTAS----ENLIQEALDKLMEGRTTIMVAH 1030
++RVA+ R +L P +LLLDE T+ LD S E +QE G T + V H
Sbjct: 167 RRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQE-----YPG-TVVAVTH 216
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. Length = 552 |
| >gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 74.1 bits (182), Expect = 2e-13
Identities = 58/227 (25%), Positives = 104/227 (45%), Gaps = 23/227 (10%)
Query: 835 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFY--DPISG 892
+E++ + + + + ++L+V G + + G++G+GKST++ ++ Y G
Sbjct: 2 LEMKGIVKTFG---GVKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDG 58
Query: 893 TVLIDGYDIRTLNLRSLRRK-IGLVQQEPALF-STTIYENIKYGNEDASEIELMK-ATKA 949
+ G ++ N+R R I ++ QE L ++ ENI GNE M
Sbjct: 59 EIYWSGSPLKASNIRDTERAGIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMY 118
Query: 950 ANAHGF-----ISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSAL 1004
A + VGD G GGQ+Q V IA+A+ K +L+LDE +S+L
Sbjct: 119 LRAKNLLRELQLDADNV--TRPVGDYG----GGQQQLVEIAKALNKQARLLILDEPSSSL 172
Query: 1005 DTASEN--LIQEALDKLMEGRTTIMVAHRLSTIRN-ADKIAVLQQGK 1048
T E L+ D G + ++H+L+ ++ D I V++ G+
Sbjct: 173 -TEKETEILLDIIRDLKAHGVACVYISHKLNEVKAVCDTICVIRDGQ 218
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500 |
| >gnl|CDD|184125 PRK13538, PRK13538, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 70.2 bits (173), Expect = 2e-13
Identities = 42/169 (24%), Positives = 77/169 (45%), Gaps = 28/169 (16%)
Query: 220 HMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSL----- 274
++F L+F+++AG+ GP+G+GK++++ ++ L P +G++L G ++
Sbjct: 14 RILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQRDEYH 73
Query: 275 -QLKWLREQMG----LVSQEPALFATSIANNILLGKEDASMDRVIEAAKAANAHSFVEGL 329
L +L Q G L + E F + + + EA F E +
Sbjct: 74 QDLLYLGHQPGIKTELTALENLRFYQRLHG-------PGDDEALWEALAQVGLAGF-EDV 125
Query: 330 PDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAES 378
P QLS GQ++R+A+AR L + +LDE +A+D +
Sbjct: 126 PVR----------QLSAGQQRRVALARLWLTRAPLWILDEPFTAIDKQG 164
|
Length = 204 |
| >gnl|CDD|182182 PRK09984, PRK09984, phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 71.2 bits (174), Expect = 2e-13
Identities = 61/240 (25%), Positives = 119/240 (49%), Gaps = 24/240 (10%)
Query: 856 LNLKVSAGRSLAVVGQSGSGKSTVI----------SLVMRFYDPISGTVLIDGYDIRTLN 905
++L + G +A++G SGSGKST++ + + TV +G R +
Sbjct: 23 VDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLAR--D 80
Query: 906 LRSLRRKIGLVQQEPALFST-TIYENIKYGNEDASE-----IELMKATKAANAHGFISRM 959
+R R G + Q+ L + ++ EN+ G ++ + A ++R+
Sbjct: 81 IRKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRV 140
Query: 960 PEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKL 1019
+ +H R LSGGQ+QRVAIARA+++ ++L DE ++LD S ++ + L +
Sbjct: 141 GMVHFAH--QRVSTLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDI 198
Query: 1020 --MEGRTTIMVAHRLS-TIRNADKIAVLQQGKVAEIGSHEQLLRKE-NGIYKQLIRLQQD 1075
+G T ++ H++ +R ++I L+QG V GS +Q + + +Y+ + R++++
Sbjct: 199 NQNDGITVVVTLHQVDYALRYCERIVALRQGHVFYDGSSQQFDNERFDHLYRSINRVEEN 258
|
Length = 262 |
| >gnl|CDD|225265 COG2401, COG2401, ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only] | Back alignment and domain information |
|---|
Score = 74.1 bits (182), Expect = 2e-13
Identities = 56/213 (26%), Positives = 99/213 (46%), Gaps = 36/213 (16%)
Query: 851 TIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRF--------YDPISGTVLIDGYDIR 902
+ NLNL++ G +AVVGQSG+GK+T++ +++ Y P SG V + +
Sbjct: 397 YVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKNTVS 456
Query: 903 TLNLRSLRRKIGLVQQEPALFSTTIYENI--KYGNEDASEIELMKATKAANAHGFISRMP 960
L EP TI E++ K G+ +A+ E++ ++A + +
Sbjct: 457 ALIPGEY---------EPEFGEVTILEHLRSKTGDLNAAV-EILNRAGLSDAVLYRRKFS 506
Query: 961 EGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKL- 1019
E LS GQK+R +A+ + + P++LL+DE + LD + + + +L
Sbjct: 507 E------------LSTGQKERAKLAKLLAERPNVLLIDEFAAHLDELTAVRVARKISELA 554
Query: 1020 MEGRTTIMVAHRLSTIRNA---DKIAVLQQGKV 1049
E T++V + NA D + ++ GKV
Sbjct: 555 REAGITLIVVTHRPEVGNALRPDTLILVGYGKV 587
|
Length = 593 |
| >gnl|CDD|226617 COG4133, CcmA, ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 69.6 bits (171), Expect = 3e-13
Identities = 48/188 (25%), Positives = 86/188 (45%), Gaps = 27/188 (14%)
Query: 847 RPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNL 906
R + T+F +L+ ++AG +L + G +G+GK+T++ ++ P +G V G I+ +
Sbjct: 12 RGERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNVR- 70
Query: 907 RSLRRKIGLVQQEPALFST-TIYENIKYGNE---DASEIELMKATKAANAHGFISRMPEG 962
S + + + +P + + T EN+ + + + +A G +P G
Sbjct: 71 ESYHQALLYLGHQPGIKTELTALENLHFWQRFHGSGNAATIWEALAQVGLAGLED-LPVG 129
Query: 963 YQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLMEG 1022
QLS GQ++RVA+AR L + +LDE +ALD L+
Sbjct: 130 ----------QLSAGQQRRVALARLWLSPAPLWILDEPFTALDKEGVALL---------- 169
Query: 1023 RTTIMVAH 1030
T +M AH
Sbjct: 170 -TALMAAH 176
|
Length = 209 |
| >gnl|CDD|182182 PRK09984, PRK09984, phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 70.4 bits (172), Expect = 5e-13
Identities = 64/225 (28%), Positives = 108/225 (48%), Gaps = 25/225 (11%)
Query: 220 HMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLY---EPTSGKILLDGHDLK---- 272
H ++ ++ G+ A +GPSGSGKST++ + L + I L G ++
Sbjct: 17 HQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGR 76
Query: 273 -SLQLKWLREQMGLVSQEPALF-ATSIANNILLG--------KEDASMDRVIEAAKAANA 322
+ ++ R G + Q+ L S+ N+L+G + S + +A A
Sbjct: 77 LARDIRKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQA 136
Query: 323 HSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIV 382
+ V G+ +V + LSGGQ+QR+AIARA+++ K++L DE ++LD ES IV
Sbjct: 137 LTRV-GMVHFAHQRV----STLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIV 191
Query: 383 QRALEKIMSNR--TTIVVAHRLS-TVRDVDTIMVLKNGQVVESGT 424
L I N T +V H++ +R + I+ L+ G V G+
Sbjct: 192 MDTLRDINQNDGITVVVTLHQVDYALRYCERIVALRQGHVFYDGS 236
|
Length = 262 |
| >gnl|CDD|213234 cd03267, ABC_NatA_like, ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA | Back alignment and domain information |
|---|
Score = 69.3 bits (170), Expect = 5e-13
Identities = 54/209 (25%), Positives = 104/209 (49%), Gaps = 21/209 (10%)
Query: 225 NLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMG 284
++F+++ G+ F+GP+G+GK+T + ++ L +PTSG++ + G + K+LR ++G
Sbjct: 39 GISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKRRKKFLR-RIG 97
Query: 285 LV--SQEPALFATSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDG--YQTQVGEG 340
+V + + + ++ L + + A E L T V
Sbjct: 98 VVFGQKTQLWWDLPVIDSFYLLAA---IYDLPPARFKKRLDELSELLDLEELLDTPV--- 151
Query: 341 GTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAH 400
QLS GQ+ R IA A+L P+IL LDE T LD ++ ++ L++ R T V+
Sbjct: 152 -RQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQENIRNFLKEYNRERGTTVL-- 208
Query: 401 RLST--VRDV----DTIMVLKNGQVVESG 423
L++ ++D+ ++V+ G+++ G
Sbjct: 209 -LTSHYMKDIEALARRVLVIDKGRLLYDG 236
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein. Length = 236 |
| >gnl|CDD|226968 COG4615, PvdE, ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 72.5 bits (178), Expect = 6e-13
Identities = 92/407 (22%), Positives = 166/407 (40%), Gaps = 42/407 (10%)
Query: 29 LLTLAVVPLIAVAGGAYTIT-----MSTLSEKGEAAYGEAGKVA----EEIISQVRAVYA 79
L V ++ + GG + M+ E + + + E +++ RA Y
Sbjct: 150 FLLTVVWIVVTIWGGFVLMARVYKHMAAARETEDKLQNDYQTILEGRKELTLNRERAEYV 209
Query: 80 FVGEAKAIESYSHSLKEALKQGKKSGVAKGIGVGLTYGLLFCAWALLLWYAGILVRHGDT 139
Y +E ++ + V + +L L+ W A + + T
Sbjct: 210 HNNL------YIPDAQEYRHHIIRANTFHLLAVNWSNIMLLGLIGLVFWLA-LSLGWAST 262
Query: 140 NGGKAFTTIINVIFSGFALGQAAPNLAAIAKGKAAAANIISIIKENSHSSERPGDDGITL 199
N A T ++ ++F L A L + + A N I+ ++ + ++ P
Sbjct: 263 N--VAATIVLVLLFLRTPLLSAVGILPTLLTAQVAF-NKIAKLELAPYKADFPRPQAF-- 317
Query: 200 PKLAGQIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEP 259
P +E V FAY V +N ++ G+ +G +GSGKST+ ++ LY+P
Sbjct: 318 PDWKT-LELRNVRFAYQDNAFHV-GPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQP 375
Query: 260 TSGKILLDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNILLGKEDASMDRVIEAAKA 319
SG+ILLDG + + QL+ R+ V + LF LLG E A
Sbjct: 376 QSGEILLDGKPVSAEQLEDYRKLFSAVFSDYHLFDQ------LLGPE--------GKASP 421
Query: 320 ANAHSFVEGLPDGYQTQVGEGG---TQLSGGQKQRIAIARAVLRNPKILLLDEATSALDA 376
+++ L ++T + +G +LS GQK+R+A+ A+L IL+LDE + D
Sbjct: 422 QLIEKWLQRLELAHKTSLNDGRFSNLKLSTGQKKRLALLLALLEERDILVLDEWAADQDP 481
Query: 377 ESELIVQRALEKIMS--NRTTIVVAHRLSTVRDVDTIMVLKNGQVVE 421
+ L ++ +T ++H D ++ ++NGQ+ E
Sbjct: 482 AFRREFYQVLLPLLKEQGKTIFAISHDDHYFIHADRLLEMRNGQLSE 528
|
Length = 546 |
| >gnl|CDD|227019 COG4674, COG4674, Uncharacterized ABC-type transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 69.3 bits (170), Expect = 7e-13
Identities = 62/221 (28%), Positives = 98/221 (44%), Gaps = 27/221 (12%)
Query: 855 NLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGY-DIRTLN-LRSLRRK 912
+L+ V G ++G +G+GK+T++ ++ P G VL DG D+ L R R
Sbjct: 23 DLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLPEHRIARAG 82
Query: 913 IGLVQQEPALF-STTIYENIKYGNEDASEIEL-MKATKAANAHGFISRMPE--------- 961
IG Q+P +F + T+ EN +EL + K+ A F E
Sbjct: 83 IGRKFQKPTVFENLTVREN----------LELALNRDKSVFASLFARLRAEERRRIDELL 132
Query: 962 ---GYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDK 1018
G LS GQKQ + I + ++P +LLLDE + + A E L
Sbjct: 133 ATIGLGDERDRLAALLSHGQKQWLEIGMLLAQDPKLLLLDEPVAGMTDAETEKTAELLKS 192
Query: 1019 LMEGRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGSHEQL 1058
L + ++V H + +R ADK+ VL +G V GS +++
Sbjct: 193 LAGKHSILVVEHDMGFVREIADKVTVLHEGSVLAEGSLDEV 233
|
Length = 249 |
| >gnl|CDD|236688 PRK10418, nikD, nickel transporter ATP-binding protein NikD; Provisional | Back alignment and domain information |
|---|
Score = 69.3 bits (170), Expect = 8e-13
Identities = 57/222 (25%), Positives = 100/222 (45%), Gaps = 30/222 (13%)
Query: 219 PHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEP----TSGKILLDGHDLKSL 274
+ ++ ++ G+ A VG SGSGKS + + T+G++LLDG +
Sbjct: 15 AQPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPC 74
Query: 275 QLKWLREQMGLVSQEP--------ALFATSIANNILLGKE--DASMDRVIEAAKAANAHS 324
L+ ++ + Q P + + + LGK DA++ +EA NA
Sbjct: 75 ALR--GRKIATIMQNPRSAFNPLHTMHTHARETCLALGKPADDATLTAALEAVGLENAAR 132
Query: 325 FVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQR 384
++ P ++SGG QR+ IA A+L ++ DE T+ LD ++ +
Sbjct: 133 VLKLYP-----------FEMSGGMLQRMMIALALLCEAPFIIADEPTTDLDVVAQARILD 181
Query: 385 ALEKIMSNRT--TIVVAHRLSTV-RDVDTIMVLKNGQVVESG 423
LE I+ R ++V H + V R D + V+ +G++VE G
Sbjct: 182 LLESIVQKRALGMLLVTHDMGVVARLADDVAVMSHGRIVEQG 223
|
Length = 254 |
| >gnl|CDD|182906 PRK11022, dppD, dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 70.5 bits (173), Expect = 8e-13
Identities = 72/245 (29%), Positives = 109/245 (44%), Gaps = 40/245 (16%)
Query: 854 ENLNLKVSAGRSLAVVGQSGSGKSTVISL-VMRFYDPISGTVL-----IDGYDIRTLNLR 907
+ ++ V G + +VG+SGSGKS V SL +M D G V+ +G D++ ++ +
Sbjct: 24 DRISYSVKQGEVVGIVGESGSGKS-VSSLAIMGLID-YPGRVMAEKLEFNGQDLQRISEK 81
Query: 908 SLRRKIG----LVQQEPAL-------FSTTIYENIKY---GNEDASE---IELMKATKAA 950
R +G ++ Q+P I E IK GN+ I+L+
Sbjct: 82 ERRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIP 141
Query: 951 NAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASEN 1010
+ + P QLSGG QRV IA AI P +L+ DE T+ALD +
Sbjct: 142 DPASRLDVYPH-----------QLSGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQA 190
Query: 1011 LIQEALDKLM--EGRTTIMVAHRLSTI-RNADKIAVLQQGKVAEIGSHEQLLRKENGIYK 1067
I E L +L E +++ H L+ + A KI V+ G+V E G + R Y
Sbjct: 191 QIIELLLELQQKENMALVLITHDLALVAEAAHKIIVMYAGQVVETGKAHDIFRAPRHPYT 250
Query: 1068 Q-LIR 1071
Q L+R
Sbjct: 251 QALLR 255
|
Length = 326 |
| >gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Score = 71.6 bits (176), Expect = 1e-12
Identities = 67/239 (28%), Positives = 115/239 (48%), Gaps = 20/239 (8%)
Query: 826 KEVTEIKGNIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMR 885
T + R++S +Y + + + ++ + AG A++G +G+GKST++ ++
Sbjct: 3 TSDTTAPPLLCARSISKQYS---GVEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAG 59
Query: 886 FYDPISGTVLIDGYDIRTLN-LRSLRRKIGLVQQEPALF-STTIYENIKYG--NEDASEI 941
P SGT+ I G L ++ + I LV QEP LF + ++ ENI +G AS
Sbjct: 60 IVPPDSGTLEIGGNPCARLTPAKAHQLGIYLVPQEPLLFPNLSVKENILFGLPKRQASMQ 119
Query: 942 ELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEAT 1001
++ + A G V DR Q V I R ++++ IL+LDE T
Sbjct: 120 KMKQLLAALGCQ-LDLDSSAG-SLEVADR---------QIVEILRGLMRDSRILILDEPT 168
Query: 1002 SALDTA-SENLIQEALDKLMEGRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGSHEQL 1058
++L A +E L + L +G + ++H+L IR AD+I+V++ G +A G L
Sbjct: 169 ASLTPAETERLFSRIRELLAQGVGIVFISHKLPEIRQLADRISVMRDGTIALSGKTADL 227
|
Length = 510 |
| >gnl|CDD|234200 TIGR03411, urea_trans_UrtD, urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Score = 68.4 bits (168), Expect = 1e-12
Identities = 62/220 (28%), Positives = 101/220 (45%), Gaps = 26/220 (11%)
Query: 855 NLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLN-LRSLRRKI 913
+L+L V G ++G +G+GK+T++ ++ P G+VL G D+ L + R I
Sbjct: 20 DLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIARAGI 79
Query: 914 GLVQQEPALF-STTIYENIKYGNEDASEIEL-MKATKAANAHGFISRMPE---------- 961
G Q+P +F + T++EN+ EL + K+ A F E
Sbjct: 80 GRKFQKPTVFENLTVFENL----------ELALPRDKSVFASLFFRLSAEEKDRIEEVLE 129
Query: 962 --GYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKL 1019
G LS GQKQ + I ++++P +LLLDE + + E L L
Sbjct: 130 TIGLADEADRLAGLLSHGQKQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSL 189
Query: 1020 MEGRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGSHEQL 1058
+ ++V H + +R+ ADK+ VL QG V GS +Q+
Sbjct: 190 AGKHSVVVVEHDMEFVRSIADKVTVLHQGSVLAEGSLDQV 229
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 242 |
| >gnl|CDD|183080 PRK11300, livG, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 68.9 bits (169), Expect = 1e-12
Identities = 60/222 (27%), Positives = 107/222 (48%), Gaps = 21/222 (9%)
Query: 855 NLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRKIG 914
N+NL+V ++++G +G+GK+TV + + FY P GT+L+ G I L + R G
Sbjct: 23 NVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIARM-G 81
Query: 915 LVQ--QEPALF-STTIYENIKYGNEDASEIELM----------KATKAA--NAHGFISRM 959
+V+ Q LF T+ EN+ + L +A A A ++ R+
Sbjct: 82 VVRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERV 141
Query: 960 PEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKL 1019
G H + L+ GQ++R+ IAR ++ P IL+LDE + L+ + E + +L
Sbjct: 142 --GLLEHANRQAGNLAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAEL 199
Query: 1020 ME--GRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGSHEQL 1058
T +++ H + + +D+I V+ QG G+ E++
Sbjct: 200 RNEHNVTVLLIEHDMKLVMGISDRIYVVNQGTPLANGTPEEI 241
|
Length = 255 |
| >gnl|CDD|213199 cd03232, ABCG_PDR_domain2, Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 67.3 bits (165), Expect = 1e-12
Identities = 54/217 (24%), Positives = 96/217 (44%), Gaps = 45/217 (20%)
Query: 838 RNVSFKYPV-RPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVIS-LVMRFYD-PISGTV 894
+N+++ PV + N++ V G A++G+SG+GK+T++ L R I+G +
Sbjct: 7 KNLNYTVPVKGGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEI 66
Query: 895 LIDGYDIRTLNLRSLRRKIGLVQQEPALFST-TIYENIKYGNEDASEIELMKATKAANAH 953
LI+G + ++ +R G V+Q+ T+ E +++ +A
Sbjct: 67 LINGRPLD----KNFQRSTGYVEQQDVHSPNLTVREALRF---------------SALLR 107
Query: 954 GFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQ 1013
G LS Q++R+ I + PSIL LDE TS LD+ + I
Sbjct: 108 G-------------------LSVEQRKRLTIGVELAAKPSILFLDEPTSGLDSQAAYNIV 148
Query: 1014 EALDKL-MEGRTTIMVAHRLS--TIRNADKIAVLQQG 1047
L KL G+ + H+ S D++ +L++G
Sbjct: 149 RFLKKLADSGQAILCTIHQPSASIFEKFDRLLLLKRG 185
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 192 |
| >gnl|CDD|213200 cd03233, ABCG_PDR_domain1, First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 67.3 bits (165), Expect = 1e-12
Identities = 41/176 (23%), Positives = 71/176 (40%), Gaps = 32/176 (18%)
Query: 837 LRNVSF-KYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKST---VISLVMRFYDPISG 892
RN+SF R I I ++ + V G + V+G+ GSG ST ++ + G
Sbjct: 6 WRNISFTTGKGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEG 65
Query: 893 TVLIDGYDIRTLNLRSLRRKIGLVQQEPALFSTTIYENIKYGNEDASEIELMKATKAANA 952
+ +G + +I V +E F T E +
Sbjct: 66 DIHYNGIPYKE-FAEKYPGEIIYVSEEDVHFPTLTVR------------ETLDFALRCKG 112
Query: 953 HGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTAS 1008
+ F+ RG+ SGG+++RV+IA A++ S+L D +T LD+++
Sbjct: 113 NEFV-------------RGI--SGGERKRVSIAEALVSRASVLCWDNSTRGLDSST 153
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 202 |
| >gnl|CDD|233665 TIGR01978, sufC, FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Score = 68.1 bits (167), Expect = 2e-12
Identities = 62/225 (27%), Positives = 101/225 (44%), Gaps = 23/225 (10%)
Query: 849 DITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVM--RFYDPISGTVLIDGYDIRTLNL 906
D I + +NL V G A++G +GSGKST+ + Y+ SGT+L G D+ L
Sbjct: 12 DKEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEP 71
Query: 907 --RSLRRKIGLVQQEP--------ALFSTTIYENIKYGNEDASEIELMKATKAANAHGFI 956
R+ R + L Q P F + N + ++L+ K A +
Sbjct: 72 DERA-RAGLFLAFQYPEEIPGVSNLEFLRSAL-NARRSARGEEPLDLLDFLKLLKAKLAL 129
Query: 957 SRMPEGYQSHVGDRGVQ--LSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQE 1014
M E + +R V SGG+K+R I + L P + +LDE S LD + ++ E
Sbjct: 130 LGMDEEFL----NRSVNEGFSGGEKKRNEILQMALLEPKLAILDEIDSGLDIDALKIVAE 185
Query: 1015 ALDKLM-EGRTTIMVAH--RLSTIRNADKIAVLQQGKVAEIGSHE 1056
+++L R+ +++ H RL D + VL G++ + G E
Sbjct: 186 GINRLREPDRSFLIITHYQRLLNYIKPDYVHVLLDGRIVKSGDVE 230
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PMID:12554644) or associated with the membrane (PMID:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 243 |
| >gnl|CDD|236992 PRK11819, PRK11819, putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 70.9 bits (175), Expect = 2e-12
Identities = 57/211 (27%), Positives = 85/211 (40%), Gaps = 60/211 (28%)
Query: 837 LRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYD-PISG-TV 894
+ VS P P I ++++L G + V+G +G+GKST++ +M D G
Sbjct: 9 MNRVSKVVP--PKKQILKDISLSFFPGAKIGVLGLNGAGKSTLLR-IMAGVDKEFEGEAR 65
Query: 895 LIDGYDIRTLNLRSLRRKIGLVQQEPALFST-TIYENI-------------------KYG 934
G K+G + QEP L T+ EN+ Y
Sbjct: 66 PAPGI------------KVGYLPQEPQLDPEKTVRENVEEGVAEVKAALDRFNEIYAAYA 113
Query: 935 NEDASEIELMK-------ATKAANAHGFISRM---------PEGYQSHVGDRGV-QLSGG 977
DA L AA+A S++ P D V +LSGG
Sbjct: 114 EPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDALRCPPW------DAKVTKLSGG 167
Query: 978 QKQRVAIARAILKNPSILLLDEATSALDTAS 1008
+++RVA+ R +L+ P +LLLDE T+ LD S
Sbjct: 168 ERRRVALCRLLLEKPDMLLLDEPTNHLDAES 198
|
Length = 556 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 69.8 bits (172), Expect = 3e-12
Identities = 56/242 (23%), Positives = 111/242 (45%), Gaps = 37/242 (15%)
Query: 836 ELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVL 895
E+RN+S +++ V AG L + G G+G++ + + SG +L
Sbjct: 265 EVRNLSGG-------GKVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPASSGEIL 317
Query: 896 IDGYDIRTLNLRS----LRRKIGLV---QQEPALFST-TIYENIKYGN--EDASEIELMK 945
+DG + + +RS ++ I V ++ L +I ENI + + + +
Sbjct: 318 LDG---KPVRIRSPRDAIKAGIAYVPEDRKSEGLVLDMSIAENITLASLRRFSRRGLIDR 374
Query: 946 ATKAANAHGFISRM---PEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATS 1002
+ A A +I R+ + +G LSGG +Q+V +AR + +P +L+LDE T
Sbjct: 375 RKERALAERYIRRLRIKTPSPEQPIG----TLSGGNQQKVVLARWLATDPKVLILDEPTR 430
Query: 1003 ALDTASENLIQEALDKLM-EGRTTIMVAHRLST-----IRNADKIAVLQQGKVAEIGSHE 1056
+D ++ I + +L EG+ +M+ S+ + +D+I V+++G++ E
Sbjct: 431 GIDVGAKAEIYRLIRELAAEGKAILMI----SSELPELLGLSDRILVMREGRIVGELDRE 486
Query: 1057 QL 1058
+
Sbjct: 487 EA 488
|
Length = 500 |
| >gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 69.9 bits (172), Expect = 3e-12
Identities = 55/231 (23%), Positives = 99/231 (42%), Gaps = 37/231 (16%)
Query: 214 AYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKS 273
R ++++F V AG+ G +G+G+S ++ + L +P SG+ILL+G D+
Sbjct: 265 VKDRRGVTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPASGRILLNGKDVLG 324
Query: 274 LQ--LKWL----------REQMGLVSQEPALFATSIANNILLG---KEDASMDRVIEAAK 318
+ R GLV S+A N++LG K+ S ++
Sbjct: 325 RLSPRERRRLGLAYVPEDRHGHGLVLDL------SLAENLVLGRHDKKPFSRGGFLDRRA 378
Query: 319 AANAHSFVEGL-------PDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEAT 371
F L LSGG +Q++ +AR + R P +L+ + T
Sbjct: 379 IR---KFARELIEEFDVRAPSPDAPAR----SLSGGNQQKLILARELARRPDLLIAAQPT 431
Query: 372 SALDAES-ELIVQRALEKIMSNRTTIVVAHRLSTVRDV-DTIMVLKNGQVV 420
LD + E I +R LE + + ++++ L + ++ D I V+ G++V
Sbjct: 432 RGLDVGAIEFIHERLLELRDAGKAVLLISEDLDEILELSDRIAVIYEGRIV 482
|
Length = 501 |
| >gnl|CDD|214372 CHL00131, ycf16, sulfate ABC transporter protein; Validated | Back alignment and domain information |
|---|
Score = 67.7 bits (166), Expect = 3e-12
Identities = 66/245 (26%), Positives = 102/245 (41%), Gaps = 63/245 (25%)
Query: 849 DITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRF--YDPISGTVLIDGYDIRTLN- 905
+ I + LNL ++ G A++G +GSGKST+ ++ Y + G +L G I L
Sbjct: 19 ENEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEP 78
Query: 906 --------------------------LR----SLRRKIGLVQQEPALFSTTIYENIKYGN 935
LR S R+ GL + +P F I E +K
Sbjct: 79 EERAHLGIFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVG 138
Query: 936 EDASEIELMKATKAANAHGFISR-MPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSI 994
D S F+SR + EG+ SGG+K+R I + L + +
Sbjct: 139 MDPS---------------FLSRNVNEGF-----------SGGEKKRNEILQMALLDSEL 172
Query: 995 LLLDEATSALDTASENLIQEALDKLM-EGRTTIMVAH--RLSTIRNADKIAVLQQGKVAE 1051
+LDE S LD + +I E ++KLM + I++ H RL D + V+Q GK+ +
Sbjct: 173 AILDETDSGLDIDALKIIAEGINKLMTSENSIILITHYQRLLDYIKPDYVHVMQNGKIIK 232
Query: 1052 IGSHE 1056
G E
Sbjct: 233 TGDAE 237
|
Length = 252 |
| >gnl|CDD|213188 cd03221, ABCF_EF-3, ATP-binding cassette domain of elongation factor 3, subfamily F | Back alignment and domain information |
|---|
Score = 64.8 bits (159), Expect = 3e-12
Identities = 35/96 (36%), Positives = 54/96 (56%), Gaps = 7/96 (7%)
Query: 954 GFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQ 1013
G ++ + QLSGG+K R+A+A+ +L+NP++LLLDE T+ LD S ++
Sbjct: 55 GIVTWGSTVKIGYF----EQLSGGEKMRLALAKLLLENPNLLLLDEPTNHLDLESIEALE 110
Query: 1014 EALDKLMEGRTTIMVAHRLSTIRN-ADKIAVLQQGK 1048
EAL + T I+V+H + A KI L+ GK
Sbjct: 111 EALKEY--PGTVILVSHDRYFLDQVATKIIELEDGK 144
|
Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. Length = 144 |
| >gnl|CDD|183231 PRK11614, livF, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 67.2 bits (164), Expect = 3e-12
Identities = 59/235 (25%), Positives = 109/235 (46%), Gaps = 19/235 (8%)
Query: 835 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTV 894
+ VS Y I ++L ++ G + ++G +G+GK+T++ + SG +
Sbjct: 6 LSFDKVSAHYG---KIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRI 62
Query: 895 LIDGYDIRTLNL-RSLRRKIGLVQQEPALFS-TTIYENIKYGNEDASEIELMKATKAANA 952
+ DG DI + +R + +V + +FS T+ EN+ G A + + +
Sbjct: 63 VFDGKDITDWQTAKIMREAVAIVPEGRRVFSRMTVEENLAMGGFFAERDQFQE--RIKWV 120
Query: 953 HGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLI 1012
+ R+ E G +SGG++Q +AI RA++ P +LLLDE + L + +I
Sbjct: 121 YELFPRLHERRIQRAG----TMSGGEQQMLAIGRALMSQPRLLLLDEPSLGL---APIII 173
Query: 1013 QEALDKLM----EGRTTIMVAHRLS-TIRNADKIAVLQQGKVAEIGSHEQLLRKE 1062
Q+ D + +G T +V + ++ AD+ VL+ G V + + LL E
Sbjct: 174 QQIFDTIEQLREQGMTIFLVEQNANQALKLADRGYVLENGHVVLEDTGDALLANE 228
|
Length = 237 |
| >gnl|CDD|236707 PRK10522, PRK10522, multidrug transporter membrane component/ATP-binding component; Provisional | Back alignment and domain information |
|---|
Score = 70.4 bits (173), Expect = 3e-12
Identities = 65/235 (27%), Positives = 107/235 (45%), Gaps = 30/235 (12%)
Query: 835 IELRNVSFKYP-----VRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDP 889
+ELRNV+F Y V P +NL + G L ++G +GSGKST+ L+ Y P
Sbjct: 323 LELRNVTFAYQDNGFSVGP-------INLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQP 375
Query: 890 ISGTVLIDGYDIRTLNLRSLRRKIGLVQQEPALFSTTIYENIKYGNEDASEIELMKATKA 949
SG +L+DG + R+ V + LF + G E K
Sbjct: 376 QSGEILLDGKPVTAEQPEDYRKLFSAVFTDFHLFDQLL------GPEG-------KPANP 422
Query: 950 ANAHGFISRMPEGYQSHVGD---RGVQLSGGQKQRVAIARAILKNPSILLLDEATSALD- 1005
A ++ R+ ++ + D ++LS GQK+R+A+ A+ + ILLLDE + D
Sbjct: 423 ALVEKWLERLKMAHKLELEDGRISNLKLSKGQKKRLALLLALAEERDILLLDEWAADQDP 482
Query: 1006 TASENLIQEALDKLME-GRTTIMVAHRLSTIRNADKIAVLQQGKVAEIGSHEQLL 1059
Q L L E G+T ++H +AD++ ++ G+++E+ E+
Sbjct: 483 HFRREFYQVLLPLLQEMGKTIFAISHDDHYFIHADRLLEMRNGQLSELTGEERDA 537
|
Length = 547 |
| >gnl|CDD|236997 PRK11831, PRK11831, putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Score = 67.5 bits (165), Expect = 4e-12
Identities = 65/240 (27%), Positives = 113/240 (47%), Gaps = 33/240 (13%)
Query: 206 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKIL 265
++ V F +R +F+N++ +V GK A +GPSG GK+T++ ++ P G+IL
Sbjct: 8 VDMRGVSFTRGNRC--IFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEIL 65
Query: 266 LDGHDLKSL---QLKWLREQMGLVSQEPALFA-TSIANNILLGKEDASMDRVIEAAKAAN 321
DG ++ ++ +L +R++M ++ Q ALF ++ +N+ A R A
Sbjct: 66 FDGENIPAMSRSRLYTVRKRMSMLFQSGALFTDMNVFDNV------AYPLREHTQLPAPL 119
Query: 322 AHSFVE------GLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALD 375
HS V GL + E LSGG +R A+ARA+ P +++ DE D
Sbjct: 120 LHSTVMMKLEAVGLRGAAKLMPSE----LSGGMARRAALARAIALEPDLIMFDEPFVGQD 175
Query: 376 AESELIVQRALEKIMSNR------TTIVVAHRLSTVRDV-DTIMVLKNGQVVESGTHVDL 428
I L K++S T +VV+H + V + D ++ + ++V G+ L
Sbjct: 176 P----ITMGVLVKLISELNSALGVTCVVVSHDVPEVLSIADHAYIVADKKIVAHGSAQAL 231
|
Length = 269 |
| >gnl|CDD|184198 PRK13638, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 67.7 bits (165), Expect = 4e-12
Identities = 64/220 (29%), Positives = 103/220 (46%), Gaps = 16/220 (7%)
Query: 842 FKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDG--Y 899
F+Y D + + LNL S +VG +G GKST+ + P G VL G
Sbjct: 9 FRYQ---DEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPL 65
Query: 900 DIRTLNLRSLRRKIGLVQQEP--ALFSTTIYENIKYGNEDASEIELMKATKAANAHGFIS 957
D L +LR+++ V Q+P +F T I +I + + E + A +
Sbjct: 66 DYSKRGLLALRQQVATVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITRRVDEALTLVD 125
Query: 958 RMPEGYQSHVGDRGVQ-LSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEAL 1016
H + +Q LS GQK+RVAIA A++ LLLDE T+ LD A + +
Sbjct: 126 ------AQHFRHQPIQCLSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAII 179
Query: 1017 DKLM-EGRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGS 1054
+++ +G I+ +H + I +D + VL+QG++ G+
Sbjct: 180 RRIVAQGNHVIISSHDIDLIYEISDAVYVLRQGQILTHGA 219
|
Length = 271 |
| >gnl|CDD|132561 TIGR03522, GldA_ABC_ATP, gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Score = 68.3 bits (167), Expect = 4e-12
Identities = 52/183 (28%), Positives = 85/183 (46%), Gaps = 36/183 (19%)
Query: 863 GRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRKIG-------- 914
GR + +G +G+GKST + ++ + P SG+V + G D+ N + ++R IG
Sbjct: 28 GRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQ-NPKEVQRNIGYLPEHNPL 86
Query: 915 ---LVQQEPALFSTTIY--ENIKYGNEDASEIELMKATKAANAHGFISRMPEGYQSHVGD 969
+ +E F IY + IEL+ PE ++ +G
Sbjct: 87 YLDMYVREYLQFIAGIYGMKGQLLKQRVEEMIELVGLR------------PEQHKK-IG- 132
Query: 970 RGVQLSGGQKQRVAIARAILKNPSILLLDEATSALD----TASENLIQE-ALDKLMEGRT 1024
QLS G +QRV +A+A++ +P +L+LDE T+ LD N+I+ DK + T
Sbjct: 133 ---QLSKGYRQRVGLAQALIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIGKDKTIILST 189
Query: 1025 TIM 1027
IM
Sbjct: 190 HIM 192
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. Length = 301 |
| >gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 69.5 bits (170), Expect = 4e-12
Identities = 54/209 (25%), Positives = 103/209 (49%), Gaps = 18/209 (8%)
Query: 224 ENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYE--PTSGKILLDGHDLKSLQLKWLRE 281
+ ++ V G+ G +G+GKST++ ++ +Y G+I G LK+ ++
Sbjct: 18 DGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTER 77
Query: 282 Q-MGLVSQEPALFAT-SIANNILLGKE------DASMDRVIEAAKAANAHSFVEGLPDGY 333
+ ++ QE L S+A NI LG E + + + AK ++
Sbjct: 78 AGIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNV-- 135
Query: 334 QTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSAL-DAESELIVQRALEKIMSN 392
VG GGQ+Q + IA+A+ + ++L+LDE +S+L + E+E+++ +
Sbjct: 136 TRPVG----DYGGGQQQLVEIAKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKAHG 191
Query: 393 RTTIVVAHRLSTVRDV-DTIMVLKNGQVV 420
+ ++H+L+ V+ V DTI V+++GQ V
Sbjct: 192 VACVYISHKLNEVKAVCDTICVIRDGQHV 220
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500 |
| >gnl|CDD|214372 CHL00131, ycf16, sulfate ABC transporter protein; Validated | Back alignment and domain information |
|---|
Score = 67.4 bits (165), Expect = 4e-12
Identities = 57/221 (25%), Positives = 105/221 (47%), Gaps = 25/221 (11%)
Query: 222 VFENLNFSVDAGKTFAFVGPSGSGKSTIISMV--QRLYEPTSGKILLDGHDLKSLQLKWL 279
+ + LN S++ G+ A +GP+GSGKST+ ++ Y+ G IL G + L+ +
Sbjct: 22 ILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEPE-E 80
Query: 280 REQMGL------------VSQEPALFATSIANNILLGKEDASMDRVIEAAKAANAHSFVE 327
R +G+ VS L + G + +E + N +
Sbjct: 81 RAHLGIFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELD---PLEFLEIINEKLKLV 137
Query: 328 GLPDGYQTQ-VGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRAL 386
G+ + ++ V EG SGG+K+R I + L + ++ +LDE S LD ++ I+ +
Sbjct: 138 GMDPSFLSRNVNEG---FSGGEKKRNEILQMALLDSELAILDETDSGLDIDALKIIAEGI 194
Query: 387 EKIM-SNRTTIVVAH--RLSTVRDVDTIMVLKNGQVVESGT 424
K+M S + I++ H RL D + V++NG+++++G
Sbjct: 195 NKLMTSENSIILITHYQRLLDYIKPDYVHVMQNGKIIKTGD 235
|
Length = 252 |
| >gnl|CDD|185016 PRK15056, PRK15056, manganese/iron transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 67.6 bits (165), Expect = 4e-12
Identities = 70/247 (28%), Positives = 106/247 (42%), Gaps = 38/247 (15%)
Query: 828 VTEIKGNIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFY 887
VT G+ LR+ SF P G A+VG +GSGKST+ +M F
Sbjct: 14 VTWRNGHTALRDASFTVP----------------GGSIAALVGVNGSGKSTLFKALMGFV 57
Query: 888 DPISGTVLIDGYDIRTLNLRSLRRK-IGLVQQE-------PALFSTTIYENIKYGNEDAS 939
SG + I G R ++L++ + V Q P L + +YG+
Sbjct: 58 RLASGKISILGQPTR----QALQKNLVAYVPQSEEVDWSFPVLVEDVVMMG-RYGH--MG 110
Query: 940 EIELMKATKAANAHGFISR--MPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLL 997
+ K ++R M E +G +LSGGQK+RV +ARAI + ++LL
Sbjct: 111 WLRRAKKRDRQIVTAALARVDMVEFRHRQIG----ELSGGQKKRVFLARAIAQQGQVILL 166
Query: 998 DEATSALDTASENLIQEALDKLM-EGRTTIMVAHRLSTIRNADKIAVLQQGKVAEIGSHE 1056
DE + +D +E I L +L EG+T ++ H L ++ V+ +G V G E
Sbjct: 167 DEPFTGVDVKTEARIISLLRELRDEGKTMLVSTHNLGSVTEFCDYTVMVKGTVLASGPTE 226
Query: 1057 QLLRKEN 1063
EN
Sbjct: 227 TTFTAEN 233
|
Length = 272 |
| >gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 69.6 bits (171), Expect = 5e-12
Identities = 63/255 (24%), Positives = 118/255 (46%), Gaps = 55/255 (21%)
Query: 836 ELRNVSFKYP-VRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTV 894
+ +P V+ ++++ AG+ A++G++G+GKST++ ++ Y P +G++
Sbjct: 6 SFDGIGKTFPGVKA----LDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSI 61
Query: 895 LIDGYDIRTLNLR-SLRRKIGLVQQE----PALFSTTIYENIKYGNEDASEIELMKATKA 949
LIDG ++R + +L + ++ QE P + T+ EN+ G +
Sbjct: 62 LIDGQEMRFASTTAALAAGVAIIYQELHLVPEM---TVAENLYLG-------------QL 105
Query: 950 ANAHGFISRMPEGYQSHVGDR----GVQ---------LSGGQKQRVAIARAILKNPSILL 996
+ G ++R ++ GV LS GQ+Q V IA+A+ +N ++
Sbjct: 106 PHKGGIVNR--RLLNYEAREQLEHLGVDIDPDTPLKYLSIGQRQMVEIAKALARNARVIA 163
Query: 997 LDEATSALDT-ASENL--IQEALDKLMEGRTTIMVAHRLSTI-RNADKIAVLQQGK---- 1048
DE TS+L E L + L EGR + V+HR+ I D I V + G+
Sbjct: 164 FDEPTSSLSAREIEQLFRVIRELRA--EGRVILYVSHRMEEIFALCDAITVFKDGRYVAT 221
Query: 1049 ---VAEIGSHEQLLR 1060
+A++ +QL++
Sbjct: 222 FDDMAQV-DRDQLVQ 235
|
Length = 501 |
| >gnl|CDD|236707 PRK10522, PRK10522, multidrug transporter membrane component/ATP-binding component; Provisional | Back alignment and domain information |
|---|
Score = 69.2 bits (170), Expect = 6e-12
Identities = 53/168 (31%), Positives = 83/168 (49%), Gaps = 17/168 (10%)
Query: 205 QIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKI 264
+E V FAY V +N ++ G+ +G +GSGKST+ ++ LY+P SG+I
Sbjct: 322 TLELRNVTFAYQDNGFSV-GPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEI 380
Query: 265 LLDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNILLGKEDASMDRVIEAAKAANAHS 324
LLDG + + Q + R+ V + LF LLG E + A A
Sbjct: 381 LLDGKPVTAEQPEDYRKLFSAVFTDFHLFDQ------LLGPEG-------KPANPALVEK 427
Query: 325 FVEGLPDGYQTQVGEG---GTQLSGGQKQRIAIARAVLRNPKILLLDE 369
++E L ++ ++ +G +LS GQK+R+A+ A+ ILLLDE
Sbjct: 428 WLERLKMAHKLELEDGRISNLKLSKGQKKRLALLLALAEERDILLLDE 475
|
Length = 547 |
| >gnl|CDD|227118 COG4778, PhnL, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 66.3 bits (162), Expect = 7e-12
Identities = 55/183 (30%), Positives = 86/183 (46%), Gaps = 29/183 (15%)
Query: 852 IFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLI----DGYDIRTLNLR 907
+ N++L V+AG + + G SGSGKST++ + Y P G +L+ + D+ T R
Sbjct: 26 VLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHEGEWVDLVTAEPR 85
Query: 908 SL----RRKIGLVQQEPALFSTTI--YENIKYGNEDASEIELMKATKAANAHGFISRMPE 961
+ R IG V Q F I + E + + A A ++R+
Sbjct: 86 EVLEVRRTTIGYVSQ----FLRVIPRVSALDVVAEPLLARGVPREVARAKAADLLTRL-- 139
Query: 962 GYQSHVGDRGVQL-----SGGQKQRVAIARAILKNPSILLLDEATSALDTASE----NLI 1012
++ +R L SGG++QRV IAR + + ILLLDE T++LD + LI
Sbjct: 140 ----NLPERLWSLAPATFSGGEQQRVNIARGFIVDYPILLLDEPTASLDATNRAVVVELI 195
Query: 1013 QEA 1015
+EA
Sbjct: 196 REA 198
|
Length = 235 |
| >gnl|CDD|185016 PRK15056, PRK15056, manganese/iron transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 66.8 bits (163), Expect = 7e-12
Identities = 58/217 (26%), Positives = 101/217 (46%), Gaps = 26/217 (11%)
Query: 220 HMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWL 279
H + +F+V G A VG +GSGKST+ + SGKI + G + + L
Sbjct: 20 HTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTR----QAL 75
Query: 280 REQM-GLVSQEPAL---FATSIANNILLGK--------EDASMDRVIEAAKAANAHSFVE 327
++ + V Q + F + + +++G+ DR I A A
Sbjct: 76 QKNLVAYVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARV----- 130
Query: 328 GLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALE 387
+ + Q+GE LSGGQK+R+ +ARA+ + +++LLDE + +D ++E + L
Sbjct: 131 DMVEFRHRQIGE----LSGGQKKRVFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLR 186
Query: 388 KIMSN-RTTIVVAHRLSTVRDVDTIMVLKNGQVVESG 423
++ +T +V H L +V + V+ G V+ SG
Sbjct: 187 ELRDEGKTMLVSTHNLGSVTEFCDYTVMVKGTVLASG 223
|
Length = 272 |
| >gnl|CDD|182569 PRK10584, PRK10584, putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Score = 66.0 bits (161), Expect = 8e-12
Identities = 64/208 (30%), Positives = 97/208 (46%), Gaps = 30/208 (14%)
Query: 230 VDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSL---QLKWLR-EQMGL 285
V G+T A +G SGSGKST+++++ L + +SG++ L G L + LR + +G
Sbjct: 33 VKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAKLRAKHVGF 92
Query: 286 VSQEPALFATSIA-NNI-----LLGKEDA-SMDRVIEAAKAANAHSFVEGLPDGYQTQVG 338
V Q L T A N+ L G+ S + + ++ LP
Sbjct: 93 VFQSFMLIPTLNALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLDHLP-------- 144
Query: 339 EGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMS-NR---- 393
QLSGG++QR+A+ARA P +L DE T LD ++ + + + S NR
Sbjct: 145 ---AQLSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTG---DKIADLLFSLNREHGT 198
Query: 394 TTIVVAHRLSTVRDVDTIMVLKNGQVVE 421
T I+V H L D + L NGQ+ E
Sbjct: 199 TLILVTHDLQLAARCDRRLRLVNGQLQE 226
|
Length = 228 |
| >gnl|CDD|213188 cd03221, ABCF_EF-3, ATP-binding cassette domain of elongation factor 3, subfamily F | Back alignment and domain information |
|---|
Score = 63.6 bits (156), Expect = 8e-12
Identities = 34/79 (43%), Positives = 51/79 (64%), Gaps = 7/79 (8%)
Query: 343 QLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAH-R 401
QLSGG+K R+A+A+ +L NP +LLLDE T+ LD ES ++ AL++ T I+V+H R
Sbjct: 70 QLSGGEKMRLALAKLLLENPNLLLLDEPTNHLDLESIEALEEALKE--YPGTVILVSHDR 127
Query: 402 --LSTVRDVDTIMVLKNGQ 418
L V I+ L++G+
Sbjct: 128 YFLDQV--ATKIIELEDGK 144
|
Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. Length = 144 |
| >gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Score = 68.9 bits (169), Expect = 8e-12
Identities = 50/187 (26%), Positives = 84/187 (44%), Gaps = 41/187 (21%)
Query: 238 FVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGLVSQEPALFATSI 297
+GP+G GK+T + ++ + +P G DLK VS +P +
Sbjct: 372 ILGPNGIGKTTFVKLLAGVIKPDEGSEE----DLK-------------VSYKPQYISP-- 412
Query: 298 ANNILLGKEDASMDRVIEAAKAANAHS---FVE-----GLPDGYQTQVGEGGTQLSGGQK 349
D +++ ++ +A + S E L D + V E LSGG+
Sbjct: 413 -------DYDGTVEDLLRSAIRSAFGSSYFKTEIVKPLNLEDLLERPVDE----LSGGEL 461
Query: 350 QRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNR--TTIVVAHRLSTVRD 407
QR+AIA A+ R + LLDE ++ LD E +IV + + + + N T +VV H + +
Sbjct: 462 QRVAIAAALSREADLYLLDEPSAYLDVEQRIIVAKVIRRFIENNEKTALVVDHDIYMIDY 521
Query: 408 V-DTIMV 413
V D ++V
Sbjct: 522 VSDRLIV 528
|
Length = 591 |
| >gnl|CDD|236755 PRK10762, PRK10762, D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Score = 68.5 bits (168), Expect = 9e-12
Identities = 64/211 (30%), Positives = 107/211 (50%), Gaps = 17/211 (8%)
Query: 848 PDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLR 907
P + L V GR +A+VG++G+GKST++ ++ Y +G++L G ++ +
Sbjct: 15 PGVKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPK 74
Query: 908 -SLRRKIGLVQQEPALFST-TIYENIKYGNEDASEIELMKATKA-ANAHGFISRMPEGYQ 964
S IG++ QE L TI ENI G E + + K A A ++R+ +
Sbjct: 75 SSQEAGIGIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFS 134
Query: 965 SH--VGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSAL-DTASENL---IQEALDK 1018
S VG+ LS G++Q V IA+ + ++++DE T AL DT +E+L I+E
Sbjct: 135 SDKLVGE----LSIGEQQMVEIAKVLSFESKVIIMDEPTDALTDTETESLFRVIRELKS- 189
Query: 1019 LMEGRTTIMVAHRLSTIRN-ADKIAVLQQGK 1048
+GR + ++HRL I D + V + G+
Sbjct: 190 --QGRGIVYISHRLKEIFEICDDVTVFRDGQ 218
|
Length = 501 |
| >gnl|CDD|183231 PRK11614, livF, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 65.7 bits (160), Expect = 1e-11
Identities = 59/216 (27%), Positives = 111/216 (51%), Gaps = 16/216 (7%)
Query: 222 VFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQL-KWLR 280
++ ++ G+ +G +G+GK+T++ + TSG+I+ DG D+ Q K +R
Sbjct: 20 ALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMR 79
Query: 281 EQMGLVSQEPALFA-TSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGE 339
E + +V + +F+ ++ N+ +G A D+ E K E P ++ ++
Sbjct: 80 EAVAIVPEGRRVFSRMTVEENLAMGGFFAERDQFQERIKWV-----YELFPRLHERRIQR 134
Query: 340 GGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNRT---TI 396
GT +SGG++Q +AI RA++ P++LLLDE + L + +I+Q+ + I R TI
Sbjct: 135 AGT-MSGGEQQMLAIGRALMSQPRLLLLDEPSLGL---APIIIQQIFDTIEQLREQGMTI 190
Query: 397 VVAHRLS--TVRDVDTIMVLKNGQVVESGTHVDLIS 430
+ + + ++ D VL+NG VV T L++
Sbjct: 191 FLVEQNANQALKLADRGYVLENGHVVLEDTGDALLA 226
|
Length = 237 |
| >gnl|CDD|181965 PRK09580, sufC, cysteine desulfurase ATPase component; Reviewed | Back alignment and domain information |
|---|
Score = 64.8 bits (158), Expect = 2e-11
Identities = 58/221 (26%), Positives = 97/221 (43%), Gaps = 23/221 (10%)
Query: 222 VFENLNFSVDAGKTFAFVGPSGSGKSTIISMV--QRLYEPTSGKILLDGHDLKSLQLKWL 279
+ LN V G+ A +GP+GSGKST+ + + + YE T G + G DL L +
Sbjct: 16 ILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSPE-- 73
Query: 280 REQMG----LVSQEPA--------LFATSIANNILLGKEDASMDRVIEAAKAANAHSFVE 327
++ G + Q P F + N + + +DR + ++
Sbjct: 74 -DRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLK 132
Query: 328 GLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALE 387
D V G SGG+K+R I + + P++ +LDE+ S LD ++ IV +
Sbjct: 133 MPEDLLTRSVNVG---FSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKIVADGVN 189
Query: 388 KIMS-NRTTIVVAH--RLSTVRDVDTIMVLKNGQVVESGTH 425
+ R+ I+V H R+ D + VL G++V+SG
Sbjct: 190 SLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSGDF 230
|
Length = 248 |
| >gnl|CDD|215634 PLN03211, PLN03211, ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Score = 67.2 bits (164), Expect = 3e-11
Identities = 57/198 (28%), Positives = 100/198 (50%), Gaps = 19/198 (9%)
Query: 233 GKTFAFVGPSGSGKSTIISMVQ-RLYEPT-SGKILLDGHDLKSLQLKWLREQMGLVSQEP 290
G+ A +GPSGSGKST+++ + R+ +G IL + LK + G V+Q+
Sbjct: 94 GEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTKQILK----RTGFVTQDD 149
Query: 291 ALFA------TSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQ- 343
L+ T + ++L + + I A++ + GL T +G +
Sbjct: 150 ILYPHLTVRETLVFCSLLRLPKSLTKQEKILVAESVISEL---GLTKCENTIIGNSFIRG 206
Query: 344 LSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVA-HRL 402
+SGG+++R++IA +L NP +L+LDE TS LDA + + L + TIV + H+
Sbjct: 207 ISGGERKRVSIAHEMLINPSLLILDEPTSGLDATAAYRLVLTLGSLAQKGKTIVTSMHQP 266
Query: 403 ST--VRDVDTIMVLKNGQ 418
S+ + D+++VL G+
Sbjct: 267 SSRVYQMFDSVLVLSEGR 284
|
Length = 659 |
| >gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 66.7 bits (163), Expect = 3e-11
Identities = 49/223 (21%), Positives = 108/223 (48%), Gaps = 17/223 (7%)
Query: 835 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTV 894
I + + + + +++NL V G A++G++G+GKST++ ++ ++P GT+
Sbjct: 6 ISMAGIGKSFGP---VHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTI 62
Query: 895 LIDGYDIRTLNLR-SLRRKIGLVQQEPALFST-TIYENIKYGNEDASE------IELMKA 946
I+ + L+ + + + IG++ QE ++ T+ EN+ G + I+ +
Sbjct: 63 TINNINYNKLDHKLAAQLGIGIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREM 122
Query: 947 TKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDT 1006
A + V + LS KQ + IA+ ++ + ++++DE TS+L
Sbjct: 123 RVRAAMMLLRVGLKVDLDEKVAN----LSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTN 178
Query: 1007 ASENLIQEALDKLM-EGRTTIMVAHRLSTIRN-ADKIAVLQQG 1047
+ + +++L EG + ++H+L+ IR D+ V++ G
Sbjct: 179 KEVDYLFLIMNQLRKEGTAIVYISHKLAEIRRICDRYTVMKDG 221
|
Length = 510 |
| >gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Score = 67.3 bits (165), Expect = 3e-11
Identities = 56/204 (27%), Positives = 99/204 (48%), Gaps = 32/204 (15%)
Query: 222 VFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLD-----GHDLKSLQL 276
+ ++++ S G +G +G+GKST++ ++ + + +G+ G+ + QL
Sbjct: 20 ILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAPGIKVGYLPQEPQL 79
Query: 277 ---KWLRE--QMGLVSQEPAL---------FATSIANNILLGKEDASMDRVIEAAKAANA 322
K +RE + G+ + AL FA A+ L E A + +I+AA A +
Sbjct: 80 DPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDL 139
Query: 323 HSFVE------GLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDA 376
+E P V T+LSGG+++R+A+ R +L P +LLLDE T+ LDA
Sbjct: 140 DRKLEIAMDALRCPPW-DADV----TKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDA 194
Query: 377 ESELIVQRALEKIMSNRTTIVVAH 400
ES +++ L++ T + V H
Sbjct: 195 ESVAWLEQHLQEYPG--TVVAVTH 216
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. Length = 552 |
| >gnl|CDD|213234 cd03267, ABC_NatA_like, ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA | Back alignment and domain information |
|---|
Score = 63.9 bits (156), Expect = 4e-11
Identities = 58/251 (23%), Positives = 101/251 (40%), Gaps = 55/251 (21%)
Query: 835 IELRNVSFKYPVRP------------------DITIFENLNLKVSAGRSLAVVGQSGSGK 876
IE+ N+S Y V ++ + ++ + G + +G +G+GK
Sbjct: 1 IEVSNLSKSYRVYSKEPGLIGSLKSLFKRKYREVEALKGISFTIEKGEIVGFIGPNGAGK 60
Query: 877 STVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRKIGLV--QQE------PAL----FS 924
+T + ++ P SG V + G + R+IG+V Q+ P +
Sbjct: 61 TTTLKILSGLLQPTSGEVRVAGLVPWK-RRKKFLRRIGVVFGQKTQLWWDLPVIDSFYLL 119
Query: 925 TTIY--ENIKYGNEDASEIELMKATKAANAHGFISRMPEGYQSHVGDRGV-QLSGGQKQR 981
IY ++ EL+ + D V QLS GQ+ R
Sbjct: 120 AAIYDLPPARFKKRLDELSELLDLE------------------ELLDTPVRQLSLGQRMR 161
Query: 982 VAIARAILKNPSILLLDEATSALDTASENLIQEALDKLMEGR-TTIMV-AHRLSTI-RNA 1038
IA A+L P IL LDE T LD ++ I+ L + R TT+++ +H + I A
Sbjct: 162 AEIAAALLHEPEILFLDEPTIGLDVVAQENIRNFLKEYNRERGTTVLLTSHYMKDIEALA 221
Query: 1039 DKIAVLQQGKV 1049
++ V+ +G++
Sbjct: 222 RRVLVIDKGRL 232
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein. Length = 236 |
| >gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 66.0 bits (161), Expect = 5e-11
Identities = 96/419 (22%), Positives = 163/419 (38%), Gaps = 78/419 (18%)
Query: 672 FVAEQLFLKGFGGDYNRAYSRATSVARE----AIANIRTVAAYGIEKRISIQFASELSQP 727
F+ ++ L G YN Y RA ++ RE A R V YG ++ ++ A L
Sbjct: 100 FLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVTRPVGDYGGGQQQLVEIAKAL--- 156
Query: 728 NKQA-----------LLRGHISGFGYGVSQLLSLCSYALGLWYASVLIKQKGSNFGDIMK 776
NKQA L LL + A V I K + +
Sbjct: 157 NKQARLLILDEPSSSLTEKETEI-------LLDIIRDLKAHGVACVYISHKLNEVKAVCD 209
Query: 777 SFMVLIITALAVAETLALA---PDIVKGSQALGPVFGILYRKTAIQPDDPASKEVTEIKG 833
+ V I VA DI+ + +G LY P +P EI
Sbjct: 210 TICV-IRDGQHVATKDMSTMSEDDII--TMMVGREITSLY------PHEPH-----EIGD 255
Query: 834 NI-ELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYD-PIS 891
I E RN++ + P ++++ + G L V G G+G++ ++ + Y
Sbjct: 256 VILEARNLTCWDVINPHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFE 315
Query: 892 GTVLIDGYDIRTLN-LRSLRRKIGLVQQE------------------PALFSTTIYENIK 932
G V I+G + N +++R I +V ++ L S I
Sbjct: 316 GNVFINGKPVDIRNPAQAIRAGIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRID 375
Query: 933 YGNEDASEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNP 992
E ++ K A F +P G +LSGG +Q+ +A+ +L NP
Sbjct: 376 AAAELQIIGSAIQRLKVKTASPF---LPIG----------RLSGGNQQKAVLAKMLLTNP 422
Query: 993 SILLLDEATSALDTASENLIQEALDKLM-EGRTTIMVAHRLSTIRN-ADKIAVLQQGKV 1049
+L+LDE T +D ++ I + +++L EG I+V+ L+ + +D++ V+ +GK+
Sbjct: 423 RVLILDEPTRGVDVGAKYEIYKLINQLAQEGVAIIVVSSELAEVLGLSDRVLVIGEGKL 481
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500 |
| >gnl|CDD|213204 cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-binding cassette domain 2 of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 64.0 bits (156), Expect = 5e-11
Identities = 45/182 (24%), Positives = 75/182 (41%), Gaps = 46/182 (25%)
Query: 233 GKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDL--KSLQLKWLREQMGLVSQ-- 288
+ +GP+G GK+T I M+ + +P G I ++ + K +K + G V
Sbjct: 25 SEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTVSYKPQYIK--ADYEGTVRDLL 82
Query: 289 --------EPALFATSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEG 340
F T IA + + + +DR +V
Sbjct: 83 SSITKDFYTHPYFKTEIAKPLQI---EQILDR-----------------------EV--- 113
Query: 341 GTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSN--RTTIVV 398
+LSGG+ QR+AIA + ++ I LLDE ++ LD E L+ + + + N +T VV
Sbjct: 114 -PELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASKVIRRFAENNEKTAFVV 172
Query: 399 AH 400
H
Sbjct: 173 EH 174
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 246 |
| >gnl|CDD|184129 PRK13543, PRK13543, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 62.9 bits (153), Expect = 6e-11
Identities = 53/171 (30%), Positives = 78/171 (45%), Gaps = 22/171 (12%)
Query: 222 VFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLRE 281
VF L+F VDAG+ G +G+GK+T++ ++ L SG+I +DG
Sbjct: 26 VFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRGDRS---R 82
Query: 282 QMGLVSQEPALFA--TSIAN----NILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQT 335
M + P L A +++ N L G+ M +A + V GL T
Sbjct: 83 FMAYLGHLPGLKADLSTLENLHFLCGLHGRRAKQM--------PGSALAIV-GLAGYEDT 133
Query: 336 QVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRAL 386
V QLS GQK+R+A+AR L + LLDE + LD E +V R +
Sbjct: 134 LV----RQLSAGQKKRLALARLWLSPAPLWLLDEPYANLDLEGITLVNRMI 180
|
Length = 214 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 64.8 bits (159), Expect = 1e-10
Identities = 58/220 (26%), Positives = 106/220 (48%), Gaps = 34/220 (15%)
Query: 222 VFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQ-LKWLR 280
+++F+V AG+ G G+G++ + + +SG+ILLDG ++ ++
Sbjct: 274 KVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPASSGEILLDGKPVRIRSPRDAIK 333
Query: 281 EQMGLVS---QEPALFAT-SIANNILLGKEDASMDR------VIEAAKAANAHSFVEGL- 329
+ V + L SIA NI L AS+ R + + A A ++ L
Sbjct: 334 AGIAYVPEDRKSEGLVLDMSIAENITL----ASLRRFSRRGLIDRRKERALAERYIRRLR 389
Query: 330 ---PDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALD--AESE---LI 381
P Q +G LSGG +Q++ +AR + +PK+L+LDE T +D A++E LI
Sbjct: 390 IKTPSPEQ-PIGT----LSGGNQQKVVLARWLATDPKVLILDEPTRGIDVGAKAEIYRLI 444
Query: 382 VQRALEKIMSNRTTIVVAHRLSTVRDV-DTIMVLKNGQVV 420
+ A E + ++++ L + + D I+V++ G++V
Sbjct: 445 RELAAE----GKAILMISSELPELLGLSDRILVMREGRIV 480
|
Length = 500 |
| >gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Score = 65.6 bits (161), Expect = 1e-10
Identities = 47/186 (25%), Positives = 82/186 (44%), Gaps = 41/186 (22%)
Query: 239 VGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGLVSQEPALFATSIA 298
VGP+G GK+T ++ + +P G++ + LK +S +P
Sbjct: 371 VGPNGIGKTTFAKLLAGVLKPDEGEVDPE--------LK--------ISYKP-------- 406
Query: 299 NNILLGKEDASMDRVIEAAKAANAHSFVE-------GLPDGYQTQVGEGGTQLSGGQKQR 351
+ D +++ ++ + S+ + L V + LSGG+ QR
Sbjct: 407 -QYIKPDYDGTVEDLLRSITDDLGSSYYKSEIIKPLQLERLLDKNVKD----LSGGELQR 461
Query: 352 IAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNR--TTIVVAHRLSTVRD-- 407
+AIA + R+ + LLDE ++ LD E L V +A+ +I R T +VV H + + D
Sbjct: 462 VAIAACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATALVVDHDIYMI-DYI 520
Query: 408 VDTIMV 413
D +MV
Sbjct: 521 SDRLMV 526
|
Length = 590 |
| >gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
Score = 59.7 bits (144), Expect = 2e-10
Identities = 46/199 (23%), Positives = 63/199 (31%), Gaps = 67/199 (33%)
Query: 233 GKTFAFVGPSGSGKSTIISMVQRLYEPTSGK-ILLDGHDLKSLQLKWLREQMGLVSQEPA 291
G+ VGP GSGK+T+ + R P G I +DG D+ L L
Sbjct: 2 GEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLL----------- 50
Query: 292 LFATSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQR 351
VG SG + R
Sbjct: 51 ------------------------------------------LIIVGGKKASGSGELRLR 68
Query: 352 IAIARAVLRNPKILLLDEATSALDAESELIVQRALE-------KIMSNRTTIVVAHRLST 404
+A+A A P +L+LDE TS LDAE E ++ E K N T I+ +
Sbjct: 69 LALALARKLKPDVLILDEITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVILTTNDEKD 128
Query: 405 VRD------VDTIMVLKNG 417
+ D +VL
Sbjct: 129 LGPALLRRRFDRRIVLLLI 147
|
AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. Length = 148 |
| >gnl|CDD|213200 cd03233, ABCG_PDR_domain1, First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 60.4 bits (147), Expect = 3e-10
Identities = 50/210 (23%), Positives = 87/210 (41%), Gaps = 43/210 (20%)
Query: 225 NLNFSVDAGKTFAFVGPSGSGKST---IISMVQRLYEPTSGKILLDGHDLKSLQLKWLRE 281
+ + V G+ +G GSG ST ++ G I +G K K+ E
Sbjct: 25 DFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFAEKYPGE 84
Query: 282 QMGLVSQEPALFATSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGG 341
+ VS+E F T L +E ++ A + FV G+
Sbjct: 85 II-YVSEEDVHFPT------LTVRE------TLDFALRCKGNEFVRGI------------ 119
Query: 342 TQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESEL-IVQ--RALEKIMSNRTTIVV 398
SGG+++R++IA A++ +L D +T LD+ + L I++ R + ++ +TT V
Sbjct: 120 ---SGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKCIRTMADVL--KTTTFV 174
Query: 399 AHRLSTVRD-----VDTIMVLKNGQVVESG 423
+ L D D ++VL G+ + G
Sbjct: 175 S--LYQASDEIYDLFDKVLVLYEGRQIYYG 202
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 202 |
| >gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 63.3 bits (154), Expect = 4e-10
Identities = 65/299 (21%), Positives = 124/299 (41%), Gaps = 74/299 (24%)
Query: 173 AAAANIISIIKENSHSSERPGDDGITLPKLAGQIEFSEVCFAYPSRPH----MVFE---- 224
A + I +I++ H + + ++ + + E+ YP PH ++ E
Sbjct: 205 KAVCDTICVIRDGQHVATKDMS-TMSEDDIITMMVGREITSLYPHEPHEIGDVILEARNL 263
Query: 225 --------------NLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPT-SGKILLDGH 269
+++FS+ G+ G G+G++ ++ + Y G + ++G
Sbjct: 264 TCWDVINPHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGK 323
Query: 270 --DLKSLQLKWLREQMGLVSQE-------PALFATSIANNILLG--------------KE 306
D+++ + +R + +V ++ P L + NI L E
Sbjct: 324 PVDIRNPA-QAIRAGIAMVPEDRKRHGIVPIL---GVGKNITLSVLKSFCFKMRIDAAAE 379
Query: 307 DASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILL 366
+ I+ K A F LP G +LSGG +Q+ +A+ +L NP++L+
Sbjct: 380 LQIIGSAIQRLKVKTASPF---LPIG----------RLSGGNQQKAVLAKMLLTNPRVLI 426
Query: 367 LDEATSALD--AESE---LIVQRALEKIMSNRTTIVVAHRLSTVRDV-DTIMVLKNGQV 419
LDE T +D A+ E LI Q A E + IVV+ L+ V + D ++V+ G++
Sbjct: 427 LDEPTRGVDVGAKYEIYKLINQLAQEGV----AIIVVSSELAEVLGLSDRVLVIGEGKL 481
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500 |
| >gnl|CDD|225265 COG2401, COG2401, ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only] | Back alignment and domain information |
|---|
Score = 63.7 bits (155), Expect = 4e-10
Identities = 52/213 (24%), Positives = 92/213 (43%), Gaps = 32/213 (15%)
Query: 222 VFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQR--------LYEPTSGKILLDGHDLKS 273
V NLN + G A VG SG+GK+T++ M+ Y P SGK+ + + + +
Sbjct: 398 VLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKNTVSA 457
Query: 274 LQLKWLREQMGLVSQEPALFATSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGY 333
L + G V+ L + + N + ++ A ++A + +
Sbjct: 458 LIPGEYEPEFGEVTILEHLRSKTGDLNAAVE--------ILNRAGLSDAVLYRRKFSE-- 507
Query: 334 QTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNR 393
LS GQK+R +A+ + P +LL+DE + LD + + V R + ++
Sbjct: 508 ----------LSTGQKERAKLAKLLAERPNVLLIDEFAAHLDELTAVRVARKISELAREA 557
Query: 394 --TTIVVAHRLSTVR--DVDTIMVLKNGQVVES 422
T IVV HR DT++++ G+V +
Sbjct: 558 GITLIVVTHRPEVGNALRPDTLILVGYGKVPVN 590
|
Length = 593 |
| >gnl|CDD|226639 COG4170, SapD, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 61.8 bits (150), Expect = 6e-10
Identities = 63/266 (23%), Positives = 110/266 (41%), Gaps = 61/266 (22%)
Query: 850 ITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLV--------------MRFYDPISGTVL 895
+ + +++ ++ G +VG+SGSGKS + + MRF D
Sbjct: 20 VKAVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICGVNKDNWRVTADRMRFDD------- 72
Query: 896 IDGYDIRTLNLRSLRRKIG----LVQQEPAL-------FSTTIYENI-----------KY 933
D+ L+ R R+ +G ++ QEP + +NI ++
Sbjct: 73 ---IDLLRLSPRERRKLVGHNVSMIFQEPQSCLDPSERVGRQLIQNIPAWTYKGRWWQRF 129
Query: 934 GNEDASEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPS 993
G IEL+ + + P +L+ G+ Q+V IA A+ P
Sbjct: 130 GWRKRRAIELLHRVGIKDHKDIMRSYPY-----------ELTEGECQKVMIAIALANQPR 178
Query: 994 ILLLDEATSALDTASENLIQEALDKLME--GRTTIMVAHRLSTIRN-ADKIAVLQQGKVA 1050
+L+ DE T++++ ++ I L +L + T ++++H L I ADKI VL G+
Sbjct: 179 LLIADEPTNSMEPTTQAQIFRLLSRLNQNSNTTILLISHDLQMISQWADKINVLYCGQTV 238
Query: 1051 EIGSHEQLLRKENGIYKQ-LIRLQQD 1075
E E+L+ + Y Q LIR D
Sbjct: 239 ESAPSEELVTMPHHPYTQALIRAIPD 264
|
Length = 330 |
| >gnl|CDD|130262 TIGR01194, cyc_pep_trnsptr, cyclic peptide transporter | Back alignment and domain information |
|---|
Score = 62.3 bits (151), Expect = 8e-10
Identities = 58/230 (25%), Positives = 95/230 (41%), Gaps = 21/230 (9%)
Query: 201 KLAGQIEFSEVCFAYP---SRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLY 257
K IE +V ++ + G VG +G GKST+ + LY
Sbjct: 333 KSVDSIELKDVHMNPKAPEGSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLY 392
Query: 258 EPTSGKILLDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNILLGKEDASMDRVIEAA 317
P G+ILLDG + + R+ + + LF I + E AS+D
Sbjct: 393 IPQEGEILLDGAAVSADSRDDYRDLFSAIFADFHLFDDLIGPD---EGEHASLD------ 443
Query: 318 KAANAHSFVEGLPDGYQTQVGEGG----TQLSGGQKQRIAIARAVLRNPKILLLDEATSA 373
NA +++ L + ++ +GG T LS GQ++R+A+ A L + ILL DE +
Sbjct: 444 ---NAQQYLQRLEIADKVKIEDGGFSTTTALSTGQQKRLALICAWLEDRPILLFDEWAAD 500
Query: 374 LDAESELIVQRALEKIMSNR--TTIVVAHRLSTVRDVDTIMVLKNGQVVE 421
D + L + + T I+++H D I+ L G +V+
Sbjct: 501 QDPAFKRFFYEELLPDLKRQGKTIIIISHDDQYFELADQIIKLAAGCIVK 550
|
This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake [Transport and binding proteins, Amino acids, peptides and amines, Transport and binding proteins, Other]. Length = 555 |
| >gnl|CDD|213199 cd03232, ABCG_PDR_domain2, Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 59.2 bits (144), Expect = 8e-10
Identities = 52/223 (23%), Positives = 90/223 (40%), Gaps = 60/223 (26%)
Query: 221 MVFENLNFSVDA-----------------GKTFAFVGPSGSGKSTIISMV-QRLYEPT-S 261
+ ++NLN++V G A +G SG+GK+T++ ++ R +
Sbjct: 4 LTWKNLNYTVPVKGGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVIT 63
Query: 262 GKILLDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNILLGKEDASMDRVIEAAKAAN 321
G+IL++G L K + G V Q+ V EA +
Sbjct: 64 GEILINGRPLD----KNFQRSTGYVEQQDVHSPNL---------------TVREALRF-- 102
Query: 322 AHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELI 381
+ + GL S Q++R+ I + P IL LDE TS LD+++
Sbjct: 103 -SALLRGL---------------SVEQRKRLTIGVELAAKPSILFLDEPTSGLDSQAAYN 146
Query: 382 VQRALEKI-MSNRTTIVVAHRLSTV--RDVDTIMVLK-NGQVV 420
+ R L+K+ S + + H+ S D +++LK G+ V
Sbjct: 147 IVRFLKKLADSGQAILCTIHQPSASIFEKFDRLLLLKRGGKTV 189
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 192 |
| >gnl|CDD|236992 PRK11819, PRK11819, putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 61.7 bits (151), Expect = 1e-09
Identities = 46/177 (25%), Positives = 76/177 (42%), Gaps = 54/177 (30%)
Query: 239 VGPSGSGKSTIISMVQRLYEPTSGK-ILLDGHDLKSLQLKWLREQMGLVSQEP------- 290
+G +G+GKST++ ++ + + G+ G ++G + QEP
Sbjct: 39 LGLNGAGKSTLLRIMAGVDKEFEGEARPAPGI------------KVGYLPQEPQLDPEKT 86
Query: 291 -----------------------ALFATSIANNILLGKEDASMDRVIEAAKAANAHSFVE 327
A +A A+ L E + +I+AA A + S +E
Sbjct: 87 VRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLE 146
Query: 328 ------GLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAES 378
P +V T+LSGG+++R+A+ R +L P +LLLDE T+ LDAES
Sbjct: 147 IAMDALRCPPW-DAKV----TKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAES 198
|
Length = 556 |
| >gnl|CDD|182880 PRK10982, PRK10982, galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 61.7 bits (150), Expect = 1e-09
Identities = 59/221 (26%), Positives = 106/221 (47%), Gaps = 19/221 (8%)
Query: 837 LRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLI 896
+ N+S +P + +N+NLKV A++G++G+GKST++ + Y SG++L
Sbjct: 1 MSNISKSFP---GVKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILF 57
Query: 897 DGYDIRTLNLR-SLRRKIGLVQQEPALF-STTIYENIKYGNED-----ASEIELMKATKA 949
G +I + + +L I +V QE L ++ +N+ G + ++ + TKA
Sbjct: 58 QGKEIDFKSSKEALENGISMVHQELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYRDTKA 117
Query: 950 ANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASE 1009
I P + LS Q Q + IA+A N I+++DE TS+L
Sbjct: 118 IFDELDIDIDPR-------AKVATLSVSQMQMIEIAKAFSYNAKIVIMDEPTSSLTEKEV 170
Query: 1010 NLIQEALDKLME-GRTTIMVAHRLSTIRN-ADKIAVLQQGK 1048
N + + KL E G + ++H++ I D+I +L+ G+
Sbjct: 171 NHLFTIIRKLKERGCGIVYISHKMEEIFQLCDEITILRDGQ 211
|
Length = 491 |
| >gnl|CDD|215558 PLN03073, PLN03073, ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Score = 61.0 bits (148), Expect = 2e-09
Identities = 90/314 (28%), Positives = 129/314 (41%), Gaps = 64/314 (20%)
Query: 220 HMVFENLNFSV-------DAGKTFAF------VGPSGSGKSTIIS-MVQRLYE--PTSGK 263
HM EN + SV DA T AF VG +G+GK+T + M + P + +
Sbjct: 179 HM--ENFSISVGGRDLIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAIDGIPKNCQ 236
Query: 264 IL-----LDGHDLKSLQ---------LKWLREQMGLVSQ-----EPALFATSIANNILLG 304
IL + G D +LQ + L E+ LV+Q N
Sbjct: 237 ILHVEQEVVGDDTTALQCVLNTDIERTQLLEEEAQLVAQQRELEFETETGKGKGANKDGV 296
Query: 305 KEDASMDRV---------IEAAKA-ANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAI 354
+DA R+ I+A A A A S + GL + QV T SGG + RIA+
Sbjct: 297 DKDAVSQRLEEIYKRLELIDAYTAEARAASILAGLSFTPEMQVKATKT-FSGGWRMRIAL 355
Query: 355 ARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRDVDTIMVL 414
ARA+ P +LLLDE T+ LD + L ++ L K +T IVV+H + V T ++
Sbjct: 356 ARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLKW--PKTFIVVSHAREFLNTVVTDILH 413
Query: 415 KNGQVVESGTHVDLISKGGEYAALVNLQSSEHLSNPSSICYSGSSRYSSFRDFPSSRRYD 474
+GQ L++ G+Y + E L N S S + F RY+
Sbjct: 414 LHGQ--------KLVTYKGDYDTFERTR-EEQLKNQQKAFESNERSRSHMQAFIDKFRYN 464
Query: 475 VEFESSKRRELQSS 488
+KR L S
Sbjct: 465 -----AKRASLVQS 473
|
Length = 718 |
| >gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Score = 61.5 bits (150), Expect = 2e-09
Identities = 55/191 (28%), Positives = 92/191 (48%), Gaps = 34/191 (17%)
Query: 835 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTV 894
IE N+S + D + ++L+ K+ G + V+G +G+GKST+ ++ P SGT+
Sbjct: 323 IEAENLSKGFG---DKLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTI 379
Query: 895 LIDGYDIRTLNLRSLRRKIGLVQQ-----EPALFSTTIYENIKYGNEDASEIELMKATKA 949
I G + K+ V Q +P + T++E I G + I+L K
Sbjct: 380 KI-GETV----------KLAYVDQSRDALDP---NKTVWEEISGGLD---IIQLGKRE-- 420
Query: 950 ANAHGFISR---MPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDT 1006
+ ++ R Q VG QLSGG++ RV +A+ + ++LLLDE T+ LD
Sbjct: 421 VPSRAYVGRFNFKGSDQQKKVG----QLSGGERNRVHLAKTLKSGGNVLLLDEPTNDLDV 476
Query: 1007 ASENLIQEALD 1017
+ ++EAL
Sbjct: 477 ETLRALEEALL 487
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. Length = 552 |
| >gnl|CDD|184125 PRK13538, PRK13538, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 57.9 bits (141), Expect = 2e-09
Identities = 50/217 (23%), Positives = 89/217 (41%), Gaps = 52/217 (23%)
Query: 835 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTV 894
+E RN++ R + +F L+ ++AG + + G +G+GK++++ ++ P +G V
Sbjct: 2 LEARNLAC---ERDERILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEV 58
Query: 895 LIDGYDIRTLNLRSLRRKIGLVQQEPALFSTTIY--------------ENIKY---GNED 937
L G IR +Q +Y EN+++ +
Sbjct: 59 LWQGEPIR--------------RQRDEYHQDLLYLGHQPGIKTELTALENLRFYQRLHGP 104
Query: 938 ASEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLL 997
+ L +A GF V R QLS GQ++RVA+AR L + +L
Sbjct: 105 GDDEALWEALAQVGLAGF---------EDVPVR--QLSAGQQRRVALARLWLTRAPLWIL 153
Query: 998 DEATSALDTAS----ENLIQEALDKLMEGRTTIMVAH 1030
DE +A+D E L+ + ++ G I+ H
Sbjct: 154 DEPFTAIDKQGVARLEALLAQHAEQ---GGMVILTTH 187
|
Length = 204 |
| >gnl|CDD|182852 PRK10938, PRK10938, putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Score = 60.8 bits (148), Expect = 2e-09
Identities = 69/236 (29%), Positives = 113/236 (47%), Gaps = 43/236 (18%)
Query: 819 QPDDPASKE-VTEIKGNIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKS 877
+PD+P+++ + + I L N Y RP I NL+ +V+ G +VG +G+GKS
Sbjct: 244 EPDEPSARHALPANEPRIVLNNGVVSYNDRP---ILHNLSWQVNPGEHWQIVGPNGAGKS 300
Query: 878 TVISLVMRFYDPISGTVLID---GY--DIRTLNLR---------SLRRKIGLVQQEPAL- 922
T++SL I+G D GY D+ TL R +++ IG V L
Sbjct: 301 TLLSL-------ITG----DHPQGYSNDL-TLFGRRRGSGETIWDIKKHIGYVSSSLHLD 348
Query: 923 --FSTTIYENIKYGNEDASEIELMKATKAAN---AHGFISRMPEGYQSHVGDRGVQ-LSG 976
ST++ I G D+ I + +A A ++ + G D LS
Sbjct: 349 YRVSTSVRNVILSGFFDS--IGIYQAVSDRQQKLAQQWLDIL--GIDKRTADAPFHSLSW 404
Query: 977 GQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLM-EGRTTIM-VAH 1030
GQ++ I RA++K+P++L+LDE LD + L++ +D L+ EG T ++ V+H
Sbjct: 405 GQQRLALIVRALVKHPTLLILDEPLQGLDPLNRQLVRRFVDVLISEGETQLLFVSH 460
|
Length = 490 |
| >gnl|CDD|185049 PRK15093, PRK15093, antimicrobial peptide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 59.0 bits (143), Expect = 4e-09
Identities = 66/283 (23%), Positives = 118/283 (41%), Gaps = 64/283 (22%)
Query: 835 IELRN--VSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLV--------- 883
+++RN + FK + + +++ ++ G +VG+SGSGKS + +
Sbjct: 4 LDIRNLTIEFKTSDGW-VKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWR 62
Query: 884 -----MRFYDPISGTVLIDGYDIRTLNLRSLRRKIG----LVQQEP-------ALFSTTI 927
MRF D D+ L+ R R+ +G ++ QEP +
Sbjct: 63 VTADRMRF----------DDIDLLRLSPRERRKLVGHNVSMIFQEPQSCLDPSERVGRQL 112
Query: 928 YENI-----------KYGNEDASEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSG 976
+NI ++G IEL+ + + P +L+
Sbjct: 113 MQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAMRSFP-----------YELTE 161
Query: 977 GQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLME--GRTTIMVAHRLST 1034
G+ Q+V IA A+ P +L+ DE T+A++ ++ I L +L + T ++++H L
Sbjct: 162 GECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQM 221
Query: 1035 IRN-ADKIAVLQQGKVAEIGSHEQLLRKENGIYKQ-LIRLQQD 1075
+ ADKI VL G+ E ++L+ + Y Q LIR D
Sbjct: 222 LSQWADKINVLYCGQTVETAPSKELVTTPHHPYTQALIRAIPD 264
|
Length = 330 |
| >gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 59.8 bits (145), Expect = 5e-09
Identities = 51/236 (21%), Positives = 104/236 (44%), Gaps = 31/236 (13%)
Query: 836 ELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVL 895
E+RNV+ D +++ V G L G GSG++ +++ + G +
Sbjct: 267 EVRNVT-----SRDRKKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIR 321
Query: 896 IDGYDIRTLN-LRSLRRKIGLV---QQEPALFST-TIYENIKYGNEDASEIELMKATKAA 950
++G DI + L ++++ + + +++ F +I +N+ +K
Sbjct: 322 LNGKDISPRSPLDAVKKGMAYITESRRDNGFFPNFSIAQNMAISRS-------LKDGGYK 374
Query: 951 NAHGFIS-----RMPEGYQ-------SHVGDRGVQLSGGQKQRVAIARAILKNPSILLLD 998
A G R E + V +LSGG +Q+V I++ + P +++ D
Sbjct: 375 GAMGLFHEVDEQRTAENQRELLALKCHSVNQNITELSGGNQQKVLISKWLCCCPEVIIFD 434
Query: 999 EATSALDTASENLIQEALDKLM-EGRTTIMVAHRLSTIRNA-DKIAVLQQGKVAEI 1052
E T +D ++ I + + +L +G+ +MV+ L I D+IAV +G++ +I
Sbjct: 435 EPTRGIDVGAKAEIYKVMRQLADDGKVILMVSSELPEIITVCDRIAVFCEGRLTQI 490
|
Length = 510 |
| >gnl|CDD|236755 PRK10762, PRK10762, D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Score = 59.6 bits (145), Expect = 5e-09
Identities = 58/204 (28%), Positives = 100/204 (49%), Gaps = 17/204 (8%)
Query: 225 NLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQ-M 283
+V G+ A VG +G+GKST++ ++ +Y +G IL G ++ K +E +
Sbjct: 22 GAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQEAGI 81
Query: 284 GLVSQEPALFAT-SIANNILLGKEDASM------DRVIEAAKAANAHSFVEGLPDGYQTQ 336
G++ QE L +IA NI LG+E + ++ A A L
Sbjct: 82 GIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARL---NLRFSSDKL 138
Query: 337 VGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSAL-DAESELIVQRALEKIMSNRTT 395
VGE LS G++Q + IA+ + K++++DE T AL D E+E + + E R
Sbjct: 139 VGE----LSIGEQQMVEIAKVLSFESKVIIMDEPTDALTDTETESLFRVIRELKSQGRGI 194
Query: 396 IVVAHRLSTVRDV-DTIMVLKNGQ 418
+ ++HRL + ++ D + V ++GQ
Sbjct: 195 VYISHRLKEIFEICDDVTVFRDGQ 218
|
Length = 501 |
| >gnl|CDD|184132 PRK13547, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 58.3 bits (141), Expect = 5e-09
Identities = 64/247 (25%), Positives = 105/247 (42%), Gaps = 48/247 (19%)
Query: 218 RPHMVFENLNFSVDAGKTFAFVGPSGSGKSTII-SMVQRLYEP-------TSGKILLDGH 269
R + +L+ ++ G+ A +G +G+GKST++ ++ L +G + L+G
Sbjct: 12 RHRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGE 71
Query: 270 DLKSL---QLKWLREQMGLVSQEPALFATSIANNILLGK--------EDASMDRVIEAAK 318
L ++ +L LR + +Q PA FA S +LLG+ D I
Sbjct: 72 PLAAIDAPRLARLRAVLPQAAQ-PA-FAFSAREIVLLGRYPHARRAGALTHRDGEIAWQA 129
Query: 319 AANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAV---------LRNPKILLLDE 369
A A G VG T LSGG+ R+ AR + + P+ LLLDE
Sbjct: 130 LALA---------GATALVGRDVTTLSGGELARVQFARVLAQLWPPHDAAQPPRYLLLDE 180
Query: 370 ATSALDAESELIVQRALEKIMS-----NRTTIVVAHRLS-TVRDVDTIMVLKNGQVVESG 423
T+ALD + R L+ + N + + H + R D I +L +G +V G
Sbjct: 181 PTAALDLAHQ---HRLLDTVRRLARDWNLGVLAIVHDPNLAARHADRIAMLADGAIVAHG 237
Query: 424 THVDLIS 430
D+++
Sbjct: 238 APADVLT 244
|
Length = 272 |
| >gnl|CDD|184132 PRK13547, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 57.5 bits (139), Expect = 9e-09
Identities = 64/246 (26%), Positives = 106/246 (43%), Gaps = 48/246 (19%)
Query: 851 TIFENLNLKVSAGRSLAVVGQSGSGKSTVI-SLVMRFYDP-------ISGTVLIDGYDIR 902
I +L+L++ GR A++G++G+GKST++ +L ++G V ++G +
Sbjct: 15 AILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLA 74
Query: 903 TLNLRSL-RRKIGLVQQ-EPAL-FSTTIYENIKYGNEDASEIELMKATKAANAHGFISRM 959
++ L R + L Q +PA FS A EI L+ A G ++
Sbjct: 75 AIDAPRLARLRAVLPQAAQPAFAFS-------------AREIVLLGRYPHARRAGALTHR 121
Query: 960 PEGYQSH----------VGDRGVQLSGGQKQRVAIARAILK---------NPSILLLDEA 1000
VG LSGG+ RV AR + + P LLLDE
Sbjct: 122 DGEIAWQALALAGATALVGRDVTTLSGGELARVQFARVLAQLWPPHDAAQPPRYLLLDEP 181
Query: 1001 TSALDTASENLIQEALDKLME----GRTTIMVAHRLSTIRNADKIAVLQQGKVAEIGSHE 1056
T+ALD A ++ + + + +L G I+ L+ R+AD+IA+L G + G+
Sbjct: 182 TAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPNLAA-RHADRIAMLADGAIVAHGAPA 240
Query: 1057 QLLRKE 1062
+L
Sbjct: 241 DVLTPA 246
|
Length = 272 |
| >gnl|CDD|215599 PLN03140, PLN03140, ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Score = 59.5 bits (144), Expect = 9e-09
Identities = 42/128 (32%), Positives = 65/128 (50%), Gaps = 15/128 (11%)
Query: 303 LGKEDASM--DRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLR 360
+ KE+ M D V+E + N + GLP G T LS Q++R+ IA ++
Sbjct: 986 VSKEEKMMFVDEVMELVELDNLKDAIVGLP---------GVTGLSTEQRKRLTIAVELVA 1036
Query: 361 NPKILLLDEATSALDAESELIVQRALEKIM-SNRTTIVVAHRLS--TVRDVDTIMVLK-N 416
NP I+ +DE TS LDA + IV R + + + RT + H+ S D ++++K
Sbjct: 1037 NPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRG 1096
Query: 417 GQVVESGT 424
GQV+ SG
Sbjct: 1097 GQVIYSGP 1104
|
Length = 1470 |
| >gnl|CDD|233206 TIGR00954, 3a01203, Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei | Back alignment and domain information |
|---|
Score = 59.0 bits (143), Expect = 9e-09
Identities = 52/190 (27%), Positives = 84/190 (44%), Gaps = 22/190 (11%)
Query: 854 ENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRKI 913
E+L+ +V +G +L + G +G GKS++ ++ + G + + K+
Sbjct: 469 ESLSFEVPSGNNLLICGPNGCGKSSLFRILGELWPVYGGRLTKPA-----------KGKL 517
Query: 914 GLVQQEPALFSTTIYENIKY--GNED-----ASEIELMKATKAANAHGFISRMPEGYQSH 966
V Q P + T+ + I Y +ED S+ +L + + R EG S
Sbjct: 518 FYVPQRPYMTLGTLRDQIIYPDSSEDMKRRGLSDKDLEQILDNVQLTHILER--EGGWSA 575
Query: 967 VGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLMEGRTTI 1026
V D LSGG+KQR+A+AR P +LDE TSA+ E + + G T
Sbjct: 576 VQDWMDVLSGGEKQRIAMARLFYHKPQFAILDECTSAVSVDVEGYMYRLCREF--GITLF 633
Query: 1027 MVAHRLSTIR 1036
V+HR S +
Sbjct: 634 SVSHRKSLWK 643
|
[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 659 |
| >gnl|CDD|213188 cd03221, ABCF_EF-3, ATP-binding cassette domain of elongation factor 3, subfamily F | Back alignment and domain information |
|---|
Score = 54.4 bits (132), Expect = 1e-08
Identities = 19/60 (31%), Positives = 37/60 (61%), Gaps = 3/60 (5%)
Query: 835 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTV 894
IEL N+S Y + + ++++L ++ G + +VG++G+GKST++ L+ +P G V
Sbjct: 1 IELENLSKTYGGKL---LLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIV 57
|
Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. Length = 144 |
| >gnl|CDD|181965 PRK09580, sufC, cysteine desulfurase ATPase component; Reviewed | Back alignment and domain information |
|---|
Score = 56.0 bits (135), Expect = 2e-08
Identities = 66/251 (26%), Positives = 107/251 (42%), Gaps = 41/251 (16%)
Query: 849 DITIFENLNLKVSAGRSLAVVGQSGSGKSTV-ISLVMRF-YDPISGTVLIDGYDIRTLNL 906
D I LNL+V G A++G +GSGKST+ +L R Y+ GTV G D+ L+
Sbjct: 13 DKAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSP 72
Query: 907 RSLRRK-IGLVQQEPA---------LFSTTIYENIKYGNEDA-----------SEIELMK 945
+ I + Q P T + Y ++ +I L+K
Sbjct: 73 EDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLK 132
Query: 946 ATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALD 1005
MPE + + G SGG+K+R I + + P + +LDE+ S LD
Sbjct: 133 -------------MPEDLLTRSVNVG--FSGGEKKRNDILQMAVLEPELCILDESDSGLD 177
Query: 1006 TASENLIQEALDKLMEG-RTTIMVAH--RLSTIRNADKIAVLQQGKVAEIGSHEQLLRKE 1062
+ ++ + ++ L +G R+ I+V H R+ D + VL QG++ + G + + E
Sbjct: 178 IDALKIVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSGDFTLVKQLE 237
Query: 1063 NGIYKQLIRLQ 1073
Y L Q
Sbjct: 238 EQGYGWLTEQQ 248
|
Length = 248 |
| >gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
Score = 53.9 bits (129), Expect = 2e-08
Identities = 42/182 (23%), Positives = 59/182 (32%), Gaps = 61/182 (33%)
Query: 863 GRSLAVVGQSGSGKSTVISLVMRFYDPISGTV-LIDGYDIRTLNLRSLRRKIGLVQQEPA 921
G + +VG GSGK+T+ + R P G V IDG DI L L I
Sbjct: 2 GEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLII-------- 53
Query: 922 LFSTTIYENIKYGNEDASEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQR 981
VG + SG + R
Sbjct: 54 ---------------------------------------------VGGKKASGSGELRLR 68
Query: 982 VAIARAILKNPSILLLDEATSALDTASENLIQEALD-------KLMEGRTTIMVAHRLST 1034
+A+A A P +L+LDE TS LD E L+ + K + T I+ +
Sbjct: 69 LALALARKLKPDVLILDEITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVILTTNDEKD 128
Query: 1035 IR 1036
+
Sbjct: 129 LG 130
|
AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. Length = 148 |
| >gnl|CDD|182880 PRK10982, PRK10982, galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 57.8 bits (140), Expect = 2e-08
Identities = 61/260 (23%), Positives = 112/260 (43%), Gaps = 46/260 (17%)
Query: 826 KEVT-EIKGNIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVM 884
EV E++ LR S + +++ + G L + G G+ ++ ++ +
Sbjct: 247 GEVILEVRNLTSLRQPSIR-----------DVSFDLHKGEILGIAGLVGAKRTDIVETLF 295
Query: 885 RFYDPISGTVLIDGYDIRTLN-LRSLRRKIGLVQQEPALFSTTIYENIKYGNEDASEIEL 943
+ +GT+ + G I N ++ LV +E ST IY + G S I
Sbjct: 296 GIREKSAGTITLHGKKINNHNANEAINHGFALVTEERR--STGIYAYLDIGFN--SLISN 351
Query: 944 MKATKAANAHGFIS--RMPE--------------GYQSHVGDRGVQLSGGQKQRVAIARA 987
++ K N G + RM G+++ +G LSGG +Q+V I R
Sbjct: 352 IRNYK--NKVGLLDNSRMKSDTQWVIDSMRVKTPGHRTQIG----SLSGGNQQKVIIGRW 405
Query: 988 ILKNPSILLLDEATSALDTASENLIQEALDKLM-EGRTTIMVAHRLSTIRN-ADKIAVLQ 1045
+L P IL+LDE T +D ++ I + + +L + + I+++ + + D+I V+
Sbjct: 406 LLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKKDKGIIIISSEMPELLGITDRILVMS 465
Query: 1046 QGKVAEI-----GSHEQLLR 1060
G VA I + ++LR
Sbjct: 466 NGLVAGIVDTKTTTQNEILR 485
|
Length = 491 |
| >gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Score = 57.3 bits (139), Expect = 3e-08
Identities = 50/196 (25%), Positives = 87/196 (44%), Gaps = 42/196 (21%)
Query: 863 GRSLAVVGQSGSGKSTVISLVM--------RFYDPISGTVLIDGY----------DIRTL 904
G+ + ++G +G GKST + ++ R+ DP S +I + +
Sbjct: 100 GKVVGILGPNGIGKSTALKILAGELKPNLGRYEDPPSWDEVIKRFRGTELQNYFKKLYEG 159
Query: 905 NLRSLRRKIGLVQQEPALFSTTIYENIKYGNEDASEIELMKATKAANAHGFISRMPEGYQ 964
LR++ K V P + + E +K +E E+++ N
Sbjct: 160 ELRAVH-KPQYVDLIPKVVKGKVGELLKKVDERGKFDEVVERLGLEN------------- 205
Query: 965 SHVGDRGV-QLSGGQKQRVAIARAILKNPSILLLDEATSALDT----ASENLIQEALDKL 1019
V DR V +LSGG+ QRVAIA A+L++ + DE +S LD + +I+E +
Sbjct: 206 --VLDRDVSELSGGELQRVAIAAALLRDADVYFFDEPSSYLDIRQRLNAARVIRELAE-- 261
Query: 1020 MEGRTTIMVAHRLSTI 1035
+G+ I+V H L+ +
Sbjct: 262 -DGKYVIVVEHDLAVL 276
|
Length = 591 |
| >gnl|CDD|184129 PRK13543, PRK13543, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 55.2 bits (133), Expect = 3e-08
Identities = 51/177 (28%), Positives = 77/177 (43%), Gaps = 24/177 (13%)
Query: 847 RPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNL 906
R + +F L+ V AG +L V G +G+GK+T++ ++ SG + IDG +
Sbjct: 21 RNEEPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRGD- 79
Query: 907 RSLRRKIGLVQQEPALFSTTIYENIKYGNEDASEIELMKATKAANAHGF-ISRMPEGYQS 965
RS R + + P L D S +E + HG +MP +
Sbjct: 80 RS--RFMAYLGHLPGL------------KADLSTLENLHFLCG--LHGRRAKQMPGSALA 123
Query: 966 HVGDRGV------QLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEAL 1016
VG G QLS GQK+R+A+AR L + LLDE + LD L+ +
Sbjct: 124 IVGLAGYEDTLVRQLSAGQKKRLALARLWLSPAPLWLLDEPYANLDLEGITLVNRMI 180
|
Length = 214 |
| >gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 56.9 bits (138), Expect = 4e-08
Identities = 53/227 (23%), Positives = 110/227 (48%), Gaps = 17/227 (7%)
Query: 836 ELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKS-TVISLVMRFYDPISGTV 894
E+RN++ PV P I ++++ + G L + G G+G++ V L + G +
Sbjct: 261 EVRNLTAWDPVNPHIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWEGEI 320
Query: 895 LIDGYDIRTLNLR-SLRRKIGLVQQE-------PALFSTTIYENIKYGNED--ASEIELM 944
IDG ++ N + ++ + I +V ++ P + + +NI D +
Sbjct: 321 FIDGKPVKIRNPQQAIAQGIAMVPEDRKRDGIVPVM---GVGKNITLAALDRFTGGSRID 377
Query: 945 KATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSAL 1004
A + I R+ + + +LSGG +Q+ +A+ +L NP IL+LDE T +
Sbjct: 378 DAAELKTILESIQRL-KVKTASPELAIARLSGGNQQKAVLAKCLLLNPKILILDEPTRGI 436
Query: 1005 DTASENLIQEALDKLM-EGRTTIMVAHRLSTIRN-ADKIAVLQQGKV 1049
D ++ I + +++L+ +G I+++ L + +D++ V+ +GK+
Sbjct: 437 DVGAKYEIYKLINQLVQQGVAIIVISSELPEVLGLSDRVLVMHEGKL 483
|
Length = 506 |
| >gnl|CDD|182880 PRK10982, PRK10982, galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 56.3 bits (136), Expect = 5e-08
Identities = 54/219 (24%), Positives = 100/219 (45%), Gaps = 37/219 (16%)
Query: 224 ENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLK-SLQLKWLREQ 282
+++F + G+ G G+ ++ I+ + + E ++G I L G + + +
Sbjct: 265 RDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKINNHNANEAINHG 324
Query: 283 MGLVSQE---PALFA------TSIANNI--------LLGKEDASMDR--VIEAAKAANAH 323
LV++E ++A S+ +NI LL D VI++ +
Sbjct: 325 FALVTEERRSTGIYAYLDIGFNSLISNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVKTP- 383
Query: 324 SFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALD--AESELI 381
G++TQ+G LSGG +Q++ I R +L P+IL+LDE T +D A+ E I
Sbjct: 384 --------GHRTQIG----SLSGGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFE-I 430
Query: 382 VQRALEKIMSNRTTIVVAHRLSTVRDV-DTIMVLKNGQV 419
Q E ++ I+++ + + + D I+V+ NG V
Sbjct: 431 YQLIAELAKKDKGIIIISSEMPELLGITDRILVMSNGLV 469
|
Length = 491 |
| >gnl|CDD|233206 TIGR00954, 3a01203, Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei | Back alignment and domain information |
|---|
Score = 56.7 bits (137), Expect = 5e-08
Identities = 54/211 (25%), Positives = 93/211 (44%), Gaps = 35/211 (16%)
Query: 206 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQ--------RLY 257
I+F + P+ ++ E+L+F V +G GP+G GKS++ ++ RL
Sbjct: 452 IKFENIPLVTPNGDVLI-ESLSFEVPSGNNLLICGPNGCGKSSLFRILGELWPVYGGRLT 510
Query: 258 EPTSGKILLDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNILLGKEDASMDRVIEAA 317
+P GK+ + L LR+Q+ ++ S + G D ++++++
Sbjct: 511 KPAKGKLFYVPQR-PYMTLGTLRDQI--------IYPDSSEDMKRRGLSDKDLEQILDNV 561
Query: 318 KAANAHSFVEGLPDGYQTQVGEGGTQ-----LSGGQKQRIAIARAVLRNPKILLLDEATS 372
+ L + + G Q LSGG+KQRIA+AR P+ +LDE TS
Sbjct: 562 Q----------LTHILEREGGWSAVQDWMDVLSGGEKQRIAMARLFYHKPQFAILDECTS 611
Query: 373 ALDAESELIVQRALEKIMSNRTTIVVAHRLS 403
A+ + E + R + T V+HR S
Sbjct: 612 AVSVDVEGYMYRLCREF--GITLFSVSHRKS 640
|
[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 659 |
| >gnl|CDD|213203 cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-binding cassette domain 1 of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 55.1 bits (133), Expect = 5e-08
Identities = 49/195 (25%), Positives = 82/195 (42%), Gaps = 44/195 (22%)
Query: 863 GRSLAVVGQSGSGKSTVISLVM--------RFYDPISGTVLIDGY----------DIRTL 904
G+ L +VG +G GKST + ++ +F DP ++D + +
Sbjct: 26 GQVLGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWDEILDEFRGSELQNYFTKLLEG 85
Query: 905 NLRSLRRKIGLVQQEPALFSTTIYENIKYGNEDASEIELMKATKAANAHGFISRMPEGYQ 964
+++ + K V P + E +K +E EL+ +
Sbjct: 86 DVKVIV-KPQYVDLIPKAVKGKVGELLKKKDERGKLDELVDQLEL--------------- 129
Query: 965 SHVGDRGV-QLSGGQKQRVAIARAILKNPSILLLDEATSALD-----TASENLIQEALDK 1018
HV DR + QLSGG+ QRVAIA A+ ++ DE +S LD A+ LI+E +
Sbjct: 130 RHVLDRNIDQLSGGELQRVAIAAALARDADFYFFDEPSSYLDIKQRLNAAR-LIRELAE- 187
Query: 1019 LMEGRTTIMVAHRLS 1033
+ ++V H L+
Sbjct: 188 --DDNYVLVVEHDLA 200
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 255 |
| >gnl|CDD|184127 PRK13540, PRK13540, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 54.2 bits (130), Expect = 5e-08
Identities = 46/192 (23%), Positives = 84/192 (43%), Gaps = 23/192 (11%)
Query: 210 EVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGH 269
E+ F Y +P + + ++F + AG G +G+GK+T++ ++ L P G+IL +
Sbjct: 6 ELDFDYHDQP--LLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQ 63
Query: 270 DLKSLQLKWLREQMGLVSQEPALFATSIANNILLGKEDASMDRVIEAAKAANAHSFVEGL 329
+K L ++Q+ V + I + L +E+ D + + A
Sbjct: 64 SIKK-DLCTYQKQLCFVGHR-----SGINPYLTL-RENCLYD-IHFSPGAVGITELCRLF 115
Query: 330 PDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKI 389
+ G LS GQK+++A+ R + K+ LLDE ALD + +L I
Sbjct: 116 SLEHLIDYPCG--LLSSGQKRQVALLRLWMSKAKLWLLDEPLVALD-------ELSLLTI 166
Query: 390 MSNRTTIVVAHR 401
++ + HR
Sbjct: 167 ITK----IQEHR 174
|
Length = 200 |
| >gnl|CDD|182880 PRK10982, PRK10982, galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 56.3 bits (136), Expect = 6e-08
Identities = 59/222 (26%), Positives = 102/222 (45%), Gaps = 26/222 (11%)
Query: 224 ENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQM 283
+N+N V A +G +G+GKST++ + +Y+ SG IL G K + K +E +
Sbjct: 15 DNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQG---KEIDFKSSKEAL 71
Query: 284 ----GLVSQEPALF-ATSIANNILLGKED-----ASMDRVIEAAKAANAHSFVEGLPDGY 333
+V QE L S+ +N+ LG+ D++ KA ++ P
Sbjct: 72 ENGISMVHQELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDIDPR-- 129
Query: 334 QTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNR 393
LS Q Q I IA+A N KI+++DE TS+L + + + K+
Sbjct: 130 -----AKVATLSVSQMQMIEIAKAFSYNAKIVIMDEPTSSLTEKEVNHLFTIIRKLKERG 184
Query: 394 TTIV-VAHRLSTVRDV-DTIMVLKNGQVVE----SGTHVDLI 429
IV ++H++ + + D I +L++GQ + +G +D I
Sbjct: 185 CGIVYISHKMEEIFQLCDEITILRDGQWIATQPLAGLTMDKI 226
|
Length = 491 |
| >gnl|CDD|213189 cd03222, ABC_RNaseL_inhibitor, ATP-binding cassette domain of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 53.3 bits (128), Expect = 6e-08
Identities = 28/77 (36%), Positives = 44/77 (57%), Gaps = 2/77 (2%)
Query: 344 LSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIM--SNRTTIVVAHR 401
LSGG+ QR+AIA A+LRN L DE ++ LD E L RA+ ++ +T +VV H
Sbjct: 72 LSGGELQRVAIAAALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHD 131
Query: 402 LSTVRDVDTIMVLKNGQ 418
L+ + + + + G+
Sbjct: 132 LAVLDYLSDRIHVFEGE 148
|
The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 177 |
| >gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 55.9 bits (135), Expect = 7e-08
Identities = 55/222 (24%), Positives = 109/222 (49%), Gaps = 18/222 (8%)
Query: 225 NLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLK-SLQLKWLREQM 283
+++FSV G+ F G GSG++ +++ + + + G+I L+G D+ L +++ M
Sbjct: 281 DISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRSPLDAVKKGM 340
Query: 284 GLVSQ---EPALFAT-SIANNIL------LGKEDASMDRVIEAAKAANAHSFVEGLPDGY 333
+++ + F SIA N+ G +M E + A + E L
Sbjct: 341 AYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKC 400
Query: 334 QTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALD--AESELI-VQRALEKIM 390
+ V + T+LSGG +Q++ I++ + P++++ DE T +D A++E+ V R L
Sbjct: 401 HS-VNQNITELSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLAD-- 457
Query: 391 SNRTTIVVAHRLSTVRDV-DTIMVLKNGQVVESGTHVDLISK 431
+ ++V+ L + V D I V G++ + T+ D +S+
Sbjct: 458 DGKVILMVSSELPEIITVCDRIAVFCEGRLTQILTNRDDMSE 499
|
Length = 510 |
| >gnl|CDD|213188 cd03221, ABCF_EF-3, ATP-binding cassette domain of elongation factor 3, subfamily F | Back alignment and domain information |
|---|
Score = 52.5 bits (127), Expect = 7e-08
Identities = 14/62 (22%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
Query: 206 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKIL 265
IE + Y + + ++++ +++ G VG +G+GKST++ ++ EP G +
Sbjct: 1 IELENLSKTYGGKL--LLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVT 58
Query: 266 LD 267
Sbjct: 59 WG 60
|
Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. Length = 144 |
| >gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Score = 56.0 bits (136), Expect = 8e-08
Identities = 28/74 (37%), Positives = 40/74 (54%), Gaps = 3/74 (4%)
Query: 343 QLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRL 402
+LSGG+ QR+AIA A+LR+ DE TS LD L V R + ++ + +VV H L
Sbjct: 212 ELSGGELQRVAIAAALLRDADFYFFDEPTSYLDIRQRLNVARLIRELAEGKYVLVVEHDL 271
Query: 403 STVRD--VDTIMVL 414
V D D + +
Sbjct: 272 -AVLDYLADNVHIA 284
|
Length = 590 |
| >gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Score = 55.6 bits (135), Expect = 1e-07
Identities = 48/201 (23%), Positives = 83/201 (41%), Gaps = 53/201 (26%)
Query: 860 VSAGRSLAVVGQSGSGKSTVISL--------------------VMRFYDPISGTVLIDGY 899
G+ ++G +G GK+T + + V++ + GT L + Y
Sbjct: 96 PKEGKVTGILGPNGIGKTTAVKILSGELIPNLGDYEEEPSWDEVLKRF---RGTELQN-Y 151
Query: 900 --DIRTLNLRSLRRKIGLVQQEPALFSTTIYENIKYGNEDASEIELMKATKAANAHGFIS 957
+ ++ + K V P +F + E +K +E E+++
Sbjct: 152 FKKLYNGEIKVVH-KPQYVDLIPKVFKGKVRELLKKVDERGKLDEVVERLGL-------- 202
Query: 958 RMPEGYQSHVGDRGV-QLSGGQKQRVAIARAILKNPSILLLDEATSALD-----TASENL 1011
++ DR + +LSGG+ QRVAIA A+L++ DE TS LD + L
Sbjct: 203 -------ENILDRDISELSGGELQRVAIAAALLRDADFYFFDEPTSYLDIRQRLNVA-RL 254
Query: 1012 IQEALDKLMEGRTTIMVAHRL 1032
I+E L EG+ ++V H L
Sbjct: 255 IRE----LAEGKYVLVVEHDL 271
|
Length = 590 |
| >gnl|CDD|226639 COG4170, SapD, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 54.1 bits (130), Expect = 2e-07
Identities = 27/91 (29%), Positives = 53/91 (58%), Gaps = 3/91 (3%)
Query: 343 QLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNRTT--IVVAH 400
+L+ G+ Q++ IA A+ P++L+ DE T++++ ++ + R L ++ N T ++++H
Sbjct: 158 ELTEGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLSRLNQNSNTTILLISH 217
Query: 401 RLSTVRD-VDTIMVLKNGQVVESGTHVDLIS 430
L + D I VL GQ VES +L++
Sbjct: 218 DLQMISQWADKINVLYCGQTVESAPSEELVT 248
|
Length = 330 |
| >gnl|CDD|182852 PRK10938, PRK10938, putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Score = 54.3 bits (131), Expect = 2e-07
Identities = 62/216 (28%), Positives = 112/216 (51%), Gaps = 21/216 (9%)
Query: 198 TLPKLAGQIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQ--- 254
LP +I + +Y RP + NL++ V+ G+ + VGP+G+GKST++S++
Sbjct: 253 ALPANEPRIVLNNGVVSYNDRP--ILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDH 310
Query: 255 -RLYEPTSGKILLDGHDLKSLQLKW-LREQMGLVSQEPAL---FATSIANNILLGKEDA- 308
+ Y S + L G S + W +++ +G VS L +TS+ N IL G D+
Sbjct: 311 PQGY---SNDLTLFGRRRGSGETIWDIKKHIGYVSSSLHLDYRVSTSVRNVILSGFFDSI 367
Query: 309 SMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQ-LSGGQKQRIA-IARAVLRNPKILL 366
+ + + + A +++ L G + + LS GQ QR+A I RA++++P +L+
Sbjct: 368 GIYQAVSDRQQKLAQQWLDIL--GIDKRTADAPFHSLSWGQ-QRLALIVRALVKHPTLLI 424
Query: 367 LDEATSALDAESELIVQRALEKIMSNRTT--IVVAH 400
LDE LD + +V+R ++ ++S T + V+H
Sbjct: 425 LDEPLQGLDPLNRQLVRRFVDVLISEGETQLLFVSH 460
|
Length = 490 |
| >gnl|CDD|185049 PRK15093, PRK15093, antimicrobial peptide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 53.7 bits (129), Expect = 2e-07
Identities = 29/91 (31%), Positives = 55/91 (60%), Gaps = 3/91 (3%)
Query: 343 QLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKI-MSNRTTI-VVAH 400
+L+ G+ Q++ IA A+ P++L+ DE T+A++ ++ + R L ++ +N TTI +++H
Sbjct: 158 ELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISH 217
Query: 401 RLSTVRD-VDTIMVLKNGQVVESGTHVDLIS 430
L + D I VL GQ VE+ +L++
Sbjct: 218 DLQMLSQWADKINVLYCGQTVETAPSKELVT 248
|
Length = 330 |
| >gnl|CDD|184131 PRK13546, PRK13546, teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 52.9 bits (127), Expect = 2e-07
Identities = 61/232 (26%), Positives = 106/232 (45%), Gaps = 47/232 (20%)
Query: 854 ENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRKI 913
++++LK G + +VG +GSGKST+ +++ P G V +G ++ + + +
Sbjct: 41 DDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDRNG-EVSVIAISA----- 94
Query: 914 GLVQQEPALFSTTIYENIKYGNEDASEIELM----KATKAANAHGFISRMPEGYQ-SHVG 968
GL Q T ENI++ ++ M K KA P+ + S +G
Sbjct: 95 GLSGQ------LTGIENIEF------KMLCMGFKRKEIKAM--------TPKIIEFSELG 134
Query: 969 DRGVQ----LSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLME--- 1021
+ Q S G + ++ + I NP IL++DEA S D + Q+ LDK+ E
Sbjct: 135 EFIYQPVKKYSSGMRAKLGFSINITVNPDILVIDEALSVGD---QTFAQKCLDKIYEFKE 191
Query: 1022 -GRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGSHEQLLRKENGIYKQLIR 1071
+T V+H L +R KIA ++ GK+ + G + +L K Y+ +
Sbjct: 192 QNKTIFFVSHNLGQVRQFCTKIAWIEGGKLKDYGELDDVLPK----YEAFLN 239
|
Length = 264 |
| >gnl|CDD|182852 PRK10938, PRK10938, putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Score = 52.7 bits (127), Expect = 8e-07
Identities = 60/233 (25%), Positives = 101/233 (43%), Gaps = 19/233 (8%)
Query: 857 NLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRKIGLV 916
+L ++AG S A VG +GSGKS + + +SG I L+ L++ LV
Sbjct: 23 SLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGERQSQFSHITRLSFEQLQK---LV 79
Query: 917 QQEPALFSTTIYENIKYGNED----ASEIELMKATKAANAHGFISRMPEGYQSHVGDRGV 972
E + + + G +D +EI + A + G + + R
Sbjct: 80 SDE---WQRNNTDMLSPGEDDTGRTTAEIIQDEVKDPARCEQLAQQF--GITALLDRRFK 134
Query: 973 QLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLM-EGRTTIMVAHR 1031
LS G+ ++ + +A++ P +L+LDE LD AS + E L L G T ++V +R
Sbjct: 135 YLSTGETRKTLLCQALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQSGITLVLVLNR 194
Query: 1032 LSTIRN-ADKIAVLQQGKVAEIGSHEQLLRKENGIYKQLIRLQQDKN---PEA 1080
I + VL +AE G E++L++ + QL +Q + PE
Sbjct: 195 FDEIPDFVQFAGVLADCTLAETGEREEILQQ--ALVAQLAHSEQLEGVQLPEP 245
|
Length = 490 |
| >gnl|CDD|236729 PRK10636, PRK10636, putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 52.1 bits (125), Expect = 1e-06
Identities = 55/217 (25%), Positives = 99/217 (45%), Gaps = 51/217 (23%)
Query: 849 DITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRS 908
D I +++ L + G + ++G++G+GKST+I L+ P+SG
Sbjct: 324 DRIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSG---------------- 367
Query: 909 LRRKIGLVQQEPALFSTTIYENIKYGNEDASEIELMKATKAANAHGFISRMPE------- 961
+IGL + IK G ++E ++A ++ H ++R+
Sbjct: 368 ---EIGLAK------------GIKLGYFAQHQLEFLRADESPLQH--LARLAPQELEQKL 410
Query: 962 -------GYQ-SHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQ 1013
G+Q V + + SGG+K R+ +A + + P++LLLDE T+ LD +
Sbjct: 411 RDYLGGFGFQGDKVTEETRRFSGGEKARLVLALIVWQRPNLLLLDEPTNHLDLDMRQALT 470
Query: 1014 EALDKLMEGRTTIMVAHRLSTIRN-ADKIAVLQQGKV 1049
EAL EG ++V+H +R+ D + ++ GKV
Sbjct: 471 EALIDF-EG-ALVVVSHDRHLLRSTTDDLYLVHDGKV 505
|
Length = 638 |
| >gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 51.5 bits (124), Expect = 2e-06
Identities = 67/301 (22%), Positives = 122/301 (40%), Gaps = 78/301 (25%)
Query: 173 AAAANIISIIKENSHSSERPGDDGITLPKLAGQIEFSEVCFAYPSRPH----MVFE---- 224
A ++ I +I++ H RP G+T + + E+ YP PH ++ E
Sbjct: 207 KAISDTICVIRDGRHIGTRPAA-GMTEDDIITMMVGRELTALYPREPHTIGEVILEVRNL 265
Query: 225 --------------NLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEP----TSGKILL 266
+++FS+ G+ G G+G++ +VQ L+ G+I +
Sbjct: 266 TAWDPVNPHIKRVDDVSFSLRRGEILGIAGLVGAGRT---ELVQCLFGAYPGRWEGEIFI 322
Query: 267 DGHDLK-SLQLKWLREQMGLVSQE-------PALFATSIANNILL--------------G 304
DG +K + + + + +V ++ P + + NI L
Sbjct: 323 DGKPVKIRNPQQAIAQGIAMVPEDRKRDGIVPVM---GVGKNITLAALDRFTGGSRIDDA 379
Query: 305 KEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKI 364
E ++ I+ K A L +LSGG +Q+ +A+ +L NPKI
Sbjct: 380 AELKTILESIQRLKVKTASPE---LAIA----------RLSGGNQQKAVLAKCLLLNPKI 426
Query: 365 LLLDEATSALD--AESE---LIVQRALEKIMSNRTTIVVAHRLSTVRDV-DTIMVLKNGQ 418
L+LDE T +D A+ E LI Q + + IV++ L V + D ++V+ G+
Sbjct: 427 LILDEPTRGIDVGAKYEIYKLINQLVQQGV----AIIVISSELPEVLGLSDRVLVMHEGK 482
Query: 419 V 419
+
Sbjct: 483 L 483
|
Length = 506 |
| >gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Score = 51.1 bits (123), Expect = 2e-06
Identities = 24/63 (38%), Positives = 37/63 (58%), Gaps = 1/63 (1%)
Query: 343 QLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSN-RTTIVVAHR 401
+LSGG+ QR+AIA A+LR+ + DE +S LD L R + ++ + + IVV H
Sbjct: 213 ELSGGELQRVAIAAALLRDADVYFFDEPSSYLDIRQRLNAARVIRELAEDGKYVIVVEHD 272
Query: 402 LST 404
L+
Sbjct: 273 LAV 275
|
Length = 591 |
| >gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Score = 52.0 bits (125), Expect = 2e-06
Identities = 67/249 (26%), Positives = 114/249 (45%), Gaps = 52/249 (20%)
Query: 829 TEIKGNI-ELRNVSFKYPVRP-DITIFENLNLKVSAGRSLAVVGQSGSGKSTVIS-LVMR 885
E +I RN++++ ++ I N++ V G A++G SG+GK+T+++ L R
Sbjct: 753 KESGEDIFHWRNLTYEVKIKKEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAER 812
Query: 886 FYDPISGTVLIDGYDIRTLNLR----SLRRKIGLVQQ-----------EPALFST----- 925
++ V+ G R +N R S +R IG VQQ E FS
Sbjct: 813 ----VTTGVITGG--DRLVNGRPLDSSFQRSIGYVQQQDLHLPTSTVRESLRFSAYLRQP 866
Query: 926 ---TIYENIKYGNEDASEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRV 982
+ E ++Y E I+L++ A+A VG G L+ Q++R+
Sbjct: 867 KSVSKSEKMEYVEE---VIKLLEMESYADAV-------------VGVPGEGLNVEQRKRL 910
Query: 983 AIARAILKNPSILL-LDEATSALDTASENLIQEALDKLME-GRTTIMVAHRLSTIRNA-- 1038
I ++ P +LL LDE TS LD+ + I + + KL + G+ + H+ S I
Sbjct: 911 TIGVELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLADHGQAILCTIHQPSAILFEEF 970
Query: 1039 DKIAVLQQG 1047
D++ +LQ+G
Sbjct: 971 DRLLLLQKG 979
|
[Transport and binding proteins, Other]. Length = 1394 |
| >gnl|CDD|184130 PRK13545, tagH, teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 51.8 bits (124), Expect = 2e-06
Identities = 58/236 (24%), Positives = 97/236 (41%), Gaps = 35/236 (14%)
Query: 220 HMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWL 279
H N++F V G+ +G +GSGKST+ +++ + P G + + G
Sbjct: 37 HYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKG----------- 85
Query: 280 REQMGLVSQEPALFATSIA-NNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVG 338
AL A S N L G E+ + ++ + + + +G
Sbjct: 86 ---------SAALIAISSGLNGQLTGIENIELKGLMMGLTKEKIKEIIPEIIEF--ADIG 134
Query: 339 EGGTQ----LSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKI----M 390
+ Q S G K R+ A +V NP IL++DEA S D + ++ L+K+
Sbjct: 135 KFIYQPVKTYSSGMKSRLGFAISVHINPDILVIDEALSVGD---QTFTKKCLDKMNEFKE 191
Query: 391 SNRTTIVVAHRLSTVRDVDTIMV-LKNGQVVESGTHVDLISKGGEYAALVNLQSSE 445
+T ++H LS V+ T + L GQV E G +++ E+ N S E
Sbjct: 192 QGKTIFFISHSLSQVKSFCTKALWLHYGQVKEYGDIKEVVDHYDEFLKKYNQMSVE 247
|
Length = 549 |
| >gnl|CDD|184130 PRK13545, tagH, teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 51.4 bits (123), Expect = 2e-06
Identities = 63/233 (27%), Positives = 106/233 (45%), Gaps = 46/233 (19%)
Query: 855 NLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRKIG 914
N++ +V G + ++G +GSGKST+ +L+ P GTV I G + L ++ G
Sbjct: 42 NISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKG----SAALIAISS--G 95
Query: 915 LVQQEPALFSTTIYENIKYG-------NEDASEIELMKATKAANAHGFISRMPEGYQSHV 967
L Q + ENI+ E EI + + + A+ FI + + Y S
Sbjct: 96 LNGQLTGI------ENIELKGLMMGLTKEKIKEI-IPEIIEFADIGKFIYQPVKTYSS-- 146
Query: 968 GDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLME----GR 1023
G K R+ A ++ NP IL++DEA S D + ++ LDK+ E G+
Sbjct: 147 ---------GMKSRLGFAISVHINPDILVIDEALSVGD---QTFTKKCLDKMNEFKEQGK 194
Query: 1024 TTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGS-------HEQLLRKENGIYKQ 1068
T ++H LS +++ K L G+V E G +++ L+K N + +
Sbjct: 195 TIFFISHSLSQVKSFCTKALWLHYGQVKEYGDIKEVVDHYDEFLKKYNQMSVE 247
|
Length = 549 |
| >gnl|CDD|213205 cd03238, ABC_UvrA, ATP-binding cassette domain of the excision repair protein UvrA | Back alignment and domain information |
|---|
Score = 48.1 bits (115), Expect = 3e-06
Identities = 24/71 (33%), Positives = 39/71 (54%), Gaps = 3/71 (4%)
Query: 974 LSGGQKQRVAIARAILKNP--SILLLDEATSALDTASENLIQEALDKLM-EGRTTIMVAH 1030
LSGG+ QRV +A + P ++ +LDE ++ L N + E + L+ G T I++ H
Sbjct: 88 LSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEH 147
Query: 1031 RLSTIRNADKI 1041
L + +AD I
Sbjct: 148 NLDVLSSADWI 158
|
Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. Length = 176 |
| >gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Score = 50.4 bits (121), Expect = 4e-06
Identities = 49/219 (22%), Positives = 98/219 (44%), Gaps = 36/219 (16%)
Query: 853 FENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRK 912
F N++L+V AG L + G G+G++ + + G ++++G +I L+ R
Sbjct: 279 FRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQ-RLA 337
Query: 913 IGLV-----QQEPALF-STTIYENIKYGNEDASEIELMKATKAANAHGFI------SRMP 960
GLV +Q L+ + N+ N GF + +
Sbjct: 338 RGLVYLPEDRQSSGLYLDAPLAWNV--------------CALTHNRRGFWIKPARENAVL 383
Query: 961 EGYQSHVG------DRGVQ-LSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQ 1013
E Y+ + ++ + LSGG +Q+V IA+ + +P +L++DE T +D ++ N I
Sbjct: 384 ERYRRALNIKFNHAEQAARTLSGGNQQKVLIAKCLEASPQLLIVDEPTRGVDVSARNDIY 443
Query: 1014 EALDKLME-GRTTIMVAHRLSTIRN-ADKIAVLQQGKVA 1050
+ + + + ++ L I AD++ V+ QG+++
Sbjct: 444 QLIRSIAAQNVAVLFISSDLEEIEQMADRVLVMHQGEIS 482
|
Length = 510 |
| >gnl|CDD|213203 cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-binding cassette domain 1 of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 49.3 bits (118), Expect = 4e-06
Identities = 23/62 (37%), Positives = 35/62 (56%), Gaps = 1/62 (1%)
Query: 343 QLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMS-NRTTIVVAHR 401
QLSGG+ QR+AIA A+ R+ DE +S LD + L R + ++ + +VV H
Sbjct: 139 QLSGGELQRVAIAAALARDADFYFFDEPSSYLDIKQRLNAARLIRELAEDDNYVLVVEHD 198
Query: 402 LS 403
L+
Sbjct: 199 LA 200
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 255 |
| >gnl|CDD|213189 cd03222, ABC_RNaseL_inhibitor, ATP-binding cassette domain of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 48.0 bits (114), Expect = 4e-06
Identities = 28/77 (36%), Positives = 45/77 (58%), Gaps = 3/77 (3%)
Query: 972 VQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLME--GRTTIMVA 1029
+ LSGG+ QRVAIA A+L+N + L DE ++ LD A+ +L E +T ++V
Sbjct: 70 IDLSGGELQRVAIAAALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVE 129
Query: 1030 HRLSTIRN-ADKIAVLQ 1045
H L+ + +D+I V +
Sbjct: 130 HDLAVLDYLSDRIHVFE 146
|
The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 177 |
| >gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Score = 49.7 bits (119), Expect = 6e-06
Identities = 38/178 (21%), Positives = 70/178 (39%), Gaps = 46/178 (25%)
Query: 223 FENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQ 282
F N++ V AG+ G G+G++ + + L G+I+L+G ++ +L R
Sbjct: 279 FRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTA-QRLA 337
Query: 283 MGLV-----SQEPALFATSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLP------- 330
GLV Q L+ ++A A N +
Sbjct: 338 RGLVYLPEDRQSSGLY--------------------LDAPLAWNVCALTHNRRGFWIKPA 377
Query: 331 ------DGYQTQVG---EGGTQ----LSGGQKQRIAIARAVLRNPKILLLDEATSALD 375
+ Y+ + Q LSGG +Q++ IA+ + +P++L++DE T +D
Sbjct: 378 RENAVLERYRRALNIKFNHAEQAARTLSGGNQQKVLIAKCLEASPQLLIVDEPTRGVD 435
|
Length = 510 |
| >gnl|CDD|213204 cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-binding cassette domain 2 of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 48.6 bits (116), Expect = 7e-06
Identities = 43/178 (24%), Positives = 72/178 (40%), Gaps = 28/178 (15%)
Query: 858 LKVSAG-----RSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRK 912
L+V G + ++G +G GK+T I ++ P G + I+ + S +
Sbjct: 15 LEVEGGSISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTV------SYKP- 67
Query: 913 IGLVQQEPALFSTTIYENIKYGNEDASEIELMKATKAANAHGFISRMPEGYQSHVGDRGV 972
Q A + T+ + + +D K T+ A + DR V
Sbjct: 68 ----QYIKADYEGTVRDLLSSITKDFYTHPYFK-TEIAKPLQIEQIL---------DREV 113
Query: 973 -QLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKL-MEGRTTIMV 1028
+LSGG+ QRVAIA + K+ I LLDE ++ LD + + + + T V
Sbjct: 114 PELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASKVIRRFAENNEKTAFV 171
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 246 |
| >gnl|CDD|184127 PRK13540, PRK13540, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 47.6 bits (113), Expect = 7e-06
Identities = 49/207 (23%), Positives = 93/207 (44%), Gaps = 24/207 (11%)
Query: 839 NVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDG 898
+ F Y +P + + ++ + AG L + G +G+GK+T++ L+ +P G +L +
Sbjct: 6 ELDFDYHDQP---LLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFER 62
Query: 899 YDIRTLNLRSLRRKIGLVQQEPALF-STTIYENIKYG---NEDASEI-ELMKATKAANAH 953
I+ +L + ++++ V + T+ EN Y + A I EL + +
Sbjct: 63 QSIKK-DLCTYQKQLCFVGHRSGINPYLTLRENCLYDIHFSPGAVGITELCRLFSLEHLI 121
Query: 954 GFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTAS-ENLI 1012
+ P G LS GQK++VA+ R + + LLDE ALD S +I
Sbjct: 122 DY----PCGL----------LSSGQKRQVALLRLWMSKAKLWLLDEPLVALDELSLLTII 167
Query: 1013 QEALDKLMEGRTTIMVAHRLSTIRNAD 1039
+ + +G ++ +H+ + AD
Sbjct: 168 TKIQEHRAKGGAVLLTSHQDLPLNKAD 194
|
Length = 200 |
| >gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Score = 49.5 bits (119), Expect = 8e-06
Identities = 26/100 (26%), Positives = 48/100 (48%), Gaps = 8/100 (8%)
Query: 169 AKGKAAAANIISIIKENSHSSERPGDDGITLP---KLAGQ-IEFSEVCFAYPSRPHMVFE 224
AK KA A ++ + +R I +P +L + IE + + + ++ +
Sbjct: 284 AKSKARLARYEELLSQEF--QKRNETAEIYIPPGPRLGDKVIEAENLSKGFGDK--LLID 339
Query: 225 NLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKI 264
+L+F + G +GP+G+GKST+ M+ +P SG I
Sbjct: 340 DLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTI 379
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. Length = 552 |
| >gnl|CDD|236861 PRK11147, PRK11147, ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Score = 49.6 bits (119), Expect = 8e-06
Identities = 42/110 (38%), Positives = 65/110 (59%), Gaps = 12/110 (10%)
Query: 974 LSGGQKQRVAIARAILKNPSILLLDEATSALD-TASENLIQEALDKLMEGRTTIMVAHRL 1032
LSGG ++ A+ RA++ NP +LLLDE T+ LD E L E K +G + I ++H
Sbjct: 157 LSGGWLRKAALGRALVSNPDVLLLDEPTNHLDIETIEWL--EGFLKTFQG-SIIFISHDR 213
Query: 1033 STIRN-ADKIAVLQQGKVAEI-GSHEQ-LLRKENGIYKQLIRLQQDKNPE 1079
S IRN A +I L +GK+ G+++Q LL KE + +R+++ +N E
Sbjct: 214 SFIRNMATRIVDLDRGKLVSYPGNYDQYLLEKE-----EALRVEELQNAE 258
|
Length = 635 |
| >gnl|CDD|223256 COG0178, UvrA, Excinuclease ATPase subunit [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Score = 49.5 bits (119), Expect = 8e-06
Identities = 26/72 (36%), Positives = 41/72 (56%), Gaps = 4/72 (5%)
Query: 974 LSGGQKQRVAIARAILK---NPSILLLDEATSALDTASENLIQEALDKLME-GRTTIMVA 1029
LSGG+ QRV +A+ + K ++ +LDE T+ L + E L +L++ G T I++
Sbjct: 823 LSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFDDIKKLLEVLHRLVDKGNTVIVIE 882
Query: 1030 HRLSTIRNADKI 1041
H L I+ AD I
Sbjct: 883 HNLDVIKTADWI 894
|
Length = 935 |
| >gnl|CDD|236755 PRK10762, PRK10762, D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Score = 49.2 bits (118), Expect = 9e-06
Identities = 29/93 (31%), Positives = 56/93 (60%), Gaps = 7/93 (7%)
Query: 974 LSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKL-MEGRTTIMVAHRL 1032
LSGG +Q+VAIAR ++ P +L+LDE T +D ++ I + +++ EG + I+V+ +
Sbjct: 396 LSGGNQQKVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKAEGLSIILVSSEM 455
Query: 1033 STIRN-ADKIAVLQQGKV-----AEIGSHEQLL 1059
+ +D+I V+ +G++ E + E+L+
Sbjct: 456 PEVLGMSDRILVMHEGRISGEFTREQATQEKLM 488
|
Length = 501 |
| >gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 48.8 bits (117), Expect = 1e-05
Identities = 54/227 (23%), Positives = 105/227 (46%), Gaps = 37/227 (16%)
Query: 854 ENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRKI 913
E ++ V AG + + G G+G+S ++ L+ +G V +DG + +++RS R I
Sbjct: 270 EPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDG---KPIDIRSPRDAI 326
Query: 914 --GLV------QQEPALFSTTIYENI---------KYGNEDASEIELMKATKAANAHGFI 956
G++ + E + ++ +NI + G + +A NA FI
Sbjct: 327 RAGIMLCPEDRKAEGIIPVHSVADNINISARRHHLRAGCL------INNRWEAENADRFI 380
Query: 957 SRM----PEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLI 1012
+ P Q + LSGG +Q+ + R + ++ ++LLDE T +D +++ I
Sbjct: 381 RSLNIKTPSREQLIM-----NLSGGNQQKAILGRWLSEDMKVILLDEPTRGIDVGAKHEI 435
Query: 1013 QEALDKLME-GRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGSHEQ 1057
+ +L G + V+ L + AD+I V+++G++A + EQ
Sbjct: 436 YNVIYELAAQGVAVLFVSSDLPEVLGVADRIVVMREGRIAGELAREQ 482
|
Length = 501 |
| >gnl|CDD|236992 PRK11819, PRK11819, putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 48.6 bits (117), Expect = 1e-05
Identities = 51/195 (26%), Positives = 92/195 (47%), Gaps = 42/195 (21%)
Query: 835 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTV 894
IE N+S + D + ++L+ + G + ++G +G+GKST+ ++ P SGT+
Sbjct: 325 IEAENLSKSFG---DRLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTI 381
Query: 895 LIDGYDIRTLNLRSLRRKIGLVQQ-----EPALFSTTIYENIKYGNEDASEIELMKATKA 949
I G + K+ V Q +P + T++E I G + I++
Sbjct: 382 KI-GETV----------KLAYVDQSRDALDP---NKTVWEEISGGLD---IIKVGNRE-- 422
Query: 950 ANAHGFISRMPEGY-----QSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSAL 1004
+ ++ R + Q VG LSGG++ R+ +A+ + + ++LLLDE T+ L
Sbjct: 423 IPSRAYVGRF--NFKGGDQQKKVG----VLSGGERNRLHLAKTLKQGGNVLLLDEPTNDL 476
Query: 1005 DTASENL--IQEALD 1017
D E L ++EAL
Sbjct: 477 DV--ETLRALEEALL 489
|
Length = 556 |
| >gnl|CDD|184131 PRK13546, PRK13546, teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 47.9 bits (114), Expect = 1e-05
Identities = 60/230 (26%), Positives = 102/230 (44%), Gaps = 44/230 (19%)
Query: 224 ENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQM 283
++++ G VG +GSGKST+ +++ PT GK+ +G ++ +
Sbjct: 41 DDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDRNG------EVSVIAISA 94
Query: 284 GLVSQEPALFATSIAN----NILLG---KE-DASMDRVIEAAKAANAHSFVEGLPDGYQT 335
GL Q T I N + +G KE A ++IE ++ F+ YQ
Sbjct: 95 GLSGQ-----LTGIENIEFKMLCMGFKRKEIKAMTPKIIEFSELGE---FI------YQP 140
Query: 336 QVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIM----S 391
+ S G + ++ + + NP IL++DEA S D + Q+ L+KI
Sbjct: 141 V-----KKYSSGMRAKLGFSINITVNPDILVIDEALSVGD---QTFAQKCLDKIYEFKEQ 192
Query: 392 NRTTIVVAHRLSTVRDVDT-IMVLKNGQVVESGTHVDLISKGGEYAALVN 440
N+T V+H L VR T I ++ G++ + G D++ K Y A +N
Sbjct: 193 NKTIFFVSHNLGQVRQFCTKIAWIEGGKLKDYGELDDVLPK---YEAFLN 239
|
Length = 264 |
| >gnl|CDD|213238 cd03271, ABC_UvrA_II, ATP-binding cassette domain II of the excision repair protein UvrA | Back alignment and domain information |
|---|
Score = 48.0 bits (115), Expect = 1e-05
Identities = 24/72 (33%), Positives = 41/72 (56%), Gaps = 4/72 (5%)
Query: 974 LSGGQKQRVAIARAILK---NPSILLLDEATSALDTASENLIQEALDKLME-GRTTIMVA 1029
LSGG+ QR+ +A+ + K ++ +LDE T+ L + E L +L++ G T +++
Sbjct: 170 LSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVDKGNTVVVIE 229
Query: 1030 HRLSTIRNADKI 1041
H L I+ AD I
Sbjct: 230 HNLDVIKCADWI 241
|
Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases. Length = 261 |
| >gnl|CDD|237894 PRK15064, PRK15064, ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 49.1 bits (118), Expect = 1e-05
Identities = 22/60 (36%), Positives = 40/60 (66%), Gaps = 3/60 (5%)
Query: 835 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTV 894
+E+ N++ + P +F+NLNL + AG LA++G++G GK+T++ ++ +P SGTV
Sbjct: 320 LEVENLTKGFDNGP---LFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTV 376
|
Length = 530 |
| >gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Score = 48.1 bits (115), Expect = 2e-05
Identities = 26/81 (32%), Positives = 46/81 (56%), Gaps = 4/81 (4%)
Query: 969 DRGVQ-LSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLMEGR--TT 1025
+R V LSGG+ QRVAIA A+ + + LLDE ++ LD ++ + + + +E T
Sbjct: 450 ERPVDELSGGELQRVAIAAALSREADLYLLDEPSAYLDVEQRIIVAKVIRRFIENNEKTA 509
Query: 1026 IMVAHRLSTIRN-ADKIAVLQ 1045
++V H + I +D++ V +
Sbjct: 510 LVVDHDIYMIDYVSDRLIVFE 530
|
Length = 591 |
| >gnl|CDD|236729 PRK10636, PRK10636, putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 48.2 bits (115), Expect = 2e-05
Identities = 53/205 (25%), Positives = 93/205 (45%), Gaps = 31/205 (15%)
Query: 221 MVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKI-LLDGHDLKSL---QL 276
++ +++ ++ G +G +G+GKST+I ++ P SG+I L G L QL
Sbjct: 326 IILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKGIKLGYFAQHQL 385
Query: 277 KWLREQMGLVSQEPALFATSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQ-T 335
++LR + E L + R+ ++ G G+Q
Sbjct: 386 EFLR------ADESPL---------------QHLARLAPQELEQKLRDYLGGF--GFQGD 422
Query: 336 QVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNRTT 395
+V E + SGG+K R+ +A V + P +LLLDE T+ LD + + AL I
Sbjct: 423 KVTEETRRFSGGEKARLVLALIVWQRPNLLLLDEPTNHLDLDMRQALTEAL--IDFEGAL 480
Query: 396 IVVAHRLSTVRD-VDTIMVLKNGQV 419
+VV+H +R D + ++ +G+V
Sbjct: 481 VVVSHDRHLLRSTTDDLYLVHDGKV 505
|
Length = 638 |
| >gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Score = 48.5 bits (115), Expect = 3e-05
Identities = 51/245 (20%), Positives = 103/245 (42%), Gaps = 35/245 (14%)
Query: 206 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKIL 265
+ +E+ Y + L V G+ F +G +G+GK+T M+ TSG
Sbjct: 1938 LRLNELTKVYSGTSSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDAT 1997
Query: 266 LDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNILLGKEDASMDRVIEAAKAANAHSF 325
+ G + + + + + MG Q A+ +++L G+E + ++
Sbjct: 1998 VAGKSILT-NISDVHQNMGYCPQFDAI------DDLLTGREHLYL------------YAR 2038
Query: 326 VEGLPDGYQTQVGEGGTQ--------------LSGGQKQRIAIARAVLRNPKILLLDEAT 371
+ G+P +V Q SGG K++++ A A++ P ++LLDE T
Sbjct: 2039 LRGVPAEEIEKVANWSIQSLGLSLYADRLAGTYSGGNKRKLSTAIALIGCPPLVLLDEPT 2098
Query: 372 SALDAESELIVQRALEKIM-SNRTTIVVAHRLSTVRDVDT-IMVLKNGQVVESGTHVDLI 429
+ +D ++ ++ + I+ R ++ +H + + T + ++ G GT L
Sbjct: 2099 TGMDPQARRMLWNTIVSIIREGRAVVLTSHSMEECEALCTRLAIMVKGAFQCLGTIQHLK 2158
Query: 430 SKGGE 434
SK G+
Sbjct: 2159 SKFGD 2163
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272 |
| >gnl|CDD|182852 PRK10938, PRK10938, putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Score = 47.3 bits (113), Expect = 3e-05
Identities = 56/242 (23%), Positives = 98/242 (40%), Gaps = 44/242 (18%)
Query: 227 NFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGK-ILLDGHDLKSLQ---------- 275
+ +++AG ++AFVG +GSGKS ++ + L +G+ LL G
Sbjct: 23 SLTLNAGDSWAFVGANGSGKS---ALARAL----AGELPLLSGERQSQFSHITRLSFEQL 75
Query: 276 -----LKWLREQMGLVSQEPALFATSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLP 330
+W R ++S + A I +D R + A+ F
Sbjct: 76 QKLVSDEWQRNNTDMLSPGEDDTGRTTAEIIQDEVKDP--ARCEQLAQ-----QF----- 123
Query: 331 DGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIM 390
G + LS G+ ++ + +A++ P +L+LDE LD S + L +
Sbjct: 124 -GITALLDRRFKYLSTGETRKTLLCQALMSEPDLLILDEPFDGLDVASRQQLAELLASLH 182
Query: 391 SNRTTIV-VAHRLSTVRD-VDTIMVLKNGQVVESGTHVDLISKGGEYAALV-NLQSSEHL 447
+ T+V V +R + D V VL + + E+G +++ + ALV L SE L
Sbjct: 183 QSGITLVLVLNRFDEIPDFVQFAGVLADCTLAETGEREEILQQ-----ALVAQLAHSEQL 237
Query: 448 SN 449
Sbjct: 238 EG 239
|
Length = 490 |
| >gnl|CDD|237894 PRK15064, PRK15064, ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 47.6 bits (114), Expect = 3e-05
Identities = 59/213 (27%), Positives = 98/213 (46%), Gaps = 54/213 (25%)
Query: 223 FENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQ 282
FEN++ G + +G +G GKST + ++ EP++G + LD + E+
Sbjct: 17 FENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPSAGNVSLDPN-----------ER 65
Query: 283 MGLVSQEPALFA---TSIANNILLGKED-----ASMDRVI---EAA-----KAANAHS-F 325
+G + Q+ FA ++ + +++G + DR+ E + K A+ F
Sbjct: 66 LGKLRQDQ--FAFEEFTVLDTVIMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKF 123
Query: 326 VEGLPDGYQTQ---------VGEGGTQLSG-------GQKQRIAIARAVLRNPKILLLDE 369
E DGY + VG Q G G K R+ +A+A+ NP ILLLDE
Sbjct: 124 AE--MDGYTAEARAGELLLGVGIPEEQHYGLMSEVAPGWKLRVLLAQALFSNPDILLLDE 181
Query: 370 ATSALDAESELIVQRALEKIMSNR--TTIVVAH 400
T+ LD + I R LE +++ R T I+++H
Sbjct: 182 PTNNLDINT--I--RWLEDVLNERNSTMIIISH 210
|
Length = 530 |
| >gnl|CDD|236729 PRK10636, PRK10636, putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 47.5 bits (113), Expect = 4e-05
Identities = 48/196 (24%), Positives = 92/196 (46%), Gaps = 28/196 (14%)
Query: 224 ENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQM 283
+N +++ G+ VG +G GKST++++++ G G + QL W+ ++
Sbjct: 18 DNATATINPGQKVGLVGKNGCGKSTLLALLKNEISADGGSYTFPG----NWQLAWVNQET 73
Query: 284 GLVSQEPAL--------------FATSIANNILLGKEDASMDRVIEAAKA----ANAHSF 325
+ Q PAL AN G A++ ++A A + A S
Sbjct: 74 PALPQ-PALEYVIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASL 132
Query: 326 VEGLPDGY-QTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQR 384
+ GL G+ Q+ + SGG + R+ +A+A++ +LLLDE T+ LD ++ + +++
Sbjct: 133 LHGL--GFSNEQLERPVSDFSGGWRMRLNLAQALICRSDLLLLDEPTNHLDLDAVIWLEK 190
Query: 385 ALEKIMSNRTTIVVAH 400
L+ T I+++H
Sbjct: 191 WLKSY--QGTLILISH 204
|
Length = 638 |
| >gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Score = 47.4 bits (113), Expect = 4e-05
Identities = 57/213 (26%), Positives = 99/213 (46%), Gaps = 31/213 (14%)
Query: 230 VDAGKTFAFVGPSGSGKSTIIS-MVQRLYEP--TSGKILLDGHDLKSLQLKWLREQMGLV 286
V G A +G SG+GK+T+++ + +R+ T G L++G L S + +G V
Sbjct: 786 VKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDSS----FQRSIGYV 841
Query: 287 SQEPALFATSIANNIL-----------LGKEDASMDRVIEAAKAANAHSFVEGLPDGYQT 335
Q+ TS L + K + M+ V E K S+ + +
Sbjct: 842 QQQDLHLPTSTVRESLRFSAYLRQPKSVSKSE-KMEYVEEVIKLLEMESYADAV------ 894
Query: 336 QVGEGGTQLSGGQKQRIAIARAVLRNPKILL-LDEATSALDAESELIVQRALEKIMSNRT 394
VG G L+ Q++R+ I ++ PK+LL LDE TS LD+++ + + + K+ +
Sbjct: 895 -VGVPGEGLNVEQRKRLTIGVELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLADHGQ 953
Query: 395 TIVVA-HRLSTV--RDVDTIMVL-KNGQVVESG 423
I+ H+ S + + D +++L K GQ V G
Sbjct: 954 AILCTIHQPSAILFEEFDRLLLLQKGGQTVYFG 986
|
[Transport and binding proteins, Other]. Length = 1394 |
| >gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Score = 47.1 bits (113), Expect = 5e-05
Identities = 50/208 (24%), Positives = 86/208 (41%), Gaps = 54/208 (25%)
Query: 848 PDITI-FENLNLKVSAG---RS--LAVVGQSGSGKSTVISLVMRFYDPISGTVLID---- 897
PD+T + +L+V G + +VG +G GK+T L+ P G V +
Sbjct: 344 PDLTKKLGDFSLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPELKIS 403
Query: 898 --------GYDIRTLNLRSLRRKIGLVQQEPALFSTTIYENIKYGNEDASEIELMKATKA 949
YD + L R I ++ Y++ E++K +
Sbjct: 404 YKPQYIKPDYDGT---VEDLLRSI------TDDLGSSYYKS-----------EIIKPLQ- 442
Query: 950 ANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASE 1009
+ R+ +V D LSGG+ QRVAIA + ++ + LLDE ++ LD
Sbjct: 443 ------LERL---LDKNVKD----LSGGELQRVAIAACLSRDADLYLLDEPSAHLDVEQR 489
Query: 1010 NLIQEALDKLMEGR--TTIMVAHRLSTI 1035
+ +A+ ++ E R T ++V H + I
Sbjct: 490 LAVAKAIRRIAEEREATALVVDHDIYMI 517
|
Length = 590 |
| >gnl|CDD|233062 TIGR00630, uvra, excinuclease ABC, A subunit | Back alignment and domain information |
|---|
Score = 46.9 bits (112), Expect = 5e-05
Identities = 29/95 (30%), Positives = 49/95 (51%), Gaps = 10/95 (10%)
Query: 974 LSGGQKQRVAIARAILK---NPSILLLDEATSALDTASENLIQEALDKLME-GRTTIMVA 1029
LSGG+ QR+ +A+ + K ++ +LDE T+ L + E L +L++ G T +++
Sbjct: 830 LSGGEAQRIKLAKELSKRSTGRTLYILDEPTTGLHFDDIKKLLEVLQRLVDKGNTVVVIE 889
Query: 1030 HRLSTIRNADKIAVL------QQGKVAEIGSHEQL 1058
H L I+ AD I L G V G+ E++
Sbjct: 890 HNLDVIKTADYIIDLGPEGGDGGGTVVASGTPEEV 924
|
This family is a member of the ABC transporter superfamily of proteins of which all members for which functions are known except the UvrA proteins are involved in the transport of material through membranes. UvrA orthologs are involved in the recognition of DNA damage as a step in nucleotide excision repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University) [DNA metabolism, DNA replication, recombination, and repair]. Length = 925 |
| >gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Score = 47.0 bits (112), Expect = 6e-05
Identities = 56/227 (24%), Positives = 92/227 (40%), Gaps = 42/227 (18%)
Query: 851 TIFENLNLKVSAGRSLAVVGQSGSGKST----VISLVMRFYDPISGTVLIDGY---DIRT 903
I + ++ + G V+G+ GSG ST + S F+ + G + DG +I+
Sbjct: 75 DILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIK- 133
Query: 904 LNLRSLRRKIGLV----QQEPALFSTTIYENIKY-------GNEDASEIELMKATKAANA 952
+ G V + + T+ E + + N A A+
Sbjct: 134 ------KHYRGDVVYNAETDVHFPHLTVGETLDFAARCKTPQNRPDGVSREEYAKHIADV 187
Query: 953 HGFISRMPEGYQSHVGD---RGVQLSGGQKQRVAIARAILKNPSILLLDEATSALD--TA 1007
+ + + VG+ RGV SGG+++RV+IA A L I D AT LD TA
Sbjct: 188 YMATYGLSHTRNTKVGNDFVRGV--SGGERKRVSIAEASLGGAKIQCWDNATRGLDSATA 245
Query: 1008 SE--NLIQEALDKLMEGRTTIMVAHRLSTIRNA----DKIAVLQQGK 1048
E ++ + + L TT +VA ++A DK+ VL +G
Sbjct: 246 LEFIRALKTSANIL---DTTPLVA-IYQCSQDAYELFDKVIVLYEGY 288
|
[Transport and binding proteins, Other]. Length = 1394 |
| >gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Score = 46.5 bits (110), Expect = 9e-05
Identities = 48/233 (20%), Positives = 104/233 (44%), Gaps = 21/233 (9%)
Query: 854 ENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRKI 913
+ L + V G ++G +G+GK+T ++ SG + G I T N+ + + +
Sbjct: 1956 DRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILT-NISDVHQNM 2014
Query: 914 GLVQQEPALFSTT-----IYENIKYGNEDASEIELMK--ATKAANAHGFISRMPEGYQSH 966
G Q A+ +Y + A EIE + + ++ + R+ Y
Sbjct: 2015 GYCPQFDAIDDLLTGREHLYLYARLRGVPAEEIEKVANWSIQSLGLSLYADRLAGTY--- 2071
Query: 967 VGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLM-EGRTT 1025
SGG K++++ A A++ P ++LLDE T+ +D + ++ + ++ EGR
Sbjct: 2072 --------SGGNKRKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRAV 2123
Query: 1026 IMVAHRLSTIRN-ADKIAVLQQGKVAEIGSHEQLLRKENGIYKQLIRLQQDKN 1077
++ +H + ++A++ +G +G+ + L K Y ++++ K+
Sbjct: 2124 VLTSHSMEECEALCTRLAIMVKGAFQCLGTIQHLKSKFGDGYIVTMKIKSPKD 2176
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272 |
| >gnl|CDD|236861 PRK11147, PRK11147, ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Score = 45.7 bits (109), Expect = 1e-04
Identities = 18/37 (48%), Positives = 27/37 (72%)
Query: 342 TQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAES 378
+ LSGG ++ A+ RA++ NP +LLLDE T+ LD E+
Sbjct: 155 SSLSGGWLRKAALGRALVSNPDVLLLDEPTNHLDIET 191
|
Length = 635 |
| >gnl|CDD|215558 PLN03073, PLN03073, ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Score = 45.2 bits (107), Expect = 2e-04
Identities = 55/206 (26%), Positives = 86/206 (41%), Gaps = 41/206 (19%)
Query: 860 VSAGRSLAVVGQSGSGKSTVIS-LVMRFYDPISGTVLI-------DGYDIRTLN------ 905
++ GR +VG++G+GK+T + + M D I I G D L
Sbjct: 200 LAFGRHYGLVGRNGTGKTTFLRYMAMHAIDGIPKNCQILHVEQEVVGDDTTALQCVLNTD 259
Query: 906 ---LRSLRRKIGLVQQEPALFSTTIYENIKYGNEDASE--------------IELMKA-- 946
+ L + LV Q+ L T K N+D + +EL+ A
Sbjct: 260 IERTQLLEEEAQLVAQQRELEFETETGKGKGANKDGVDKDAVSQRLEEIYKRLELIDAYT 319
Query: 947 --TKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSAL 1004
+AA+ +S PE SGG + R+A+ARA+ P +LLLDE T+ L
Sbjct: 320 AEARAASILAGLSFTPEMQVK----ATKTFSGGWRMRIALARALFIEPDLLLLDEPTNHL 375
Query: 1005 DTASENLIQEALDKLMEGRTTIMVAH 1030
D + ++ L K +T I+V+H
Sbjct: 376 DLHAVLWLETYLLKW--PKTFIVVSH 399
|
Length = 718 |
| >gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Score = 45.5 bits (108), Expect = 2e-04
Identities = 32/101 (31%), Positives = 51/101 (50%), Gaps = 5/101 (4%)
Query: 328 GLPDGYQTQVGEGGTQ-LSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRAL 386
GL T+VG + +SGG+++R++IA A L KI D AT LD+ + L RAL
Sbjct: 193 GLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKIQCWDNATRGLDSATALEFIRAL 252
Query: 387 EKI--MSNRTTIVVAHRLS--TVRDVDTIMVLKNGQVVESG 423
+ + + T +V ++ S D ++VL G + G
Sbjct: 253 KTSANILDTTPLVAIYQCSQDAYELFDKVIVLYEGYQIYFG 293
|
[Transport and binding proteins, Other]. Length = 1394 |
| >gnl|CDD|213238 cd03271, ABC_UvrA_II, ATP-binding cassette domain II of the excision repair protein UvrA | Back alignment and domain information |
|---|
Score = 43.8 bits (104), Expect = 2e-04
Identities = 41/129 (31%), Positives = 61/129 (47%), Gaps = 30/129 (23%)
Query: 322 AHSFVEGLPD-------------GYQTQVGEGGTQLSGGQKQRIAIARAVLR---NPKIL 365
A F E +P GY ++G+ T LSGG+ QRI +A+ + + +
Sbjct: 136 ALEFFENIPKIARKLQTLCDVGLGY-IKLGQPATTLSGGEAQRIKLAKELSKRSTGKTLY 194
Query: 366 LLDEATSAL---DAESELIV-QRALEKIMSNRTTIVVAHRLSTVRDVDTIMVL------K 415
+LDE T+ L D + L V QR ++K T +V+ H L ++ D I+ L
Sbjct: 195 ILDEPTTGLHFHDVKKLLEVLQRLVDK---GNTVVVIEHNLDVIKCADWIIDLGPEGGDG 251
Query: 416 NGQVVESGT 424
GQVV SGT
Sbjct: 252 GGQVVASGT 260
|
Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases. Length = 261 |
| >gnl|CDD|237894 PRK15064, PRK15064, ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 44.9 bits (107), Expect = 2e-04
Identities = 51/191 (26%), Positives = 85/191 (44%), Gaps = 58/191 (30%)
Query: 853 FENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRK 912
FEN+++K G ++G +G GKST + ++ +P +G V +D N R
Sbjct: 17 FENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPSAGNVSLD------PNER----- 65
Query: 913 IGLVQQEPALFSTTIYEN----------------IK------YGNEDASEIELMKATKAA 950
+G ++Q+ F+ +E +K Y + SE + MK A
Sbjct: 66 LGKLRQDQ--FA---FEEFTVLDTVIMGHTELWEVKQERDRIYALPEMSEEDGMKV---A 117
Query: 951 NAHGFISRMPEGY--QSHVGD--RGV------------QLSGGQKQRVAIARAILKNPSI 994
+ + M +GY ++ G+ GV +++ G K RV +A+A+ NP I
Sbjct: 118 DLEVKFAEM-DGYTAEARAGELLLGVGIPEEQHYGLMSEVAPGWKLRVLLAQALFSNPDI 176
Query: 995 LLLDEATSALD 1005
LLLDE T+ LD
Sbjct: 177 LLLDEPTNNLD 187
|
Length = 530 |
| >gnl|CDD|236755 PRK10762, PRK10762, D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.8 bits (104), Expect = 4e-04
Identities = 17/32 (53%), Positives = 25/32 (78%)
Query: 344 LSGGQKQRIAIARAVLRNPKILLLDEATSALD 375
LSGG +Q++AIAR ++ PK+L+LDE T +D
Sbjct: 396 LSGGNQQKVAIARGLMTRPKVLILDEPTRGVD 427
|
Length = 501 |
| >gnl|CDD|215599 PLN03140, PLN03140, ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Score = 43.7 bits (103), Expect = 6e-04
Identities = 25/69 (36%), Positives = 40/69 (57%), Gaps = 2/69 (2%)
Query: 967 VGDRGVQ-LSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLME-GRT 1024
VG GV LS Q++R+ IA ++ NPSI+ +DE TS LD + ++ + ++ GRT
Sbjct: 1012 VGLPGVTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 1071
Query: 1025 TIMVAHRLS 1033
+ H+ S
Sbjct: 1072 VVCTIHQPS 1080
|
Length = 1470 |
| >gnl|CDD|236992 PRK11819, PRK11819, putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 43.2 bits (103), Expect = 7e-04
Identities = 21/66 (31%), Positives = 38/66 (57%), Gaps = 3/66 (4%)
Query: 200 PKLAGQ-IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYE 258
P+L + IE + ++ R ++ ++L+FS+ G +GP+G+GKST+ M+ +
Sbjct: 318 PRLGDKVIEAENLSKSFGDR--LLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQ 375
Query: 259 PTSGKI 264
P SG I
Sbjct: 376 PDSGTI 381
|
Length = 556 |
| >gnl|CDD|237894 PRK15064, PRK15064, ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.3 bits (103), Expect = 7e-04
Identities = 33/92 (35%), Positives = 53/92 (57%), Gaps = 5/92 (5%)
Query: 344 LSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLS 403
LSGG+K R+ + +++ P +L++DE T+ +D ES + ALEK T I V+H
Sbjct: 439 LSGGEKGRMLFGKLMMQKPNVLVMDEPTNHMDMESIESLNMALEKY--EGTLIFVSHDRE 496
Query: 404 TVRDVDT-IMVLKNGQVVE-SGTHVD-LISKG 432
V + T I+ + VV+ SGT+ + L S+G
Sbjct: 497 FVSSLATRIIEITPDGVVDFSGTYEEYLRSQG 528
|
Length = 530 |
| >gnl|CDD|184128 PRK13541, PRK13541, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 41.4 bits (97), Expect = 8e-04
Identities = 41/180 (22%), Positives = 79/180 (43%), Gaps = 21/180 (11%)
Query: 864 RSLAVV-GQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLN---LRSLRRKIGLVQQE 919
++ + G +G GKS+++ ++ P SG + +I + + +GL
Sbjct: 26 SAITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINNIAKPYCTYIGHNLGLK--- 82
Query: 920 PALFSTTIYENIKYGNEDASEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQK 979
T++EN+K+ +E + E + A H F + ++ LS G +
Sbjct: 83 ---LEMTVFENLKFWSEIYNSAETLYAA----IHYF------KLHDLLDEKCYSLSSGMQ 129
Query: 980 QRVAIARAILKNPSILLLDEATSALDTASENLIQEALD-KLMEGRTTIMVAHRLSTIRNA 1038
+ VAIAR I + LLDE + L + +L+ + K G ++ +H S+I++A
Sbjct: 130 KIVAIARLIACQSDLWLLDEVETNLSKENRDLLNNLIVMKANSGGIVLLSSHLESSIKSA 189
|
Length = 195 |
| >gnl|CDD|213194 cd03227, ABC_Class2, ATP-binding cassette domain of non-transporter proteins | Back alignment and domain information |
|---|
Score = 40.8 bits (96), Expect = 9e-04
Identities = 24/76 (31%), Positives = 39/76 (51%), Gaps = 5/76 (6%)
Query: 972 VQLSGGQKQRVAIARAI----LKNPSILLLDEATSALDTASENLIQEALDK-LMEGRTTI 1026
+QLSGG+K+ A+A + LK + +LDE LD + EA+ + L++G I
Sbjct: 76 LQLSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILEHLVKGAQVI 135
Query: 1027 MVAHRLSTIRNADKIA 1042
++ H ADK+
Sbjct: 136 VITHLPELAELADKLI 151
|
ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterized by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins. Length = 162 |
| >gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 42.6 bits (101), Expect = 0.001
Identities = 58/220 (26%), Positives = 100/220 (45%), Gaps = 37/220 (16%)
Query: 224 ENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLRE-- 281
E ++FSV AG+ G G+G+S ++ ++ T+G++ LDG K + ++ R+
Sbjct: 270 EPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDG---KPIDIRSPRDAI 326
Query: 282 QMGLV------SQEPALFATSIANNILLGKEDASMDR-------VIEAAK-AANAHSFVE 327
+ G++ E + S+A+NI + S R +I A NA F+
Sbjct: 327 RAGIMLCPEDRKAEGIIPVHSVADNI-----NISARRHHLRAGCLINNRWEAENADRFIR 381
Query: 328 GL----PDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALD--AESELI 381
L P Q + LSGG +Q+ + R + + K++LLDE T +D A+ E I
Sbjct: 382 SLNIKTPSREQLIM-----NLSGGNQQKAILGRWLSEDMKVILLDEPTRGIDVGAKHE-I 435
Query: 382 VQRALEKIMSNRTTIVVAHRLSTVRDV-DTIMVLKNGQVV 420
E + V+ L V V D I+V++ G++
Sbjct: 436 YNVIYELAAQGVAVLFVSSDLPEVLGVADRIVVMREGRIA 475
|
Length = 501 |
| >gnl|CDD|213205 cd03238, ABC_UvrA, ATP-binding cassette domain of the excision repair protein UvrA | Back alignment and domain information |
|---|
Score = 40.8 bits (96), Expect = 0.001
Identities = 49/208 (23%), Positives = 82/208 (39%), Gaps = 53/208 (25%)
Query: 225 NLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMG 284
NL+ S+ G SGSGKST+++ + LY SGK L + L
Sbjct: 13 NLDVSIPLNVLVVVTGVSGSGKSTLVN--EGLYA--SGKARL----ISFLPK-------- 56
Query: 285 LVSQEPALFATSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQL 344
S+ +F + I +G GY T +G+ + L
Sbjct: 57 -FSRNKLIFIDQLQFLIDVGL--------------------------GYLT-LGQKLSTL 88
Query: 345 SGGQKQRIAIARAVLRNPK--ILLLDEATSALDAESELIVQRALEKIMS-NRTTIVVAHR 401
SGG+ QR+ +A + P + +LDE ++ L + + ++ ++ T I++ H
Sbjct: 89 SGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEHN 148
Query: 402 LSTVRDVDTIMVL------KNGQVVESG 423
L + D I+ G+VV SG
Sbjct: 149 LDVLSSADWIIDFGPGSGKSGGKVVFSG 176
|
Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. Length = 176 |
| >gnl|CDD|237894 PRK15064, PRK15064, ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 42.6 bits (101), Expect = 0.001
Identities = 22/57 (38%), Positives = 37/57 (64%), Gaps = 2/57 (3%)
Query: 974 LSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLMEGRTTIMVAH 1030
LSGG+K R+ + +++ P++L++DE T+ +D S + AL+K EG T I V+H
Sbjct: 439 LSGGEKGRMLFGKLMMQKPNVLVMDEPTNHMDMESIESLNMALEKY-EG-TLIFVSH 493
|
Length = 530 |
| >gnl|CDD|184128 PRK13541, PRK13541, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 41.0 bits (96), Expect = 0.001
Identities = 34/153 (22%), Positives = 66/153 (43%), Gaps = 22/153 (14%)
Query: 240 GPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGLVSQEPALFATSIAN 299
G +G GKS+++ M+ + +P+SG I ++ ++ + T I +
Sbjct: 33 GANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINNIA---------------KPYCTYIGH 77
Query: 300 NILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQ--VGEGGTQLSGGQKQRIAIARA 357
N+ L E + + ++ N+ + ++ + E LS G ++ +AIAR
Sbjct: 78 NLGLKLEMTVFENLKFWSEIYNSAETLYAAIHYFKLHDLLDEKCYSLSSGMQKIVAIARL 137
Query: 358 VLRNPKILLLDEATSALDAESE-----LIVQRA 385
+ + LLDE + L E+ LIV +A
Sbjct: 138 IACQSDLWLLDEVETNLSKENRDLLNNLIVMKA 170
|
Length = 195 |
| >gnl|CDD|213237 cd03270, ABC_UvrA_I, ATP-binding cassette domain I of the excision repair protein UvrA | Back alignment and domain information |
|---|
Score = 41.5 bits (98), Expect = 0.001
Identities = 24/71 (33%), Positives = 38/71 (53%), Gaps = 3/71 (4%)
Query: 974 LSGGQKQRVAIARAILKNPS--ILLLDEATSALDTASENLIQEALDKLME-GRTTIMVAH 1030
LSGG+ QR+ +A I + + +LDE + L + + E L +L + G T ++V H
Sbjct: 138 LSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHPRDNDRLIETLKRLRDLGNTVLVVEH 197
Query: 1031 RLSTIRNADKI 1041
TIR AD +
Sbjct: 198 DEDTIRAADHV 208
|
Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. Length = 226 |
| >gnl|CDD|213190 cd03223, ABCD_peroxisomal_ALDP, ATP-binding cassette domain of peroxisomal transporter, subfamily D | Back alignment and domain information |
|---|
Score = 39.8 bits (94), Expect = 0.002
Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
Query: 835 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVI 880
IEL N+S P + ++L+ ++ G L + G SG+GKS++
Sbjct: 1 IELENLSLATP--DGRVLLKDLSFEIKPGDRLLITGPSGTGKSSLF 44
|
Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asymptomatic). Length = 166 |
| >gnl|CDD|236861 PRK11147, PRK11147, ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Score = 41.9 bits (99), Expect = 0.002
Identities = 23/60 (38%), Positives = 39/60 (65%), Gaps = 8/60 (13%)
Query: 344 LSGGQKQRIAIARAVLRNPKILLLDEATSALDAES-ELIVQRALEKIMSNR--TTIVVAH 400
LSGG++ R+ +AR L+ +L+LDE T+ LD E+ EL LE+++ + T ++V+H
Sbjct: 441 LSGGERNRLLLARLFLKPSNLLILDEPTNDLDVETLEL-----LEELLDSYQGTVLLVSH 495
|
Length = 635 |
| >gnl|CDD|237894 PRK15064, PRK15064, ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 41.4 bits (98), Expect = 0.002
Identities = 18/59 (30%), Positives = 34/59 (57%), Gaps = 2/59 (3%)
Query: 206 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKI 264
+E + + + P +F+NLN ++AG+ A +G +G GK+T++ + EP SG +
Sbjct: 320 LEVENLTKGFDNGP--LFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTV 376
|
Length = 530 |
| >gnl|CDD|233062 TIGR00630, uvra, excinuclease ABC, A subunit | Back alignment and domain information |
|---|
Score = 42.3 bits (100), Expect = 0.002
Identities = 35/106 (33%), Positives = 56/106 (52%), Gaps = 17/106 (16%)
Query: 332 GYQTQVGEGGTQLSGGQKQRIAIARAVLR---NPKILLLDEATSAL---DAESEL-IVQR 384
GY ++G+ T LSGG+ QRI +A+ + + + +LDE T+ L D + L ++QR
Sbjct: 819 GY-IRLGQPATTLSGGEAQRIKLAKELSKRSTGRTLYILDEPTTGLHFDDIKKLLEVLQR 877
Query: 385 ALEKIMSNRTTIVVAHRLSTVRDVDTIMVL------KNGQVVESGT 424
++K T +V+ H L ++ D I+ L G VV SGT
Sbjct: 878 LVDK---GNTVVVIEHNLDVIKTADYIIDLGPEGGDGGGTVVASGT 920
|
This family is a member of the ABC transporter superfamily of proteins of which all members for which functions are known except the UvrA proteins are involved in the transport of material through membranes. UvrA orthologs are involved in the recognition of DNA damage as a step in nucleotide excision repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University) [DNA metabolism, DNA replication, recombination, and repair]. Length = 925 |
| >gnl|CDD|213207 cd03240, ABC_Rad50, ATP-binding cassette domain of Rad50 | Back alignment and domain information |
|---|
Score = 40.3 bits (95), Expect = 0.002
Identities = 23/70 (32%), Positives = 35/70 (50%), Gaps = 15/70 (21%)
Query: 343 QLSGGQKQ------RIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIM------ 390
+ SGG+K R+A+A N IL LDE T+ LD E+ ++ +L +I+
Sbjct: 115 RCSGGEKVLASLIIRLALAETFGSNCGILALDEPTTNLDEEN---IEESLAEIIEERKSQ 171
Query: 391 SNRTTIVVAH 400
N IV+ H
Sbjct: 172 KNFQLIVITH 181
|
The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence. Length = 204 |
| >gnl|CDD|213207 cd03240, ABC_Rad50, ATP-binding cassette domain of Rad50 | Back alignment and domain information |
|---|
Score = 40.3 bits (95), Expect = 0.002
Identities = 51/209 (24%), Positives = 78/209 (37%), Gaps = 62/209 (29%)
Query: 834 NIELRNV-SFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVI-SLVMRFY---D 888
+ +RN+ SF R +I F L L +VGQ+G+GK+T+I +L
Sbjct: 3 KLSIRNIRSFH--ERSEIEFFSPLTL---------IVGQNGAGKTTIIEALKYALTGELP 51
Query: 889 PISGTVLIDGYDIR--------TLNLRSLRRKIGLVQQEPALFSTTIYENIKYGNEDASE 940
P S D IR L + K + + A+ I+ G +
Sbjct: 52 PNSKGGAHDPKLIREGEVRAQVKLAFENANGKKYTITRSLAILENVIF--CHQGESNW-- 107
Query: 941 IELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQ------RVAIARAILKNPSI 994
+ M + SGG+K R+A+A N I
Sbjct: 108 --------------PLLDMRG-----------RCSGGEKVLASLIIRLALAETFGSNCGI 142
Query: 995 LLLDEATSALDTASENLIQEALDKLMEGR 1023
L LDE T+ LD E I+E+L +++E R
Sbjct: 143 LALDEPTTNLD---EENIEESLAEIIEER 168
|
The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence. Length = 204 |
| >gnl|CDD|213190 cd03223, ABCD_peroxisomal_ALDP, ATP-binding cassette domain of peroxisomal transporter, subfamily D | Back alignment and domain information |
|---|
Score = 39.4 bits (93), Expect = 0.003
Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Query: 206 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKI 264
IE + A P ++ ++L+F + G GPSG+GKS++ + L+ SG+I
Sbjct: 1 IELENLSLATPDG-RVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRI 58
|
Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asymptomatic). Length = 166 |
| >gnl|CDD|236861 PRK11147, PRK11147, ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Score = 41.5 bits (98), Expect = 0.003
Identities = 24/57 (42%), Positives = 39/57 (68%), Gaps = 2/57 (3%)
Query: 974 LSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLMEGRTTIMVAH 1030
LSGG++ R+ +AR LK ++L+LDE T+ LD + L++E LD +G T ++V+H
Sbjct: 441 LSGGERNRLLLARLFLKPSNLLILDEPTNDLDVETLELLEELLDS-YQG-TVLLVSH 495
|
Length = 635 |
| >gnl|CDD|223256 COG0178, UvrA, Excinuclease ATPase subunit [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Score = 41.0 bits (97), Expect = 0.004
Identities = 37/104 (35%), Positives = 51/104 (49%), Gaps = 15/104 (14%)
Query: 974 LSGGQKQRVAIARAILKNPSILL--LDEATSAL---DTASENLIQEALDKLME-GRTTIM 1027
LSGG+ QR+ +A I + +L LDE + L D E LI E L +L + G T I+
Sbjct: 482 LSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDN--ERLI-ETLKRLRDLGNTVIV 538
Query: 1028 VAHRLSTIRNADKI------AVLQQGKVAEIGSHEQLLRKENGI 1065
V H TIR AD I A G++ G+ E+LL +
Sbjct: 539 VEHDEDTIRAADHIIDIGPGAGEHGGEIVAEGTPEELLANPESL 582
|
Length = 935 |
| >gnl|CDD|213194 cd03227, ABC_Class2, ATP-binding cassette domain of non-transporter proteins | Back alignment and domain information |
|---|
Score = 38.9 bits (91), Expect = 0.004
Identities = 38/183 (20%), Positives = 58/183 (31%), Gaps = 61/183 (33%)
Query: 239 VGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGLVSQEPALFATSIA 298
GP+GSGKSTI+ + +GL A S
Sbjct: 27 TGPNGSGKSTIL------------------------------DAIGLA----LGGAQSAT 52
Query: 299 NNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIA--- 355
K I AA +A QLSGG+K+ A+A
Sbjct: 53 RRRSGVKA-----GCIVAAVSAELIFTR---------------LQLSGGEKELSALALIL 92
Query: 356 --RAVLRNPKILLLDEATSALDAESELIVQRALEKIM-SNRTTIVVAHRLSTVRDVDTIM 412
++ P + +LDE LD + A+ + + IV+ H D ++
Sbjct: 93 ALASLKPRP-LYILDEIDRGLDPRDGQALAEAILEHLVKGAQVIVITHLPELAELADKLI 151
Query: 413 VLK 415
+K
Sbjct: 152 HIK 154
|
ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterized by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins. Length = 162 |
| >gnl|CDD|213245 cd03278, ABC_SMC_barmotin, ATP-binding cassette domain of barmotin, a member of the SMC protein family | Back alignment and domain information |
|---|
Score = 39.4 bits (93), Expect = 0.004
Identities = 27/80 (33%), Positives = 39/80 (48%), Gaps = 5/80 (6%)
Query: 974 LSGGQKQRVAIAR--AILK-NPS-ILLLDEATSALDTASENLIQEALDKLMEGRTTIMVA 1029
LSGG+K A+A AI + PS +LDE +ALD A+ L + + I++
Sbjct: 114 LSGGEKALTALALLFAIFRVRPSPFCVLDEVDAALDDANVERFARLLKEFSKETQFIVIT 173
Query: 1030 HRLSTIRNADK-IAVLQQGK 1048
HR T+ AD+ V Q
Sbjct: 174 HRKGTMEAADRLYGVTMQES 193
|
Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (formerly known as Rad18). Length = 197 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 1082 | |||
| KOG0055 | 1228 | consensus Multidrug/pheromone exporter, ABC superf | 100.0 | |
| KOG0054 | 1381 | consensus Multidrug resistance-associated protein/ | 100.0 | |
| PTZ00265 | 1466 | multidrug resistance protein (mdr1); Provisional | 100.0 | |
| PLN03130 | 1622 | ABC transporter C family member; Provisional | 100.0 | |
| PLN03232 | 1495 | ABC transporter C family member; Provisional | 100.0 | |
| TIGR00957 | 1522 | MRP_assoc_pro multi drug resistance-associated pro | 100.0 | |
| PTZ00243 | 1560 | ABC transporter; Provisional | 100.0 | |
| TIGR01271 | 1490 | CFTR_protein cystic fibrosis transmembrane conduct | 100.0 | |
| KOG0058 | 716 | consensus Peptide exporter, ABC superfamily [Intra | 100.0 | |
| KOG0055 | 1228 | consensus Multidrug/pheromone exporter, ABC superf | 100.0 | |
| COG2274 | 709 | SunT ABC-type bacteriocin/lantibiotic exporters, c | 100.0 | |
| COG1132 | 567 | MdlB ABC-type multidrug transport system, ATPase a | 100.0 | |
| KOG0058 | 716 | consensus Peptide exporter, ABC superfamily [Intra | 100.0 | |
| PRK11174 | 588 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| TIGR00958 | 711 | 3a01208 Conjugate Transporter-2 (CT2) Family prote | 100.0 | |
| TIGR03797 | 686 | NHPM_micro_ABC2 NHPM bacteriocin system ABC transp | 100.0 | |
| COG4988 | 559 | CydD ABC-type transport system involved in cytochr | 100.0 | |
| TIGR01193 | 708 | bacteriocin_ABC ABC-type bacteriocin transporter. | 100.0 | |
| TIGR03796 | 710 | NHPM_micro_ABC1 NHPM bacteriocin system ABC transp | 100.0 | |
| PRK11160 | 574 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| PRK10790 | 592 | putative multidrug transporter membrane\ATP-bindin | 100.0 | |
| PRK11176 | 582 | lipid transporter ATP-binding/permease protein; Pr | 100.0 | |
| TIGR03375 | 694 | type_I_sec_LssB type I secretion system ATPase, Ls | 100.0 | |
| KOG0056 | 790 | consensus Heavy metal exporter HMT1, ABC superfami | 100.0 | |
| KOG0057 | 591 | consensus Mitochondrial Fe/S cluster exporter, ABC | 100.0 | |
| TIGR01846 | 694 | type_I_sec_HlyB type I secretion system ABC transp | 100.0 | |
| COG4987 | 573 | CydC ABC-type transport system involved in cytochr | 100.0 | |
| TIGR02203 | 571 | MsbA_lipidA lipid A export permease/ATP-binding pr | 100.0 | |
| PRK13657 | 588 | cyclic beta-1,2-glucan ABC transporter; Provisiona | 100.0 | |
| TIGR02204 | 576 | MsbA_rel ABC transporter, permease/ATP-binding pro | 100.0 | |
| TIGR02868 | 529 | CydC thiol reductant ABC exporter, CydC subunit. T | 100.0 | |
| COG2274 | 709 | SunT ABC-type bacteriocin/lantibiotic exporters, c | 100.0 | |
| PTZ00265 | 1466 | multidrug resistance protein (mdr1); Provisional | 100.0 | |
| TIGR01192 | 585 | chvA glucan exporter ATP-binding protein. This mod | 100.0 | |
| PRK10789 | 569 | putative multidrug transporter membrane\ATP-bindin | 100.0 | |
| COG5265 | 497 | ATM1 ABC-type transport system involved in Fe-S cl | 100.0 | |
| TIGR02857 | 529 | CydD thiol reductant ABC exporter, CydD subunit. U | 100.0 | |
| COG1123 | 539 | ATPase components of various ABC-type transport sy | 100.0 | |
| TIGR01842 | 544 | type_I_sec_PrtD type I secretion system ABC transp | 100.0 | |
| COG4988 | 559 | CydD ABC-type transport system involved in cytochr | 100.0 | |
| PRK11174 | 588 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| PRK10261 | 623 | glutathione transporter ATP-binding protein; Provi | 100.0 | |
| PRK13549 | 506 | xylose transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK15134 | 529 | microcin C ABC transporter ATP-binding protein Yej | 100.0 | |
| COG1132 | 567 | MdlB ABC-type multidrug transport system, ATPase a | 100.0 | |
| TIGR03797 | 686 | NHPM_micro_ABC2 NHPM bacteriocin system ABC transp | 100.0 | |
| PRK09700 | 510 | D-allose transporter ATP-binding protein; Provisio | 100.0 | |
| TIGR03796 | 710 | NHPM_micro_ABC1 NHPM bacteriocin system ABC transp | 100.0 | |
| TIGR00958 | 711 | 3a01208 Conjugate Transporter-2 (CT2) Family prote | 100.0 | |
| TIGR01194 | 555 | cyc_pep_trnsptr cyclic peptide transporter. This m | 100.0 | |
| TIGR03269 | 520 | met_CoM_red_A2 methyl coenzyme M reductase system, | 100.0 | |
| PRK10762 | 501 | D-ribose transporter ATP binding protein; Provisio | 100.0 | |
| PRK11176 | 582 | lipid transporter ATP-binding/permease protein; Pr | 100.0 | |
| PRK11288 | 501 | araG L-arabinose transporter ATP-binding protein; | 100.0 | |
| TIGR01193 | 708 | bacteriocin_ABC ABC-type bacteriocin transporter. | 100.0 | |
| COG4172 | 534 | ABC-type uncharacterized transport system, duplica | 100.0 | |
| PRK15439 | 510 | autoinducer 2 ABC transporter ATP-binding protein | 100.0 | |
| COG4618 | 580 | ArpD ABC-type protease/lipase transport system, AT | 100.0 | |
| TIGR03375 | 694 | type_I_sec_LssB type I secretion system ATPase, Ls | 100.0 | |
| TIGR02633 | 500 | xylG D-xylose ABC transporter, ATP-binding protein | 100.0 | |
| KOG0056 | 790 | consensus Heavy metal exporter HMT1, ABC superfami | 100.0 | |
| PRK11160 | 574 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| PRK10982 | 491 | galactose/methyl galaxtoside transporter ATP-bindi | 100.0 | |
| TIGR01257 | 2272 | rim_protein retinal-specific rim ABC transporter. | 100.0 | |
| PRK10938 | 490 | putative molybdenum transport ATP-binding protein | 100.0 | |
| TIGR01846 | 694 | type_I_sec_HlyB type I secretion system ABC transp | 100.0 | |
| TIGR02203 | 571 | MsbA_lipidA lipid A export permease/ATP-binding pr | 100.0 | |
| KOG0057 | 591 | consensus Mitochondrial Fe/S cluster exporter, ABC | 100.0 | |
| PRK10790 | 592 | putative multidrug transporter membrane\ATP-bindin | 100.0 | |
| PRK15064 | 530 | ABC transporter ATP-binding protein; Provisional | 100.0 | |
| PRK10789 | 569 | putative multidrug transporter membrane\ATP-bindin | 100.0 | |
| PRK13657 | 588 | cyclic beta-1,2-glucan ABC transporter; Provisiona | 100.0 | |
| TIGR00956 | 1394 | 3a01205 Pleiotropic Drug Resistance (PDR) Family p | 100.0 | |
| COG4987 | 573 | CydC ABC-type transport system involved in cytochr | 100.0 | |
| TIGR02204 | 576 | MsbA_rel ABC transporter, permease/ATP-binding pro | 100.0 | |
| TIGR02868 | 529 | CydC thiol reductant ABC exporter, CydC subunit. T | 100.0 | |
| TIGR01192 | 585 | chvA glucan exporter ATP-binding protein. This mod | 100.0 | |
| COG5265 | 497 | ATM1 ABC-type transport system involved in Fe-S cl | 100.0 | |
| PRK11819 | 556 | putative ABC transporter ATP-binding protein; Revi | 100.0 | |
| PLN03232 | 1495 | ABC transporter C family member; Provisional | 100.0 | |
| TIGR01842 | 544 | type_I_sec_PrtD type I secretion system ABC transp | 100.0 | |
| TIGR03719 | 552 | ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa | 100.0 | |
| PLN03130 | 1622 | ABC transporter C family member; Provisional | 100.0 | |
| COG4618 | 580 | ArpD ABC-type protease/lipase transport system, AT | 100.0 | |
| PRK10522 | 547 | multidrug transporter membrane component/ATP-bindi | 100.0 | |
| TIGR02857 | 529 | CydD thiol reductant ABC exporter, CydD subunit. U | 100.0 | |
| PRK10636 | 638 | putative ABC transporter ATP-binding protein; Prov | 100.0 | |
| TIGR00957 | 1522 | MRP_assoc_pro multi drug resistance-associated pro | 100.0 | |
| PLN03140 | 1470 | ABC transporter G family member; Provisional | 100.0 | |
| PRK11147 | 635 | ABC transporter ATPase component; Reviewed | 100.0 | |
| PTZ00243 | 1560 | ABC transporter; Provisional | 100.0 | |
| PLN03073 | 718 | ABC transporter F family; Provisional | 100.0 | |
| COG1129 | 500 | MglA ABC-type sugar transport system, ATPase compo | 100.0 | |
| TIGR00954 | 659 | 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FA | 100.0 | |
| PRK13409 | 590 | putative ATPase RIL; Provisional | 100.0 | |
| COG0488 | 530 | Uup ATPase components of ABC transporters with dup | 100.0 | |
| COG3845 | 501 | ABC-type uncharacterized transport systems, ATPase | 100.0 | |
| TIGR01271 | 1490 | CFTR_protein cystic fibrosis transmembrane conduct | 100.0 | |
| TIGR01194 | 555 | cyc_pep_trnsptr cyclic peptide transporter. This m | 100.0 | |
| KOG0054 | 1381 | consensus Multidrug resistance-associated protein/ | 100.0 | |
| PRK10522 | 547 | multidrug transporter membrane component/ATP-bindi | 100.0 | |
| TIGR00954 | 659 | 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FA | 100.0 | |
| cd03289 | 275 | ABCC_CFTR2 The CFTR subfamily domain 2. The cystic | 100.0 | |
| COG1126 | 240 | GlnQ ABC-type polar amino acid transport system, A | 100.0 | |
| COG1126 | 240 | GlnQ ABC-type polar amino acid transport system, A | 100.0 | |
| PRK14257 | 329 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| KOG0927 | 614 | consensus Predicted transporter (ABC superfamily) | 100.0 | |
| COG1135 | 339 | AbcC ABC-type metal ion transport system, ATPase c | 100.0 | |
| cd03289 | 275 | ABCC_CFTR2 The CFTR subfamily domain 2. The cystic | 100.0 | |
| COG1125 | 309 | OpuBA ABC-type proline/glycine betaine transport s | 100.0 | |
| COG1117 | 253 | PstB ABC-type phosphate transport system, ATPase c | 100.0 | |
| COG1125 | 309 | OpuBA ABC-type proline/glycine betaine transport s | 100.0 | |
| COG1135 | 339 | AbcC ABC-type metal ion transport system, ATPase c | 100.0 | |
| COG1117 | 253 | PstB ABC-type phosphate transport system, ATPase c | 100.0 | |
| cd03288 | 257 | ABCC_SUR2 The SUR domain 2. The sulfonylurea recep | 100.0 | |
| cd03252 | 237 | ABCC_Hemolysin The ABC-transporter hemolysin B is | 100.0 | |
| KOG0065 | 1391 | consensus Pleiotropic drug resistance proteins (PD | 100.0 | |
| PRK14257 | 329 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03252 | 237 | ABCC_Hemolysin The ABC-transporter hemolysin B is | 100.0 | |
| cd03253 | 236 | ABCC_ATM1_transporter ATM1 is an ABC transporter t | 100.0 | |
| COG1120 | 258 | FepC ABC-type cobalamin/Fe3+-siderophores transpor | 100.0 | |
| cd03249 | 238 | ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) | 100.0 | |
| cd03251 | 234 | ABCC_MsbA MsbA is an essential ABC transporter, cl | 100.0 | |
| cd03244 | 221 | ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. | 100.0 | |
| COG1127 | 263 | Ttg2A ABC-type transport system involved in resist | 100.0 | |
| cd03254 | 229 | ABCC_Glucan_exporter_like Glucan exporter ATP-bind | 100.0 | |
| COG3839 | 338 | MalK ABC-type sugar transport systems, ATPase comp | 100.0 | |
| COG3840 | 231 | ThiQ ABC-type thiamine transport system, ATPase co | 100.0 | |
| COG2884 | 223 | FtsE Predicted ATPase involved in cell division [C | 100.0 | |
| COG1124 | 252 | DppF ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| COG1116 | 248 | TauB ABC-type nitrate/sulfonate/bicarbonate transp | 100.0 | |
| KOG0062 | 582 | consensus ATPase component of ABC transporters wit | 100.0 | |
| TIGR02314 | 343 | ABC_MetN D-methionine ABC transporter, ATP-binding | 100.0 | |
| COG1120 | 258 | FepC ABC-type cobalamin/Fe3+-siderophores transpor | 100.0 | |
| cd03251 | 234 | ABCC_MsbA MsbA is an essential ABC transporter, cl | 100.0 | |
| COG1136 | 226 | SalX ABC-type antimicrobial peptide transport syst | 100.0 | |
| COG3839 | 338 | MalK ABC-type sugar transport systems, ATPase comp | 100.0 | |
| COG1127 | 263 | Ttg2A ABC-type transport system involved in resist | 100.0 | |
| cd03288 | 257 | ABCC_SUR2 The SUR domain 2. The sulfonylurea recep | 100.0 | |
| cd03254 | 229 | ABCC_Glucan_exporter_like Glucan exporter ATP-bind | 100.0 | |
| COG3842 | 352 | PotA ABC-type spermidine/putrescine transport syst | 100.0 | |
| cd03253 | 236 | ABCC_ATM1_transporter ATM1 is an ABC transporter t | 100.0 | |
| cd03245 | 220 | ABCC_bacteriocin_exporters ABC-type bacteriocin ex | 100.0 | |
| COG3638 | 258 | ABC-type phosphate/phosphonate transport system, A | 100.0 | |
| COG2884 | 223 | FtsE Predicted ATPase involved in cell division [C | 100.0 | |
| COG3840 | 231 | ThiQ ABC-type thiamine transport system, ATPase co | 100.0 | |
| cd03244 | 221 | ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. | 100.0 | |
| COG1122 | 235 | CbiO ABC-type cobalt transport system, ATPase comp | 100.0 | |
| COG1122 | 235 | CbiO ABC-type cobalt transport system, ATPase comp | 100.0 | |
| COG1121 | 254 | ZnuC ABC-type Mn/Zn transport systems, ATPase comp | 100.0 | |
| cd03249 | 238 | ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) | 100.0 | |
| PRK13631 | 320 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| COG3638 | 258 | ABC-type phosphate/phosphonate transport system, A | 100.0 | |
| cd03248 | 226 | ABCC_TAP TAP, the Transporter Associated with Anti | 100.0 | |
| COG1121 | 254 | ZnuC ABC-type Mn/Zn transport systems, ATPase comp | 100.0 | |
| COG1124 | 252 | DppF ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| cd03261 | 235 | ABC_Org_Solvent_Resistant ABC (ATP-binding cassett | 100.0 | |
| cd03245 | 220 | ABCC_bacteriocin_exporters ABC-type bacteriocin ex | 100.0 | |
| cd03260 | 227 | ABC_PstB_phosphate_transporter Phosphate uptake is | 100.0 | |
| COG1136 | 226 | SalX ABC-type antimicrobial peptide transport syst | 100.0 | |
| PRK14269 | 246 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG4178 | 604 | ABC-type uncharacterized transport system, permeas | 100.0 | |
| TIGR02314 | 343 | ABC_MetN D-methionine ABC transporter, ATP-binding | 100.0 | |
| PRK14250 | 241 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03369 | 207 | ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-ty | 100.0 | |
| COG1118 | 345 | CysA ABC-type sulfate/molybdate transport systems, | 100.0 | |
| COG3842 | 352 | PotA ABC-type spermidine/putrescine transport syst | 100.0 | |
| PRK11432 | 351 | fbpC ferric transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11650 | 356 | ugpC glycerol-3-phosphate transporter ATP-binding | 100.0 | |
| PRK13650 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| COG1116 | 248 | TauB ABC-type nitrate/sulfonate/bicarbonate transp | 100.0 | |
| COG4615 | 546 | PvdE ABC-type siderophore export system, fused ATP | 100.0 | |
| PRK11153 | 343 | metN DL-methionine transporter ATP-binding subunit | 100.0 | |
| TIGR03265 | 353 | PhnT2 putative 2-aminoethylphosphonate ABC transpo | 100.0 | |
| PRK14273 | 254 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13647 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR01186 | 363 | proV glycine betaine/L-proline transport ATP bindi | 100.0 | |
| cd03261 | 235 | ABC_Org_Solvent_Resistant ABC (ATP-binding cassett | 100.0 | |
| PRK10744 | 260 | pstB phosphate transporter ATP-binding protein; Pr | 100.0 | |
| TIGR00972 | 247 | 3a0107s01c2 phosphate ABC transporter, ATP-binding | 100.0 | |
| PRK13637 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03219 | 236 | ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans | 100.0 | |
| cd03296 | 239 | ABC_CysA_sulfate_importer Part of the ABC transpor | 100.0 | |
| PRK14242 | 253 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK13631 | 320 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03256 | 241 | ABC_PhnC_transporter ABC-type phosphate/phosphonat | 100.0 | |
| cd03248 | 226 | ABCC_TAP TAP, the Transporter Associated with Anti | 100.0 | |
| PRK09536 | 402 | btuD corrinoid ABC transporter ATPase; Reviewed | 100.0 | |
| PRK10851 | 353 | sulfate/thiosulfate transporter subunit; Provision | 100.0 | |
| PRK13635 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK09452 | 375 | potA putrescine/spermidine ABC transporter ATPase | 100.0 | |
| cd03263 | 220 | ABC_subfamily_A The ABCA subfamily mediates the tr | 100.0 | |
| PRK13643 | 288 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13646 | 286 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03258 | 233 | ABC_MetN_methionine_transporter MetN (also known a | 100.0 | |
| TIGR03258 | 362 | PhnT 2-aminoethylphosphonate ABC transport system, | 100.0 | |
| cd03224 | 222 | ABC_TM1139_LivF_branched LivF (TM1139) is part of | 100.0 | |
| PRK14267 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR02315 | 243 | ABC_phnC phosphonate ABC transporter, ATP-binding | 100.0 | |
| PRK11650 | 356 | ugpC glycerol-3-phosphate transporter ATP-binding | 100.0 | |
| PRK14235 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| cd03260 | 227 | ABC_PstB_phosphate_transporter Phosphate uptake is | 100.0 | |
| PRK13642 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR00960 | 216 | 3a0501s02 Type II (General) Secretory Pathway (IIS | 100.0 | |
| PRK13636 | 283 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03259 | 213 | ABC_Carb_Solutes_like ABC Carbohydrate and Solute | 100.0 | |
| cd03294 | 269 | ABC_Pro_Gly_Bertaine This family comprises the gly | 100.0 | |
| cd03295 | 242 | ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin | 100.0 | |
| PRK14247 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14259 | 269 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11432 | 351 | fbpC ferric transporter ATP-binding subunit; Provi | 100.0 | |
| cd03291 | 282 | ABCC_CFTR1 The CFTR subfamily domain 1. The cystic | 100.0 | |
| PRK11000 | 369 | maltose/maltodextrin transporter ATP-binding prote | 100.0 | |
| PRK15079 | 331 | oligopeptide ABC transporter ATP-binding protein O | 100.0 | |
| PRK13634 | 290 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13650 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR03005 | 252 | ectoine_ehuA ectoine/hydroxyectoine ABC transporte | 100.0 | |
| PRK14237 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK11831 | 269 | putative ABC transporter ATP-binding protein YrbF; | 100.0 | |
| PRK13651 | 305 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK14244 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR01186 | 363 | proV glycine betaine/L-proline transport ATP bindi | 100.0 | |
| PRK13652 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14251 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR03265 | 353 | PhnT2 putative 2-aminoethylphosphonate ABC transpo | 100.0 | |
| cd03250 | 204 | ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. | 100.0 | |
| PRK14248 | 268 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14268 | 258 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR03864 | 236 | PQQ_ABC_ATP ABC transporter, ATP-binding subunit, | 100.0 | |
| cd03264 | 211 | ABC_drug_resistance_like ABC-type multidrug transp | 100.0 | |
| PRK11629 | 233 | lolD lipoprotein transporter ATP-binding subunit; | 100.0 | |
| cd03265 | 220 | ABC_DrrA DrrA is the ATP-binding protein component | 100.0 | |
| PRK14274 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14236 | 272 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK13632 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13633 | 280 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK14245 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14240 | 250 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK10575 | 265 | iron-hydroxamate transporter ATP-binding subunit; | 100.0 | |
| cd03218 | 232 | ABC_YhbG The ABC transporters belonging to the Yhb | 100.0 | |
| PRK14239 | 252 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK11607 | 377 | potG putrescine transporter ATP-binding subunit; P | 100.0 | |
| cd03226 | 205 | ABC_cobalt_CbiO_domain2 Domain II of the ABC compo | 100.0 | |
| TIGR03411 | 242 | urea_trans_UrtD urea ABC transporter, ATP-binding | 100.0 | |
| cd03266 | 218 | ABC_NatA_sodium_exporter NatA is the ATPase compon | 100.0 | |
| TIGR00960 | 216 | 3a0501s02 Type II (General) Secretory Pathway (IIS | 100.0 | |
| PRK13537 | 306 | nodulation ABC transporter NodI; Provisional | 100.0 | |
| PRK14262 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03268 | 208 | ABC_BcrA_bacitracin_resist The BcrA subfamily repr | 100.0 | |
| PRK14256 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10070 | 400 | glycine betaine transporter ATP-binding subunit; P | 100.0 | |
| PRK10619 | 257 | histidine/lysine/arginine/ornithine transporter su | 100.0 | |
| PRK13635 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03219 | 236 | ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans | 100.0 | |
| cd03255 | 218 | ABC_MJ0796_Lo1CDE_FtsE This family is comprised of | 100.0 | |
| PRK11308 | 327 | dppF dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| PRK09452 | 375 | potA putrescine/spermidine ABC transporter ATPase | 100.0 | |
| PRK13644 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13640 | 282 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14269 | 246 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03369 | 207 | ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-ty | 100.0 | |
| PRK11614 | 237 | livF leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| PRK14249 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13647 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR03410 | 230 | urea_trans_UrtE urea ABC transporter, ATP-binding | 100.0 | |
| PRK14260 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK09493 | 240 | glnQ glutamine ABC transporter ATP-binding protein | 100.0 | |
| PRK11231 | 255 | fecE iron-dicitrate transporter ATP-binding subuni | 100.0 | |
| cd03301 | 213 | ABC_MalK_N The N-terminal ATPase domain of the mal | 100.0 | |
| cd03247 | 178 | ABCC_cytochrome_bd The CYD subfamily implicated in | 100.0 | |
| PRK14243 | 264 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14238 | 271 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14261 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11264 | 250 | putative amino-acid ABC transporter ATP-binding pr | 100.0 | |
| PRK14254 | 285 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13643 | 288 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK10851 | 353 | sulfate/thiosulfate transporter subunit; Provision | 100.0 | |
| PRK13637 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14266 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR03258 | 362 | PhnT 2-aminoethylphosphonate ABC transport system, | 100.0 | |
| TIGR02211 | 221 | LolD_lipo_ex lipoprotein releasing system, ATP-bin | 100.0 | |
| PRK11124 | 242 | artP arginine transporter ATP-binding subunit; Pro | 100.0 | |
| PRK11153 | 343 | metN DL-methionine transporter ATP-binding subunit | 100.0 | |
| cd03263 | 220 | ABC_subfamily_A The ABCA subfamily mediates the tr | 100.0 | |
| PRK11247 | 257 | ssuB aliphatic sulfonates transport ATP-binding su | 100.0 | |
| cd03293 | 220 | ABC_NrtD_SsuB_transporters NrtD and SsuB are the A | 100.0 | |
| PRK13648 | 269 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03300 | 232 | ABC_PotA_N PotA is an ABC-type transporter and the | 100.0 | |
| COG1118 | 345 | CysA ABC-type sulfate/molybdate transport systems, | 100.0 | |
| PRK14270 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03256 | 241 | ABC_PhnC_transporter ABC-type phosphate/phosphonat | 100.0 | |
| PRK14271 | 276 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14250 | 241 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR02673 | 214 | FtsE cell division ATP-binding protein FtsE. This | 100.0 | |
| PRK09536 | 402 | btuD corrinoid ABC transporter ATPase; Reviewed | 100.0 | |
| TIGR02769 | 265 | nickel_nikE nickel import ATP-binding protein NikE | 100.0 | |
| cd03296 | 239 | ABC_CysA_sulfate_importer Part of the ABC transpor | 100.0 | |
| PRK13548 | 258 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| PRK11022 | 326 | dppD dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| PRK10253 | 265 | iron-enterobactin transporter ATP-binding protein; | 100.0 | |
| PRK13638 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK09473 | 330 | oppD oligopeptide transporter ATP-binding componen | 100.0 | |
| PRK13645 | 289 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR00972 | 247 | 3a0107s01c2 phosphate ABC transporter, ATP-binding | 100.0 | |
| PRK13649 | 280 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13641 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR03415 | 382 | ABC_choXWV_ATP choline ABC transporter, ATP-bindin | 100.0 | |
| TIGR02315 | 243 | ABC_phnC phosphonate ABC transporter, ATP-binding | 100.0 | |
| cd03259 | 213 | ABC_Carb_Solutes_like ABC Carbohydrate and Solute | 100.0 | |
| PRK13646 | 286 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK10895 | 241 | lipopolysaccharide ABC transporter ATP-binding pro | 100.0 | |
| PRK14273 | 254 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14252 | 265 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14242 | 253 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| TIGR00968 | 237 | 3a0106s01 sulfate ABC transporter, ATP-binding pro | 100.0 | |
| PRK13634 | 290 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14241 | 258 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| cd03292 | 214 | ABC_FtsE_transporter FtsE is a hydrophilic nucleot | 100.0 | |
| PRK13651 | 305 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| cd03225 | 211 | ABC_cobalt_CbiO_domain1 Domain I of the ABC compon | 100.0 | |
| cd03235 | 213 | ABC_Metallic_Cations ABC component of the metal-ty | 100.0 | |
| cd03255 | 218 | ABC_MJ0796_Lo1CDE_FtsE This family is comprised of | 100.0 | |
| PRK14263 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14258 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR01288 | 303 | nodI ATP-binding ABC transporter family nodulation | 100.0 | |
| PRK14275 | 286 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14253 | 249 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03258 | 233 | ABC_MetN_methionine_transporter MetN (also known a | 100.0 | |
| PRK11000 | 369 | maltose/maltodextrin transporter ATP-binding prote | 100.0 | |
| PRK13639 | 275 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03224 | 222 | ABC_TM1139_LivF_branched LivF (TM1139) is part of | 100.0 | |
| cd03226 | 205 | ABC_cobalt_CbiO_domain2 Domain II of the ABC compo | 100.0 | |
| cd03291 | 282 | ABCC_CFTR1 The CFTR subfamily domain 1. The cystic | 100.0 | |
| cd03290 | 218 | ABCC_SUR1_N The SUR domain 1. The sulfonylurea rec | 100.0 | |
| PRK10744 | 260 | pstB phosphate transporter ATP-binding protein; Pr | 100.0 | |
| TIGR03873 | 256 | F420-0_ABC_ATP proposed F420-0 ABC transporter, AT | 100.0 | |
| cd03264 | 211 | ABC_drug_resistance_like ABC-type multidrug transp | 100.0 | |
| cd03250 | 204 | ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. | 100.0 | |
| TIGR03522 | 301 | GldA_ABC_ATP gliding motility-associated ABC trans | 100.0 | |
| PRK10771 | 232 | thiQ thiamine transporter ATP-binding subunit; Pro | 100.0 | |
| PRK14272 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14265 | 274 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11300 | 255 | livG leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| PRK10908 | 222 | cell division protein FtsE; Provisional | 100.0 | |
| PRK11629 | 233 | lolD lipoprotein transporter ATP-binding subunit; | 100.0 | |
| cd03265 | 220 | ABC_DrrA DrrA is the ATP-binding protein component | 100.0 | |
| PRK15112 | 267 | antimicrobial peptide ABC system ATP-binding prote | 100.0 | |
| cd03298 | 211 | ABC_ThiQ_thiamine_transporter ABC-type thiamine tr | 100.0 | |
| PRK13632 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK10584 | 228 | putative ABC transporter ATP-binding protein YbbA; | 100.0 | |
| PRK13536 | 340 | nodulation factor exporter subunit NodI; Provision | 100.0 | |
| PRK14255 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14246 | 257 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03295 | 242 | ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin | 100.0 | |
| PRK14235 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK13636 | 283 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11607 | 377 | potG putrescine transporter ATP-binding subunit; P | 100.0 | |
| cd03247 | 178 | ABCC_cytochrome_bd The CYD subfamily implicated in | 100.0 | |
| PRK15093 | 330 | antimicrobial peptide ABC transporter ATP-binding | 100.0 | |
| cd03269 | 210 | ABC_putative_ATPase This subfamily is involved in | 100.0 | |
| cd03266 | 218 | ABC_NatA_sodium_exporter NatA is the ATPase compon | 100.0 | |
| PRK13640 | 282 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03268 | 208 | ABC_BcrA_bacitracin_resist The BcrA subfamily repr | 100.0 | |
| cd03246 | 173 | ABCC_Protease_Secretion This family represents the | 100.0 | |
| PRK11701 | 258 | phnK phosphonate C-P lyase system protein PhnK; Pr | 100.0 | |
| PRK09984 | 262 | phosphonate/organophosphate ester transporter subu | 100.0 | |
| TIGR03864 | 236 | PQQ_ABC_ATP ABC transporter, ATP-binding subunit, | 100.0 | |
| PRK13537 | 306 | nodulation ABC transporter NodI; Provisional | 100.0 | |
| cd03218 | 232 | ABC_YhbG The ABC transporters belonging to the Yhb | 100.0 | |
| PRK11144 | 352 | modC molybdate transporter ATP-binding protein; Pr | 100.0 | |
| cd03257 | 228 | ABC_NikE_OppD_transporters The ABC transporter sub | 100.0 | |
| PRK13644 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13642 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| COG0410 | 237 | LivF ABC-type branched-chain amino acid transport | 100.0 | |
| PRK14267 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG0410 | 237 | LivF ABC-type branched-chain amino acid transport | 100.0 | |
| TIGR02211 | 221 | LolD_lipo_ex lipoprotein releasing system, ATP-bin | 100.0 | |
| cd03299 | 235 | ABC_ModC_like Archeal protein closely related to M | 100.0 | |
| PRK10247 | 225 | putative ABC transporter ATP-binding protein YbbL; | 100.0 | |
| cd03262 | 213 | ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP- | 100.0 | |
| PRK14264 | 305 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03294 | 269 | ABC_Pro_Gly_Bertaine This family comprises the gly | 100.0 | |
| PRK10575 | 265 | iron-hydroxamate transporter ATP-binding subunit; | 100.0 | |
| COG4175 | 386 | ProV ABC-type proline/glycine betaine transport sy | 100.0 | |
| PRK13633 | 280 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK13648 | 269 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13652 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13547 | 272 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| cd03225 | 211 | ABC_cobalt_CbiO_domain1 Domain I of the ABC compon | 100.0 | |
| PRK14247 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14274 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14259 | 269 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03301 | 213 | ABC_MalK_N The N-terminal ATPase domain of the mal | 100.0 | |
| PRK11831 | 269 | putative ABC transporter ATP-binding protein YrbF; | 100.0 | |
| PRK00349 | 943 | uvrA excinuclease ABC subunit A; Reviewed | 100.0 | |
| PRK09493 | 240 | glnQ glutamine ABC transporter ATP-binding protein | 100.0 | |
| PRK11247 | 257 | ssuB aliphatic sulfonates transport ATP-binding su | 100.0 | |
| TIGR01188 | 302 | drrA daunorubicin resistance ABC transporter ATP-b | 100.0 | |
| cd03246 | 173 | ABCC_Protease_Secretion This family represents the | 100.0 | |
| PRK11231 | 255 | fecE iron-dicitrate transporter ATP-binding subuni | 100.0 | |
| TIGR03411 | 242 | urea_trans_UrtD urea ABC transporter, ATP-binding | 100.0 | |
| TIGR01277 | 213 | thiQ thiamine ABC transporter, ATP-binding protein | 100.0 | |
| COG1131 | 293 | CcmA ABC-type multidrug transport system, ATPase c | 100.0 | |
| cd03293 | 220 | ABC_NrtD_SsuB_transporters NrtD and SsuB are the A | 100.0 | |
| PRK15079 | 331 | oligopeptide ABC transporter ATP-binding protein O | 100.0 | |
| PRK13638 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03290 | 218 | ABCC_SUR1_N The SUR domain 1. The sulfonylurea rec | 100.0 | |
| PRK14240 | 250 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK10418 | 254 | nikD nickel transporter ATP-binding protein NikD; | 100.0 | |
| cd03234 | 226 | ABCG_White The White subfamily represents ABC tran | 100.0 | |
| TIGR01978 | 243 | sufC FeS assembly ATPase SufC. SufC is part of the | 100.0 | |
| PRK14237 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| TIGR03410 | 230 | urea_trans_UrtE urea ABC transporter, ATP-binding | 100.0 | |
| TIGR02673 | 214 | FtsE cell division ATP-binding protein FtsE. This | 100.0 | |
| PRK13649 | 280 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11614 | 237 | livF leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| PRK13548 | 258 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| PRK14248 | 268 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR03005 | 252 | ectoine_ehuA ectoine/hydroxyectoine ABC transporte | 100.0 | |
| PRK10070 | 400 | glycine betaine transporter ATP-binding subunit; P | 100.0 | |
| PRK14236 | 272 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK11124 | 242 | artP arginine transporter ATP-binding subunit; Pro | 100.0 | |
| TIGR02769 | 265 | nickel_nikE nickel import ATP-binding protein NikE | 100.0 | |
| PRK13645 | 289 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK10247 | 225 | putative ABC transporter ATP-binding protein YbbL; | 100.0 | |
| PRK14245 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03292 | 214 | ABC_FtsE_transporter FtsE is a hydrophilic nucleot | 100.0 | |
| PRK11264 | 250 | putative amino-acid ABC transporter ATP-binding pr | 100.0 | |
| TIGR01288 | 303 | nodI ATP-binding ABC transporter family nodulation | 100.0 | |
| PRK14249 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10895 | 241 | lipopolysaccharide ABC transporter ATP-binding pro | 100.0 | |
| PRK14268 | 258 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13641 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03257 | 228 | ABC_NikE_OppD_transporters The ABC transporter sub | 100.0 | |
| PRK10253 | 265 | iron-enterobactin transporter ATP-binding protein; | 100.0 | |
| PRK13536 | 340 | nodulation factor exporter subunit NodI; Provision | 100.0 | |
| cd03235 | 213 | ABC_Metallic_Cations ABC component of the metal-ty | 100.0 | |
| PRK14251 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14239 | 252 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| TIGR03522 | 301 | GldA_ABC_ATP gliding motility-associated ABC trans | 100.0 | |
| TIGR02142 | 354 | modC_ABC molybdenum ABC transporter, ATP-binding p | 100.0 | |
| PRK14243 | 264 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK10619 | 257 | histidine/lysine/arginine/ornithine transporter su | 100.0 | |
| PRK11248 | 255 | tauB taurine transporter ATP-binding subunit; Prov | 100.0 | |
| PRK10584 | 228 | putative ABC transporter ATP-binding protein YbbA; | 100.0 | |
| PRK14253 | 249 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14271 | 276 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR03415 | 382 | ABC_choXWV_ATP choline ABC transporter, ATP-bindin | 100.0 | |
| PRK14256 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG4555 | 245 | NatA ABC-type Na+ transport system, ATPase compone | 100.0 | |
| TIGR03873 | 256 | F420-0_ABC_ATP proposed F420-0 ABC transporter, AT | 100.0 | |
| PRK10419 | 268 | nikE nickel transporter ATP-binding protein NikE; | 100.0 | |
| PRK10908 | 222 | cell division protein FtsE; Provisional | 100.0 | |
| PRK14244 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14238 | 271 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| COG4175 | 386 | ProV ABC-type proline/glycine betaine transport sy | 100.0 | |
| cd03298 | 211 | ABC_ThiQ_thiamine_transporter ABC-type thiamine tr | 100.0 | |
| PRK14270 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14261 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG4555 | 245 | NatA ABC-type Na+ transport system, ATPase compone | 100.0 | |
| PRK11300 | 255 | livG leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| PRK13639 | 275 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14262 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK09984 | 262 | phosphonate/organophosphate ester transporter subu | 100.0 | |
| cd03262 | 213 | ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP- | 100.0 | |
| TIGR02982 | 220 | heterocyst_DevA ABC exporter ATP-binding subunit, | 100.0 | |
| PRK11308 | 327 | dppF dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| PRK11144 | 352 | modC molybdate transporter ATP-binding protein; Pr | 100.0 | |
| cd03269 | 210 | ABC_putative_ATPase This subfamily is involved in | 100.0 | |
| PRK10771 | 232 | thiQ thiamine transporter ATP-binding subunit; Pro | 100.0 | |
| TIGR03740 | 223 | galliderm_ABC gallidermin-class lantibiotic protec | 100.0 | |
| PRK11022 | 326 | dppD dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| PRK14260 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK09473 | 330 | oppD oligopeptide transporter ATP-binding componen | 100.0 | |
| PRK14254 | 285 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG1131 | 293 | CcmA ABC-type multidrug transport system, ATPase c | 100.0 | |
| TIGR02323 | 253 | CP_lyasePhnK phosphonate C-P lyase system protein | 100.0 | |
| cd03233 | 202 | ABC_PDR_domain1 The pleiotropic drug resistance (P | 100.0 | |
| PRK13547 | 272 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| cd03230 | 173 | ABC_DR_subfamily_A This family of ATP-binding prot | 100.0 | |
| COG0444 | 316 | DppD ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| PRK15112 | 267 | antimicrobial peptide ABC system ATP-binding prote | 100.0 | |
| PRK14241 | 258 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| TIGR00968 | 237 | 3a0106s01 sulfate ABC transporter, ATP-binding pro | 100.0 | |
| cd03300 | 232 | ABC_PotA_N PotA is an ABC-type transporter and the | 100.0 | |
| PRK14265 | 274 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03229 | 178 | ABC_Class3 This class is comprised of all BPD (Bin | 100.0 | |
| TIGR01978 | 243 | sufC FeS assembly ATPase SufC. SufC is part of the | 100.0 | |
| PRK14272 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG4619 | 223 | ABC-type uncharacterized transport system, ATPase | 100.0 | |
| PRK14252 | 265 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK09544 | 251 | znuC high-affinity zinc transporter ATPase; Review | 100.0 | |
| PRK14275 | 286 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR01277 | 213 | thiQ thiamine ABC transporter, ATP-binding protein | 100.0 | |
| COG1137 | 243 | YhbG ABC-type (unclassified) transport system, ATP | 100.0 | |
| TIGR01188 | 302 | drrA daunorubicin resistance ABC transporter ATP-b | 100.0 | |
| PRK14266 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK15093 | 330 | antimicrobial peptide ABC transporter ATP-binding | 100.0 | |
| PRK14263 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03228 | 171 | ABCC_MRP_Like The MRP (Mutidrug Resistance Protein | 100.0 |
| >KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-197 Score=1770.98 Aligned_cols=1070 Identities=52% Similarity=0.845 Sum_probs=985.5
Q ss_pred chHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhc
Q 001411 2 QTGHALRYLSQFFVGFAVGFTSVWQLTLLTLAVVPLIAVAGGAYTITMSTLSEKGEAAYGEAGKVAEEIISQVRAVYAFV 81 (1082)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~ 81 (1082)
|++.+++.+.+|++++++.|+..|+|+++++.+.|++++.+.++.+.+.+...+.+++++++.+.++|++.++|||.+|+
T Consensus 148 Kvg~~i~~~~~fi~g~ii~F~~~W~Ltlv~l~~~Pli~~~g~~~a~~~~~~t~ke~~~ya~Ag~iaEe~i~~iRTV~af~ 227 (1228)
T KOG0055|consen 148 KVGNFIQLLATFIAGFVIGFYYGWKLTLVMLSFIPLIAIAGGLLARFLSKLTEKEQEAYAKAGSIAEEVISSIRTVYAFN 227 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhc
Confidence 67889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHH
Q 001411 82 GEAKAIESYSHSLKEALKQGKKSGVAKGIGVGLTYGLLFCAWALLLWYAGILVRHGDTNGGKAFTTIINVIFSGFALGQA 161 (1082)
Q Consensus 82 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~l~~g~~~~~~~~~~~~~~~l~~~ 161 (1082)
.|+.+.++|.+..+...+...+...+.++..++..++.++.+++.+|||+.++..+..++|.+++++++++.....+++.
T Consensus 228 gq~~e~~ry~~~L~~~~k~gi~~g~~~G~~~G~~~~~~~~~~a~~~WyG~~li~~~~~~~g~v~~v~~~vl~g~~sLgqa 307 (1228)
T KOG0055|consen 228 GEKKEIERYSKALENALKFGIKKGLFKGLGLGFTFFLLFASYALAFWYGSTLILNGGYNGGDVITVFFSVLIGGMSLGQA 307 (1228)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeehhhhhhhhhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999888888888999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCCCCcEEEEEEEEECCCCCC-ccccceeEEEeCCCEEEEEc
Q 001411 162 APNLAAIAKGKAAAANIISIIKENSHSSERPGDDGITLPKLAGQIEFSEVCFAYPSRPH-MVFENLNFSVDAGKTFAFVG 240 (1082)
Q Consensus 162 ~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~-~~l~~i~l~i~~g~~~~ivG 240 (1082)
.|.+..+..+++|+.+|++.++..+..+.. ...+.......+.|+|+||+|+||.+++ ++|+|+||+|++|+.+||||
T Consensus 308 ~p~l~~f~~a~~aa~~I~~~i~~~~~i~~~-~~~~~~~~~~~g~ief~nV~FsYPsRpdv~Il~g~sl~i~~G~~valVG 386 (1228)
T KOG0055|consen 308 SPHLSAFAKARAAAYRIFETIDRKPSIDPY-SKGGRVLSSIKGEIEFRNVCFSYPSRPDVKILKGVSLKIPSGQTVALVG 386 (1228)
T ss_pred ccchHHHhccccchHHHHHHhcCCCCCCcc-cccCCcccccccceEEEEEEecCCCCCcchhhCCeEEEeCCCCEEEEEC
Confidence 999999999999999999999877665422 2222234456789999999999998874 49999999999999999999
Q ss_pred CCCCcHHHHHHHHHhCCCCCCcEEEECCeeCCCCCHHHHhhhceEEccCCCcChhcHHHHHhcCCCCCCHHHHHHHHHHh
Q 001411 241 PSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNILLGKEDASMDRVIEAAKAA 320 (1082)
Q Consensus 241 ~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ti~~ni~~g~~~~~~~~~~~~~~~~ 320 (1082)
||||||||++++|.|+|+|++|+|.+||.|+++++.+|+|++||.|+|+|.||++||+|||.||+|+++.+++.+||+++
T Consensus 387 ~SGsGKST~i~LL~RfydP~~G~V~idG~di~~~~~~~lr~~iglV~QePvlF~~tI~eNI~~G~~dat~~~i~~a~k~a 466 (1228)
T KOG0055|consen 387 PSGSGKSTLIQLLARFYDPTSGEVLIDGEDIRNLNLKWLRSQIGLVSQEPVLFATTIRENIRYGKPDATREEIEEAAKAA 466 (1228)
T ss_pred CCCCCHHHHHHHHHHhcCCCCceEEEcCccchhcchHHHHhhcCeeeechhhhcccHHHHHhcCCCcccHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHhcCCCCccccccCCCCCCChHHHHHHHHHHhcccCCCeeEEeCcccCCCHHHHHHHHHHHHHHcCCCeEEEEcc
Q 001411 321 NAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAH 400 (1082)
Q Consensus 321 ~~~~~i~~lp~g~~t~~g~~g~~LSgGqkqri~lARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~vtH 400 (1082)
++++|+..||+||+|.+||+|.+|||||||||||||||++||+||||||||||||+++|+.++++|.+..+|+|+|+|||
T Consensus 467 na~~fi~~lp~g~~T~vge~g~qLSGGQKQRIAIARalv~~P~ILLLDEaTSaLD~~se~~Vq~ALd~~~~grTTivVaH 546 (1228)
T KOG0055|consen 467 NAHDFILKLPDGYDTLVGERGVQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESERVVQEALDKASKGRTTIVVAH 546 (1228)
T ss_pred cHHHHHHhhHHhhcccccCCCCCCChHHHHHHHHHHHHHhCCCEEEecCcccccCHHHHHHHHHHHHHhhcCCeEEEEee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccccccCCEEEEEeCCEEEEecCchhhhhcCchhHHHHHhhhccccCCC--C--cccCCCCCCCC-CCCCCCCCcccch
Q 001411 401 RLSTVRDVDTIMVLKNGQVVESGTHVDLISKGGEYAALVNLQSSEHLSNP--S--SICYSGSSRYS-SFRDFPSSRRYDV 475 (1082)
Q Consensus 401 ~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~--~--~~~~~~~~~~~-~~~~~~~~~~~~~ 475 (1082)
|++++++||+|++|++|+|+|.|+|+||++..|.|.++++.|......+. . ........+.. +....+..+....
T Consensus 547 RLStIrnaD~I~v~~~G~IvE~G~h~ELi~~~G~Y~~lv~~Q~~~~~~~~~~~~~~~~~~~~~s~~~s~~~~~~~~~~~~ 626 (1228)
T KOG0055|consen 547 RLSTIRNADKIAVMEEGKIVEQGTHDELIALGGIYSSLVRLQELEKAAEDEEEEESLKEERSRSLKSSSSSPSLSRGSNR 626 (1228)
T ss_pred ehhhhhccCEEEEEECCEEEEecCHHHHHhccchHHHHHHHHhhhhhhhccccccchhhhhhhccccccccccccCCccc
Confidence 99999999999999999999999999999999999999998865442211 0 00000000000 0000000000000
Q ss_pred hhhh---hhhhhhccCCCCCCCchhHHHHHHHhcchhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCchhhHhHH
Q 001411 476 EFES---SKRRELQSSDQSFAPSPSIWELLKLNAAEWPYAVLGSVGAILAGMEAPLFALGITHILTAFYSPHDSQIKRVV 552 (1082)
Q Consensus 476 ~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 552 (1082)
.... ....+.+..........++++++++++++|++++++.+++++.|...|++++.+++++..+...+++......
T Consensus 627 ~~~~~~~~~~e~~~~~~~~~~~~~s~~~i~k~~~pe~~~l~lG~i~a~i~G~~~P~fa~~~s~~~~~f~~~~~~~~~~~~ 706 (1228)
T KOG0055|consen 627 SNLLSVKPEGEDPEEPVSEEDEKVSFWRIFKLNKPEWPYLLLGSLGAAIRGATYPLFAYVFSQVLEAFYPPDDDELKREV 706 (1228)
T ss_pred cccccccccccccccccccccccccHHHHHHhccchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCChHHHHHHH
Confidence 0000 0000000000111145678999999999999999999999999999999999999999999876655555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccccccCCChhHHHHHHHhhHHHHHHHHHHH
Q 001411 553 DQVALIFVGLAVVTIPVYLLQHYFYTLMGEHLTARVRLSMFSAILSNEIGWFDLDENNTGLLISTLAADATLVRSALADR 632 (1082)
Q Consensus 553 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~l~~~~~ffd~~~~~~G~il~r~s~D~~~i~~~~~~~ 632 (1082)
..|.++|+++++..+++.+++.|++.+++++++.++|..+|+++++++++|||.++|+ |.|.+|+++|...++..+.+.
T Consensus 707 ~~~al~f~~l~~~~~i~~~~q~~~f~~~ge~Lt~R~R~~~F~~ll~qd~~wFD~~~ns-g~l~~RLa~Da~~vr~~v~~r 785 (1228)
T KOG0055|consen 707 RAWALIFLGLGIVSGITNFLQHYFFGIAGEKLTKRLRSMMFRALLRQEVGWFDDPENS-GALSSRLATDASNVRAAVGDR 785 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCCccc-hHHHHHHhcchHHHHHHHHHH
Confidence 5599999999999999999999999999999999999999999999999999999999 999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHccHHHHHHcCc
Q 001411 633 LSIIVQNVALTVTAFVIAFILSWRLAAVVAASLPLLIGAFVAEQLFLKGFGGDYNRAYSRATSVAREAIANIRTVAAYGI 712 (1082)
Q Consensus 633 l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~tIra~~~ 712 (1082)
+..+++++..++.+++++|+++|+++++++++.|++++..+...+++..+..+.+..+.++.....|++++++||++|+.
T Consensus 786 l~~vv~~~~~~~~~iiiaf~~~W~lalv~la~~Pll~~~~~~~~~~~~~~~~~~~~~~~ea~~iA~eai~NIrTV~al~~ 865 (1228)
T KOG0055|consen 786 LSLVVQNIAAVIIGIIIAFIYGWRLALVVLATFPLLILSGYLQKKFLKGFSKDDKKAYEEASKIAIEAVSNIRTVAALCA 865 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 001411 713 EKRISIQFASELSQPNKQALLRGHISGFGYGVSQLLSLCSYALGLWYASVLIKQKGSNFGDIMKSFMVLIITALAVAETL 792 (1082)
Q Consensus 713 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 792 (1082)
|+++.+.|.+.++...+...+++.++++.+++++.+.++.+++++|+|.+++..|.+++.+++.+++++.+.+..+++..
T Consensus 866 e~~~~~~y~~~l~~p~~~~~~~~~i~gl~f~~sqs~~~~~~A~~f~~G~~Li~~g~~~~~~~~~vf~~l~~ta~~~~~~~ 945 (1228)
T KOG0055|consen 866 EEKFMELYKEELEKPRKSSFKRGLISGLGFGFSQSLLFFVYALSFWYGARLISNGEMTFEDVFRVFMALSFTAMALGQAS 945 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccccCCCCCCCCcccccccccEEEEeEEEECCCCCCcccccceeEEeeCCcEEEEEcCC
Q 001411 793 ALAPDIVKGSQALGPVFGILYRKTAIQPDDPASKEVTEIKGNIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQS 872 (1082)
Q Consensus 793 ~~~~~~~~~~~a~~ri~~~~~~~~~~~~~~~~~~~~~~~~g~I~~~~Vs~~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~s 872 (1082)
.+.|++.++..|+.+++.+++++|..+++++.+...++.+|+|+|+||+|+||+||+.+||+|+||+|++||++|+||||
T Consensus 946 s~~Pd~~ka~~Aa~~iF~i~dr~~~i~~~~~~~~~~~~~~G~I~~~~V~F~YPsRP~~~Il~~l~l~i~~GqTvALVG~S 1025 (1228)
T KOG0055|consen 946 SYAPDISKAKIAAGSIFEILDRKPTIDPDSTSGGKLPNVKGDIEFRNVSFAYPTRPDVPVLNNLSLSIRAGQTVALVGPS 1025 (1228)
T ss_pred hhCcHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCccccceeEEEEeeeEeeCCCCCCchhhcCCcEEecCCCEEEEECCC
Confidence 99999999999999999999999877765533434456899999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHhccccCCccEEEECCccCCCCCHHHHhcceEEEcccCccccccHHHHhccCCCCCCHHHHHHHHHHhcH
Q 001411 873 GSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRKIGLVQQEPALFSTTIYENIKYGNEDASEIELMKATKAANA 952 (1082)
Q Consensus 873 GSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR~~i~~VpQdp~Lf~gTIreNl~~~~~~~~d~ei~~al~~a~l 952 (1082)
||||||++.+|.|||+|.+|.|.|||+||+++++++||++|++|+|||.||++||||||.||.++++++||.+|++.|++
T Consensus 1026 GsGKSTvI~LLeRfYdp~~G~V~IDg~dik~lnl~~LR~~i~lVsQEP~LF~~TIrENI~YG~~~vs~~eIi~Aak~ANa 1105 (1228)
T KOG0055|consen 1026 GSGKSTVISLLERFYDPDAGKVKIDGVDIKDLNLKWLRKQIGLVSQEPVLFNGTIRENIAYGSEEVSEEEIIEAAKLANA 1105 (1228)
T ss_pred CCCHHHHHHHHHHhcCCCCCeEEECCcccccCCHHHHHHhcceeccCchhhcccHHHHHhccCCCCCHHHHHHHHHHhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999666899999999999999
Q ss_pred HHHHhhCcccccccccCCCCCCChhHHHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCc
Q 001411 953 HGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLMEGRTTIMVAHRL 1032 (1082)
Q Consensus 953 ~~~i~~lp~gldt~v~e~G~~LSgGQrQrlaLARAlL~~~~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHrl 1032 (1082)
|+||.+||+||||.|||+|.+||||||||||||||++|||||||||||||+||.++|+.||++|++...+||+|+|||||
T Consensus 1106 H~FI~sLP~GyDT~vGerG~QLSGGQKQRIAIARAilRnPkILLLDEATSALDseSErvVQeALd~a~~gRT~IvIAHRL 1185 (1228)
T KOG0055|consen 1106 HNFISSLPQGYDTRVGERGVQLSGGQKQRIAIARAILRNPKILLLDEATSALDSESERVVQEALDRAMEGRTTIVIAHRL 1185 (1228)
T ss_pred HHHHhcCcCcccCccCcccCcCCchHHHHHHHHHHHHcCCCeeeeeccchhhhhhhHHHHHHHHHHhhcCCcEEEEecch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhccCEEEEEeCCEEEEecChHHHhhhccchHHHHHHHhh
Q 001411 1033 STIRNADKIAVLQQGKVAEIGSHEQLLRKENGIYKQLIRLQQ 1074 (1082)
Q Consensus 1033 ~ti~~~DrI~Vl~~G~ive~G~~~eLl~~~~g~f~~l~~~~~ 1074 (1082)
+||++||.|+|+++|+|+|+|||++|++ ++|.|++|++.|.
T Consensus 1186 STIqnaD~I~Vi~~G~VvE~GtH~~L~~-~~G~Y~~Lv~~q~ 1226 (1228)
T KOG0055|consen 1186 STIQNADVIAVLKNGKVVEQGTHDELLA-KRGIYFRLVQLQS 1226 (1228)
T ss_pred hhhhcCCEEEEEECCEEEecccHHHHHh-CCCchHHHhhhcc
Confidence 9999999999999999999999999999 7999999998875
|
|
| >KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-172 Score=1590.45 Aligned_cols=1035 Identities=23% Similarity=0.326 Sum_probs=840.2
Q ss_pred HHHHHHHHHHHHHHHHHhHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcc
Q 001411 7 LRYLSQFFVGFAVGFTSVWQL----TLLTLAVVPLIAVAGGAYTITMSTLSEKGEAAYGEAGKVAEEIISQVRAVYAFVG 82 (1082)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~l----~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~ 82 (1082)
+..+.....-++++.++.|.. +++.++++.+++.+..++++++++.+.+.++..+++.+.++|.++|||+||+|+|
T Consensus 319 ~h~~w~~Plqi~~~l~lLy~~LG~sa~~G~~~~il~~p~n~~~a~~~~~~q~~~m~~~D~Rik~~nEiL~~IkviK~yaW 398 (1381)
T KOG0054|consen 319 LHLLWSAPLQIILALYLLYGLLGPSALAGVAVMVLLIPLNSFLAKKIAKFQKRLMKRKDERIKLMNEILNGIKVIKLYAW 398 (1381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhHhhhhHhh
Confidence 344444444556666666654 4555566666777888999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHcCCCChHHHHHHHHHHHHHHHHHHHH
Q 001411 83 EAKAIESYSHSLKEALKQGKKSGVAKGIGVGLTYGLLFCAWALLLWYAGIL-VRHGDTNGGKAFTTIINVIFSGFALGQA 161 (1082)
Q Consensus 83 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-v~~~~l~~g~~~~~~~~~~~~~~~l~~~ 161 (1082)
|+.|.+++++.|+++.+..+|.....++...+..+...+..+ +.+++|. ..++.+++..+|+++..+-....|+..+
T Consensus 399 E~~F~~~I~~~R~~El~~lrk~~~~~~~~~~~~~~~p~lv~~--~tF~~~v~~~~~~lt~~~aF~slalfniLr~pl~~~ 476 (1381)
T KOG0054|consen 399 EKPFLKKIEDLRQKELKLLRKSAYLSALNSFLNFFSPVLVSV--VTFVVFVLLLGNLLTASTAFTSLALFNILRFPLFML 476 (1381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHhhccCccccHhHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999888877766665555433 3455565 5577889989999887666667889999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCCCCcEEEEEEEEECCC-CCCccccceeEEEeCCCEEEEEc
Q 001411 162 APNLAAIAKGKAAAANIISIIKENSHSSERPGDDGITLPKLAGQIEFSEVCFAYPS-RPHMVFENLNFSVDAGKTFAFVG 240 (1082)
Q Consensus 162 ~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~-~~~~~l~~i~l~i~~g~~~~ivG 240 (1082)
+..+..+.++.+|.+|+.+|+..++..+ . ..........+..++++|.+|+|+. .+.+.|+||||+|++|+++||||
T Consensus 477 P~~i~~~vqa~VS~~Ri~~fl~~~e~~~-~-~~~~~~~~~~~~~i~i~~~sfsW~~~~~~~tL~dIn~~i~~G~lvaVvG 554 (1381)
T KOG0054|consen 477 PSVISQLVQAKVSLKRLKEFLLSEELDP-D-SVERSPDEAGENAIEIKNGSFSWDSESPEPTLKDINFEIKKGQLVAVVG 554 (1381)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCcccCc-c-ccccCCCCCCCceEEEeeeeEecCCCCCcccccceeEEecCCCEEEEEC
Confidence 9999999999999999999996543222 1 1110111223456999999999975 23449999999999999999999
Q ss_pred CCCCcHHHHHHHHHhCCCCCCcEEEECCeeCCCCCHHHHhhhceEEccCCCcChhcHHHHHhcCCCCCCHHHHHHHHHHh
Q 001411 241 PSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNILLGKEDASMDRVIEAAKAA 320 (1082)
Q Consensus 241 ~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ti~~ni~~g~~~~~~~~~~~~~~~~ 320 (1082)
+.|||||||+.+|+|++++.+|++.++| .++||||+||+|++||||||+||.|. +.+++.++.+.|
T Consensus 555 ~vGsGKSSLL~AiLGEm~~~sG~v~v~g-------------siaYv~Q~pWI~ngTvreNILFG~~~-d~~rY~~Vi~aC 620 (1381)
T KOG0054|consen 555 PVGSGKSSLLSAILGEMPKLSGSVAVNG-------------SVAYVPQQPWIQNGTVRENILFGSPY-DEERYDKVIKAC 620 (1381)
T ss_pred CCCCCHHHHHHHHhcCcccccceEEEcC-------------eEEEeccccHhhCCcHHHhhhcCccc-cHHHHHHHHHHc
Confidence 9999999999999999999999999998 49999999999999999999999886 467788888888
Q ss_pred chHHHHhcCCCCccccccCCCCCCChHHHHHHHHHHhcccCCCeeEEeCcccCCCHHHHH-HHHHHHHHHcCCCeEEEEc
Q 001411 321 NAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESEL-IVQRALEKIMSNRTTIVVA 399 (1082)
Q Consensus 321 ~~~~~i~~lp~g~~t~~g~~g~~LSgGqkqri~lARal~~~~~illlDEpts~LD~~~~~-~i~~~l~~~~~~~t~i~vt 399 (1082)
++.+|++.||.|+.|.|||+|.+|||||||||+||||+|+|+||++||||+||+|+|+.+ .+.++++++.++||+|+||
T Consensus 621 ~L~~Dle~Lp~GD~TeIGErGinLSGGQKqRIsLARAVY~~adIYLLDDplSAVDahvg~~if~~ci~~~L~~KT~ILVT 700 (1381)
T KOG0054|consen 621 ALKKDLEILPFGDLTEIGERGINLSGGQKQRISLARAVYQDADIYLLDDPLSAVDAHVGKHIFEECIRGLLRGKTVILVT 700 (1381)
T ss_pred cCHhHHhhcCCCCcceecCCccCCcHhHHHHHHHHHHHhccCCEEEEcCcchhhhHhhhHHHHHHHHHhhhcCCEEEEEe
Confidence 899999999999999999999999999999999999999999999999999999999765 6678888888999999999
Q ss_pred cCccccccCCEEEEEeCCEEEEecCchhhhhcCchhHHHHHhhhccccCC-CCcccCCCCCCCCCC-CCCCCCcccc---
Q 001411 400 HRLSTVRDVDTIMVLKNGQVVESGTHVDLISKGGEYAALVNLQSSEHLSN-PSSICYSGSSRYSSF-RDFPSSRRYD--- 474 (1082)
Q Consensus 400 H~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~--- 474 (1082)
|.+++++.||+|++|+||+|.+.|+++|+++.+..+.++......+...+ +.............. +.........
T Consensus 701 Hql~~L~~ad~Iivl~~G~I~~~Gty~el~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 780 (1381)
T KOG0054|consen 701 HQLQFLPHADQIIVLKDGKIVESGTYEELLKSGGDFAELAHEEESEQEEEASEKDLESGESSRESESRSLESLSSEEEKS 780 (1381)
T ss_pred CchhhhhhCCEEEEecCCeEecccCHHHHHhcchhHHHHhhccchhhccccccccccccccccchhhhhhhhhccccccc
Confidence 99999999999999999999999999999998888888854333222111 000000000000000 0000000000
Q ss_pred --hhhhhhhhhhhccCCCCCCCchhHHHHHHHhcchhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCchhhH---
Q 001411 475 --VEFESSKRRELQSSDQSFAPSPSIWELLKLNAAEWPYAVLGSVGAILAGMEAPLFALGITHILTAFYSPHDSQIK--- 549 (1082)
Q Consensus 475 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 549 (1082)
.+....+..+.++ +..+...+.-+..|.+...++....++ +..............+|..+|..+.....
T Consensus 781 ~~~~~~~~~~~~~ee---~~~G~v~~~vY~~Y~~a~~g~~~~~~~---~~~~v~~~~~~~~~~~WLs~W~~~~~~~~~~~ 854 (1381)
T KOG0054|consen 781 KDEKEEEDKLVQEEE---RETGKVSWSVYKKYIKAAGGFLLVLLI---LLLFVLTQVLQIASNYWLSYWTDDGEDNGTTT 854 (1381)
T ss_pred ccccchhhHHHHHHH---HhcCEeeHHHHHHHHHhcccHHHHHHH---HHHHHHHHHHHHHHHHHHHHhcCCcccccccC
Confidence 0000000000111 122222222222222222222211111 11111222334456677788865432211
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccccccCCChhHHHHHHHhhHHHHHHHH
Q 001411 550 RVVDQVALIFVGLAVVTIPVYLLQHYFYTLMGEHLTARVRLSMFSAILSNEIGWFDLDENNTGLLISTLAADATLVRSAL 629 (1082)
Q Consensus 550 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~l~~~~~ffd~~~~~~G~il~r~s~D~~~i~~~~ 629 (1082)
....+|+++|.+++++..++..++.+.+...+.++++.||++|+++++++||+|||. +|+|||+||||+|++.+|..+
T Consensus 855 ~~~~~~~~vY~~l~~~~~~~~~~rs~~~~~~~l~aS~~Lh~~ml~~Ilrapm~FFdt--TP~GRILNRFSkD~~~vD~~L 932 (1381)
T KOG0054|consen 855 VSTSFYLGVYALLGVASSLLTLLRSFLFAKGGLKASRKLHDKLLNSILRAPMSFFDT--TPTGRILNRFSKDIDTVDVLL 932 (1381)
T ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhcCC--CCccchhhhcccchHHHHHhh
Confidence 245679999999999999999999999999999999999999999999999999996 899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH----HHHHHHHHHHccHH
Q 001411 630 ADRLSIIVQNVALTVTAFVIAFILSWRLAAVVAASLPLLIGAFVAEQLFLKGFGGDYNRAYS----RATSVAREAIANIR 705 (1082)
Q Consensus 630 ~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~e~l~g~~ 705 (1082)
|..+..++++++.+++.++++.+..|+. +++++|+.+++++++. |+...+|+++|..+ ...+|+.|++.|+.
T Consensus 933 p~~~~~~~~~~~~~l~~~~vi~~~~P~f---li~~~pl~v~~~~~~~-~Y~~tsReLkRLesitRSPi~sh~~Etl~Gls 1008 (1381)
T KOG0054|consen 933 PFTLEFFLQSLLNVLGILVVISYVTPWF---LIAIIPLGVIYYFVQR-YYLATSRELKRLESITRSPIYSHFSETLQGLS 1008 (1381)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHhHHH---HHHHHHHHHHHHHHHH-HHHHHhHHHHHhhhcccchHHHhHHHHhcCcc
Confidence 9999999999999999998888887754 5666777766655554 45556899998653 33499999999999
Q ss_pred HHHHcCcHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 001411 706 TVAAYGIEKRISIQFASELSQPNKQALLRGHISGFGYGVSQLLSLCSYALGLWYASVLIKQKGSNFGDIMKSFMVLIITA 785 (1082)
Q Consensus 706 tIra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 785 (1082)
|||||+.+++|.+++....|.++++.+.......|.....+++..+..+.+..+....-... .+.|.+..++.+.....
T Consensus 1009 TIRAf~~~~rf~~~~~~~~D~~~~~~f~~~~a~RWla~Rle~ig~~~v~~~al~~vl~~~~~-~~~g~vGLslsyal~lt 1087 (1381)
T KOG0054|consen 1009 TIRAFGKEERFIQENDELIDENSRAFFLSISANRWLAVRLELLGNLVVLIAALFAVLLPSGL-ISPGLVGLSLSYALQLT 1087 (1381)
T ss_pred eeeeccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCC-CCcchHHHHHHHHHHHH
Confidence 99999999999999999999999999988877777776666666555554444433332222 66788888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCCCC--CcccccccccEEEEeEEEECCCCCCcccccceeEEeeCC
Q 001411 786 LAVAETLALAPDIVKGSQALGPVFGILYRKTAIQPDDPA--SKEVTEIKGNIELRNVSFKYPVRPDITIFENLNLKVSAG 863 (1082)
Q Consensus 786 ~~~~~~~~~~~~~~~~~~a~~ri~~~~~~~~~~~~~~~~--~~~~~~~~g~I~~~~Vs~~Y~~~~~~~vL~~vsl~I~~G 863 (1082)
..+...+....++++.+.+++|+.+|.+.++|.+.+.+. .++.||.+|.|+|+|++.+|... .++|||||||+|+||
T Consensus 1088 ~~l~~~vR~~~elEn~m~SVERv~eY~~~~~E~p~~~~~~~pp~~WP~~G~I~f~~~~~RYrp~-lp~VLk~is~~I~p~ 1166 (1381)
T KOG0054|consen 1088 GLLQWLVRQSSELENNMVSVERVLEYTDIPSEAPLEIEESRPPPSWPSKGEIEFEDLSLRYRPN-LPLVLKGISFTIKPG 1166 (1381)
T ss_pred HHHHHHHHHHHHHHhcchhhhHHHHHhcCCCCCCCCCcCCCCCCCCCCCCeEEEEEeEEEeCCC-CcchhcCceEEEcCC
Confidence 888888999999999999999999999877662222222 24458999999999999999632 357999999999999
Q ss_pred cEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCccCCCCCHHHHhcceEEEcccCccccccHHHHhccCCCCCCHHHH
Q 001411 864 RSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRKIGLVQQEPALFSTTIYENIKYGNEDASEIEL 943 (1082)
Q Consensus 864 e~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR~~i~~VpQdp~Lf~gTIreNl~~~~~~~~d~ei 943 (1082)
||||||||||||||||+++|+|+.+|.+|+|.|||+||+++++++||+++++|||||+||+||+|+|||| ..+++|++|
T Consensus 1167 eKVGIVGRTGaGKSSL~~aLFRl~e~~~G~I~IDgvdI~~igL~dLRsrlsIIPQdPvLFsGTvR~NLDP-f~e~sD~~I 1245 (1381)
T KOG0054|consen 1167 EKVGIVGRTGAGKSSLILALFRLVEPAEGEILIDGVDISKIGLHDLRSRLSIIPQDPVLFSGTVRFNLDP-FDEYSDDEI 1245 (1381)
T ss_pred ceEEEeCCCCCCHHHHHHHHHHhcCccCCeEEEcCeecccccHHHHHhcCeeeCCCCceecCccccccCc-ccccCHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999 568999999
Q ss_pred HHHHHHhcHHHHHhhCcccccccccCCCCCCChhHHHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHhcCCc
Q 001411 944 MKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLMEGR 1023 (1082)
Q Consensus 944 ~~al~~a~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlaLARAlL~~~~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~ 1023 (1082)
|+||++++++++|+++|+|||++|.|+|.|||.||||++||||||||++|||+||||||++|++||..||++||+.|++|
T Consensus 1246 W~ALe~~~Lk~~v~~~p~~Ld~~v~egG~N~SvGQRQLlCLARALLr~skILvLDEATAsVD~~TD~lIQ~tIR~~F~dc 1325 (1381)
T KOG0054|consen 1246 WEALERCQLKDVVSSLPGGLDSEVSEGGENFSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREEFKDC 1325 (1381)
T ss_pred HHHHHHhChHHHHhhCCcCCCceecCCCccCChHHHHHHHHHHHHhccCCEEEEecccccCChHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEecCchhhhccCEEEEEeCCEEEEecChHHHhhhccchHHHHHHHhh
Q 001411 1024 TTIMVAHRLSTIRNADKIAVLQQGKVAEIGSHEQLLRKENGIYKQLIRLQQ 1074 (1082)
Q Consensus 1024 TvI~IaHrl~ti~~~DrI~Vl~~G~ive~G~~~eLl~~~~g~f~~l~~~~~ 1074 (1082)
|||+||||++||.|||||+|||+|+|+|+|+|++|++++++.|++++.+..
T Consensus 1326 TVltIAHRl~TVmd~DrVlVld~G~v~EfdsP~~Ll~~~~S~f~~~l~~~~ 1376 (1381)
T KOG0054|consen 1326 TVLTIAHRLNTVMDSDRVLVLDAGRVVEFDSPAELLSDKDSLFSSLLKEAA 1376 (1381)
T ss_pred eEEEEeeccchhhhcCeEEEeeCCeEeecCChHHHHhCCcchHHHHHHHHH
Confidence 999999999999999999999999999999999999989999987776543
|
|
| >PTZ00265 multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-159 Score=1549.04 Aligned_cols=1067 Identities=32% Similarity=0.548 Sum_probs=895.3
Q ss_pred chHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhc
Q 001411 2 QTGHALRYLSQFFVGFAVGFTSVWQLTLLTLAVVPLIAVAGGAYTITMSTLSEKGEAAYGEAGKVAEEIISQVRAVYAFV 81 (1082)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~ 81 (1082)
+++.++..++.++++++++|+++|.|++++++++|+++++..++.+++++..++.++..++..+.+.|.++|+++||+|+
T Consensus 174 ~~~~~~~~~~~~i~~~i~~~~~sw~Lalv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tVka~~ 253 (1466)
T PTZ00265 174 KFITIFTYASAFLGLYIWSLFKNARLTLCITCVFPLIYICGVICNKKVKINKKTSLLYNNNTMSIIEEALVGIRTVVSYC 253 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHhc
Confidence 35677888889999999999999999999999999999999999999988888888888999999999999999999999
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--------CCChHHHHHHHHHHHH
Q 001411 82 GEAKAIESYSHSLKEALKQGKKSGVAKGIGVGLTYGLLFCAWALLLWYAGILVRHG--------DTNGGKAFTTIINVIF 153 (1082)
Q Consensus 82 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~--------~l~~g~~~~~~~~~~~ 153 (1082)
.|+.+.++|.+...+..+...+.....++..++..++.++.+++++|+|++++.+| .+++|.+++++++.+.
T Consensus 254 ~e~~~~~~f~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~l~~~~G~~lv~~g~~~~~~~~~~t~g~v~~~~~~~l~ 333 (1466)
T PTZ00265 254 GEKTILKKFNLSEKLYSKYILKANFMESLHIGMINGFILASYAFGFWYGTRIIISDLSNQQPNNDFHGGSVISILLGVLI 333 (1466)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccccchhHHHHHHHHHHH
Confidence 99999999999998888888888888888888888888888999999999999975 5788988887776666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCCCCcEEEEEEEEECCCCC-CccccceeEEEeC
Q 001411 154 SGFALGQAAPNLAAIAKGKAAAANIISIIKENSHSSERPGDDGITLPKLAGQIEFSEVCFAYPSRP-HMVFENLNFSVDA 232 (1082)
Q Consensus 154 ~~~~l~~~~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~-~~~l~~i~l~i~~ 232 (1082)
....+..+.+.+..++.+..|++|++++++.+++.+. ...+...+. .+.|+++||+|+|++++ .++|+|+||+|++
T Consensus 334 ~~~~l~~i~~~~~~~~~a~~a~~ri~~ii~~~~~~~~--~~~~~~~~~-~~~I~~~nVsf~Y~~~~~~~vL~~isl~i~~ 410 (1466)
T PTZ00265 334 SMFMLTIILPNITEYMKSLEATNSLYEIINRKPLVEN--NDDGKKLKD-IKKIQFKNVRFHYDTRKDVEIYKDLNFTLTE 410 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCC--CCCCccCCC-CCcEEEEEEEEEcCCCCCCceeccceEEEcC
Confidence 6666777888899999999999999999987654321 111111122 23799999999998643 3599999999999
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHhCCCCCCcEEEE-CCeeCCCCCHHHHhhhceEEccCCCcChhcHHHHHhcCCC-----
Q 001411 233 GKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILL-DGHDLKSLQLKWLREQMGLVSQEPALFATSIANNILLGKE----- 306 (1082)
Q Consensus 233 g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~-~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ti~~ni~~g~~----- 306 (1082)
||++||+||||||||||+++|+|+|+|++|+|.+ ||+++++++..++|++||||+|+|.||++||+|||.+|.+
T Consensus 411 Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~i~~g~~i~~~~~~~lr~~Ig~V~Q~~~LF~~TI~eNI~~g~~~~~~~ 490 (1466)
T PTZ00265 411 GKTYAFVGESGCGKSTILKLIERLYDPTEGDIIINDSHNLKDINLKWWRSKIGVVSQDPLLFSNSIKNNIKYSLYSLKDL 490 (1466)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhccCCCCeEEEeCCcchhhCCHHHHHHhccEecccccchhccHHHHHHhcCCCcccc
Confidence 9999999999999999999999999999999999 5799999999999999999999999999999999999742
Q ss_pred ----------------------------------------------------CCCHHHHHHHHHHhchHHHHhcCCCCcc
Q 001411 307 ----------------------------------------------------DASMDRVIEAAKAANAHSFVEGLPDGYQ 334 (1082)
Q Consensus 307 ----------------------------------------------------~~~~~~~~~~~~~~~~~~~i~~lp~g~~ 334 (1082)
..+++++.++|+.+++++++.++|+||+
T Consensus 491 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~a~~~~~l~~~i~~lp~g~d 570 (1466)
T PTZ00265 491 EALSNYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSNTTDSNELIEMRKNYQTIKDSEVVDVSKKVLIHDFVSALPDKYE 570 (1466)
T ss_pred chhccccccccccccccccccccccccccchhhhcccccchhhhhhcccccccCCHHHHHHHHHHhCcHHHHHhCccccC
Confidence 1356789999999999999999999999
Q ss_pred ccccCCCCCCChHHHHHHHHHHhcccCCCeeEEeCcccCCCHHHHHHHHHHHHHHc--CCCeEEEEccCccccccCCEEE
Q 001411 335 TQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIM--SNRTTIVVAHRLSTVRDVDTIM 412 (1082)
Q Consensus 335 t~~g~~g~~LSgGqkqri~lARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~--~~~t~i~vtH~~~~~~~~d~i~ 412 (1082)
|.+|++|.+|||||||||+|||||+++|+|||||||||+||+++++.+++.|.++. +++|+|+||||+++++.||+|+
T Consensus 571 T~vg~~g~~LSGGQkQRiaIARAll~~P~ILlLDEpTSaLD~~se~~i~~~L~~~~~~~g~TvIiIsHrls~i~~aD~Ii 650 (1466)
T PTZ00265 571 TLVGSNASKLSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYLVQKTINNLKGNENRITIIIAHRLSTIRYANTIF 650 (1466)
T ss_pred ceeCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHhhcCCCEEEEEeCCHHHHHhCCEEE
Confidence 99999999999999999999999999999999999999999999999999999885 4799999999999999999999
Q ss_pred EEeCC-----------------------------------------------EEEEecCchhhhh-cCchhHHHHHhhhc
Q 001411 413 VLKNG-----------------------------------------------QVVESGTHVDLIS-KGGEYAALVNLQSS 444 (1082)
Q Consensus 413 ~l~~G-----------------------------------------------~i~~~g~~~~l~~-~~~~~~~~~~~~~~ 444 (1082)
+|++| +|+|+|+|+||++ .+|.|+.++..|..
T Consensus 651 vl~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ive~Gth~~L~~~~~g~y~~l~~~q~~ 730 (1466)
T PTZ00265 651 VLSNRERGSTVDVDIIGEDPTKDNKENNNKNNKDDNNNNNNNNNNKINNAGSYIIEQGTHDALMKNKNGIYYTMINNQKV 730 (1466)
T ss_pred EEeCCccccccccccccccccccccccccccccccccccccccccccccCCceeEeeCCHHHHHhccCCcHHHHHhhhcc
Confidence 99986 5999999999998 69999999977643
Q ss_pred cccCC--C--Cccc--CCCC-CCCC-CC--CCCC----CCcc--c--c-hhhhhhhhhhhccC-C-----C---CCC-Cc
Q 001411 445 EHLSN--P--SSIC--YSGS-SRYS-SF--RDFP----SSRR--Y--D-VEFESSKRRELQSS-D-----Q---SFA-PS 495 (1082)
Q Consensus 445 ~~~~~--~--~~~~--~~~~-~~~~-~~--~~~~----~~~~--~--~-~~~~~~~~~~~~~~-~-----~---~~~-~~ 495 (1082)
..... . .... .... .... .. .... .... . . .........+.... . . ... ..
T Consensus 731 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 810 (1466)
T PTZ00265 731 SSKKSSNNDNDKDSDMKSSAYKDSERGYDPDEMNGNSKHENESASNKKSCKMSDENASENNAGGKLPFLRNLFKRKPKAP 810 (1466)
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhccccchhhhhccccccccc
Confidence 32110 0 0000 0000 0000 00 0000 0000 0 0 00000000000000 0 0 001 11
Q ss_pred hhHHHHHHHhcchhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCchhhHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001411 496 PSIWELLKLNAAEWPYAVLGSVGAILAGMEAPLFALGITHILTAFYSPHDSQIKRVVDQVALIFVGLAVVTIPVYLLQHY 575 (1082)
Q Consensus 496 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 575 (1082)
..+.++++..+++++.++++++++++.+...|++++.++.++..++.. .........|.+++++++++..++.+++.|
T Consensus 811 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~~~~~~~~~l~~~~~~i~~~~~~~l~~~ 888 (1466)
T PTZ00265 811 NNLRIVYREIFSYKKDVTIIALSILVAGGLYPVFALLYAKYVSTLFDF--ANLEANSNKYSLYILVIAIAMFISETLKNY 888 (1466)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 133444555555666677788888888999999999999998876632 112223446777788888888999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCccccccCCChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001411 576 FYTLMGEHLTARVRLSMFSAILSNEIGWFDLDENNTGLLISTLAADATLVRSALADRLSIIVQNVALTVTAFVIAFILSW 655 (1082)
Q Consensus 576 ~~~~~~~~~~~~l~~~l~~~~l~~~~~ffd~~~~~~G~il~r~s~D~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 655 (1082)
+..+++.++..++|.++|++++++|++|||.+++++|++++|+++|++.++..+...+..++..++.++++++++++++|
T Consensus 889 ~~~~~~~~~~~~lR~~lf~~ll~~~~~~fd~~~~~~G~l~srl~~Dv~~l~~~~~~~l~~~~~~i~~~i~~~~~~~~~~~ 968 (1466)
T PTZ00265 889 YNNVIGEKVEKTMKRRLFENILYQEISFFDQDKHAPGLLSAHINRDVHLLKTGLVNNIVIFTHFIVLFLVSMVMSFYFCP 968 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999977799999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHH--H-------------HHHHHHHHHHHHHHHHccHHHHHHcCcHHHHHHHH
Q 001411 656 RLAAVVAASLPLLIGAFVAEQLFLKGFGG--D-------------YNRAYSRATSVAREAIANIRTVAAYGIEKRISIQF 720 (1082)
Q Consensus 656 ~l~~~~l~~~p~~~~~~~~~~~~~~~~~~--~-------------~~~~~~~~~~~~~e~l~g~~tIra~~~~~~~~~~~ 720 (1082)
.+++++++++|++...+....+....... . .++...+....+.|++.|+++||+|+.|+++.++|
T Consensus 969 ~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tVka~~~e~~~~~~~ 1048 (1466)
T PTZ00265 969 IVAAVLTGTYFIFMRVFAIRARLTANKDVEKKEINQPGTVFAYNSDDEIFKDPSFLIQEAFYNMNTVIIYGLEDYFCNLI 1048 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccchhhhHHHHHHHHHHHHHHHhcHHHHHHhcchHHHHHHH
Confidence 99887765555544333222121111000 0 12235566789999999999999999999999999
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001411 721 ASELSQPNKQALLRGHISGFGYGVSQLLSLCSYALGLWYASVLIKQKGSNFGDIMKSFMVLIITALAVAETLALAPDIVK 800 (1082)
Q Consensus 721 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 (1082)
.+..+...+...+.....++.+++.+.+.++..++.+|+|..++..|.+++|++++++.+..+...++..+...++++.+
T Consensus 1049 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~lv~~g~it~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~ 1128 (1466)
T PTZ00265 1049 EKAIDYSNKGQKRKTLVNSMLWGFSQSAQLFINSFAYWFGSFLIRRGTILVDDFMKSLFTFLFTGSYAGKLMSLKGDSEN 1128 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999988888889999999999999999999999999999999999999998877766666677888899999999
Q ss_pred HHHHHHHHHHhhcccccCCCCCCCCcc---cccccccEEEEeEEEECCCCCCcccccceeEEeeCCcEEEEEcCCCCCHH
Q 001411 801 GSQALGPVFGILYRKTAIQPDDPASKE---VTEIKGNIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKS 877 (1082)
Q Consensus 801 ~~~a~~ri~~~~~~~~~~~~~~~~~~~---~~~~~g~I~~~~Vs~~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKS 877 (1082)
+..+.+|++++++.+++.+..+..... ++...|.|+|+||+|+||++++.+||+|+||+|+|||++||||+||||||
T Consensus 1129 a~~a~~ri~~ll~~~~~~~~~~~~~~~~~~~~~~~g~I~f~nVsF~Y~~~~~~~vL~~lsl~i~~G~~vAIVG~SGsGKS 1208 (1466)
T PTZ00265 1129 AKLSFEKYYPLIIRKSNIDVRDNGGIRIKNKNDIKGKIEIMDVNFRYISRPNVPIYKDLTFSCDSKKTTAIVGETGSGKS 1208 (1466)
T ss_pred HHHHHHHHHHHHCCCCcCCCCCCcccccccCCCCCceEEEEEEEEECCCCCCCccccCeeEEEcCCCEEEEECCCCCCHH
Confidence 999999999999876543221111111 12346789999999999876667899999999999999999999999999
Q ss_pred HHHHHHhccccC------------------------------------------------------CccEEEECCccCCC
Q 001411 878 TVISLVMRFYDP------------------------------------------------------ISGTVLIDGYDIRT 903 (1082)
Q Consensus 878 TL~~lL~rl~~p------------------------------------------------------~~G~I~idG~di~~ 903 (1082)
||+++|+|||+| ++|+|+|||+||++
T Consensus 1209 Tl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~~ 1288 (1466)
T PTZ00265 1209 TVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQDYQGDEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICD 1288 (1466)
T ss_pred HHHHHHHHhCCCccccccccccccccccccccccccccccccccccccccccccccccccccccCCCCCeEEECCEEHHh
Confidence 999999999999 69999999999999
Q ss_pred CCHHHHhcceEEEcccCccccccHHHHhccCCCCCCHHHHHHHHHHhcHHHHHhhCcccccccccCCCCCCChhHHHHHH
Q 001411 904 LNLRSLRRKIGLVQQEPALFSTTIYENIKYGNEDASEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVA 983 (1082)
Q Consensus 904 i~~~~lR~~i~~VpQdp~Lf~gTIreNl~~~~~~~~d~ei~~al~~a~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrla 983 (1082)
+++++||++|+||||||+||+|||||||.+|.++++|+|+++|++.|++++||.+||+||||.|||+|.+||||||||||
T Consensus 1289 ~~~~~lR~~i~~V~Qep~LF~gTIreNI~~g~~~at~eeI~~A~k~A~l~~fI~~LP~GydT~VGe~G~~LSGGQkQRIa 1368 (1466)
T PTZ00265 1289 YNLKDLRNLFSIVSQEPMLFNMSIYENIKFGKEDATREDVKRACKFAAIDEFIESLPNKYDTNVGPYGKSLSGGQKQRIA 1368 (1466)
T ss_pred CCHHHHHhhccEeCCCCccccccHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCccccCCccCCCCCcCCHHHHHHHH
Confidence 99999999999999999999999999999998999999999999999999999999999999999999999999999999
Q ss_pred HHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHhc--CCceEEEEecCchhhhccCEEEEEeC----CEE-EEecChH
Q 001411 984 IARAILKNPSILLLDEATSALDTASENLIQEALDKLM--EGRTTIMVAHRLSTIRNADKIAVLQQ----GKV-AEIGSHE 1056 (1082)
Q Consensus 984 LARAlL~~~~ILlLDEaTS~LD~~te~~I~~~l~~~~--~~~TvI~IaHrl~ti~~~DrI~Vl~~----G~i-ve~G~~~ 1056 (1082)
|||||+|+|+|||||||||+||++||+.|+++|++.. +++|+|+||||++++++||+|+||++ |++ +|+|+|+
T Consensus 1369 IARALlr~p~ILLLDEaTSaLD~~sE~~I~~~L~~~~~~~~~TvIiIaHRlsti~~aD~Ivvl~~~~~~G~iv~e~Gth~ 1448 (1466)
T PTZ00265 1369 IARALLREPKILLLDEATSSLDSNSEKLIEKTIVDIKDKADKTIITIAHRIASIKRSDKIVVFNNPDRTGSFVQAHGTHE 1448 (1466)
T ss_pred HHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHhccCCCEEEEEechHHHHHhCCEEEEEeCCCCCCCEEEEecCHH
Confidence 9999999999999999999999999999999999874 68999999999999999999999999 995 5999999
Q ss_pred HHhhhccchHHHHHHHh
Q 001411 1057 QLLRKENGIYKQLIRLQ 1073 (1082)
Q Consensus 1057 eLl~~~~g~f~~l~~~~ 1073 (1082)
||+++++|.|++||+.|
T Consensus 1449 eLl~~~~g~Y~~l~~~~ 1465 (1466)
T PTZ00265 1449 ELLSVQDGVYKKYVKLA 1465 (1466)
T ss_pred HHHhcCCChHHHHHhhc
Confidence 99975589999999876
|
|
| >PLN03130 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-155 Score=1526.77 Aligned_cols=1002 Identities=21% Similarity=0.282 Sum_probs=773.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001411 37 LIAVAGGAYTITMSTLSEKGEAAYGEAGKVAEEIISQVRAVYAFVGEAKAIESYSHSLKEALKQGKKSGVAKGIGVGLTY 116 (1082)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (1082)
+++++..++.+++++..++.++..+++.+.+.|.++||++||+|+||+.+.+++.+.++++.+..++.....++...+..
T Consensus 452 l~~~l~~~~~~~~~~~~~~~~~~~d~r~~~~~E~L~gi~~IK~~~~E~~~~~~i~~~r~~e~~~~~~~~~~~~~~~~~~~ 531 (1622)
T PLN03130 452 LMFPIQTFIISKMQKLTKEGLQRTDKRIGLMNEVLAAMDTVKCYAWENSFQSKVQTVRDDELSWFRKAQLLSAFNSFILN 531 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445566778888888889999999999999999999999999999999999999999988887777666555443332
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCC
Q 001411 117 GLLFCAWALLLWYAGILVRHGDTNGGKAFTTIINVIFSGFALGQAAPNLAAIAKGKAAAANIISIIKENSHSSERPGDDG 196 (1082)
Q Consensus 117 ~~~~~~~~~~~~~g~~~v~~~~l~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~ 196 (1082)
... ..+.++++|+|++.+|.+|+|.+|+++..+.....|+..++..+..+.+++++++||.++++.++....+ ..
T Consensus 532 ~~~--~~v~~~~fg~~~~~~g~Lt~g~vf~~l~l~~~l~~pl~~l~~~i~~~~~a~~s~~RI~~~L~~~e~~~~~-~~-- 606 (1622)
T PLN03130 532 SIP--VLVTVVSFGVFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNLITQAVNANVSLKRLEELLLAEERVLLP-NP-- 606 (1622)
T ss_pred HHH--HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccccccc-CC--
Confidence 222 1345567899999999999999998877666667888899999999999999999999999654321111 00
Q ss_pred CCCCCCCCcEEEEEEEEECCCC-CCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHHhCCCCCC-cEEEECCeeCCCC
Q 001411 197 ITLPKLAGQIEFSEVCFAYPSR-PHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTS-GKILLDGHDLKSL 274 (1082)
Q Consensus 197 ~~~~~~~~~i~~~~v~~~y~~~-~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~-G~i~~~g~~~~~~ 274 (1082)
......+.|+++|++|+|+++ ++++|+|+||++++||+++|+||||||||||+++|+|+++|++ |+|.+.
T Consensus 607 -~~~~~~~~I~~~nvsf~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~GG~I~l~------- 678 (1622)
T PLN03130 607 -PLEPGLPAISIKNGYFSWDSKAERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDASVVIR------- 678 (1622)
T ss_pred -cccCCCCceEEEeeEEEccCCCCCceeeceeEEecCCCEEEEECCCCCCHHHHHHHHHHhhccCCCceEEEc-------
Confidence 001112469999999999753 2459999999999999999999999999999999999999999 999864
Q ss_pred CHHHHhhhceEEccCCCcChhcHHHHHhcCCCCCCHHHHHHHHHHhchHHHHhcCCCCccccccCCCCCCChHHHHHHHH
Q 001411 275 QLKWLREQMGLVSQEPALFATSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAI 354 (1082)
Q Consensus 275 ~~~~~~~~i~~v~Q~~~l~~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~lp~g~~t~~g~~g~~LSgGqkqri~l 354 (1082)
++|+||+|+||||++||||||+||.|. +++++.++++.|+++++++.||+|++|.+||+|.+|||||||||+|
T Consensus 679 ------~~Iayv~Q~p~LfngTIreNI~fg~~~-d~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~G~~LSGGQKQRIaL 751 (1622)
T PLN03130 679 ------GTVAYVPQVSWIFNATVRDNILFGSPF-DPERYERAIDVTALQHDLDLLPGGDLTEIGERGVNISGGQKQRVSM 751 (1622)
T ss_pred ------CeEEEEcCccccCCCCHHHHHhCCCcc-cHHHHHHHHHHhCcHHHHHhCCCcccccccCCCCCCCHHHHHHHHH
Confidence 579999999999999999999999885 6889999999999999999999999999999999999999999999
Q ss_pred HHhcccCCCeeEEeCcccCCCHHHHHHH-HHHHHHHcCCCeEEEEccCccccccCCEEEEEeCCEEEEecCchhhhhcCc
Q 001411 355 ARAVLRNPKILLLDEATSALDAESELIV-QRALEKIMSNRTTIVVAHRLSTVRDVDTIMVLKNGQVVESGTHVDLISKGG 433 (1082)
Q Consensus 355 ARal~~~~~illlDEpts~LD~~~~~~i-~~~l~~~~~~~t~i~vtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~ 433 (1082)
|||+|++|+||||||||||||+++++.+ .+++.+..+++|+|+|||+++.++.||+|++|++|+++++|+|+|++++++
T Consensus 752 ARAly~~~~IlLLDEptSALD~~~~~~I~~~~l~~~l~~kTvIlVTH~l~~l~~aD~Ii~L~~G~i~e~Gt~~eL~~~~~ 831 (1622)
T PLN03130 752 ARAVYSNSDVYIFDDPLSALDAHVGRQVFDKCIKDELRGKTRVLVTNQLHFLSQVDRIILVHEGMIKEEGTYEELSNNGP 831 (1622)
T ss_pred HHHHhCCCCEEEECCCccccCHHHHHHHHHHHhhHHhcCCEEEEEECCHhHHHhCCEEEEEeCCEEEEeCCHHHHHhcch
Confidence 9999999999999999999999998876 466777778899999999999999999999999999999999999999888
Q ss_pred hhHHHHHhhhccccCCCCcccCC-CCCCCCCCCC--CCC-Ccccc-hhhh---hhhhhhhccCCCCCCCchhHHHHHHHh
Q 001411 434 EYAALVNLQSSEHLSNPSSICYS-GSSRYSSFRD--FPS-SRRYD-VEFE---SSKRRELQSSDQSFAPSPSIWELLKLN 505 (1082)
Q Consensus 434 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~--~~~-~~~~~-~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 505 (1082)
.|.+++..+.............. .......... ... ..... .... .....+.++.+........++++++..
T Consensus 832 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~v~~~vy~~Y~~~~ 911 (1622)
T PLN03130 832 LFQKLMENAGKMEEYVEENGEEEDDQTSSKPVANGNANNLKKDSSSKKKSKEGKSVLIKQEERETGVVSWKVLERYKNAL 911 (1622)
T ss_pred hHHHHHHhcccccccccccccccccccccccccccccccccccccccccccccchhhhhHHHHhcCccCHHHHHHHHHHh
Confidence 89888765432111000000000 0000000000 000 00000 0000 000000011111111111122222211
Q ss_pred cchhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCchhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001411 506 AAEWPYAVLGSVGAILAGMEAPLFALGITHILTAFYSPHDSQIKRVVDQVALIFVGLAVVTIPVYLLQHYFYTLMGEHLT 585 (1082)
Q Consensus 506 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 585 (1082)
+.+..+.+.+++.++ ...+ ..+...|..+|.............|+++|++++++..++.+++.+++.+.+.+++
T Consensus 912 -g~~~~~~~~~~~~~~----~~~~-~~~~~~wl~~w~~~~~~~~~~~~~~~~i~~~l~~~~~i~~~~~~~~~~~~~~~~~ 985 (1622)
T PLN03130 912 -GGAWVVMILFLCYVL----TEVF-RVSSSTWLSEWTDQGTPKTHGPLFYNLIYALLSFGQVLVTLLNSYWLIMSSLYAA 985 (1622)
T ss_pred -ccHHHHHHHHHHHHH----HHHH-HHHHHHHHHHHHhccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111111111111111 1111 1234455555543211111223457778888999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCccccccCCChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001411 586 ARVRLSMFSAILSNEIGWFDLDENNTGLLISTLAADATLVRSALADRLSIIVQNVALTVTAFVIAFILSWRLAAVVAASL 665 (1082)
Q Consensus 586 ~~l~~~l~~~~l~~~~~ffd~~~~~~G~il~r~s~D~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~ 665 (1082)
.++|.+++++++++|++|||. +|+|+++|||++|++.+|..++..+..++..++.+++.++++++.+|.. +++++
T Consensus 986 ~~L~~~l~~~ll~~p~~ffd~--~~~G~IlnR~s~Di~~id~~l~~~~~~~~~~~~~~i~~~i~i~~~~~~~---~~~~~ 1060 (1622)
T PLN03130 986 KRLHDAMLGSILRAPMSFFHT--NPLGRIINRFAKDLGDIDRNVAVFVNMFLGQIFQLLSTFVLIGIVSTIS---LWAIM 1060 (1622)
T ss_pred HHHHHHHHHHHHcCCHHHhcc--CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHH
Confidence 999999999999999999985 8999999999999999999999999999999998888888887777632 33445
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHH----HHHHHHHHHHHccHHHHHHcCcHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 001411 666 PLLIGAFVAEQLFLKGFGGDYNRAY----SRATSVAREAIANIRTVAAYGIEKRISIQFASELSQPNKQALLRGHISGFG 741 (1082)
Q Consensus 666 p~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~e~l~g~~tIra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 741 (1082)
|+.++++++.. +..+..++.++.. +...+++.|+++|+.|||+|+++++|.+++.+..+...+..+.......|.
T Consensus 1061 pl~~~~~~~~~-~~~~~~r~~~r~~~~~~s~~~~~~~Etl~Gi~tIraf~~~~~f~~~~~~~~~~~~~~~~~~~~~~~wl 1139 (1622)
T PLN03130 1061 PLLVLFYGAYL-YYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMAEINGRSMDNNIRFTLVNMSSNRWL 1139 (1622)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHhcchHHHHHHHHhCCHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55444333333 3334445555433 445689999999999999999999999999988888887766655555454
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCC-CC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 001411 742 YGVSQLLSLCSYALGLWYASVLIKQKG-SN-----FGDIMKSFMVLIITALAVAETLALAPDIVKGSQALGPVFGILYRK 815 (1082)
Q Consensus 742 ~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~~~~~ 815 (1082)
.....++..+ +..+.+...+..+. .. .+.+...+.+.......+......+..++..+.+++|+.++++.+
T Consensus 1140 ~~~l~~~~~~---~i~~~~~~~v~~~~~~~~~~~~~~~~G~~ls~~~~~~~~l~~l~~~~~~~e~~~~sveRi~e~~~~~ 1216 (1622)
T PLN03130 1140 AIRLETLGGL---MIWLTASFAVMQNGRAENQAAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGTYIDLP 1216 (1622)
T ss_pred HHHHHHHHHH---HHHHHHHHHHHcccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 3333332221 22222222233221 11 122222233333444555666667778899999999999998766
Q ss_pred ccCCCCCC--CCcccccccccEEEEeEEEECCCCCCcccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccE
Q 001411 816 TAIQPDDP--ASKEVTEIKGNIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGT 893 (1082)
Q Consensus 816 ~~~~~~~~--~~~~~~~~~g~I~~~~Vs~~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~ 893 (1082)
+|.+...+ ...+.||.+|.|+|+||+|+|+++ .++||+|+||+|+||||||||||||||||||+++|+|+|+|++|+
T Consensus 1217 ~E~~~~~~~~~~~~~wp~~g~I~f~nVsf~Y~~~-~~~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~p~~G~ 1295 (1622)
T PLN03130 1217 SEAPLVIENNRPPPGWPSSGSIKFEDVVLRYRPE-LPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELERGR 1295 (1622)
T ss_pred CcccccccCCCCCCCCCCCCcEEEEEEEEEeCCC-CCceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcCCCCCce
Confidence 55432111 112235778999999999999632 347999999999999999999999999999999999999999999
Q ss_pred EEECCccCCCCCHHHHhcceEEEcccCccccccHHHHhccCCCCCCHHHHHHHHHHhcHHHHHhhCcccccccccCCCCC
Q 001411 894 VLIDGYDIRTLNLRSLRRKIGLVQQEPALFSTTIYENIKYGNEDASEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQ 973 (1082)
Q Consensus 894 I~idG~di~~i~~~~lR~~i~~VpQdp~Lf~gTIreNl~~~~~~~~d~ei~~al~~a~l~~~i~~lp~gldt~v~e~G~~ 973 (1082)
|+|||+||+++++++||++|++|||||+||+||||+||+|+. +++|+|+|+||++++++++|.++|+||||+|||+|.+
T Consensus 1296 I~IDG~dI~~i~l~~LR~~IsiVpQdp~LF~GTIreNLd~~~-~~tdeei~~Al~~a~l~~~I~~lp~GLdt~Vge~G~n 1374 (1622)
T PLN03130 1296 ILIDGCDISKFGLMDLRKVLGIIPQAPVLFSGTVRFNLDPFN-EHNDADLWESLERAHLKDVIRRNSLGLDAEVSEAGEN 1374 (1622)
T ss_pred EEECCEecccCCHHHHHhccEEECCCCccccccHHHHhCcCC-CCCHHHHHHHHHHcCcHHHHHhCccccCccccCCCCC
Confidence 999999999999999999999999999999999999999975 6899999999999999999999999999999999999
Q ss_pred CChhHHHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhccCEEEEEeCCEEEEec
Q 001411 974 LSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLMEGRTTIMVAHRLSTIRNADKIAVLQQGKVAEIG 1053 (1082)
Q Consensus 974 LSgGQrQrlaLARAlL~~~~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~~DrI~Vl~~G~ive~G 1053 (1082)
|||||||||||||||||+|+|||||||||+||.+||+.||++|++.+++||+|+||||++|+.+||||+|||+|+|+|+|
T Consensus 1375 LSgGQrQrlaLARALLr~p~ILILDEATSaLD~~Te~~Iq~~I~~~~~~~TvI~IAHRL~tI~~~DrIlVLd~G~IvE~G 1454 (1622)
T PLN03130 1375 FSVGQRQLLSLARALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILVLDAGRVVEFD 1454 (1622)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEeCChHHHHhCCEEEEEECCEEEEeC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHhhhccchHHHHHHHhhc
Q 001411 1054 SHEQLLRKENGIYKQLIRLQQD 1075 (1082)
Q Consensus 1054 ~~~eLl~~~~g~f~~l~~~~~~ 1075 (1082)
+|+||+++++|.|++|++.+..
T Consensus 1455 t~~eLl~~~~g~f~~L~~~~~~ 1476 (1622)
T PLN03130 1455 TPENLLSNEGSAFSKMVQSTGA 1476 (1622)
T ss_pred CHHHHHhCCCCHHHHHHHHcCh
Confidence 9999998668999999987654
|
|
| >PLN03232 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-154 Score=1514.77 Aligned_cols=999 Identities=20% Similarity=0.273 Sum_probs=771.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001411 41 AGGAYTITMSTLSEKGEAAYGEAGKVAEEIISQVRAVYAFVGEAKAIESYSHSLKEALKQGKKSGVAKGIGVGLTYGLLF 120 (1082)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (1082)
+..++.+++++..++.++..+++.+.+.|.++||++||+|+||+.+.+++++.++++.+...+.....++...+.....
T Consensus 456 l~~~~~~~~~~~~~~~~~~~d~r~~~~~E~l~gi~~IK~~~~e~~~~~~~~~~r~~e~~~~~~~~~~~~~~~~~~~~~~- 534 (1495)
T PLN03232 456 LQTLIVRKMRKLTKEGLQWTDKRVGIINEILASMDTVKCYAWEKSFESRIQGIRNEELSWFRKAQLLSAFNSFILNSIP- 534 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 4556778888888999999999999999999999999999999999999999999998888877766655433322222
Q ss_pred HHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCC
Q 001411 121 CAWALLLWYAGILVRHGDTNGGKAFTTIINVIFSGFALGQAAPNLAAIAKGKAAAANIISIIKENSHSSERPGDDGITLP 200 (1082)
Q Consensus 121 ~~~~~~~~~g~~~v~~~~l~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~~ 200 (1082)
..+.++++|++++.+|.+|+|.+|+++..+.....|+..++..+..+.++++|++|+.++++.+++.... .. ...
T Consensus 535 -~~~~~~~fg~~~v~~~~lt~g~vf~~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~~L~~~~~~~~~-~~---~~~ 609 (1495)
T PLN03232 535 -VVVTLVSFGVFVLLGGDLTPARAFTSLSLFAVLRSPLNMLPNLLSQVVNANVSLQRIEELLLSEERILAQ-NP---PLQ 609 (1495)
T ss_pred -HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccccccc-cC---CcC
Confidence 2233467899999999999999999877666667888899999999999999999999999755432111 00 011
Q ss_pred CCCCcEEEEEEEEECCCC-CCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHHhCCCCCCcEEEECCeeCCCCCHHHH
Q 001411 201 KLAGQIEFSEVCFAYPSR-PHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWL 279 (1082)
Q Consensus 201 ~~~~~i~~~~v~~~y~~~-~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~ 279 (1082)
...+.|+++|++|+|+++ ++++|+|+||++++||+++|+||||||||||+++|+|+++|++|.+. .+
T Consensus 610 ~~~~~I~~~~vsF~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~G~i~------------~~ 677 (1495)
T PLN03232 610 PGAPAISIKNGYFSWDSKTSKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETSSV------------VI 677 (1495)
T ss_pred CCCCcEEEEeeEEEcCCCCCCceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCcccCCCEE------------Ee
Confidence 123469999999999753 34599999999999999999999999999999999999999998763 24
Q ss_pred hhhceEEccCCCcChhcHHHHHhcCCCCCCHHHHHHHHHHhchHHHHhcCCCCccccccCCCCCCChHHHHHHHHHHhcc
Q 001411 280 REQMGLVSQEPALFATSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVL 359 (1082)
Q Consensus 280 ~~~i~~v~Q~~~l~~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~lp~g~~t~~g~~g~~LSgGqkqri~lARal~ 359 (1082)
|++|+||+|+||||++||||||+||.+ .+++++.++++.|+++++++.||+||+|.+||+|.+|||||||||+||||+|
T Consensus 678 ~~~Iayv~Q~p~Lf~gTIreNI~fg~~-~~~e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly 756 (1495)
T PLN03232 678 RGSVAYVPQVSWIFNATVRENILFGSD-FESERYWRAIDVTALQHDLDLLPGRDLTEIGERGVNISGGQKQRVSMARAVY 756 (1495)
T ss_pred cCcEEEEcCccccccccHHHHhhcCCc-cCHHHHHHHHHHhCCHHHHHhCCCCCCceecCCCcccCHHHHHHHHHHHHHh
Confidence 678999999999999999999999986 5788999999999999999999999999999999999999999999999999
Q ss_pred cCCCeeEEeCcccCCCHHHHHHHH-HHHHHHcCCCeEEEEccCccccccCCEEEEEeCCEEEEecCchhhhhcCchhHHH
Q 001411 360 RNPKILLLDEATSALDAESELIVQ-RALEKIMSNRTTIVVAHRLSTVRDVDTIMVLKNGQVVESGTHVDLISKGGEYAAL 438 (1082)
Q Consensus 360 ~~~~illlDEpts~LD~~~~~~i~-~~l~~~~~~~t~i~vtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~ 438 (1082)
++|+|+||||||||||+++++.+. +++....+++|+|+||||++.++.||+|++|++|+++++|+|+|++++++.|.++
T Consensus 757 ~~~~IlLLDEptSaLD~~t~~~I~~~~l~~~l~~kT~IlvTH~~~~l~~aD~Ii~L~~G~i~~~Gt~~eL~~~~~~~~~l 836 (1495)
T PLN03232 757 SNSDIYIFDDPLSALDAHVAHQVFDSCMKDELKGKTRVLVTNQLHFLPLMDRIILVSEGMIKEEGTFAELSKSGSLFKKL 836 (1495)
T ss_pred cCCCEEEEcCCccccCHHHHHHHHHHHhhhhhcCCEEEEEECChhhHHhCCEEEEEeCCEEEEecCHHHHHhcchhHHHH
Confidence 999999999999999999998775 4566667889999999999999999999999999999999999999999999988
Q ss_pred HHhhhccccCCCCcc-cCCCCC-CCCCCCCCCCCcccchhhhh--h-hhhhhccCCCCCCCchhHHHHHHHhcchhH-HH
Q 001411 439 VNLQSSEHLSNPSSI-CYSGSS-RYSSFRDFPSSRRYDVEFES--S-KRRELQSSDQSFAPSPSIWELLKLNAAEWP-YA 512 (1082)
Q Consensus 439 ~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 512 (1082)
+..+........... ...... ......+............. . ...++++ +..+...+..+..+.+...+ ++
T Consensus 837 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~---~~~g~v~~~vy~~y~~~~~~~~~ 913 (1495)
T PLN03232 837 MENAGKMDATQEVNTNDENILKLGPTVTIDVSERNLGSTKQGKRGRSVLVKQEE---RETGIISWNVLMRYNKAVGGLWV 913 (1495)
T ss_pred HHhcccccccccccccccccccccccccccccccccccccccccchhhhhhHHH---HhcCcccHHHHHHHHHHcCcHHH
Confidence 765432111100000 000000 00000000000000000000 0 0000011 11122222222222222111 11
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCchhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001411 513 VLGSVGAILAGMEAPLFALGITHILTAFYSPHDSQIKRVVDQVALIFVGLAVVTIPVYLLQHYFYTLMGEHLTARVRLSM 592 (1082)
Q Consensus 513 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l 592 (1082)
...++...+ ....+ ..+..+|..+|.............|+++|++++++..++.+++.+++.+.+.+++.++|.++
T Consensus 914 ~~~~~~~~~---~~~~~-~~~~~~wl~~w~~~~~~~~~~~~~~l~~y~~l~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l 989 (1495)
T PLN03232 914 VMILLVCYL---TTEVL-RVSSSTWLSIWTDQSTPKSYSPGFYIVVYALLGFGQVAVTFTNSFWLISSSLHAAKRLHDAM 989 (1495)
T ss_pred HHHHHHHHH---HHHHH-HHHHHHHHHHHhcccCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111111111 11111 22455666666542211111235688899999999999999999999999999999999999
Q ss_pred HHHHHhCCCccccccCCChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001411 593 FSAILSNEIGWFDLDENNTGLLISTLAADATLVRSALADRLSIIVQNVALTVTAFVIAFILSWRLAAVVAASLPLLIGAF 672 (1082)
Q Consensus 593 ~~~~l~~~~~ffd~~~~~~G~il~r~s~D~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~p~~~~~~ 672 (1082)
+++++++|++|||. +++|+++|||++|++.+|..++..+..++..++.++++++++++.++.. +++++|+.+.++
T Consensus 990 ~~~ll~~p~~ff~~--~~~G~ilnr~s~Di~~id~~l~~~~~~~~~~~~~~i~~~i~~~~~~~~~---~~~~~~~~~~~~ 1064 (1495)
T PLN03232 990 LNSILRAPMLFFHT--NPTGRVINRFSKDIGDIDRNVANLMNMFMNQLWQLLSTFALIGTVSTIS---LWAIMPLLILFY 1064 (1495)
T ss_pred HHHHHcCCeeeeCc--CCchHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
Confidence 99999999999985 8999999999999999999999999999888888888777776666432 333445444433
Q ss_pred HHHHHHHhhHHHHHHHH----HHHHHHHHHHHHccHHHHHHcCcHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 001411 673 VAEQLFLKGFGGDYNRA----YSRATSVAREAIANIRTVAAYGIEKRISIQFASELSQPNKQALLRGHISGFGYGVSQLL 748 (1082)
Q Consensus 673 ~~~~~~~~~~~~~~~~~----~~~~~~~~~e~l~g~~tIra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 748 (1082)
+...+ ..+..++.++. .+...+++.|+++|+.|||+||.+++|.+++.+..+...+..+.......|.......+
T Consensus 1065 ~~~~~-~~~~~r~~~~~~~~~~s~~~~~~~E~l~G~~tIraf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~ 1143 (1495)
T PLN03232 1065 AAYLY-YQSTSREVRRLDSVTRSPIYAQFGEALNGLSSIRAYKAYDRMAKINGKSMDNNIRFTLANTSSNRWLTIRLETL 1143 (1495)
T ss_pred HHHHH-HHHHHHHHHHHHHHhcChHHHHHHHHhcChHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33332 33334444443 34556899999999999999999999999999888888877665544444433222222
Q ss_pred HHHHHHHHHHHHHHHHH-hCCC----CHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCC
Q 001411 749 SLCSYALGLWYASVLIK-QKGS----NFGD-IMKSFMVLIITALAVAETLALAPDIVKGSQALGPVFGILYRKTAIQPDD 822 (1082)
Q Consensus 749 ~~~~~~~~~~~~~~l~~-~~~~----~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~~~~~~~~~~~~ 822 (1082)
..++..+.+...+. .+.+ .+.. +..++.+......++......+..++.++.+++|+.++++.+++.+...
T Consensus 1144 ---~~~~~~~~~~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~eRi~e~~~~~~e~~~~~ 1220 (1495)
T PLN03232 1144 ---GGVMIWLTATFAVLRNGNAENQAGFASTMGLLLSYTLNITTLLSGVLRQASKAENSLNSVERVGNYIDLPSEATAII 1220 (1495)
T ss_pred ---HHHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccc
Confidence 12222222333333 2221 1111 1122333334445666777788899999999999999997765543211
Q ss_pred CC--CcccccccccEEEEeEEEECCCCCCcccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcc
Q 001411 823 PA--SKEVTEIKGNIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYD 900 (1082)
Q Consensus 823 ~~--~~~~~~~~g~I~~~~Vs~~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~d 900 (1082)
.. ..+.||.+|.|+|+||+|+|+++ .++||+|+||+|+||||||||||||||||||+++|+|+|+|++|+|.|||+|
T Consensus 1221 ~~~~~~~~~p~~g~I~f~nVsf~Y~~~-~~~vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl~~p~~G~I~IdG~d 1299 (1495)
T PLN03232 1221 ENNRPVSGWPSRGSIKFEDVHLRYRPG-LPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCD 1299 (1495)
T ss_pred cCCCCCCCCCCCCcEEEEEEEEEECCC-CCcccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCCceEEECCEE
Confidence 11 12235678899999999999632 3579999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHhcceEEEcccCccccccHHHHhccCCCCCCHHHHHHHHHHhcHHHHHhhCcccccccccCCCCCCChhHHH
Q 001411 901 IRTLNLRSLRRKIGLVQQEPALFSTTIYENIKYGNEDASEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQ 980 (1082)
Q Consensus 901 i~~i~~~~lR~~i~~VpQdp~Lf~gTIreNl~~~~~~~~d~ei~~al~~a~l~~~i~~lp~gldt~v~e~G~~LSgGQrQ 980 (1082)
|+++++++||++|++|||||+||+|||||||+|+. +++|+|+|+|+++++++++|+++|+||||+|||+|.+|||||||
T Consensus 1300 i~~i~~~~lR~~i~iVpQdp~LF~gTIr~NL~~~~-~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQ 1378 (1495)
T PLN03232 1300 VAKFGLTDLRRVLSIIPQSPVLFSGTVRFNIDPFS-EHNDADLWEALERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQ 1378 (1495)
T ss_pred hhhCCHHHHHhhcEEECCCCeeeCccHHHHcCCCC-CCCHHHHHHHHHHcCCHHHHHhCcCCCCceecCCCCCCCHHHHH
Confidence 99999999999999999999999999999999964 78999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhccCEEEEEeCCEEEEecChHHHhh
Q 001411 981 RVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLMEGRTTIMVAHRLSTIRNADKIAVLQQGKVAEIGSHEQLLR 1060 (1082)
Q Consensus 981 rlaLARAlL~~~~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~~DrI~Vl~~G~ive~G~~~eLl~ 1060 (1082)
||||||||+|+|+|||||||||+||++||+.||++|++.+++||+|+||||++|+.+||||+|||+|+|+|+|+|+||++
T Consensus 1379 rlaLARALLr~~~ILILDEATSaLD~~Te~~Iq~~L~~~~~~~TvI~IAHRl~ti~~~DrIlVL~~G~ivE~Gt~~eLl~ 1458 (1495)
T PLN03232 1379 LLSLARALLRRSKILVLDEATASVDVRTDSLIQRTIREEFKSCTMLVIAHRLNTIIDCDKILVLSSGQVLEYDSPQELLS 1458 (1495)
T ss_pred HHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred hccchHHHHHHHhhcc
Q 001411 1061 KENGIYKQLIRLQQDK 1076 (1082)
Q Consensus 1061 ~~~g~f~~l~~~~~~~ 1076 (1082)
+++|.|++|++.+...
T Consensus 1459 ~~~~~f~~l~~~~~~~ 1474 (1495)
T PLN03232 1459 RDTSAFFRMVHSTGPA 1474 (1495)
T ss_pred CCCCHHHHHHHHhChh
Confidence 6667999999887643
|
|
| >TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-149 Score=1476.82 Aligned_cols=1011 Identities=21% Similarity=0.292 Sum_probs=789.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001411 29 LLTLAVVPLIAVAGGAYTITMSTLSEKGEAAYGEAGKVAEEIISQVRAVYAFVGEAKAIESYSHSLKEALKQGKKSGVAK 108 (1082)
Q Consensus 29 l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (1082)
++.++++++++++..++.+.+++..++.++..+++.+.+.|.++||++||+++||+.+.+++++.++++.+..++.....
T Consensus 461 l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~r~~~~~E~l~~ik~IK~~~~e~~~~~~i~~~r~~e~~~~~~~~~~~ 540 (1522)
T TIGR00957 461 LAGVAVMVLMVPLNAVMAMKTKTYQVAHMKSKDNRIKLMNEILNGIKVLKLYAWELAFLDKVEGIRQEELKVLKKSAYLH 540 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445556666677778888999999999999999999999999999999999999999999999999988877766665
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHc--CCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 001411 109 GIGVGLTYGLLFCAWALLLWYAGILVRH--GDTNGGKAFTTIINVIFSGFALGQAAPNLAAIAKGKAAAANIISIIKENS 186 (1082)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~g~~~v~~--~~l~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~ri~~~l~~~~ 186 (1082)
.+......... ..+.++.++.|.+.. +.++++.+|+.+..+.....|+..++..+..+.++++|++||.++++.++
T Consensus 541 ~~~~~~~~~~~--~~~~~~~f~~~~~~~~~~~l~~~~~f~~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~~l~~~~ 618 (1522)
T TIGR00957 541 AVGTFTWVCTP--FLVALITFAVYVTVDENNILDAEKAFVSLALFNILRFPLNILPMVISSIVQASVSLKRLRIFLSHEE 618 (1522)
T ss_pred HHHHHHHHHHH--HHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcc
Confidence 44332222111 122233456676663 56899999888755555667899999999999999999999999997543
Q ss_pred CCCCCCCCCCCCCCCCCCcEEEEEEEEECCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHHhCCCCCCcEEEE
Q 001411 187 HSSERPGDDGITLPKLAGQIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILL 266 (1082)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~ 266 (1082)
+.+ .........+...+.|+++|++|+|++..+++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.+
T Consensus 619 ~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~isl~i~~G~~v~IvG~~GsGKSTLl~~l~g~~~~~~G~i~~ 697 (1522)
T TIGR00957 619 LEP-DSIERRTIKPGEGNSITVHNATFTWARDLPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHM 697 (1522)
T ss_pred ccc-ccccccccCCCCCCcEEEEEeEEEcCCCCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCccCCcEEEE
Confidence 321 1000000001112369999999999754456999999999999999999999999999999999999999999999
Q ss_pred CCeeCCCCCHHHHhhhceEEccCCCcChhcHHHHHhcCCCCCCHHHHHHHHHHhchHHHHhcCCCCccccccCCCCCCCh
Q 001411 267 DGHDLKSLQLKWLREQMGLVSQEPALFATSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSG 346 (1082)
Q Consensus 267 ~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~lp~g~~t~~g~~g~~LSg 346 (1082)
+| +|+||+|+||+|++||+|||.+|.+. +.+++.++++.+++.+++..+|+|++|.+|++|.+|||
T Consensus 698 ~g-------------~i~yv~Q~~~l~~~Ti~eNI~~g~~~-~~~~~~~~~~~~~l~~~l~~~~~g~~t~ig~~g~~LSG 763 (1522)
T TIGR00957 698 KG-------------SVAYVPQQAWIQNDSLRENILFGKAL-NEKYYQQVLEACALLPDLEILPSGDRTEIGEKGVNLSG 763 (1522)
T ss_pred CC-------------EEEEEcCCccccCCcHHHHhhcCCcc-CHHHHHHHHHHhCCHHHHHhcCCCCCceecCCCCCCCH
Confidence 87 49999999999999999999999764 45677788888888999999999999999999999999
Q ss_pred HHHHHHHHHHhcccCCCeeEEeCcccCCCHHHHHHHHHHHHH---HcCCCeEEEEccCccccccCCEEEEEeCCEEEEec
Q 001411 347 GQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEK---IMSNRTTIVVAHRLSTVRDVDTIMVLKNGQVVESG 423 (1082)
Q Consensus 347 Gqkqri~lARal~~~~~illlDEpts~LD~~~~~~i~~~l~~---~~~~~t~i~vtH~~~~~~~~d~i~~l~~G~i~~~g 423 (1082)
||||||+||||+|++|+|+|||||||+||+++++.+.+.+.+ +.+++|+|+|||+++.++.||+|++|++|++++.|
T Consensus 764 GQkqRiaLARAl~~~~~illLDEp~saLD~~~~~~i~~~l~~~~~~~~~~tvIlvTH~~~~l~~~D~ii~l~~G~i~~~g 843 (1522)
T TIGR00957 764 GQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFEHVIGPEGVLKNKTRILVTHGISYLPQVDVIIVMSGGKISEMG 843 (1522)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhhhhcCCEEEEEeCChhhhhhCCEEEEecCCeEEeeC
Confidence 999999999999999999999999999999999999988853 45689999999999999999999999999999999
Q ss_pred CchhhhhcCchhHHHHHhhhccccCC--CCc------ccCCCC---CC--------CCCCCC----CCCC--c--cc--c
Q 001411 424 THVDLISKGGEYAALVNLQSSEHLSN--PSS------ICYSGS---SR--------YSSFRD----FPSS--R--RY--D 474 (1082)
Q Consensus 424 ~~~~l~~~~~~~~~~~~~~~~~~~~~--~~~------~~~~~~---~~--------~~~~~~----~~~~--~--~~--~ 474 (1082)
+++++.++++.|.++...+..+...+ ... ...... .. .....+ .... . .. .
T Consensus 844 ~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 923 (1522)
T TIGR00957 844 SYQELLQRDGAFAEFLRTYAPDEQQGHLEDSWTALVSGEGKEAKLIENGMLVTDVVGKQLQRQLSASSSDSGDQSRHHGS 923 (1522)
T ss_pred CHHHHHhcchhHHHHHHhhccccccccccccccccccccccccccccccccccccccchhhhhccccccccccccccccc
Confidence 99999998888888876432211100 000 000000 00 000000 0000 0 00 0
Q ss_pred h-hhhhhhh----hhhccCCCCCCCchhHHHHHHHhcc-hhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCch--
Q 001411 475 V-EFESSKR----RELQSSDQSFAPSPSIWELLKLNAA-EWPYAVLGSVGAILAGMEAPLFALGITHILTAFYSPHDS-- 546 (1082)
Q Consensus 475 ~-~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 546 (1082)
. ....... ......+.+..+...+..+..+.+. ++...++.++...+ ......+..+|..+|.....
T Consensus 924 ~~~~~~~~~~~~~~~~~~~e~~~~g~v~~~~y~~Y~~~~g~~~~~~~~~~~~~-----~~~~~~~~~~~l~~w~~~~~~~ 998 (1522)
T TIGR00957 924 SAELQKAEAKEETWKLMEADKAQTGQVELSVYWDYMKAIGLFITFLSIFLFVC-----NHVSALASNYWLSLWTDDPMVN 998 (1522)
T ss_pred cccccccccccchhhhHHHHHHhcCcccHHHHHHHHHHcCHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHhcccccc
Confidence 0 0000000 0000000011111111111111111 11111111111111 11122334555555643211
Q ss_pred hhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccccccCCChhHHHHHHHhhHHHHH
Q 001411 547 QIKRVVDQVALIFVGLAVVTIPVYLLQHYFYTLMGEHLTARVRLSMFSAILSNEIGWFDLDENNTGLLISTLAADATLVR 626 (1082)
Q Consensus 547 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~l~~~~~ffd~~~~~~G~il~r~s~D~~~i~ 626 (1082)
........|.++|++++++..++.++..++..+.+.+++.++|.+++++++++|++|||. +++|+++|||++|++.+|
T Consensus 999 ~~~~~~~~~~~iy~~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ff~~--~~~G~ilnR~s~Di~~id 1076 (1522)
T TIGR00957 999 GTQNNTSLRLSVYGALGILQGFAVFGYSMAVSIGGIQASRVLHQDLLHNKLRSPMSFFER--TPSGNLVNRFSKELDTVD 1076 (1522)
T ss_pred CCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhHhcc--CChHHHHHHHHHHHHHHH
Confidence 011112356678888888888888888889999999999999999999999999999985 899999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH----HHHHHHHHHHHHc
Q 001411 627 SALADRLSIIVQNVALTVTAFVIAFILSWRLAAVVAASLPLLIGAFVAEQLFLKGFGGDYNRA----YSRATSVAREAIA 702 (1082)
Q Consensus 627 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~e~l~ 702 (1082)
..++..+..++..++.+++.++++++.+|++++++ +|+++++++ .++++.+..++.++. .+...+++.|+++
T Consensus 1077 ~~l~~~~~~~~~~~~~~i~~li~~~~~~~~~~~~~---~~~~~~~~~-~~~~~~~~~r~~~~~~~~~~s~l~~~~~E~l~ 1152 (1522)
T TIGR00957 1077 SMIPPVIKMFMGSLFNVIGALIVILLATPIAAVII---PPLGLLYFF-VQRFYVASSRQLKRLESVSRSPVYSHFNETLL 1152 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence 99999999999999999988888888777654333 333333333 334443444555543 3455699999999
Q ss_pred cHHHHHHcCcHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCCCHHHHHHHHHHH
Q 001411 703 NIRTVAAYGIEKRISIQFASELSQPNKQALLRGHISGFGYGVSQLLSLCSYALGLWYASVLIK-QKGSNFGDIMKSFMVL 781 (1082)
Q Consensus 703 g~~tIra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~ 781 (1082)
|+.|||+||++++|.+++.+..+..++..+.....+.|.....+++..+ +.++++...+. .+.++.|.+..++.+.
T Consensus 1153 Gi~tIraf~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~v~~~~~~~~g~l~~~l~~~ 1229 (1522)
T TIGR00957 1153 GVSVIRAFEEQERFIHQSDLKVDENQKAYYPSIVANRWLAVRLECVGNC---IVLFAALFAVISRHSLSAGLVGLSVSYS 1229 (1522)
T ss_pred CcHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 9999999999999999999999999999888777777766555554332 33334444443 5778999988888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCC--CCCCcccccccccEEEEeEEEECCCCCCcccccceeEE
Q 001411 782 IITALAVAETLALAPDIVKGSQALGPVFGILYRKTAIQPD--DPASKEVTEIKGNIELRNVSFKYPVRPDITIFENLNLK 859 (1082)
Q Consensus 782 ~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~~~~~~~~~~~--~~~~~~~~~~~g~I~~~~Vs~~Y~~~~~~~vL~~vsl~ 859 (1082)
.....++..+...+..+++++.+++|+.++++.+++.+.. ....++.||.+|.|+|+||+|+|+++ .++||+||||+
T Consensus 1230 ~~~~~~l~~l~~~~~~~e~~~~s~eRi~~~~~~~~e~~~~~~~~~~~~~wp~~g~I~f~nVsf~Y~~~-~~~vL~~is~~ 1308 (1522)
T TIGR00957 1230 LQVTFYLNWLVRMSSEMETNIVAVERLKEYSETEKEAPWQIQETAPPSGWPPRGRVEFRNYCLRYRED-LDLVLRHINVT 1308 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccccccCCCCCCCCCCCCcEEEEEEEEEeCCC-CcccccceeEE
Confidence 8888899999999999999999999999999766543211 11112235778999999999999743 24799999999
Q ss_pred eeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCccCCCCCHHHHhcceEEEcccCccccccHHHHhccCCCCCC
Q 001411 860 VSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRKIGLVQQEPALFSTTIYENIKYGNEDAS 939 (1082)
Q Consensus 860 I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR~~i~~VpQdp~Lf~gTIreNl~~~~~~~~ 939 (1082)
|+||||||||||||||||||+++|+|+|+|++|+|.|||+||+++++++||++|++|||||+||+||||+||+|. ++++
T Consensus 1309 I~~GekiaIVGrTGsGKSTL~~lL~rl~~~~~G~I~IdG~dI~~i~~~~LR~~i~iVpQdp~LF~gTIr~NLdp~-~~~s 1387 (1522)
T TIGR00957 1309 IHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGLNIAKIGLHDLRFKITIIPQDPVLFSGSLRMNLDPF-SQYS 1387 (1522)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCccCCCCeEEECCEEccccCHHHHHhcCeEECCCCcccCccHHHHcCcc-cCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999985 4799
Q ss_pred HHHHHHHHHHhcHHHHHhhCcccccccccCCCCCCChhHHHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHh
Q 001411 940 EIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKL 1019 (1082)
Q Consensus 940 d~ei~~al~~a~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlaLARAlL~~~~ILlLDEaTS~LD~~te~~I~~~l~~~ 1019 (1082)
|+|+|+|+++++++++|.++|+||||+|||+|.+|||||||||||||||||+|+|||||||||+||++||+.||++|++.
T Consensus 1388 deei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrl~LARALLr~~~ILiLDEaTSalD~~Te~~Iq~~l~~~ 1467 (1522)
T TIGR00957 1388 DEEVWWALELAHLKTFVSALPDKLDHECAEGGENLSVGQRQLVCLARALLRKTKILVLDEATAAVDLETDNLIQSTIRTQ 1467 (1522)
T ss_pred HHHHHHHHHHcCcHHHHhhCccCCCceecCCCCcCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCceEEEEecCchhhhccCEEEEEeCCEEEEecChHHHhhhccchHHHHHHHh
Q 001411 1020 MEGRTTIMVAHRLSTIRNADKIAVLQQGKVAEIGSHEQLLRKENGIYKQLIRLQ 1073 (1082)
Q Consensus 1020 ~~~~TvI~IaHrl~ti~~~DrI~Vl~~G~ive~G~~~eLl~~~~g~f~~l~~~~ 1073 (1082)
+++||||+||||++++.+||||+|||+|+|+|+|+|+||+++ +|.|++|++..
T Consensus 1468 ~~~~TvI~IAHRl~ti~~~DrIlVld~G~IvE~G~~~eLl~~-~~~f~~l~~~~ 1520 (1522)
T TIGR00957 1468 FEDCTVLTIAHRLNTIMDYTRVIVLDKGEVAEFGAPSNLLQQ-RGIFYSMAKDA 1520 (1522)
T ss_pred cCCCEEEEEecCHHHHHhCCEEEEEECCEEEEECCHHHHHhC-CCHHHHHHHHc
Confidence 999999999999999999999999999999999999999984 79999999864
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. |
| >PTZ00243 ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-144 Score=1418.47 Aligned_cols=1033 Identities=19% Similarity=0.253 Sum_probs=791.8
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHH
Q 001411 10 LSQFFVGFAVGFTSVWQLTLLTLAVVPLIAVAGGAYTITMSTLSEKGEAAYGEAGKVAEEIISQVRAVYAFVGEAKAIES 89 (1082)
Q Consensus 10 ~~~~~~~~~~~~~~~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~ 89 (1082)
.+.+++++++++.+..+.+++.++++++++.+..++.+++.+..++.++..+++.+.++|.++|||+||+++||+.+.++
T Consensus 371 Pl~li~~~~lL~~~lG~~al~gv~vl~v~~pl~~~~~k~~~~~~~~~~~~~D~Ri~~~~E~l~gIr~IK~~~wE~~f~~r 450 (1560)
T PTZ00243 371 PMVLLLSILLLSRLVGWCALMAVAVLLVTLPLNGAIMKHQMAARRKIAKAADARVKATNEFFSGIRIAKFMAWEPCFVAN 450 (1560)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444667777777777778888899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001411 90 YSHSLKEALKQGKKSGVAKGIGVGLTYGLLFCAWALLLWYAGILVRHGDTNGGKAFTTIINVIFSGFALGQAAPNLAAIA 169 (1082)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~l~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~ 169 (1082)
+++.++++.+..++......+...+......+.. ++.+++|.+.++.+|++.+|+++..+.....|+..++..+..+.
T Consensus 451 i~~~R~~El~~l~~~~~~~~~~~~~~~~~p~l~~--~~~f~~y~~~g~~Lt~~~vft~laL~~~L~~Pl~~lp~~~~~~~ 528 (1560)
T PTZ00243 451 IEDKRARELRYLRDVQLARVATSFVNNATPTLMI--AVVFTVYYLLGHELTPEVVFPTIALLGVLRMPFFMIPWVFTTVL 528 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999988877777665554444333332 23467788889999999999998777777789999999999999
Q ss_pred HHHHHHHHHHHHHhccCCCC----CC-C-------CCC--C---------------CC----------------------
Q 001411 170 KGKAAAANIISIIKENSHSS----ER-P-------GDD--G---------------IT---------------------- 198 (1082)
Q Consensus 170 ~~~~a~~ri~~~l~~~~~~~----~~-~-------~~~--~---------------~~---------------------- 198 (1082)
++.+|++||.+||+.++... +. . ... . ..
T Consensus 529 ~a~vS~~RI~~fL~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 608 (1560)
T PTZ00243 529 QFLVSIKRISTFLECDNATCSTVQDMEEYWREQREHSTACQLAAVLENVDVTAFVPVKLPRAPKVKTSLLSRALRMLCCE 608 (1560)
T ss_pred HHHHHHHHHHHHHcCccccccccccchhhcccccccccccccccccccccccccccccccccccccccccccchhhcccc
Confidence 99999999999996543100 00 0 000 0 00
Q ss_pred -----CCCCCCcEEEEEEEEECCC--------------------------------------CCCccccceeEEEeCCCE
Q 001411 199 -----LPKLAGQIEFSEVCFAYPS--------------------------------------RPHMVFENLNFSVDAGKT 235 (1082)
Q Consensus 199 -----~~~~~~~i~~~~v~~~y~~--------------------------------------~~~~~l~~i~l~i~~g~~ 235 (1082)
.....+.+.++|++|.++. .++++|+|+||+|++|++
T Consensus 609 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~isl~i~~G~~ 688 (1560)
T PTZ00243 609 QCRPTKRHPSPSVVVEDTDYGSPSSASRHIVEGGTGGGHEATPTSERSAKTPKMKTDDFFELEPKVLLRDVSVSVPRGKL 688 (1560)
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccCCceeEeeeEEEECCCCE
Confidence 0001124677777776431 123489999999999999
Q ss_pred EEEEcCCCCcHHHHHHHHHhCCCCCCcEEEECCeeCCCCCHHHHhhhceEEccCCCcChhcHHHHHhcCCCCCCHHHHHH
Q 001411 236 FAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNILLGKEDASMDRVIE 315 (1082)
Q Consensus 236 ~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ti~~ni~~g~~~~~~~~~~~ 315 (1082)
++|+||||||||||+++|+|+++|++|+|.++ ++|+||+|+||+|++||+|||.++.+. +.+++.+
T Consensus 689 ~~IiG~nGsGKSTLL~~i~G~~~~~~G~i~~~-------------~~i~yv~Q~~~l~~~Tv~enI~~~~~~-~~~~~~~ 754 (1560)
T PTZ00243 689 TVVLGATGSGKSTLLQSLLSQFEISEGRVWAE-------------RSIAYVPQQAWIMNATVRGNILFFDEE-DAARLAD 754 (1560)
T ss_pred EEEECCCCCcHHHHHHHHhcCCCCCCcEEEEC-------------CeEEEEeCCCccCCCcHHHHHHcCChh-hHHHHHH
Confidence 99999999999999999999999999999864 469999999999999999999998653 4556777
Q ss_pred HHHHhchHHHHhcCCCCccccccCCCCCCChHHHHHHHHHHhcccCCCeeEEeCcccCCCHHHHHHHHH-HHHHHcCCCe
Q 001411 316 AAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQR-ALEKIMSNRT 394 (1082)
Q Consensus 316 ~~~~~~~~~~i~~lp~g~~t~~g~~g~~LSgGqkqri~lARal~~~~~illlDEpts~LD~~~~~~i~~-~l~~~~~~~t 394 (1082)
+++.++++++++.+|+|++|.+|++|.+|||||||||+||||||++|+|+|||||||+||+++++.+.+ ++....+++|
T Consensus 755 ~~~~~~l~~~l~~l~~g~~t~i~~~g~~LSGGQkqRvaLARAl~~~p~illLDEP~saLD~~~~~~i~~~~~~~~~~~~T 834 (1560)
T PTZ00243 755 AVRVSQLEADLAQLGGGLETEIGEKGVNLSGGQKARVSLARAVYANRDVYLLDDPLSALDAHVGERVVEECFLGALAGKT 834 (1560)
T ss_pred HHHHhhhHHHHHHhhccchHHhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHhhCCCE
Confidence 888888999999999999999999999999999999999999999999999999999999998877765 4544556899
Q ss_pred EEEEccCccccccCCEEEEEeCCEEEEecCchhhhhcCchhHHHHHhhhccccCCCC-cccC--CCCCCCC---CCCC-C
Q 001411 395 TIVVAHRLSTVRDVDTIMVLKNGQVVESGTHVDLISKGGEYAALVNLQSSEHLSNPS-SICY--SGSSRYS---SFRD-F 467 (1082)
Q Consensus 395 ~i~vtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~---~~~~-~ 467 (1082)
+|+|||+++.++.||+|++|++|++++.|+++++++. +.|..+............. ...+ ....... .... .
T Consensus 835 vIlvTH~~~~~~~ad~ii~l~~G~i~~~G~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 913 (1560)
T PTZ00243 835 RVLATHQVHVVPRADYVVALGDGRVEFSGSSADFMRT-SLYATLAAELKENKDSKEGDADAEVAEVDAAPGGAVDHEPPV 913 (1560)
T ss_pred EEEEeCCHHHHHhCCEEEEEECCEEEEecCHHHHHhC-hHHHHHHHhhcccccccccccccccccccccccccccccccc
Confidence 9999999999999999999999999999999999875 4576665432211100000 0000 0000000 0000 0
Q ss_pred CCCcccchhhh--h-----hhhhhhccCCCCCCCchhHHHHHHHhcchhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHh
Q 001411 468 PSSRRYDVEFE--S-----SKRRELQSSDQSFAPSPSIWELLKLNAAEWPYAVLGSVGAILAGMEAPLFALGITHILTAF 540 (1082)
Q Consensus 468 ~~~~~~~~~~~--~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 540 (1082)
........... . ....+.++......+...+++++.... .+.+..+. +..+ ...-....+..+|..+
T Consensus 914 ~~~~~~~~~~~~~~~~~~~~~l~~~e~~~~g~v~~~~y~~Y~~~~g-~~~~~~~~-l~~~----~~~~~~~~~~~~wl~~ 987 (1560)
T PTZ00243 914 AKQEGNAEGGDGAALDAAAGRLMTREEKASGSVPWSTYVAYLRFCG-GLHAAGFV-LATF----AVTELVTVSSGVWLSM 987 (1560)
T ss_pred cccccccccccccccccccchhhhHHHHhcCcccHHHHHHHHHHhh-hHHHHHHH-HHHH----HHHHHHHHHHHHHHHH
Confidence 00000000000 0 000000000011111111222222111 11111100 0000 0111112334455666
Q ss_pred cCCCchhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccccccCCChhHHHHHHHh
Q 001411 541 YSPHDSQIKRVVDQVALIFVGLAVVTIPVYLLQHYFYTLMGEHLTARVRLSMFSAILSNEIGWFDLDENNTGLLISTLAA 620 (1082)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~l~~~~~ffd~~~~~~G~il~r~s~ 620 (1082)
|..... ......|+.+|+++.++..++.+++.+.....+.+.+.++|.+++++++++|++|||. +++|+++|||++
T Consensus 988 w~~~~~--~~~~~~~l~~y~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ffd~--~~~G~ilnR~s~ 1063 (1560)
T PTZ00243 988 WSTRSF--KLSAATYLYVYLGIVLLGTFSVPLRFFLSYEAMRRGSRNMHRDLLRSVSRGTMSFFDT--TPLGRILNRFSR 1063 (1560)
T ss_pred hccccc--CCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhccC--CCccHHHHHHHh
Confidence 654221 1122356777887777777777777777777788889999999999999999999985 899999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH----HHHHHHHH
Q 001411 621 DATLVRSALADRLSIIVQNVALTVTAFVIAFILSWRLAAVVAASLPLLIGAFVAEQLFLKGFGGDYNR----AYSRATSV 696 (1082)
Q Consensus 621 D~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~ 696 (1082)
|++.+|..++..+..++..++.+++.++++++.+|.+ +++++|+.++++.+.. +..+..++.++ ..++..++
T Consensus 1064 Di~~id~~l~~~l~~~~~~~~~~i~~li~~~~~~p~~---~~~~i~~~~~~~~i~~-~~~~~~r~~~r~~~~~~s~l~s~ 1139 (1560)
T PTZ00243 1064 DIDILDNTLPMSYLYLLQCLFSICSSILVTSASQPFV---LVALVPCGYLYYRLMQ-FYNSANREIRRIKSVAKSPVFTL 1139 (1560)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhcHHHHH
Confidence 9999999999999999999999998888888887743 3344454444433333 33334455554 34556799
Q ss_pred HHHHHccHHHHHHcCcHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hCCCCHHHH
Q 001411 697 AREAIANIRTVAAYGIEKRISIQFASELSQPNKQALLRGHISGFGYGVSQLLSLCSYALGLWYASVLIK--QKGSNFGDI 774 (1082)
Q Consensus 697 ~~e~l~g~~tIra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~ 774 (1082)
+.|++.|+.|||+||.++.+.+++.+.++.+.+..+.......|......++..+...+..+++..... .+..+.|.+
T Consensus 1140 ~~E~l~G~~tIraf~~e~~~~~~~~~~~d~~~~~~~~~~~~~~w~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~l 1219 (1560)
T PTZ00243 1140 LEEALQGSATITAYGKAHLVMQEALRRLDVVYSCSYLENVANRWLGVRVEFLSNIVVTVIALIGVIGTMLRATSQEIGLV 1219 (1560)
T ss_pred HHHHHcCHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHH
Confidence 999999999999999999999999999999999888877777777776666665555444445444332 344677777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCC-CC------------------------CCCCc---
Q 001411 775 MKSFMVLIITALAVAETLALAPDIVKGSQALGPVFGILYRKTAIQ-PD------------------------DPASK--- 826 (1082)
Q Consensus 775 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~~~~~~~~~-~~------------------------~~~~~--- 826 (1082)
..++.+......++..+...+..++..+.+++|+.++++..++++ +. ++...
T Consensus 1220 ~~~l~~a~~l~~~l~~l~~~~~~le~~~~s~eRi~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1299 (1560)
T PTZ00243 1220 SLSLTMAMQTTATLNWLVRQVATVEADMNSVERLLYYTDEVPHEDMPELDEEVDALERRTGMAADVTGTVVIEPASPTSA 1299 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccccccccccccccccccccccccccccCCCccc
Confidence 667777777778888889999999999999999999986433221 00 00000
Q ss_pred -ccccccccEEEEeEEEECCCCCCcccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCccCCCCC
Q 001411 827 -EVTEIKGNIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLN 905 (1082)
Q Consensus 827 -~~~~~~g~I~~~~Vs~~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~ 905 (1082)
+.++..|.|+|+||+|+|++. .++||+||||+|+||||||||||||||||||+++|+|+|+|++|+|+|||+||++++
T Consensus 1300 ~~~~~~~G~I~f~nVsf~Y~~~-~~~vL~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~p~~G~I~IDG~di~~i~ 1378 (1560)
T PTZ00243 1300 APHPVQAGSLVFEGVQMRYREG-LPLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYG 1378 (1560)
T ss_pred CCCCCCCCeEEEEEEEEEeCCC-CCceeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccCC
Confidence 112356889999999999742 346999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcceEEEcccCccccccHHHHhccCCCCCCHHHHHHHHHHhcHHHHHhhCcccccccccCCCCCCChhHHHHHHHH
Q 001411 906 LRSLRRKIGLVQQEPALFSTTIYENIKYGNEDASEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIA 985 (1082)
Q Consensus 906 ~~~lR~~i~~VpQdp~Lf~gTIreNl~~~~~~~~d~ei~~al~~a~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlaLA 985 (1082)
+++||++|+||||||+||+||||+||+|+ ++++|+|+|+|+++++++++|.++|+||||.|||+|.|||||||||||||
T Consensus 1379 l~~LR~~I~iVpQdp~LF~gTIreNIdp~-~~~sdeeI~~Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgGQrQrLaLA 1457 (1560)
T PTZ00243 1379 LRELRRQFSMIPQDPVLFDGTVRQNVDPF-LEASSAEVWAALELVGLRERVASESEGIDSRVLEGGSNYSVGQRQLMCMA 1457 (1560)
T ss_pred HHHHHhcceEECCCCccccccHHHHhCcc-cCCCHHHHHHHHHHCCChHHHhhCcccccccccCCcCcCCHHHHHHHHHH
Confidence 99999999999999999999999999995 57899999999999999999999999999999999999999999999999
Q ss_pred HHHccC-CCEEEeeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhccCEEEEEeCCEEEEecChHHHhhhccc
Q 001411 986 RAILKN-PSILLLDEATSALDTASENLIQEALDKLMEGRTTIMVAHRLSTIRNADKIAVLQQGKVAEIGSHEQLLRKENG 1064 (1082)
Q Consensus 986 RAlL~~-~~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~~DrI~Vl~~G~ive~G~~~eLl~~~~g 1064 (1082)
||||++ |+|||||||||+||++||+.|+++|++.+++||+|+||||++++.+||+|+||++|+|+|+|+|+||+++++|
T Consensus 1458 RALL~~~~~ILlLDEATSaLD~~te~~Iq~~L~~~~~~~TvI~IAHRl~ti~~~DrIlVLd~G~VvE~Gt~~eLl~~~~~ 1537 (1560)
T PTZ00243 1458 RALLKKGSGFILMDEATANIDPALDRQIQATVMSAFSAYTVITIAHRLHTVAQYDKIIVMDHGAVAEMGSPRELVMNRQS 1537 (1560)
T ss_pred HHHhcCCCCEEEEeCCCccCCHHHHHHHHHHHHHHCCCCEEEEEeccHHHHHhCCEEEEEECCEEEEECCHHHHHhCCCC
Confidence 999996 8999999999999999999999999999999999999999999999999999999999999999999986789
Q ss_pred hHHHHHHHhhc
Q 001411 1065 IYKQLIRLQQD 1075 (1082)
Q Consensus 1065 ~f~~l~~~~~~ 1075 (1082)
.|++|++.+..
T Consensus 1538 ~f~~l~~~~~~ 1548 (1560)
T PTZ00243 1538 IFHSMVEALGR 1548 (1560)
T ss_pred HHHHHHHHhCh
Confidence 99999987654
|
|
| >TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-142 Score=1398.84 Aligned_cols=1021 Identities=20% Similarity=0.275 Sum_probs=772.5
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHH
Q 001411 14 FVGFAVGFTSVWQLTLLTLAVVPLIAVAGGAYTITMSTLSEKGEAAYGEAGKVAEEIISQVRAVYAFVGEAKAIESYSHS 93 (1082)
Q Consensus 14 ~~~~~~~~~~~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~ 93 (1082)
++++++++......+++.++++++++++..++++++.+..++.++..+++.+.+.|.++|||+||+|+||+.+.+++++.
T Consensus 210 ~~~~~lL~~~~G~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~E~l~~ik~IK~~~~E~~~~~~i~~~ 289 (1490)
T TIGR01271 210 ILLMGLIWELLEVNGFCGLGFLILLALFQACLGQKMMPYRDKRAGKISERLAITSEIIENIQSVKAYCWEEAMEKIIKNI 289 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhHHHHHHHHHHH
Confidence 33344444444456677777888888888899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Q 001411 94 LKEALKQGKKSGVAKGIGVGLTYGLLFCAWALLLWYAGILVRHGDTNGGKAFTTIINVIFSGFALG-QAAPNLAAIAKGK 172 (1082)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~l~~g~~~~~~~~~~~~~~~l~-~~~~~~~~~~~~~ 172 (1082)
++++.+...+......+...+..+.. ..+.++++++|.+.++ ++++.+|+++..+.....++. .++..+..+.++.
T Consensus 290 R~~El~~~~~~~~~~~~~~~~~~~~~--~~~~~~~f~~y~~~~~-~~~~~~ft~lal~~lL~~~l~~~lp~~~~~~~~a~ 366 (1490)
T TIGR01271 290 RQDELKLTRKIAYLRYFYSSAFFFSG--FFVVFLSVVPYALIKG-IILRRIFTTISYCIVLRMTVTRQFPGAIQTWYDSL 366 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999988887776644444333322 2334556677777654 688999988755555555654 6788889999999
Q ss_pred HHHHHHHHHHhccCCCCCCCCCCCCCCCCCCCcEEEEEEEEECCCC--------------------------------CC
Q 001411 173 AAAANIISIIKENSHSSERPGDDGITLPKLAGQIEFSEVCFAYPSR--------------------------------PH 220 (1082)
Q Consensus 173 ~a~~ri~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~--------------------------------~~ 220 (1082)
+|++||.+||+.++... . .. ......++++|++|.|+.. .+
T Consensus 367 ~s~~RI~~fL~~~e~~~-~-~~-----~~~~~~i~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 439 (1490)
T TIGR01271 367 GAITKIQDFLCKEEYKT-L-EY-----NLTTTEVEMVNVTASWDEGIGELFEKIKQNNKARKQPNGDDGLFFSNFSLYVT 439 (1490)
T ss_pred HHHHHHHHHhcCccccc-c-cc-----cCCCCceEEecceEecCCccccccccccccccccccccccccccccccccccC
Confidence 99999999996543211 0 00 0112358999999999531 12
Q ss_pred ccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHHhCCCCCCcEEEECCeeCCCCCHHHHhhhceEEccCCCcChhcHHHH
Q 001411 221 MVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGLVSQEPALFATSIANN 300 (1082)
Q Consensus 221 ~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ti~~n 300 (1082)
++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++| +|+||+|+||+|++||+||
T Consensus 440 ~~l~~i~l~i~~G~~~~I~G~~GsGKSTLl~~l~G~~~~~~G~i~~~g-------------~iayv~Q~~~l~~~Ti~eN 506 (1490)
T TIGR01271 440 PVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEGKIKHSG-------------RISFSPQTSWIMPGTIKDN 506 (1490)
T ss_pred cceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECC-------------EEEEEeCCCccCCccHHHH
Confidence 489999999999999999999999999999999999999999999998 4999999999999999999
Q ss_pred HhcCCCCCCHHHHHHHHHHhchHHHHhcCCCCccccccCCCCCCChHHHHHHHHHHhcccCCCeeEEeCcccCCCHHHHH
Q 001411 301 ILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESEL 380 (1082)
Q Consensus 301 i~~g~~~~~~~~~~~~~~~~~~~~~i~~lp~g~~t~~g~~g~~LSgGqkqri~lARal~~~~~illlDEpts~LD~~~~~ 380 (1082)
|.||.+. +.+++.++++.+++.+++..+|+|++|.+|++|.+|||||||||+||||+|++|+|+|||||||+||+++++
T Consensus 507 I~~g~~~-~~~~~~~~~~~~~L~~~l~~l~~g~~t~vg~~g~~LSgGqkqRi~lARAl~~~~~illLDep~saLD~~~~~ 585 (1490)
T TIGR01271 507 IIFGLSY-DEYRYTSVIKACQLEEDIALFPEKDKTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEK 585 (1490)
T ss_pred HHhcccc-chHHHHHHHHHHhHHHHHHhccccccccccCcCCCcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHH
Confidence 9999753 445666777777888999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHH-HHHHHcCCCeEEEEccCccccccCCEEEEEeCCEEEEecCchhhhhcCchhHHHHHhhhc------c--------
Q 001411 381 IVQR-ALEKIMSNRTTIVVAHRLSTVRDVDTIMVLKNGQVVESGTHVDLISKGGEYAALVNLQSS------E-------- 445 (1082)
Q Consensus 381 ~i~~-~l~~~~~~~t~i~vtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~------~-------- 445 (1082)
.+.+ ++.++.+++|+|+|||+++.++.||+|++|++|++++.|+++++.+.++.|.+.+..... +
T Consensus 586 ~i~~~~l~~~~~~~tvilvtH~~~~~~~ad~ii~l~~g~i~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 665 (1490)
T TIGR01271 586 EIFESCLCKLMSNKTRILVTSKLEHLKKADKILLLHEGVCYFYGTFSELQAKRPDFSSLLLGLEAFDNFSAERRNSILTE 665 (1490)
T ss_pred HHHHHHHHHHhcCCeEEEEeCChHHHHhCCEEEEEECCEEEEEcCHHHHHhcChHHHHHHhccccccccccccccccccc
Confidence 9887 567777789999999999999999999999999999999999998876666665531000 0
Q ss_pred -------c-cC----CCCc------ccCCC--C-----------------------------CCCCC-CCCCC-------
Q 001411 446 -------H-LS----NPSS------ICYSG--S-----------------------------SRYSS-FRDFP------- 468 (1082)
Q Consensus 446 -------~-~~----~~~~------~~~~~--~-----------------------------~~~~~-~~~~~------- 468 (1082)
. .. .+.. ..... . ...+. ..+..
T Consensus 666 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 745 (1490)
T TIGR01271 666 TLRRVSIDGDSTVFSGPETIKQSFKQPPPEFAEKRKQSIILNPIASARKFSFVQMGPQKAQATTIEDAVREPSERKFSLV 745 (1490)
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhccccccccccc
Confidence 0 00 0000 00000 0 00000 00000
Q ss_pred ---------C--Cc-----------cc--------c-------h-h---hhh------------hh------h-hhh---
Q 001411 469 ---------S--SR-----------RY--------D-------V-E---FES------------SK------R-REL--- 485 (1082)
Q Consensus 469 ---------~--~~-----------~~--------~-------~-~---~~~------------~~------~-~~~--- 485 (1082)
. .. .. . . . ... .. . .+.
T Consensus 746 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 825 (1490)
T TIGR01271 746 PEDEQGEESLPRGNQYHHGLQHQAQRRQSVLQLMTHSNRGENRREQLQTSFRKKSSITQQNELASELDIYSRRLSKDSVY 825 (1490)
T ss_pred ccccccccccccccccccccccccccccchhhcccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 0 00 00 0 0 0 000 00 0 000
Q ss_pred --------c-------cCCCCCCCchh---HHHHHHHhcchhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCc--
Q 001411 486 --------Q-------SSDQSFAPSPS---IWELLKLNAAEWPYAVLGSVGAILAGMEAPLFALGITHILTAFYSPHD-- 545 (1082)
Q Consensus 486 --------~-------~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 545 (1082)
+ ..+.+..+... ++++++. .+.+.++.+.+++.++ ......+..+|..+|....
T Consensus 826 ~~~~~~~~~~~~~~~~~~e~~~~g~v~~~vY~~Y~~~-~g~~~~~~~~~~~~~~-----~~~~~~~~~~wl~~~~~~~~~ 899 (1490)
T TIGR01271 826 EISEEINEEDLKECFADERENVFETTTWNTYLRYITT-NRNLVFVLIFCLVIFL-----AEVAASLLGLWLITDNPSAPN 899 (1490)
T ss_pred cccccchhhhhhhhhhHHHHhhcCcccHHHHHHHHHh-cCcHHHHHHHHHHHHH-----HHHHHHHhhHHHHhccccccc
Confidence 0 00000011111 1122211 1111111111111111 1122334455555553210
Q ss_pred ------h-h-h---------HhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccc
Q 001411 546 ------S-Q-I---------KRVVDQV-ALIFVGLAVVTIPVYLLQHYFYTLMGEHLTARVRLSMFSAILSNEIGWFDLD 607 (1082)
Q Consensus 546 ------~-~-~---------~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~l~~~~~ffd~~ 607 (1082)
. . . .....+| .++|++++++..++.+++.+++.+.+.+++.++|.+++++++++|++||+.
T Consensus 900 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ff~~- 978 (1490)
T TIGR01271 900 YVDQQHANASSPDVQKPVIITPTSAYYIFYIYVGTADSVLALGFFRGLPLVHTLLTVSKRLHEQMLHSVLQAPMAVLNT- 978 (1490)
T ss_pred ccccccccCCCccccccccccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCC-
Confidence 0 0 0 0011122 455556665566777888888999999999999999999999999999985
Q ss_pred CCChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 001411 608 ENNTGLLISTLAADATLVRSALADRLSIIVQNVALTVTAFVIAFILSWRLAAVVAASLPLLIGAFVAEQLFLKGFGGDYN 687 (1082)
Q Consensus 608 ~~~~G~il~r~s~D~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~ 687 (1082)
+|+|+++|||++|++.+|+.++..+..++..++.+++.++++++++|++. ++++|++++++++..++ .+..++.+
T Consensus 979 -~~~G~ilnRfs~Di~~id~~l~~~~~~~~~~~~~~i~~l~~i~~~~p~l~---l~~~~l~~~~~~~~~~~-~~~~r~l~ 1053 (1490)
T TIGR01271 979 -MKAGRILNRFTKDMAIIDDMLPLTLFDFIQLTLIVLGAIFVVSVLQPYIF---IAAIPVAVIFIMLRAYF-LRTSQQLK 1053 (1490)
T ss_pred -CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 89999999999999999999999999999999999998888888887653 34555544444333333 33455555
Q ss_pred HH----HHHHHHHHHHHHccHHHHHHcCcHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001411 688 RA----YSRATSVAREAIANIRTVAAYGIEKRISIQFASELSQPNKQALLRGHISGFGYGVSQLLSLCSYALGLWYASVL 763 (1082)
Q Consensus 688 ~~----~~~~~~~~~e~l~g~~tIra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 763 (1082)
+. .+...+++.|++.|+.|||+||+++++.+++.+..+...+..+.......|......++..+......+++
T Consensus 1054 ~~~~~~~s~l~~~~~Etl~Gl~tIraf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~i~~~~~~~~~~l~--- 1130 (1490)
T TIGR01271 1054 QLESEARSPIFSHLITSLKGLWTIRAFGRQSYFETLFHKALNLHTANWFLYLSTLRWFQMRIDIIFVFFFIAVTFIA--- 1130 (1490)
T ss_pred HHHHHHhhHHHHHHHHHhcCHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Confidence 53 34456999999999999999999999999999999988777766655556655444443332222211111
Q ss_pred HHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCCC----------------CCcc
Q 001411 764 IKQKGSNFGDIMKSFMVLIITALAVAETLALAPDIVKGSQALGPVFGILYRKTAIQPDDP----------------ASKE 827 (1082)
Q Consensus 764 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~~~~~~~~~~~~~----------------~~~~ 827 (1082)
+.......|.+..++.+.......+......+..++..+.+++|+.++.+.+++.+...+ ..++
T Consensus 1131 ~~~~~~~~g~~g~~l~~~~~l~~~l~~l~~~~~~le~~~~s~eRi~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 1210 (1490)
T TIGR01271 1131 IGTNQDGEGEVGIILTLAMNILSTLQWAVNSSIDVDGLMRSVSRVFKFIDLPQEEPRPSGGGGKYQLSTVLVIENPHAQK 1210 (1490)
T ss_pred HHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccccccccccccCCCCC
Confidence 111223344444444444455556677777888999999999999999876554321100 0112
Q ss_pred cccccccEEEEeEEEECCCCCCcccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCccCCCCCHH
Q 001411 828 VTEIKGNIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLR 907 (1082)
Q Consensus 828 ~~~~~g~I~~~~Vs~~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~ 907 (1082)
.||..|.|+|+||+|+|+.. .+++|+|+||+|+||||||||||||||||||+++|+|+++ .+|+|+|||+||++++++
T Consensus 1211 ~wp~~g~I~f~nVs~~Y~~~-~~~vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl~~-~~G~I~IdG~di~~i~~~ 1288 (1490)
T TIGR01271 1211 CWPSGGQMDVQGLTAKYTEA-GRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLS-TEGEIQIDGVSWNSVTLQ 1288 (1490)
T ss_pred CCCCCCeEEEEEEEEEeCCC-CcceeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEcccCCHH
Confidence 35778999999999999742 4689999999999999999999999999999999999998 799999999999999999
Q ss_pred HHhcceEEEcccCccccccHHHHhccCCCCCCHHHHHHHHHHhcHHHHHhhCcccccccccCCCCCCChhHHHHHHHHHH
Q 001411 908 SLRRKIGLVQQEPALFSTTIYENIKYGNEDASEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARA 987 (1082)
Q Consensus 908 ~lR~~i~~VpQdp~Lf~gTIreNl~~~~~~~~d~ei~~al~~a~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlaLARA 987 (1082)
++|++|+||||||+||+||||+||+|+ .+++|+++|+||++++++++|.++|+||||+|+|+|.+||||||||||||||
T Consensus 1289 ~lR~~is~IpQdp~LF~GTIR~NLdp~-~~~tdeei~~aL~~~~L~~~i~~lp~GLdt~v~e~G~nLSgGQrQrL~LARA 1367 (1490)
T TIGR01271 1289 TWRKAFGVIPQKVFIFSGTFRKNLDPY-EQWSDEEIWKVAEEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQLMCLARS 1367 (1490)
T ss_pred HHHhceEEEeCCCccCccCHHHHhCcc-cCCCHHHHHHHHHHCCCHHHHHhCccccccccccCCCcCCHHHHHHHHHHHH
Confidence 999999999999999999999999995 4789999999999999999999999999999999999999999999999999
Q ss_pred HccCCCEEEeeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhccCEEEEEeCCEEEEecChHHHhhhccchHH
Q 001411 988 ILKNPSILLLDEATSALDTASENLIQEALDKLMEGRTTIMVAHRLSTIRNADKIAVLQQGKVAEIGSHEQLLRKENGIYK 1067 (1082)
Q Consensus 988 lL~~~~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~~DrI~Vl~~G~ive~G~~~eLl~~~~g~f~ 1067 (1082)
|||+|+|||||||||+||++||+.|+++|++.+++||||+||||++++.+||||+||++|+|+|+|+|++|++ ++|.|+
T Consensus 1368 LLr~~~ILlLDEaTS~lD~~Te~~I~~~L~~~~~~~TvI~IaHRl~ti~~~DrIlvL~~G~ivE~g~p~~Ll~-~~~~f~ 1446 (1490)
T TIGR01271 1368 ILSKAKILLLDEPSAHLDPVTLQIIRKTLKQSFSNCTVILSEHRVEALLECQQFLVIEGSSVKQYDSIQKLLN-ETSLFK 1446 (1490)
T ss_pred HhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHhCCEEEEEECCEEEEeCCHHHHHc-CCcHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999997 689999
Q ss_pred HHHHHhhccC
Q 001411 1068 QLIRLQQDKN 1077 (1082)
Q Consensus 1068 ~l~~~~~~~~ 1077 (1082)
+|++.+....
T Consensus 1447 ~l~~~~~~~~ 1456 (1490)
T TIGR01271 1447 QAMSAADRLK 1456 (1490)
T ss_pred HHHHHhChhc
Confidence 9998765443
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. |
| >KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-109 Score=948.02 Aligned_cols=576 Identities=36% Similarity=0.592 Sum_probs=541.7
Q ss_pred hHHHHHHHhcchhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCchhhHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001411 497 SIWELLKLNAAEWPYAVLGSVGAILAGMEAPLFALGITHILTAFYSPHDSQIKRVVDQVALIFVGLAVVTIPVYLLQHYF 576 (1082)
Q Consensus 497 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 576 (1082)
.+++++.+.++.|+++..++++.++......+.+.+.+++++.++.... ..........++.++.++..++.+++.++
T Consensus 134 ~~~rl~~l~~~~~~~l~~a~~~l~vss~~~~~iP~~~G~~id~~~~~~~--~~~~~~~~~~~l~~l~~~~a~~~~~r~~~ 211 (716)
T KOG0058|consen 134 LLKRLLGLLKPEWKWLVAAFVLLLVSSLINMFIPYYLGKLIDTISEGDD--SADALKRACTILLGLFLIGALANAIRGGL 211 (716)
T ss_pred HHHHHHHHhchhHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhccc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5678999999999999998888888777777777888888887766111 12233345566777788889999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCccccccCCChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001411 577 YTLMGEHLTARVRLSMFSAILSNEIGWFDLDENNTGLLISTLAADATLVRSALADRLSIIVQNVALTVTAFVIAFILSWR 656 (1082)
Q Consensus 577 ~~~~~~~~~~~l~~~l~~~~l~~~~~ffd~~~~~~G~il~r~s~D~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 656 (1082)
+.++++++..++|.++|+++++++++|||. |.+|++++|++.|...+.+.++..+...+.+.+..++++.++++.+|.
T Consensus 212 ~~~a~~rv~~rlR~~lF~sil~QdiaFFD~--nktGeL~SRLtsD~~~vs~svs~nls~~lR~~~~~~g~~~~M~~~S~~ 289 (716)
T KOG0058|consen 212 LQYAGERVVARLRTDLFRSLLRQDIAFFDE--NKTGELISRLTSDTQIVSNSVSQNLSDGLRNLVQGFGGLGFMFSLSWR 289 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhcc--CCccHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhHH
Confidence 999999999999999999999999999996 789999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHccHHHHHHcCcHHHHHHHHHHHHhhHHHHHHHHHH
Q 001411 657 LAAVVAASLPLLIGAFVAEQLFLKGFGGDYNRAYSRATSVAREAIANIRTVAAYGIEKRISIQFASELSQPNKQALLRGH 736 (1082)
Q Consensus 657 l~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~tIra~~~~~~~~~~~~~~~~~~~~~~~~~~~ 736 (1082)
|+++.++.+|++++...++.+++++.+++.+.+.++++....|.+.+++|||+|+.|++..++|.+.+++..+...+...
T Consensus 290 Ltlv~~i~~P~v~~~~~~yG~~~rklS~~~Q~a~A~a~~vaeE~ls~~rTVRsfa~E~~E~~ry~~~l~~~~~i~~k~a~ 369 (716)
T KOG0058|consen 290 LTLVTLIVVPIVALVAKIYGKYLRKLSKQTQDALARANQVAEEVLSAMRTVRSFAAEEQEVKRYNKKLREVLKLSKKEAV 369 (716)
T ss_pred HHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 001411 737 ISGFGYGVSQLLSLCSYALGLWYASVLIKQKGSNFGDIMKSFMVLIITALAVAETLALAPDIVKGSQALGPVFGILYRKT 816 (1082)
Q Consensus 737 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~~~~~~ 816 (1082)
..+.+++...+..++.....+|+|..++..|.++.|++.+++++......++..+...+.++.++..|.+|++++++++|
T Consensus 370 a~~~f~~~~~~~~~~~~~siL~~Gg~Lv~~g~mt~g~L~sFllY~~~~g~sl~~ls~~ys~lmkgvGAs~rvFel~dr~P 449 (716)
T KOG0058|consen 370 AYGIFFGSTNLLGNLAVLSILFYGGHLVLTGSLTSGALSSFLLYQVQLGSSLSGLSSFYSELMKGVGASERVFELMDRKP 449 (716)
T ss_pred HhhHhHhHHHHHHhHHHHHHHHhccchhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cCCCCCCCCcccccccccEEEEeEEEECCCCCCcccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEE
Q 001411 817 AIQPDDPASKEVTEIKGNIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLI 896 (1082)
Q Consensus 817 ~~~~~~~~~~~~~~~~g~I~~~~Vs~~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~i 896 (1082)
..+++ ....+. ..+|.|+|+||+|+||.||+.|||+|+||+|+|||+||+||||||||||++++|.|||+|++|+|++
T Consensus 450 ~i~~~-G~~~p~-~~~G~IeF~~VsFaYP~Rp~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~PtsG~Ill 527 (716)
T KOG0058|consen 450 RIPLT-GTLAPD-HLQGVIEFEDVSFAYPTRPDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPTSGRILL 527 (716)
T ss_pred CCCCC-Cccccc-cccceEEEEEeeeecCCCCCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEE
Confidence 87765 222222 6789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccCCCCCHHHHhcceEEEcccCccccccHHHHhccCCCCCCHHHHHHHHHHhcHHHHHhhCcccccccccCCCCCCCh
Q 001411 897 DGYDIRTLNLRSLRRKIGLVQQEPALFSTTIYENIKYGNEDASEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSG 976 (1082)
Q Consensus 897 dG~di~~i~~~~lR~~i~~VpQdp~Lf~gTIreNl~~~~~~~~d~ei~~al~~a~l~~~i~~lp~gldt~v~e~G~~LSg 976 (1082)
||+||+++++++||++||+|.|||+||++||+|||.||.+.++||||.+|+++|++|+||..+|+||||.|||+|.+|||
T Consensus 528 DG~~i~~~~~~~lr~~Ig~V~QEPvLFs~sI~eNI~YG~~~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qLSG 607 (716)
T KOG0058|consen 528 DGVPISDINHKYLRRKIGLVGQEPVLFSGSIRENIAYGLDNATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQLSG 607 (716)
T ss_pred CCeehhhcCHHHHHHHeeeeeccceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhccCEEEEEeCCEEEEecChH
Q 001411 977 GQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLMEGRTTIMVAHRLSTIRNADKIAVLQQGKVAEIGSHE 1056 (1082)
Q Consensus 977 GQrQrlaLARAlL~~~~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~~DrI~Vl~~G~ive~G~~~ 1056 (1082)
||||||||||||+|||+|||||||||+||.++|..||++|.+..+++|||+|||||+||+.||+|+|+++|+|+|.|+|+
T Consensus 608 GQKQRIAIARALlr~P~VLILDEATSALDaeSE~lVq~aL~~~~~~rTVlvIAHRLSTV~~Ad~Ivvi~~G~V~E~G~h~ 687 (716)
T KOG0058|consen 608 GQKQRIAIARALLRNPRVLILDEATSALDAESEYLVQEALDRLMQGRTVLVIAHRLSTVRHADQIVVIDKGRVVEMGTHD 687 (716)
T ss_pred hHHHHHHHHHHHhcCCCEEEEechhhhcchhhHHHHHHHHHHhhcCCeEEEEehhhhHhhhccEEEEEcCCeEEecccHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhccchHHHHHHHhhccCC
Q 001411 1057 QLLRKENGIYKQLIRLQQDKNP 1078 (1082)
Q Consensus 1057 eLl~~~~g~f~~l~~~~~~~~~ 1078 (1082)
||+++++|.|++|++.|....+
T Consensus 688 eLl~~~~gly~~Lv~~q~~~~~ 709 (716)
T KOG0058|consen 688 ELLSKPNGLYAKLVQRQLDSGE 709 (716)
T ss_pred HHhhCcccHHHHHHHHhcccCC
Confidence 9999888999999999876654
|
|
| >KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-95 Score=882.58 Aligned_cols=578 Identities=44% Similarity=0.714 Sum_probs=536.2
Q ss_pred hHHHHHHHh-cchhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCchhhHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001411 497 SIWELLKLN-AAEWPYAVLGSVGAILAGMEAPLFALGITHILTAFYSPHDSQIKRVVDQVALIFVGLAVVTIPVYLLQHY 575 (1082)
Q Consensus 497 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 575 (1082)
++.+++++. +..+..+.++.+++++.|+..|++...+.++.+.+..............+.+.|+.+++..++..+++..
T Consensus 14 ~~~~lf~~a~~~D~~Lm~~G~i~a~~~G~~~P~~~ii~g~~~~~~~~~~~~~~~~~~~~~~l~~~~lg~~~~~~~~~q~~ 93 (1228)
T KOG0055|consen 14 SFFKLFRFADRFDYLLMILGSIGAIAHGLGLPLMSIIFGKLTDVLGDNTNKIASSEVSKVALYFVYLGVGVFISGFIQVS 93 (1228)
T ss_pred chHHheeccchhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444432 3345667788999999999999999999988887754332122234566788888999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCccccccCCChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001411 576 FYTLMGEHLTARVRLSMFSAILSNEIGWFDLDENNTGLLISTLAADATLVRSALADRLSIIVQNVALTVTAFVIAFILSW 655 (1082)
Q Consensus 576 ~~~~~~~~~~~~l~~~l~~~~l~~~~~ffd~~~~~~G~il~r~s~D~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 655 (1082)
++.+.+++...++|.+.++++++++++|||. +..|.+.+|+++|++.+++.+++.+..+++.+.+++.++++.|+..|
T Consensus 94 c~~~~geRq~~riR~~yl~~iLrQdi~~fD~--~~~g~~~~~l~~d~~~I~d~~geKvg~~i~~~~~fi~g~ii~F~~~W 171 (1228)
T KOG0055|consen 94 CWMRTGERQTARIRSKYLKAILRQDIGWFDT--NSTGELVTRLSDDIELIQDAIGEKVGNFIQLLATFIAGFVIGFYYGW 171 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCccceeec--ccccceEEEecCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999997 44599999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHccHHHHHHcCcHHHHHHHHHHHHhhHHHHHHHHH
Q 001411 656 RLAAVVAASLPLLIGAFVAEQLFLKGFGGDYNRAYSRATSVAREAIANIRTVAAYGIEKRISIQFASELSQPNKQALLRG 735 (1082)
Q Consensus 656 ~l~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~tIra~~~~~~~~~~~~~~~~~~~~~~~~~~ 735 (1082)
+++++++.++|++++......+.+.+...+.+..++++.+.+.|++.+++|+.+|+.|+...++|.+.++...+...+.+
T Consensus 172 ~Ltlv~l~~~Pli~~~g~~~a~~~~~~t~ke~~~ya~Ag~iaEe~i~~iRTV~af~gq~~e~~ry~~~L~~~~k~gi~~g 251 (1228)
T KOG0055|consen 172 KLTLVMLSFIPLIAIAGGLLARFLSKLTEKEQEAYAKAGSIAEEVISSIRTVYAFNGEKKEIERYSKALENALKFGIKKG 251 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999888888888999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 001411 736 HISGFGYGVSQLLSLCSYALGLWYASVLIKQKGSNFGDIMKSFMVLIITALAVAETLALAPDIVKGSQALGPVFGILYRK 815 (1082)
Q Consensus 736 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~~~~~ 815 (1082)
.+.++..++..++.++.+++.+|+|..++..+..+.|.++.++..+...+..++++......+.++..+..++++.++..
T Consensus 252 ~~~G~~~G~~~~~~~~~~a~~~WyG~~li~~~~~~~g~v~~v~~~vl~g~~sLgqa~p~l~~f~~a~~aa~~I~~~i~~~ 331 (1228)
T KOG0055|consen 252 LFKGLGLGFTFFLLFASYALAFWYGSTLILNGGYNGGDVITVFFSVLIGGMSLGQASPHLSAFAKARAAAYRIFETIDRK 331 (1228)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeehhhhhhhhhccccchHHHhccccchHHHHHHhcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred ccCCCCCCCCcccccccccEEEEeEEEECCCCCCcccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEE
Q 001411 816 TAIQPDDPASKEVTEIKGNIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVL 895 (1082)
Q Consensus 816 ~~~~~~~~~~~~~~~~~g~I~~~~Vs~~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~ 895 (1082)
++.++...........+|.|+|+||+|+||+||+.++|+|+||+|++||+|||||+|||||||++++|.|||+|++|+|+
T Consensus 332 ~~i~~~~~~~~~~~~~~g~ief~nV~FsYPsRpdv~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~RfydP~~G~V~ 411 (1228)
T KOG0055|consen 332 PSIDPYSKGGRVLSSIKGEIEFRNVCFSYPSRPDVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYDPTSGEVL 411 (1228)
T ss_pred CCCCcccccCCcccccccceEEEEEEecCCCCCcchhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCceEE
Confidence 87776542232334578999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ECCccCCCCCHHHHhcceEEEcccCccccccHHHHhccCCCCCCHHHHHHHHHHhcHHHHHhhCcccccccccCCCCCCC
Q 001411 896 IDGYDIRTLNLRSLRRKIGLVQQEPALFSTTIYENIKYGNEDASEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLS 975 (1082)
Q Consensus 896 idG~di~~i~~~~lR~~i~~VpQdp~Lf~gTIreNl~~~~~~~~d~ei~~al~~a~l~~~i~~lp~gldt~v~e~G~~LS 975 (1082)
|||.|+++++.++||++||+|.|||+||++||+|||.+|.|+++++|+.+|++.+++++||.+||+||||.|||+|.+||
T Consensus 412 idG~di~~~~~~~lr~~iglV~QePvlF~~tI~eNI~~G~~dat~~~i~~a~k~ana~~fi~~lp~g~~T~vge~g~qLS 491 (1228)
T KOG0055|consen 412 IDGEDIRNLNLKWLRSQIGLVSQEPVLFATTIRENIRYGKPDATREEIEEAAKAANAHDFILKLPDGYDTLVGERGVQLS 491 (1228)
T ss_pred EcCccchhcchHHHHhhcCeeeechhhhcccHHHHHhcCCCcccHHHHHHHHHHccHHHHHHhhHHhhcccccCCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhccCEEEEEeCCEEEEecCh
Q 001411 976 GGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLMEGRTTIMVAHRLSTIRNADKIAVLQQGKVAEIGSH 1055 (1082)
Q Consensus 976 gGQrQrlaLARAlL~~~~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~~DrI~Vl~~G~ive~G~~ 1055 (1082)
|||||||||||||+|+|+|||||||||+||+++|+.||++|++..+|+|.|+|||||+||+++|+|+||++|+|+|.|+|
T Consensus 492 GGQKQRIAIARalv~~P~ILLLDEaTSaLD~~se~~Vq~ALd~~~~grTTivVaHRLStIrnaD~I~v~~~G~IvE~G~h 571 (1228)
T KOG0055|consen 492 GGQKQRIAIARALVRNPKILLLDEATSALDAESERVVQEALDKASKGRTTIVVAHRLSTIRNADKIAVMEEGKIVEQGTH 571 (1228)
T ss_pred hHHHHHHHHHHHHHhCCCEEEecCcccccCHHHHHHHHHHHHHhhcCCeEEEEeeehhhhhccCEEEEEECCEEEEecCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhccchHHHHHHHhhccC
Q 001411 1056 EQLLRKENGIYKQLIRLQQDKN 1077 (1082)
Q Consensus 1056 ~eLl~~~~g~f~~l~~~~~~~~ 1077 (1082)
+||++++ |.|++|++.|....
T Consensus 572 ~ELi~~~-G~Y~~lv~~Q~~~~ 592 (1228)
T KOG0055|consen 572 DELIALG-GIYSSLVRLQELEK 592 (1228)
T ss_pred HHHHhcc-chHHHHHHHHhhhh
Confidence 9999964 99999999885443
|
|
| >COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-92 Score=852.44 Aligned_cols=517 Identities=34% Similarity=0.552 Sum_probs=490.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccccccCCChhHHHHHHHhhHHHHHHHHH
Q 001411 551 VVDQVALIFVGLAVVTIPVYLLQHYFYTLMGEHLTARVRLSMFSAILSNEIGWFDLDENNTGLLISTLAADATLVRSALA 630 (1082)
Q Consensus 551 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~l~~~~~ffd~~~~~~G~il~r~s~D~~~i~~~~~ 630 (1082)
.+......++++++...++.+++.++..+.+.++...+-.++++|+++.|++||.. +++|++++|+ +|++.|++++.
T Consensus 192 tL~vl~ig~~~~~l~~~~l~~lr~~~~~~~~~rld~~l~~~~~~hll~Lpl~~f~~--r~~Ge~~sR~-~el~~Ir~flt 268 (709)
T COG2274 192 TLTVLAIGLLLAALFEALLRLLRTYLIAHLGKRLDLELSGRFFRHLLRLPLSYFEK--RSVGEIISRV-RELEQIREFLT 268 (709)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHcCcHHHccC--CChhhHHHHH-HHHHHHHHHHH
Confidence 34455666777788888999999999999999999999999999999999999974 7999999998 59999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHccHHHHHHc
Q 001411 631 DRLSIIVQNVALTVTAFVIAFILSWRLAAVVAASLPLLIGAFVAEQLFLKGFGGDYNRAYSRATSVAREAIANIRTVAAY 710 (1082)
Q Consensus 631 ~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~tIra~ 710 (1082)
......+.+++..++.++++++++|.+++++++.+|+.++..++..+++++..++.....++..++..|++.|++|||+.
T Consensus 269 ~~~l~~iiD~~~~~i~l~vm~~ys~~L~li~l~~~~l~~l~~~~~~~~l~~~~~~~~~~~a~~~s~lvE~i~gi~tvK~~ 348 (709)
T COG2274 269 GSILTLIIDLLFALIFLAVMFLYSWKLTLIVLAAIPLNVLITLIFQPLLRRKTRKLIEESAEQQSFLVETIKGIETVKAL 348 (709)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhHHHHHh
Confidence 99999999999999999999999999999999999999999999999999988888888889999999999999999999
Q ss_pred CcHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Q 001411 711 GIEKRISIQFASELSQPNKQALLRGHISGFGYGVSQLLSLCSYALGLWYASVLIKQKGSNFGDIMKSFMVLIITALAVAE 790 (1082)
Q Consensus 711 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 790 (1082)
+.|.++..+|.+.+.+..+..++......+...+..++..+...+.+|+|+.++..+.+|+|.++++.+....+..++..
T Consensus 349 ~~e~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~v~iL~~G~~lVl~~~lTlG~LiAf~~l~~~f~~pi~~ 428 (709)
T COG2274 349 AAEPRFRSQWDNRLAKQVNIGFKTEKLALILNTIKSLLQQLSSVLILWFGAILVLEGELTLGQLVAFNMLAGYFISPITR 428 (709)
T ss_pred hhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcccccCCCCCCCCcccccccccEEEEeEEEECCCCCCcccccceeEEeeCCcEEEEEc
Q 001411 791 TLALAPDIVKGSQALGPVFGILYRKTAIQPDDPASKEVTEIKGNIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVG 870 (1082)
Q Consensus 791 ~~~~~~~~~~~~~a~~ri~~~~~~~~~~~~~~~~~~~~~~~~g~I~~~~Vs~~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG 870 (1082)
+.+.+.++.....+.+|+.++++.++|.+.+.. ....++..|.|+|+||+|+|+.+ ++++|+|+||+|+|||+|||||
T Consensus 429 L~~~~~~~q~~~~~~~rL~dil~~~~E~~~~~~-~~~~~~~~g~I~~~nvsf~y~~~-~~~vL~~isL~I~~Ge~vaIvG 506 (709)
T COG2274 429 LSQLWTDFQQAKVALERLGDILDTPPEQEGDKT-LIHLPKLQGEIEFENVSFRYGPD-DPPVLEDLSLEIPPGEKVAIVG 506 (709)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCcccccccc-cccccccCceEEEEEEEEEeCCC-CcchhhceeEEeCCCCEEEEEC
Confidence 999999999999999999999998877554331 22345678999999999999854 3479999999999999999999
Q ss_pred CCCCCHHHHHHHHhccccCCccEEEECCccCCCCCHHHHhcceEEEcccCccccccHHHHhccCCCCCCHHHHHHHHHHh
Q 001411 871 QSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRKIGLVQQEPALFSTTIYENIKYGNEDASEIELMKATKAA 950 (1082)
Q Consensus 871 ~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR~~i~~VpQdp~Lf~gTIreNl~~~~~~~~d~ei~~al~~a 950 (1082)
+||||||||+|+|.|+|+|++|+|++||+|+++++++.+|++|+|||||++||+|||||||+++.|++++||+++||+.+
T Consensus 507 ~SGsGKSTL~KLL~gly~p~~G~I~~dg~dl~~i~~~~lR~~ig~V~Q~~~Lf~gSI~eNi~l~~p~~~~e~i~~A~~~a 586 (709)
T COG2274 507 RSGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDIDLASLRRQVGYVLQDPFLFSGSIRENIALGNPEATDEEIIEAAQLA 586 (709)
T ss_pred CCCCCHHHHHHHHhcCCCCCCceEEECCEeHHhcCHHHHHhheeEEcccchhhcCcHHHHHhcCCCCCCHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHhhCcccccccccCCCCCCChhHHHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEec
Q 001411 951 NAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLMEGRTTIMVAH 1030 (1082)
Q Consensus 951 ~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlaLARAlL~~~~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaH 1030 (1082)
++|+||.++|.||||+|||+|.+|||||||||+|||||+++|+||||||||||||++||+.|.+.|.+..++||+|+|||
T Consensus 587 g~~~fI~~lP~gy~t~v~E~G~~LSGGQrQrlalARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~~~~T~I~IaH 666 (709)
T COG2274 587 GAHEFIENLPMGYDTPVGEGGANLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLLQILQGRTVIIIAH 666 (709)
T ss_pred CcHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHhccCCCEEEEeCcccccCHhHHHHHHHHHHHHhcCCeEEEEEc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CchhhhccCEEEEEeCCEEEEecChHHHhhhccchHHHHHHHh
Q 001411 1031 RLSTIRNADKIAVLQQGKVAEIGSHEQLLRKENGIYKQLIRLQ 1073 (1082)
Q Consensus 1031 rl~ti~~~DrI~Vl~~G~ive~G~~~eLl~~~~g~f~~l~~~~ 1073 (1082)
|++++++||||+|||+|+|+|+|+|+||++. +|.|+++|+.|
T Consensus 667 Rl~ti~~adrIiVl~~Gkiv~~gs~~ell~~-~g~y~~l~~~q 708 (709)
T COG2274 667 RLSTIRSADRIIVLDQGKIVEQGSHEELLAQ-GGLYARLYQQQ 708 (709)
T ss_pred cchHhhhccEEEEccCCceeccCCHHHHHHh-cChHHHHHhcc
Confidence 9999999999999999999999999999995 99999999866
|
|
| >COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-87 Score=813.52 Aligned_cols=552 Identities=36% Similarity=0.568 Sum_probs=487.3
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCchhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001411 511 YAVLGSVGAILAGMEAPLFALGITHILTAFYSPHDSQIKRVVDQVALIFVGLAVVTIPVYLLQHYFYTLMGEHLTARVRL 590 (1082)
Q Consensus 511 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 590 (1082)
.+.++.++.++........+..+..+++... . .......+...++++.++..++.++..+...+.+.+...++|.
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~----~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~lr~ 89 (567)
T COG1132 15 LLLLAILLLLLSALLSLLLPLLIGRIIDALL-A----DLGELLELLLLLLLLALLGGVLRALQSYLGSRLGQKIVADLRR 89 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-h----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555555555555555544 1 1122233455555666677778888888888888999999999
Q ss_pred HHHHHHHhCCCccccccCCChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001411 591 SMFSAILSNEIGWFDLDENNTGLLISTLAADATLVRSALADRLSIIVQNVALTVTAFVIAFILSWRLAAVVAASLPLLIG 670 (1082)
Q Consensus 591 ~l~~~~l~~~~~ffd~~~~~~G~il~r~s~D~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~p~~~~ 670 (1082)
++++++++.|++||+. +++|++++|+++|++.++..+......+...++..++.+++++..+|.+++++++..|++.+
T Consensus 90 ~~~~~l~~~~~~~~~~--~~~g~l~~~~t~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~ 167 (567)
T COG1132 90 DLFEKLLRLPLSFFDK--AKSGDLISRLTNDVEAVSNLVSTVLVLVFTSILLLIGSLVLLFSLSWRLALILLLILPLLAL 167 (567)
T ss_pred HHHHHHHhCCHHHhCc--CCcchHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 9999999999999985 78999999999999999999998866666678888888999999999999999999999888
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHccHHHHHHcCcHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 001411 671 AFVAEQLFLKGFGGDYNRAYSRATSVAREAIANIRTVAAYGIEKRISIQFASELSQPNKQALLRGHISGFGYGVSQLLSL 750 (1082)
Q Consensus 671 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~tIra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 750 (1082)
......+..++..+..++...+..+.+.|+++|+++||+|+.++...+++.+..+...+...+.....+...++...+..
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (567)
T COG1132 168 VLSLLARKSRKLSRRVREALGELNARLLESLSGIRVIKAFGAEDRELKRFEEANEELRRANLRASRLEALLAPLMLLLSS 247 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88777766677788888888999999999999999999999999999999999888888887777777877788888899
Q ss_pred HHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCCCCCccccc
Q 001411 751 CSYALGLWYASVLIKQKGSNFGDIMKSFMVLIITALAVAETLALAPDIVKGSQALGPVFGILYRKTAIQPDDPASKEVTE 830 (1082)
Q Consensus 751 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~~~~~~~~~~~~~~~~~~~~ 830 (1082)
+...+.++++..++..+.++.|.+..++.+......++.........+..+..+.+|++++++.+++....... ...
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~---~~~ 324 (567)
T COG1132 248 LGTVLVLALGGFLVLSGSLTVGALAAFILYLLRLLTPILQLGEVVSLLQRASAAAERLFELLDEEPEVEDPPDP---LKD 324 (567)
T ss_pred HHHHHHHHHHHHHHHcCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCCCCC---CCC
Confidence 99999999999999999999999998888888888899999999999999999999999999875543222111 234
Q ss_pred ccccEEEEeEEEECCCCCCcccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCccCCCCCHHHHh
Q 001411 831 IKGNIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLR 910 (1082)
Q Consensus 831 ~~g~I~~~~Vs~~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR 910 (1082)
..|.|+|+||+|+|++ ++++|+|+||+|+|||++||||||||||||++++|+|+|+|++|+|+|||+||+++++++||
T Consensus 325 ~~~~I~f~~vsf~y~~--~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~idg~dI~~i~~~~lr 402 (567)
T COG1132 325 TIGSIEFENVSFSYPG--KKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDSLR 402 (567)
T ss_pred CCCeEEEEEEEEEcCC--CCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCEehhhcCHHHHH
Confidence 5678999999999972 56899999999999999999999999999999999999999999999999999999999999
Q ss_pred cceEEEcccCccccccHHHHhccCCCCCCHHHHHHHHHHhcHHHHHhhCcccccccccCCCCCCChhHHHHHHHHHHHcc
Q 001411 911 RKIGLVQQEPALFSTTIYENIKYGNEDASEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILK 990 (1082)
Q Consensus 911 ~~i~~VpQdp~Lf~gTIreNl~~~~~~~~d~ei~~al~~a~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlaLARAlL~ 990 (1082)
++|++|||||+||+|||++||++|.++++|||+++|++.++++|||+++|+||||.|||+|.+||||||||||||||+++
T Consensus 403 ~~I~~V~Qd~~LF~~TI~~NI~~g~~~at~eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSgGQrQrlaiARall~ 482 (567)
T COG1132 403 KRIGIVSQDPLLFSGTIRENIALGRPDATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLAIARALLR 482 (567)
T ss_pred HhccEEcccceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCcccccceecCCCccCCHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEeeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhccCEEEEEeCCEEEEecChHHHhhhccchHHHHH
Q 001411 991 NPSILLLDEATSALDTASENLIQEALDKLMEGRTTIMVAHRLSTIRNADKIAVLQQGKVAEIGSHEQLLRKENGIYKQLI 1070 (1082)
Q Consensus 991 ~~~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~~DrI~Vl~~G~ive~G~~~eLl~~~~g~f~~l~ 1070 (1082)
+|||||||||||+||++||+.|++++++..+++|+|+||||++|+++||+|+|||+|+|+|+|+|+||++ .+|.|++||
T Consensus 483 ~~~ILILDEaTSalD~~tE~~I~~~l~~l~~~rT~iiIaHRlsti~~aD~IiVl~~G~i~e~G~h~eLl~-~~g~y~~l~ 561 (567)
T COG1132 483 NPPILILDEATSALDTETEALIQDALKKLLKGRTTLIIAHRLSTIKNADRIIVLDNGRIVERGTHEELLA-KGGLYARLY 561 (567)
T ss_pred CCCEEEEeccccccCHHhHHHHHHHHHHHhcCCEEEEEeccHhHHHhCCEEEEEECCEEEEecCHHHHHH-cCCHHHHHH
Confidence 9999999999999999999999999998888999999999999999999999999999999999999998 499999999
Q ss_pred HHhhc
Q 001411 1071 RLQQD 1075 (1082)
Q Consensus 1071 ~~~~~ 1075 (1082)
+.|..
T Consensus 562 ~~~~~ 566 (567)
T COG1132 562 QAQGG 566 (567)
T ss_pred HHhhc
Confidence 98753
|
|
| >KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-89 Score=782.78 Aligned_cols=440 Identities=46% Similarity=0.706 Sum_probs=418.3
Q ss_pred chHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhc
Q 001411 2 QTGHALRYLSQFFVGFAVGFTSVWQLTLLTLAVVPLIAVAGGAYTITMSTLSEKGEAAYGEAGKVAEEIISQVRAVYAFV 81 (1082)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~ 81 (1082)
++...+++..+.++++.+||+++|+|+++.++.+|+++++..+++++.++..++.|++.+++++..+|.+++|||||+|+
T Consensus 265 nls~~lR~~~~~~g~~~~M~~~S~~Ltlv~~i~~P~v~~~~~~yG~~~rklS~~~Q~a~A~a~~vaeE~ls~~rTVRsfa 344 (716)
T KOG0058|consen 265 NLSDGLRNLVQGFGGLGFMFSLSWRLTLVTLIVVPIVALVAKIYGKYLRKLSKQTQDALARANQVAEEVLSAMRTVRSFA 344 (716)
T ss_pred HHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhh
Confidence 46778999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHH
Q 001411 82 GEAKAIESYSHSLKEALKQGKKSGVAKGIGVGLTYGLLFCAWALLLWYAGILVRHGDTNGGKAFTTIINVIFSGFALGQA 161 (1082)
Q Consensus 82 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~l~~g~~~~~~~~~~~~~~~l~~~ 161 (1082)
.|+.+.+||.+..++..+..+|.....+.+.+...+...+..+.++++|++++.+|.+|.|.+.+++++......++..+
T Consensus 345 ~E~~E~~ry~~~l~~~~~i~~k~a~a~~~f~~~~~~~~~~~~~siL~~Gg~Lv~~g~mt~g~L~sFllY~~~~g~sl~~l 424 (716)
T KOG0058|consen 345 AEEQEVKRYNKKLREVLKLSKKEAVAYGIFFGSTNLLGNLAVLSILFYGGHLVLTGSLTSGALSSFLLYQVQLGSSLSGL 424 (716)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhHhHhHHHHHHhHHHHHHHHhccchhhcCccchhHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999888888888899999999999999999999999999999999988999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCCCCcEEEEEEEEECCCCCC-ccccceeEEEeCCCEEEEEc
Q 001411 162 APNLAAIAKGKAAAANIISIIKENSHSSERPGDDGITLPKLAGQIEFSEVCFAYPSRPH-MVFENLNFSVDAGKTFAFVG 240 (1082)
Q Consensus 162 ~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~-~~l~~i~l~i~~g~~~~ivG 240 (1082)
...+..++++..|.+|+++++|.+|..+.. ....+....+.|+|+||+|+||.++. ++|+|+||+|+|||.||+||
T Consensus 425 s~~ys~lmkgvGAs~rvFel~dr~P~i~~~---G~~~p~~~~G~IeF~~VsFaYP~Rp~~~Vlk~lsfti~pGe~vALVG 501 (716)
T KOG0058|consen 425 SSFYSELMKGVGASERVFELMDRKPRIPLT---GTLAPDHLQGVIEFEDVSFAYPTRPDVPVLKNLSFTIRPGEVVALVG 501 (716)
T ss_pred HHHHHHHHHhcchHHHHHHHhccCCCCCCC---CccccccccceEEEEEeeeecCCCCCchhhcCceeeeCCCCEEEEEC
Confidence 999999999999999999999988775521 11122256789999999999998865 49999999999999999999
Q ss_pred CCCCcHHHHHHHHHhCCCCCCcEEEECCeeCCCCCHHHHhhhceEEccCCCcChhcHHHHHhcCCCCCCHHHHHHHHHHh
Q 001411 241 PSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNILLGKEDASMDRVIEAAKAA 320 (1082)
Q Consensus 241 ~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ti~~ni~~g~~~~~~~~~~~~~~~~ 320 (1082)
||||||||++++|.++|+|++|+|.+||+||+++++.+||++||+|.|||.||++||+|||.||.++.++|++..|++.+
T Consensus 502 PSGsGKSTiasLL~rfY~PtsG~IllDG~~i~~~~~~~lr~~Ig~V~QEPvLFs~sI~eNI~YG~~~~t~e~i~~AAk~A 581 (716)
T KOG0058|consen 502 PSGSGKSTIASLLLRFYDPTSGRILLDGVPISDINHKYLRRKIGLVGQEPVLFSGSIRENIAYGLDNATDEEIEAAAKMA 581 (716)
T ss_pred CCCCCHHHHHHHHHHhcCCCCCeEEECCeehhhcCHHHHHHHeeeeeccceeecccHHHHHhcCCCCCCHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHhcCCCCccccccCCCCCCChHHHHHHHHHHhcccCCCeeEEeCcccCCCHHHHHHHHHHHHHHcCCCeEEEEcc
Q 001411 321 NAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAH 400 (1082)
Q Consensus 321 ~~~~~i~~lp~g~~t~~g~~g~~LSgGqkqri~lARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~vtH 400 (1082)
++|+||.++|+||+|.+||+|.+|||||||||||||||++||.||||||+|||||+++|..++++|.+..+++|||+|+|
T Consensus 582 Nah~FI~~~p~gY~T~VGEkG~qLSGGQKQRIAIARALlr~P~VLILDEATSALDaeSE~lVq~aL~~~~~~rTVlvIAH 661 (716)
T KOG0058|consen 582 NAHEFITNFPDGYNTVVGEKGSQLSGGQKQRIAIARALLRNPRVLILDEATSALDAESEYLVQEALDRLMQGRTVLVIAH 661 (716)
T ss_pred ChHHHHHhCccccccccCCccccccchHHHHHHHHHHHhcCCCEEEEechhhhcchhhHHHHHHHHHHhhcCCeEEEEeh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccccccCCEEEEEeCCEEEEecCchhhhhcC-chhHHHHHhhhc
Q 001411 401 RLSTVRDVDTIMVLKNGQVVESGTHVDLISKG-GEYAALVNLQSS 444 (1082)
Q Consensus 401 ~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~-~~~~~~~~~~~~ 444 (1082)
|++++++||+|+|+++|+++|.|+|+||+++. |.|.++++.|..
T Consensus 662 RLSTV~~Ad~Ivvi~~G~V~E~G~h~eLl~~~~gly~~Lv~~q~~ 706 (716)
T KOG0058|consen 662 RLSTVRHADQIVVIDKGRVVEMGTHDELLSKPNGLYAKLVQRQLD 706 (716)
T ss_pred hhhHhhhccEEEEEcCCeEEecccHHHHhhCcccHHHHHHHHhcc
Confidence 99999999999999999999999999999997 899999987654
|
|
| >PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-85 Score=806.96 Aligned_cols=566 Identities=21% Similarity=0.292 Sum_probs=473.8
Q ss_pred HHHHHHhcchhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCchhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001411 499 WELLKLNAAEWPYAVLGSVGAILAGMEAPLFALGITHILTAFYSPHDSQIKRVVDQVALIFVGLAVVTIPVYLLQHYFYT 578 (1082)
Q Consensus 499 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 578 (1082)
.+++.+.+++++.+.++.++.++..+.....++.+..+++.....+. +. .....+..+++++.++..++.+++.++..
T Consensus 11 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (588)
T PRK11174 11 RWLKQQSKPAKRWLNLSILLGFLSGLLLIAQAWLLATILQALIIENI-PR-EALLPPFILLILLFVLRALLAWLRERVGF 88 (588)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-ch-hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666777777777777777666666667777776665432111 11 11223444555566677788888889999
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCccccccCCChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001411 579 LMGEHLTARVRLSMFSAILSNEIGWFDLDENNTGLLISTLAADATLVRSALADRLSIIVQNVALTVTAFVIAFILSWRLA 658 (1082)
Q Consensus 579 ~~~~~~~~~l~~~l~~~~l~~~~~ffd~~~~~~G~il~r~s~D~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 658 (1082)
+.+.+...++|.++++++++.|++||+. +++|++++|+++|++.+++.+...+..++..++.+++.++++++++|.++
T Consensus 89 ~~~~~~~~~lr~~~~~~ll~~~~~~~~~--~~~g~l~s~~~~dv~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~ 166 (588)
T PRK11174 89 KAGQHIRQQIRQQVLDKLQQLGPAWIQG--KPAGSWATLVLEQVEDMHDFYARYLPQMALAVLVPLLILIAVFPINWAAG 166 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCchhhcc--CCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999974 78999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHccHHHHHHcCcHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 001411 659 AVVAASLPLLIGAFVAEQLFLKGFGGDYNRAYSRATSVAREAIANIRTVAAYGIEKRISIQFASELSQPNKQALLRGHIS 738 (1082)
Q Consensus 659 ~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~tIra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 738 (1082)
+++++++|++++......+..++..++.++...+..+.+.|.++|+++||+|++|+.+.++|.+..++..+...+..+..
T Consensus 167 l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (588)
T PRK11174 167 LILLGTAPLIPLFMALVGMGAADANRRNFLALARLSGHFLDRLRGLETLRLFNRGEAETESIRSASEDFRQRTMEVLRMA 246 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999888877777777777777778888889999999999999999999999999999999998888877776666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001411 739 GFGYGVSQLLSLCSYALGLWYASVLIKQKGSNFGDI---------MKSFMVLIITALAVAETLALAPDIVKGSQALGPVF 809 (1082)
Q Consensus 739 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~ 809 (1082)
.+...+...+..+..++..+++...+ .|.+++|.+ +.++.+......++..+...+..+..+..+.+|+.
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~t~G~l~~~~~~~~~~~~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~ 325 (588)
T PRK11174 247 FLSSAVLEFFASISIALVAVYFGFSY-LGELNFGHYGTGVTLFAGFFVLILAPEFYQPLRDLGTFYHAKAQAVGAAESLV 325 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-hcccccccccccchHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666555555544444444443333 366776653 11112223345677788888889999999999999
Q ss_pred HhhcccccCCCCCCCCcccccccccEEEEeEEEECCCCCCcccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccC
Q 001411 810 GILYRKTAIQPDDPASKEVTEIKGNIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDP 889 (1082)
Q Consensus 810 ~~~~~~~~~~~~~~~~~~~~~~~g~I~~~~Vs~~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p 889 (1082)
++++.+++.++.. ....+.+..+.|+|+||+|.|++ ++++|+|+||+|+|||++||||+||||||||+++|+|+| |
T Consensus 326 ~~l~~~~~~~~~~-~~~~~~~~~~~i~~~~vsf~~~~--~~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p 401 (588)
T PRK11174 326 TFLETPLAHPQQG-EKELASNDPVTIEAEDLEILSPD--GKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-P 401 (588)
T ss_pred HHHcCCCcccCCC-ccccCCCCCceEEEEeeEEeccC--CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-C
Confidence 9987654322111 10111123457999999988762 457999999999999999999999999999999999999 9
Q ss_pred CccEEEECCccCCCCCHHHHhcceEEEcccCccccccHHHHhccCCCCCCHHHHHHHHHHhcHHHHHhhCcccccccccC
Q 001411 890 ISGTVLIDGYDIRTLNLRSLRRKIGLVQQEPALFSTTIYENIKYGNEDASEIELMKATKAANAHGFISRMPEGYQSHVGD 969 (1082)
Q Consensus 890 ~~G~I~idG~di~~i~~~~lR~~i~~VpQdp~Lf~gTIreNl~~~~~~~~d~ei~~al~~a~l~~~i~~lp~gldt~v~e 969 (1082)
++|+|.+||+|+++++.+++|++|+||||||+||+|||||||.++.|+++|+|+++|++.++++++|+++|+||||.|||
T Consensus 402 ~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~LF~~TI~eNI~~g~~~~~~eei~~al~~a~l~~~i~~lp~G~dT~vge 481 (588)
T PRK11174 402 YQGSLKINGIELRELDPESWRKHLSWVGQNPQLPHGTLRDNVLLGNPDASDEQLQQALENAWVSEFLPLLPQGLDTPIGD 481 (588)
T ss_pred CCcEEEECCEecccCCHHHHHhheEEecCCCcCCCcCHHHHhhcCCCCCCHHHHHHHHHHhCHHHHHHhccccccccccc
Confidence 99999999999999999999999999999999999999999999988999999999999999999999999999999999
Q ss_pred CCCCCChhHHHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhccCEEEEEeCCEE
Q 001411 970 RGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLMEGRTTIMVAHRLSTIRNADKIAVLQQGKV 1049 (1082)
Q Consensus 970 ~G~~LSgGQrQrlaLARAlL~~~~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~~DrI~Vl~~G~i 1049 (1082)
+|.+||||||||||||||++++|+|||||||||+||++||+.|+++|++..+++|+|+||||++++.+||+|+||++|+|
T Consensus 482 ~G~~LSGGQrQRialARAll~~~~IliLDE~TSaLD~~te~~i~~~l~~~~~~~TvIiItHrl~~i~~aD~Iivl~~G~i 561 (588)
T PRK11174 482 QAAGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAASRRQTTLMVTHQLEDLAQWDQIWVMQDGQI 561 (588)
T ss_pred CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhCCCEEEEEecChHHHHhCCEEEEEeCCeE
Confidence 99999999999999999999999999999999999999999999999998889999999999999999999999999999
Q ss_pred EEecChHHHhhhccchHHHHHHHhh
Q 001411 1050 AEIGSHEQLLRKENGIYKQLIRLQQ 1074 (1082)
Q Consensus 1050 ve~G~~~eLl~~~~g~f~~l~~~~~ 1074 (1082)
+|.|+|+||++ ++|.|+++++.|.
T Consensus 562 ~e~G~~~eL~~-~~~~y~~l~~~q~ 585 (588)
T PRK11174 562 VQQGDYAELSQ-AGGLFATLLAHRQ 585 (588)
T ss_pred eecCCHHHHHh-cchHHHHHHHHhh
Confidence 99999999998 5899999998765
|
|
| >TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-85 Score=813.30 Aligned_cols=564 Identities=32% Similarity=0.508 Sum_probs=495.7
Q ss_pred hHHHHHHHhcchhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCchhhHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001411 497 SIWELLKLNAAEWPYAVLGSVGAILAGMEAPLFALGITHILTAFYSPHDSQIKRVVDQVALIFVGLAVVTIPVYLLQHYF 576 (1082)
Q Consensus 497 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 576 (1082)
.+++++++.++.++++...+++.++..+.....++....+++........ ........+++++.++..++.+++.++
T Consensus 148 ~~~~l~~~~~~~~~~l~~~~~~~~~~~l~~~~~p~~~~~iid~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~~~~ 224 (711)
T TIGR00958 148 LLFRLLGLSGRDWPWLISAFVFLTLSSLGEMFIPFYTGRVIDTLGGDKGP---PALASAIFFMCLLSIASSVSAGLRGGS 224 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666677777777777666666666666677777777655432211 112223344555566677778888889
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCccccccCCChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001411 577 YTLMGEHLTARVRLSMFSAILSNEIGWFDLDENNTGLLISTLAADATLVRSALADRLSIIVQNVALTVTAFVIAFILSWR 656 (1082)
Q Consensus 577 ~~~~~~~~~~~l~~~l~~~~l~~~~~ffd~~~~~~G~il~r~s~D~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 656 (1082)
+.+.+.++..++|.+++++++++|++||+. +++|++++|+++|++.+++.+...+..++.+++.+++.+++++.++|.
T Consensus 225 ~~~~~~~~~~~lr~~l~~~ll~~~~~~f~~--~~~G~i~srl~~Di~~i~~~~~~~~~~~l~~~~~~i~~~~~l~~~s~~ 302 (711)
T TIGR00958 225 FNYTMARINLRIREDLFRSLLRQDLGFFDE--NKTGELTSRLSSDTQTMSRSLSLNVNVLLRNLVMLLGLLGFMLWLSPR 302 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCHHHHcC--CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 999999999999999999999999999985 789999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHccHHHHHHcCcHHHHHHHHHHHHhhHHHHHHHHHH
Q 001411 657 LAAVVAASLPLLIGAFVAEQLFLKGFGGDYNRAYSRATSVAREAIANIRTVAAYGIEKRISIQFASELSQPNKQALLRGH 736 (1082)
Q Consensus 657 l~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~tIra~~~~~~~~~~~~~~~~~~~~~~~~~~~ 736 (1082)
+++++++.+|+.+++.....++.++..++.++...+..+++.|+++|+++||+|+.|+.+.++|.+..++..+...+...
T Consensus 303 l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 382 (711)
T TIGR00958 303 LTMVTLINLPLVFLAEKVFGKRYQLLSEELQEAVAKANQVAEEALSGMRTVRSFAAEEGEASRFKEALEETLQLNKRKAL 382 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999888888888888888888888888899999999999999999999999999999999998888877777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 001411 737 ISGFGYGVSQLLSLCSYALGLWYASVLIKQKGSNFGDIMKSFMVLIITALAVAETLALAPDIVKGSQALGPVFGILYRKT 816 (1082)
Q Consensus 737 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~~~~~~ 816 (1082)
.......+...+..+..++.+++|.+++..|.++.|+++++..+......++..+...+..+.++..+.+|++++++.++
T Consensus 383 ~~~~~~~~~~~~~~~~~~~il~~g~~lv~~g~it~G~lva~~~~~~~l~~~l~~l~~~~~~~~~~~~a~~ri~~~l~~~~ 462 (711)
T TIGR00958 383 AYAGYLWTTSVLGMLIQVLVLYYGGQLVLTGKVSSGNLVSFLLYQEQLGEAVRVLSYVYSGMMQAVGASEKVFEYLDRKP 462 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 76766666777777777888899999999999999999999888888999999999999999999999999999998765
Q ss_pred cCCCCCCCCcccccccccEEEEeEEEECCCCCCcccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEE
Q 001411 817 AIQPDDPASKEVTEIKGNIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLI 896 (1082)
Q Consensus 817 ~~~~~~~~~~~~~~~~g~I~~~~Vs~~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~i 896 (1082)
+.+... ...+++..|.|+|+||+|+||++++.++|+|+||+|+|||++|||||||||||||+++|+|+|+|++|+|++
T Consensus 463 ~~~~~~--~~~~~~~~~~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~i 540 (711)
T TIGR00958 463 NIPLTG--TLAPLNLEGLIEFQDVSFSYPNRPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLL 540 (711)
T ss_pred CCCCCC--CCCCCCCCCeEEEEEEEEECCCCCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEE
Confidence 433211 111224567899999999998665678999999999999999999999999999999999999999999999
Q ss_pred CCccCCCCCHHHHhcceEEEcccCccccccHHHHhccCCCCCCHHHHHHHHHHhcHHHHHhhCcccccccccCCCCCCCh
Q 001411 897 DGYDIRTLNLRSLRRKIGLVQQEPALFSTTIYENIKYGNEDASEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSG 976 (1082)
Q Consensus 897 dG~di~~i~~~~lR~~i~~VpQdp~Lf~gTIreNl~~~~~~~~d~ei~~al~~a~l~~~i~~lp~gldt~v~e~G~~LSg 976 (1082)
||+|+++++.+++|++|+||||||++|+|||||||.++.++.+|+++++|++.++++++++++|+||||.+||+|.+|||
T Consensus 541 dg~~i~~~~~~~lr~~i~~v~Q~~~lF~gTIreNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSG 620 (711)
T TIGR00958 541 DGVPLVQYDHHYLHRQVALVGQEPVLFSGSVRENIAYGLTDTPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSG 620 (711)
T ss_pred CCEEHHhcCHHHHHhhceEEecCccccccCHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCCCccCCcccCCCCcCCH
Confidence 99999999999999999999999999999999999999888999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhccCEEEEEeCCEEEEecChH
Q 001411 977 GQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLMEGRTTIMVAHRLSTIRNADKIAVLQQGKVAEIGSHE 1056 (1082)
Q Consensus 977 GQrQrlaLARAlL~~~~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~~DrI~Vl~~G~ive~G~~~ 1056 (1082)
|||||||||||++++|+|||||||||+||++||+.|++ ....+++|+|+||||++++..||+|+||++|+|+|+|+|+
T Consensus 621 GQkQRlalARALl~~p~ILILDEpTSaLD~~te~~i~~--~~~~~~~TvIiItHrl~~i~~aD~IivL~~G~ive~Gt~~ 698 (711)
T TIGR00958 621 GQKQRIAIARALVRKPRVLILDEATSALDAECEQLLQE--SRSRASRTVLLIAHRLSTVERADQILVLKKGSVVEMGTHK 698 (711)
T ss_pred HHHHHHHHHHHHhcCCCEEEEEccccccCHHHHHHHHH--hhccCCCeEEEEeccHHHHHhCCEEEEEECCEEEEeeCHH
Confidence 99999999999999999999999999999999999999 3345789999999999999999999999999999999999
Q ss_pred HHhhhccchHHHHH
Q 001411 1057 QLLRKENGIYKQLI 1070 (1082)
Q Consensus 1057 eLl~~~~g~f~~l~ 1070 (1082)
||++ ++|.|++|+
T Consensus 699 eL~~-~~~~y~~lv 711 (711)
T TIGR00958 699 QLME-DQGCYKHLV 711 (711)
T ss_pred HHHh-CCCchHhcC
Confidence 9998 578999874
|
|
| >TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-83 Score=801.20 Aligned_cols=553 Identities=27% Similarity=0.373 Sum_probs=483.6
Q ss_pred chhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCchhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001411 507 AEWPYAVLGSVGAILAGMEAPLFALGITHILTAFYSPHDSQIKRVVDQVALIFVGLAVVTIPVYLLQHYFYTLMGEHLTA 586 (1082)
Q Consensus 507 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 586 (1082)
+.++.+...++..++..+.....++.+..+++....... ......+.++++++.++..++.+++.++..+.+.++..
T Consensus 133 ~~~~~~~~~~~~~~~~~~~~l~~p~~~~~iid~v~~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (686)
T TIGR03797 133 GARRDLLAILAMGLLGTLLGMLVPIATGILIGTAIPDAD---RSLLVQIALALLAAAVGAAAFQLAQSLAVLRLETRMDA 209 (686)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444455555554432211 11223345556666677788888999999999999999
Q ss_pred HHHHHHHHHHHhCCCccccccCCChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001411 587 RVRLSMFSAILSNEIGWFDLDENNTGLLISTLAADATLVRSALADRLSIIVQNVALTVTAFVIAFILSWRLAAVVAASLP 666 (1082)
Q Consensus 587 ~l~~~l~~~~l~~~~~ffd~~~~~~G~il~r~s~D~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~p 666 (1082)
++|.++++++++.|++||+. +++|++++|++ |++.+++.+...+...+.+++.+++++++++.++|.+++++++++|
T Consensus 210 ~l~~~~~~~ll~~~~~~~~~--~~~g~~~~r~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~~~~ 286 (686)
T TIGR03797 210 SLQAAVWDRLLRLPVSFFRQ--YSTGDLASRAM-GISQIRRILSGSTLTTLLSGIFALLNLGLMFYYSWKLALVAVALAL 286 (686)
T ss_pred HHHHHHHHHHHcCCHHHHCC--CChhHHHHHHh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999974 79999999997 7999999998888888888888888888999999999999999999
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHccHHHHHHcCcHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 001411 667 LLIGAFVAEQLFLKGFGGDYNRAYSRATSVAREAIANIRTVAAYGIEKRISIQFASELSQPNKQALLRGHISGFGYGVSQ 746 (1082)
Q Consensus 667 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~tIra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 746 (1082)
+.+++.++..+..++..++..+...+..+++.|+++|+++||++|.++++.++|.+..++..+...+......+...+..
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (686)
T TIGR03797 287 VAIAVTLVLGLLQVRKERRLLELSGKISGLTVQLINGISKLRVAGAENRAFARWAKLFSRQRKLELSAQRIENLLTVFNA 366 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888877888777777888888888899999999999999999999999999999999999999998888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCCCCCc
Q 001411 747 LLSLCSYALGLWYASVLIKQKGSNFGDIMKSFMVLIITALAVAETLALAPDIVKGSQALGPVFGILYRKTAIQPDDPASK 826 (1082)
Q Consensus 747 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~~~~~~~~~~~~~~~~ 826 (1082)
.+..+...+.+|+|.+++..|.++.|.++++.++......++..+...+..+..+..+.+|+.++++.+++.+... .
T Consensus 367 ~i~~~~~~~il~~g~~lv~~g~ltiG~lva~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~~~---~ 443 (686)
T TIGR03797 367 VLPVLTSAALFAAAISLLGGAGLSLGSFLAFNTAFGSFSGAVTQLSNTLISILAVIPLWERAKPILEALPEVDEAK---T 443 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCc---C
Confidence 8888888999999999999999999999999888888889999999999999999999999999987654432111 1
Q ss_pred ccccccccEEEEeEEEECCCCCCcccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCccCCCCCH
Q 001411 827 EVTEIKGNIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNL 906 (1082)
Q Consensus 827 ~~~~~~g~I~~~~Vs~~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~ 906 (1082)
.+.+..|.|+|+||+|+|+.. ++++|+|+||+|+|||++||||+||||||||+++|+|+|+|++|+|++||+|++++++
T Consensus 444 ~~~~~~~~I~~~nvsf~Y~~~-~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~ 522 (686)
T TIGR03797 444 DPGKLSGAIEVDRVTFRYRPD-GPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLAGLDV 522 (686)
T ss_pred CCCCCCceEEEEEEEEEcCCC-CccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcCcCCH
Confidence 112345789999999999733 4579999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcceEEEcccCccccccHHHHhccCCCCCCHHHHHHHHHHhcHHHHHhhCcccccccccCCCCCCChhHHHHHHHHH
Q 001411 907 RSLRRKIGLVQQEPALFSTTIYENIKYGNEDASEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIAR 986 (1082)
Q Consensus 907 ~~lR~~i~~VpQdp~Lf~gTIreNl~~~~~~~~d~ei~~al~~a~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlaLAR 986 (1082)
+++|++|+||||||++|+|||||||.++.+ ++|+++++|++.++++++|+++|+||||++||+|.+|||||||||+|||
T Consensus 523 ~~lr~~i~~v~Q~~~lf~gTI~eNi~~~~~-~~~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGGQrQRialAR 601 (686)
T TIGR03797 523 QAVRRQLGVVLQNGRLMSGSIFENIAGGAP-LTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIAR 601 (686)
T ss_pred HHHHhccEEEccCCccCcccHHHHHhcCCC-CCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHH
Confidence 999999999999999999999999999888 9999999999999999999999999999999999999999999999999
Q ss_pred HHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhccCEEEEEeCCEEEEecChHHHhhhccchH
Q 001411 987 AILKNPSILLLDEATSALDTASENLIQEALDKLMEGRTTIMVAHRLSTIRNADKIAVLQQGKVAEIGSHEQLLRKENGIY 1066 (1082)
Q Consensus 987 AlL~~~~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~~DrI~Vl~~G~ive~G~~~eLl~~~~g~f 1066 (1082)
|++++|+|||||||||+||++||+.|++.|++. ++|+|+||||++++..||+|+||++|+|+|.|+|+||++ ++|.|
T Consensus 602 All~~p~iLiLDEpTS~LD~~te~~i~~~L~~~--~~T~IiItHr~~~i~~~D~Iivl~~G~iv~~G~~~~Ll~-~~~~y 678 (686)
T TIGR03797 602 ALVRKPRILLFDEATSALDNRTQAIVSESLERL--KVTRIVIAHRLSTIRNADRIYVLDAGRVVQQGTYDELMA-REGLF 678 (686)
T ss_pred HHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHh--CCeEEEEecChHHHHcCCEEEEEECCEEEEECCHHHHHh-CCcHH
Confidence 999999999999999999999999999999986 689999999999999999999999999999999999998 68999
Q ss_pred HHHHHHh
Q 001411 1067 KQLIRLQ 1073 (1082)
Q Consensus 1067 ~~l~~~~ 1073 (1082)
++|++.|
T Consensus 679 ~~l~~~q 685 (686)
T TIGR03797 679 AQLARRQ 685 (686)
T ss_pred HHHHHhc
Confidence 9999865
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif |
| >COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-83 Score=726.33 Aligned_cols=550 Identities=25% Similarity=0.368 Sum_probs=486.4
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHhcCCCchhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001411 517 VGAILAGMEAPLFALGITHILTAFYSPHDSQIKRVVDQVALIFVGLAVVTIPVYLLQHYFYTLMGEHLTARVRLSMFSAI 596 (1082)
Q Consensus 517 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 596 (1082)
++.++.++......+++...+...+.... ......+...++++.++..+..+.+......++.++...||.++++++
T Consensus 7 ll~~l~~i~~i~qa~llA~~l~~l~~~~~---~~~l~~~~~~l~~~~~lRa~l~~~~~~~~~~aa~~~~~~LR~~~l~~l 83 (559)
T COG4988 7 LLAVLSGIAIIAQAALLADILTKLIEGQL---FQSLLPLLILLLIALVLRAFLAWLRERLGYRAAAKVRASLRQLVLDKL 83 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccc---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555556666666666654421 223445667777788888899999999999999999999999999999
Q ss_pred HhCCCccccccCCChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001411 597 LSNEIGWFDLDENNTGLLISTLAADATLVRSALADRLSIIVQNVALTVTAFVIAFILSWRLAAVVAASLPLLIGAFVAEQ 676 (1082)
Q Consensus 597 l~~~~~ffd~~~~~~G~il~r~s~D~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~p~~~~~~~~~~ 676 (1082)
.+.+..|-.. .|+|...+..+..++.++.++...+++.+.+.+.++..++.+++++|..+++++++.|++.+++++..
T Consensus 84 ~~~gp~~~~~--~~~g~~atl~~egve~l~~Y~~ryLPq~~~~~ivp~~i~i~v~~~~w~aalIllit~PlIPlfMilvg 161 (559)
T COG4988 84 AKLGPAFIAQ--KPAGSAATLALEGIEQLEPYYARYLPQMFLSAIVPLLILIAIFFFNWAAALILLITAPLIPLFMILVG 161 (559)
T ss_pred HhCChhhhcC--CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999998764 79999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHccHHHHHHcCcHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001411 677 LFLKGFGGDYNRAYSRATSVAREAIANIRTVAAYGIEKRISIQFASELSQPNKQALLRGHISGFGYGVSQLLSLCSYALG 756 (1082)
Q Consensus 677 ~~~~~~~~~~~~~~~~~~~~~~e~l~g~~tIra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 756 (1082)
...+..+++....+.+.+++|.+.++|+.|+|+||..++..++..+..++..+..++..+..-....+..++.++..++.
T Consensus 162 ~~a~~~s~~~~~~~~~ls~~FLD~LrGL~TLr~f~~~~~~~~~i~~~se~fR~~TM~vLriAflSs~vLeffa~lsiAlv 241 (559)
T COG4988 162 LAAKDASEKQFSALARLSGHFLDRLRGLETLRAFGRTEATEERIRKDSEDFRKATMSVLRIAFLSSAVLEFFAYLSIALV 241 (559)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHhcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999888999999999999999999999999999999999999999999999999988888777888888888777665
Q ss_pred H-HHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCCCCCcccccccccE
Q 001411 757 L-WYASVLIKQKGSNFGDIMKSFMVLIITALAVAETLALAPDIVKGSQALGPVFGILYRKTAIQPDDPASKEVTEIKGNI 835 (1082)
Q Consensus 757 ~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~~~~~~~~~~~~~~~~~~~~~~g~I 835 (1082)
. ++|..++..|.+++...+.++...--+..++....+.+..-..+..+.+.++.+++.+.+..+........+.....|
T Consensus 242 Av~~g~~ll~~G~ltl~~~l~~LiLAPEff~PlR~lGs~fH~~~~g~aa~d~i~~~l~~~~~~~~~~~~~~~~~~~~~ei 321 (559)
T COG4988 242 AVYIGFRLLGEGDLTLFAGLFVLILAPEFFQPLRDLGSFFHAAAAGEAAADKLFTLLESPVATPGSGEKAEVANEPPIEI 321 (559)
T ss_pred HHHHHHHHHccCCccHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhcCCCCCCCCccccccccCCCcee
Confidence 4 445555444788887777777777778889999999999999998999999999877654333221111112223346
Q ss_pred EEEeEEEECCCCCCcccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCccCCCCCHHHHhcceEE
Q 001411 836 ELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRKIGL 915 (1082)
Q Consensus 836 ~~~~Vs~~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR~~i~~ 915 (1082)
+++|++|+||+ ++++++|+||+++||+++||||+||||||||+++|+|+++|++|+|.+||+|+++++.+.||+++++
T Consensus 322 ~~~~l~~~y~~--g~~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l~~l~~~~~~k~i~~ 399 (559)
T COG4988 322 SLENLSFRYPD--GKPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQISW 399 (559)
T ss_pred eecceEEecCC--CCcccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCccccccCHHHHHhHeee
Confidence 66799999984 3389999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcccCccccccHHHHhccCCCCCCHHHHHHHHHHhcHHHHHhhCcccccccccCCCCCCChhHHHHHHHHHHHccCCCEE
Q 001411 916 VQQEPALFSTTIYENIKYGNEDASEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSIL 995 (1082)
Q Consensus 916 VpQdp~Lf~gTIreNl~~~~~~~~d~ei~~al~~a~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlaLARAlL~~~~IL 995 (1082)
|||+|++|+|||||||.+++++.+|++++++++++++.+|+.. |+|+||.+||+|.+|||||+||++||||++++++++
T Consensus 400 v~Q~p~lf~gTireNi~l~~~~~s~e~i~~al~~a~l~~~v~~-p~GLdt~ige~G~~LSgGQ~QRlaLARAll~~~~l~ 478 (559)
T COG4988 400 VSQNPYLFAGTIRENILLARPDASDEEIIAALDQAGLLEFVPK-PDGLDTVIGEGGAGLSGGQAQRLALARALLSPASLL 478 (559)
T ss_pred eCCCCccccccHHHHhhccCCcCCHHHHHHHHHHhcHHHhhcC-CCcccchhccCCCCCCHHHHHHHHHHHHhcCCCCEE
Confidence 9999999999999999999999999999999999999999999 999999999999999999999999999999999999
Q ss_pred EeeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhccCEEEEEeCCEEEEecChHHHhhhccchHHHHHHHhhc
Q 001411 996 LLDEATSALDTASENLIQEALDKLMEGRTTIMVAHRLSTIRNADKIAVLQQGKVAEIGSHEQLLRKENGIYKQLIRLQQD 1075 (1082)
Q Consensus 996 lLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~~DrI~Vl~~G~ive~G~~~eLl~~~~g~f~~l~~~~~~ 1075 (1082)
|||||||+||.+||+.|++.|.+.++++|||+||||++.+.++|+|+|||+||++|.|+|++|.+ ++|.|++|+..|..
T Consensus 479 llDEpTA~LD~etE~~i~~~l~~l~~~ktvl~itHrl~~~~~~D~I~vld~G~l~~~g~~~~L~~-~~~~y~~l~~~q~~ 557 (559)
T COG4988 479 LLDEPTAHLDAETEQIILQALQELAKQKTVLVITHRLEDAADADRIVVLDNGRLVEQGTHEELSE-KQGLYANLLKQQEG 557 (559)
T ss_pred EecCCccCCCHhHHHHHHHHHHHHHhCCeEEEEEcChHHHhcCCEEEEecCCceeccCCHHHHhh-cCcHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999998 68999999998764
|
|
| >TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-83 Score=800.36 Aligned_cols=561 Identities=25% Similarity=0.390 Sum_probs=487.4
Q ss_pred HHHHHhcchhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCchhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001411 500 ELLKLNAAEWPYAVLGSVGAILAGMEAPLFALGITHILTAFYSPHDSQIKRVVDQVALIFVGLAVVTIPVYLLQHYFYTL 579 (1082)
Q Consensus 500 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 579 (1082)
+++.+.++.++.+...++..++..+.....++.+..+++....... ......+..+++++.++..++.+++.++..+
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~p~~~~~iiD~v~~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (708)
T TIGR01193 146 KFIPLITRQKKLIVNIVIAAIIVTLISIAGSYYLQKIIDTYIPHKM---MGTLGIISIGLIIAYIIQQILSYIQIFLLNV 222 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555555554444444444444455555555555443211 1122233444555566677888889999999
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCccccccCCChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001411 580 MGEHLTARVRLSMFSAILSNEIGWFDLDENNTGLLISTLAADATLVRSALADRLSIIVQNVALTVTAFVIAFILSWRLAA 659 (1082)
Q Consensus 580 ~~~~~~~~l~~~l~~~~l~~~~~ffd~~~~~~G~il~r~s~D~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~ 659 (1082)
.+.++..++|.++++++++.|++||+. +++|++++|++ |.+.+.+.+...+...+.+++.+++.++++++++|.+++
T Consensus 223 ~~~~~~~~l~~~~~~~ll~l~~~~f~~--~~~G~~~~r~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l 299 (708)
T TIGR01193 223 LGQRLSIDIILSYIKHLFELPMSFFST--RRTGEIVSRFT-DASSIIDALASTILSLFLDMWILVIVGLFLVRQNMLLFL 299 (708)
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHhCC--CchhHHHHHhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 999999999999999999999999975 89999999998 999999998888888888888888888889999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHccHHHHHHcCcHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 001411 660 VVAASLPLLIGAFVAEQLFLKGFGGDYNRAYSRATSVAREAIANIRTVAAYGIEKRISIQFASELSQPNKQALLRGHISG 739 (1082)
Q Consensus 660 ~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~tIra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 739 (1082)
++++++|+++++.+...+..++..++..+...+..+.+.|+++|+++||+||.++.+.++|.+..++..+...+......
T Consensus 300 i~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (708)
T TIGR01193 300 LSLLSIPVYAVIIILFKRTFNKLNHDAMQANAVLNSSIIEDLNGIETIKSLTSEAERYSKIDSEFGDYLNKSFKYQKADQ 379 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999988888888888888888888889999999999999999999999999999999999998888888888777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCC
Q 001411 740 FGYGVSQLLSLCSYALGLWYASVLIKQKGSNFGDIMKSFMVLIITALAVAETLALAPDIVKGSQALGPVFGILYRKTAIQ 819 (1082)
Q Consensus 740 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~~~~~~~~~ 819 (1082)
+...+..++..+...+.+|+|..++..|.++.|.++++..+......++..+...+..+..+..+.+|+.++++.+++.+
T Consensus 380 ~~~~~~~~~~~~~~i~il~~g~~lv~~g~ls~G~lva~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~ 459 (708)
T TIGR01193 380 GQQAIKAVTKLILNVVILWTGAYLVMRGKLTLGQLITFNALLSYFLTPLENIINLQPKLQAARVANNRLNEVYLVDSEFI 459 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccc
Confidence 77777777777888889999999999999999999999888888889999999999999999999999999987655433
Q ss_pred CCCCCCcccccccccEEEEeEEEECCCCCCcccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCc
Q 001411 820 PDDPASKEVTEIKGNIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGY 899 (1082)
Q Consensus 820 ~~~~~~~~~~~~~g~I~~~~Vs~~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~ 899 (1082)
.... ....++..|.|+|+||+|+|+. ++++|+|+||+|+|||++||||+||||||||+++|+|+|+|++|+|++||+
T Consensus 460 ~~~~-~~~~~~~~~~I~~~~vsf~y~~--~~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~~G~I~idg~ 536 (708)
T TIGR01193 460 NKKK-RTELNNLNGDIVINDVSYSYGY--GSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGF 536 (708)
T ss_pred cccc-ccCCCCCCCcEEEEEEEEEcCC--CCcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCCcEEEECCE
Confidence 2211 1112345678999999999973 457999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCHHHHhcceEEEcccCccccccHHHHhccC-CCCCCHHHHHHHHHHhcHHHHHhhCcccccccccCCCCCCChhH
Q 001411 900 DIRTLNLRSLRRKIGLVQQEPALFSTTIYENIKYG-NEDASEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQ 978 (1082)
Q Consensus 900 di~~i~~~~lR~~i~~VpQdp~Lf~gTIreNl~~~-~~~~~d~ei~~al~~a~l~~~i~~lp~gldt~v~e~G~~LSgGQ 978 (1082)
|+++++++++|++|+||||||+||+|||||||.++ .++++|+++++|++.++++++|.++|+||||.+||+|.+|||||
T Consensus 537 ~i~~~~~~~lr~~i~~v~Q~~~lf~gTI~eNi~l~~~~~~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LSgGQ 616 (708)
T TIGR01193 537 SLKDIDRHTLRQFINYLPQEPYIFSGSILENLLLGAKENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQ 616 (708)
T ss_pred EHHHcCHHHHHHheEEEecCceehhHHHHHHHhccCCCCCCHHHHHHHHHHhCCHHHHHhcccccCcEecCCCCCCCHHH
Confidence 99999999999999999999999999999999998 47899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhccCEEEEEeCCEEEEecChHHH
Q 001411 979 KQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLMEGRTTIMVAHRLSTIRNADKIAVLQQGKVAEIGSHEQL 1058 (1082)
Q Consensus 979 rQrlaLARAlL~~~~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~~DrI~Vl~~G~ive~G~~~eL 1058 (1082)
||||+||||++++|+|||||||||+||++||+.|++.|++. +++|+|+||||++++..||+|+||++|+++|.|+|+||
T Consensus 617 rQRialARall~~p~iliLDE~Ts~LD~~te~~i~~~L~~~-~~~T~IiitHr~~~~~~~D~i~~l~~G~i~~~G~~~~L 695 (708)
T TIGR01193 617 KQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNLLNL-QDKTIIFVAHRLSVAKQSDKIIVLDHGKIIEQGSHDEL 695 (708)
T ss_pred HHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHh-cCCEEEEEecchHHHHcCCEEEEEECCEEEEECCHHHH
Confidence 99999999999999999999999999999999999999974 78999999999999999999999999999999999999
Q ss_pred hhhccchHHHHHH
Q 001411 1059 LRKENGIYKQLIR 1071 (1082)
Q Consensus 1059 l~~~~g~f~~l~~ 1071 (1082)
++ ++|.|++|++
T Consensus 696 ~~-~~~~y~~l~~ 707 (708)
T TIGR01193 696 LD-RNGFYASLIH 707 (708)
T ss_pred Hh-cCCcHHHHhh
Confidence 98 5899999985
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc. |
| >TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-83 Score=797.17 Aligned_cols=509 Identities=28% Similarity=0.389 Sum_probs=464.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccccccCCChhHHHHHHHhhHHHHHHHHHHHHH
Q 001411 555 VALIFVGLAVVTIPVYLLQHYFYTLMGEHLTARVRLSMFSAILSNEIGWFDLDENNTGLLISTLAADATLVRSALADRLS 634 (1082)
Q Consensus 555 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~l~~~~~ffd~~~~~~G~il~r~s~D~~~i~~~~~~~l~ 634 (1082)
+...++++.++..++.+++.++....+.++..+++.++++++++.|++||+. .++|++++|++.| +.+++.+...+.
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~l~~~~~~~--~~~g~~~~r~~~~-~~i~~~~~~~~~ 272 (710)
T TIGR03796 196 LLLGMGLTALLQGVLTWLQLYYLRRLQIKLAVGMSARFLWHILRLPVRFFAQ--RHAGDIASRVQLN-DQVAEFLSGQLA 272 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHcC--CcccHHHHHhhhH-HHHHHHHHHHHH
Confidence 4445555666677888899999999999999999999999999999999975 8999999999998 689999998899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHccHHHHHHcCcHH
Q 001411 635 IIVQNVALTVTAFVIAFILSWRLAAVVAASLPLLIGAFVAEQLFLKGFGGDYNRAYSRATSVAREAIANIRTVAAYGIEK 714 (1082)
Q Consensus 635 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~tIra~~~~~ 714 (1082)
..+.+++.+++.+++++.++|.+++++++++|+.+++.++..+..++..++..+...+..+.+.|+++|+++||++|+++
T Consensus 273 ~~~~~~~~~~~~~~~l~~~~~~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~ 352 (710)
T TIGR03796 273 TTALDAVMLVFYALLMLLYDPVLTLIGIAFAAINVLALQLVSRRRVDANRRLQQDAGKLTGVAISGLQSIETLKASGLES 352 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHccCCH
Confidence 99999999999999999999999999999999988888887777777777777788888999999999999999999999
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 001411 715 RISIQFASELSQPNKQALLRGHISGFGYGVSQLLSLCSYALGLWYASVLIKQKGSNFGDIMKSFMVLIITALAVAETLAL 794 (1082)
Q Consensus 715 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 794 (1082)
.+.++|.+...+..+...+......+...+...+..+...+.+|+|.+++..|.++.|.++++..+......++..+...
T Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~il~~g~~~v~~g~lt~G~lva~~~l~~~~~~p~~~l~~~ 432 (710)
T TIGR03796 353 DFFSRWAGYQAKLLNAQQELGVLTQILGVLPTLLTSLNSALILVVGGLRVMEGQLTIGMLVAFQSLMSSFLEPVNNLVGF 432 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999888888888888888888888888889999999999999999999999888888888999999999
Q ss_pred HHHHHHHHHHHHHHHHhhcccccCCCCCC---C-Cccc-ccccccEEEEeEEEECCCCCCcccccceeEEeeCCcEEEEE
Q 001411 795 APDIVKGSQALGPVFGILYRKTAIQPDDP---A-SKEV-TEIKGNIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVV 869 (1082)
Q Consensus 795 ~~~~~~~~~a~~ri~~~~~~~~~~~~~~~---~-~~~~-~~~~g~I~~~~Vs~~Y~~~~~~~vL~~vsl~I~~Ge~vaIv 869 (1082)
+..+..+..+.+|+.++++.+++.+.... . .... ++..|.|+|+||+|+|+.. ++++|+|+||+|+|||++|||
T Consensus 433 ~~~~~~~~~~~~ri~~il~~~~e~~~~~~~~~~~~~~~~~~~~~~I~~~~vsf~y~~~-~~~vL~~isl~i~~Ge~vaIv 511 (710)
T TIGR03796 433 GGTLQELEGDLNRLDDVLRNPVDPLLEEEEAPAAGSEPSPRLSGYVELRNITFGYSPL-EPPLIENFSLTLQPGQRVALV 511 (710)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCccccccccccccccccCCCCCCeEEEEEEEEecCCC-CCCcccceeEEEcCCCEEEEE
Confidence 99999999999999999876554322110 0 0111 2346789999999999842 457999999999999999999
Q ss_pred cCCCCCHHHHHHHHhccccCCccEEEECCccCCCCCHHHHhcceEEEcccCccccccHHHHhccCCCCCCHHHHHHHHHH
Q 001411 870 GQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRKIGLVQQEPALFSTTIYENIKYGNEDASEIELMKATKA 949 (1082)
Q Consensus 870 G~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR~~i~~VpQdp~Lf~gTIreNl~~~~~~~~d~ei~~al~~ 949 (1082)
|+||||||||+++|+|+|+|++|+|.+||+|+++++.+++|++|+||||||++|+|||||||.++.++++|+++++|++.
T Consensus 512 G~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTi~eNi~l~~~~~~~~~i~~al~~ 591 (710)
T TIGR03796 512 GGSGSGKSTIAKLVAGLYQPWSGEILFDGIPREEIPREVLANSVAMVDQDIFLFEGTVRDNLTLWDPTIPDADLVRACKD 591 (710)
T ss_pred CCCCCCHHHHHHHHhcCCCCCCcEEEECCEeHHHCCHHHHHhheeEEecCChhhhccHHHHhhCCCCCCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999998888999999999999
Q ss_pred hcHHHHHhhCcccccccccCCCCCCChhHHHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEe
Q 001411 950 ANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLMEGRTTIMVA 1029 (1082)
Q Consensus 950 a~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlaLARAlL~~~~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~Ia 1029 (1082)
++++++|.++|+||||.+||+|.+|||||||||+||||++++|+|||||||||+||++||+.|.+.|++ .++|+|+||
T Consensus 592 ~~l~~~i~~lp~gl~t~i~e~G~~LSGGQrQRiaLARall~~p~iliLDEptS~LD~~te~~i~~~l~~--~~~T~Iiit 669 (710)
T TIGR03796 592 AAIHDVITSRPGGYDAELAEGGANLSGGQRQRLEIARALVRNPSILILDEATSALDPETEKIIDDNLRR--RGCTCIIVA 669 (710)
T ss_pred hCCHHHHHhCcCcccceeccCCCCCCHHHHHHHHHHHHHhhCCCEEEEECccccCCHHHHHHHHHHHHh--cCCEEEEEe
Confidence 999999999999999999999999999999999999999999999999999999999999999999987 589999999
Q ss_pred cCchhhhccCEEEEEeCCEEEEecChHHHhhhccchHHHHH
Q 001411 1030 HRLSTIRNADKIAVLQQGKVAEIGSHEQLLRKENGIYKQLI 1070 (1082)
Q Consensus 1030 Hrl~ti~~~DrI~Vl~~G~ive~G~~~eLl~~~~g~f~~l~ 1070 (1082)
||++++..||||+||++|+|+|.|+|+||++ ++|.|++|+
T Consensus 670 Hrl~~i~~~D~Iivl~~G~i~~~G~~~~Ll~-~~~~y~~l~ 709 (710)
T TIGR03796 670 HRLSTIRDCDEIIVLERGKVVQRGTHEELWA-VGGAYARLI 709 (710)
T ss_pred cCHHHHHhCCEEEEEeCCEEEEecCHHHHHH-cCCcHHHHh
Confidence 9999999999999999999999999999998 689999987
|
This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin. |
| >PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-82 Score=771.51 Aligned_cols=564 Identities=23% Similarity=0.305 Sum_probs=474.2
Q ss_pred HHHHhcchhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCch-hhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001411 501 LLKLNAAEWPYAVLGSVGAILAGMEAPLFALGITHILTAFYSPHDS-QIKRVVDQVALIFVGLAVVTIPVYLLQHYFYTL 579 (1082)
Q Consensus 501 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 579 (1082)
++++.+++++.+.+++++.++..+.....++.+..+++........ ........+...+++++++..++.++..++..+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (574)
T PRK11160 7 FLKLYKRHWFMLSLGILLAIVTLLASIGLLTLSGWFLSASAVAGLAGLYSFNYMLPAAGVRGAAIGRTAGRYGERLVSHD 86 (574)
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555555555555554444444444455554433211110 000011112233445566777888888899999
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCccccccCCChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001411 580 MGEHLTARVRLSMFSAILSNEIGWFDLDENNTGLLISTLAADATLVRSALADRLSIIVQNVALTVTAFVIAFILSWRLAA 659 (1082)
Q Consensus 580 ~~~~~~~~l~~~l~~~~l~~~~~ffd~~~~~~G~il~r~s~D~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~ 659 (1082)
.+.+...++|.++++++++.|+.||+. .++|++++|+++|++.++..+...+..++..++.++++++++++++|.+++
T Consensus 87 ~~~~~~~~lR~~l~~~l~~~~~~~~~~--~~~g~~~srl~~Dv~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l 164 (574)
T PRK11160 87 ATFRVLTHLRVFTFSKLLPLSPAGLAR--YRQGDLLNRLVADVDTLDHLYLRLISPLVAALVVILVLTIGLSFFDLTLAL 164 (574)
T ss_pred HHHHHHHHHHHHHHHHhhccChHhhcc--CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999985 789999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHH-HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHccHHHHHHcCcHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 001411 660 VVAASLPLLIGA-FVAEQLFLKGFGGDYNRAYSRATSVAREAIANIRTVAAYGIEKRISIQFASELSQPNKQALLRGHIS 738 (1082)
Q Consensus 660 ~~l~~~p~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~tIra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 738 (1082)
++++++|+++++ .++..+..+...++.++...+..+.+.|.++|+++||+||.++++.++|.+..++..+...+.....
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (574)
T PRK11160 165 TLGGILLLLLLLLPLLFYRLGKKPGQDLTHLRAQYRVQLTEWLQGQAELTLFGAEDRYRQQLEQTEQQWLAAQRRQANLT 244 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHCCHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888876543 3455566666677778888899999999999999999999999999999999999999998888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc
Q 001411 739 GFGYGVSQLLSLCSYALGLWYASVLIKQKGSNFGDIMKSFMVLII-TALAVAETLALAPDIVKGSQALGPVFGILYRKTA 817 (1082)
Q Consensus 739 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~ri~~~~~~~~~ 817 (1082)
++...+...+..+..++.+|+|..+ ..|.++.|.+++++.+... ...++..+...+..+..+..+.+|+.++++.+++
T Consensus 245 ~~~~~~~~~~~~~~~~~i~~~g~~~-~~g~~t~g~l~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~s~~ri~~ll~~~~~ 323 (574)
T PRK11160 245 GLSQALMILANGLTVVLMLWLAAGG-VGGNAQPGALIALFVFAALAAFEALMPVAGAFQHLGQVIASARRINEITEQKPE 323 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-hccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 8888888888888888888999888 4788899988776655433 3345566677788888999999999999886654
Q ss_pred CCCCCCCCcccccccccEEEEeEEEECCCCCCcccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEEC
Q 001411 818 IQPDDPASKEVTEIKGNIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLID 897 (1082)
Q Consensus 818 ~~~~~~~~~~~~~~~g~I~~~~Vs~~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~id 897 (1082)
.+.... ....+..+.|+|+||+|+|++. ++++|+|+||+|+|||++||||+||||||||+++|+|+|+|++|+|++|
T Consensus 324 ~~~~~~--~~~~~~~~~i~~~~v~f~y~~~-~~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~~G~I~i~ 400 (574)
T PRK11160 324 VTFPTT--STAAADQVSLTLNNVSFTYPDQ-PQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLN 400 (574)
T ss_pred CCCCcc--cCCCCCCCeEEEEEEEEECCCC-CCcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEEC
Confidence 321111 1112345789999999999742 3479999999999999999999999999999999999999999999999
Q ss_pred CccCCCCCHHHHhcceEEEcccCccccccHHHHhccCCCCCCHHHHHHHHHHhcHHHHHhhCcccccccccCCCCCCChh
Q 001411 898 GYDIRTLNLRSLRRKIGLVQQEPALFSTTIYENIKYGNEDASEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGG 977 (1082)
Q Consensus 898 G~di~~i~~~~lR~~i~~VpQdp~Lf~gTIreNl~~~~~~~~d~ei~~al~~a~l~~~i~~lp~gldt~v~e~G~~LSgG 977 (1082)
|+|+++++.+++|++|+||||||++|++||+|||.++.++++|++++++++.+++++++++ |+||||.+||+|.+||||
T Consensus 401 g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~al~~~~l~~~i~~-p~GldT~vge~g~~LSgG 479 (574)
T PRK11160 401 GQPIADYSEAALRQAISVVSQRVHLFSATLRDNLLLAAPNASDEALIEVLQQVGLEKLLED-DKGLNAWLGEGGRQLSGG 479 (574)
T ss_pred CEEhhhCCHHHHHhheeEEcccchhhcccHHHHhhcCCCccCHHHHHHHHHHcCCHHHHcC-ccccCchhcCCCCCCCHH
Confidence 9999999999999999999999999999999999999889999999999999999999999 999999999999999999
Q ss_pred HHHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhccCEEEEEeCCEEEEecChHH
Q 001411 978 QKQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLMEGRTTIMVAHRLSTIRNADKIAVLQQGKVAEIGSHEQ 1057 (1082)
Q Consensus 978 QrQrlaLARAlL~~~~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~~DrI~Vl~~G~ive~G~~~e 1057 (1082)
||||+|||||++++|+|||||||||+||++||+.|++.|++..+++|+|+||||++++..||+|++|++|+++|.|+|+|
T Consensus 480 qrqRialARall~~~~ililDE~ts~lD~~t~~~i~~~l~~~~~~~tviiitHr~~~~~~~d~i~~l~~G~i~~~g~~~~ 559 (574)
T PRK11160 480 EQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHAQNKTVLMITHRLTGLEQFDRICVMDNGQIIEQGTHQE 559 (574)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEecChhHHHhCCEEEEEeCCeEEEeCCHHH
Confidence 99999999999999999999999999999999999999999888999999999999999999999999999999999999
Q ss_pred HhhhccchHHHHHHH
Q 001411 1058 LLRKENGIYKQLIRL 1072 (1082)
Q Consensus 1058 Ll~~~~g~f~~l~~~ 1072 (1082)
|++ ++|.|++||+.
T Consensus 560 l~~-~~g~y~~l~~~ 573 (574)
T PRK11160 560 LLA-QQGRYYQLKQR 573 (574)
T ss_pred HHh-cCcHHHHHHhh
Confidence 998 68999999863
|
|
| >PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-82 Score=772.43 Aligned_cols=564 Identities=26% Similarity=0.361 Sum_probs=471.5
Q ss_pred HHHHhcchhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCchhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001411 501 LLKLNAAEWPYAVLGSVGAILAGMEAPLFALGITHILTAFYSPHDSQIKRVVDQVALIFVGLAVVTIPVYLLQHYFYTLM 580 (1082)
Q Consensus 501 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 580 (1082)
++.+.+++++.+.+..++.++..+.....++.+..+++..+....... .....+.++++++.++..++.+++.++....
T Consensus 14 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~iid~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (592)
T PRK10790 14 LLAYGSPWRKPLGLAVLMLWVAAAAEVSGPLLISYFIDNMVAKGNLPL-GLVAGLAAAYVGLQLLAAGLHYAQSLLFNRA 92 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcch-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444455555555555555555555566666666665543221111 1111223334455556667778888889999
Q ss_pred HHHHHHHHHHHHHHHHHhCCCccccccCCChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001411 581 GEHLTARVRLSMFSAILSNEIGWFDLDENNTGLLISTLAADATLVRSALADRLSIIVQNVALTVTAFVIAFILSWRLAAV 660 (1082)
Q Consensus 581 ~~~~~~~l~~~l~~~~l~~~~~ffd~~~~~~G~il~r~s~D~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~ 660 (1082)
+.+...++|.++++++++.|++||+. .++|++++|+++|++.++..+...+..++..++.+++.++++++++|.++++
T Consensus 93 ~~~~~~~lr~~l~~~l~~~~~~~~~~--~~~g~~~~~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~li 170 (592)
T PRK10790 93 AVGVVQQLRTDVMDAALRQPLSAFDT--QPVGQLISRVTNDTEVIRDLYVTVVATVLRSAALIGAMLVAMFSLDWRMALV 170 (592)
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHhCC--CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999975 7899999999999999999999999999999988888889999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHccHHHHHHcCcHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 001411 661 VAASLPLLIGAFVAEQLFLKGFGGDYNRAYSRATSVAREAIANIRTVAAYGIEKRISIQFASELSQPNKQALLRGHISGF 740 (1082)
Q Consensus 661 ~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~tIra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 740 (1082)
+++++|+.++......+..+...++.++...+...++.|+++|+.+||+||.++++.+++.+..++..+...+.....++
T Consensus 171 ~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (592)
T PRK10790 171 AIMIFPAVLVVMVIYQRYSTPIVRRVRAYLADINDGFNEVINGMSVIQQFRQQARFGERMGEASRSHYMARMQTLRLDGF 250 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888777776677777777777777888899999999999999999999999999999888877776666655544
Q ss_pred H-HHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCC
Q 001411 741 G-YGVSQLLSLCSYALGLWYASVLIKQKGSNFGDIMKSFMVLIITALAVAETLALAPDIVKGSQALGPVFGILYRKTAIQ 819 (1082)
Q Consensus 741 ~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~~~~~~~~~ 819 (1082)
. ..+...+..+...+..+++.. +..|.+++|.++++..+......++..+...+..+.+...+.+|+.++++.+++..
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~-~~~g~is~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~ 329 (592)
T PRK10790 251 LLRPLLSLFSALILCGLLMLFGF-SASGTIEVGVLYAFISYLGRLNEPLIELTTQQSMLQQAVVAGERVFELMDGPRQQY 329 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccC
Confidence 3 233333333332222222333 56889999999988888888899999999999999999999999999987543321
Q ss_pred CCCCCCcccccccccEEEEeEEEECCCCCCcccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCc
Q 001411 820 PDDPASKEVTEIKGNIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGY 899 (1082)
Q Consensus 820 ~~~~~~~~~~~~~g~I~~~~Vs~~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~ 899 (1082)
.. ...++..+.|+|+||+|+|+. +.++|+|+||+|+|||++||||+||||||||+++|+|+|+|++|+|.+||+
T Consensus 330 ~~----~~~~~~~~~i~~~~v~f~y~~--~~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~ 403 (592)
T PRK10790 330 GN----DDRPLQSGRIDIDNVSFAYRD--DNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGR 403 (592)
T ss_pred CC----CccCCCCCeEEEEEEEEEeCC--CCceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCE
Confidence 11 111233567999999999973 357999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCHHHHhcceEEEcccCccccccHHHHhccCCCCCCHHHHHHHHHHhcHHHHHhhCcccccccccCCCCCCChhHH
Q 001411 900 DIRTLNLRSLRRKIGLVQQEPALFSTTIYENIKYGNEDASEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQK 979 (1082)
Q Consensus 900 di~~i~~~~lR~~i~~VpQdp~Lf~gTIreNl~~~~~~~~d~ei~~al~~a~l~~~i~~lp~gldt~v~e~G~~LSgGQr 979 (1082)
|+++++++.+|++|+||||||++|+||||+||.++. +++|++++++++.++++++|+++|+||||.+||+|.+||||||
T Consensus 404 ~i~~~~~~~l~~~i~~v~Q~~~lF~~Ti~~NI~~~~-~~~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSGGqr 482 (592)
T PRK10790 404 PLSSLSHSVLRQGVAMVQQDPVVLADTFLANVTLGR-DISEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQK 482 (592)
T ss_pred EhhhCCHHHHHhheEEEccCCccccchHHHHHHhCC-CCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHH
Confidence 999999999999999999999999999999999987 6899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhccCEEEEEeCCEEEEecChHHHh
Q 001411 980 QRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLMEGRTTIMVAHRLSTIRNADKIAVLQQGKVAEIGSHEQLL 1059 (1082)
Q Consensus 980 QrlaLARAlL~~~~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~~DrI~Vl~~G~ive~G~~~eLl 1059 (1082)
|||||||||+++|+|||||||||+||++|++.|++.|++..++||+|+||||++++..||+|++|++|+++|.|+|+||+
T Consensus 483 QRialARaLl~~~~illlDEpts~LD~~t~~~i~~~l~~~~~~~tvIivtHr~~~l~~~D~ii~l~~G~i~~~G~~~~L~ 562 (592)
T PRK10790 483 QLLALARVLVQTPQILILDEATANIDSGTEQAIQQALAAVREHTTLVVIAHRLSTIVEADTILVLHRGQAVEQGTHQQLL 562 (592)
T ss_pred HHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 99999999999999999999999999999999999999988899999999999999999999999999999999999999
Q ss_pred hhccchHHHHHHHhhcc
Q 001411 1060 RKENGIYKQLIRLQQDK 1076 (1082)
Q Consensus 1060 ~~~~g~f~~l~~~~~~~ 1076 (1082)
+ +++.|+++++.|...
T Consensus 563 ~-~~~~y~~l~~~~~~~ 578 (592)
T PRK10790 563 A-AQGRYWQMYQLQLAG 578 (592)
T ss_pred h-CCCHHHHHHHHHhhh
Confidence 8 579999999977544
|
|
| >PRK11176 lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-81 Score=769.87 Aligned_cols=511 Identities=32% Similarity=0.526 Sum_probs=464.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccccccCCChhHHHHHHHhhHHHHHHHHHHHHHHHH
Q 001411 558 IFVGLAVVTIPVYLLQHYFYTLMGEHLTARVRLSMFSAILSNEIGWFDLDENNTGLLISTLAADATLVRSALADRLSIIV 637 (1082)
Q Consensus 558 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~l~~~~~ffd~~~~~~G~il~r~s~D~~~i~~~~~~~l~~~~ 637 (1082)
.++++.++..++.+++.+...+.+.+....+|.++++++++.|.++|+. .+.|++++|+++|++.+...+...+..++
T Consensus 70 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~l~~~~~~~~~~--~~~g~~~~~~~~d~~~i~~~~~~~~~~~~ 147 (582)
T PRK11176 70 VVIGLMILRGITSFISSYCISWVSGKVVMTMRRRLFGHMMGMPVSFFDK--QSTGTLLSRITYDSEQVASSSSGALITVV 147 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCC--CCccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444566677778888888899999999999999999999999999974 78999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHccHHHHHHcCcHHHHH
Q 001411 638 QNVALTVTAFVIAFILSWRLAAVVAASLPLLIGAFVAEQLFLKGFGGDYNRAYSRATSVAREAIANIRTVAAYGIEKRIS 717 (1082)
Q Consensus 638 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~tIra~~~~~~~~ 717 (1082)
.+++.+++.++++++++|.+++++++++|+.+++.....+..++..++.++...+..+++.|.++|+++||+||.++.+.
T Consensus 148 ~~~~~~~~~~~~l~~~~~~l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~ 227 (582)
T PRK11176 148 REGASIIGLFIMMFYYSWQLSLILIVIAPIVSIAIRVVSKRFRNISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVET 227 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHhCcCHHHH
Confidence 99999999999999999999999999888888877777777777777888888889999999999999999999999999
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001411 718 IQFASELSQPNKQALLRGHISGFGYGVSQLLSLCSYALGLWYASVLIKQKGSNFGDIMKSFMVLIITALAVAETLALAPD 797 (1082)
Q Consensus 718 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 797 (1082)
++|.+..++..+...+......+...+...+..+...+.++++..++..|.+++|.++.++.+......++..+...+..
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~g~is~g~~~~~~~~~~~~~~pl~~l~~~~~~ 307 (582)
T PRK11176 228 KRFDKVSNRMRQQGMKMVSASSISDPIIQLIASLALAFVLYAASFPSVMDTLTAGTITVVFSSMIALMRPLKSLTNVNAQ 307 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998888888888888888888888888899999999999999999988888877788889999999999
Q ss_pred HHHHHHHHHHHHHhhcccccCCCCCCCCcccccccccEEEEeEEEECCCCCCcccccceeEEeeCCcEEEEEcCCCCCHH
Q 001411 798 IVKGSQALGPVFGILYRKTAIQPDDPASKEVTEIKGNIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKS 877 (1082)
Q Consensus 798 ~~~~~~a~~ri~~~~~~~~~~~~~~~~~~~~~~~~g~I~~~~Vs~~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKS 877 (1082)
+..+..+.+|+.++++.+++.+.. . ...++..+.|+|+||+|+|+++ ++++|+|+||+|+|||++||||+||||||
T Consensus 308 ~~~~~~~~~ri~~~~~~~~~~~~~-~--~~~~~~~~~i~~~~vsf~y~~~-~~~il~~i~l~i~~G~~~aIvG~sGsGKS 383 (582)
T PRK11176 308 FQRGMAACQTLFAILDLEQEKDEG-K--RVIERAKGDIEFRNVTFTYPGK-EVPALRNINFKIPAGKTVALVGRSGSGKS 383 (582)
T ss_pred HHHHHHHHHHHHHHhcCCCcCCCC-C--cCCCCCCCeEEEEEEEEecCCC-CCccccCceEEeCCCCEEEEECCCCCCHH
Confidence 999999999999988754332211 1 1122345679999999999743 46799999999999999999999999999
Q ss_pred HHHHHHhccccCCccEEEECCccCCCCCHHHHhcceEEEcccCccccccHHHHhccCCCC-CCHHHHHHHHHHhcHHHHH
Q 001411 878 TVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRKIGLVQQEPALFSTTIYENIKYGNED-ASEIELMKATKAANAHGFI 956 (1082)
Q Consensus 878 TL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR~~i~~VpQdp~Lf~gTIreNl~~~~~~-~~d~ei~~al~~a~l~~~i 956 (1082)
||+++|+|+|+|++|+|++||+|+++++.+++|++|+||||||++|+|||||||.++.++ ++|++++++++.+++++++
T Consensus 384 TLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~al~~~~l~~~i 463 (582)
T PRK11176 384 TIANLLTRFYDIDEGEILLDGHDLRDYTLASLRNQVALVSQNVHLFNDTIANNIAYARTEQYSREQIEEAARMAYAMDFI 463 (582)
T ss_pred HHHHHHHhccCCCCceEEECCEEhhhcCHHHHHhhceEEccCceeecchHHHHHhcCCCCCCCHHHHHHHHHHhCcHHHH
Confidence 999999999999999999999999999999999999999999999999999999998654 7999999999999999999
Q ss_pred hhCcccccccccCCCCCCChhHHHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhh
Q 001411 957 SRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLMEGRTTIMVAHRLSTIR 1036 (1082)
Q Consensus 957 ~~lp~gldt~v~e~G~~LSgGQrQrlaLARAlL~~~~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~ 1036 (1082)
+++|+||||.+||+|.+|||||||||+|||||+++|+|||||||||+||++||+.+.+.|++..+++|+|+||||++++.
T Consensus 464 ~~lp~Gldt~ig~~g~~LSGGqrQRi~LARall~~~~ililDEptsaLD~~t~~~i~~~l~~~~~~~tvI~VtHr~~~~~ 543 (582)
T PRK11176 464 NKMDNGLDTVIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIE 543 (582)
T ss_pred HhcccccCceeCCCCCcCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEecchHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999888999999999999999
Q ss_pred ccCEEEEEeCCEEEEecChHHHhhhccchHHHHHHHhhc
Q 001411 1037 NADKIAVLQQGKVAEIGSHEQLLRKENGIYKQLIRLQQD 1075 (1082)
Q Consensus 1037 ~~DrI~Vl~~G~ive~G~~~eLl~~~~g~f~~l~~~~~~ 1075 (1082)
.||+|++|++|+|+|.|+|++|++ +++.|++|++.|.+
T Consensus 544 ~~D~Ii~l~~g~i~e~g~~~~l~~-~~~~y~~l~~~~~~ 581 (582)
T PRK11176 544 KADEILVVEDGEIVERGTHAELLA-QNGVYAQLHKMQFG 581 (582)
T ss_pred hCCEEEEEECCEEEEeCCHHHHHh-CCChHHHHHHHHhc
Confidence 999999999999999999999998 57999999987643
|
|
| >TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-81 Score=783.43 Aligned_cols=547 Identities=25% Similarity=0.409 Sum_probs=476.1
Q ss_pred cchhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCchhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001411 506 AAEWPYAVLGSVGAILAGMEAPLFALGITHILTAFYSPHDSQIKRVVDQVALIFVGLAVVTIPVYLLQHYFYTLMGEHLT 585 (1082)
Q Consensus 506 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 585 (1082)
+++++.+...++++++..+.....++.+..+++....... ......+..+++++.++..++.+++.++..+.+.++.
T Consensus 143 ~~~~~~~~~~~~~~~~~~l~~l~~p~~~~~iiD~~~~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (694)
T TIGR03375 143 KESWPLYRDVLIASLLINLLALASPLFVMNVYDRVVPNQA---FETLWVLAIGVALAIVFDFVLKTLRSYFLDVAGKKAD 219 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCc---HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444445555554432211 1112233344445556677888889999999999999
Q ss_pred HHHHHHHHHHHHhCCCccccccCCChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001411 586 ARVRLSMFSAILSNEIGWFDLDENNTGLLISTLAADATLVRSALADRLSIIVQNVALTVTAFVIAFILSWRLAAVVAASL 665 (1082)
Q Consensus 586 ~~l~~~l~~~~l~~~~~ffd~~~~~~G~il~r~s~D~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~ 665 (1082)
.++|..+++++++.|++| + +.++|++++|+ +|++.+++.+...+...+.+++.+++.++++++++|.+++++++++
T Consensus 220 ~~l~~~~~~~ll~l~~~~-~--~~~~G~~~~r~-~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~~~ 295 (694)
T TIGR03375 220 LILSAKLFERVLGLRMEA-R--PASVGSFANQL-REFESVRDFFTSATLTALIDLPFALLFLLVIAIIGGPLVWVPLVAI 295 (694)
T ss_pred HHHHHHHHHHHhCCCccc-C--CCChhHHHHHH-HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 999999999999999998 4 36999999999 7999999999988888888888888888888999999999999999
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHccHHHHHHcCcHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 001411 666 PLLIGAFVAEQLFLKGFGGDYNRAYSRATSVAREAIANIRTVAAYGIEKRISIQFASELSQPNKQALLRGHISGFGYGVS 745 (1082)
Q Consensus 666 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~tIra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 745 (1082)
|+.+++.+...+..++..++..+...+..+.+.|+++|+++||+|+.|+.+.++|.+..++..+...+......+...+.
T Consensus 296 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (694)
T TIGR03375 296 PLILLPGLLLQRPLSRLAEESMRESAQRNAVLVESLSGLETIKALNAEGRFQRRWEQTVAALARSGLKSRFLSNLATNFA 375 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99988888888888888888888888999999999999999999999999999999999999999998888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCCCCC
Q 001411 746 QLLSLCSYALGLWYASVLIKQKGSNFGDIMKSFMVLIITALAVAETLALAPDIVKGSQALGPVFGILYRKTAIQPDDPAS 825 (1082)
Q Consensus 746 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~~~~~~~~~~~~~~~ 825 (1082)
..+..+..++.+|+|+.++..|.+++|.++++..+......++..+...+..+.....+.+|+.++++.+++.+... ..
T Consensus 376 ~~~~~~~~~~il~~g~~~v~~g~ls~G~l~a~~~~~~~~~~p~~~l~~~~~~~~~~~~~~~ri~~il~~~~e~~~~~-~~ 454 (694)
T TIGR03375 376 QFIQQLVSVAIVVVGVYLISDGELTMGGLIACVMLSGRALAPLGQLAGLLTRYQQAKTALQSLDELMQLPVERPEGT-RF 454 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCC-CC
Confidence 88888888889999999999999999999999988888999999999999999999999999999998765432211 11
Q ss_pred cccccccccEEEEeEEEECCCCCCcccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCccCCCCC
Q 001411 826 KEVTEIKGNIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLN 905 (1082)
Q Consensus 826 ~~~~~~~g~I~~~~Vs~~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~ 905 (1082)
...++..|.|+|+||+|+|++. ++++|+|+||+|+|||++||||+||||||||+++|+|+|+|++|+|.+||+|+++++
T Consensus 455 ~~~~~~~~~I~~~~vsf~Y~~~-~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~l~~~~ 533 (694)
T TIGR03375 455 LHRPRLQGEIEFRNVSFAYPGQ-ETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQID 533 (694)
T ss_pred CCCCCccceEEEEEEEEEeCCC-CccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCC
Confidence 1122345789999999999742 457999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcceEEEcccCccccccHHHHhccCCCCCCHHHHHHHHHHhcHHHHHhhCcccccccccCCCCCCChhHHHHHHHH
Q 001411 906 LRSLRRKIGLVQQEPALFSTTIYENIKYGNEDASEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIA 985 (1082)
Q Consensus 906 ~~~lR~~i~~VpQdp~Lf~gTIreNl~~~~~~~~d~ei~~al~~a~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlaLA 985 (1082)
++++|++|+||||||++|+|||+|||.++.++++++++++|++.++++++|+++|+||||.+||+|.+|||||||||+||
T Consensus 534 ~~~lr~~i~~v~Q~~~lf~~TI~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgGQrQRlalA 613 (694)
T TIGR03375 534 PADLRRNIGYVPQDPRLFYGTLRDNIALGAPYADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQAVALA 613 (694)
T ss_pred HHHHHhccEEECCChhhhhhhHHHHHhCCCCCCCHHHHHHHHHHcChHHHHHhCcccccceecCCCCCCCHHHHHHHHHH
Confidence 99999999999999999999999999999888999999999999999999999999999999999999999999999999
Q ss_pred HHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhccCEEEEEeCCEEEEecChHHHhhh
Q 001411 986 RAILKNPSILLLDEATSALDTASENLIQEALDKLMEGRTTIMVAHRLSTIRNADKIAVLQQGKVAEIGSHEQLLRK 1061 (1082)
Q Consensus 986 RAlL~~~~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~~DrI~Vl~~G~ive~G~~~eLl~~ 1061 (1082)
||++++|+|||||||||+||++||+.|++.|++..+++|+|+||||++++..||+|+||++|+|+|+|+|+||+++
T Consensus 614 Rall~~p~iliLDE~Ts~LD~~te~~i~~~l~~~~~~~T~iiItHrl~~~~~~D~iivl~~G~i~e~G~~~eLl~~ 689 (694)
T TIGR03375 614 RALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWLAGKTLVLVTHRTSLLDLVDRIIVMDNGRIVADGPKDQVLEA 689 (694)
T ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhCCEEEEEeCCEEEeeCCHHHHHHH
Confidence 9999999999999999999999999999999998889999999999999999999999999999999999999874
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export. |
| >KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-84 Score=701.61 Aligned_cols=503 Identities=32% Similarity=0.450 Sum_probs=433.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccccccCCChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001411 567 IPVYLLQHYFYTLMGEHLTARVRLSMFSAILSNEIGWFDLDENNTGLLISTLAADATLVRSALADRLSIIVQNVALTVTA 646 (1082)
Q Consensus 567 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~l~~~~~ffd~~~~~~G~il~r~s~D~~~i~~~~~~~l~~~~~~~~~~~~~ 646 (1082)
+++.-+++++......-..+.+...+|+|+....+.|+-. ..+|+++.-..+..+.+. ++.....++...+.-+..+
T Consensus 273 G~~~nlRtfLWi~VqQyttR~ie~~lfrHlh~LSlrwHL~--rrtGeVLrvmdrGtssvt-ll~yvVF~i~PtllDl~va 349 (790)
T KOG0056|consen 273 GFLNNLRTFLWIPVQQYTTREIETELFRHLHNLSLRWHLN--RRTGEVLRVMDRGTSSVT-LLEYVVFQIGPTLLDLGVA 349 (790)
T ss_pred cchhhhheeEEEEhhHhHHHHHHHHHHHHHHhhceeeeec--ccccceeehhccCcchhh-HHHHHHhhcccHHHHhhhh
Confidence 4555667777777788889999999999999999999864 678988888777777666 4554445555555544444
Q ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHccHHHHHHcCcHHHHHHHHHHHHh
Q 001411 647 FVIAF-ILSWRLAAVVAASLPLLIGAFVAEQLFLKGFGGDYNRAYSRATSVAREAIANIRTVAAYGIEKRISIQFASELS 725 (1082)
Q Consensus 647 ~~~~~-~~~~~l~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~tIra~~~~~~~~~~~~~~~~ 725 (1082)
++..+ ..+|+.+++++.+..+.+...........++.|++.....+..+.-.+++-+.+|+|-||+|++..++|.+...
T Consensus 350 ~vYF~~~Fn~wFgLIVfl~m~lY~~~Ti~iTeWRTk~rR~Mn~~~nesrAr~vDsllNFETVKyy~Ae~yEverYreAil 429 (790)
T KOG0056|consen 350 MVYFFIKFNIWFGLIVFLMMLLYCYVTIKITEWRTKARRKMNNSWNESRARQVDSLLNFETVKYYNAEDYEVERYREAIL 429 (790)
T ss_pred hhhhhhhHhHHHHHHHHHHHHHHhheeeeeehhhHHHHHHhhhhhhhhhhhhhhhhhcchhhhccCchhhhHHHHHHHHH
Confidence 44333 45888888877776666555444444444455566666677778888999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001411 726 QPNKQALLRGHISGFGYGVSQLLSLCSYALGLWYASVLIKQKGSNFGDIMKSFMVLIITALAVAETLALAPDIVKGSQAL 805 (1082)
Q Consensus 726 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 805 (1082)
++++..++....-.+.+.....+..+.......+..+++..+..+.|+++....++....+++.....++..++++..-+
T Consensus 430 ~Yqk~E~ks~~sLnfLN~~Qn~Ii~lgll~gsll~aY~Vt~q~ltVGDfVlf~TYliqLy~PLN~FGT~YR~iQ~nfiDm 509 (790)
T KOG0056|consen 430 KYQKQEWKSLASLNFLNIVQNGIIGLGLLAGSLLCAYRVTEQTLTVGDFVLFLTYLIQLYMPLNFFGTYYRSIQKNFIDM 509 (790)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhHHhhhhheeeeeeeeccccccceehHHHHHHHHhCchHHHHHHHHHHHHhhhhH
Confidence 99999888766666666666665555555556666667778889999999999999999999999999999999999999
Q ss_pred HHHHHhhcccccCCCCCCCCcccccccccEEEEeEEEECCCCCCcccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHhc
Q 001411 806 GPVFGILYRKTAIQPDDPASKEVTEIKGNIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMR 885 (1082)
Q Consensus 806 ~ri~~~~~~~~~~~~~~~~~~~~~~~~g~I~~~~Vs~~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~r 885 (1082)
++++++++++++... .|...+....+|.|+|+||+|.|. |++|||+||||+++||+.+|+|||||+||||++++|+|
T Consensus 510 Enmfdllkee~eVvd-~P~a~pl~~~~G~i~fsnvtF~Y~--p~k~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfR 586 (790)
T KOG0056|consen 510 ENMFDLLKEEPEVVD-LPGAPPLKVTQGKIEFSNVTFAYD--PGKPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFR 586 (790)
T ss_pred HHHHHHhhcCchhhc-CCCCCCccccCCeEEEEEeEEecC--CCCceeecceEEecCCcEEEEECCCCCchhHHHHHHHH
Confidence 999999987766432 223333345689999999999996 67899999999999999999999999999999999999
Q ss_pred cccCCccEEEECCccCCCCCHHHHhcceEEEcccCccccccHHHHhccCCCCCCHHHHHHHHHHhcHHHHHhhCcccccc
Q 001411 886 FYDPISGTVLIDGYDIRTLNLRSLRRKIGLVQQEPALFSTTIYENIKYGNEDASEIELMKATKAANAHGFISRMPEGYQS 965 (1082)
Q Consensus 886 l~~p~~G~I~idG~di~~i~~~~lR~~i~~VpQdp~Lf~gTIreNl~~~~~~~~d~ei~~al~~a~l~~~i~~lp~gldt 965 (1082)
|||.++|+|.|||+||+.+..+.||++||+||||.+||++||.+||.|+.|.+++||+.+|++.|++||-|.++|+||+|
T Consensus 587 ffdv~sGsI~iDgqdIrnvt~~SLRs~IGVVPQDtvLFNdTI~yNIryak~~AsneevyaAAkAA~IHdrIl~fPegY~t 666 (790)
T KOG0056|consen 587 FFDVNSGSITIDGQDIRNVTQSSLRSSIGVVPQDTVLFNDTILYNIRYAKPSASNEEVYAAAKAAQIHDRILQFPEGYNT 666 (790)
T ss_pred HhhccCceEEEcCchHHHHHHHHHHHhcCcccCcceeecceeeeheeecCCCCChHHHHHHHHHhhHHHHHhcCchhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCCChhHHHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhccCEEEEEe
Q 001411 966 HVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLMEGRTTIMVAHRLSTIRNADKIAVLQ 1045 (1082)
Q Consensus 966 ~v~e~G~~LSgGQrQrlaLARAlL~~~~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~~DrI~Vl~ 1045 (1082)
.|||+|-.||||||||+||||++|++|.|++||||||+||..||+.||.++.+..+++|.|+|||||+||.+||.|+|++
T Consensus 667 ~VGERGLkLSGGEKQRVAiARtiLK~P~iIlLDEATSALDT~tER~IQaaL~rlca~RTtIVvAHRLSTivnAD~ILvi~ 746 (790)
T KOG0056|consen 667 RVGERGLKLSGGEKQRVAIARTILKAPSIILLDEATSALDTNTERAIQAALARLCANRTTIVVAHRLSTIVNADLILVIS 746 (790)
T ss_pred hhhhcccccCCcchhhHHHHHHHhcCCcEEEEcchhhhcCCccHHHHHHHHHHHhcCCceEEEeeeehheecccEEEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEecChHHHhhhccchHHHHHHHhhc
Q 001411 1046 QGKVAEIGSHEQLLRKENGIYKQLIRLQQD 1075 (1082)
Q Consensus 1046 ~G~ive~G~~~eLl~~~~g~f~~l~~~~~~ 1075 (1082)
+|+|+|.|+|+||+++++|.|++||+.|+.
T Consensus 747 ~G~IvErG~HeeLl~rdgG~Ya~MWq~qqa 776 (790)
T KOG0056|consen 747 NGRIVERGRHEELLKRDGGAYADMWQAQQA 776 (790)
T ss_pred CCeEeecCcHHHHHhccCCcHHHHHHHHHh
Confidence 999999999999999889999999977653
|
|
| >KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-81 Score=697.94 Aligned_cols=514 Identities=29% Similarity=0.442 Sum_probs=438.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccccccCCChhHHHHHHHhhHHHHHHHHHHH
Q 001411 553 DQVALIFVGLAVVTIPVYLLQHYFYTLMGEHLTARVRLSMFSAILSNEIGWFDLDENNTGLLISTLAADATLVRSALADR 632 (1082)
Q Consensus 553 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~l~~~~~ffd~~~~~~G~il~r~s~D~~~i~~~~~~~ 632 (1082)
...+..|.++.+...++.-++.+++.+..+++.+..-.++|++.++++++||.. ..+|.+.+...+-...+...+...
T Consensus 74 ~~~~~~y~iar~~s~~F~el~~~vfa~v~q~~iR~~~~~vf~~~~~ld~~~~~~--~~tG~l~~~idRgsraI~~vl~~~ 151 (591)
T KOG0057|consen 74 TALLAGYGIARLGSSVFNELRNFVFAKVAQRVIRDSSSDVFRHLMSLDLSFFLS--RGTGALNRIIDRGSRAISFVLSAM 151 (591)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhcC--CCcchHHHHHHhhhhHHHHHHHHH
Confidence 345678888899999999999999999999999999999999999999999975 678988888888877777777666
Q ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHccHHHHHHcC
Q 001411 633 LSIIVQNVALTVTAFVIA-FILSWRLAAVVAASLPLLIGAFVAEQLFLKGFGGDYNRAYSRATSVAREAIANIRTVAAYG 711 (1082)
Q Consensus 633 l~~~~~~~~~~~~~~~~~-~~~~~~l~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~tIra~~ 711 (1082)
+..++..++-+......+ .-..+..+++.+.++.....+.+.......++.++++++...+.+.+.+++.+.++||+||
T Consensus 152 V~~i~p~~~~i~~v~~~l~~~~Ga~~~li~~~~v~~Y~a~Ti~~t~~Rn~fR~~~N~Adn~as~~~~dsL~Nye~VKsfN 231 (591)
T KOG0057|consen 152 VFNIIPTLFEIALVSGILYYKFGAAFALITLGTVGAYAAFTIVVTRWRNRFRKAMNNADNSASRRAYDSLINYEIVKSFN 231 (591)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHhheeEEeehhHHHHHHHHHHhhhhHHHHHHHHHHhhHHHHHHcc
Confidence 666665555444333222 2334444444444444444444455555556677888899999999999999999999999
Q ss_pred cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Q 001411 712 IEKRISIQFASELSQPNKQALLRGHISGFGYGVSQLLSLCSYALGLWYASVLIKQKGSNFGDIMKSFMVLIITALAVAET 791 (1082)
Q Consensus 712 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 (1082)
.|++..++|...+.++.+...+....-++.......+.........+++..-+..+.+++|++............++..+
T Consensus 232 nE~~Ea~~y~~~l~~~~~~~~~~~~sl~~lnfgQ~~iFsv~~~~im~l~~~gi~~~~mtvgdlv~~n~l~~qL~~~l~~L 311 (591)
T KOG0057|consen 232 NEEYEASRYDGSLKTYERAGLKYSSSLAFLNFGQKAIFSVALTFIMVLGSNGIAAGKMTVGDLVMVNSLLFQLSLPLNFL 311 (591)
T ss_pred cHHHHHHHHHHHHHHHHHhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccccchhhHHHHHHHHHhHHHHH
Confidence 99999999999999999988888777777777777777777777788888778888999999888777777777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcccccCCCCCCCCcccccccccEEEEeEEEECCCCCCcccccceeEEeeCCcEEEEEcC
Q 001411 792 LALAPDIVKGSQALGPVFGILYRKTAIQPDDPASKEVTEIKGNIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQ 871 (1082)
Q Consensus 792 ~~~~~~~~~~~~a~~ri~~~~~~~~~~~~~~~~~~~~~~~~g~I~~~~Vs~~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~ 871 (1082)
...+..+.++..-+...+...+...... + ...++...+|.|+|+||+|+|+ |++++|+++||+|++||||||||+
T Consensus 312 g~vyr~~~q~l~Dm~~~~~l~~~~~~i~--~-~~~~i~~~~~~I~F~dV~f~y~--~k~~iL~gvsf~I~kGekVaIvG~ 386 (591)
T KOG0057|consen 312 GSVYRELRQALTDMRTLFILLEVDEDIQ--E-AALPIELFGGSIEFDDVHFSYG--PKRKVLKGVSFTIPKGEKVAIVGS 386 (591)
T ss_pred HHHHHHHHHHHHhHHHHHhhhhhhhhhh--h-ccCCcccCCCcEEEEeeEEEeC--CCCceecceeEEecCCCEEEEECC
Confidence 7777777766666555554432211111 1 0112334567899999999997 566799999999999999999999
Q ss_pred CCCCHHHHHHHHhccccCCccEEEECCccCCCCCHHHHhcceEEEcccCccccccHHHHhccCCCCCCHHHHHHHHHHhc
Q 001411 872 SGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRKIGLVQQEPALFSTTIYENIKYGNEDASEIELMKATKAAN 951 (1082)
Q Consensus 872 sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR~~i~~VpQdp~Lf~gTIreNl~~~~~~~~d~ei~~al~~a~ 951 (1082)
|||||||++++|+||++ ++|+|+|||+||++++++.+|+.|||||||.+||++||-+||.||++.+++||+.++||+++
T Consensus 387 nGsGKSTilr~LlrF~d-~sG~I~IdG~dik~~~~~SlR~~Ig~VPQd~~LFndTIl~NI~YGn~sas~eeV~e~~k~a~ 465 (591)
T KOG0057|consen 387 NGSGKSTILRLLLRFFD-YSGSILIDGQDIKEVSLESLRQSIGVVPQDSVLFNDTILYNIKYGNPSASDEEVVEACKRAG 465 (591)
T ss_pred CCCCHHHHHHHHHHHhc-cCCcEEECCeeHhhhChHHhhhheeEeCCcccccchhHHHHhhcCCCCcCHHHHHHHHHHcC
Confidence 99999999999999999 89999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhCcccccccccCCCCCCChhHHHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEecC
Q 001411 952 AHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLMEGRTTIMVAHR 1031 (1082)
Q Consensus 952 l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlaLARAlL~~~~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHr 1031 (1082)
+||.|.++|+||+|.|||+|..||||||||++||||+|++|+|+++|||||+||.+||+.|.++|.....++|+|+|+||
T Consensus 466 ~hd~i~~l~~GY~T~VGerG~~LSGGekQrvslaRa~lKda~Il~~DEaTS~LD~~TE~~i~~~i~~~~~~rTvI~IvH~ 545 (591)
T KOG0057|consen 466 LHDVISRLPDGYQTLVGERGLMLSGGEKQRVSLARAFLKDAPILLLDEATSALDSETEREILDMIMDVMSGRTVIMIVHR 545 (591)
T ss_pred cHHHHHhccccchhhHhhcccccccchHHHHHHHHHHhcCCCeEEecCcccccchhhHHHHHHHHHHhcCCCeEEEEEec
Confidence 99999999999999999999999999999999999999999999999999999999999999999998899999999999
Q ss_pred chhhhccCEEEEEeCCEEEEecChHHHhhhccchHHHHHHHhhc
Q 001411 1032 LSTIRNADKIAVLQQGKVAEIGSHEQLLRKENGIYKQLIRLQQD 1075 (1082)
Q Consensus 1032 l~ti~~~DrI~Vl~~G~ive~G~~~eLl~~~~g~f~~l~~~~~~ 1075 (1082)
++++.+||+|+|||+|+|+|+|+|+||++ +++.|+.+|..|..
T Consensus 546 l~ll~~~DkI~~l~nG~v~e~gth~ell~-~s~~~~~~w~~~~~ 588 (591)
T KOG0057|consen 546 LDLLKDFDKIIVLDNGTVKEYGTHSELLA-PSELYADLWTTQTS 588 (591)
T ss_pred chhHhcCCEEEEEECCeeEEeccHHHHhh-hhhHHHHHhccccc
Confidence 99999999999999999999999999999 89999999987653
|
|
| >TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-80 Score=774.20 Aligned_cols=557 Identities=29% Similarity=0.434 Sum_probs=485.1
Q ss_pred chhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCchhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001411 507 AEWPYAVLGSVGAILAGMEAPLFALGITHILTAFYSPHDSQIKRVVDQVALIFVGLAVVTIPVYLLQHYFYTLMGEHLTA 586 (1082)
Q Consensus 507 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 586 (1082)
++++.+...++.+++..+.....++.+..+++....... ......+..+++++.++..++.+++.++....+.++..
T Consensus 136 ~~~~~~~~~~~~s~~~~ll~l~~p~~~~~iid~v~~~~~---~~~l~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 212 (694)
T TIGR01846 136 RYRKQFREVLLISLALQLFALVTPLLFQVVIDKVLVHRG---LSTLSVLALAMLAVAIFEPALGGLRTYLFAHLTSRIDV 212 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333444455555554432211 11233344555666667788889999999999999999
Q ss_pred HHHHHHHHHHHhCCCccccccCCChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001411 587 RVRLSMFSAILSNEIGWFDLDENNTGLLISTLAADATLVRSALADRLSIIVQNVALTVTAFVIAFILSWRLAAVVAASLP 666 (1082)
Q Consensus 587 ~l~~~l~~~~l~~~~~ffd~~~~~~G~il~r~s~D~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~p 666 (1082)
++|.++++++++.|++||+. +++|++++|+ +|++.+++.+...+...+.+++.+++.++++++++|.+++++++++|
T Consensus 213 ~l~~~~~~~l~~l~~~~f~~--~~~g~~~~rl-~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~~~~ 289 (694)
T TIGR01846 213 ELGARLYRHLLGLPLGYFES--RRVGDTVARV-RELEQIRNFLTGSALTVVLDLLFVVVFLAVMFFYSPTLTGVVIGSLV 289 (694)
T ss_pred HHHHHHHHHHHcCCHHHcCC--CCHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999975 8999999999 69999999998888888877777777788899999999999999999
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHccHHHHHHcCcHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 001411 667 LLIGAFVAEQLFLKGFGGDYNRAYSRATSVAREAIANIRTVAAYGIEKRISIQFASELSQPNKQALLRGHISGFGYGVSQ 746 (1082)
Q Consensus 667 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~tIra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 746 (1082)
+++++.++..+..++..++..+...+..+++.|+++|+++||+||.++.+.++|.+..++..+...+......+...+..
T Consensus 290 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (694)
T TIGR01846 290 CYALLSVFVGPILRKRVEDKFERSAAATSFLVESVTGIETIKATATEPQFQNRWDRQLAAYVAASFRVTNLGNIAGQAIE 369 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 98888877777777777777777888899999999999999999999999999999999999999988888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCCCCCc
Q 001411 747 LLSLCSYALGLWYASVLIKQKGSNFGDIMKSFMVLIITALAVAETLALAPDIVKGSQALGPVFGILYRKTAIQPDDPASK 826 (1082)
Q Consensus 747 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~~~~~~~~~~~~~~~~ 826 (1082)
++..+..++.+|+|.+++..|.++.|.++++..+......++..+...+..+..+..+.+|+.++++.+++.+.. ...
T Consensus 370 ~i~~~~~~~il~~g~~lv~~g~it~G~lia~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~~--~~~ 447 (694)
T TIGR01846 370 LIQKLTFAILLWFGAHLVIGGALSPGQLVAFNMLAGRVTQPVLRLAQLWQDFQQTGIALERLGDILNSPTEPRSA--GLA 447 (694)
T ss_pred HHHHHHHHHhHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCccCC--CCC
Confidence 888888889999999999999999999999888888889999999999999999999999999998765543221 111
Q ss_pred ccccccccEEEEeEEEECCCCCCcccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCccCCCCCH
Q 001411 827 EVTEIKGNIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNL 906 (1082)
Q Consensus 827 ~~~~~~g~I~~~~Vs~~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~ 906 (1082)
..+...|.|+|+||+|+|++. ++++|+|+||+|+|||++||||+||||||||+++|+|+|+|++|+|++||+|+++++.
T Consensus 448 ~~~~~~~~i~~~~vsf~y~~~-~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~~G~I~idg~~i~~~~~ 526 (694)
T TIGR01846 448 ALPELRGAITFENIRFRYAPD-SPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDLAIADP 526 (694)
T ss_pred CCCCCCCeEEEEEEEEEcCCC-CccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEehhhCCH
Confidence 122345789999999999733 3579999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcceEEEcccCccccccHHHHhccCCCCCCHHHHHHHHHHhcHHHHHhhCcccccccccCCCCCCChhHHHHHHHHH
Q 001411 907 RSLRRKIGLVQQEPALFSTTIYENIKYGNEDASEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIAR 986 (1082)
Q Consensus 907 ~~lR~~i~~VpQdp~Lf~gTIreNl~~~~~~~~d~ei~~al~~a~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlaLAR 986 (1082)
+++|++|+||||||++|+|||||||.++.++++++++++|++.+++++++.++|+||||.++++|.+||||||||++|||
T Consensus 527 ~~~r~~i~~v~q~~~lf~~ti~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~qri~lAR 606 (694)
T TIGR01846 527 AWLRRQMGVVLQENVLFSRSIRDNIALCNPGAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQRIAIAR 606 (694)
T ss_pred HHHHHhCeEEccCCeehhhhHHHHHhcCCCCCCHHHHHHHHHHcChHHHHHhCcCccCcEecCCCCCCCHHHHHHHHHHH
Confidence 99999999999999999999999999988889999999999999999999999999999999999999999999999999
Q ss_pred HHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhccCEEEEEeCCEEEEecChHHHhhhccchH
Q 001411 987 AILKNPSILLLDEATSALDTASENLIQEALDKLMEGRTTIMVAHRLSTIRNADKIAVLQQGKVAEIGSHEQLLRKENGIY 1066 (1082)
Q Consensus 987 AlL~~~~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~~DrI~Vl~~G~ive~G~~~eLl~~~~g~f 1066 (1082)
|++++|+|||||||||+||++|++.+.+.|++..+++|+|+||||++++..||+|+||++|+|+|.|+|++|++ ++|.|
T Consensus 607 all~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~ii~l~~G~i~~~g~~~~l~~-~~~~y 685 (694)
T TIGR01846 607 ALVGNPRILIFDEATSALDYESEALIMRNMREICRGRTVIIIAHRLSTVRACDRIIVLEKGQIAESGRHEELLA-LQGLY 685 (694)
T ss_pred HHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHhCCCEEEEEeCChHHHHhCCEEEEEeCCEEEEeCCHHHHHH-cCChH
Confidence 99999999999999999999999999999999888999999999999999999999999999999999999998 57999
Q ss_pred HHHHHHh
Q 001411 1067 KQLIRLQ 1073 (1082)
Q Consensus 1067 ~~l~~~~ 1073 (1082)
++|++.|
T Consensus 686 ~~l~~~~ 692 (694)
T TIGR01846 686 ARLWQQQ 692 (694)
T ss_pred HHHHHhh
Confidence 9999865
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-80 Score=686.57 Aligned_cols=503 Identities=25% Similarity=0.377 Sum_probs=427.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccccccCCChhHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 001411 561 GLAVVTIPVYLLQHYFYTLMGEHLTARVRLSMFSAILSNEIGWFDLDENNTGLLISTLAADATLVRSALADRLSIIVQNV 640 (1082)
Q Consensus 561 ~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~l~~~~~ffd~~~~~~G~il~r~s~D~~~i~~~~~~~l~~~~~~~ 640 (1082)
++++...+..++..++.+.+..++...+|.++|+++...+..-.. ...+|+++||++.|++.+|+.+-..+...+..+
T Consensus 66 ~~aI~Rt~~RY~ERlvsH~AtfrvL~~lRv~~f~kl~p~sp~~~~--r~r~gdLL~RLvaDVd~Ld~lyLRvi~P~~~a~ 143 (573)
T COG4987 66 GLAILRTAARYVERLVSHDATFRVLSALRVRLFEKLEPLSPALLL--RYRSGDLLNRLVADVDALDNLYLRVIAPAVVAL 143 (573)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccCChHHHH--hcChHhHHHHHHhhHHHHhhHHHHHHhhHHHHH
Confidence 466777788888888999999999999999999999887766554 367999999999999999999999888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHccHHHHHHcCcHHHHHHH
Q 001411 641 ALTVTAFVIAFILSWRLAAVVAASLP-LLIGAFVAEQLFLKGFGGDYNRAYSRATSVAREAIANIRTVAAYGIEKRISIQ 719 (1082)
Q Consensus 641 ~~~~~~~~~~~~~~~~l~~~~l~~~p-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~tIra~~~~~~~~~~ 719 (1082)
....+..+...+++|.+++.+..++. +++++.++..++-++..+..+.......+++.|.+.|....+.||.++.+.+.
T Consensus 144 ~~~~~~~i~L~f~~~~~Alll~~~ll~~lli~P~~~~~~~~~~~~~l~~~r~~lr~~~td~v~G~~EL~~~g~~~~~~~~ 223 (573)
T COG4987 144 VLIAVVTIGLSFFSIPLALLLGLILLLLLLIIPTLFYRAGRKFGAHLAQGRAALRSQFTDWVQGQAELLIFGAEDAYRTA 223 (573)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHcccHHHHHHH
Confidence 77777777777888888765554433 33344555666677777888888889999999999999999999999999999
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHH-HHHHH
Q 001411 720 FASELSQPNKQALLRGHISGFGYGVSQLLSLCSYA-LGLWYASVLIKQKGSNFGDIMKSFMVLIITALAVAETL-ALAPD 797 (1082)
Q Consensus 720 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 797 (1082)
+.+..+...+.+.+...+..|.....+++..+... ..+|.+. .+..|..+......+++..+....++..+. .....
T Consensus 224 l~~~e~~~~~~q~k~~~~~~~~~a~~~l~~g~~v~~~l~w~a~-~~~~G~~~~~~aa~~ll~~f~~~eaf~~L~~~A~~~ 302 (573)
T COG4987 224 LEATEASWLKAQRKQARFTGLSDAILLLIAGLLVIGLLLWMAA-QVGAGALAQPGAALALLVIFAALEAFEPLAPGAFQH 302 (573)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcCCCcchhHHHHHHHHHHHHHHHHhhhcchhHHH
Confidence 99999999999999999999988888887776666 5555554 233444443222222222222222222222 33456
Q ss_pred HHHHHHHHHHHHHhhcccccCCCCCCCCcccccccccEEEEeEEEECCCCCCcccccceeEEeeCCcEEEEEcCCCCCHH
Q 001411 798 IVKGSQALGPVFGILYRKTAIQPDDPASKEVTEIKGNIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKS 877 (1082)
Q Consensus 798 ~~~~~~a~~ri~~~~~~~~~~~~~~~~~~~~~~~~g~I~~~~Vs~~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKS 877 (1082)
..+...+..|+.++.+.+++...+.++ .+...-.++++||||+|+++ +.++|+|+||++++||||||+||||||||
T Consensus 303 lgq~~~Sa~Rl~~i~~q~~e~~~~~~~---~~~~~~~l~~~~vsF~y~~~-~~~~L~~~~l~l~~GEkvAIlG~SGsGKS 378 (573)
T COG4987 303 LGQVIASARRLNDILDQKPEVTFPDEQ---TATTGQALELRNVSFTYPGQ-QTKALKNFNLTLAQGEKVAILGRSGSGKS 378 (573)
T ss_pred hhHHHHHHHHHhhhccCCcccCCCccc---cCCccceeeeccceeecCCC-ccchhhccceeecCCCeEEEECCCCCCHH
Confidence 667788899999988877665443111 11111179999999999854 55899999999999999999999999999
Q ss_pred HHHHHHhccccCCccEEEECCccCCCCCHHHHhcceEEEcccCccccccHHHHhccCCCCCCHHHHHHHHHHhcHHHHHh
Q 001411 878 TVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRKIGLVQQEPALFSTTIYENIKYGNEDASEIELMKATKAANAHGFIS 957 (1082)
Q Consensus 878 TL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR~~i~~VpQdp~Lf~gTIreNl~~~~~~~~d~ei~~al~~a~l~~~i~ 957 (1082)
|++++|.|.|+|++|+|..+|++++.++.+++|+.|++++|.++||++|+|+||..++|++||||+|+++++++++++++
T Consensus 379 TllqLl~~~~~~~~G~i~~~g~~~~~l~~~~~~e~i~vl~Qr~hlF~~Tlr~NL~lA~~~AsDEel~~aL~qvgL~~l~~ 458 (573)
T COG4987 379 TLLQLLAGAWDPQQGSITLNGVEIASLDEQALRETISVLTQRVHLFSGTLRDNLRLANPDASDEELWAALQQVGLEKLLE 458 (573)
T ss_pred HHHHHHHhccCCCCCeeeECCcChhhCChhhHHHHHhhhccchHHHHHHHHHHHhhcCCCCCHHHHHHHHHHcCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCcccccccccCCCCCCChhHHHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhc
Q 001411 958 RMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLMEGRTTIMVAHRLSTIRN 1037 (1082)
Q Consensus 958 ~lp~gldt~v~e~G~~LSgGQrQrlaLARAlL~~~~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~ 1037 (1082)
+.|+||+|++||+|.+||||||||++|||+||++.|++||||||.+||++||++|.+.|.+..+|+|+|+||||+..++.
T Consensus 459 ~~p~gl~t~lge~G~~LSGGE~rRLAlAR~LL~dapl~lLDEPTegLD~~TE~~vL~ll~~~~~~kTll~vTHrL~~le~ 538 (573)
T COG4987 459 SAPDGLNTWLGEGGRRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLALLFEHAEGKTLLMVTHRLRGLER 538 (573)
T ss_pred hChhhhhchhccCCCcCCchHHHHHHHHHHHHcCCCeEEecCCcccCChhhHHHHHHHHHHHhcCCeEEEEecccccHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCEEEEEeCCEEEEecChHHHhhhccchHHHHHH
Q 001411 1038 ADKIAVLQQGKVAEIGSHEQLLRKENGIYKQLIR 1071 (1082)
Q Consensus 1038 ~DrI~Vl~~G~ive~G~~~eLl~~~~g~f~~l~~ 1071 (1082)
||||+|||+|+++|+|+|.+|++ ++|.|++|++
T Consensus 539 ~drIivl~~Gkiie~G~~~~Ll~-~~g~~~~l~q 571 (573)
T COG4987 539 MDRIIVLDNGKIIEEGTHAELLA-NNGRYKRLYQ 571 (573)
T ss_pred cCEEEEEECCeeeecCCHHhhhc-cccHHHHHhc
Confidence 99999999999999999999998 6899999975
|
|
| >TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-79 Score=752.85 Aligned_cols=562 Identities=33% Similarity=0.537 Sum_probs=499.3
Q ss_pred HHHhcchhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCchhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001411 502 LKLNAAEWPYAVLGSVGAILAGMEAPLFALGITHILTAFYSPHDSQIKRVVDQVALIFVGLAVVTIPVYLLQHYFYTLMG 581 (1082)
Q Consensus 502 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 581 (1082)
+.+.+..++.++++.++.++.++..+..++.+..++...+.... ......+..+++++.++..++.+++.++..+.+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~---~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 82 (571)
T TIGR02203 6 WSYVRPYKAGLVLAGVAMILVAATESTLAALLKPLLDDGFGGRD---RSVLWWVPLVVIGLAVLRGICSFVSTYLLSWVS 82 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCc---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344555666666666666666666666666666654443221 112233444566777777888889999999999
Q ss_pred HHHHHHHHHHHHHHHHhCCCccccccCCChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001411 582 EHLTARVRLSMFSAILSNEIGWFDLDENNTGLLISTLAADATLVRSALADRLSIIVQNVALTVTAFVIAFILSWRLAAVV 661 (1082)
Q Consensus 582 ~~~~~~l~~~l~~~~l~~~~~ffd~~~~~~G~il~r~s~D~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 661 (1082)
.++...+|..+++++++.|.++|+. .+.|++++|+++|++.+++.+...+..++.+++.+++.++++++++|.+++++
T Consensus 83 ~~~~~~lr~~l~~~~~~~~~~~~~~--~~~g~~~~~l~~di~~i~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~l~~i~ 160 (571)
T TIGR02203 83 NKVVRDIRVRMFEKLLGLPVSFFDR--QPTGTLLSRITFDSEQVASAATDAFIVLVRETLTVIGLFIVLLYYSWQLTLIV 160 (571)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHhCC--CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 9999999999999999999999974 78999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHccHHHHHHcCcHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 001411 662 AASLPLLIGAFVAEQLFLKGFGGDYNRAYSRATSVAREAIANIRTVAAYGIEKRISIQFASELSQPNKQALLRGHISGFG 741 (1082)
Q Consensus 662 l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~tIra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 741 (1082)
+++.|+.+++.++..+..+....+..+...+..+.+.|.++|+.+||+++.++++.++|.+..++..+...+......+.
T Consensus 161 l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (571)
T TIGR02203 161 VVMLPVLSILMRRVSKRLRRISKEIQNSMGQVTTVAEETLQGYRVVKLFGGQAYETRRFDAVSNRNRRLAMKMTSAGSIS 240 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999998888888888888888888888999999999999999999999999999999999999999888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCC
Q 001411 742 YGVSQLLSLCSYALGLWYASVLIKQKGSNFGDIMKSFMVLIITALAVAETLALAPDIVKGSQALGPVFGILYRKTAIQPD 821 (1082)
Q Consensus 742 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~~~~~~~~~~~ 821 (1082)
..+...+..+...+.+++|..++..|.+++|.++++..+......++..+...+..+..+..+.+|+.++++.+++.+..
T Consensus 241 ~~~~~~~~~~~~~~~~~~g~~~~~~g~lt~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~ 320 (571)
T TIGR02203 241 SPITQLIASLALAVVLFIALFQAQAGSLTAGDFTAFITAMIALIRPLKSLTNVNAPMQRGLAAAESLFTLLDSPPEKDTG 320 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCC
Confidence 88888888888889999999999999999999999999999999999999999999999999999999998765442211
Q ss_pred CCCCcccccccccEEEEeEEEECCCCCCcccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCccC
Q 001411 822 DPASKEVTEIKGNIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDI 901 (1082)
Q Consensus 822 ~~~~~~~~~~~g~I~~~~Vs~~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di 901 (1082)
. ....+..+.|+|+||+|+|+++ +.++|+|+||+|+|||+++|+|+||||||||+++|+|+|+|++|+|++||+|+
T Consensus 321 ~---~~~~~~~~~i~~~~v~f~y~~~-~~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~i~g~~i 396 (571)
T TIGR02203 321 T---RAIERARGDVEFRNVTFRYPGR-DRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDL 396 (571)
T ss_pred C---CCCCCCCCeEEEEEEEEEcCCC-CCccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEeH
Confidence 1 1112345679999999999743 45799999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHhcceEEEcccCccccccHHHHhccCCC-CCCHHHHHHHHHHhcHHHHHhhCcccccccccCCCCCCChhHHH
Q 001411 902 RTLNLRSLRRKIGLVQQEPALFSTTIYENIKYGNE-DASEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQ 980 (1082)
Q Consensus 902 ~~i~~~~lR~~i~~VpQdp~Lf~gTIreNl~~~~~-~~~d~ei~~al~~a~l~~~i~~lp~gldt~v~e~G~~LSgGQrQ 980 (1082)
++++.+++|++++||||||++|+|||||||.++.+ +.+|++++++++.+++++++.++|+||||.+|++|.+|||||||
T Consensus 397 ~~~~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgGqrQ 476 (571)
T TIGR02203 397 ADYTLASLRRQVALVSQDVVLFNDTIANNIAYGRTEQADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQRQ 476 (571)
T ss_pred HhcCHHHHHhhceEEccCcccccccHHHHHhcCCCCCCCHHHHHHHHHHcChHHHHHhCcCcccceecCCCCcCCHHHHH
Confidence 99999999999999999999999999999999876 79999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhccCEEEEEeCCEEEEecChHHHhh
Q 001411 981 RVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLMEGRTTIMVAHRLSTIRNADKIAVLQQGKVAEIGSHEQLLR 1060 (1082)
Q Consensus 981 rlaLARAlL~~~~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~~DrI~Vl~~G~ive~G~~~eLl~ 1060 (1082)
|||||||++++|+|||||||||+||++|++.|.+.|++..+++|+|+||||++.+..||+|++|++|+++|.|+|+++++
T Consensus 477 RiaLARall~~~~illLDEpts~LD~~~~~~i~~~L~~~~~~~tiIiitH~~~~~~~~D~ii~l~~g~i~~~g~~~~l~~ 556 (571)
T TIGR02203 477 RLAIARALLKDAPILILDEATSALDNESERLVQAALERLMQGRTTLVIAHRLSTIEKADRIVVMDDGRIVERGTHNELLA 556 (571)
T ss_pred HHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhCCCEEEEEehhhHHHHhCCEEEEEeCCEEEeeCCHHHHHH
Confidence 99999999999999999999999999999999999999888999999999999999999999999999999999999998
Q ss_pred hccchHHHHHHHh
Q 001411 1061 KENGIYKQLIRLQ 1073 (1082)
Q Consensus 1061 ~~~g~f~~l~~~~ 1073 (1082)
.++.|+++++.+
T Consensus 557 -~~~~~~~~~~~~ 568 (571)
T TIGR02203 557 -RNGLYAQLHNMQ 568 (571)
T ss_pred -cCCHHHHHHHHh
Confidence 478999998765
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes. |
| >PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-79 Score=745.76 Aligned_cols=565 Identities=28% Similarity=0.415 Sum_probs=473.7
Q ss_pred HHHHHHHhcchhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCchhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001411 498 IWELLKLNAAEWPYAVLGSVGAILAGMEAPLFALGITHILTAFYSPHDSQIKRVVDQVALIFVGLAVVTIPVYLLQHYFY 577 (1082)
Q Consensus 498 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 577 (1082)
++++..+.++.++.+.+.++..++..+.....++.+..+++...... ....+..+++++.++..+..++..++.
T Consensus 7 ~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~iid~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (588)
T PRK13657 7 YARVLQYLGAEKRLGILLAVANVLLAAATFAEPILFGRIIDAISGKG------DIFPLLAAWAGFGLFNIIAGVLVARHA 80 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc------cHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444555555555555555555555555566666665543321 111222333333333333444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCccccccCCChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001411 578 TLMGEHLTARVRLSMFSAILSNEIGWFDLDENNTGLLISTLAADATLVRSALADRLSIIVQNVALTVTAFVIAFILSWRL 657 (1082)
Q Consensus 578 ~~~~~~~~~~l~~~l~~~~l~~~~~ffd~~~~~~G~il~r~s~D~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l 657 (1082)
.+...+...+++.++++++++.|..+|+. .+.|++++|+++|++.+...+...+..++..++..++.+++++.++|.+
T Consensus 81 ~~~~~~~~~~l~~~l~~~l~~~~~~~~~~--~~~g~~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 158 (588)
T PRK13657 81 DRLAHRRRLAVLTEYFERIIQLPLAWHSQ--RGSGRALHTLLRGTDALFGLWLEFMREHLATLVALVVLLPLALFMNWRL 158 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCHHHHCc--CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555666667779999999999999974 7999999999999999998888888888888888888888889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHccHHHHHHcCcHHHHHHHHHHHHhhHHHHHHHHHHH
Q 001411 658 AAVVAASLPLLIGAFVAEQLFLKGFGGDYNRAYSRATSVAREAIANIRTVAAYGIEKRISIQFASELSQPNKQALLRGHI 737 (1082)
Q Consensus 658 ~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~tIra~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 737 (1082)
++++++++|+.+++.....+..+....+..+...+..+++.|.++|+++||+||.++.+.+++.+..++..+...+....
T Consensus 159 ~l~~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (588)
T PRK13657 159 SLVLVVLGIVYTLITTLVMRKTKDGQAAVEEHYHDLFAHVSDAIGNVSVVQSYNRIEAETQALRDIADNLLAAQMPVLSW 238 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99998888888777666666666666677777788889999999999999999999999999999999998888888777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc
Q 001411 738 SGFGYGVSQLLSLCSYALGLWYASVLIKQKGSNFGDIMKSFMVLIITALAVAETLALAPDIVKGSQALGPVFGILYRKTA 817 (1082)
Q Consensus 738 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~~~~~~~ 817 (1082)
..+...+.+++..+...+.+++|.+++..|.+++|.++++..+......++..+...+..+..+..+.+|+.++++.+++
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~~~a~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~~~~ 318 (588)
T PRK13657 239 WALASVLNRAASTITMLAILVLGAALVQKGQLRVGEVVAFVGFATLLIGRLDQVVAFINQVFMAAPKLEEFFEVEDAVPD 318 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcc
Confidence 77777788888888888899999999999999999999988888888888888888899999999999999998775443
Q ss_pred CCCCCCCCcccccccccEEEEeEEEECCCCCCcccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEEC
Q 001411 818 IQPDDPASKEVTEIKGNIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLID 897 (1082)
Q Consensus 818 ~~~~~~~~~~~~~~~g~I~~~~Vs~~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~id 897 (1082)
.+.. +......+..+.|+|+||+|+|++ +.++|+|+||+|+|||++||+|+||||||||+++|+|+|+|++|+|.+|
T Consensus 319 ~~~~-~~~~~~~~~~~~I~~~~vsf~y~~--~~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I~i~ 395 (588)
T PRK13657 319 VRDP-PGAIDLGRVKGAVEFDDVSFSYDN--SRQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILID 395 (588)
T ss_pred cCCC-CCCCCcCCCCCeEEEEEEEEEeCC--CCceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEEC
Confidence 2111 111111223467999999999973 3469999999999999999999999999999999999999999999999
Q ss_pred CccCCCCCHHHHhcceEEEcccCccccccHHHHhccCCCCCCHHHHHHHHHHhcHHHHHhhCcccccccccCCCCCCChh
Q 001411 898 GYDIRTLNLRSLRRKIGLVQQEPALFSTTIYENIKYGNEDASEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGG 977 (1082)
Q Consensus 898 G~di~~i~~~~lR~~i~~VpQdp~Lf~gTIreNl~~~~~~~~d~ei~~al~~a~l~~~i~~lp~gldt~v~e~G~~LSgG 977 (1082)
|+|+++++.+++|++|+||||||.+|+|||||||.++.++.+|++++++++.+++++++.++|+|+||.++++|.+||||
T Consensus 396 g~~i~~~~~~~~r~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSgG 475 (588)
T PRK13657 396 GTDIRTVTRASLRRNIAVVFQDAGLFNRSIEDNIRVGRPDATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGG 475 (588)
T ss_pred CEEhhhCCHHHHHhheEEEecCcccccccHHHHHhcCCCCCCHHHHHHHHHHhCHHHHHHhCcccccchhcCCCCCCCHH
Confidence 99999999999999999999999999999999999988889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhccCEEEEEeCCEEEEecChHH
Q 001411 978 QKQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLMEGRTTIMVAHRLSTIRNADKIAVLQQGKVAEIGSHEQ 1057 (1082)
Q Consensus 978 QrQrlaLARAlL~~~~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~~DrI~Vl~~G~ive~G~~~e 1057 (1082)
|||||||||||+++|+|||||||||+||++|++.|.+.|++..+++|+|+||||+++++.||+|++|++|+++|.|+|++
T Consensus 476 q~QRialARall~~~~iliLDEpts~LD~~t~~~i~~~l~~~~~~~tvIiitHr~~~~~~~D~ii~l~~G~i~~~g~~~~ 555 (588)
T PRK13657 476 ERQRLAIARALLKDPPILILDEATSALDVETEAKVKAALDELMKGRTTFIIAHRLSTVRNADRILVFDNGRVVESGSFDE 555 (588)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhcCCEEEEEEecHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999999998878999999999999999999999999999999999999
Q ss_pred HhhhccchHHHHHHHhh
Q 001411 1058 LLRKENGIYKQLIRLQQ 1074 (1082)
Q Consensus 1058 Ll~~~~g~f~~l~~~~~ 1074 (1082)
|++ +++.|++|++.+.
T Consensus 556 l~~-~~~~y~~l~~~~~ 571 (588)
T PRK13657 556 LVA-RGGRFAALLRAQG 571 (588)
T ss_pred HHH-CCChHHHHHHHhh
Confidence 998 5799999998664
|
|
| >TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-78 Score=744.69 Aligned_cols=563 Identities=33% Similarity=0.542 Sum_probs=484.8
Q ss_pred hcchhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCchhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001411 505 NAAEWPYAVLGSVGAILAGMEAPLFALGITHILTAFYSPHDSQIKRVVDQVALIFVGLAVVTIPVYLLQHYFYTLMGEHL 584 (1082)
Q Consensus 505 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 584 (1082)
.+..++.+.+.+++.++.++.....++.+..+++..+.... ......+..+++++.++..+..+++.++..+.+.++
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iid~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (576)
T TIGR02204 13 VRPYRGRVLAALVALLITAAATLSLPYAVRLMIDHGFSKDS---SGLLNRYFAFLLVVALVLALGTAARFYLVTWLGERV 89 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhccccc---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555555555555555566666666665442211 112223344455555556667778888889999999
Q ss_pred HHHHHHHHHHHHHhCCCccccccCCChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001411 585 TARVRLSMFSAILSNEIGWFDLDENNTGLLISTLAADATLVRSALADRLSIIVQNVALTVTAFVIAFILSWRLAAVVAAS 664 (1082)
Q Consensus 585 ~~~l~~~l~~~~l~~~~~ffd~~~~~~G~il~r~s~D~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~ 664 (1082)
...+|..+++++++.|.++|+. .+.|++++|+++|++.+++.+...+..++..++.+++++++++.++|.+++++++.
T Consensus 90 ~~~lr~~l~~~l~~~~~~~~~~--~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~ 167 (576)
T TIGR02204 90 VADIRRAVFAHLISLSPSFFDK--NRSGEVVSRLTTDTTLLQSVIGSSLSMALRNALMCIGGLIMMFITSPKLTSLVLLA 167 (576)
T ss_pred HHHHHHHHHHHHHcCCHHHHcc--CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 9999999999999999999975 67999999999999999999998898989999999999999999999999999988
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHccHHHHHHcCcHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 001411 665 LPLLIGAFVAEQLFLKGFGGDYNRAYSRATSVAREAIANIRTVAAYGIEKRISIQFASELSQPNKQALLRGHISGFGYGV 744 (1082)
Q Consensus 665 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~tIra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 744 (1082)
+|+.++..++..+..++..++..+...+..+++.|.++|+++||+|+.++++.++|.+..++..+...+......+...+
T Consensus 168 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (576)
T TIGR02204 168 VPLVLLPILLFGRRVRKLSRESQDRIADAGSYAGETLGAIRTVQAFGHEDAERSRFGGAVEKAYEAARQRIRTRALLTAI 247 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888777777777777777888888888999999999999999999999999999999998888877777777776666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCCCC
Q 001411 745 SQLLSLCSYALGLWYASVLIKQKGSNFGDIMKSFMVLIITALAVAETLALAPDIVKGSQALGPVFGILYRKTAIQPDDPA 824 (1082)
Q Consensus 745 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~~~~~~~~~~~~~~ 824 (1082)
...+.++..++.+++|.+++..|.++.|.++++..+......++..+...+..+..+..+.+|+.++++.+++.+.....
T Consensus 248 ~~~~~~~~~~~~~~~g~~~v~~g~lt~g~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~~ 327 (576)
T TIGR02204 248 VIVLVFGAIVGVLWVGAHDVIAGKMSAGTLGQFVFYAVMVAGSIGTLSEVWGELQRAAGAAERLIELLQAEPDIKAPAHP 327 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCCCCC
Confidence 66666677778888999999999999999988888888888899999999999999999999999998765432211111
Q ss_pred CcccccccccEEEEeEEEECCCCCCcccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCccCCCC
Q 001411 825 SKEVTEIKGNIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTL 904 (1082)
Q Consensus 825 ~~~~~~~~g~I~~~~Vs~~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i 904 (1082)
.....+..+.|+|+||+|+|+.+++.++|+|+||+|+|||+++|+|+||||||||+++|+|+|+|++|+|.+||+|++++
T Consensus 328 ~~~~~~~~~~i~~~~v~f~y~~~~~~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~~G~I~i~g~~i~~~ 407 (576)
T TIGR02204 328 KTLPVPLRGEIEFEQVNFAYPARPDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDLRQL 407 (576)
T ss_pred ccCCcCCCceEEEEEEEEECCCCCCCccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhc
Confidence 11112234679999999999854336799999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHhcceEEEcccCccccccHHHHhccCCCCCCHHHHHHHHHHhcHHHHHhhCcccccccccCCCCCCChhHHHHHHH
Q 001411 905 NLRSLRRKIGLVQQEPALFSTTIYENIKYGNEDASEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAI 984 (1082)
Q Consensus 905 ~~~~lR~~i~~VpQdp~Lf~gTIreNl~~~~~~~~d~ei~~al~~a~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlaL 984 (1082)
+.+++|++|+|+||||++|+|||||||.++.|+.+|++++++++.+++.++++++|+|+||+++++|.+||||||||++|
T Consensus 408 ~~~~~~~~i~~~~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LSgGq~Qrl~l 487 (576)
T TIGR02204 408 DPAELRARMALVPQDPVLFAASVMENIRYGRPDATDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQRQRIAI 487 (576)
T ss_pred CHHHHHHhceEEccCCccccccHHHHHhcCCCCCCHHHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcCCHHHHHHHHH
Confidence 99999999999999999999999999999888889999999999999999999999999999999999999999999999
Q ss_pred HHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhccCEEEEEeCCEEEEecChHHHhhhccc
Q 001411 985 ARAILKNPSILLLDEATSALDTASENLIQEALDKLMEGRTTIMVAHRLSTIRNADKIAVLQQGKVAEIGSHEQLLRKENG 1064 (1082)
Q Consensus 985 ARAlL~~~~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~~DrI~Vl~~G~ive~G~~~eLl~~~~g 1064 (1082)
|||++++|+|||||||||+||++|++.+.+.|++..+++|+|+||||++.+..||+|++|++|+++|.|+|++|++ +++
T Consensus 488 aRal~~~~~ililDEpts~lD~~~~~~i~~~l~~~~~~~t~IiitH~~~~~~~~d~vi~l~~g~~~~~g~~~~l~~-~~~ 566 (576)
T TIGR02204 488 ARAILKDAPILLLDEATSALDAESEQLVQQALETLMKGRTTLIIAHRLATVLKADRIVVMDQGRIVAQGTHAELIA-KGG 566 (576)
T ss_pred HHHHHhCCCeEEEeCcccccCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEEEEECCEEEeeecHHHHHH-cCC
Confidence 9999999999999999999999999999999999888999999999999999999999999999999999999998 689
Q ss_pred hHHHHHHHh
Q 001411 1065 IYKQLIRLQ 1073 (1082)
Q Consensus 1065 ~f~~l~~~~ 1073 (1082)
.|++|++.|
T Consensus 567 ~~~~l~~~~ 575 (576)
T TIGR02204 567 LYARLARLQ 575 (576)
T ss_pred hHHHHHhhc
Confidence 999999765
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. |
| >TIGR02868 CydC thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-79 Score=740.09 Aligned_cols=517 Identities=23% Similarity=0.279 Sum_probs=436.5
Q ss_pred cchhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCchhhHhHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001411 506 AAEWPYAVLGSVGAILAGMEAPLFALGITHILTAFYSPHDSQIKRVVDQV--ALIFVGLAVVTIPVYLLQHYFYTLMGEH 583 (1082)
Q Consensus 506 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 583 (1082)
+++++.+.+..++.++..+.....++.+..+++....... ....+ ...++++.++..++.++..++....+.+
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (529)
T TIGR02868 9 QPRTRRLVVAILLGALALGSAVALLGVSAWLISRAAEMPP-----VLYLSVAAVAVRAFGIGRAVFRYLERLVGHDAALR 83 (529)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcch-----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444455555555554332110 11111 1112234455667777888888899999
Q ss_pred HHHHHHHHHHHHHHhCCCccccccCCChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001411 584 LTARVRLSMFSAILSNEIGWFDLDENNTGLLISTLAADATLVRSALADRLSIIVQNVALTVTAFVIAFILSWRLAAVVAA 663 (1082)
Q Consensus 584 ~~~~l~~~l~~~~l~~~~~ffd~~~~~~G~il~r~s~D~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~ 663 (1082)
+..++|.++++++++.|.+||+. +++|++++|+++|++.++..+...+..++..++.++++++++++++|.+++++++
T Consensus 84 ~~~~lr~~~~~~ll~~~~~~~~~--~~~g~~~~~l~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~l~ 161 (529)
T TIGR02868 84 SLGRLRVRVYDRLARLALAGRRR--FQTGDLLGRLGADVDALQDLYVRVIVPLVVALVVGSAAVAAIALLSVPAALVLAA 161 (529)
T ss_pred HHHHHHHHHHHHhhccCcccccc--CChhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 99999999999999999999974 7899999999999999999999999999999999999999999999999998888
Q ss_pred HHHHHHHHHHH-HHHHHhhHHHHHHHHHHHHHHHHHHHHccHHHHHHcCcHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 001411 664 SLPLLIGAFVA-EQLFLKGFGGDYNRAYSRATSVAREAIANIRTVAAYGIEKRISIQFASELSQPNKQALLRGHISGFGY 742 (1082)
Q Consensus 664 ~~p~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~tIra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 742 (1082)
.+|++.++... ..+..+...++.++...+..+++.|.++|+++||+|++++.+.++|.+..++..+...+.....++..
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (529)
T TIGR02868 162 GLLLAGFVAPLVSLRAARAAEVALARLRSQLYQQLTDALDGAADLVAYGALDPALAQVEAADRELLAAERRAARATGLGA 241 (529)
T ss_pred HHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhccHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 87777655433 33444555566667778888999999999999999999999999999999999998888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCC
Q 001411 743 GVSQLLSLCSYALGLWYASVLIKQKGSNFGDIMKSFMVLIITALAVAETLALAPDIVKGSQALGPVFGILYRKTAIQPDD 822 (1082)
Q Consensus 743 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~~~~~~~~~~~~ 822 (1082)
.+..++..+..++.+|+|..++..|.++.|.+++++.+......++..+...+..+..+..+.+|+.++++.+++.+..+
T Consensus 242 ~~~~~~~~~~~~~~~~~g~~~~~~g~~t~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~ 321 (529)
T TIGR02868 242 AAQLLAAGLAVLGALWAGGPAVADGTLAPATLAVLVLLPLAAFEAFAPLPAAAQALTRVRAAAERIEEVTGAKGPRPEGV 321 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCCCC
Confidence 88888888888888999999999999999999888888888888888888888999999999999999987655422111
Q ss_pred CC-CcccccccccEEEEeEEEECCCCCCcccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCccC
Q 001411 823 PA-SKEVTEIKGNIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDI 901 (1082)
Q Consensus 823 ~~-~~~~~~~~g~I~~~~Vs~~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di 901 (1082)
.. ....++..+.|+|+||+|+|++ ++++|+|+||+|+|||++|||||||||||||+++|+|+|+|++|+|.+||+|+
T Consensus 322 ~~~~~~~~~~~~~I~~~~vsf~Y~~--~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~i~g~~i 399 (529)
T TIGR02868 322 VPAAGALGLGKPTLELRDLSFGYPG--SPPVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPLQGEVTLDGVSV 399 (529)
T ss_pred CCCCcccCCCCceEEEEEEEEecCC--CCceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEh
Confidence 11 1111233567999999999974 34699999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHhcceEEEcccCccccccHHHHhccCCCCCCHHHHHHHHHHhcHHHHHhhCcccccccccCCCCCCChhHHHH
Q 001411 902 RTLNLRSLRRKIGLVQQEPALFSTTIYENIKYGNEDASEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQR 981 (1082)
Q Consensus 902 ~~i~~~~lR~~i~~VpQdp~Lf~gTIreNl~~~~~~~~d~ei~~al~~a~l~~~i~~lp~gldt~v~e~G~~LSgGQrQr 981 (1082)
+++ .+++|++|+||||||+||+|||||||.+|.|+++|+++++|++.++++++|.++|+||||++||+|.+||||||||
T Consensus 400 ~~~-~~~lr~~i~~V~Q~~~lF~~TI~eNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQrQR 478 (529)
T TIGR02868 400 SSL-QDELRRRISVFAQDAHLFDTTVRDNLRLGRPDATDEELWAALERVGLADWLRSLPDGLDTVLGEGGARLSGGERQR 478 (529)
T ss_pred hhH-HHHHHhheEEEccCcccccccHHHHHhccCCCCCHHHHHHHHHHcCCHHHHHhCcccccchhccccCcCCHHHHHH
Confidence 999 9999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCc
Q 001411 982 VAIARAILKNPSILLLDEATSALDTASENLIQEALDKLMEGRTTIMVAHRL 1032 (1082)
Q Consensus 982 laLARAlL~~~~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHrl 1032 (1082)
||||||++++|+|||||||||+||++||+.|++.+++..+++|+|+||||+
T Consensus 479 iaiARall~~~~iliLDE~TSaLD~~te~~I~~~l~~~~~~~TvIiItHrl 529 (529)
T TIGR02868 479 LALARALLADAPILLLDEPTEHLDAGTESELLEDLLAALSGKTVVVITHHL 529 (529)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEecCC
Confidence 999999999999999999999999999999999999988899999999996
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. |
| >COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-80 Score=746.51 Aligned_cols=436 Identities=38% Similarity=0.567 Sum_probs=409.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchH
Q 001411 5 HALRYLSQFFVGFAVGFTSVWQLTLLTLAVVPLIAVAGGAYTITMSTLSEKGEAAYGEAGKVAEEIISQVRAVYAFVGEA 84 (1082)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~ 84 (1082)
..+-++..+++.++++++++|.|++++++.+|++++...++.+.+++..++..+..++.++.+.|+++|+++||+.+.|.
T Consensus 273 ~~iiD~~~~~i~l~vm~~ys~~L~li~l~~~~l~~l~~~~~~~~l~~~~~~~~~~~a~~~s~lvE~i~gi~tvK~~~~e~ 352 (709)
T COG2274 273 TLIIDLLFALIFLAVMFLYSWKLTLIVLAAIPLNVLITLIFQPLLRRKTRKLIEESAEQQSFLVETIKGIETVKALAAEP 352 (709)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhHHHHHhhhhH
Confidence 34455666677788899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHH
Q 001411 85 KAIESYSHSLKEALKQGKKSGVAKGIGVGLTYGLLFCAWALLLWYAGILVRHGDTNGGKAFTTIINVIFSGFALGQAAPN 164 (1082)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~l~~g~~~~~~~~~~~~~~~l~~~~~~ 164 (1082)
.+..+|++...+..+...+..........+..++..+..++++|+|+++|++|.+|+|.++++.+.......|+..+...
T Consensus 353 ~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~v~iL~~G~~lVl~~~lTlG~LiAf~~l~~~f~~pi~~L~~~ 432 (709)
T COG2274 353 RFRSQWDNRLAKQVNIGFKTEKLALILNTIKSLLQQLSSVLILWFGAILVLEGELTLGQLVAFNMLAGYFISPITRLSQL 432 (709)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999888876666667899999999
Q ss_pred HHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCCCCcEEEEEEEEECCCCCCccccceeEEEeCCCEEEEEcCCCC
Q 001411 165 LAAIAKGKAAAANIISIIKENSHSSERPGDDGITLPKLAGQIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGS 244 (1082)
Q Consensus 165 ~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGs 244 (1082)
+..+++++.+.+|+.++++.++|.+.. ......++..++|+++||+|+|+.++.++|+|+||+|+|||++||||+|||
T Consensus 433 ~~~~q~~~~~~~rL~dil~~~~E~~~~--~~~~~~~~~~g~I~~~nvsf~y~~~~~~vL~~isL~I~~Ge~vaIvG~SGs 510 (709)
T COG2274 433 WTDFQQAKVALERLGDILDTPPEQEGD--KTLIHLPKLQGEIEFENVSFRYGPDDPPVLEDLSLEIPPGEKVAIVGRSGS 510 (709)
T ss_pred HHHHHHHHHHHHHHHHHhcCCcccccc--cccccccccCceEEEEEEEEEeCCCCcchhhceeEEeCCCCEEEEECCCCC
Confidence 999999999999999999887764311 112344566789999999999987655799999999999999999999999
Q ss_pred cHHHHHHHHHhCCCCCCcEEEECCeeCCCCCHHHHhhhceEEccCCCcChhcHHHHHhcCCCCCCHHHHHHHHHHhchHH
Q 001411 245 GKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNILLGKEDASMDRVIEAAKAANAHS 324 (1082)
Q Consensus 245 GKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~ 324 (1082)
|||||+|+|+|+|+|++|+|++||.|++++++.++|++||||+||+.||+|||+|||+++.|+.++|++.+||+.+++|+
T Consensus 511 GKSTL~KLL~gly~p~~G~I~~dg~dl~~i~~~~lR~~ig~V~Q~~~Lf~gSI~eNi~l~~p~~~~e~i~~A~~~ag~~~ 590 (709)
T COG2274 511 GKSTLLKLLLGLYKPQQGRILLDGVDLNDIDLASLRRQVGYVLQDPFLFSGSIRENIALGNPEATDEEIIEAAQLAGAHE 590 (709)
T ss_pred CHHHHHHHHhcCCCCCCceEEECCEeHHhcCHHHHHhheeEEcccchhhcCcHHHHHhcCCCCCCHHHHHHHHHHhCcHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCCccccccCCCCCCChHHHHHHHHHHhcccCCCeeEEeCcccCCCHHHHHHHHHHHHHHcCCCeEEEEccCccc
Q 001411 325 FVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLST 404 (1082)
Q Consensus 325 ~i~~lp~g~~t~~g~~g~~LSgGqkqri~lARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~vtH~~~~ 404 (1082)
||.++|.||+|.+||+|.+||||||||++|||||+++|+||||||||||||+++|+.+.+.|.++.+++|+|+||||+++
T Consensus 591 fI~~lP~gy~t~v~E~G~~LSGGQrQrlalARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~~~~T~I~IaHRl~t 670 (709)
T COG2274 591 FIENLPMGYDTPVGEGGANLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLLQILQGRTVIIIAHRLST 670 (709)
T ss_pred HHHhcccccccccccCCCCCCHHHHHHHHHHHHhccCCCEEEEeCcccccCHhHHHHHHHHHHHHhcCCeEEEEEccchH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCEEEEEeCCEEEEecCchhhhhcCchhHHHHHhh
Q 001411 405 VRDVDTIMVLKNGQVVESGTHVDLISKGGEYAALVNLQ 442 (1082)
Q Consensus 405 ~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~ 442 (1082)
+++||||+||++|+|+++|+|+|+++.+|.|++++..|
T Consensus 671 i~~adrIiVl~~Gkiv~~gs~~ell~~~g~y~~l~~~q 708 (709)
T COG2274 671 IRSADRIIVLDQGKIVEQGSHEELLAQGGLYARLYQQQ 708 (709)
T ss_pred hhhccEEEEccCCceeccCCHHHHHHhcChHHHHHhcc
Confidence 99999999999999999999999999999999998643
|
|
| >PTZ00265 multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-79 Score=794.21 Aligned_cols=570 Identities=29% Similarity=0.472 Sum_probs=501.4
Q ss_pred hhHHHHHHHh-cchhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCchhhHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 001411 496 PSIWELLKLN-AAEWPYAVLGSVGAILAGMEAPLFALGITHILTAFYSPHDSQIKRVVDQVALIFVGLAVVTIPVYLLQH 574 (1082)
Q Consensus 496 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 574 (1082)
.+++.++++. +.++..++++++++++.++..|+++.++..++..+... .....+.+.+++++++.+++.+++.
T Consensus 45 ~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~p~~~~i~g~iid~~~~~------~~~~~~~~~~~~~~i~~~~~~~~~~ 118 (1466)
T PTZ00265 45 IPFFLPFKCLPASHRKLLGVSFVCATISGGTLPFFVSVFGVIMKNMNLG------ENVNDIIFSLVLIGIFQFILSFISS 118 (1466)
T ss_pred ccHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc------chHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666654 34566777888888889999999999999888876422 1123345566677777888899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCccccccCCChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001411 575 YFYTLMGEHLTARVRLSMFSAILSNEIGWFDLDENNTGLLISTLAADATLVRSALADRLSIIVQNVALTVTAFVIAFILS 654 (1082)
Q Consensus 575 ~~~~~~~~~~~~~l~~~l~~~~l~~~~~ffd~~~~~~G~il~r~s~D~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 654 (1082)
++..+.+.+...++|.++|++++++|++|||. ++.|.+++|++.|++.++..+...+..++..++.++++++++++++
T Consensus 119 ~~~~~~~~~~~~~lR~~~~~~ll~~~~~~fd~--~~~~~l~s~l~~d~~~i~~~i~~~~~~~~~~~~~~i~~~i~~~~~s 196 (1466)
T PTZ00265 119 FCMDVVTTKILKTLKLEFLKSVFYQDGQFHDN--NPGSKLTSDLDFYLEQVNAGIGTKFITIFTYASAFLGLYIWSLFKN 196 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHcC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999986 6889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHccHHHHHHcCcHHHHHHHHHHHHhhHHHHHHHH
Q 001411 655 WRLAAVVAASLPLLIGAFVAEQLFLKGFGGDYNRAYSRATSVAREAIANIRTVAAYGIEKRISIQFASELSQPNKQALLR 734 (1082)
Q Consensus 655 ~~l~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~tIra~~~~~~~~~~~~~~~~~~~~~~~~~ 734 (1082)
|.+++++++++|+++++.++..+..+...++.++...+..+.+.|++.|+++||+|+.|+.+.++|.+..+...+...+.
T Consensus 197 w~Lalv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tVka~~~e~~~~~~f~~~~~~~~~~~~k~ 276 (1466)
T PTZ00265 197 ARLTLCITCVFPLIYICGVICNKKVKINKKTSLLYNNNTMSIIEEALVGIRTVVSYCGEKTILKKFNLSEKLYSKYILKA 276 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHhccCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999988888888887777777777788999999999999999999999999999999999999988888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001411 735 GHISGFGYGVSQLLSLCSYALGLWYASVLIKQK--------GSNFGDIMKSFMVLIITALAVAETLALAPDIVKGSQALG 806 (1082)
Q Consensus 735 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 806 (1082)
....++..++..++.++.+++.+|+|.+++..| .++.|.+++.+.........+..+...+..+..+..+.+
T Consensus 277 ~~~~~~~~~~~~~~~~~~~~l~~~~G~~lv~~g~~~~~~~~~~t~g~v~~~~~~~l~~~~~l~~i~~~~~~~~~a~~a~~ 356 (1466)
T PTZ00265 277 NFMESLHIGMINGFILASYAFGFWYGTRIIISDLSNQQPNNDFHGGSVISILLGVLISMFMLTIILPNITEYMKSLEATN 356 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888888999999999999999875 467788777766665555566666777888899999999
Q ss_pred HHHHhhcccccCCCCCCCCcccccccccEEEEeEEEECCCCCCcccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHhcc
Q 001411 807 PVFGILYRKTAIQPDDPASKEVTEIKGNIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRF 886 (1082)
Q Consensus 807 ri~~~~~~~~~~~~~~~~~~~~~~~~g~I~~~~Vs~~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl 886 (1082)
|++++++.+++.++.. ..... +..+.|+|+||+|+|+.+++.++|+|+||+|+|||++||||+||||||||+++|.|+
T Consensus 357 ri~~ii~~~~~~~~~~-~~~~~-~~~~~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl 434 (1466)
T PTZ00265 357 SLYEIINRKPLVENND-DGKKL-KDIKKIQFKNVRFHYDTRKDVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERL 434 (1466)
T ss_pred HHHHHHcCCCCCCCCC-CCccC-CCCCcEEEEEEEEEcCCCCCCceeccceEEEcCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 9999998766543211 11111 122479999999999865556799999999999999999999999999999999999
Q ss_pred ccCCccEEEE-CCccCCCCCHHHHhcceEEEcccCccccccHHHHhccCCC-----------------------------
Q 001411 887 YDPISGTVLI-DGYDIRTLNLRSLRRKIGLVQQEPALFSTTIYENIKYGNE----------------------------- 936 (1082)
Q Consensus 887 ~~p~~G~I~i-dG~di~~i~~~~lR~~i~~VpQdp~Lf~gTIreNl~~~~~----------------------------- 936 (1082)
|+|++|+|++ ||+|+++++.+++|++|+||||+|.||++||+|||.++..
T Consensus 435 ~~p~~G~I~i~~g~~i~~~~~~~lr~~Ig~V~Q~~~LF~~TI~eNI~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 514 (1466)
T PTZ00265 435 YDPTEGDIIINDSHNLKDINLKWWRSKIGVVSQDPLLFSNSIKNNIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRNSC 514 (1466)
T ss_pred ccCCCCeEEEeCCcchhhCCHHHHHHhccEecccccchhccHHHHHHhcCCCccccchhccccccccccccccccccccc
Confidence 9999999999 5799999999999999999999999999999999998631
Q ss_pred ----------------------------CCCHHHHHHHHHHhcHHHHHhhCcccccccccCCCCCCChhHHHHHHHHHHH
Q 001411 937 ----------------------------DASEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAI 988 (1082)
Q Consensus 937 ----------------------------~~~d~ei~~al~~a~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlaLARAl 988 (1082)
+.+|+++++|++.+++++|+.++|+||||.+|++|.+|||||||||+|||||
T Consensus 515 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~a~~~~~l~~~i~~lp~g~dT~vg~~g~~LSGGQkQRiaIARAl 594 (1466)
T PTZ00265 515 RAKCAGDLNDMSNTTDSNELIEMRKNYQTIKDSEVVDVSKKVLIHDFVSALPDKYETLVGSNASKLSGGQKQRISIARAI 594 (1466)
T ss_pred cccccchhhhcccccchhhhhhcccccccCCHHHHHHHHHHhCcHHHHHhCccccCceeCCCCCcCCHHHHHHHHHHHHH
Confidence 3567899999999999999999999999999999999999999999999999
Q ss_pred ccCCCEEEeeCCCCCCCHHHHHHHHHHHHHhc--CCceEEEEecCchhhhccCEEEEEeCC-------------------
Q 001411 989 LKNPSILLLDEATSALDTASENLIQEALDKLM--EGRTTIMVAHRLSTIRNADKIAVLQQG------------------- 1047 (1082)
Q Consensus 989 L~~~~ILlLDEaTS~LD~~te~~I~~~l~~~~--~~~TvI~IaHrl~ti~~~DrI~Vl~~G------------------- 1047 (1082)
+++|+|||||||||+||+++++.|++.|++.. +++|+|+||||+++++.||+|+||++|
T Consensus 595 l~~P~ILlLDEpTSaLD~~se~~i~~~L~~~~~~~g~TvIiIsHrls~i~~aD~Iivl~~g~~g~~~~~~~~~~~~~~~~ 674 (1466)
T PTZ00265 595 IRNPKILILDEATSSLDNKSEYLVQKTINNLKGNENRITIIIAHRLSTIRYANTIFVLSNRERGSTVDVDIIGEDPTKDN 674 (1466)
T ss_pred hcCCCEEEEeCcccccCHHHHHHHHHHHHHHhhcCCCEEEEEeCCHHHHHhCCEEEEEeCCccccccccccccccccccc
Confidence 99999999999999999999999999999985 489999999999999999999999986
Q ss_pred ----------------------------EEEEecChHHHhhhccchHHHHHHHhhc
Q 001411 1048 ----------------------------KVAEIGSHEQLLRKENGIYKQLIRLQQD 1075 (1082)
Q Consensus 1048 ----------------------------~ive~G~~~eLl~~~~g~f~~l~~~~~~ 1075 (1082)
+|+|+|+|+||++.++|.|+.|++.|..
T Consensus 675 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ive~Gth~~L~~~~~g~y~~l~~~q~~ 730 (1466)
T PTZ00265 675 KENNNKNNKDDNNNNNNNNNNKINNAGSYIIEQGTHDALMKNKNGIYYTMINNQKV 730 (1466)
T ss_pred cccccccccccccccccccccccccCCceeEeeCCHHHHHhccCCcHHHHHhhhcc
Confidence 5999999999997669999999988754
|
|
| >TIGR01192 chvA glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-78 Score=733.58 Aligned_cols=566 Identities=28% Similarity=0.380 Sum_probs=478.2
Q ss_pred HHHHHHhcchhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCchhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001411 499 WELLKLNAAEWPYAVLGSVGAILAGMEAPLFALGITHILTAFYSPHDSQIKRVVDQVALIFVGLAVVTIPVYLLQHYFYT 578 (1082)
Q Consensus 499 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 578 (1082)
++++++.+++++.+.+.+++.++..+.....++.+..+++..+.... ...+..+++++.++..+..++..++..
T Consensus 8 ~~l~~~l~~~k~~~~~~~~~~~~~~~~~~~~p~~~~~iid~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (585)
T TIGR01192 8 VRALSYLNVHKNRVLLIVIANITLAAITIAEPILFGRIIDAISSKSD------VLPTLALWAGFGVFNTIAYVLVAREAD 81 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555666666666666666666666677777777766543211 011222222233334444444555555
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCccccccCCChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001411 579 LMGEHLTARVRLSMFSAILSNEIGWFDLDENNTGLLISTLAADATLVRSALADRLSIIVQNVALTVTAFVIAFILSWRLA 658 (1082)
Q Consensus 579 ~~~~~~~~~l~~~l~~~~l~~~~~ffd~~~~~~G~il~r~s~D~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 658 (1082)
....++..++|.++|+++++.|++||+. +++|++++|+++|++.+...+...+..++..++.+++.+++++.++|.++
T Consensus 82 ~~~~~~~~~lr~~~~~~l~~l~~~~~~~--~~~g~~~s~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~ 159 (585)
T TIGR01192 82 RLAHGRRATLLTEAFGRIISMPLSWHQQ--RGTSNALHTLLRATETLFGLWLEFMRQHLATFVALFLLIPTAFAMDWRLS 159 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHhCC--CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666667777789999999999999985 78999999999999999999988888888888888888888899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHccHHHHHHcCcHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 001411 659 AVVAASLPLLIGAFVAEQLFLKGFGGDYNRAYSRATSVAREAIANIRTVAAYGIEKRISIQFASELSQPNKQALLRGHIS 738 (1082)
Q Consensus 659 ~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~tIra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 738 (1082)
+++++++|+.+++.....+..+...++......+..+++.|+++|+++||+||.++.+.+++.+..++..+...+..+..
T Consensus 160 li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (585)
T TIGR01192 160 IVLMVLGILYILIAKLVMQRTKNGQAAVEHHYHNVFKHVSDSISNVSVVHSYNRIEAETSALKQFTNNLLSAQYPVLDWW 239 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999989888777777666666666667777888899999999999999999999999999999998888877777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccC
Q 001411 739 GFGYGVSQLLSLCSYALGLWYASVLIKQKGSNFGDIMKSFMVLIITALAVAETLALAPDIVKGSQALGPVFGILYRKTAI 818 (1082)
Q Consensus 739 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~~~~~~~~ 818 (1082)
++...+...+..+..++.+++|.+++..|.++.|.++++..+......++..+...+..+..+..+.+|+.++++.+++.
T Consensus 240 ~~~~~~~~~~~~~~~~~v~~~g~~~v~~g~it~g~l~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~ri~~~~~~~~~~ 319 (585)
T TIGR01192 240 ALASGLNRMASTISMMCILVIGTVLVIKGELSVGEVIAFIGFANLLIGRLDQMSGFITQIFEARAKLEDFFDLEDSVFQR 319 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccc
Confidence 77777777777777888899999999999999999998888888888888888888999999999999999988754432
Q ss_pred CCCCCCCcccccccccEEEEeEEEECCCCCCcccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECC
Q 001411 819 QPDDPASKEVTEIKGNIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDG 898 (1082)
Q Consensus 819 ~~~~~~~~~~~~~~g~I~~~~Vs~~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG 898 (1082)
+... .....++..+.|+|+||+|+|++ +.++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||
T Consensus 320 ~~~~-~~~~~~~~~~~i~~~~v~~~y~~--~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g 396 (585)
T TIGR01192 320 EEPA-DAPELPNVKGAVEFRHITFEFAN--SSQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDG 396 (585)
T ss_pred cCCc-cCCCCCCCCCeEEEEEEEEECCC--CCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCCCCCCEEEECC
Confidence 2111 10111223467999999999973 24689999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCHHHHhcceEEEcccCccccccHHHHhccCCCCCCHHHHHHHHHHhcHHHHHhhCcccccccccCCCCCCChhH
Q 001411 899 YDIRTLNLRSLRRKIGLVQQEPALFSTTIYENIKYGNEDASEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQ 978 (1082)
Q Consensus 899 ~di~~i~~~~lR~~i~~VpQdp~Lf~gTIreNl~~~~~~~~d~ei~~al~~a~l~~~i~~lp~gldt~v~e~G~~LSgGQ 978 (1082)
+|+++++.+.+|++++||||||.+|++|++|||.++.+++++++++++++.+++++++.++|+|+||.+|++|.+|||||
T Consensus 397 ~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSgGq 476 (585)
T TIGR01192 397 IDINTVTRESLRKSIATVFQDAGLFNRSIRENIRLGREGATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGE 476 (585)
T ss_pred EEhhhCCHHHHHhheEEEccCCccCcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccchhcCCCCCCCHHH
Confidence 99999999999999999999999999999999999888889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhccCEEEEEeCCEEEEecChHHH
Q 001411 979 KQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLMEGRTTIMVAHRLSTIRNADKIAVLQQGKVAEIGSHEQL 1058 (1082)
Q Consensus 979 rQrlaLARAlL~~~~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~~DrI~Vl~~G~ive~G~~~eL 1058 (1082)
|||++|||||+++|+|||||||||+||+++++.+++.|++..+++|+|+||||++++..||+|++|++|+++|.|+|++|
T Consensus 477 ~qrl~lARall~~p~ililDEpts~LD~~~~~~i~~~l~~~~~~~tvI~isH~~~~~~~~d~i~~l~~G~i~~~g~~~~l 556 (585)
T TIGR01192 477 RQRLAIARAILKNAPILVLDEATSALDVETEARVKNAIDALRKNRTTFIIAHRLSTVRNADLVLFLDQGRLIEKGSFQEL 556 (585)
T ss_pred HHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEEcChHHHHcCCEEEEEECCEEEEECCHHHH
Confidence 99999999999999999999999999999999999999988889999999999999999999999999999999999999
Q ss_pred hhhccchHHHHHHHhhcc
Q 001411 1059 LRKENGIYKQLIRLQQDK 1076 (1082)
Q Consensus 1059 l~~~~g~f~~l~~~~~~~ 1076 (1082)
++ ++|.|+++++.+...
T Consensus 557 ~~-~~~~y~~l~~~~~~~ 573 (585)
T TIGR01192 557 IQ-KDGRFYKLLRRSGLL 573 (585)
T ss_pred HH-CCChHHHHHHhCccc
Confidence 98 689999999877543
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related. |
| >PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-78 Score=735.53 Aligned_cols=516 Identities=28% Similarity=0.418 Sum_probs=458.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccccccCCChhHHHHHHHhhHHHHHHHHHHHH
Q 001411 554 QVALIFVGLAVVTIPVYLLQHYFYTLMGEHLTARVRLSMFSAILSNEIGWFDLDENNTGLLISTLAADATLVRSALADRL 633 (1082)
Q Consensus 554 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~l~~~~~ffd~~~~~~G~il~r~s~D~~~i~~~~~~~l 633 (1082)
.|.++++++.++..++.++..++....+.+...++|.++++++++.|++||+. +++|++++|+++|++.++..+...+
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~--~~~g~i~srl~~Dv~~i~~~~~~~~ 114 (569)
T PRK10789 37 MWIGTMVLIAVVVYLLRYVWRVLLFGASYQLAVELREDFYRQLSRQHPEFYLR--HRTGDLMARATNDVDRVVFAAGEGV 114 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHcC--CCHHHHHHHHHHhHHHHHHHHHHHH
Confidence 34455555556666777788888888999999999999999999999999974 7899999999999999998877777
Q ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHccHHHHHHcCc
Q 001411 634 SIIVQNVALTVTAFVIA-FILSWRLAAVVAASLPLLIGAFVAEQLFLKGFGGDYNRAYSRATSVAREAIANIRTVAAYGI 712 (1082)
Q Consensus 634 ~~~~~~~~~~~~~~~~~-~~~~~~l~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~tIra~~~ 712 (1082)
..++..++..+++++++ +.++|.+++++++++|+.+++.....+..++..++.++...+..+.+.|+++|+++||+|++
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~ 194 (569)
T PRK10789 115 LTLVDSLVMGCAVLIVMSTQISWQLTLLALLPMPVMAIMIKRYGDQLHERFKLAQAAFSSLNDRTQESLTSIRMIKAFGL 194 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhcc
Confidence 77777766666665555 57999999999999999888777777777777777777788889999999999999999999
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 001411 713 EKRISIQFASELSQPNKQALLRGHISGFGYGVSQLLSLCSYALGLWYASVLIKQKGSNFGDIMKSFMVLIITALAVAETL 792 (1082)
Q Consensus 713 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 792 (1082)
++.+.++|.+..++..+...+.....++...+.+....+...+.+++|.+++..|.++.|.++++..+......++....
T Consensus 195 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~lv~~g~lt~g~l~a~~~~~~~~~~pl~~l~ 274 (569)
T PRK10789 195 EDRQSALFAADAEDTGKKNMRVARIDARFDPTIYIAIGMANLLAIGGGSWMVVNGSLTLGQLTSFVMYLGLMIWPMLALA 274 (569)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999888888888777777777777777777788899999999999999999998888888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccccCCCCCCCCcccccccccEEEEeEEEECCCCCCcccccceeEEeeCCcEEEEEcCC
Q 001411 793 ALAPDIVKGSQALGPVFGILYRKTAIQPDDPASKEVTEIKGNIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQS 872 (1082)
Q Consensus 793 ~~~~~~~~~~~a~~ri~~~~~~~~~~~~~~~~~~~~~~~~g~I~~~~Vs~~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~s 872 (1082)
..+..+..+..+.+|+.++++.+++.+... ...++..+.|+|+||+|+|+.. +.++|+|+||+|+|||++||+|+|
T Consensus 275 ~~~~~~~~~~~a~~ri~~ll~~~~~~~~~~---~~~~~~~~~I~~~~v~~~y~~~-~~~~l~~i~~~i~~G~~~~ivG~s 350 (569)
T PRK10789 275 WMFNIVERGSAAYSRIRAMLAEAPVVKDGS---EPVPEGRGELDVNIRQFTYPQT-DHPALENVNFTLKPGQMLGICGPT 350 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCcccCCC---CCCCCCCCcEEEEEEEEECCCC-CCccccCeeEEECCCCEEEEECCC
Confidence 999999999999999999987654322111 1112335679999999999742 357999999999999999999999
Q ss_pred CCCHHHHHHHHhccccCCccEEEECCccCCCCCHHHHhcceEEEcccCccccccHHHHhccCCCCCCHHHHHHHHHHhcH
Q 001411 873 GSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRKIGLVQQEPALFSTTIYENIKYGNEDASEIELMKATKAANA 952 (1082)
Q Consensus 873 GSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR~~i~~VpQdp~Lf~gTIreNl~~~~~~~~d~ei~~al~~a~l 952 (1082)
|||||||+++|+|+|+|++|+|.+||+|+++++.+++|++++||||+|++|++||||||.++.++.++++++++++.+++
T Consensus 351 GsGKSTLl~ll~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~~l 430 (569)
T PRK10789 351 GSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSRLAVVSQTPFLFSDTVANNIALGRPDATQQEIEHVARLASV 430 (569)
T ss_pred CCCHHHHHHHHhcccCCCCCEEEECCEEHhhCCHHHHHhheEEEccCCeeccccHHHHHhcCCCCCCHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999999999999999999999999999998888999999999999999
Q ss_pred HHHHhhCcccccccccCCCCCCChhHHHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCc
Q 001411 953 HGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLMEGRTTIMVAHRL 1032 (1082)
Q Consensus 953 ~~~i~~lp~gldt~v~e~G~~LSgGQrQrlaLARAlL~~~~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHrl 1032 (1082)
++++.++|+|+||.+|++|.+||||||||++||||++++|+|||||||||+||+++++.+++.|++..+++|+|+||||+
T Consensus 431 ~~~i~~lp~gl~t~~~~~g~~LSgGq~qRi~lARall~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tii~itH~~ 510 (569)
T PRK10789 431 HDDILRLPQGYDTEVGERGVMLSGGQKQRISIARALLLNAEILILDDALSAVDGRTEHQILHNLRQWGEGRTVIISAHRL 510 (569)
T ss_pred HHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEecch
Confidence 99999999999999999999999999999999999999999999999999999999999999999987899999999999
Q ss_pred hhhhccCEEEEEeCCEEEEecChHHHhhhccchHHHHHHHhhcc
Q 001411 1033 STIRNADKIAVLQQGKVAEIGSHEQLLRKENGIYKQLIRLQQDK 1076 (1082)
Q Consensus 1033 ~ti~~~DrI~Vl~~G~ive~G~~~eLl~~~~g~f~~l~~~~~~~ 1076 (1082)
+++..||+|++|++|+++|.|+|++|++ +++.|+++++.|...
T Consensus 511 ~~~~~~d~i~~l~~G~i~~~g~~~~l~~-~~~~y~~l~~~~~~~ 553 (569)
T PRK10789 511 SALTEASEILVMQHGHIAQRGNHDQLAQ-QSGWYRDMYRYQQLE 553 (569)
T ss_pred hHHHcCCEEEEEeCCEEEEecCHHHHHH-cCChHHHHHHHhhhc
Confidence 9999999999999999999999999997 579999999877543
|
|
| >COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-79 Score=658.80 Aligned_cols=491 Identities=33% Similarity=0.468 Sum_probs=424.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCccccccCCChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH
Q 001411 575 YFYTLMGEHLTARVRLSMFSAILSNEIGWFDLDENNTGLLISTLAADATLVRSALADRLSIIVQNVALTVTAFV-IAFIL 653 (1082)
Q Consensus 575 ~~~~~~~~~~~~~l~~~l~~~~l~~~~~ffd~~~~~~G~il~r~s~D~~~i~~~~~~~l~~~~~~~~~~~~~~~-~~~~~ 653 (1082)
.++...+..+.+.+-.+.|.|+.++.+.|.-. ..+|.+.........-++..+...+...+..++-+....+ ....+
T Consensus 4 ~~fs~v~q~a~r~la~~~F~h~~~Lsl~fHl~--r~TGglsR~ierGtkgI~~i~~~~l~~i~P~~~Ei~l~~vi~~~~~ 81 (497)
T COG5265 4 RLFSPVGQIAVRVLAYVTFFHLHSLSLRFHLE--RRTGGLSRAIERGTKGIETILRWILFNILPTLVEISLVAVILWRVY 81 (497)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHhcchhhhhh--cccCceeeHhhcCcccHHHHHHHHHHHhhHHHHHHHHHHHHHHhhc
Confidence 34566677788888899999999999999864 4555544444444444444555555555555554444333 34467
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHccHHHHHHcCcHHHHHHHHHHHHhhHHHHHHH
Q 001411 654 SWRLAAVVAASLPLLIGAFVAEQLFLKGFGGDYNRAYSRATSVAREAIANIRTVAAYGIEKRISIQFASELSQPNKQALL 733 (1082)
Q Consensus 654 ~~~l~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~tIra~~~~~~~~~~~~~~~~~~~~~~~~ 733 (1082)
+|+.+.+.++++.+.+++.....-..-.+.++.+.+.+++++...+++-+.+|+|.||-|+++..+|...++.+.++..+
T Consensus 82 ~~~f~~~t~vtv~lY~~ftv~~s~wr~~~rr~~n~aDs~a~~~aidsLlnfEtvk~F~ne~~e~~r~~~~~~~Y~~a~~k 161 (497)
T COG5265 82 GWWFALTTLVTVILYLLFTVIVSDWRTDFRRLMNNADSDANAKAIDSLLNFETVKYFGNEEYEAVRYDHALETYEKAAIK 161 (497)
T ss_pred ccHHHHHHHHHHHHHHHhheeehhhhHHHHHhhhhhhhHHHHHHHHHHhhhhheeecCchhhhhhhcCchHHHHHHHHHH
Confidence 89998888888888877766655555556778888899999999999999999999999999999999999999998888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 001411 734 RGHISGFGYGVSQLLSLCSYALGLWYASVLIKQKGSNFGDIMKSFMVLIITALAVAETLALAPDIVKGSQALGPVFGILY 813 (1082)
Q Consensus 734 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~~~ 813 (1082)
....-.++......+...........+...+..|.++.|+++..-.++.....++......+.++.++....++.+++++
T Consensus 162 ~~~Sl~~Ln~gQ~~I~~~~l~~~m~~s~~~v~~g~~TvgD~V~~Nall~qls~Plnflg~~Yrei~q~ltdme~mfdLl~ 241 (497)
T COG5265 162 VHVSLLVLNFGQTAIFSTGLRVMMTMSALGVEEGQLTVGDLVNVNALLFQLSIPLNFLGFSYREIRQALTDMEKMFDLLD 241 (497)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHhhcHHHHhhccCCchhHHhHHHHHhhhhhhhhhhHHHHHHHHHhhhhHHHHHHhhc
Confidence 77777777777777777777777788888888999999999888777777777887778888889999999999999887
Q ss_pred ccccCCCCCCCCcccc-cccccEEEEeEEEECCCCCCcccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCcc
Q 001411 814 RKTAIQPDDPASKEVT-EIKGNIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISG 892 (1082)
Q Consensus 814 ~~~~~~~~~~~~~~~~-~~~g~I~~~~Vs~~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G 892 (1082)
.+.+... .+..++.+ -..|.|.|+||+|.|. |..|+|+|+||++++|+++||||+||+||||+.++|+|||++++|
T Consensus 242 ~~~~v~d-~pda~~L~~~~~g~v~F~~V~F~y~--~~r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD~~sG 318 (497)
T COG5265 242 VEAEVSD-APDAPPLWPVRLGAVAFINVSFAYD--PRRPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSG 318 (497)
T ss_pred cchhhcc-CCCCccccccccceEEEEEEEeecc--ccchhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhCCcCc
Confidence 6554332 22333444 3468899999999996 567999999999999999999999999999999999999999999
Q ss_pred EEEECCccCCCCCHHHHhcceEEEcccCccccccHHHHhccCCCCCCHHHHHHHHHHhcHHHHHhhCcccccccccCCCC
Q 001411 893 TVLIDGYDIRTLNLRSLRRKIGLVQQEPALFSTTIYENIKYGNEDASEIELMKATKAANAHGFISRMPEGYQSHVGDRGV 972 (1082)
Q Consensus 893 ~I~idG~di~~i~~~~lR~~i~~VpQdp~Lf~gTIreNl~~~~~~~~d~ei~~al~~a~l~~~i~~lp~gldt~v~e~G~ 972 (1082)
.|.|||+||+++..+.+|+.||+||||.+||++|+..|+.+|.|+++++|++.|++.+++++||+++|+||||.|||+|-
T Consensus 319 ~I~id~qdir~vtq~slR~aIg~VPQDtvLFNDti~yni~ygr~~at~eev~aaa~~aqi~~fi~~lP~gy~t~Vgergl 398 (497)
T COG5265 319 SITIDGQDIRDVTQQSLRRAIGIVPQDTVLFNDTIAYNIKYGRPDATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGL 398 (497)
T ss_pred eEEEcchhHHHhHHHHHHHHhCcCcccceehhhhHHHHHhccCccccHHHHHHHHHHhhhhHHHHhCchhhhcccchhee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChhHHHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhccCEEEEEeCCEEEEe
Q 001411 973 QLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLMEGRTTIMVAHRLSTIRNADKIAVLQQGKVAEI 1052 (1082)
Q Consensus 973 ~LSgGQrQrlaLARAlL~~~~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~~DrI~Vl~~G~ive~ 1052 (1082)
.||||||||+||||++|++|+||+||||||+||..||+.||.+|++..+++|.++|||||+||.+||.|+||++|+|+|.
T Consensus 399 klSggekqrvaiar~ilk~p~il~~deatsaldt~te~~iq~~l~~~~~~rttlviahrlsti~~adeiivl~~g~i~er 478 (497)
T COG5265 399 KLSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQAALREVSAGRTTLVIAHRLSTIIDADEIIVLDNGRIVER 478 (497)
T ss_pred eccCchHHHHHHHHHHhcCCCEEEEehhhhHhhhhHHHHHHHHHHHHhCCCeEEEEeehhhhccCCceEEEeeCCEEEec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cChHHHhhhccchHHHHHH
Q 001411 1053 GSHEQLLRKENGIYKQLIR 1071 (1082)
Q Consensus 1053 G~~~eLl~~~~g~f~~l~~ 1071 (1082)
|+|+||++ .+|.|++||.
T Consensus 479 g~h~~ll~-~~g~ya~mw~ 496 (497)
T COG5265 479 GTHEELLA-AGGLYAEMWR 496 (497)
T ss_pred CcHHHHHH-cCChHHHHhc
Confidence 99999998 5999999995
|
|
| >TIGR02857 CydD thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-76 Score=713.65 Aligned_cols=525 Identities=23% Similarity=0.330 Sum_probs=449.0
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCchhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001411 512 AVLGSVGAILAGMEAPLFALGITHILTAFYSPHDSQIKRVVDQVALIFVGLAVVTIPVYLLQHYFYTLMGEHLTARVRLS 591 (1082)
Q Consensus 512 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 591 (1082)
+.++++++++.++..+..++.+..+++....... . ......+.+++++++++..++.+++.++..+.+.+...++|.+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~iid~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~ 82 (529)
T TIGR02857 5 LALLGLLGALGALLIIAQAWLLARVIDGLISAGE-P-LAELLPALGALALAVLLRALLGWLGERAAARAAAAVKSQLRER 82 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCC-C-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555556666666666665432211 1 1223345556666777788888999999999999999999999
Q ss_pred HHHHHHhCCCccccccCCChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001411 592 MFSAILSNEIGWFDLDENNTGLLISTLAADATLVRSALADRLSIIVQNVALTVTAFVIAFILSWRLAAVVAASLPLLIGA 671 (1082)
Q Consensus 592 l~~~~l~~~~~ffd~~~~~~G~il~r~s~D~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~p~~~~~ 671 (1082)
+++++++.|..||+. .++|++++|+++|++.+++.+...+..++..++.+++.+++++.++|.+++++++++|+..++
T Consensus 83 l~~~l~~~~~~~~~~--~~~g~~~~~l~~di~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~l~~~~l~~~~ 160 (529)
T TIGR02857 83 LLAAVAALGPGWLQG--RPSGELATLALEGVEALDGYFARYLPQLVLAVIIPLAILAAVFPADWISGLILLLTAPLIPIF 160 (529)
T ss_pred HHHHHHhCCchhhcc--CChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 999999999999974 899999999999999999999988899998888888888999999999999999888888777
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHccHHHHHHcCcHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001411 672 FVAEQLFLKGFGGDYNRAYSRATSVAREAIANIRTVAAYGIEKRISIQFASELSQPNKQALLRGHISGFGYGVSQLLSLC 751 (1082)
Q Consensus 672 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~tIra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 751 (1082)
.+...+..+...++.++...+..+.+.|+++|+++||+|+.++++.++|.+..++..+...+..+...+...+..++..+
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (529)
T TIGR02857 161 MILIGWAAQAAARKQWAALSRLSGHFLDRLRGLPTLKLFGRAKAQAAAIARSSEEYRERTMRVLRIAFLSSAVLELFATL 240 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 76666776666777777788888999999999999999999999999999999888888777777776666666666665
Q ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCCCCCcccccc
Q 001411 752 SYALGLWYASVLIKQKGSNFGDIMKSFMVLIITALAVAETLALAPDIVKGSQALGPVFGILYRKTAIQPDDPASKEVTEI 831 (1082)
Q Consensus 752 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~~~~~~~~~~~~~~~~~~~~~ 831 (1082)
...+...+++..+..|.+++|.++++..+......++..+...+..+..+..+.+|+.++++.+++.... .....+.
T Consensus 241 ~~~~~~~~~~~~~~~g~~t~g~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~ll~~~~~~~~~---~~~~~~~ 317 (529)
T TIGR02857 241 SVALVAVYIGFRLLAGDLDLATGLFVLLLAPEFYLPLRQLGADYHARADGVAAAEALFAVLDAPRPLAGK---APVTAAP 317 (529)
T ss_pred HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCC---cCCCCCC
Confidence 5555555555566689999999988877777778888888889999999999999999998743221111 1111122
Q ss_pred cccEEEEeEEEECCCCCCcccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCccCCCCCHHHHhc
Q 001411 832 KGNIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRR 911 (1082)
Q Consensus 832 ~g~I~~~~Vs~~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR~ 911 (1082)
.+.|+|+||+|+|+++ ++++|+|+||+|+|||++||||+||||||||+++|+|+|+|++|+|.+||+|+++++.+++|+
T Consensus 318 ~~~i~~~~v~f~y~~~-~~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~~~g~~i~~~~~~~lr~ 396 (529)
T TIGR02857 318 APSLEFSGLSVAYPGR-RAPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSWRD 396 (529)
T ss_pred CCeEEEEEEEEECCCC-CcccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEehhhCCHHHHHh
Confidence 4679999999999843 347999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEcccCccccccHHHHhccCCCCCCHHHHHHHHHHhcHHHHHhhCcccccccccCCCCCCChhHHHHHHHHHHHccC
Q 001411 912 KIGLVQQEPALFSTTIYENIKYGNEDASEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKN 991 (1082)
Q Consensus 912 ~i~~VpQdp~Lf~gTIreNl~~~~~~~~d~ei~~al~~a~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlaLARAlL~~ 991 (1082)
+++||||||++|++||||||.++.++.+|++++++++.++++++++++|+||||.+||+|.+||||||||++||||++++
T Consensus 397 ~i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qri~laRal~~~ 476 (529)
T TIGR02857 397 QIAWVPQHPFLFAGTIAENIRLARPDASDAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLALARAFLRD 476 (529)
T ss_pred heEEEcCCCcccCcCHHHHHhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhccccccCCHHHHHHHHHHHHHhcC
Confidence 99999999999999999999998888899999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEeeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhccCEEEEE
Q 001411 992 PSILLLDEATSALDTASENLIQEALDKLMEGRTTIMVAHRLSTIRNADKIAVL 1044 (1082)
Q Consensus 992 ~~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~~DrI~Vl 1044 (1082)
|+|||||||||+||++|++.|++.+++..+++|+|+||||++++..||+|+||
T Consensus 477 ~~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~~l 529 (529)
T TIGR02857 477 APLLLLDEPTAHLDAETEALVTEALRALAQGRTVLLVTHRLALAERADRIVVL 529 (529)
T ss_pred CCEEEEeCcccccCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHhCCEEEeC
Confidence 99999999999999999999999999988899999999999999999999986
|
Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD |
| >COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-78 Score=687.86 Aligned_cols=479 Identities=29% Similarity=0.472 Sum_probs=370.0
Q ss_pred cEEEEEEEEECCCCCC--ccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHHhCCCCC----CcEEEECCeeCCCCCHHH
Q 001411 205 QIEFSEVCFAYPSRPH--MVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPT----SGKILLDGHDLKSLQLKW 278 (1082)
Q Consensus 205 ~i~~~~v~~~y~~~~~--~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~----~G~i~~~g~~~~~~~~~~ 278 (1082)
-++++|++..|..... .+++||||++.+||++||||+|||||||+++.|+|+.++. +|+|.++|.|+..++.+.
T Consensus 5 lL~V~nL~v~~~~~~~~~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~~ 84 (539)
T COG1123 5 LLEVENLTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSERE 84 (539)
T ss_pred eEEEeceEEEEecCCcceeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHHH
Confidence 5899999999965433 3999999999999999999999999999999999999988 899999999998887765
Q ss_pred Hh----hhceEEccCCC-cChh--cHHHHHh----cCCCCC---CHHHHHHHHHHhchHHHHhcCCCCccccccCCCCCC
Q 001411 279 LR----EQMGLVSQEPA-LFAT--SIANNIL----LGKEDA---SMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQL 344 (1082)
Q Consensus 279 ~~----~~i~~v~Q~~~-l~~~--ti~~ni~----~g~~~~---~~~~~~~~~~~~~~~~~i~~lp~g~~t~~g~~g~~L 344 (1082)
+| +.|+|++|+|. .+|. ||.+-|. ...... ..++..+.++.+++ |+-... ......|
T Consensus 85 ~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl-------~~~~~~--~~yPheL 155 (539)
T COG1123 85 MRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSRAEARKRAVELLEQVGL-------PDPERR--DRYPHQL 155 (539)
T ss_pred HHHhccccEEEEecCchhhcCchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHcCC-------CChhhh--ccCCccc
Confidence 53 47999999985 4554 6655554 222111 12233344444433 332222 4456799
Q ss_pred ChHHHHHHHHHHhcccCCCeeEEeCcccCCCHHHHHHHHHHHHHHc--CCCeEEEEccCcccccc-CCEEEEEeCCEEEE
Q 001411 345 SGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIM--SNRTTIVVAHRLSTVRD-VDTIMVLKNGQVVE 421 (1082)
Q Consensus 345 SgGqkqri~lARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~--~~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~ 421 (1082)
|||||||+.||+||..+|++||+||||++||+.++++|++.|+++. .+.++|+|||++..+.+ ||||+||++|+++|
T Consensus 156 SGG~rQRv~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g~a~l~ITHDl~Vva~~aDrv~Vm~~G~iVE 235 (539)
T COG1123 156 SGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLGVVAELADRVVVMYKGEIVE 235 (539)
T ss_pred CchHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHHcCcEEEEEcCCHHHHHHhcCeEEEEECCEEEE
Confidence 9999999999999999999999999999999999999999999986 47899999999999876 89999999999999
Q ss_pred ecCchhhhhcCc-hhHH-HHHhhhccccCCCCcccCCCCCCCCCCCCCCCCcccchhhhhhhhhhhccCCCCCCCchhHH
Q 001411 422 SGTHVDLISKGG-EYAA-LVNLQSSEHLSNPSSICYSGSSRYSSFRDFPSSRRYDVEFESSKRRELQSSDQSFAPSPSIW 499 (1082)
Q Consensus 422 ~g~~~~l~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 499 (1082)
.|+.++++++.. .|.+ ++..
T Consensus 236 ~G~~~~i~~~p~hpYT~~Ll~a---------------------------------------------------------- 257 (539)
T COG1123 236 TGPTEEILSNPQHPYTRGLLAA---------------------------------------------------------- 257 (539)
T ss_pred ecCHHHHHhccCCcccHHHHhh----------------------------------------------------------
Confidence 999999876421 0100 0000
Q ss_pred HHHHHhcchhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCchhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001411 500 ELLKLNAAEWPYAVLGSVGAILAGMEAPLFALGITHILTAFYSPHDSQIKRVVDQVALIFVGLAVVTIPVYLLQHYFYTL 579 (1082)
Q Consensus 500 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 579 (1082)
T Consensus 258 -------------------------------------------------------------------------------- 257 (539)
T COG1123 258 -------------------------------------------------------------------------------- 257 (539)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCccccccCCChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001411 580 MGEHLTARVRLSMFSAILSNEIGWFDLDENNTGLLISTLAADATLVRSALADRLSIIVQNVALTVTAFVIAFILSWRLAA 659 (1082)
Q Consensus 580 ~~~~~~~~l~~~l~~~~l~~~~~ffd~~~~~~G~il~r~s~D~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~ 659 (1082)
.|- .+..+ ..
T Consensus 258 -------------------~p~--~~~~~-~~------------------------------------------------ 267 (539)
T COG1123 258 -------------------VPR--LGDEK-II------------------------------------------------ 267 (539)
T ss_pred -------------------CCC--ccccc-cc------------------------------------------------
Confidence 000 00000 00
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHccHHHHHHcCcHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 001411 660 VVAASLPLLIGAFVAEQLFLKGFGGDYNRAYSRATSVAREAIANIRTVAAYGIEKRISIQFASELSQPNKQALLRGHISG 739 (1082)
Q Consensus 660 ~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~tIra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 739 (1082)
T Consensus 268 -------------------------------------------------------------------------------- 267 (539)
T COG1123 268 -------------------------------------------------------------------------------- 267 (539)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCC
Q 001411 740 FGYGVSQLLSLCSYALGLWYASVLIKQKGSNFGDIMKSFMVLIITALAVAETLALAPDIVKGSQALGPVFGILYRKTAIQ 819 (1082)
Q Consensus 740 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~~~~~~~~~ 819 (1082)
......
T Consensus 268 -------------------------------------------------------------------------~~~~~~- 273 (539)
T COG1123 268 -------------------------------------------------------------------------RLPRRG- 273 (539)
T ss_pred -------------------------------------------------------------------------cccccc-
Confidence 000000
Q ss_pred CCCCCCcccccccccEEEEeEEEECCCCC--------CcccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCc
Q 001411 820 PDDPASKEVTEIKGNIELRNVSFKYPVRP--------DITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPIS 891 (1082)
Q Consensus 820 ~~~~~~~~~~~~~g~I~~~~Vs~~Y~~~~--------~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~ 891 (1082)
+ .+...-++++|++.+|..+. ...+++||||+|++||++||||+||||||||.++|+|+++|++
T Consensus 274 ~--------~~~~~ll~V~~l~k~y~~~~~~~~~~~~~~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~P~~ 345 (539)
T COG1123 274 P--------LRAEPLLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSS 345 (539)
T ss_pred c--------cccCceeEeeeeeeeeccccccccccccceeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCCCCC
Confidence 0 00122488999999998421 2368999999999999999999999999999999999999999
Q ss_pred cEEEECCcc--CCCCCHHHHhcceEEEcccCcc--c-cccHHHHhccCCC---CCC----HHHHHHHHHHhcHHHHHhhC
Q 001411 892 GTVLIDGYD--IRTLNLRSLRRKIGLVQQEPAL--F-STTIYENIKYGNE---DAS----EIELMKATKAANAHGFISRM 959 (1082)
Q Consensus 892 G~I~idG~d--i~~i~~~~lR~~i~~VpQdp~L--f-~gTIreNl~~~~~---~~~----d~ei~~al~~a~l~~~i~~l 959 (1082)
|+|.++|.| .+.-....+|+++-+|+|||+- - ..||+++|.-... ... .+.+.+.++.+++..-
T Consensus 346 G~i~~~g~~~~~~~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~~~~~~~~~~~~~rv~~ll~~VgL~~~---- 421 (539)
T COG1123 346 GSIIFDGQDLDLTGGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGGGSGAERRARVAELLELVGLPPE---- 421 (539)
T ss_pred ceEEEeCcccccccchhhhhhhheEEEEeCcccccCccccHHHHHHhHHhhhcccchHHHHHHHHHHHHHcCCCHH----
Confidence 999999977 3333355688899999999973 2 3699999863211 111 1224444556655431
Q ss_pred cccccccccCCCCCCChhHHHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHhcC--CceEEEEecCchhhhc
Q 001411 960 PEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLME--GRTTIMVAHRLSTIRN 1037 (1082)
Q Consensus 960 p~gldt~v~e~G~~LSgGQrQrlaLARAlL~~~~ILlLDEaTS~LD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~~ 1037 (1082)
........||||||||+||||||..+|++||+|||||+||+.+.+.|.+.|++..+ |.|.|+|||+++.++.
T Consensus 422 ------~l~ryP~elSGGQrQRvaIARALa~~P~lli~DEp~SaLDvsvqa~VlnLl~~lq~e~g~t~lfISHDl~vV~~ 495 (539)
T COG1123 422 ------FLDRYPHELSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELGLTYLFISHDLAVVRY 495 (539)
T ss_pred ------HHhcCchhcCcchhHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHh
Confidence 12334467999999999999999999999999999999999999999999998764 7899999999999987
Q ss_pred -cCEEEEEeCCEEEEecChHHHhhhccchHHHHHHH
Q 001411 1038 -ADKIAVLQQGKVAEIGSHEQLLRKENGIYKQLIRL 1072 (1082)
Q Consensus 1038 -~DrI~Vl~~G~ive~G~~~eLl~~~~g~f~~l~~~ 1072 (1082)
||||+||++|+|||.|+.+++.+.+...|.+.+-.
T Consensus 496 i~drv~vm~~G~iVE~G~~~~v~~~p~h~Ytr~L~~ 531 (539)
T COG1123 496 IADRVAVMYDGRIVEEGPTEKVFENPQHPYTRKLLA 531 (539)
T ss_pred hCceEEEEECCeEEEeCCHHHHhcCCCChHHHHHHH
Confidence 99999999999999999999999888888887654
|
|
| >TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-74 Score=698.69 Aligned_cols=532 Identities=23% Similarity=0.345 Sum_probs=449.2
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCchhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001411 513 VLGSVGAILAGMEAPLFALGITHILTAFYSPHDSQIKRVVDQVALIFVGLAVVTIPVYLLQHYFYTLMGEHLTARVRLSM 592 (1082)
Q Consensus 513 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l 592 (1082)
...+++.++..+.....++.+..+++....... ......+..+++++.++..++.+++.++..+.+.++..++|.++
T Consensus 9 ~~~~~~~~~~~~~~l~~p~~~~~iid~~~~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~ 85 (544)
T TIGR01842 9 IIVGLFSFVINILMLAPPLYMLQVYDRVLTSGS---VPTLLMLTVLALGLYLFLGLLDALRSFVLVRIGEKLDGALNQPI 85 (544)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCc---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444445555556554432211 11223345555566666778888889999999999999999999
Q ss_pred HHHHHhCCCccccccCCChhHHHHHHHhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001411 593 FSAILSNEIGWFDLDENNTGLLISTLAADATLVRSALAD-RLSIIVQNVALTVTAFVIAFILSWRLAAVVAASLPLLIGA 671 (1082)
Q Consensus 593 ~~~~l~~~~~ffd~~~~~~G~il~r~s~D~~~i~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~p~~~~~ 671 (1082)
++++++.|+.. .+...+++++|++.+++.+.. .+..++..++.++ .+++++.++|++++++++.+|++++.
T Consensus 86 ~~~ll~~~~~~-------~~~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~l~li~l~~~~l~~~i 157 (544)
T TIGR01842 86 FAASFSATLRR-------GKIDGLQALRDLDQLRQFLTGPGLFAFFDAPWMPI-YLLVCFLLHPWIGILALGGAVVLVGL 157 (544)
T ss_pred HHHHhcCcccC-------ccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-HHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 99999999842 245688999999999998876 4444454444443 44677889999999888888877766
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHccHHHHHHcCcHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001411 672 FVAEQLFLKGFGGDYNRAYSRATSVAREAIANIRTVAAYGIEKRISIQFASELSQPNKQALLRGHISGFGYGVSQLLSLC 751 (1082)
Q Consensus 672 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~tIra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 751 (1082)
.++..+..++..++.++...+..+++.|+++|+++||+||.++.+.++|.+..++..+...+.....+....+...+..+
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (544)
T TIGR01842 158 ALLNNRATKKPLKEATEASIRANNLADSALRNAEVIEAMGMMGNLTKRWGRFHSKYLSAQSAASDRAGMLSNLSKYFRIV 237 (544)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHhhHHHHHHhcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666677777888888999999999999999999999999999999998888888777777777777777777
Q ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCCCCCcccccc
Q 001411 752 SYALGLWYASVLIKQKGSNFGDIMKSFMVLIITALAVAETLALAPDIVKGSQALGPVFGILYRKTAIQPDDPASKEVTEI 831 (1082)
Q Consensus 752 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~~~~~~~~~~~~~~~~~~~~~ 831 (1082)
...+.+++|.+++..|.++.|.++++..+......++......+..+..+..+.+|+.++++.+++.++. ...++.
T Consensus 238 ~~~~~~~~g~~l~~~g~it~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~----~~~~~~ 313 (544)
T TIGR01842 238 LQSLVLGLGAYLAIDGEITPGMMIAGSILVGRALAPIDGAIGGWKQFSGARQAYKRLNELLANYPSRDPA----MPLPEP 313 (544)
T ss_pred HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccCC----CCCCCC
Confidence 7788889999999999999999999988888888999999999999999999999999998765432211 111233
Q ss_pred cccEEEEeEEEECCCCCCcccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCccCCCCCHHHHhc
Q 001411 832 KGNIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRR 911 (1082)
Q Consensus 832 ~g~I~~~~Vs~~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR~ 911 (1082)
.+.|+++||+|+|++. +.++|+|+||+|+|||++||||+||||||||+++|+|+++|++|+|.+||+|+.+++.+.+|+
T Consensus 314 ~~~i~~~~v~~~y~~~-~~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~i~~~~~~~~~~ 392 (544)
T TIGR01842 314 EGHLSVENVTIVPPGG-KKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDRETFGK 392 (544)
T ss_pred CCeEEEEEEEEEcCCC-CccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEehhhCCHHHHhh
Confidence 4679999999999732 357999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEcccCccccccHHHHhccCCCCCCHHHHHHHHHHhcHHHHHhhCcccccccccCCCCCCChhHHHHHHHHHHHccC
Q 001411 912 KIGLVQQEPALFSTTIYENIKYGNEDASEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKN 991 (1082)
Q Consensus 912 ~i~~VpQdp~Lf~gTIreNl~~~~~~~~d~ei~~al~~a~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlaLARAlL~~ 991 (1082)
+++||||||++|++|++||+.++.+++++++++++++.++++++++++|+|+||.+|++|.+||||||||++||||++++
T Consensus 393 ~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq~qrl~lARall~~ 472 (544)
T TIGR01842 393 HIGYLPQDVELFPGTVAENIARFGENADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALARALYGD 472 (544)
T ss_pred heEEecCCcccccccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCCcCCCCHHHHHHHHHHHHHhcC
Confidence 99999999999999999999987777899999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEeeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEecCchhhhccCEEEEEeCCEEEEecChHHHhh
Q 001411 992 PSILLLDEATSALDTASENLIQEALDKLM-EGRTTIMVAHRLSTIRNADKIAVLQQGKVAEIGSHEQLLR 1060 (1082)
Q Consensus 992 ~~ILlLDEaTS~LD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~~~DrI~Vl~~G~ive~G~~~eLl~ 1060 (1082)
|+|||||||||+||+++++.+.+.|++.. +++|+|+||||++++..||+|++|++|+++|.|+|++|++
T Consensus 473 ~~ililDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~ith~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 542 (544)
T TIGR01842 473 PKLVVLDEPNSNLDEEGEQALANAIKALKARGITVVVITHRPSLLGCVDKILVLQDGRIARFGERDEVLA 542 (544)
T ss_pred CCEEEEeCCccccCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHHHHhCCEEEEEECCEEEeeCCHHHHhh
Confidence 99999999999999999999999999875 6899999999999999999999999999999999999975
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-74 Score=649.13 Aligned_cols=438 Identities=31% Similarity=0.419 Sum_probs=397.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcc
Q 001411 3 TGHALRYLSQFFVGFAVGFTSVWQLTLLTLAVVPLIAVAGGAYTITMSTLSEKGEAAYGEAGKVAEEIISQVRAVYAFVG 82 (1082)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~ 82 (1082)
+++.+...+..+..++..|+++|.-++++++.+|++.+++.++++..++..+++...+.+..+.+.|.++|+.|+|.|+.
T Consensus 118 LPq~~~~~ivp~~i~i~v~~~~w~aalIllit~PlIPlfMilvg~~a~~~s~~~~~~~~~ls~~FLD~LrGL~TLr~f~~ 197 (559)
T COG4988 118 LPQMFLSAIVPLLILIAIFFFNWAAALILLITAPLIPLFMILVGLAAKDASEKQFSALARLSGHFLDRLRGLETLRAFGR 197 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcChHHHHHhcc
Confidence 35566666677777888899999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCCChHHHHHHHHHHHHHHHHHHHH
Q 001411 83 EAKAIESYSHSLKEALKQGKKSGVAKGIGVGLTYGLLFCAWALLLWYAGILVRH-GDTNGGKAFTTIINVIFSGFALGQA 161 (1082)
Q Consensus 83 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~-~~l~~g~~~~~~~~~~~~~~~l~~~ 161 (1082)
.+...+++.+..++.++..++.-+..-....+..++.++..+++..+.+....+ |+++....+.+++..--.+.|+..+
T Consensus 198 ~~~~~~~i~~~se~fR~~TM~vLriAflSs~vLeffa~lsiAlvAv~~g~~ll~~G~ltl~~~l~~LiLAPEff~PlR~l 277 (559)
T COG4988 198 TEATEERIRKDSEDFRKATMSVLRIAFLSSAVLEFFAYLSIALVAVYIGFRLLGEGDLTLFAGLFVLILAPEFFQPLRDL 277 (559)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCccHHHHHHHHHHhHHHHHHHHHH
Confidence 999999999999999999999988888888888888888888887777777777 8999887766665555667899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCCCCcEEEEEEEEECCCCCCccccceeEEEeCCCEEEEEcC
Q 001411 162 APNLAAIAKGKAAAANIISIIKENSHSSERPGDDGITLPKLAGQIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGP 241 (1082)
Q Consensus 162 ~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~ 241 (1082)
...++.-+.+.++.+.++.+++.+.+..+. ............+++++|++|.||+.+ ++++|+||++++|++++|||+
T Consensus 278 Gs~fH~~~~g~aa~d~i~~~l~~~~~~~~~-~~~~~~~~~~~~ei~~~~l~~~y~~g~-~~l~~l~~t~~~g~~talvG~ 355 (559)
T COG4988 278 GSFFHAAAAGEAAADKLFTLLESPVATPGS-GEKAEVANEPPIEISLENLSFRYPDGK-PALSDLNLTIKAGQLTALVGA 355 (559)
T ss_pred HHHHHHHhhhhhHHHHHHHHhcCCCCCCCC-ccccccccCCCceeeecceEEecCCCC-cccCCceeEecCCcEEEEECC
Confidence 999999999999999999999765543211 110011112233466669999999765 699999999999999999999
Q ss_pred CCCcHHHHHHHHHhCCCCCCcEEEECCeeCCCCCHHHHhhhceEEccCCCcChhcHHHHHhcCCCCCCHHHHHHHHHHhc
Q 001411 242 SGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNILLGKEDASMDRVIEAAKAAN 321 (1082)
Q Consensus 242 sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ti~~ni~~g~~~~~~~~~~~~~~~~~ 321 (1082)
||||||||+++|+|+++|++|+|.+||+++++++.+.||++++||+|+|+||++|+||||++++++.+++++.++++.++
T Consensus 356 SGaGKSTLl~lL~G~~~~~~G~I~vng~~l~~l~~~~~~k~i~~v~Q~p~lf~gTireNi~l~~~~~s~e~i~~al~~a~ 435 (559)
T COG4988 356 SGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQISWVSQNPYLFAGTIRENILLARPDASDEEIIAALDQAG 435 (559)
T ss_pred CCCCHHHHHHHHhCcCCCCCceEEECCccccccCHHHHHhHeeeeCCCCccccccHHHHhhccCCcCCHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHhcCCCCccccccCCCCCCChHHHHHHHHHHhcccCCCeeEEeCcccCCCHHHHHHHHHHHHHHcCCCeEEEEccC
Q 001411 322 AHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHR 401 (1082)
Q Consensus 322 ~~~~i~~lp~g~~t~~g~~g~~LSgGqkqri~lARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~vtH~ 401 (1082)
+.+++.. |+|+||.+||+|.+|||||+|||+|||||+++++++|||||||+||.+||+.+.+.|.++.+++|+|+||||
T Consensus 436 l~~~v~~-p~GLdt~ige~G~~LSgGQ~QRlaLARAll~~~~l~llDEpTA~LD~etE~~i~~~l~~l~~~ktvl~itHr 514 (559)
T COG4988 436 LLEFVPK-PDGLDTVIGEGGAGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQALQELAKQKTVLVITHR 514 (559)
T ss_pred HHHhhcC-CCcccchhccCCCCCCHHHHHHHHHHHHhcCCCCEEEecCCccCCCHhHHHHHHHHHHHHHhCCeEEEEEcC
Confidence 9999999 999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCCEEEEEeCCEEEEecCchhhhhcCchhHHHHHhhh
Q 001411 402 LSTVRDVDTIMVLKNGQVVESGTHVDLISKGGEYAALVNLQS 443 (1082)
Q Consensus 402 ~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~ 443 (1082)
++.+..+|+|++|++|+++++|+|+++.++++.|++++..|.
T Consensus 515 l~~~~~~D~I~vld~G~l~~~g~~~~L~~~~~~y~~l~~~q~ 556 (559)
T COG4988 515 LEDAADADRIVVLDNGRLVEQGTHEELSEKQGLYANLLKQQE 556 (559)
T ss_pred hHHHhcCCEEEEecCCceeccCCHHHHhhcCcHHHHHHHHHh
Confidence 999999999999999999999999999999999999997654
|
|
| >PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-74 Score=703.66 Aligned_cols=434 Identities=25% Similarity=0.347 Sum_probs=374.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchH
Q 001411 5 HALRYLSQFFVGFAVGFTSVWQLTLLTLAVVPLIAVAGGAYTITMSTLSEKGEAAYGEAGKVAEEIISQVRAVYAFVGEA 84 (1082)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~ 84 (1082)
.++..+..+++.++++++++|.+++++++++|+++++...+.++.++..++.++..++..+.+.|.++|+++||+|++|+
T Consensus 143 ~~~~~~~~~~~~~~~l~~~~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~ 222 (588)
T PRK11174 143 QMALAVLVPLLILIAVFPINWAAGLILLGTAPLIPLFMALVGMGAADANRRNFLALARLSGHFLDRLRGLETLRLFNRGE 222 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHhcccH
Confidence 45556667777788889999999999999999988888888999999889999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCChHHH------HHHH---HHHHHHH
Q 001411 85 KAIESYSHSLKEALKQGKKSGVAKGIGVGLTYGLLFCAWALLLWYAGILVRHGDTNGGKA------FTTI---INVIFSG 155 (1082)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~l~~g~~------~~~~---~~~~~~~ 155 (1082)
.+.+++.+..++..+...+..+.......+..++..+..+++++++++.+. |.+|+|.+ +..+ .......
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~t~G~l~~~~~~~~~~~~~~l~~~~~ 301 (588)
T PRK11174 223 AETESIRSASEDFRQRTMEVLRMAFLSSAVLEFFASISIALVAVYFGFSYL-GELNFGHYGTGVTLFAGFFVLILAPEFY 301 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cccccccccccchHHHHHHHHHHhHHHH
Confidence 999999998888888777776666655555555555555455555655544 77887753 1111 2222334
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCCCCcEEEEEEEEECCCCCCccccceeEEEeCCCE
Q 001411 156 FALGQAAPNLAAIAKGKAAAANIISIIKENSHSSERPGDDGITLPKLAGQIEFSEVCFAYPSRPHMVFENLNFSVDAGKT 235 (1082)
Q Consensus 156 ~~l~~~~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~ 235 (1082)
.|+..+...+..+.+++.+++|+.++++.+++.+ .... ........+.|+++||+|.|+++ +++|+|+||+++|||+
T Consensus 302 ~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~-~~~~-~~~~~~~~~~i~~~~vsf~~~~~-~~vL~~i~l~i~~G~~ 378 (588)
T PRK11174 302 QPLRDLGTFYHAKAQAVGAAESLVTFLETPLAHP-QQGE-KELASNDPVTIEAEDLEILSPDG-KTLAGPLNFTLPAGQR 378 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccc-CCCc-cccCCCCCceEEEEeeEEeccCC-CeeeeeeEEEEcCCCE
Confidence 6788888889999999999999999997654321 1111 00111123469999999877543 4599999999999999
Q ss_pred EEEEcCCCCcHHHHHHHHHhCCCCCCcEEEECCeeCCCCCHHHHhhhceEEccCCCcChhcHHHHHhcCCCCCCHHHHHH
Q 001411 236 FAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNILLGKEDASMDRVIE 315 (1082)
Q Consensus 236 ~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ti~~ni~~g~~~~~~~~~~~ 315 (1082)
+|||||||||||||+++|+|+| |++|+|.+||+|+++++.+++|++|+||||+|+||++||+|||++|+|+.+++++++
T Consensus 379 vaIvG~SGsGKSTL~~lL~g~~-p~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~LF~~TI~eNI~~g~~~~~~eei~~ 457 (588)
T PRK11174 379 IALVGPSGAGKTSLLNALLGFL-PYQGSLKINGIELRELDPESWRKHLSWVGQNPQLPHGTLRDNVLLGNPDASDEQLQQ 457 (588)
T ss_pred EEEECCCCCCHHHHHHHHhcCC-CCCcEEEECCEecccCCHHHHHhheEEecCCCcCCCcCHHHHhhcCCCCCCHHHHHH
Confidence 9999999999999999999999 999999999999999999999999999999999999999999999999899999999
Q ss_pred HHHHhchHHHHhcCCCCccccccCCCCCCChHHHHHHHHHHhcccCCCeeEEeCcccCCCHHHHHHHHHHHHHHcCCCeE
Q 001411 316 AAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNRTT 395 (1082)
Q Consensus 316 ~~~~~~~~~~i~~lp~g~~t~~g~~g~~LSgGqkqri~lARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~ 395 (1082)
+|+.+++++++.++|+||||.+||+|.+|||||||||+|||||++||+|||||||||+||+++++.+++.|.++.+++|+
T Consensus 458 al~~a~l~~~i~~lp~G~dT~vge~G~~LSGGQrQRialARAll~~~~IliLDE~TSaLD~~te~~i~~~l~~~~~~~Tv 537 (588)
T PRK11174 458 ALENAWVSEFLPLLPQGLDTPIGDQAAGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAASRRQTT 537 (588)
T ss_pred HHHHhCHHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhCCCEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998889999
Q ss_pred EEEccCccccccCCEEEEEeCCEEEEecCchhhhhcCchhHHHHHhhh
Q 001411 396 IVVAHRLSTVRDVDTIMVLKNGQVVESGTHVDLISKGGEYAALVNLQS 443 (1082)
Q Consensus 396 i~vtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~ 443 (1082)
|+||||++.++.||+|++|++|+++++|+|+||+++++.|++++..|.
T Consensus 538 IiItHrl~~i~~aD~Iivl~~G~i~e~G~~~eL~~~~~~y~~l~~~q~ 585 (588)
T PRK11174 538 LMVTHQLEDLAQWDQIWVMQDGQIVQQGDYAELSQAGGLFATLLAHRQ 585 (588)
T ss_pred EEEecChHHHHhCCEEEEEeCCeEeecCCHHHHHhcchHHHHHHHHhh
Confidence 999999999999999999999999999999999999999999987654
|
|
| >PRK10261 glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-74 Score=707.17 Aligned_cols=498 Identities=26% Similarity=0.394 Sum_probs=364.2
Q ss_pred cEEEEEEEEECCCC--CCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHHhCCCCCCcEEEECCeeCC----------
Q 001411 205 QIEFSEVCFAYPSR--PHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLK---------- 272 (1082)
Q Consensus 205 ~i~~~~v~~~y~~~--~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~---------- 272 (1082)
.|+++|++++|+.. ..++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.
T Consensus 12 ~l~v~~l~~~y~~~~~~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~~G~i~~~g~~~~~~~~~~~~~~ 91 (623)
T PRK10261 12 VLAVENLNIAFMQEQQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSRQVIELS 91 (623)
T ss_pred eEEEeceEEEecCCCCceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCeEEEECCEEeccccccccccc
Confidence 59999999999632 235999999999999999999999999999999999999999999999997552
Q ss_pred CCCHH---HHh-hhceEEccCC--CcChh-cHHHHHhcCCC---CCCH----HHHHHHHHHhchHHHHhcCCCCcccccc
Q 001411 273 SLQLK---WLR-EQMGLVSQEP--ALFAT-SIANNILLGKE---DASM----DRVIEAAKAANAHSFVEGLPDGYQTQVG 338 (1082)
Q Consensus 273 ~~~~~---~~~-~~i~~v~Q~~--~l~~~-ti~~ni~~g~~---~~~~----~~~~~~~~~~~~~~~i~~lp~g~~t~~g 338 (1082)
..+.. .+| +.||||+|+| .+++. ||+||+.++.. .... +++.++++..++ ++ .+....
T Consensus 92 ~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL-------~~-~~~~~~ 163 (623)
T PRK10261 92 EQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMVEAKRMLDQVRI-------PE-AQTILS 163 (623)
T ss_pred cCCHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCC-------CC-hhhHHh
Confidence 12222 233 4799999998 56664 99999987521 1111 223333333322 11 012345
Q ss_pred CCCCCCChHHHHHHHHHHhcccCCCeeEEeCcccCCCHHHHHHHHHHHHHHc-C-CCeEEEEccCccccc-cCCEEEEEe
Q 001411 339 EGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIM-S-NRTTIVVAHRLSTVR-DVDTIMVLK 415 (1082)
Q Consensus 339 ~~g~~LSgGqkqri~lARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~-~-~~t~i~vtH~~~~~~-~~d~i~~l~ 415 (1082)
....+|||||||||+|||||+.+|++|||||||++||+.+++.+.+.++++. + ++|+|+|||+++.+. .||+|++|+
T Consensus 164 ~~~~~LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~~g~tvi~itHdl~~~~~~adri~vl~ 243 (623)
T PRK10261 164 RYPHQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMGVVAEIADRVLVMY 243 (623)
T ss_pred CCCccCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEee
Confidence 5667899999999999999999999999999999999999999999999885 3 789999999999885 489999999
Q ss_pred CCEEEEecCchhhhhcCc-hhH-HHHHhhhccccCCCCcccCCCCCCCCCCCCCCCCcccchhhhhhhhhhhccCCCCCC
Q 001411 416 NGQVVESGTHVDLISKGG-EYA-ALVNLQSSEHLSNPSSICYSGSSRYSSFRDFPSSRRYDVEFESSKRRELQSSDQSFA 493 (1082)
Q Consensus 416 ~G~i~~~g~~~~l~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 493 (1082)
+|++++.|+++++..... .|. .+.... + ....
T Consensus 244 ~G~i~~~g~~~~~~~~~~~~~~~~l~~~~------------------~----------------------~~~~------ 277 (623)
T PRK10261 244 QGEAVETGSVEQIFHAPQHPYTRALLAAV------------------P----------------------QLGA------ 277 (623)
T ss_pred CCeecccCCHHHhhcCCCChhhhhhhhcc------------------C----------------------cccc------
Confidence 999999998877643210 000 000000 0 0000
Q ss_pred CchhHHHHHHHhcchhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCchhhHhHHHHHHHHHHHHHHHHHHHHHHH
Q 001411 494 PSPSIWELLKLNAAEWPYAVLGSVGAILAGMEAPLFALGITHILTAFYSPHDSQIKRVVDQVALIFVGLAVVTIPVYLLQ 573 (1082)
Q Consensus 494 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 573 (1082)
+.. .
T Consensus 278 -----------------------------------------------~~~--~--------------------------- 281 (623)
T PRK10261 278 -----------------------------------------------MKG--L--------------------------- 281 (623)
T ss_pred -----------------------------------------------ccc--c---------------------------
Confidence 000 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCccccccCCChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001411 574 HYFYTLMGEHLTARVRLSMFSAILSNEIGWFDLDENNTGLLISTLAADATLVRSALADRLSIIVQNVALTVTAFVIAFIL 653 (1082)
Q Consensus 574 ~~~~~~~~~~~~~~l~~~l~~~~l~~~~~ffd~~~~~~G~il~r~s~D~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 653 (1082)
..+-. +... .
T Consensus 282 ------------------------~~~~~-~~~~--~------------------------------------------- 291 (623)
T PRK10261 282 ------------------------DYPRR-FPLI--S------------------------------------------- 291 (623)
T ss_pred ------------------------cCCcc-cccc--c-------------------------------------------
Confidence 00000 0000 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHccHHHHHHcCcHHHHHHHHHHHHhhHHHHHHH
Q 001411 654 SWRLAAVVAASLPLLIGAFVAEQLFLKGFGGDYNRAYSRATSVAREAIANIRTVAAYGIEKRISIQFASELSQPNKQALL 733 (1082)
Q Consensus 654 ~~~l~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~tIra~~~~~~~~~~~~~~~~~~~~~~~~ 733 (1082)
. ...
T Consensus 292 ------------------------------------------------------------------------~-~~~--- 295 (623)
T PRK10261 292 ------------------------------------------------------------------------L-EHP--- 295 (623)
T ss_pred ------------------------------------------------------------------------c-ccc---
Confidence 0 000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 001411 734 RGHISGFGYGVSQLLSLCSYALGLWYASVLIKQKGSNFGDIMKSFMVLIITALAVAETLALAPDIVKGSQALGPVFGILY 813 (1082)
Q Consensus 734 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~~~ 813 (1082)
+ . .
T Consensus 296 -------------------------------------------------------------------------~---~-~ 298 (623)
T PRK10261 296 -------------------------------------------------------------------------A---K-Q 298 (623)
T ss_pred -------------------------------------------------------------------------c---c-c
Confidence 0 0 0
Q ss_pred ccccCCCCCCCCcccccccccEEEEeEEEECCCCC--------CcccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHhc
Q 001411 814 RKTAIQPDDPASKEVTEIKGNIELRNVSFKYPVRP--------DITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMR 885 (1082)
Q Consensus 814 ~~~~~~~~~~~~~~~~~~~g~I~~~~Vs~~Y~~~~--------~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~r 885 (1082)
.+.......+ +...-|+++||+++|+.+. ..++|+||||+|++||++||+|+||||||||+++|.|
T Consensus 299 ~~~~~~~~~~------~~~~~L~~~~l~~~y~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~G 372 (623)
T PRK10261 299 EPPIEQDTVV------DGEPILQVRNLVTRFPLRSGLLNRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLR 372 (623)
T ss_pred Cccccccccc------CCCceEEEeeeEEEEcCCCccccccCCceEEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHc
Confidence 0000000000 0012499999999996311 2469999999999999999999999999999999999
Q ss_pred cccCCccEEEECCccCCCCCHH---HHhcceEEEcccCc--ccc-ccHHHHhccCC--CC-CCH----HHHHHHHHHhcH
Q 001411 886 FYDPISGTVLIDGYDIRTLNLR---SLRRKIGLVQQEPA--LFS-TTIYENIKYGN--ED-ASE----IELMKATKAANA 952 (1082)
Q Consensus 886 l~~p~~G~I~idG~di~~i~~~---~lR~~i~~VpQdp~--Lf~-gTIreNl~~~~--~~-~~d----~ei~~al~~a~l 952 (1082)
+.+|++|+|.++|.++...+.. .+|++|+||||+|. +++ .|+.+|+..+. .. ... +++.+.++.+++
T Consensus 373 l~~p~~G~I~~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~gL 452 (623)
T PRK10261 373 LVESQGGEIIFNGQRIDTLSPGKLQALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRVHGLLPGKAAAARVAWLLERVGL 452 (623)
T ss_pred CCCCCCcEEEECCEECCcCCHHHHHHhcCCeEEEecCchhhcCCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCC
Confidence 9999999999999999877643 46789999999983 665 59999986531 11 111 234455555555
Q ss_pred H-HHHhhCcccccccccCCCCCCChhHHHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHhcC--CceEEEEe
Q 001411 953 H-GFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLME--GRTTIMVA 1029 (1082)
Q Consensus 953 ~-~~i~~lp~gldt~v~e~G~~LSgGQrQrlaLARAlL~~~~ILlLDEaTS~LD~~te~~I~~~l~~~~~--~~TvI~Ia 1029 (1082)
. +.. ......||||||||++|||||+.+|+|||||||||+||+.+.+.|.+.|++..+ +.|+|+||
T Consensus 453 ~~~~~-----------~~~~~~LSgGqrQRv~iAraL~~~p~llllDEPts~LD~~~~~~i~~ll~~l~~~~g~tvi~is 521 (623)
T PRK10261 453 LPEHA-----------WRYPHEFSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIAYLFIS 521 (623)
T ss_pred CHHHh-----------hCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 2 222 223457999999999999999999999999999999999999999999998753 78999999
Q ss_pred cCchhhhc-cCEEEEEeCCEEEEecChHHHhhhccchHHH-HHHH
Q 001411 1030 HRLSTIRN-ADKIAVLQQGKVAEIGSHEQLLRKENGIYKQ-LIRL 1072 (1082)
Q Consensus 1030 Hrl~ti~~-~DrI~Vl~~G~ive~G~~~eLl~~~~g~f~~-l~~~ 1072 (1082)
|+++.+.. ||||+||++|+|+|.|+++++..++...|.+ +++.
T Consensus 522 Hdl~~v~~~~dri~vl~~G~iv~~g~~~~i~~~p~~~~~~~l~~~ 566 (623)
T PRK10261 522 HDMAVVERISHRVAVMYLGQIVEIGPRRAVFENPQHPYTRKLMAA 566 (623)
T ss_pred CCHHHHHHhCCEEEEEECCEEEEecCHHHHhcCCCCHHHHHHHhh
Confidence 99999976 9999999999999999999998765556654 5443
|
|
| >PRK13549 xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-75 Score=697.13 Aligned_cols=462 Identities=22% Similarity=0.403 Sum_probs=356.1
Q ss_pred cEEEEEEEEECCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHHhCCCC--CCcEEEECCeeCCCCCHHH-Hhh
Q 001411 205 QIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEP--TSGKILLDGHDLKSLQLKW-LRE 281 (1082)
Q Consensus 205 ~i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~--~~G~i~~~g~~~~~~~~~~-~~~ 281 (1082)
.++++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++| ++|+|.++|.++...+... +++
T Consensus 5 ~l~~~nl~~~~~~--~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 82 (506)
T PRK13549 5 LLEMKNITKTFGG--VKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIRDTERA 82 (506)
T ss_pred eEEEeeeEEEeCC--eEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHHC
Confidence 4899999999974 3499999999999999999999999999999999999996 8999999999997766543 467
Q ss_pred hceEEccCCCcChh-cHHHHHhcCCCC-----CCHHHHHHHHHHhchHHHHhcCCCCccccccCCCCCCChHHHHHHHHH
Q 001411 282 QMGLVSQEPALFAT-SIANNILLGKED-----ASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIA 355 (1082)
Q Consensus 282 ~i~~v~Q~~~l~~~-ti~~ni~~g~~~-----~~~~~~~~~~~~~~~~~~i~~lp~g~~t~~g~~g~~LSgGqkqri~lA 355 (1082)
.++||+|++.+++. |++||+.++... .+.++..+. +.+.++.+ |++........+||||||||++||
T Consensus 83 ~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~-----~~~~l~~~--~l~~~~~~~~~~LSgGqkqrv~la 155 (506)
T PRK13549 83 GIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLR-----AQKLLAQL--KLDINPATPVGNLGLGQQQLVEIA 155 (506)
T ss_pred CeEEEEeccccCCCCcHHHHhhhcccccccCCcCHHHHHHH-----HHHHHHHc--CCCCCcccchhhCCHHHHHHHHHH
Confidence 79999999988875 999999886431 111221111 12233333 444444556678999999999999
Q ss_pred HhcccCCCeeEEeCcccCCCHHHHHHHHHHHHHHc-CCCeEEEEccCcccccc-CCEEEEEeCCEEEEecCchhhhhcCc
Q 001411 356 RAVLRNPKILLLDEATSALDAESELIVQRALEKIM-SNRTTIVVAHRLSTVRD-VDTIMVLKNGQVVESGTHVDLISKGG 433 (1082)
Q Consensus 356 Ral~~~~~illlDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~~ 433 (1082)
|||+.+|++||||||||+||+.+...+.+.|.++. +++|+|+|||+++.+.. ||+|++|++|+++..|+.+++...
T Consensus 156 ~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvi~~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~-- 233 (506)
T PRK13549 156 KALNKQARLLILDEPTASLTESETAVLLDIIRDLKAHGIACIYISHKLNEVKAISDTICVIRDGRHIGTRPAAGMTED-- 233 (506)
T ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHHhcCEEEEEECCEEeeecccccCCHH--
Confidence 99999999999999999999999999999998874 47899999999998865 899999999999987754332100
Q ss_pred hhHHHHHhhhccccCCCCcccCCCCCCCCCCCCCCCCcccchhhhhhhhhhhccCCCCCCCchhHHHHHHHhcchhHHHH
Q 001411 434 EYAALVNLQSSEHLSNPSSICYSGSSRYSSFRDFPSSRRYDVEFESSKRRELQSSDQSFAPSPSIWELLKLNAAEWPYAV 513 (1082)
Q Consensus 434 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 513 (1082)
+..
T Consensus 234 ---~~~-------------------------------------------------------------------------- 236 (506)
T PRK13549 234 ---DII-------------------------------------------------------------------------- 236 (506)
T ss_pred ---HHH--------------------------------------------------------------------------
Confidence 000
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCchhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001411 514 LGSVGAILAGMEAPLFALGITHILTAFYSPHDSQIKRVVDQVALIFVGLAVVTIPVYLLQHYFYTLMGEHLTARVRLSMF 593 (1082)
Q Consensus 514 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 593 (1082)
..
T Consensus 237 ------------------------~~------------------------------------------------------ 238 (506)
T PRK13549 237 ------------------------TM------------------------------------------------------ 238 (506)
T ss_pred ------------------------HH------------------------------------------------------
Confidence 00
Q ss_pred HHHHhCCCccccccCCChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001411 594 SAILSNEIGWFDLDENNTGLLISTLAADATLVRSALADRLSIIVQNVALTVTAFVIAFILSWRLAAVVAASLPLLIGAFV 673 (1082)
Q Consensus 594 ~~~l~~~~~ffd~~~~~~G~il~r~s~D~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~p~~~~~~~ 673 (1082)
. +.. +.
T Consensus 239 --~-------~~~---~~-------------------------------------------------------------- 244 (506)
T PRK13549 239 --M-------VGR---EL-------------------------------------------------------------- 244 (506)
T ss_pred --h-------hCc---Cc--------------------------------------------------------------
Confidence 0 000 00
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHccHHHHHHcCcHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001411 674 AEQLFLKGFGGDYNRAYSRATSVAREAIANIRTVAAYGIEKRISIQFASELSQPNKQALLRGHISGFGYGVSQLLSLCSY 753 (1082)
Q Consensus 674 ~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~tIra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 753 (1082)
T Consensus 245 -------------------------------------------------------------------------------- 244 (506)
T PRK13549 245 -------------------------------------------------------------------------------- 244 (506)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCCCCCcccccccc
Q 001411 754 ALGLWYASVLIKQKGSNFGDIMKSFMVLIITALAVAETLALAPDIVKGSQALGPVFGILYRKTAIQPDDPASKEVTEIKG 833 (1082)
Q Consensus 754 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~~~~~~~~~~~~~~~~~~~~~~g 833 (1082)
.+ ..+..... +...
T Consensus 245 ----------------------------------------------------~~------~~~~~~~~--------~~~~ 258 (506)
T PRK13549 245 ----------------------------------------------------TA------LYPREPHT--------IGEV 258 (506)
T ss_pred ----------------------------------------------------cc------cccccccC--------CCCc
Confidence 00 00000000 0012
Q ss_pred cEEEEeEEEECCCCCCcccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccc-CCccEEEECCccCCCCCH-HHHhc
Q 001411 834 NIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYD-PISGTVLIDGYDIRTLNL-RSLRR 911 (1082)
Q Consensus 834 ~I~~~~Vs~~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~-p~~G~I~idG~di~~i~~-~~lR~ 911 (1082)
.|+++||+++|+.+.+.++|+|+||+|++||++||+|+||||||||+++|.|+++ |++|+|.++|.++...+. +.+|+
T Consensus 259 ~l~~~~l~~~~~~~~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~~~G~i~~~g~~~~~~~~~~~~~~ 338 (506)
T PRK13549 259 ILEVRNLTAWDPVNPHIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFIDGKPVKIRNPQQAIAQ 338 (506)
T ss_pred eEEEecCccccccccccccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCcEEEECCEECCCCCHHHHHHC
Confidence 4899999999953223469999999999999999999999999999999999999 599999999999875543 45678
Q ss_pred ceEEEcccC---cccc-ccHHHHhccCCC-C------CCHHHHHHHHHHhcHHHHHhhCcccccc-cccCCCCCCChhHH
Q 001411 912 KIGLVQQEP---ALFS-TTIYENIKYGNE-D------ASEIELMKATKAANAHGFISRMPEGYQS-HVGDRGVQLSGGQK 979 (1082)
Q Consensus 912 ~i~~VpQdp---~Lf~-gTIreNl~~~~~-~------~~d~ei~~al~~a~l~~~i~~lp~gldt-~v~e~G~~LSgGQr 979 (1082)
+++||||+| .+|+ .|+.+|+.++.. . .+.++. ...+.+.++.+ |++. ........||||||
T Consensus 339 ~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~~--~l~~~~~~~~~~~LSgG~k 411 (506)
T PRK13549 339 GIAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAAE-----LKTILESIQRL--KVKTASPELAIARLSGGNQ 411 (506)
T ss_pred CCEEeCcchhhCCCcCCCCHHHHhhhhhhhhhccCcccChHHH-----HHHHHHHHHhc--CccCCCcccccccCCHHHH
Confidence 899999997 3554 699999976421 0 011111 11233344443 3321 23344567999999
Q ss_pred HHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEecCchhhhc-cCEEEEEeCCEEEEecChHH
Q 001411 980 QRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLM-EGRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGSHEQ 1057 (1082)
Q Consensus 980 QrlaLARAlL~~~~ILlLDEaTS~LD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~G~~~e 1057 (1082)
||++||||++.+|+||||||||++||+.+.+.+.+.|++.. +++|||+|||+++.+.. ||++++|++|+++..|++++
T Consensus 412 qrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~~sHd~~~~~~~~d~v~~l~~G~i~~~~~~~~ 491 (506)
T PRK13549 412 QKAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQQGVAIIVISSELPEVLGLSDRVLVMHEGKLKGDLINHN 491 (506)
T ss_pred HHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEecccc
Confidence 99999999999999999999999999999999999999864 48899999999999865 99999999999999999988
Q ss_pred Hh
Q 001411 1058 LL 1059 (1082)
Q Consensus 1058 Ll 1059 (1082)
+.
T Consensus 492 ~~ 493 (506)
T PRK13549 492 LT 493 (506)
T ss_pred CC
Confidence 64
|
|
| >PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-74 Score=696.36 Aligned_cols=465 Identities=27% Similarity=0.456 Sum_probs=354.5
Q ss_pred cEEEEEEEEECCCC--CCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHHhCCCC-----CCcEEEECCeeCCCCCHH
Q 001411 205 QIEFSEVCFAYPSR--PHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEP-----TSGKILLDGHDLKSLQLK 277 (1082)
Q Consensus 205 ~i~~~~v~~~y~~~--~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~-----~~G~i~~~g~~~~~~~~~ 277 (1082)
.++++|++++|++. ..++|+|+||++++||+++|+||||||||||+++|+|+++| ++|+|.++|.++...+..
T Consensus 5 ~l~~~~l~~~~~~~~~~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~ 84 (529)
T PRK15134 5 LLAIENLSVAFRQQQTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHASEQ 84 (529)
T ss_pred eEEEeceEEEecCCCCceeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCCHH
Confidence 48999999999632 23599999999999999999999999999999999999987 799999999998776543
Q ss_pred H---Hh-hhceEEccCCC--cCh-hcHHHHHhcCC---CCCC----HHHHHHHHHHhchHHHHhcCCCCccccccCCCCC
Q 001411 278 W---LR-EQMGLVSQEPA--LFA-TSIANNILLGK---EDAS----MDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQ 343 (1082)
Q Consensus 278 ~---~~-~~i~~v~Q~~~--l~~-~ti~~ni~~g~---~~~~----~~~~~~~~~~~~~~~~i~~lp~g~~t~~g~~g~~ 343 (1082)
. +| +.+||++|++. +++ .|+++|+.++. ...+ .+++.++++..++.+. .........+
T Consensus 85 ~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~--------~~~~~~~~~~ 156 (529)
T PRK15134 85 TLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQA--------AKRLTDYPHQ 156 (529)
T ss_pred HHHHHhcCceEEEecCchhhcCchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCCh--------HHHHhhCCcc
Confidence 2 33 57999999985 444 48999986421 0111 1233334443333210 0123445568
Q ss_pred CChHHHHHHHHHHhcccCCCeeEEeCcccCCCHHHHHHHHHHHHHHc--CCCeEEEEccCcccccc-CCEEEEEeCCEEE
Q 001411 344 LSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIM--SNRTTIVVAHRLSTVRD-VDTIMVLKNGQVV 420 (1082)
Q Consensus 344 LSgGqkqri~lARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~--~~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~ 420 (1082)
||||||||++|||||+.+|++||||||||+||+.+.+.+.+.|+++. .++|+|+|||+++.+.. ||+|++|++|+++
T Consensus 157 LSgGe~qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~dri~~l~~G~i~ 236 (529)
T PRK15134 157 LSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLSIVRKLADRVAVMQNGRCV 236 (529)
T ss_pred cCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHhcCEEEEEECCEEE
Confidence 99999999999999999999999999999999999999999999874 37899999999998864 8999999999999
Q ss_pred EecCchhhhhcCchhHHHHHhhhccccCCCCcccCCCCCCCCCCCCCCCCcccchhhhhhhhhhhccCCCCCCCchhHHH
Q 001411 421 ESGTHVDLISKGGEYAALVNLQSSEHLSNPSSICYSGSSRYSSFRDFPSSRRYDVEFESSKRRELQSSDQSFAPSPSIWE 500 (1082)
Q Consensus 421 ~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 500 (1082)
+.|+++++..... ....
T Consensus 237 ~~g~~~~~~~~~~--------------------------------------------------------------~~~~- 253 (529)
T PRK15134 237 EQNRAATLFSAPT--------------------------------------------------------------HPYT- 253 (529)
T ss_pred EeCCHHHHhhCCC--------------------------------------------------------------CHHH-
Confidence 8887655431100 0000
Q ss_pred HHHHhcchhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCchhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001411 501 LLKLNAAEWPYAVLGSVGAILAGMEAPLFALGITHILTAFYSPHDSQIKRVVDQVALIFVGLAVVTIPVYLLQHYFYTLM 580 (1082)
Q Consensus 501 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 580 (1082)
..
T Consensus 254 ---------------------------------------------~~--------------------------------- 255 (529)
T PRK15134 254 ---------------------------------------------QK--------------------------------- 255 (529)
T ss_pred ---------------------------------------------HH---------------------------------
Confidence 00
Q ss_pred HHHHHHHHHHHHHHHHHhCCCccccccCCChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001411 581 GEHLTARVRLSMFSAILSNEIGWFDLDENNTGLLISTLAADATLVRSALADRLSIIVQNVALTVTAFVIAFILSWRLAAV 660 (1082)
Q Consensus 581 ~~~~~~~l~~~l~~~~l~~~~~ffd~~~~~~G~il~r~s~D~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~ 660 (1082)
+...+ +
T Consensus 256 ---------------~~~~~---------~-------------------------------------------------- 261 (529)
T PRK15134 256 ---------------LLNSE---------P-------------------------------------------------- 261 (529)
T ss_pred ---------------HHHhC---------c--------------------------------------------------
Confidence 00000 0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHccHHHHHHcCcHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 001411 661 VAASLPLLIGAFVAEQLFLKGFGGDYNRAYSRATSVAREAIANIRTVAAYGIEKRISIQFASELSQPNKQALLRGHISGF 740 (1082)
Q Consensus 661 ~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~tIra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 740 (1082)
T Consensus 262 -------------------------------------------------------------------------------- 261 (529)
T PRK15134 262 -------------------------------------------------------------------------------- 261 (529)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCC
Q 001411 741 GYGVSQLLSLCSYALGLWYASVLIKQKGSNFGDIMKSFMVLIITALAVAETLALAPDIVKGSQALGPVFGILYRKTAIQP 820 (1082)
Q Consensus 741 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~~~~~~~~~~ 820 (1082)
+ ..+. .+
T Consensus 262 ------------------------------------------------------------------~------~~~~-~~ 268 (529)
T PRK15134 262 ------------------------------------------------------------------S------GDPV-PL 268 (529)
T ss_pred ------------------------------------------------------------------c------cccc-cc
Confidence 0 0000 00
Q ss_pred CCCCCcccccccccEEEEeEEEECCCC--------CCcccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCcc
Q 001411 821 DDPASKEVTEIKGNIELRNVSFKYPVR--------PDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISG 892 (1082)
Q Consensus 821 ~~~~~~~~~~~~g~I~~~~Vs~~Y~~~--------~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G 892 (1082)
. .. ....|+++||+++|+.. .+.++|+|+||+|++||++||+|+||||||||+++|.|++ |++|
T Consensus 269 ~-~~------~~~~l~~~~l~~~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~-~~~G 340 (529)
T PRK15134 269 P-EP------ASPLLDVEQLQVAFPIRKGILKRTVDHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLI-NSQG 340 (529)
T ss_pred C-CC------CCCcccccCcEEEeecCccccccccccceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcC-CCCc
Confidence 0 00 01148999999999521 1246999999999999999999999999999999999998 4899
Q ss_pred EEEECCccCCCCCHHH---HhcceEEEcccC--cccc-ccHHHHhccCCC----CCC----HHHHHHHHHHhcHHHHHhh
Q 001411 893 TVLIDGYDIRTLNLRS---LRRKIGLVQQEP--ALFS-TTIYENIKYGNE----DAS----EIELMKATKAANAHGFISR 958 (1082)
Q Consensus 893 ~I~idG~di~~i~~~~---lR~~i~~VpQdp--~Lf~-gTIreNl~~~~~----~~~----d~ei~~al~~a~l~~~i~~ 958 (1082)
+|.+||.++..++... +|++++||||+| .+|+ .|+++|+.++.. ..+ ++.+.++++..++.+
T Consensus 341 ~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---- 416 (529)
T PRK15134 341 EIWFDGQPLHNLNRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQPTLSAAQREQQVIAVMEEVGLDP---- 416 (529)
T ss_pred EEEECCEEccccchhhHHHhhhceEEEEeCchhhcCCcccHHHHHHHHHHhccccCChHHHHHHHHHHHHHcCCCH----
Confidence 9999999998776543 578899999998 3665 599999976421 011 123334444444421
Q ss_pred CcccccccccCCCCCCChhHHHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHhcC--CceEEEEecCchhhh
Q 001411 959 MPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLME--GRTTIMVAHRLSTIR 1036 (1082)
Q Consensus 959 lp~gldt~v~e~G~~LSgGQrQrlaLARAlL~~~~ILlLDEaTS~LD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~ 1036 (1082)
........+||||||||++|||||+.+|+||||||||++||+.+.+.+.+.|++..+ ++|||+|||+++.+.
T Consensus 417 ------~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsHd~~~~~ 490 (529)
T PRK15134 417 ------ETRHRYPAEFSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHQLAYLFISHDLHVVR 490 (529)
T ss_pred ------HHHhcCCccCCHHHHHHHHHHHHHhCCCCEEEeeCCccccCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHH
Confidence 112334467999999999999999999999999999999999999999999998752 789999999999987
Q ss_pred c-cCEEEEEeCCEEEEecChHHHhhhcc
Q 001411 1037 N-ADKIAVLQQGKVAEIGSHEQLLRKEN 1063 (1082)
Q Consensus 1037 ~-~DrI~Vl~~G~ive~G~~~eLl~~~~ 1063 (1082)
. ||+|++|++|+|++.|+++++++.+.
T Consensus 491 ~~~d~i~~l~~G~i~~~~~~~~~~~~~~ 518 (529)
T PRK15134 491 ALCHQVIVLRQGEVVEQGDCERVFAAPQ 518 (529)
T ss_pred HhcCeEEEEECCEEEEEcCHHHHhcCCC
Confidence 5 99999999999999999999986443
|
|
| >COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-73 Score=690.80 Aligned_cols=430 Identities=39% Similarity=0.636 Sum_probs=395.2
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHH
Q 001411 9 YLSQFFVGFAVGFTSVWQLTLLTLAVVPLIAVAGGAYTITMSTLSEKGEAAYGEAGKVAEEIISQVRAVYAFVGEAKAIE 88 (1082)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~ 88 (1082)
.+..+++.+++++..+|.+++++++..|++.+...++.++.++..++.++..++..+.+.|.++|++++|+|+.++...+
T Consensus 136 ~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~f~~~~~~~~ 215 (567)
T COG1132 136 SILLLIGSLVLLFSLSWRLALILLLILPLLALVLSLLARKSRKLSRRVREALGELNARLLESLSGIRVIKAFGAEDRELK 215 (567)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhhhHHHHH
Confidence 56778888899999999999999999999998888888777888888999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001411 89 SYSHSLKEALKQGKKSGVAKGIGVGLTYGLLFCAWALLLWYAGILVRHGDTNGGKAFTTIINVIFSGFALGQAAPNLAAI 168 (1082)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~l~~g~~~~~~~~~~~~~~~l~~~~~~~~~~ 168 (1082)
++.+..++..+...+.....+...++...+..+..++++++|++++..+.+++|.+.+++.+......|+..+...+..+
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~ 295 (567)
T COG1132 216 RFEEANEELRRANLRASRLEALLAPLMLLLSSLGTVLVLALGGFLVLSGSLTVGALAAFILYLLRLLTPILQLGEVVSLL 295 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99998888888887777777777778888888888899999999999999999998888777777778899999999999
Q ss_pred HHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCCCCcEEEEEEEEECCCCCCccccceeEEEeCCCEEEEEcCCCCcHHH
Q 001411 169 AKGKAAAANIISIIKENSHSSERPGDDGITLPKLAGQIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKST 248 (1082)
Q Consensus 169 ~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKST 248 (1082)
..+..+++|++++++.+++..+.... .....+.|+++||+|+|++ ++++|+|+||+++|||++||||||||||||
T Consensus 296 ~~~~~a~~ri~~~l~~~~~~~~~~~~----~~~~~~~I~f~~vsf~y~~-~~~vl~~is~~i~~Ge~vaiVG~sGsGKST 370 (567)
T COG1132 296 QRASAAAERLFELLDEEPEVEDPPDP----LKDTIGSIEFENVSFSYPG-KKPVLKDISFSIEPGEKVAIVGPSGSGKST 370 (567)
T ss_pred HHHHHHHHHHHHHHcCCccccCCCCC----CCCCCCeEEEEEEEEEcCC-CCccccCceEEEcCCCEEEEECCCCCCHHH
Confidence 99999999999999875543211111 1223467999999999985 245999999999999999999999999999
Q ss_pred HHHHHHhCCCCCCcEEEECCeeCCCCCHHHHhhhceEEccCCCcChhcHHHHHhcCCCCCCHHHHHHHHHHhchHHHHhc
Q 001411 249 IISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNILLGKEDASMDRVIEAAKAANAHSFVEG 328 (1082)
Q Consensus 249 ll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~ 328 (1082)
|+++|+|+|+|++|+|.+||+|+++++.+++|++|+||||+|+||++||+|||.+|+|+++++++++||+.+++++++.+
T Consensus 371 l~~LL~r~~~~~~G~I~idg~dI~~i~~~~lr~~I~~V~Qd~~LF~~TI~~NI~~g~~~at~eei~~a~k~a~~~d~I~~ 450 (567)
T COG1132 371 LIKLLLRLYDPTSGEILIDGIDIRDISLDSLRKRIGIVSQDPLLFSGTIRENIALGRPDATDEEIEEALKLANAHEFIAN 450 (567)
T ss_pred HHHHHhccCCCCCCeEEECCEehhhcCHHHHHHhccEEcccceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCccccccCCCCCCChHHHHHHHHHHhcccCCCeeEEeCcccCCCHHHHHHHHHHHHHHcCCCeEEEEccCccccccC
Q 001411 329 LPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRDV 408 (1082)
Q Consensus 329 lp~g~~t~~g~~g~~LSgGqkqri~lARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~vtH~~~~~~~~ 408 (1082)
+|+||||.+||+|.+||||||||++||||+++||+|||||||||+||+++|+.+++.+.++.++||+|+|+||+++++.|
T Consensus 451 lp~g~dt~vge~G~~LSgGQrQrlaiARall~~~~ILILDEaTSalD~~tE~~I~~~l~~l~~~rT~iiIaHRlsti~~a 530 (567)
T COG1132 451 LPDGYDTIVGERGVNLSGGQRQRLAIARALLRNPPILILDEATSALDTETEALIQDALKKLLKGRTTLIIAHRLSTIKNA 530 (567)
T ss_pred CcccccceecCCCccCCHHHHHHHHHHHHHhcCCCEEEEeccccccCHHhHHHHHHHHHHHhcCCEEEEEeccHhHHHhC
Confidence 99999999999999999999999999999999999999999999999999999999999888889999999999999999
Q ss_pred CEEEEEeCCEEEEecCchhhhhcCchhHHHHHhhh
Q 001411 409 DTIMVLKNGQVVESGTHVDLISKGGEYAALVNLQS 443 (1082)
Q Consensus 409 d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~ 443 (1082)
|+|+||++|+|++.|+|+||++++|.|++++..+.
T Consensus 531 D~IiVl~~G~i~e~G~h~eLl~~~g~y~~l~~~~~ 565 (567)
T COG1132 531 DRIIVLDNGRIVERGTHEELLAKGGLYARLYQAQG 565 (567)
T ss_pred CEEEEEECCEEEEecCHHHHHHcCCHHHHHHHHhh
Confidence 99999999999999999999999999999998654
|
|
| >TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-73 Score=703.16 Aligned_cols=428 Identities=29% Similarity=0.396 Sum_probs=389.4
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHH
Q 001411 7 LRYLSQFFVGFAVGFTSVWQLTLLTLAVVPLIAVAGGAYTITMSTLSEKGEAAYGEAGKVAEEIISQVRAVYAFVGEAKA 86 (1082)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~ 86 (1082)
+..+..+++.++++++++|.+++++++++|+++++..++.+..++..++.++..++..+.+.|.++|+++||++|.|+.+
T Consensus 257 ~~~~~~~~~~~~~l~~~~~~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~ 336 (686)
T TIGR03797 257 LLSGIFALLNLGLMFYYSWKLALVAVALALVAIAVTLVLGLLQVRKERRLLELSGKISGLTVQLINGISKLRVAGAENRA 336 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhcccHHH
Confidence 33444455667778899999999999999998888888999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001411 87 IESYSHSLKEALKQGKKSGVAKGIGVGLTYGLLFCAWALLLWYAGILVRHGDTNGGKAFTTIINVIFSGFALGQAAPNLA 166 (1082)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~l~~g~~~~~~~~~~~~~~~l~~~~~~~~ 166 (1082)
.++|.+...+..+...+......+...+..++..+..++++++|++++.+|.+|+|.++++.........|+..+...+.
T Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~il~~g~~lv~~g~ltiG~lva~~~l~~~~~~pl~~l~~~~~ 416 (686)
T TIGR03797 337 FARWAKLFSRQRKLELSAQRIENLLTVFNAVLPVLTSAALFAAAISLLGGAGLSLGSFLAFNTAFGSFSGAVTQLSNTLI 416 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999888888888877777777778888889999999999999999988887766777788999999999
Q ss_pred HHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCCCCcEEEEEEEEECCCCCCccccceeEEEeCCCEEEEEcCCCCcH
Q 001411 167 AIAKGKAAAANIISIIKENSHSSERPGDDGITLPKLAGQIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGK 246 (1082)
Q Consensus 167 ~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGK 246 (1082)
.+++++.+.+|+.++++.+++.+ . .. .......+.|+++||+|+|++.++++|+|+||+|+|||++||+|+|||||
T Consensus 417 ~~~~~~~~~~ri~~~l~~~~e~~-~--~~-~~~~~~~~~I~~~nvsf~Y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGK 492 (686)
T TIGR03797 417 SILAVIPLWERAKPILEALPEVD-E--AK-TDPGKLSGAIEVDRVTFRYRPDGPLILDDVSLQIEPGEFVAIVGPSGSGK 492 (686)
T ss_pred HHHHHHHHHHHHHHHhcCCcccc-c--Cc-CCCCCCCceEEEEEEEEEcCCCCccceeeeEEEECCCCEEEEECCCCCCH
Confidence 99999999999999997654422 1 11 11122346799999999997555569999999999999999999999999
Q ss_pred HHHHHHHHhCCCCCCcEEEECCeeCCCCCHHHHhhhceEEccCCCcChhcHHHHHhcCCCCCCHHHHHHHHHHhchHHHH
Q 001411 247 STIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNILLGKEDASMDRVIEAAKAANAHSFV 326 (1082)
Q Consensus 247 STll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i 326 (1082)
|||+|+|+|+|+|++|+|.+||+|+++++++++|++||||||+|++|++||+|||.+++| .++++++++|+.+++++++
T Consensus 493 STLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTI~eNi~~~~~-~~~e~i~~al~~a~l~~~i 571 (686)
T TIGR03797 493 STLLRLLLGFETPESGSVFYDGQDLAGLDVQAVRRQLGVVLQNGRLMSGSIFENIAGGAP-LTLDEAWEAARMAGLAEDI 571 (686)
T ss_pred HHHHHHHhCCCCCCCCEEEECCEEcCcCCHHHHHhccEEEccCCccCcccHHHHHhcCCC-CCHHHHHHHHHHcCcHHHH
Confidence 999999999999999999999999999999999999999999999999999999999988 8899999999999999999
Q ss_pred hcCCCCccccccCCCCCCChHHHHHHHHHHhcccCCCeeEEeCcccCCCHHHHHHHHHHHHHHcCCCeEEEEccCccccc
Q 001411 327 EGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVR 406 (1082)
Q Consensus 327 ~~lp~g~~t~~g~~g~~LSgGqkqri~lARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~vtH~~~~~~ 406 (1082)
+++|+|+||.+||+|.+|||||||||+|||||+++|+|||||||||+||+++|+.+.+.|+++ ++|+|+||||++.++
T Consensus 572 ~~lp~G~dt~ige~G~~LSGGQrQRialARAll~~p~iLiLDEpTS~LD~~te~~i~~~L~~~--~~T~IiItHr~~~i~ 649 (686)
T TIGR03797 572 RAMPMGMHTVISEGGGTLSGGQRQRLLIARALVRKPRILLFDEATSALDNRTQAIVSESLERL--KVTRIVIAHRLSTIR 649 (686)
T ss_pred HhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHh--CCeEEEEecChHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999886 589999999999999
Q ss_pred cCCEEEEEeCCEEEEecCchhhhhcCchhHHHHHh
Q 001411 407 DVDTIMVLKNGQVVESGTHVDLISKGGEYAALVNL 441 (1082)
Q Consensus 407 ~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~ 441 (1082)
.||+|++|++|++++.|+|+|++++++.|++++..
T Consensus 650 ~~D~Iivl~~G~iv~~G~~~~Ll~~~~~y~~l~~~ 684 (686)
T TIGR03797 650 NADRIYVLDAGRVVQQGTYDELMAREGLFAQLARR 684 (686)
T ss_pred cCCEEEEEECCEEEEECCHHHHHhCCcHHHHHHHh
Confidence 99999999999999999999999999999998864
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif |
| >PRK09700 D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-73 Score=687.02 Aligned_cols=459 Identities=21% Similarity=0.385 Sum_probs=350.5
Q ss_pred cEEEEEEEEECCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHHhCCCCCCcEEEECCeeCCCCCHHH-Hhhhc
Q 001411 205 QIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKW-LREQM 283 (1082)
Q Consensus 205 ~i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~-~~~~i 283 (1082)
.++++|++++|++ ..+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+... .++.+
T Consensus 5 ~l~~~~l~~~~~~--~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i 82 (510)
T PRK09700 5 YISMAGIGKSFGP--VHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAAQLGI 82 (510)
T ss_pred eEEEeeeEEEcCC--eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCCccEEEECCEECCCCCHHHHHHCCe
Confidence 4899999999974 34999999999999999999999999999999999999999999999999998776554 34579
Q ss_pred eEEccCCCcChh-cHHHHHhcCCCCC---------CHHHHHHHHHHhchHHHHhcCCCCccccccCCCCCCChHHHHHHH
Q 001411 284 GLVSQEPALFAT-SIANNILLGKEDA---------SMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIA 353 (1082)
Q Consensus 284 ~~v~Q~~~l~~~-ti~~ni~~g~~~~---------~~~~~~~~~~~~~~~~~i~~lp~g~~t~~g~~g~~LSgGqkqri~ 353 (1082)
+||+|++.+++. |++||+.++.... +.++..+ .+.+.++.+ |+.........+||||||||++
T Consensus 83 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~--gl~~~~~~~~~~LSgG~~qrv~ 155 (510)
T PRK09700 83 GIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRV-----RAAMMLLRV--GLKVDLDEKVANLSISHKQMLE 155 (510)
T ss_pred EEEeecccccCCCcHHHHhhhccccccccccccccCHHHHHH-----HHHHHHHHc--CCCCCcccchhhCCHHHHHHHH
Confidence 999999988876 9999998764210 1111111 112223333 4433445556789999999999
Q ss_pred HHHhcccCCCeeEEeCcccCCCHHHHHHHHHHHHHHc-CCCeEEEEccCcccccc-CCEEEEEeCCEEEEecCchhhhhc
Q 001411 354 IARAVLRNPKILLLDEATSALDAESELIVQRALEKIM-SNRTTIVVAHRLSTVRD-VDTIMVLKNGQVVESGTHVDLISK 431 (1082)
Q Consensus 354 lARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 431 (1082)
|||||+.+|++|||||||++||+.+...+.+.|+++. +++|+|+|||+++.+.. ||+|++|++|+++..|+++++...
T Consensus 156 ia~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 235 (510)
T PRK09700 156 IAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKLAEIRRICDRYTVMKDGSSVCSGMVSDVSND 235 (510)
T ss_pred HHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEeeecchhhCCHH
Confidence 9999999999999999999999999999999999875 47899999999999864 899999999999887765443210
Q ss_pred CchhHHHHHhhhccccCCCCcccCCCCCCCCCCCCCCCCcccchhhhhhhhhhhccCCCCCCCchhHHHHHHHhcchhHH
Q 001411 432 GGEYAALVNLQSSEHLSNPSSICYSGSSRYSSFRDFPSSRRYDVEFESSKRRELQSSDQSFAPSPSIWELLKLNAAEWPY 511 (1082)
Q Consensus 432 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 511 (1082)
+...
T Consensus 236 -----~~~~----------------------------------------------------------------------- 239 (510)
T PRK09700 236 -----DIVR----------------------------------------------------------------------- 239 (510)
T ss_pred -----HHHH-----------------------------------------------------------------------
Confidence 0000
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCchhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001411 512 AVLGSVGAILAGMEAPLFALGITHILTAFYSPHDSQIKRVVDQVALIFVGLAVVTIPVYLLQHYFYTLMGEHLTARVRLS 591 (1082)
Q Consensus 512 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 591 (1082)
.
T Consensus 240 ---------------------------~---------------------------------------------------- 240 (510)
T PRK09700 240 ---------------------------L---------------------------------------------------- 240 (510)
T ss_pred ---------------------------H----------------------------------------------------
Confidence 0
Q ss_pred HHHHHHhCCCccccccCCChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001411 592 MFSAILSNEIGWFDLDENNTGLLISTLAADATLVRSALADRLSIIVQNVALTVTAFVIAFILSWRLAAVVAASLPLLIGA 671 (1082)
Q Consensus 592 l~~~~l~~~~~ffd~~~~~~G~il~r~s~D~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~p~~~~~ 671 (1082)
+ +.... .
T Consensus 241 ----~-------~~~~~--~------------------------------------------------------------ 247 (510)
T PRK09700 241 ----M-------VGREL--Q------------------------------------------------------------ 247 (510)
T ss_pred ----h-------cCCCc--c------------------------------------------------------------
Confidence 0 00000 0
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHccHHHHHHcCcHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001411 672 FVAEQLFLKGFGGDYNRAYSRATSVAREAIANIRTVAAYGIEKRISIQFASELSQPNKQALLRGHISGFGYGVSQLLSLC 751 (1082)
Q Consensus 672 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~tIra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 751 (1082)
.
T Consensus 248 ---------------------------------------------------------~---------------------- 248 (510)
T PRK09700 248 ---------------------------------------------------------N---------------------- 248 (510)
T ss_pred ---------------------------------------------------------c----------------------
Confidence 0
Q ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCCCCCcccccc
Q 001411 752 SYALGLWYASVLIKQKGSNFGDIMKSFMVLIITALAVAETLALAPDIVKGSQALGPVFGILYRKTAIQPDDPASKEVTEI 831 (1082)
Q Consensus 752 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~~~~~~~~~~~~~~~~~~~~~ 831 (1082)
+ .....+. +..+. .
T Consensus 249 -------------------------------------------------------~---~~~~~~~--~~~~~------~ 262 (510)
T PRK09700 249 -------------------------------------------------------R---FNAMKEN--VSNLA------H 262 (510)
T ss_pred -------------------------------------------------------c---ccccccc--cccCC------C
Confidence 0 0000000 00000 0
Q ss_pred cccEEEEeEEEECCCCCCcccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCccCCCCCH-HHHh
Q 001411 832 KGNIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNL-RSLR 910 (1082)
Q Consensus 832 ~g~I~~~~Vs~~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~-~~lR 910 (1082)
...|+++|++++|. .+|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.++|.++...+. +.+|
T Consensus 263 ~~~l~~~~l~~~~~-----~~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~ 337 (510)
T PRK09700 263 ETVFEVRNVTSRDR-----KKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRSPLDAVK 337 (510)
T ss_pred CcEEEEeCccccCC-----CcccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCEECCCCCHHHHHH
Confidence 11499999998763 38999999999999999999999999999999999999999999999999876544 4578
Q ss_pred cceEEEcccC---cccc-ccHHHHhccCCCC-----------CCHHHHHHHHHHhcHHHHHhhCccccc-ccccCCCCCC
Q 001411 911 RKIGLVQQEP---ALFS-TTIYENIKYGNED-----------ASEIELMKATKAANAHGFISRMPEGYQ-SHVGDRGVQL 974 (1082)
Q Consensus 911 ~~i~~VpQdp---~Lf~-gTIreNl~~~~~~-----------~~d~ei~~al~~a~l~~~i~~lp~gld-t~v~e~G~~L 974 (1082)
++++||||++ .+|+ -|+++|+.++... ....+. ...+.+.++.+ |+. .........|
T Consensus 338 ~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~~--~l~~~~~~~~~~~L 410 (510)
T PRK09700 338 KGMAYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDE-----QRTAENQRELL--ALKCHSVNQNITEL 410 (510)
T ss_pred CCcEEccCccccCCCcCCCcHHHHhccccccccccccccccccChHHH-----HHHHHHHHHhc--CCCCCCccCccccC
Confidence 8999999984 5775 4999999864210 011110 11122333333 232 1233344569
Q ss_pred ChhHHHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEecCchhhhc-cCEEEEEeCCEEEEe
Q 001411 975 SGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLM-EGRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEI 1052 (1082)
Q Consensus 975 SgGQrQrlaLARAlL~~~~ILlLDEaTS~LD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~ 1052 (1082)
|||||||++|||||+++|+|||||||||+||+.+.+.+.+.|++.. ++.|||+|||+++.+.. ||+|++|++|++++.
T Consensus 411 SgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~ 490 (510)
T PRK09700 411 SGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADDGKVILMVSSELPEIITVCDRIAVFCEGRLTQI 490 (510)
T ss_pred ChHHHHHHHHHHHHhcCCCEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhhCCEEEEEECCEEEEE
Confidence 9999999999999999999999999999999999999999999864 47899999999998865 999999999999998
Q ss_pred cChHH
Q 001411 1053 GSHEQ 1057 (1082)
Q Consensus 1053 G~~~e 1057 (1082)
+++.+
T Consensus 491 ~~~~~ 495 (510)
T PRK09700 491 LTNRD 495 (510)
T ss_pred ecCcc
Confidence 87633
|
|
| >TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-72 Score=702.51 Aligned_cols=434 Identities=29% Similarity=0.388 Sum_probs=392.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcch
Q 001411 4 GHALRYLSQFFVGFAVGFTSVWQLTLLTLAVVPLIAVAGGAYTITMSTLSEKGEAAYGEAGKVAEEIISQVRAVYAFVGE 83 (1082)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e 83 (1082)
...+..+..+++.++++++++|.++++.++++|+++++..++.+..++..++.++..++..+.+.|.++|+++||++|+|
T Consensus 272 ~~~~~~~~~~~~~~~~l~~~~~~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e 351 (710)
T TIGR03796 272 ATTALDAVMLVFYALLMLLYDPVLTLIGIAFAAINVLALQLVSRRRVDANRRLQQDAGKLTGVAISGLQSIETLKASGLE 351 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHccCC
Confidence 34556667777778888999999999999999999988899999999988899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHH
Q 001411 84 AKAIESYSHSLKEALKQGKKSGVAKGIGVGLTYGLLFCAWALLLWYAGILVRHGDTNGGKAFTTIINVIFSGFALGQAAP 163 (1082)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~l~~g~~~~~~~~~~~~~~~l~~~~~ 163 (1082)
+.+.++|.+...+..+...+..........+..++..+..++++++|++++.+|.+|+|.++++.........|+..+..
T Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~il~~g~~~v~~g~lt~G~lva~~~l~~~~~~p~~~l~~ 431 (710)
T TIGR03796 352 SDFFSRWAGYQAKLLNAQQELGVLTQILGVLPTLLTSLNSALILVVGGLRVMEGQLTIGMLVAFQSLMSSFLEPVNNLVG 431 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999888888888887777777777778888899999999999999999988877777777788999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCCCCCCCC---CCCCCC-CCCCCcEEEEEEEEECCCCCCccccceeEEEeCCCEEEEE
Q 001411 164 NLAAIAKGKAAAANIISIIKENSHSSERPG---DDGITL-PKLAGQIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFV 239 (1082)
Q Consensus 164 ~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~---~~~~~~-~~~~~~i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~iv 239 (1082)
.+..++++..+++|+.++++.+++.+.... ...... +...+.|+++||+|+|++.++++|+|+||+|+|||+++||
T Consensus 432 ~~~~~~~~~~~~~ri~~il~~~~e~~~~~~~~~~~~~~~~~~~~~~I~~~~vsf~y~~~~~~vL~~isl~i~~Ge~vaIv 511 (710)
T TIGR03796 432 FGGTLQELEGDLNRLDDVLRNPVDPLLEEEEAPAAGSEPSPRLSGYVELRNITFGYSPLEPPLIENFSLTLQPGQRVALV 511 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCccccccccccccccccCCCCCCeEEEEEEEEecCCCCCCcccceeEEEcCCCEEEEE
Confidence 999999999999999999976554321110 000111 2234679999999999865556999999999999999999
Q ss_pred cCCCCcHHHHHHHHHhCCCCCCcEEEECCeeCCCCCHHHHhhhceEEccCCCcChhcHHHHHhcCCCCCCHHHHHHHHHH
Q 001411 240 GPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNILLGKEDASMDRVIEAAKA 319 (1082)
Q Consensus 240 G~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ti~~ni~~g~~~~~~~~~~~~~~~ 319 (1082)
||||||||||+++|+|+|+|++|+|.+||.|+++++.+++|++|+||||+|++|++||+|||.++.|+.++++++++|+.
T Consensus 512 G~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTi~eNi~l~~~~~~~~~i~~al~~ 591 (710)
T TIGR03796 512 GGSGSGKSTIAKLVAGLYQPWSGEILFDGIPREEIPREVLANSVAMVDQDIFLFEGTVRDNLTLWDPTIPDADLVRACKD 591 (710)
T ss_pred CCCCCCHHHHHHHHhcCCCCCCcEEEECCEeHHHCCHHHHHhheeEEecCChhhhccHHHHhhCCCCCCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999888899999999999
Q ss_pred hchHHHHhcCCCCccccccCCCCCCChHHHHHHHHHHhcccCCCeeEEeCcccCCCHHHHHHHHHHHHHHcCCCeEEEEc
Q 001411 320 ANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVA 399 (1082)
Q Consensus 320 ~~~~~~i~~lp~g~~t~~g~~g~~LSgGqkqri~lARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~vt 399 (1082)
+++++++.++|+|++|.+||+|.+|||||||||+||||++++|+|+|||||||+||+++|+.+.+.|++ .++|+|+||
T Consensus 592 ~~l~~~i~~lp~gl~t~i~e~G~~LSGGQrQRiaLARall~~p~iliLDEptS~LD~~te~~i~~~l~~--~~~T~Iiit 669 (710)
T TIGR03796 592 AAIHDVITSRPGGYDAELAEGGANLSGGQRQRLEIARALVRNPSILILDEATSALDPETEKIIDDNLRR--RGCTCIIVA 669 (710)
T ss_pred hCCHHHHHhCcCcccceeccCCCCCCHHHHHHHHHHHHHhhCCCEEEEECccccCCHHHHHHHHHHHHh--cCCEEEEEe
Confidence 999999999999999999999999999999999999999999999999999999999999999999986 489999999
Q ss_pred cCccccccCCEEEEEeCCEEEEecCchhhhhcCchhHHHH
Q 001411 400 HRLSTVRDVDTIMVLKNGQVVESGTHVDLISKGGEYAALV 439 (1082)
Q Consensus 400 H~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~ 439 (1082)
||++.++.||+|++|++|++++.|+|+|++++++.|++++
T Consensus 670 Hrl~~i~~~D~Iivl~~G~i~~~G~~~~Ll~~~~~y~~l~ 709 (710)
T TIGR03796 670 HRLSTIRDCDEIIVLERGKVVQRGTHEELWAVGGAYARLI 709 (710)
T ss_pred cCHHHHHhCCEEEEEeCCEEEEecCHHHHHHcCCcHHHHh
Confidence 9999999999999999999999999999999999998876
|
This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin. |
| >TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-72 Score=696.77 Aligned_cols=430 Identities=39% Similarity=0.580 Sum_probs=386.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcch
Q 001411 4 GHALRYLSQFFVGFAVGFTSVWQLTLLTLAVVPLIAVAGGAYTITMSTLSEKGEAAYGEAGKVAEEIISQVRAVYAFVGE 83 (1082)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e 83 (1082)
..++..+..+++.++++++++|.++++.++.+|+++++..++.++.++..++.++..++..+.+.|.++|+++||.|++|
T Consensus 280 ~~~l~~~~~~i~~~~~l~~~s~~l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~Ik~~~~e 359 (711)
T TIGR00958 280 NVLLRNLVMLLGLLGFMLWLSPRLTMVTLINLPLVFLAEKVFGKRYQLLSEELQEAVAKANQVAEEALSGMRTVRSFAAE 359 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhccc
Confidence 34566677777788889999999999999999999888899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHH
Q 001411 84 AKAIESYSHSLKEALKQGKKSGVAKGIGVGLTYGLLFCAWALLLWYAGILVRHGDTNGGKAFTTIINVIFSGFALGQAAP 163 (1082)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~l~~g~~~~~~~~~~~~~~~l~~~~~ 163 (1082)
+.+.++|.+..++..+...+.....+....+..++..+..++++++|++++.+|.+|+|.+++++.+......|+..+..
T Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~g~~lv~~g~it~G~lva~~~~~~~l~~~l~~l~~ 439 (711)
T TIGR00958 360 EGEASRFKEALEETLQLNKRKALAYAGYLWTTSVLGMLIQVLVLYYGGQLVLTGKVSSGNLVSFLLYQEQLGEAVRVLSY 439 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999888887777766666655555666666777788999999999999999998888777777889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCCCCcEEEEEEEEECCCCC-CccccceeEEEeCCCEEEEEcCC
Q 001411 164 NLAAIAKGKAAAANIISIIKENSHSSERPGDDGITLPKLAGQIEFSEVCFAYPSRP-HMVFENLNFSVDAGKTFAFVGPS 242 (1082)
Q Consensus 164 ~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~-~~~l~~i~l~i~~g~~~~ivG~s 242 (1082)
.+..+.++..+.+|+.++++.+++.++. ....+.+..+.|+++||+|+||+++ +++|+|+||+|+|||+++|||||
T Consensus 440 ~~~~~~~~~~a~~ri~~~l~~~~~~~~~---~~~~~~~~~~~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~S 516 (711)
T TIGR00958 440 VYSGMMQAVGASEKVFEYLDRKPNIPLT---GTLAPLNLEGLIEFQDVSFSYPNRPDVPVLKGLTFTLHPGEVVALVGPS 516 (711)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCCCCC---CCCCCCCCCCeEEEEEEEEECCCCCCCccccCceEEEcCCCEEEEECCC
Confidence 9999999999999999999765443211 1111122346799999999998643 46999999999999999999999
Q ss_pred CCcHHHHHHHHHhCCCCCCcEEEECCeeCCCCCHHHHhhhceEEccCCCcChhcHHHHHhcCCCCCCHHHHHHHHHHhch
Q 001411 243 GSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNILLGKEDASMDRVIEAAKAANA 322 (1082)
Q Consensus 243 GsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ti~~ni~~g~~~~~~~~~~~~~~~~~~ 322 (1082)
|||||||+++|+|+|+|++|+|.+||+|+++++.+++|++|+||+|+|++|++||+|||.+|.++.+++++.++++.+++
T Consensus 517 GsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lF~gTIreNI~~g~~~~~~e~i~~al~~a~l 596 (711)
T TIGR00958 517 GSGKSTVAALLQNLYQPTGGQVLLDGVPLVQYDHHYLHRQVALVGQEPVLFSGSVRENIAYGLTDTPDEEIMAAAKAANA 596 (711)
T ss_pred CCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHhhceEEecCccccccCHHHHHhcCCCCCCHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999988889999999999999
Q ss_pred HHHHhcCCCCccccccCCCCCCChHHHHHHHHHHhcccCCCeeEEeCcccCCCHHHHHHHHHHHHHHcCCCeEEEEccCc
Q 001411 323 HSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRL 402 (1082)
Q Consensus 323 ~~~i~~lp~g~~t~~g~~g~~LSgGqkqri~lARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~vtH~~ 402 (1082)
+++++++|+|+||.+||+|.+||||||||++||||++++|+|+|||||||+||+++++.+.+ . ...+++|+|+||||+
T Consensus 597 ~~~i~~lp~GldT~ige~G~~LSGGQkQRlalARALl~~p~ILILDEpTSaLD~~te~~i~~-~-~~~~~~TvIiItHrl 674 (711)
T TIGR00958 597 HDFIMEFPNGYDTEVGEKGSQLSGGQKQRIAIARALVRKPRVLILDEATSALDAECEQLLQE-S-RSRASRTVLLIAHRL 674 (711)
T ss_pred HHHHHhCCCccCCcccCCCCcCCHHHHHHHHHHHHHhcCCCEEEEEccccccCHHHHHHHHH-h-hccCCCeEEEEeccH
Confidence 99999999999999999999999999999999999999999999999999999999999998 3 334689999999999
Q ss_pred cccccCCEEEEEeCCEEEEecCchhhhhcCchhHHH
Q 001411 403 STVRDVDTIMVLKNGQVVESGTHVDLISKGGEYAAL 438 (1082)
Q Consensus 403 ~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~ 438 (1082)
++++.||+|++|++|+|+++|+|+||+++++.|+++
T Consensus 675 ~~i~~aD~IivL~~G~ive~Gt~~eL~~~~~~y~~l 710 (711)
T TIGR00958 675 STVERADQILVLKKGSVVEMGTHKQLMEDQGCYKHL 710 (711)
T ss_pred HHHHhCCEEEEEECCEEEEeeCHHHHHhCCCchHhc
Confidence 999999999999999999999999999998888775
|
|
| >TIGR01194 cyc_pep_trnsptr cyclic peptide transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-71 Score=667.50 Aligned_cols=533 Identities=19% Similarity=0.189 Sum_probs=427.1
Q ss_pred HHHHHHHhc-chhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCchhhHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001411 498 IWELLKLNA-AEWPYAVLGSVGAILAGMEAPLFALGITHILTAFYSPHDSQIKRVVDQVALIFVGLAVVTIPVYLLQHYF 576 (1082)
Q Consensus 498 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 576 (1082)
+++++.+.+ ++++.+.++.+.+++.++.....++.+..++..... . .. .....++++.++..++.++..++
T Consensus 5 ~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~i~~~~~---~--~~---~~~~~~~~~~~~~~~~~~~~~~~ 76 (555)
T TIGR01194 5 IGEILALLRSPFPAITAFSIALGLAGGLAIIALLASINNAIHEENF---L--GQ---GSLFSFGGLCLLALLFRIGADIF 76 (555)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc---c--cc---hHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555556 667766666666655555444444444433321100 0 00 01122444555666778888889
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCccccccCCChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001411 577 YTLMGEHLTARVRLSMFSAILSNEIGWFDLDENNTGLLISTLAADATLVRSALADRLSIIVQNVALTVTAFVIAFILSWR 656 (1082)
Q Consensus 577 ~~~~~~~~~~~l~~~l~~~~l~~~~~ffd~~~~~~G~il~r~s~D~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 656 (1082)
....+.+...++|.++++++++.|+.||+. +++|++++|+++|++.++..+.. +..++..++.+++.++++++++|.
T Consensus 77 ~~~~~~~~~~~lR~~l~~~l~~~~~~~~~~--~~~G~l~srl~~Dv~~i~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~ 153 (555)
T TIGR01194 77 PAYAGMHIIANLRIALCEKILGAPIEEIDR--RGAHNLIPLLTHDIDQINAFLFI-FPPIAIALAIFFFCIAYLAYLSVP 153 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCHHHHHh--cCcchhhHHHhhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhHH
Confidence 999999999999999999999999999985 79999999999999999998864 777788888888888899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHccHHHHHHcCcHH--HHHHHHHHHHhhHHHHHHHH
Q 001411 657 LAAVVAASLPLLIGAFVAEQLFLKGFGGDYNRAYSRATSVAREAIANIRTVAAYGIEK--RISIQFASELSQPNKQALLR 734 (1082)
Q Consensus 657 l~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~tIra~~~~~--~~~~~~~~~~~~~~~~~~~~ 734 (1082)
+++++++.+|+.++...+..+..++...+.++...+..+.+.|.+.|++++|+|+.++ ...+++.+..++..+...+.
T Consensus 154 L~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (555)
T TIGR01194 154 MFAITISAIIIGTAAQLLAFMGGFKFFHAARDEEDAFNEHTHAIAFGAKELKIHGIRRLSFAHGAIQESANNIADLHIIE 233 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHhcCHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 9999988888877776666666666666777778888999999999999999999953 55677777777777766655
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 001411 735 GHISGFGYGVSQLLSLCSYALGLWYASVLIKQKGSNFGDIMKSFMVLIITALAVAETLALAPDIVKGSQALGPVFGILYR 814 (1082)
Q Consensus 735 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~~~~ 814 (1082)
.........+...+..+...+.+|++... +.++.|.++++..+......++..+...+..+..+..+.+|+.++++.
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~t~g~l~a~~~~~~~l~~pi~~l~~~~~~~~~a~~s~~ri~~ll~~ 310 (555)
T TIGR01194 234 ILIFIAAENFGQLLFFLLIGCALFAAAMF---ASIDAAAISAFVLALLYIKGPLEMLVSALPILAQAQIACQRLADFGER 310 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 54444444444444444444444554432 688999999888888888999999999999999999999999999753
Q ss_pred cccCCC--CCCC-Cc----ccccccccEEEEeEEEECCCCC--CcccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHhc
Q 001411 815 KTAIQP--DDPA-SK----EVTEIKGNIELRNVSFKYPVRP--DITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMR 885 (1082)
Q Consensus 815 ~~~~~~--~~~~-~~----~~~~~~g~I~~~~Vs~~Y~~~~--~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~r 885 (1082)
..+.++ +.+. .. ++....+.|+|+||+|+|++.+ ..++|+|+||+|++||++|||||||||||||+++|.|
T Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g 390 (555)
T TIGR01194 311 FNEPEPELELSDADNVLLLAHDKSVDSIELKDVHMNPKAPEGSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCG 390 (555)
T ss_pred hccccccccccccccccccccCCCCceEEEEEEEEEeCCCCCCcCceeccceEEEcCCcEEEEECCCCCCHHHHHHHHhC
Confidence 211111 0010 00 1112346799999999997432 2369999999999999999999999999999999999
Q ss_pred cccCCccEEEECCccCCCCCHHHHhcceEEEcccCccccccHHHHhccCCCCCCHHHHHHHHHHhcHHHHHhhCcccccc
Q 001411 886 FYDPISGTVLIDGYDIRTLNLRSLRRKIGLVQQEPALFSTTIYENIKYGNEDASEIELMKATKAANAHGFISRMPEGYQS 965 (1082)
Q Consensus 886 l~~p~~G~I~idG~di~~i~~~~lR~~i~~VpQdp~Lf~gTIreNl~~~~~~~~d~ei~~al~~a~l~~~i~~lp~gldt 965 (1082)
+|+|++|+|.+||+|+++++.+++|+++++|+|||++|++|+++|+ .+++++++++++++.++++++++++|+||||
T Consensus 391 ~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~ti~~n~---~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t 467 (555)
T TIGR01194 391 LYIPQEGEILLDGAAVSADSRDDYRDLFSAIFADFHLFDDLIGPDE---GEHASLDNAQQYLQRLEIADKVKIEDGGFST 467 (555)
T ss_pred CCCCCCcEEEECCEECCCCCHHHHHhhCcEEccChhhhhhhhhccc---ccchhHHHHHHHHHHcCCchhhcccccccCC
Confidence 9999999999999999999999999999999999999999999996 3567899999999999999999999999999
Q ss_pred cccCCCCCCChhHHHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHH-h-cCCceEEEEecCchhhhccCEEEE
Q 001411 966 HVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDK-L-MEGRTTIMVAHRLSTIRNADKIAV 1043 (1082)
Q Consensus 966 ~v~e~G~~LSgGQrQrlaLARAlL~~~~ILlLDEaTS~LD~~te~~I~~~l~~-~-~~~~TvI~IaHrl~ti~~~DrI~V 1043 (1082)
. .+|||||||||+||||++++|+|||||||||+||++|++.+++.+.+ . .+++|+|+||||++++..||+|+|
T Consensus 468 ~-----~~LSgGq~qRlalaRall~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tiiiisH~~~~~~~~d~i~~ 542 (555)
T TIGR01194 468 T-----TALSTGQQKRLALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLKRQGKTIIIISHDDQYFELADQIIK 542 (555)
T ss_pred c-----ccCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHhCCEEEE
Confidence 5 68999999999999999999999999999999999999999987753 3 368999999999999999999999
Q ss_pred EeCCEEEEe
Q 001411 1044 LQQGKVAEI 1052 (1082)
Q Consensus 1044 l~~G~ive~ 1052 (1082)
|++|+++|.
T Consensus 543 l~~G~i~~~ 551 (555)
T TIGR01194 543 LAAGCIVKD 551 (555)
T ss_pred EECCEEEEe
Confidence 999999974
|
This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake. |
| >TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-73 Score=687.41 Aligned_cols=453 Identities=26% Similarity=0.475 Sum_probs=344.4
Q ss_pred EEEEEEEEECCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHHhCC--CCCCcEEEEC----------------
Q 001411 206 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLY--EPTSGKILLD---------------- 267 (1082)
Q Consensus 206 i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~--~~~~G~i~~~---------------- 267 (1082)
|+++|++++|++ ..+|+|+||++++||+++|+||||||||||+++|+|+. +|++|+|.++
T Consensus 1 l~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~~~~~~~~~~~~~~~~~ 78 (520)
T TIGR03269 1 IEVKNLTKKFDG--KEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYVERPSKV 78 (520)
T ss_pred CEEEEEEEEECC--eEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEecccccccccccccccc
Confidence 478999999964 34999999999999999999999999999999999996 7999999997
Q ss_pred -------CeeCC-------CCC---HHHHhhhceEEccC-CCcChh-cHHHHHhcCCCC--CCH----HHHHHHHHHhch
Q 001411 268 -------GHDLK-------SLQ---LKWLREQMGLVSQE-PALFAT-SIANNILLGKED--ASM----DRVIEAAKAANA 322 (1082)
Q Consensus 268 -------g~~~~-------~~~---~~~~~~~i~~v~Q~-~~l~~~-ti~~ni~~g~~~--~~~----~~~~~~~~~~~~ 322 (1082)
|.++. ..+ ...+|+.++|++|+ +.+|+. |++||+.++... ... +++.++++..
T Consensus 79 g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~-- 156 (520)
T TIGR03269 79 GEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEIGYEGKEAVGRAVDLIEMV-- 156 (520)
T ss_pred ccccccccccccccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHc--
Confidence 32221 111 12456789999998 567764 999999875321 111 2233333333
Q ss_pred HHHHhcCCCCccccccCCCCCCChHHHHHHHHHHhcccCCCeeEEeCcccCCCHHHHHHHHHHHHHHc--CCCeEEEEcc
Q 001411 323 HSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIM--SNRTTIVVAH 400 (1082)
Q Consensus 323 ~~~i~~lp~g~~t~~g~~g~~LSgGqkqri~lARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~--~~~t~i~vtH 400 (1082)
|++........+|||||||||+|||||+.+|++|||||||++||+.+.+.+.+.|+++. .++|||+|||
T Consensus 157 ---------gl~~~~~~~~~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivtH 227 (520)
T TIGR03269 157 ---------QLSHRITHIARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSH 227 (520)
T ss_pred ---------CChhhhhcCcccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeC
Confidence 33333444557899999999999999999999999999999999999999999999874 3789999999
Q ss_pred Cccccc-cCCEEEEEeCCEEEEecCchhhhhcCchhHHHHHhhhccccCCCCcccCCCCCCCCCCCCCCCCcccchhhhh
Q 001411 401 RLSTVR-DVDTIMVLKNGQVVESGTHVDLISKGGEYAALVNLQSSEHLSNPSSICYSGSSRYSSFRDFPSSRRYDVEFES 479 (1082)
Q Consensus 401 ~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 479 (1082)
+++.+. .||+|++|++|+++..|+++++... +
T Consensus 228 d~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~---~-------------------------------------------- 260 (520)
T TIGR03269 228 WPEVIEDLSDKAIWLENGEIKEEGTPDEVVAV---F-------------------------------------------- 260 (520)
T ss_pred CHHHHHHhcCEEEEEeCCEEeeecCHHHHHHH---H--------------------------------------------
Confidence 999986 4899999999999876643222100 0
Q ss_pred hhhhhhccCCCCCCCchhHHHHHHHhcchhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCchhhHhHHHHHHHHH
Q 001411 480 SKRRELQSSDQSFAPSPSIWELLKLNAAEWPYAVLGSVGAILAGMEAPLFALGITHILTAFYSPHDSQIKRVVDQVALIF 559 (1082)
Q Consensus 480 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 559 (1082)
T Consensus 261 -------------------------------------------------------------------------------- 260 (520)
T TIGR03269 261 -------------------------------------------------------------------------------- 260 (520)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccccccCCChhHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 001411 560 VGLAVVTIPVYLLQHYFYTLMGEHLTARVRLSMFSAILSNEIGWFDLDENNTGLLISTLAADATLVRSALADRLSIIVQN 639 (1082)
Q Consensus 560 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~l~~~~~ffd~~~~~~G~il~r~s~D~~~i~~~~~~~l~~~~~~ 639 (1082)
...
T Consensus 261 --------------------------------------------~~~--------------------------------- 263 (520)
T TIGR03269 261 --------------------------------------------MEG--------------------------------- 263 (520)
T ss_pred --------------------------------------------Hhh---------------------------------
Confidence 000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHccHHHHHHcCcHHHHHHH
Q 001411 640 VALTVTAFVIAFILSWRLAAVVAASLPLLIGAFVAEQLFLKGFGGDYNRAYSRATSVAREAIANIRTVAAYGIEKRISIQ 719 (1082)
Q Consensus 640 ~~~~~~~~~~~~~~~~~l~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~tIra~~~~~~~~~~ 719 (1082)
+ .
T Consensus 264 ---------------~------------------------~--------------------------------------- 265 (520)
T TIGR03269 264 ---------------V------------------------S--------------------------------------- 265 (520)
T ss_pred ---------------c------------------------h---------------------------------------
Confidence 0 0
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001411 720 FASELSQPNKQALLRGHISGFGYGVSQLLSLCSYALGLWYASVLIKQKGSNFGDIMKSFMVLIITALAVAETLALAPDIV 799 (1082)
Q Consensus 720 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 (1082)
T Consensus 266 -------------------------------------------------------------------------------- 265 (520)
T TIGR03269 266 -------------------------------------------------------------------------------- 265 (520)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHhhcccccCCCCCCCCcccccccccEEEEeEEEECCC--CCCcccccceeEEeeCCcEEEEEcCCCCCHH
Q 001411 800 KGSQALGPVFGILYRKTAIQPDDPASKEVTEIKGNIELRNVSFKYPV--RPDITIFENLNLKVSAGRSLAVVGQSGSGKS 877 (1082)
Q Consensus 800 ~~~~a~~ri~~~~~~~~~~~~~~~~~~~~~~~~g~I~~~~Vs~~Y~~--~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKS 877 (1082)
+. .. +. +. +. ....|+++||+++|+. +...++|+|+||+|++||++||+|+||||||
T Consensus 266 -------~~----~~-~~--~~-~~------~~~~l~~~~l~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~NGsGKS 324 (520)
T TIGR03269 266 -------EV----EK-EC--EV-EV------GEPIIKVRNVSKRYISVDRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKT 324 (520)
T ss_pred -------hh----cc-cc--cc-CC------CCceEEEeccEEEeccCCCCCceEEeeEEEEEcCCCEEEEECCCCCCHH
Confidence 00 00 00 00 00 0124999999999952 1124699999999999999999999999999
Q ss_pred HHHHHHhccccCCccEEEEC-Cc---cCCCCC---HHHHhcceEEEcccCcccc-ccHHHHhccCCC-CCC----HHHHH
Q 001411 878 TVISLVMRFYDPISGTVLID-GY---DIRTLN---LRSLRRKIGLVQQEPALFS-TTIYENIKYGNE-DAS----EIELM 944 (1082)
Q Consensus 878 TL~~lL~rl~~p~~G~I~id-G~---di~~i~---~~~lR~~i~~VpQdp~Lf~-gTIreNl~~~~~-~~~----d~ei~ 944 (1082)
||+++|.|+++|++|+|.++ |. ++...+ ...+|++++||||++.+|+ .|+++|+.++.. ... ++++.
T Consensus 325 TLl~~l~Gl~~p~~G~i~~~~g~~~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~ 404 (520)
T TIGR03269 325 TLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPGPDGRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGLELPDELARMKAV 404 (520)
T ss_pred HHHHHHhCCCCCCCeEEEEecCCccccccccchhhHHHHhhhEEEEccCcccCCCCcHHHHHHHHHHcCCCHHHHHHHHH
Confidence 99999999999999999996 64 344333 2356788999999998887 499999975311 111 12233
Q ss_pred HHHHHhcHHHHHhhCcccccccccCCCCCCChhHHHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHhc-C-C
Q 001411 945 KATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLM-E-G 1022 (1082)
Q Consensus 945 ~al~~a~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlaLARAlL~~~~ILlLDEaTS~LD~~te~~I~~~l~~~~-~-~ 1022 (1082)
++++..++.+. ..+.........||||||||++|||||+.+|+||||||||++||+.+.+.+.+.|++.. + +
T Consensus 405 ~~l~~~~l~~~------~~~~~~~~~~~~LSgGq~qrv~laral~~~p~lLllDEPt~~LD~~~~~~l~~~l~~l~~~~g 478 (520)
T TIGR03269 405 ITLKMVGFDEE------KAEEILDKYPDELSEGERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEME 478 (520)
T ss_pred HHHHhCCCCCc------cchhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcC
Confidence 44444443210 00001233446799999999999999999999999999999999999999999999874 2 7
Q ss_pred ceEEEEecCchhhhc-cCEEEEEeCCEEEEecChHHHhh
Q 001411 1023 RTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGSHEQLLR 1060 (1082)
Q Consensus 1023 ~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~G~~~eLl~ 1060 (1082)
.|||+|||+++.+.. ||+|++|++|++++.|+++++.+
T Consensus 479 ~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 517 (520)
T TIGR03269 479 QTFIIVSHDMDFVLDVCDRAALMRDGKIVKIGDPEEIVE 517 (520)
T ss_pred cEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 899999999999975 99999999999999999998865
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. |
| >PRK10762 D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-73 Score=679.51 Aligned_cols=454 Identities=23% Similarity=0.391 Sum_probs=350.2
Q ss_pred cEEEEEEEEECCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHHhCCCCCCcEEEECCeeCCCCCHHH-Hhhhc
Q 001411 205 QIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKW-LREQM 283 (1082)
Q Consensus 205 ~i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~-~~~~i 283 (1082)
-|+++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+... .++.+
T Consensus 4 ~i~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i 81 (501)
T PRK10762 4 LLQLKGIDKAFPG--VKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQEAGI 81 (501)
T ss_pred eEEEeeeEEEeCC--eEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCE
Confidence 4899999999974 34999999999999999999999999999999999999999999999999987655443 35679
Q ss_pred eEEccCCCcChh-cHHHHHhcCCCC------CCHHHHHHHHHHhchHHHHhcCCCCccccccCCCCCCChHHHHHHHHHH
Q 001411 284 GLVSQEPALFAT-SIANNILLGKED------ASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIAR 356 (1082)
Q Consensus 284 ~~v~Q~~~l~~~-ti~~ni~~g~~~------~~~~~~~~~~~~~~~~~~i~~lp~g~~t~~g~~g~~LSgGqkqri~lAR 356 (1082)
+|++|++.+++. |++||+.++... .+.++..+. +.+.++.+ |+.........+||||||||++|||
T Consensus 82 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~-----~~~~l~~~--~l~~~~~~~~~~LSgG~~qrv~la~ 154 (501)
T PRK10762 82 GIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAE-----ADKLLARL--NLRFSSDKLVGELSIGEQQMVEIAK 154 (501)
T ss_pred EEEEcchhccCCCcHHHHhhhccccccccCccCHHHHHHH-----HHHHHHHc--CCCCCccCchhhCCHHHHHHHHHHH
Confidence 999999988865 999999986431 111111111 12233333 4433444556789999999999999
Q ss_pred hcccCCCeeEEeCcccCCCHHHHHHHHHHHHHHc-CCCeEEEEccCcccccc-CCEEEEEeCCEEEEecCchhhhhcCch
Q 001411 357 AVLRNPKILLLDEATSALDAESELIVQRALEKIM-SNRTTIVVAHRLSTVRD-VDTIMVLKNGQVVESGTHVDLISKGGE 434 (1082)
Q Consensus 357 al~~~~~illlDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~~~ 434 (1082)
||+.+|++|||||||++||+.+.+.+.+.|.++. .++|+|+|||+++.+.. ||+|++|++|++++.|+.+++...
T Consensus 155 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvii~sHd~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~--- 231 (501)
T PRK10762 155 VLSFESKVIIMDEPTDALTDTETESLFRVIRELKSQGRGIVYISHRLKEIFEICDDVTVFRDGQFIAEREVADLTED--- 231 (501)
T ss_pred HHhcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEecCcCcCCHH---
Confidence 9999999999999999999999999999998874 46899999999998864 899999999999887654332100
Q ss_pred hHHHHHhhhccccCCCCcccCCCCCCCCCCCCCCCCcccchhhhhhhhhhhccCCCCCCCchhHHHHHHHhcchhHHHHH
Q 001411 435 YAALVNLQSSEHLSNPSSICYSGSSRYSSFRDFPSSRRYDVEFESSKRRELQSSDQSFAPSPSIWELLKLNAAEWPYAVL 514 (1082)
Q Consensus 435 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 514 (1082)
.+.
T Consensus 232 --~~~--------------------------------------------------------------------------- 234 (501)
T PRK10762 232 --SLI--------------------------------------------------------------------------- 234 (501)
T ss_pred --HHH---------------------------------------------------------------------------
Confidence 000
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHhcCCCchhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001411 515 GSVGAILAGMEAPLFALGITHILTAFYSPHDSQIKRVVDQVALIFVGLAVVTIPVYLLQHYFYTLMGEHLTARVRLSMFS 594 (1082)
Q Consensus 515 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 594 (1082)
...
T Consensus 235 -----------------------~~~------------------------------------------------------ 237 (501)
T PRK10762 235 -----------------------EMM------------------------------------------------------ 237 (501)
T ss_pred -----------------------HHh------------------------------------------------------
Confidence 000
Q ss_pred HHHhCCCccccccCCChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001411 595 AILSNEIGWFDLDENNTGLLISTLAADATLVRSALADRLSIIVQNVALTVTAFVIAFILSWRLAAVVAASLPLLIGAFVA 674 (1082)
Q Consensus 595 ~~l~~~~~ffd~~~~~~G~il~r~s~D~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~p~~~~~~~~ 674 (1082)
+...
T Consensus 238 ---------~~~~------------------------------------------------------------------- 241 (501)
T PRK10762 238 ---------VGRK------------------------------------------------------------------- 241 (501)
T ss_pred ---------cCCC-------------------------------------------------------------------
Confidence 0000
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHccHHHHHHcCcHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001411 675 EQLFLKGFGGDYNRAYSRATSVAREAIANIRTVAAYGIEKRISIQFASELSQPNKQALLRGHISGFGYGVSQLLSLCSYA 754 (1082)
Q Consensus 675 ~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~tIra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 754 (1082)
T Consensus 242 -------------------------------------------------------------------------------- 241 (501)
T PRK10762 242 -------------------------------------------------------------------------------- 241 (501)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCCCCCccccccccc
Q 001411 755 LGLWYASVLIKQKGSNFGDIMKSFMVLIITALAVAETLALAPDIVKGSQALGPVFGILYRKTAIQPDDPASKEVTEIKGN 834 (1082)
Q Consensus 755 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~~~~~~~~~~~~~~~~~~~~~~g~ 834 (1082)
. ....+.. +. ++....
T Consensus 242 -----------------------------------------------------~---~~~~~~~-~~-------~~~~~~ 257 (501)
T PRK10762 242 -----------------------------------------------------L---EDQYPRL-DK-------APGEVR 257 (501)
T ss_pred -----------------------------------------------------c---ccccccc-cc-------CCCCcE
Confidence 0 0000000 00 000114
Q ss_pred EEEEeEEEECCCCCCcccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCccCCCCCH-HHHhcce
Q 001411 835 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNL-RSLRRKI 913 (1082)
Q Consensus 835 I~~~~Vs~~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~-~~lR~~i 913 (1082)
|+++|+++ ++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+. +.+|+++
T Consensus 258 l~~~~l~~--------~~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~p~~G~I~~~g~~i~~~~~~~~~~~~i 329 (501)
T PRK10762 258 LKVDNLSG--------PGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSPQDGLANGI 329 (501)
T ss_pred EEEeCccc--------CCcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHHCCC
Confidence 88999983 36999999999999999999999999999999999999999999999999987665 3567889
Q ss_pred EEEcccC---ccc-cccHHHHhccCCCC--------CCHHHHHHHHHHhcHHHHHhhCccccc-ccccCCCCCCChhHHH
Q 001411 914 GLVQQEP---ALF-STTIYENIKYGNED--------ASEIELMKATKAANAHGFISRMPEGYQ-SHVGDRGVQLSGGQKQ 980 (1082)
Q Consensus 914 ~~VpQdp---~Lf-~gTIreNl~~~~~~--------~~d~ei~~al~~a~l~~~i~~lp~gld-t~v~e~G~~LSgGQrQ 980 (1082)
+||||+| .+| ..|+++|+.++... .+..+. ...+.++++.+ |++ .........|||||||
T Consensus 330 ~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~~--~l~~~~~~~~~~~LSgGekq 402 (501)
T PRK10762 330 VYISEDRKRDGLVLGMSVKENMSLTALRYFSRAGGSLKHADE-----QQAVSDFIRLF--NIKTPSMEQAIGLLSGGNQQ 402 (501)
T ss_pred EEecCccccCCCcCCCcHHHHhhhhhhhhhcccccccCHHHH-----HHHHHHHHHhc--CCCCCCccCchhhCCHHHHH
Confidence 9999997 355 46999999863210 111111 11223334433 332 2234455679999999
Q ss_pred HHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEecCchhhhc-cCEEEEEeCCEEEEecChHHH
Q 001411 981 RVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLM-EGRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGSHEQL 1058 (1082)
Q Consensus 981 rlaLARAlL~~~~ILlLDEaTS~LD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~G~~~eL 1058 (1082)
|++|||||+.+|+||||||||++||+.+.+.+.+.|++.. +++|||+|||+++.+.. ||+|++|++|++++.|+++++
T Consensus 403 rv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 482 (501)
T PRK10762 403 KVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKAEGLSIILVSSEMPEVLGMSDRILVMHEGRISGEFTREQA 482 (501)
T ss_pred HHHHHHHHhhCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhhCCEEEEEECCEEEEEeccccC
Confidence 9999999999999999999999999999999999999875 47899999999999865 999999999999999998876
Q ss_pred h
Q 001411 1059 L 1059 (1082)
Q Consensus 1059 l 1059 (1082)
.
T Consensus 483 ~ 483 (501)
T PRK10762 483 T 483 (501)
T ss_pred C
Confidence 4
|
|
| >PRK11176 lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-71 Score=680.97 Aligned_cols=434 Identities=36% Similarity=0.549 Sum_probs=392.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchH
Q 001411 5 HALRYLSQFFVGFAVGFTSVWQLTLLTLAVVPLIAVAGGAYTITMSTLSEKGEAAYGEAGKVAEEIISQVRAVYAFVGEA 84 (1082)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~ 84 (1082)
.++..+..+++.++++++++|.+++++++++|+.+++..++.+++++..++.++..++..+.+.|.++|+++||++|.|+
T Consensus 145 ~~~~~~~~~~~~~~~l~~~~~~l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~ 224 (582)
T PRK11176 145 TVVREGASIIGLFIMMFYYSWQLSLILIVIAPIVSIAIRVVSKRFRNISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQE 224 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHhCcCH
Confidence 45666777777888889999999999999889888888888889888888899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHH
Q 001411 85 KAIESYSHSLKEALKQGKKSGVAKGIGVGLTYGLLFCAWALLLWYAGILVRHGDTNGGKAFTTIINVIFSGFALGQAAPN 164 (1082)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~l~~g~~~~~~~~~~~~~~~l~~~~~~ 164 (1082)
.+.++|++..++..+...+..+.......+..++..+..++++++|++++.+|.+|+|.+.+++.+......|+..+...
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~g~is~g~~~~~~~~~~~~~~pl~~l~~~ 304 (582)
T PRK11176 225 VETKRFDKVSNRMRQQGMKMVSASSISDPIIQLIASLALAFVLYAASFPSVMDTLTAGTITVVFSSMIALMRPLKSLTNV 304 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999988888888777777777777777778889999999999999999877766666667889999999
Q ss_pred HHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCCCCcEEEEEEEEECCCCCCccccceeEEEeCCCEEEEEcCCCC
Q 001411 165 LAAIAKGKAAAANIISIIKENSHSSERPGDDGITLPKLAGQIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGS 244 (1082)
Q Consensus 165 ~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGs 244 (1082)
+..+..++.+.+|+.++++.+++.+ . .. ...++..+.|+++||+|+|+++..++|+|+||+|++||+++|+|+|||
T Consensus 305 ~~~~~~~~~~~~ri~~~~~~~~~~~-~-~~--~~~~~~~~~i~~~~vsf~y~~~~~~il~~i~l~i~~G~~~aIvG~sGs 380 (582)
T PRK11176 305 NAQFQRGMAACQTLFAILDLEQEKD-E-GK--RVIERAKGDIEFRNVTFTYPGKEVPALRNINFKIPAGKTVALVGRSGS 380 (582)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCcCC-C-CC--cCCCCCCCeEEEEEEEEecCCCCCccccCceEEeCCCCEEEEECCCCC
Confidence 9999999999999999997543321 1 11 111223357999999999986555699999999999999999999999
Q ss_pred cHHHHHHHHHhCCCCCCcEEEECCeeCCCCCHHHHhhhceEEccCCCcChhcHHHHHhcCCCC-CCHHHHHHHHHHhchH
Q 001411 245 GKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNILLGKED-ASMDRVIEAAKAANAH 323 (1082)
Q Consensus 245 GKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ti~~ni~~g~~~-~~~~~~~~~~~~~~~~ 323 (1082)
|||||+++|+|+++|++|+|.+||+|+++++.+++|++|+||||+|++|++||+|||.+|.++ .++++++++|+.++++
T Consensus 381 GKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~al~~~~l~ 460 (582)
T PRK11176 381 GKSTIANLLTRFYDIDEGEILLDGHDLRDYTLASLRNQVALVSQNVHLFNDTIANNIAYARTEQYSREQIEEAARMAYAM 460 (582)
T ss_pred CHHHHHHHHHhccCCCCceEEECCEEhhhcCHHHHHhhceEEccCceeecchHHHHHhcCCCCCCCHHHHHHHHHHhCcH
Confidence 999999999999999999999999999999999999999999999999999999999999765 5899999999999999
Q ss_pred HHHhcCCCCccccccCCCCCCChHHHHHHHHHHhcccCCCeeEEeCcccCCCHHHHHHHHHHHHHHcCCCeEEEEccCcc
Q 001411 324 SFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLS 403 (1082)
Q Consensus 324 ~~i~~lp~g~~t~~g~~g~~LSgGqkqri~lARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~vtH~~~ 403 (1082)
++++++|+|+||.+|++|.+||||||||++|||||+++|+|+|||||||+||+++++.+.+.|.++.+++|+|+||||++
T Consensus 461 ~~i~~lp~Gldt~ig~~g~~LSGGqrQRi~LARall~~~~ililDEptsaLD~~t~~~i~~~l~~~~~~~tvI~VtHr~~ 540 (582)
T PRK11176 461 DFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLS 540 (582)
T ss_pred HHHHhcccccCceeCCCCCcCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEecchH
Confidence 99999999999999999999999999999999999999999999999999999999999999999878899999999999
Q ss_pred ccccCCEEEEEeCCEEEEecCchhhhhcCchhHHHHHhh
Q 001411 404 TVRDVDTIMVLKNGQVVESGTHVDLISKGGEYAALVNLQ 442 (1082)
Q Consensus 404 ~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~ 442 (1082)
.++.||+|++|++|++++.|+|++++++++.|++++..+
T Consensus 541 ~~~~~D~Ii~l~~g~i~e~g~~~~l~~~~~~y~~l~~~~ 579 (582)
T PRK11176 541 TIEKADEILVVEDGEIVERGTHAELLAQNGVYAQLHKMQ 579 (582)
T ss_pred HHHhCCEEEEEECCEEEEeCCHHHHHhCCChHHHHHHHH
Confidence 999999999999999999999999999999999998754
|
|
| >PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-73 Score=680.65 Aligned_cols=457 Identities=25% Similarity=0.412 Sum_probs=347.6
Q ss_pred cEEEEEEEEECCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHHhCCCCCCcEEEECCeeCCCCCH-HHHhhhc
Q 001411 205 QIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQL-KWLREQM 283 (1082)
Q Consensus 205 ~i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~-~~~~~~i 283 (1082)
.++++|++++|++. ++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. ..+|+.|
T Consensus 4 ~l~~~~l~~~~~~~--~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~i 81 (501)
T PRK11288 4 YLSFDGIGKTFPGV--KALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAALAAGV 81 (501)
T ss_pred eEEEeeeEEEECCE--EEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHhCCE
Confidence 48999999999743 49999999999999999999999999999999999999999999999999875543 4567789
Q ss_pred eEEccCCCcChh-cHHHHHhcCCCC-----CCHHHHHHHHHHhchHHHHhcCCCCccccccCCCCCCChHHHHHHHHHHh
Q 001411 284 GLVSQEPALFAT-SIANNILLGKED-----ASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARA 357 (1082)
Q Consensus 284 ~~v~Q~~~l~~~-ti~~ni~~g~~~-----~~~~~~~~~~~~~~~~~~i~~lp~g~~t~~g~~g~~LSgGqkqri~lARa 357 (1082)
+|++|++.+++. |++||+.++... .+..+..+ .+.+.++.+ |++........+||||||||++||||
T Consensus 82 ~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LSgGq~qrv~lara 154 (501)
T PRK11288 82 AIIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNY-----EAREQLEHL--GVDIDPDTPLKYLSIGQRQMVEIAKA 154 (501)
T ss_pred EEEEechhccCCCCHHHHHHhcccccccCCCCHHHHHH-----HHHHHHHHc--CCCCCcCCchhhCCHHHHHHHHHHHH
Confidence 999999988876 999999986421 11111111 112233333 33333445567899999999999999
Q ss_pred cccCCCeeEEeCcccCCCHHHHHHHHHHHHHHc-CCCeEEEEccCcccccc-CCEEEEEeCCEEEEecCchhhhhcCchh
Q 001411 358 VLRNPKILLLDEATSALDAESELIVQRALEKIM-SNRTTIVVAHRLSTVRD-VDTIMVLKNGQVVESGTHVDLISKGGEY 435 (1082)
Q Consensus 358 l~~~~~illlDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~~~~ 435 (1082)
|+.+|+++||||||++||+.+.+.+.+.|.++. +++|+|+|||+++.+.. ||+|++|++|+++..++..+...
T Consensus 155 l~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiiitHd~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~----- 229 (501)
T PRK11288 155 LARNARVIAFDEPTSSLSAREIEQLFRVIRELRAEGRVILYVSHRMEEIFALCDAITVFKDGRYVATFDDMAQVD----- 229 (501)
T ss_pred HHhCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecCccccCC-----
Confidence 999999999999999999999999999998874 47899999999998865 89999999999975432100000
Q ss_pred HHHHHhhhccccCCCCcccCCCCCCCCCCCCCCCCcccchhhhhhhhhhhccCCCCCCCchhHHHHHHHhcchhHHHHHH
Q 001411 436 AALVNLQSSEHLSNPSSICYSGSSRYSSFRDFPSSRRYDVEFESSKRRELQSSDQSFAPSPSIWELLKLNAAEWPYAVLG 515 (1082)
Q Consensus 436 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 515 (1082)
. + .. .
T Consensus 230 -----------------------------------------------~--~----------~~---~------------- 234 (501)
T PRK11288 230 -----------------------------------------------R--D----------QL---V------------- 234 (501)
T ss_pred -----------------------------------------------H--H----------HH---H-------------
Confidence 0 0 00 0
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHhcCCCchhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001411 516 SVGAILAGMEAPLFALGITHILTAFYSPHDSQIKRVVDQVALIFVGLAVVTIPVYLLQHYFYTLMGEHLTARVRLSMFSA 595 (1082)
Q Consensus 516 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 595 (1082)
. .
T Consensus 235 ----------------------~--------------------------------------------------------~ 236 (501)
T PRK11288 235 ----------------------Q--------------------------------------------------------A 236 (501)
T ss_pred ----------------------H--------------------------------------------------------H
Confidence 0 0
Q ss_pred HHhCCCccccccCCChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001411 596 ILSNEIGWFDLDENNTGLLISTLAADATLVRSALADRLSIIVQNVALTVTAFVIAFILSWRLAAVVAASLPLLIGAFVAE 675 (1082)
Q Consensus 596 ~l~~~~~ffd~~~~~~G~il~r~s~D~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~p~~~~~~~~~ 675 (1082)
. .... .
T Consensus 237 ~-------~~~~---~---------------------------------------------------------------- 242 (501)
T PRK11288 237 M-------VGRE---I---------------------------------------------------------------- 242 (501)
T ss_pred h-------cCCC---c----------------------------------------------------------------
Confidence 0 0000 0
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHccHHHHHHcCcHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001411 676 QLFLKGFGGDYNRAYSRATSVAREAIANIRTVAAYGIEKRISIQFASELSQPNKQALLRGHISGFGYGVSQLLSLCSYAL 755 (1082)
Q Consensus 676 ~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~tIra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 755 (1082)
T Consensus 243 -------------------------------------------------------------------------------- 242 (501)
T PRK11288 243 -------------------------------------------------------------------------------- 242 (501)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCCCCCcccccccccE
Q 001411 756 GLWYASVLIKQKGSNFGDIMKSFMVLIITALAVAETLALAPDIVKGSQALGPVFGILYRKTAIQPDDPASKEVTEIKGNI 835 (1082)
Q Consensus 756 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~~~~~~~~~~~~~~~~~~~~~~g~I 835 (1082)
.+ .... .+. +. ....+
T Consensus 243 --------------------------------------------------~~------~~~~-~~~-~~------~~~~l 258 (501)
T PRK11288 243 --------------------------------------------------GD------IYGY-RPR-PL------GEVRL 258 (501)
T ss_pred --------------------------------------------------cc------cccc-ccc-CC------CCcEE
Confidence 00 0000 000 00 01148
Q ss_pred EEEeEEEECCCCCCcccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCccCCCCC-HHHHhcceE
Q 001411 836 ELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLN-LRSLRRKIG 914 (1082)
Q Consensus 836 ~~~~Vs~~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~-~~~lR~~i~ 914 (1082)
+++|++++ .+++|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++...+ .+.+|++++
T Consensus 259 ~~~~~~~~-------~~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~ 331 (501)
T PRK11288 259 RLDGLKGP-------GLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDIRSPRDAIRAGIM 331 (501)
T ss_pred EEeccccC-------CcccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCcCCCceEEECCEECCCCCHHHHHhCCCE
Confidence 89999832 3899999999999999999999999999999999999999999999999987554 345678999
Q ss_pred EEcccCc---cc-cccHHHHhccCCCCC--------CHHHHHHHHHHhcHHHHHhhCccccc-ccccCCCCCCChhHHHH
Q 001411 915 LVQQEPA---LF-STTIYENIKYGNEDA--------SEIELMKATKAANAHGFISRMPEGYQ-SHVGDRGVQLSGGQKQR 981 (1082)
Q Consensus 915 ~VpQdp~---Lf-~gTIreNl~~~~~~~--------~d~ei~~al~~a~l~~~i~~lp~gld-t~v~e~G~~LSgGQrQr 981 (1082)
|+||+|. +| ..|+.+|+.++.... ...+- ...+.+++..+ |++ ........+||||||||
T Consensus 332 ~~~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~~--~l~~~~~~~~~~~LSgGq~qr 404 (501)
T PRK11288 332 LCPEDRKAEGIIPVHSVADNINISARRHHLRAGCLINNRWE-----AENADRFIRSL--NIKTPSREQLIMNLSGGNQQK 404 (501)
T ss_pred EcCcCHhhCCCcCCCCHHHHhccccchhhcccccccChHHH-----HHHHHHHHHhc--CcccCCccCccccCCHHHHHH
Confidence 9999973 55 479999997642110 11110 11122333333 231 12333445799999999
Q ss_pred HHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEecCchhhhc-cCEEEEEeCCEEEEecChHHHh
Q 001411 982 VAIARAILKNPSILLLDEATSALDTASENLIQEALDKLM-EGRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGSHEQLL 1059 (1082)
Q Consensus 982 laLARAlL~~~~ILlLDEaTS~LD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~G~~~eLl 1059 (1082)
++|||||+.+|++|||||||++||+.+.+.+.+.|++.. .+.|||+|||+++.+.. ||++++|++|++++.|++++..
T Consensus 405 l~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~~~~~d~i~~l~~g~i~~~~~~~~~~ 484 (501)
T PRK11288 405 AILGRWLSEDMKVILLDEPTRGIDVGAKHEIYNVIYELAAQGVAVLFVSSDLPEVLGVADRIVVMREGRIAGELAREQAT 484 (501)
T ss_pred HHHHHHHccCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHhhCCEEEEEECCEEEEEEccccCC
Confidence 999999999999999999999999999999999998875 47899999999999965 9999999999999999998765
Q ss_pred h
Q 001411 1060 R 1060 (1082)
Q Consensus 1060 ~ 1060 (1082)
.
T Consensus 485 ~ 485 (501)
T PRK11288 485 E 485 (501)
T ss_pred H
Confidence 3
|
|
| >TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-71 Score=694.81 Aligned_cols=430 Identities=28% Similarity=0.414 Sum_probs=388.1
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHH
Q 001411 7 LRYLSQFFVGFAVGFTSVWQLTLLTLAVVPLIAVAGGAYTITMSTLSEKGEAAYGEAGKVAEEIISQVRAVYAFVGEAKA 86 (1082)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~ 86 (1082)
+..+..+++.++++++++|.+++++++.+|+++++..++.+..++..++.++..++..+.+.|.++|+++||++|+|+.+
T Consensus 277 ~~~~~~~~~~~~~l~~~~~~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~ 356 (708)
T TIGR01193 277 FLDMWILVIVGLFLVRQNMLLFLLSLLSIPVYAVIIILFKRTFNKLNHDAMQANAVLNSSIIEDLNGIETIKSLTSEAER 356 (708)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccHHH
Confidence 34455556666778889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001411 87 IESYSHSLKEALKQGKKSGVAKGIGVGLTYGLLFCAWALLLWYAGILVRHGDTNGGKAFTTIINVIFSGFALGQAAPNLA 166 (1082)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~l~~g~~~~~~~~~~~~~~~l~~~~~~~~ 166 (1082)
.++|.+...+..+...+.....+....+..++..+..++++++|++++.+|.+|+|.++++.........|+.++...+.
T Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~il~~g~~lv~~g~ls~G~lva~~~l~~~~~~pl~~l~~~~~ 436 (708)
T TIGR01193 357 YSKIDSEFGDYLNKSFKYQKADQGQQAIKAVTKLILNVVILWTGAYLVMRGKLTLGQLITFNALLSYFLTPLENIINLQP 436 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999988888888877777777777777777778889999999999999999988887777777789999999999
Q ss_pred HHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCCCCcEEEEEEEEECCCCCCccccceeEEEeCCCEEEEEcCCCCcH
Q 001411 167 AIAKGKAAAANIISIIKENSHSSERPGDDGITLPKLAGQIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGK 246 (1082)
Q Consensus 167 ~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGK 246 (1082)
.+++++.+.+|+.++++.+++.+... .....+...+.|+++||+|+|+++ +++|+|+||+|+|||+++|+|||||||
T Consensus 437 ~~~~~~~~~~ri~~~l~~~~e~~~~~--~~~~~~~~~~~I~~~~vsf~y~~~-~~iL~~isl~i~~G~~vaIvG~SGsGK 513 (708)
T TIGR01193 437 KLQAARVANNRLNEVYLVDSEFINKK--KRTELNNLNGDIVINDVSYSYGYG-SNILSDISLTIKMNSKTTIVGMSGSGK 513 (708)
T ss_pred HHHHHHHHHHHHHHHHcCCCcccccc--cccCCCCCCCcEEEEEEEEEcCCC-CcceeceeEEECCCCEEEEECCCCCCH
Confidence 99999999999999997654432111 101112334679999999999743 459999999999999999999999999
Q ss_pred HHHHHHHHhCCCCCCcEEEECCeeCCCCCHHHHhhhceEEccCCCcChhcHHHHHhcC-CCCCCHHHHHHHHHHhchHHH
Q 001411 247 STIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNILLG-KEDASMDRVIEAAKAANAHSF 325 (1082)
Q Consensus 247 STll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ti~~ni~~g-~~~~~~~~~~~~~~~~~~~~~ 325 (1082)
|||+++|+|+|+|++|+|++||+|+++++.+++|++|+||||+|+||++||+|||.++ .++.+++++.++|+.++++++
T Consensus 514 STLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTI~eNi~l~~~~~~~~~~i~~a~~~a~l~~~ 593 (708)
T TIGR01193 514 STLAKLLVGFFQARSGEILLNGFSLKDIDRHTLRQFINYLPQEPYIFSGSILENLLLGAKENVSQDEIWAACEIAEIKDD 593 (708)
T ss_pred HHHHHHHhccCCCCCcEEEECCEEHHHcCHHHHHHheEEEecCceehhHHHHHHHhccCCCCCCHHHHHHHHHHhCCHHH
Confidence 9999999999999999999999999999999999999999999999999999999999 577889999999999999999
Q ss_pred HhcCCCCccccccCCCCCCChHHHHHHHHHHhcccCCCeeEEeCcccCCCHHHHHHHHHHHHHHcCCCeEEEEccCcccc
Q 001411 326 VEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTV 405 (1082)
Q Consensus 326 i~~lp~g~~t~~g~~g~~LSgGqkqri~lARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~vtH~~~~~ 405 (1082)
+.++|+|+||.+||+|.+|||||||||+||||++++|+|||||||||+||+++++.+.+.|.++ +++|+|+||||++.+
T Consensus 594 i~~lp~gldt~i~e~G~~LSgGQrQRialARall~~p~iliLDE~Ts~LD~~te~~i~~~L~~~-~~~T~IiitHr~~~~ 672 (708)
T TIGR01193 594 IENMPLGYQTELSEEGSSISGGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNLLNL-QDKTIIFVAHRLSVA 672 (708)
T ss_pred HHhcccccCcEecCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHh-cCCEEEEEecchHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999885 679999999999999
Q ss_pred ccCCEEEEEeCCEEEEecCchhhhhcCchhHHHHH
Q 001411 406 RDVDTIMVLKNGQVVESGTHVDLISKGGEYAALVN 440 (1082)
Q Consensus 406 ~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~ 440 (1082)
+.||+|++|++|++++.|+|+|++++++.|+++++
T Consensus 673 ~~~D~i~~l~~G~i~~~G~~~~L~~~~~~y~~l~~ 707 (708)
T TIGR01193 673 KQSDKIIVLDHGKIIEQGSHDELLDRNGFYASLIH 707 (708)
T ss_pred HcCCEEEEEECCEEEEECCHHHHHhcCCcHHHHhh
Confidence 99999999999999999999999999999998864
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc. |
| >COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-72 Score=598.34 Aligned_cols=471 Identities=29% Similarity=0.490 Sum_probs=366.8
Q ss_pred cEEEEEEEEECC--CCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHHhCCCC-----CCcEEEECCeeCCCCCHH
Q 001411 205 QIEFSEVCFAYP--SRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEP-----TSGKILLDGHDLKSLQLK 277 (1082)
Q Consensus 205 ~i~~~~v~~~y~--~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~-----~~G~i~~~g~~~~~~~~~ 277 (1082)
-++++|++..|. +....++++|||++++||.+||||+||||||-..+.++|+++. -+|+|.++|.|+-..+..
T Consensus 6 lL~v~nLsV~f~~~~~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~se~ 85 (534)
T COG4172 6 LLSIRNLSVAFHQEGGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAASER 85 (534)
T ss_pred ceeeeccEEEEecCCcceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcCCHH
Confidence 478899988874 3334499999999999999999999999999999999999975 479999999999888877
Q ss_pred HHhh----hceEEccCCCc-Chh--cHHHH----HhcCCC---CCCHHHHHHHHHHhchHHHHhcCCCCccccccCCCCC
Q 001411 278 WLRE----QMGLVSQEPAL-FAT--SIANN----ILLGKE---DASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQ 343 (1082)
Q Consensus 278 ~~~~----~i~~v~Q~~~l-~~~--ti~~n----i~~g~~---~~~~~~~~~~~~~~~~~~~i~~lp~g~~t~~g~~g~~ 343 (1082)
.+|. +|++++|||.- .|. ||..- |.+-.. .+..+++.+.++.+++.+- .-.+.....+
T Consensus 86 ~lr~iRG~~I~MIFQEPMtSLNPl~tIg~Qi~E~l~~Hrg~~~~~Ar~r~lelL~~VgI~~p--------~~rl~~yPHe 157 (534)
T COG4172 86 QLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLHRGLSRAAARARALELLELVGIPEP--------EKRLDAYPHE 157 (534)
T ss_pred HHhhhcccceEEEecccccccCcHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCch--------hhhhhhCCcc
Confidence 7764 79999999942 222 54444 333221 1123455566666654321 1123344468
Q ss_pred CChHHHHHHHHHHhcccCCCeeEEeCcccCCCHHHHHHHHHHHHHHcC--CCeEEEEccCcccccc-CCEEEEEeCCEEE
Q 001411 344 LSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMS--NRTTIVVAHRLSTVRD-VDTIMVLKNGQVV 420 (1082)
Q Consensus 344 LSgGqkqri~lARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~ 420 (1082)
|||||||||.||-||+.+|++||-||||.|||...+.+|.+.|+++.+ +..+++|||++..+++ ||||+||.+|+++
T Consensus 158 LSGGqRQRVMIAMALan~P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~~~gMa~lfITHDL~iVr~~ADrV~VM~~G~iv 237 (534)
T COG4172 158 LSGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAELGMAILFITHDLGIVRKFADRVYVMQHGEIV 237 (534)
T ss_pred cCcchhhHHHHHHHHcCCCCeEeecCCcchhhhhhHHHHHHHHHHHHHHhCcEEEEEeccHHHHHHhhhhEEEEeccEEe
Confidence 999999999999999999999999999999999999999999998853 7899999999999986 8999999999999
Q ss_pred EecCchhhhhcCc-hhHHHHHhhhccccCCCCcccCCCCCCCCCCCCCCCCcccchhhhhhhhhhhccCCCCCCCchhHH
Q 001411 421 ESGTHVDLISKGG-EYAALVNLQSSEHLSNPSSICYSGSSRYSSFRDFPSSRRYDVEFESSKRRELQSSDQSFAPSPSIW 499 (1082)
Q Consensus 421 ~~g~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 499 (1082)
|.|+.+++.+... .|.+..
T Consensus 238 E~~~t~~lF~~PqHpYTr~L------------------------------------------------------------ 257 (534)
T COG4172 238 ETGTTETLFAAPQHPYTRKL------------------------------------------------------------ 257 (534)
T ss_pred ecCcHHHHhhCCCChHHHHH------------------------------------------------------------
Confidence 9998776654310 111000
Q ss_pred HHHHHhcchhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCchhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001411 500 ELLKLNAAEWPYAVLGSVGAILAGMEAPLFALGITHILTAFYSPHDSQIKRVVDQVALIFVGLAVVTIPVYLLQHYFYTL 579 (1082)
Q Consensus 500 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 579 (1082)
T Consensus 258 -------------------------------------------------------------------------------- 257 (534)
T COG4172 258 -------------------------------------------------------------------------------- 257 (534)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCccccccCCChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001411 580 MGEHLTARVRLSMFSAILSNEIGWFDLDENNTGLLISTLAADATLVRSALADRLSIIVQNVALTVTAFVIAFILSWRLAA 659 (1082)
Q Consensus 580 ~~~~~~~~l~~~l~~~~l~~~~~ffd~~~~~~G~il~r~s~D~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~ 659 (1082)
T Consensus 258 -------------------------------------------------------------------------------- 257 (534)
T COG4172 258 -------------------------------------------------------------------------------- 257 (534)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHccHHHHHHcCcHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 001411 660 VVAASLPLLIGAFVAEQLFLKGFGGDYNRAYSRATSVAREAIANIRTVAAYGIEKRISIQFASELSQPNKQALLRGHISG 739 (1082)
Q Consensus 660 ~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~tIra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 739 (1082)
T Consensus 258 -------------------------------------------------------------------------------- 257 (534)
T COG4172 258 -------------------------------------------------------------------------------- 257 (534)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCC
Q 001411 740 FGYGVSQLLSLCSYALGLWYASVLIKQKGSNFGDIMKSFMVLIITALAVAETLALAPDIVKGSQALGPVFGILYRKTAIQ 819 (1082)
Q Consensus 740 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~~~~~~~~~ 819 (1082)
++.+|.-.
T Consensus 258 ------------------------------------------------------------------------l~aeP~g~ 265 (534)
T COG4172 258 ------------------------------------------------------------------------LAAEPSGD 265 (534)
T ss_pred ------------------------------------------------------------------------HhcCCCCC
Confidence 00000000
Q ss_pred CCCCCCcccccccccEEEEeEEEECCCCCC--------cccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCc
Q 001411 820 PDDPASKEVTEIKGNIELRNVSFKYPVRPD--------ITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPIS 891 (1082)
Q Consensus 820 ~~~~~~~~~~~~~g~I~~~~Vs~~Y~~~~~--------~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~ 891 (1082)
+. +.+.....-++.+||...|+-+++ ..++++|||+.++||++||||+|||||||+-.+|+|+.+++
T Consensus 266 ~~----p~~~~~~~ll~~~~v~v~f~i~~g~~~r~~~~~~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allrL~~s~- 340 (534)
T COG4172 266 PP----PLPEDAPVLLEVEDLRVWFPIKGGFLRRTVDHLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPSQ- 340 (534)
T ss_pred CC----CCCCCCCceEEecceEEEEecCCccccccchheEEeccceeEecCCCeEEEEecCCCCcchHHHHHHhhcCcC-
Confidence 00 000011123777777777763321 24789999999999999999999999999999999999876
Q ss_pred cEEEECCccCCCCCHHH---HhcceEEEcccCc--ccc-ccHHHHhccC----CCCCC----HHHHHHHHHHhcHHHHHh
Q 001411 892 GTVLIDGYDIRTLNLRS---LRRKIGLVQQEPA--LFS-TTIYENIKYG----NEDAS----EIELMKATKAANAHGFIS 957 (1082)
Q Consensus 892 G~I~idG~di~~i~~~~---lR~~i~~VpQdp~--Lf~-gTIreNl~~~----~~~~~----d~ei~~al~~a~l~~~i~ 957 (1082)
|+|.++|.+|...+.+. +|+++-+|+|||+ |=+ .||.+-|.-| .|..+ |+.+.+|++.+|++.-..
T Consensus 341 G~I~F~G~~i~~~~~~~mrplR~~mQvVFQDPygSLsPRmtV~qII~EGL~vh~~~ls~~eR~~rv~~aL~EVGLDp~~r 420 (534)
T COG4172 341 GEIRFDGQDIDGLSRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEPKLSAAERDQRVIEALEEVGLDPATR 420 (534)
T ss_pred ceEEECCccccccChhhhhhhhhhceEEEeCCCCCCCcccCHHHHhhhhhhhcCCCCCHHHHHHHHHHHHHHcCCChhHh
Confidence 99999999999988765 6899999999997 322 3665555433 23334 455778888888865432
Q ss_pred hCcccccccccCCCCCCChhHHHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHhcC--CceEEEEecCchhh
Q 001411 958 RMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLME--GRTTIMVAHRLSTI 1035 (1082)
Q Consensus 958 ~lp~gldt~v~e~G~~LSgGQrQrlaLARAlL~~~~ILlLDEaTS~LD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti 1035 (1082)
. .-...||||||||||||||++-+|++++||||||+||..-..+|.+.++++.+ +-+-++|||+|..+
T Consensus 421 ~----------RYPhEFSGGQRQRIAIARAliLkP~~i~LDEPTSALD~SVQaQvv~LLr~LQ~k~~LsYLFISHDL~Vv 490 (534)
T COG4172 421 N----------RYPHEFSGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDLQQKHGLSYLFISHDLAVV 490 (534)
T ss_pred h----------cCCcccCcchhhHHHHHHHHhcCCcEEEecCCchHhhHHHHHHHHHHHHHHHHHhCCeEEEEeccHHHH
Confidence 1 12356999999999999999999999999999999999999999999998753 67999999999999
Q ss_pred hc-cCEEEEEeCCEEEEecChHHHhhhccchHHHHH
Q 001411 1036 RN-ADKIAVLQQGKVAEIGSHEQLLRKENGIYKQLI 1070 (1082)
Q Consensus 1036 ~~-~DrI~Vl~~G~ive~G~~~eLl~~~~g~f~~l~ 1070 (1082)
+. ||+|+||.+|+|||+|+-+++++++...|.+-+
T Consensus 491 rAl~~~viVm~~GkiVE~G~~~~if~~P~~~YT~~L 526 (534)
T COG4172 491 RALCHRVIVMRDGKIVEQGPTEAVFANPQHEYTRAL 526 (534)
T ss_pred HHhhceEEEEeCCEEeeeCCHHHHhcCCCcHHHHHH
Confidence 76 999999999999999999999998888887643
|
|
| >PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-72 Score=674.93 Aligned_cols=463 Identities=21% Similarity=0.388 Sum_probs=353.5
Q ss_pred cEEEEEEEEECCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHHhCCCCCCcEEEECCeeCCCCCHHHHh-hhc
Q 001411 205 QIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLR-EQM 283 (1082)
Q Consensus 205 ~i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~-~~i 283 (1082)
.++++|++++|++ ..+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...++ ..+
T Consensus 11 ~l~~~~l~~~~~~--~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i 88 (510)
T PRK15439 11 LLCARSISKQYSG--VEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAHQLGI 88 (510)
T ss_pred eEEEEeEEEEeCC--ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHhCCE
Confidence 5999999999974 3499999999999999999999999999999999999999999999999999877665554 469
Q ss_pred eEEccCCCcChh-cHHHHHhcCCCCCC--HHHHHHHHHHhchHHHHhcCCCCccccccCCCCCCChHHHHHHHHHHhccc
Q 001411 284 GLVSQEPALFAT-SIANNILLGKEDAS--MDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLR 360 (1082)
Q Consensus 284 ~~v~Q~~~l~~~-ti~~ni~~g~~~~~--~~~~~~~~~~~~~~~~i~~lp~g~~t~~g~~g~~LSgGqkqri~lARal~~ 360 (1082)
+|++|++.+++. |++||+.++..... .+++.++++.. |++........+||||||||++|||||+.
T Consensus 89 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~~~LSgG~~qrv~la~aL~~ 157 (510)
T PRK15439 89 YLVPQEPLLFPNLSVKENILFGLPKRQASMQKMKQLLAAL-----------GCQLDLDSSAGSLEVADRQIVEILRGLMR 157 (510)
T ss_pred EEEeccCccCCCCcHHHHhhcccccchHHHHHHHHHHHHc-----------CCCccccCChhhCCHHHHHHHHHHHHHHc
Confidence 999999988876 99999998753211 12233333333 33333445556899999999999999999
Q ss_pred CCCeeEEeCcccCCCHHHHHHHHHHHHHHc-CCCeEEEEccCcccccc-CCEEEEEeCCEEEEecCchhhhhcCchhHHH
Q 001411 361 NPKILLLDEATSALDAESELIVQRALEKIM-SNRTTIVVAHRLSTVRD-VDTIMVLKNGQVVESGTHVDLISKGGEYAAL 438 (1082)
Q Consensus 361 ~~~illlDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~ 438 (1082)
+|++|||||||++||+.+...+.+.|+++. +++|+|++||+++.+.. ||+|++|++|++++.|+++++.... .
T Consensus 158 ~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~-----~ 232 (510)
T PRK15439 158 DSRILILDEPTASLTPAETERLFSRIRELLAQGVGIVFISHKLPEIRQLADRISVMRDGTIALSGKTADLSTDD-----I 232 (510)
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecChHHcCHHH-----H
Confidence 999999999999999999999999998874 47899999999998864 8999999999999888766543210 0
Q ss_pred HHhhhccccCCCCcccCCCCCCCCCCCCCCCCcccchhhhhhhhhhhccCCCCCCCchhHHHHHHHhcchhHHHHHHHHH
Q 001411 439 VNLQSSEHLSNPSSICYSGSSRYSSFRDFPSSRRYDVEFESSKRRELQSSDQSFAPSPSIWELLKLNAAEWPYAVLGSVG 518 (1082)
Q Consensus 439 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 518 (1082)
......
T Consensus 233 ~~~~~~-------------------------------------------------------------------------- 238 (510)
T PRK15439 233 IQAITP-------------------------------------------------------------------------- 238 (510)
T ss_pred HHHHhC--------------------------------------------------------------------------
Confidence 000000
Q ss_pred HHHHHhHHHHHHHHHHHHHHHhcCCCchhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001411 519 AILAGMEAPLFALGITHILTAFYSPHDSQIKRVVDQVALIFVGLAVVTIPVYLLQHYFYTLMGEHLTARVRLSMFSAILS 598 (1082)
Q Consensus 519 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~l~ 598 (1082)
....
T Consensus 239 ------------------------~~~~---------------------------------------------------- 242 (510)
T PRK15439 239 ------------------------AARE---------------------------------------------------- 242 (510)
T ss_pred ------------------------cccc----------------------------------------------------
Confidence 0000
Q ss_pred CCCccccccCCChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001411 599 NEIGWFDLDENNTGLLISTLAADATLVRSALADRLSIIVQNVALTVTAFVIAFILSWRLAAVVAASLPLLIGAFVAEQLF 678 (1082)
Q Consensus 599 ~~~~ffd~~~~~~G~il~r~s~D~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~p~~~~~~~~~~~~ 678 (1082)
..+ .. .
T Consensus 243 ~~~---~~----~------------------------------------------------------------------- 248 (510)
T PRK15439 243 KSL---SA----S------------------------------------------------------------------- 248 (510)
T ss_pred ccc---cc----c-------------------------------------------------------------------
Confidence 000 00 0
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHccHHHHHHcCcHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001411 679 LKGFGGDYNRAYSRATSVAREAIANIRTVAAYGIEKRISIQFASELSQPNKQALLRGHISGFGYGVSQLLSLCSYALGLW 758 (1082)
Q Consensus 679 ~~~~~~~~~~~~~~~~~~~~e~l~g~~tIra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 758 (1082)
T Consensus 249 -------------------------------------------------------------------------------- 248 (510)
T PRK15439 249 -------------------------------------------------------------------------------- 248 (510)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCCCCCcccccccccEEEE
Q 001411 759 YASVLIKQKGSNFGDIMKSFMVLIITALAVAETLALAPDIVKGSQALGPVFGILYRKTAIQPDDPASKEVTEIKGNIELR 838 (1082)
Q Consensus 759 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~~~~~~~~~~~~~~~~~~~~~~g~I~~~ 838 (1082)
.+. .. ..+...+..+ +.+..|+++
T Consensus 249 -----------------------------------------------~~~-~~--~~~~~~~~~~------~~~~~l~~~ 272 (510)
T PRK15439 249 -----------------------------------------------QKL-WL--ELPGNRRQQA------AGAPVLTVE 272 (510)
T ss_pred -----------------------------------------------ccc-cc--cccccccccC------CCCceEEEe
Confidence 000 00 0000000000 001148999
Q ss_pred eEEEECCCCCCcccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCccCCCCCHHH-HhcceEEEc
Q 001411 839 NVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRS-LRRKIGLVQ 917 (1082)
Q Consensus 839 ~Vs~~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~-lR~~i~~Vp 917 (1082)
|++. .+|+|+||+|++||++||+|+||||||||+++|.|+.+|++|+|.++|.++...+... +|++|+|||
T Consensus 273 ~l~~--------~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~v~ 344 (510)
T PRK15439 273 DLTG--------EGFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQRLARGLVYLP 344 (510)
T ss_pred CCCC--------CCccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEECCCCCHHHHHhCCcEECC
Confidence 9983 1599999999999999999999999999999999999999999999999998776654 467899999
Q ss_pred ccC---cccc-ccHHHHhccCC----CC-CCHHHHHHHHHHhcHHHHHhhCccccc-ccccCCCCCCChhHHHHHHHHHH
Q 001411 918 QEP---ALFS-TTIYENIKYGN----ED-ASEIELMKATKAANAHGFISRMPEGYQ-SHVGDRGVQLSGGQKQRVAIARA 987 (1082)
Q Consensus 918 Qdp---~Lf~-gTIreNl~~~~----~~-~~d~ei~~al~~a~l~~~i~~lp~gld-t~v~e~G~~LSgGQrQrlaLARA 987 (1082)
|++ .+|. .|+.+|+.... +. ....+. +..+.++++.+ |++ .........||||||||++||||
T Consensus 345 q~~~~~~l~~~~t~~~~l~~~~~~~~~~~~~~~~~-----~~~~~~~l~~~--~l~~~~~~~~~~~LSgG~kqrl~la~a 417 (510)
T PRK15439 345 EDRQSSGLYLDAPLAWNVCALTHNRRGFWIKPARE-----NAVLERYRRAL--NIKFNHAEQAARTLSGGNQQKVLIAKC 417 (510)
T ss_pred CChhhCCccCCCcHHHHHHhhhhhhhccccChHHH-----HHHHHHHHHHc--CCCCCCccCccccCCcHHHHHHHHHHH
Confidence 996 3665 49999985320 10 011111 11123334443 333 23344456799999999999999
Q ss_pred HccCCCEEEeeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEecCchhhhc-cCEEEEEeCCEEEEecChHHHhh
Q 001411 988 ILKNPSILLLDEATSALDTASENLIQEALDKLM-EGRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGSHEQLLR 1060 (1082)
Q Consensus 988 lL~~~~ILlLDEaTS~LD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~G~~~eLl~ 1060 (1082)
|+.+|+||||||||++||+.+.+.+.+.|++.. +++|+|+|||+++.+.. ||+|++|++|+++..|+++++..
T Consensus 418 l~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tiIivsHd~~~i~~~~d~i~~l~~G~i~~~~~~~~~~~ 492 (510)
T PRK15439 418 LEASPQLLIVDEPTRGVDVSARNDIYQLIRSIAAQNVAVLFISSDLEEIEQMADRVLVMHQGEISGALTGAAINV 492 (510)
T ss_pred HhhCCCEEEECCCCcCcChhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEEccccCCH
Confidence 999999999999999999999999999999875 47899999999999976 99999999999999999988764
|
|
| >COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-71 Score=605.40 Aligned_cols=496 Identities=24% Similarity=0.340 Sum_probs=447.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccccccCCChhHHHHHHHhhHHHHHHHHHHHHH
Q 001411 555 VALIFVGLAVVTIPVYLLQHYFYTLMGEHLTARVRLSMFSAILSNEIGWFDLDENNTGLLISTLAADATLVRSALADRLS 634 (1082)
Q Consensus 555 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~l~~~~~ffd~~~~~~G~il~r~s~D~~~i~~~~~~~l~ 634 (1082)
...+.+++.++.+++-+++..+..+.+.++..+++..+|...+++|..- +..|+=. .--+|.+++++++...-.
T Consensus 65 Ltvlal~ly~~~glLd~iR~~~l~Rig~~lD~~L~~~v~~a~~~~~l~~-----~~~g~~~-Q~LrDL~qvR~Fltg~g~ 138 (580)
T COG4618 65 LTVLALGLYAFQGLLDAIRSRVLVRIGERLDRQLNGPVFAASFSAPLLR-----RGSGDGL-QPLRDLDQVRQFLTGTGL 138 (580)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHhhHHhh-----cCCCccc-cchhhHHHHHHHHcCCCc
Confidence 3344445556677788899999999999999999999999998777652 2233211 123699999999998888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHccHHHHHHcCcHH
Q 001411 635 IIVQNVALTVTAFVIAFILSWRLAAVVAASLPLLIGAFVAEQLFLKGFGGDYNRAYSRATSVAREAIANIRTVAAYGIEK 714 (1082)
Q Consensus 635 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~tIra~~~~~ 714 (1082)
..+.+....-+++.++|.++++++++.++...+++...++..+..++..++..+...+.+.+...+.++.++|+++|+..
T Consensus 139 ~A~fDaPW~P~yl~v~fl~Hp~lG~~a~~ga~iLv~la~ln~~~t~~p~~eA~~~~~~~~~~~~a~~RNAEvi~AMGM~~ 218 (580)
T COG4618 139 TAFFDAPWMPLYLAVIFLFHPWLGLIALAGAIILVVLALLNERATRKPLKEASEASIRANQLADATLRNAEVIEAMGMLG 218 (580)
T ss_pred chhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHhhhHHHHHHhcccH
Confidence 88888888999999999999999999999888888888888888887777888888888899999999999999999999
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 001411 715 RISIQFASELSQPNKQALLRGHISGFGYGVSQLLSLCSYALGLWYASVLIKQKGSNFGDIMKSFMVLIITALAVAETLAL 794 (1082)
Q Consensus 715 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 794 (1082)
...++|.+....+...+.+.+-..+....++..+-.......+.+|.+++..+++|.|.+++.-..+.....++..++..
T Consensus 219 ~l~~rW~~~~~~~L~~~~~asd~~~~~~~~Sr~~Rm~lQs~iLg~GA~Lvi~ge~t~G~mIA~SIl~gRaLaPid~aI~~ 298 (580)
T COG4618 219 NLAKRWGRFNAAYLSAQERASDRNGAFGALSRALRMALQSAVLGLGAWLVIKGEITPGMMIAGSILSGRALAPIDLAIAN 298 (580)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcceeeEEcCcCCcchhhHHHHHhhhhhccHHHHHHH
Confidence 99999999999888888888888888888899999999999999999999999999999999888888888999999999
Q ss_pred HHHHHHHHHHHHHHHHhhcccccCCCCCCCCcccccccccEEEEeEEEECCCCCCcccccceeEEeeCCcEEEEEcCCCC
Q 001411 795 APDIVKGSQALGPVFGILYRKTAIQPDDPASKEVTEIKGNIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGS 874 (1082)
Q Consensus 795 ~~~~~~~~~a~~ri~~~~~~~~~~~~~~~~~~~~~~~~g~I~~~~Vs~~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGS 874 (1082)
|.++..+..+..|+.+.+...|+..+ ..+.|..+|.+.++++++.-|+. ++|+|+|+||+++|||-+||+|||||
T Consensus 299 Wkq~~~Ar~s~~Rl~~lL~~~p~~~~----~m~LP~P~g~L~Ve~l~~~PPg~-~~pil~~isF~l~~G~~lgIIGPSgS 373 (580)
T COG4618 299 WKQFVAARQSYKRLNELLAELPAAAE----RMPLPAPQGALSVERLTAAPPGQ-KKPILKGISFALQAGEALGIIGPSGS 373 (580)
T ss_pred HHHHHHHHHHHHHHHHHHHhCccccC----CCCCCCCCceeeEeeeeecCCCC-CCcceecceeEecCCceEEEECCCCc
Confidence 99999999999999999987654332 23345567999999999976643 56999999999999999999999999
Q ss_pred CHHHHHHHHhccccCCccEEEECCccCCCCCHHHHhcceEEEcccCccccccHHHHhccCCCCCCHHHHHHHHHHhcHHH
Q 001411 875 GKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRKIGLVQQEPALFSTTIYENIKYGNEDASEIELMKATKAANAHG 954 (1082)
Q Consensus 875 GKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR~~i~~VpQdp~Lf~gTIreNl~~~~~~~~d~ei~~al~~a~l~~ 954 (1082)
|||||.++|.|.+.|++|+|++||-|+++++.+++-++|||.|||..||+|||+|||.-+.++.+++.|.+|++.++.||
T Consensus 374 GKSTLaR~lvG~w~p~~G~VRLDga~l~qWd~e~lG~hiGYLPQdVeLF~GTIaeNIaRf~~~~d~~kIieAA~lAgvHe 453 (580)
T COG4618 374 GKSTLARLLVGIWPPTSGSVRLDGADLRQWDREQLGRHIGYLPQDVELFDGTIAENIARFGEEADPEKVIEAARLAGVHE 453 (580)
T ss_pred cHHHHHHHHHcccccCCCcEEecchhhhcCCHHHhccccCcCcccceecCCcHHHHHHhccccCCHHHHHHHHHHcChHH
Confidence 99999999999999999999999999999999999999999999999999999999998778899999999999999999
Q ss_pred HHhhCcccccccccCCCCCCChhHHHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEecCch
Q 001411 955 FISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLM-EGRTTIMVAHRLS 1033 (1082)
Q Consensus 955 ~i~~lp~gldt~v~e~G~~LSgGQrQrlaLARAlL~~~~ILlLDEaTS~LD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ 1033 (1082)
.|.++|+||||.||++|..|||||||||+||||++.+|++++||||-||||.+-|+.+.++|.+.. +|+|+|+||||++
T Consensus 454 lIl~lP~GYdT~iG~~G~~LSgGQRQRIaLARAlYG~P~lvVLDEPNsNLD~~GE~AL~~Ai~~~k~rG~~vvviaHRPs 533 (580)
T COG4618 454 LILRLPQGYDTRIGEGGATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAHRPS 533 (580)
T ss_pred HHHhCcCCccCccCCCCCCCCchHHHHHHHHHHHcCCCcEEEecCCCCCcchhHHHHHHHHHHHHHHcCCEEEEEecCHH
Confidence 999999999999999999999999999999999999999999999999999999999999999875 6999999999999
Q ss_pred hhhccCEEEEEeCCEEEEecChHHHhhh
Q 001411 1034 TIRNADKIAVLQQGKVAEIGSHEQLLRK 1061 (1082)
Q Consensus 1034 ti~~~DrI~Vl~~G~ive~G~~~eLl~~ 1061 (1082)
.+..+|+|+||++|++..+|+-+|.+++
T Consensus 534 ~L~~~Dkilvl~~G~~~~FG~r~eVLa~ 561 (580)
T COG4618 534 ALASVDKILVLQDGRIAAFGPREEVLAK 561 (580)
T ss_pred HHhhcceeeeecCChHHhcCCHHHHHHH
Confidence 9999999999999999999999999874
|
|
| >TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-71 Score=691.36 Aligned_cols=424 Identities=30% Similarity=0.455 Sum_probs=386.6
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHH
Q 001411 6 ALRYLSQFFVGFAVGFTSVWQLTLLTLAVVPLIAVAGGAYTITMSTLSEKGEAAYGEAGKVAEEIISQVRAVYAFVGEAK 85 (1082)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~ 85 (1082)
.+..+..+++.++++++++|.++++.++.+|+++++..++.++.++..++.++..++..+.+.|.++|+++||.+++|+.
T Consensus 266 ~~~~~~~~~~~~~~l~~~~~~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~ 345 (694)
T TIGR03375 266 ALIDLPFALLFLLVIAIIGGPLVWVPLVAIPLILLPGLLLQRPLSRLAEESMRESAQRNAVLVESLSGLETIKALNAEGR 345 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHccccHH
Confidence 34455556666778889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHH
Q 001411 86 AIESYSHSLKEALKQGKKSGVAKGIGVGLTYGLLFCAWALLLWYAGILVRHGDTNGGKAFTTIINVIFSGFALGQAAPNL 165 (1082)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~l~~g~~~~~~~~~~~~~~~l~~~~~~~ 165 (1082)
+.++|.+...+..+...+..+.......+..++..+..++++++|++++.+|.+|+|.+++++.+......|+..+...+
T Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~g~~~v~~g~ls~G~l~a~~~~~~~~~~p~~~l~~~~ 425 (694)
T TIGR03375 346 FQRRWEQTVAALARSGLKSRFLSNLATNFAQFIQQLVSVAIVVVGVYLISDGELTMGGLIACVMLSGRALAPLGQLAGLL 425 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999988888888888777777777788888999999999999999998888777777778999999999
Q ss_pred HHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCCCCcEEEEEEEEECCCCCCccccceeEEEeCCCEEEEEcCCCCc
Q 001411 166 AAIAKGKAAAANIISIIKENSHSSERPGDDGITLPKLAGQIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSG 245 (1082)
Q Consensus 166 ~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsG 245 (1082)
..+..++.+.+|+.++++.+++.+.. ......+...+.|+++||+|+|++..+++|+|+||+|+|||+++|+|+||||
T Consensus 426 ~~~~~~~~~~~ri~~il~~~~e~~~~--~~~~~~~~~~~~I~~~~vsf~Y~~~~~~vL~~i~l~i~~G~~iaIvG~sGsG 503 (694)
T TIGR03375 426 TRYQQAKTALQSLDELMQLPVERPEG--TRFLHRPRLQGEIEFRNVSFAYPGQETPALDNVSLTIRPGEKVAIIGRIGSG 503 (694)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCCCCC--CCCCCCCCccceEEEEEEEEEeCCCCccceeeeeEEECCCCEEEEECCCCCC
Confidence 99999999999999999765542211 1111112234679999999999865556999999999999999999999999
Q ss_pred HHHHHHHHHhCCCCCCcEEEECCeeCCCCCHHHHhhhceEEccCCCcChhcHHHHHhcCCCCCCHHHHHHHHHHhchHHH
Q 001411 246 KSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNILLGKEDASMDRVIEAAKAANAHSF 325 (1082)
Q Consensus 246 KSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~ 325 (1082)
||||+++|+|+|+|++|+|.+||+|+++++.+++|++|+||+|+|++|++||+|||.+++|+.++++++++++.++++++
T Consensus 504 KSTLlklL~gl~~p~~G~I~idg~~l~~~~~~~lr~~i~~v~Q~~~lf~~TI~eNi~~~~~~~~~~~i~~a~~~~~l~~~ 583 (694)
T TIGR03375 504 KSTLLKLLLGLYQPTEGSVLLDGVDIRQIDPADLRRNIGYVPQDPRLFYGTLRDNIALGAPYADDEEILRAAELAGVTEF 583 (694)
T ss_pred HHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhccEEECCChhhhhhhHHHHHhCCCCCCCHHHHHHHHHHcChHHH
Confidence 99999999999999999999999999999999999999999999999999999999999988899999999999999999
Q ss_pred HhcCCCCccccccCCCCCCChHHHHHHHHHHhcccCCCeeEEeCcccCCCHHHHHHHHHHHHHHcCCCeEEEEccCcccc
Q 001411 326 VEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTV 405 (1082)
Q Consensus 326 i~~lp~g~~t~~g~~g~~LSgGqkqri~lARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~vtH~~~~~ 405 (1082)
++++|+|+||.+||+|.+||||||||++||||++++|+|+|||||||+||+++++.+.+.|.++.+++|+|+||||++++
T Consensus 584 i~~lp~gl~T~i~e~G~~LSgGQrQRlalARall~~p~iliLDE~Ts~LD~~te~~i~~~l~~~~~~~T~iiItHrl~~~ 663 (694)
T TIGR03375 584 VRRHPDGLDMQIGERGRSLSGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWLAGKTLVLVTHRTSLL 663 (694)
T ss_pred HHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999988899999999999999
Q ss_pred ccCCEEEEEeCCEEEEecCchhhhhc
Q 001411 406 RDVDTIMVLKNGQVVESGTHVDLISK 431 (1082)
Q Consensus 406 ~~~d~i~~l~~G~i~~~g~~~~l~~~ 431 (1082)
+.||+|++|++|++++.|+|+||+++
T Consensus 664 ~~~D~iivl~~G~i~e~G~~~eLl~~ 689 (694)
T TIGR03375 664 DLVDRIIVMDNGRIVADGPKDQVLEA 689 (694)
T ss_pred HhCCEEEEEeCCEEEeeCCHHHHHHH
Confidence 99999999999999999999999864
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export. |
| >TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-72 Score=674.85 Aligned_cols=460 Identities=23% Similarity=0.388 Sum_probs=347.1
Q ss_pred EEEEEEEEECCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHHhCCCC--CCcEEEECCeeCCCCCHHH-Hhhh
Q 001411 206 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEP--TSGKILLDGHDLKSLQLKW-LREQ 282 (1082)
Q Consensus 206 i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~--~~G~i~~~g~~~~~~~~~~-~~~~ 282 (1082)
++++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++| ++|+|.++|+++...+... .++.
T Consensus 2 l~i~~l~~~~~~--~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 79 (500)
T TIGR02633 2 LEMKGIVKTFGG--VKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTERAG 79 (500)
T ss_pred EEEEeEEEEeCC--eEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHhCC
Confidence 689999999974 3499999999999999999999999999999999999987 7999999999998766543 4567
Q ss_pred ceEEccCCCcChh-cHHHHHhcCCCC------CCHHHHHHHHHHhchHHHHhcCCCCccccc-cCCCCCCChHHHHHHHH
Q 001411 283 MGLVSQEPALFAT-SIANNILLGKED------ASMDRVIEAAKAANAHSFVEGLPDGYQTQV-GEGGTQLSGGQKQRIAI 354 (1082)
Q Consensus 283 i~~v~Q~~~l~~~-ti~~ni~~g~~~------~~~~~~~~~~~~~~~~~~i~~lp~g~~t~~-g~~g~~LSgGqkqri~l 354 (1082)
++||+|++.+++. |++||+.++... ...++..+ .+.+.++.+ |+.... .....+||||||||++|
T Consensus 80 i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~~LSgG~~qrv~i 152 (500)
T TIGR02633 80 IVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYL-----RAKNLLREL--QLDADNVTRPVGDYGGGQQQLVEI 152 (500)
T ss_pred EEEEeeccccCCCCcHHHHHHhhccccccccccCHHHHHH-----HHHHHHHHc--CCCCCcccCchhhCCHHHHHHHHH
Confidence 9999999988776 999999886421 11122111 112233333 332221 23356899999999999
Q ss_pred HHhcccCCCeeEEeCcccCCCHHHHHHHHHHHHHHc-CCCeEEEEccCcccccc-CCEEEEEeCCEEEEecCchhhhhcC
Q 001411 355 ARAVLRNPKILLLDEATSALDAESELIVQRALEKIM-SNRTTIVVAHRLSTVRD-VDTIMVLKNGQVVESGTHVDLISKG 432 (1082)
Q Consensus 355 ARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~ 432 (1082)
||||+.+|++|||||||++||+.+...+.+.|+++. +++|+|+|||+++.+.. ||+|++|++|+++..|+.+++...
T Consensus 153 A~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiitHd~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~- 231 (500)
T TIGR02633 153 AKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKAHGVACVYISHKLNEVKAVCDTICVIRDGQHVATKDMSTMSED- 231 (500)
T ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHHHhCCEEEEEeCCeEeeecCcccCCHH-
Confidence 999999999999999999999999999999998874 46899999999999865 899999999999866532211000
Q ss_pred chhHHHHHhhhccccCCCCcccCCCCCCCCCCCCCCCCcccchhhhhhhhhhhccCCCCCCCchhHHHHHHHhcchhHHH
Q 001411 433 GEYAALVNLQSSEHLSNPSSICYSGSSRYSSFRDFPSSRRYDVEFESSKRRELQSSDQSFAPSPSIWELLKLNAAEWPYA 512 (1082)
Q Consensus 433 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 512 (1082)
. ..
T Consensus 232 ----------------------------------------------------------------~---~~---------- 234 (500)
T TIGR02633 232 ----------------------------------------------------------------D---II---------- 234 (500)
T ss_pred ----------------------------------------------------------------H---HH----------
Confidence 0 00
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCchhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001411 513 VLGSVGAILAGMEAPLFALGITHILTAFYSPHDSQIKRVVDQVALIFVGLAVVTIPVYLLQHYFYTLMGEHLTARVRLSM 592 (1082)
Q Consensus 513 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l 592 (1082)
..
T Consensus 235 -------------------------~~----------------------------------------------------- 236 (500)
T TIGR02633 235 -------------------------TM----------------------------------------------------- 236 (500)
T ss_pred -------------------------HH-----------------------------------------------------
Confidence 00
Q ss_pred HHHHHhCCCccccccCCChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001411 593 FSAILSNEIGWFDLDENNTGLLISTLAADATLVRSALADRLSIIVQNVALTVTAFVIAFILSWRLAAVVAASLPLLIGAF 672 (1082)
Q Consensus 593 ~~~~l~~~~~ffd~~~~~~G~il~r~s~D~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~p~~~~~~ 672 (1082)
. +.. +.
T Consensus 237 ---~-------~~~---~~------------------------------------------------------------- 242 (500)
T TIGR02633 237 ---M-------VGR---EI------------------------------------------------------------- 242 (500)
T ss_pred ---H-------hCc---cc-------------------------------------------------------------
Confidence 0 000 00
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHccHHHHHHcCcHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001411 673 VAEQLFLKGFGGDYNRAYSRATSVAREAIANIRTVAAYGIEKRISIQFASELSQPNKQALLRGHISGFGYGVSQLLSLCS 752 (1082)
Q Consensus 673 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~tIra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 752 (1082)
T Consensus 243 -------------------------------------------------------------------------------- 242 (500)
T TIGR02633 243 -------------------------------------------------------------------------------- 242 (500)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCCCCCccccccc
Q 001411 753 YALGLWYASVLIKQKGSNFGDIMKSFMVLIITALAVAETLALAPDIVKGSQALGPVFGILYRKTAIQPDDPASKEVTEIK 832 (1082)
Q Consensus 753 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~~~~~~~~~~~~~~~~~~~~~~ 832 (1082)
. ...+. .+. +. .+
T Consensus 243 -----------------------------------------------------~------~~~~~-~~~-~~------~~ 255 (500)
T TIGR02633 243 -----------------------------------------------------T------SLYPH-EPH-EI------GD 255 (500)
T ss_pred -----------------------------------------------------c------ccccc-ccc-CC------CC
Confidence 0 00000 000 00 01
Q ss_pred ccEEEEeEEEECCCCCCcccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccC-CccEEEECCccCCCCCH-HHHh
Q 001411 833 GNIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDP-ISGTVLIDGYDIRTLNL-RSLR 910 (1082)
Q Consensus 833 g~I~~~~Vs~~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p-~~G~I~idG~di~~i~~-~~lR 910 (1082)
..|+++|++++|+...+.++|+|+||+|++||++||+|+||||||||+++|.|+++| ++|+|.++|.++...+. ..+|
T Consensus 256 ~~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~~G~i~~~g~~~~~~~~~~~~~ 335 (500)
T TIGR02633 256 VILEARNLTCWDVINPHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPVDIRNPAQAIR 335 (500)
T ss_pred ceEEEeCCcccccccccccccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCeEEEECCEECCCCCHHHHHh
Confidence 149999999999422234699999999999999999999999999999999999995 89999999999875443 5678
Q ss_pred cceEEEcccC---cccc-ccHHHHhccCCCC-------CCHHHHHHHHHHhcHHHHHhhCcccccc-cccCCCCCCChhH
Q 001411 911 RKIGLVQQEP---ALFS-TTIYENIKYGNED-------ASEIELMKATKAANAHGFISRMPEGYQS-HVGDRGVQLSGGQ 978 (1082)
Q Consensus 911 ~~i~~VpQdp---~Lf~-gTIreNl~~~~~~-------~~d~ei~~al~~a~l~~~i~~lp~gldt-~v~e~G~~LSgGQ 978 (1082)
++++||||++ .+|+ .|+++|+.++... ....+ ....+.++++.+ |+.. ........|||||
T Consensus 336 ~~i~~v~q~~~~~~l~~~~tv~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~l~~~--~l~~~~~~~~~~~LSgGq 408 (500)
T TIGR02633 336 AGIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAA-----ELQIIGSAIQRL--KVKTASPFLPIGRLSGGN 408 (500)
T ss_pred CCCEEcCcchhhCCcCCCCCHHHHhcchhhhhhccCCcCCHHH-----HHHHHHHHHHhc--CccCCCccCccccCCHHH
Confidence 8999999997 3665 5999999874210 11111 111122333333 2321 1233445799999
Q ss_pred HHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEecCchhhhc-cCEEEEEeCCEEEEecChH
Q 001411 979 KQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLM-EGRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGSHE 1056 (1082)
Q Consensus 979 rQrlaLARAlL~~~~ILlLDEaTS~LD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~G~~~ 1056 (1082)
|||++|||||+++|++|||||||++||+.+.+.+++.|++.. ++.|||+|||+++.+.. ||+|++|++|+++..++..
T Consensus 409 kqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~~~~~ 488 (500)
T TIGR02633 409 QQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQEGVAIIVVSSELAEVLGLSDRVLVIGEGKLKGDFVNH 488 (500)
T ss_pred HHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEEccc
Confidence 999999999999999999999999999999999999998864 47899999999999965 9999999999999877655
Q ss_pred HH
Q 001411 1057 QL 1058 (1082)
Q Consensus 1057 eL 1058 (1082)
++
T Consensus 489 ~~ 490 (500)
T TIGR02633 489 AL 490 (500)
T ss_pred cC
Confidence 43
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). |
| >KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-73 Score=613.67 Aligned_cols=422 Identities=34% Similarity=0.482 Sum_probs=373.2
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHHHHHHHH
Q 001411 22 TSVWQLTLLTLAVVPLIAVAGGAYTITMSTLSEKGEAAYGEAGKVAEEIISQVRAVYAFVGEAKAIESYSHSLKEALKQG 101 (1082)
Q Consensus 22 ~~~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~ 101 (1082)
.++|+.++++++++.++..+...+..+..+..++...++.+..+...+++-+.++||.|+.|+.+.++|.+...++.+..
T Consensus 356 ~Fn~wFgLIVfl~m~lY~~~Ti~iTeWRTk~rR~Mn~~~nesrAr~vDsllNFETVKyy~Ae~yEverYreAil~Yqk~E 435 (790)
T KOG0056|consen 356 KFNIWFGLIVFLMMLLYCYVTIKITEWRTKARRKMNNSWNESRARQVDSLLNFETVKYYNAEDYEVERYREAILKYQKQE 435 (790)
T ss_pred hHhHHHHHHHHHHHHHHhheeeeeehhhHHHHHHhhhhhhhhhhhhhhhhhcchhhhccCchhhhHHHHHHHHHHHHHHH
Confidence 46888999998888888887777777888888888888888889999999999999999999999999999888887777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001411 102 KKSGVAKGIGVGLTYGLLFCAWALLLWYAGILVRHGDTNGGKAFTTIINVIFSGFALGQAAPNLAAIAKGKAAAANIISI 181 (1082)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~l~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~ri~~~ 181 (1082)
.|....-.+.+.....+..+..+....+.+|+|..+.+|+|+...+..+++....|++.+......++....-+++++++
T Consensus 436 ~ks~~sLnfLN~~Qn~Ii~lgll~gsll~aY~Vt~q~ltVGDfVlf~TYliqLy~PLN~FGT~YR~iQ~nfiDmEnmfdl 515 (790)
T KOG0056|consen 436 WKSLASLNFLNIVQNGIIGLGLLAGSLLCAYRVTEQTLTVGDFVLFLTYLIQLYMPLNFFGTYYRSIQKNFIDMENMFDL 515 (790)
T ss_pred HHHHHHHHHHHHHhhhhhhhHHhhhhheeeeeeeeccccccceehHHHHHHHHhCchHHHHHHHHHHHHhhhhHHHHHHH
Confidence 66544433333333333333333333455688889999999977667778888899999999999999999999999999
Q ss_pred HhccCCCCCCCCCCCCCCCCCCCcEEEEEEEEECCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHHhCCCCCC
Q 001411 182 IKENSHSSERPGDDGITLPKLAGQIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTS 261 (1082)
Q Consensus 182 l~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~ 261 (1082)
++++++..+.+. ..+.....|.|+|+||+|.|+.+ +++|+||||+++||+.+|+|||||+||||++++|.++++.++
T Consensus 516 lkee~eVvd~P~--a~pl~~~~G~i~fsnvtF~Y~p~-k~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRffdv~s 592 (790)
T KOG0056|consen 516 LKEEPEVVDLPG--APPLKVTQGKIEFSNVTFAYDPG-KPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFDVNS 592 (790)
T ss_pred hhcCchhhcCCC--CCCccccCCeEEEEEeEEecCCC-CceeecceEEecCCcEEEEECCCCCchhHHHHHHHHHhhccC
Confidence 988776542221 12223346889999999999653 469999999999999999999999999999999999999999
Q ss_pred cEEEECCeeCCCCCHHHHhhhceEEccCCCcChhcHHHHHhcCCCCCCHHHHHHHHHHhchHHHHhcCCCCccccccCCC
Q 001411 262 GKILLDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGG 341 (1082)
Q Consensus 262 G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~lp~g~~t~~g~~g 341 (1082)
|.|.+||+|+++....++|++||+||||..|||+||..||.+++|.+++|++.+|++.+++||.|..+|+||+|.|||+|
T Consensus 593 GsI~iDgqdIrnvt~~SLRs~IGVVPQDtvLFNdTI~yNIryak~~AsneevyaAAkAA~IHdrIl~fPegY~t~VGERG 672 (790)
T KOG0056|consen 593 GSITIDGQDIRNVTQSSLRSSIGVVPQDTVLFNDTILYNIRYAKPSASNEEVYAAAKAAQIHDRILQFPEGYNTRVGERG 672 (790)
T ss_pred ceEEEcCchHHHHHHHHHHHhcCcccCcceeecceeeeheeecCCCCChHHHHHHHHHhhHHHHHhcCchhhhhhhhhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCChHHHHHHHHHHhcccCCCeeEEeCcccCCCHHHHHHHHHHHHHHcCCCeEEEEccCccccccCCEEEEEeCCEEEE
Q 001411 342 TQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRDVDTIMVLKNGQVVE 421 (1082)
Q Consensus 342 ~~LSgGqkqri~lARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~vtH~~~~~~~~d~i~~l~~G~i~~ 421 (1082)
-.|||||||||||||+++++|.|++|||+|||||..+|+.|+.++.++..++|.|+|+||++++-+||.|+++++|+|+|
T Consensus 673 LkLSGGEKQRVAiARtiLK~P~iIlLDEATSALDT~tER~IQaaL~rlca~RTtIVvAHRLSTivnAD~ILvi~~G~IvE 752 (790)
T KOG0056|consen 673 LKLSGGEKQRVAIARTILKAPSIILLDEATSALDTNTERAIQAALARLCANRTTIVVAHRLSTIVNADLILVISNGRIVE 752 (790)
T ss_pred cccCCcchhhHHHHHHHhcCCcEEEEcchhhhcCCccHHHHHHHHHHHhcCCceEEEeeeehheecccEEEEEeCCeEee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCchhhhhc-CchhHHHHHhhhccc
Q 001411 422 SGTHVDLISK-GGEYAALVNLQSSEH 446 (1082)
Q Consensus 422 ~g~~~~l~~~-~~~~~~~~~~~~~~~ 446 (1082)
.|+|+||+++ +|.|++||+.|+...
T Consensus 753 rG~HeeLl~rdgG~Ya~MWq~qqa~g 778 (790)
T KOG0056|consen 753 RGRHEELLKRDGGAYADMWQAQQAMG 778 (790)
T ss_pred cCcHHHHHhccCCcHHHHHHHHHhcC
Confidence 9999999988 889999998776543
|
|
| >PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-71 Score=672.11 Aligned_cols=432 Identities=26% Similarity=0.378 Sum_probs=383.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcc
Q 001411 4 GHALRYLSQFFVGFAVGFTSVWQLTLLTLAVVPLIAV-AGGAYTITMSTLSEKGEAAYGEAGKVAEEIISQVRAVYAFVG 82 (1082)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~l~l~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~ 82 (1082)
+.++..+..+++.++++++++|.+++++++++|++.+ +..++.++.++..++.++..++..+.+.|.++|+++||+|+.
T Consensus 139 ~~~~~~~~~~~~~~~~l~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~ 218 (574)
T PRK11160 139 SPLVAALVVILVLTIGLSFFDLTLALTLGGILLLLLLLLPLLFYRLGKKPGQDLTHLRAQYRVQLTEWLQGQAELTLFGA 218 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHCCHHHHHHcCC
Confidence 3455666677777888899999999998888887655 446677777888888888999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH-HHHHHHHHHH
Q 001411 83 EAKAIESYSHSLKEALKQGKKSGVAKGIGVGLTYGLLFCAWALLLWYAGILVRHGDTNGGKAFTTIINV-IFSGFALGQA 161 (1082)
Q Consensus 83 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~l~~g~~~~~~~~~-~~~~~~l~~~ 161 (1082)
|+.+.+++++..++..+...+..+..+....+..++..+..++++++|++++ +|.+++|.+++++.+. +....++..+
T Consensus 219 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~-~g~~t~g~l~a~~~~~~~~~~~~~~~l 297 (574)
T PRK11160 219 EDRYRQQLEQTEQQWLAAQRRQANLTGLSQALMILANGLTVVLMLWLAAGGV-GGNAQPGALIALFVFAALAAFEALMPV 297 (574)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccccchhHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999888888888777777777777788889999884 7889999877765443 2234567777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCCCCcEEEEEEEEECCCCCCccccceeEEEeCCCEEEEEcC
Q 001411 162 APNLAAIAKGKAAAANIISIIKENSHSSERPGDDGITLPKLAGQIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGP 241 (1082)
Q Consensus 162 ~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~ 241 (1082)
...+..++++..+++|+.++++.+++.+++.. . ......+.|+++||+|+|++.++++|+|+||+++|||+++|+||
T Consensus 298 ~~~~~~~~~~~~s~~ri~~ll~~~~~~~~~~~-~--~~~~~~~~i~~~~v~f~y~~~~~~il~~i~~~i~~G~~~aivG~ 374 (574)
T PRK11160 298 AGAFQHLGQVIASARRINEITEQKPEVTFPTT-S--TAAADQVSLTLNNVSFTYPDQPQPVLKGLSLQIKAGEKVALLGR 374 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCCCCCcc-c--CCCCCCCeEEEEEEEEECCCCCCcceecceEEECCCCEEEEECC
Confidence 78888999999999999999986554221111 1 11122457999999999986444699999999999999999999
Q ss_pred CCCcHHHHHHHHHhCCCCCCcEEEECCeeCCCCCHHHHhhhceEEccCCCcChhcHHHHHhcCCCCCCHHHHHHHHHHhc
Q 001411 242 SGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNILLGKEDASMDRVIEAAKAAN 321 (1082)
Q Consensus 242 sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ti~~ni~~g~~~~~~~~~~~~~~~~~ 321 (1082)
||||||||+++|+|+++|++|+|.+||+++++++.+++|++|+||+|+|++|++||+|||.++.|+.+++++.++++.++
T Consensus 375 sGsGKSTL~~ll~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~al~~~~ 454 (574)
T PRK11160 375 TGCGKSTLLQLLTRAWDPQQGEILLNGQPIADYSEAALRQAISVVSQRVHLFSATLRDNLLLAAPNASDEALIEVLQQVG 454 (574)
T ss_pred CCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhheeEEcccchhhcccHHHHhhcCCCccCHHHHHHHHHHcC
Confidence 99999999999999999999999999999999999999999999999999999999999999998889999999999999
Q ss_pred hHHHHhcCCCCccccccCCCCCCChHHHHHHHHHHhcccCCCeeEEeCcccCCCHHHHHHHHHHHHHHcCCCeEEEEccC
Q 001411 322 AHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHR 401 (1082)
Q Consensus 322 ~~~~i~~lp~g~~t~~g~~g~~LSgGqkqri~lARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~vtH~ 401 (1082)
+++++++ |+||||.+||+|.+||||||||++||||++++|+|+|||||||+||+++++.+.+.+.++.+++|+|+||||
T Consensus 455 l~~~i~~-p~GldT~vge~g~~LSgGqrqRialARall~~~~ililDE~ts~lD~~t~~~i~~~l~~~~~~~tviiitHr 533 (574)
T PRK11160 455 LEKLLED-DKGLNAWLGEGGRQLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHAQNKTVLMITHR 533 (574)
T ss_pred CHHHHcC-ccccCchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEecC
Confidence 9999999 999999999999999999999999999999999999999999999999999999999998889999999999
Q ss_pred ccccccCCEEEEEeCCEEEEecCchhhhhcCchhHHHHH
Q 001411 402 LSTVRDVDTIMVLKNGQVVESGTHVDLISKGGEYAALVN 440 (1082)
Q Consensus 402 ~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~ 440 (1082)
++.++.||+|++|++|++++.|+|+|++++++.|+++++
T Consensus 534 ~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~g~y~~l~~ 572 (574)
T PRK11160 534 LTGLEQFDRICVMDNGQIIEQGTHQELLAQQGRYYQLKQ 572 (574)
T ss_pred hhHHHhCCEEEEEeCCeEEEeCCHHHHHhcCcHHHHHHh
Confidence 999999999999999999999999999999999999875
|
|
| >PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-71 Score=666.73 Aligned_cols=454 Identities=22% Similarity=0.373 Sum_probs=345.7
Q ss_pred EEEEEEECCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHHhCCCCCCcEEEECCeeCCCCCH-HHHhhhceEE
Q 001411 208 FSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQL-KWLREQMGLV 286 (1082)
Q Consensus 208 ~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~-~~~~~~i~~v 286 (1082)
++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+. ..+++.++|+
T Consensus 1 ~~nl~~~~~~--~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v 78 (491)
T PRK10982 1 MSNISKSFPG--VKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALENGISMV 78 (491)
T ss_pred CCceEEEeCC--EEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCEECCCCCHHHHHhCCEEEE
Confidence 3689999974 349999999999999999999999999999999999999999999999999876543 3456789999
Q ss_pred ccCCCcChh-cHHHHHhcCCCC-----CCHHHHHHHHHHhchHHHHhcCCCCccccccCCCCCCChHHHHHHHHHHhccc
Q 001411 287 SQEPALFAT-SIANNILLGKED-----ASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLR 360 (1082)
Q Consensus 287 ~Q~~~l~~~-ti~~ni~~g~~~-----~~~~~~~~~~~~~~~~~~i~~lp~g~~t~~g~~g~~LSgGqkqri~lARal~~ 360 (1082)
+|++.++.. |++||+.++... .+.++..+ .+.+.++.+ |++........+||||||||++|||||+.
T Consensus 79 ~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LSgGq~qrv~lA~al~~ 151 (491)
T PRK10982 79 HQELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYR-----DTKAIFDEL--DIDIDPRAKVATLSVSQMQMIEIAKAFSY 151 (491)
T ss_pred ecccccccCCCHHHHhhcccccccccccCHHHHHH-----HHHHHHHHc--CCCCCccCchhhCCHHHHHHHHHHHHHHh
Confidence 999987765 999999876421 11121111 122334443 45545566677899999999999999999
Q ss_pred CCCeeEEeCcccCCCHHHHHHHHHHHHHHc-CCCeEEEEccCcccccc-CCEEEEEeCCEEEEecCchhhhhcCchhHHH
Q 001411 361 NPKILLLDEATSALDAESELIVQRALEKIM-SNRTTIVVAHRLSTVRD-VDTIMVLKNGQVVESGTHVDLISKGGEYAAL 438 (1082)
Q Consensus 361 ~~~illlDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~ 438 (1082)
+|++|||||||++||+.+.+.+.+.|+++. +++|+|+|||+++.+.. ||+|++|++|++++.|+++++... ..
T Consensus 152 ~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~-----~~ 226 (491)
T PRK10982 152 NAKIVIMDEPTSSLTEKEVNHLFTIIRKLKERGCGIVYISHKMEEIFQLCDEITILRDGQWIATQPLAGLTMD-----KI 226 (491)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEeecChhhCCHH-----HH
Confidence 999999999999999999999999998874 47899999999998864 899999999999987754332100 00
Q ss_pred HHhhhccccCCCCcccCCCCCCCCCCCCCCCCcccchhhhhhhhhhhccCCCCCCCchhHHHHHHHhcchhHHHHHHHHH
Q 001411 439 VNLQSSEHLSNPSSICYSGSSRYSSFRDFPSSRRYDVEFESSKRRELQSSDQSFAPSPSIWELLKLNAAEWPYAVLGSVG 518 (1082)
Q Consensus 439 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 518 (1082)
.
T Consensus 227 ~------------------------------------------------------------------------------- 227 (491)
T PRK10982 227 I------------------------------------------------------------------------------- 227 (491)
T ss_pred H-------------------------------------------------------------------------------
Confidence 0
Q ss_pred HHHHHhHHHHHHHHHHHHHHHhcCCCchhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001411 519 AILAGMEAPLFALGITHILTAFYSPHDSQIKRVVDQVALIFVGLAVVTIPVYLLQHYFYTLMGEHLTARVRLSMFSAILS 598 (1082)
Q Consensus 519 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~l~ 598 (1082)
. ..
T Consensus 228 -------------------~--------------------------------------------------------~~-- 230 (491)
T PRK10982 228 -------------------A--------------------------------------------------------MM-- 230 (491)
T ss_pred -------------------H--------------------------------------------------------HH--
Confidence 0 00
Q ss_pred CCCccccccCCChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001411 599 NEIGWFDLDENNTGLLISTLAADATLVRSALADRLSIIVQNVALTVTAFVIAFILSWRLAAVVAASLPLLIGAFVAEQLF 678 (1082)
Q Consensus 599 ~~~~ffd~~~~~~G~il~r~s~D~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~p~~~~~~~~~~~~ 678 (1082)
+... .
T Consensus 231 -----~~~~---~------------------------------------------------------------------- 235 (491)
T PRK10982 231 -----VGRS---L------------------------------------------------------------------- 235 (491)
T ss_pred -----hCCC---c-------------------------------------------------------------------
Confidence 0000 0
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHccHHHHHHcCcHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001411 679 LKGFGGDYNRAYSRATSVAREAIANIRTVAAYGIEKRISIQFASELSQPNKQALLRGHISGFGYGVSQLLSLCSYALGLW 758 (1082)
Q Consensus 679 ~~~~~~~~~~~~~~~~~~~~e~l~g~~tIra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 758 (1082)
T Consensus 236 -------------------------------------------------------------------------------- 235 (491)
T PRK10982 236 -------------------------------------------------------------------------------- 235 (491)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCCCCCcccccccccEEEE
Q 001411 759 YASVLIKQKGSNFGDIMKSFMVLIITALAVAETLALAPDIVKGSQALGPVFGILYRKTAIQPDDPASKEVTEIKGNIELR 838 (1082)
Q Consensus 759 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~~~~~~~~~~~~~~~~~~~~~~g~I~~~ 838 (1082)
.+ ..+. +..+ +.+..|+++
T Consensus 236 -----------------------------------------------~~------~~~~--~~~~------~~~~~i~~~ 254 (491)
T PRK10982 236 -----------------------------------------------TQ------RFPD--KENK------PGEVILEVR 254 (491)
T ss_pred -----------------------------------------------cc------cccc--ccCC------CCCcEEEEe
Confidence 00 0000 0000 001249999
Q ss_pred eEEEECCCCCCcccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCccCCCCCHH-HHhcceEEEc
Q 001411 839 NVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLR-SLRRKIGLVQ 917 (1082)
Q Consensus 839 ~Vs~~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~-~lR~~i~~Vp 917 (1082)
|++++|. ++|+|+||+|++||++||+|+||||||||+++|.|+.+|++|+|.+||.++...+.. .+|+.++|+|
T Consensus 255 ~l~~~~~-----~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~~~ 329 (491)
T PRK10982 255 NLTSLRQ-----PSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKINNHNANEAINHGFALVT 329 (491)
T ss_pred CcccccC-----cccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCcCCccEEEECCEECCCCCHHHHHHCCCEEcC
Confidence 9998752 489999999999999999999999999999999999999999999999999876654 4578899999
Q ss_pred ccCc---ccc-ccHHHH-----hccCCCC---CCHHHHHHHHHHhcHHHHHhhCccccc-ccccCCCCCCChhHHHHHHH
Q 001411 918 QEPA---LFS-TTIYEN-----IKYGNED---ASEIELMKATKAANAHGFISRMPEGYQ-SHVGDRGVQLSGGQKQRVAI 984 (1082)
Q Consensus 918 Qdp~---Lf~-gTIreN-----l~~~~~~---~~d~ei~~al~~a~l~~~i~~lp~gld-t~v~e~G~~LSgGQrQrlaL 984 (1082)
|++. +|+ .|+.+| +...... .+..+.. ..+.++++.+ |+. ........+||||||||++|
T Consensus 330 q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~~LSgGq~qrv~l 402 (491)
T PRK10982 330 EERRSTGIYAYLDIGFNSLISNIRNYKNKVGLLDNSRMK-----SDTQWVIDSM--RVKTPGHRTQIGSLSGGNQQKVII 402 (491)
T ss_pred CchhhCCcccCCcHHHheehhhhhhhcccccccCcHHHH-----HHHHHHHHhc--CccCCCcccccccCCcHHHHHHHH
Confidence 9963 565 477666 3321110 1111111 1122333433 221 12344456799999999999
Q ss_pred HHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEecCchhhhc-cCEEEEEeCCEEEEecChHHHh
Q 001411 985 ARAILKNPSILLLDEATSALDTASENLIQEALDKLM-EGRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGSHEQLL 1059 (1082)
Q Consensus 985 ARAlL~~~~ILlLDEaTS~LD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~G~~~eLl 1059 (1082)
|||++++|+||||||||++||+.+.+.+.+.|++.. +++|||+|||+++.+.. |||+++|++|+++..++++++.
T Consensus 403 a~al~~~p~illLDEPt~gLD~~~~~~~~~~l~~l~~~~~tvi~vsHd~~~~~~~~d~v~~l~~g~i~~~~~~~~~~ 479 (491)
T PRK10982 403 GRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKKDKGIIIISSEMPELLGITDRILVMSNGLVAGIVDTKTTT 479 (491)
T ss_pred HHHHhcCCCEEEEcCCCcccChhHHHHHHHHHHHHHHCCCEEEEECCChHHHHhhCCEEEEEECCEEEEEEccccCC
Confidence 999999999999999999999999999999998864 58999999999999965 9999999999999888775443
|
|
| >TIGR01257 rim_protein retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-68 Score=689.53 Aligned_cols=220 Identities=27% Similarity=0.426 Sum_probs=185.5
Q ss_pred CcEEEEEEEEECCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHHhCCCCCCcEEEECCeeCCCCCHHHHhhhc
Q 001411 204 GQIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQM 283 (1082)
Q Consensus 204 ~~i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i 283 (1082)
..|+++|+++.|++.++.+++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++.. +...+|+.+
T Consensus 927 ~~L~I~nLsK~y~~~~k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~PtsG~I~i~G~dI~~-~~~~~r~~I 1005 (2272)
T TIGR01257 927 PGVCVKNLVKIFEPSGRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIET-NLDAVRQSL 1005 (2272)
T ss_pred ceEEEEeEEEEecCCCceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCCCCceEEEECCEECcc-hHHHHhhcE
Confidence 3699999999996333459999999999999999999999999999999999999999999999999864 456678899
Q ss_pred eEEccCCCcChh-cHHHHHhcCCCC--CCHHHHHHHHHHhchHHHHhcCCCCccccccCCCCCCChHHHHHHHHHHhccc
Q 001411 284 GLVSQEPALFAT-SIANNILLGKED--ASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLR 360 (1082)
Q Consensus 284 ~~v~Q~~~l~~~-ti~~ni~~g~~~--~~~~~~~~~~~~~~~~~~i~~lp~g~~t~~g~~g~~LSgGqkqri~lARal~~ 360 (1082)
|||+|++.+|+. |++|||.++... .+.++..+ .+.+.++.+ |++........+||||||||++|||||+.
T Consensus 1006 G~~pQ~~~L~~~LTV~E~L~f~~~lkg~~~~~~~~-----~v~~lL~~v--gL~~~~~~~~~~LSGGqKQRLsLArALi~ 1078 (2272)
T TIGR01257 1006 GMCPQHNILFHHLTVAEHILFYAQLKGRSWEEAQL-----EMEAMLEDT--GLHHKRNEEAQDLSGGMQRKLSVAIAFVG 1078 (2272)
T ss_pred EEEecCCcCCCCCCHHHHHHHHHHhcCCCHHHHHH-----HHHHHHHHc--CCchhhcCChhhCCHHHHHHHHHHHHHHc
Confidence 999999999876 999999874211 11111111 111223333 44444556667899999999999999999
Q ss_pred CCCeeEEeCcccCCCHHHHHHHHHHHHHHcCCCeEEEEccCcccccc-CCEEEEEeCCEEEEecCchhhhhc
Q 001411 361 NPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRD-VDTIMVLKNGQVVESGTHVDLISK 431 (1082)
Q Consensus 361 ~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 431 (1082)
+|+++|||||||+||+.+++.+++.|+++++++|+|++||+++.+.. ||||++|++|++++.|++++|.++
T Consensus 1079 ~PkVLLLDEPTSGLDp~sr~~l~~lL~~l~~g~TIIltTHdmdea~~laDrI~iL~~GkL~~~Gs~~~Lk~~ 1150 (2272)
T TIGR01257 1079 DAKVVVLDEPTSGVDPYSRRSIWDLLLKYRSGRTIIMSTHHMDEADLLGDRIAIISQGRLYCSGTPLFLKNC 1150 (2272)
T ss_pred CCCEEEEECCCcCCCHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEecCHHHHHHh
Confidence 99999999999999999999999999998778999999999999875 899999999999999999998765
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. |
| >PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-71 Score=664.00 Aligned_cols=452 Identities=21% Similarity=0.294 Sum_probs=342.7
Q ss_pred EEEEEEEEECCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHHhCCCCCCcEEEECCeeCCCCCHHHHhhhceE
Q 001411 206 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGL 285 (1082)
Q Consensus 206 i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 285 (1082)
|+++|++++|++. .+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.++|
T Consensus 4 l~~~~l~~~~~~~--~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~~G~i~~~~~~~~~~~~~~~~~~i~~ 81 (490)
T PRK10938 4 LQISQGTFRLSDT--KTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGERQSQFSHITRLSFEQLQKLVSD 81 (490)
T ss_pred EEEEeEEEEcCCe--eecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCceEEECCcccccCCHHHHHHHhce
Confidence 8899999999753 49999999999999999999999999999999999999999999999988876666667778999
Q ss_pred EccCCCc--C-------hhcHHHHHhcCCCCCCHHHHHHHHHHhchHHHHhcCCCCccccccCCCCCCChHHHHHHHHHH
Q 001411 286 VSQEPAL--F-------ATSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIAR 356 (1082)
Q Consensus 286 v~Q~~~l--~-------~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~lp~g~~t~~g~~g~~LSgGqkqri~lAR 356 (1082)
++|++.+ + ..|+++|+.++. ...+++.++++..++.+. ......+||||||||++|||
T Consensus 82 ~~q~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~l~~~-----------~~~~~~~LSgG~~qrv~la~ 148 (490)
T PRK10938 82 EWQRNNTDMLSPGEDDTGRTTAEIIQDEV--KDPARCEQLAQQFGITAL-----------LDRRFKYLSTGETRKTLLCQ 148 (490)
T ss_pred eccCcchhhcccchhhccccHHHhcccch--hHHHHHHHHHHHcCCHhh-----------hhCCcccCCHHHHHHHHHHH
Confidence 9998753 2 358999886542 113344455555544332 33445689999999999999
Q ss_pred hcccCCCeeEEeCcccCCCHHHHHHHHHHHHHHcC-CCeEEEEccCcccccc-CCEEEEEeCCEEEEecCchhhhhcCch
Q 001411 357 AVLRNPKILLLDEATSALDAESELIVQRALEKIMS-NRTTIVVAHRLSTVRD-VDTIMVLKNGQVVESGTHVDLISKGGE 434 (1082)
Q Consensus 357 al~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~-~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~~~ 434 (1082)
||+.+|++|||||||++||+.+.+.+.+.|.++.+ ++|+|+|||+++.+.. ||+|++|++|+++..|+++++.... .
T Consensus 149 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~-~ 227 (490)
T PRK10938 149 ALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQSGITLVLVLNRFDEIPDFVQFAGVLADCTLAETGEREEILQQA-L 227 (490)
T ss_pred HHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECCEEEEeCCHHHHhcch-h
Confidence 99999999999999999999999999999988754 6899999999998865 8999999999999888765543210 0
Q ss_pred hHHHHHhhhccccCCCCcccCCCCCCCCCCCCCCCCcccchhhhhhhhhhhccCCCCCCCchhHHHHHHHhcchhHHHHH
Q 001411 435 YAALVNLQSSEHLSNPSSICYSGSSRYSSFRDFPSSRRYDVEFESSKRRELQSSDQSFAPSPSIWELLKLNAAEWPYAVL 514 (1082)
Q Consensus 435 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 514 (1082)
...+..
T Consensus 228 ~~~~~~-------------------------------------------------------------------------- 233 (490)
T PRK10938 228 VAQLAH-------------------------------------------------------------------------- 233 (490)
T ss_pred hhhhhh--------------------------------------------------------------------------
Confidence 000000
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHhcCCCchhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001411 515 GSVGAILAGMEAPLFALGITHILTAFYSPHDSQIKRVVDQVALIFVGLAVVTIPVYLLQHYFYTLMGEHLTARVRLSMFS 594 (1082)
Q Consensus 515 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 594 (1082)
..
T Consensus 234 ------------------------------~~------------------------------------------------ 235 (490)
T PRK10938 234 ------------------------------SE------------------------------------------------ 235 (490)
T ss_pred ------------------------------hh------------------------------------------------
Confidence 00
Q ss_pred HHHhCCCccccccCCChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001411 595 AILSNEIGWFDLDENNTGLLISTLAADATLVRSALADRLSIIVQNVALTVTAFVIAFILSWRLAAVVAASLPLLIGAFVA 674 (1082)
Q Consensus 595 ~~l~~~~~ffd~~~~~~G~il~r~s~D~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~p~~~~~~~~ 674 (1082)
.+ ... ..+.
T Consensus 236 -----~~--~~~-~~~~--------------------------------------------------------------- 244 (490)
T PRK10938 236 -----QL--EGV-QLPE--------------------------------------------------------------- 244 (490)
T ss_pred -----cc--Ccc-ccCc---------------------------------------------------------------
Confidence 00 000 0000
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHccHHHHHHcCcHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001411 675 EQLFLKGFGGDYNRAYSRATSVAREAIANIRTVAAYGIEKRISIQFASELSQPNKQALLRGHISGFGYGVSQLLSLCSYA 754 (1082)
Q Consensus 675 ~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~tIra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 754 (1082)
T Consensus 245 -------------------------------------------------------------------------------- 244 (490)
T PRK10938 245 -------------------------------------------------------------------------------- 244 (490)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCCCCCccccccccc
Q 001411 755 LGLWYASVLIKQKGSNFGDIMKSFMVLIITALAVAETLALAPDIVKGSQALGPVFGILYRKTAIQPDDPASKEVTEIKGN 834 (1082)
Q Consensus 755 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~~~~~~~~~~~~~~~~~~~~~~g~ 834 (1082)
.. .+.. +.... .....
T Consensus 245 ---------------------------------------------------------~~-~~~~-~~~~~-----~~~~~ 260 (490)
T PRK10938 245 ---------------------------------------------------------PD-EPSA-RHALP-----ANEPR 260 (490)
T ss_pred ---------------------------------------------------------cc-cccc-ccccC-----CCCce
Confidence 00 0000 00000 01124
Q ss_pred EEEEeEEEECCCCCCcccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccC-CccEEEECCccCCC-CCHHHHhcc
Q 001411 835 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDP-ISGTVLIDGYDIRT-LNLRSLRRK 912 (1082)
Q Consensus 835 I~~~~Vs~~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p-~~G~I~idG~di~~-i~~~~lR~~ 912 (1082)
|+++|++++|+ +.++|+|+||+|++||++||+|+||||||||+++|.|+.+| ++|+|.++|.++.. .+...+|++
T Consensus 261 l~~~~l~~~~~---~~~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 337 (490)
T PRK10938 261 IVLNNGVVSYN---DRPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQGYSNDLTLFGRRRGSGETIWDIKKH 337 (490)
T ss_pred EEEeceEEEEC---CeeEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCcccCCeEEEecccCCCCCCHHHHHhh
Confidence 99999999996 34699999999999999999999999999999999998875 69999999987642 234457889
Q ss_pred eEEEcccCcccc---ccHHHHhccCCC-------CCC---HHHHHHHHHHhcHHHHHhhCcccccccccCCCCCCChhHH
Q 001411 913 IGLVQQEPALFS---TTIYENIKYGNE-------DAS---EIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQK 979 (1082)
Q Consensus 913 i~~VpQdp~Lf~---gTIreNl~~~~~-------~~~---d~ei~~al~~a~l~~~i~~lp~gldt~v~e~G~~LSgGQr 979 (1082)
|+|+||++.++. .|+++++.++.. ... ++++.++++..++.+. ........||||||
T Consensus 338 i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~----------~~~~~~~~LSgGq~ 407 (490)
T PRK10938 338 IGYVSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVSDRQQKLAQQWLDILGIDKR----------TADAPFHSLSWGQQ 407 (490)
T ss_pred ceEECHHHHhhcccCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCchh----------hccCchhhCCHHHH
Confidence 999999987642 467777653211 011 1234444444444320 22334467999999
Q ss_pred HHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHhcC-C-ceEEEEecCchhhhc--cCEEEEEeCCEEEEec
Q 001411 980 QRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLME-G-RTTIMVAHRLSTIRN--ADKIAVLQQGKVAEIG 1053 (1082)
Q Consensus 980 QrlaLARAlL~~~~ILlLDEaTS~LD~~te~~I~~~l~~~~~-~-~TvI~IaHrl~ti~~--~DrI~Vl~~G~ive~G 1053 (1082)
||++|||||+++|++|||||||++||+.+.+.+.+.|++..+ + .|||+|||+++.+.. ||++++|++|+|++.-
T Consensus 408 qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~L~~l~~~~~~tviivsHd~~~~~~~~~d~v~~l~~G~i~~~~ 485 (490)
T PRK10938 408 RLALIVRALVKHPTLLILDEPLQGLDPLNRQLVRRFVDVLISEGETQLLFVSHHAEDAPACITHRLEFVPDGDIYRYV 485 (490)
T ss_pred HHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCcEEEEEecchhhhhhhhheeEEEecCCceEEee
Confidence 999999999999999999999999999999999999998753 4 479999999999964 7999999999998753
|
|
| >TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-69 Score=674.96 Aligned_cols=431 Identities=35% Similarity=0.487 Sum_probs=392.1
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHH
Q 001411 9 YLSQFFVGFAVGFTSVWQLTLLTLAVVPLIAVAGGAYTITMSTLSEKGEAAYGEAGKVAEEIISQVRAVYAFVGEAKAIE 88 (1082)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~ 88 (1082)
.+...++.++++++++|.+++++++++|+++++..++.+..++..++..+..++..+.+.|.++|+++||++|.|+.+.+
T Consensus 262 ~~~~~~~~~~~l~~~~~~l~li~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~ 341 (694)
T TIGR01846 262 DLLFVVVFLAVMFFYSPTLTGVVIGSLVCYALLSVFVGPILRKRVEDKFERSAAATSFLVESVTGIETIKATATEPQFQN 341 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcccCHHHHH
Confidence 34444555677889999999999999999988888888888888888888899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001411 89 SYSHSLKEALKQGKKSGVAKGIGVGLTYGLLFCAWALLLWYAGILVRHGDTNGGKAFTTIINVIFSGFALGQAAPNLAAI 168 (1082)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~l~~g~~~~~~~~~~~~~~~l~~~~~~~~~~ 168 (1082)
+|.+...+..+...+..+..+....+..++..+..++++++|++++.+|.+|+|.++++.........|+..+...+..+
T Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~il~~g~~lv~~g~it~G~lia~~~l~~~~~~pl~~l~~~~~~~ 421 (694)
T TIGR01846 342 RWDRQLAAYVAASFRVTNLGNIAGQAIELIQKLTFAILLWFGAHLVIGGALSPGQLVAFNMLAGRVTQPVLRLAQLWQDF 421 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999888888888887777777777888888999999999999999998887766666778999999999999
Q ss_pred HHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCCCCcEEEEEEEEECCCCCCccccceeEEEeCCCEEEEEcCCCCcHHH
Q 001411 169 AKGKAAAANIISIIKENSHSSERPGDDGITLPKLAGQIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKST 248 (1082)
Q Consensus 169 ~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKST 248 (1082)
++++.+++|+.++++.+++.+ .. .....+...+.|+++||+|+|++..+++|+|+||+++|||+++|+|+|||||||
T Consensus 422 ~~~~~~~~ri~~~l~~~~e~~-~~--~~~~~~~~~~~i~~~~vsf~y~~~~~~il~~i~l~i~~G~~vaivG~sGsGKST 498 (694)
T TIGR01846 422 QQTGIALERLGDILNSPTEPR-SA--GLAALPELRGAITFENIRFRYAPDSPEVLSNLNLDIKPGEFIGIVGPSGSGKST 498 (694)
T ss_pred HHHHHHHHHHHHHHcCCCCcc-CC--CCCCCCCCCCeEEEEEEEEEcCCCCccccccceEEECCCCEEEEECCCCCCHHH
Confidence 999999999999997654422 11 111122334679999999999755456999999999999999999999999999
Q ss_pred HHHHHHhCCCCCCcEEEECCeeCCCCCHHHHhhhceEEccCCCcChhcHHHHHhcCCCCCCHHHHHHHHHHhchHHHHhc
Q 001411 249 IISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNILLGKEDASMDRVIEAAKAANAHSFVEG 328 (1082)
Q Consensus 249 ll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~ 328 (1082)
|+++|+|+|+|++|+|.+||+|+++++.+++|++|+||+|+|++|++||+|||.++.|+.+++++.++|+.+++++++.+
T Consensus 499 L~~ll~g~~~p~~G~I~idg~~i~~~~~~~~r~~i~~v~q~~~lf~~ti~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~ 578 (694)
T TIGR01846 499 LTKLLQRLYTPQHGQVLVDGVDLAIADPAWLRRQMGVVLQENVLFSRSIRDNIALCNPGAPFEHVIHAAKLAGAHDFISE 578 (694)
T ss_pred HHHHHhcCCCCCCceEEECCEehhhCCHHHHHHhCeEEccCCeehhhhHHHHHhcCCCCCCHHHHHHHHHHcChHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999888899999999999999999999
Q ss_pred CCCCccccccCCCCCCChHHHHHHHHHHhcccCCCeeEEeCcccCCCHHHHHHHHHHHHHHcCCCeEEEEccCccccccC
Q 001411 329 LPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRDV 408 (1082)
Q Consensus 329 lp~g~~t~~g~~g~~LSgGqkqri~lARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~vtH~~~~~~~~ 408 (1082)
+|+|+||.+|++|.+||||||||++||||++++|+|+|||||||+||+++++.+.+.|.++.+++|+|+||||++.++.|
T Consensus 579 lp~gl~t~i~~~g~~LSgGq~qri~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~ 658 (694)
T TIGR01846 579 LPQGYNTEVGEKGANLSGGQRQRIAIARALVGNPRILIFDEATSALDYESEALIMRNMREICRGRTVIIIAHRLSTVRAC 658 (694)
T ss_pred CcCccCcEecCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHhCCCEEEEEeCChHHHHhC
Confidence 99999999999999999999999999999999999999999999999999999999999988889999999999999999
Q ss_pred CEEEEEeCCEEEEecCchhhhhcCchhHHHHHhh
Q 001411 409 DTIMVLKNGQVVESGTHVDLISKGGEYAALVNLQ 442 (1082)
Q Consensus 409 d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~ 442 (1082)
|+|++|++|++++.|+|++++++++.|+++++.+
T Consensus 659 d~ii~l~~G~i~~~g~~~~l~~~~~~y~~l~~~~ 692 (694)
T TIGR01846 659 DRIIVLEKGQIAESGRHEELLALQGLYARLWQQQ 692 (694)
T ss_pred CEEEEEeCCEEEEeCCHHHHHHcCChHHHHHHhh
Confidence 9999999999999999999999999999998654
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-69 Score=664.22 Aligned_cols=435 Identities=37% Similarity=0.555 Sum_probs=396.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcch
Q 001411 4 GHALRYLSQFFVGFAVGFTSVWQLTLLTLAVVPLIAVAGGAYTITMSTLSEKGEAAYGEAGKVAEEIISQVRAVYAFVGE 83 (1082)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e 83 (1082)
..++..+..+++.++++++++|.+++++++++|+++++..++.++.++..++.++..++..+.+.|.++|+++||.++.+
T Consensus 133 ~~~i~~~~~~~~~~~~l~~~~~~l~~i~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~ 212 (571)
T TIGR02203 133 IVLVRETLTVIGLFIVLLYYSWQLTLIVVVMLPVLSILMRRVSKRLRRISKEIQNSMGQVTTVAEETLQGYRVVKLFGGQ 212 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhccc
Confidence 34556677777788888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHH
Q 001411 84 AKAIESYSHSLKEALKQGKKSGVAKGIGVGLTYGLLFCAWALLLWYAGILVRHGDTNGGKAFTTIINVIFSGFALGQAAP 163 (1082)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~l~~g~~~~~~~~~~~~~~~l~~~~~ 163 (1082)
+.+.++|.+..++..+...+..+..+....+..++..+..++++++|++++.+|.+|+|.+++++.+......|+..+..
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~lt~g~l~a~~~~~~~~~~pl~~l~~ 292 (571)
T TIGR02203 213 AYETRRFDAVSNRNRRLAMKMTSAGSISSPITQLIASLALAVVLFIALFQAQAGSLTAGDFTAFITAMIALIRPLKSLTN 292 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHhHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999888888888888877777777777888889999999999999999998888777777889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCCCCcEEEEEEEEECCCCCCccccceeEEEeCCCEEEEEcCCC
Q 001411 164 NLAAIAKGKAAAANIISIIKENSHSSERPGDDGITLPKLAGQIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSG 243 (1082)
Q Consensus 164 ~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sG 243 (1082)
.+..+.+++.+.+|+.++++.+++.+.. . ...+...+.|+++||+|+|++.+.++|+|+||++++||+++|+|+||
T Consensus 293 ~~~~~~~~~~~~~ri~~~l~~~~~~~~~--~--~~~~~~~~~i~~~~v~f~y~~~~~~il~~inl~i~~G~~v~IvG~sG 368 (571)
T TIGR02203 293 VNAPMQRGLAAAESLFTLLDSPPEKDTG--T--RAIERARGDVEFRNVTFRYPGRDRPALDSISLVIEPGETVALVGRSG 368 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCCCC--C--CCCCCCCCeEEEEEEEEEcCCCCCccccCeeEEecCCCEEEEECCCC
Confidence 9999999999999999999765432211 1 11112345799999999998655569999999999999999999999
Q ss_pred CcHHHHHHHHHhCCCCCCcEEEECCeeCCCCCHHHHhhhceEEccCCCcChhcHHHHHhcCCC-CCCHHHHHHHHHHhch
Q 001411 244 SGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNILLGKE-DASMDRVIEAAKAANA 322 (1082)
Q Consensus 244 sGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ti~~ni~~g~~-~~~~~~~~~~~~~~~~ 322 (1082)
||||||+++|+|+++|++|+|.+||+++++++.+++|++|+||||+|++|++|++|||.++.+ +.+++++.++++.+++
T Consensus 369 sGKSTLl~lL~gl~~~~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~~l~~~~l 448 (571)
T TIGR02203 369 SGKSTLVNLIPRFYEPDSGQILLDGHDLADYTLASLRRQVALVSQDVVLFNDTIANNIAYGRTEQADRAEIERALAAAYA 448 (571)
T ss_pred CCHHHHHHHHHhccCCCCCeEEECCEeHHhcCHHHHHhhceEEccCcccccccHHHHHhcCCCCCCCHHHHHHHHHHcCh
Confidence 999999999999999999999999999999999999999999999999999999999999986 6789999999999999
Q ss_pred HHHHhcCCCCccccccCCCCCCChHHHHHHHHHHhcccCCCeeEEeCcccCCCHHHHHHHHHHHHHHcCCCeEEEEccCc
Q 001411 323 HSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRL 402 (1082)
Q Consensus 323 ~~~i~~lp~g~~t~~g~~g~~LSgGqkqri~lARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~vtH~~ 402 (1082)
++++.++|+|+||.+|++|.+||||||||++||||++++|+|+|||||||+||+++++.+.+.|.+..+++|+|+||||+
T Consensus 449 ~~~i~~lp~gldt~i~~~g~~LSgGqrQRiaLARall~~~~illLDEpts~LD~~~~~~i~~~L~~~~~~~tiIiitH~~ 528 (571)
T TIGR02203 449 QDFVDKLPLGLDTPIGENGVLLSGGQRQRLAIARALLKDAPILILDEATSALDNESERLVQAALERLMQGRTTLVIAHRL 528 (571)
T ss_pred HHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhCCCEEEEEehhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999988889999999999
Q ss_pred cccccCCEEEEEeCCEEEEecCchhhhhcCchhHHHHHhh
Q 001411 403 STVRDVDTIMVLKNGQVVESGTHVDLISKGGEYAALVNLQ 442 (1082)
Q Consensus 403 ~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~ 442 (1082)
+.++.||+|++|++|++++.|+|++++++++.|+++++.+
T Consensus 529 ~~~~~~D~ii~l~~g~i~~~g~~~~l~~~~~~~~~~~~~~ 568 (571)
T TIGR02203 529 STIEKADRIVVMDDGRIVERGTHNELLARNGLYAQLHNMQ 568 (571)
T ss_pred HHHHhCCEEEEEeCCEEEeeCCHHHHHHcCCHHHHHHHHh
Confidence 9999999999999999999999999999888999887644
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes. |
| >KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-70 Score=606.39 Aligned_cols=411 Identities=32% Similarity=0.476 Sum_probs=352.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHH
Q 001411 27 LTLLTLAVVPLIAVAGGAYTITMSTLSEKGEAAYGEAGKVAEEIISQVRAVYAFVGEAKAIESYSHSLKEALKQGKKSGV 106 (1082)
Q Consensus 27 l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 106 (1082)
.+++.+..+..+..+......+..+..++..++.+.+...+-|.|.|.++||.||-|+.+.++|.....++.+...+...
T Consensus 177 ~~li~~~~v~~Y~a~Ti~~t~~Rn~fR~~~N~Adn~as~~~~dsL~Nye~VKsfNnE~~Ea~~y~~~l~~~~~~~~~~~~ 256 (591)
T KOG0057|consen 177 FALITLGTVGAYAAFTIVVTRWRNRFRKAMNNADNSASRRAYDSLINYEIVKSFNNEEYEASRYDGSLKTYERAGLKYSS 256 (591)
T ss_pred HHHHHHHHHHHhheeEEeehhHHHHHHHHHHhhhhHHHHHHHHHHhhHHHHHHcccHHHHHHHHHHHHHHHHHhhhhHHh
Confidence 34444444444444555566677777778888888999999999999999999999999999999999999888887766
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 001411 107 AKGIGVGLTYGLLFCAWALLLWYAGILVRHGDTNGGKAFTTIINVIFSGFALGQAAPNLAAIAKGKAAAANIISIIKENS 186 (1082)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~l~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~ri~~~l~~~~ 186 (1082)
..++.+.....+.....+.+.+.|..-+.++.+|.|.+......+.....|+..+...+..+.++..-+.-++...+...
T Consensus 257 sl~~lnfgQ~~iFsv~~~~im~l~~~gi~~~~mtvgdlv~~n~l~~qL~~~l~~Lg~vyr~~~q~l~Dm~~~~~l~~~~~ 336 (591)
T KOG0057|consen 257 SLAFLNFGQKAIFSVALTFIMVLGSNGIAAGKMTVGDLVMVNSLLFQLSLPLNFLGSVYRELRQALTDMRTLFILLEVDE 336 (591)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccccchhhHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHhhhhhhh
Confidence 66666555555555556666677777788899999997766555556667888888888888777777766665543221
Q ss_pred CCCCCCCCCCCCCCCCCCcEEEEEEEEECCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHHhCCCCCCcEEEE
Q 001411 187 HSSERPGDDGITLPKLAGQIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILL 266 (1082)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~ 266 (1082)
... ....+...+.+.|+|+||+|+|+++ +++|+++||+|++||++||||+|||||||++++|+|+++ ++|+|++
T Consensus 337 ~i~----~~~~~i~~~~~~I~F~dV~f~y~~k-~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d-~sG~I~I 410 (591)
T KOG0057|consen 337 DIQ----EAALPIELFGGSIEFDDVHFSYGPK-RKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFD-YSGSILI 410 (591)
T ss_pred hhh----hccCCcccCCCcEEEEeeEEEeCCC-CceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhc-cCCcEEE
Confidence 111 1011222345679999999999753 349999999999999999999999999999999999999 9999999
Q ss_pred CCeeCCCCCHHHHhhhceEEccCCCcChhcHHHHHhcCCCCCCHHHHHHHHHHhchHHHHhcCCCCccccccCCCCCCCh
Q 001411 267 DGHDLKSLQLKWLREQMGLVSQEPALFATSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSG 346 (1082)
Q Consensus 267 ~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~lp~g~~t~~g~~g~~LSg 346 (1082)
||+|+++++++.+|+.|||||||..|||+||.+||.+|++.++++++.++|+.+++||.+.++|+||+|.+||+|..|||
T Consensus 411 dG~dik~~~~~SlR~~Ig~VPQd~~LFndTIl~NI~YGn~sas~eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSG 490 (591)
T KOG0057|consen 411 DGQDIKEVSLESLRQSIGVVPQDSVLFNDTILYNIKYGNPSASDEEVVEACKRAGLHDVISRLPDGYQTLVGERGLMLSG 490 (591)
T ss_pred CCeeHhhhChHHhhhheeEeCCcccccchhHHHHhhcCCCCcCHHHHHHHHHHcCcHHHHHhccccchhhHhhccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcccCCCeeEEeCcccCCCHHHHHHHHHHHHHHcCCCeEEEEccCccccccCCEEEEEeCCEEEEecCch
Q 001411 347 GQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRDVDTIMVLKNGQVVESGTHV 426 (1082)
Q Consensus 347 Gqkqri~lARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~vtH~~~~~~~~d~i~~l~~G~i~~~g~~~ 426 (1082)
||||||+||||+++||+|+++|||||+||.+||+.+.+.+.+...+||+|+|.||+++++.||+|+++++|++.+.|+|+
T Consensus 491 GekQrvslaRa~lKda~Il~~DEaTS~LD~~TE~~i~~~i~~~~~~rTvI~IvH~l~ll~~~DkI~~l~nG~v~e~gth~ 570 (591)
T KOG0057|consen 491 GEKQRVSLARAFLKDAPILLLDEATSALDSETEREILDMIMDVMSGRTVIMIVHRLDLLKDFDKIIVLDNGTVKEYGTHS 570 (591)
T ss_pred chHHHHHHHHHHhcCCCeEEecCcccccchhhHHHHHHHHHHhcCCCeEEEEEecchhHhcCCEEEEEECCeeEEeccHH
Confidence 99999999999999999999999999999999999999999988899999999999999999999999999999999999
Q ss_pred hhhhcCchhHHHHHhhh
Q 001411 427 DLISKGGEYAALVNLQS 443 (1082)
Q Consensus 427 ~l~~~~~~~~~~~~~~~ 443 (1082)
||+++++.|+++|..+.
T Consensus 571 ell~~s~~~~~~w~~~~ 587 (591)
T KOG0057|consen 571 ELLAPSELYADLWTTQT 587 (591)
T ss_pred HHhhhhhHHHHHhcccc
Confidence 99998889999987543
|
|
| >PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-69 Score=660.49 Aligned_cols=431 Identities=29% Similarity=0.427 Sum_probs=372.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchH
Q 001411 5 HALRYLSQFFVGFAVGFTSVWQLTLLTLAVVPLIAVAGGAYTITMSTLSEKGEAAYGEAGKVAEEIISQVRAVYAFVGEA 84 (1082)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~ 84 (1082)
.++..+..+++.++++++++|.+++++++++|++++...++.+..++..++.++..++..+.+.|.++|+++||.|+.|+
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~l~li~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~ 224 (592)
T PRK10790 145 TVLRSAALIGAMLVAMFSLDWRMALVAIMIFPAVLVVMVIYQRYSTPIVRRVRAYLADINDGFNEVINGMSVIQQFRQQA 224 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhhhhH
Confidence 44556666777777888899999999888888887777777777777777778888888999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHH
Q 001411 85 KAIESYSHSLKEALKQGKKSGVAKGIG-VGLTYGLLFCAWALLLWYAGILVRHGDTNGGKAFTTIINVIFSGFALGQAAP 163 (1082)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~v~~~~l~~g~~~~~~~~~~~~~~~l~~~~~ 163 (1082)
.+.+++.+..++..+...+..+..+.. ..+..++..+..+++++++++ +..|.+++|.+++++.+......|+..+..
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~is~g~l~a~~~~~~~~~~pl~~l~~ 303 (592)
T PRK10790 225 RFGERMGEASRSHYMARMQTLRLDGFLLRPLLSLFSALILCGLLMLFGF-SASGTIEVGVLYAFISYLGRLNEPLIELTT 303 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHCCCcCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999998887777766655554432 223333332222223333344 578999999988877666677788999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCCCCcEEEEEEEEECCCCCCccccceeEEEeCCCEEEEEcCCC
Q 001411 164 NLAAIAKGKAAAANIISIIKENSHSSERPGDDGITLPKLAGQIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSG 243 (1082)
Q Consensus 164 ~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sG 243 (1082)
.+..+.++..+++|+.++++.+++.. . .. ..+...+.|+++||+|+|+++ .++|+|+||++++||+++|+|+||
T Consensus 304 ~~~~~~~~~~s~~ri~~~l~~~~~~~-~--~~--~~~~~~~~i~~~~v~f~y~~~-~~il~~i~l~i~~Ge~iaIvG~SG 377 (592)
T PRK10790 304 QQSMLQQAVVAGERVFELMDGPRQQY-G--ND--DRPLQSGRIDIDNVSFAYRDD-NLVLQNINLSVPSRGFVALVGHTG 377 (592)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCccC-C--CC--ccCCCCCeEEEEEEEEEeCCC-CceeeceeEEEcCCCEEEEECCCC
Confidence 99999999999999999997543311 1 11 111223579999999999853 459999999999999999999999
Q ss_pred CcHHHHHHHHHhCCCCCCcEEEECCeeCCCCCHHHHhhhceEEccCCCcChhcHHHHHhcCCCCCCHHHHHHHHHHhchH
Q 001411 244 SGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNILLGKEDASMDRVIEAAKAANAH 323 (1082)
Q Consensus 244 sGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~ 323 (1082)
||||||+++|+|+|+|++|+|.+||+|+++++++++|++|+||||+|++|++||+|||.++. +.+++++.++|+.++++
T Consensus 378 sGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~l~~~i~~v~Q~~~lF~~Ti~~NI~~~~-~~~d~~i~~a~~~~gl~ 456 (592)
T PRK10790 378 SGKSTLASLLMGYYPLTEGEIRLDGRPLSSLSHSVLRQGVAMVQQDPVVLADTFLANVTLGR-DISEEQVWQALETVQLA 456 (592)
T ss_pred CCHHHHHHHHhcccCCCCceEEECCEEhhhCCHHHHHhheEEEccCCccccchHHHHHHhCC-CCCHHHHHHHHHHcCcH
Confidence 99999999999999999999999999999999999999999999999999999999999997 57889999999999999
Q ss_pred HHHhcCCCCccccccCCCCCCChHHHHHHHHHHhcccCCCeeEEeCcccCCCHHHHHHHHHHHHHHcCCCeEEEEccCcc
Q 001411 324 SFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLS 403 (1082)
Q Consensus 324 ~~i~~lp~g~~t~~g~~g~~LSgGqkqri~lARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~vtH~~~ 403 (1082)
++++++|+|+||.+||+|.+||||||||++|||||+++|+|+|||||||+||+++++.+.+.|+++.+++|+|+||||++
T Consensus 457 ~~i~~lp~Gldt~i~e~g~~LSGGqrQRialARaLl~~~~illlDEpts~LD~~t~~~i~~~l~~~~~~~tvIivtHr~~ 536 (592)
T PRK10790 457 ELARSLPDGLYTPLGEQGNNLSVGQKQLLALARVLVQTPQILILDEATANIDSGTEQAIQQALAAVREHTTLVVIAHRLS 536 (592)
T ss_pred HHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecchH
Confidence 99999999999999999999999999999999999999999999999999999999999999999888899999999999
Q ss_pred ccccCCEEEEEeCCEEEEecCchhhhhcCchhHHHHHhhh
Q 001411 404 TVRDVDTIMVLKNGQVVESGTHVDLISKGGEYAALVNLQS 443 (1082)
Q Consensus 404 ~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~ 443 (1082)
.++.||+|++|++|++++.|+|+|++++++.|+++++.+.
T Consensus 537 ~l~~~D~ii~l~~G~i~~~G~~~~L~~~~~~y~~l~~~~~ 576 (592)
T PRK10790 537 TIVEADTILVLHRGQAVEQGTHQQLLAAQGRYWQMYQLQL 576 (592)
T ss_pred HHHhCCEEEEEECCEEEEEcCHHHHHhCCCHHHHHHHHHh
Confidence 9999999999999999999999999999999999997654
|
|
| >PRK15064 ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-69 Score=654.22 Aligned_cols=479 Identities=23% Similarity=0.389 Sum_probs=340.1
Q ss_pred EEEEEEEEECCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHHhCCCCCCcEEEECCeeCCCCCHHHHhhhceE
Q 001411 206 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGL 285 (1082)
Q Consensus 206 i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 285 (1082)
|+++|++++|+++ ++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|. ..|+|
T Consensus 2 l~i~~ls~~~~~~--~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~i~~ 68 (530)
T PRK15064 2 LSTANITMQFGAK--PLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPSAGNVSLDPN-----------ERLGK 68 (530)
T ss_pred EEEEEEEEEeCCc--EeEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCC-----------CEEEE
Confidence 7899999999743 4999999999999999999999999999999999999999999999873 35999
Q ss_pred EccCCCcChh-cHHHHHhcCCCCC----------------CHH---HHHHH----------HHHhchHHHHhcCCCCccc
Q 001411 286 VSQEPALFAT-SIANNILLGKEDA----------------SMD---RVIEA----------AKAANAHSFVEGLPDGYQT 335 (1082)
Q Consensus 286 v~Q~~~l~~~-ti~~ni~~g~~~~----------------~~~---~~~~~----------~~~~~~~~~i~~lp~g~~t 335 (1082)
++|++.++.. |++||+.++.... ..+ .+.+. -....+.+.++.+ |++.
T Consensus 69 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--gl~~ 146 (530)
T PRK15064 69 LRQDQFAFEEFTVLDTVIMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGV--GIPE 146 (530)
T ss_pred EeccCCcCCCCcHHHHHHHhhHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhC--CCCh
Confidence 9999988765 9999998753100 000 00000 0011122334444 4432
Q ss_pred cc-cCCCCCCChHHHHHHHHHHhcccCCCeeEEeCcccCCCHHHHHHHHHHHHHHcCCCeEEEEccCcccccc-CCEEEE
Q 001411 336 QV-GEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRD-VDTIMV 413 (1082)
Q Consensus 336 ~~-g~~g~~LSgGqkqri~lARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~vtH~~~~~~~-~d~i~~ 413 (1082)
.. .....+||||||||++|||||+.+|++|||||||++||+.+...+.+.|.+ .++|||+|||+++.+.. ||+|++
T Consensus 147 ~~~~~~~~~LSgGq~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~--~~~tiiivsHd~~~~~~~~d~i~~ 224 (530)
T PRK15064 147 EQHYGLMSEVAPGWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNE--RNSTMIIISHDRHFLNSVCTHMAD 224 (530)
T ss_pred hHhcCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHh--CCCeEEEEeCCHHHHHhhcceEEE
Confidence 22 234578999999999999999999999999999999999999999999975 47899999999998865 899999
Q ss_pred EeCCEEE-EecCchhhhhcCchh-HHHHHhhhccccCCCCcccCCCCCCCCCCCCCCCCcccchhhhhhhhhhhccCCCC
Q 001411 414 LKNGQVV-ESGTHVDLISKGGEY-AALVNLQSSEHLSNPSSICYSGSSRYSSFRDFPSSRRYDVEFESSKRRELQSSDQS 491 (1082)
Q Consensus 414 l~~G~i~-~~g~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 491 (1082)
|++|+++ ..|++++.++..... ..... .... ..
T Consensus 225 l~~g~i~~~~g~~~~~~~~~~~~~~~~~~-------------------------------------~~~~-~~------- 259 (530)
T PRK15064 225 LDYGELRVYPGNYDEYMTAATQARERLLA-------------------------------------DNAK-KK------- 259 (530)
T ss_pred EeCCEEEEecCCHHHHHHHHHHHHHHHHH-------------------------------------HHHH-HH-------
Confidence 9999994 778776654310000 00000 0000 00
Q ss_pred CCCchhHHHHHHHhcchhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCchhhHhHHHHHHHHHHHHHHHHHHHHH
Q 001411 492 FAPSPSIWELLKLNAAEWPYAVLGSVGAILAGMEAPLFALGITHILTAFYSPHDSQIKRVVDQVALIFVGLAVVTIPVYL 571 (1082)
Q Consensus 492 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 571 (1082)
.
T Consensus 260 ------------------------------------------------------~------------------------- 260 (530)
T PRK15064 260 ------------------------------------------------------A------------------------- 260 (530)
T ss_pred ------------------------------------------------------H-------------------------
Confidence 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccccccCCChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001411 572 LQHYFYTLMGEHLTARVRLSMFSAILSNEIGWFDLDENNTGLLISTLAADATLVRSALADRLSIIVQNVALTVTAFVIAF 651 (1082)
Q Consensus 572 ~~~~~~~~~~~~~~~~l~~~l~~~~l~~~~~ffd~~~~~~G~il~r~s~D~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~ 651 (1082)
T Consensus 261 -------------------------------------------------------------------------------- 260 (530)
T PRK15064 261 -------------------------------------------------------------------------------- 260 (530)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHccHHHHHHcCcHHHHHHHHHHHHhhHHHHH
Q 001411 652 ILSWRLAAVVAASLPLLIGAFVAEQLFLKGFGGDYNRAYSRATSVAREAIANIRTVAAYGIEKRISIQFASELSQPNKQA 731 (1082)
Q Consensus 652 ~~~~~l~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~tIra~~~~~~~~~~~~~~~~~~~~~~ 731 (1082)
+.++.. ..+. + ..... . ......
T Consensus 261 ---------------------------------~~~~~~----~~~~---------~-~~~~~---~-------~~~~~~ 283 (530)
T PRK15064 261 ---------------------------------QIAELQ----SFVS---------R-FSANA---S-------KAKQAT 283 (530)
T ss_pred ---------------------------------HHHHHH----HHHH---------H-hhccc---h-------hhHHHH
Confidence 000000 0000 0 00000 0 000000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001411 732 LLRGHISGFGYGVSQLLSLCSYALGLWYASVLIKQKGSNFGDIMKSFMVLIITALAVAETLALAPDIVKGSQALGPVFGI 811 (1082)
Q Consensus 732 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~ 811 (1082)
....++...
T Consensus 284 -----------------------------------------------------------------------~~~~~~~~~ 292 (530)
T PRK15064 284 -----------------------------------------------------------------------SRAKQIDKI 292 (530)
T ss_pred -----------------------------------------------------------------------HHHHHHhhc
Confidence 000000000
Q ss_pred h-cccccCCCCCCC--Cc-ccccccccEEEEeEEEECCCCCCcccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHhccc
Q 001411 812 L-YRKTAIQPDDPA--SK-EVTEIKGNIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFY 887 (1082)
Q Consensus 812 ~-~~~~~~~~~~~~--~~-~~~~~~g~I~~~~Vs~~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~ 887 (1082)
. ...+........ .. .....+..|+++||+++|+ +.++|+|+||+|++||++||+||||||||||+++|+|++
T Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~---~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~ 369 (530)
T PRK15064 293 KLEEVKPSSRQNPFIRFEQDKKLHRNALEVENLTKGFD---NGPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGEL 369 (530)
T ss_pred cccccCCccccCceeeCCCCCCCCCceEEEEeeEEeeC---CceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 0 000000000000 00 0001123699999999996 346999999999999999999999999999999999999
Q ss_pred cCCccEEEECCccCCCCCHHHHhcceEEEcccCc--ccc-ccHHHHhccCC-CCCCHHHHHHHHHHhcHH-HHHhhCccc
Q 001411 888 DPISGTVLIDGYDIRTLNLRSLRRKIGLVQQEPA--LFS-TTIYENIKYGN-EDASEIELMKATKAANAH-GFISRMPEG 962 (1082)
Q Consensus 888 ~p~~G~I~idG~di~~i~~~~lR~~i~~VpQdp~--Lf~-gTIreNl~~~~-~~~~d~ei~~al~~a~l~-~~i~~lp~g 962 (1082)
+|++|+|.++|. ++++|+||++. +++ .|+++|+.... +...++++.++++..++. +.
T Consensus 370 ~p~~G~i~~~~~-----------~~i~~~~q~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~------- 431 (530)
T PRK15064 370 EPDSGTVKWSEN-----------ANIGYYAQDHAYDFENDLTLFDWMSQWRQEGDDEQAVRGTLGRLLFSQDD------- 431 (530)
T ss_pred CCCCeEEEECCc-----------eEEEEEcccccccCCCCCcHHHHHHHhccCCccHHHHHHHHHHcCCChhH-------
Confidence 999999999983 57999999984 443 59999986432 222344566666666652 22
Q ss_pred ccccccCCCCCCChhHHHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhc-cCEE
Q 001411 963 YQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLMEGRTTIMVAHRLSTIRN-ADKI 1041 (1082)
Q Consensus 963 ldt~v~e~G~~LSgGQrQrlaLARAlL~~~~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~-~DrI 1041 (1082)
......+||||||||++||||++++|+||||||||++||+.+.+.+.+.|++. +.|||+|||+++.+.. ||+|
T Consensus 432 ----~~~~~~~LSgGq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~~~~~~d~i 505 (530)
T PRK15064 432 ----IKKSVKVLSGGEKGRMLFGKLMMQKPNVLVMDEPTNHMDMESIESLNMALEKY--EGTLIFVSHDREFVSSLATRI 505 (530)
T ss_pred ----hcCcccccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHhCCEE
Confidence 22334679999999999999999999999999999999999999999999886 4599999999999876 9999
Q ss_pred EEEeCCEEE-EecChHHHhh
Q 001411 1042 AVLQQGKVA-EIGSHEQLLR 1060 (1082)
Q Consensus 1042 ~Vl~~G~iv-e~G~~~eLl~ 1060 (1082)
++|++|+++ +.|+++++++
T Consensus 506 ~~l~~g~i~~~~g~~~~~~~ 525 (530)
T PRK15064 506 IEITPDGVVDFSGTYEEYLR 525 (530)
T ss_pred EEEECCeEEEcCCCHHHHHH
Confidence 999999998 7899999876
|
|
| >PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-69 Score=652.93 Aligned_cols=429 Identities=30% Similarity=0.450 Sum_probs=383.8
Q ss_pred HHHHHHHHHH-HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHH
Q 001411 11 SQFFVGFAVG-FTSVWQLTLLTLAVVPLIAVAGGAYTITMSTLSEKGEAAYGEAGKVAEEIISQVRAVYAFVGEAKAIES 89 (1082)
Q Consensus 11 ~~~~~~~~~~-~~~~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~ 89 (1082)
..+++.++++ ++++|.+++++++++|+++++...+.++.++..++.++..++..+.+.|.++|+++||+|++|+.+.++
T Consensus 122 ~~~~~~~~~~~~~~~~~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~ 201 (569)
T PRK10789 122 VMGCAVLIVMSTQISWQLTLLALLPMPVMAIMIKRYGDQLHERFKLAQAAFSSLNDRTQESLTSIRMIKAFGLEDRQSAL 201 (569)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhcccHHHHHH
Confidence 3334444444 578999999999999998888888888888888888888899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001411 90 YSHSLKEALKQGKKSGVAKGIGVGLTYGLLFCAWALLLWYAGILVRHGDTNGGKAFTTIINVIFSGFALGQAAPNLAAIA 169 (1082)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~l~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~ 169 (1082)
|.+..++..+...+..+..+....+...+..+..++++++|++++.+|.+|+|.+++++.+......|+..+...+..+.
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~lv~~g~lt~g~l~a~~~~~~~~~~pl~~l~~~~~~~~ 281 (569)
T PRK10789 202 FAADAEDTGKKNMRVARIDARFDPTIYIAIGMANLLAIGGGSWMVVNGSLTLGQLTSFVMYLGLMIWPMLALAWMFNIVE 281 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99998888888888777777666666666666777788999999999999999988887777777788889999999999
Q ss_pred HHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCCCCcEEEEEEEEECCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHH
Q 001411 170 KGKAAAANIISIIKENSHSSERPGDDGITLPKLAGQIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTI 249 (1082)
Q Consensus 170 ~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl 249 (1082)
.++.+.+|+.++++.+++.+ . .. ...+...+.|+++|++|+|++.+.++|+|+||+++||++++|+||||||||||
T Consensus 282 ~~~~a~~ri~~ll~~~~~~~-~-~~--~~~~~~~~~I~~~~v~~~y~~~~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTL 357 (569)
T PRK10789 282 RGSAAYSRIRAMLAEAPVVK-D-GS--EPVPEGRGELDVNIRQFTYPQTDHPALENVNFTLKPGQMLGICGPTGSGKSTL 357 (569)
T ss_pred HHHHHHHHHHHHHcCCCccc-C-CC--CCCCCCCCcEEEEEEEEECCCCCCccccCeeEEECCCCEEEEECCCCCCHHHH
Confidence 99999999999997654321 1 11 11122345799999999998654569999999999999999999999999999
Q ss_pred HHHHHhCCCCCCcEEEECCeeCCCCCHHHHhhhceEEccCCCcChhcHHHHHhcCCCCCCHHHHHHHHHHhchHHHHhcC
Q 001411 250 ISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNILLGKEDASMDRVIEAAKAANAHSFVEGL 329 (1082)
Q Consensus 250 l~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l 329 (1082)
+++|+|+++|++|+|.+||+++.+++..++|++|+||+|+|++|++|++|||.++.++.+++++.++++.+++++++.++
T Consensus 358 l~ll~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~~l~~~i~~l 437 (569)
T PRK10789 358 LSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSRLAVVSQTPFLFSDTVANNIALGRPDATQQEIEHVARLASVHDDILRL 437 (569)
T ss_pred HHHHhcccCCCCCEEEECCEEHhhCCHHHHHhheEEEccCCeeccccHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999999998888899999999999999999999
Q ss_pred CCCccccccCCCCCCChHHHHHHHHHHhcccCCCeeEEeCcccCCCHHHHHHHHHHHHHHcCCCeEEEEccCccccccCC
Q 001411 330 PDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRDVD 409 (1082)
Q Consensus 330 p~g~~t~~g~~g~~LSgGqkqri~lARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~vtH~~~~~~~~d 409 (1082)
|+|++|.+|++|.+||||||||++||||++++|+|+|||||||+||+++++.+.+.|+++.+++|+|+||||++.++.||
T Consensus 438 p~gl~t~~~~~g~~LSgGq~qRi~lARall~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tii~itH~~~~~~~~d 517 (569)
T PRK10789 438 PQGYDTEVGERGVMLSGGQKQRISIARALLLNAEILILDDALSAVDGRTEHQILHNLRQWGEGRTVIISAHRLSALTEAS 517 (569)
T ss_pred cCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEecchhHHHcCC
Confidence 99999999999999999999999999999999999999999999999999999999999888999999999999999999
Q ss_pred EEEEEeCCEEEEecCchhhhhcCchhHHHHHhhh
Q 001411 410 TIMVLKNGQVVESGTHVDLISKGGEYAALVNLQS 443 (1082)
Q Consensus 410 ~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~ 443 (1082)
+|++|++|++++.|+|++++++++.|++++..+.
T Consensus 518 ~i~~l~~G~i~~~g~~~~l~~~~~~y~~l~~~~~ 551 (569)
T PRK10789 518 EILVMQHGHIAQRGNHDQLAQQSGWYRDMYRYQQ 551 (569)
T ss_pred EEEEEeCCEEEEecCHHHHHHcCChHHHHHHHhh
Confidence 9999999999999999999999999999987654
|
|
| >PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-69 Score=657.06 Aligned_cols=430 Identities=32% Similarity=0.501 Sum_probs=384.1
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHH
Q 001411 10 LSQFFVGFAVGFTSVWQLTLLTLAVVPLIAVAGGAYTITMSTLSEKGEAAYGEAGKVAEEIISQVRAVYAFVGEAKAIES 89 (1082)
Q Consensus 10 ~~~~~~~~~~~~~~~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~ 89 (1082)
+..+++.++++++++|.+++++++++|+..++...+.++.++..++.++..++..+.+.|.++|+++||.|+.++.+.++
T Consensus 141 ~~~~~~~~~~~~~~~~~l~l~~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~ 220 (588)
T PRK13657 141 LVALVVLLPLALFMNWRLSLVLVVLGIVYTLITTLVMRKTKDGQAAVEEHYHDLFAHVSDAIGNVSVVQSYNRIEAETQA 220 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHccchHHHHHH
Confidence 34444556666889999999998888888888888888888888888888999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001411 90 YSHSLKEALKQGKKSGVAKGIGVGLTYGLLFCAWALLLWYAGILVRHGDTNGGKAFTTIINVIFSGFALGQAAPNLAAIA 169 (1082)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~l~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~ 169 (1082)
+.+..++..+...+..........+..++..+..++++++|++++.+|.+|+|.+++++.+......|+..+...+..+.
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~~~a~~~l~~~~~~~l~~l~~~~~~~~ 300 (588)
T PRK13657 221 LRDIADNLLAAQMPVLSWWALASVLNRAASTITMLAILVLGAALVQKGQLRVGEVVAFVGFATLLIGRLDQVVAFINQVF 300 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999988888877777777766766777777778888999999999999999988877666666778888999999999
Q ss_pred HHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCCCCcEEEEEEEEECCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHH
Q 001411 170 KGKAAAANIISIIKENSHSSERPGDDGITLPKLAGQIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTI 249 (1082)
Q Consensus 170 ~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl 249 (1082)
.+..+++|+.++++.+++.+.. ......+...+.|+++||+|+||++ +++|+|+||+++|||+++|+|+||||||||
T Consensus 301 ~~~~~~~~i~~l~~~~~~~~~~--~~~~~~~~~~~~I~~~~vsf~y~~~-~~iL~~inl~i~~G~~v~IvG~sGsGKSTL 377 (588)
T PRK13657 301 MAAPKLEEFFEVEDAVPDVRDP--PGAIDLGRVKGAVEFDDVSFSYDNS-RQGVEDVSFEAKPGQTVAIVGPTGAGKSTL 377 (588)
T ss_pred HHHHHHHHHHHHhCCCcccCCC--CCCCCcCCCCCeEEEEEEEEEeCCC-CceecceeEEECCCCEEEEECCCCCCHHHH
Confidence 9999999999998754332111 1111111223579999999999853 359999999999999999999999999999
Q ss_pred HHHHHhCCCCCCcEEEECCeeCCCCCHHHHhhhceEEccCCCcChhcHHHHHhcCCCCCCHHHHHHHHHHhchHHHHhcC
Q 001411 250 ISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNILLGKEDASMDRVIEAAKAANAHSFVEGL 329 (1082)
Q Consensus 250 l~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l 329 (1082)
+++|+|+|+|++|+|.+||+++++++.+++|++|+||||+|++|++||+|||++++|+.++++++++++.+++++++.++
T Consensus 378 l~lL~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~d~~i~~al~~~~l~~~i~~l 457 (588)
T PRK13657 378 INLLQRVFDPQSGRILIDGTDIRTVTRASLRRNIAVVFQDAGLFNRSIEDNIRVGRPDATDEEMRAAAERAQAHDFIERK 457 (588)
T ss_pred HHHHhcCcCCCCCEEEECCEEhhhCCHHHHHhheEEEecCcccccccHHHHHhcCCCCCCHHHHHHHHHHhCHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999999998888899999999999999999999
Q ss_pred CCCccccccCCCCCCChHHHHHHHHHHhcccCCCeeEEeCcccCCCHHHHHHHHHHHHHHcCCCeEEEEccCccccccCC
Q 001411 330 PDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRDVD 409 (1082)
Q Consensus 330 p~g~~t~~g~~g~~LSgGqkqri~lARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~vtH~~~~~~~~d 409 (1082)
|+|+||.+|++|.+||||||||++|||||+++|+|+|||||||+||+++++.+.+.|.++.+++|+|+||||++.++.||
T Consensus 458 p~gldt~i~~~g~~LSgGq~QRialARall~~~~iliLDEpts~LD~~t~~~i~~~l~~~~~~~tvIiitHr~~~~~~~D 537 (588)
T PRK13657 458 PDGYDTVVGERGRQLSGGERQRLAIARALLKDPPILILDEATSALDVETEAKVKAALDELMKGRTTFIIAHRLSTVRNAD 537 (588)
T ss_pred cccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhcCCEEEEEEecHHHHHhCC
Confidence 99999999999999999999999999999999999999999999999999999999998878899999999999999999
Q ss_pred EEEEEeCCEEEEecCchhhhhcCchhHHHHHhh
Q 001411 410 TIMVLKNGQVVESGTHVDLISKGGEYAALVNLQ 442 (1082)
Q Consensus 410 ~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~ 442 (1082)
+|++|++|++++.|+|++++++++.|++++..+
T Consensus 538 ~ii~l~~G~i~~~g~~~~l~~~~~~y~~l~~~~ 570 (588)
T PRK13657 538 RILVFDNGRVVESGSFDELVARGGRFAALLRAQ 570 (588)
T ss_pred EEEEEECCEEEEeCCHHHHHHCCChHHHHHHHh
Confidence 999999999999999999999999999998754
|
|
| >TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-69 Score=703.62 Aligned_cols=213 Identities=27% Similarity=0.431 Sum_probs=181.7
Q ss_pred cEEEEeEEEECCCCC-CcccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccc---CCccEEEECCccCCCCCHHHH
Q 001411 834 NIELRNVSFKYPVRP-DITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYD---PISGTVLIDGYDIRTLNLRSL 909 (1082)
Q Consensus 834 ~I~~~~Vs~~Y~~~~-~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~---p~~G~I~idG~di~~i~~~~l 909 (1082)
.++++||+++|+.++ ++++|+|||++|+|||++||+||||||||||+++|.|..+ |++|+|.+||+++. ..+
T Consensus 759 ~l~~~nl~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~----~~~ 834 (1394)
T TIGR00956 759 IFHWRNLTYEVKIKKEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLD----SSF 834 (1394)
T ss_pred eEEEEeeEEEecCCCCCcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECC----hhh
Confidence 379999999996322 3579999999999999999999999999999999999998 78899999999985 257
Q ss_pred hcceEEEcccCc-cccccHHHHhccCC----C-CCCHHH----HHHHHHHhcHHHHHhhCcccccccccCCCCCCChhHH
Q 001411 910 RRKIGLVQQEPA-LFSTTIYENIKYGN----E-DASEIE----LMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQK 979 (1082)
Q Consensus 910 R~~i~~VpQdp~-Lf~gTIreNl~~~~----~-~~~d~e----i~~al~~a~l~~~i~~lp~gldt~v~e~G~~LSgGQr 979 (1082)
|++++||||++. ++..|+||||.++. + ..++++ +.++++..++. +..|+.+|+.|.+||||||
T Consensus 835 ~~~i~yv~Q~~~~~~~~Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~-------~~~d~~v~~~~~~LSgGqr 907 (1394)
T TIGR00956 835 QRSIGYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEME-------SYADAVVGVPGEGLNVEQR 907 (1394)
T ss_pred hcceeeecccccCCCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCCh-------hhCCCeeCCCCCCCCHHHh
Confidence 899999999876 45679999998642 1 233333 34455555543 3468999988889999999
Q ss_pred HHHHHHHHHccCCC-EEEeeCCCCCCCHHHHHHHHHHHHHh-cCCceEEEEecCchhh--hccCEEEEEeCC-EEEEecC
Q 001411 980 QRVAIARAILKNPS-ILLLDEATSALDTASENLIQEALDKL-MEGRTTIMVAHRLSTI--RNADKIAVLQQG-KVAEIGS 1054 (1082)
Q Consensus 980 QrlaLARAlL~~~~-ILlLDEaTS~LD~~te~~I~~~l~~~-~~~~TvI~IaHrl~ti--~~~DrI~Vl~~G-~ive~G~ 1054 (1082)
||++|||||+.+|+ ||+||||||+||+.+...|++.|++. .+|+|||+++|+++.. ..+|+|++|++| +++++|+
T Consensus 908 qRl~Ia~aL~~~P~~iLlLDEPTsgLD~~~~~~i~~~L~~la~~g~tvI~t~H~~~~~~~~~~D~vl~L~~GG~iv~~G~ 987 (1394)
T TIGR00956 908 KRLTIGVELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLADHGQAILCTIHQPSAILFEEFDRLLLLQKGGQTVYFGD 987 (1394)
T ss_pred hHHHHHHHHHcCCCeEEEEcCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHhcCEEEEEcCCCEEEEECC
Confidence 99999999999997 99999999999999999999999987 4689999999999974 569999999997 9999999
Q ss_pred hHH
Q 001411 1055 HEQ 1057 (1082)
Q Consensus 1055 ~~e 1057 (1082)
+.+
T Consensus 988 ~~~ 990 (1394)
T TIGR00956 988 LGE 990 (1394)
T ss_pred ccc
Confidence 743
|
|
| >COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-68 Score=593.21 Aligned_cols=414 Identities=26% Similarity=0.399 Sum_probs=354.0
Q ss_pred HHhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHHHHHHH
Q 001411 22 TSVWQLTLLTLA-VVPLIAVAGGAYTITMSTLSEKGEAAYGEAGKVAEEIISQVRAVYAFVGEAKAIESYSHSLKEALKQ 100 (1082)
Q Consensus 22 ~~~~~l~l~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~ 100 (1082)
+++|.+++.... ++.+++++..++.+.-++..++.....+...+.+.|.++|....+.||.++.+.+.+.+....+.+.
T Consensus 155 f~~~~~Alll~~~ll~~lli~P~~~~~~~~~~~~~l~~~r~~lr~~~td~v~G~~EL~~~g~~~~~~~~l~~~e~~~~~~ 234 (573)
T COG4987 155 FFSIPLALLLGLILLLLLLIIPTLFYRAGRKFGAHLAQGRAALRSQFTDWVQGQAELLIFGAEDAYRTALEATEASWLKA 234 (573)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHcccHHHHHHHHHHHHHHHHHH
Confidence 466777664443 4444445666777777777777777888889999999999999999999999999999999899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Q 001411 101 GKKSGVAKGIGVGLTYGLLFCAWA-LLLWYAGILVRHGDTNGGKAFTTIINVIFSGFALGQAA-PNLAAIAKGKAAAANI 178 (1082)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~v~~~~l~~g~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~a~~ri 178 (1082)
..|..++..+...+..++..+..+ +++|.+ ..+-.|..+...+...++.++....++..+. ..+..+.+...|++|+
T Consensus 235 q~k~~~~~~~~~a~~~l~~g~~v~~~l~w~a-~~~~~G~~~~~~aa~~ll~~f~~~eaf~~L~~~A~~~lgq~~~Sa~Rl 313 (573)
T COG4987 235 QRKQARFTGLSDAILLLIAGLLVIGLLLWMA-AQVGAGALAQPGAALALLVIFAALEAFEPLAPGAFQHLGQVIASARRL 313 (573)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCcCCCcchhHHHHHHHHHHHHHHHHhhhcchhHHHhhHHHHHHHHH
Confidence 999989888888877777666555 444444 3444566653333333333233334444444 5678889999999999
Q ss_pred HHHHhccCCCCCCCCCCCCCCCCCCCcEEEEEEEEECCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHHhCCC
Q 001411 179 ISIIKENSHSSERPGDDGITLPKLAGQIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYE 258 (1082)
Q Consensus 179 ~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~ 258 (1082)
.++++.+++...+ . + ..+.....++++||||+||+++.++|+|+||++++||++||+|+||||||||+++|.|-|+
T Consensus 314 ~~i~~q~~e~~~~-~-~--~~~~~~~~l~~~~vsF~y~~~~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~ 389 (573)
T COG4987 314 NDILDQKPEVTFP-D-E--QTATTGQALELRNVSFTYPGQQTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWD 389 (573)
T ss_pred hhhccCCcccCCC-c-c--ccCCccceeeeccceeecCCCccchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccC
Confidence 9999876654422 1 1 1111122799999999999887789999999999999999999999999999999999999
Q ss_pred CCCcEEEECCeeCCCCCHHHHhhhceEEccCCCcChhcHHHHHhcCCCCCCHHHHHHHHHHhchHHHHhcCCCCcccccc
Q 001411 259 PTSGKILLDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVG 338 (1082)
Q Consensus 259 ~~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~lp~g~~t~~g 338 (1082)
|++|+|.++|.++..++++.+|+.|++++|.+++|++|+|||+.+++|++++|+++++++.+++++.+++.|+|++|.+|
T Consensus 390 ~~~G~i~~~g~~~~~l~~~~~~e~i~vl~Qr~hlF~~Tlr~NL~lA~~~AsDEel~~aL~qvgL~~l~~~~p~gl~t~lg 469 (573)
T COG4987 390 PQQGSITLNGVEIASLDEQALRETISVLTQRVHLFSGTLRDNLRLANPDASDEELWAALQQVGLEKLLESAPDGLNTWLG 469 (573)
T ss_pred CCCCeeeECCcChhhCChhhHHHHHhhhccchHHHHHHHHHHHhhcCCCCCHHHHHHHHHHcCHHHHHHhChhhhhchhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCChHHHHHHHHHHhcccCCCeeEEeCcccCCCHHHHHHHHHHHHHHcCCCeEEEEccCccccccCCEEEEEeCCE
Q 001411 339 EGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRDVDTIMVLKNGQ 418 (1082)
Q Consensus 339 ~~g~~LSgGqkqri~lARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~vtH~~~~~~~~d~i~~l~~G~ 418 (1082)
|.|..||||||||++|||+|++|++++||||||.+||+.||+++++.+.+..++||+|+||||+..++.||+|+||++|+
T Consensus 470 e~G~~LSGGE~rRLAlAR~LL~dapl~lLDEPTegLD~~TE~~vL~ll~~~~~~kTll~vTHrL~~le~~drIivl~~Gk 549 (573)
T COG4987 470 EGGRRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLALLFEHAEGKTLLMVTHRLRGLERMDRIIVLDNGK 549 (573)
T ss_pred cCCCcCCchHHHHHHHHHHHHcCCCeEEecCCcccCChhhHHHHHHHHHHHhcCCeEEEEecccccHhhcCEEEEEECCe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCchhhhhcCchhHHHHH
Q 001411 419 VVESGTHVDLISKGGEYAALVN 440 (1082)
Q Consensus 419 i~~~g~~~~l~~~~~~~~~~~~ 440 (1082)
++++|+|.+|++++|.|.++++
T Consensus 550 iie~G~~~~Ll~~~g~~~~l~q 571 (573)
T COG4987 550 IIEEGTHAELLANNGRYKRLYQ 571 (573)
T ss_pred eeecCCHHhhhccccHHHHHhc
Confidence 9999999999999999998864
|
|
| >TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-68 Score=650.38 Aligned_cols=436 Identities=39% Similarity=0.611 Sum_probs=385.5
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHH
Q 001411 6 ALRYLSQFFVGFAVGFTSVWQLTLLTLAVVPLIAVAGGAYTITMSTLSEKGEAAYGEAGKVAEEIISQVRAVYAFVGEAK 85 (1082)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~ 85 (1082)
++..+..+++.++++++++|.+++++++.+|++++...++.+..++..++.++..++..+.+.|.++|+++||.++.|+.
T Consensus 139 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ik~~~~~~~ 218 (576)
T TIGR02204 139 ALRNALMCIGGLIMMFITSPKLTSLVLLAVPLVLLPILLFGRRVRKLSRESQDRIADAGSYAGETLGAIRTVQAFGHEDA 218 (576)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHhccCHH
Confidence 34455566666777888999999998888888888888889999998999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHH
Q 001411 86 AIESYSHSLKEALKQGKKSGVAKGIGVGLTYGLLFCAWALLLWYAGILVRHGDTNGGKAFTTIINVIFSGFALGQAAPNL 165 (1082)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~l~~g~~~~~~~~~~~~~~~l~~~~~~~ 165 (1082)
+.++|.+..++..+...+..........+..++.++..++++++|++++.+|.+|+|.++++..+......|+..++..+
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~~~~~~~~~~~~~~pl~~~~~~~ 298 (576)
T TIGR02204 219 ERSRFGGAVEKAYEAARQRIRTRALLTAIVIVLVFGAIVGVLWVGAHDVIAGKMSAGTLGQFVFYAVMVAGSIGTLSEVW 298 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999888887777776666666555555555666777889999999999999998777766666778899999999
Q ss_pred HHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCCCCcEEEEEEEEECCCCC-CccccceeEEEeCCCEEEEEcCCCC
Q 001411 166 AAIAKGKAAAANIISIIKENSHSSERPGDDGITLPKLAGQIEFSEVCFAYPSRP-HMVFENLNFSVDAGKTFAFVGPSGS 244 (1082)
Q Consensus 166 ~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~-~~~l~~i~l~i~~g~~~~ivG~sGs 244 (1082)
..+.+++.+++|+.++++.+++.+...... ....+..+.|+++||+|+||+++ +++|+|+||+++|||+++|+|+|||
T Consensus 299 ~~~~~~~~~~~ri~~~l~~~~~~~~~~~~~-~~~~~~~~~i~~~~v~f~y~~~~~~~iL~~inl~i~~Ge~i~IvG~sGs 377 (576)
T TIGR02204 299 GELQRAAGAAERLIELLQAEPDIKAPAHPK-TLPVPLRGEIEFEQVNFAYPARPDQPALDGLNLTVRPGETVALVGPSGA 377 (576)
T ss_pred HHHHHHHHHHHHHHHHhCCCCcCCCCCCCc-cCCcCCCceEEEEEEEEECCCCCCCccccceeEEecCCCEEEEECCCCC
Confidence 999999999999999997544322111010 01111235699999999998543 4699999999999999999999999
Q ss_pred cHHHHHHHHHhCCCCCCcEEEECCeeCCCCCHHHHhhhceEEccCCCcChhcHHHHHhcCCCCCCHHHHHHHHHHhchHH
Q 001411 245 GKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNILLGKEDASMDRVIEAAKAANAHS 324 (1082)
Q Consensus 245 GKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~ 324 (1082)
|||||+++|+|+++|++|+|.+||.++++++.+++|++|+||||+|++|++||+|||.++.|+.++++++++++.+++.+
T Consensus 378 GKSTLlklL~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i~~~~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~~~~l~~~~l~~ 457 (576)
T TIGR02204 378 GKSTLFQLLLRFYDPQSGRILLDGVDLRQLDPAELRARMALVPQDPVLFAASVMENIRYGRPDATDEEVEAAARAAHAHE 457 (576)
T ss_pred CHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHHhceEEccCCccccccHHHHHhcCCCCCCHHHHHHHHHHcCcHH
Confidence 99999999999999999999999999999999999999999999999999999999999998888999999999999999
Q ss_pred HHhcCCCCccccccCCCCCCChHHHHHHHHHHhcccCCCeeEEeCcccCCCHHHHHHHHHHHHHHcCCCeEEEEccCccc
Q 001411 325 FVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLST 404 (1082)
Q Consensus 325 ~i~~lp~g~~t~~g~~g~~LSgGqkqri~lARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~vtH~~~~ 404 (1082)
+++++|+|++|.+|++|.+||||||||++||||++++|+++|||||||+||+++++.+.+.++++.+++|+|+||||++.
T Consensus 458 ~i~~l~~gl~t~i~~~g~~LSgGq~Qrl~laRal~~~~~ililDEpts~lD~~~~~~i~~~l~~~~~~~t~IiitH~~~~ 537 (576)
T TIGR02204 458 FISALPEGYDTYLGERGVTLSGGQRQRIAIARAILKDAPILLLDEATSALDAESEQLVQQALETLMKGRTTLIIAHRLAT 537 (576)
T ss_pred HHHhCCCCCCceeCCCCCcCCHHHHHHHHHHHHHHhCCCeEEEeCcccccCHHHHHHHHHHHHHHhCCCEEEEEecchHH
Confidence 99999999999999999999999999999999999999999999999999999999999999998888999999999999
Q ss_pred cccCCEEEEEeCCEEEEecCchhhhhcCchhHHHHHhh
Q 001411 405 VRDVDTIMVLKNGQVVESGTHVDLISKGGEYAALVNLQ 442 (1082)
Q Consensus 405 ~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~ 442 (1082)
++.+|+|++|++|++++.|+|++++++++.|+++++.+
T Consensus 538 ~~~~d~vi~l~~g~~~~~g~~~~l~~~~~~~~~l~~~~ 575 (576)
T TIGR02204 538 VLKADRIVVMDQGRIVAQGTHAELIAKGGLYARLARLQ 575 (576)
T ss_pred HHhCCEEEEEECCEEEeeecHHHHHHcCChHHHHHhhc
Confidence 99999999999999999999999999999999987643
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. |
| >TIGR02868 CydC thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-68 Score=646.29 Aligned_cols=396 Identities=25% Similarity=0.346 Sum_probs=346.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcch
Q 001411 5 HALRYLSQFFVGFAVGFTSVWQLTLLTLAVVPLIAVAGGAYT-ITMSTLSEKGEAAYGEAGKVAEEIISQVRAVYAFVGE 83 (1082)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~l~l~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e 83 (1082)
.++..+..+++.++++++++|.+++++++.+|++.++...+. +..++..++.++..++..+.+.|.++|+++||+|++|
T Consensus 133 ~~~~~~~~~~~~~~~l~~~~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~g~~~ik~~~~~ 212 (529)
T TIGR02868 133 PLVVALVVGSAAVAAIALLSVPAALVLAAGLLLAGFVAPLVSLRAARAAEVALARLRSQLYQQLTDALDGAADLVAYGAL 212 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhccHHHHHHcCCh
Confidence 445556666777788899999999998888787766554444 4445556677778889999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHH
Q 001411 84 AKAIESYSHSLKEALKQGKKSGVAKGIGVGLTYGLLFCAWALLLWYAGILVRHGDTNGGKAFTTIINVIFSGFALGQAAP 163 (1082)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~l~~g~~~~~~~~~~~~~~~l~~~~~ 163 (1082)
+.+.++|++..++..+...+..+..+....+..++..+..++++++|++++.+|.+|+|.+.+++.+......|+..+..
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~t~g~l~~~~~~~~~~~~~~~~l~~ 292 (529)
T TIGR02868 213 DPALAQVEAADRELLAAERRAARATGLGAAAQLLAAGLAVLGALWAGGPAVADGTLAPATLAVLVLLPLAAFEAFAPLPA 292 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999888888888888777777777777778888999999999999999888777666666778888888
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCCCCcEEEEEEEEECCCCCCccccceeEEEeCCCEEEEEcCCC
Q 001411 164 NLAAIAKGKAAAANIISIIKENSHSSERPGDDGITLPKLAGQIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSG 243 (1082)
Q Consensus 164 ~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sG 243 (1082)
.+..+.++..+.+|+.++++.+++.++.........+...+.|+++||+|+|++++ ++|+|+||+++|||+++||||||
T Consensus 293 ~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~~~~~~~~~~~~~I~~~~vsf~Y~~~~-~vL~~isl~i~~G~~vaIvG~SG 371 (529)
T TIGR02868 293 AAQALTRVRAAAERIEEVTGAKGPRPEGVVPAAGALGLGKPTLELRDLSFGYPGSP-PVLDGVSLDLPPGERVAILGPSG 371 (529)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCcCCCCCCCCcccCCCCceEEEEEEEEecCCCC-ceeecceEEEcCCCEEEEECCCC
Confidence 89999999999999999997654322111110111111235699999999998643 59999999999999999999999
Q ss_pred CcHHHHHHHHHhCCCCCCcEEEECCeeCCCCCHHHHhhhceEEccCCCcChhcHHHHHhcCCCCCCHHHHHHHHHHhchH
Q 001411 244 SGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNILLGKEDASMDRVIEAAKAANAH 323 (1082)
Q Consensus 244 sGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~ 323 (1082)
||||||+++|+|+|+|++|+|.+||+|++++ .+++|++|+||||+|++|++||+|||.+|.|+.++++++++|+.++++
T Consensus 372 sGKSTLl~lL~g~~~p~~G~I~i~g~~i~~~-~~~lr~~i~~V~Q~~~lF~~TI~eNI~~g~~~~~~e~i~~al~~a~l~ 450 (529)
T TIGR02868 372 SGKSTLLMLLTGLLDPLQGEVTLDGVSVSSL-QDELRRRISVFAQDAHLFDTTVRDNLRLGRPDATDEELWAALERVGLA 450 (529)
T ss_pred CCHHHHHHHHhcCCCCCCcEEEECCEEhhhH-HHHHHhheEEEccCcccccccHHHHHhccCCCCCHHHHHHHHHHcCCH
Confidence 9999999999999999999999999999999 999999999999999999999999999999988999999999999999
Q ss_pred HHHhcCCCCccccccCCCCCCChHHHHHHHHHHhcccCCCeeEEeCcccCCCHHHHHHHHHHHHHHcCCCeEEEEccCc
Q 001411 324 SFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRL 402 (1082)
Q Consensus 324 ~~i~~lp~g~~t~~g~~g~~LSgGqkqri~lARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~vtH~~ 402 (1082)
+++.++|+|+||.+||+|.+||||||||++||||++++|+|+|||||||+||+++|+.+++.+.++.+++|+|+||||+
T Consensus 451 ~~i~~lp~GldT~ige~G~~LSGGQrQRiaiARall~~~~iliLDE~TSaLD~~te~~I~~~l~~~~~~~TvIiItHrl 529 (529)
T TIGR02868 451 DWLRSLPDGLDTVLGEGGARLSGGERQRLALARALLADAPILLLDEPTEHLDAGTESELLEDLLAALSGKTVVVITHHL 529 (529)
T ss_pred HHHHhCcccccchhccccCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEecCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999988899999999995
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. |
| >TIGR01192 chvA glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-67 Score=641.24 Aligned_cols=433 Identities=32% Similarity=0.477 Sum_probs=384.7
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHH
Q 001411 7 LRYLSQFFVGFAVGFTSVWQLTLLTLAVVPLIAVAGGAYTITMSTLSEKGEAAYGEAGKVAEEIISQVRAVYAFVGEAKA 86 (1082)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~ 86 (1082)
+..+..+++.++++++++|.+++++++++|+++++..++.++.++..++.++..++..+.+.|.++|+++||+|+.++.+
T Consensus 138 ~~~~~~~~~~~~~l~~~~~~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~~~~~ 217 (585)
T TIGR01192 138 LATFVALFLLIPTAFAMDWRLSIVLMVLGILYILIAKLVMQRTKNGQAAVEHHYHNVFKHVSDSISNVSVVHSYNRIEAE 217 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHhcccHHH
Confidence 33444455555677899999999999999998888888888888888888888899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001411 87 IESYSHSLKEALKQGKKSGVAKGIGVGLTYGLLFCAWALLLWYAGILVRHGDTNGGKAFTTIINVIFSGFALGQAAPNLA 166 (1082)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~l~~g~~~~~~~~~~~~~~~l~~~~~~~~ 166 (1082)
.+++.+..++..+...+..+..+....+..++..+..++++++|++++.+|.+++|.+++++.+......|+..+...+.
T Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~v~~g~it~g~l~a~~~~~~~l~~~~~~l~~~~~ 297 (585)
T TIGR01192 218 TSALKQFTNNLLSAQYPVLDWWALASGLNRMASTISMMCILVIGTVLVIKGELSVGEVIAFIGFANLLIGRLDQMSGFIT 297 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999998888887777777766666666666677777888999999999999999988877666666778888999999
Q ss_pred HHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCCCCcEEEEEEEEECCCCCCccccceeEEEeCCCEEEEEcCCCCcH
Q 001411 167 AIAKGKAAAANIISIIKENSHSSERPGDDGITLPKLAGQIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGK 246 (1082)
Q Consensus 167 ~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGK 246 (1082)
.+..++.+.+|+.++++.+++.++. ......+...+.++++||+|+|+++ +++|+|+||++++||+++|+|||||||
T Consensus 298 ~~~~~~~~~~ri~~~~~~~~~~~~~--~~~~~~~~~~~~i~~~~v~~~y~~~-~~~l~~i~~~i~~G~~~~ivG~sGsGK 374 (585)
T TIGR01192 298 QIFEARAKLEDFFDLEDSVFQREEP--ADAPELPNVKGAVEFRHITFEFANS-SQGVFDVSFEAKAGQTVAIVGPTGAGK 374 (585)
T ss_pred HHHHHHHHHHHHHHHHcCCccccCC--ccCCCCCCCCCeEEEEEEEEECCCC-CccccceeEEEcCCCEEEEECCCCCCH
Confidence 9999999999999998754332111 1101112234569999999999853 358999999999999999999999999
Q ss_pred HHHHHHHHhCCCCCCcEEEECCeeCCCCCHHHHhhhceEEccCCCcChhcHHHHHhcCCCCCCHHHHHHHHHHhchHHHH
Q 001411 247 STIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNILLGKEDASMDRVIEAAKAANAHSFV 326 (1082)
Q Consensus 247 STll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i 326 (1082)
|||+++|+|+++|++|+|.+||.++++++.+++|+.++||+|+|++|++|++|||.++.++.++++++++++.+++++++
T Consensus 375 STL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~a~~~~~~~~~i 454 (585)
T TIGR01192 375 TTLINLLQRVYDPTVGQILIDGIDINTVTRESLRKSIATVFQDAGLFNRSIRENIRLGREGATDEEVYEAAKAAAAHDFI 454 (585)
T ss_pred HHHHHHHccCCCCCCCEEEECCEEhhhCCHHHHHhheEEEccCCccCcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHH
Confidence 99999999999999999999999999999999999999999999999999999999998888899999999999999999
Q ss_pred hcCCCCccccccCCCCCCChHHHHHHHHHHhcccCCCeeEEeCcccCCCHHHHHHHHHHHHHHcCCCeEEEEccCccccc
Q 001411 327 EGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVR 406 (1082)
Q Consensus 327 ~~lp~g~~t~~g~~g~~LSgGqkqri~lARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~vtH~~~~~~ 406 (1082)
.++|+|++|.+|++|.+||||||||++|||||+++|+++|||||||+||+++++.+.+.|.++.+++|+|+||||++.++
T Consensus 455 ~~l~~g~~t~~~~~~~~LSgGq~qrl~lARall~~p~ililDEpts~LD~~~~~~i~~~l~~~~~~~tvI~isH~~~~~~ 534 (585)
T TIGR01192 455 LKRSNGYDTLVGERGNRLSGGERQRLAIARAILKNAPILVLDEATSALDVETEARVKNAIDALRKNRTTFIIAHRLSTVR 534 (585)
T ss_pred HhccccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEEcChHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999998888999999999999999
Q ss_pred cCCEEEEEeCCEEEEecCchhhhhcCchhHHHHHhh
Q 001411 407 DVDTIMVLKNGQVVESGTHVDLISKGGEYAALVNLQ 442 (1082)
Q Consensus 407 ~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~ 442 (1082)
.||+|++|++|++++.|+|++++++++.|++++..+
T Consensus 535 ~~d~i~~l~~G~i~~~g~~~~l~~~~~~y~~l~~~~ 570 (585)
T TIGR01192 535 NADLVLFLDQGRLIEKGSFQELIQKDGRFYKLLRRS 570 (585)
T ss_pred cCCEEEEEECCEEEEECCHHHHHHCCChHHHHHHhC
Confidence 999999999999999999999999999999998755
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related. |
| >COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-69 Score=576.87 Aligned_cols=421 Identities=33% Similarity=0.498 Sum_probs=374.5
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHHHH
Q 001411 18 AVGFTSVWQLTLLTLAVVPLIAVAGGAYTITMSTLSEKGEAAYGEAGKVAEEIISQVRAVYAFVGEAKAIESYSHSLKEA 97 (1082)
Q Consensus 18 ~~~~~~~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~ 97 (1082)
++...++|+.+++.++.+.++.++......+.....++..++.+++++...++|-+.+++|.||.|+.+..+|.+.++.+
T Consensus 76 i~~~~~~~~f~~~t~vtv~lY~~ftv~~s~wr~~~rr~~n~aDs~a~~~aidsLlnfEtvk~F~ne~~e~~r~~~~~~~Y 155 (497)
T COG5265 76 ILWRVYGWWFALTTLVTVILYLLFTVIVSDWRTDFRRLMNNADSDANAKAIDSLLNFETVKYFGNEEYEAVRYDHALETY 155 (497)
T ss_pred HHHhhcccHHHHHHHHHHHHHHHhheeehhhhHHHHHhhhhhhhHHHHHHHHHHhhhhheeecCchhhhhhhcCchHHHH
Confidence 34456789999988888888887777777776677777788888999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001411 98 LKQGKKSGVAKGIGVGLTYGLLFCAWALLLWYAGILVRHGDTNGGKAFTTIINVIFSGFALGQAAPNLAAIAKGKAAAAN 177 (1082)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~l~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~r 177 (1082)
.+...|.....++.......+.......+...++..+..|++|+|++...-..+...+.|+..+......+.+++.-.++
T Consensus 156 ~~a~~k~~~Sl~~Ln~gQ~~I~~~~l~~~m~~s~~~v~~g~~TvgD~V~~Nall~qls~Plnflg~~Yrei~q~ltdme~ 235 (497)
T COG5265 156 EKAAIKVHVSLLVLNFGQTAIFSTGLRVMMTMSALGVEEGQLTVGDLVNVNALLFQLSIPLNFLGFSYREIRQALTDMEK 235 (497)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhcHHHHhhccCCchhHHhHHHHHhhhhhhhhhhHHHHHHHHHhhhhHHH
Confidence 98888876655555555555555555666777888899999999997776666677778888888899999999999999
Q ss_pred HHHHHhccCCCCCCCCCCCCCCCCCCCcEEEEEEEEECCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHHhCC
Q 001411 178 IISIIKENSHSSERPGDDGITLPKLAGQIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLY 257 (1082)
Q Consensus 178 i~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~ 257 (1082)
++++++.+.+..+.+..... .+...+.+.|+||+|.|..+ +++|+++||++++|+++++|||||+||||++++|.++|
T Consensus 236 mfdLl~~~~~v~d~pda~~L-~~~~~g~v~F~~V~F~y~~~-r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFy 313 (497)
T COG5265 236 MFDLLDVEAEVSDAPDAPPL-WPVRLGAVAFINVSFAYDPR-RPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFY 313 (497)
T ss_pred HHHhhccchhhccCCCCccc-cccccceEEEEEEEeecccc-chhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHh
Confidence 99999776554322111111 11335679999999999654 46999999999999999999999999999999999999
Q ss_pred CCCCcEEEECCeeCCCCCHHHHhhhceEEccCCCcChhcHHHHHhcCCCCCCHHHHHHHHHHhchHHHHhcCCCCccccc
Q 001411 258 EPTSGKILLDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQV 337 (1082)
Q Consensus 258 ~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~lp~g~~t~~ 337 (1082)
++++|.|.+||+|+++...+.+|+.||.||||..|||+|+..||.+|+|.++++++..+++.++++++|+.+|+||+|.|
T Consensus 314 D~~sG~I~id~qdir~vtq~slR~aIg~VPQDtvLFNDti~yni~ygr~~at~eev~aaa~~aqi~~fi~~lP~gy~t~V 393 (497)
T COG5265 314 DVNSGSITIDGQDIRDVTQQSLRRAIGIVPQDTVLFNDTIAYNIKYGRPDATAEEVGAAAEAAQIHDFIQSLPEGYDTGV 393 (497)
T ss_pred CCcCceEEEcchhHHHhHHHHHHHHhCcCcccceehhhhHHHHHhccCccccHHHHHHHHHHhhhhHHHHhCchhhhccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCChHHHHHHHHHHhcccCCCeeEEeCcccCCCHHHHHHHHHHHHHHcCCCeEEEEccCccccccCCEEEEEeCC
Q 001411 338 GEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRDVDTIMVLKNG 417 (1082)
Q Consensus 338 g~~g~~LSgGqkqri~lARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~vtH~~~~~~~~d~i~~l~~G 417 (1082)
||+|-.|||||||||||||+++++|+||+|||+||+||.+||+.++..|++..+++|.++|+||++++-.||+|+||++|
T Consensus 394 gerglklSggekqrvaiar~ilk~p~il~~deatsaldt~te~~iq~~l~~~~~~rttlviahrlsti~~adeiivl~~g 473 (497)
T COG5265 394 GERGLKLSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQAALREVSAGRTTLVIAHRLSTIIDADEIIVLDNG 473 (497)
T ss_pred chheeeccCchHHHHHHHHHHhcCCCEEEEehhhhHhhhhHHHHHHHHHHHHhCCCeEEEEeehhhhccCCceEEEeeCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEecCchhhhhcCchhHHHHH
Q 001411 418 QVVESGTHVDLISKGGEYAALVN 440 (1082)
Q Consensus 418 ~i~~~g~~~~l~~~~~~~~~~~~ 440 (1082)
+|+|.|+|++|++.+|.|++||.
T Consensus 474 ~i~erg~h~~ll~~~g~ya~mw~ 496 (497)
T COG5265 474 RIVERGTHEELLAAGGLYAEMWR 496 (497)
T ss_pred EEEecCcHHHHHHcCChHHHHhc
Confidence 99999999999999999999984
|
|
| >PRK11819 putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-68 Score=641.75 Aligned_cols=482 Identities=22% Similarity=0.330 Sum_probs=335.0
Q ss_pred cEEEEEEEEECCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHHhCCCCCCcEEEECCeeCCCCCHHHHhhhce
Q 001411 205 QIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMG 284 (1082)
Q Consensus 205 ~i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 284 (1082)
.|+++|++++|++ ..++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+++. ..||
T Consensus 6 ~l~i~~l~~~y~~-~~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p~~G~i~~~~~-----------~~i~ 73 (556)
T PRK11819 6 IYTMNRVSKVVPP-KKQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFEGEARPAPG-----------IKVG 73 (556)
T ss_pred EEEEeeEEEEeCC-CCeeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCC-----------CEEE
Confidence 4899999999972 135999999999999999999999999999999999999999999999752 4699
Q ss_pred EEccCCCcChh-cHHHHHhcCCCC----------------CC----------HHHHHHHHHH-------hchHHHHhcCC
Q 001411 285 LVSQEPALFAT-SIANNILLGKED----------------AS----------MDRVIEAAKA-------ANAHSFVEGLP 330 (1082)
Q Consensus 285 ~v~Q~~~l~~~-ti~~ni~~g~~~----------------~~----------~~~~~~~~~~-------~~~~~~i~~lp 330 (1082)
||+|+|.+++. |++||+.++... .. ..++.+.+.. ..+.+.++.+
T Consensus 74 ~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~- 152 (556)
T PRK11819 74 YLPQEPQLDPEKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDAL- 152 (556)
T ss_pred EEecCCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHhC-
Confidence 99999999876 999999875310 00 0011111111 1122233333
Q ss_pred CCccccccCCCCCCChHHHHHHHHHHhcccCCCeeEEeCcccCCCHHHHHHHHHHHHHHcCCCeEEEEccCcccccc-CC
Q 001411 331 DGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRD-VD 409 (1082)
Q Consensus 331 ~g~~t~~g~~g~~LSgGqkqri~lARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~vtH~~~~~~~-~d 409 (1082)
|++ .......+|||||||||+|||||+.+|++||||||||+||+.+..++.+.|+++. .|+|+|||+++.+.. ||
T Consensus 153 -gl~-~~~~~~~~LSgGqkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~~L~~~~--~tviiisHd~~~~~~~~d 228 (556)
T PRK11819 153 -RCP-PWDAKVTKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHDYP--GTVVAVTHDRYFLDNVAG 228 (556)
T ss_pred -CCC-cccCchhhcCHHHHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHHHHHhCC--CeEEEEeCCHHHHHhhcC
Confidence 332 2345567899999999999999999999999999999999999999999998863 599999999999875 89
Q ss_pred EEEEEeCCEEE-EecCchhhhhcCchhHHHHHhhhccccCCCCcccCCCCCCCCCCCCCCCCcccchhhhhhhhhhhccC
Q 001411 410 TIMVLKNGQVV-ESGTHVDLISKGGEYAALVNLQSSEHLSNPSSICYSGSSRYSSFRDFPSSRRYDVEFESSKRRELQSS 488 (1082)
Q Consensus 410 ~i~~l~~G~i~-~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 488 (1082)
+|++|++|+++ ..|++++..+....- . .. .. ...+
T Consensus 229 ~i~~l~~g~i~~~~g~~~~~~~~~~~~--~-~~------------------------------------~~---~~~~-- 264 (556)
T PRK11819 229 WILELDRGRGIPWEGNYSSWLEQKAKR--L-AQ------------------------------------EE---KQEA-- 264 (556)
T ss_pred eEEEEeCCEEEEecCCHHHHHHHHHHH--H-HH------------------------------------HH---HHHH--
Confidence 99999999986 667666543211000 0 00 00 0000
Q ss_pred CCCCCCchhHHHHHHHhcchhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCchhhHhHHHHHHHHHHHHHHHHHH
Q 001411 489 DQSFAPSPSIWELLKLNAAEWPYAVLGSVGAILAGMEAPLFALGITHILTAFYSPHDSQIKRVVDQVALIFVGLAVVTIP 568 (1082)
Q Consensus 489 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 568 (1082)
...
T Consensus 265 ----------------------------------------------------------~~~------------------- 267 (556)
T PRK11819 265 ----------------------------------------------------------ARQ------------------- 267 (556)
T ss_pred ----------------------------------------------------------HHH-------------------
Confidence 000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccccccCCChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001411 569 VYLLQHYFYTLMGEHLTARVRLSMFSAILSNEIGWFDLDENNTGLLISTLAADATLVRSALADRLSIIVQNVALTVTAFV 648 (1082)
Q Consensus 569 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~l~~~~~ffd~~~~~~G~il~r~s~D~~~i~~~~~~~l~~~~~~~~~~~~~~~ 648 (1082)
..++ ++.. |.+. .+.+
T Consensus 268 -----------------~~~~-~~~~--------~~~~--~~~~------------------------------------ 283 (556)
T PRK11819 268 -----------------KALK-RELE--------WVRQ--SPKA------------------------------------ 283 (556)
T ss_pred -----------------HHHH-HHHH--------HHHH--hhhh------------------------------------
Confidence 0000 0000 0000 0000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHccHHHHHHcCcHHHHHHHHHHHHhhHH
Q 001411 649 IAFILSWRLAAVVAASLPLLIGAFVAEQLFLKGFGGDYNRAYSRATSVAREAIANIRTVAAYGIEKRISIQFASELSQPN 728 (1082)
Q Consensus 649 ~~~~~~~~l~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~tIra~~~~~~~~~~~~~~~~~~~ 728 (1082)
+ . . ...
T Consensus 284 -----------------------------------------------------------~-----------~--~--~~~ 289 (556)
T PRK11819 284 -----------------------------------------------------------R-----------Q--A--KSK 289 (556)
T ss_pred -----------------------------------------------------------h-----------H--H--HHH
Confidence 0 0 0 000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001411 729 KQALLRGHISGFGYGVSQLLSLCSYALGLWYASVLIKQKGSNFGDIMKSFMVLIITALAVAETLALAPDIVKGSQALGPV 808 (1082)
Q Consensus 729 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri 808 (1082)
+ .....++.
T Consensus 290 ~-----------------------------------------------------------------------~~~~~~~~ 298 (556)
T PRK11819 290 A-----------------------------------------------------------------------RLARYEEL 298 (556)
T ss_pred H-----------------------------------------------------------------------HHHHHHHh
Confidence 0 00000000
Q ss_pred HHhhcccccCCC-CCCC-CcccccccccEEEEeEEEECCCCCCcccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHhcc
Q 001411 809 FGILYRKTAIQP-DDPA-SKEVTEIKGNIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRF 886 (1082)
Q Consensus 809 ~~~~~~~~~~~~-~~~~-~~~~~~~~g~I~~~~Vs~~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl 886 (1082)
.+. .+.+.+. .... .......+..|+++||+++|+ +.++|+|+||+|++||++||+|+||||||||+++|.|+
T Consensus 299 ~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~---~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~ 373 (556)
T PRK11819 299 LSE--EYQKRNETNEIFIPPGPRLGDKVIEAENLSKSFG---DRLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQ 373 (556)
T ss_pred hcc--cccccCCCceeecCCCCCCCCeEEEEEeEEEEEC---CeeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 000 0000000 0000 000001123599999999996 34699999999999999999999999999999999999
Q ss_pred ccCCccEEEECCccCCCCCHHHHhcceEEEcccC-cccc-ccHHHHhccCCCC----CCHHHHHHHHHHhcHHHHHhhCc
Q 001411 887 YDPISGTVLIDGYDIRTLNLRSLRRKIGLVQQEP-ALFS-TTIYENIKYGNED----ASEIELMKATKAANAHGFISRMP 960 (1082)
Q Consensus 887 ~~p~~G~I~idG~di~~i~~~~lR~~i~~VpQdp-~Lf~-gTIreNl~~~~~~----~~d~ei~~al~~a~l~~~i~~lp 960 (1082)
++|++|+|.+++ ++ +|+|+||++ .++. -|+++|+.++... ..+.+..++++..++.+
T Consensus 374 ~~p~~G~i~~~~-~~----------~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~------ 436 (556)
T PRK11819 374 EQPDSGTIKIGE-TV----------KLAYVDQSRDALDPNKTVWEEISGGLDIIKVGNREIPSRAYVGRFNFKG------ 436 (556)
T ss_pred CCCCCeEEEECC-ce----------EEEEEeCchhhcCCCCCHHHHHHhhcccccccccHHHHHHHHHhCCCCh------
Confidence 999999999954 21 599999997 5654 5999999864321 11223333444443321
Q ss_pred ccccccccCCCCCCChhHHHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhc-cC
Q 001411 961 EGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLMEGRTTIMVAHRLSTIRN-AD 1039 (1082)
Q Consensus 961 ~gldt~v~e~G~~LSgGQrQrlaLARAlL~~~~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~-~D 1039 (1082)
.........||||||||++||||++.+|++|||||||++||+.+.+.+.+.|++. + .|+|+|||+++.+.. ||
T Consensus 437 ----~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~-~-~tvi~vtHd~~~~~~~~d 510 (556)
T PRK11819 437 ----GDQQKKVGVLSGGERNRLHLAKTLKQGGNVLLLDEPTNDLDVETLRALEEALLEF-P-GCAVVISHDRWFLDRIAT 510 (556)
T ss_pred ----hHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhC-C-CeEEEEECCHHHHHHhCC
Confidence 0122334579999999999999999999999999999999999999999999986 3 499999999999865 99
Q ss_pred EEEEEeC-CEEEE-ecChHHHhhh
Q 001411 1040 KIAVLQQ-GKVAE-IGSHEQLLRK 1061 (1082)
Q Consensus 1040 rI~Vl~~-G~ive-~G~~~eLl~~ 1061 (1082)
+|++|++ |++.+ .|++++++++
T Consensus 511 ~i~~l~~~g~~~~~~g~~~~~~~~ 534 (556)
T PRK11819 511 HILAFEGDSQVEWFEGNFQEYEED 534 (556)
T ss_pred EEEEEECCCeEEEecCCHHHHHHH
Confidence 9999996 88874 6888888764
|
|
| >PLN03232 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-66 Score=680.87 Aligned_cols=472 Identities=18% Similarity=0.282 Sum_probs=381.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCccccccCCChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001411 578 TLMGEHLTARVRLSMFSAILSNEIGWFDLDENNTGLLISTLAADATLVRSALADRLSIIVQNVALTVTAFVIAFILSWRL 657 (1082)
Q Consensus 578 ~~~~~~~~~~l~~~l~~~~l~~~~~ffd~~~~~~G~il~r~s~D~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l 657 (1082)
.+.+.++...++..+|+++++.+..+|+. .++|+++|++++|++.+++.+ ..+..+....+.+++++++++ +.+
T Consensus 366 ~~~~~~ir~~l~~~i~~k~l~l~~~~~~~--~~~G~i~n~ls~Dv~~i~~~~-~~l~~l~~~p~~ii~~~~~l~---~~l 439 (1495)
T PLN03232 366 GRVGFRLRSTLVAAIFHKSLRLTHEARKN--FASGKVTNMITTDANALQQIA-EQLHGLWSAPFRIIVSMVLLY---QQL 439 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCChhhcCC--CCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH---HHH
Confidence 56778888888889999999999998864 789999999999999999976 344444444444433333222 223
Q ss_pred HHHHHHHHHHHH---HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHccHHHHHHcCcHHHHHHHHHHHHhhHHHHHHHH
Q 001411 658 AAVVAASLPLLI---GAFVAEQLFLKGFGGDYNRAYSRATSVAREAIANIRTVAAYGIEKRISIQFASELSQPNKQALLR 734 (1082)
Q Consensus 658 ~~~~l~~~p~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~tIra~~~~~~~~~~~~~~~~~~~~~~~~~ 734 (1082)
++..++.+++++ .+..+..+..++..++..+...+..+.+.|.++|+++||+|++|+.+.+++.+..++..+...+.
T Consensus 440 g~~~l~~~~v~~l~~pl~~~~~~~~~~~~~~~~~~~d~r~~~~~E~l~gi~~IK~~~~e~~~~~~~~~~r~~e~~~~~~~ 519 (1495)
T PLN03232 440 GVASLFGSLILFLLIPLQTLIVRKMRKLTKEGLQWTDKRVGIINEILASMDTVKCYAWEKSFESRIQGIRNEELSWFRKA 519 (1495)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 332222222211 12233445555566666677777889999999999999999999999999998877777666665
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 001411 735 GHISGFGYGVSQLLSLCSYALGLWYASVLIKQKGSNFGDIMKSFMVLIITALAVAETLALAPDIVKGSQALGPVFGILYR 814 (1082)
Q Consensus 735 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~~~~ 814 (1082)
....++...+..... ..+...+++.+++..+.++.+.+++++........++..+...+..+..+..+.+|+.++++.
T Consensus 520 ~~~~~~~~~~~~~~~--~~~~~~~fg~~~v~~~~lt~g~vf~~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~~L~~ 597 (1495)
T PLN03232 520 QLLSAFNSFILNSIP--VVVTLVSFGVFVLLGGDLTPARAFTSLSLFAVLRSPLNMLPNLLSQVVNANVSLQRIEELLLS 597 (1495)
T ss_pred HHHHHHHHHHHHHHH--HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 555444333222211 123346778888888899999999988888888888888888889999999999999999876
Q ss_pred cccCCCCCCCCcccccccccEEEEeEEEECCCCCCcccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEE
Q 001411 815 KTAIQPDDPASKEVTEIKGNIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTV 894 (1082)
Q Consensus 815 ~~~~~~~~~~~~~~~~~~g~I~~~~Vs~~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I 894 (1082)
+++.....+ +..+..+.|+|+||+|+|+.+++.++|+|+||+|++||+++|||+||||||||+++|+|+++|++|.+
T Consensus 598 ~~~~~~~~~---~~~~~~~~I~~~~vsF~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~G~i 674 (1495)
T PLN03232 598 EERILAQNP---PLQPGAPAISIKNGYFSWDSKTSKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETSS 674 (1495)
T ss_pred ccccccccC---CcCCCCCcEEEEeeEEEcCCCCCCceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCcccCCCE
Confidence 543211111 11122357999999999985445689999999999999999999999999999999999999999876
Q ss_pred EECCccCCCCCHHHHhcceEEEcccCccccccHHHHhccCCCCCCHHHHHHHHHHhcHHHHHhhCcccccccccCCCCCC
Q 001411 895 LIDGYDIRTLNLRSLRRKIGLVQQEPALFSTTIYENIKYGNEDASEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQL 974 (1082)
Q Consensus 895 ~idG~di~~i~~~~lR~~i~~VpQdp~Lf~gTIreNl~~~~~~~~d~ei~~al~~a~l~~~i~~lp~gldt~v~e~G~~L 974 (1082)
. .+|++|+||||+|.||+|||||||.+|.+ .++++++++++.++++++++.+|+|+||.|||+|.+|
T Consensus 675 ~------------~~~~~Iayv~Q~p~Lf~gTIreNI~fg~~-~~~e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G~~L 741 (1495)
T PLN03232 675 V------------VIRGSVAYVPQVSWIFNATVRENILFGSD-FESERYWRAIDVTALQHDLDLLPGRDLTEIGERGVNI 741 (1495)
T ss_pred E------------EecCcEEEEcCccccccccHHHHhhcCCc-cCHHHHHHHHHHhCCHHHHHhCCCCCCceecCCCccc
Confidence 3 46889999999999999999999999874 7899999999999999999999999999999999999
Q ss_pred ChhHHHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHH-HHHHhcCCceEEEEecCchhhhccCEEEEEeCCEEEEec
Q 001411 975 SGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQE-ALDKLMEGRTTIMVAHRLSTIRNADKIAVLQQGKVAEIG 1053 (1082)
Q Consensus 975 SgGQrQrlaLARAlL~~~~ILlLDEaTS~LD~~te~~I~~-~l~~~~~~~TvI~IaHrl~ti~~~DrI~Vl~~G~ive~G 1053 (1082)
|||||||||||||++++|+|+|||||||+||++|++.|.+ .++...+++|+|+||||++++..||+|++|++|+|+|+|
T Consensus 742 SGGQkQRIaLARAly~~~~IlLLDEptSaLD~~t~~~I~~~~l~~~l~~kT~IlvTH~~~~l~~aD~Ii~L~~G~i~~~G 821 (1495)
T PLN03232 742 SGGQKQRVSMARAVYSNSDIYIFDDPLSALDAHVAHQVFDSCMKDELKGKTRVLVTNQLHFLPLMDRIILVSEGMIKEEG 821 (1495)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhhcCCEEEEEECChhhHHhCCEEEEEeCCEEEEec
Confidence 9999999999999999999999999999999999998855 466666899999999999999999999999999999999
Q ss_pred ChHHHhhhccchHHHHHHHhh
Q 001411 1054 SHEQLLRKENGIYKQLIRLQQ 1074 (1082)
Q Consensus 1054 ~~~eLl~~~~g~f~~l~~~~~ 1074 (1082)
+|+||++ +++.|+++++.+.
T Consensus 822 t~~eL~~-~~~~~~~l~~~~~ 841 (1495)
T PLN03232 822 TFAELSK-SGSLFKKLMENAG 841 (1495)
T ss_pred CHHHHHh-cchhHHHHHHhcc
Confidence 9999997 6789999987654
|
|
| >TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-67 Score=634.48 Aligned_cols=410 Identities=26% Similarity=0.393 Sum_probs=368.1
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHH
Q 001411 16 GFAVGFTSVWQLTLLTLAVVPLIAVAGGAYTITMSTLSEKGEAAYGEAGKVAEEIISQVRAVYAFVGEAKAIESYSHSLK 95 (1082)
Q Consensus 16 ~~~~~~~~~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~ 95 (1082)
.++++++++|.+++++++.+|+++++..++.+..++..++.++..++..+.+.|.++|+++||.|++|+.+.++|.+..+
T Consensus 132 ~~~~l~~~~~~l~li~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~ 211 (544)
T TIGR01842 132 YLLVCFLLHPWIGILALGGAVVLVGLALLNNRATKKPLKEATEASIRANNLADSALRNAEVIEAMGMMGNLTKRWGRFHS 211 (544)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHhcHHHHHHcCchHHHHHHHHHHHH
Confidence 34567889999999888888887777777778888888888888999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001411 96 EALKQGKKSGVAKGIGVGLTYGLLFCAWALLLWYAGILVRHGDTNGGKAFTTIINVIFSGFALGQAAPNLAAIAKGKAAA 175 (1082)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~l~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~a~ 175 (1082)
+..+...+.....+....+..++..+..++++++|++++.+|.+|+|.+++++.+......|+..+...+..+.+++.+.
T Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~it~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~~~ 291 (544)
T TIGR01842 212 KYLSAQSAASDRAGMLSNLSKYFRIVLQSLVLGLGAYLAIDGEITPGMMIAGSILVGRALAPIDGAIGGWKQFSGARQAY 291 (544)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888877777777766666666666777788999999999999999998887777777789999999999999999999
Q ss_pred HHHHHHHhccCCCCCCCCCCCCCCCCCCCcEEEEEEEEECCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHHh
Q 001411 176 ANIISIIKENSHSSERPGDDGITLPKLAGQIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQR 255 (1082)
Q Consensus 176 ~ri~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g 255 (1082)
+|+.++++.+++.+ . . ...+...+.++++|++|+|++.++++|+|+||+++|||+++|+||||||||||+++|+|
T Consensus 292 ~ri~~~l~~~~~~~-~--~--~~~~~~~~~i~~~~v~~~y~~~~~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g 366 (544)
T TIGR01842 292 KRLNELLANYPSRD-P--A--MPLPEPEGHLSVENVTIVPPGGKKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVG 366 (544)
T ss_pred HHHHHHHhCCcccc-C--C--CCCCCCCCeEEEEEEEEEcCCCCccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 99999997654322 1 1 11122335799999999998654569999999999999999999999999999999999
Q ss_pred CCCCCCcEEEECCeeCCCCCHHHHhhhceEEccCCCcChhcHHHHHhcCCCCCCHHHHHHHHHHhchHHHHhcCCCCccc
Q 001411 256 LYEPTSGKILLDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQT 335 (1082)
Q Consensus 256 ~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~lp~g~~t 335 (1082)
+++|++|+|.+||+++.+++.+++|+.++||||+|++|++|++|||.++.++.++++++++|+.++++++++++|+|++|
T Consensus 367 ~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~gl~t 446 (544)
T TIGR01842 367 IWPPTSGSVRLDGADLKQWDRETFGKHIGYLPQDVELFPGTVAENIARFGENADPEKIIEAAKLAGVHELILRLPDGYDT 446 (544)
T ss_pred CCCCCCceEEECCEehhhCCHHHHhhheEEecCCcccccccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcccccc
Confidence 99999999999999999999999999999999999999999999999887777889999999999999999999999999
Q ss_pred cccCCCCCCChHHHHHHHHHHhcccCCCeeEEeCcccCCCHHHHHHHHHHHHHHc-CCCeEEEEccCccccccCCEEEEE
Q 001411 336 QVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIM-SNRTTIVVAHRLSTVRDVDTIMVL 414 (1082)
Q Consensus 336 ~~g~~g~~LSgGqkqri~lARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~vtH~~~~~~~~d~i~~l 414 (1082)
.+|++|.+||||||||++||||++++|+++|||||||+||+++++.+.+.+.++. +++|+|+||||++.++.||+|++|
T Consensus 447 ~~~~~g~~LSgGq~qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~ith~~~~~~~~d~i~~l 526 (544)
T TIGR01842 447 VIGPGGATLSGGQRQRIALARALYGDPKLVVLDEPNSNLDEEGEQALANAIKALKARGITVVVITHRPSLLGCVDKILVL 526 (544)
T ss_pred ccCCCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccccCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHHHHhCCEEEEE
Confidence 9999999999999999999999999999999999999999999999999999885 579999999999999999999999
Q ss_pred eCCEEEEecCchhhhh
Q 001411 415 KNGQVVESGTHVDLIS 430 (1082)
Q Consensus 415 ~~G~i~~~g~~~~l~~ 430 (1082)
++|++++.|+|+++++
T Consensus 527 ~~G~i~~~g~~~~l~~ 542 (544)
T TIGR01842 527 QDGRIARFGERDEVLA 542 (544)
T ss_pred ECCEEEeeCCHHHHhh
Confidence 9999999999999865
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-67 Score=636.95 Aligned_cols=480 Identities=24% Similarity=0.336 Sum_probs=334.7
Q ss_pred cEEEEEEEEECCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHHhCCCCCCcEEEECCeeCCCCCHHHHhhhce
Q 001411 205 QIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMG 284 (1082)
Q Consensus 205 ~i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 284 (1082)
-++++|++++|++. .++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+++ +..||
T Consensus 4 ~i~~~nls~~~~~~-~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p~~G~i~~~~-----------~~~i~ 71 (552)
T TIGR03719 4 IYTMNRVSKVVPPK-KEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAP-----------GIKVG 71 (552)
T ss_pred EEEEeeEEEecCCC-CeeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecC-----------CCEEE
Confidence 48999999999722 3599999999999999999999999999999999999999999999975 24699
Q ss_pred EEccCCCcChh-cHHHHHhcCCCC------------------CC--------HHHHHHHHHHhch-------HHHHhcCC
Q 001411 285 LVSQEPALFAT-SIANNILLGKED------------------AS--------MDRVIEAAKAANA-------HSFVEGLP 330 (1082)
Q Consensus 285 ~v~Q~~~l~~~-ti~~ni~~g~~~------------------~~--------~~~~~~~~~~~~~-------~~~i~~lp 330 (1082)
||+|+|++++. |++||+.++... .. ..++.++++.++. .+.++.+
T Consensus 72 ~v~Q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~- 150 (552)
T TIGR03719 72 YLPQEPQLDPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDAL- 150 (552)
T ss_pred EEeccCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhhC-
Confidence 99999998865 999999875310 00 1122233322222 2223333
Q ss_pred CCccccccCCCCCCChHHHHHHHHHHhcccCCCeeEEeCcccCCCHHHHHHHHHHHHHHcCCCeEEEEccCcccccc-CC
Q 001411 331 DGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRD-VD 409 (1082)
Q Consensus 331 ~g~~t~~g~~g~~LSgGqkqri~lARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~vtH~~~~~~~-~d 409 (1082)
|++ .......+||||||||++|||||+.+|++|||||||++||+.+...+.+.|.++ ++|+|+|||+++.+.. ||
T Consensus 151 -~l~-~~~~~~~~LSgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~~--~~tvIiisHd~~~~~~~~d 226 (552)
T TIGR03719 151 -RCP-PWDADVTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQEY--PGTVVAVTHDRYFLDNVAG 226 (552)
T ss_pred -CCC-cccCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHHHHhC--CCeEEEEeCCHHHHHhhcC
Confidence 332 134566789999999999999999999999999999999999999999999876 3699999999999876 89
Q ss_pred EEEEEeCCEEE-EecCchhhhhcCchhHHHHHhhhccccCCCCcccCCCCCCCCCCCCCCCCcccchhhhhhhhhhhccC
Q 001411 410 TIMVLKNGQVV-ESGTHVDLISKGGEYAALVNLQSSEHLSNPSSICYSGSSRYSSFRDFPSSRRYDVEFESSKRRELQSS 488 (1082)
Q Consensus 410 ~i~~l~~G~i~-~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 488 (1082)
+|++|++|+++ ..|++++..+.... .... .. .+
T Consensus 227 ~v~~l~~g~i~~~~g~~~~~~~~~~~---~~~~------------------------------------~~---~~---- 260 (552)
T TIGR03719 227 WILELDRGRGIPWEGNYSSWLEQKEK---RLEQ------------------------------------EE---KE---- 260 (552)
T ss_pred eEEEEECCEEEEecCCHHHHHHHHHH---HHHH------------------------------------HH---HH----
Confidence 99999999976 66766655321000 0000 00 00
Q ss_pred CCCCCCchhHHHHHHHhcchhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCchhhHhHHHHHHHHHHHHHHHHHH
Q 001411 489 DQSFAPSPSIWELLKLNAAEWPYAVLGSVGAILAGMEAPLFALGITHILTAFYSPHDSQIKRVVDQVALIFVGLAVVTIP 568 (1082)
Q Consensus 489 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 568 (1082)
+ ..
T Consensus 261 -------------~-------------------------------------------~~--------------------- 263 (552)
T TIGR03719 261 -------------E-------------------------------------------SA--------------------- 263 (552)
T ss_pred -------------H-------------------------------------------HH---------------------
Confidence 0 00
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccccccCCChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001411 569 VYLLQHYFYTLMGEHLTARVRLSMFSAILSNEIGWFDLDENNTGLLISTLAADATLVRSALADRLSIIVQNVALTVTAFV 648 (1082)
Q Consensus 569 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~l~~~~~ffd~~~~~~G~il~r~s~D~~~i~~~~~~~l~~~~~~~~~~~~~~~ 648 (1082)
...
T Consensus 264 -------------------~~~---------------------------------------------------------- 266 (552)
T TIGR03719 264 -------------------RQK---------------------------------------------------------- 266 (552)
T ss_pred -------------------HHH----------------------------------------------------------
Confidence 000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHccHHHHHHcCcHHHHHHHHHHHHhhHH
Q 001411 649 IAFILSWRLAAVVAASLPLLIGAFVAEQLFLKGFGGDYNRAYSRATSVAREAIANIRTVAAYGIEKRISIQFASELSQPN 728 (1082)
Q Consensus 649 ~~~~~~~~l~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~tIra~~~~~~~~~~~~~~~~~~~ 728 (1082)
+.++... ....... + + +. ..
T Consensus 267 ------------------------------------~~~~~~~----~~~~~~~--------~-------~--~~--~~- 286 (552)
T TIGR03719 267 ------------------------------------ALKRELE----WVRSSPK--------A-------R--QA--KS- 286 (552)
T ss_pred ------------------------------------HHHHHHH----HHHhhhh--------h-------H--HH--HH-
Confidence 0000000 0000000 0 0 00 00
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001411 729 KQALLRGHISGFGYGVSQLLSLCSYALGLWYASVLIKQKGSNFGDIMKSFMVLIITALAVAETLALAPDIVKGSQALGPV 808 (1082)
Q Consensus 729 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri 808 (1082)
+.. ....++.
T Consensus 287 ~~~----------------------------------------------------------------------~~~~~~~ 296 (552)
T TIGR03719 287 KAR----------------------------------------------------------------------LARYEEL 296 (552)
T ss_pred HHH----------------------------------------------------------------------HHHHHhh
Confidence 000 0000000
Q ss_pred HHhhcccccCCCCCCC--CcccccccccEEEEeEEEECCCCCCcccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHhcc
Q 001411 809 FGILYRKTAIQPDDPA--SKEVTEIKGNIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRF 886 (1082)
Q Consensus 809 ~~~~~~~~~~~~~~~~--~~~~~~~~g~I~~~~Vs~~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl 886 (1082)
.+ ...+..++.... .......+..|+++|++++|+ +.++|+|+||+|++||++||+|+||||||||+++|.|+
T Consensus 297 ~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~---~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~ 371 (552)
T TIGR03719 297 LS--QEFQKRNETAEIYIPPGPRLGDKVIEAENLSKGFG---DKLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQ 371 (552)
T ss_pred hh--hcccccCCCceeecCCCCCCCCeEEEEeeEEEEEC---CeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCC
Confidence 00 000000000000 000001123599999999996 34699999999999999999999999999999999999
Q ss_pred ccCCccEEEECCccCCCCCHHHHhcceEEEcccCc-ccc-ccHHHHhccCCCC--CC--HHHHHHHHHHhcHHHHHhhCc
Q 001411 887 YDPISGTVLIDGYDIRTLNLRSLRRKIGLVQQEPA-LFS-TTIYENIKYGNED--AS--EIELMKATKAANAHGFISRMP 960 (1082)
Q Consensus 887 ~~p~~G~I~idG~di~~i~~~~lR~~i~~VpQdp~-Lf~-gTIreNl~~~~~~--~~--d~ei~~al~~a~l~~~i~~lp 960 (1082)
.+|++|+|.+++ ++ +|+|+||++. +++ .|+++|+.++... .. +.+..++++..++
T Consensus 372 ~~p~~G~i~~~~-~~----------~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l-------- 432 (552)
T TIGR03719 372 EQPDSGTIKIGE-TV----------KLAYVDQSRDALDPNKTVWEEISGGLDIIQLGKREVPSRAYVGRFNF-------- 432 (552)
T ss_pred CCCCCeEEEECC-ce----------EEEEEeCCccccCCCCcHHHHHHhhccccccCcchHHHHHHHHhCCC--------
Confidence 999999999954 21 6999999973 554 5999999875321 11 2222333333333
Q ss_pred ccccc-cccCCCCCCChhHHHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhc-c
Q 001411 961 EGYQS-HVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLMEGRTTIMVAHRLSTIRN-A 1038 (1082)
Q Consensus 961 ~gldt-~v~e~G~~LSgGQrQrlaLARAlL~~~~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~-~ 1038 (1082)
+. ........||||||||++|||||+.+|++|||||||++||+.+.+.+.+.|++. . .|||+|||+++.+.. |
T Consensus 433 ---~~~~~~~~~~~LSgGe~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~-~-~~viivsHd~~~~~~~~ 507 (552)
T TIGR03719 433 ---KGSDQQKKVGQLSGGERNRVHLAKTLKSGGNVLLLDEPTNDLDVETLRALEEALLEF-A-GCAVVISHDRWFLDRIA 507 (552)
T ss_pred ---ChhHhcCchhhCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHC-C-CeEEEEeCCHHHHHHhC
Confidence 21 123344679999999999999999999999999999999999999999999986 3 489999999999876 9
Q ss_pred CEEEEEeC-CEEEE-ecChHHHhh
Q 001411 1039 DKIAVLQQ-GKVAE-IGSHEQLLR 1060 (1082)
Q Consensus 1039 DrI~Vl~~-G~ive-~G~~~eLl~ 1060 (1082)
|+|++|++ |++++ .|+++++.+
T Consensus 508 d~i~~l~~~~~~~~~~g~~~~~~~ 531 (552)
T TIGR03719 508 THILAFEGDSHVEWFEGNYSEYEE 531 (552)
T ss_pred CEEEEEECCCeEEEeCCCHHHHHH
Confidence 99999997 68874 488877765
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. |
| >PLN03130 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-65 Score=676.01 Aligned_cols=471 Identities=19% Similarity=0.292 Sum_probs=377.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCccccccCCChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001411 578 TLMGEHLTARVRLSMFSAILSNEIGWFDLDENNTGLLISTLAADATLVRSALADRLSIIVQNVALTVTAFVIAFILSWRL 657 (1082)
Q Consensus 578 ~~~~~~~~~~l~~~l~~~~l~~~~~ffd~~~~~~G~il~r~s~D~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l 657 (1082)
...+.++...++..+|+++++.+..+++. .++|+++|++++|++.++..+. .+..++...+.+++++++++. .+
T Consensus 366 ~~~~~~ir~~L~~~i~~k~L~l~~~~~~~--~~~G~ivnl~s~Dv~~i~~~~~-~l~~l~~~pl~ii~~~~lL~~---~l 439 (1622)
T PLN03130 366 MRVGFRLRSTLVAAVFRKSLRLTHEGRKK--FTSGKITNLMTTDAEALQQICQ-QLHTLWSAPFRIIIAMVLLYQ---QL 439 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCChhhcCC--CCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH---HH
Confidence 46777888888889999999999998864 7899999999999999999874 455555555544444443332 12
Q ss_pred HHHHHH---HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHccHHHHHHcCcHHHHHHHHHHHHhhHHHHHHHH
Q 001411 658 AAVVAA---SLPLLIGAFVAEQLFLKGFGGDYNRAYSRATSVAREAIANIRTVAAYGIEKRISIQFASELSQPNKQALLR 734 (1082)
Q Consensus 658 ~~~~l~---~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~tIra~~~~~~~~~~~~~~~~~~~~~~~~~ 734 (1082)
++..++ ++.+++.+..+..+..++..++..+...+..+.+.|.++|+++||.|++|+.+.+++.+..++..+...+.
T Consensus 440 g~~~l~g~~v~~l~~~l~~~~~~~~~~~~~~~~~~~d~r~~~~~E~L~gi~~IK~~~~E~~~~~~i~~~r~~e~~~~~~~ 519 (1622)
T PLN03130 440 GVASLIGSLMLVLMFPIQTFIISKMQKLTKEGLQRTDKRIGLMNEVLAAMDTVKCYAWENSFQSKVQTVRDDELSWFRKA 519 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 222221 11122222223334444455555566677779999999999999999999999999988777766555444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 001411 735 GHISGFGYGVSQLLSLCSYALGLWYASVLIKQKGSNFGDIMKSFMVLIITALAVAETLALAPDIVKGSQALGPVFGILYR 814 (1082)
Q Consensus 735 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~~~~ 814 (1082)
.....+...+..... ..+...+++.+++..+.++.+.+++++........++..+...+..+..+..+.+|+.++++.
T Consensus 520 ~~~~~~~~~~~~~~~--~~v~~~~fg~~~~~~g~Lt~g~vf~~l~l~~~l~~pl~~l~~~i~~~~~a~~s~~RI~~~L~~ 597 (1622)
T PLN03130 520 QLLSAFNSFILNSIP--VLVTVVSFGVFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNLITQAVNANVSLKRLEELLLA 597 (1622)
T ss_pred HHHHHHHHHHHHHHH--HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 444443332222211 134456678888888999999999888777777788888888889999999999999999865
Q ss_pred cccCCCCCCCCcccccccccEEEEeEEEECCCCCCcccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCc-cE
Q 001411 815 KTAIQPDDPASKEVTEIKGNIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPIS-GT 893 (1082)
Q Consensus 815 ~~~~~~~~~~~~~~~~~~g~I~~~~Vs~~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~-G~ 893 (1082)
++..+...+ +..+..+.|+|+||+|+|+.+++.++|+|+||+|++||+++|||+||||||||+++|+|+++|++ |+
T Consensus 598 ~e~~~~~~~---~~~~~~~~I~~~nvsf~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~GG~ 674 (1622)
T PLN03130 598 EERVLLPNP---PLEPGLPAISIKNGYFSWDSKAERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDAS 674 (1622)
T ss_pred cccccccCC---cccCCCCceEEEeeEEEccCCCCCceeeceeEEecCCCEEEEECCCCCCHHHHHHHHHHhhccCCCce
Confidence 432211111 11112357999999999985445689999999999999999999999999999999999999999 99
Q ss_pred EEECCccCCCCCHHHHhcceEEEcccCccccccHHHHhccCCCCCCHHHHHHHHHHhcHHHHHhhCcccccccccCCCCC
Q 001411 894 VLIDGYDIRTLNLRSLRRKIGLVQQEPALFSTTIYENIKYGNEDASEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQ 973 (1082)
Q Consensus 894 I~idG~di~~i~~~~lR~~i~~VpQdp~Lf~gTIreNl~~~~~~~~d~ei~~al~~a~l~~~i~~lp~gldt~v~e~G~~ 973 (1082)
|.+ |.+|+||||+|.+|+|||||||.+|.+ .++++++++++.|+++++++.||+|++|.|||+|.+
T Consensus 675 I~l-------------~~~Iayv~Q~p~LfngTIreNI~fg~~-~d~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~G~~ 740 (1622)
T PLN03130 675 VVI-------------RGTVAYVPQVSWIFNATVRDNILFGSP-FDPERYERAIDVTALQHDLDLLPGGDLTEIGERGVN 740 (1622)
T ss_pred EEE-------------cCeEEEEcCccccCCCCHHHHHhCCCc-ccHHHHHHHHHHhCcHHHHHhCCCcccccccCCCCC
Confidence 974 678999999999999999999999876 689999999999999999999999999999999999
Q ss_pred CChhHHHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHH-HHHHHhcCCceEEEEecCchhhhccCEEEEEeCCEEEEe
Q 001411 974 LSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQ-EALDKLMEGRTTIMVAHRLSTIRNADKIAVLQQGKVAEI 1052 (1082)
Q Consensus 974 LSgGQrQrlaLARAlL~~~~ILlLDEaTS~LD~~te~~I~-~~l~~~~~~~TvI~IaHrl~ti~~~DrI~Vl~~G~ive~ 1052 (1082)
||||||||||||||++++|+|+|||||||+||+++++.|. +.++...+++|+|+||||++.+..||+|++|++|+|+|+
T Consensus 741 LSGGQKQRIaLARAly~~~~IlLLDEptSALD~~~~~~I~~~~l~~~l~~kTvIlVTH~l~~l~~aD~Ii~L~~G~i~e~ 820 (1622)
T PLN03130 741 ISGGQKQRVSMARAVYSNSDVYIFDDPLSALDAHVGRQVFDKCIKDELRGKTRVLVTNQLHFLSQVDRIILVHEGMIKEE 820 (1622)
T ss_pred CCHHHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHhhHHhcCCEEEEEECCHhHHHhCCEEEEEeCCEEEEe
Confidence 9999999999999999999999999999999999998774 567777789999999999999999999999999999999
Q ss_pred cChHHHhhhccchHHHHHHHhh
Q 001411 1053 GSHEQLLRKENGIYKQLIRLQQ 1074 (1082)
Q Consensus 1053 G~~~eLl~~~~g~f~~l~~~~~ 1074 (1082)
|+|++|++ +++.|+++++.+.
T Consensus 821 Gt~~eL~~-~~~~~~~l~~~~~ 841 (1622)
T PLN03130 821 GTYEELSN-NGPLFQKLMENAG 841 (1622)
T ss_pred CCHHHHHh-cchhHHHHHHhcc
Confidence 99999997 6789999987643
|
|
| >COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-68 Score=580.56 Aligned_cols=410 Identities=28% Similarity=0.411 Sum_probs=372.5
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHHH
Q 001411 17 FAVGFTSVWQLTLLTLAVVPLIAVAGGAYTITMSTLSEKGEAAYGEAGKVAEEIISQVRAVYAFVGEAKAIESYSHSLKE 96 (1082)
Q Consensus 17 ~~~~~~~~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~ 96 (1082)
+.++|.+.+++.++.++...+++.+..+--...++-.++..+...+++.......+|.++|+++|+.+...++|.+.+.+
T Consensus 151 l~v~fl~Hp~lG~~a~~ga~iLv~la~ln~~~t~~p~~eA~~~~~~~~~~~~a~~RNAEvi~AMGM~~~l~~rW~~~~~~ 230 (580)
T COG4618 151 LAVIFLFHPWLGLIALAGAIILVVLALLNERATRKPLKEASEASIRANQLADATLRNAEVIEAMGMLGNLAKRWGRFNAA 230 (580)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHhhhHHHHHHhcccHHHHHHHHHHHHH
Confidence 55667778888888777777777777777777777778888888889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001411 97 ALKQGKKSGVAKGIGVGLTYGLLFCAWALLLWYAGILVRHGDTNGGKAFTTIINVIFSGFALGQAAPNLAAIAKGKAAAA 176 (1082)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~l~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~ 176 (1082)
+...+.+..-..+...+++..+-++....++..|+|++++|++|+|.+++.-..+.....|+-.....|.++..++.|.+
T Consensus 231 ~L~~~~~asd~~~~~~~~Sr~~Rm~lQs~iLg~GA~Lvi~ge~t~G~mIA~SIl~gRaLaPid~aI~~Wkq~~~Ar~s~~ 310 (580)
T COG4618 231 YLSAQERASDRNGAFGALSRALRMALQSAVLGLGAWLVIKGEITPGMMIAGSILSGRALAPIDLAIANWKQFVAARQSYK 310 (580)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcceeeEEcCcCCcchhhHHHHHhhhhhccHHHHHHHHHHHHHHHHHHH
Confidence 99998888888888888888899999999999999999999999997766543333444578889999999999999999
Q ss_pred HHHHHHhccCCCCCCCCCCCCCCCCCCCcEEEEEEEEECCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHHhC
Q 001411 177 NIISIIKENSHSSERPGDDGITLPKLAGQIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRL 256 (1082)
Q Consensus 177 ri~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~ 256 (1082)
|+.++|+..+... .....|.+++.+.++++++.-|+.++++|+++||++++||.++||||||||||||.++|.|.
T Consensus 311 Rl~~lL~~~p~~~-----~~m~LP~P~g~L~Ve~l~~~PPg~~~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~ 385 (580)
T COG4618 311 RLNELLAELPAAA-----ERMPLPAPQGALSVERLTAAPPGQKKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGI 385 (580)
T ss_pred HHHHHHHhCcccc-----CCCCCCCCCceeeEeeeeecCCCCCCcceecceeEecCCceEEEECCCCccHHHHHHHHHcc
Confidence 9999997655432 22455677889999999999888888899999999999999999999999999999999999
Q ss_pred CCCCCcEEEECCeeCCCCCHHHHhhhceEEccCCCcChhcHHHHHhcCCCCCCHHHHHHHHHHhchHHHHhcCCCCcccc
Q 001411 257 YEPTSGKILLDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQ 336 (1082)
Q Consensus 257 ~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~lp~g~~t~ 336 (1082)
++|.+|.|++||.++++++.+.+-++|||.||+..||+|||+|||+-..++.+.+++.+|++.++.||.|.++|+||||.
T Consensus 386 w~p~~G~VRLDga~l~qWd~e~lG~hiGYLPQdVeLF~GTIaeNIaRf~~~~d~~kIieAA~lAgvHelIl~lP~GYdT~ 465 (580)
T COG4618 386 WPPTSGSVRLDGADLRQWDREQLGRHIGYLPQDVELFDGTIAENIARFGEEADPEKVIEAARLAGVHELILRLPQGYDTR 465 (580)
T ss_pred cccCCCcEEecchhhhcCCHHHhccccCcCcccceecCCcHHHHHHhccccCCHHHHHHHHHHcChHHHHHhCcCCccCc
Confidence 99999999999999999999999999999999999999999999998777888999999999999999999999999999
Q ss_pred ccCCCCCCChHHHHHHHHHHhcccCCCeeEEeCcccCCCHHHHHHHHHHHHHHc-CCCeEEEEccCccccccCCEEEEEe
Q 001411 337 VGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIM-SNRTTIVVAHRLSTVRDVDTIMVLK 415 (1082)
Q Consensus 337 ~g~~g~~LSgGqkqri~lARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~vtH~~~~~~~~d~i~~l~ 415 (1082)
||+.|..|||||||||+||||||.||.+++||||.|+||.+.|+.+.++|.+.+ ++.|+|+||||++.+..+|+|++|+
T Consensus 466 iG~~G~~LSgGQRQRIaLARAlYG~P~lvVLDEPNsNLD~~GE~AL~~Ai~~~k~rG~~vvviaHRPs~L~~~Dkilvl~ 545 (580)
T COG4618 466 IGEGGATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAHRPSALASVDKILVLQ 545 (580)
T ss_pred cCCCCCCCCchHHHHHHHHHHHcCCCcEEEecCCCCCcchhHHHHHHHHHHHHHHcCCEEEEEecCHHHHhhcceeeeec
Confidence 999999999999999999999999999999999999999999999999999875 5789999999999999999999999
Q ss_pred CCEEEEecCchhhhhc
Q 001411 416 NGQVVESGTHVDLISK 431 (1082)
Q Consensus 416 ~G~i~~~g~~~~l~~~ 431 (1082)
+|++...|+.+|++++
T Consensus 546 ~G~~~~FG~r~eVLa~ 561 (580)
T COG4618 546 DGRIAAFGPREEVLAK 561 (580)
T ss_pred CChHHhcCCHHHHHHH
Confidence 9999999999998864
|
|
| >PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-65 Score=622.24 Aligned_cols=472 Identities=19% Similarity=0.242 Sum_probs=372.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccccccCCChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 001411 566 TIPVYLLQHYFYTLMGEHLTARVRLSMFSAILSNEIGWFDLDENNTGLLISTLAADATLVRSALADRLSIIVQNVALTVT 645 (1082)
Q Consensus 566 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~l~~~~~ffd~~~~~~G~il~r~s~D~~~i~~~~~~~l~~~~~~~~~~~~ 645 (1082)
..++.++..++..+.+.++..++|.++++++++.|++||+. +++|++++|+++|++.+...+. .+..++.+++.+++
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~lR~~l~~~ll~~~~~~~~~--~~~g~~lsrl~~dv~~i~~~~~-~l~~~~~~~~~~i~ 137 (547)
T PRK10522 61 LMAVTLGSQLALTTLGHHFVYRLRSEFIKRILDTHVERIEQ--LGSASLLASLTSDVRNITIAFV-RLPELVQGIILTLG 137 (547)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhc--cCccchHHHHHhhHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 34566778888899999999999999999999999999974 8899999999999999998765 46777888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHccHHHHHHcCcH---HHHHHHHHH
Q 001411 646 AFVIAFILSWRLAAVVAASLPLLIGAFVAEQLFLKGFGGDYNRAYSRATSVAREAIANIRTVAAYGIE---KRISIQFAS 722 (1082)
Q Consensus 646 ~~~~~~~~~~~l~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~tIra~~~~---~~~~~~~~~ 722 (1082)
+++++++++|.+++++++++|+.+++.+...+..++..++.++...+..+++.|.++|+++++ ++.+ +.+.+++.+
T Consensus 138 ~~~~l~~~~~~l~li~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~i~-~~~~~~~~~~~~~~~~ 216 (547)
T PRK10522 138 SAAYLAWLSPKMLLVTAIWMAVTIWGGFVLVARVYKHMATLRETEDKLYNDYQTVLEGRKELT-LNRERAEYVFENEYEP 216 (547)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhh-ccHHHHHHHHHHHHhH
Confidence 999999999999999999999887777766666666667777888889999999999999995 5443 456777777
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001411 723 ELSQPNKQALLRGHISGFGYGVSQLLSLCSYALGLWYASVLIKQKGSNFGDIMKSFMVLIITALAVAETLALAPDIVKGS 802 (1082)
Q Consensus 723 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 802 (1082)
..++..+...+..........+.........++.++++... +..+.+..............++......+..+..+.
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~ 293 (547)
T PRK10522 217 DAQEYRHHIIRADTFHLSAVNWSNIMMLGAIGLVFYMANSL---GWADTNVAATYSLTLLFLRTPLLSAVGALPTLLSAQ 293 (547)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77776665555444333333322222222222223333221 111222222222223334567888888889999999
Q ss_pred HHHHHHHHhhcccccCCCCCCCCcccccccccEEEEeEEEECCCCCCcccccceeEEeeCCcEEEEEcCCCCCHHHHHHH
Q 001411 803 QALGPVFGILYRKTAIQPDDPASKEVTEIKGNIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISL 882 (1082)
Q Consensus 803 ~a~~ri~~~~~~~~~~~~~~~~~~~~~~~~g~I~~~~Vs~~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~l 882 (1082)
.+.+|+.++.+.+++.+.. .. ...+..+.|+|+||+|+|++ +.++|+|+||+|+|||++||+||||||||||+++
T Consensus 294 ~a~~ri~~l~~~~~~~~~~--~~-~~~~~~~~i~~~~v~f~y~~--~~~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~l 368 (547)
T PRK10522 294 VAFNKLNKLALAPYKAEFP--RP-QAFPDWQTLELRNVTFAYQD--NGFSVGPINLTIKRGELLFLIGGNGSGKSTLAML 368 (547)
T ss_pred HHHHHHHHHhccccccccc--cc-cccCcCceEEEEEEEEEeCC--CCeEEecceEEEcCCCEEEEECCCCCCHHHHHHH
Confidence 9999999986543221111 11 11112357999999999973 3479999999999999999999999999999999
Q ss_pred HhccccCCccEEEECCccCCCCCHHHHhcceEEEcccCccccccHHHHhccCCCCCCHHHHHHHHHHhcHHHHHhhCccc
Q 001411 883 VMRFYDPISGTVLIDGYDIRTLNLRSLRRKIGLVQQEPALFSTTIYENIKYGNEDASEIELMKATKAANAHGFISRMPEG 962 (1082)
Q Consensus 883 L~rl~~p~~G~I~idG~di~~i~~~~lR~~i~~VpQdp~Lf~gTIreNl~~~~~~~~d~ei~~al~~a~l~~~i~~lp~g 962 (1082)
|+|+|+|++|+|.+||+|+++++.+++|++++||||||++|++|+++| .++.++++++++++.+++.+++.. |+|
T Consensus 369 l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~n----~~~~~~~~~~~~~~~~~l~~~~~~-~~~ 443 (547)
T PRK10522 369 LTGLYQPQSGEILLDGKPVTAEQPEDYRKLFSAVFTDFHLFDQLLGPE----GKPANPALVEKWLERLKMAHKLEL-EDG 443 (547)
T ss_pred HhCCCCCCCeEEEECCEECCCCCHHHHhhheEEEecChhHHHHhhccc----cCchHHHHHHHHHHHcCCchhhhc-ccc
Confidence 999999999999999999999999999999999999999999999999 245778888888888887766542 443
Q ss_pred ccccccCCCCCCChhHHHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHhc--CCceEEEEecCchhhhccCE
Q 001411 963 YQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLM--EGRTTIMVAHRLSTIRNADK 1040 (1082)
Q Consensus 963 ldt~v~e~G~~LSgGQrQrlaLARAlL~~~~ILlLDEaTS~LD~~te~~I~~~l~~~~--~~~TvI~IaHrl~ti~~~Dr 1040 (1082)
. .+|.+||||||||++||||++++|+|||||||||+||+++++.+.+.+.+.. +++|+|+||||++++..||+
T Consensus 444 ~-----~~G~~LSgGq~qRl~lARal~~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tvi~itH~~~~~~~~d~ 518 (547)
T PRK10522 444 R-----ISNLKLSKGQKKRLALLLALAEERDILLLDEWAADQDPHFRREFYQVLLPLLQEMGKTIFAISHDDHYFIHADR 518 (547)
T ss_pred C-----CCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEEechHHHHhCCE
Confidence 2 1478999999999999999999999999999999999999999999998654 48999999999999999999
Q ss_pred EEEEeCCEEEEe-cChHHHh
Q 001411 1041 IAVLQQGKVAEI-GSHEQLL 1059 (1082)
Q Consensus 1041 I~Vl~~G~ive~-G~~~eLl 1059 (1082)
|++|++|+++|. |++.+-.
T Consensus 519 i~~l~~G~i~e~~~~~~~~~ 538 (547)
T PRK10522 519 LLEMRNGQLSELTGEERDAA 538 (547)
T ss_pred EEEEECCEEEEecCCchhhh
Confidence 999999999987 5554443
|
|
| >TIGR02857 CydD thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-66 Score=625.40 Aligned_cols=406 Identities=30% Similarity=0.393 Sum_probs=355.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchH
Q 001411 5 HALRYLSQFFVGFAVGFTSVWQLTLLTLAVVPLIAVAGGAYTITMSTLSEKGEAAYGEAGKVAEEIISQVRAVYAFVGEA 84 (1082)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~ 84 (1082)
.++..+..+++.++++++++|.+++++++.+|+++++...+.++.++..++.++..++..+.+.|.++|+++||+|+.|+
T Consensus 124 ~~~~~~~~~~~~~~~l~~~~~~l~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~ 203 (529)
T TIGR02857 124 QLVLAVIIPLAILAAVFPADWISGLILLLTAPLIPIFMILIGWAAQAAARKQWAALSRLSGHFLDRLRGLPTLKLFGRAK 203 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHccccH
Confidence 33445556666677788899999999988888888777778888888888888889999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHH
Q 001411 85 KAIESYSHSLKEALKQGKKSGVAKGIGVGLTYGLLFCAWALLLWYAGILVRHGDTNGGKAFTTIINVIFSGFALGQAAPN 164 (1082)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~l~~g~~~~~~~~~~~~~~~l~~~~~~ 164 (1082)
.+.++|++..++..+...+..+.......+..++..+..+++++++++.+.+|.+|+|.+++++.+......|+..+...
T Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~g~~~~~~~~~~~~~~pl~~l~~~ 283 (529)
T TIGR02857 204 AQAAAIARSSEEYRERTMRVLRIAFLSSAVLELFATLSVALVAVYIGFRLLAGDLDLATGLFVLLLAPEFYLPLRQLGAD 283 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999988888877777666666655555555555555556677777899999998887766666666788888899
Q ss_pred HHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCCCCcEEEEEEEEECCCCCCccccceeEEEeCCCEEEEEcCCCC
Q 001411 165 LAAIAKGKAAAANIISIIKENSHSSERPGDDGITLPKLAGQIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGS 244 (1082)
Q Consensus 165 ~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGs 244 (1082)
+..+.+++.+++|+.++++.+++.. . ... ......+.|+++||+|+||++++++|+|+||+++|||+++|+|||||
T Consensus 284 ~~~~~~~~~~~~ri~~ll~~~~~~~-~--~~~-~~~~~~~~i~~~~v~f~y~~~~~~il~~i~l~i~~G~~~~ivG~sGs 359 (529)
T TIGR02857 284 YHARADGVAAAEALFAVLDAPRPLA-G--KAP-VTAAPAPSLEFSGLSVAYPGRRAPALRPVSFTVPPGERVALVGPSGA 359 (529)
T ss_pred HHHHHHHHHHHHHHHHHhCCCcccC-C--CcC-CCCCCCCeEEEEEEEEECCCCCcccccceeEEECCCCEEEEECCCCC
Confidence 9999999999999999997432211 1 111 11111247999999999986555699999999999999999999999
Q ss_pred cHHHHHHHHHhCCCCCCcEEEECCeeCCCCCHHHHhhhceEEccCCCcChhcHHHHHhcCCCCCCHHHHHHHHHHhchHH
Q 001411 245 GKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNILLGKEDASMDRVIEAAKAANAHS 324 (1082)
Q Consensus 245 GKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~ 324 (1082)
|||||+++|+|+++|++|+|.+||.|+++++.+++|++++||+|+|++|++||+|||.++.++.+++++.++|+.+++++
T Consensus 360 GKSTL~~ll~g~~~~~~G~I~~~g~~i~~~~~~~lr~~i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~a~~~~~l~~ 439 (529)
T TIGR02857 360 GKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSWRDQIAWVPQHPFLFAGTIAENIRLARPDASDAEIRRALERAGLDE 439 (529)
T ss_pred CHHHHHHHHhcCCCCCCcEEEECCEehhhCCHHHHHhheEEEcCCCcccCcCHHHHHhccCCCCCHHHHHHHHHHcCcHH
Confidence 99999999999999999999999999999999999999999999999999999999999988888999999999999999
Q ss_pred HHhcCCCCccccccCCCCCCChHHHHHHHHHHhcccCCCeeEEeCcccCCCHHHHHHHHHHHHHHcCCCeEEEEccCccc
Q 001411 325 FVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLST 404 (1082)
Q Consensus 325 ~i~~lp~g~~t~~g~~g~~LSgGqkqri~lARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~vtH~~~~ 404 (1082)
+++++|+|+||.+||+|.+||||||||++||||++++|+++|||||||+||+++++.+.+.+.++.+++|+|+||||++.
T Consensus 440 ~i~~lp~Gldt~v~e~g~~LSgGq~qri~laRal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~ 519 (529)
T TIGR02857 440 FVAALPQGLDTLIGEGGAGLSGGQAQRLALARAFLRDAPLLLLDEPTAHLDAETEALVTEALRALAQGRTVLLVTHRLAL 519 (529)
T ss_pred HHHhCcccccchhccccccCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHhcCCCEEEEEecCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999998889999999999999
Q ss_pred cccCCEEEEE
Q 001411 405 VRDVDTIMVL 414 (1082)
Q Consensus 405 ~~~~d~i~~l 414 (1082)
++.||+|++|
T Consensus 520 ~~~~d~i~~l 529 (529)
T TIGR02857 520 AERADRIVVL 529 (529)
T ss_pred HHhCCEEEeC
Confidence 9999999985
|
Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD |
| >PRK10636 putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-66 Score=631.72 Aligned_cols=201 Identities=27% Similarity=0.422 Sum_probs=165.7
Q ss_pred cEEEEeEEEECCCCCCcccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCccCCCCCHHHHhcce
Q 001411 834 NIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRKI 913 (1082)
Q Consensus 834 ~I~~~~Vs~~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR~~i 913 (1082)
.|+++||+++|+ +.++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+++. .++
T Consensus 312 ~l~~~~l~~~y~---~~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-----------~~i 377 (638)
T PRK10636 312 LLKMEKVSAGYG---DRIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKG-----------IKL 377 (638)
T ss_pred eEEEEeeEEEeC---CeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCC-----------EEE
Confidence 599999999996 346999999999999999999999999999999999999999999999741 269
Q ss_pred EEEcccC--cccc-ccHHHHhccCCCCCCHHHHHHHHHHhcHHHHHhhCcccccccccCCCCCCChhHHHHHHHHHHHcc
Q 001411 914 GLVQQEP--ALFS-TTIYENIKYGNEDASEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILK 990 (1082)
Q Consensus 914 ~~VpQdp--~Lf~-gTIreNl~~~~~~~~d~ei~~al~~a~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlaLARAlL~ 990 (1082)
+|+||++ .++. .|+.+|+....+...++++.+.++..++.+ ..+......||||||||++||||+++
T Consensus 378 gy~~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~l~~----------~~~~~~~~~LSgGekqRl~La~~l~~ 447 (638)
T PRK10636 378 GYFAQHQLEFLRADESPLQHLARLAPQELEQKLRDYLGGFGFQG----------DKVTEETRRFSGGEKARLVLALIVWQ 447 (638)
T ss_pred EEecCcchhhCCccchHHHHHHHhCchhhHHHHHHHHHHcCCCh----------hHhcCchhhCCHHHHHHHHHHHHHhc
Confidence 9999985 3443 478888742122223444555555554421 11222345799999999999999999
Q ss_pred CCCEEEeeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhc-cCEEEEEeCCEEE-EecChHHHhh
Q 001411 991 NPSILLLDEATSALDTASENLIQEALDKLMEGRTTIMVAHRLSTIRN-ADKIAVLQQGKVA-EIGSHEQLLR 1060 (1082)
Q Consensus 991 ~~~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~iv-e~G~~~eLl~ 1060 (1082)
+|++|||||||++||+.+...+.+.|++. + .|||+|||+++.+.. ||+|++|++|+++ ..|++++..+
T Consensus 448 ~p~lLlLDEPt~~LD~~~~~~l~~~L~~~-~-gtvi~vSHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 517 (638)
T PRK10636 448 RPNLLLLDEPTNHLDLDMRQALTEALIDF-E-GALVVVSHDRHLLRSTTDDLYLVHDGKVEPFDGDLEDYQQ 517 (638)
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHHHHHc-C-CeEEEEeCCHHHHHHhCCEEEEEECCEEEEcCCCHHHHHH
Confidence 99999999999999999999999999986 4 499999999999965 9999999999997 6799988754
|
|
| >TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-65 Score=674.76 Aligned_cols=432 Identities=23% Similarity=0.307 Sum_probs=359.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchH
Q 001411 5 HALRYLSQFFVGFAVGFTSVWQLTLLTLAVVPLIAVAGGAYTITMSTLSEKGEAAYGEAGKVAEEIISQVRAVYAFVGEA 84 (1082)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~ 84 (1082)
.++..+..++++++++++.+|.++++++.+++++.++..++.+..++..+......+...+.+.|+++|+++||+||+++
T Consensus 1085 ~~~~~~~~~i~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~s~l~~~~~E~l~Gi~tIraf~~~~ 1164 (1522)
T TIGR00957 1085 MFMGSLFNVIGALIVILLATPIAAVIIPPLGLLYFFVQRFYVASSRQLKRLESVSRSPVYSHFNETLLGVSVIRAFEEQE 1164 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCCcHHHHHhhhHH
Confidence 44556666677777777778876665555555555555555555555555566667788899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCChHHHHHHHHHHHHHHHHHHHHHH
Q 001411 85 KAIESYSHSLKEALKQGKKSGVAKGIGVGLTYGLLFCAWALLLWYAGILVR-HGDTNGGKAFTTIINVIFSGFALGQAAP 163 (1082)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~-~~~l~~g~~~~~~~~~~~~~~~l~~~~~ 163 (1082)
.+.+++.+..+...+..........+......++. .+++++.+++.+. .+.+++|.+.+++.+.+....++..+..
T Consensus 1165 ~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~v~~~~~~~~g~l~~~l~~~~~~~~~l~~l~~ 1241 (1522)
T TIGR00957 1165 RFIHQSDLKVDENQKAYYPSIVANRWLAVRLECVG---NCIVLFAALFAVISRHSLSAGLVGLSVSYSLQVTFYLNWLVR 1241 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999888777776665554444444333333222 2233444555554 5789999887777777777788899999
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCC--CCCCcEEEEEEEEECCCCCCccccceeEEEeCCCEEEEEcC
Q 001411 164 NLAAIAKGKAAAANIISIIKENSHSSERPGDDGITLP--KLAGQIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGP 241 (1082)
Q Consensus 164 ~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~~--~~~~~i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~ 241 (1082)
.+..+..+..|.+|+.++++.+++.+...+. ...++ +..+.|+|+||+|+|+++..++|+|+||+|+|||++||||+
T Consensus 1242 ~~~~~e~~~~s~eRi~~~~~~~~e~~~~~~~-~~~~~~wp~~g~I~f~nVsf~Y~~~~~~vL~~is~~I~~GekiaIVGr 1320 (1522)
T TIGR00957 1242 MSSEMETNIVAVERLKEYSETEKEAPWQIQE-TAPPSGWPPRGRVEFRNYCLRYREDLDLVLRHINVTIHGGEKVGIVGR 1320 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCccccccC-CCCCCCCCCCCcEEEEEEEEEeCCCCcccccceeEEEcCCCEEEEECC
Confidence 9999999999999999999765442210011 01111 23478999999999976545699999999999999999999
Q ss_pred CCCcHHHHHHHHHhCCCCCCcEEEECCeeCCCCCHHHHhhhceEEccCCCcChhcHHHHHhcCCCCCCHHHHHHHHHHhc
Q 001411 242 SGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNILLGKEDASMDRVIEAAKAAN 321 (1082)
Q Consensus 242 sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ti~~ni~~g~~~~~~~~~~~~~~~~~ 321 (1082)
||||||||+++|.|+++|++|+|.+||+|+++++.+++|++|+||||||.||+|||||||.... +.+++++++|++.++
T Consensus 1321 TGsGKSTL~~lL~rl~~~~~G~I~IdG~dI~~i~~~~LR~~i~iVpQdp~LF~gTIr~NLdp~~-~~sdeei~~al~~a~ 1399 (1522)
T TIGR00957 1321 TGAGKSSLTLGLFRINESAEGEIIIDGLNIAKIGLHDLRFKITIIPQDPVLFSGSLRMNLDPFS-QYSDEEVWWALELAH 1399 (1522)
T ss_pred CCCCHHHHHHHHhcCccCCCCeEEECCEEccccCHHHHHhcCeEECCCCcccCccHHHHcCccc-CCCHHHHHHHHHHcC
Confidence 9999999999999999999999999999999999999999999999999999999999998332 468899999999999
Q ss_pred hHHHHhcCCCCccccccCCCCCCChHHHHHHHHHHhcccCCCeeEEeCcccCCCHHHHHHHHHHHHHHcCCCeEEEEccC
Q 001411 322 AHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHR 401 (1082)
Q Consensus 322 ~~~~i~~lp~g~~t~~g~~g~~LSgGqkqri~lARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~vtH~ 401 (1082)
+++++.++|+|+||.+||+|.+||||||||++|||||+++|+|||||||||+||+++++.+++.|++..+++|+|+||||
T Consensus 1400 l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrl~LARALLr~~~ILiLDEaTSalD~~Te~~Iq~~l~~~~~~~TvI~IAHR 1479 (1522)
T TIGR00957 1400 LKTFVSALPDKLDHECAEGGENLSVGQRQLVCLARALLRKTKILVLDEATAAVDLETDNLIQSTIRTQFEDCTVLTIAHR 1479 (1522)
T ss_pred cHHHHhhCccCCCceecCCCCcCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecC
Confidence 99999999999999999999999999999999999999999999999999999999999999999998889999999999
Q ss_pred ccccccCCEEEEEeCCEEEEecCchhhhhcCchhHHHHHh
Q 001411 402 LSTVRDVDTIMVLKNGQVVESGTHVDLISKGGEYAALVNL 441 (1082)
Q Consensus 402 ~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~ 441 (1082)
++++..+|+|+||++|+|+|.|+|+||+++++.|+++++.
T Consensus 1480 l~ti~~~DrIlVld~G~IvE~G~~~eLl~~~~~f~~l~~~ 1519 (1522)
T TIGR00957 1480 LNTIMDYTRVIVLDKGEVAEFGAPSNLLQQRGIFYSMAKD 1519 (1522)
T ss_pred HHHHHhCCEEEEEECCEEEEECCHHHHHhCCCHHHHHHHH
Confidence 9999999999999999999999999999999999998864
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. |
| >PLN03140 ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-64 Score=651.41 Aligned_cols=213 Identities=23% Similarity=0.402 Sum_probs=177.7
Q ss_pred cEEEEeEEEECCCC----------CCcccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccC--CccEEEECCccC
Q 001411 834 NIELRNVSFKYPVR----------PDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDP--ISGTVLIDGYDI 901 (1082)
Q Consensus 834 ~I~~~~Vs~~Y~~~----------~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p--~~G~I~idG~di 901 (1082)
.+.|+||++..+.. ....+|+|||++|+|||.+||+||||||||||+++|.|..++ .+|+|.+||.++
T Consensus 867 ~~~~~~v~y~v~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~~~ 946 (1470)
T PLN03140 867 AMSFDDVNYFVDMPAEMKEQGVTEDRLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPK 946 (1470)
T ss_pred eEEEEEEEEEEccCccccccccCcCCceEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCccC
Confidence 69999999987521 123699999999999999999999999999999999999874 689999999886
Q ss_pred CCCCHHHHhcceEEEcccCcccc-ccHHHHhccCC----C-CCCHHH----HHHHHHHhcHHHHHhhCcccccccccCCC
Q 001411 902 RTLNLRSLRRKIGLVQQEPALFS-TTIYENIKYGN----E-DASEIE----LMKATKAANAHGFISRMPEGYQSHVGDRG 971 (1082)
Q Consensus 902 ~~i~~~~lR~~i~~VpQdp~Lf~-gTIreNl~~~~----~-~~~d~e----i~~al~~a~l~~~i~~lp~gldt~v~e~G 971 (1082)
+ ...+|+.++||+|++.+++ .|++|||.++. + +.++++ +.+.++..++.+. .|+.+|..+
T Consensus 947 ~---~~~~~~~igyv~Q~d~~~~~lTV~E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~~~-------~~~~vg~~~ 1016 (1470)
T PLN03140 947 K---QETFARISGYCEQNDIHSPQVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNL-------KDAIVGLPG 1016 (1470)
T ss_pred C---hHHhhhheEEEccccccCCCCcHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHCCChhH-------hCCccCCCC
Confidence 4 3457788999999998776 59999997642 1 223332 4455666665432 467777554
Q ss_pred -CCCChhHHHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEecCchh-h-hccCEEEEEeC-
Q 001411 972 -VQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLM-EGRTTIMVAHRLST-I-RNADKIAVLQQ- 1046 (1082)
Q Consensus 972 -~~LSgGQrQrlaLARAlL~~~~ILlLDEaTS~LD~~te~~I~~~l~~~~-~~~TvI~IaHrl~t-i-~~~DrI~Vl~~- 1046 (1082)
..||||||||++|||||+.+|+||+||||||+||+.+...+.+.|++.. +|+|||+++|+++. + ..+|++++|++
T Consensus 1017 ~~~LSgGerkRvsIa~aL~~~P~lL~LDEPTsgLD~~~a~~v~~~L~~l~~~g~tVI~t~Hq~~~~i~~~~D~vllL~~g 1096 (1470)
T PLN03140 1017 VTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRG 1096 (1470)
T ss_pred CCCcCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHhCCEEEEEcCC
Confidence 6799999999999999999999999999999999999999999999875 48999999999984 4 56999999996
Q ss_pred CEEEEecChH
Q 001411 1047 GKVAEIGSHE 1056 (1082)
Q Consensus 1047 G~ive~G~~~ 1056 (1082)
|+++.+|++.
T Consensus 1097 G~~v~~G~~~ 1106 (1470)
T PLN03140 1097 GQVIYSGPLG 1106 (1470)
T ss_pred CEEEEECCcc
Confidence 8999999874
|
|
| >PRK11147 ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-64 Score=620.83 Aligned_cols=201 Identities=24% Similarity=0.429 Sum_probs=164.6
Q ss_pred cEEEEeEEEECCCCCCcccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCccCCCCCHHHHhcce
Q 001411 834 NIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRKI 913 (1082)
Q Consensus 834 ~I~~~~Vs~~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR~~i 913 (1082)
.|+++||+++|+ +.++|+|+||+|++|+++||+|+||||||||+++|.|+++|++|+|.+ |.++ +|
T Consensus 319 ~l~~~~l~~~~~---~~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~-~~~~----------~i 384 (635)
T PRK11147 319 VFEMENVNYQID---GKQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHC-GTKL----------EV 384 (635)
T ss_pred eEEEeeeEEEEC---CeEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEE-CCCc----------EE
Confidence 499999999996 346999999999999999999999999999999999999999999999 4432 59
Q ss_pred EEEcccC-cccc-ccHHHHhccCCCCC--C--HHHHHHHHHHhcHHHHHhhCcccccccccCCCCCCChhHHHHHHHHHH
Q 001411 914 GLVQQEP-ALFS-TTIYENIKYGNEDA--S--EIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARA 987 (1082)
Q Consensus 914 ~~VpQdp-~Lf~-gTIreNl~~~~~~~--~--d~ei~~al~~a~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlaLARA 987 (1082)
+|++|++ .+++ .|+.+|+.++.+.. . +.++.+.++..++.+ +..+.+ ...||||||||++||||
T Consensus 385 ~y~~q~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~------~~~~~~----~~~LSgGekqRl~la~a 454 (635)
T PRK11147 385 AYFDQHRAELDPEKTVMDNLAEGKQEVMVNGRPRHVLGYLQDFLFHP------KRAMTP----VKALSGGERNRLLLARL 454 (635)
T ss_pred EEEeCcccccCCCCCHHHHHHhhcccccccchHHHHHHHHHhcCCCH------HHHhCh----hhhCCHHHHHHHHHHHH
Confidence 9999986 4655 49999998643321 1 223333333333311 112333 35699999999999999
Q ss_pred HccCCCEEEeeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhc-cCEEEEEe-CCEEEEe-cChHHHhh
Q 001411 988 ILKNPSILLLDEATSALDTASENLIQEALDKLMEGRTTIMVAHRLSTIRN-ADKIAVLQ-QGKVAEI-GSHEQLLR 1060 (1082)
Q Consensus 988 lL~~~~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~-~DrI~Vl~-~G~ive~-G~~~eLl~ 1060 (1082)
++.+|++|||||||++||+.+...+.+.|++. +.|||+|||+++.+.. ||+|++|+ +|+|.++ |++++.++
T Consensus 455 l~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vSHd~~~~~~~~d~i~~l~~~g~i~~~~g~y~~y~~ 528 (635)
T PRK11147 455 FLKPSNLLILDEPTNDLDVETLELLEELLDSY--QGTVLLVSHDRQFVDNTVTECWIFEGNGKIGRYVGGYHDARQ 528 (635)
T ss_pred HhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhC--CCeEEEEECCHHHHHHhcCEEEEEeCCCeEEEccCCHHHHHH
Confidence 99999999999999999999999999999875 4599999999999865 99999998 8999875 78888754
|
|
| >PTZ00243 ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-64 Score=662.58 Aligned_cols=437 Identities=22% Similarity=0.254 Sum_probs=351.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchH
Q 001411 5 HALRYLSQFFVGFAVGFTSVWQLTLLTLAVVPLIAVAGGAYTITMSTLSEKGEAAYGEAGKVAEEIISQVRAVYAFVGEA 84 (1082)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~ 84 (1082)
.++..+..++++++++++.+|.+.++++.++.++..+...+.+..++..+......+...+.+.|+++|+++||+|++++
T Consensus 1078 ~~~~~~~~~i~~li~~~~~~p~~~~~~i~~~~~~~~i~~~~~~~~r~~~r~~~~~~s~l~s~~~E~l~G~~tIraf~~e~ 1157 (1560)
T PTZ00243 1078 YLLQCLFSICSSILVTSASQPFVLVALVPCGYLYYRLMQFYNSANREIRRIKSVAKSPVFTLLEEALQGSATITAYGKAH 1157 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHcCHHHHHhCccHH
Confidence 44556666677777777777744333222222222233444455555555555667778899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HcCCCChHHHHHHHHHHHHHHHHHHHHH
Q 001411 85 KAIESYSHSLKEALKQGKKSGVAKGIGVGLTYGLLFCAWALLLWYAGILV--RHGDTNGGKAFTTIINVIFSGFALGQAA 162 (1082)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v--~~~~l~~g~~~~~~~~~~~~~~~l~~~~ 162 (1082)
.+.+++.+..++..+...+......+......++..+..+++.+++.+.+ ..+.+++|.+..++.+......++..+.
T Consensus 1158 ~~~~~~~~~~d~~~~~~~~~~~~~~w~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~l~~a~~l~~~l~~l~ 1237 (1560)
T PTZ00243 1158 LVMQEALRRLDVVYSCSYLENVANRWLGVRVEFLSNIVVTVIALIGVIGTMLRATSQEIGLVSLSLTMAMQTTATLNWLV 1237 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999998888877776665555555544444444443333333444332 3455788876555555566667888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccCCCCCCC------------------------CCCCC----CCCCCCCcEEEEEEEEE
Q 001411 163 PNLAAIAKGKAAAANIISIIKENSHSSERP------------------------GDDGI----TLPKLAGQIEFSEVCFA 214 (1082)
Q Consensus 163 ~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~------------------------~~~~~----~~~~~~~~i~~~~v~~~ 214 (1082)
..+..+..++.|.+|+.++++..++.+.+. .+... ......+.|+|+||+|+
T Consensus 1238 ~~~~~le~~~~s~eRi~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~f~nVsf~ 1317 (1560)
T PTZ00243 1238 RQVATVEADMNSVERLLYYTDEVPHEDMPELDEEVDALERRTGMAADVTGTVVIEPASPTSAAPHPVQAGSLVFEGVQMR 1317 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCccccccccccccccccccccccccccccccccCCCcccCCCCCCCCeEEEEEEEEE
Confidence 899999999999999999996432211000 00000 00112467999999999
Q ss_pred CCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHHhCCCCCCcEEEECCeeCCCCCHHHHhhhceEEccCCCcCh
Q 001411 215 YPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGLVSQEPALFA 294 (1082)
Q Consensus 215 y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~ 294 (1082)
|++...++|+|+||+|+|||++||||+||||||||+++|+|+++|++|+|.+||+|+++++.+++|++|+||||||.||+
T Consensus 1318 Y~~~~~~vL~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~p~~G~I~IDG~di~~i~l~~LR~~I~iVpQdp~LF~ 1397 (1560)
T PTZ00243 1318 YREGLPLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRELRRQFSMIPQDPVLFD 1397 (1560)
T ss_pred eCCCCCceeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccCCHHHHHhcceEECCCCcccc
Confidence 97654459999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcHHHHHhcCCCCCCHHHHHHHHHHhchHHHHhcCCCCccccccCCCCCCChHHHHHHHHHHhcccC-CCeeEEeCcccC
Q 001411 295 TSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRN-PKILLLDEATSA 373 (1082)
Q Consensus 295 ~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~lp~g~~t~~g~~g~~LSgGqkqri~lARal~~~-~~illlDEpts~ 373 (1082)
+||||||..+. ..+++++++||+.+++++++.++|+|+||.+||+|.+|||||||||+|||||+++ |+|||||||||+
T Consensus 1398 gTIreNIdp~~-~~sdeeI~~Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgGQrQrLaLARALL~~~~~ILlLDEATSa 1476 (1560)
T PTZ00243 1398 GTVRQNVDPFL-EASSAEVWAALELVGLRERVASESEGIDSRVLEGGSNYSVGQRQLMCMARALLKKGSGFILMDEATAN 1476 (1560)
T ss_pred ccHHHHhCccc-CCCHHHHHHHHHHCCChHHHhhCcccccccccCCcCcCCHHHHHHHHHHHHHhcCCCCEEEEeCCCcc
Confidence 99999998653 5688999999999999999999999999999999999999999999999999995 899999999999
Q ss_pred CCHHHHHHHHHHHHHHcCCCeEEEEccCccccccCCEEEEEeCCEEEEecCchhhhhc-CchhHHHHHhh
Q 001411 374 LDAESELIVQRALEKIMSNRTTIVVAHRLSTVRDVDTIMVLKNGQVVESGTHVDLISK-GGEYAALVNLQ 442 (1082)
Q Consensus 374 LD~~~~~~i~~~l~~~~~~~t~i~vtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~-~~~~~~~~~~~ 442 (1082)
||+++++.+++.|++..+++|+|+||||++++..||+|+||++|+|++.|+|+||+++ ++.|++++..+
T Consensus 1477 LD~~te~~Iq~~L~~~~~~~TvI~IAHRl~ti~~~DrIlVLd~G~VvE~Gt~~eLl~~~~~~f~~l~~~~ 1546 (1560)
T PTZ00243 1477 IDPALDRQIQATVMSAFSAYTVITIAHRLHTVAQYDKIIVMDHGAVAEMGSPRELVMNRQSIFHSMVEAL 1546 (1560)
T ss_pred CCHHHHHHHHHHHHHHCCCCEEEEEeccHHHHHhCCEEEEEECCEEEEECCHHHHHhCCCCHHHHHHHHh
Confidence 9999999999999998889999999999999999999999999999999999999975 78999998654
|
|
| >PLN03073 ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-64 Score=618.69 Aligned_cols=201 Identities=29% Similarity=0.406 Sum_probs=165.3
Q ss_pred ccEEEEeEEEECCCCCCcccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCccCCCCCHHHHhcc
Q 001411 833 GNIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRK 912 (1082)
Q Consensus 833 g~I~~~~Vs~~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR~~ 912 (1082)
..|+++||+++|+. ..++|+|+||+|++||++||+|+||||||||+++|.|+.+|++|+|.+++ +.+
T Consensus 507 ~~L~~~~ls~~y~~--~~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p~~G~I~~~~-----------~~~ 573 (718)
T PLN03073 507 PIISFSDASFGYPG--GPLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTVFRSA-----------KVR 573 (718)
T ss_pred ceEEEEeeEEEeCC--CCeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCceEEECC-----------cee
Confidence 35999999999962 33699999999999999999999999999999999999999999999875 347
Q ss_pred eEEEcccCccccccHHHHhcc----CCCCCCHHHHHHHHHHhcHHHHHhhCcccccccccCCCCCCChhHHHHHHHHHHH
Q 001411 913 IGLVQQEPALFSTTIYENIKY----GNEDASEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAI 988 (1082)
Q Consensus 913 i~~VpQdp~Lf~gTIreNl~~----~~~~~~d~ei~~al~~a~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlaLARAl 988 (1082)
|+|+||++. ...++.+|... ..+..+++++.++++..++.+.. .......||||||||++||||+
T Consensus 574 igyv~Q~~~-~~l~~~~~~~~~~~~~~~~~~~~~i~~~L~~~gl~~~~----------~~~~~~~LSgGqkqRvaLAraL 642 (718)
T PLN03073 574 MAVFSQHHV-DGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNL----------ALQPMYTLSGGQKSRVAFAKIT 642 (718)
T ss_pred EEEEecccc-ccCCcchhHHHHHHHhcCCCCHHHHHHHHHHCCCChHH----------hcCCccccCHHHHHHHHHHHHH
Confidence 999999973 22345555321 12334566777777777764211 1223467999999999999999
Q ss_pred ccCCCEEEeeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhc-cCEEEEEeCCEEE-EecChHHHh
Q 001411 989 LKNPSILLLDEATSALDTASENLIQEALDKLMEGRTTIMVAHRLSTIRN-ADKIAVLQQGKVA-EIGSHEQLL 1059 (1082)
Q Consensus 989 L~~~~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~iv-e~G~~~eLl 1059 (1082)
+++|++|||||||++||+.+...+.+.+++. + .|+|+|||+++.+.. ||+|++|++|+++ ..|++++..
T Consensus 643 ~~~p~lLLLDEPT~~LD~~s~~~l~~~L~~~-~-gtvIivSHd~~~i~~~~drv~~l~~G~i~~~~g~~~~~~ 713 (718)
T PLN03073 643 FKKPHILLLDEPSNHLDLDAVEALIQGLVLF-Q-GGVLMVSHDEHLISGSVDELWVVSEGKVTPFHGTFHDYK 713 (718)
T ss_pred hcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc-C-CEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCCHHHHH
Confidence 9999999999999999999999999999875 3 499999999999975 9999999999998 568887754
|
|
| >COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-64 Score=570.69 Aligned_cols=456 Identities=26% Similarity=0.421 Sum_probs=354.5
Q ss_pred cEEEEEEEEECCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHHhCCCCCCcEEEECCeeCCCCCHHH-Hhhhc
Q 001411 205 QIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKW-LREQM 283 (1082)
Q Consensus 205 ~i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~-~~~~i 283 (1082)
-++++|++++|++- ++|+|+||++.+||++|++|+||||||||+|+|+|.|+|++|+|.+||++....++.+ ....|
T Consensus 8 ll~~~~i~K~FggV--~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~~G~I~~~G~~~~~~sp~~A~~~GI 85 (500)
T COG1129 8 LLELRGISKSFGGV--KALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFSSPRDALAAGI 85 (500)
T ss_pred eeeeecceEEcCCc--eeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccCCCceEEECCEEccCCCHHHHHhCCc
Confidence 48899999999853 4999999999999999999999999999999999999999999999999998776654 55679
Q ss_pred eEEccCCCcChh-cHHHHHhcCCCCCC------HHHHHHHHHHhchHHHHhcCCCCccccccCCCCCCChHHHHHHHHHH
Q 001411 284 GLVSQEPALFAT-SIANNILLGKEDAS------MDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIAR 356 (1082)
Q Consensus 284 ~~v~Q~~~l~~~-ti~~ni~~g~~~~~------~~~~~~~~~~~~~~~~i~~lp~g~~t~~g~~g~~LSgGqkqri~lAR 356 (1082)
+.|+||..|++. ||.|||.+|++... ..++.+.++ +.++++ |.+........+||+||||.|+|||
T Consensus 86 ~~V~QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~-----~~l~~l--g~~~~~~~~v~~LsiaqrQ~VeIAr 158 (500)
T COG1129 86 ATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRAR-----ELLARL--GLDIDPDTLVGDLSIAQRQMVEIAR 158 (500)
T ss_pred EEEeechhccCCccHHHHhhcccccccCCCccCHHHHHHHHH-----HHHHHc--CCCCChhhhhhhCCHHHHHHHHHHH
Confidence 999999999987 99999999976432 233333332 223333 2211133444589999999999999
Q ss_pred hcccCCCeeEEeCcccCCCHHHHHHHHHHHHHHc-CCCeEEEEccCcccccc-CCEEEEEeCCEEEEecCc-hhhhhcCc
Q 001411 357 AVLRNPKILLLDEATSALDAESELIVQRALEKIM-SNRTTIVVAHRLSTVRD-VDTIMVLKNGQVVESGTH-VDLISKGG 433 (1082)
Q Consensus 357 al~~~~~illlDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~-~~l~~~~~ 433 (1082)
|+..+++|+|||||||+|+....+.+++.+++++ +|.++|+||||++++.. ||||.||+||+.+..++. .++-.
T Consensus 159 Al~~~arllIlDEPTaaLt~~E~~~Lf~~ir~Lk~~Gv~ii~ISHrl~Ei~~i~DritVlRDG~~v~~~~~~~~~~~--- 235 (500)
T COG1129 159 ALSFDARVLILDEPTAALTVKETERLFDLIRRLKAQGVAIIYISHRLDEVFEIADRITVLRDGRVVGTRPTAAETSE--- 235 (500)
T ss_pred HHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCcHHHHHHhcCEEEEEeCCEEeeecccccCCCH---
Confidence 9999999999999999999999999999999986 58999999999999865 999999999999875531 11100
Q ss_pred hhHHHHHhhhccccCCCCcccCCCCCCCCCCCCCCCCcccchhhhhhhhhhhccCCCCCCCchhHHHHHHHhcchhHHHH
Q 001411 434 EYAALVNLQSSEHLSNPSSICYSGSSRYSSFRDFPSSRRYDVEFESSKRRELQSSDQSFAPSPSIWELLKLNAAEWPYAV 513 (1082)
Q Consensus 434 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 513 (1082)
+ . +.
T Consensus 236 ----------------------------------------------------~----------~---lv----------- 239 (500)
T COG1129 236 ----------------------------------------------------D----------E---LV----------- 239 (500)
T ss_pred ----------------------------------------------------H----------H---HH-----------
Confidence 0 0 00
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCchhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001411 514 LGSVGAILAGMEAPLFALGITHILTAFYSPHDSQIKRVVDQVALIFVGLAVVTIPVYLLQHYFYTLMGEHLTARVRLSMF 593 (1082)
Q Consensus 514 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 593 (1082)
..+
T Consensus 240 ------------------------~~M----------------------------------------------------- 242 (500)
T COG1129 240 ------------------------RLM----------------------------------------------------- 242 (500)
T ss_pred ------------------------HHh-----------------------------------------------------
Confidence 000
Q ss_pred HHHHhCCCccccccCCChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001411 594 SAILSNEIGWFDLDENNTGLLISTLAADATLVRSALADRLSIIVQNVALTVTAFVIAFILSWRLAAVVAASLPLLIGAFV 673 (1082)
Q Consensus 594 ~~~l~~~~~ffd~~~~~~G~il~r~s~D~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~p~~~~~~~ 673 (1082)
.|+
T Consensus 243 -----------------vGr------------------------------------------------------------ 245 (500)
T COG1129 243 -----------------VGR------------------------------------------------------------ 245 (500)
T ss_pred -----------------hCc------------------------------------------------------------
Confidence 000
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHccHHHHHHcCcHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001411 674 AEQLFLKGFGGDYNRAYSRATSVAREAIANIRTVAAYGIEKRISIQFASELSQPNKQALLRGHISGFGYGVSQLLSLCSY 753 (1082)
Q Consensus 674 ~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~tIra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 753 (1082)
T Consensus 246 -------------------------------------------------------------------------------- 245 (500)
T COG1129 246 -------------------------------------------------------------------------------- 245 (500)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCCCCCcccccccc
Q 001411 754 ALGLWYASVLIKQKGSNFGDIMKSFMVLIITALAVAETLALAPDIVKGSQALGPVFGILYRKTAIQPDDPASKEVTEIKG 833 (1082)
Q Consensus 754 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~~~~~~~~~~~~~~~~~~~~~~g 833 (1082)
+.-+..+. .+.. .+...
T Consensus 246 --------------------------------------------------------~~~~~~~~-~~~~------~~~~~ 262 (500)
T COG1129 246 --------------------------------------------------------ELEDLFPE-PPEE------GIGEP 262 (500)
T ss_pred --------------------------------------------------------chhhhccc-cccc------CCCCc
Confidence 00000000 0000 00112
Q ss_pred cEEEEeEEEECCCCCCcccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCccCCCCCH-HHHhcc
Q 001411 834 NIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNL-RSLRRK 912 (1082)
Q Consensus 834 ~I~~~~Vs~~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~-~~lR~~ 912 (1082)
.++++|++.. ..++|+||++++||.+||.|--|||+|-++.+|+|..++.+|+|.+||.++.--++ +..+..
T Consensus 263 ~l~v~~l~~~-------~~~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~~~~G~i~l~G~~v~~~sp~~Ai~~G 335 (500)
T COG1129 263 VLEVRNLSGG-------GKVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPASSGEILLDGKPVRIRSPRDAIKAG 335 (500)
T ss_pred EEEEecCCCC-------CceeCceeEEeCCcEEEEeccccCCHHHHHHHHhCCCcCCCceEEECCEEccCCCHHHHHHcC
Confidence 3678887642 14799999999999999999999999999999999998999999999998876664 578999
Q ss_pred eEEEcccCc----cccccHHHHhccCC-CCCCHH-HHHHHHHHhcHHHHHhhCcc---cccccccCCCCCCChhHHHHHH
Q 001411 913 IGLVQQEPA----LFSTTIYENIKYGN-EDASEI-ELMKATKAANAHGFISRMPE---GYQSHVGDRGVQLSGGQKQRVA 983 (1082)
Q Consensus 913 i~~VpQdp~----Lf~gTIreNl~~~~-~~~~d~-ei~~al~~a~l~~~i~~lp~---gldt~v~e~G~~LSgGQrQrla 983 (1082)
|+|||-|.. +...||++|+.+.. ...+.. -+....++....+++.+|.- +.+.++ .+||||.+|+++
T Consensus 336 i~~v~EDRk~~Gl~l~~sI~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~~s~~~~v----~~LSGGNQQKVv 411 (500)
T COG1129 336 IAYVPEDRKSEGLVLDMSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPSPEQPI----GTLSGGNQQKVV 411 (500)
T ss_pred CEeCCcccccCcCcCCCcHHHheehHhhhhhccccccChHHHHHHHHHHHHhcCcccCCccchh----hcCCchhhhhHH
Confidence 999998874 44679999998751 111100 24445556666777777632 233333 569999999999
Q ss_pred HHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEecCchhhh-ccCEEEEEeCCEEEEecChH
Q 001411 984 IARAILKNPSILLLDEATSALDTASENLIQEALDKLM-EGRTTIMVAHRLSTIR-NADKIAVLQQGKVAEIGSHE 1056 (1082)
Q Consensus 984 LARAlL~~~~ILlLDEaTS~LD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~-~~DrI~Vl~~G~ive~G~~~ 1056 (1082)
|||+|..+|+||||||||.++|..+.+.|.+.|+++. +|.+||+||..+.++. .||||+||.+|+|+..=+.+
T Consensus 412 larwL~~~p~vLilDEPTRGIDVGAK~eIy~li~~lA~~G~ail~iSSElpEll~~~DRIlVm~~Gri~~e~~~~ 486 (500)
T COG1129 412 LARWLATDPKVLILDEPTRGIDVGAKAEIYRLIRELAAEGKAILMISSELPELLGLSDRILVMREGRIVGELDRE 486 (500)
T ss_pred HHHHHhcCCCEEEECCCCcCcccchHHHHHHHHHHHHHCCCEEEEEeCChHHHHhhCCEEEEEECCEEEEEeccc
Confidence 9999999999999999999999999999999999976 6899999999999986 59999999999998743333
|
|
| >TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-61 Score=591.49 Aligned_cols=529 Identities=17% Similarity=0.122 Sum_probs=426.2
Q ss_pred HHHHHHHhcchhH-----HHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCchhhHhHHHHHHHHHHHHHHHHHHHHHH
Q 001411 498 IWELLKLNAAEWP-----YAVLGSVGAILAGMEAPLFALGITHILTAFYSPHDSQIKRVVDQVALIFVGLAVVTIPVYLL 572 (1082)
Q Consensus 498 ~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 572 (1082)
+.+++++..++|+ .+++.+++.++........++....+++.....+..........+.++++++.++..+..++
T Consensus 79 ~~~l~~~~~p~~~~~~~~~l~~~~~~~~~~t~~~l~~~~l~~~iid~l~~~~~~~f~~~l~~~~l~~~~~~~~~~~~~~~ 158 (659)
T TIGR00954 79 LDFLLKILIPRVFCKETGLLILIAFLLVSRTYLSVYVATLDGQIESSIVRRSPRNFAWILFKWFLIAPPASFINSAIKYL 158 (659)
T ss_pred HHHHHHHHcCcccchHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555666665 45555555555555566666666776666543322222222333444555556666666777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCccccccCCChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001411 573 QHYFYTLMGEHLTARVRLSMFSAILSNEIGWFDLDENNTGLLISTLAADATLVRSALADRLSIIVQNVALTVTAFVIAFI 652 (1082)
Q Consensus 573 ~~~~~~~~~~~~~~~l~~~l~~~~l~~~~~ffd~~~~~~G~il~r~s~D~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~ 652 (1082)
..++......++..++|.+.+++....++.|||. ++|++.+|+++|++.+.+.+...+..++..++.++++++.++.
T Consensus 159 ~~~~~~~~r~~l~~~l~~~~~~~~~~~~~~~~d~---~~g~~~srlt~Dv~~i~~~~~~~~~~l~~~~~~ii~~~~~L~~ 235 (659)
T TIGR00954 159 LKELKLRFRVRLTRYLYSKYLSGFTFYKVSNLDS---RIQNPDQLLTQDVEKFCDSVVELYSNLTKPILDVILYSFKLLT 235 (659)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCceEEeccCCC---CCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777888888899999999999988889999973 6899999999999999999999999999999998888887775
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHccHHHHHHcCcHHHHHHHHHHHHhhHHHHH
Q 001411 653 -LSWRLAAVVAASLPLLIGAFVAEQLFLKGFGGDYNRAYSRATSVAREAIANIRTVAAYGIEKRISIQFASELSQPNKQA 731 (1082)
Q Consensus 653 -~~~~l~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~tIra~~~~~~~~~~~~~~~~~~~~~~ 731 (1082)
++|.+++++++.+|+..++..+..+...+...+.++..++..+.+.|.++|+++|++|+.++.+.+++.+..++..+..
T Consensus 236 ~~~~~l~l~~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~I~~~~~e~~e~~~~~~~~~~l~~~~ 315 (659)
T TIGR00954 236 ALGSVGPAGLFAYLFATGVVLTKLRPPIGKLTVEEQALEGEYRYVHSRLIMNSEEIAFYQGNKVEKETVMSSFYRLVEHL 315 (659)
T ss_pred hcchHHHHHHHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhCCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999988888888888888888889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-H-HHHHHHHHHHHH-h----CCCCHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH
Q 001411 732 LLRGHISGFGYGVSQLLSLCS-Y-ALGLWYASVLIK-Q----KGSNFGDIMKSFMV----LIITALAVAETLALAPDIVK 800 (1082)
Q Consensus 732 ~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~l~~-~----~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~ 800 (1082)
.+...+.++...+..++.... . .+.++.|...+. . |.++.|.++..+.. ......++..+......+..
T Consensus 316 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~~~~~~~~~g~~t~g~~~~~f~~~~~~~~~l~~~~~~l~~~~~~i~~ 395 (659)
T TIGR00954 316 NLIIKFRFSYGFLDNIVAKYTWSAVGLVAVSIPIFDKTHPAFLEMSEEELMQEFYNNGRLLLKAADALGRLMLAGRDMTR 395 (659)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888777765432 2 222333332332 2 67888876653332 33456778888888999999
Q ss_pred HHHHHHHHHHhhcccccCC------CCCCC--C--------------cccccccccEEEEeEEEECCCCCCcccccceeE
Q 001411 801 GSQALGPVFGILYRKTAIQ------PDDPA--S--------------KEVTEIKGNIELRNVSFKYPVRPDITIFENLNL 858 (1082)
Q Consensus 801 ~~~a~~ri~~~~~~~~~~~------~~~~~--~--------------~~~~~~~g~I~~~~Vs~~Y~~~~~~~vL~~vsl 858 (1082)
...+.+|+.++++..++.+ +..+. . .......+.|+++||+++|++ +.++|+|+||
T Consensus 396 ~~~~~~Ri~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nv~~~~~~--~~~il~~isl 473 (659)
T TIGR00954 396 LAGFTARVDTLLQVLDDVKSGNFKRPRVEEIESGREGGRNSNLVPGRGIVEYQDNGIKFENIPLVTPN--GDVLIESLSF 473 (659)
T ss_pred HHHHHHHHHHHHHHHHHHhcccccccccccccccccccccccccccccccccCCCeEEEEeeEEECCC--CCeeeecceE
Confidence 9999999999987543211 00000 0 001123467999999999973 3479999999
Q ss_pred EeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCccCCCCCHHHHhcceEEEcccCccccccHHHHhccCC---
Q 001411 859 KVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRKIGLVQQEPALFSTTIYENIKYGN--- 935 (1082)
Q Consensus 859 ~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR~~i~~VpQdp~Lf~gTIreNl~~~~--- 935 (1082)
+|++||++||+||||||||||+++|.|+++|++|+|.+|+ |++++||||+|.+|++|++||+.++.
T Consensus 474 ~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~~~~G~i~~~~-----------~~~i~~v~Q~~~l~~~tv~eni~~~~~~~ 542 (659)
T TIGR00954 474 EVPSGNHLLICGPNGCGKSSLFRILGELWPVYGGRLTKPA-----------KGKLFYVPQRPYMTLGTLRDQIIYPDSSE 542 (659)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEeecC-----------CCcEEEECCCCCCCCcCHHHHHhcCCChh
Confidence 9999999999999999999999999999999999999874 67899999999999999999998863
Q ss_pred ----CCCCHHHHHHHHHHhcHHHHHhhCcccccccccCCCCCCChhHHHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHH
Q 001411 936 ----EDASEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENL 1011 (1082)
Q Consensus 936 ----~~~~d~ei~~al~~a~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlaLARAlL~~~~ILlLDEaTS~LD~~te~~ 1011 (1082)
++.++++++++++.+++++++.+ |.|+||..+ .+.+||||||||++||||++++|++||||||||+||+++++.
T Consensus 543 ~~~~~~~~~~~i~~~l~~~~l~~~~~~-~~g~~~~~~-~~~~LSgGqkQRl~iARal~~~p~illLDEpts~LD~~~~~~ 620 (659)
T TIGR00954 543 DMKRRGLSDKDLEQILDNVQLTHILER-EGGWSAVQD-WMDVLSGGEKQRIAMARLFYHKPQFAILDECTSAVSVDVEGY 620 (659)
T ss_pred hhhccCCCHHHHHHHHHHcCCHHHHhh-cCCcccccc-cccCCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHH
Confidence 34578899999999999999988 999999986 467999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCceEEEEecCchhhhccCEEEEEeC
Q 001411 1012 IQEALDKLMEGRTTIMVAHRLSTIRNADKIAVLQQ 1046 (1082)
Q Consensus 1012 I~~~l~~~~~~~TvI~IaHrl~ti~~~DrI~Vl~~ 1046 (1082)
+++.+++. ++|+|+||||++++..||+|++|+.
T Consensus 621 l~~~l~~~--~~tvI~isH~~~~~~~~d~il~l~~ 653 (659)
T TIGR00954 621 MYRLCREF--GITLFSVSHRKSLWKYHEYLLYMDG 653 (659)
T ss_pred HHHHHHHc--CCEEEEEeCchHHHHhCCEEEEEeC
Confidence 99999874 8999999999999999999999973
|
|
| >PRK13409 putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-64 Score=602.18 Aligned_cols=437 Identities=23% Similarity=0.334 Sum_probs=318.3
Q ss_pred EEEEEECCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHHhCCCCCCcEEE-----------ECCeeCCCCCHH
Q 001411 209 SEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKIL-----------LDGHDLKSLQLK 277 (1082)
Q Consensus 209 ~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~-----------~~g~~~~~~~~~ 277 (1082)
++++++|+.+ ..+|++++ .+++||+++|+||||||||||+++|+|+++|++|+|. ++|.++.++..+
T Consensus 77 ~~~~~~yg~~-~~~L~~l~-~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~G~~l~~~~~~ 154 (590)
T PRK13409 77 EEPVHRYGVN-GFKLYGLP-IPKEGKVTGILGPNGIGKTTAVKILSGELIPNLGDYEEEPSWDEVLKRFRGTELQNYFKK 154 (590)
T ss_pred cCceEEecCC-ceeEecCC-cCCCCCEEEEECCCCCCHHHHHHHHhCCccCCCccccCCCcHHHHHHHhCChHHHHHHHH
Confidence 3488999742 34899999 8999999999999999999999999999999999997 899887644321
Q ss_pred --HHhhh----ceEEccCCCcChhcHHHHHhcCCCCCCHHHHHHHHHHhchHHHHhcCCCCccccccCCCCCCChHHHHH
Q 001411 278 --WLREQ----MGLVSQEPALFATSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQR 351 (1082)
Q Consensus 278 --~~~~~----i~~v~Q~~~l~~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~lp~g~~t~~g~~g~~LSgGqkqr 351 (1082)
..+.+ +.|++|.|.+|.+|++||+... ...+++.++++..+ ++........+||||||||
T Consensus 155 ~~~~~~~~~~~~q~~~~~p~~~~~tv~e~l~~~---~~~~~~~~~l~~l~-----------l~~~~~~~~~~LSgGe~qr 220 (590)
T PRK13409 155 LYNGEIKVVHKPQYVDLIPKVFKGKVRELLKKV---DERGKLDEVVERLG-----------LENILDRDISELSGGELQR 220 (590)
T ss_pred HhccCcceeecccchhhhhhhhcchHHHHHHhh---hHHHHHHHHHHHcC-----------CchhhcCChhhCCHHHHHH
Confidence 11122 4455666778888999999742 11233444444443 3333344556899999999
Q ss_pred HHHHHhcccCCCeeEEeCcccCCCHHHHHHHHHHHHHHcCCCeEEEEccCcccccc-CCEEEEEeCCEEEEecCchhhhh
Q 001411 352 IAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRD-VDTIMVLKNGQVVESGTHVDLIS 430 (1082)
Q Consensus 352 i~lARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~ 430 (1082)
++|||||+++|++||||||||+||+.+...+.+.|+++.+++|+|+|||+++.+.. +|+|++|+++. |
T Consensus 221 v~ia~al~~~p~lllLDEPts~LD~~~~~~l~~~i~~l~~g~tvIivsHd~~~l~~~~D~v~vl~~~~----g------- 289 (590)
T PRK13409 221 VAIAAALLRDADFYFFDEPTSYLDIRQRLNVARLIRELAEGKYVLVVEHDLAVLDYLADNVHIAYGEP----G------- 289 (590)
T ss_pred HHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCc----c-------
Confidence 99999999999999999999999999999999999988668899999999999875 89999997531 1
Q ss_pred cCchhHHHHHhhhccccCCCCcccCCCCCCCCCCCCCCCCcccchhhhhhhhhhhccCCCCCCCchhHHHHHHHhcchhH
Q 001411 431 KGGEYAALVNLQSSEHLSNPSSICYSGSSRYSSFRDFPSSRRYDVEFESSKRRELQSSDQSFAPSPSIWELLKLNAAEWP 510 (1082)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 510 (1082)
.|... . .+ . ....
T Consensus 290 ---~~g~~-----------------~---~~---------------------~-------------~~~~---------- 302 (590)
T PRK13409 290 ---AYGVV-----------------S---KP---------------------K-------------GVRV---------- 302 (590)
T ss_pred ---cccee-----------------c---ch---------------------h-------------HHHH----------
Confidence 00000 0 00 0 0000
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCchhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001411 511 YAVLGSVGAILAGMEAPLFALGITHILTAFYSPHDSQIKRVVDQVALIFVGLAVVTIPVYLLQHYFYTLMGEHLTARVRL 590 (1082)
Q Consensus 511 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 590 (1082)
+ +. .+. .
T Consensus 303 ------------~-------------i~---------------~~~----------------~----------------- 309 (590)
T PRK13409 303 ------------G-------------IN---------------EYL----------------K----------------- 309 (590)
T ss_pred ------------h-------------HH---------------HHH----------------H-----------------
Confidence 0 00 000 0
Q ss_pred HHHHHHHhCCCccccccCCChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001411 591 SMFSAILSNEIGWFDLDENNTGLLISTLAADATLVRSALADRLSIIVQNVALTVTAFVIAFILSWRLAAVVAASLPLLIG 670 (1082)
Q Consensus 591 ~l~~~~l~~~~~ffd~~~~~~G~il~r~s~D~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~p~~~~ 670 (1082)
T Consensus 310 -------------------------------------------------------------------------------- 309 (590)
T PRK13409 310 -------------------------------------------------------------------------------- 309 (590)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHccHHHHHHcCcHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 001411 671 AFVAEQLFLKGFGGDYNRAYSRATSVAREAIANIRTVAAYGIEKRISIQFASELSQPNKQALLRGHISGFGYGVSQLLSL 750 (1082)
Q Consensus 671 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~tIra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 750 (1082)
.+... |. ++ +. + .
T Consensus 310 ------~~~~~-----------------e~------~~-----------~~---~---~--------------------- 322 (590)
T PRK13409 310 ------GYLPE-----------------EN------MR-----------IR---P---E--------------------- 322 (590)
T ss_pred ------hcchh-----------------hh------hh-----------cc---c---c---------------------
Confidence 00000 00 00 00 0 0
Q ss_pred HHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCCCCCccccc
Q 001411 751 CSYALGLWYASVLIKQKGSNFGDIMKSFMVLIITALAVAETLALAPDIVKGSQALGPVFGILYRKTAIQPDDPASKEVTE 830 (1082)
Q Consensus 751 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~~~~~~~~~~~~~~~~~~~~ 830 (1082)
.. .. +..++.... .
T Consensus 323 -----------------------------------------------------------~~-~~-~~~~~~~~~-----~ 336 (590)
T PRK13409 323 -----------------------------------------------------------PI-EF-EERPPRDES-----E 336 (590)
T ss_pred -----------------------------------------------------------Cc-ce-ecCCCcccc-----C
Confidence 00 00 000000000 0
Q ss_pred ccccEEEEeEEEECCCCCCcccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCccCCCCCHHHHh
Q 001411 831 IKGNIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLR 910 (1082)
Q Consensus 831 ~~g~I~~~~Vs~~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR 910 (1082)
....++++|++++|+. ..|+++||+|++||++||+|+||||||||+++|.|+.+|++|+|.++
T Consensus 337 ~~~~l~~~~ls~~~~~----~~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I~~~------------- 399 (590)
T PRK13409 337 RETLVEYPDLTKKLGD----FSLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPE------------- 399 (590)
T ss_pred CceEEEEcceEEEECC----EEEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEe-------------
Confidence 1124999999999952 24899999999999999999999999999999999999999999986
Q ss_pred cceEEEcccCcc-ccccHHHHhccCCCCCC-HHHHHHHHHHhcHHHHHhhCcccccccccCCCCCCChhHHHHHHHHHHH
Q 001411 911 RKIGLVQQEPAL-FSTTIYENIKYGNEDAS-EIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAI 988 (1082)
Q Consensus 911 ~~i~~VpQdp~L-f~gTIreNl~~~~~~~~-d~ei~~al~~a~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlaLARAl 988 (1082)
.+++|+||++.+ ++.|+++|+.++..... +....++++..++.+... .....||||||||++|||||
T Consensus 400 ~~i~y~~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~L~~l~l~~~~~-----------~~~~~LSGGe~QRvaiAraL 468 (590)
T PRK13409 400 LKISYKPQYIKPDYDGTVEDLLRSITDDLGSSYYKSEIIKPLQLERLLD-----------KNVKDLSGGELQRVAIAACL 468 (590)
T ss_pred eeEEEecccccCCCCCcHHHHHHHHhhhcChHHHHHHHHHHCCCHHHHh-----------CCcccCCHHHHHHHHHHHHH
Confidence 159999999875 46799999986432222 233455666666654322 23356999999999999999
Q ss_pred ccCCCEEEeeCCCCCCCHHHHHHHHHHHHHhcC--CceEEEEecCchhhhc-cCEEEEEeCCEEEEecC
Q 001411 989 LKNPSILLLDEATSALDTASENLIQEALDKLME--GRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGS 1054 (1082)
Q Consensus 989 L~~~~ILlLDEaTS~LD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~G~ 1054 (1082)
+++|+||||||||++||+++...+.+.|++..+ ++|+|+|||+++.+.. ||||++|++ ++...|+
T Consensus 469 ~~~p~llLLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivsHD~~~~~~~aDrvivl~~-~~~~~g~ 536 (590)
T PRK13409 469 SRDADLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATALVVDHDIYMIDYISDRLMVFEG-EPGKHGH 536 (590)
T ss_pred hcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEcC-cceeeee
Confidence 999999999999999999999999999998743 7899999999999865 999999965 7777665
|
|
| >COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-62 Score=572.01 Aligned_cols=485 Identities=28% Similarity=0.419 Sum_probs=343.5
Q ss_pred cEEEEEEEEECCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHHhCCCCCCcEEEECCeeCCCCCHHHHhhhce
Q 001411 205 QIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMG 284 (1082)
Q Consensus 205 ~i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 284 (1082)
.|+++|++++|+++ ++|+|+||++.+|++++|||+||||||||+|+|+|...|++|+|...+. -+++
T Consensus 3 ~i~~~~ls~~~g~~--~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~~G~i~~~~~-----------~~v~ 69 (530)
T COG0488 3 MITLENLSLAYGDR--PLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPKG-----------LRVG 69 (530)
T ss_pred eEEEeeeEEeeCCc--eeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcCCCCeEeecCC-----------ceEE
Confidence 48899999999754 4999999999999999999999999999999999999999999998752 2699
Q ss_pred EEccCCCcChh-cHHHHHhcCCCCCC--HHHHHHHHH-------------------------HhchHHHHhcCCCCcccc
Q 001411 285 LVSQEPALFAT-SIANNILLGKEDAS--MDRVIEAAK-------------------------AANAHSFVEGLPDGYQTQ 336 (1082)
Q Consensus 285 ~v~Q~~~l~~~-ti~~ni~~g~~~~~--~~~~~~~~~-------------------------~~~~~~~i~~lp~g~~t~ 336 (1082)
|++|++.+.+. ||.+.+..+..... ..+...+.. .+.+...+..| |+...
T Consensus 70 ~l~Q~~~~~~~~tv~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gL--g~~~~ 147 (530)
T COG0488 70 YLSQEPPLDPEKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGL--GFPDE 147 (530)
T ss_pred EeCCCCCcCCCccHHHHHHhhhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcC--CCCcc
Confidence 99999999866 99999987754211 001111100 01122233333 33332
Q ss_pred ccCCCCCCChHHHHHHHHHHhcccCCCeeEEeCcccCCCHHHHHHHHHHHHHHcCCCeEEEEccCcccccc-CCEEEEEe
Q 001411 337 VGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRD-VDTIMVLK 415 (1082)
Q Consensus 337 ~g~~g~~LSgGqkqri~lARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~vtH~~~~~~~-~d~i~~l~ 415 (1082)
.....+||||||.|++|||||+.+||+|||||||++||.++..++.+.|.++. + |+|+||||.+++.. |++|+.++
T Consensus 148 -~~~~~~LSGG~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~~-g-tviiVSHDR~FLd~V~t~I~~ld 224 (530)
T COG0488 148 -DRPVSSLSGGWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRYP-G-TVIVVSHDRYFLDNVATHILELD 224 (530)
T ss_pred -cCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhCC-C-cEEEEeCCHHHHHHHhhheEEec
Confidence 34456899999999999999999999999999999999999999999998753 4 99999999999987 79999999
Q ss_pred CCEEEEecCchhhhhcCchhHHHHHhhhccccCCCCcccCCCCCCCCCCCCCCCCcccchhhhhhhhhhhccCCCCCCCc
Q 001411 416 NGQVVESGTHVDLISKGGEYAALVNLQSSEHLSNPSSICYSGSSRYSSFRDFPSSRRYDVEFESSKRRELQSSDQSFAPS 495 (1082)
Q Consensus 416 ~G~i~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 495 (1082)
.|++...+ |.|..+........ . .+
T Consensus 225 ~g~l~~y~---------Gny~~~~~~r~~~~--------------------------------~---~~----------- 249 (530)
T COG0488 225 RGKLTPYK---------GNYSSYLEQKAERL--------------------------------R---QE----------- 249 (530)
T ss_pred CCceeEec---------CCHHHHHHHHHHHH--------------------------------H---HH-----------
Confidence 99875421 33433322111000 0 00
Q ss_pred hhHHHHHHHhcchhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCchhhHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001411 496 PSIWELLKLNAAEWPYAVLGSVGAILAGMEAPLFALGITHILTAFYSPHDSQIKRVVDQVALIFVGLAVVTIPVYLLQHY 575 (1082)
Q Consensus 496 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 575 (1082)
.+.+..
T Consensus 250 ---~~~~~~----------------------------------------------------------------------- 255 (530)
T COG0488 250 ---AAAYEK----------------------------------------------------------------------- 255 (530)
T ss_pred ---HHHHHH-----------------------------------------------------------------------
Confidence 000000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCccccccCCChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001411 576 FYTLMGEHLTARVRLSMFSAILSNEIGWFDLDENNTGLLISTLAADATLVRSALADRLSIIVQNVALTVTAFVIAFILSW 655 (1082)
Q Consensus 576 ~~~~~~~~~~~~l~~~l~~~~l~~~~~ffd~~~~~~G~il~r~s~D~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 655 (1082)
..+..++
T Consensus 256 -------------~~~~~~~------------------------------------------------------------ 262 (530)
T COG0488 256 -------------QQKELAK------------------------------------------------------------ 262 (530)
T ss_pred -------------HHHHHHH------------------------------------------------------------
Confidence 0000000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHccHHHHHHcCcHHHHHHHHHHHHhhHHHHHHHHH
Q 001411 656 RLAAVVAASLPLLIGAFVAEQLFLKGFGGDYNRAYSRATSVAREAIANIRTVAAYGIEKRISIQFASELSQPNKQALLRG 735 (1082)
Q Consensus 656 ~l~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~tIra~~~~~~~~~~~~~~~~~~~~~~~~~~ 735 (1082)
+..|.+++........++.
T Consensus 263 ---------------------------------------------------------~~~~i~r~~~~~~~~k~a~---- 281 (530)
T COG0488 263 ---------------------------------------------------------EQEWIRRGKAAASKAKKAK---- 281 (530)
T ss_pred ---------------------------------------------------------HHHHHHHHHhccchHHHHH----
Confidence 0000000000000000000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hcc
Q 001411 736 HISGFGYGVSQLLSLCSYALGLWYASVLIKQKGSNFGDIMKSFMVLIITALAVAETLALAPDIVKGSQALGPVFGI-LYR 814 (1082)
Q Consensus 736 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~-~~~ 814 (1082)
.-....+++... ...
T Consensus 282 ----------------------------------------------------------------sr~k~l~k~~~~~~~~ 297 (530)
T COG0488 282 ----------------------------------------------------------------SRIKRLEKLEARLAEE 297 (530)
T ss_pred ----------------------------------------------------------------HHHHHHHHHHhhhhhc
Confidence 000001111100 000
Q ss_pred cccCCCCCCC--Ccccc---cccccEEEEeEEEECCCCCCcccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccC
Q 001411 815 KTAIQPDDPA--SKEVT---EIKGNIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDP 889 (1082)
Q Consensus 815 ~~~~~~~~~~--~~~~~---~~~g~I~~~~Vs~~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p 889 (1082)
.+... ..+. ..++. ..+--++++|++++|+. ++++++++||.|.+|++|||+||||+|||||+++|.|-..|
T Consensus 298 ~~~~~-~~~~~~~f~~~~~~~g~~vl~~~~~~~~y~~--~~~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~ 374 (530)
T COG0488 298 RPVEE-GKPLAFRFPPPGKRLGKLVLEFENVSKGYDG--GRLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGP 374 (530)
T ss_pred ccccc-cccceeeccCCcccCCCeeEEEeccccccCC--CceeecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhccc
Confidence 00000 0000 00001 11235999999999963 35799999999999999999999999999999999999999
Q ss_pred CccEEEECCccCCCCCHHHHhcceEEEcccC-ccc-cccHHHHhccCCCCCCHHHHHHHHHHhcHHHHHhhCcccccccc
Q 001411 890 ISGTVLIDGYDIRTLNLRSLRRKIGLVQQEP-ALF-STTIYENIKYGNEDASEIELMKATKAANAHGFISRMPEGYQSHV 967 (1082)
Q Consensus 890 ~~G~I~idG~di~~i~~~~lR~~i~~VpQdp-~Lf-~gTIreNl~~~~~~~~d~ei~~al~~a~l~~~i~~lp~gldt~v 967 (1082)
.+|+|.+.-. + ++||.+|+- .++ +.|+-+++.-..++..+.++...|.+.++..- -..++|
T Consensus 375 ~~G~v~~g~~-v----------~igyf~Q~~~~l~~~~t~~d~l~~~~~~~~e~~~r~~L~~f~F~~~------~~~~~v 437 (530)
T COG0488 375 LSGTVKVGET-V----------KIGYFDQHRDELDPDKTVLEELSEGFPDGDEQEVRAYLGRFGFTGE------DQEKPV 437 (530)
T ss_pred CCceEEeCCc-e----------EEEEEEehhhhcCccCcHHHHHHhhCccccHHHHHHHHHHcCCChH------HHhCch
Confidence 9999998632 2 599999998 444 34899999877666667888888888776532 123344
Q ss_pred cCCCCCCChhHHHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhc-cCEEEEEeC
Q 001411 968 GDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLMEGRTTIMVAHRLSTIRN-ADKIAVLQQ 1046 (1082)
Q Consensus 968 ~e~G~~LSgGQrQrlaLARAlL~~~~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~-~DrI~Vl~~ 1046 (1082)
..||||||-|+.||+.++.+|.+|||||||.+||.+|...+.++|.++ .-|||+|||+.+.+.. |++|+++++
T Consensus 438 ----~~LSGGEk~Rl~La~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL~~f--~Gtvl~VSHDr~Fl~~va~~i~~~~~ 511 (530)
T COG0488 438 ----GVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEALEEALLDF--EGTVLLVSHDRYFLDRVATRIWLVED 511 (530)
T ss_pred ----hhcCHhHHHHHHHHHHhccCCCEEEEcCCCccCCHHHHHHHHHHHHhC--CCeEEEEeCCHHHHHhhcceEEEEcC
Confidence 469999999999999999999999999999999999999999999886 3399999999999977 999999999
Q ss_pred CEEEEe-cChHHHhhh
Q 001411 1047 GKVAEI-GSHEQLLRK 1061 (1082)
Q Consensus 1047 G~ive~-G~~~eLl~~ 1061 (1082)
++.++ |.+++..+.
T Consensus 512 -~~~~~~g~y~~y~~~ 526 (530)
T COG0488 512 -KVEEFEGGYEDYLEQ 526 (530)
T ss_pred -ceeEcCCCHHHHHHh
Confidence 88887 899888763
|
|
| >COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-61 Score=535.52 Aligned_cols=457 Identities=26% Similarity=0.476 Sum_probs=357.1
Q ss_pred cEEEEEEEEECCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHHhCCCCCCcEEEECCeeCCCCC-HHHHhhhc
Q 001411 205 QIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQ-LKWLREQM 283 (1082)
Q Consensus 205 ~i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~-~~~~~~~i 283 (1082)
.++++++++.||+ ..+++||||++++||++||+|+||+|||||+++|.|+|+|++|+|.+||++++--+ .+..|..|
T Consensus 4 ~l~~~~itK~f~~--~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~~GeI~v~G~~v~~~sP~dA~~~GI 81 (501)
T COG3845 4 ALEMRGITKRFPG--VVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEVRIKSPRDAIRLGI 81 (501)
T ss_pred eEEEeccEEEcCC--EEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcccCCcceEEECCEEeccCCHHHHHHcCC
Confidence 5899999999984 45999999999999999999999999999999999999999999999999998554 56678889
Q ss_pred eEEccCCCcChh-cHHHHHhcCCCCC-----CHHHHHHHHHHhchHHHHhcCCCCccccccCCCCCCChHHHHHHHHHHh
Q 001411 284 GLVSQEPALFAT-SIANNILLGKEDA-----SMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARA 357 (1082)
Q Consensus 284 ~~v~Q~~~l~~~-ti~~ni~~g~~~~-----~~~~~~~~~~~~~~~~~i~~lp~g~~t~~g~~g~~LSgGqkqri~lARa 357 (1082)
|+|+|++.|++. ||.|||.+|.+.. +..+..+ .+.+..+++ |++-...+....||-||||||.|-+|
T Consensus 82 GMVhQHF~Lv~~lTV~ENiiLg~e~~~~~~~~~~~~~~-----~i~~l~~~y--Gl~vdp~~~V~dLsVG~qQRVEIlKa 154 (501)
T COG3845 82 GMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARA-----RIKELSERY--GLPVDPDAKVADLSVGEQQRVEILKA 154 (501)
T ss_pred cEEeeccccccccchhhhhhhcCccccccccCHHHHHH-----HHHHHHHHh--CCCCCccceeecCCcchhHHHHHHHH
Confidence 999999999987 9999999998743 1222111 111222222 55555556667899999999999999
Q ss_pred cccCCCeeEEeCcccCCCHHHHHHHHHHHHHHc-CCCeEEEEccCcccccc-CCEEEEEeCCEEEEecCchhhhhcCchh
Q 001411 358 VLRNPKILLLDEATSALDAESELIVQRALEKIM-SNRTTIVVAHRLSTVRD-VDTIMVLKNGQVVESGTHVDLISKGGEY 435 (1082)
Q Consensus 358 l~~~~~illlDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~~~~ 435 (1082)
||++|++||||||||-|-|...+.+++.++.+. .|+|||+|||++.++.. |||+.||++|+++..-++ ..
T Consensus 155 Lyr~a~iLILDEPTaVLTP~E~~~lf~~l~~l~~~G~tIi~ITHKL~Ev~~iaDrvTVLR~Gkvvgt~~~--~~------ 226 (501)
T COG3845 155 LYRGARLLILDEPTAVLTPQEADELFEILRRLAAEGKTIIFITHKLKEVMAIADRVTVLRRGKVVGTVDP--VA------ 226 (501)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhhCeeEEEeCCeEEeeecC--CC------
Confidence 999999999999999999999999999999885 58999999999999876 899999999998643210 00
Q ss_pred HHHHHhhhccccCCCCcccCCCCCCCCCCCCCCCCcccchhhhhhhhhhhccCCCCCCCchhHHHHHHHhcchhHHHHHH
Q 001411 436 AALVNLQSSEHLSNPSSICYSGSSRYSSFRDFPSSRRYDVEFESSKRRELQSSDQSFAPSPSIWELLKLNAAEWPYAVLG 515 (1082)
Q Consensus 436 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 515 (1082)
+ ... . .+.+
T Consensus 227 --------------------------~--------------~t~---~-------------ela~--------------- 235 (501)
T COG3845 227 --------------------------E--------------TTE---E-------------ELAE--------------- 235 (501)
T ss_pred --------------------------C--------------CCH---H-------------HHHH---------------
Confidence 0 000 0 0000
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHhcCCCchhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001411 516 SVGAILAGMEAPLFALGITHILTAFYSPHDSQIKRVVDQVALIFVGLAVVTIPVYLLQHYFYTLMGEHLTARVRLSMFSA 595 (1082)
Q Consensus 516 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 595 (1082)
++
T Consensus 236 --------------------lM---------------------------------------------------------- 237 (501)
T COG3845 236 --------------------LM---------------------------------------------------------- 237 (501)
T ss_pred --------------------Hh----------------------------------------------------------
Confidence 00
Q ss_pred HHhCCCccccccCCChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001411 596 ILSNEIGWFDLDENNTGLLISTLAADATLVRSALADRLSIIVQNVALTVTAFVIAFILSWRLAAVVAASLPLLIGAFVAE 675 (1082)
Q Consensus 596 ~l~~~~~ffd~~~~~~G~il~r~s~D~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~p~~~~~~~~~ 675 (1082)
.|
T Consensus 238 ---------------vG--------------------------------------------------------------- 239 (501)
T COG3845 238 ---------------VG--------------------------------------------------------------- 239 (501)
T ss_pred ---------------cC---------------------------------------------------------------
Confidence 00
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHccHHHHHHcCcHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001411 676 QLFLKGFGGDYNRAYSRATSVAREAIANIRTVAAYGIEKRISIQFASELSQPNKQALLRGHISGFGYGVSQLLSLCSYAL 755 (1082)
Q Consensus 676 ~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~tIra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 755 (1082)
T Consensus 240 -------------------------------------------------------------------------------- 239 (501)
T COG3845 240 -------------------------------------------------------------------------------- 239 (501)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCCCCCcccccccccE
Q 001411 756 GLWYASVLIKQKGSNFGDIMKSFMVLIITALAVAETLALAPDIVKGSQALGPVFGILYRKTAIQPDDPASKEVTEIKGNI 835 (1082)
Q Consensus 756 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~~~~~~~~~~~~~~~~~~~~~~g~I 835 (1082)
... .......+. .|-..-+
T Consensus 240 -----------~~v-------------------------------------------~~~~~~~~~-------~pg~~vL 258 (501)
T COG3845 240 -----------REV-------------------------------------------VLRVVKPPS-------TPGEVVL 258 (501)
T ss_pred -----------Ccc-------------------------------------------ccccccCCC-------CCCCeEE
Confidence 000 000000000 1112248
Q ss_pred EEEeEEEECCCCCCcccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCccC-CCCCHHHHhc-ce
Q 001411 836 ELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDI-RTLNLRSLRR-KI 913 (1082)
Q Consensus 836 ~~~~Vs~~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di-~~i~~~~lR~-~i 913 (1082)
+++|++..=+ + +.+.+++|||+|++||++||.|-.|-|-|.|+.+|.|+..|.+|+|.++|.|+ ...+...+|+ .+
T Consensus 259 ~V~~L~v~~~-~-~~~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~~~~G~I~l~G~~v~~~~~~~~~r~~G~ 336 (501)
T COG3845 259 EVEDLSVKDR-R-GVTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPASGRILLNGKDVLGRLSPRERRRLGL 336 (501)
T ss_pred EEeeeEeecC-C-CCceeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCCccCCceEEECCEeccccCCHHHHHhcCC
Confidence 9999998643 2 34689999999999999999999999999999999999999999999999997 6777777654 69
Q ss_pred EEEcccCc----cccccHHHHhccCCCCC---------CHHHHHHHHHHhcHHHHHhhC---cccccccccCCCCCCChh
Q 001411 914 GLVQQEPA----LFSTTIYENIKYGNEDA---------SEIELMKATKAANAHGFISRM---PEGYQSHVGDRGVQLSGG 977 (1082)
Q Consensus 914 ~~VpQdp~----Lf~gTIreNl~~~~~~~---------~d~ei~~al~~a~l~~~i~~l---p~gldt~v~e~G~~LSgG 977 (1082)
+|||.|.+ ..+-|+.||+.++..+. +-.++.+. ..+.++++ +.+.+++ ..+||||
T Consensus 337 ~~VPedR~~~Glv~~~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~-----a~~li~~fdVr~~~~~~~----a~~LSGG 407 (501)
T COG3845 337 AYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKF-----ARELIEEFDVRAPSPDAP----ARSLSGG 407 (501)
T ss_pred ccCChhhccCccccCccHHHHhhhhhccccccccccccCHHHHHHH-----HHHHHHHcCccCCCCCcc----hhhcCCc
Confidence 99999985 56779999997753221 11233222 22334332 2233333 3579999
Q ss_pred HHHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEecCchhhhc-cCEEEEEeCCEEEEecCh
Q 001411 978 QKQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLM-EGRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGSH 1055 (1082)
Q Consensus 978 QrQrlaLARAlL~~~~ILlLDEaTS~LD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~G~~ 1055 (1082)
+.||+-+||-|.++|++||..+||.+||..+.+.|++.|.+.. +|+.|++||-+|+.+.. ||||.||.+|+++...+|
T Consensus 408 NqQK~IlaREl~~~p~lLI~~qPTrGLDvgA~~~I~~~l~e~r~~G~AVLLiS~dLDEil~lsDrIaVi~~Gri~~~~~~ 487 (501)
T COG3845 408 NQQKLILARELARRPDLLIAAQPTRGLDVGAIEFIHERLLELRDAGKAVLLISEDLDEILELSDRIAVIYEGRIVGIVPP 487 (501)
T ss_pred ceehhhhhhhhccCCCEEEEcCCCccccHHHHHHHHHHHHHHHhcCCEEEEEehhHHHHHHhhheeeeeeCCceeccccc
Confidence 9999999999999999999999999999999999999999876 58999999999999965 999999999999988877
Q ss_pred HH
Q 001411 1056 EQ 1057 (1082)
Q Consensus 1056 ~e 1057 (1082)
++
T Consensus 488 ~~ 489 (501)
T COG3845 488 EE 489 (501)
T ss_pred cc
Confidence 66
|
|
| >TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-60 Score=628.70 Aligned_cols=433 Identities=18% Similarity=0.231 Sum_probs=337.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchH
Q 001411 5 HALRYLSQFFVGFAVGFTSVWQLTLLTLAVVPLIAVAGGAYTITMSTLSEKGEAAYGEAGKVAEEIISQVRAVYAFVGEA 84 (1082)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~ 84 (1082)
.++..+..+++.++++++++|.++++++.++.+++++..++.+..++..+......+...+.+.|+++|+.+||+|++++
T Consensus 1005 ~~~~~~~~~i~~l~~i~~~~p~l~l~~~~l~~~~~~~~~~~~~~~r~l~~~~~~~~s~l~~~~~Etl~Gl~tIraf~~~~ 1084 (1490)
T TIGR01271 1005 DFIQLTLIVLGAIFVVSVLQPYIFIAAIPVAVIFIMLRAYFLRTSQQLKQLESEARSPIFSHLITSLKGLWTIRAFGRQS 1084 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCHHHHHHhCCcH
Confidence 44555566667777777777766554333333333334444444455555556666778899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHH
Q 001411 85 KAIESYSHSLKEALKQGKKSGVAKGIGVGLTYGLLFCAW--ALLLWYAGILVRHGDTNGGKAFTTIINVIFSGFALGQAA 162 (1082)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~g~~~v~~~~l~~g~~~~~~~~~~~~~~~l~~~~ 162 (1082)
.+.+++.+..+...+..........+......++..+.. +++++++. ..++.|.+..++.+.+....++..+.
T Consensus 1085 ~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~i~~~~~~~~~~l~~~~-----~~~~~g~~g~~l~~~~~l~~~l~~l~ 1159 (1490)
T TIGR01271 1085 YFETLFHKALNLHTANWFLYLSTLRWFQMRIDIIFVFFFIAVTFIAIGT-----NQDGEGEVGIILTLAMNILSTLQWAV 1159 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hcCCccHHHHHHHHHHHHHHHHHHHH
Confidence 999999988775544333322222222222222111111 11122222 22344443333333444445677777
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCC------------CCCCC---CCCCcEEEEEEEEECCCCCCcccccee
Q 001411 163 PNLAAIAKGKAAAANIISIIKENSHSSERPGDD------------GITLP---KLAGQIEFSEVCFAYPSRPHMVFENLN 227 (1082)
Q Consensus 163 ~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~------------~~~~~---~~~~~i~~~~v~~~y~~~~~~~l~~i~ 227 (1082)
..+..+..+..|.+|+.++++.+++........ ...++ +..+.|+|+||+|+|++...++|+|+|
T Consensus 1160 ~~~~~le~~~~s~eRi~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~wp~~g~I~f~nVs~~Y~~~~~~vL~~is 1239 (1490)
T TIGR01271 1160 NSSIDVDGLMRSVSRVFKFIDLPQEEPRPSGGGGKYQLSTVLVIENPHAQKCWPSGGQMDVQGLTAKYTEAGRAVLQDLS 1239 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCccccccccccccccccccccccCCCCCCCCCCCeEEEEEEEEEeCCCCcceeeccE
Confidence 888899999999999999997654422110000 00001 224689999999999765556999999
Q ss_pred EEEeCCCEEEEEcCCCCcHHHHHHHHHhCCCCCCcEEEECCeeCCCCCHHHHhhhceEEccCCCcChhcHHHHHhcCCCC
Q 001411 228 FSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNILLGKED 307 (1082)
Q Consensus 228 l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ti~~ni~~g~~~ 307 (1082)
|+|+|||++||||+||||||||+++|+|+++ ++|+|.+||.|+++++.+.+|++|+||||+|.||+||||+||.... .
T Consensus 1240 ~~I~~GekvaIvGrSGsGKSTLl~lL~rl~~-~~G~I~IdG~di~~i~~~~lR~~is~IpQdp~LF~GTIR~NLdp~~-~ 1317 (1490)
T TIGR01271 1240 FSVEGGQRVGLLGRTGSGKSTLLSALLRLLS-TEGEIQIDGVSWNSVTLQTWRKAFGVIPQKVFIFSGTFRKNLDPYE-Q 1317 (1490)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEcccCCHHHHHhceEEEeCCCccCccCHHHHhCccc-C
Confidence 9999999999999999999999999999997 7999999999999999999999999999999999999999997543 4
Q ss_pred CCHHHHHHHHHHhchHHHHhcCCCCccccccCCCCCCChHHHHHHHHHHhcccCCCeeEEeCcccCCCHHHHHHHHHHHH
Q 001411 308 ASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALE 387 (1082)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~i~~lp~g~~t~~g~~g~~LSgGqkqri~lARal~~~~~illlDEpts~LD~~~~~~i~~~l~ 387 (1082)
.++++++++++.+++++++.++|+|+||.+||+|.+||||||||++|||||+++|+|||||||||+||+++++.|++.|+
T Consensus 1318 ~tdeei~~aL~~~~L~~~i~~lp~GLdt~v~e~G~nLSgGQrQrL~LARALLr~~~ILlLDEaTS~lD~~Te~~I~~~L~ 1397 (1490)
T TIGR01271 1318 WSDEEIWKVAEEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTLK 1397 (1490)
T ss_pred CCHHHHHHHHHHCCCHHHHHhCccccccccccCCCcCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHH
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCCeEEEEccCccccccCCEEEEEeCCEEEEecCchhhhhcCchhHHHHHhhhc
Q 001411 388 KIMSNRTTIVVAHRLSTVRDVDTIMVLKNGQVVESGTHVDLISKGGEYAALVNLQSS 444 (1082)
Q Consensus 388 ~~~~~~t~i~vtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~ 444 (1082)
+..+++|+|+||||++++..+|+|++|++|+|++.|+|++|+++++.|+++++....
T Consensus 1398 ~~~~~~TvI~IaHRl~ti~~~DrIlvL~~G~ivE~g~p~~Ll~~~~~f~~l~~~~~~ 1454 (1490)
T TIGR01271 1398 QSFSNCTVILSEHRVEALLECQQFLVIEGSSVKQYDSIQKLLNETSLFKQAMSAADR 1454 (1490)
T ss_pred HHcCCCEEEEEecCHHHHHhCCEEEEEECCEEEEeCCHHHHHcCCcHHHHHHHHhCh
Confidence 988899999999999999999999999999999999999999888999999876543
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. |
| >TIGR01194 cyc_pep_trnsptr cyclic peptide transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-60 Score=572.23 Aligned_cols=407 Identities=18% Similarity=0.190 Sum_probs=335.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchH
Q 001411 5 HALRYLSQFFVGFAVGFTSVWQLTLLTLAVVPLIAVAGGAYTITMSTLSEKGEAAYGEAGKVAEEIISQVRAVYAFVGEA 84 (1082)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~ 84 (1082)
.++..+..+++.++++++++|.+++++++++|+.+++..+..++.++...+.++..++.++.+.|.+.|++++|+|+.++
T Consensus 132 ~~~~~~~~~~~~~~~l~~~~~~L~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~g~~~ik~~~~~~ 211 (555)
T TIGR01194 132 PIAIALAIFFFCIAYLAYLSVPMFAITISAIIIGTAAQLLAFMGGFKFFHAARDEEDAFNEHTHAIAFGAKELKIHGIRR 211 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHhcCHHHH
Confidence 44555666777788889999999999988888888777777777777788888888999999999999999999999954
Q ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHH
Q 001411 85 --KAIESYSHSLKEALKQGKKSGVAKGIGVGLTYGLLFCAWALLLWYAGILVRHGDTNGGKAFTTIINVIFSGFALGQAA 162 (1082)
Q Consensus 85 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~l~~g~~~~~~~~~~~~~~~l~~~~ 162 (1082)
...+++.+..++..+...+..........+..++..+...+++++|++. +.+|+|.+++++.+......|+..+.
T Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~t~g~l~a~~~~~~~l~~pi~~l~ 288 (555)
T TIGR01194 212 LSFAHGAIQESANNIADLHIIEILIFIAAENFGQLLFFLLIGCALFAAAMF---ASIDAAAISAFVLALLYIKGPLEMLV 288 (555)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 5567788777777776665554444333333333333334444555443 68999998888777777778999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccCCCCCC---CCCCCC---CCCCCCCcEEEEEEEEECCCC---CCccccceeEEEeCC
Q 001411 163 PNLAAIAKGKAAAANIISIIKENSHSSER---PGDDGI---TLPKLAGQIEFSEVCFAYPSR---PHMVFENLNFSVDAG 233 (1082)
Q Consensus 163 ~~~~~~~~~~~a~~ri~~~l~~~~~~~~~---~~~~~~---~~~~~~~~i~~~~v~~~y~~~---~~~~l~~i~l~i~~g 233 (1082)
..+..++++..+++|+.++++.+++.+.. +..... ......+.|+++||+|+|++. ..++|+|+||++++|
T Consensus 289 ~~~~~~~~a~~s~~ri~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~~~~l~~vs~~i~~G 368 (555)
T TIGR01194 289 SALPILAQAQIACQRLADFGERFNEPEPELELSDADNVLLLAHDKSVDSIELKDVHMNPKAPEGSEGFALGPIDLRIAQG 368 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhccccccccccccccccccccCCCCceEEEEEEEEEeCCCCCCcCceeccceEEEcCC
Confidence 99999999999999999998532111100 000000 111223579999999999753 235999999999999
Q ss_pred CEEEEEcCCCCcHHHHHHHHHhCCCCCCcEEEECCeeCCCCCHHHHhhhceEEccCCCcChhcHHHHHhcCCCCCCHHHH
Q 001411 234 KTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNILLGKEDASMDRV 313 (1082)
Q Consensus 234 ~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ti~~ni~~g~~~~~~~~~ 313 (1082)
|+++|+||||||||||+++|+|+++|++|+|.+||.++++++..++|++++||+|++++|++|+++|+ .++.+++++
T Consensus 369 ~~~aivG~sGsGKSTl~~ll~g~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~ti~~n~---~~~~~~~~~ 445 (555)
T TIGR01194 369 DIVFIVGENGCGKSTLAKLFCGLYIPQEGEILLDGAAVSADSRDDYRDLFSAIFADFHLFDDLIGPDE---GEHASLDNA 445 (555)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhhCcEEccChhhhhhhhhccc---ccchhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999995 355678899
Q ss_pred HHHHHHhchHHHHhcCCCCccccccCCCCCCChHHHHHHHHHHhcccCCCeeEEeCcccCCCHHHHHHHHHHHH-HH-cC
Q 001411 314 IEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALE-KI-MS 391 (1082)
Q Consensus 314 ~~~~~~~~~~~~i~~lp~g~~t~~g~~g~~LSgGqkqri~lARal~~~~~illlDEpts~LD~~~~~~i~~~l~-~~-~~ 391 (1082)
.++++.+++++++..+|+|++|. .+||||||||++||||++++|+|+|||||||+||+++++.+.+.+. .+ .+
T Consensus 446 ~~~~~~~~l~~~~~~lp~g~~t~-----~~LSgGq~qRlalaRall~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~ 520 (555)
T TIGR01194 446 QQYLQRLEIADKVKIEDGGFSTT-----TALSTGQQKRLALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLKRQ 520 (555)
T ss_pred HHHHHHcCCchhhcccccccCCc-----ccCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhC
Confidence 99999999999999999999994 6899999999999999999999999999999999999999988764 34 45
Q ss_pred CCeEEEEccCccccccCCEEEEEeCCEEEEe
Q 001411 392 NRTTIVVAHRLSTVRDVDTIMVLKNGQVVES 422 (1082)
Q Consensus 392 ~~t~i~vtH~~~~~~~~d~i~~l~~G~i~~~ 422 (1082)
++|+|+||||++.++.||+|++|++|++++.
T Consensus 521 ~~tiiiisH~~~~~~~~d~i~~l~~G~i~~~ 551 (555)
T TIGR01194 521 GKTIIIISHDDQYFELADQIIKLAAGCIVKD 551 (555)
T ss_pred CCEEEEEeccHHHHHhCCEEEEEECCEEEEe
Confidence 8999999999999999999999999999864
|
This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake. |
| >KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-56 Score=551.58 Aligned_cols=494 Identities=22% Similarity=0.297 Sum_probs=365.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccccccCCChhHHHHHHHhhHHHHHHHHHHHHHHHH
Q 001411 558 IFVGLAVVTIPVYLLQHYFYTLMGEHLTARVRLSMFSAILSNEIGWFDLDENNTGLLISTLAADATLVRSALADRLSIIV 637 (1082)
Q Consensus 558 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~l~~~~~ffd~~~~~~G~il~r~s~D~~~i~~~~~~~l~~~~ 637 (1082)
..+...++..++.--..+...+.+.++-.-+-..+|+|.++..-.-- .+.+.|+++|-++.|++.+++.... +..+.
T Consensus 247 ~lf~~~~l~~l~~~~~~~~~~~~g~r~R~al~~~IY~K~L~ls~~~~--~~~t~G~ivNlms~D~~ri~~~~~~-~h~~w 323 (1381)
T KOG0054|consen 247 LLFLASLLQSLLLHQYFFVSFRVGMRLRSALISAIYRKALRLSNSAR--GETTVGEIVNLMSVDAQRLSDAACF-LHLLW 323 (1381)
T ss_pred HHHHHHHHHHHHHhHHHHHHHhhhhhHHHHHHHHHHHhhhcCchhhc--cCCCcchhhhhhhhhHHHHHHHHHH-HHHHH
Confidence 33333334443333334445666677777777777888888766532 3578999999999999999987653 33333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHccHHHHHHcCcHHHHH
Q 001411 638 QNVALTVTAFVIAFILSWRLAAVVAASLPLLIGAFVAEQLFLKGFGGDYNRAYSRATSVAREAIANIRTVAAYGIEKRIS 717 (1082)
Q Consensus 638 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~tIra~~~~~~~~ 717 (1082)
...+.++.++.+++..--.-+++.++++.+++.+-....+..+++..+......+-.....|.++|+++||.|+||+.|.
T Consensus 324 ~~Plqi~~~l~lLy~~LG~sa~~G~~~~il~~p~n~~~a~~~~~~q~~~m~~~D~Rik~~nEiL~~IkviK~yaWE~~F~ 403 (1381)
T KOG0054|consen 324 SAPLQIILALYLLYGLLGPSALAGVAVMVLLIPLNSFLAKKIAKFQKRLMKRKDERIKLMNEILNGIKVIKLYAWEKPFL 403 (1381)
T ss_pred HHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhHhhhhHhhHHHHH
Confidence 34444444444333221111222222222233333334444444444555555556688999999999999999999999
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001411 718 IQFASELSQPNKQALLRGHISGFGYGVSQLLSLCSYALGLWYASVL-IKQKGSNFGDIMKSFMVLIITALAVAETLALAP 796 (1082)
Q Consensus 718 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 (1082)
++..+.-++-.+.-.+.....++...+......+..++ .++... ...+..+....+.++......-.++...-....
T Consensus 404 ~~I~~~R~~El~~lrk~~~~~~~~~~~~~~~p~lv~~~--tF~~~v~~~~~~lt~~~aF~slalfniLr~pl~~~P~~i~ 481 (1381)
T KOG0054|consen 404 KKIEDLRQKELKLLRKSAYLSALNSFLNFFSPVLVSVV--TFVVFVLLLGNLLTASTAFTSLALFNILRFPLFMLPSVIS 481 (1381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHhhccCccccHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99888776666655555555544443333333322222 222222 334455665666666666566666666667777
Q ss_pred HHHHHHHHHHHHHHhhcccccCCCCCCCCcccccccccEEEEeEEEECCCCCCcccccceeEEeeCCcEEEEEcCCCCCH
Q 001411 797 DIVKGSQALGPVFGILYRKTAIQPDDPASKEVTEIKGNIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGK 876 (1082)
Q Consensus 797 ~~~~~~~a~~ri~~~~~~~~~~~~~~~~~~~~~~~~g~I~~~~Vs~~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGK 876 (1082)
.+.++..+++|+.+++..++..+.... ..+..+.+..|+++|.+|++.+....|.|+||||+|++|+.+||||++||||
T Consensus 482 ~~vqa~VS~~Ri~~fl~~~e~~~~~~~-~~~~~~~~~~i~i~~~sfsW~~~~~~~tL~dIn~~i~~G~lvaVvG~vGsGK 560 (1381)
T KOG0054|consen 482 QLVQAKVSLKRLKEFLLSEELDPDSVE-RSPDEAGENAIEIKNGSFSWDSESPEPTLKDINFEIKKGQLVAVVGPVGSGK 560 (1381)
T ss_pred HHHHHHHHHHHHHHHhcCcccCccccc-cCCCCCCCceEEEeeeeEecCCCCCcccccceeEEecCCCEEEEECCCCCCH
Confidence 888889999999999875432221111 0122233456999999999975334469999999999999999999999999
Q ss_pred HHHHHHHhccccCCccEEEECCccCCCCCHHHHhcceEEEcccCccccccHHHHhccCCCCCCHHHHHHHHHHhcHHHHH
Q 001411 877 STVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRKIGLVQQEPALFSTTIYENIKYGNEDASEIELMKATKAANAHGFI 956 (1082)
Q Consensus 877 STL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR~~i~~VpQdp~Lf~gTIreNl~~~~~~~~d~ei~~al~~a~l~~~i 956 (1082)
|||+++++|-.+..+|++.++|. ++||||+|.+|+|||||||.+|.| .+++.-.++++.|+|..-+
T Consensus 561 SSLL~AiLGEm~~~sG~v~v~gs-------------iaYv~Q~pWI~ngTvreNILFG~~-~d~~rY~~Vi~aC~L~~Dl 626 (1381)
T KOG0054|consen 561 SSLLSAILGEMPKLSGSVAVNGS-------------VAYVPQQPWIQNGTVRENILFGSP-YDEERYDKVIKACALKKDL 626 (1381)
T ss_pred HHHHHHHhcCcccccceEEEcCe-------------EEEeccccHhhCCcHHHhhhcCcc-ccHHHHHHHHHHccCHhHH
Confidence 99999999999999999999984 999999999999999999999764 6788889999999999999
Q ss_pred hhCcccccccccCCCCCCChhHHHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHH-HHHHhcCCceEEEEecCchhh
Q 001411 957 SRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQE-ALDKLMEGRTTIMVAHRLSTI 1035 (1082)
Q Consensus 957 ~~lp~gldt~v~e~G~~LSgGQrQrlaLARAlL~~~~ILlLDEaTS~LD~~te~~I~~-~l~~~~~~~TvI~IaHrl~ti 1035 (1082)
+.||.|=.|.|||+|.||||||||||+||||++++++|.+||+|-|++|.++.+.|.+ .|+...+++|+|.|||.++.+
T Consensus 627 e~Lp~GD~TeIGErGinLSGGQKqRIsLARAVY~~adIYLLDDplSAVDahvg~~if~~ci~~~L~~KT~ILVTHql~~L 706 (1381)
T KOG0054|consen 627 EILPFGDLTEIGERGINLSGGQKQRISLARAVYQDADIYLLDDPLSAVDAHVGKHIFEECIRGLLRGKTVILVTHQLQFL 706 (1381)
T ss_pred hhcCCCCcceecCCccCCcHhHHHHHHHHHHHhccCCEEEEcCcchhhhHhhhHHHHHHHHHhhhcCCEEEEEeCchhhh
Confidence 9999999999999999999999999999999999999999999999999999888766 465566899999999999999
Q ss_pred hccCEEEEEeCCEEEEecChHHHhhhccchHHHHHHH
Q 001411 1036 RNADKIAVLQQGKVAEIGSHEQLLRKENGIYKQLIRL 1072 (1082)
Q Consensus 1036 ~~~DrI~Vl~~G~ive~G~~~eLl~~~~g~f~~l~~~ 1072 (1082)
.+||+|+||++|+|+|.|+|+||++ .++.|.+|..+
T Consensus 707 ~~ad~Iivl~~G~I~~~Gty~el~~-~~~~~~~l~~~ 742 (1381)
T KOG0054|consen 707 PHADQIIVLKDGKIVESGTYEELLK-SGGDFAELAHE 742 (1381)
T ss_pred hhCCEEEEecCCeEecccCHHHHHh-cchhHHHHhhc
Confidence 9999999999999999999999997 67888888544
|
|
| >PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-56 Score=535.95 Aligned_cols=400 Identities=20% Similarity=0.221 Sum_probs=305.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcch
Q 001411 4 GHALRYLSQFFVGFAVGFTSVWQLTLLTLAVVPLIAVAGGAYTITMSTLSEKGEAAYGEAGKVAEEIISQVRAVYAFVGE 83 (1082)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e 83 (1082)
+.++..+..++++++++++++|.+++++++++|+.+++..++.++.++..++.++..++..+.+.|.++|+++++ ++.+
T Consensus 126 ~~~~~~~~~~i~~~~~l~~~~~~l~li~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~i~-~~~~ 204 (547)
T PRK10522 126 PELVQGIILTLGSAAYLAWLSPKMLLVTAIWMAVTIWGGFVLVARVYKHMATLRETEDKLYNDYQTVLEGRKELT-LNRE 204 (547)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhh-ccHH
Confidence 345566667777788889999999999999999988888888888888888888999999999999999999996 4333
Q ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHH
Q 001411 84 ---AKAIESYSHSLKEALKQGKKSGVAKGIGVGLTYGLLFCAWALLLWYAGILVRHGDTNGGKAFTTIINVIFSGFALGQ 160 (1082)
Q Consensus 84 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~l~~g~~~~~~~~~~~~~~~l~~ 160 (1082)
+.+.+++.+..++..+...+..........+..++..+...+++++++.. ..+ +.+.+..+.+..+....|+..
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~pl~~ 281 (547)
T PRK10522 205 RAEYVFENEYEPDAQEYRHHIIRADTFHLSAVNWSNIMMLGAIGLVFYMANSL-GWA--DTNVAATYSLTLLFLRTPLLS 281 (547)
T ss_pred HHHHHHHHHHhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hcC--ChHHHHHHHHHHHHHHHHHHH
Confidence 45677777777666665555444333322222222222222222333222 112 222222222222334468888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCCCCcEEEEEEEEECCCCCCccccceeEEEeCCCEEEEEc
Q 001411 161 AAPNLAAIAKGKAAAANIISIIKENSHSSERPGDDGITLPKLAGQIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVG 240 (1082)
Q Consensus 161 ~~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG 240 (1082)
+...+..+..+..+.+|+.++++.+++.+ ... ....+ ..+.++++||+|+|+++ .++|+|+||+++|||+++|+|
T Consensus 282 l~~~~~~~~~~~~a~~ri~~l~~~~~~~~-~~~--~~~~~-~~~~i~~~~v~f~y~~~-~~~l~~i~~~i~~G~~~aivG 356 (547)
T PRK10522 282 AVGALPTLLSAQVAFNKLNKLALAPYKAE-FPR--PQAFP-DWQTLELRNVTFAYQDN-GFSVGPINLTIKRGELLFLIG 356 (547)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccccccc-ccc--ccccC-cCceEEEEEEEEEeCCC-CeEEecceEEEcCCCEEEEEC
Confidence 89999999999999999999875432211 111 11111 12479999999999853 359999999999999999999
Q ss_pred CCCCcHHHHHHHHHhCCCCCCcEEEECCeeCCCCCHHHHhhhceEEccCCCcChhcHHHHHhcCCCCCCHHHHHHHHHHh
Q 001411 241 PSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNILLGKEDASMDRVIEAAKAA 320 (1082)
Q Consensus 241 ~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ti~~ni~~g~~~~~~~~~~~~~~~~ 320 (1082)
|||||||||+++|+|+|+|++|+|.+||+++++++.+++|++|+||+|+|++|++|+++| + +..+++++.++++..
T Consensus 357 ~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~n---~-~~~~~~~~~~~~~~~ 432 (547)
T PRK10522 357 GNGSGKSTLAMLLTGLYQPQSGEILLDGKPVTAEQPEDYRKLFSAVFTDFHLFDQLLGPE---G-KPANPALVEKWLERL 432 (547)
T ss_pred CCCCCHHHHHHHHhCCCCCCCeEEEECCEECCCCCHHHHhhheEEEecChhHHHHhhccc---c-CchHHHHHHHHHHHc
Confidence 999999999999999999999999999999999999999999999999999999999999 2 344566666666666
Q ss_pred chHHHHhcCCCCccccccCCCCCCChHHHHHHHHHHhcccCCCeeEEeCcccCCCHHHHHHHHHHHHHHc--CCCeEEEE
Q 001411 321 NAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIM--SNRTTIVV 398 (1082)
Q Consensus 321 ~~~~~i~~lp~g~~t~~g~~g~~LSgGqkqri~lARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~--~~~t~i~v 398 (1082)
++.+++. .|+|. .+|.+||||||||++||||++++|+++|||||||+||+++++.+.+.+.+.. +++|+|+|
T Consensus 433 ~l~~~~~-~~~~~-----~~G~~LSgGq~qRl~lARal~~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tvi~i 506 (547)
T PRK10522 433 KMAHKLE-LEDGR-----ISNLKLSKGQKKRLALLLALAEERDILLLDEWAADQDPHFRREFYQVLLPLLQEMGKTIFAI 506 (547)
T ss_pred CCchhhh-ccccC-----CCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEE
Confidence 5544443 23321 1478999999999999999999999999999999999999999999987653 47999999
Q ss_pred ccCccccccCCEEEEEeCCEEEEe
Q 001411 399 AHRLSTVRDVDTIMVLKNGQVVES 422 (1082)
Q Consensus 399 tH~~~~~~~~d~i~~l~~G~i~~~ 422 (1082)
|||++.++.||+|++|++|++++.
T Consensus 507 tH~~~~~~~~d~i~~l~~G~i~e~ 530 (547)
T PRK10522 507 SHDDHYFIHADRLLEMRNGQLSEL 530 (547)
T ss_pred EechHHHHhCCEEEEEECCEEEEe
Confidence 999999999999999999999876
|
|
| >TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-52 Score=514.81 Aligned_cols=396 Identities=17% Similarity=0.165 Sum_probs=327.6
Q ss_pred HHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcc
Q 001411 4 GHALRYLSQFFVGFAVGFT-SVWQLTLLTLAVVPLIAVAGGAYTITMSTLSEKGEAAYGEAGKVAEEIISQVRAVYAFVG 82 (1082)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~-~~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~ 82 (1082)
..++..+..+++.++.++. ++|.+++++++.+|+.+++..++.+++.+...+.++..++..+...|.++|+++||+|+.
T Consensus 217 ~~l~~~~~~ii~~~~~L~~~~~~~l~l~~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~I~~~~~ 296 (659)
T TIGR00954 217 SNLTKPILDVILYSFKLLTALGSVGPAGLFAYLFATGVVLTKLRPPIGKLTVEEQALEGEYRYVHSRLIMNSEEIAFYQG 296 (659)
T ss_pred HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhCC
Confidence 3455666666766666665 899999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHH-c----CCCChHHHHHHH-HH---H
Q 001411 83 EAKAIESYSHSLKEALKQGKKSGVAKGIGVGLTYGLLFC--AWALLLWYAGILVR-H----GDTNGGKAFTTI-IN---V 151 (1082)
Q Consensus 83 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~~~v~-~----~~l~~g~~~~~~-~~---~ 151 (1082)
|+.+.+++.+..++..+...+..+..+....+..++... ..++.++.|...+. . |.+|.|..+..+ .+ +
T Consensus 297 e~~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~~~~~~~~~g~~t~g~~~~~f~~~~~~~ 376 (659)
T TIGR00954 297 NKVEKETVMSSFYRLVEHLNLIIKFRFSYGFLDNIVAKYTWSAVGLVAVSIPIFDKTHPAFLEMSEEELMQEFYNNGRLL 376 (659)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCHHHHHHHHHHHHHHH
Confidence 999999999999999999888888888777777666532 22233333443332 2 689988765532 22 2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCC-----C--CC-CC-------------CCCCCCCCCcEEEEE
Q 001411 152 IFSGFALGQAAPNLAAIAKGKAAAANIISIIKENSHSSE-----R--PG-DD-------------GITLPKLAGQIEFSE 210 (1082)
Q Consensus 152 ~~~~~~l~~~~~~~~~~~~~~~a~~ri~~~l~~~~~~~~-----~--~~-~~-------------~~~~~~~~~~i~~~~ 210 (1082)
.....|+..+...+..++++.++.+|+.++++.+++... + .. .. ........+.|+++|
T Consensus 377 ~~l~~~~~~l~~~~~~i~~~~~~~~Ri~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~n 456 (659)
T TIGR00954 377 LKAADALGRLMLAGRDMTRLAGFTARVDTLLQVLDDVKSGNFKRPRVEEIESGREGGRNSNLVPGRGIVEYQDNGIKFEN 456 (659)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccccccccccccccccccccCCCeEEEEe
Confidence 334568888999999999999999999999975332110 0 00 00 000111234699999
Q ss_pred EEEECCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHHhCCCCCCcEEEECCeeCCCCCHHHHhhhceEEccCC
Q 001411 211 VCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGLVSQEP 290 (1082)
Q Consensus 211 v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~ 290 (1082)
++|+|+++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.+++ |++++||+|+|
T Consensus 457 v~~~~~~~-~~il~~isl~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~~~~G~i~~~~-----------~~~i~~v~Q~~ 524 (659)
T TIGR00954 457 IPLVTPNG-DVLIESLSFEVPSGNHLLICGPNGCGKSSLFRILGELWPVYGGRLTKPA-----------KGKLFYVPQRP 524 (659)
T ss_pred eEEECCCC-CeeeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEeecC-----------CCcEEEECCCC
Confidence 99999743 3599999999999999999999999999999999999999999999874 56799999999
Q ss_pred CcChhcHHHHHhcCC-------CCCCHHHHHHHHHHhchHHHHhcCCCCccccccCCCCCCChHHHHHHHHHHhcccCCC
Q 001411 291 ALFATSIANNILLGK-------EDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPK 363 (1082)
Q Consensus 291 ~l~~~ti~~ni~~g~-------~~~~~~~~~~~~~~~~~~~~i~~lp~g~~t~~g~~g~~LSgGqkqri~lARal~~~~~ 363 (1082)
++|++|++|||.++. +..+++++.++++.+++++++++ |.|+||..+ .+.+||||||||++||||++++|+
T Consensus 525 ~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~-~~g~~~~~~-~~~~LSgGqkQRl~iARal~~~p~ 602 (659)
T TIGR00954 525 YMTLGTLRDQIIYPDSSEDMKRRGLSDKDLEQILDNVQLTHILER-EGGWSAVQD-WMDVLSGGEKQRIAMARLFYHKPQ 602 (659)
T ss_pred CCCCcCHHHHHhcCCChhhhhccCCCHHHHHHHHHHcCCHHHHhh-cCCcccccc-cccCCCHHHHHHHHHHHHHHcCCC
Confidence 999999999999874 23456788999999999998887 999999876 567999999999999999999999
Q ss_pred eeEEeCcccCCCHHHHHHHHHHHHHHcCCCeEEEEccCccccccCCEEEEEe
Q 001411 364 ILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRDVDTIMVLK 415 (1082)
Q Consensus 364 illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~vtH~~~~~~~~d~i~~l~ 415 (1082)
++|||||||+||+++++.+.+.+++. ++|+|+||||++.++.||++++|+
T Consensus 603 illLDEpts~LD~~~~~~l~~~l~~~--~~tvI~isH~~~~~~~~d~il~l~ 652 (659)
T TIGR00954 603 FAILDECTSAVSVDVEGYMYRLCREF--GITLFSVSHRKSLWKYHEYLLYMD 652 (659)
T ss_pred EEEEeCCccCCCHHHHHHHHHHHHHc--CCEEEEEeCchHHHHhCCEEEEEe
Confidence 99999999999999999999999774 799999999999999999999996
|
|
| >cd03289 ABCC_CFTR2 The CFTR subfamily domain 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-54 Score=475.54 Aligned_cols=238 Identities=28% Similarity=0.499 Sum_probs=224.4
Q ss_pred ccEEEEeEEEECCCCCCcccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCccCCCCCHHHHhcc
Q 001411 833 GNIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRK 912 (1082)
Q Consensus 833 g~I~~~~Vs~~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR~~ 912 (1082)
|.|+|+||+++|+.. +.++|+|+||+|++||++||+|+||||||||+++|+|+++ .+|+|.|||+++.+++...+|++
T Consensus 1 g~i~~~nls~~~~~~-~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~~G~I~i~g~~i~~~~~~~lr~~ 78 (275)
T cd03289 1 GQMTVKDLTAKYTEG-GNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGDIQIDGVSWNSVPLQKWRKA 78 (275)
T ss_pred CeEEEEEEEEEeCCC-CCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEhhhCCHHHHhhh
Confidence 569999999999632 3569999999999999999999999999999999999998 78999999999999999999999
Q ss_pred eEEEcccCccccccHHHHhccCCCCCCHHHHHHHHHHhcHHHHHhhCcccccccccCCCCCCChhHHHHHHHHHHHccCC
Q 001411 913 IGLVQQEPALFSTTIYENIKYGNEDASEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNP 992 (1082)
Q Consensus 913 i~~VpQdp~Lf~gTIreNl~~~~~~~~d~ei~~al~~a~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlaLARAlL~~~ 992 (1082)
|+||||+|.+|++|+++|+++.. ..++++++++++.+++.+++.++|++||+.++++|.+||||||||+|||||++++|
T Consensus 79 i~~v~q~~~lf~~tv~~nl~~~~-~~~~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRall~~p 157 (275)
T cd03289 79 FGVIPQKVFIFSGTFRKNLDPYG-KWSDEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKA 157 (275)
T ss_pred EEEECCCcccchhhHHHHhhhcc-CCCHHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCC
Confidence 99999999999999999998643 35788999999999999999999999999999999999999999999999999999
Q ss_pred CEEEeeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhccCEEEEEeCCEEEEecChHHHhhhccchHHHHHHH
Q 001411 993 SILLLDEATSALDTASENLIQEALDKLMEGRTTIMVAHRLSTIRNADKIAVLQQGKVAEIGSHEQLLRKENGIYKQLIRL 1072 (1082)
Q Consensus 993 ~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~~DrI~Vl~~G~ive~G~~~eLl~~~~g~f~~l~~~ 1072 (1082)
+||||||||++||+.+++.+++.|++.++++|+|+||||++++..||||+||++|+++++|+|++|++ ..+.|++++..
T Consensus 158 ~illlDEpts~LD~~~~~~l~~~l~~~~~~~tii~isH~~~~i~~~dri~vl~~G~i~~~g~~~~l~~-~~~~~~~~~~~ 236 (275)
T cd03289 158 KILLLDEPSAHLDPITYQVIRKTLKQAFADCTVILSEHRIEAMLECQRFLVIEENKVRQYDSIQKLLN-EKSHFKQAISP 236 (275)
T ss_pred CEEEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEECCHHHHHhCCEEEEecCCeEeecCCHHHHhh-CcHHHHHHHhh
Confidence 99999999999999999999999999888999999999999999999999999999999999999998 56899999876
Q ss_pred hh
Q 001411 1073 QQ 1074 (1082)
Q Consensus 1073 ~~ 1074 (1082)
..
T Consensus 237 ~~ 238 (275)
T cd03289 237 SD 238 (275)
T ss_pred cc
Confidence 54
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-51 Score=408.92 Aligned_cols=215 Identities=33% Similarity=0.564 Sum_probs=188.7
Q ss_pred cEEEEEEEEECCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHHhCCCCCCcEEEECCeeCC-CCCHHHHhhhc
Q 001411 205 QIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLK-SLQLKWLREQM 283 (1082)
Q Consensus 205 ~i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~-~~~~~~~~~~i 283 (1082)
-|+++|++++|++. .+|+|||+++++||.++|+||||||||||+++|.|+.+|++|+|.+||.++. ..+...+|+++
T Consensus 2 mi~i~~l~K~fg~~--~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~R~~v 79 (240)
T COG1126 2 MIEIKNLSKSFGDK--EVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRKV 79 (240)
T ss_pred eEEEEeeeEEeCCe--EEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHHHHhc
Confidence 38999999999853 4999999999999999999999999999999999999999999999998774 33788899999
Q ss_pred eEEccCCCcChh-cHHHHHhcCCCC---CC----HHHHHHHHHHhchHHHHhcCCCCccccccCCCCCCChHHHHHHHHH
Q 001411 284 GLVSQEPALFAT-SIANNILLGKED---AS----MDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIA 355 (1082)
Q Consensus 284 ~~v~Q~~~l~~~-ti~~ni~~g~~~---~~----~~~~~~~~~~~~~~~~i~~lp~g~~t~~g~~g~~LSgGqkqri~lA 355 (1082)
|+|+|+..||+. |+.||+.++.-. .+ .++-.+.++++++.+..+..| .+||||||||||||
T Consensus 80 GmVFQ~fnLFPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP-----------~qLSGGQqQRVAIA 148 (240)
T COG1126 80 GMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKADAYP-----------AQLSGGQQQRVAIA 148 (240)
T ss_pred CeecccccccccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhhCc-----------cccCcHHHHHHHHH
Confidence 999999999988 999999987321 11 223334455666666666555 58999999999999
Q ss_pred HhcccCCCeeEEeCcccCCCHHHHHHHHHHHHHHcC-CCeEEEEccCcccccc-CCEEEEEeCCEEEEecCchhhhhcC
Q 001411 356 RAVLRNPKILLLDEATSALDAESELIVQRALEKIMS-NRTTIVVAHRLSTVRD-VDTIMVLKNGQVVESGTHVDLISKG 432 (1082)
Q Consensus 356 Ral~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~-~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~ 432 (1082)
|||..+|+++|+|||||||||+....+.+.++++.+ |.|.|+|||.+.+.+. ||||+.|++|+|+++|+++++..+.
T Consensus 149 RALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~FAr~VadrviFmd~G~iie~g~p~~~f~~p 227 (240)
T COG1126 149 RALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGFAREVADRVIFMDQGKIIEEGPPEEFFDNP 227 (240)
T ss_pred HHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhHHHHHhhheEEEeeCCEEEEecCHHHHhcCC
Confidence 999999999999999999999999999999999864 7899999999999987 7999999999999999999998764
|
|
| >COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-51 Score=405.92 Aligned_cols=217 Identities=35% Similarity=0.570 Sum_probs=192.2
Q ss_pred cEEEEeEEEECCCCCCcccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCccCC-CCCHHHHhcc
Q 001411 834 NIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIR-TLNLRSLRRK 912 (1082)
Q Consensus 834 ~I~~~~Vs~~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~-~i~~~~lR~~ 912 (1082)
.|+++||+.+|. +..||+|||++|++||.++|+||||||||||+++|.++.+|++|+|.|||.++. +.+...+|++
T Consensus 2 mi~i~~l~K~fg---~~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~R~~ 78 (240)
T COG1126 2 MIEIKNLSKSFG---DKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRK 78 (240)
T ss_pred eEEEEeeeEEeC---CeEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHHHHh
Confidence 489999999996 457999999999999999999999999999999999999999999999998764 3378899999
Q ss_pred eEEEcccCccccc-cHHHHhccCCC---CCCHH----HHHHHHHHhcHHHHHhhCcccccccccCCCCCCChhHHHHHHH
Q 001411 913 IGLVQQEPALFST-TIYENIKYGNE---DASEI----ELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAI 984 (1082)
Q Consensus 913 i~~VpQdp~Lf~g-TIreNl~~~~~---~~~d~----ei~~al~~a~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlaL 984 (1082)
+|+|+|+..||+. |+.||+.++-- ..+.+ .-.+.|+++|+.+.....| .+||||||||+||
T Consensus 79 vGmVFQ~fnLFPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP-----------~qLSGGQqQRVAI 147 (240)
T COG1126 79 VGMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKADAYP-----------AQLSGGQQQRVAI 147 (240)
T ss_pred cCeecccccccccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhhCc-----------cccCcHHHHHHHH
Confidence 9999999999975 99999987521 12222 2334567777777766665 6899999999999
Q ss_pred HHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEecCchhhhc-cCEEEEEeCCEEEEecChHHHhhhc
Q 001411 985 ARAILKNPSILLLDEATSALDTASENLIQEALDKLM-EGRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGSHEQLLRKE 1062 (1082)
Q Consensus 985 ARAlL~~~~ILlLDEaTS~LD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~G~~~eLl~~~ 1062 (1082)
||||..+|+++++|||||+|||+.-..|.+.++++. .|.|+|+|||.+...++ ||||+.||+|+|+|.|+|+++..++
T Consensus 148 ARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~FAr~VadrviFmd~G~iie~g~p~~~f~~p 227 (240)
T COG1126 148 ARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGFAREVADRVIFMDQGKIIEEGPPEEFFDNP 227 (240)
T ss_pred HHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhHHHHHhhheEEEeeCCEEEEecCHHHHhcCC
Confidence 999999999999999999999999999999999986 58899999999999987 9999999999999999999999876
Q ss_pred cc
Q 001411 1063 NG 1064 (1082)
Q Consensus 1063 ~g 1064 (1082)
..
T Consensus 228 ~~ 229 (240)
T COG1126 228 KS 229 (240)
T ss_pred CC
Confidence 54
|
|
| >PRK14257 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-49 Score=446.88 Aligned_cols=227 Identities=30% Similarity=0.505 Sum_probs=201.0
Q ss_pred ccccccEEEEeEEEECCCCCCcccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccc-----CCccEEEECCccCC-
Q 001411 829 TEIKGNIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYD-----PISGTVLIDGYDIR- 902 (1082)
Q Consensus 829 ~~~~g~I~~~~Vs~~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~-----p~~G~I~idG~di~- 902 (1082)
|+..+.|+|+|++++|+. ...++|+|+||+|++||++||+||||||||||+++|+|+++ |++|+|.|||+++.
T Consensus 75 ~~~~~~i~~~nls~~y~~-~~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~ 153 (329)
T PRK14257 75 FNHANVFEIRNFNFWYMN-RTKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRS 153 (329)
T ss_pred CCcCceEEEEeeEEEecC-CCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccc
Confidence 567789999999999963 23579999999999999999999999999999999999997 57999999999997
Q ss_pred -CCCHHHHhcceEEEcccCccccccHHHHhccCCC--CCCHHHHH-----HHHHHhcHHHHHhhCcccccccccCCCCCC
Q 001411 903 -TLNLRSLRRKIGLVQQEPALFSTTIYENIKYGNE--DASEIELM-----KATKAANAHGFISRMPEGYQSHVGDRGVQL 974 (1082)
Q Consensus 903 -~i~~~~lR~~i~~VpQdp~Lf~gTIreNl~~~~~--~~~d~ei~-----~al~~a~l~~~i~~lp~gldt~v~e~G~~L 974 (1082)
++++..+|++++||||+|.+|++|+++||+++.. ..++++.+ ++++.+++ ++++++.+++.|.+|
T Consensus 154 ~~~~~~~lr~~i~~v~q~~~~~~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~~L-------~~~l~~~~~~~~~~L 226 (329)
T PRK14257 154 KKISSLELRTRIGMVFQKPTPFEMSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAAL-------WDEVKDDLDKAGNAL 226 (329)
T ss_pred cccchHhhhccEEEEecCCccCCCcHHHHHHhHHHhcCCChHHHHHHHHHHHHHHcCC-------cchhhhhhhCCcccC
Confidence 4566789999999999999999999999996421 24455543 34455543 445678899999999
Q ss_pred ChhHHHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhc-cCEEEEEeCCEEEEec
Q 001411 975 SGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLMEGRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIG 1053 (1082)
Q Consensus 975 SgGQrQrlaLARAlL~~~~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~G 1053 (1082)
|||||||+|||||++++|+|||||||||+||+++.+.+++.|++.++++|+|+|||+++++.+ ||||+||++|+|+|.|
T Consensus 227 SgGqkqRl~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~~~Tii~iTH~l~~i~~~~Driivl~~G~i~e~g 306 (329)
T PRK14257 227 SGGQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKKKYSIIIVTHSMAQAQRISDETVFFYQGWIEEAG 306 (329)
T ss_pred CHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeC
Confidence 999999999999999999999999999999999999999999998889999999999999987 9999999999999999
Q ss_pred ChHHHhhhcc
Q 001411 1054 SHEQLLRKEN 1063 (1082)
Q Consensus 1054 ~~~eLl~~~~ 1063 (1082)
+|+++...+.
T Consensus 307 ~~~~l~~~~~ 316 (329)
T PRK14257 307 ETKTIFIHPK 316 (329)
T ss_pred CHHHHhcCCC
Confidence 9999987544
|
|
| >KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-49 Score=439.86 Aligned_cols=199 Identities=29% Similarity=0.389 Sum_probs=165.9
Q ss_pred cEEEEeEEEECCCCCCcccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCccCCCCCHHHHhcce
Q 001411 834 NIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRKI 913 (1082)
Q Consensus 834 ~I~~~~Vs~~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR~~i 913 (1082)
-|.|+||+|.|++. ..++++++|-|.++++||+|||||+|||||++++.+...|+.|.|.-.-. .++
T Consensus 389 vi~~~nv~F~y~~~--~~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p~~G~vs~~~H-----------~~~ 455 (614)
T KOG0927|consen 389 VIMVQNVSFGYSDN--PMIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQPTIGMVSRHSH-----------NKL 455 (614)
T ss_pred eEEEeccccCCCCc--chhhhhhhcccCcccceeEecCCCCchhhhHHHHhhcccccccccccccc-----------ccc
Confidence 49999999999743 36899999999999999999999999999999999999999999865432 234
Q ss_pred EEEccc---CccccccHHHHhccCCCC-CCHHHHHHHHHHhcHHHHHhhCcccccccccCCCCCCChhHHHHHHHHHHHc
Q 001411 914 GLVQQE---PALFSTTIYENIKYGNED-ASEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAIL 989 (1082)
Q Consensus 914 ~~VpQd---p~Lf~gTIreNl~~~~~~-~~d~ei~~al~~a~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlaLARAlL 989 (1082)
++.-|. -..++.|.-+++.+..++ ...+++...+.+.|+..-.+ +.++ .+||+|||.|++.||.++
T Consensus 456 ~~y~Qh~~e~ldl~~s~le~~~~~~~~~~~~e~~r~ilgrfgLtgd~q------~~p~----~~LS~Gqr~rVlFa~l~~ 525 (614)
T KOG0927|consen 456 PRYNQHLAEQLDLDKSSLEFMMPKFPDEKELEEMRSILGRFGLTGDAQ------VVPM----SQLSDGQRRRVLFARLAV 525 (614)
T ss_pred hhhhhhhHhhcCcchhHHHHHHHhccccchHHHHHHHHHHhCCCcccc------ccch----hhcccccchhHHHHHHHh
Confidence 444443 345678888999877664 66778888888988864333 2333 579999999999999999
Q ss_pred cCCCEEEeeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhc-cCEEEEEeCCEEEEe-cChHH
Q 001411 990 KNPSILLLDEATSALDTASENLIQEALDKLMEGRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEI-GSHEQ 1057 (1082)
Q Consensus 990 ~~~~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~-G~~~e 1057 (1082)
+.|.||||||||++||.+|-..+.++|.++- -+||+|||+...|.. +++|.+.++|.+... |....
T Consensus 526 kqP~lLlLDEPtnhLDi~tid~laeaiNe~~--Ggvv~vSHDfrlI~qVaeEi~~c~~~~~~~~~G~i~~ 593 (614)
T KOG0927|consen 526 KQPHLLLLDEPTNHLDIETIDALAEAINEFP--GGVVLVSHDFRLISQVAEEIWVCENGTVTKWDGDIEI 593 (614)
T ss_pred cCCcEEEecCCCcCCCchhHHHHHHHHhccC--CceeeeechhhHHHHHHHHhHhhccCceeecCccHHH
Confidence 9999999999999999999999999998863 489999999999976 999999999988764 55433
|
|
| >COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-49 Score=412.69 Aligned_cols=226 Identities=37% Similarity=0.599 Sum_probs=193.8
Q ss_pred EEEEeEEEECCCCC--CcccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCccCCCCC---HHHH
Q 001411 835 IELRNVSFKYPVRP--DITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLN---LRSL 909 (1082)
Q Consensus 835 I~~~~Vs~~Y~~~~--~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~---~~~l 909 (1082)
|+|++|++.|+... ..++|+||||+|++||+.||+|+||||||||++++.++-+|++|+|.+||.|+..++ +..+
T Consensus 2 I~l~~vsK~~~~~~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr~~ 81 (339)
T COG1135 2 IELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQL 81 (339)
T ss_pred eEEEeeeeeeccCCCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHHHH
Confidence 89999999998521 246999999999999999999999999999999999999999999999998888776 5667
Q ss_pred hcceEEEcccCcccc-ccHHHHhccCCC--CCCHHH----HHHHHHHhcHHHHHhhCcccccccccCCCCCCChhHHHHH
Q 001411 910 RRKIGLVQQEPALFS-TTIYENIKYGNE--DASEIE----LMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRV 982 (1082)
Q Consensus 910 R~~i~~VpQdp~Lf~-gTIreNl~~~~~--~~~d~e----i~~al~~a~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrl 982 (1082)
|++||+|+|++.|++ -|+.+|+.|... ..+.+| +.+.|+.+|+.|.-.+ -..+||||||||+
T Consensus 82 R~~IGMIFQhFnLLssrTV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~dk~~~-----------yP~qLSGGQKQRV 150 (339)
T COG1135 82 RQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQRVAELLELVGLSDKADR-----------YPAQLSGGQKQRV 150 (339)
T ss_pred HhhccEEeccccccccchHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCChhhhcc-----------CchhcCcchhhHH
Confidence 899999999999997 799999998632 233444 4455566666555444 3478999999999
Q ss_pred HHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHhc--CCceEEEEecCchhhhc-cCEEEEEeCCEEEEecChHHHh
Q 001411 983 AIARAILKNPSILLLDEATSALDTASENLIQEALDKLM--EGRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGSHEQLL 1059 (1082)
Q Consensus 983 aLARAlL~~~~ILlLDEaTS~LD~~te~~I~~~l~~~~--~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~G~~~eLl 1059 (1082)
+|||||..+|+||+.|||||+|||+|-+.|.+.|++.- -|-|+++|||-++.+++ ||||.||++|+|+|.|+-.++.
T Consensus 151 aIARALa~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm~Vvk~ic~rVavm~~G~lvE~G~v~~vF 230 (339)
T COG1135 151 AIARALANNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEMEVVKRICDRVAVLDQGRLVEEGTVSEVF 230 (339)
T ss_pred HHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHhhhheEeeCCEEEEeccHHHhh
Confidence 99999999999999999999999999999999999864 37899999999999987 9999999999999999999999
Q ss_pred hhccch-HHHHHH
Q 001411 1060 RKENGI-YKQLIR 1071 (1082)
Q Consensus 1060 ~~~~g~-f~~l~~ 1071 (1082)
.++... =++++.
T Consensus 231 ~~Pk~~~t~~fi~ 243 (339)
T COG1135 231 ANPKHAITQEFIG 243 (339)
T ss_pred cCcchHHHHHHHH
Confidence 876443 344443
|
|
| >cd03289 ABCC_CFTR2 The CFTR subfamily domain 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-48 Score=427.49 Aligned_cols=236 Identities=27% Similarity=0.479 Sum_probs=218.9
Q ss_pred CcEEEEEEEEECCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHHhCCCCCCcEEEECCeeCCCCCHHHHhhhc
Q 001411 204 GQIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQM 283 (1082)
Q Consensus 204 ~~i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i 283 (1082)
+.|+++|++++|++...++|+|+||+|++||+++|+|+||||||||+++|.|+++ ++|+|.+||.++..++...+|+.|
T Consensus 1 g~i~~~nls~~~~~~~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~~G~I~i~g~~i~~~~~~~lr~~i 79 (275)
T cd03289 1 GQMTVKDLTAKYTEGGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGDIQIDGVSWNSVPLQKWRKAF 79 (275)
T ss_pred CeEEEEEEEEEeCCCCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEhhhCCHHHHhhhE
Confidence 3589999999997544459999999999999999999999999999999999998 799999999999989999999999
Q ss_pred eEEccCCCcChhcHHHHHhcCCCCCCHHHHHHHHHHhchHHHHhcCCCCccccccCCCCCCChHHHHHHHHHHhcccCCC
Q 001411 284 GLVSQEPALFATSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPK 363 (1082)
Q Consensus 284 ~~v~Q~~~l~~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~lp~g~~t~~g~~g~~LSgGqkqri~lARal~~~~~ 363 (1082)
+||||+|++|++|+++|+....+ .+.++++++++.+++.+++.++|++++|.++++|.+||||||||++||||++++|+
T Consensus 80 ~~v~q~~~lf~~tv~~nl~~~~~-~~~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRall~~p~ 158 (275)
T cd03289 80 GVIPQKVFIFSGTFRKNLDPYGK-WSDEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKAK 158 (275)
T ss_pred EEECCCcccchhhHHHHhhhccC-CCHHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999964322 35678999999999999999999999999999999999999999999999999999
Q ss_pred eeEEeCcccCCCHHHHHHHHHHHHHHcCCCeEEEEccCccccccCCEEEEEeCCEEEEecCchhhhhcCchhHHHHHh
Q 001411 364 ILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRDVDTIMVLKNGQVVESGTHVDLISKGGEYAALVNL 441 (1082)
Q Consensus 364 illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~vtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~ 441 (1082)
|+||||||++||+.+.+.+.+.|++..+++|+|+||||++.+..||+|++|++|++++.|+++++++..+.|++++..
T Consensus 159 illlDEpts~LD~~~~~~l~~~l~~~~~~~tii~isH~~~~i~~~dri~vl~~G~i~~~g~~~~l~~~~~~~~~~~~~ 236 (275)
T cd03289 159 ILLLDEPSAHLDPITYQVIRKTLKQAFADCTVILSEHRIEAMLECQRFLVIEENKVRQYDSIQKLLNEKSHFKQAISP 236 (275)
T ss_pred EEEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEECCHHHHHhCCEEEEecCCeEeecCCHHHHhhCcHHHHHHHhh
Confidence 999999999999999999999999877789999999999999889999999999999999999999977777777653
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-49 Score=399.02 Aligned_cols=214 Identities=33% Similarity=0.580 Sum_probs=191.2
Q ss_pred EEEEEEEEECCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHHhCCCCCCcEEEECCeeCCCCCHHHHhhhceE
Q 001411 206 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGL 285 (1082)
Q Consensus 206 i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 285 (1082)
|+|+|||+.|.+ ..+++|+||+|++||+++++|||||||||++|+|.|+++|++|+|++||+++++++...+|++|||
T Consensus 2 I~~~nvsk~y~~--~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~LRr~IGY 79 (309)
T COG1125 2 IEFENVSKRYGN--KKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRRKIGY 79 (309)
T ss_pred ceeeeeehhcCC--ceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHHHHhhhh
Confidence 789999999984 349999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EccCCCcChh-cHHHHHhcCCCCC--C----HHHHHHHHHHhchH--HHHhcCCCCccccccCCCCCCChHHHHHHHHHH
Q 001411 286 VSQEPALFAT-SIANNILLGKEDA--S----MDRVIEAAKAANAH--SFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIAR 356 (1082)
Q Consensus 286 v~Q~~~l~~~-ti~~ni~~g~~~~--~----~~~~~~~~~~~~~~--~~i~~lp~g~~t~~g~~g~~LSgGqkqri~lAR 356 (1082)
|-|+.-||+. ||.|||++-..-. + .+++.+.+++.+++ ++..+.| .+|||||+|||.+||
T Consensus 80 viQqigLFPh~Tv~eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP-----------~eLSGGQQQRVGv~R 148 (309)
T COG1125 80 VIQQIGLFPHLTVAENIATVPKLLGWDKERIKKRADELLDLVGLDPSEYADRYP-----------HELSGGQQQRVGVAR 148 (309)
T ss_pred hhhhcccCCCccHHHHHHhhhhhcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCc-----------hhcCcchhhHHHHHH
Confidence 9999999987 9999998753211 2 23455666666664 3555665 489999999999999
Q ss_pred hcccCCCeeEEeCcccCCCHHHHHHHHHHHHHHcC--CCeEEEEccCcccc-ccCCEEEEEeCCEEEEecCchhhhhcC
Q 001411 357 AVLRNPKILLLDEATSALDAESELIVQRALEKIMS--NRTTIVVAHRLSTV-RDVDTIMVLKNGQVVESGTHVDLISKG 432 (1082)
Q Consensus 357 al~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~vtH~~~~~-~~~d~i~~l~~G~i~~~g~~~~l~~~~ 432 (1082)
||+.+|+|+|+|||++||||-++..+++.+.++.+ ++|+|+|||++++. +.+|||.+|++|+++..++|++++++.
T Consensus 149 ALAadP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDidEA~kLadri~vm~~G~i~Q~~~P~~il~~P 227 (309)
T COG1125 149 ALAADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDIDEALKLADRIAVMDAGEIVQYDTPDEILANP 227 (309)
T ss_pred HHhcCCCeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHHHHHhhhceEEEecCCeEEEeCCHHHHHhCc
Confidence 99999999999999999999999999999988754 79999999999976 569999999999999999999999874
|
|
| >COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-49 Score=387.49 Aligned_cols=220 Identities=33% Similarity=0.560 Sum_probs=199.8
Q ss_pred cEEEEeEEEECCCCCCcccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCc-----cEEEECCccCCC--CCH
Q 001411 834 NIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPIS-----GTVLIDGYDIRT--LNL 906 (1082)
Q Consensus 834 ~I~~~~Vs~~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~-----G~I~idG~di~~--i~~ 906 (1082)
.++++|+++.|. +..+|+|||+.|++++.+|++|||||||||++++|.|+.+... |+|.+||.||-+ ++.
T Consensus 7 ~~~~~~l~~yYg---~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d~ 83 (253)
T COG1117 7 AIEVRDLNLYYG---DKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDV 83 (253)
T ss_pred eeEecceeEEEC---chhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCCH
Confidence 589999999996 4579999999999999999999999999999999999999875 999999999976 578
Q ss_pred HHHhcceEEEcccCccccccHHHHhccCCC------CCCHHHHHHHHHHhcHHHHHhhCcccccccccCCCCCCChhHHH
Q 001411 907 RSLRRKIGLVQQEPALFSTTIYENIKYGNE------DASEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQ 980 (1082)
Q Consensus 907 ~~lR~~i~~VpQdp~Lf~gTIreNl~~~~~------~~~d~ei~~al~~a~l~~~i~~lp~gldt~v~e~G~~LSgGQrQ 980 (1082)
-.||+++|+|+|.|--|+.||.||+.||-. ..-|+-++++|+.|.+|+.+.. .+.+.+..|||||+|
T Consensus 84 ~~lRr~vGMVFQkPnPFp~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKD-------rL~~sa~~LSGGQQQ 156 (253)
T COG1117 84 VELRRRVGMVFQKPNPFPMSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKD-------RLHKSALGLSGGQQQ 156 (253)
T ss_pred HHHHHHheeeccCCCCCCchHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHH-------HhhCCccCCChhHHH
Confidence 899999999999999999999999999831 1224558889999999998864 345567789999999
Q ss_pred HHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhc-cCEEEEEeCCEEEEecChHHHh
Q 001411 981 RVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLMEGRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGSHEQLL 1059 (1082)
Q Consensus 981 rlaLARAlL~~~~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~G~~~eLl 1059 (1082)
||||||||.-+|+|||||||||+|||.+-..|.+.|.++.++-|+++|||.+.-... +|+...|-.|+++|+|+-+++.
T Consensus 157 RLcIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk~~yTIviVTHnmqQAaRvSD~taFf~~G~LvE~g~T~~iF 236 (253)
T COG1117 157 RLCIARALAVKPEVLLMDEPTSALDPISTLKIEELITELKKKYTIVIVTHNMQQAARVSDYTAFFYLGELVEFGPTDKIF 236 (253)
T ss_pred HHHHHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHHhccEEEEEeCCHHHHHHHhHhhhhhcccEEEEEcCHHhhh
Confidence 999999999999999999999999999999999999999889999999999988755 9999999999999999999998
Q ss_pred hhcc
Q 001411 1060 RKEN 1063 (1082)
Q Consensus 1060 ~~~~ 1063 (1082)
.++.
T Consensus 237 ~~P~ 240 (253)
T COG1117 237 TNPK 240 (253)
T ss_pred cCcc
Confidence 7553
|
|
| >COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-48 Score=395.35 Aligned_cols=219 Identities=36% Similarity=0.586 Sum_probs=195.1
Q ss_pred EEEEeEEEECCCCCCcccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCccCCCCCHHHHhcceE
Q 001411 835 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRKIG 914 (1082)
Q Consensus 835 I~~~~Vs~~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR~~i~ 914 (1082)
|+|+|||++|. +..+++|+||+|++||.+.++|||||||||+++++.|+++|++|+|+|||.||++++...||++||
T Consensus 2 I~~~nvsk~y~---~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~LRr~IG 78 (309)
T COG1125 2 IEFENVSKRYG---NKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRRKIG 78 (309)
T ss_pred ceeeeeehhcC---CceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHHHHhhh
Confidence 79999999996 557999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcccCcccc-ccHHHHhccCCC---CCCHH----HHHHHHHHhcHH--HHHhhCcccccccccCCCCCCChhHHHHHHH
Q 001411 915 LVQQEPALFS-TTIYENIKYGNE---DASEI----ELMKATKAANAH--GFISRMPEGYQSHVGDRGVQLSGGQKQRVAI 984 (1082)
Q Consensus 915 ~VpQdp~Lf~-gTIreNl~~~~~---~~~d~----ei~~al~~a~l~--~~i~~lp~gldt~v~e~G~~LSgGQrQrlaL 984 (1082)
||-|..-||+ -||.+||.. -| ..+.+ .+.+.++.+++. +|..+.| ..|||||+||+.+
T Consensus 79 YviQqigLFPh~Tv~eNIa~-VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP-----------~eLSGGQQQRVGv 146 (309)
T COG1125 79 YVIQQIGLFPHLTVAENIAT-VPKLLGWDKERIKKRADELLDLVGLDPSEYADRYP-----------HELSGGQQQRVGV 146 (309)
T ss_pred hhhhhcccCCCccHHHHHHh-hhhhcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCc-----------hhcCcchhhHHHH
Confidence 9999999997 599999976 23 23443 445556666664 3555555 6799999999999
Q ss_pred HHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHhcC--CceEEEEecCchhhh-ccCEEEEEeCCEEEEecChHHHhhh
Q 001411 985 ARAILKNPSILLLDEATSALDTASENLIQEALDKLME--GRTTIMVAHRLSTIR-NADKIAVLQQGKVAEIGSHEQLLRK 1061 (1082)
Q Consensus 985 ARAlL~~~~ILlLDEaTS~LD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~-~~DrI~Vl~~G~ive~G~~~eLl~~ 1061 (1082)
||||..+|+||+||||.++|||.|...+|+-+.+..+ ++|+|+|||++++.. -+|||+||++|+|+.+|+|++++++
T Consensus 147 ~RALAadP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDidEA~kLadri~vm~~G~i~Q~~~P~~il~~ 226 (309)
T COG1125 147 ARALAADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDIDEALKLADRIAVMDAGEIVQYDTPDEILAN 226 (309)
T ss_pred HHHHhcCCCeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHHHHHhhhceEEEecCCeEEEeCCHHHHHhC
Confidence 9999999999999999999999999999999988754 799999999999875 5999999999999999999999988
Q ss_pred ccchHHH
Q 001411 1062 ENGIYKQ 1068 (1082)
Q Consensus 1062 ~~g~f~~ 1068 (1082)
+...|-+
T Consensus 227 Pan~FV~ 233 (309)
T COG1125 227 PANDFVE 233 (309)
T ss_pred ccHHHHH
Confidence 7766644
|
|
| >COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-48 Score=407.65 Aligned_cols=216 Identities=35% Similarity=0.569 Sum_probs=191.6
Q ss_pred EEEEEEEEECCCC---CCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHHhCCCCCCcEEEECCeeCCCCCHH---HH
Q 001411 206 IEFSEVCFAYPSR---PHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLK---WL 279 (1082)
Q Consensus 206 i~~~~v~~~y~~~---~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~---~~ 279 (1082)
|++++||+.|+.. ...+|+|+||+|++||+.+|+|+||+|||||++++.++-.|++|+|.+||.++..++.. ..
T Consensus 2 I~l~~vsK~~~~~~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr~~ 81 (339)
T COG1135 2 IELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQL 81 (339)
T ss_pred eEEEeeeeeeccCCCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHHHH
Confidence 7899999999763 23499999999999999999999999999999999999999999999999999877654 56
Q ss_pred hhhceEEccCCCcCh-hcHHHHHhcCCCCC------CHHHHHHHHHHhchHHHHhcCCCCccccccCCCCCCChHHHHHH
Q 001411 280 REQMGLVSQEPALFA-TSIANNILLGKEDA------SMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRI 352 (1082)
Q Consensus 280 ~~~i~~v~Q~~~l~~-~ti~~ni~~g~~~~------~~~~~~~~~~~~~~~~~i~~lp~g~~t~~g~~g~~LSgGqkqri 352 (1082)
|++||+++|++.|++ .||.+|++|..+-+ -.+++.+.++.+++.+..++.| .+|||||||||
T Consensus 82 R~~IGMIFQhFnLLssrTV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~dk~~~yP-----------~qLSGGQKQRV 150 (339)
T COG1135 82 RQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQRVAELLELVGLSDKADRYP-----------AQLSGGQKQRV 150 (339)
T ss_pred HhhccEEeccccccccchHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCChhhhccCc-----------hhcCcchhhHH
Confidence 789999999999998 59999999975422 1346667777777766666555 58999999999
Q ss_pred HHHHhcccCCCeeEEeCcccCCCHHHHHHHHHHHHHHcC--CCeEEEEccCcccccc-CCEEEEEeCCEEEEecCchhhh
Q 001411 353 AIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMS--NRTTIVVAHRLSTVRD-VDTIMVLKNGQVVESGTHVDLI 429 (1082)
Q Consensus 353 ~lARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~ 429 (1082)
+|||||..+|+|||.|||||||||+|.+.|.+.|++..+ +-|+++|||.++.++. ||||.||++|+++|+|+..++.
T Consensus 151 aIARALa~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm~Vvk~ic~rVavm~~G~lvE~G~v~~vF 230 (339)
T COG1135 151 AIARALANNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEMEVVKRICDRVAVLDQGRLVEEGTVSEVF 230 (339)
T ss_pred HHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHhhhheEeeCCEEEEeccHHHhh
Confidence 999999999999999999999999999999999998743 7899999999999987 9999999999999999999998
Q ss_pred hcC
Q 001411 430 SKG 432 (1082)
Q Consensus 430 ~~~ 432 (1082)
.+.
T Consensus 231 ~~P 233 (339)
T COG1135 231 ANP 233 (339)
T ss_pred cCc
Confidence 764
|
|
| >COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-48 Score=384.97 Aligned_cols=220 Identities=30% Similarity=0.486 Sum_probs=197.5
Q ss_pred CcEEEEEEEEECCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHHhCCCCCC-----cEEEECCeeCCC--CCH
Q 001411 204 GQIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTS-----GKILLDGHDLKS--LQL 276 (1082)
Q Consensus 204 ~~i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~-----G~i~~~g~~~~~--~~~ 276 (1082)
..++++|+++.|++ +.+|+|||++|++++++|++|||||||||||+++.++.+..+ |+|.++|+++.+ ++.
T Consensus 6 ~~~~~~~l~~yYg~--~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d~ 83 (253)
T COG1117 6 PAIEVRDLNLYYGD--KHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDV 83 (253)
T ss_pred ceeEecceeEEECc--hhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCCH
Confidence 45899999999984 349999999999999999999999999999999999998875 999999999975 579
Q ss_pred HHHhhhceEEccCCCcChhcHHHHHhcCCCCC------CHHHHHHHHHHhchHHHHhcCCCCccccccCCCCCCChHHHH
Q 001411 277 KWLREQMGLVSQEPALFATSIANNILLGKEDA------SMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQ 350 (1082)
Q Consensus 277 ~~~~~~i~~v~Q~~~l~~~ti~~ni~~g~~~~------~~~~~~~~~~~~~~~~~i~~lp~g~~t~~g~~g~~LSgGqkq 350 (1082)
..+|++||+|+|.|.-|+.||+||+++|..-. -++.+.++++.+.+++.+.. .+.+.+..|||||+|
T Consensus 84 ~~lRr~vGMVFQkPnPFp~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKD-------rL~~sa~~LSGGQQQ 156 (253)
T COG1117 84 VELRRRVGMVFQKPNPFPMSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKD-------RLHKSALGLSGGQQQ 156 (253)
T ss_pred HHHHHHheeeccCCCCCCchHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHH-------HhhCCccCCChhHHH
Confidence 99999999999999999999999999984311 13557888899988877643 345677889999999
Q ss_pred HHHHHHhcccCCCeeEEeCcccCCCHHHHHHHHHHHHHHcCCCeEEEEccCcccccc-CCEEEEEeCCEEEEecCchhhh
Q 001411 351 RIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRD-VDTIMVLKNGQVVESGTHVDLI 429 (1082)
Q Consensus 351 ri~lARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~ 429 (1082)
|++|||||.-+|+|||||||||||||.+...|++.|.+++++-|+|+|||+++...+ +|+...+..|+++|.|+.+++.
T Consensus 157 RLcIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk~~yTIviVTHnmqQAaRvSD~taFf~~G~LvE~g~T~~iF 236 (253)
T COG1117 157 RLCIARALAVKPEVLLMDEPTSALDPISTLKIEELITELKKKYTIVIVTHNMQQAARVSDYTAFFYLGELVEFGPTDKIF 236 (253)
T ss_pred HHHHHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHHhccEEEEEeCCHHHHHHHhHhhhhhcccEEEEEcCHHhhh
Confidence 999999999999999999999999999999999999999989999999999998876 6999999999999999999887
Q ss_pred hcC
Q 001411 430 SKG 432 (1082)
Q Consensus 430 ~~~ 432 (1082)
.+.
T Consensus 237 ~~P 239 (253)
T COG1117 237 TNP 239 (253)
T ss_pred cCc
Confidence 653
|
|
| >cd03288 ABCC_SUR2 The SUR domain 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-47 Score=414.94 Aligned_cols=240 Identities=32% Similarity=0.574 Sum_probs=222.8
Q ss_pred ccccEEEEeEEEECCCCCCcccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCccCCCCCHHHHh
Q 001411 831 IKGNIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLR 910 (1082)
Q Consensus 831 ~~g~I~~~~Vs~~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR 910 (1082)
..|.|+++|++++|+.. ..++|+|+||+|+|||++||+|+||||||||+++|+|+++|++|+|.+||.++.+.+...+|
T Consensus 16 ~~~~i~~~~l~~~~~~~-~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~ 94 (257)
T cd03288 16 LGGEIKIHDLCVRYENN-LKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHTLR 94 (257)
T ss_pred CCceEEEEEEEEEeCCC-CCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCCCCCeEEECCEEhhhCCHHHHh
Confidence 46789999999999732 24699999999999999999999999999999999999999999999999999999988999
Q ss_pred cceEEEcccCccccccHHHHhccCCCCCCHHHHHHHHHHhcHHHHHhhCcccccccccCCCCCCChhHHHHHHHHHHHcc
Q 001411 911 RKIGLVQQEPALFSTTIYENIKYGNEDASEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILK 990 (1082)
Q Consensus 911 ~~i~~VpQdp~Lf~gTIreNl~~~~~~~~d~ei~~al~~a~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlaLARAlL~ 990 (1082)
++++|++|+|.+|++|+++|+.+.. ...+++++++++.+++.+++..+|.|+++.+++.+.+||+|||||++||||+++
T Consensus 95 ~~i~~v~q~~~l~~~tv~~nl~~~~-~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~G~~qrl~laral~~ 173 (257)
T cd03288 95 SRLSIILQDPILFSGSIRFNLDPEC-KCTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFVR 173 (257)
T ss_pred hhEEEECCCCcccccHHHHhcCcCC-CCCHHHHHHHHHHhCcHHHHhhcccccCcEeccCCCcCCHHHHHHHHHHHHHhc
Confidence 9999999999999999999998742 234567888899999999999999999999999999999999999999999999
Q ss_pred CCCEEEeeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhccCEEEEEeCCEEEEecChHHHhhhccchHHHHH
Q 001411 991 NPSILLLDEATSALDTASENLIQEALDKLMEGRTTIMVAHRLSTIRNADKIAVLQQGKVAEIGSHEQLLRKENGIYKQLI 1070 (1082)
Q Consensus 991 ~~~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~~DrI~Vl~~G~ive~G~~~eLl~~~~g~f~~l~ 1070 (1082)
+|++|||||||++||+++.+.+.+.+++..+++|+|++||+++.+..||||++|++|++++.|+++++.+..++.|+.++
T Consensus 174 ~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~~~~~~~~~~ 253 (257)
T cd03288 174 KSSILIMDEATASIDMATENILQKVVMTAFADRTVVTIAHRVSTILDADLVLVLSRGILVECDTPENLLAQEDGVFASLV 253 (257)
T ss_pred CCCEEEEeCCccCCCHHHHHHHHHHHHHhcCCCEEEEEecChHHHHhCCEEEEEECCEEEEeCCHHHHHhccchHHHHHH
Confidence 99999999999999999999999999987678999999999999988999999999999999999999987778899987
Q ss_pred HH
Q 001411 1071 RL 1072 (1082)
Q Consensus 1071 ~~ 1072 (1082)
..
T Consensus 254 ~~ 255 (257)
T cd03288 254 RT 255 (257)
T ss_pred hc
Confidence 64
|
The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. |
| >cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-47 Score=411.10 Aligned_cols=235 Identities=47% Similarity=0.798 Sum_probs=217.2
Q ss_pred EEEEeEEEECCCCCCcccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCccCCCCCHHHHhcceE
Q 001411 835 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRKIG 914 (1082)
Q Consensus 835 I~~~~Vs~~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR~~i~ 914 (1082)
|+++||+++|+.. ..++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+...+|++++
T Consensus 1 i~~~~l~~~~~~~-~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (237)
T cd03252 1 ITFEHVRFRYKPD-GPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRRQVG 79 (237)
T ss_pred CEEEEEEEecCCC-CccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehHhcCHHHHhhcEE
Confidence 5789999999632 357999999999999999999999999999999999999999999999999998888888999999
Q ss_pred EEcccCccccccHHHHhccCCCCCCHHHHHHHHHHhcHHHHHhhCcccccccccCCCCCCChhHHHHHHHHHHHccCCCE
Q 001411 915 LVQQEPALFSTTIYENIKYGNEDASEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSI 994 (1082)
Q Consensus 915 ~VpQdp~Lf~gTIreNl~~~~~~~~d~ei~~al~~a~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlaLARAlL~~~~I 994 (1082)
|+||++.+|+.|+++|+.++.+..+.+++.++++..++.+++..+|.|+++.....+.+||||||||++||||++++|++
T Consensus 80 ~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~l 159 (237)
T cd03252 80 VVLQENVLFNRSIRDNIALADPGMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPRI 159 (237)
T ss_pred EEcCCchhccchHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHHHHHHHHHhhCCCE
Confidence 99999999999999999886544556677788888899999999999999999889999999999999999999999999
Q ss_pred EEeeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhccCEEEEEeCCEEEEecChHHHhhhccchHHHHHH
Q 001411 995 LLLDEATSALDTASENLIQEALDKLMEGRTTIMVAHRLSTIRNADKIAVLQQGKVAEIGSHEQLLRKENGIYKQLIR 1071 (1082)
Q Consensus 995 LlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~~DrI~Vl~~G~ive~G~~~eLl~~~~g~f~~l~~ 1071 (1082)
|||||||++||+.+.+.+.+.|++..+++|+|++||+++.+..||+|++|++|++++.|+++++++ ..+.|+.+++
T Consensus 160 lllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~-~~~~~~~~~~ 235 (237)
T cd03252 160 LIFDEATSALDYESEHAIMRNMHDICAGRTVIIIAHRLSTVKNADRIIVMEKGRIVEQGSHDELLA-ENGLYAYLYQ 235 (237)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHhCCEEEEEECCEEEEEcCHHHHHh-ccChHHHHHh
Confidence 999999999999999999999999877899999999999998899999999999999999999997 4788888775
|
coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. |
| >KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-45 Score=447.01 Aligned_cols=198 Identities=27% Similarity=0.437 Sum_probs=168.2
Q ss_pred cccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccC--CccEEEECCccCCCCCHHHHhcceEEEcccCc-ccccc
Q 001411 850 ITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDP--ISGTVLIDGYDIRTLNLRSLRRKIGLVQQEPA-LFSTT 926 (1082)
Q Consensus 850 ~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p--~~G~I~idG~di~~i~~~~lR~~i~~VpQdp~-Lf~gT 926 (1082)
+..|+|||=-++||.-.|++|+||||||||+++|.+=.+- .+|+|+|||.+..+ +..++.+|||.|++. +=.-|
T Consensus 804 ~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~G~I~Gdi~i~G~p~~q---~tF~R~~GYvqQ~DiH~~~~T 880 (1391)
T KOG0065|consen 804 RQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTGGYIEGDILISGFPKDQ---ETFARVSGYVEQQDIHSPELT 880 (1391)
T ss_pred eEhhhcCceEecCCceeehhcCCCCchHHHHHHHhcCcccceEEeEEEECCeeCch---hhhccccceeecccccCcccc
Confidence 4689999999999999999999999999999999987543 47999999998765 789999999999774 55679
Q ss_pred HHHHhccCC-----CCCCHHH----HHHHHHHhcHHHHHhhCcccccccccCCCCCCChhHHHHHHHHHHHccCC-CEEE
Q 001411 927 IYENIKYGN-----EDASEIE----LMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNP-SILL 996 (1082)
Q Consensus 927 IreNl~~~~-----~~~~d~e----i~~al~~a~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlaLARAlL~~~-~ILl 996 (1082)
|||-|.+.. .+.+++| +.++.+..++.++ =|..||..|..||..||.||.||=-|+.|| .||.
T Consensus 881 VrESL~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~~~-------~daiVG~~G~GLs~eQRKrLTIgVELvA~P~~ilF 953 (1391)
T KOG0065|consen 881 VRESLRFSAALRLPKEVSDEEKYEYVEEVIELLELKEY-------ADALVGLPGSGLSTEQRKRLTIGVELVANPSSILF 953 (1391)
T ss_pred hHHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHhCchhh-------hhhhccCCCCCCCHHHhceeeEEEEEecCCceeEE
Confidence 999997752 2344444 4455555555444 356799999999999999999999999999 9999
Q ss_pred eeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEecCchhh--hccCEEEEEeC-CEEEEecChHH
Q 001411 997 LDEATSALDTASENLIQEALDKLM-EGRTTIMVAHRLSTI--RNADKIAVLQQ-GKVAEIGSHEQ 1057 (1082)
Q Consensus 997 LDEaTS~LD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti--~~~DrI~Vl~~-G~ive~G~~~e 1057 (1082)
||||||+||+.+...|.+.+|+.. .|+||++.=|.++.. +.+|+++.|+. |+.|-+|++.+
T Consensus 954 LDEPTSGLDsqaA~~i~~~lrkla~tGqtIlCTIHQPS~~ife~FD~LLLLkrGGqtVY~G~lG~ 1018 (1391)
T KOG0065|consen 954 LDEPTSGLDSQAAAIVMRFLRKLADTGQTILCTIHQPSIDIFEAFDELLLLKRGGQTVYFGPLGE 1018 (1391)
T ss_pred ecCCCCCccHHHHHHHHHHHHHHHhcCCeEEEEecCCcHHHHHHHhHHHHHhcCCeEEEecCccc
Confidence 999999999999999999999976 699999999999874 67999999974 79999988654
|
|
| >PRK14257 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-46 Score=420.49 Aligned_cols=222 Identities=31% Similarity=0.516 Sum_probs=194.3
Q ss_pred CCcEEEEEEEEECCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHHhCCC-----CCCcEEEECCeeCCC--CC
Q 001411 203 AGQIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYE-----PTSGKILLDGHDLKS--LQ 275 (1082)
Q Consensus 203 ~~~i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~-----~~~G~i~~~g~~~~~--~~ 275 (1082)
.+.|+++|++++|++...++|+|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.+||+++.. .+
T Consensus 78 ~~~i~~~nls~~y~~~~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~~~ 157 (329)
T PRK14257 78 ANVFEIRNFNFWYMNRTKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKIS 157 (329)
T ss_pred CceEEEEeeEEEecCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccc
Confidence 35799999999997544469999999999999999999999999999999999996 579999999999973 44
Q ss_pred HHHHhhhceEEccCCCcChhcHHHHHhcCCCC--CCHHH-----HHHHHHHhchHHHHhcCCCCccccccCCCCCCChHH
Q 001411 276 LKWLREQMGLVSQEPALFATSIANNILLGKED--ASMDR-----VIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQ 348 (1082)
Q Consensus 276 ~~~~~~~i~~v~Q~~~l~~~ti~~ni~~g~~~--~~~~~-----~~~~~~~~~~~~~i~~lp~g~~t~~g~~g~~LSgGq 348 (1082)
...+|+.++||||+||+|++|++|||.|+... .++++ +.++++.++ +++++++.++++|.+|||||
T Consensus 158 ~~~lr~~i~~v~q~~~~~~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~~-------L~~~l~~~~~~~~~~LSgGq 230 (329)
T PRK14257 158 SLELRTRIGMVFQKPTPFEMSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAA-------LWDEVKDDLDKAGNALSGGQ 230 (329)
T ss_pred hHhhhccEEEEecCCccCCCcHHHHHHhHHHhcCCChHHHHHHHHHHHHHHcC-------CcchhhhhhhCCcccCCHHH
Confidence 56788999999999999999999999987432 22222 233444443 44556788999999999999
Q ss_pred HHHHHHHHhcccCCCeeEEeCcccCCCHHHHHHHHHHHHHHcCCCeEEEEccCcccccc-CCEEEEEeCCEEEEecCchh
Q 001411 349 KQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRD-VDTIMVLKNGQVVESGTHVD 427 (1082)
Q Consensus 349 kqri~lARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~ 427 (1082)
|||++||||++++|+||||||||++||+++.+.+.+.|+++.+++|+|+|||+++++.. ||+|++|++|++++.|++++
T Consensus 231 kqRl~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~~~Tii~iTH~l~~i~~~~Driivl~~G~i~e~g~~~~ 310 (329)
T PRK14257 231 QQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKKKYSIIIVTHSMAQAQRISDETVFFYQGWIEEAGETKT 310 (329)
T ss_pred HHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999999998888999999999999877 99999999999999999999
Q ss_pred hhhc
Q 001411 428 LISK 431 (1082)
Q Consensus 428 l~~~ 431 (1082)
+...
T Consensus 311 l~~~ 314 (329)
T PRK14257 311 IFIH 314 (329)
T ss_pred HhcC
Confidence 8764
|
|
| >cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-46 Score=403.53 Aligned_cols=234 Identities=50% Similarity=0.837 Sum_probs=214.4
Q ss_pred EEEEEEEEECCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHHhCCCCCCcEEEECCeeCCCCCHHHHhhhceE
Q 001411 206 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGL 285 (1082)
Q Consensus 206 i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 285 (1082)
++++|++++|++...++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.++|
T Consensus 1 i~~~~l~~~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (237)
T cd03252 1 ITFEHVRFRYKPDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRRQVGV 80 (237)
T ss_pred CEEEEEEEecCCCCccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehHhcCHHHHhhcEEE
Confidence 47899999997533459999999999999999999999999999999999999999999999999887777788889999
Q ss_pred EccCCCcChhcHHHHHhcCCCCCCHHHHHHHHHHhchHHHHhcCCCCccccccCCCCCCChHHHHHHHHHHhcccCCCee
Q 001411 286 VSQEPALFATSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKIL 365 (1082)
Q Consensus 286 v~Q~~~l~~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~lp~g~~t~~g~~g~~LSgGqkqri~lARal~~~~~il 365 (1082)
++|++++|+.|++||+.++.+....+++.++++..++.+.++.+|.|+++..+..+.+||||||||++||||++.+|+++
T Consensus 81 ~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~ll 160 (237)
T cd03252 81 VLQENVLFNRSIRDNIALADPGMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPRIL 160 (237)
T ss_pred EcCCchhccchHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHHHHHHHHHhhCCCEE
Confidence 99999999999999999876544456677777878888999999999999999999999999999999999999999999
Q ss_pred EEeCcccCCCHHHHHHHHHHHHHHcCCCeEEEEccCccccccCCEEEEEeCCEEEEecCchhhhhcCchhHHHH
Q 001411 366 LLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRDVDTIMVLKNGQVVESGTHVDLISKGGEYAALV 439 (1082)
Q Consensus 366 llDEpts~LD~~~~~~i~~~l~~~~~~~t~i~vtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~ 439 (1082)
||||||++||+.+...+.+.|.++.+++|+|++||+++.+..||++++|++|++++.|+++++.++.+.|..++
T Consensus 161 llDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~~~~~~~~ 234 (237)
T cd03252 161 IFDEATSALDYESEHAIMRNMHDICAGRTVIIIAHRLSTVKNADRIIVMEKGRIVEQGSHDELLAENGLYAYLY 234 (237)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHhCCEEEEEECCEEEEEcCHHHHHhccChHHHHH
Confidence 99999999999999999999999877899999999999998899999999999999999999988877777654
|
coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. |
| >cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-45 Score=399.86 Aligned_cols=235 Identities=55% Similarity=0.884 Sum_probs=217.9
Q ss_pred EEEEeEEEECCCCCCcccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCccCCCCCHHHHhcceE
Q 001411 835 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRKIG 914 (1082)
Q Consensus 835 I~~~~Vs~~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR~~i~ 914 (1082)
|+++|++++|+. +.++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+...+|+.++
T Consensus 1 l~~~~l~~~~~~--~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~~~~~~~~~~~~~~i~ 78 (236)
T cd03253 1 IEFENVTFAYDP--GRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLRRAIG 78 (236)
T ss_pred CEEEEEEEEeCC--CCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEhhhCCHHHHHhhEE
Confidence 478999999962 246999999999999999999999999999999999999999999999999999888888999999
Q ss_pred EEcccCccccccHHHHhccCCCCCCHHHHHHHHHHhcHHHHHhhCcccccccccCCCCCCChhHHHHHHHHHHHccCCCE
Q 001411 915 LVQQEPALFSTTIYENIKYGNEDASEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSI 994 (1082)
Q Consensus 915 ~VpQdp~Lf~gTIreNl~~~~~~~~d~ei~~al~~a~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlaLARAlL~~~~I 994 (1082)
|+||+|.+|++|+++|+.++....+++++.++++.+++.+.+..+|.|+++.+.....+||||||||++|||||+++|++
T Consensus 79 ~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~la~aL~~~p~l 158 (236)
T cd03253 79 VVPQDTVLFNDTIGYNIRYGRPDATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPPI 158 (236)
T ss_pred EECCCChhhcchHHHHHhhcCCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCCE
Confidence 99999999999999999886655667778888899999999999999999999999999999999999999999999999
Q ss_pred EEeeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhccCEEEEEeCCEEEEecChHHHhhhccchHHHHHHH
Q 001411 995 LLLDEATSALDTASENLIQEALDKLMEGRTTIMVAHRLSTIRNADKIAVLQQGKVAEIGSHEQLLRKENGIYKQLIRL 1072 (1082)
Q Consensus 995 LlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~~DrI~Vl~~G~ive~G~~~eLl~~~~g~f~~l~~~ 1072 (1082)
|||||||++||+++.+.+.+.|++..++.|+|++||+++.+..||++++|++|++++.|+++++.+ +.+.|+.++..
T Consensus 159 lllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~d~~~~l~~g~i~~~~~~~~~~~-~~~~~~~~~~~ 235 (236)
T cd03253 159 LLLDEATSALDTHTEREIQAALRDVSKGRTTIVIAHRLSTIVNADKIIVLKDGRIVERGTHEELLA-KGGLYAEMWKA 235 (236)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHhCCEEEEEECCEEEeeCCHHHHhh-cccHHHHHHhc
Confidence 999999999999999999999998766889999999999998899999999999999999999987 56778777653
|
Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-46 Score=392.15 Aligned_cols=214 Identities=34% Similarity=0.575 Sum_probs=191.3
Q ss_pred cEEEEEEEEECCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHHhCCCCCCcEEEECCeeCCCCCHHHHhhhce
Q 001411 205 QIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMG 284 (1082)
Q Consensus 205 ~i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 284 (1082)
.++++|++|+|++ +++|+|+||++++||+++|+||||||||||+|+|+|+++|.+|+|.+||+++.+++.+++.+.+|
T Consensus 2 ~L~~~~ls~~y~~--~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~ia 79 (258)
T COG1120 2 MLEVENLSFGYGG--KPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKLA 79 (258)
T ss_pred eeEEEEEEEEECC--eeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhEE
Confidence 3789999999984 45999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEccCCCc-ChhcHHHHHhcCCCCC----------CHHHHHHHHHHhchHHHHhcCCCCccccccCCCCCCChHHHHHHH
Q 001411 285 LVSQEPAL-FATSIANNILLGKEDA----------SMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIA 353 (1082)
Q Consensus 285 ~v~Q~~~l-~~~ti~~ni~~g~~~~----------~~~~~~~~~~~~~~~~~i~~lp~g~~t~~g~~g~~LSgGqkqri~ 353 (1082)
||||++.. |+-||+|-+.+|+-.. +.+.+.++++..++.++.++ .-..||||||||+.
T Consensus 80 ~vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r-----------~~~~LSGGerQrv~ 148 (258)
T COG1120 80 YVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADR-----------PVDELSGGERQRVL 148 (258)
T ss_pred EeccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcC-----------cccccChhHHHHHH
Confidence 99999754 5669999999996421 23357777888877766544 23579999999999
Q ss_pred HHHhcccCCCeeEEeCcccCCCHHHHHHHHHHHHHHc--CCCeEEEEccCcccc-ccCCEEEEEeCCEEEEecCchhhhh
Q 001411 354 IARAVLRNPKILLLDEATSALDAESELIVQRALEKIM--SNRTTIVVAHRLSTV-RDVDTIMVLKNGQVVESGTHVDLIS 430 (1082)
Q Consensus 354 lARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~--~~~t~i~vtH~~~~~-~~~d~i~~l~~G~i~~~g~~~~l~~ 430 (1082)
|||||+++|+|++||||||+||...+..+++.++++. +++|+|+|+|+++.. ++||++++|++|+++.+|+++|++.
T Consensus 149 iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~A~ryad~~i~lk~G~i~a~G~p~evlT 228 (258)
T COG1120 149 IARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNLAARYADHLILLKDGKIVAQGTPEEVLT 228 (258)
T ss_pred HHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEeecCcchhcC
Confidence 9999999999999999999999999999999999986 369999999999875 6799999999999999999999886
Q ss_pred c
Q 001411 431 K 431 (1082)
Q Consensus 431 ~ 431 (1082)
.
T Consensus 229 ~ 229 (258)
T COG1120 229 E 229 (258)
T ss_pred H
Confidence 5
|
|
| >cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-45 Score=398.70 Aligned_cols=236 Identities=62% Similarity=1.015 Sum_probs=214.8
Q ss_pred EEEEeEEEECCCCCCcccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCccCCCCCHHHHhcceE
Q 001411 835 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRKIG 914 (1082)
Q Consensus 835 I~~~~Vs~~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR~~i~ 914 (1082)
|+++|++++|+...+.++|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.++...+...+|++++
T Consensus 1 l~i~~l~~~~~~~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 80 (238)
T cd03249 1 IEFKNVSFRYPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRSQIG 80 (238)
T ss_pred CeEEEEEEecCCCCCccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCEehhhcCHHHHHhhEE
Confidence 47899999997432357999999999999999999999999999999999999999999999999998888888888999
Q ss_pred EEcccCccccccHHHHhccCCCCCCHHHHHHHHHHhcHHHHHhhCcccccccccCCCCCCChhHHHHHHHHHHHccCCCE
Q 001411 915 LVQQEPALFSTTIYENIKYGNEDASEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSI 994 (1082)
Q Consensus 915 ~VpQdp~Lf~gTIreNl~~~~~~~~d~ei~~al~~a~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlaLARAlL~~~~I 994 (1082)
|+||+|.+|+.|+++|+.++......+++.+.++..++.+++..+|.|+++.......+||||||||++|||||+.+|++
T Consensus 81 ~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la~al~~~p~l 160 (238)
T cd03249 81 LVSQEPVLFDGTIAENIRYGKPDATDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNPKI 160 (238)
T ss_pred EECCchhhhhhhHHHHhhccCCCCCHHHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHHHHHHHHHhcCCCE
Confidence 99999999999999999886555556677778888899999999999999999988899999999999999999999999
Q ss_pred EEeeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhccCEEEEEeCCEEEEecChHHHhhhccchHHHHHH
Q 001411 995 LLLDEATSALDTASENLIQEALDKLMEGRTTIMVAHRLSTIRNADKIAVLQQGKVAEIGSHEQLLRKENGIYKQLIR 1071 (1082)
Q Consensus 995 LlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~~DrI~Vl~~G~ive~G~~~eLl~~~~g~f~~l~~ 1071 (1082)
|||||||++||+.+.+.+.+.|++..+++|+|++||+++.+..||+|++|++|++++.|+++++.+ ..+.++.++.
T Consensus 161 lllDEP~~gLD~~~~~~l~~~l~~~~~g~~vi~~sh~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~-~~~~~~~~~~ 236 (238)
T cd03249 161 LLLDEATSALDAESEKLVQEALDRAMKGRTTIVIAHRLSTIRNADLIAVLQNGQVVEQGTHDELMA-QKGVYAKLVK 236 (238)
T ss_pred EEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCEEEEeCCHHHHhh-cChhHHHHhh
Confidence 999999999999999999999998767899999999999998899999999999999999999987 4565665553
|
In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. |
| >cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-45 Score=398.33 Aligned_cols=233 Identities=56% Similarity=0.923 Sum_probs=213.8
Q ss_pred EEEEeEEEECCCCCCcccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCccCCCCCHHHHhcceE
Q 001411 835 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRKIG 914 (1082)
Q Consensus 835 I~~~~Vs~~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR~~i~ 914 (1082)
|+++|++++|+.+ ..++|+|+||++++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+...+|++++
T Consensus 1 i~~~~l~~~~~~~-~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (234)
T cd03251 1 VEFKNVTFRYPGD-GPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRRQIG 79 (234)
T ss_pred CEEEEEEEEeCCC-CccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEhhhCCHHHHHhhEE
Confidence 5789999999632 236999999999999999999999999999999999999999999999999998888888899999
Q ss_pred EEcccCccccccHHHHhccCCCCCCHHHHHHHHHHhcHHHHHhhCcccccccccCCCCCCChhHHHHHHHHHHHccCCCE
Q 001411 915 LVQQEPALFSTTIYENIKYGNEDASEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSI 994 (1082)
Q Consensus 915 ~VpQdp~Lf~gTIreNl~~~~~~~~d~ei~~al~~a~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlaLARAlL~~~~I 994 (1082)
|+||+|.+|+.|++||+.++....+..++.+.++..++.++++.+|.|+++..+....+||||||||++|||||+++|++
T Consensus 80 ~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~l 159 (234)
T cd03251 80 LVSQDVFLFNDTVAENIAYGRPGATREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPI 159 (234)
T ss_pred EeCCCCeeccccHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHHHHHHHHHhcCCCE
Confidence 99999999999999999986555566677778888899999999999999999988999999999999999999999999
Q ss_pred EEeeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhccCEEEEEeCCEEEEecChHHHhhhccchHHHH
Q 001411 995 LLLDEATSALDTASENLIQEALDKLMEGRTTIMVAHRLSTIRNADKIAVLQQGKVAEIGSHEQLLRKENGIYKQL 1069 (1082)
Q Consensus 995 LlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~~DrI~Vl~~G~ive~G~~~eLl~~~~g~f~~l 1069 (1082)
|||||||++||+.+.+.+.+.|++..++.|+|++||+++.+..||+|++|++|++++.|+++++.. ..+.|+.+
T Consensus 160 llLDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~-~~~~~~~~ 233 (234)
T cd03251 160 LILDEATSALDTESERLVQAALERLMKNRTTFVIAHRLSTIENADRIVVLEDGKIVERGTHEELLA-QGGVYAKL 233 (234)
T ss_pred EEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhhCCEEEEecCCeEeeeCCHHHHHH-cCcchhhh
Confidence 999999999999999999999999877899999999999998899999999999999999999987 45655543
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-45 Score=394.33 Aligned_cols=221 Identities=37% Similarity=0.641 Sum_probs=206.9
Q ss_pred ccEEEEeEEEECCCCCCcccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCccCCCCCHHHHhcc
Q 001411 833 GNIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRK 912 (1082)
Q Consensus 833 g~I~~~~Vs~~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR~~ 912 (1082)
|.|+++|++++|+.. +.++|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.++...+...+|++
T Consensus 1 ~~l~~~~l~~~~~~~-~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 79 (221)
T cd03244 1 GDIEFKNVSLRYRPN-LPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDLRSR 79 (221)
T ss_pred CcEEEEEEEEecCCC-CcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhHhCCHHHHhhh
Confidence 468999999999732 3479999999999999999999999999999999999999999999999999998888899999
Q ss_pred eEEEcccCccccccHHHHhccCCCCCCHHHHHHHHHHhcHHHHHhhCcccccccccCCCCCCChhHHHHHHHHHHHccCC
Q 001411 913 IGLVQQEPALFSTTIYENIKYGNEDASEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNP 992 (1082)
Q Consensus 913 i~~VpQdp~Lf~gTIreNl~~~~~~~~d~ei~~al~~a~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlaLARAlL~~~ 992 (1082)
++|+||+|.+|++|+++|+.+.. ..+.+++.++++..++.+++.++|.|+++.+++.+.+||+|||||++|||||+++|
T Consensus 80 i~~~~q~~~l~~~tv~enl~~~~-~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p 158 (221)
T cd03244 80 ISIIPQDPVLFSGTIRSNLDPFG-EYSDEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKS 158 (221)
T ss_pred EEEECCCCccccchHHHHhCcCC-CCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHHHHHhcCC
Confidence 99999999999999999998753 35677889999999999999999999999999999999999999999999999999
Q ss_pred CEEEeeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhccCEEEEEeCCEEEEecCh
Q 001411 993 SILLLDEATSALDTASENLIQEALDKLMEGRTTIMVAHRLSTIRNADKIAVLQQGKVAEIGSH 1055 (1082)
Q Consensus 993 ~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~~DrI~Vl~~G~ive~G~~ 1055 (1082)
++|||||||++||+.+.+.+.+.|++..++.|+|++||+++.+..||++++|++|++++.|++
T Consensus 159 ~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~~~~~~~~ 221 (221)
T cd03244 159 KILVLDEATASVDPETDALIQKTIREAFKDCTVLTIAHRLDTIIDSDRILVLDKGRVVEFDSP 221 (221)
T ss_pred CEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCeEEecCCC
Confidence 999999999999999999999999988778899999999999988999999999999998863
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-46 Score=374.20 Aligned_cols=219 Identities=30% Similarity=0.550 Sum_probs=190.8
Q ss_pred CcEEEEEEEEECCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHHhCCCCCCcEEEECCeeCCCCCHH---HHh
Q 001411 204 GQIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLK---WLR 280 (1082)
Q Consensus 204 ~~i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~---~~~ 280 (1082)
..|++++|+++|+++ .+++|+||+|++||+++|+||||||||||+++|.|+++|++|+|.++|+++.+++.+ .+|
T Consensus 7 ~~I~vr~v~~~fG~~--~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~~~~ir 84 (263)
T COG1127 7 PLIEVRGVTKSFGDR--VILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYEIR 84 (263)
T ss_pred ceEEEeeeeeecCCE--EEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHHHHHHH
Confidence 469999999999754 499999999999999999999999999999999999999999999999999888754 568
Q ss_pred hhceEEccCCCcChh-cHHHHHhcCCCCC---CHHH----HHHHHHHhchHHH-HhcCCCCccccccCCCCCCChHHHHH
Q 001411 281 EQMGLVSQEPALFAT-SIANNILLGKEDA---SMDR----VIEAAKAANAHSF-VEGLPDGYQTQVGEGGTQLSGGQKQR 351 (1082)
Q Consensus 281 ~~i~~v~Q~~~l~~~-ti~~ni~~g~~~~---~~~~----~~~~~~~~~~~~~-i~~lp~g~~t~~g~~g~~LSgGqkqr 351 (1082)
+++|+++|+..||+. ||+||+.|...+. +.+. +...++++++... .+.+| .+||||.+.|
T Consensus 85 ~r~GvlFQ~gALFssltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~P-----------sELSGGM~KR 153 (263)
T COG1127 85 KRMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLYP-----------SELSGGMRKR 153 (263)
T ss_pred hheeEEeeccccccccchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhCc-----------hhhcchHHHH
Confidence 899999999999988 9999999864322 2222 3334455555554 44555 5899999999
Q ss_pred HHHHHhcccCCCeeEEeCcccCCCHHHHHHHHHHHHHHcC--CCeEEEEccCcccccc-CCEEEEEeCCEEEEecCchhh
Q 001411 352 IAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMS--NRTTIVVAHRLSTVRD-VDTIMVLKNGQVVESGTHVDL 428 (1082)
Q Consensus 352 i~lARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l 428 (1082)
+|||||+..||+|+++|||||+|||.+...+.+.|+++++ +.|+|+|||+++.+.. ||||+++.+|+|+..|+++|+
T Consensus 154 vaLARAialdPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl~s~~~i~Drv~~L~~gkv~~~Gt~~el 233 (263)
T COG1127 154 VALARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDLDSLLTIADRVAVLADGKVIAEGTPEEL 233 (263)
T ss_pred HHHHHHHhcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECChHHHHhhhceEEEEeCCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999988864 6899999999998876 799999999999999999999
Q ss_pred hhcCchh
Q 001411 429 ISKGGEY 435 (1082)
Q Consensus 429 ~~~~~~~ 435 (1082)
.+....|
T Consensus 234 ~~sd~P~ 240 (263)
T COG1127 234 LASDDPW 240 (263)
T ss_pred HhCCCHH
Confidence 9876544
|
|
| >cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-45 Score=395.36 Aligned_cols=227 Identities=52% Similarity=0.892 Sum_probs=211.5
Q ss_pred ccEEEEeEEEECCCCCCcccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCccCCCCCHHHHhcc
Q 001411 833 GNIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRK 912 (1082)
Q Consensus 833 g~I~~~~Vs~~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR~~ 912 (1082)
|.|+++|++++|+. ..++++|+||+|++||+++|+|+||||||||+++|.|+++|.+|+|.+||.++...+...+|++
T Consensus 1 ~~l~~~~l~~~~~~--~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 78 (229)
T cd03254 1 GEIEFENVNFSYDE--KKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLRSM 78 (229)
T ss_pred CeEEEEEEEEecCC--CCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeHHHcCHHHHhhh
Confidence 46899999999962 2469999999999999999999999999999999999999999999999999988888889999
Q ss_pred eEEEcccCccccccHHHHhccCCCCCCHHHHHHHHHHhcHHHHHhhCcccccccccCCCCCCChhHHHHHHHHHHHccCC
Q 001411 913 IGLVQQEPALFSTTIYENIKYGNEDASEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNP 992 (1082)
Q Consensus 913 i~~VpQdp~Lf~gTIreNl~~~~~~~~d~ei~~al~~a~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlaLARAlL~~~ 992 (1082)
++|+||++.+|++|+++|+.++.+...++++.++++..++.++++.+|.|+++.++....+||||||||++|||||+++|
T Consensus 79 i~~~~q~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~al~~~p 158 (229)
T cd03254 79 IGVVLQDTFLFSGTIMENIRLGRPNATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDP 158 (229)
T ss_pred EEEecCCchhhhhHHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999865555667788888999999999999999999999889999999999999999999999
Q ss_pred CEEEeeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhccCEEEEEeCCEEEEecChHHHhhh
Q 001411 993 SILLLDEATSALDTASENLIQEALDKLMEGRTTIMVAHRLSTIRNADKIAVLQQGKVAEIGSHEQLLRK 1061 (1082)
Q Consensus 993 ~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~~DrI~Vl~~G~ive~G~~~eLl~~ 1061 (1082)
++|||||||++||+.+.+.+.+.|++..+++|+|+|||+++.+..||+|++|++|++++.|+++++.++
T Consensus 159 ~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~~~~~~~~~~~~~~ 227 (229)
T cd03254 159 KILILDEATSNIDTETEKLIQEALEKLMKGRTSIIIAHRLSTIKNADKILVLDDGKIIEEGTHDELLAK 227 (229)
T ss_pred CEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhhCCEEEEEeCCeEEEeCCHHHHHhh
Confidence 999999999999999999999999988678999999999999988999999999999999999888763
|
In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-45 Score=403.89 Aligned_cols=213 Identities=36% Similarity=0.579 Sum_probs=194.0
Q ss_pred cEEEEEEEEECCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHHhCCCCCCcEEEECCeeCCCCCHHHHhhhce
Q 001411 205 QIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMG 284 (1082)
Q Consensus 205 ~i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 284 (1082)
.|+++|+++.|++.. +++|+||+|++||+++|+|||||||||||++|+|+.+|++|+|.++|+++++++++. +.||
T Consensus 3 ~i~l~~v~K~yg~~~--~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~~--R~ia 78 (338)
T COG3839 3 ELELKNVRKSFGSFE--VLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEK--RGIA 78 (338)
T ss_pred EEEEeeeEEEcCCce--eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhH--CCEE
Confidence 589999999997543 899999999999999999999999999999999999999999999999999998876 6799
Q ss_pred EEccCCCcChh-cHHHHHhcCCCCC------CHHHHHHHHHHhchHHHHhcCCCCccccccCCCCCCChHHHHHHHHHHh
Q 001411 285 LVSQEPALFAT-SIANNILLGKEDA------SMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARA 357 (1082)
Q Consensus 285 ~v~Q~~~l~~~-ti~~ni~~g~~~~------~~~~~~~~~~~~~~~~~i~~lp~g~~t~~g~~g~~LSgGqkqri~lARa 357 (1082)
+|+|++.||+. ||+|||.||.... -++++.++++..++.+.+++.|. +||||||||||||||
T Consensus 79 mVFQ~yALyPhmtV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~~lL~r~P~-----------~LSGGQrQRVAlaRA 147 (338)
T COG3839 79 MVFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNRKPL-----------QLSGGQRQRVALARA 147 (338)
T ss_pred EEeCCccccCCCcHHHHhhhhhhhCCCchHHHHHHHHHHHHHcCChhHHhcCcc-----------cCChhhHHHHHHHHH
Confidence 99999999988 9999999986543 25678888988888888887774 899999999999999
Q ss_pred cccCCCeeEEeCcccCCCHHHHHHHHHHHHHHcC--CCeEEEEccCccccc-cCCEEEEEeCCEEEEecCchhhhhcC
Q 001411 358 VLRNPKILLLDEATSALDAESELIVQRALEKIMS--NRTTIVVAHRLSTVR-DVDTIMVLKNGQVVESGTHVDLISKG 432 (1082)
Q Consensus 358 l~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~vtH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~~~ 432 (1082)
|.++|+++|||||+|+||++.+..+...|+++.+ +.|+|+||||..++. .+|||.+|++|+|.+.|++.|+..+.
T Consensus 148 lVr~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq~EAmtladri~Vm~~G~i~Q~g~p~ely~~P 225 (338)
T COG3839 148 LVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQVEAMTLADRIVVMNDGRIQQVGTPLELYERP 225 (338)
T ss_pred HhcCCCEEEecCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCHHHHHhhCCEEEEEeCCeeeecCChHHHhhCc
Confidence 9999999999999999999999999988888754 579999999988765 58999999999999999999998763
|
|
| >COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-45 Score=354.54 Aligned_cols=210 Identities=33% Similarity=0.558 Sum_probs=188.8
Q ss_pred EEEEEEEEECCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHHhCCCCCCcEEEECCeeCCCCCHHHHhhhceE
Q 001411 206 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGL 285 (1082)
Q Consensus 206 i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 285 (1082)
+.+++|.|.|...+ -..+++|++||++||+||||||||||+++++|+..|.+|+|.++|+|....++.+ +-+++
T Consensus 2 l~L~~V~~~y~~~~----~~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~P~~--RPVSm 75 (231)
T COG3840 2 LALDDVRFSYGHLP----MRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPAE--RPVSM 75 (231)
T ss_pred ccccceEEeeCcce----EEEEEeecCCcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcCCccc--CChhh
Confidence 56789999997433 3578999999999999999999999999999999999999999999998777654 56999
Q ss_pred EccCCCcChh-cHHHHHhcCCCCC------CHHHHHHHHHHhchHHHHhcCCCCccccccCCCCCCChHHHHHHHHHHhc
Q 001411 286 VSQEPALFAT-SIANNILLGKEDA------SMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAV 358 (1082)
Q Consensus 286 v~Q~~~l~~~-ti~~ni~~g~~~~------~~~~~~~~~~~~~~~~~i~~lp~g~~t~~g~~g~~LSgGqkqri~lARal 358 (1082)
++||..||.. ||++||.+|.... ..+++..++..+++..+.+++|. +||||||||+||||+|
T Consensus 76 lFQEnNLFaHLtV~qNigLGl~P~LkL~a~~r~~v~~aa~~vGl~~~~~RLP~-----------~LSGGqRQRvALARcl 144 (231)
T COG3840 76 LFQENNLFAHLTVAQNIGLGLSPGLKLNAEQREKVEAAAAQVGLAGFLKRLPG-----------ELSGGQRQRVALARCL 144 (231)
T ss_pred hhhccccchhhhhhhhhcccCCcccccCHHHHHHHHHHHHHhChhhHhhhCcc-----------ccCchHHHHHHHHHHH
Confidence 9999999988 9999999996431 35678899999999999999996 8999999999999999
Q ss_pred ccCCCeeEEeCcccCCCHHHHHHHHHHHHHHc--CCCeEEEEccCcccccc-CCEEEEEeCCEEEEecCchhhhhcC
Q 001411 359 LRNPKILLLDEATSALDAESELIVQRALEKIM--SNRTTIVVAHRLSTVRD-VDTIMVLKNGQVVESGTHVDLISKG 432 (1082)
Q Consensus 359 ~~~~~illlDEpts~LD~~~~~~i~~~l~~~~--~~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~ 432 (1082)
.++.+|++||||+|+|||.-++.+...+.++. ++.|++||||+++.+.. +|+++++++|+|.++|+.+++....
T Consensus 145 vR~~PilLLDEPFsALdP~LR~eMl~Lv~~l~~E~~~TllmVTH~~~Da~~ia~~~~fl~~Gri~~~g~~~~~~~~~ 221 (231)
T COG3840 145 VREQPILLLDEPFSALDPALRAEMLALVSQLCDERKMTLLMVTHHPEDAARIADRVVFLDNGRIAAQGSTQELLSGK 221 (231)
T ss_pred hccCCeEEecCchhhcCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhhhceEEEeCCEEEeeccHHHHhccC
Confidence 99999999999999999999999999998875 36799999999998865 8999999999999999999887654
|
|
| >COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-46 Score=360.02 Aligned_cols=207 Identities=34% Similarity=0.583 Sum_probs=187.5
Q ss_pred EEEEEEEEECCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHHhCCCCCCcEEEECCeeCCCCC---HHHHhhh
Q 001411 206 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQ---LKWLREQ 282 (1082)
Q Consensus 206 i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~---~~~~~~~ 282 (1082)
|+|+||+++|++. .++|+|+||+|++||++-|+||||||||||+|+|.+...|+.|+|.++|+|+..+. ..-+|++
T Consensus 2 I~f~~V~k~Y~~g-~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~LRR~ 80 (223)
T COG2884 2 IRFENVSKAYPGG-REALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFLRRQ 80 (223)
T ss_pred eeehhhhhhcCCC-chhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccchhhhe
Confidence 7899999999876 56999999999999999999999999999999999999999999999999998764 5568999
Q ss_pred ceEEccCCCcChh-cHHHHHhcCCCC-----C-CHHHHHHHHHHhchHHHHhcCCCCccccccCCCCCCChHHHHHHHHH
Q 001411 283 MGLVSQEPALFAT-SIANNILLGKED-----A-SMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIA 355 (1082)
Q Consensus 283 i~~v~Q~~~l~~~-ti~~ni~~g~~~-----~-~~~~~~~~~~~~~~~~~i~~lp~g~~t~~g~~g~~LSgGqkqri~lA 355 (1082)
||+|+||..|... ||.||++|...- . -.+++.++++.+++.+....+|. .|||||+||++||
T Consensus 81 IGvVFQD~rLL~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~-----------~LSGGEQQRvaIA 149 (223)
T COG2884 81 IGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALPS-----------QLSGGEQQRVAIA 149 (223)
T ss_pred eeeEeeeccccccchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCcc-----------ccCchHHHHHHHH
Confidence 9999999998766 999999986432 1 24578889999999998888885 8999999999999
Q ss_pred HhcccCCCeeEEeCcccCCCHHHHHHHHHHHHHHc-CCCeEEEEccCccccccC-CEEEEEeCCEEEEecC
Q 001411 356 RAVLRNPKILLLDEATSALDAESELIVQRALEKIM-SNRTTIVVAHRLSTVRDV-DTIMVLKNGQVVESGT 424 (1082)
Q Consensus 356 Ral~~~~~illlDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~vtH~~~~~~~~-d~i~~l~~G~i~~~g~ 424 (1082)
||+..+|++||-||||.+|||+....|++.+.++. .|.||++.||+.+.+..+ -|++.+++|+++....
T Consensus 150 RAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~lv~~~~~rvl~l~~Grl~~d~~ 220 (223)
T COG2884 150 RAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLELVNRMRHRVLALEDGRLVRDES 220 (223)
T ss_pred HHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHHHHHhccCcEEEEeCCEEEeccc
Confidence 99999999999999999999999999999999885 489999999999999876 7899999999987543
|
|
| >COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-45 Score=373.87 Aligned_cols=227 Identities=33% Similarity=0.524 Sum_probs=190.6
Q ss_pred cEEEEeEEEECCCCCC-cccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCccCCCC-CHHHHhc
Q 001411 834 NIELRNVSFKYPVRPD-ITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTL-NLRSLRR 911 (1082)
Q Consensus 834 ~I~~~~Vs~~Y~~~~~-~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i-~~~~lR~ 911 (1082)
.++++|+++.|+.+.. .++|+||||+|.+||++||||+||||||||.++|.|+.+|++|+|.+||.+.... +.+..++
T Consensus 3 ~l~v~nl~~~y~~~~~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~~ 82 (252)
T COG1124 3 LLSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFYR 82 (252)
T ss_pred eEEEeceEEEecCCcchhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhhcc
Confidence 4899999999974321 1599999999999999999999999999999999999999999999999876654 3446788
Q ss_pred ceEEEcccCc--ccc-ccHHHHhc----cCCCCCCHHHHHHHHHHhcHHH-HHhhCcccccccccCCCCCCChhHHHHHH
Q 001411 912 KIGLVQQEPA--LFS-TTIYENIK----YGNEDASEIELMKATKAANAHG-FISRMPEGYQSHVGDRGVQLSGGQKQRVA 983 (1082)
Q Consensus 912 ~i~~VpQdp~--Lf~-gTIreNl~----~~~~~~~d~ei~~al~~a~l~~-~i~~lp~gldt~v~e~G~~LSgGQrQrla 983 (1082)
.+-+|+|||. |=+ -||++-|. ...-+....+++++++.+++.+ |..+.| ..||||||||+|
T Consensus 83 ~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~~~~~~~~~i~~~L~~VgL~~~~l~R~P-----------~eLSGGQ~QRia 151 (252)
T COG1124 83 PVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQQRIAELLDQVGLPPSFLDRRP-----------HELSGGQRQRIA 151 (252)
T ss_pred ceeEEecCCccccCcchhHHHHHhhhhccCCccHHHHHHHHHHHHcCCCHHHHhcCc-----------hhcChhHHHHHH
Confidence 9999999997 222 35555553 3111234556899999999865 444444 579999999999
Q ss_pred HHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHhcCC--ceEEEEecCchhhhc-cCEEEEEeCCEEEEecChHHHhh
Q 001411 984 IARAILKNPSILLLDEATSALDTASENLIQEALDKLMEG--RTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGSHEQLLR 1060 (1082)
Q Consensus 984 LARAlL~~~~ILlLDEaTS~LD~~te~~I~~~l~~~~~~--~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~G~~~eLl~ 1060 (1082)
|||||.-+|++||||||||+||....++|++.+.+..++ -|.|+|||++..+.. ||||+||++|+++|.++-.++..
T Consensus 152 IARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~~v~~~cdRi~Vm~~G~ivE~~~~~~l~~ 231 (252)
T COG1124 152 IARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLALVEHMCDRIAVMDNGQIVEIGPTEELLS 231 (252)
T ss_pred HHHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHHHHHHHhhheeeeeCCeEEEeechhhhhc
Confidence 999999999999999999999999999999999998764 499999999999987 99999999999999999999998
Q ss_pred hccchHHHHHH
Q 001411 1061 KENGIYKQLIR 1071 (1082)
Q Consensus 1061 ~~~g~f~~l~~ 1071 (1082)
.+...|.+.+-
T Consensus 232 ~~~h~ytr~Ll 242 (252)
T COG1124 232 HPSHPYTRELL 242 (252)
T ss_pred CCccHHHHHHH
Confidence 65666766554
|
|
| >COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-45 Score=379.23 Aligned_cols=195 Identities=37% Similarity=0.568 Sum_probs=172.3
Q ss_pred cEEEEEEEEECCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHHhCCCCCCcEEEECCeeCCCCCHHHHhhhce
Q 001411 205 QIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMG 284 (1082)
Q Consensus 205 ~i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 284 (1082)
.++++++++.|++ ..+|+|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++|.++..- ...++
T Consensus 3 ~l~i~~v~~~f~~--~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p-----~~~~~ 75 (248)
T COG1116 3 LLEIEGVSKSFGG--VEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGP-----GPDIG 75 (248)
T ss_pred eEEEEeeEEEeCc--eEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCC-----CCCEE
Confidence 4889999999986 4599999999999999999999999999999999999999999999999887432 35799
Q ss_pred EEccCCCcChh-cHHHHHhcCCCCC------CHHHHHHHHHHhchHHHHhcCCCCccccccCCCCCCChHHHHHHHHHHh
Q 001411 285 LVSQEPALFAT-SIANNILLGKEDA------SMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARA 357 (1082)
Q Consensus 285 ~v~Q~~~l~~~-ti~~ni~~g~~~~------~~~~~~~~~~~~~~~~~i~~lp~g~~t~~g~~g~~LSgGqkqri~lARa 357 (1082)
||+|++.||+= ||+||+.+|.+.. ..+++.+.++.+++.++-+..|. +||||||||||||||
T Consensus 76 ~vFQ~~~LlPW~Tv~~NV~l~l~~~~~~~~e~~~~a~~~L~~VgL~~~~~~~P~-----------qLSGGMrQRVaiARA 144 (248)
T COG1116 76 YVFQEDALLPWLTVLDNVALGLELRGKSKAEARERAKELLELVGLAGFEDKYPH-----------QLSGGMRQRVAIARA 144 (248)
T ss_pred EEeccCcccchhhHHhhheehhhccccchHhHHHHHHHHHHHcCCcchhhcCcc-----------ccChHHHHHHHHHHH
Confidence 99999999997 9999999986542 23456677777777777777664 899999999999999
Q ss_pred cccCCCeeEEeCcccCCCHHHHHHHHHHHHHHcC--CCeEEEEccCccccc-cCCEEEEEeCC
Q 001411 358 VLRNPKILLLDEATSALDAESELIVQRALEKIMS--NRTTIVVAHRLSTVR-DVDTIMVLKNG 417 (1082)
Q Consensus 358 l~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~vtH~~~~~~-~~d~i~~l~~G 417 (1082)
|+.+|+||+||||++|||+.|+..+++.+.++.+ ++|+++|||+.++.- .+|||++|.++
T Consensus 145 L~~~P~lLLlDEPFgALDalTR~~lq~~l~~lw~~~~~TvllVTHdi~EAv~LsdRivvl~~~ 207 (248)
T COG1116 145 LATRPKLLLLDEPFGALDALTREELQDELLRLWEETRKTVLLVTHDVDEAVYLADRVVVLSNR 207 (248)
T ss_pred HhcCCCEEEEcCCcchhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHhhhCEEEEecCC
Confidence 9999999999999999999999999999988753 689999999999865 58999999983
|
|
| >KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-45 Score=401.79 Aligned_cols=194 Identities=27% Similarity=0.381 Sum_probs=162.2
Q ss_pred ccEEEEeEEEECCCCCCc-ccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCccCCCCCHHHHhc
Q 001411 833 GNIELRNVSFKYPVRPDI-TIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRR 911 (1082)
Q Consensus 833 g~I~~~~Vs~~Y~~~~~~-~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR~ 911 (1082)
..+++.+|+|.|+. +. +.++++++.++.-.++++||++|+||||+++++.+-.+|..|.+.+.+ |.
T Consensus 361 p~l~i~~V~f~y~p--~~y~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~~~rgi~~~~~-----------r~ 427 (582)
T KOG0062|consen 361 PNLRISYVAFEYTP--SEYQWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLTPTRGIVGRHP-----------RL 427 (582)
T ss_pred CeeEEEeeeccCCC--cchhhhhccCCccchhhhhheeccCchhHHHHHHHHhccCCcccceeeecc-----------cc
Confidence 46999999999973 43 789999999999999999999999999999999999999999998866 67
Q ss_pred ceEEEcccCccc-cccHH--HHhccCCCCCCHHHHHHHHHHhcHHHHHhhCcccccccccCCCCCCChhHHHHHHHHHHH
Q 001411 912 KIGLVQQEPALF-STTIY--ENIKYGNEDASEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAI 988 (1082)
Q Consensus 912 ~i~~VpQdp~Lf-~gTIr--eNl~~~~~~~~d~ei~~al~~a~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlaLARAl 988 (1082)
+|+|-.|.-+=| +-.+. +-+.-..|..+++|+++.|...|+..-+...+ -..||||||-|+++|-..
T Consensus 428 ri~~f~Qhhvd~l~~~v~~vd~~~~~~pG~~~ee~r~hl~~~Gl~g~la~~s----------i~~LSGGQKsrvafA~~~ 497 (582)
T KOG0062|consen 428 RIKYFAQHHVDFLDKNVNAVDFMEKSFPGKTEEEIRRHLGSFGLSGELALQS----------IASLSGGQKSRVAFAACT 497 (582)
T ss_pred eecchhHhhhhHHHHHhHHHHHHHHhCCCCCHHHHHHHHHhcCCCchhhhcc----------ccccCCcchhHHHHHHHh
Confidence 899999977643 22111 11111134558999999988887765443221 256999999999999999
Q ss_pred ccCCCEEEeeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhc-cCEEEEEeCCEEEE
Q 001411 989 LKNPSILLLDEATSALDTASENLIQEALDKLMEGRTTIMVAHRLSTIRN-ADKIAVLQQGKVAE 1051 (1082)
Q Consensus 989 L~~~~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive 1051 (1082)
..+|.+|||||||..||.++-..+-++|+.+-. -||+|||+.+.+.. |+.++|.++|+|.-
T Consensus 498 ~~~PhlLVLDEPTNhLD~dsl~AL~~Al~~F~G--GVv~VSHd~~fi~~~c~E~Wvve~g~vt~ 559 (582)
T KOG0062|consen 498 WNNPHLLVLDEPTNHLDRDSLGALAKALKNFNG--GVVLVSHDEEFISSLCKELWVVEDGKVTP 559 (582)
T ss_pred cCCCcEEEecCCCccccHHHHHHHHHHHHhcCC--cEEEEECcHHHHhhcCceeEEEcCCcEEe
Confidence 999999999999999999999999999987633 69999999999976 99999999999986
|
|
| >TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-45 Score=412.03 Aligned_cols=226 Identities=35% Similarity=0.537 Sum_probs=192.4
Q ss_pred EEEEeEEEECCCCC-CcccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCccCCCCCHHH---Hh
Q 001411 835 IELRNVSFKYPVRP-DITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRS---LR 910 (1082)
Q Consensus 835 I~~~~Vs~~Y~~~~-~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~---lR 910 (1082)
|+++||+++|+... ..++|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.++..++.++ +|
T Consensus 2 I~~~~lsk~y~~~~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~l~~~r 81 (343)
T TIGR02314 2 IKLSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKAR 81 (343)
T ss_pred EEEEEEEEEECCCCcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHh
Confidence 78999999996321 247999999999999999999999999999999999999999999999999999887654 58
Q ss_pred cceEEEcccCcccc-ccHHHHhccCCC--CCCH----HHHHHHHHHhcHHHHHhhCcccccccccCCCCCCChhHHHHHH
Q 001411 911 RKIGLVQQEPALFS-TTIYENIKYGNE--DASE----IELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVA 983 (1082)
Q Consensus 911 ~~i~~VpQdp~Lf~-gTIreNl~~~~~--~~~d----~ei~~al~~a~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrla 983 (1082)
++|+||||++.+|+ .|+++|+.++.. ..+. +.+.++++.+++.++..+ ....||||||||++
T Consensus 82 ~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~~~~~~-----------~~~~LSgGqkQRV~ 150 (343)
T TIGR02314 82 RQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLGDKHDS-----------YPSNLSGGQKQRVA 150 (343)
T ss_pred cCEEEEECCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhC-----------ChhhCCHHHHHHHH
Confidence 89999999999995 799999986421 1222 335566777776655433 33679999999999
Q ss_pred HHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHhcC--CceEEEEecCchhhhc-cCEEEEEeCCEEEEecChHHHhh
Q 001411 984 IARAILKNPSILLLDEATSALDTASENLIQEALDKLME--GRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGSHEQLLR 1060 (1082)
Q Consensus 984 LARAlL~~~~ILlLDEaTS~LD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~G~~~eLl~ 1060 (1082)
|||||+.+|+|||||||||+||+.+.+.+.+.|++..+ +.|+|+|||+++.+.. ||+|++|++|+|+|.|++++++.
T Consensus 151 IARAL~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~~v~~~~d~v~vl~~G~iv~~g~~~~v~~ 230 (343)
T TIGR02314 151 IARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQGTVSEIFS 230 (343)
T ss_pred HHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHc
Confidence 99999999999999999999999999999999998753 7899999999999966 99999999999999999999986
Q ss_pred hccchH-HHHHH
Q 001411 1061 KENGIY-KQLIR 1071 (1082)
Q Consensus 1061 ~~~g~f-~~l~~ 1071 (1082)
.+...+ +.++.
T Consensus 231 ~p~~~~~~~~~~ 242 (343)
T TIGR02314 231 HPKTPLAQKFIR 242 (343)
T ss_pred CCCcHHHHHHHh
Confidence 554433 44443
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. |
| >COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-45 Score=386.63 Aligned_cols=213 Identities=37% Similarity=0.577 Sum_probs=192.2
Q ss_pred cEEEEeEEEECCCCCCcccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCccCCCCCHHHHhcce
Q 001411 834 NIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRKI 913 (1082)
Q Consensus 834 ~I~~~~Vs~~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR~~i 913 (1082)
.++++|++|+|+ ++++|+|+||+|++||.++|+||||||||||+++|.|+.+|.+|+|++||.++.+++.+++.+++
T Consensus 2 ~L~~~~ls~~y~---~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~i 78 (258)
T COG1120 2 MLEVENLSFGYG---GKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKL 78 (258)
T ss_pred eeEEEEEEEEEC---CeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhE
Confidence 378999999996 56799999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEcccCc-cccccHHHHhccCCCC-------CC--H-HHHHHHHHHhcHHHHHhhCcccccccccCCCCCCChhHHHHH
Q 001411 914 GLVQQEPA-LFSTTIYENIKYGNED-------AS--E-IELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRV 982 (1082)
Q Consensus 914 ~~VpQdp~-Lf~gTIreNl~~~~~~-------~~--d-~ei~~al~~a~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrl 982 (1082)
+||||++. -|.-||+|=+.+|.-. .+ | +.+.+|++..++.++..+ .+ ..||||||||+
T Consensus 79 a~vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r-------~~----~~LSGGerQrv 147 (258)
T COG1120 79 AYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADR-------PV----DELSGGERQRV 147 (258)
T ss_pred EEeccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcC-------cc----cccChhHHHHH
Confidence 99999964 5667999998877421 12 3 347788999999988654 23 45999999999
Q ss_pred HHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHhc--CCceEEEEecCchhh-hccCEEEEEeCCEEEEecChHHHh
Q 001411 983 AIARAILKNPSILLLDEATSALDTASENLIQEALDKLM--EGRTTIMVAHRLSTI-RNADKIAVLQQGKVAEIGSHEQLL 1059 (1082)
Q Consensus 983 aLARAlL~~~~ILlLDEaTS~LD~~te~~I~~~l~~~~--~~~TvI~IaHrl~ti-~~~DrI~Vl~~G~ive~G~~~eLl 1059 (1082)
.|||||.++|+||+||||||+||....-.|++.+++.. +++|+|+|.|+++.. +.||++++|++|+|+.+|+|+|.+
T Consensus 148 ~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~A~ryad~~i~lk~G~i~a~G~p~evl 227 (258)
T COG1120 148 LIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNLAARYADHLILLKDGKIVAQGTPEEVL 227 (258)
T ss_pred HHHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEeecCcchhc
Confidence 99999999999999999999999999999999999976 379999999999887 569999999999999999999998
Q ss_pred h
Q 001411 1060 R 1060 (1082)
Q Consensus 1060 ~ 1060 (1082)
.
T Consensus 228 T 228 (258)
T COG1120 228 T 228 (258)
T ss_pred C
Confidence 6
|
|
| >cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-45 Score=393.24 Aligned_cols=231 Identities=55% Similarity=0.907 Sum_probs=211.0
Q ss_pred EEEEEEEEECCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHHhCCCCCCcEEEECCeeCCCCCHHHHhhhceE
Q 001411 206 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGL 285 (1082)
Q Consensus 206 i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 285 (1082)
|+++|++++|++...++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.++|
T Consensus 1 i~~~~l~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (234)
T cd03251 1 VEFKNVTFRYPGDGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRRQIGL 80 (234)
T ss_pred CEEEEEEEEeCCCCccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEhhhCCHHHHHhhEEE
Confidence 47899999997543359999999999999999999999999999999999999999999999999887777778889999
Q ss_pred EccCCCcChhcHHHHHhcCCCCCCHHHHHHHHHHhchHHHHhcCCCCccccccCCCCCCChHHHHHHHHHHhcccCCCee
Q 001411 286 VSQEPALFATSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKIL 365 (1082)
Q Consensus 286 v~Q~~~l~~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~lp~g~~t~~g~~g~~LSgGqkqri~lARal~~~~~il 365 (1082)
++|++++|+.|++||+.++.+....+++.+.++..++.+.++.+|.|+++..+....+||||||||++|||||+.+|+++
T Consensus 81 ~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~ll 160 (234)
T cd03251 81 VSQDVFLFNDTVAENIAYGRPGATREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPIL 160 (234)
T ss_pred eCCCCeeccccHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHHHHHHHHHhcCCCEE
Confidence 99999999999999999876554556677777888888999999999999999999999999999999999999999999
Q ss_pred EEeCcccCCCHHHHHHHHHHHHHHcCCCeEEEEccCccccccCCEEEEEeCCEEEEecCchhhhhcCchhH
Q 001411 366 LLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRDVDTIMVLKNGQVVESGTHVDLISKGGEYA 436 (1082)
Q Consensus 366 llDEpts~LD~~~~~~i~~~l~~~~~~~t~i~vtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~ 436 (1082)
||||||++||+.+...+.+.|.++.+++|+|++||+++.+..||++++|++|++++.|+++++....+.|+
T Consensus 161 lLDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~~~~~ 231 (234)
T cd03251 161 ILDEATSALDTESERLVQAALERLMKNRTTFVIAHRLSTIENADRIVVLEDGKIVERGTHEELLAQGGVYA 231 (234)
T ss_pred EEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhhCCEEEEecCCeEeeeCCHHHHHHcCcchh
Confidence 99999999999999999999999877899999999999998899999999999999999988877655544
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-45 Score=375.50 Aligned_cols=205 Identities=35% Similarity=0.530 Sum_probs=171.6
Q ss_pred EEEEEEEEECCCCC--CccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHHhCCCCCCcEEEECCeeCCCCCHH---HH-
Q 001411 206 IEFSEVCFAYPSRP--HMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLK---WL- 279 (1082)
Q Consensus 206 i~~~~v~~~y~~~~--~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~---~~- 279 (1082)
++++|+++.|.... ..+|+++||+|++||+++|+|||||||||||++|.|+..|++|+|.++|.|+..++.+ .+
T Consensus 2 i~~~~v~k~y~~~~~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~R 81 (226)
T COG1136 2 IELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKLR 81 (226)
T ss_pred cEEeeeEEEeccCCcceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHHH
Confidence 57899999996432 3499999999999999999999999999999999999999999999999999988743 33
Q ss_pred hhhceEEccCCCcChh-cHHHHHhcCC----CCC--CHHHHHHHHHHhchHHHHhcCCCCccccccCCCCCCChHHHHHH
Q 001411 280 REQMGLVSQEPALFAT-SIANNILLGK----EDA--SMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRI 352 (1082)
Q Consensus 280 ~~~i~~v~Q~~~l~~~-ti~~ni~~g~----~~~--~~~~~~~~~~~~~~~~~i~~lp~g~~t~~g~~g~~LSgGqkqri 352 (1082)
|++||||+|+..|++. |++|||.+.. ... ..++..+.++..++.+... .....+|||||||||
T Consensus 82 ~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~----------~~~p~eLSGGqqQRV 151 (226)
T COG1136 82 RKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLL----------KKKPSELSGGQQQRV 151 (226)
T ss_pred HHhEEEECccCCCCCCCCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhc----------cCCchhcCHHHHHHH
Confidence 4579999999999887 9999998632 111 1223333444444433332 133468999999999
Q ss_pred HHHHhcccCCCeeEEeCcccCCCHHHHHHHHHHHHHHc--CCCeEEEEccCccccccCCEEEEEeCCEEE
Q 001411 353 AIARAVLRNPKILLLDEATSALDAESELIVQRALEKIM--SNRTTIVVAHRLSTVRDVDTIMVLKNGQVV 420 (1082)
Q Consensus 353 ~lARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~--~~~t~i~vtH~~~~~~~~d~i~~l~~G~i~ 420 (1082)
||||||+.+|+|++.||||++||.++.+.+++.+.++. .++|+|+|||++.....|||++.|+||++.
T Consensus 152 AIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA~~~dr~i~l~dG~~~ 221 (226)
T COG1136 152 AIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAKYADRVIELKDGKIE 221 (226)
T ss_pred HHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHhCCEEEEEeCCeee
Confidence 99999999999999999999999999999999999884 378999999999999999999999999954
|
|
| >COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-45 Score=399.83 Aligned_cols=219 Identities=35% Similarity=0.610 Sum_probs=198.2
Q ss_pred cEEEEeEEEECCCCCCcccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCccCCCCCHHHHhcce
Q 001411 834 NIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRKI 913 (1082)
Q Consensus 834 ~I~~~~Vs~~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR~~i 913 (1082)
.|+++||+++|++ . .+|+|+||+|+.||.++|+|||||||||++++|.|+.+|++|+|.|||.|++++++++ +.|
T Consensus 3 ~i~l~~v~K~yg~--~-~~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~~--R~i 77 (338)
T COG3839 3 ELELKNVRKSFGS--F-EVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEK--RGI 77 (338)
T ss_pred EEEEeeeEEEcCC--c-eeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhH--CCE
Confidence 5899999999962 1 2899999999999999999999999999999999999999999999999999999876 789
Q ss_pred EEEcccCccccc-cHHHHhccCCCC------CCHHHHHHHHHHhcHHHHHhhCcccccccccCCCCCCChhHHHHHHHHH
Q 001411 914 GLVQQEPALFST-TIYENIKYGNED------ASEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIAR 986 (1082)
Q Consensus 914 ~~VpQdp~Lf~g-TIreNl~~~~~~------~~d~ei~~al~~a~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlaLAR 986 (1082)
++|+|+..||+. ||++||.|+... ..++++.++++..++.+.+++.| .+||||||||+||||
T Consensus 78 amVFQ~yALyPhmtV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~~lL~r~P-----------~~LSGGQrQRVAlaR 146 (338)
T COG3839 78 AMVFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNRKP-----------LQLSGGQRQRVALAR 146 (338)
T ss_pred EEEeCCccccCCCcHHHHhhhhhhhCCCchHHHHHHHHHHHHHcCChhHHhcCc-----------ccCChhhHHHHHHHH
Confidence 999999999986 999999997432 22566888899999988888776 679999999999999
Q ss_pred HHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHhcC--CceEEEEecCchhhhc-cCEEEEEeCCEEEEecChHHHhhhcc
Q 001411 987 AILKNPSILLLDEATSALDTASENLIQEALDKLME--GRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGSHEQLLRKEN 1063 (1082)
Q Consensus 987 AlL~~~~ILlLDEaTS~LD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~G~~~eLl~~~~ 1063 (1082)
||+++|++++||||.|+||+.....+...|++..+ +.|+|.|||+...+.. +|||+||++|+|.+.|+|.|+.+++.
T Consensus 147 AlVr~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq~EAmtladri~Vm~~G~i~Q~g~p~ely~~P~ 226 (338)
T COG3839 147 ALVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQVEAMTLADRIVVMNDGRIQQVGTPLELYERPA 226 (338)
T ss_pred HHhcCCCEEEecCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCHHHHHhhCCEEEEEeCCeeeecCChHHHhhCcc
Confidence 99999999999999999999999999999998654 6899999999988865 99999999999999999999998777
Q ss_pred chHHH
Q 001411 1064 GIYKQ 1068 (1082)
Q Consensus 1064 g~f~~ 1068 (1082)
..|-.
T Consensus 227 n~fVA 231 (338)
T COG3839 227 NLFVA 231 (338)
T ss_pred chhhh
Confidence 66543
|
|
| >COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-45 Score=367.71 Aligned_cols=226 Identities=38% Similarity=0.600 Sum_probs=196.5
Q ss_pred cEEEEeEEEECCCCCCcccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCccCCCCCHH---HHh
Q 001411 834 NIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLR---SLR 910 (1082)
Q Consensus 834 ~I~~~~Vs~~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~---~lR 910 (1082)
.|++++|+++|. ++.|++||||+|++||.+||+|+||||||||++++.|+..|++|+|.|+|.|+.+++.+ .+|
T Consensus 8 ~I~vr~v~~~fG---~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~~~~ir 84 (263)
T COG1127 8 LIEVRGVTKSFG---DRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYEIR 84 (263)
T ss_pred eEEEeeeeeecC---CEEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHHHHHHH
Confidence 599999999996 45799999999999999999999999999999999999999999999999999999864 569
Q ss_pred cceEEEcccCccccc-cHHHHhccCCCC---CCHHHHHH----HHHHhcHHHH-HhhCcccccccccCCCCCCChhHHHH
Q 001411 911 RKIGLVQQEPALFST-TIYENIKYGNED---ASEIELMK----ATKAANAHGF-ISRMPEGYQSHVGDRGVQLSGGQKQR 981 (1082)
Q Consensus 911 ~~i~~VpQdp~Lf~g-TIreNl~~~~~~---~~d~ei~~----al~~a~l~~~-i~~lp~gldt~v~e~G~~LSgGQrQr 981 (1082)
+++|+++|+-.||+. ||+||+.+...+ .+++++.+ -++.+|+..- -+. -.+.||||.+.|
T Consensus 85 ~r~GvlFQ~gALFssltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~-----------~PsELSGGM~KR 153 (263)
T COG1127 85 KRMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADL-----------YPSELSGGMRKR 153 (263)
T ss_pred hheeEEeeccccccccchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhhh-----------CchhhcchHHHH
Confidence 999999999999975 999999985332 34444433 2444555443 222 246899999999
Q ss_pred HHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHhcC--CceEEEEecCchhhhc-cCEEEEEeCCEEEEecChHHH
Q 001411 982 VAIARAILKNPSILLLDEATSALDTASENLIQEALDKLME--GRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGSHEQL 1058 (1082)
Q Consensus 982 laLARAlL~~~~ILlLDEaTS~LD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~G~~~eL 1058 (1082)
+||||||.-+|+||++|||||+|||.+...+-+.|++..+ +.|+++|||+++++.. ||||+++.+|+|+..|+++|+
T Consensus 154 vaLARAialdPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl~s~~~i~Drv~~L~~gkv~~~Gt~~el 233 (263)
T COG1127 154 VALARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDLDSLLTIADRVAVLADGKVIAEGTPEEL 233 (263)
T ss_pred HHHHHHHhcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECChHHHHhhhceEEEEeCCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999998754 7899999999999976 899999999999999999999
Q ss_pred hhhccchHHHHHHHh
Q 001411 1059 LRKENGIYKQLIRLQ 1073 (1082)
Q Consensus 1059 l~~~~g~f~~l~~~~ 1073 (1082)
.+.++.+.++.++-.
T Consensus 234 ~~sd~P~v~qf~~G~ 248 (263)
T COG1127 234 LASDDPWVRQFFNGI 248 (263)
T ss_pred HhCCCHHHHHHhcCC
Confidence 997777888877543
|
|
| >cd03288 ABCC_SUR2 The SUR domain 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-44 Score=395.22 Aligned_cols=238 Identities=34% Similarity=0.591 Sum_probs=215.5
Q ss_pred CCCcEEEEEEEEECCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHHhCCCCCCcEEEECCeeCCCCCHHHHhh
Q 001411 202 LAGQIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLRE 281 (1082)
Q Consensus 202 ~~~~i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~ 281 (1082)
..+.|+++|++++|++....+|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|+++...+...+++
T Consensus 16 ~~~~i~~~~l~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~~ 95 (257)
T cd03288 16 LGGEIKIHDLCVRYENNLKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHTLRS 95 (257)
T ss_pred CCceEEEEEEEEEeCCCCCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCCCCCeEEECCEEhhhCCHHHHhh
Confidence 45679999999999754345999999999999999999999999999999999999999999999999998888888899
Q ss_pred hceEEccCCCcChhcHHHHHhcCCCCCCHHHHHHHHHHhchHHHHhcCCCCccccccCCCCCCChHHHHHHHHHHhcccC
Q 001411 282 QMGLVSQEPALFATSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRN 361 (1082)
Q Consensus 282 ~i~~v~Q~~~l~~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~lp~g~~t~~g~~g~~LSgGqkqri~lARal~~~ 361 (1082)
.++|++|++++|++|++||+..... ...+++.++.+..++.+.+..+|.|+++.+++.+.+||||||||++||||++++
T Consensus 96 ~i~~v~q~~~l~~~tv~~nl~~~~~-~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~ 174 (257)
T cd03288 96 RLSIILQDPILFSGSIRFNLDPECK-CTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFVRK 174 (257)
T ss_pred hEEEECCCCcccccHHHHhcCcCCC-CCHHHHHHHHHHhCcHHHHhhcccccCcEeccCCCcCCHHHHHHHHHHHHHhcC
Confidence 9999999999999999999875432 234567777788888899999999999999999999999999999999999999
Q ss_pred CCeeEEeCcccCCCHHHHHHHHHHHHHHcCCCeEEEEccCccccccCCEEEEEeCCEEEEecCchhhhhc-CchhHHHHH
Q 001411 362 PKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRDVDTIMVLKNGQVVESGTHVDLISK-GGEYAALVN 440 (1082)
Q Consensus 362 ~~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~vtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~-~~~~~~~~~ 440 (1082)
|+++||||||++||+++++.+.+.+.++.+++|+|++||+++.+..||+|++|++|++++.|+++++.+. .+.|++++.
T Consensus 175 p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~ 254 (257)
T cd03288 175 SSILIMDEATASIDMATENILQKVVMTAFADRTVVTIAHRVSTILDADLVLVLSRGILVECDTPENLLAQEDGVFASLVR 254 (257)
T ss_pred CCEEEEeCCccCCCHHHHHHHHHHHHHhcCCCEEEEEecChHHHHhCCEEEEEECCEEEEeCCHHHHHhccchHHHHHHh
Confidence 9999999999999999999999999987778999999999999988999999999999999999998865 345666554
|
The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. |
| >cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-44 Score=389.35 Aligned_cols=226 Identities=50% Similarity=0.873 Sum_probs=208.4
Q ss_pred cEEEEEEEEECCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHHhCCCCCCcEEEECCeeCCCCCHHHHhhhce
Q 001411 205 QIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMG 284 (1082)
Q Consensus 205 ~i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 284 (1082)
.++++|++++|++. ..+++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.++
T Consensus 2 ~l~~~~l~~~~~~~-~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 80 (229)
T cd03254 2 EIEFENVNFSYDEK-KPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLRSMIG 80 (229)
T ss_pred eEEEEEEEEecCCC-CccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeHHHcCHHHHhhhEE
Confidence 58999999999742 24999999999999999999999999999999999999999999999999998877778888999
Q ss_pred EEccCCCcChhcHHHHHhcCCCCCCHHHHHHHHHHhchHHHHhcCCCCccccccCCCCCCChHHHHHHHHHHhcccCCCe
Q 001411 285 LVSQEPALFATSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKI 364 (1082)
Q Consensus 285 ~v~Q~~~l~~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~lp~g~~t~~g~~g~~LSgGqkqri~lARal~~~~~i 364 (1082)
|++|++++|+.|++||+.++.+....+++.++++..++.+.++.+|.|+++.++....+||||||||++|||||+.+|++
T Consensus 81 ~~~q~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~al~~~p~l 160 (229)
T cd03254 81 VVLQDTFLFSGTIMENIRLGRPNATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPKI 160 (229)
T ss_pred EecCCchhhhhHHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHHHhcCCCE
Confidence 99999999999999999988665556677778888889999999999999999999999999999999999999999999
Q ss_pred eEEeCcccCCCHHHHHHHHHHHHHHcCCCeEEEEccCccccccCCEEEEEeCCEEEEecCchhhhhc
Q 001411 365 LLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRDVDTIMVLKNGQVVESGTHVDLISK 431 (1082)
Q Consensus 365 lllDEpts~LD~~~~~~i~~~l~~~~~~~t~i~vtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~ 431 (1082)
+||||||++||+.+.+.+.+.|.++.+++|+|++||+++.+..||++++|++|++++.|+.+++.++
T Consensus 161 lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~~~~~~~~~~~~~~ 227 (229)
T cd03254 161 LILDEATSNIDTETEKLIQEALEKLMKGRTSIIIAHRLSTIKNADKILVLDDGKIIEEGTHDELLAK 227 (229)
T ss_pred EEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhhCCEEEEEeCCeEEEeCCHHHHHhh
Confidence 9999999999999999999999988778999999999999888999999999999999988777543
|
In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-45 Score=404.73 Aligned_cols=214 Identities=32% Similarity=0.558 Sum_probs=192.7
Q ss_pred CcEEEEEEEEECCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHHhCCCCCCcEEEECCeeCCCCCHHHHhhhc
Q 001411 204 GQIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQM 283 (1082)
Q Consensus 204 ~~i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i 283 (1082)
..++++||+++|++ ..+++|+||+|++||+++++|||||||||+|++|+|+.+|++|+|.++|+++..++++ ++.|
T Consensus 4 ~~l~i~~v~k~yg~--~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp~--kR~i 79 (352)
T COG3842 4 PALEIRNVSKSFGD--FTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPE--KRPI 79 (352)
T ss_pred ceEEEEeeeeecCC--eeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChh--hccc
Confidence 35999999999983 4599999999999999999999999999999999999999999999999999998876 4679
Q ss_pred eEEccCCCcChh-cHHHHHhcCCCCC---C----HHHHHHHHHHhchHHHHhcCCCCccccccCCCCCCChHHHHHHHHH
Q 001411 284 GLVSQEPALFAT-SIANNILLGKEDA---S----MDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIA 355 (1082)
Q Consensus 284 ~~v~Q~~~l~~~-ti~~ni~~g~~~~---~----~~~~~~~~~~~~~~~~i~~lp~g~~t~~g~~g~~LSgGqkqri~lA 355 (1082)
|+|+|+..||+. ||+|||.||.... . .+++.++++.+++.++-.+.|. +|||||+||||||
T Consensus 80 g~VFQ~YALFPHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~~R~p~-----------qLSGGQqQRVALA 148 (352)
T COG3842 80 GMVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFADRKPH-----------QLSGGQQQRVALA 148 (352)
T ss_pred ceeecCcccCCCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhhhhhChh-----------hhChHHHHHHHHH
Confidence 999999999988 9999999997611 1 2478888888888887777664 8999999999999
Q ss_pred HhcccCCCeeEEeCcccCCCHHHHHHHHHHHHHHc--CCCeEEEEccCcccc-ccCCEEEEEeCCEEEEecCchhhhhcC
Q 001411 356 RAVLRNPKILLLDEATSALDAESELIVQRALEKIM--SNRTTIVVAHRLSTV-RDVDTIMVLKNGQVVESGTHVDLISKG 432 (1082)
Q Consensus 356 Ral~~~~~illlDEpts~LD~~~~~~i~~~l~~~~--~~~t~i~vtH~~~~~-~~~d~i~~l~~G~i~~~g~~~~l~~~~ 432 (1082)
|||..+|++||||||+||||.+-+..++..++++. .+.|.|+|||+.++. ..+|||.||++|+|...|+++|+....
T Consensus 149 RAL~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqeEAl~msDrI~Vm~~G~I~Q~gtP~eiY~~P 228 (352)
T COG3842 149 RALVPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQEEALAMSDRIAVMNDGRIEQVGTPEEIYERP 228 (352)
T ss_pred HHhhcCcchhhhcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhccceEEccCCceeecCCHHHHhhCc
Confidence 99999999999999999999999999988888764 378999999999875 568999999999999999999998764
|
|
| >cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-44 Score=390.09 Aligned_cols=233 Identities=53% Similarity=0.850 Sum_probs=212.3
Q ss_pred EEEEEEEEECCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHHhCCCCCCcEEEECCeeCCCCCHHHHhhhceE
Q 001411 206 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGL 285 (1082)
Q Consensus 206 i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 285 (1082)
++++|++++|++. ..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.++|
T Consensus 1 l~~~~l~~~~~~~-~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~~~~~~~~~~~~~~i~~ 79 (236)
T cd03253 1 IEFENVTFAYDPG-RPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLRRAIGV 79 (236)
T ss_pred CEEEEEEEEeCCC-CceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEhhhCCHHHHHhhEEE
Confidence 4689999999642 349999999999999999999999999999999999999999999999999988888888889999
Q ss_pred EccCCCcChhcHHHHHhcCCCCCCHHHHHHHHHHhchHHHHhcCCCCccccccCCCCCCChHHHHHHHHHHhcccCCCee
Q 001411 286 VSQEPALFATSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKIL 365 (1082)
Q Consensus 286 v~Q~~~l~~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~lp~g~~t~~g~~g~~LSgGqkqri~lARal~~~~~il 365 (1082)
++|++++|+.|++||+.++.+....+++.++++..++.+.+..+|.|+++.+..+..+||||||||++|||||+++|+++
T Consensus 80 ~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~la~aL~~~p~ll 159 (236)
T cd03253 80 VPQDTVLFNDTIGYNIRYGRPDATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPPIL 159 (236)
T ss_pred ECCCChhhcchHHHHHhhcCCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCCEE
Confidence 99999999999999999876555556677778888888999999999999999999999999999999999999999999
Q ss_pred EEeCcccCCCHHHHHHHHHHHHHHcCCCeEEEEccCccccccCCEEEEEeCCEEEEecCchhhhhcCchhHHHH
Q 001411 366 LLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRDVDTIMVLKNGQVVESGTHVDLISKGGEYAALV 439 (1082)
Q Consensus 366 llDEpts~LD~~~~~~i~~~l~~~~~~~t~i~vtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~ 439 (1082)
||||||++||+.+...+.+.|.++.+++|+|++||+++.+..||++++|++|++++.|+.+++......|+..+
T Consensus 160 llDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~d~~~~l~~g~i~~~~~~~~~~~~~~~~~~~~ 233 (236)
T cd03253 160 LLDEATSALDTHTEREIQAALRDVSKGRTTIVIAHRLSTIVNADKIIVLKDGRIVERGTHEELLAKGGLYAEMW 233 (236)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHhCCEEEEEECCEEEeeCCHHHHhhcccHHHHHH
Confidence 99999999999999999999998866889999999999998899999999999999999988877665555543
|
Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-44 Score=385.65 Aligned_cols=220 Identities=44% Similarity=0.761 Sum_probs=202.6
Q ss_pred ccEEEEeEEEECCCCCCcccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCccCCCCCHHHHhcc
Q 001411 833 GNIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRK 912 (1082)
Q Consensus 833 g~I~~~~Vs~~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR~~ 912 (1082)
|.|+++|++++|+.. ..++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.++|.++...+...+|+.
T Consensus 1 ~~l~~~~l~~~~~~~-~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 79 (220)
T cd03245 1 GRIEFRNVSFSYPNQ-EIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLRRN 79 (220)
T ss_pred CeEEEEEEEEEcCCC-CcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhHHCCHHHHHhh
Confidence 468999999999632 2469999999999999999999999999999999999999999999999999988887788899
Q ss_pred eEEEcccCccccccHHHHhccCCCCCCHHHHHHHHHHhcHHHHHhhCcccccccccCCCCCCChhHHHHHHHHHHHccCC
Q 001411 913 IGLVQQEPALFSTTIYENIKYGNEDASEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNP 992 (1082)
Q Consensus 913 i~~VpQdp~Lf~gTIreNl~~~~~~~~d~ei~~al~~a~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlaLARAlL~~~ 992 (1082)
++|+||+|.+|..|++||+.++....+.+++.++++..++.+.+..+|.|++|.+.+...+||||||||++||||++.+|
T Consensus 80 i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al~~~p 159 (220)
T cd03245 80 IGYVPQDVTLFYGTLRDNITLGAPLADDERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDP 159 (220)
T ss_pred EEEeCCCCccccchHHHHhhcCCCCCCHHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHHHhcCC
Confidence 99999999999999999998764444566778889999999999999999999999888999999999999999999999
Q ss_pred CEEEeeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhccCEEEEEeCCEEEEec
Q 001411 993 SILLLDEATSALDTASENLIQEALDKLMEGRTTIMVAHRLSTIRNADKIAVLQQGKVAEIG 1053 (1082)
Q Consensus 993 ~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~~DrI~Vl~~G~ive~G 1053 (1082)
++|||||||++||+.+.+.+.+.|++..+++|+|++||+++.+..||+|++|++|++++.|
T Consensus 160 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~d~v~~l~~g~i~~~~ 220 (220)
T cd03245 160 PILLLDEPTSAMDMNSEERLKERLRQLLGDKTLIIITHRPSLLDLVDRIIVMDSGRIVADG 220 (220)
T ss_pred CEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHhCCEEEEEeCCeEeecC
Confidence 9999999999999999999999999886668999999999988779999999999998765
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. |
| >COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-45 Score=366.65 Aligned_cols=214 Identities=35% Similarity=0.576 Sum_probs=185.4
Q ss_pred cEEEEEEEEECCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHHhCCCCCCcEEEECCeeCCCCC---HHHHhh
Q 001411 205 QIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQ---LKWLRE 281 (1082)
Q Consensus 205 ~i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~---~~~~~~ 281 (1082)
.|+++||+..||+. ..+|+||||+|++||+++|+|+||||||||+++|.|+.+|++|+|.++|.++.... ...+|+
T Consensus 3 ~i~~~nl~k~yp~~-~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~lr~~r~ 81 (258)
T COG3638 3 MIEVKNLSKTYPGG-HQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKLRR 81 (258)
T ss_pred eEEEeeeeeecCCC-ceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHHHHHHH
Confidence 48999999999853 46999999999999999999999999999999999999999999999999988776 556788
Q ss_pred hceEEccCCCcChh-cHHHHHhcCCCCC-----------CH---HHHHHHHHHhchHHHHhcCCCCccccccCCCCCCCh
Q 001411 282 QMGLVSQEPALFAT-SIANNILLGKEDA-----------SM---DRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSG 346 (1082)
Q Consensus 282 ~i~~v~Q~~~l~~~-ti~~ni~~g~~~~-----------~~---~~~~~~~~~~~~~~~i~~lp~g~~t~~g~~g~~LSg 346 (1082)
+|||++|++.|.+. ||.+|++.|+-.. +. ....++++..++.+. .-.+..+|||
T Consensus 82 ~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~-----------A~qra~~LSG 150 (258)
T COG3638 82 DIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDK-----------AYQRASTLSG 150 (258)
T ss_pred hceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHH-----------HHHHhccCCc
Confidence 99999999999877 9999999875432 12 223344445544443 3345568999
Q ss_pred HHHHHHHHHHhcccCCCeeEEeCcccCCCHHHHHHHHHHHHHHc--CCCeEEEEccCccccc-cCCEEEEEeCCEEEEec
Q 001411 347 GQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIM--SNRTTIVVAHRLSTVR-DVDTIMVLKNGQVVESG 423 (1082)
Q Consensus 347 Gqkqri~lARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~--~~~t~i~vtH~~~~~~-~~d~i~~l~~G~i~~~g 423 (1082)
||+|||+|||||+++|+|+|-|||+|+|||.+.+.+++.|++.. .|.|+|+.-|+++..+ +||||+-|++|+|+.+|
T Consensus 151 GQQQRVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdlA~~Y~~Riigl~~G~ivfDg 230 (258)
T COG3638 151 GQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDLAKKYADRIIGLKAGRIVFDG 230 (258)
T ss_pred chhHHHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHHhhheEecCCcEEEeC
Confidence 99999999999999999999999999999999999999999874 4789999999999986 59999999999999999
Q ss_pred Cchhhhh
Q 001411 424 THVDLIS 430 (1082)
Q Consensus 424 ~~~~l~~ 430 (1082)
+++|+-+
T Consensus 231 ~~~el~~ 237 (258)
T COG3638 231 PASELTD 237 (258)
T ss_pred ChhhhhH
Confidence 9998644
|
|
| >COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-45 Score=353.69 Aligned_cols=208 Identities=32% Similarity=0.502 Sum_probs=187.3
Q ss_pred EEEEeEEEECCCCCCcccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCccCCCCCHH---HHhc
Q 001411 835 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLR---SLRR 911 (1082)
Q Consensus 835 I~~~~Vs~~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~---~lR~ 911 (1082)
|+|+||+.+|+. +.++|+||||+|++||.+-++|||||||||++++|++...|+.|+|.++|.|++++.-+ -||+
T Consensus 2 I~f~~V~k~Y~~--g~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~LRR 79 (223)
T COG2884 2 IRFENVSKAYPG--GREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFLRR 79 (223)
T ss_pred eeehhhhhhcCC--CchhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccchhhh
Confidence 899999999984 46799999999999999999999999999999999999999999999999999988755 5899
Q ss_pred ceEEEcccCcccc-ccHHHHhccCCC------CCCHHHHHHHHHHhcHHHHHhhCcccccccccCCCCCCChhHHHHHHH
Q 001411 912 KIGLVQQEPALFS-TTIYENIKYGNE------DASEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAI 984 (1082)
Q Consensus 912 ~i~~VpQdp~Lf~-gTIreNl~~~~~------~~~d~ei~~al~~a~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlaL 984 (1082)
+||+|+||-.|.. -|+.||+++... ..-.+.+.++|+.+|+.+-...+| ..|||||+||+||
T Consensus 80 ~IGvVFQD~rLL~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP-----------~~LSGGEQQRvaI 148 (223)
T COG2884 80 QIGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALP-----------SQLSGGEQQRVAI 148 (223)
T ss_pred eeeeEeeeccccccchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCc-----------cccCchHHHHHHH
Confidence 9999999998775 599999988532 112356778999999999988888 5799999999999
Q ss_pred HHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEecCchhhhc-cCEEEEEeCCEEEEecCh
Q 001411 985 ARAILKNPSILLLDEATSALDTASENLIQEALDKLM-EGRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGSH 1055 (1082)
Q Consensus 985 ARAlL~~~~ILlLDEaTS~LD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~G~~ 1055 (1082)
|||++.+|++||-||||-|||+++...|++.+.+.- .|.||++.||+.+.+.. --|++.+++|+++....+
T Consensus 149 ARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~lv~~~~~rvl~l~~Grl~~d~~~ 221 (223)
T COG2884 149 ARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLELVNRMRHRVLALEDGRLVRDESR 221 (223)
T ss_pred HHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHHHHHhccCcEEEEeCCEEEecccc
Confidence 999999999999999999999999999999999874 59999999999999977 578999999999976544
|
|
| >COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-44 Score=346.77 Aligned_cols=210 Identities=36% Similarity=0.569 Sum_probs=188.9
Q ss_pred EEEEeEEEECCCCCCcccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCccCCCCCHHHHhcceE
Q 001411 835 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRKIG 914 (1082)
Q Consensus 835 I~~~~Vs~~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR~~i~ 914 (1082)
|.+++|.|+|..- | =.++++|++||+|||+||||||||||++++.||..|.+|+|.|+|+|....++. ++-++
T Consensus 2 l~L~~V~~~y~~~---~--~~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~P~--~RPVS 74 (231)
T COG3840 2 LALDDVRFSYGHL---P--MRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPA--ERPVS 74 (231)
T ss_pred ccccceEEeeCcc---e--EEEEEeecCCcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcCCcc--cCChh
Confidence 5788999999632 2 368999999999999999999999999999999999999999999999877664 46799
Q ss_pred EEcccCccccc-cHHHHhccCCCC------CCHHHHHHHHHHhcHHHHHhhCcccccccccCCCCCCChhHHHHHHHHHH
Q 001411 915 LVQQEPALFST-TIYENIKYGNED------ASEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARA 987 (1082)
Q Consensus 915 ~VpQdp~Lf~g-TIreNl~~~~~~------~~d~ei~~al~~a~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlaLARA 987 (1082)
+++||.-||.. ||++|+.+|... ...+.+..++.++|+.+|.++|| ..||||||||+||||+
T Consensus 75 mlFQEnNLFaHLtV~qNigLGl~P~LkL~a~~r~~v~~aa~~vGl~~~~~RLP-----------~~LSGGqRQRvALARc 143 (231)
T COG3840 75 MLFQENNLFAHLTVAQNIGLGLSPGLKLNAEQREKVEAAAAQVGLAGFLKRLP-----------GELSGGQRQRVALARC 143 (231)
T ss_pred hhhhccccchhhhhhhhhcccCCcccccCHHHHHHHHHHHHHhChhhHhhhCc-----------cccCchHHHHHHHHHH
Confidence 99999999975 999999988431 23466889999999999999998 4699999999999999
Q ss_pred HccCCCEEEeeCCCCCCCHHHHHHHHHHHHHhc--CCceEEEEecCchhhhc-cCEEEEEeCCEEEEecChHHHhhhc
Q 001411 988 ILKNPSILLLDEATSALDTASENLIQEALDKLM--EGRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGSHEQLLRKE 1062 (1082)
Q Consensus 988 lL~~~~ILlLDEaTS~LD~~te~~I~~~l~~~~--~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~G~~~eLl~~~ 1062 (1082)
|+|+.|||+||||.|+|||.-.+.+...+.... ++.|+++|||.++.+.. +|+++++++|||+++|+-+++++..
T Consensus 144 lvR~~PilLLDEPFsALdP~LR~eMl~Lv~~l~~E~~~TllmVTH~~~Da~~ia~~~~fl~~Gri~~~g~~~~~~~~~ 221 (231)
T COG3840 144 LVREQPILLLDEPFSALDPALRAEMLALVSQLCDERKMTLLMVTHHPEDAARIADRVVFLDNGRIAAQGSTQELLSGK 221 (231)
T ss_pred HhccCCeEEecCchhhcCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhhhceEEEeCCEEEeeccHHHHhccC
Confidence 999999999999999999999999999998876 46799999999999865 9999999999999999999998743
|
|
| >cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-44 Score=383.89 Aligned_cols=219 Identities=39% Similarity=0.646 Sum_probs=203.6
Q ss_pred cEEEEEEEEECCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHHhCCCCCCcEEEECCeeCCCCCHHHHhhhce
Q 001411 205 QIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMG 284 (1082)
Q Consensus 205 ~i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 284 (1082)
.++++|++++|++...++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.++
T Consensus 2 ~l~~~~l~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 81 (221)
T cd03244 2 DIEFKNVSLRYRPNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDLRSRIS 81 (221)
T ss_pred cEEEEEEEEecCCCCcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhHhCCHHHHhhhEE
Confidence 58999999999754345999999999999999999999999999999999999999999999999998888888889999
Q ss_pred EEccCCCcChhcHHHHHhcCCCCCCHHHHHHHHHHhchHHHHhcCCCCccccccCCCCCCChHHHHHHHHHHhcccCCCe
Q 001411 285 LVSQEPALFATSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKI 364 (1082)
Q Consensus 285 ~v~Q~~~l~~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~lp~g~~t~~g~~g~~LSgGqkqri~lARal~~~~~i 364 (1082)
|++|++.+++.|++||+.+... ...+++.++++..++.+++.++|.|+++..++.+.+||||||||++|||||+.+|++
T Consensus 82 ~~~q~~~l~~~tv~enl~~~~~-~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~l 160 (221)
T cd03244 82 IIPQDPVLFSGTIRSNLDPFGE-YSDEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSKI 160 (221)
T ss_pred EECCCCccccchHHHHhCcCCC-CCHHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHHHHHhcCCCE
Confidence 9999999999999999986543 356778888888999999999999999999999999999999999999999999999
Q ss_pred eEEeCcccCCCHHHHHHHHHHHHHHcCCCeEEEEccCccccccCCEEEEEeCCEEEEecC
Q 001411 365 LLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRDVDTIMVLKNGQVVESGT 424 (1082)
Q Consensus 365 lllDEpts~LD~~~~~~i~~~l~~~~~~~t~i~vtH~~~~~~~~d~i~~l~~G~i~~~g~ 424 (1082)
+||||||++||+.+++.+.+.|+++.+++|+|++||+++.+..||++++|++|++++.|+
T Consensus 161 lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~~~~~~~ 220 (221)
T cd03244 161 LVLDEATASVDPETDALIQKTIREAFKDCTVLTIAHRLDTIIDSDRILVLDKGRVVEFDS 220 (221)
T ss_pred EEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCeEEecCC
Confidence 999999999999999999999998877789999999999998899999999999998775
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-44 Score=381.19 Aligned_cols=215 Identities=39% Similarity=0.636 Sum_probs=194.2
Q ss_pred cEEEEeEEEECCCCCCcccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCccCC-CCCHHHHhcc
Q 001411 834 NIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIR-TLNLRSLRRK 912 (1082)
Q Consensus 834 ~I~~~~Vs~~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~-~i~~~~lR~~ 912 (1082)
.|+++|++|+|+++ .++|+|+||+|++||.++|+|+||||||||+++|.|++.|++|.|.+||.+++ ..+...+|++
T Consensus 3 ~i~~~~l~~~y~~~--~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~~~~~ 80 (235)
T COG1122 3 MIEAENLSFRYPGR--KAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELRQK 80 (235)
T ss_pred eEEEEEEEEEcCCC--ceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHHhhcc
Confidence 48999999999844 58999999999999999999999999999999999999999999999999998 4788999999
Q ss_pred eEEEcccC--ccccccHHHHhccCCC--CCCHHH----HHHHHHHhcHHHHHhhCcccccccccCCCCCCChhHHHHHHH
Q 001411 913 IGLVQQEP--ALFSTTIYENIKYGNE--DASEIE----LMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAI 984 (1082)
Q Consensus 913 i~~VpQdp--~Lf~gTIreNl~~~~~--~~~d~e----i~~al~~a~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlaL 984 (1082)
+|+|+|+| ++|..||.+.+++|.. ..+.+| +.++++.+++.++.++. ..+||||||||+||
T Consensus 81 vG~VfQnpd~q~~~~tV~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~~~~~r~-----------p~~LSGGqkqRvaI 149 (235)
T COG1122 81 VGLVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEERVAEALELVGLEELLDRP-----------PFNLSGGQKQRVAI 149 (235)
T ss_pred eEEEEECcccccccCcHHHHHhhchhhcCCCHHHHHHHHHHHHHHcCchhhccCC-----------ccccCCcceeeHHh
Confidence 99999999 7999999999999743 234433 66777788887764443 36899999999999
Q ss_pred HHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHhcC--CceEEEEecCchhhhc-cCEEEEEeCCEEEEecChHHHhhh
Q 001411 985 ARAILKNPSILLLDEATSALDTASENLIQEALDKLME--GRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGSHEQLLRK 1061 (1082)
Q Consensus 985 ARAlL~~~~ILlLDEaTS~LD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~G~~~eLl~~ 1061 (1082)
|.+|..+|+|||||||||+||+...+.+.+.++++.+ ++|+|+|||+++.+.. |||++||++|+++.+|+|+++.++
T Consensus 150 A~vLa~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~~~~~~ad~v~vl~~G~i~~~g~p~~i~~~ 229 (235)
T COG1122 150 AGVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLELVLEYADRVVVLDDGKILADGDPAEIFND 229 (235)
T ss_pred hHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHHHHHhhCCEEEEEECCEEeecCCHHHHhhh
Confidence 9999999999999999999999999999999999864 4799999999999987 999999999999999999999874
|
|
| >COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-44 Score=382.84 Aligned_cols=215 Identities=35% Similarity=0.643 Sum_probs=193.8
Q ss_pred cEEEEEEEEECCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHHhCCCCCCcEEEECCeeCC-CCCHHHHhhhc
Q 001411 205 QIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLK-SLQLKWLREQM 283 (1082)
Q Consensus 205 ~i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~-~~~~~~~~~~i 283 (1082)
.++++|++|+|+++ .++|+|+||++++||.++|+|+||||||||+++|.|+++|++|+|.++|.++. ..+...+|+++
T Consensus 3 ~i~~~~l~~~y~~~-~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~~~~~v 81 (235)
T COG1122 3 MIEAENLSFRYPGR-KAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELRQKV 81 (235)
T ss_pred eEEEEEEEEEcCCC-ceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHHhhcce
Confidence 47899999999876 56999999999999999999999999999999999999999999999999988 47888999999
Q ss_pred eEEccCC--CcChhcHHHHHhcCCCCC--C----HHHHHHHHHHhchHHHHhcCCCCccccccCCCCCCChHHHHHHHHH
Q 001411 284 GLVSQEP--ALFATSIANNILLGKEDA--S----MDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIA 355 (1082)
Q Consensus 284 ~~v~Q~~--~l~~~ti~~ni~~g~~~~--~----~~~~~~~~~~~~~~~~i~~lp~g~~t~~g~~g~~LSgGqkqri~lA 355 (1082)
|||+|+| ++|..||.|.++||..+. + .+++.++++.+++.++.++.| .+||||||||+|||
T Consensus 82 G~VfQnpd~q~~~~tV~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~~~~~r~p-----------~~LSGGqkqRvaIA 150 (235)
T COG1122 82 GLVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEERVAEALELVGLEELLDRPP-----------FNLSGGQKQRVAIA 150 (235)
T ss_pred EEEEECcccccccCcHHHHHhhchhhcCCCHHHHHHHHHHHHHHcCchhhccCCc-----------cccCCcceeeHHhh
Confidence 9999999 799999999999997643 2 245667777777766655554 58999999999999
Q ss_pred HhcccCCCeeEEeCcccCCCHHHHHHHHHHHHHHcC--CCeEEEEccCcccccc-CCEEEEEeCCEEEEecCchhhhhc
Q 001411 356 RAVLRNPKILLLDEATSALDAESELIVQRALEKIMS--NRTTIVVAHRLSTVRD-VDTIMVLKNGQVVESGTHVDLISK 431 (1082)
Q Consensus 356 Ral~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 431 (1082)
.+|+.+|+++|||||||+||+...+.+.+.++++.+ ++|+|++||+++.+.. ||++++|++|+++.+|++.++.+.
T Consensus 151 ~vLa~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~~~~~~ad~v~vl~~G~i~~~g~p~~i~~~ 229 (235)
T COG1122 151 GVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLELVLEYADRVVVLDDGKILADGDPAEIFND 229 (235)
T ss_pred HHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHHHHHhhCCEEEEEECCEEeecCCHHHHhhh
Confidence 999999999999999999999999999999999864 4799999999999876 999999999999999999888764
|
|
| >COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-44 Score=376.08 Aligned_cols=209 Identities=32% Similarity=0.543 Sum_probs=186.0
Q ss_pred cEEEEeEEEECCCCCCcccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCccCCCCCHHHHhcce
Q 001411 834 NIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRKI 913 (1082)
Q Consensus 834 ~I~~~~Vs~~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR~~i 913 (1082)
.|+++|++++|.+ . +||+||||+|++|+.+||+||||||||||+++++|+.+|++|+|.++|.+++.... +.+|
T Consensus 4 ~i~v~nl~v~y~~--~-~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~---~~~I 77 (254)
T COG1121 4 MIEVENLTVSYGN--R-PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRK---RLRI 77 (254)
T ss_pred EEEEeeeEEEECC--E-eeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEcccccccccc---CCeE
Confidence 4999999999963 2 69999999999999999999999999999999999999999999999998876533 5789
Q ss_pred EEEcccC---ccccccHHHHhccCCCC----------CCHHHHHHHHHHhcHHHHHhhCcccccccccCCCCCCChhHHH
Q 001411 914 GLVQQEP---ALFSTTIYENIKYGNED----------ASEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQ 980 (1082)
Q Consensus 914 ~~VpQdp---~Lf~gTIreNl~~~~~~----------~~d~ei~~al~~a~l~~~i~~lp~gldt~v~e~G~~LSgGQrQ 980 (1082)
|||||.. .-|+-||+|=+..|... .+.+++.+||+++++.++..+ ++|+ |||||+|
T Consensus 78 gYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r-------~i~~----LSGGQ~Q 146 (254)
T COG1121 78 GYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRDR-------QIGE----LSGGQKQ 146 (254)
T ss_pred EEcCcccccCCCCCcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCchhhhCC-------cccc----cCcHHHH
Confidence 9999965 35889999999886321 124789999999999988644 5655 9999999
Q ss_pred HHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHhcC-CceEEEEecCchhhhc-cCEEEEEeCCEEEEecChHHH
Q 001411 981 RVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLME-GRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGSHEQL 1058 (1082)
Q Consensus 981 rlaLARAlL~~~~ILlLDEaTS~LD~~te~~I~~~l~~~~~-~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~G~~~eL 1058 (1082)
|+.|||||+.+|++|+|||||+++|+.++..+.+.|+++.+ ||||++|+|+++.+.. +|+|+.|+ ++++..|+|++.
T Consensus 147 RV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtHDL~~v~~~~D~vi~Ln-~~~~~~G~~~~~ 225 (254)
T COG1121 147 RVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLGLVMAYFDRVICLN-RHLIASGPPEEV 225 (254)
T ss_pred HHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCcHHhHhhCCEEEEEc-CeeEeccChhhc
Confidence 99999999999999999999999999999999999999874 8999999999999965 99999996 578899999999
Q ss_pred hh
Q 001411 1059 LR 1060 (1082)
Q Consensus 1059 l~ 1060 (1082)
+.
T Consensus 226 ~~ 227 (254)
T COG1121 226 LT 227 (254)
T ss_pred cC
Confidence 86
|
|
| >cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-44 Score=388.02 Aligned_cols=232 Identities=64% Similarity=0.987 Sum_probs=208.6
Q ss_pred EEEEEEEEECCCCC-CccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHHhCCCCCCcEEEECCeeCCCCCHHHHhhhce
Q 001411 206 IEFSEVCFAYPSRP-HMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMG 284 (1082)
Q Consensus 206 i~~~~v~~~y~~~~-~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 284 (1082)
++++|+++.|++.. .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.++
T Consensus 1 l~i~~l~~~~~~~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 80 (238)
T cd03249 1 IEFKNVSFRYPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRSQIG 80 (238)
T ss_pred CeEEEEEEecCCCCCccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCEehhhcCHHHHHhhEE
Confidence 46899999997532 35999999999999999999999999999999999999999999999999988777777778899
Q ss_pred EEccCCCcChhcHHHHHhcCCCCCCHHHHHHHHHHhchHHHHhcCCCCccccccCCCCCCChHHHHHHHHHHhcccCCCe
Q 001411 285 LVSQEPALFATSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKI 364 (1082)
Q Consensus 285 ~v~Q~~~l~~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~lp~g~~t~~g~~g~~LSgGqkqri~lARal~~~~~i 364 (1082)
|++|++.+|+.|++||+.++.+....+++.+.++..++.+.+..+|.|+++..+....+||||||||++|||||+.+|++
T Consensus 81 ~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la~al~~~p~l 160 (238)
T cd03249 81 LVSQEPVLFDGTIAENIRYGKPDATDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNPKI 160 (238)
T ss_pred EECCchhhhhhhHHHHhhccCCCCCHHHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHHHHHHHHHhcCCCE
Confidence 99999999999999999987655455566667777788888999999999999999999999999999999999999999
Q ss_pred eEEeCcccCCCHHHHHHHHHHHHHHcCCCeEEEEccCccccccCCEEEEEeCCEEEEecCchhhhhcCchhHH
Q 001411 365 LLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRDVDTIMVLKNGQVVESGTHVDLISKGGEYAA 437 (1082)
Q Consensus 365 lllDEpts~LD~~~~~~i~~~l~~~~~~~t~i~vtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~ 437 (1082)
+||||||++||+.+.+.+.+.|.++.+++|+|++||+++.+..||++++|++|++++.|+.+++......+..
T Consensus 161 lllDEP~~gLD~~~~~~l~~~l~~~~~g~~vi~~sh~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~~~~~~ 233 (238)
T cd03249 161 LLLDEATSALDAESEKLVQEALDRAMKGRTTIVIAHRLSTIRNADLIAVLQNGQVVEQGTHDELMAQKGVYAK 233 (238)
T ss_pred EEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCEEEEeCCHHHHhhcChhHHH
Confidence 9999999999999999999999987777899999999999888999999999999999998888765544443
|
In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. |
| >PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-44 Score=399.87 Aligned_cols=220 Identities=27% Similarity=0.473 Sum_probs=186.7
Q ss_pred cEEEEeEEEECCCCC--CcccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCccCCCC-------
Q 001411 834 NIELRNVSFKYPVRP--DITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTL------- 904 (1082)
Q Consensus 834 ~I~~~~Vs~~Y~~~~--~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i------- 904 (1082)
.|+++||+|+|+... +.++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||+++.+.
T Consensus 21 ~l~~~nl~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~~~~~~~~~~ 100 (320)
T PRK13631 21 ILRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNHELI 100 (320)
T ss_pred eEEEEeEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEccccccccccc
Confidence 599999999997321 24699999999999999999999999999999999999999999999999998653
Q ss_pred ---------CHHHHhcceEEEcccC--ccccccHHHHhccCCC--CCCHHHHHHHHHHhcHHHHHhhCccccc-ccccCC
Q 001411 905 ---------NLRSLRRKIGLVQQEP--ALFSTTIYENIKYGNE--DASEIELMKATKAANAHGFISRMPEGYQ-SHVGDR 970 (1082)
Q Consensus 905 ---------~~~~lR~~i~~VpQdp--~Lf~gTIreNl~~~~~--~~~d~ei~~al~~a~l~~~i~~lp~gld-t~v~e~ 970 (1082)
+...+|++++||+|+| .+|+.|+++|+.++.. ..+.++..+ . ..++++.+ |++ ...+..
T Consensus 101 ~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~---~--~~~~l~~~--gL~~~~~~~~ 173 (320)
T PRK13631 101 TNPYSKKIKNFKELRRRVSMVFQFPEYQLFKDTIEKDIMFGPVALGVKKSEAKK---L--AKFYLNKM--GLDDSYLERS 173 (320)
T ss_pred ccccccccchHHHHHhcEEEEEECchhccccchHHHHHHhhHHhcCCCHHHHHH---H--HHHHHHHc--CCChhHhcCC
Confidence 3567899999999998 6999999999987521 233333221 1 12344443 454 345667
Q ss_pred CCCCChhHHHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEecCchhhh-ccCEEEEEeCCE
Q 001411 971 GVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLM-EGRTTIMVAHRLSTIR-NADKIAVLQQGK 1048 (1082)
Q Consensus 971 G~~LSgGQrQrlaLARAlL~~~~ILlLDEaTS~LD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~-~~DrI~Vl~~G~ 1048 (1082)
+.+||||||||++|||||+++|+||||||||++||+.+.+.+.+.|++.. +++|+|+|||+++.+. .||||+||++|+
T Consensus 174 ~~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~g~TiiivtHd~~~~~~~adri~vl~~G~ 253 (320)
T PRK13631 174 PFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTMEHVLEVADEVIVMDKGK 253 (320)
T ss_pred cccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCE
Confidence 78999999999999999999999999999999999999999999998764 5889999999999885 599999999999
Q ss_pred EEEecChHHHhh
Q 001411 1049 VAEIGSHEQLLR 1060 (1082)
Q Consensus 1049 ive~G~~~eLl~ 1060 (1082)
+++.|+|+++.+
T Consensus 254 i~~~g~~~~~~~ 265 (320)
T PRK13631 254 ILKTGTPYEIFT 265 (320)
T ss_pred EEEeCCHHHHhc
Confidence 999999998765
|
|
| >COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-44 Score=362.86 Aligned_cols=222 Identities=33% Similarity=0.535 Sum_probs=193.5
Q ss_pred cEEEEeEEEECCCCCCcccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCccCCCCC---HHHHh
Q 001411 834 NIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLN---LRSLR 910 (1082)
Q Consensus 834 ~I~~~~Vs~~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~---~~~lR 910 (1082)
.|+++||+.+|| .+..+|+||||+|++||.|||+|+||||||||+++|.|+.+|++|+|.++|.++...+ ++.+|
T Consensus 3 ~i~~~nl~k~yp--~~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~lr~~r 80 (258)
T COG3638 3 MIEVKNLSKTYP--GGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKLR 80 (258)
T ss_pred eEEEeeeeeecC--CCceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHHHHHH
Confidence 489999999998 3568999999999999999999999999999999999999999999999999999887 67789
Q ss_pred cceEEEcccCcccc-ccHHHHhccCCC-----------CCC---HHHHHHHHHHhcHHHHHhhCcccccccccCCCCCCC
Q 001411 911 RKIGLVQQEPALFS-TTIYENIKYGNE-----------DAS---EIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLS 975 (1082)
Q Consensus 911 ~~i~~VpQdp~Lf~-gTIreNl~~~~~-----------~~~---d~ei~~al~~a~l~~~i~~lp~gldt~v~e~G~~LS 975 (1082)
++||+|+|++-|-+ -|+-+|+..|.- -.+ .....++|+++++.++.-. +..+||
T Consensus 81 ~~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~q-----------ra~~LS 149 (258)
T COG3638 81 RDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQ-----------RASTLS 149 (258)
T ss_pred HhceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHH-----------HhccCC
Confidence 99999999999886 499999976531 122 3345677888888776432 346799
Q ss_pred hhHHHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHhc--CCceEEEEecCchhhhc-cCEEEEEeCCEEEEe
Q 001411 976 GGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLM--EGRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEI 1052 (1082)
Q Consensus 976 gGQrQrlaLARAlL~~~~ILlLDEaTS~LD~~te~~I~~~l~~~~--~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~ 1052 (1082)
|||+||++|||||..+|+|+|-|||+|+|||++.+.|++.|++.. .|.|||+.-|.++..+. ||||+-|++|+|+-.
T Consensus 150 GGQQQRVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdlA~~Y~~Riigl~~G~ivfD 229 (258)
T COG3638 150 GGQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDLAKKYADRIIGLKAGRIVFD 229 (258)
T ss_pred cchhHHHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHHhhheEecCCcEEEe
Confidence 999999999999999999999999999999999999999999864 47899999999999965 999999999999999
Q ss_pred cChHHHhhhccchHHHHHH
Q 001411 1053 GSHEQLLRKENGIYKQLIR 1071 (1082)
Q Consensus 1053 G~~~eLl~~~~g~f~~l~~ 1071 (1082)
|++.||-+ ..+...|.
T Consensus 230 g~~~el~~---~~~~~iYg 245 (258)
T COG3638 230 GPASELTD---EALDEIYG 245 (258)
T ss_pred CChhhhhH---HHHHHHhc
Confidence 99999643 33444443
|
|
| >cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-44 Score=384.82 Aligned_cols=219 Identities=48% Similarity=0.798 Sum_probs=199.9
Q ss_pred ccccEEEEeEEEECCCCCCcccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCccCCCCCHHHHh
Q 001411 831 IKGNIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLR 910 (1082)
Q Consensus 831 ~~g~I~~~~Vs~~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR 910 (1082)
..+.|+++|++++|+.+.+.++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++...+...+|
T Consensus 8 ~~~~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~ 87 (226)
T cd03248 8 LKGIVKFQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYLH 87 (226)
T ss_pred cCceEEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCCchHHcCHHHHH
Confidence 45679999999999743234699999999999999999999999999999999999999999999999999888888888
Q ss_pred cceEEEcccCccccccHHHHhccCCCCCCHHHHHHHHHHhcHHHHHhhCcccccccccCCCCCCChhHHHHHHHHHHHcc
Q 001411 911 RKIGLVQQEPALFSTTIYENIKYGNEDASEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILK 990 (1082)
Q Consensus 911 ~~i~~VpQdp~Lf~gTIreNl~~~~~~~~d~ei~~al~~a~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlaLARAlL~ 990 (1082)
++++|+||+|.+|++|+++|+.++.......++++..+..++.++++.+|.|+++.+.....+||||||||++|||||++
T Consensus 88 ~~i~~~~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG~~qrv~laral~~ 167 (226)
T cd03248 88 SKVSLVGQEPVLFARSLQDNIAYGLQSCSFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARALIR 167 (226)
T ss_pred hhEEEEecccHHHhhhHHHHhccccCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhc
Confidence 99999999999999999999997654444556666667778889999999999998999999999999999999999999
Q ss_pred CCCEEEeeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhccCEEEEEeCCEE
Q 001411 991 NPSILLLDEATSALDTASENLIQEALDKLMEGRTTIMVAHRLSTIRNADKIAVLQQGKV 1049 (1082)
Q Consensus 991 ~~~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~~DrI~Vl~~G~i 1049 (1082)
+|++|||||||++||+++.+.+.+.|++..+++|+|+|||+++.+..||+|++|++|++
T Consensus 168 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~i 226 (226)
T cd03248 168 NPQVLILDEATSALDAESEQQVQQALYDWPERRTVLVIAHRLSTVERADQILVLDGGRI 226 (226)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHhCCEEEEecCCcC
Confidence 99999999999999999999999999998777899999999999988999999999975
|
Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. |
| >COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-44 Score=375.15 Aligned_cols=210 Identities=30% Similarity=0.544 Sum_probs=183.8
Q ss_pred cEEEEEEEEECCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHHhCCCCCCcEEEECCeeCCCCCHHHHhhhce
Q 001411 205 QIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMG 284 (1082)
Q Consensus 205 ~i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 284 (1082)
.|+++|++|+|.++ ++|+||||++++|++++|+||||||||||+|+|+|+++|++|+|.+.|.+.+.... +.+||
T Consensus 4 ~i~v~nl~v~y~~~--~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~---~~~Ig 78 (254)
T COG1121 4 MIEVENLTVSYGNR--PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRK---RLRIG 78 (254)
T ss_pred EEEEeeeEEEECCE--eeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEcccccccccc---CCeEE
Confidence 58999999999854 49999999999999999999999999999999999999999999999987654332 46799
Q ss_pred EEccCC---CcChhcHHHHHhcCCCCC----------CHHHHHHHHHHhchHHHHhcCCCCccccccCCCCCCChHHHHH
Q 001411 285 LVSQEP---ALFATSIANNILLGKEDA----------SMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQR 351 (1082)
Q Consensus 285 ~v~Q~~---~l~~~ti~~ni~~g~~~~----------~~~~~~~~~~~~~~~~~i~~lp~g~~t~~g~~g~~LSgGqkqr 351 (1082)
||||.. |-|+-||+|-+.+|.... +.+++.++++.+++.++.++ .-..|||||+||
T Consensus 79 YVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r-----------~i~~LSGGQ~QR 147 (254)
T COG1121 79 YVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRDR-----------QIGELSGGQKQR 147 (254)
T ss_pred EcCcccccCCCCCcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCchhhhCC-----------cccccCcHHHHH
Confidence 999965 678999999999985322 24778889998888766543 234799999999
Q ss_pred HHHHHhcccCCCeeEEeCcccCCCHHHHHHHHHHHHHHcC-CCeEEEEccCccccc-cCCEEEEEeCCEEEEecCchhhh
Q 001411 352 IAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMS-NRTTIVVAHRLSTVR-DVDTIMVLKNGQVVESGTHVDLI 429 (1082)
Q Consensus 352 i~lARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~-~~t~i~vtH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~ 429 (1082)
|-|||||+++|++|+|||||+++|+.++..+.+.|.++++ |+||++||||++.+. ++|+|+.| |+++...|++++..
T Consensus 148 V~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtHDL~~v~~~~D~vi~L-n~~~~~~G~~~~~~ 226 (254)
T COG1121 148 VLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLGLVMAYFDRVICL-NRHLIASGPPEEVL 226 (254)
T ss_pred HHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCcHHhHhhCCEEEEE-cCeeEeccChhhcc
Confidence 9999999999999999999999999999999999999865 899999999999875 58999999 56788999999987
Q ss_pred hc
Q 001411 430 SK 431 (1082)
Q Consensus 430 ~~ 431 (1082)
+.
T Consensus 227 ~~ 228 (254)
T COG1121 227 TE 228 (254)
T ss_pred CH
Confidence 64
|
|
| >COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-44 Score=365.53 Aligned_cols=222 Identities=33% Similarity=0.529 Sum_probs=186.0
Q ss_pred cEEEEEEEEECCCCCC--ccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHHhCCCCCCcEEEECCeeCCCC-CHHHHhh
Q 001411 205 QIEFSEVCFAYPSRPH--MVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSL-QLKWLRE 281 (1082)
Q Consensus 205 ~i~~~~v~~~y~~~~~--~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~-~~~~~~~ 281 (1082)
.++++|+++.|+.... ++|+||||++.+||+++|+|+||||||||.++|+|+.+|++|+|.++|.++... .....++
T Consensus 3 ~l~v~nl~~~y~~~~~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~~ 82 (252)
T COG1124 3 LLSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFYR 82 (252)
T ss_pred eEEEeceEEEecCCcchhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhhcc
Confidence 4889999999975431 399999999999999999999999999999999999999999999999877643 3346778
Q ss_pred hceEEccCCCc-Chh--cHHHHHhcCCC----CCCHHHHHHHHHHhchHH-HHhcCCCCccccccCCCCCCChHHHHHHH
Q 001411 282 QMGLVSQEPAL-FAT--SIANNILLGKE----DASMDRVIEAAKAANAHS-FVEGLPDGYQTQVGEGGTQLSGGQKQRIA 353 (1082)
Q Consensus 282 ~i~~v~Q~~~l-~~~--ti~~ni~~g~~----~~~~~~~~~~~~~~~~~~-~i~~lp~g~~t~~g~~g~~LSgGqkqri~ 353 (1082)
.|.+|+|||.- +|. ||++-|.-+.. ....+++.++++.+++.+ ++.+.|+ +|||||+||||
T Consensus 83 ~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~~~~~~~~~i~~~L~~VgL~~~~l~R~P~-----------eLSGGQ~QRia 151 (252)
T COG1124 83 PVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQQRIAELLDQVGLPPSFLDRRPH-----------ELSGGQRQRIA 151 (252)
T ss_pred ceeEEecCCccccCcchhHHHHHhhhhccCCccHHHHHHHHHHHHcCCCHHHHhcCch-----------hcChhHHHHHH
Confidence 89999999962 332 77776653321 123455777777777643 5556664 79999999999
Q ss_pred HHHhcccCCCeeEEeCcccCCCHHHHHHHHHHHHHHcCC--CeEEEEccCcccccc-CCEEEEEeCCEEEEecCchhhhh
Q 001411 354 IARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSN--RTTIVVAHRLSTVRD-VDTIMVLKNGQVVESGTHVDLIS 430 (1082)
Q Consensus 354 lARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~--~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~ 430 (1082)
|||||..+|++||||||||+||+..+..|++.+.+++++ -|.|+|||++..+.+ ||||+||++|+++|.++.+++..
T Consensus 152 IARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~~v~~~cdRi~Vm~~G~ivE~~~~~~l~~ 231 (252)
T COG1124 152 IARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLALVEHMCDRIAVMDNGQIVEIGPTEELLS 231 (252)
T ss_pred HHHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHHHHHHHhhheeeeeCCeEEEeechhhhhc
Confidence 999999999999999999999999999999999988764 599999999999987 89999999999999999999987
Q ss_pred c-CchhHH
Q 001411 431 K-GGEYAA 437 (1082)
Q Consensus 431 ~-~~~~~~ 437 (1082)
. ...|.+
T Consensus 232 ~~~h~ytr 239 (252)
T COG1124 232 HPSHPYTR 239 (252)
T ss_pred CCccHHHH
Confidence 6 334433
|
|
| >cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-44 Score=387.82 Aligned_cols=212 Identities=40% Similarity=0.612 Sum_probs=182.9
Q ss_pred EEEEeEEEECCCCCCcccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCccCCCCCH---HHHhc
Q 001411 835 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNL---RSLRR 911 (1082)
Q Consensus 835 I~~~~Vs~~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~---~~lR~ 911 (1082)
|+++||+++|+ +.++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++...+. ..+|+
T Consensus 1 l~~~~l~~~~~---~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 77 (235)
T cd03261 1 IELRGLTKSFG---GRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLRR 77 (235)
T ss_pred CeEEEEEEEEC---CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChhhHHHHhc
Confidence 47899999996 3469999999999999999999999999999999999999999999999999987764 56789
Q ss_pred ceEEEcccCccccc-cHHHHhccCCC---CCCHH----HHHHHHHHhcHHHHHhhCcccccccccCCCCCCChhHHHHHH
Q 001411 912 KIGLVQQEPALFST-TIYENIKYGNE---DASEI----ELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVA 983 (1082)
Q Consensus 912 ~i~~VpQdp~Lf~g-TIreNl~~~~~---~~~d~----ei~~al~~a~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrla 983 (1082)
+++||||++.+|+. |+++|+.++.. ..+.+ ++.++++..++.++. .....+||||||||++
T Consensus 78 ~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LSgG~~qrv~ 146 (235)
T cd03261 78 RMGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLRGAE-----------DLYPAELSGGMKKRVA 146 (235)
T ss_pred ceEEEccCcccCCCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCchhh-----------cCChhhCCHHHHHHHH
Confidence 99999999999986 99999986421 12322 344455555544332 2333579999999999
Q ss_pred HHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHhcC--CceEEEEecCchhhhc-cCEEEEEeCCEEEEecChHHHhh
Q 001411 984 IARAILKNPSILLLDEATSALDTASENLIQEALDKLME--GRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGSHEQLLR 1060 (1082)
Q Consensus 984 LARAlL~~~~ILlLDEaTS~LD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~G~~~eLl~ 1060 (1082)
|||||+++|+||||||||++||+.+.+.+.+.|++..+ ++|||+|||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 147 ia~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 226 (235)
T cd03261 147 LARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGTPEELRA 226 (235)
T ss_pred HHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhcCEEEEEECCeEEEecCHHHHcC
Confidence 99999999999999999999999999999999998753 7899999999999875 99999999999999999999876
|
The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-43 Score=380.71 Aligned_cols=219 Identities=42% Similarity=0.724 Sum_probs=200.1
Q ss_pred cEEEEEEEEECCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHHhCCCCCCcEEEECCeeCCCCCHHHHhhhce
Q 001411 205 QIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMG 284 (1082)
Q Consensus 205 ~i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 284 (1082)
.++++|+++.|++....+|+|+||++++|++++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.++
T Consensus 2 ~l~~~~l~~~~~~~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 81 (220)
T cd03245 2 RIEFRNVSFSYPNQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLRRNIG 81 (220)
T ss_pred eEEEEEEEEEcCCCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhHHCCHHHHHhhEE
Confidence 58999999999753345999999999999999999999999999999999999999999999999987777777788999
Q ss_pred EEccCCCcChhcHHHHHhcCCCCCCHHHHHHHHHHhchHHHHhcCCCCccccccCCCCCCChHHHHHHHHHHhcccCCCe
Q 001411 285 LVSQEPALFATSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKI 364 (1082)
Q Consensus 285 ~v~Q~~~l~~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~lp~g~~t~~g~~g~~LSgGqkqri~lARal~~~~~i 364 (1082)
|++|++++|+.|++||+.++.+....+++.+.++..++.+.++..|.|++|.+.....+||||||||++||||++.+|++
T Consensus 82 ~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al~~~p~l 161 (220)
T cd03245 82 YVPQDVTLFYGTLRDNITLGAPLADDERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPPI 161 (220)
T ss_pred EeCCCCccccchHHHHhhcCCCCCCHHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHHHhcCCCE
Confidence 99999999989999999887554455667778888889889999999999999999999999999999999999999999
Q ss_pred eEEeCcccCCCHHHHHHHHHHHHHHcCCCeEEEEccCccccccCCEEEEEeCCEEEEec
Q 001411 365 LLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRDVDTIMVLKNGQVVESG 423 (1082)
Q Consensus 365 lllDEpts~LD~~~~~~i~~~l~~~~~~~t~i~vtH~~~~~~~~d~i~~l~~G~i~~~g 423 (1082)
+||||||++||+.+...+.+.|+++.+++|+|++||+++.+..||++++|++|++++.|
T Consensus 162 lllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~d~v~~l~~g~i~~~~ 220 (220)
T cd03245 162 LLLDEPTSAMDMNSEERLKERLRQLLGDKTLIIITHRPSLLDLVDRIIVMDSGRIVADG 220 (220)
T ss_pred EEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHhCCEEEEEeCCeEeecC
Confidence 99999999999999999999999986668999999999988789999999999998654
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. |
| >cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-44 Score=386.80 Aligned_cols=212 Identities=37% Similarity=0.612 Sum_probs=183.5
Q ss_pred EEEEeEEEECCCCCCcccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHhccc-----cCCccEEEECCccCCCCC--HH
Q 001411 835 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFY-----DPISGTVLIDGYDIRTLN--LR 907 (1082)
Q Consensus 835 I~~~~Vs~~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~-----~p~~G~I~idG~di~~i~--~~ 907 (1082)
|+++||+++|+ +.++|+|+||+|++||++||+|+||||||||+++|+|++ +|++|+|.++|.++.+.+ ..
T Consensus 1 i~~~~l~~~~~---~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 77 (227)
T cd03260 1 IELRDLNVYYG---DKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVL 77 (227)
T ss_pred CEEEEEEEEcC---CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcchHHH
Confidence 57899999996 346999999999999999999999999999999999999 999999999999998776 56
Q ss_pred HHhcceEEEcccCccccccHHHHhccCCCC---C----CHHHHHHHHHHhcHHHHHhhCcccccccccCCCCCCChhHHH
Q 001411 908 SLRRKIGLVQQEPALFSTTIYENIKYGNED---A----SEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQ 980 (1082)
Q Consensus 908 ~lR~~i~~VpQdp~Lf~gTIreNl~~~~~~---~----~d~ei~~al~~a~l~~~i~~lp~gldt~v~e~G~~LSgGQrQ 980 (1082)
.+|++++|+||++.+|..|++||+.++... . .++++.++++..++.+...+.++ +.+|||||||
T Consensus 78 ~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---------~~~LSgG~~q 148 (227)
T cd03260 78 ELRRRVGMVFQKPNPFPGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDEVKDRLH---------ALGLSGGQQQ 148 (227)
T ss_pred HHHhhEEEEecCchhccccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChHHhccCC---------cccCCHHHHH
Confidence 788999999999999988999999864221 1 12345566666666554433211 4689999999
Q ss_pred HHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhc-cCEEEEEeCCEEEEecChHHH
Q 001411 981 RVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLMEGRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGSHEQL 1058 (1082)
Q Consensus 981 rlaLARAlL~~~~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~G~~~eL 1058 (1082)
|++|||||+++|++|||||||++||+++.+.+.+.|++..+++|+|++||+++.+.. ||+|++|++|++++.|+++++
T Consensus 149 rv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 227 (227)
T cd03260 149 RLCLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKKEYTIVIVTHNMQQAARVADRTAFLLNGRLVEFGPTEQI 227 (227)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhhCcEEEEEeccHHHHHHhCCEEEEEeCCEEEEecCcccC
Confidence 999999999999999999999999999999999999988655899999999999865 999999999999999998764
|
The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). |
| >COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-43 Score=366.34 Aligned_cols=207 Identities=39% Similarity=0.587 Sum_probs=174.0
Q ss_pred EEEEeEEEECCCCCC-cccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCccCCCCCHH---HH-
Q 001411 835 IELRNVSFKYPVRPD-ITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLR---SL- 909 (1082)
Q Consensus 835 I~~~~Vs~~Y~~~~~-~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~---~l- 909 (1082)
++++||+..|..... .++|+++||+|++||.|||+||||||||||+++|.++..|++|.|.++|.|+..++.+ .+
T Consensus 2 i~~~~v~k~y~~~~~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~R 81 (226)
T COG1136 2 IELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKLR 81 (226)
T ss_pred cEEeeeEEEeccCCcceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHHH
Confidence 679999999974322 4799999999999999999999999999999999999999999999999999999854 34
Q ss_pred hcceEEEcccCcccc-ccHHHHhccC----CCCC--CHHHHHHHHHHhcHHHHHhhCcccccccccCCCCCCChhHHHHH
Q 001411 910 RRKIGLVQQEPALFS-TTIYENIKYG----NEDA--SEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRV 982 (1082)
Q Consensus 910 R~~i~~VpQdp~Lf~-gTIreNl~~~----~~~~--~d~ei~~al~~a~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrl 982 (1082)
|++||+|+|+..|++ -|++||+.+. .... ..+...+.++.+++.+... .....+||||||||+
T Consensus 82 ~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~----------~~~p~eLSGGqqQRV 151 (226)
T COG1136 82 RKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLL----------KKKPSELSGGQQQRV 151 (226)
T ss_pred HHhEEEECccCCCCCCCCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhc----------cCCchhcCHHHHHHH
Confidence 567999999999886 4999999842 1111 1233444555556654433 123467999999999
Q ss_pred HHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHhc--CCceEEEEecCchhhhccCEEEEEeCCEEEE
Q 001411 983 AIARAILKNPSILLLDEATSALDTASENLIQEALDKLM--EGRTTIMVAHRLSTIRNADKIAVLQQGKVAE 1051 (1082)
Q Consensus 983 aLARAlL~~~~ILlLDEaTS~LD~~te~~I~~~l~~~~--~~~TvI~IaHrl~ti~~~DrI~Vl~~G~ive 1051 (1082)
||||||+.+|+|++.||||.+||.+|.+.|.+.+++.. .++|+|+|||+......|||++.|.+|++.+
T Consensus 152 AIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA~~~dr~i~l~dG~~~~ 222 (226)
T COG1136 152 AIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAKYADRVIELKDGKIEE 222 (226)
T ss_pred HHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHhCCEEEEEeCCeeee
Confidence 99999999999999999999999999999999999874 3789999999999999999999999999543
|
|
| >PRK14269 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-43 Score=386.54 Aligned_cols=219 Identities=32% Similarity=0.546 Sum_probs=191.6
Q ss_pred cEEEEeEEEECCCCCCcccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccc---CCccEEEECCccCCCCCHHHHh
Q 001411 834 NIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYD---PISGTVLIDGYDIRTLNLRSLR 910 (1082)
Q Consensus 834 ~I~~~~Vs~~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~---p~~G~I~idG~di~~i~~~~lR 910 (1082)
.|+++||+++|+ +.++|+|+||+|++||.+||+|+||||||||+++|.|+++ |++|+|.+||.++...+...+|
T Consensus 2 ~~~~~~l~~~~~---~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~ 78 (246)
T PRK14269 2 IAKTTNLNLFYG---KKQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALR 78 (246)
T ss_pred ceeeeeeEEEEC---CEeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHh
Confidence 378999999996 3469999999999999999999999999999999999985 6899999999999988888889
Q ss_pred cceEEEcccCccccccHHHHhccCCC--------CCCHHHHHHHHHHhcHHHHHhhCcccccccccCCCCCCChhHHHHH
Q 001411 911 RKIGLVQQEPALFSTTIYENIKYGNE--------DASEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRV 982 (1082)
Q Consensus 911 ~~i~~VpQdp~Lf~gTIreNl~~~~~--------~~~d~ei~~al~~a~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrl 982 (1082)
++++|+||+|.+|+.|+++|+.++.. ...++++.++++.+++.+++.. .....+.+||||||||+
T Consensus 79 ~~i~~~~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LS~G~~qrv 151 (246)
T PRK14269 79 KNVGMVFQQPNVFVKSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKD-------KLKQNALALSGGQQQRL 151 (246)
T ss_pred hhEEEEecCCccccccHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhhH-------HhcCCcccCCHHHHHHH
Confidence 99999999999999999999986421 1122345666777777554432 23445678999999999
Q ss_pred HHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhc-cCEEEEEeCCEEEEecChHHHhhh
Q 001411 983 AIARAILKNPSILLLDEATSALDTASENLIQEALDKLMEGRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGSHEQLLRK 1061 (1082)
Q Consensus 983 aLARAlL~~~~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~G~~~eLl~~ 1061 (1082)
+|||||+++|++|||||||++||+.+...+.+.|++..+++|+|+|||+++.+.. ||+|++|++|++++.|+++++...
T Consensus 152 ~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 231 (246)
T PRK14269 152 CIARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSHNLSMIMVTHNMQQGKRVADYTAFFHLGELIEFGESKEFFEN 231 (246)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhhCcEEEEEECCEEEEECCHHHHHhC
Confidence 9999999999999999999999999999999999987778999999999999864 999999999999999999999864
Q ss_pred c
Q 001411 1062 E 1062 (1082)
Q Consensus 1062 ~ 1062 (1082)
+
T Consensus 232 ~ 232 (246)
T PRK14269 232 P 232 (246)
T ss_pred C
Confidence 3
|
|
| >COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-40 Score=381.34 Aligned_cols=474 Identities=18% Similarity=0.142 Sum_probs=349.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccccccC---CChhHHHHHHHhhHHHHHHHHH
Q 001411 554 QVALIFVGLAVVTIPVYLLQHYFYTLMGEHLTARVRLSMFSAILSNEIGWFDLDE---NNTGLLISTLAADATLVRSALA 630 (1082)
Q Consensus 554 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~l~~~~~ffd~~~---~~~G~il~r~s~D~~~i~~~~~ 630 (1082)
..+.+|.+++.+..+....+.|+......++-.-|-+.+.++-+...-.|+.... +..-..=.|+..|+...-+...
T Consensus 87 ~~l~~f~~ia~~~v~~~v~~~~L~~~l~~~wR~wLt~~l~~~wl~~~~~y~l~~~~~~~~~dNpDQRi~eDi~~~t~~t~ 166 (604)
T COG4178 87 QQLQVFAIIAGLLVLLNVAQTWLNQMLRLRWREWLTKDLLDRWLDPRRYYRLAQAGGIGLIDNPDQRIQEDIRNFTETTL 166 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHhcccccCCCChHHhHHHHHHHHHhhHH
Confidence 3466777777778888888888888888888888888888888887744433211 0001223588889888777666
Q ss_pred HHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 001411 631 DRLSIIVQNVALTVTAFVIAF---------------ILSWRLAAVVAASLPLLIGAFVAEQLFLKGFGGDYNRAYSRATS 695 (1082)
Q Consensus 631 ~~l~~~~~~~~~~~~~~~~~~---------------~~~~~l~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 695 (1082)
.....++.+++.++....+.. .+...+.+++++.+++.-++.....+.+-+..-+..+..+....
T Consensus 167 ~l~~g~l~s~islisF~~iLw~lsg~~~~~~~g~~~~I~g~mv~~~i~Ya~~~s~~~~~iGr~Li~LN~~~~~~EA~fR~ 246 (604)
T COG4178 167 DLSFGLLQSVISLISFTGILWSLSGGLAFTIGGFSFGIPGYMVWAVIIYAISASLLTHLIGRPLIRLNFERQKLEADFRY 246 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccCcceEeecccccccchHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHH
Confidence 666666666655554444433 12222223333333333333444445444444455555556666
Q ss_pred HHHHHHccHHHHHHcCcHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHH
Q 001411 696 VAREAIANIRTVAAYGIEKRISIQFASELSQPNKQALLRGHISGFGYGVSQLLSLCSYALGLWYASVLIKQKGSNFGDIM 775 (1082)
Q Consensus 696 ~~~e~l~g~~tIra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 775 (1082)
.+.-..++.+.|-.|+-|+...++..+..+.......+..........+.....++...+-..++.-....|.+++|+++
T Consensus 247 ~Lvrv~enaE~IAly~GE~~Er~~l~~~f~~v~~n~~~l~~~~~~l~~~~~gy~~~s~v~P~li~ap~~f~g~i~~G~lm 326 (604)
T COG4178 247 SLVRVRENAEAIALYRGEKVERRRLDDRFDAVLGNWRRLVRAQIRLTWFQLGYGWLSVVLPILIAAPRYFSGQITFGGLM 326 (604)
T ss_pred HHHHHHhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhHHHHHHHHHhccHhhhcCcChHHHHH
Confidence 66667788899999999988877777776666655444444444444444444555555555566666788999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc--cCCCCCCCC--ccc---ccccccEEEEeEEEECCCCC
Q 001411 776 KSFMVLIITALAVAETLALAPDIVKGSQALGPVFGILYRKT--AIQPDDPAS--KEV---TEIKGNIELRNVSFKYPVRP 848 (1082)
Q Consensus 776 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~~~~~~--~~~~~~~~~--~~~---~~~~g~I~~~~Vs~~Y~~~~ 848 (1082)
.+..+...+..+++.....++.+..-.+...|+.++..... +.+++.+.. ... ...+..|+|+|++..-|+
T Consensus 327 qa~~aF~~v~sslswfi~~~~~ia~~rA~~~Rl~~f~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nl~l~~p~-- 404 (604)
T COG4178 327 QAVGAFGQVHSSLSWFIDNYDAIADWRATLLRLAEFRQALEAAQMDTEKPARTGRRIDFDDNADHGITLENLSLRTPD-- 404 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhccCcccccCcccccccccccccceeEEeeeeEECCC--
Confidence 98888888888899999999999988899999988764322 111111111 100 111467999999999873
Q ss_pred CcccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCccCCCCCHHHHhcceEEEcccCccccccHH
Q 001411 849 DITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRKIGLVQQEPALFSTTIY 928 (1082)
Q Consensus 849 ~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR~~i~~VpQdp~Lf~gTIr 928 (1082)
+.+.|+++||+|+|||.+-|.|+||||||||+++|.|+++-.+|+|.+-. -..+-|+||.|++-.||+|
T Consensus 405 ~~~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~P~-----------~~~~lflpQ~PY~p~GtLr 473 (604)
T COG4178 405 GQTLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWGSGRISMPA-----------DSALLFLPQRPYLPQGTLR 473 (604)
T ss_pred CCeeeccceeeeCCCCEEEEECCCCCCHHHHHHHHhccCccCCCceecCC-----------CCceEEecCCCCCCCccHH
Confidence 34789999999999999999999999999999999999999999987641 1358899999999999999
Q ss_pred HHhccCCCC--CCHHHHHHHHHHhcHHHHHhhCcccccccccCCCCCCChhHHHHHHHHHHHccCCCEEEeeCCCCCCCH
Q 001411 929 ENIKYGNED--ASEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDT 1006 (1082)
Q Consensus 929 eNl~~~~~~--~~d~ei~~al~~a~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlaLARAlL~~~~ILlLDEaTS~LD~ 1006 (1082)
|=|.|.... .+|+|+.++|.++++.++++++.+ ...-..-||+||||||++||.||++|++++||||||+||+
T Consensus 474 e~l~YP~~~~~~~d~~l~~vL~~vgL~~L~~rl~~-----~~~W~~vLS~GEqQRlafARilL~kP~~v~LDEATsALDe 548 (604)
T COG4178 474 EALCYPNAAPDFSDAELVAVLHKVGLGDLAERLDE-----EDRWDRVLSGGEQQRLAFARLLLHKPKWVFLDEATSALDE 548 (604)
T ss_pred HHHhCCCCCCCCChHHHHHHHHHcCcHHHHHHHhc-----cCcHhhhcChhHHHHHHHHHHHHcCCCEEEEecchhccCh
Confidence 999987644 789999999999999999998742 2224467999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCceEEEEecCchhhhccCEEEEEe
Q 001411 1007 ASENLIQEALDKLMEGRTTIMVAHRLSTIRNADKIAVLQ 1045 (1082)
Q Consensus 1007 ~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~~DrI~Vl~ 1045 (1082)
++|..+.+.+++...++|+|.|+||.....-.++.+-++
T Consensus 549 ~~e~~l~q~l~~~lp~~tvISV~Hr~tl~~~h~~~l~l~ 587 (604)
T COG4178 549 ETEDRLYQLLKEELPDATVISVGHRPTLWNFHSRQLELL 587 (604)
T ss_pred HHHHHHHHHHHhhCCCCEEEEeccchhhHHHHhhheeec
Confidence 999999999999999999999999988877777766554
|
|
| >TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-44 Score=400.53 Aligned_cols=215 Identities=34% Similarity=0.528 Sum_probs=184.6
Q ss_pred EEEEEEEEECCCC--CCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHHhCCCCCCcEEEECCeeCCCCCHHH---Hh
Q 001411 206 IEFSEVCFAYPSR--PHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKW---LR 280 (1082)
Q Consensus 206 i~~~~v~~~y~~~--~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~---~~ 280 (1082)
|+++|++++|++. ..++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++..++..+ +|
T Consensus 2 I~~~~lsk~y~~~~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~l~~~r 81 (343)
T TIGR02314 2 IKLSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKAR 81 (343)
T ss_pred EEEEEEEEEECCCCcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHh
Confidence 7899999999632 235999999999999999999999999999999999999999999999999998876544 57
Q ss_pred hhceEEccCCCcCh-hcHHHHHhcCCCC--CC----HHHHHHHHHHhchHHHHhcCCCCccccccCCCCCCChHHHHHHH
Q 001411 281 EQMGLVSQEPALFA-TSIANNILLGKED--AS----MDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIA 353 (1082)
Q Consensus 281 ~~i~~v~Q~~~l~~-~ti~~ni~~g~~~--~~----~~~~~~~~~~~~~~~~i~~lp~g~~t~~g~~g~~LSgGqkqri~ 353 (1082)
++|+|++|++.+|+ .|++||+.++... .+ .+++.+.++..++.+.. .....+|||||||||+
T Consensus 82 ~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~~~~-----------~~~~~~LSgGqkQRV~ 150 (343)
T TIGR02314 82 RQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLGDKH-----------DSYPSNLSGGQKQRVA 150 (343)
T ss_pred cCEEEEECCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhh-----------hCChhhCCHHHHHHHH
Confidence 78999999999996 5999999986421 11 22344455555444333 3445689999999999
Q ss_pred HHHhcccCCCeeEEeCcccCCCHHHHHHHHHHHHHHcC--CCeEEEEccCcccccc-CCEEEEEeCCEEEEecCchhhhh
Q 001411 354 IARAVLRNPKILLLDEATSALDAESELIVQRALEKIMS--NRTTIVVAHRLSTVRD-VDTIMVLKNGQVVESGTHVDLIS 430 (1082)
Q Consensus 354 lARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~ 430 (1082)
|||||+.+|++||||||||+||+.+...+.+.|+++.+ +.|+|+|||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 151 IARAL~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~~v~~~~d~v~vl~~G~iv~~g~~~~v~~ 230 (343)
T TIGR02314 151 IARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQGTVSEIFS 230 (343)
T ss_pred HHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHc
Confidence 99999999999999999999999999999999998854 7899999999999865 99999999999999999999876
Q ss_pred c
Q 001411 431 K 431 (1082)
Q Consensus 431 ~ 431 (1082)
.
T Consensus 231 ~ 231 (343)
T TIGR02314 231 H 231 (343)
T ss_pred C
Confidence 5
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. |
| >PRK14250 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-43 Score=383.05 Aligned_cols=225 Identities=36% Similarity=0.565 Sum_probs=192.2
Q ss_pred cEEEEeEEEECCCCCCcccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCccCCCCCHHHHhcce
Q 001411 834 NIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRKI 913 (1082)
Q Consensus 834 ~I~~~~Vs~~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR~~i 913 (1082)
.|+++|++++|+ +.++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++...+...+|+.+
T Consensus 3 ~l~~~~l~~~~~---~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i 79 (241)
T PRK14250 3 EIEFKEVSYSSF---GKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLRRKI 79 (241)
T ss_pred eEEEEeEEEEeC---CeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcChHHhhhcE
Confidence 489999999996 34699999999999999999999999999999999999999999999999999888888889999
Q ss_pred EEEcccCccccccHHHHhccCCCC--CCHHHHHHHHHHhcHHHHHhhCcccccccccCCCCCCChhHHHHHHHHHHHccC
Q 001411 914 GLVQQEPALFSTTIYENIKYGNED--ASEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKN 991 (1082)
Q Consensus 914 ~~VpQdp~Lf~gTIreNl~~~~~~--~~d~ei~~al~~a~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlaLARAlL~~ 991 (1082)
+|+||+|.+|+.|+++|+.++... ..++++.+.++..++.+ .........||||||||++||||++++
T Consensus 80 ~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~~LS~G~~qrl~la~al~~~ 149 (241)
T PRK14250 80 GMVFQQPHLFEGTVKDNIEYGPMLKGEKNVDVEYYLSIVGLNK----------EYATRDVKNLSGGEAQRVSIARTLANN 149 (241)
T ss_pred EEEecCchhchhhHHHHHhcchhhcCcHHHHHHHHHHHcCCCH----------HHhhCCcccCCHHHHHHHHHHHHHhcC
Confidence 999999999999999999864321 12334445555554421 112334567999999999999999999
Q ss_pred CCEEEeeCCCCCCCHHHHHHHHHHHHHhc--CCceEEEEecCchhhhc-cCEEEEEeCCEEEEecChHHHhhhccchHHH
Q 001411 992 PSILLLDEATSALDTASENLIQEALDKLM--EGRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGSHEQLLRKENGIYKQ 1068 (1082)
Q Consensus 992 ~~ILlLDEaTS~LD~~te~~I~~~l~~~~--~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~G~~~eLl~~~~g~f~~ 1068 (1082)
|++|||||||++||+.+.+.+.+.|++.. .++|+|+|||+++.+.. ||+|++|++|++++.|+++++...+...|.+
T Consensus 150 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~~~~~~ 229 (241)
T PRK14250 150 PEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHNMEQAKRIGDYTAFLNKGILVEYAKTYDFFTNPQNEVTK 229 (241)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHHhCCEEEEEeCCEEEEeCCHHHHhcCCCcHHHH
Confidence 99999999999999999999999999864 37899999999999875 9999999999999999999998754445655
Q ss_pred HHH
Q 001411 1069 LIR 1071 (1082)
Q Consensus 1069 l~~ 1071 (1082)
.+.
T Consensus 230 ~~~ 232 (241)
T PRK14250 230 LFI 232 (241)
T ss_pred HHH
Confidence 543
|
|
| >cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1) | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-43 Score=373.98 Aligned_cols=207 Identities=39% Similarity=0.627 Sum_probs=184.7
Q ss_pred ccccccEEEEeEEEECCCCCCcccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCccCCCCCHHH
Q 001411 829 TEIKGNIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRS 908 (1082)
Q Consensus 829 ~~~~g~I~~~~Vs~~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~ 908 (1082)
||..+.|+++|++++|+.. ..++|+|+||+|++||.+||+|+||||||||+++|+|+++|++|+|.+||.++...+...
T Consensus 1 ~~~~~~l~~~~l~~~~~~~-~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~ 79 (207)
T cd03369 1 WPEHGEIEVENLSVRYAPD-LPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLED 79 (207)
T ss_pred CCCCCeEEEEEEEEEeCCC-CcccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhHHCCHHH
Confidence 3456789999999999732 246999999999999999999999999999999999999999999999999998888888
Q ss_pred HhcceEEEcccCccccccHHHHhccCCCCCCHHHHHHHHHHhcHHHHHhhCcccccccccCCCCCCChhHHHHHHHHHHH
Q 001411 909 LRRKIGLVQQEPALFSTTIYENIKYGNEDASEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAI 988 (1082)
Q Consensus 909 lR~~i~~VpQdp~Lf~gTIreNl~~~~~~~~d~ei~~al~~a~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlaLARAl 988 (1082)
+|++++||||+|.+|++|+++|+.+.. ..+++++.++++ +......|||||+||++||||+
T Consensus 80 ~~~~i~~v~q~~~~~~~tv~~~l~~~~-~~~~~~~~~~l~------------------~~~~~~~LS~G~~qrv~laral 140 (207)
T cd03369 80 LRSSLTIIPQDPTLFSGTIRSNLDPFD-EYSDEEIYGALR------------------VSEGGLNLSQGQRQLLCLARAL 140 (207)
T ss_pred HHhhEEEEecCCcccCccHHHHhcccC-CCCHHHHHHHhh------------------ccCCCCcCCHHHHHHHHHHHHH
Confidence 999999999999999999999998643 334444444433 2345678999999999999999
Q ss_pred ccCCCEEEeeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhccCEEEEEeCCEEEEecCh
Q 001411 989 LKNPSILLLDEATSALDTASENLIQEALDKLMEGRTTIMVAHRLSTIRNADKIAVLQQGKVAEIGSH 1055 (1082)
Q Consensus 989 L~~~~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~~DrI~Vl~~G~ive~G~~ 1055 (1082)
+++|++|||||||++||+++.+.+.+.|++..+++|+|++||+++.+..||++++|++|++++.|+|
T Consensus 141 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~th~~~~~~~~d~v~~l~~g~i~~~g~~ 207 (207)
T cd03369 141 LKRPRVLVLDEATASIDYATDALIQKTIREEFTNSTILTIAHRLRTIIDYDKILVMDAGEVKEYDHP 207 (207)
T ss_pred hhCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCEEEecCCC
Confidence 9999999999999999999999999999998778999999999999988999999999999998875
|
NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. |
| >COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-44 Score=373.73 Aligned_cols=215 Identities=32% Similarity=0.505 Sum_probs=184.0
Q ss_pred cEEEEEEEEECCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHHhCCCCCCcEEEECCeeCCCCCH-HHHhhhc
Q 001411 205 QIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQL-KWLREQM 283 (1082)
Q Consensus 205 ~i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~-~~~~~~i 283 (1082)
.|.++|+++.|+.. .+++|||++|+.||.+|+.|||||||||||++|+|+..|++|+|.+||..+.+.+. ....++|
T Consensus 2 ~i~i~~~~~~~~~~--~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~~~~~~R~V 79 (345)
T COG1118 2 SIRINNVKKRFGAF--GALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLAVRDRKV 79 (345)
T ss_pred ceeehhhhhhcccc--cccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhccchhhcce
Confidence 47889999999854 49999999999999999999999999999999999999999999999994433322 3334679
Q ss_pred eEEccCCCcChh-cHHHHHhcCCC------CC--CHHHHHHHHHHhchHHHHhcCCCCccccccCCCCCCChHHHHHHHH
Q 001411 284 GLVSQEPALFAT-SIANNILLGKE------DA--SMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAI 354 (1082)
Q Consensus 284 ~~v~Q~~~l~~~-ti~~ni~~g~~------~~--~~~~~~~~~~~~~~~~~i~~lp~g~~t~~g~~g~~LSgGqkqri~l 354 (1082)
|||+|+..||.. ||+|||+||.+ .. ...++.+.++.+++...-++.| .+|||||||||||
T Consensus 80 GfvFQ~YALF~HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la~ryP-----------~QLSGGQrQRVAL 148 (345)
T COG1118 80 GFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLADRYP-----------AQLSGGQRQRVAL 148 (345)
T ss_pred eEEEechhhcccchHHhhhhhcccccccCCChhhHHHHHHHHHHHhcccchhhcCc-----------hhcChHHHHHHHH
Confidence 999999999976 99999999972 11 2345666677777666655655 4899999999999
Q ss_pred HHhcccCCCeeEEeCcccCCCHHHHHHHHHHHHHHcC--CCeEEEEccCccccc-cCCEEEEEeCCEEEEecCchhhhhc
Q 001411 355 ARAVLRNPKILLLDEATSALDAESELIVQRALEKIMS--NRTTIVVAHRLSTVR-DVDTIMVLKNGQVVESGTHVDLISK 431 (1082)
Q Consensus 355 ARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~vtH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~~ 431 (1082)
||||..+|++||||||+++||++..+.+.+.|+++.. +.|+++|||+.++.. .||||++|++|+|...|+++|+...
T Consensus 149 ARALA~eP~vLLLDEPf~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~eea~~ladrvvvl~~G~Ieqvg~p~ev~~~ 228 (345)
T COG1118 149 ARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQEEALELADRVVVLNQGRIEQVGPPDEVYDH 228 (345)
T ss_pred HHHhhcCCCeEeecCCchhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCHHHHHhhcceEEEecCCeeeeeCCHHHHhcC
Confidence 9999999999999999999999999999998888743 689999999999865 5999999999999999999999765
Q ss_pred C
Q 001411 432 G 432 (1082)
Q Consensus 432 ~ 432 (1082)
.
T Consensus 229 P 229 (345)
T COG1118 229 P 229 (345)
T ss_pred C
Confidence 3
|
|
| >COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-44 Score=393.70 Aligned_cols=221 Identities=35% Similarity=0.597 Sum_probs=198.9
Q ss_pred ccEEEEeEEEECCCCCCcccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCccCCCCCHHHHhcc
Q 001411 833 GNIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRK 912 (1082)
Q Consensus 833 g~I~~~~Vs~~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR~~ 912 (1082)
..|+++||+.+|. +..+++|+||+|++||.++++|||||||||++++|.||..|++|+|.+||.|+..++++ ++.
T Consensus 4 ~~l~i~~v~k~yg---~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp~--kR~ 78 (352)
T COG3842 4 PALEIRNVSKSFG---DFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPE--KRP 78 (352)
T ss_pred ceEEEEeeeeecC---CeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChh--hcc
Confidence 3599999999996 56799999999999999999999999999999999999999999999999999998876 578
Q ss_pred eEEEcccCccccc-cHHHHhccCCC---CCCH----HHHHHHHHHhcHHHHHhhCcccccccccCCCCCCChhHHHHHHH
Q 001411 913 IGLVQQEPALFST-TIYENIKYGNE---DASE----IELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAI 984 (1082)
Q Consensus 913 i~~VpQdp~Lf~g-TIreNl~~~~~---~~~d----~ei~~al~~a~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlaL 984 (1082)
|++|+|+..||+. ||++|+.||.. ...+ +.+.++++.+++.++-.+.| .+|||||+||+||
T Consensus 79 ig~VFQ~YALFPHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~~R~p-----------~qLSGGQqQRVAL 147 (352)
T COG3842 79 IGMVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFADRKP-----------HQLSGGQQQRVAL 147 (352)
T ss_pred cceeecCcccCCCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhhhhhCh-----------hhhChHHHHHHHH
Confidence 9999999999974 99999999854 1222 36778899999988877655 5799999999999
Q ss_pred HHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHhcC--CceEEEEecCchhhh-ccCEEEEEeCCEEEEecChHHHhhh
Q 001411 985 ARAILKNPSILLLDEATSALDTASENLIQEALDKLME--GRTTIMVAHRLSTIR-NADKIAVLQQGKVAEIGSHEQLLRK 1061 (1082)
Q Consensus 985 ARAlL~~~~ILlLDEaTS~LD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~-~~DrI~Vl~~G~ive~G~~~eLl~~ 1061 (1082)
||||..+|++||||||-|+||..-...++.-+++..+ |.|.|+|||+-+... -+|||+||++|+|...|+|+|+..+
T Consensus 148 ARAL~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqeEAl~msDrI~Vm~~G~I~Q~gtP~eiY~~ 227 (352)
T COG3842 148 ARALVPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQEEALAMSDRIAVMNDGRIEQVGTPEEIYER 227 (352)
T ss_pred HHHhhcCcchhhhcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhccceEEccCCceeecCCHHHHhhC
Confidence 9999999999999999999999999999999998753 889999999998875 5999999999999999999999988
Q ss_pred ccchHHHH
Q 001411 1062 ENGIYKQL 1069 (1082)
Q Consensus 1062 ~~g~f~~l 1069 (1082)
+...|-.-
T Consensus 228 P~~~fVA~ 235 (352)
T COG3842 228 PATRFVAD 235 (352)
T ss_pred cchHHHHH
Confidence 87766543
|
|
| >PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-43 Score=401.09 Aligned_cols=218 Identities=33% Similarity=0.565 Sum_probs=190.8
Q ss_pred cEEEEeEEEECCCCCCcccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCccCCCCCHHHHhcce
Q 001411 834 NIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRKI 913 (1082)
Q Consensus 834 ~I~~~~Vs~~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR~~i 913 (1082)
.|+++||+++|+ +.++|+|+||+|++||.++|+||||||||||+++|.|+++|++|+|.+||.++...++. +++|
T Consensus 6 ~l~~~~l~~~~~---~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~--~r~i 80 (351)
T PRK11432 6 FVVLKNITKRFG---SNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSIQ--QRDI 80 (351)
T ss_pred EEEEEeEEEEEC---CeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHH--HCCE
Confidence 599999999996 35699999999999999999999999999999999999999999999999999887653 6789
Q ss_pred EEEcccCccccc-cHHHHhccCCC--CCC----HHHHHHHHHHhcHHHHHhhCcccccccccCCCCCCChhHHHHHHHHH
Q 001411 914 GLVQQEPALFST-TIYENIKYGNE--DAS----EIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIAR 986 (1082)
Q Consensus 914 ~~VpQdp~Lf~g-TIreNl~~~~~--~~~----d~ei~~al~~a~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlaLAR 986 (1082)
+||+|++.+|+. |++||+.++.. ..+ ++++.++++..++.++..+. ...||||||||+||||
T Consensus 81 g~vfQ~~~lfp~~tv~eNi~~~l~~~~~~~~~~~~~v~~~l~~~gl~~~~~r~-----------~~~LSgGq~QRVaLAR 149 (351)
T PRK11432 81 CMVFQSYALFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELVDLAGFEDRY-----------VDQISGGQQQRVALAR 149 (351)
T ss_pred EEEeCCcccCCCCCHHHHHHHHHhHcCCCHHHHHHHHHHHHHHcCCchhhcCC-----------hhhCCHHHHHHHHHHH
Confidence 999999999975 99999998632 122 34566677777776554433 3579999999999999
Q ss_pred HHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHhcC--CceEEEEecCchhhhc-cCEEEEEeCCEEEEecChHHHhhhcc
Q 001411 987 AILKNPSILLLDEATSALDTASENLIQEALDKLME--GRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGSHEQLLRKEN 1063 (1082)
Q Consensus 987 AlL~~~~ILlLDEaTS~LD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~G~~~eLl~~~~ 1063 (1082)
||+++|+|||||||||+||+.+.+.+++.|++..+ ++|+|+|||+++.+.. ||||+||++|+|++.|+|+++.+++.
T Consensus 150 aL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~e~~~laD~i~vm~~G~i~~~g~~~~~~~~p~ 229 (351)
T PRK11432 150 ALILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQSEAFAVSDTVIVMNKGKIMQIGSPQELYRQPA 229 (351)
T ss_pred HHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCCC
Confidence 99999999999999999999999999999998754 7899999999999855 99999999999999999999987666
Q ss_pred chHH
Q 001411 1064 GIYK 1067 (1082)
Q Consensus 1064 g~f~ 1067 (1082)
..|.
T Consensus 230 ~~~~ 233 (351)
T PRK11432 230 SRFM 233 (351)
T ss_pred chHH
Confidence 5443
|
|
| >PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-43 Score=401.23 Aligned_cols=219 Identities=29% Similarity=0.500 Sum_probs=191.8
Q ss_pred cEEEEeEEEECCCCCCcccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCccCCCCCHHHHhcce
Q 001411 834 NIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRKI 913 (1082)
Q Consensus 834 ~I~~~~Vs~~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR~~i 913 (1082)
.|+++||+++|+. +.++|+|+||+|++||.++|+||||||||||+++|.|+.+|++|+|.+||.++.+++.. +++|
T Consensus 3 ~l~i~~l~~~~~~--~~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~--~r~i 78 (356)
T PRK11650 3 GLKLQAVRKSYDG--KTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEPA--DRDI 78 (356)
T ss_pred EEEEEeEEEEeCC--CCEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHH--HCCE
Confidence 3899999999941 34699999999999999999999999999999999999999999999999999887764 4789
Q ss_pred EEEcccCcccc-ccHHHHhccCCC--CCC----HHHHHHHHHHhcHHHHHhhCcccccccccCCCCCCChhHHHHHHHHH
Q 001411 914 GLVQQEPALFS-TTIYENIKYGNE--DAS----EIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIAR 986 (1082)
Q Consensus 914 ~~VpQdp~Lf~-gTIreNl~~~~~--~~~----d~ei~~al~~a~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlaLAR 986 (1082)
+||||++.+|+ .|+++|+.++.. ..+ .+.+.++++.+++.++..+.| .+||||||||+||||
T Consensus 79 g~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----------~~LSgGq~QRvalAR 147 (356)
T PRK11650 79 AMVFQNYALYPHMSVRENMAYGLKIRGMPKAEIEERVAEAARILELEPLLDRKP-----------RELSGGQRQRVAMGR 147 (356)
T ss_pred EEEeCCccccCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhHhhCCh-----------hhCCHHHHHHHHHHH
Confidence 99999999996 599999988642 122 234667778888877665544 579999999999999
Q ss_pred HHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHhcC--CceEEEEecCchhhhc-cCEEEEEeCCEEEEecChHHHhhhcc
Q 001411 987 AILKNPSILLLDEATSALDTASENLIQEALDKLME--GRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGSHEQLLRKEN 1063 (1082)
Q Consensus 987 AlL~~~~ILlLDEaTS~LD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~G~~~eLl~~~~ 1063 (1082)
||+++|++||||||||+||+.+.+.+.+.|++..+ +.|+|+|||+++.+.. ||+|++|++|++++.|+|+++.+++.
T Consensus 148 AL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~l~D~i~vl~~G~i~~~g~~~~~~~~p~ 227 (356)
T PRK11650 148 AIVREPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQVEAMTLADRVVVMNGGVAEQIGTPVEVYEKPA 227 (356)
T ss_pred HHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEECCHHHHHhCCc
Confidence 99999999999999999999999999999998754 7899999999998854 99999999999999999999988665
Q ss_pred chHH
Q 001411 1064 GIYK 1067 (1082)
Q Consensus 1064 g~f~ 1067 (1082)
..|.
T Consensus 228 ~~~~ 231 (356)
T PRK11650 228 STFV 231 (356)
T ss_pred cHHH
Confidence 5453
|
|
| >PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-43 Score=390.95 Aligned_cols=217 Identities=31% Similarity=0.542 Sum_probs=190.4
Q ss_pred cEEEEeEEEECCCCCCcccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCccCCCCCHHHHhcce
Q 001411 834 NIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRKI 913 (1082)
Q Consensus 834 ~I~~~~Vs~~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR~~i 913 (1082)
.|+++||+++|+.....++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++.+.+...+|+++
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i 83 (279)
T PRK13650 4 IIEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIRHKI 83 (279)
T ss_pred eEEEEeEEEEcCCCCcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHHhhc
Confidence 48999999999632224699999999999999999999999999999999999999999999999999888888899999
Q ss_pred EEEcccC--ccccccHHHHhccCCCC--CC----HHHHHHHHHHhcHHHHHhhCcccccccccCCCCCCChhHHHHHHHH
Q 001411 914 GLVQQEP--ALFSTTIYENIKYGNED--AS----EIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIA 985 (1082)
Q Consensus 914 ~~VpQdp--~Lf~gTIreNl~~~~~~--~~----d~ei~~al~~a~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlaLA 985 (1082)
+||+|+| .++..|+++||.++... .+ ++.+.++++.+++.++..+. ..+||||||||++||
T Consensus 84 ~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~-----------~~~LSgGq~qrv~lA 152 (279)
T PRK13650 84 GMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKERVNEALELVGMQDFKERE-----------PARLSGGQKQRVAIA 152 (279)
T ss_pred eEEEcChHHhcccccHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCCHhHhhCC-----------cccCCHHHHHHHHHH
Confidence 9999998 36678999999875321 22 24466777777776655443 357999999999999
Q ss_pred HHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHhcC--CceEEEEecCchhhhccCEEEEEeCCEEEEecChHHHhhh
Q 001411 986 RAILKNPSILLLDEATSALDTASENLIQEALDKLME--GRTTIMVAHRLSTIRNADKIAVLQQGKVAEIGSHEQLLRK 1061 (1082)
Q Consensus 986 RAlL~~~~ILlLDEaTS~LD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~~~DrI~Vl~~G~ive~G~~~eLl~~ 1061 (1082)
|||+++|++|||||||++||+.+.+.+.+.|++..+ ++|+|+|||+++.+..||||++|++|++++.|+++++.+.
T Consensus 153 ral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~ 230 (279)
T PRK13650 153 GAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLDEVALSDRVLVMKNGQVESTSTPRELFSR 230 (279)
T ss_pred HHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEEECCHHHHHcC
Confidence 999999999999999999999999999999998753 7999999999999978999999999999999999998763
|
|
| >COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-43 Score=364.75 Aligned_cols=197 Identities=36% Similarity=0.574 Sum_probs=175.1
Q ss_pred cEEEEeEEEECCCCCCcccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCccCCCCCHHHHhcce
Q 001411 834 NIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRKI 913 (1082)
Q Consensus 834 ~I~~~~Vs~~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR~~i 913 (1082)
.+++++|+++|+ ...||+|+||+|++||.|+|+||||||||||++++.|+.+|++|+|.++|.++... ...+
T Consensus 3 ~l~i~~v~~~f~---~~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p-----~~~~ 74 (248)
T COG1116 3 LLEIEGVSKSFG---GVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGP-----GPDI 74 (248)
T ss_pred eEEEEeeEEEeC---ceEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCC-----CCCE
Confidence 489999999997 36799999999999999999999999999999999999999999999999988543 4579
Q ss_pred EEEcccCcccc-ccHHHHhccCCCCC------CHHHHHHHHHHhcHHHHHhhCcccccccccCCCCCCChhHHHHHHHHH
Q 001411 914 GLVQQEPALFS-TTIYENIKYGNEDA------SEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIAR 986 (1082)
Q Consensus 914 ~~VpQdp~Lf~-gTIreNl~~~~~~~------~d~ei~~al~~a~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlaLAR 986 (1082)
+||+|++.||+ -|+++|+.++.... ..+...+.++.+|+.+|-++.| .+||||||||+||||
T Consensus 75 ~~vFQ~~~LlPW~Tv~~NV~l~l~~~~~~~~e~~~~a~~~L~~VgL~~~~~~~P-----------~qLSGGMrQRVaiAR 143 (248)
T COG1116 75 GYVFQEDALLPWLTVLDNVALGLELRGKSKAEARERAKELLELVGLAGFEDKYP-----------HQLSGGMRQRVAIAR 143 (248)
T ss_pred EEEeccCcccchhhHHhhheehhhccccchHhHHHHHHHHHHHcCCcchhhcCc-----------cccChHHHHHHHHHH
Confidence 99999999999 49999999875421 2345777888899888877766 689999999999999
Q ss_pred HHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHhc--CCceEEEEecCchhhhc-cCEEEEEeC--CEE
Q 001411 987 AILKNPSILLLDEATSALDTASENLIQEALDKLM--EGRTTIMVAHRLSTIRN-ADKIAVLQQ--GKV 1049 (1082)
Q Consensus 987 AlL~~~~ILlLDEaTS~LD~~te~~I~~~l~~~~--~~~TvI~IaHrl~ti~~-~DrI~Vl~~--G~i 1049 (1082)
||+.+|+||+||||.++||+.|...+|+-+.+.. .++||++|||++++... +|||+||.+ |+|
T Consensus 144 AL~~~P~lLLlDEPFgALDalTR~~lq~~l~~lw~~~~~TvllVTHdi~EAv~LsdRivvl~~~P~~i 211 (248)
T COG1116 144 ALATRPKLLLLDEPFGALDALTREELQDELLRLWEETRKTVLLVTHDVDEAVYLADRVVVLSNRPGRI 211 (248)
T ss_pred HHhcCCCEEEEcCCcchhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHhhhCEEEEecCCCcce
Confidence 9999999999999999999999999999998865 36899999999999754 999999999 555
|
|
| >COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-40 Score=352.52 Aligned_cols=476 Identities=20% Similarity=0.258 Sum_probs=346.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccccccCCChhHHHHHHHhhHHHHHHHHHHHHH
Q 001411 555 VALIFVGLAVVTIPVYLLQHYFYTLMGEHLTARVRLSMFSAILSNEIGWFDLDENNTGLLISTLAADATLVRSALADRLS 634 (1082)
Q Consensus 555 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~l~~~~~ffd~~~~~~G~il~r~s~D~~~i~~~~~~~l~ 634 (1082)
++..|.++..+..+...+.......++.+...++|.++.++++..|+.-++. -.+++++.++++|+..|. +-...++
T Consensus 50 ~l~~f~~llllf~~ss~is~lg~t~~gq~~I~klr~~~~~kil~tplerier--~~~~rlla~L~~Dvr~IS-f~~s~lp 126 (546)
T COG4615 50 VLPEFLGLLLLFMVSSLISQLGLTTLGQHFIYKLRSEFIKKILDTPLERIER--LGSARLLAGLTSDVRNIS-FAFSRLP 126 (546)
T ss_pred eHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH--hcccchhhhhccccccee-ehHhhhH
Confidence 3444555555666666677778888999999999999999999999999875 789999999999999998 5556777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHccHHHHHHcCcHH
Q 001411 635 IIVQNVALTVTAFVIAFILSWRLAAVVAASLPLLIGAFVAEQLFLKGFGGDYNRAYSRATSVAREAIANIRTVAAYGIEK 714 (1082)
Q Consensus 635 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~tIra~~~~~ 714 (1082)
.+.+..+.++++.....+.++++.++..+.+.+.++.-++......+..+..++...+...+.+..++|.+.++...-..
T Consensus 127 ~~~qa~il~l~s~aYLayLSp~mf~l~vV~ivv~~~~~~~~m~rv~k~~~aare~ed~Lq~~y~~il~G~KEL~l~r~R~ 206 (546)
T COG4615 127 ELVQAIILTLGSAAYLAYLSPKMFLLTVVWIVVTIWGGFVLMARVYKHMAAARETEDKLQNDYQTILEGRKELTLNRERA 206 (546)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcchhhheechHHH
Confidence 88899999999999999999888766666555555554444444334445666777888899999999999988765322
Q ss_pred H--HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 001411 715 R--ISIQFASELSQPNKQALLRGHISGFGYGVSQLLSLCSYALGLWYASVLIKQKGSNFGDIMKSFMVLIITALAVAETL 792 (1082)
Q Consensus 715 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 792 (1082)
+ +.+.+...-....+..............+++.+.+....+.+|+.... +.-+........+.+.+...++.+..
T Consensus 207 ~~~h~~~~~~~a~~~r~~~~~~n~f~~la~~~~ni~l~~lIGlvf~lal~~---~w~st~~a~tivlvlLflr~pL~s~v 283 (546)
T COG4615 207 EYVHNNLYIPDAQEYRHHIIRANTFHLLAVNWSNIMLLGLIGLVFWLALSL---GWASTNVAATIVLVLLFLRTPLLSAV 283 (546)
T ss_pred HHHHhhhcCcchHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh---ccchhhHHHHHHHHHHHHhhHHHHHH
Confidence 2 122222111111111111111111112233334444444445554433 22222333333344556667888888
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccccCCCCCCCCcccccccccEEEEeEEEECCCCCCcccccceeEEeeCCcEEEEEcCC
Q 001411 793 ALAPDIVKGSQALGPVFGILYRKTAIQPDDPASKEVTEIKGNIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQS 872 (1082)
Q Consensus 793 ~~~~~~~~~~~a~~ri~~~~~~~~~~~~~~~~~~~~~~~~g~I~~~~Vs~~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~s 872 (1082)
...|.+..+..|..++..+...++..+-..+. ..|.-..|+++||.|+|+. ..--+..||++|++||.|-|+|.|
T Consensus 284 gilP~l~~AqvA~~kiakle~~~~~a~~~~~q---~~p~~~~lelrnvrfay~~--~~FhvgPiNl~ikrGelvFliG~N 358 (546)
T COG4615 284 GILPTLLTAQVAFNKIAKLELAPYKADFPRPQ---AFPDWKTLELRNVRFAYQD--NAFHVGPINLTIKRGELVFLIGGN 358 (546)
T ss_pred hhhhHHHHHHHHHHHHHHhhcCCccccCCCCC---cCCcccceeeeeeeeccCc--ccceecceeeEEecCcEEEEECCC
Confidence 88999999999999998875533322211111 1122346999999999973 224578899999999999999999
Q ss_pred CCCHHHHHHHHhccccCCccEEEECCccCCCCCHHHHhcceEEEcccCccccccHHHHhccCCCCCCHHHHHHHHHHhcH
Q 001411 873 GSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRKIGLVQQEPALFSTTIYENIKYGNEDASEIELMKATKAANA 952 (1082)
Q Consensus 873 GSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR~~i~~VpQdp~Lf~gTIreNl~~~~~~~~d~ei~~al~~a~l 952 (1082)
||||||++++|.|+|.|++|+|++||.+++.-+++++|+-++-|+-|-+||+.++- + ...++.+.+..-+++..+
T Consensus 359 GsGKST~~~LLtGL~~PqsG~I~ldg~pV~~e~ledYR~LfSavFsDyhLF~~ll~----~-e~~as~q~i~~~LqrLel 433 (546)
T COG4615 359 GSGKSTLAMLLTGLYQPQSGEILLDGKPVSAEQLEDYRKLFSAVFSDYHLFDQLLG----P-EGKASPQLIEKWLQRLEL 433 (546)
T ss_pred CCcHHHHHHHHhcccCCCCCceeECCccCCCCCHHHHHHHHHHHhhhHhhhHhhhC----C-ccCCChHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999997651 1 122677777666666555
Q ss_pred HHHHhhCcccccccccCCCCCCChhHHHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHhc--CCceEEEEec
Q 001411 953 HGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLM--EGRTTIMVAH 1030 (1082)
Q Consensus 953 ~~~i~~lp~gldt~v~e~G~~LSgGQrQrlaLARAlL~~~~ILlLDEaTS~LD~~te~~I~~~l~~~~--~~~TvI~IaH 1030 (1082)
..... +.+| ... ...||-|||.|+|+--|++-+.+|+++||=-+--||.=++...+.+-... .|+|++.|||
T Consensus 434 ~~kts-l~d~---~fs--~~kLStGQkKRlAll~AllEeR~Ilv~DEWAADQDPaFRR~FY~~lLp~LK~qGKTI~aIsH 507 (546)
T COG4615 434 AHKTS-LNDG---RFS--NLKLSTGQKKRLALLLALLEERDILVLDEWAADQDPAFRREFYQVLLPLLKEQGKTIFAISH 507 (546)
T ss_pred hhhhc-ccCC---ccc--ccccccchHHHHHHHHHHHhhCCeEEeehhhccCChHHHHHHHHHHhHHHHHhCCeEEEEec
Confidence 44322 1111 111 24699999999999999999999999999999999999999888876544 4999999999
Q ss_pred CchhhhccCEEEEEeCCEEEEe
Q 001411 1031 RLSTIRNADKIAVLQQGKVAEI 1052 (1082)
Q Consensus 1031 rl~ti~~~DrI~Vl~~G~ive~ 1052 (1082)
+-.--..|||++.|++|+++|.
T Consensus 508 Dd~YF~~ADrll~~~~G~~~e~ 529 (546)
T COG4615 508 DDHYFIHADRLLEMRNGQLSEL 529 (546)
T ss_pred CchhhhhHHHHHHHhcCceeec
Confidence 9999999999999999999985
|
|
| >PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-43 Score=399.16 Aligned_cols=222 Identities=36% Similarity=0.570 Sum_probs=187.5
Q ss_pred EEEEeEEEECCCCC-CcccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCccCCCCCHHH---Hh
Q 001411 835 IELRNVSFKYPVRP-DITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRS---LR 910 (1082)
Q Consensus 835 I~~~~Vs~~Y~~~~-~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~---lR 910 (1082)
|+++||+++|+... +.++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++..++... +|
T Consensus 2 i~i~~l~~~y~~~~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~ 81 (343)
T PRK11153 2 IELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRKAR 81 (343)
T ss_pred EEEEeEEEEeCCCCCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHh
Confidence 78999999996211 357999999999999999999999999999999999999999999999999999887654 57
Q ss_pred cceEEEcccCcccc-ccHHHHhccCCC--CCCH----HHHHHHHHHhcHHHHHhhCcccccccccCCCCCCChhHHHHHH
Q 001411 911 RKIGLVQQEPALFS-TTIYENIKYGNE--DASE----IELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVA 983 (1082)
Q Consensus 911 ~~i~~VpQdp~Lf~-gTIreNl~~~~~--~~~d----~ei~~al~~a~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrla 983 (1082)
++|+||||++.+|. .|+++|+.++.. ..+. +++.+.++..++.++ ......+||||||||++
T Consensus 82 ~~ig~v~q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~-----------~~~~~~~LSgGq~qRv~ 150 (343)
T PRK11153 82 RQIGMIFQHFNLLSSRTVFDNVALPLELAGTPKAEIKARVTELLELVGLSDK-----------ADRYPAQLSGGQKQRVA 150 (343)
T ss_pred cCEEEEeCCCccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchh-----------hhCChhhCCHHHHHHHH
Confidence 89999999999986 699999986421 1222 234444555544433 33344679999999999
Q ss_pred HHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHhcC--CceEEEEecCchhhhc-cCEEEEEeCCEEEEecChHHHhh
Q 001411 984 IARAILKNPSILLLDEATSALDTASENLIQEALDKLME--GRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGSHEQLLR 1060 (1082)
Q Consensus 984 LARAlL~~~~ILlLDEaTS~LD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~G~~~eLl~ 1060 (1082)
|||||+++|+||||||||++||+.+.+.+.+.|++..+ ++|+|+|||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 151 lAraL~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~~i~~~~d~v~~l~~G~i~~~g~~~~~~~ 230 (343)
T PRK11153 151 IARALASNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMDVVKRICDRVAVIDAGRLVEQGTVSEVFS 230 (343)
T ss_pred HHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 99999999999999999999999999999999998753 7899999999999876 99999999999999999999986
Q ss_pred hccchHH
Q 001411 1061 KENGIYK 1067 (1082)
Q Consensus 1061 ~~~g~f~ 1067 (1082)
.+...+.
T Consensus 231 ~~~~~~~ 237 (343)
T PRK11153 231 HPKHPLT 237 (343)
T ss_pred CCCcHHH
Confidence 5444343
|
|
| >TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-43 Score=398.89 Aligned_cols=218 Identities=31% Similarity=0.514 Sum_probs=188.5
Q ss_pred cEEEEeEEEECCCCCCcccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCccCCCCCHHHHhcce
Q 001411 834 NIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRKI 913 (1082)
Q Consensus 834 ~I~~~~Vs~~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR~~i 913 (1082)
.|+++||+++|+ +.++|+|+||+|++||+++|+||||||||||+++|.|+.+|++|+|.+||.++.+.++. ++.+
T Consensus 4 ~l~~~~l~~~~~---~~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~--~r~i 78 (353)
T TIGR03265 4 YLSIDNIRKRFG---AFTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQ--KRDY 78 (353)
T ss_pred EEEEEEEEEEeC---CeEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHH--HCCE
Confidence 489999999996 34689999999999999999999999999999999999999999999999999887764 6789
Q ss_pred EEEcccCcccc-ccHHHHhccCCCC--CC----HHHHHHHHHHhcHHHHHhhCcccccccccCCCCCCChhHHHHHHHHH
Q 001411 914 GLVQQEPALFS-TTIYENIKYGNED--AS----EIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIAR 986 (1082)
Q Consensus 914 ~~VpQdp~Lf~-gTIreNl~~~~~~--~~----d~ei~~al~~a~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlaLAR 986 (1082)
+||+|++.+|+ .|+++|+.++... .+ ++.+.++++..++.++. .....+||||||||+||||
T Consensus 79 g~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~l~L~~~~-----------~~~~~~LSgGq~QRvaLAR 147 (353)
T TIGR03265 79 GIVFQSYALFPNLTVADNIAYGLKNRGMGRAEVAERVAELLDLVGLPGSE-----------RKYPGQLSGGQQQRVALAR 147 (353)
T ss_pred EEEeCCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCchh-----------hCChhhCCHHHHHHHHHHH
Confidence 99999999996 6999999976321 12 23344555555554443 3445689999999999999
Q ss_pred HHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHhcC--CceEEEEecCchhhhc-cCEEEEEeCCEEEEecChHHHhhhcc
Q 001411 987 AILKNPSILLLDEATSALDTASENLIQEALDKLME--GRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGSHEQLLRKEN 1063 (1082)
Q Consensus 987 AlL~~~~ILlLDEaTS~LD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~G~~~eLl~~~~ 1063 (1082)
||+++|++||||||||+||..+.+.+++.|++..+ +.|+|+|||+++.+.. ||||+||++|+++++|+|+++.+++.
T Consensus 148 aL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~ea~~l~d~i~vl~~G~i~~~g~~~~~~~~p~ 227 (353)
T TIGR03265 148 ALATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQEEALSMADRIVVMNHGVIEQVGTPQEIYRHPA 227 (353)
T ss_pred HHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCCC
Confidence 99999999999999999999999999999998754 7899999999999855 99999999999999999999998766
Q ss_pred chHH
Q 001411 1064 GIYK 1067 (1082)
Q Consensus 1064 g~f~ 1067 (1082)
..|.
T Consensus 228 ~~~~ 231 (353)
T TIGR03265 228 TPFV 231 (353)
T ss_pred CHHH
Confidence 5553
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely. |
| >PRK14273 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-43 Score=382.83 Aligned_cols=224 Identities=33% Similarity=0.527 Sum_probs=190.3
Q ss_pred cEEEEeEEEECCCCCCcccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccC-----CccEEEECCccCCC--CCH
Q 001411 834 NIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDP-----ISGTVLIDGYDIRT--LNL 906 (1082)
Q Consensus 834 ~I~~~~Vs~~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p-----~~G~I~idG~di~~--i~~ 906 (1082)
.|+++|++++|+ +.++|+|+||+|++||++||+|+||||||||+++|.|+++| ++|+|.+||.++.. .+.
T Consensus 7 ~l~~~~l~~~~~---~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 83 (254)
T PRK14273 7 IIETENLNLFYT---DFKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFDI 83 (254)
T ss_pred eEEEeeeEEEeC---CceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecccccccH
Confidence 599999999996 34699999999999999999999999999999999999997 48999999998853 345
Q ss_pred HHHhcceEEEcccCccccccHHHHhccCCCC---CC----HHHHHHHHHHhcHHHHHhhCcccccccccCCCCCCChhHH
Q 001411 907 RSLRRKIGLVQQEPALFSTTIYENIKYGNED---AS----EIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQK 979 (1082)
Q Consensus 907 ~~lR~~i~~VpQdp~Lf~gTIreNl~~~~~~---~~----d~ei~~al~~a~l~~~i~~lp~gldt~v~e~G~~LSgGQr 979 (1082)
..+|++++|+||++.+|+.|+++|+.++... .+ ++.+.++++.+++.+.+ ++.+++ ...+||||||
T Consensus 84 ~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l---~~~~~~----~~~~LSgG~~ 156 (254)
T PRK14273 84 LELRRKIGMVFQTPNPFLMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEV---KDKLNT----NALSLSGGQQ 156 (254)
T ss_pred HHHhhceEEEeeccccccCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhh---HHHHhC----CcccCCHHHH
Confidence 6788999999999999999999999864211 11 23455666666664333 233444 4567999999
Q ss_pred HHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhc-cCEEEEEeCCEEEEecChHHH
Q 001411 980 QRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLMEGRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGSHEQL 1058 (1082)
Q Consensus 980 QrlaLARAlL~~~~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~G~~~eL 1058 (1082)
||++|||||+++|++|||||||++||+.+.+.+.+.|++..+++|+|+|||+++.+.. ||||++|++|++++.|+++++
T Consensus 157 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 236 (254)
T PRK14273 157 QRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLKESYTIIIVTHNMQQAGRISDRTAFFLNGCIEEESSTDEL 236 (254)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999998767899999999999865 999999999999999999999
Q ss_pred hhhccchHH
Q 001411 1059 LRKENGIYK 1067 (1082)
Q Consensus 1059 l~~~~g~f~ 1067 (1082)
.+++...|.
T Consensus 237 ~~~~~~~~~ 245 (254)
T PRK14273 237 FFNPKNTKT 245 (254)
T ss_pred HhCCCChHH
Confidence 865544443
|
|
| >PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-43 Score=386.26 Aligned_cols=213 Identities=32% Similarity=0.554 Sum_probs=187.6
Q ss_pred cEEEEeEEEECCCCCCcccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCccCCCCCHHHHhcce
Q 001411 834 NIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRKI 913 (1082)
Q Consensus 834 ~I~~~~Vs~~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR~~i 913 (1082)
.|+++||+++|+. ..++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.+.+...+|+++
T Consensus 4 ~l~~~~l~~~~~~--~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i 81 (274)
T PRK13647 4 IIEVEDLHFRYKD--GTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRSKV 81 (274)
T ss_pred eEEEEEEEEEeCC--CCeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHhhE
Confidence 4899999999962 34699999999999999999999999999999999999999999999999999988888889999
Q ss_pred EEEcccC--ccccccHHHHhccCCC--CCC----HHHHHHHHHHhcHHHHHhhCcccccccccCCCCCCChhHHHHHHHH
Q 001411 914 GLVQQEP--ALFSTTIYENIKYGNE--DAS----EIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIA 985 (1082)
Q Consensus 914 ~~VpQdp--~Lf~gTIreNl~~~~~--~~~----d~ei~~al~~a~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlaLA 985 (1082)
+||||+| .+|..|+++|+.++.. ..+ ++++.++++.+++.++..+.| ..||||||||++||
T Consensus 82 ~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----------~~LSgG~~qrv~la 150 (274)
T PRK13647 82 GLVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMWDFRDKPP-----------YHLSYGQKKRVAIA 150 (274)
T ss_pred EEEecChhhhhccCcHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCCh-----------hhCCHHHHHHHHHH
Confidence 9999998 6888999999987521 122 234667777777766554433 47999999999999
Q ss_pred HHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEecCchhhh-ccCEEEEEeCCEEEEecChHHHh
Q 001411 986 RAILKNPSILLLDEATSALDTASENLIQEALDKLM-EGRTTIMVAHRLSTIR-NADKIAVLQQGKVAEIGSHEQLL 1059 (1082)
Q Consensus 986 RAlL~~~~ILlLDEaTS~LD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~-~~DrI~Vl~~G~ive~G~~~eLl 1059 (1082)
|||+++|++|||||||++||+.+...+.+.|++.. +++|+|++||+++.+. .||||++|++|++++.|+++++.
T Consensus 151 raL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 226 (274)
T PRK13647 151 GVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVDLAAEWADQVIVLKEGRVLAEGDKSLLT 226 (274)
T ss_pred HHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHhc
Confidence 99999999999999999999999999999999875 4789999999999985 59999999999999999997654
|
|
| >TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-43 Score=397.35 Aligned_cols=208 Identities=33% Similarity=0.544 Sum_probs=181.5
Q ss_pred CcccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCccCCCCCHHHH----hcceEEEcccCcccc
Q 001411 849 DITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSL----RRKIGLVQQEPALFS 924 (1082)
Q Consensus 849 ~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~l----R~~i~~VpQdp~Lf~ 924 (1082)
+.++|+|+||+|++||.++|+|+||||||||+++|.|+++|++|+|.|||.++...+...+ |++++||||++.+|+
T Consensus 5 ~~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l~~ 84 (363)
T TIGR01186 5 GKKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFALFP 84 (363)
T ss_pred CceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCcCCC
Confidence 3469999999999999999999999999999999999999999999999999999998887 789999999999997
Q ss_pred -ccHHHHhccCCC--CCC----HHHHHHHHHHhcHHHHHhhCcccccccccCCCCCCChhHHHHHHHHHHHccCCCEEEe
Q 001411 925 -TTIYENIKYGNE--DAS----EIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLL 997 (1082)
Q Consensus 925 -gTIreNl~~~~~--~~~----d~ei~~al~~a~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlaLARAlL~~~~ILlL 997 (1082)
.|+++|+.++.. ..+ .+.+.++++.+++.++..+ ...+||||||||++|||||+++|+||||
T Consensus 85 ~~TV~eNi~~~~~~~~~~~~~~~~~~~~~l~~vgL~~~~~~-----------~p~~LSGGq~QRV~lARAL~~~p~iLLl 153 (363)
T TIGR01186 85 HMTILQNTSLGPELLGWPEQERKEKALELLKLVGLEEYEHR-----------YPDELSGGMQQRVGLARALAAEPDILLM 153 (363)
T ss_pred CCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCchhhhC-----------ChhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 599999987532 112 2445666777776655444 3457999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHhc--CCceEEEEecCchhhh-ccCEEEEEeCCEEEEecChHHHhhhccchHH
Q 001411 998 DEATSALDTASENLIQEALDKLM--EGRTTIMVAHRLSTIR-NADKIAVLQQGKVAEIGSHEQLLRKENGIYK 1067 (1082)
Q Consensus 998 DEaTS~LD~~te~~I~~~l~~~~--~~~TvI~IaHrl~ti~-~~DrI~Vl~~G~ive~G~~~eLl~~~~g~f~ 1067 (1082)
|||||+||+.+.+.+++.+.+.. .++|+|+|||+++.+. .||||++|++|++++.|+|+++++++...|.
T Consensus 154 DEP~saLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~ea~~~~drI~vl~~G~iv~~g~~~ei~~~p~~~~~ 226 (363)
T TIGR01186 154 DEAFSALDPLIRDSMQDELKKLQATLQKTIVFITHDLDEAIRIGDRIVIMKAGEIVQVGTPDEILRNPANEYV 226 (363)
T ss_pred eCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEeeCCHHHHHhCcccHHH
Confidence 99999999999999999999874 3799999999999875 4999999999999999999999876544443
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact |
| >cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-43 Score=380.75 Aligned_cols=214 Identities=33% Similarity=0.550 Sum_probs=180.9
Q ss_pred EEEEEEEEECCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHHhCCCCCCcEEEECCeeCCCCCH---HHHhhh
Q 001411 206 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQL---KWLREQ 282 (1082)
Q Consensus 206 i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~---~~~~~~ 282 (1082)
++++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. ..+++.
T Consensus 1 l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~~ 78 (235)
T cd03261 1 IELRGLTKSFGG--RTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLRRR 78 (235)
T ss_pred CeEEEEEEEECC--EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChhhHHHHhcc
Confidence 468999999974 349999999999999999999999999999999999999999999999999877654 567888
Q ss_pred ceEEccCCCcChh-cHHHHHhcCCC---CCCHH----HHHHHHHHhchHHHHhcCCCCccccccCCCCCCChHHHHHHHH
Q 001411 283 MGLVSQEPALFAT-SIANNILLGKE---DASMD----RVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAI 354 (1082)
Q Consensus 283 i~~v~Q~~~l~~~-ti~~ni~~g~~---~~~~~----~~~~~~~~~~~~~~i~~lp~g~~t~~g~~g~~LSgGqkqri~l 354 (1082)
|+|++|++.+|+. |++||+.++.. ..+.+ ++.++++.. |+.........+||||||||++|
T Consensus 79 i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~~~LSgG~~qrv~i 147 (235)
T cd03261 79 MGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIVLEKLEAV-----------GLRGAEDLYPAELSGGMKKRVAL 147 (235)
T ss_pred eEEEccCcccCCCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHc-----------CCchhhcCChhhCCHHHHHHHHH
Confidence 9999999999986 99999987632 11222 223333333 33333344556899999999999
Q ss_pred HHhcccCCCeeEEeCcccCCCHHHHHHHHHHHHHHcC--CCeEEEEccCcccccc-CCEEEEEeCCEEEEecCchhhhhc
Q 001411 355 ARAVLRNPKILLLDEATSALDAESELIVQRALEKIMS--NRTTIVVAHRLSTVRD-VDTIMVLKNGQVVESGTHVDLISK 431 (1082)
Q Consensus 355 ARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 431 (1082)
||||+.+|+++||||||++||+.+...+.+.|+++.+ ++|+|+|||+++.+.. ||+|++|++|++++.|+++++...
T Consensus 148 a~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 227 (235)
T cd03261 148 ARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGTPEELRAS 227 (235)
T ss_pred HHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhcCEEEEEECCeEEEecCHHHHcCC
Confidence 9999999999999999999999999999999998753 7899999999998765 999999999999999999887654
Q ss_pred C
Q 001411 432 G 432 (1082)
Q Consensus 432 ~ 432 (1082)
.
T Consensus 228 ~ 228 (235)
T cd03261 228 D 228 (235)
T ss_pred C
Confidence 3
|
The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK10744 pstB phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-43 Score=382.64 Aligned_cols=222 Identities=34% Similarity=0.568 Sum_probs=190.4
Q ss_pred cccEEEEeEEEECCCCCCcccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccc-----CCccEEEECCccCCC--C
Q 001411 832 KGNIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYD-----PISGTVLIDGYDIRT--L 904 (1082)
Q Consensus 832 ~g~I~~~~Vs~~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~-----p~~G~I~idG~di~~--i 904 (1082)
.+.|+++|++++|+ +.++|+|+||+|++||++||+|+||||||||+++|.|+++ |++|+|.+||.++.. .
T Consensus 11 ~~~l~~~~l~~~~~---~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~ 87 (260)
T PRK10744 11 PSKIQVRNLNFYYG---KFHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQ 87 (260)
T ss_pred CceEEEEEEEEEeC---CeEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEcccccc
Confidence 45799999999996 3469999999999999999999999999999999999986 579999999999863 4
Q ss_pred CHHHHhcceEEEcccCccccccHHHHhccCCC---CCC----HHHHHHHHHHhcHHHHHhhCcccccccccCCCCCCChh
Q 001411 905 NLRSLRRKIGLVQQEPALFSTTIYENIKYGNE---DAS----EIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGG 977 (1082)
Q Consensus 905 ~~~~lR~~i~~VpQdp~Lf~gTIreNl~~~~~---~~~----d~ei~~al~~a~l~~~i~~lp~gldt~v~e~G~~LSgG 977 (1082)
+...+|++++|+||+|.+|+.|+++|+.++.. ..+ +++++++++.+++.+.+. ........+||||
T Consensus 88 ~~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~G 160 (260)
T PRK10744 88 DIALLRAKVGMVFQKPTPFPMSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEVK-------DKLHQSGYSLSGG 160 (260)
T ss_pred chHHHhcceEEEecCCccCcCcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChhhH-------HHHhcCCCCCCHH
Confidence 56678999999999999999999999986422 122 234566667666543322 2344556789999
Q ss_pred HHHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhc-cCEEEEEeCCEEEEecChH
Q 001411 978 QKQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLMEGRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGSHE 1056 (1082)
Q Consensus 978 QrQrlaLARAlL~~~~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~G~~~ 1056 (1082)
||||++|||||+++|+||||||||++||+.+.+.+.+.|++..+++|+|+|||+++.+.. ||+|++|++|++++.|+++
T Consensus 161 q~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~ 240 (260)
T PRK10744 161 QQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELKQDYTVVIVTHNMQQAARCSDYTAFMYLGELIEFGNTD 240 (260)
T ss_pred HHHHHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 999999999999999999999999999999999999999988667899999999999865 9999999999999999999
Q ss_pred HHhhhcc
Q 001411 1057 QLLRKEN 1063 (1082)
Q Consensus 1057 eLl~~~~ 1063 (1082)
++...+.
T Consensus 241 ~~~~~~~ 247 (260)
T PRK10744 241 TIFTKPA 247 (260)
T ss_pred HHHhCCC
Confidence 9986433
|
|
| >TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-43 Score=380.72 Aligned_cols=222 Identities=34% Similarity=0.571 Sum_probs=188.8
Q ss_pred EEEEeEEEECCCCCCcccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCC-----ccEEEECCccCCCC--CHH
Q 001411 835 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPI-----SGTVLIDGYDIRTL--NLR 907 (1082)
Q Consensus 835 I~~~~Vs~~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~-----~G~I~idG~di~~i--~~~ 907 (1082)
|+++||+++|+ +.++|+|+||+|++||++||+|+||||||||+++|.|+++|+ +|+|.+||.++... +..
T Consensus 2 l~~~~l~~~~~---~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~ 78 (247)
T TIGR00972 2 IEIENLNLFYG---EKEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVV 78 (247)
T ss_pred EEEEEEEEEEC---CeeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccchH
Confidence 78999999996 346999999999999999999999999999999999999998 99999999998763 456
Q ss_pred HHhcceEEEcccCccccccHHHHhccCCC--C-CC----HHHHHHHHHHhcHHHHHhhCcccccccccCCCCCCChhHHH
Q 001411 908 SLRRKIGLVQQEPALFSTTIYENIKYGNE--D-AS----EIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQ 980 (1082)
Q Consensus 908 ~lR~~i~~VpQdp~Lf~gTIreNl~~~~~--~-~~----d~ei~~al~~a~l~~~i~~lp~gldt~v~e~G~~LSgGQrQ 980 (1082)
.+|++++|+||++.+|+.|+++|+.++.. . .+ ++++.++++.+++.+++. ........+|||||||
T Consensus 79 ~~~~~i~~v~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LSgG~~q 151 (247)
T TIGR00972 79 ELRRRVGMVFQKPNPFPMSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVK-------DRLHDSALGLSGGQQQ 151 (247)
T ss_pred HHHhheEEEecCcccCCCCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchh-------hHhhCCcccCCHHHHH
Confidence 77899999999999999999999986421 1 11 234556666666653321 1223445679999999
Q ss_pred HHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhc-cCEEEEEeCCEEEEecChHHHh
Q 001411 981 RVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLMEGRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGSHEQLL 1059 (1082)
Q Consensus 981 rlaLARAlL~~~~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~G~~~eLl 1059 (1082)
|++|||||+++|++|||||||++||+.+.+.+.+.|++..+++|+|+|||+++.+.. ||+|++|++|++++.|+++++.
T Consensus 152 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 231 (247)
T TIGR00972 152 RLCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKKKYTIVIVTHNMQQAARISDRTAFFYDGELVEYGPTEQIF 231 (247)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCeEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999999999999999999987667899999999999865 9999999999999999999998
Q ss_pred hhccchH
Q 001411 1060 RKENGIY 1066 (1082)
Q Consensus 1060 ~~~~g~f 1066 (1082)
+.+...+
T Consensus 232 ~~~~~~~ 238 (247)
T TIGR00972 232 TNPKEKR 238 (247)
T ss_pred hCCCChH
Confidence 6544443
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters. |
| >PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-43 Score=388.66 Aligned_cols=217 Identities=34% Similarity=0.575 Sum_probs=184.5
Q ss_pred EEEEeEEEECCCCC--CcccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCccCCCCC--HHHHh
Q 001411 835 IELRNVSFKYPVRP--DITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLN--LRSLR 910 (1082)
Q Consensus 835 I~~~~Vs~~Y~~~~--~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~--~~~lR 910 (1082)
|+++||+++|+... ..++|+||||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.+++..+ ...+|
T Consensus 3 l~~~~l~~~y~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 82 (287)
T PRK13637 3 IKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDIR 82 (287)
T ss_pred EEEEEEEEECCCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCccHHHHh
Confidence 88999999997321 146999999999999999999999999999999999999999999999999998754 45788
Q ss_pred cceEEEcccC--ccccccHHHHhccCCC--CCCHH----HHHHHHHHhcHHHHHhhCcccccccccCCCCCCChhHHHHH
Q 001411 911 RKIGLVQQEP--ALFSTTIYENIKYGNE--DASEI----ELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRV 982 (1082)
Q Consensus 911 ~~i~~VpQdp--~Lf~gTIreNl~~~~~--~~~d~----ei~~al~~a~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrl 982 (1082)
++|+||||+| .+|+.|+++|+.++.. ..+++ .+.++++.+++. +.+........||||||||+
T Consensus 83 ~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~---------~~~~~~~~~~~LSgGq~qrv 153 (287)
T PRK13637 83 KKVGLVFQYPEYQLFEETIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLD---------YEDYKDKSPFELSGGQKRRV 153 (287)
T ss_pred hceEEEecCchhccccccHHHHHHhHHHHCCCCHHHHHHHHHHHHHHcCCC---------chhhccCCcccCCHHHHHHH
Confidence 9999999998 5788999999986421 22333 344555555543 00223445578999999999
Q ss_pred HHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHhcC--CceEEEEecCchhhh-ccCEEEEEeCCEEEEecChHHHh
Q 001411 983 AIARAILKNPSILLLDEATSALDTASENLIQEALDKLME--GRTTIMVAHRLSTIR-NADKIAVLQQGKVAEIGSHEQLL 1059 (1082)
Q Consensus 983 aLARAlL~~~~ILlLDEaTS~LD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~-~~DrI~Vl~~G~ive~G~~~eLl 1059 (1082)
+|||||+.+|++|||||||++||+.+.+.+.+.|++..+ +.|||+|||+++.+. .||||++|++|++++.|++++++
T Consensus 154 ~iAraL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~drv~~l~~G~i~~~g~~~~~~ 233 (287)
T PRK13637 154 AIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSMEDVAKLADRIIVMNKGKCELQGTPREVF 233 (287)
T ss_pred HHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 999999999999999999999999999999999998753 789999999999985 59999999999999999999987
Q ss_pred h
Q 001411 1060 R 1060 (1082)
Q Consensus 1060 ~ 1060 (1082)
+
T Consensus 234 ~ 234 (287)
T PRK13637 234 K 234 (287)
T ss_pred h
Confidence 5
|
|
| >cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-43 Score=379.79 Aligned_cols=216 Identities=31% Similarity=0.550 Sum_probs=183.9
Q ss_pred EEEEeEEEECCCCCCcccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCccCCCCCHHHH-hcce
Q 001411 835 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSL-RRKI 913 (1082)
Q Consensus 835 I~~~~Vs~~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~l-R~~i 913 (1082)
|+++||+++|+ +.++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+...+ |+++
T Consensus 1 l~~~~l~~~~~---~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i 77 (236)
T cd03219 1 LEVRGLTKRFG---GLVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLGI 77 (236)
T ss_pred CeeeeeEEEEC---CEEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECCCCCHHHHHhcCE
Confidence 47899999996 3469999999999999999999999999999999999999999999999999988876654 6789
Q ss_pred EEEcccCccccc-cHHHHhccCCCCCC------------HHHHHHHHHHhcHHHHHhhCcccccccccCCCCCCChhHHH
Q 001411 914 GLVQQEPALFST-TIYENIKYGNEDAS------------EIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQ 980 (1082)
Q Consensus 914 ~~VpQdp~Lf~g-TIreNl~~~~~~~~------------d~ei~~al~~a~l~~~i~~lp~gldt~v~e~G~~LSgGQrQ 980 (1082)
+|+||++.+|++ |+++|+.++..... .++. ...+.+.++.+ |++.........|||||||
T Consensus 78 ~~v~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~~--~l~~~~~~~~~~LSgG~~q 150 (236)
T cd03219 78 GRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREA-----RERAEELLERV--GLADLADRPAGELSYGQQR 150 (236)
T ss_pred EEEecccccccCCCHHHHHHHHHhhccccccccccccccHHHH-----HHHHHHHHHHc--CccchhhCChhhCCHHHHH
Confidence 999999999986 99999986532110 1111 11223444443 4554555566789999999
Q ss_pred HHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEecCchhhhc-cCEEEEEeCCEEEEecChHHH
Q 001411 981 RVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLM-EGRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGSHEQL 1058 (1082)
Q Consensus 981 rlaLARAlL~~~~ILlLDEaTS~LD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~G~~~eL 1058 (1082)
|++|||||+++|++|||||||++||+.+.+.+.+.|++.. +++|+|+|||+++.+.. ||+|++|++|++++.|+++++
T Consensus 151 rv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 230 (236)
T cd03219 151 RLEIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMDVVMSLADRVTVLDQGRVIAEGTPDEV 230 (236)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEeCCEEEeecCHHHh
Confidence 9999999999999999999999999999999999999875 58899999999999966 999999999999999999998
Q ss_pred hh
Q 001411 1059 LR 1060 (1082)
Q Consensus 1059 l~ 1060 (1082)
..
T Consensus 231 ~~ 232 (236)
T cd03219 231 RN 232 (236)
T ss_pred cc
Confidence 75
|
MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). |
| >cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-43 Score=377.80 Aligned_cols=212 Identities=33% Similarity=0.561 Sum_probs=181.2
Q ss_pred EEEEeEEEECCCCCCcccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCccCCCCCHHHHhcceE
Q 001411 835 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRKIG 914 (1082)
Q Consensus 835 I~~~~Vs~~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR~~i~ 914 (1082)
|+++||+++|+ +.++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++...+. .|++++
T Consensus 3 l~~~~l~~~~~---~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~--~~~~i~ 77 (239)
T cd03296 3 IEVRNVSKRFG---DFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPV--QERNVG 77 (239)
T ss_pred EEEEeEEEEEC---CEEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCc--cccceE
Confidence 78999999996 3469999999999999999999999999999999999999999999999999876553 367899
Q ss_pred EEcccCcccc-ccHHHHhccCCCCC------C----HHHHHHHHHHhcHHHHHhhCcccccccccCCCCCCChhHHHHHH
Q 001411 915 LVQQEPALFS-TTIYENIKYGNEDA------S----EIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVA 983 (1082)
Q Consensus 915 ~VpQdp~Lf~-gTIreNl~~~~~~~------~----d~ei~~al~~a~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrla 983 (1082)
|+||+|.+|. .|+++|+.++.... + ++++.++++..++.++. .....+||||||||++
T Consensus 78 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~qrl~ 146 (239)
T cd03296 78 FVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLA-----------DRYPAQLSGGQRQRVA 146 (239)
T ss_pred EEecCCcccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhh-----------hcChhhCCHHHHHHHH
Confidence 9999999986 59999998753211 1 12344455555554333 3344679999999999
Q ss_pred HHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHhcC--CceEEEEecCchhhhc-cCEEEEEeCCEEEEecChHHHhh
Q 001411 984 IARAILKNPSILLLDEATSALDTASENLIQEALDKLME--GRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGSHEQLLR 1060 (1082)
Q Consensus 984 LARAlL~~~~ILlLDEaTS~LD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~G~~~eLl~ 1060 (1082)
|||||+++|++|||||||++||+++.+.+.+.|++..+ ++|+|++||+++.+.. ||+|++|++|++++.|+++++.+
T Consensus 147 la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 226 (239)
T cd03296 147 LARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQEEALEVADRVVVMNKGRIEQVGTPDEVYD 226 (239)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHHHhc
Confidence 99999999999999999999999999999999998753 7899999999998765 99999999999999999999976
Q ss_pred hc
Q 001411 1061 KE 1062 (1082)
Q Consensus 1061 ~~ 1062 (1082)
.+
T Consensus 227 ~~ 228 (239)
T cd03296 227 HP 228 (239)
T ss_pred CC
Confidence 43
|
Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14242 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-43 Score=381.95 Aligned_cols=220 Identities=32% Similarity=0.565 Sum_probs=188.5
Q ss_pred cEEEEeEEEECCCCCCcccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccc-----CCccEEEECCccCCC--CCH
Q 001411 834 NIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYD-----PISGTVLIDGYDIRT--LNL 906 (1082)
Q Consensus 834 ~I~~~~Vs~~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~-----p~~G~I~idG~di~~--i~~ 906 (1082)
.|+++||+++|+ +.++|+|+||+|++||++||+|+||||||||+++|.|+++ |++|+|.+||.++.. .+.
T Consensus 6 ~l~~~~l~~~~~---~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 82 (253)
T PRK14242 6 KMEARGLSFFYG---DFQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVDV 82 (253)
T ss_pred EEEEeeeEEEEC---CeeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccccCH
Confidence 499999999996 3469999999999999999999999999999999999975 589999999999865 345
Q ss_pred HHHhcceEEEcccCccccccHHHHhccCCC--C-----CCHHHHHHHHHHhcHHHHHhhCcccccccccCCCCCCChhHH
Q 001411 907 RSLRRKIGLVQQEPALFSTTIYENIKYGNE--D-----ASEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQK 979 (1082)
Q Consensus 907 ~~lR~~i~~VpQdp~Lf~gTIreNl~~~~~--~-----~~d~ei~~al~~a~l~~~i~~lp~gldt~v~e~G~~LSgGQr 979 (1082)
..+|++++|+||++.+|+.|+++|+.++.. . ..++++.++++.+++.+.+.. .......+||||||
T Consensus 83 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LSgGq~ 155 (253)
T PRK14242 83 VELRRRVGMVFQKPNPFPKSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVKD-------RLHESALGLSGGQQ 155 (253)
T ss_pred HHHhhcEEEEecCCCCCcCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhhhH-------HhhCCcccCCHHHH
Confidence 678899999999999999999999986421 1 113456666777766544322 23445678999999
Q ss_pred HHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhc-cCEEEEEeCCEEEEecChHHH
Q 001411 980 QRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLMEGRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGSHEQL 1058 (1082)
Q Consensus 980 QrlaLARAlL~~~~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~G~~~eL 1058 (1082)
||++|||||+++|+||||||||++||+.+.+.+.+.|++..+++|||++||+++.+.. ||+|++|++|++++.|+++++
T Consensus 156 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 235 (253)
T PRK14242 156 QRLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELKARYTIIIVTHNMQQAARVSDVTAFFYMGKLIEVGPTEQI 235 (253)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCeEEEEEecHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999988667899999999999865 999999999999999999999
Q ss_pred hhhcc
Q 001411 1059 LRKEN 1063 (1082)
Q Consensus 1059 l~~~~ 1063 (1082)
.+.+.
T Consensus 236 ~~~~~ 240 (253)
T PRK14242 236 FTRPR 240 (253)
T ss_pred HcCCC
Confidence 86433
|
|
| >PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-43 Score=390.70 Aligned_cols=221 Identities=25% Similarity=0.466 Sum_probs=186.5
Q ss_pred CcEEEEEEEEECCCCC---CccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHHhCCCCCCcEEEECCeeCCCC------
Q 001411 204 GQIEFSEVCFAYPSRP---HMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSL------ 274 (1082)
Q Consensus 204 ~~i~~~~v~~~y~~~~---~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~------ 274 (1082)
..|+++|++|+|++.. .++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|+++.+.
T Consensus 20 ~~l~~~nl~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~~~~~~~~~ 99 (320)
T PRK13631 20 IILRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNHEL 99 (320)
T ss_pred ceEEEEeEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEcccccccccc
Confidence 3599999999997421 3499999999999999999999999999999999999999999999999998643
Q ss_pred ----------CHHHHhhhceEEccCC--CcChhcHHHHHhcCCCC--CCHHHHHHHHHHhchHHHHhcCCCCcc-ccccC
Q 001411 275 ----------QLKWLREQMGLVSQEP--ALFATSIANNILLGKED--ASMDRVIEAAKAANAHSFVEGLPDGYQ-TQVGE 339 (1082)
Q Consensus 275 ----------~~~~~~~~i~~v~Q~~--~l~~~ti~~ni~~g~~~--~~~~~~~~~~~~~~~~~~i~~lp~g~~-t~~g~ 339 (1082)
....+|+.|+||+|+| ++|+.|++|||.++... .+.++..+ . +.+.++.+ |++ ...++
T Consensus 100 ~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~---~--~~~~l~~~--gL~~~~~~~ 172 (320)
T PRK13631 100 ITNPYSKKIKNFKELRRRVSMVFQFPEYQLFKDTIEKDIMFGPVALGVKKSEAKK---L--AKFYLNKM--GLDDSYLER 172 (320)
T ss_pred cccccccccchHHHHHhcEEEEEECchhccccchHHHHHHhhHHhcCCCHHHHHH---H--HHHHHHHc--CCChhHhcC
Confidence 3456788999999998 78999999999987421 22222211 1 12334444 554 45677
Q ss_pred CCCCCChHHHHHHHHHHhcccCCCeeEEeCcccCCCHHHHHHHHHHHHHHc-CCCeEEEEccCcccc-ccCCEEEEEeCC
Q 001411 340 GGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIM-SNRTTIVVAHRLSTV-RDVDTIMVLKNG 417 (1082)
Q Consensus 340 ~g~~LSgGqkqri~lARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~vtH~~~~~-~~~d~i~~l~~G 417 (1082)
.+.+||||||||++|||||+.+|++|||||||++||+.+++.+.+.|.++. +++|+|+|||+++.+ +.||+|++|++|
T Consensus 173 ~~~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~g~TiiivtHd~~~~~~~adri~vl~~G 252 (320)
T PRK13631 173 SPFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTMEHVLEVADEVIVMDKG 252 (320)
T ss_pred CcccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECC
Confidence 888999999999999999999999999999999999999999999998874 478999999999987 469999999999
Q ss_pred EEEEecCchhhhhc
Q 001411 418 QVVESGTHVDLISK 431 (1082)
Q Consensus 418 ~i~~~g~~~~l~~~ 431 (1082)
++++.|+++++...
T Consensus 253 ~i~~~g~~~~~~~~ 266 (320)
T PRK13631 253 KILKTGTPYEIFTD 266 (320)
T ss_pred EEEEeCCHHHHhcC
Confidence 99999999988764
|
|
| >cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-43 Score=379.78 Aligned_cols=213 Identities=36% Similarity=0.576 Sum_probs=182.3
Q ss_pred EEEEeEEEECCCCCCcccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCccCCCCC---HHHHhc
Q 001411 835 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLN---LRSLRR 911 (1082)
Q Consensus 835 I~~~~Vs~~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~---~~~lR~ 911 (1082)
++++||+++|+. +.++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+ ...+|+
T Consensus 1 l~~~~l~~~~~~--~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 78 (241)
T cd03256 1 IEVENLSKTYPN--GKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLRR 78 (241)
T ss_pred CEEeeEEEecCC--ccEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccCHhHHHHHHh
Confidence 478999999963 246999999999999999999999999999999999999999999999999998876 456888
Q ss_pred ceEEEcccCcccc-ccHHHHhccCCCC--------------CCHHHHHHHHHHhcHHHHHhhCcccccccccCCCCCCCh
Q 001411 912 KIGLVQQEPALFS-TTIYENIKYGNED--------------ASEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSG 976 (1082)
Q Consensus 912 ~i~~VpQdp~Lf~-gTIreNl~~~~~~--------------~~d~ei~~al~~a~l~~~i~~lp~gldt~v~e~G~~LSg 976 (1082)
+++|+||++.+|. .|+++|+.++... ..++++.++++..++.+ .....+.+|||
T Consensus 79 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LS~ 147 (241)
T cd03256 79 QIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLD-----------KAYQRADQLSG 147 (241)
T ss_pred ccEEEcccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChh-----------hhCCCcccCCH
Confidence 9999999999887 6999999764211 11223444444444433 33445578999
Q ss_pred hHHHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHhc--CCceEEEEecCchhhh-ccCEEEEEeCCEEEEec
Q 001411 977 GQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLM--EGRTTIMVAHRLSTIR-NADKIAVLQQGKVAEIG 1053 (1082)
Q Consensus 977 GQrQrlaLARAlL~~~~ILlLDEaTS~LD~~te~~I~~~l~~~~--~~~TvI~IaHrl~ti~-~~DrI~Vl~~G~ive~G 1053 (1082)
|||||++|||||+++|+||||||||++||+.+.+.+.+.|++.. .++|+|+|||+++.+. .||+|++|++|++++.|
T Consensus 148 G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~G~i~~~~ 227 (241)
T cd03256 148 GQQQRVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVDLAREYADRIVGLKDGRIVFDG 227 (241)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeec
Confidence 99999999999999999999999999999999999999999875 3789999999999997 59999999999999999
Q ss_pred ChHHHhh
Q 001411 1054 SHEQLLR 1060 (1082)
Q Consensus 1054 ~~~eLl~ 1060 (1082)
+++++.+
T Consensus 228 ~~~~~~~ 234 (241)
T cd03256 228 PPAELTD 234 (241)
T ss_pred CHHHhhH
Confidence 9999743
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-42 Score=374.50 Aligned_cols=218 Identities=52% Similarity=0.869 Sum_probs=195.9
Q ss_pred CCCcEEEEEEEEECCCCC-CccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHHhCCCCCCcEEEECCeeCCCCCHHHHh
Q 001411 202 LAGQIEFSEVCFAYPSRP-HMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLR 280 (1082)
Q Consensus 202 ~~~~i~~~~v~~~y~~~~-~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~ 280 (1082)
..+.++++|++++|+++. .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+...++
T Consensus 8 ~~~~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~ 87 (226)
T cd03248 8 LKGIVKFQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYLH 87 (226)
T ss_pred cCceEEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCCchHHcCHHHHH
Confidence 346799999999997532 3599999999999999999999999999999999999999999999999998777777778
Q ss_pred hhceEEccCCCcChhcHHHHHhcCCCCCCHHHHHHHHHHhchHHHHhcCCCCccccccCCCCCCChHHHHHHHHHHhccc
Q 001411 281 EQMGLVSQEPALFATSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLR 360 (1082)
Q Consensus 281 ~~i~~v~Q~~~l~~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~lp~g~~t~~g~~g~~LSgGqkqri~lARal~~ 360 (1082)
+.++|++|++.+|+.|++||+.++.......++.+.+....+.+.++.+|.|+++.+.+...+||||||||++|||||+.
T Consensus 88 ~~i~~~~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG~~qrv~laral~~ 167 (226)
T cd03248 88 SKVSLVGQEPVLFARSLQDNIAYGLQSCSFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARALIR 167 (226)
T ss_pred hhEEEEecccHHHhhhHHHHhccccCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhc
Confidence 89999999999999999999998755444444555555567778899999999999999999999999999999999999
Q ss_pred CCCeeEEeCcccCCCHHHHHHHHHHHHHHcCCCeEEEEccCccccccCCEEEEEeCCEE
Q 001411 361 NPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRDVDTIMVLKNGQV 419 (1082)
Q Consensus 361 ~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~vtH~~~~~~~~d~i~~l~~G~i 419 (1082)
+|+++||||||++||+.+...+.+.++++.+++|+|++||+++.+..||+|++|++|++
T Consensus 168 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~i 226 (226)
T cd03248 168 NPQVLILDEATSALDAESEQQVQQALYDWPERRTVLVIAHRLSTVERADQILVLDGGRI 226 (226)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHhCCEEEEecCCcC
Confidence 99999999999999999999999999988777899999999999988999999999874
|
Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. |
| >PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-43 Score=397.92 Aligned_cols=221 Identities=28% Similarity=0.519 Sum_probs=194.7
Q ss_pred cEEEEeEEEECCCCCCcccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCccCCCCCHHHHhcce
Q 001411 834 NIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRKI 913 (1082)
Q Consensus 834 ~I~~~~Vs~~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR~~i 913 (1082)
.|+++|++++|+ +.++|+|+||+|++||+++|+||||||||||+++|.|+++|++|+|.++|.++.+++...+|++|
T Consensus 3 ~L~~~nls~~y~---~~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~~~~~~~~~i 79 (402)
T PRK09536 3 MIDVSDLSVEFG---DTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRRV 79 (402)
T ss_pred eEEEeeEEEEEC---CEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcCCHHHHhcce
Confidence 489999999996 45799999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEcccCcc-ccccHHHHhccCCC----------CCCHHHHHHHHHHhcHHHHHhhCcccccccccCCCCCCChhHHHHH
Q 001411 914 GLVQQEPAL-FSTTIYENIKYGNE----------DASEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRV 982 (1082)
Q Consensus 914 ~~VpQdp~L-f~gTIreNl~~~~~----------~~~d~ei~~al~~a~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrl 982 (1082)
+||||++.+ |+.|+++|+.++.. ..+.+.+.++++.+++.++..+ ...+||||||||+
T Consensus 80 g~v~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~-----------~~~~LSgGerQRv 148 (402)
T PRK09536 80 ASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADR-----------PVTSLSGGERQRV 148 (402)
T ss_pred EEEccCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcC-----------ChhhCCHHHHHHH
Confidence 999999987 67899999987531 1123457778888888765433 2357999999999
Q ss_pred HHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEecCchhhh-ccCEEEEEeCCEEEEecChHHHhh
Q 001411 983 AIARAILKNPSILLLDEATSALDTASENLIQEALDKLM-EGRTTIMVAHRLSTIR-NADKIAVLQQGKVAEIGSHEQLLR 1060 (1082)
Q Consensus 983 aLARAlL~~~~ILlLDEaTS~LD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~-~~DrI~Vl~~G~ive~G~~~eLl~ 1060 (1082)
+|||||+++|+||||||||++||+.+...+++.|+++. +++|+|+++|+++.+. .||||++|++|++++.|+|++++.
T Consensus 149 ~IArAL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~~g~TIIivsHdl~~~~~~adrii~l~~G~iv~~G~~~ev~~ 228 (402)
T PRK09536 149 LLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIHDLDLAARYCDELVLLADGRVRAAGPPADVLT 228 (402)
T ss_pred HHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEecCHHHHhC
Confidence 99999999999999999999999999999999999875 4789999999999995 599999999999999999999885
Q ss_pred hccchHHHHH
Q 001411 1061 KENGIYKQLI 1070 (1082)
Q Consensus 1061 ~~~g~f~~l~ 1070 (1082)
. ..+.+++
T Consensus 229 ~--~~l~~~~ 236 (402)
T PRK09536 229 A--DTLRAAF 236 (402)
T ss_pred c--HHHHHHh
Confidence 2 3444444
|
|
| >PRK10851 sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-43 Score=394.76 Aligned_cols=217 Identities=32% Similarity=0.543 Sum_probs=187.4
Q ss_pred cEEEEeEEEECCCCCCcccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCccCCCCCHHHHhcce
Q 001411 834 NIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRKI 913 (1082)
Q Consensus 834 ~I~~~~Vs~~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR~~i 913 (1082)
.|+++|++++|+ +.++|+|+||+|++||.+||+||||||||||+++|.|+++|++|+|.+||.++...+. .|++|
T Consensus 2 ~L~i~~l~~~~~---~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~--~~r~i 76 (353)
T PRK10851 2 SIEIANIKKSFG---RTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHA--RDRKV 76 (353)
T ss_pred EEEEEEEEEEeC---CeEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCH--HHCCE
Confidence 388999999996 3469999999999999999999999999999999999999999999999999987654 46789
Q ss_pred EEEcccCccccc-cHHHHhccCCC------CCC----HHHHHHHHHHhcHHHHHhhCcccccccccCCCCCCChhHHHHH
Q 001411 914 GLVQQEPALFST-TIYENIKYGNE------DAS----EIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRV 982 (1082)
Q Consensus 914 ~~VpQdp~Lf~g-TIreNl~~~~~------~~~----d~ei~~al~~a~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrl 982 (1082)
+||||++.+|+. |+++|+.++.. ..+ ++.+.++++..++.++..+ ....||||||||+
T Consensus 77 ~~v~Q~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~-----------~~~~LSgGq~QRv 145 (353)
T PRK10851 77 GFVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADR-----------YPAQLSGGQKQRV 145 (353)
T ss_pred EEEecCcccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhC-----------ChhhCCHHHHHHH
Confidence 999999999974 99999987632 112 2345556666666544333 3357999999999
Q ss_pred HHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHhcC--CceEEEEecCchhhhc-cCEEEEEeCCEEEEecChHHHh
Q 001411 983 AIARAILKNPSILLLDEATSALDTASENLIQEALDKLME--GRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGSHEQLL 1059 (1082)
Q Consensus 983 aLARAlL~~~~ILlLDEaTS~LD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~G~~~eLl 1059 (1082)
+|||||+++|++||||||||+||+.+.+.+.+.|++..+ ++|+|+|||+++.+.. ||||++|++|+|++.|+|+++.
T Consensus 146 alArAL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~ea~~~~Dri~vl~~G~i~~~g~~~~i~ 225 (353)
T PRK10851 146 ALARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQEEAMEVADRVVVMSQGNIEQAGTPDQVW 225 (353)
T ss_pred HHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 999999999999999999999999999999999998754 7899999999999865 9999999999999999999998
Q ss_pred hhccchH
Q 001411 1060 RKENGIY 1066 (1082)
Q Consensus 1060 ~~~~g~f 1066 (1082)
+++...|
T Consensus 226 ~~p~~~~ 232 (353)
T PRK10851 226 REPATRF 232 (353)
T ss_pred hCccchH
Confidence 7655444
|
|
| >PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-42 Score=384.23 Aligned_cols=215 Identities=33% Similarity=0.584 Sum_probs=189.6
Q ss_pred cEEEEeEEEECCCCCCcccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCccCCCCCHHHHhcce
Q 001411 834 NIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRKI 913 (1082)
Q Consensus 834 ~I~~~~Vs~~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR~~i 913 (1082)
.|+++||+++|+.. ..++|+|+||+|++||.+||+|+||||||||+++|+|+++|++|+|.+||.++.+.+...++++|
T Consensus 5 ~l~~~~l~~~~~~~-~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~~~~~~~~~i 83 (279)
T PRK13635 5 IIRVEHISFRYPDA-ATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVRRQV 83 (279)
T ss_pred eEEEEEEEEEeCCC-CccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHhhhe
Confidence 48999999999632 34699999999999999999999999999999999999999999999999999988888889999
Q ss_pred EEEcccC--ccccccHHHHhccCCCC--CCH----HHHHHHHHHhcHHHHHhhCcccccccccCCCCCCChhHHHHHHHH
Q 001411 914 GLVQQEP--ALFSTTIYENIKYGNED--ASE----IELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIA 985 (1082)
Q Consensus 914 ~~VpQdp--~Lf~gTIreNl~~~~~~--~~d----~ei~~al~~a~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlaLA 985 (1082)
+|+||+| .+++.|+++||.++... .+. +.+.++++..++.+++.+.| ..||||||||++||
T Consensus 84 ~~~~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----------~~LS~G~~qrv~la 152 (279)
T PRK13635 84 GMVFQNPDNQFVGATVQDDVAFGLENIGVPREEMVERVDQALRQVGMEDFLNREP-----------HRLSGGQKQRVAIA 152 (279)
T ss_pred EEEEeCHHHhcccccHHHHHhhhHhhCCCCHHHHHHHHHHHHHHcCChhhhhCCc-----------ccCCHHHHHHHHHH
Confidence 9999998 46678999999875211 222 34566677777766655443 47999999999999
Q ss_pred HHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHhcC--CceEEEEecCchhhhccCEEEEEeCCEEEEecChHHHhh
Q 001411 986 RAILKNPSILLLDEATSALDTASENLIQEALDKLME--GRTTIMVAHRLSTIRNADKIAVLQQGKVAEIGSHEQLLR 1060 (1082)
Q Consensus 986 RAlL~~~~ILlLDEaTS~LD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~~~DrI~Vl~~G~ive~G~~~eLl~ 1060 (1082)
|||+.+|+||||||||++||+.+.+.+.+.|++..+ ++|+|++||+++.+..||+|++|++|++++.|+++++.+
T Consensus 153 ral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 229 (279)
T PRK13635 153 GVLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLDEAAQADRVIVMNKGEILEEGTPEEIFK 229 (279)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHhc
Confidence 999999999999999999999999999999998763 789999999999998899999999999999999999875
|
|
| >PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-42 Score=394.77 Aligned_cols=217 Identities=35% Similarity=0.603 Sum_probs=191.2
Q ss_pred cEEEEeEEEECCCCCCcccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCccCCCCCHHHHhcce
Q 001411 834 NIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRKI 913 (1082)
Q Consensus 834 ~I~~~~Vs~~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR~~i 913 (1082)
.|+++|++++|+ +.++|+|+||+|++||.++|+||||||||||+++|.|+++|++|+|.+||.++..++.. ++++
T Consensus 14 ~L~l~~l~~~~~---~~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~--~r~i 88 (375)
T PRK09452 14 LVELRGISKSFD---GKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPAE--NRHV 88 (375)
T ss_pred eEEEEEEEEEEC---CeEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHH--HCCE
Confidence 599999999996 34699999999999999999999999999999999999999999999999999887764 5789
Q ss_pred EEEcccCccccc-cHHHHhccCCC--CCC----HHHHHHHHHHhcHHHHHhhCcccccccccCCCCCCChhHHHHHHHHH
Q 001411 914 GLVQQEPALFST-TIYENIKYGNE--DAS----EIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIAR 986 (1082)
Q Consensus 914 ~~VpQdp~Lf~g-TIreNl~~~~~--~~~----d~ei~~al~~a~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlaLAR 986 (1082)
+||+|++.+|+. |+++||.++.. ..+ ++++.++++..++.++..+.| .+||||||||++|||
T Consensus 89 g~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p-----------~~LSgGq~QRVaLAR 157 (375)
T PRK09452 89 NTVFQSYALFPHMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQLEEFAQRKP-----------HQLSGGQQQRVAIAR 157 (375)
T ss_pred EEEecCcccCCCCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhCCh-----------hhCCHHHHHHHHHHH
Confidence 999999999975 99999987632 122 234566777777777665554 579999999999999
Q ss_pred HHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHhcC--CceEEEEecCchhhhc-cCEEEEEeCCEEEEecChHHHhhhcc
Q 001411 987 AILKNPSILLLDEATSALDTASENLIQEALDKLME--GRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGSHEQLLRKEN 1063 (1082)
Q Consensus 987 AlL~~~~ILlLDEaTS~LD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~G~~~eLl~~~~ 1063 (1082)
||+++|++||||||||+||..+.+.+.+.|++..+ +.|+|+|||+++.+.. ||+|++|++|+|++.|+|+++.+++.
T Consensus 158 aL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~i~~~p~ 237 (375)
T PRK09452 158 AVVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRDGRIEQDGTPREIYEEPK 237 (375)
T ss_pred HHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCcc
Confidence 99999999999999999999999999999998764 7899999999999754 99999999999999999999988665
Q ss_pred chH
Q 001411 1064 GIY 1066 (1082)
Q Consensus 1064 g~f 1066 (1082)
..|
T Consensus 238 ~~~ 240 (375)
T PRK09452 238 NLF 240 (375)
T ss_pred cHH
Confidence 544
|
|
| >cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-43 Score=374.15 Aligned_cols=211 Identities=31% Similarity=0.530 Sum_probs=180.1
Q ss_pred EEEEeEEEECCCCCCcccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCccCCCCCHHHHhcceE
Q 001411 835 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRKIG 914 (1082)
Q Consensus 835 I~~~~Vs~~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR~~i~ 914 (1082)
|+++||+++|+.. ..++|+|+||+|++||.+||+||||||||||+++|.|+++|++|+|.+||.++.... ..+|++++
T Consensus 1 l~~~~l~~~~~~~-~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~-~~~~~~i~ 78 (220)
T cd03263 1 LQIRNLTKTYKKG-TKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDR-KAARQSLG 78 (220)
T ss_pred CEEEeeEEEeCCC-CceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccch-HHHhhhEE
Confidence 5789999999631 156999999999999999999999999999999999999999999999999987643 66788999
Q ss_pred EEcccCccc-cccHHHHhccCCC--CCCH----HHHHHHHHHhcHHHHHhhCcccccccccCCCCCCChhHHHHHHHHHH
Q 001411 915 LVQQEPALF-STTIYENIKYGNE--DASE----IELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARA 987 (1082)
Q Consensus 915 ~VpQdp~Lf-~gTIreNl~~~~~--~~~d----~ei~~al~~a~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlaLARA 987 (1082)
|+||++.+| ..|+++|+.++.. ..+. +++.++++..++.+.. ++ ...+||||||||++||||
T Consensus 79 ~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~----~~~~LS~G~~qrv~la~a 147 (220)
T cd03263 79 YCPQFDALFDELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLTDKA-------NK----RARTLSGGMKRKLSLAIA 147 (220)
T ss_pred EecCcCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHH-------hC----hhhhCCHHHHHHHHHHHH
Confidence 999999998 5799999976321 1121 2344555555554332 22 335799999999999999
Q ss_pred HccCCCEEEeeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhc-cCEEEEEeCCEEEEecChHHH
Q 001411 988 ILKNPSILLLDEATSALDTASENLIQEALDKLMEGRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGSHEQL 1058 (1082)
Q Consensus 988 lL~~~~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~G~~~eL 1058 (1082)
++++|++|||||||++||+.+.+.+.+.|++..+++|+|++||+++.+.. ||+|++|++|++++.|+++++
T Consensus 148 l~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~ 219 (220)
T cd03263 148 LIGGPSVLLLDEPTSGLDPASRRAIWDLILEVRKGRSIILTTHSMDEAEALCDRIAIMSDGKLRCIGSPQEL 219 (220)
T ss_pred HhcCCCEEEECCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhcCEEEEEECCEEEecCCHHHc
Confidence 99999999999999999999999999999988777999999999999965 999999999999999999875
|
Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. |
| >PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-42 Score=385.85 Aligned_cols=216 Identities=25% Similarity=0.487 Sum_probs=183.1
Q ss_pred EEEEeEEEECCCCC--CcccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCccCCC----CCHHH
Q 001411 835 IELRNVSFKYPVRP--DITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRT----LNLRS 908 (1082)
Q Consensus 835 I~~~~Vs~~Y~~~~--~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~----i~~~~ 908 (1082)
|+++||+++|+... ..++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.. .+...
T Consensus 2 i~~~~v~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 81 (288)
T PRK13643 2 IKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKP 81 (288)
T ss_pred EEEEEEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccccccHHH
Confidence 78999999997321 1369999999999999999999999999999999999999999999999999863 34567
Q ss_pred HhcceEEEcccC--ccccccHHHHhccCCCC--CCHH----HHHHHHHHhcHHHHHhhCcccccccccCCCCCCChhHHH
Q 001411 909 LRRKIGLVQQEP--ALFSTTIYENIKYGNED--ASEI----ELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQ 980 (1082)
Q Consensus 909 lR~~i~~VpQdp--~Lf~gTIreNl~~~~~~--~~d~----ei~~al~~a~l~~~i~~lp~gldt~v~e~G~~LSgGQrQ 980 (1082)
+|++++||+|+| .+|+.|+.+|+.++... .+.+ ++.++++.+++.+ ........+|||||||
T Consensus 82 ~~~~ig~v~q~~~~~l~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~----------~~~~~~~~~LSgGqkq 151 (288)
T PRK13643 82 VRKKVGVVFQFPESQLFEETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLAD----------EFWEKSPFELSGGQMR 151 (288)
T ss_pred HHhhEEEEecCcchhcccchHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCCh----------hhccCCcccCCHHHHH
Confidence 899999999998 79999999999875321 2222 2344455555421 1123445689999999
Q ss_pred HHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEecCchhhh-ccCEEEEEeCCEEEEecChHHH
Q 001411 981 RVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLM-EGRTTIMVAHRLSTIR-NADKIAVLQQGKVAEIGSHEQL 1058 (1082)
Q Consensus 981 rlaLARAlL~~~~ILlLDEaTS~LD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~-~~DrI~Vl~~G~ive~G~~~eL 1058 (1082)
|++|||||+.+|+||||||||++||+.+.+.+.+.|++.. +++|||+|||+++.+. .||||++|++|++++.|+|+++
T Consensus 152 rvaiA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~vtHd~~~~~~~~dri~~l~~G~i~~~g~~~~~ 231 (288)
T PRK13643 152 RVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMDDVADYADYVYLLEKGHIISCGTPSDV 231 (288)
T ss_pred HHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 9999999999999999999999999999999999998865 4789999999999885 5999999999999999999998
Q ss_pred hh
Q 001411 1059 LR 1060 (1082)
Q Consensus 1059 l~ 1060 (1082)
..
T Consensus 232 ~~ 233 (288)
T PRK13643 232 FQ 233 (288)
T ss_pred Hc
Confidence 75
|
|
| >PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-43 Score=386.94 Aligned_cols=220 Identities=32% Similarity=0.562 Sum_probs=185.1
Q ss_pred EEEEeEEEECCCCC--CcccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCccCCCC----CHHH
Q 001411 835 IELRNVSFKYPVRP--DITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTL----NLRS 908 (1082)
Q Consensus 835 I~~~~Vs~~Y~~~~--~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i----~~~~ 908 (1082)
|+++||+++|+..+ ..++|+||||+|++||++||+|+||||||||+++|.|+++|++|+|.+||+++... +...
T Consensus 3 l~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (286)
T PRK13646 3 IRFDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIRP 82 (286)
T ss_pred EEEEEEEEEECCCCccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHH
Confidence 88999999996322 24699999999999999999999999999999999999999999999999999754 3467
Q ss_pred HhcceEEEcccC--ccccccHHHHhccCCC--CCCHHHHHHHHHHhcHHHHHhhCcccccc-cccCCCCCCChhHHHHHH
Q 001411 909 LRRKIGLVQQEP--ALFSTTIYENIKYGNE--DASEIELMKATKAANAHGFISRMPEGYQS-HVGDRGVQLSGGQKQRVA 983 (1082)
Q Consensus 909 lR~~i~~VpQdp--~Lf~gTIreNl~~~~~--~~~d~ei~~al~~a~l~~~i~~lp~gldt-~v~e~G~~LSgGQrQrla 983 (1082)
+|++|+||||+| .+|+.|+.+|+.++.. ..+.++..+. +.+.++.+ |+++ .....+.+||||||||++
T Consensus 83 ~~~~ig~v~q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~-----~~~~l~~~--gL~~~~~~~~~~~LSgGq~qrv~ 155 (286)
T PRK13646 83 VRKRIGMVFQFPESQLFEDTVEREIIFGPKNFKMNLDEVKNY-----AHRLLMDL--GFSRDVMSQSPFQMSGGQMRKIA 155 (286)
T ss_pred HHhheEEEecChHhccchhhHHHHHHhhHHHcCCCHHHHHHH-----HHHHHHHc--CCChhhhhCCcccCCHHHHHHHH
Confidence 899999999998 5888999999987521 1233333221 12333333 5553 334567889999999999
Q ss_pred HHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHhc--CCceEEEEecCchhhh-ccCEEEEEeCCEEEEecChHHHhh
Q 001411 984 IARAILKNPSILLLDEATSALDTASENLIQEALDKLM--EGRTTIMVAHRLSTIR-NADKIAVLQQGKVAEIGSHEQLLR 1060 (1082)
Q Consensus 984 LARAlL~~~~ILlLDEaTS~LD~~te~~I~~~l~~~~--~~~TvI~IaHrl~ti~-~~DrI~Vl~~G~ive~G~~~eLl~ 1060 (1082)
|||||+.+|+||||||||++||+.+...+.+.|++.. .++|||+|||+++.+. .||||++|++|++++.|+++++.+
T Consensus 156 laraL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~~ 235 (286)
T PRK13646 156 IVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMNEVARYADEVIVMKEGSIVSQTSPKELFK 235 (286)
T ss_pred HHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 9999999999999999999999999999999999874 4799999999999985 599999999999999999999876
Q ss_pred h
Q 001411 1061 K 1061 (1082)
Q Consensus 1061 ~ 1061 (1082)
.
T Consensus 236 ~ 236 (286)
T PRK13646 236 D 236 (286)
T ss_pred C
Confidence 3
|
|
| >cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-42 Score=376.17 Aligned_cols=215 Identities=37% Similarity=0.585 Sum_probs=183.5
Q ss_pred EEEEeEEEECCCCC-CcccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCccCCCCCHH---HHh
Q 001411 835 IELRNVSFKYPVRP-DITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLR---SLR 910 (1082)
Q Consensus 835 I~~~~Vs~~Y~~~~-~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~---~lR 910 (1082)
|+++|++++|+.+. ..++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+.. .+|
T Consensus 2 i~~~~l~~~~~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (233)
T cd03258 2 IELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRKAR 81 (233)
T ss_pred eEEecceEEccCCCCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHH
Confidence 78999999996321 12799999999999999999999999999999999999999999999999999877654 357
Q ss_pred cceEEEcccCcccc-ccHHHHhccCCC--CCC----HHHHHHHHHHhcHHHHHhhCcccccccccCCCCCCChhHHHHHH
Q 001411 911 RKIGLVQQEPALFS-TTIYENIKYGNE--DAS----EIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVA 983 (1082)
Q Consensus 911 ~~i~~VpQdp~Lf~-gTIreNl~~~~~--~~~----d~ei~~al~~a~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrla 983 (1082)
++++|+||+|.+|. .|+++|+.++.. ..+ .+++.++++..++.+... ....+||||||||++
T Consensus 82 ~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrv~ 150 (233)
T cd03258 82 RRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIEERVLELLELVGLEDKAD-----------AYPAQLSGGQKQRVG 150 (233)
T ss_pred hheEEEccCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhh-----------cChhhCCHHHHHHHH
Confidence 89999999999997 699999976421 111 234555566655544433 334679999999999
Q ss_pred HHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHhc-C-CceEEEEecCchhhhc-cCEEEEEeCCEEEEecChHHHhh
Q 001411 984 IARAILKNPSILLLDEATSALDTASENLIQEALDKLM-E-GRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGSHEQLLR 1060 (1082)
Q Consensus 984 LARAlL~~~~ILlLDEaTS~LD~~te~~I~~~l~~~~-~-~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~G~~~eLl~ 1060 (1082)
||||++++|++|||||||++||+.+.+.+.+.|++.. + ++|+|++||+++.+.. ||++++|++|++++.|+++++.+
T Consensus 151 la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 230 (233)
T cd03258 151 IARALANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEMEVVKRICDRVAVMEKGEVVEEGTVEEVFA 230 (233)
T ss_pred HHHHHhcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHhc
Confidence 9999999999999999999999999999999999875 3 7899999999999865 99999999999999999998875
|
Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-42 Score=394.74 Aligned_cols=218 Identities=30% Similarity=0.485 Sum_probs=188.6
Q ss_pred ccEEEEeEEEECCCCCCcccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCc--cEEEECCccCCCCCHHHHh
Q 001411 833 GNIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPIS--GTVLIDGYDIRTLNLRSLR 910 (1082)
Q Consensus 833 g~I~~~~Vs~~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~--G~I~idG~di~~i~~~~lR 910 (1082)
|.|+++||+++|+ +.++|+|+||+|++||.++|+||||||||||+++|.|+++|++ |+|.+||.++...+. .+
T Consensus 4 ~~l~~~~l~~~~~---~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~~~--~~ 78 (362)
T TIGR03258 4 GGIRIDHLRVAYG---ANTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPP--HK 78 (362)
T ss_pred eEEEEEEEEEEEC---CeEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCCCH--HH
Confidence 5799999999996 3469999999999999999999999999999999999999999 999999999987665 36
Q ss_pred cceEEEcccCccccc-cHHHHhccCCC--CCCH----HHHHHHHHHhcHHHHHhhCcccccccccCCCCCCChhHHHHHH
Q 001411 911 RKIGLVQQEPALFST-TIYENIKYGNE--DASE----IELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVA 983 (1082)
Q Consensus 911 ~~i~~VpQdp~Lf~g-TIreNl~~~~~--~~~d----~ei~~al~~a~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrla 983 (1082)
++|+||+|++.+|+. |+++||.++.. ..+. +.+.++++.+++.++..+. ..+||||||||++
T Consensus 79 r~ig~vfQ~~~l~p~~tv~enl~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~-----------~~~LSgGq~QRva 147 (362)
T TIGR03258 79 RGLALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAERVADALKLVGLGDAAAHL-----------PAQLSGGMQQRIA 147 (362)
T ss_pred CCEEEEECCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCchhhCC-----------hhhCCHHHHHHHH
Confidence 789999999999976 99999987532 1222 2345556666665544433 3579999999999
Q ss_pred HHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHhcC---CceEEEEecCchhhhc-cCEEEEEeCCEEEEecChHHHh
Q 001411 984 IARAILKNPSILLLDEATSALDTASENLIQEALDKLME---GRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGSHEQLL 1059 (1082)
Q Consensus 984 LARAlL~~~~ILlLDEaTS~LD~~te~~I~~~l~~~~~---~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~G~~~eLl 1059 (1082)
|||||+++|++||||||||+||+.+...+++.|++..+ +.|+|+|||+++.+.. ||||+||++|++++.|+|+++.
T Consensus 148 LARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~ea~~l~dri~vl~~G~i~~~g~~~~~~ 227 (362)
T TIGR03258 148 IARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQDDALTLADKAGIMKDGRLAAHGEPQALY 227 (362)
T ss_pred HHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 99999999999999999999999999999999998754 6899999999999855 9999999999999999999998
Q ss_pred hhccchH
Q 001411 1060 RKENGIY 1066 (1082)
Q Consensus 1060 ~~~~g~f 1066 (1082)
+++...|
T Consensus 228 ~~p~~~~ 234 (362)
T TIGR03258 228 DAPADGF 234 (362)
T ss_pred hCcCcHH
Confidence 8665544
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. |
| >cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-42 Score=373.20 Aligned_cols=217 Identities=30% Similarity=0.463 Sum_probs=180.2
Q ss_pred EEEEeEEEECCCCCCcccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCccCCCCCHHHH-hcce
Q 001411 835 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSL-RRKI 913 (1082)
Q Consensus 835 I~~~~Vs~~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~l-R~~i 913 (1082)
|+++||+++|+ +.++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++...+...+ |+++
T Consensus 1 l~~~~l~~~~~---~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i 77 (222)
T cd03224 1 LEVENLNAGYG---KSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARAGI 77 (222)
T ss_pred CEEeeEEeecC---CeeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCCCCHHHHHhcCe
Confidence 57899999996 3469999999999999999999999999999999999999999999999999988876654 6789
Q ss_pred EEEcccCccccc-cHHHHhccCCCCCCHHHHHHHHHHhcHHHHHhhCcccccccccCCCCCCChhHHHHHHHHHHHccCC
Q 001411 914 GLVQQEPALFST-TIYENIKYGNEDASEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNP 992 (1082)
Q Consensus 914 ~~VpQdp~Lf~g-TIreNl~~~~~~~~d~ei~~al~~a~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlaLARAlL~~~ 992 (1082)
+|+||++.+|++ |+++|+.++.......+..+.+ .+.++.++ +++.........||||||||++||||++++|
T Consensus 78 ~~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~-----~~~l~~~~-~l~~~~~~~~~~LS~G~~qrv~laral~~~p 151 (222)
T cd03224 78 GYVPEGRRIFPELTVEENLLLGAYARRRAKRKARL-----ERVYELFP-RLKERRKQLAGTLSGGEQQMLAIARALMSRP 151 (222)
T ss_pred EEeccccccCCCCcHHHHHHHHhhhcCchhHHHHH-----HHHHHHHH-hhhhhhhCchhhCCHHHHHHHHHHHHHhcCC
Confidence 999999999986 9999998753322111111111 11122111 1222333455679999999999999999999
Q ss_pred CEEEeeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEecCchhhhc-cCEEEEEeCCEEEEecChHHHhh
Q 001411 993 SILLLDEATSALDTASENLIQEALDKLM-EGRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGSHEQLLR 1060 (1082)
Q Consensus 993 ~ILlLDEaTS~LD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~G~~~eLl~ 1060 (1082)
++|||||||++||+++.+.+.+.|++.. +++|+|++||+++.+.. ||+|++|++|++++.|+++++.+
T Consensus 152 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 221 (222)
T cd03224 152 KLLLLDEPSEGLAPKIVEEIFEAIRELRDEGVTILLVEQNARFALEIADRAYVLERGRVVLEGTAAELLA 221 (222)
T ss_pred CEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhccEEEEeeCCeEEEeCCHHHHhc
Confidence 9999999999999999999999999875 47899999999999865 99999999999999999988764
|
The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. |
| >PRK14267 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-42 Score=380.56 Aligned_cols=225 Identities=31% Similarity=0.473 Sum_probs=188.9
Q ss_pred cEEEEeEEEECCCCCCcccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccC-----CccEEEECCccCC--CCCH
Q 001411 834 NIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDP-----ISGTVLIDGYDIR--TLNL 906 (1082)
Q Consensus 834 ~I~~~~Vs~~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p-----~~G~I~idG~di~--~i~~ 906 (1082)
.|+++||+++|+ +.++|+|+||+|++||++||+|+||||||||+++|.|+++| ++|+|.+||.++. +.+.
T Consensus 4 ~l~~~~l~~~~~---~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~ 80 (253)
T PRK14267 4 AIETVNLRVYYG---SNHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDP 80 (253)
T ss_pred eEEEEeEEEEeC---CeeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccCh
Confidence 489999999996 34699999999999999999999999999999999999987 4999999999987 4566
Q ss_pred HHHhcceEEEcccCccccc-cHHHHhccCCC--C--CC----HHHHHHHHHHhcHHHHHhhCcccccccccCCCCCCChh
Q 001411 907 RSLRRKIGLVQQEPALFST-TIYENIKYGNE--D--AS----EIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGG 977 (1082)
Q Consensus 907 ~~lR~~i~~VpQdp~Lf~g-TIreNl~~~~~--~--~~----d~ei~~al~~a~l~~~i~~lp~gldt~v~e~G~~LSgG 977 (1082)
..+|++++|+||++.+|++ |+++|+.++.. . .+ ++.+.++++..++.+.+. ........+||||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~G 153 (253)
T PRK14267 81 IEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEVK-------DRLNDYPSNLSGG 153 (253)
T ss_pred HHHhhceeEEecCCccCCCCcHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCccchh-------hhhccChhhCCHH
Confidence 6788999999999999975 99999976421 1 01 234555666666543322 1233455789999
Q ss_pred HHHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhc-cCEEEEEeCCEEEEecChH
Q 001411 978 QKQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLMEGRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGSHE 1056 (1082)
Q Consensus 978 QrQrlaLARAlL~~~~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~G~~~ 1056 (1082)
||||++|||||+++|++|||||||++||+.+.+.+.+.|++..+++|+|+|||+++.+.. ||+|++|++|++++.|+++
T Consensus 154 ~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~ 233 (253)
T PRK14267 154 QRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKKEYTIVLVTHSPAQAARVSDYVAFLYLGKLIEVGPTR 233 (253)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhhCCEEEEEECCHHHHHhhCCEEEEEECCEEEEeCCHH
Confidence 999999999999999999999999999999999999999998667999999999999865 9999999999999999999
Q ss_pred HHhhhccchHHH
Q 001411 1057 QLLRKENGIYKQ 1068 (1082)
Q Consensus 1057 eLl~~~~g~f~~ 1068 (1082)
++.+.+...|.+
T Consensus 234 ~~~~~~~~~~~~ 245 (253)
T PRK14267 234 KVFENPEHELTE 245 (253)
T ss_pred HHHhCCCcHHHH
Confidence 998643333433
|
|
| >TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-42 Score=378.14 Aligned_cols=212 Identities=34% Similarity=0.554 Sum_probs=181.1
Q ss_pred EEEEeEEEECCCCCCcccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCccCCCCCH---HHHhc
Q 001411 835 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNL---RSLRR 911 (1082)
Q Consensus 835 I~~~~Vs~~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~---~~lR~ 911 (1082)
|+++||+++|+ .+.++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++..++. ..+|+
T Consensus 2 l~~~~l~~~~~--~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (243)
T TIGR02315 2 LEVENLSKVYP--NGKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKLRR 79 (243)
T ss_pred eEEEeeeeecC--CCcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCCHHHHHHHHh
Confidence 78999999996 13469999999999999999999999999999999999999999999999999987654 34788
Q ss_pred ceEEEcccCcccc-ccHHHHhccCCCC--------------CCHHHHHHHHHHhcHHHHHhhCcccccccccCCCCCCCh
Q 001411 912 KIGLVQQEPALFS-TTIYENIKYGNED--------------ASEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSG 976 (1082)
Q Consensus 912 ~i~~VpQdp~Lf~-gTIreNl~~~~~~--------------~~d~ei~~al~~a~l~~~i~~lp~gldt~v~e~G~~LSg 976 (1082)
+++|+||++.+|. .|+++|+.++... ..++++.++++..++.++ ......+|||
T Consensus 80 ~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LSg 148 (243)
T TIGR02315 80 RIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADK-----------AYQRADQLSG 148 (243)
T ss_pred heEEEcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhh-----------hcCCcccCCH
Confidence 9999999999886 6999999764211 012234444555544333 3345568999
Q ss_pred hHHHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHhc--CCceEEEEecCchhhhc-cCEEEEEeCCEEEEec
Q 001411 977 GQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLM--EGRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIG 1053 (1082)
Q Consensus 977 GQrQrlaLARAlL~~~~ILlLDEaTS~LD~~te~~I~~~l~~~~--~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~G 1053 (1082)
|||||++|||||+++|++|||||||++||+++.+.+.+.|++.. .++|+|+|||+++.+.. ||+|++|++|++++.|
T Consensus 149 G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~~ 228 (243)
T TIGR02315 149 GQQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVDLAKKYADRIVGLKAGEIVFDG 228 (243)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEecC
Confidence 99999999999999999999999999999999999999999874 27899999999999865 9999999999999999
Q ss_pred ChHHHh
Q 001411 1054 SHEQLL 1059 (1082)
Q Consensus 1054 ~~~eLl 1059 (1082)
+++++.
T Consensus 229 ~~~~~~ 234 (243)
T TIGR02315 229 APSELD 234 (243)
T ss_pred CHHHhC
Confidence 999874
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates. |
| >PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-42 Score=394.49 Aligned_cols=213 Identities=31% Similarity=0.516 Sum_probs=184.9
Q ss_pred cEEEEEEEEECCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHHhCCCCCCcEEEECCeeCCCCCHHHHhhhce
Q 001411 205 QIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMG 284 (1082)
Q Consensus 205 ~i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 284 (1082)
.++++|++++|++ ...+|+|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++.+.++. ++.||
T Consensus 3 ~l~i~~l~~~~~~-~~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~--~r~ig 79 (356)
T PRK11650 3 GLKLQAVRKSYDG-KTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEPA--DRDIA 79 (356)
T ss_pred EEEEEeEEEEeCC-CCEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHH--HCCEE
Confidence 3899999999942 23599999999999999999999999999999999999999999999999999877654 46899
Q ss_pred EEccCCCcChh-cHHHHHhcCCCC--CC----HHHHHHHHHHhchHHHHhcCCCCccccccCCCCCCChHHHHHHHHHHh
Q 001411 285 LVSQEPALFAT-SIANNILLGKED--AS----MDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARA 357 (1082)
Q Consensus 285 ~v~Q~~~l~~~-ti~~ni~~g~~~--~~----~~~~~~~~~~~~~~~~i~~lp~g~~t~~g~~g~~LSgGqkqri~lARa 357 (1082)
||+|++.+|+. ||+|||.|+... .+ .+++.++++..++.++.++.| .+|||||||||+||||
T Consensus 80 ~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----------~~LSgGq~QRvalARA 148 (356)
T PRK11650 80 MVFQNYALYPHMSVRENMAYGLKIRGMPKAEIEERVAEAARILELEPLLDRKP-----------RELSGGQRQRVAMGRA 148 (356)
T ss_pred EEeCCccccCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhHhhCCh-----------hhCCHHHHHHHHHHHH
Confidence 99999999975 999999987532 11 234556666666655555544 5899999999999999
Q ss_pred cccCCCeeEEeCcccCCCHHHHHHHHHHHHHHcC--CCeEEEEccCccccc-cCCEEEEEeCCEEEEecCchhhhhc
Q 001411 358 VLRNPKILLLDEATSALDAESELIVQRALEKIMS--NRTTIVVAHRLSTVR-DVDTIMVLKNGQVVESGTHVDLISK 431 (1082)
Q Consensus 358 l~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~vtH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~~ 431 (1082)
|+.+|++||||||||+||+.++..+.+.|+++.+ +.|+|+|||+++.+. .||+|++|++|++++.|+++++..+
T Consensus 149 L~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~l~D~i~vl~~G~i~~~g~~~~~~~~ 225 (356)
T PRK11650 149 IVREPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQVEAMTLADRVVVMNGGVAEQIGTPVEVYEK 225 (356)
T ss_pred HhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEECCHHHHHhC
Confidence 9999999999999999999999999999988754 689999999999775 5999999999999999999998765
|
|
| >PRK14235 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-42 Score=381.37 Aligned_cols=223 Identities=30% Similarity=0.542 Sum_probs=190.3
Q ss_pred ccccEEEEeEEEECCCCCCcccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccC-----CccEEEECCccCCC--
Q 001411 831 IKGNIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDP-----ISGTVLIDGYDIRT-- 903 (1082)
Q Consensus 831 ~~g~I~~~~Vs~~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p-----~~G~I~idG~di~~-- 903 (1082)
..+.|+++||+++|+ +.++|+|+||+|++||++||+|+||||||||+++|.|+++| ++|+|.+||.++..
T Consensus 16 ~~~~l~~~nl~~~~~---~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~ 92 (267)
T PRK14235 16 TEIKMRARDVSVFYG---EKQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPR 92 (267)
T ss_pred CCceEEEEeEEEEEC---CEEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECcccc
Confidence 345799999999996 34699999999999999999999999999999999999975 89999999999875
Q ss_pred CCHHHHhcceEEEcccCccccccHHHHhccCCC--CC--C----HHHHHHHHHHhcHHHHHhhCcccccccccCCCCCCC
Q 001411 904 LNLRSLRRKIGLVQQEPALFSTTIYENIKYGNE--DA--S----EIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLS 975 (1082)
Q Consensus 904 i~~~~lR~~i~~VpQdp~Lf~gTIreNl~~~~~--~~--~----d~ei~~al~~a~l~~~i~~lp~gldt~v~e~G~~LS 975 (1082)
.+...+|++++|+||+|.+|+.|+++|+.++.. .. + ++++.++++.+++.+++. ......+.+||
T Consensus 93 ~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS 165 (267)
T PRK14235 93 LDVVELRARVGMVFQKPNPFPKSIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVK-------DRLHEPGTGLS 165 (267)
T ss_pred cchHHHhhceEEEecCCCCCCCcHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhhh-------HHhhCCcccCC
Confidence 345678899999999999999999999986421 10 1 234566677776654332 12334557899
Q ss_pred hhHHHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhc-cCEEEEEeCCEEEEecC
Q 001411 976 GGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLMEGRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGS 1054 (1082)
Q Consensus 976 gGQrQrlaLARAlL~~~~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~G~ 1054 (1082)
||||||++|||||+.+|++|||||||++||+.+.+.+.+.|++..+++|+|++||+++.+.. ||++++|++|+++++|+
T Consensus 166 gGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~~~tiiivtH~~~~~~~~~d~v~~l~~G~i~~~g~ 245 (267)
T PRK14235 166 GGQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQNYTIVIVTHSMQQAARVSQRTAFFHLGNLVEVGD 245 (267)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhcCCeEEEEEcCHHHHHhhCCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999999999999987667899999999999965 99999999999999999
Q ss_pred hHHHhhhcc
Q 001411 1055 HEQLLRKEN 1063 (1082)
Q Consensus 1055 ~~eLl~~~~ 1063 (1082)
++++..++.
T Consensus 246 ~~~~~~~~~ 254 (267)
T PRK14235 246 TEKMFTNPD 254 (267)
T ss_pred HHHHHhCCC
Confidence 999986433
|
|
| >cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-43 Score=375.11 Aligned_cols=212 Identities=34% Similarity=0.552 Sum_probs=179.1
Q ss_pred EEEEEEEEECCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHHhCC-----CCCCcEEEECCeeCCCCC--HHH
Q 001411 206 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLY-----EPTSGKILLDGHDLKSLQ--LKW 278 (1082)
Q Consensus 206 i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~-----~~~~G~i~~~g~~~~~~~--~~~ 278 (1082)
|+++|++++|+++ ++|+|+||++++||+++|+||||||||||+++|+|++ +|++|+|.++|+++...+ ...
T Consensus 1 i~~~~l~~~~~~~--~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~ 78 (227)
T cd03260 1 IELRDLNVYYGDK--HALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVLE 78 (227)
T ss_pred CEEEEEEEEcCCc--eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcchHHHH
Confidence 4789999999753 4999999999999999999999999999999999999 999999999999987766 556
Q ss_pred HhhhceEEccCCCcChhcHHHHHhcCCCCC---C----HHHHHHHHHHhchHHHHhcCCCCccccccCCCCCCChHHHHH
Q 001411 279 LREQMGLVSQEPALFATSIANNILLGKEDA---S----MDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQR 351 (1082)
Q Consensus 279 ~~~~i~~v~Q~~~l~~~ti~~ni~~g~~~~---~----~~~~~~~~~~~~~~~~i~~lp~g~~t~~g~~g~~LSgGqkqr 351 (1082)
+++.++|++|++.+|+.|++||+.++.... . .+++.++++..++.+.+.+.++ +.+||||||||
T Consensus 79 ~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---------~~~LSgG~~qr 149 (227)
T cd03260 79 LRRRVGMVFQKPNPFPGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDEVKDRLH---------ALGLSGGQQQR 149 (227)
T ss_pred HHhhEEEEecCchhccccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChHHhccCC---------cccCCHHHHHH
Confidence 788899999999999779999998753211 1 2234444554444333322210 46899999999
Q ss_pred HHHHHhcccCCCeeEEeCcccCCCHHHHHHHHHHHHHHcCCCeEEEEccCccccc-cCCEEEEEeCCEEEEecCchhh
Q 001411 352 IAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVR-DVDTIMVLKNGQVVESGTHVDL 428 (1082)
Q Consensus 352 i~lARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~vtH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l 428 (1082)
++|||||+.+|+++||||||++||+.+++.+.+.|+++.+++|+|++||+++.+. .||++++|++|++++.|+++++
T Consensus 150 v~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 227 (227)
T cd03260 150 LCLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKKEYTIVIVTHNMQQAARVADRTAFLLNGRLVEFGPTEQI 227 (227)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhhCcEEEEEeccHHHHHHhCCEEEEEeCCEEEEecCcccC
Confidence 9999999999999999999999999999999999998865589999999999876 5999999999999999987654
|
The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). |
| >PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-42 Score=382.32 Aligned_cols=216 Identities=33% Similarity=0.554 Sum_probs=188.8
Q ss_pred cEEEEeEEEECCCCCCcccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCccCCCCCHHHHhcce
Q 001411 834 NIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRKI 913 (1082)
Q Consensus 834 ~I~~~~Vs~~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR~~i 913 (1082)
.|+++||+++|+.....++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.+.+...+|+++
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~i 83 (277)
T PRK13642 4 ILEVENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRRKI 83 (277)
T ss_pred eEEEEEEEEEcCCCCcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEECCcCCHHHHhcce
Confidence 48999999999743234699999999999999999999999999999999999999999999999999888888889999
Q ss_pred EEEcccC--ccccccHHHHhccCCC--CCCHHH----HHHHHHHhcHHHHHhhCcccccccccCCCCCCChhHHHHHHHH
Q 001411 914 GLVQQEP--ALFSTTIYENIKYGNE--DASEIE----LMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIA 985 (1082)
Q Consensus 914 ~~VpQdp--~Lf~gTIreNl~~~~~--~~~d~e----i~~al~~a~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlaLA 985 (1082)
+|+||+| .++..|+.+||.++.. ..++++ +.++++.+++.++..+ ....||||||||++||
T Consensus 84 ~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrv~lA 152 (277)
T PRK13642 84 GMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKRVDEALLAVNMLDFKTR-----------EPARLSGGQKQRVAVA 152 (277)
T ss_pred EEEEECHHHhhccCCHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHhHhhC-----------CcccCCHHHHHHHHHH
Confidence 9999998 4678899999986421 223333 4556666666555433 3367999999999999
Q ss_pred HHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHhcC--CceEEEEecCchhhhccCEEEEEeCCEEEEecChHHHhh
Q 001411 986 RAILKNPSILLLDEATSALDTASENLIQEALDKLME--GRTTIMVAHRLSTIRNADKIAVLQQGKVAEIGSHEQLLR 1060 (1082)
Q Consensus 986 RAlL~~~~ILlLDEaTS~LD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~~~DrI~Vl~~G~ive~G~~~eLl~ 1060 (1082)
|||+++|+||||||||++||+.+.+.+.+.|++..+ ++|+|+|||+++.+..||+|++|++|++++.|+++++++
T Consensus 153 raL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 229 (277)
T PRK13642 153 GIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDEAASSDRILVMKAGEIIKEAAPSELFA 229 (277)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 999999999999999999999999999999998753 789999999999998899999999999999999999876
|
|
| >TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-43 Score=373.48 Aligned_cols=203 Identities=33% Similarity=0.570 Sum_probs=174.9
Q ss_pred EEEEeEEEECCCCCCcccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCccCCCCCHH---HHhc
Q 001411 835 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLR---SLRR 911 (1082)
Q Consensus 835 I~~~~Vs~~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~---~lR~ 911 (1082)
|+++||+++|+.. ..++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+.. .+|+
T Consensus 2 l~~~~l~~~~~~~-~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 80 (216)
T TIGR00960 2 IRFEQVSKAYPGG-HQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGREIPFLRR 80 (216)
T ss_pred eEEEEEEEEecCC-CeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcChhHHHHHHH
Confidence 7899999999632 24699999999999999999999999999999999999999999999999998876543 4788
Q ss_pred ceEEEcccCcccc-ccHHHHhccCCC------CCCHHHHHHHHHHhcHHHHHhhCcccccccccCCCCCCChhHHHHHHH
Q 001411 912 KIGLVQQEPALFS-TTIYENIKYGNE------DASEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAI 984 (1082)
Q Consensus 912 ~i~~VpQdp~Lf~-gTIreNl~~~~~------~~~d~ei~~al~~a~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlaL 984 (1082)
+++|+||+|.+|. .|++||+.++.. ...++++.++++..++.++..+.| .+||||||||++|
T Consensus 81 ~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LSgG~~qrv~l 149 (216)
T TIGR00960 81 HIGMVFQDHRLLSDRTVYDNVAFPLRIIGVPPRDANERVSAALEKVGLEGKAHALP-----------MQLSGGEQQRVAI 149 (216)
T ss_pred hceEEecCccccccccHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCCh-----------hhCCHHHHHHHHH
Confidence 9999999999887 599999986411 112345667777777765544332 5799999999999
Q ss_pred HHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEecCchhhhc-cCEEEEEeCCEE
Q 001411 985 ARAILKNPSILLLDEATSALDTASENLIQEALDKLM-EGRTTIMVAHRLSTIRN-ADKIAVLQQGKV 1049 (1082)
Q Consensus 985 ARAlL~~~~ILlLDEaTS~LD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~i 1049 (1082)
||||+++|+||||||||++||+++.+.+.+.|++.. +++|+|+|||+++.+.. ||+|++|++|+|
T Consensus 150 aral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i 216 (216)
T TIGR00960 150 ARAIVHKPPLLLADEPTGNLDPELSRDIMRLFEEFNRRGTTVLVATHDINLVETYRHRTLTLSRGRL 216 (216)
T ss_pred HHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 999999999999999999999999999999999874 47899999999999975 999999999985
|
|
| >PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-42 Score=384.09 Aligned_cols=214 Identities=29% Similarity=0.508 Sum_probs=185.1
Q ss_pred cEEEEeEEEECCCCCCcccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCccCC--CCCHHHHhc
Q 001411 834 NIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIR--TLNLRSLRR 911 (1082)
Q Consensus 834 ~I~~~~Vs~~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~--~i~~~~lR~ 911 (1082)
.|+++||+++|+. +.++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++. ..+...+|+
T Consensus 5 ~l~~~~l~~~~~~--~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~ 82 (283)
T PRK13636 5 ILKVEELNYNYSD--GTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLRE 82 (283)
T ss_pred eEEEEeEEEEeCC--CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEECCCCcchHHHHHh
Confidence 4899999999962 346999999999999999999999999999999999999999999999999984 344667899
Q ss_pred ceEEEcccC--ccccccHHHHhccCCC--CCCH----HHHHHHHHHhcHHHHHhhCcccccccccCCCCCCChhHHHHHH
Q 001411 912 KIGLVQQEP--ALFSTTIYENIKYGNE--DASE----IELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVA 983 (1082)
Q Consensus 912 ~i~~VpQdp--~Lf~gTIreNl~~~~~--~~~d----~ei~~al~~a~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrla 983 (1082)
+++|+||+| .+|+.|+++|+.++.. ..+. +.+.++++..++.++ ......+||||||||++
T Consensus 83 ~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~-----------~~~~~~~LS~G~~qrl~ 151 (283)
T PRK13636 83 SVGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEHL-----------KDKPTHCLSFGQKKRVA 151 (283)
T ss_pred hEEEEecCcchhhccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhh-----------hhCCcccCCHHHHHHHH
Confidence 999999998 5788999999986421 1222 234555566665443 23345789999999999
Q ss_pred HHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHhcC--CceEEEEecCchhhh-ccCEEEEEeCCEEEEecChHHHhh
Q 001411 984 IARAILKNPSILLLDEATSALDTASENLIQEALDKLME--GRTTIMVAHRLSTIR-NADKIAVLQQGKVAEIGSHEQLLR 1060 (1082)
Q Consensus 984 LARAlL~~~~ILlLDEaTS~LD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~-~~DrI~Vl~~G~ive~G~~~eLl~ 1060 (1082)
|||||+.+|+||||||||++||+.+.+.+.+.|++..+ ++|||++||+++.+. .||||++|++|++++.|+++++++
T Consensus 152 laraL~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~~ 231 (283)
T PRK13636 152 IAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFA 231 (283)
T ss_pred HHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 99999999999999999999999999999999998753 799999999999997 599999999999999999999876
|
|
| >cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-43 Score=372.27 Aligned_cols=203 Identities=39% Similarity=0.614 Sum_probs=173.5
Q ss_pred EEEEeEEEECCCCCCcccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCccCCCCCHHHHhcceE
Q 001411 835 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRKIG 914 (1082)
Q Consensus 835 I~~~~Vs~~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR~~i~ 914 (1082)
|+++||+++|+ +.++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.+.+. .+++++
T Consensus 1 l~~~~l~~~~~---~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~--~~~~i~ 75 (213)
T cd03259 1 LELKGLSKTYG---SVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPP--ERRNIG 75 (213)
T ss_pred CeeeeeEEEeC---CeeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcCch--hhccEE
Confidence 47899999996 3469999999999999999999999999999999999999999999999999876543 577899
Q ss_pred EEcccCcccc-ccHHHHhccCCCC--CC----HHHHHHHHHHhcHHHHHhhCcccccccccCCCCCCChhHHHHHHHHHH
Q 001411 915 LVQQEPALFS-TTIYENIKYGNED--AS----EIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARA 987 (1082)
Q Consensus 915 ~VpQdp~Lf~-gTIreNl~~~~~~--~~----d~ei~~al~~a~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlaLARA 987 (1082)
|+||+|.+|. .|+++|+.++... .+ ++++.++++..++.++.. ....+||||||||++||||
T Consensus 76 ~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LSgG~~qrl~la~a 144 (213)
T cd03259 76 MVFQDYALFPHLTVAENIAFGLKLRGVPKAEIRARVRELLELVGLEGLLN-----------RYPHELSGGQQQRVALARA 144 (213)
T ss_pred EEcCchhhccCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhhhh-----------cChhhCCHHHHHHHHHHHH
Confidence 9999999886 6999999764221 11 233455555555544433 3346799999999999999
Q ss_pred HccCCCEEEeeCCCCCCCHHHHHHHHHHHHHhc--CCceEEEEecCchhhhc-cCEEEEEeCCEEEEec
Q 001411 988 ILKNPSILLLDEATSALDTASENLIQEALDKLM--EGRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIG 1053 (1082)
Q Consensus 988 lL~~~~ILlLDEaTS~LD~~te~~I~~~l~~~~--~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~G 1053 (1082)
|+++|++|||||||++||+.+.+.+.+.|++.. .++|||++||+++.+.. ||+|++|++|++++.|
T Consensus 145 l~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~g 213 (213)
T cd03259 145 LAREPSLLLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQEEALALADRIAVMNEGRIVQVG 213 (213)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhcCEEEEEECCEEEecC
Confidence 999999999999999999999999999999874 37899999999999865 9999999999999875
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-42 Score=382.44 Aligned_cols=219 Identities=34% Similarity=0.555 Sum_probs=185.5
Q ss_pred EEEeEEEECCCCCCcccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCccCCCCCHHHH----hc
Q 001411 836 ELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSL----RR 911 (1082)
Q Consensus 836 ~~~~Vs~~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~l----R~ 911 (1082)
.++||+++|. +.++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+...+ ++
T Consensus 26 ~~~~~~~~~~---~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~~ 102 (269)
T cd03294 26 SKEEILKKTG---QTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRK 102 (269)
T ss_pred hhhhhhhhcC---CceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccChhhhhhhhcC
Confidence 4567777775 3468999999999999999999999999999999999999999999999999988765543 46
Q ss_pred ceEEEcccCcccc-ccHHHHhccCCC--CC----CHHHHHHHHHHhcHHHHHhhCcccccccccCCCCCCChhHHHHHHH
Q 001411 912 KIGLVQQEPALFS-TTIYENIKYGNE--DA----SEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAI 984 (1082)
Q Consensus 912 ~i~~VpQdp~Lf~-gTIreNl~~~~~--~~----~d~ei~~al~~a~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlaL 984 (1082)
+++|+||++.+|. .|+++|+.++.. .. .++++.++++.+++.+++.+.| .+||||||||++|
T Consensus 103 ~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~Gq~qrv~l 171 (269)
T cd03294 103 KISMVFQSFALLPHRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEHKYP-----------DELSGGMQQRVGL 171 (269)
T ss_pred cEEEEecCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCCc-----------ccCCHHHHHHHHH
Confidence 8999999999885 699999976421 11 1234566677777766554433 4799999999999
Q ss_pred HHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHhc--CCceEEEEecCchhhhc-cCEEEEEeCCEEEEecChHHHhhh
Q 001411 985 ARAILKNPSILLLDEATSALDTASENLIQEALDKLM--EGRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGSHEQLLRK 1061 (1082)
Q Consensus 985 ARAlL~~~~ILlLDEaTS~LD~~te~~I~~~l~~~~--~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~G~~~eLl~~ 1061 (1082)
||||+++|+||||||||++||+.+.+.+.+.|++.. .++|+|++||+++.+.. ||+|++|++|++++.|+++++++.
T Consensus 172 Aral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 251 (269)
T cd03294 172 ARALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLDEALRLGDRIAIMKDGRLVQVGTPEEILTN 251 (269)
T ss_pred HHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHHHhC
Confidence 999999999999999999999999999999999874 37899999999999865 999999999999999999999875
Q ss_pred ccchHHH
Q 001411 1062 ENGIYKQ 1068 (1082)
Q Consensus 1062 ~~g~f~~ 1068 (1082)
+...|.+
T Consensus 252 ~~~~~~~ 258 (269)
T cd03294 252 PANDYVR 258 (269)
T ss_pred cCcHHHH
Confidence 5554544
|
This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-42 Score=377.07 Aligned_cols=218 Identities=35% Similarity=0.576 Sum_probs=184.2
Q ss_pred EEEEeEEEECCCCCCcccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCccCCCCCHHHHhcceE
Q 001411 835 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRKIG 914 (1082)
Q Consensus 835 I~~~~Vs~~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR~~i~ 914 (1082)
++++||+++|+. ..++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+...+|++++
T Consensus 1 l~~~~l~~~~~~--~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 78 (242)
T cd03295 1 IEFENVTKRYGG--GKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRRKIG 78 (242)
T ss_pred CEEEEEEEEeCC--cceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcCChHHhhcceE
Confidence 478999999963 146999999999999999999999999999999999999999999999999999888888899999
Q ss_pred EEcccCcccc-ccHHHHhccCCC--CCC----HHHHHHHHHHhcHHHHHhhCcccccccccCCCCCCChhHHHHHHHHHH
Q 001411 915 LVQQEPALFS-TTIYENIKYGNE--DAS----EIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARA 987 (1082)
Q Consensus 915 ~VpQdp~Lf~-gTIreNl~~~~~--~~~----d~ei~~al~~a~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlaLARA 987 (1082)
|+||+|.+|+ .|+++|+.++.. ..+ ++++.++++..++.+ +......+.+||||||||++||||
T Consensus 79 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~---------~~~~~~~~~~LS~G~~qrv~lara 149 (242)
T cd03295 79 YVIQQIGLFPHMTVEENIALVPKLLKWPKEKIRERADELLALVGLDP---------AEFADRYPHELSGGQQQRVGVARA 149 (242)
T ss_pred EEccCccccCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCc---------HHHHhcChhhCCHHHHHHHHHHHH
Confidence 9999999996 699999976421 111 122333444443321 012344557899999999999999
Q ss_pred HccCCCEEEeeCCCCCCCHHHHHHHHHHHHHhcC--CceEEEEecCchhhhc-cCEEEEEeCCEEEEecChHHHhhhcc
Q 001411 988 ILKNPSILLLDEATSALDTASENLIQEALDKLME--GRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGSHEQLLRKEN 1063 (1082)
Q Consensus 988 lL~~~~ILlLDEaTS~LD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~G~~~eLl~~~~ 1063 (1082)
++++|++|||||||++||+.+.+.+.+.|++..+ ++|+|++||+++.+.. ||+|++|++|++++.|+++++.++..
T Consensus 150 l~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~ 228 (242)
T cd03295 150 LAADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQVGTPDEILRSPA 228 (242)
T ss_pred HhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHHcCCC
Confidence 9999999999999999999999999999998753 7999999999998755 99999999999999999999976433
|
ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14247 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-42 Score=378.72 Aligned_cols=226 Identities=29% Similarity=0.469 Sum_probs=191.1
Q ss_pred cEEEEeEEEECCCCCCcccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccC-----CccEEEECCccCCCCCHHH
Q 001411 834 NIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDP-----ISGTVLIDGYDIRTLNLRS 908 (1082)
Q Consensus 834 ~I~~~~Vs~~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p-----~~G~I~idG~di~~i~~~~ 908 (1082)
.|+++||+++|+ +.++|+|+||+|++||++||+|+||||||||+++|.|+++| ++|+|.+||.++...+...
T Consensus 3 ~l~~~~l~~~~~---~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~ 79 (250)
T PRK14247 3 KIEIRDLKVSFG---QVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIE 79 (250)
T ss_pred eEEEEeeEEEEC---CeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHH
Confidence 489999999996 34699999999999999999999999999999999999974 6999999999998888888
Q ss_pred HhcceEEEcccCccc-cccHHHHhccCCC--C--CC----HHHHHHHHHHhcHHHHHhhCcccccccccCCCCCCChhHH
Q 001411 909 LRRKIGLVQQEPALF-STTIYENIKYGNE--D--AS----EIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQK 979 (1082)
Q Consensus 909 lR~~i~~VpQdp~Lf-~gTIreNl~~~~~--~--~~----d~ei~~al~~a~l~~~i~~lp~gldt~v~e~G~~LSgGQr 979 (1082)
+|++|+|+||+|.+| ..|+++|+.++.. . .. ++++.++++.+++.+.+. ..+| ....+||||||
T Consensus 80 ~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~---~~~~----~~~~~LSgG~~ 152 (250)
T PRK14247 80 LRRRVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEVK---DRLD----APAGKLSGGQQ 152 (250)
T ss_pred HhccEEEEeccCccCCCCcHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcchh---hhhc----CCcccCCHHHH
Confidence 999999999999755 6799999976421 0 11 234566677776644322 1233 33467999999
Q ss_pred HHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhh-ccCEEEEEeCCEEEEecChHHH
Q 001411 980 QRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLMEGRTTIMVAHRLSTIR-NADKIAVLQQGKVAEIGSHEQL 1058 (1082)
Q Consensus 980 QrlaLARAlL~~~~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~-~~DrI~Vl~~G~ive~G~~~eL 1058 (1082)
||++|||||+++|+||||||||++||+.+.+.+.+.|++..+++|+|+|||+++.+. .||+|++|++|++++.|+++++
T Consensus 153 qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 232 (250)
T PRK14247 153 QRLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELKKDMTIVLVTHFPQQAARISDYVAFLYKGQIVEWGPTREV 232 (250)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCeEEEECCHHHH
Confidence 999999999999999999999999999999999999999867899999999999986 5999999999999999999999
Q ss_pred hhhccchHHHH
Q 001411 1059 LRKENGIYKQL 1069 (1082)
Q Consensus 1059 l~~~~g~f~~l 1069 (1082)
.+.+...+.+.
T Consensus 233 ~~~~~~~~~~~ 243 (250)
T PRK14247 233 FTNPRHELTEK 243 (250)
T ss_pred HcCCccHHHHH
Confidence 86544444433
|
|
| >PRK14259 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-42 Score=379.54 Aligned_cols=221 Identities=32% Similarity=0.523 Sum_probs=188.2
Q ss_pred ccEEEEeEEEECCCCCCcccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccc-----CCccEEEECCccCCC--CC
Q 001411 833 GNIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYD-----PISGTVLIDGYDIRT--LN 905 (1082)
Q Consensus 833 g~I~~~~Vs~~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~-----p~~G~I~idG~di~~--i~ 905 (1082)
..|+++||+++|+ +.++|+|+||+|++||++||+|+||||||||+++|+|+++ |++|+|.+||.++.. .+
T Consensus 12 ~~l~i~nl~~~~~---~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~~ 88 (269)
T PRK14259 12 IIISLQNVTISYG---TFEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVD 88 (269)
T ss_pred ceEEEEeEEEEEC---CEEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccCC
Confidence 4699999999996 3469999999999999999999999999999999999987 589999999999863 56
Q ss_pred HHHHhcceEEEcccCccccccHHHHhccCCCC--C---CHHHHHHHHHHhcHHHHHhhCcccccccccCCCCCCChhHHH
Q 001411 906 LRSLRRKIGLVQQEPALFSTTIYENIKYGNED--A---SEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQ 980 (1082)
Q Consensus 906 ~~~lR~~i~~VpQdp~Lf~gTIreNl~~~~~~--~---~d~ei~~al~~a~l~~~i~~lp~gldt~v~e~G~~LSgGQrQ 980 (1082)
...+|++++|+||+|.+|+.|++||+.++... . .++++.++++.+++...+ +........+|||||||
T Consensus 89 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l-------~~~~~~~~~~LS~G~~q 161 (269)
T PRK14259 89 PVEVRRRIGMVFQQPNPFPKSIYENIAFGARINGYTGDMDELVERSLRKAAVWDEC-------KDKLNESGYSLSGGQQQ 161 (269)
T ss_pred HHHHhhceEEEccCCccchhhHHHHHhhhhhhcCCcHHHHHHHHHHHHHhCCcchh-------hhhhCCCcccCCHHHHH
Confidence 67889999999999999999999999875321 1 133455566666554322 22334455679999999
Q ss_pred HHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhc-cCEEEEEeC-----------CE
Q 001411 981 RVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLMEGRTTIMVAHRLSTIRN-ADKIAVLQQ-----------GK 1048 (1082)
Q Consensus 981 rlaLARAlL~~~~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~-~DrI~Vl~~-----------G~ 1048 (1082)
|++|||||+++|++|||||||++||+.+.+.+.+.|++..+++|+|+|||+++.+.. ||+|++|++ |+
T Consensus 162 rl~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~~~~~~~~~g~~g~ 241 (269)
T PRK14259 162 RLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKKNFTIVIVTHNMQQAVRVSDMTAFFNAEEVEGGSGGKVGY 241 (269)
T ss_pred HHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeccccccccccccce
Confidence 999999999999999999999999999999999999988667899999999999865 999999996 67
Q ss_pred EEEecChHHHhhhcc
Q 001411 1049 VAEIGSHEQLLRKEN 1063 (1082)
Q Consensus 1049 ive~G~~~eLl~~~~ 1063 (1082)
++|.|++++++..+.
T Consensus 242 ~~~~~~~~~~~~~~~ 256 (269)
T PRK14259 242 LVEFNETKKIFNSPK 256 (269)
T ss_pred EEEeCCHHHHHhCcC
Confidence 999999999986443
|
|
| >PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-42 Score=392.83 Aligned_cols=212 Identities=32% Similarity=0.540 Sum_probs=184.1
Q ss_pred cEEEEEEEEECCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHHhCCCCCCcEEEECCeeCCCCCHHHHhhhce
Q 001411 205 QIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMG 284 (1082)
Q Consensus 205 ~i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 284 (1082)
.|+++|++++|++ ..+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+.++. ++.|+
T Consensus 6 ~l~~~~l~~~~~~--~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~--~r~ig 81 (351)
T PRK11432 6 FVVLKNITKRFGS--NTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSIQ--QRDIC 81 (351)
T ss_pred EEEEEeEEEEECC--eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHH--HCCEE
Confidence 5999999999974 3489999999999999999999999999999999999999999999999999876543 56899
Q ss_pred EEccCCCcChh-cHHHHHhcCCCC--CC----HHHHHHHHHHhchHHHHhcCCCCccccccCCCCCCChHHHHHHHHHHh
Q 001411 285 LVSQEPALFAT-SIANNILLGKED--AS----MDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARA 357 (1082)
Q Consensus 285 ~v~Q~~~l~~~-ti~~ni~~g~~~--~~----~~~~~~~~~~~~~~~~i~~lp~g~~t~~g~~g~~LSgGqkqri~lARa 357 (1082)
||+|++.+|+. |++|||.|+... .+ .+++.++++..++.+..+ .....|||||||||+||||
T Consensus 82 ~vfQ~~~lfp~~tv~eNi~~~l~~~~~~~~~~~~~v~~~l~~~gl~~~~~-----------r~~~~LSgGq~QRVaLARa 150 (351)
T PRK11432 82 MVFQSYALFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELVDLAGFED-----------RYVDQISGGQQQRVALARA 150 (351)
T ss_pred EEeCCcccCCCCCHHHHHHHHHhHcCCCHHHHHHHHHHHHHHcCCchhhc-----------CChhhCCHHHHHHHHHHHH
Confidence 99999999976 999999987431 11 234555566555544433 3446899999999999999
Q ss_pred cccCCCeeEEeCcccCCCHHHHHHHHHHHHHHcC--CCeEEEEccCccccc-cCCEEEEEeCCEEEEecCchhhhhc
Q 001411 358 VLRNPKILLLDEATSALDAESELIVQRALEKIMS--NRTTIVVAHRLSTVR-DVDTIMVLKNGQVVESGTHVDLISK 431 (1082)
Q Consensus 358 l~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~vtH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~~ 431 (1082)
|+.+|++||||||||+||+.+...+.+.|+++.+ ++|+|+|||+++.+. .||+|++|++|++++.|+++++..+
T Consensus 151 L~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~e~~~laD~i~vm~~G~i~~~g~~~~~~~~ 227 (351)
T PRK11432 151 LILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQSEAFAVSDTVIVMNKGKIMQIGSPQELYRQ 227 (351)
T ss_pred HHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 9999999999999999999999999999998754 789999999999874 5899999999999999999998764
|
|
| >cd03291 ABCC_CFTR1 The CFTR subfamily domain 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-42 Score=374.90 Aligned_cols=220 Identities=30% Similarity=0.491 Sum_probs=195.6
Q ss_pred ccccEEEEeEEEECCCCCCcccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCccCCCCCHHHHh
Q 001411 831 IKGNIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLR 910 (1082)
Q Consensus 831 ~~g~I~~~~Vs~~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR 910 (1082)
..+.|+++|++++. .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||
T Consensus 36 ~~~~l~i~nls~~~-----~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~p~~G~I~i~g------------ 98 (282)
T cd03291 36 DDNNLFFSNLCLVG-----APVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSG------------ 98 (282)
T ss_pred CCCeEEEEEEEEec-----ccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECC------------
Confidence 45579999999852 3599999999999999999999999999999999999999999999998
Q ss_pred cceEEEcccCccccccHHHHhccCCCCCCHHHHHHHHHHhcHHHHHhhCcccccccccCCCCCCChhHHHHHHHHHHHcc
Q 001411 911 RKIGLVQQEPALFSTTIYENIKYGNEDASEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILK 990 (1082)
Q Consensus 911 ~~i~~VpQdp~Lf~gTIreNl~~~~~~~~d~ei~~al~~a~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlaLARAlL~ 990 (1082)
+++|+||++.+|++|+++|+.++.. ..+.++.++++.+++.+.+..+|.++++.+++.+.+||||||||++|||||++
T Consensus 99 -~i~yv~q~~~l~~~tv~enl~~~~~-~~~~~~~~~l~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~qrv~lAraL~~ 176 (282)
T cd03291 99 -RISFSSQFSWIMPGTIKENIIFGVS-YDEYRYKSVVKACQLEEDITKFPEKDNTVLGEGGITLSGGQRARISLARAVYK 176 (282)
T ss_pred -EEEEEeCcccccccCHHHHhhcccc-cCHHHHHHHHHHhCCHHHHHhccccccceecCCCCcCCHHHHHHHHHHHHHhc
Confidence 3999999999999999999987532 33445667788888889999999999999999999999999999999999999
Q ss_pred CCCEEEeeCCCCCCCHHHHHHHHHHH-HHhcCCceEEEEecCchhhhccCEEEEEeCCEEEEecChHHHhhhccchHHHH
Q 001411 991 NPSILLLDEATSALDTASENLIQEAL-DKLMEGRTTIMVAHRLSTIRNADKIAVLQQGKVAEIGSHEQLLRKENGIYKQL 1069 (1082)
Q Consensus 991 ~~~ILlLDEaTS~LD~~te~~I~~~l-~~~~~~~TvI~IaHrl~ti~~~DrI~Vl~~G~ive~G~~~eLl~~~~g~f~~l 1069 (1082)
+|+||||||||++||+++...+.+.+ ++..+++|+|+|||+++.+..||+|++|++|++++.|+++++.+. ...|.+.
T Consensus 177 ~p~iLiLDEPt~gLD~~~~~~l~~~ll~~~~~~~tIiiisH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~-~~~~~~~ 255 (282)
T cd03291 177 DADLYLLDSPFGYLDVFTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQSL-RPDFSSK 255 (282)
T ss_pred CCCEEEEECCCccCCHHHHHHHHHHHHHHhhCCCEEEEEeCChHHHHhCCEEEEEECCEEEEECCHHHHHhc-chHHHHH
Confidence 99999999999999999999888754 555568899999999999988999999999999999999999863 4455544
Q ss_pred H
Q 001411 1070 I 1070 (1082)
Q Consensus 1070 ~ 1070 (1082)
+
T Consensus 256 ~ 256 (282)
T cd03291 256 L 256 (282)
T ss_pred H
Confidence 4
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-42 Score=395.09 Aligned_cols=217 Identities=33% Similarity=0.539 Sum_probs=186.8
Q ss_pred cEEEEeEEEECCCCCCcccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCccCCCCCHHHHhcce
Q 001411 834 NIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRKI 913 (1082)
Q Consensus 834 ~I~~~~Vs~~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR~~i 913 (1082)
.|+++|++++|+ +.++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++...+. .+++|
T Consensus 3 ~l~i~~l~~~~~---~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~~~~--~~~~i 77 (369)
T PRK11000 3 SVTLRNVTKAYG---DVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPP--AERGV 77 (369)
T ss_pred EEEEEEEEEEeC---CeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCH--hHCCE
Confidence 389999999996 3469999999999999999999999999999999999999999999999999987665 35789
Q ss_pred EEEcccCccccc-cHHHHhccCCC--CCC----HHHHHHHHHHhcHHHHHhhCcccccccccCCCCCCChhHHHHHHHHH
Q 001411 914 GLVQQEPALFST-TIYENIKYGNE--DAS----EIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIAR 986 (1082)
Q Consensus 914 ~~VpQdp~Lf~g-TIreNl~~~~~--~~~----d~ei~~al~~a~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlaLAR 986 (1082)
+||||++.+|+. |+++|+.++.. ..+ ++++.++++..++.++..+ ...+||||||||++|||
T Consensus 78 ~~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~~-----------~~~~LSgGq~QRvaLAr 146 (369)
T PRK11000 78 GMVFQSYALYPHLSVAENMSFGLKLAGAKKEEINQRVNQVAEVLQLAHLLDR-----------KPKALSGGQRQRVAIGR 146 (369)
T ss_pred EEEeCCcccCCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhhhcC-----------ChhhCCHHHHHHHHHHH
Confidence 999999999975 99999987532 122 2345566666666554433 33579999999999999
Q ss_pred HHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHhcC--CceEEEEecCchhhhc-cCEEEEEeCCEEEEecChHHHhhhcc
Q 001411 987 AILKNPSILLLDEATSALDTASENLIQEALDKLME--GRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGSHEQLLRKEN 1063 (1082)
Q Consensus 987 AlL~~~~ILlLDEaTS~LD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~G~~~eLl~~~~ 1063 (1082)
||+++|++||||||||+||+.+.+.+.+.|++..+ +.|+|+|||+++.+.. ||+|++|++|++++.|+|+++...+.
T Consensus 147 aL~~~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~~~~~~~d~i~vl~~G~i~~~g~~~~i~~~p~ 226 (369)
T PRK11000 147 TLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYPA 226 (369)
T ss_pred HHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCcc
Confidence 99999999999999999999999999999998753 7899999999998865 99999999999999999999987655
Q ss_pred chH
Q 001411 1064 GIY 1066 (1082)
Q Consensus 1064 g~f 1066 (1082)
..|
T Consensus 227 ~~~ 229 (369)
T PRK11000 227 NRF 229 (369)
T ss_pred cHH
Confidence 444
|
|
| >PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-42 Score=387.41 Aligned_cols=228 Identities=26% Similarity=0.434 Sum_probs=189.5
Q ss_pred cEEEEeEEEECCCCC----------CcccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCccCCC
Q 001411 834 NIELRNVSFKYPVRP----------DITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRT 903 (1082)
Q Consensus 834 ~I~~~~Vs~~Y~~~~----------~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~ 903 (1082)
-|+++|++++|+.+. ..++++||||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++.+
T Consensus 8 ~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~G~~i~~ 87 (331)
T PRK15079 8 LLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLLG 87 (331)
T ss_pred eEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCCcEEEECCEECCc
Confidence 489999999996321 2469999999999999999999999999999999999999999999999999998
Q ss_pred CCHH---HHhcceEEEcccC--ccc-cccHHHHhccCC----CCCCHHH----HHHHHHHhcHHHHHhhCcccccccccC
Q 001411 904 LNLR---SLRRKIGLVQQEP--ALF-STTIYENIKYGN----EDASEIE----LMKATKAANAHGFISRMPEGYQSHVGD 969 (1082)
Q Consensus 904 i~~~---~lR~~i~~VpQdp--~Lf-~gTIreNl~~~~----~~~~d~e----i~~al~~a~l~~~i~~lp~gldt~v~e 969 (1082)
++.. .+|++|+||+|+| .+| ..||.+|+.++. +..+.++ +.++++.+++.+ .....
T Consensus 88 ~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~----------~~~~~ 157 (331)
T PRK15079 88 MKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLP----------NLINR 157 (331)
T ss_pred CCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCCh----------HHhcC
Confidence 8754 4678999999999 477 479999986421 1233333 334444444421 11233
Q ss_pred CCCCCChhHHHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHhcC--CceEEEEecCchhhhc-cCEEEEEeC
Q 001411 970 RGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLME--GRTTIMVAHRLSTIRN-ADKIAVLQQ 1046 (1082)
Q Consensus 970 ~G~~LSgGQrQrlaLARAlL~~~~ILlLDEaTS~LD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~~-~DrI~Vl~~ 1046 (1082)
...+||||||||++|||||+.+|++||+||||++||..+...|.+.|++..+ +.|+|+|||+++.+.. ||||+||++
T Consensus 158 ~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl~~~~~~~dri~vl~~ 237 (331)
T PRK15079 158 YPHEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLAVVKHISDRVLVMYL 237 (331)
T ss_pred CcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEEC
Confidence 4567999999999999999999999999999999999999999999998753 7899999999999976 999999999
Q ss_pred CEEEEecChHHHhhhccchHHH-HHH
Q 001411 1047 GKVAEIGSHEQLLRKENGIYKQ-LIR 1071 (1082)
Q Consensus 1047 G~ive~G~~~eLl~~~~g~f~~-l~~ 1071 (1082)
|+|+|.|+++++++++...|.+ ++.
T Consensus 238 G~ive~g~~~~i~~~~~~py~~~l~~ 263 (331)
T PRK15079 238 GHAVELGTYDEVYHNPLHPYTKALMS 263 (331)
T ss_pred CEEEEEcCHHHHHcCCCCHHHHHHHh
Confidence 9999999999998766566765 443
|
|
| >PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-42 Score=384.59 Aligned_cols=216 Identities=31% Similarity=0.510 Sum_probs=182.8
Q ss_pred EEEEeEEEECCCCC--CcccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCccCCC----CCHHH
Q 001411 835 IELRNVSFKYPVRP--DITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRT----LNLRS 908 (1082)
Q Consensus 835 I~~~~Vs~~Y~~~~--~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~----i~~~~ 908 (1082)
|+++||+++|+... ..++|+||||+|++||++||+|+||||||||+++|.|+++|++|+|.+||+++.. .+...
T Consensus 3 l~~~~l~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (290)
T PRK13634 3 ITFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLKP 82 (290)
T ss_pred EEEEEEEEEECCCCcccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHH
Confidence 88999999996321 1469999999999999999999999999999999999999999999999999863 34667
Q ss_pred HhcceEEEcccC--ccccccHHHHhccCCC--CCCHHH----HHHHHHHhcHHHHHhhCcccccccccCCCCCCChhHHH
Q 001411 909 LRRKIGLVQQEP--ALFSTTIYENIKYGNE--DASEIE----LMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQ 980 (1082)
Q Consensus 909 lR~~i~~VpQdp--~Lf~gTIreNl~~~~~--~~~d~e----i~~al~~a~l~~~i~~lp~gldt~v~e~G~~LSgGQrQ 980 (1082)
.|++++||||+| .+|+.|+++|+.++.. ..+.++ +.++++.+++.+. ........|||||||
T Consensus 83 ~~~~ig~v~q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~----------~~~~~~~~LSgGq~q 152 (290)
T PRK13634 83 LRKKVGIVFQFPEHQLFEETVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPEE----------LLARSPFELSGGQMR 152 (290)
T ss_pred HHhhEEEEeeCchhhhhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCChh----------hhhCCcccCCHHHHH
Confidence 888999999998 6888999999987522 123332 3344444444311 123345679999999
Q ss_pred HHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHhcC--CceEEEEecCchhhh-ccCEEEEEeCCEEEEecChHH
Q 001411 981 RVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLME--GRTTIMVAHRLSTIR-NADKIAVLQQGKVAEIGSHEQ 1057 (1082)
Q Consensus 981 rlaLARAlL~~~~ILlLDEaTS~LD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~-~~DrI~Vl~~G~ive~G~~~e 1057 (1082)
|++|||||+.+|++|||||||++||+.+...+.+.|++..+ +.|||+|||+++.+. .||||++|++|++++.|++++
T Consensus 153 rv~lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~~~~~~~drv~~l~~G~i~~~g~~~~ 232 (290)
T PRK13634 153 RVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSMEDAARYADQIVVMHKGTVFLQGTPRE 232 (290)
T ss_pred HHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHH
Confidence 99999999999999999999999999999999999998753 789999999999985 499999999999999999999
Q ss_pred Hhh
Q 001411 1058 LLR 1060 (1082)
Q Consensus 1058 Ll~ 1060 (1082)
+.+
T Consensus 233 ~~~ 235 (290)
T PRK13634 233 IFA 235 (290)
T ss_pred Hhc
Confidence 875
|
|
| >PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-42 Score=381.56 Aligned_cols=216 Identities=36% Similarity=0.577 Sum_probs=186.5
Q ss_pred cEEEEEEEEECCCC-CCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHHhCCCCCCcEEEECCeeCCCCCHHHHhhhc
Q 001411 205 QIEFSEVCFAYPSR-PHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQM 283 (1082)
Q Consensus 205 ~i~~~~v~~~y~~~-~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i 283 (1082)
.++++|++++|++. ..++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++...+...+++.+
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i 83 (279)
T PRK13650 4 IIEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIRHKI 83 (279)
T ss_pred eEEEEeEEEEcCCCCcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHHhhc
Confidence 48999999999742 23499999999999999999999999999999999999999999999999999877777888899
Q ss_pred eEEccCCC--cChhcHHHHHhcCCCC--CC----HHHHHHHHHHhchHHHHhcCCCCccccccCCCCCCChHHHHHHHHH
Q 001411 284 GLVSQEPA--LFATSIANNILLGKED--AS----MDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIA 355 (1082)
Q Consensus 284 ~~v~Q~~~--l~~~ti~~ni~~g~~~--~~----~~~~~~~~~~~~~~~~i~~lp~g~~t~~g~~g~~LSgGqkqri~lA 355 (1082)
+||+|+|. ++..||+|||.++... .+ .+++.++++..++.++.++ ...+||||||||++||
T Consensus 84 ~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~-----------~~~~LSgGq~qrv~lA 152 (279)
T PRK13650 84 GMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKERVNEALELVGMQDFKER-----------EPARLSGGQKQRVAIA 152 (279)
T ss_pred eEEEcChHHhcccccHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCCHhHhhC-----------CcccCCHHHHHHHHHH
Confidence 99999984 5567999999987432 12 2345555566555544443 3468999999999999
Q ss_pred HhcccCCCeeEEeCcccCCCHHHHHHHHHHHHHHcC--CCeEEEEccCccccccCCEEEEEeCCEEEEecCchhhhhc
Q 001411 356 RAVLRNPKILLLDEATSALDAESELIVQRALEKIMS--NRTTIVVAHRLSTVRDVDTIMVLKNGQVVESGTHVDLISK 431 (1082)
Q Consensus 356 Ral~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~vtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~ 431 (1082)
|||+.+|++|||||||++||+.+.+.+.+.|+++.+ ++|+|++||+++.+..||+|++|++|++++.|+++++...
T Consensus 153 ral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~ 230 (279)
T PRK13650 153 GAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLDEVALSDRVLVMKNGQVESTSTPRELFSR 230 (279)
T ss_pred HHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEEECCHHHHHcC
Confidence 999999999999999999999999999999998753 7899999999999878999999999999999998887654
|
|
| >TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-42 Score=376.92 Aligned_cols=218 Identities=31% Similarity=0.521 Sum_probs=184.7
Q ss_pred EEEEeEEEECCCCCCcccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCccCCCCC---------
Q 001411 835 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLN--------- 905 (1082)
Q Consensus 835 I~~~~Vs~~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~--------- 905 (1082)
|+++||+++|+ +.++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++..++
T Consensus 1 i~~~~l~~~~~---~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~ 77 (252)
T TIGR03005 1 VRFSDVTKRFG---ILTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPLVPA 77 (252)
T ss_pred CEEEEEEEEeC---CeeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccccccccccccc
Confidence 57999999996 346999999999999999999999999999999999999999999999999987653
Q ss_pred ----HHHHhcceEEEcccCcccc-ccHHHHhccCCC---CCC----HHHHHHHHHHhcHHHHHhhCcccccccccCCCCC
Q 001411 906 ----LRSLRRKIGLVQQEPALFS-TTIYENIKYGNE---DAS----EIELMKATKAANAHGFISRMPEGYQSHVGDRGVQ 973 (1082)
Q Consensus 906 ----~~~lR~~i~~VpQdp~Lf~-gTIreNl~~~~~---~~~----d~ei~~al~~a~l~~~i~~lp~gldt~v~e~G~~ 973 (1082)
...+|++++|++|++.+|. .|+++|+.++.. ... ++++.++++..++.++. ......
T Consensus 78 ~~~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~-----------~~~~~~ 146 (252)
T TIGR03005 78 DEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLADKA-----------DHMPAQ 146 (252)
T ss_pred chhHHHHHhhCeEEEecCcccCCCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHh-----------hcChhh
Confidence 2467889999999999885 799999986311 111 23344555555554433 334467
Q ss_pred CChhHHHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHhcC--CceEEEEecCchhhhc-cCEEEEEeCCEEE
Q 001411 974 LSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLME--GRTTIMVAHRLSTIRN-ADKIAVLQQGKVA 1050 (1082)
Q Consensus 974 LSgGQrQrlaLARAlL~~~~ILlLDEaTS~LD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~~-~DrI~Vl~~G~iv 1050 (1082)
||||||||++|||||+++|++|||||||++||+.+...+.+.|++..+ ++|+|+|||+++.+.. ||++++|++|+++
T Consensus 147 LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~ 226 (252)
T TIGR03005 147 LSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMGFAREFADRVCFFDKGRIV 226 (252)
T ss_pred cCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEE
Confidence 999999999999999999999999999999999999999999998753 7899999999999865 9999999999999
Q ss_pred EecChHHHhhhccchH
Q 001411 1051 EIGSHEQLLRKENGIY 1066 (1082)
Q Consensus 1051 e~G~~~eLl~~~~g~f 1066 (1082)
+.|+++++.+.+...+
T Consensus 227 ~~g~~~~~~~~~~~~~ 242 (252)
T TIGR03005 227 EQGKPDEIFRQPKEER 242 (252)
T ss_pred EeCCHHHHhcCCCcHH
Confidence 9999999986544333
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. |
| >PRK14237 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-42 Score=378.50 Aligned_cols=220 Identities=30% Similarity=0.491 Sum_probs=189.4
Q ss_pred ccEEEEeEEEECCCCCCcccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccc-----CCccEEEECCccCCC--CC
Q 001411 833 GNIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYD-----PISGTVLIDGYDIRT--LN 905 (1082)
Q Consensus 833 g~I~~~~Vs~~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~-----p~~G~I~idG~di~~--i~ 905 (1082)
..|+++||+++|+ +.++|+|+||+|++||.+||+|+||||||||+++|.|+++ |++|+|.+||.++.. .+
T Consensus 19 ~~l~~~nl~~~~~---~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~ 95 (267)
T PRK14237 19 IALSTKDLHVYYG---KKEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEIN 95 (267)
T ss_pred eEEEEeeEEEEEC---CeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccccCC
Confidence 4699999999995 3579999999999999999999999999999999999997 579999999999864 34
Q ss_pred HHHHhcceEEEcccCccccccHHHHhccCCCC---CC----HHHHHHHHHHhcHHHHHhhCcccccccccCCCCCCChhH
Q 001411 906 LRSLRRKIGLVQQEPALFSTTIYENIKYGNED---AS----EIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQ 978 (1082)
Q Consensus 906 ~~~lR~~i~~VpQdp~Lf~gTIreNl~~~~~~---~~----d~ei~~al~~a~l~~~i~~lp~gldt~v~e~G~~LSgGQ 978 (1082)
...+|+.++|+||++.+|..|+++|+.++... .+ ++++.++++..++.+.+. ...+..+..|||||
T Consensus 96 ~~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~-------~~~~~~~~~LS~G~ 168 (267)
T PRK14237 96 VYEMRKHIGMVFQRPNPFAKSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQVK-------DDLHKSALTLSGGQ 168 (267)
T ss_pred hHHHhcceEEEecCCccccccHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchhh-------hhhcCCcccCCHHH
Confidence 66789999999999999999999999874211 11 234555666666654432 23445667899999
Q ss_pred HHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhc-cCEEEEEeCCEEEEecChHH
Q 001411 979 KQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLMEGRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGSHEQ 1057 (1082)
Q Consensus 979 rQrlaLARAlL~~~~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~G~~~e 1057 (1082)
|||++||||++++|++|||||||++||+.+.+.+.+.|++..++.|+|+|||+++.+.. ||+|++|++|++++.|++++
T Consensus 169 ~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 248 (267)
T PRK14237 169 QQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELKKNYTIIIVTHNMQQAARASDYTAFFYLGDLIEYDKTRN 248 (267)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhcCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999999998777899999999999865 99999999999999999999
Q ss_pred Hhhhc
Q 001411 1058 LLRKE 1062 (1082)
Q Consensus 1058 Ll~~~ 1062 (1082)
+...+
T Consensus 249 ~~~~~ 253 (267)
T PRK14237 249 IFTNP 253 (267)
T ss_pred HhcCC
Confidence 97643
|
|
| >PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-42 Score=379.59 Aligned_cols=224 Identities=27% Similarity=0.473 Sum_probs=187.6
Q ss_pred cEEEEeEEEECCCCCCcccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCccCCCCCHH---HHh
Q 001411 834 NIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLR---SLR 910 (1082)
Q Consensus 834 ~I~~~~Vs~~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~---~lR 910 (1082)
.|+++||+++|+ +.++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++..++.. .+|
T Consensus 7 ~l~~~~l~~~~~---~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~ 83 (269)
T PRK11831 7 LVDMRGVSFTRG---NRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYTVR 83 (269)
T ss_pred eEEEeCeEEEEC---CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccChhhHHHHh
Confidence 489999999996 34699999999999999999999999999999999999999999999999999876643 457
Q ss_pred cceEEEcccCccccc-cHHHHhccCCC---CCCH----HHHHHHHHHhcHHHHHhhCcccccccccCCCCCCChhHHHHH
Q 001411 911 RKIGLVQQEPALFST-TIYENIKYGNE---DASE----IELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRV 982 (1082)
Q Consensus 911 ~~i~~VpQdp~Lf~g-TIreNl~~~~~---~~~d----~ei~~al~~a~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrl 982 (1082)
++++|+||++.+|++ |+++|+.++.. ..+. +.+.++++..++.+. ......+||||||||+
T Consensus 84 ~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~-----------~~~~~~~LSgGq~qrv 152 (269)
T PRK11831 84 KRMSMLFQSGALFTDMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLRGA-----------AKLMPSELSGGMARRA 152 (269)
T ss_pred hcEEEEecccccCCCCCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHcCChhh-----------hhCChhhCCHHHHHHH
Confidence 889999999999986 99999976321 1122 223344444444332 2233467999999999
Q ss_pred HHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHhcC--CceEEEEecCchhhhc-cCEEEEEeCCEEEEecChHHHh
Q 001411 983 AIARAILKNPSILLLDEATSALDTASENLIQEALDKLME--GRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGSHEQLL 1059 (1082)
Q Consensus 983 aLARAlL~~~~ILlLDEaTS~LD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~G~~~eLl 1059 (1082)
+|||||+++|++|||||||++||+.+.+.+.+.|++..+ ++|+|+|||+++.+.. ||+|++|++|++++.|+++++.
T Consensus 153 ~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 232 (269)
T PRK11831 153 ALARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVPEVLSIADHAYIVADKKIVAHGSAQALQ 232 (269)
T ss_pred HHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhhCEEEEEECCEEEEeCCHHHHh
Confidence 999999999999999999999999999999999998753 7899999999999866 9999999999999999999998
Q ss_pred hhccchHHHHHH
Q 001411 1060 RKENGIYKQLIR 1071 (1082)
Q Consensus 1060 ~~~~g~f~~l~~ 1071 (1082)
+.....+..++.
T Consensus 233 ~~~~~~~~~~~~ 244 (269)
T PRK11831 233 ANPDPRVRQFLD 244 (269)
T ss_pred cCCcHHHHHHHH
Confidence 644445555554
|
|
| >PRK13651 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-42 Score=383.85 Aligned_cols=216 Identities=28% Similarity=0.476 Sum_probs=182.3
Q ss_pred EEEEeEEEECCCCC--CcccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCccCCC---------
Q 001411 835 IELRNVSFKYPVRP--DITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRT--------- 903 (1082)
Q Consensus 835 I~~~~Vs~~Y~~~~--~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~--------- 903 (1082)
|+++||+++|+... ..++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++..
T Consensus 3 i~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 82 (305)
T PRK13651 3 IKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEKEK 82 (305)
T ss_pred EEEEEEEEEECCCCCccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEeceecccccccccccc
Confidence 89999999997321 1369999999999999999999999999999999999999999999999887632
Q ss_pred ---------------CCHHHHhcceEEEcccC--ccccccHHHHhccCCC--CCCHH----HHHHHHHHhcHH-HHHhhC
Q 001411 904 ---------------LNLRSLRRKIGLVQQEP--ALFSTTIYENIKYGNE--DASEI----ELMKATKAANAH-GFISRM 959 (1082)
Q Consensus 904 ---------------i~~~~lR~~i~~VpQdp--~Lf~gTIreNl~~~~~--~~~d~----ei~~al~~a~l~-~~i~~l 959 (1082)
.+...+|++|+||||+| .+|..|+++||.++.. ..+.+ ++.++++.+++. ++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~---- 158 (305)
T PRK13651 83 VLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDESY---- 158 (305)
T ss_pred cccccccccccccccchHHHHHhceEEEeeCcccccccccHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhh----
Confidence 13467889999999986 6888999999987532 22332 344455555542 22
Q ss_pred cccccccccCCCCCCChhHHHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEecCchhhh-c
Q 001411 960 PEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLM-EGRTTIMVAHRLSTIR-N 1037 (1082)
Q Consensus 960 p~gldt~v~e~G~~LSgGQrQrlaLARAlL~~~~ILlLDEaTS~LD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~-~ 1037 (1082)
......+||||||||++|||||+.+|++|||||||++||+.+.+.+.+.|++.. .++|||+|||+++.+. .
T Consensus 159 -------~~~~~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~ 231 (305)
T PRK13651 159 -------LQRSPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLDNVLEW 231 (305)
T ss_pred -------hhCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeeCHHHHHHh
Confidence 334456899999999999999999999999999999999999999999999874 4899999999999875 5
Q ss_pred cCEEEEEeCCEEEEecChHHHhhh
Q 001411 1038 ADKIAVLQQGKVAEIGSHEQLLRK 1061 (1082)
Q Consensus 1038 ~DrI~Vl~~G~ive~G~~~eLl~~ 1061 (1082)
||||++|++|++++.|+++++.+.
T Consensus 232 adrv~vl~~G~i~~~g~~~~~~~~ 255 (305)
T PRK13651 232 TKRTIFFKDGKIIKDGDTYDILSD 255 (305)
T ss_pred CCEEEEEECCEEEEECCHHHHhcC
Confidence 999999999999999999998764
|
|
| >PRK14244 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-42 Score=378.60 Aligned_cols=222 Identities=31% Similarity=0.542 Sum_probs=187.9
Q ss_pred EEEEeEEEECCCCCCcccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccc-----CCccEEEECCccCCCCC--HH
Q 001411 835 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYD-----PISGTVLIDGYDIRTLN--LR 907 (1082)
Q Consensus 835 I~~~~Vs~~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~-----p~~G~I~idG~di~~i~--~~ 907 (1082)
-+++||+++|+ +.++|+|+||+|++||++||+|+||||||||+++|.|++. |++|+|.++|.++...+ ..
T Consensus 6 ~~~~~l~~~~~---~~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 82 (251)
T PRK14244 6 ASVKNLNLWYG---SKQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVV 82 (251)
T ss_pred EEeeeEEEEEC---CeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccchH
Confidence 47899999996 3479999999999999999999999999999999999986 46999999999987653 34
Q ss_pred HHhcceEEEcccCccccccHHHHhccCCC--C------CCHHHHHHHHHHhcHHHHHhhCcccccccccCCCCCCChhHH
Q 001411 908 SLRRKIGLVQQEPALFSTTIYENIKYGNE--D------ASEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQK 979 (1082)
Q Consensus 908 ~lR~~i~~VpQdp~Lf~gTIreNl~~~~~--~------~~d~ei~~al~~a~l~~~i~~lp~gldt~v~e~G~~LSgGQr 979 (1082)
.+|++++|+||++.+|++|+++|+.++.. . ..++++.++++..++.+.+ .+.+...+.+||||||
T Consensus 83 ~~~~~i~~v~q~~~~~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LS~Gq~ 155 (251)
T PRK14244 83 LLRAKVGMVFQKPNPFPKSIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEEL-------GDRLKDSAFELSGGQQ 155 (251)
T ss_pred HHhhhEEEEecCcccccCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCchh-------hhHhhcChhhCCHHHH
Confidence 67899999999999999999999976411 1 1123455666666654332 1233445678999999
Q ss_pred HHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhc-cCEEEEEeCCEEEEecChHHH
Q 001411 980 QRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLMEGRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGSHEQL 1058 (1082)
Q Consensus 980 QrlaLARAlL~~~~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~G~~~eL 1058 (1082)
||++||||++++|+||||||||++||+.+.+.+.+.|++..+++|+|+|||+++.+.. ||+|++|++|++++.|+++++
T Consensus 156 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 235 (251)
T PRK14244 156 QRLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELKKNFTIIVVTHSMKQAKKVSDRVAFFQSGRIVEYNTTQEI 235 (251)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhcCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999988778999999999999865 999999999999999999999
Q ss_pred hhhccchH
Q 001411 1059 LRKENGIY 1066 (1082)
Q Consensus 1059 l~~~~g~f 1066 (1082)
.+.+...|
T Consensus 236 ~~~~~~~~ 243 (251)
T PRK14244 236 FKNPQSSK 243 (251)
T ss_pred hcCCCChH
Confidence 87555444
|
|
| >TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-42 Score=392.63 Aligned_cols=200 Identities=35% Similarity=0.545 Sum_probs=176.1
Q ss_pred ccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHHhCCCCCCcEEEECCeeCCCCCHHHH----hhhceEEccCCCcChh-
Q 001411 221 MVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWL----REQMGLVSQEPALFAT- 295 (1082)
Q Consensus 221 ~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~----~~~i~~v~Q~~~l~~~- 295 (1082)
.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...++.++ |+.|+||+|++++|+.
T Consensus 7 ~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l~~~~ 86 (363)
T TIGR01186 7 KGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFALFPHM 86 (363)
T ss_pred eeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCcCCCCC
Confidence 49999999999999999999999999999999999999999999999999999888777 7789999999999986
Q ss_pred cHHHHHhcCCCCC------CHHHHHHHHHHhchHHHHhcCCCCccccccCCCCCCChHHHHHHHHHHhcccCCCeeEEeC
Q 001411 296 SIANNILLGKEDA------SMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDE 369 (1082)
Q Consensus 296 ti~~ni~~g~~~~------~~~~~~~~~~~~~~~~~i~~lp~g~~t~~g~~g~~LSgGqkqri~lARal~~~~~illlDE 369 (1082)
||+|||.++.+.. ..+++.++++..++..+ .+....+|||||||||+|||||+.+|+|+||||
T Consensus 87 TV~eNi~~~~~~~~~~~~~~~~~~~~~l~~vgL~~~-----------~~~~p~~LSGGq~QRV~lARAL~~~p~iLLlDE 155 (363)
T TIGR01186 87 TILQNTSLGPELLGWPEQERKEKALELLKLVGLEEY-----------EHRYPDELSGGMQQRVGLARALAAEPDILLMDE 155 (363)
T ss_pred CHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCchh-----------hhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 9999999874321 12345555555555443 445556899999999999999999999999999
Q ss_pred cccCCCHHHHHHHHHHHHHHc--CCCeEEEEccCcccc-ccCCEEEEEeCCEEEEecCchhhhhc
Q 001411 370 ATSALDAESELIVQRALEKIM--SNRTTIVVAHRLSTV-RDVDTIMVLKNGQVVESGTHVDLISK 431 (1082)
Q Consensus 370 pts~LD~~~~~~i~~~l~~~~--~~~t~i~vtH~~~~~-~~~d~i~~l~~G~i~~~g~~~~l~~~ 431 (1082)
|||+||+.+++.+++.+.++. .++|+|+|||+++++ +.||+|++|++|++++.|++++++.+
T Consensus 156 P~saLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~ea~~~~drI~vl~~G~iv~~g~~~ei~~~ 220 (363)
T TIGR01186 156 AFSALDPLIRDSMQDELKKLQATLQKTIVFITHDLDEAIRIGDRIVIMKAGEIVQVGTPDEILRN 220 (363)
T ss_pred CcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEeeCCHHHHHhC
Confidence 999999999999999998874 378999999999986 45999999999999999999999875
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact |
| >PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-42 Score=380.12 Aligned_cols=213 Identities=34% Similarity=0.544 Sum_probs=186.8
Q ss_pred EEEEeEEEECCCCCCcccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCccCCCCCHHHHhcceE
Q 001411 835 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRKIG 914 (1082)
Q Consensus 835 I~~~~Vs~~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR~~i~ 914 (1082)
++++||+++|+. ..++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+...++++++
T Consensus 4 l~~~~l~~~~~~--~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 81 (277)
T PRK13652 4 IETRDLCYSYSG--SKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREVRKFVG 81 (277)
T ss_pred EEEEEEEEEeCC--CCceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhheE
Confidence 789999999962 235999999999999999999999999999999999999999999999999998877788899999
Q ss_pred EEcccC--ccccccHHHHhccCCC--CCCH----HHHHHHHHHhcHHHHHhhCcccccccccCCCCCCChhHHHHHHHHH
Q 001411 915 LVQQEP--ALFSTTIYENIKYGNE--DASE----IELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIAR 986 (1082)
Q Consensus 915 ~VpQdp--~Lf~gTIreNl~~~~~--~~~d----~ei~~al~~a~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlaLAR 986 (1082)
||||+| .+|+.|+++|+.++.. ..+. +.+.++++.+++.++..+. ...||||||||++|||
T Consensus 82 ~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LS~Gq~qrl~lar 150 (277)
T PRK13652 82 LVFQNPDDQIFSPTVEQDIAFGPINLGLDEETVAHRVSSALHMLGLEELRDRV-----------PHHLSGGEKKRVAIAG 150 (277)
T ss_pred EEecCcccccccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCC-----------cccCCHHHHHHHHHHH
Confidence 999998 4788899999976421 1222 3356667777766554433 3579999999999999
Q ss_pred HHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHhcC--CceEEEEecCchhhh-ccCEEEEEeCCEEEEecChHHHhh
Q 001411 987 AILKNPSILLLDEATSALDTASENLIQEALDKLME--GRTTIMVAHRLSTIR-NADKIAVLQQGKVAEIGSHEQLLR 1060 (1082)
Q Consensus 987 AlL~~~~ILlLDEaTS~LD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~-~~DrI~Vl~~G~ive~G~~~eLl~ 1060 (1082)
||+.+|++|||||||++||+.+.+.+.+.+++..+ ++|+|++||+++.+. .||||++|++|++++.|+++++++
T Consensus 151 aL~~~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~ 227 (277)
T PRK13652 151 VIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGRIVAYGTVEEIFL 227 (277)
T ss_pred HHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEEECCHHHHhc
Confidence 99999999999999999999999999999998753 789999999999995 599999999999999999999975
|
|
| >PRK14251 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-42 Score=377.06 Aligned_cols=224 Identities=31% Similarity=0.499 Sum_probs=186.9
Q ss_pred cEEEEeEEEECCCCCCcccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccc-----CCccEEEECCccCCC--CCH
Q 001411 834 NIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYD-----PISGTVLIDGYDIRT--LNL 906 (1082)
Q Consensus 834 ~I~~~~Vs~~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~-----p~~G~I~idG~di~~--i~~ 906 (1082)
.|+++||+++|+ +.++|+|+||+|++||++||+|+||||||||+++|.|+++ |++|+|.+||.++.. .+.
T Consensus 4 ~l~~~~l~~~~~---~~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~~ 80 (251)
T PRK14251 4 IISAKDVHLSYG---NYEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDL 80 (251)
T ss_pred eEEEEeeEEEEC---CeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccchH
Confidence 489999999996 3469999999999999999999999999999999999997 479999999999864 345
Q ss_pred HHHhcceEEEcccCccccccHHHHhccCCCC--C-----CHHHHHHHHHHhcHHHHHhhCcccccccccCCCCCCChhHH
Q 001411 907 RSLRRKIGLVQQEPALFSTTIYENIKYGNED--A-----SEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQK 979 (1082)
Q Consensus 907 ~~lR~~i~~VpQdp~Lf~gTIreNl~~~~~~--~-----~d~ei~~al~~a~l~~~i~~lp~gldt~v~e~G~~LSgGQr 979 (1082)
..+|+.++|++|++.+|+.|+++|+.++... . .++++.++++..+++... + ........+||||||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~---~----~~~~~~~~~LS~Gq~ 153 (251)
T PRK14251 81 VELRKEVGMVFQQPTPFPFSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKET---K----DNLDRNAQAFSGGQQ 153 (251)
T ss_pred HHhhccEEEEecCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCcch---H----HHhccChhhCCHHHH
Confidence 6678899999999999999999999864211 1 122344555555553211 1 112345568999999
Q ss_pred HHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhc-cCEEEEEeCCEEEEecChHHH
Q 001411 980 QRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLMEGRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGSHEQL 1058 (1082)
Q Consensus 980 QrlaLARAlL~~~~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~G~~~eL 1058 (1082)
||++||||++++|++|||||||++||+++.+.+.+.|++..+++|+|+|||+++.+.. ||+|++|++|++++.|+++++
T Consensus 154 qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 233 (251)
T PRK14251 154 QRICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELKHQYTFIMVTHNLQQAGRISDQTAFLMNGDLIEAGPTEEM 233 (251)
T ss_pred HHHHHHHHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHHHcCCeEEEEECCHHHHHhhcCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999988777899999999999865 999999999999999999999
Q ss_pred hhhccchHH
Q 001411 1059 LRKENGIYK 1067 (1082)
Q Consensus 1059 l~~~~g~f~ 1067 (1082)
...+...|.
T Consensus 234 ~~~~~~~~~ 242 (251)
T PRK14251 234 FIAPKKQIT 242 (251)
T ss_pred HhCCCCHHH
Confidence 764443343
|
|
| >TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-42 Score=392.43 Aligned_cols=212 Identities=31% Similarity=0.502 Sum_probs=183.2
Q ss_pred cEEEEEEEEECCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHHhCCCCCCcEEEECCeeCCCCCHHHHhhhce
Q 001411 205 QIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMG 284 (1082)
Q Consensus 205 ~i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 284 (1082)
.++++|++++|++ ..+|+|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++.+.++. ++.|+
T Consensus 4 ~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~--~r~ig 79 (353)
T TIGR03265 4 YLSIDNIRKRFGA--FTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQ--KRDYG 79 (353)
T ss_pred EEEEEEEEEEeCC--eEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHH--HCCEE
Confidence 4899999999975 3489999999999999999999999999999999999999999999999999876654 56799
Q ss_pred EEccCCCcChh-cHHHHHhcCCCCC--C----HHHHHHHHHHhchHHHHhcCCCCccccccCCCCCCChHHHHHHHHHHh
Q 001411 285 LVSQEPALFAT-SIANNILLGKEDA--S----MDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARA 357 (1082)
Q Consensus 285 ~v~Q~~~l~~~-ti~~ni~~g~~~~--~----~~~~~~~~~~~~~~~~i~~lp~g~~t~~g~~g~~LSgGqkqri~lARa 357 (1082)
||+|++.+|+. ||+|||.|+.... + .+++.++++.. |++........+|||||||||+||||
T Consensus 80 ~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~l-----------~L~~~~~~~~~~LSgGq~QRvaLARa 148 (353)
T TIGR03265 80 IVFQSYALFPNLTVADNIAYGLKNRGMGRAEVAERVAELLDLV-----------GLPGSERKYPGQLSGGQQQRVALARA 148 (353)
T ss_pred EEeCCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHc-----------CCCchhhCChhhCCHHHHHHHHHHHH
Confidence 99999999975 9999999874321 1 12333444444 44444455667899999999999999
Q ss_pred cccCCCeeEEeCcccCCCHHHHHHHHHHHHHHcC--CCeEEEEccCccccc-cCCEEEEEeCCEEEEecCchhhhhc
Q 001411 358 VLRNPKILLLDEATSALDAESELIVQRALEKIMS--NRTTIVVAHRLSTVR-DVDTIMVLKNGQVVESGTHVDLISK 431 (1082)
Q Consensus 358 l~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~vtH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~~ 431 (1082)
|+.+|+++|||||||+||+.++..+.+.|+++.+ +.|+|+|||+++++. .||+|++|++|++++.|+++++..+
T Consensus 149 L~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~ea~~l~d~i~vl~~G~i~~~g~~~~~~~~ 225 (353)
T TIGR03265 149 LATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQEEALSMADRIVVMNHGVIEQVGTPQEIYRH 225 (353)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 9999999999999999999999999999988754 689999999999875 5999999999999999999999865
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely. |
| >cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-42 Score=362.99 Aligned_cols=200 Identities=36% Similarity=0.583 Sum_probs=181.4
Q ss_pred EEEEeEEEECCCCCC--cccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCccCCCCCHHHHhcc
Q 001411 835 IELRNVSFKYPVRPD--ITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRK 912 (1082)
Q Consensus 835 I~~~~Vs~~Y~~~~~--~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR~~ 912 (1082)
|+++||+++|+...+ .++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+|| +
T Consensus 1 l~~~~l~~~~~~~~~~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g-------------~ 67 (204)
T cd03250 1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPG-------------S 67 (204)
T ss_pred CEEeEEEEecCCCCccccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcC-------------E
Confidence 579999999974211 3699999999999999999999999999999999999999999999999 6
Q ss_pred eEEEcccCccccccHHHHhccCCCCCCHHHHHHHHHHhcHHHHHhhCcccccccccCCCCCCChhHHHHHHHHHHHccCC
Q 001411 913 IGLVQQEPALFSTTIYENIKYGNEDASEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNP 992 (1082)
Q Consensus 913 i~~VpQdp~Lf~gTIreNl~~~~~~~~d~ei~~al~~a~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlaLARAlL~~~ 992 (1082)
|+|+||+|.+|++|+++|+.++. ..++++.+++++.+++.+++..+|.|+++.+.+.+.+||+|||||++||||++++|
T Consensus 68 i~~~~q~~~l~~~t~~enl~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral~~~p 146 (204)
T cd03250 68 IAYVSQEPWIQNGTIRENILFGK-PFDEERYEKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDA 146 (204)
T ss_pred EEEEecCchhccCcHHHHhccCC-CcCHHHHHHHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999853 34556778888899999999999999999999999999999999999999999999
Q ss_pred CEEEeeCCCCCCCHHHHHHHHH-HHHHhc-CCceEEEEecCchhhhccCEEEEEeCCE
Q 001411 993 SILLLDEATSALDTASENLIQE-ALDKLM-EGRTTIMVAHRLSTIRNADKIAVLQQGK 1048 (1082)
Q Consensus 993 ~ILlLDEaTS~LD~~te~~I~~-~l~~~~-~~~TvI~IaHrl~ti~~~DrI~Vl~~G~ 1048 (1082)
+++||||||++||+++.+.+.+ .+++.. +++|||++||+++.+..||+|++|++|+
T Consensus 147 ~llllDEP~~~LD~~~~~~l~~~ll~~~~~~~~tvi~~sh~~~~~~~~d~i~~l~~G~ 204 (204)
T cd03250 147 DIYLLDDPLSAVDAHVGRHIFENCILGLLLNNKTRILVTHQLQLLPHADQIVVLDNGR 204 (204)
T ss_pred CEEEEeCccccCCHHHHHHHHHHHHHHhccCCCEEEEEeCCHHHHhhCCEEEEEeCCC
Confidence 9999999999999999888877 566553 4689999999999998899999999985
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >PRK14248 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-42 Score=378.81 Aligned_cols=219 Identities=30% Similarity=0.507 Sum_probs=185.2
Q ss_pred cEEEEeEEEECCCCCCcccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccc-----CCccEEEECCccCCC--CCH
Q 001411 834 NIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYD-----PISGTVLIDGYDIRT--LNL 906 (1082)
Q Consensus 834 ~I~~~~Vs~~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~-----p~~G~I~idG~di~~--i~~ 906 (1082)
.|+++|++++|+ +.++|+|+||+|++||++||+|+||||||||+++|.|+++ |++|+|.+||.++.. .+.
T Consensus 21 ~l~~~~l~~~~~---~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 97 (268)
T PRK14248 21 ILEVKDLSIYYG---EKRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNINV 97 (268)
T ss_pred eEEEEEEEEEeC---CceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEcccccccH
Confidence 599999999996 3469999999999999999999999999999999999875 689999999999865 344
Q ss_pred HHHhcceEEEcccCccccccHHHHhccCCC---CC----CHHHHHHHHHHhcHHHHHhhCcccccccccCCCCCCChhHH
Q 001411 907 RSLRRKIGLVQQEPALFSTTIYENIKYGNE---DA----SEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQK 979 (1082)
Q Consensus 907 ~~lR~~i~~VpQdp~Lf~gTIreNl~~~~~---~~----~d~ei~~al~~a~l~~~i~~lp~gldt~v~e~G~~LSgGQr 979 (1082)
..+|++++|+||++.+|++|+++|+.++.. .. .++.+.++++..++.+.+. ........+||||||
T Consensus 98 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LSgGq~ 170 (268)
T PRK14248 98 VNLRREIGMVFQKPNPFPKSIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDEVK-------DRLHSSALSLSGGQQ 170 (268)
T ss_pred HHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCcchH-------HHHhcCcccCCHHHH
Confidence 577899999999999999999999986421 10 1233455555555432211 223345678999999
Q ss_pred HHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhc-cCEEEEEeCCEEEEecChHHH
Q 001411 980 QRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLMEGRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGSHEQL 1058 (1082)
Q Consensus 980 QrlaLARAlL~~~~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~G~~~eL 1058 (1082)
||++|||||+++|++|||||||++||+.+.+.+.+.|++..+++|||++||+++.+.. ||+|++|++|++++.|+++++
T Consensus 171 qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 250 (268)
T PRK14248 171 QRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKEEYSIIIVTHNMQQALRVSDRTAFFLNGDLVEYDQTEQI 250 (268)
T ss_pred HHHHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhcCCEEEEEEeCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999988667899999999998865 999999999999999999999
Q ss_pred hhhc
Q 001411 1059 LRKE 1062 (1082)
Q Consensus 1059 l~~~ 1062 (1082)
..++
T Consensus 251 ~~~~ 254 (268)
T PRK14248 251 FTSP 254 (268)
T ss_pred HhCC
Confidence 8643
|
|
| >PRK14268 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-42 Score=377.28 Aligned_cols=223 Identities=30% Similarity=0.505 Sum_probs=187.2
Q ss_pred cEEEEeEEEECCCCCCcccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccC-----CccEEEECCccCCCC--CH
Q 001411 834 NIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDP-----ISGTVLIDGYDIRTL--NL 906 (1082)
Q Consensus 834 ~I~~~~Vs~~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p-----~~G~I~idG~di~~i--~~ 906 (1082)
.|+++|++++|+ +.++|+|+||+|++||++||+|+||||||||+++|.|+++| ++|+|.+||.++... +.
T Consensus 12 ~l~~~~l~~~~~---~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 88 (258)
T PRK14268 12 QIKVENLNLWYG---EKQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVDV 88 (258)
T ss_pred eEEEeeeEEEeC---CeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccchH
Confidence 599999999996 34699999999999999999999999999999999999985 799999999998653 34
Q ss_pred HHHhcceEEEcccCccccccHHHHhccCCC--CCCH----HHHHHHHHHhcHHHHHhhCcccccccccCCCCCCChhHHH
Q 001411 907 RSLRRKIGLVQQEPALFSTTIYENIKYGNE--DASE----IELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQ 980 (1082)
Q Consensus 907 ~~lR~~i~~VpQdp~Lf~gTIreNl~~~~~--~~~d----~ei~~al~~a~l~~~i~~lp~gldt~v~e~G~~LSgGQrQ 980 (1082)
..+|+.++|+||++.+|+.|+++|+.++.. ..+. +++.++++.+++.+.+ +.........|||||||
T Consensus 89 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LSgG~~q 161 (258)
T PRK14268 89 VELRKNVGMVFQKPNPFPMSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWDET-------SDRLKSPALSLSGGQQQ 161 (258)
T ss_pred HHHhhhEEEEecCCccCcccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcch-------hhhhcCChhhCCHHHHH
Confidence 567889999999999999999999986421 1222 2345556665553221 11223445679999999
Q ss_pred HHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhc-cCEEEEEeCCEEEEecChHHHh
Q 001411 981 RVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLMEGRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGSHEQLL 1059 (1082)
Q Consensus 981 rlaLARAlL~~~~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~G~~~eLl 1059 (1082)
|++|||||+++|+||||||||++||+.+.+.+.+.|++..+++|+|+|||+++.+.+ ||+|++|++|++++.|+++++.
T Consensus 162 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 241 (258)
T PRK14268 162 RLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLKKDYTIVIVTHNMQQAARISDYTGFFLMGELIEFGQTRQIF 241 (258)
T ss_pred HHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhhCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 999999999999999999999999999999999999987668999999999999865 9999999999999999999998
Q ss_pred hhccchH
Q 001411 1060 RKENGIY 1066 (1082)
Q Consensus 1060 ~~~~g~f 1066 (1082)
+++...|
T Consensus 242 ~~~~~~~ 248 (258)
T PRK14268 242 HNPREKS 248 (258)
T ss_pred cCCCCHH
Confidence 6544433
|
|
| >TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-42 Score=371.40 Aligned_cols=216 Identities=31% Similarity=0.555 Sum_probs=182.3
Q ss_pred EEEEeEEEECCCCCCcccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCccCCCCCHHHHhcceE
Q 001411 835 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRKIG 914 (1082)
Q Consensus 835 I~~~~Vs~~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR~~i~ 914 (1082)
|+++|++++|+ +.++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++...+... +++++
T Consensus 2 l~~~~l~~~~~---~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~~~~~~~-~~~i~ 77 (236)
T TIGR03864 2 LEVAGLSFAYG---ARRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPRAA-LARLG 77 (236)
T ss_pred EEEEeeEEEEC---CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccCChhh-hhhEE
Confidence 78999999996 346999999999999999999999999999999999999999999999999998776544 46899
Q ss_pred EEcccCcc-ccccHHHHhccCCC--CCCHHHHHHHHHHhcHHHHHhhCcccccccccCCCCCCChhHHHHHHHHHHHccC
Q 001411 915 LVQQEPAL-FSTTIYENIKYGNE--DASEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKN 991 (1082)
Q Consensus 915 ~VpQdp~L-f~gTIreNl~~~~~--~~~d~ei~~al~~a~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlaLARAlL~~ 991 (1082)
|+||++.+ +..|+++|+.++.. ..+.++..+ .+.++++.+ |++........+||||||||++||||++++
T Consensus 78 ~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--gl~~~~~~~~~~LS~G~~qrl~laral~~~ 150 (236)
T TIGR03864 78 VVFQQPTLDLDLSVRQNLRYHAALHGLSRAEARE-----RIAALLARL--GLAERADDKVRELNGGHRRRVEIARALLHR 150 (236)
T ss_pred EeCCCCCCcccCcHHHHHHHHHHhcCCCHHHHHH-----HHHHHHHHc--CChhhhcCChhhCCHHHHHHHHHHHHHhcC
Confidence 99999987 46799999976421 122221111 122333333 444445556678999999999999999999
Q ss_pred CCEEEeeCCCCCCCHHHHHHHHHHHHHhc--CCceEEEEecCchhhhccCEEEEEeCCEEEEecChHHHhhh
Q 001411 992 PSILLLDEATSALDTASENLIQEALDKLM--EGRTTIMVAHRLSTIRNADKIAVLQQGKVAEIGSHEQLLRK 1061 (1082)
Q Consensus 992 ~~ILlLDEaTS~LD~~te~~I~~~l~~~~--~~~TvI~IaHrl~ti~~~DrI~Vl~~G~ive~G~~~eLl~~ 1061 (1082)
|+||||||||++||+.+.+.+.+.|++.. +++|+|++||+++.+..||+|++|++|++++.|+++++.+.
T Consensus 151 p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 222 (236)
T TIGR03864 151 PALLLLDEPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVDEIEADDRLVVLHRGRVLADGAAAELRGA 222 (236)
T ss_pred CCEEEEcCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChhhHhhCCEEEEEeCCeEEEeCCHHHHHHH
Confidence 99999999999999999999999999875 37899999999999988999999999999999999999863
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification. |
| >cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-42 Score=366.92 Aligned_cols=203 Identities=29% Similarity=0.497 Sum_probs=177.1
Q ss_pred EEEEeEEEECCCCCCcccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCccCCCCCHHHHhcceE
Q 001411 835 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRKIG 914 (1082)
Q Consensus 835 I~~~~Vs~~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR~~i~ 914 (1082)
|+++||+++|+ +.++|+|+||+|++| ++||+|+||||||||+++|.|+++|++|+|.++|.++...+ ..+|++++
T Consensus 1 i~~~~~~~~~~---~~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~-~~~~~~i~ 75 (211)
T cd03264 1 LQLENLTKRYG---KKRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQP-QKLRRRIG 75 (211)
T ss_pred CEEEEEEEEEC---CEEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCccccch-HHHHhheE
Confidence 57999999996 346999999999999 99999999999999999999999999999999999998776 77899999
Q ss_pred EEcccCccccc-cHHHHhccCCC--CCC----HHHHHHHHHHhcHHHHHhhCcccccccccCCCCCCChhHHHHHHHHHH
Q 001411 915 LVQQEPALFST-TIYENIKYGNE--DAS----EIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARA 987 (1082)
Q Consensus 915 ~VpQdp~Lf~g-TIreNl~~~~~--~~~----d~ei~~al~~a~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlaLARA 987 (1082)
|+||+|.+|.+ |+++|+.+... ..+ ++++.++++..++.++. ++. ..+||||||||++||||
T Consensus 76 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~----~~~LS~G~~qrv~la~a 144 (211)
T cd03264 76 YLPQEFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNLGDRA-------KKK----IGSLSGGMRRRVGIAQA 144 (211)
T ss_pred EecCCCcccccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCHHHH-------hCc----hhhCCHHHHHHHHHHHH
Confidence 99999999986 99999975311 111 23456667777765543 222 35699999999999999
Q ss_pred HccCCCEEEeeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhc-cCEEEEEeCCEEEEec
Q 001411 988 ILKNPSILLLDEATSALDTASENLIQEALDKLMEGRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIG 1053 (1082)
Q Consensus 988 lL~~~~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~G 1053 (1082)
++++|++|||||||++||+.+.+.+.+.|++..+++|+|+|||+++.+.. |||+++|++|++++.|
T Consensus 145 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~g~i~~~g 211 (211)
T cd03264 145 LVGDPSILIVDEPTAGLDPEERIRFRNLLSELGEDRIVILSTHIVEDVESLCNQVAVLNKGKLVFEG 211 (211)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEecC
Confidence 99999999999999999999999999999988767999999999999965 9999999999999865
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-42 Score=371.48 Aligned_cols=210 Identities=29% Similarity=0.472 Sum_probs=178.0
Q ss_pred cEEEEeEEEECCCCC-CcccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCccCCCCCHHH---H
Q 001411 834 NIELRNVSFKYPVRP-DITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRS---L 909 (1082)
Q Consensus 834 ~I~~~~Vs~~Y~~~~-~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~---l 909 (1082)
.++++||+++|+.+. ..++|+|+||+|++||+++|+|+||||||||+++|.|+++|++|+|.+||.++..++... +
T Consensus 5 ~l~~~~l~~~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~ 84 (233)
T PRK11629 5 LLQCDNLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAEL 84 (233)
T ss_pred eEEEEeEEEEcCCCCcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHHHHHHH
Confidence 389999999997321 147999999999999999999999999999999999999999999999999999887654 3
Q ss_pred h-cceEEEcccCccccc-cHHHHhccCCC--CCC----HHHHHHHHHHhcHHHHHhhCcccccccccCCCCCCChhHHHH
Q 001411 910 R-RKIGLVQQEPALFST-TIYENIKYGNE--DAS----EIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQR 981 (1082)
Q Consensus 910 R-~~i~~VpQdp~Lf~g-TIreNl~~~~~--~~~----d~ei~~al~~a~l~~~i~~lp~gldt~v~e~G~~LSgGQrQr 981 (1082)
| ++++|+||+|.+|+. |+++|+.++.. ..+ ++++.++++..++.+ .......+||||||||
T Consensus 85 ~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-----------~~~~~~~~LSgG~~qr 153 (233)
T PRK11629 85 RNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEINSRALEMLAAVGLEH-----------RANHRPSELSGGERQR 153 (233)
T ss_pred HhccEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCch-----------hhhCChhhCCHHHHHH
Confidence 3 689999999999875 99999976311 112 223445555554433 3334456899999999
Q ss_pred HHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHhc--CCceEEEEecCchhhhccCEEEEEeCCEEEEecC
Q 001411 982 VAIARAILKNPSILLLDEATSALDTASENLIQEALDKLM--EGRTTIMVAHRLSTIRNADKIAVLQQGKVAEIGS 1054 (1082)
Q Consensus 982 laLARAlL~~~~ILlLDEaTS~LD~~te~~I~~~l~~~~--~~~TvI~IaHrl~ti~~~DrI~Vl~~G~ive~G~ 1054 (1082)
++||||++++|+||||||||++||+.+.+.+.+.|++.. +++|+|+|||+++.+..+|++++|++|+|++.|+
T Consensus 154 l~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~~~~~~~~~~~l~~G~i~~~~~ 228 (233)
T PRK11629 154 VAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQLAKRMSRQLEMRDGRLTAELS 228 (233)
T ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhhCEEEEEECCEEEEEec
Confidence 999999999999999999999999999999999999874 4789999999999999899999999999998775
|
|
| >cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-42 Score=368.65 Aligned_cols=209 Identities=28% Similarity=0.486 Sum_probs=180.0
Q ss_pred EEEEeEEEECCCCCCcccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCccCCCCCHHHHhcceE
Q 001411 835 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRKIG 914 (1082)
Q Consensus 835 I~~~~Vs~~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR~~i~ 914 (1082)
|+++|++++|+ +.++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++... ...+|++++
T Consensus 1 i~~~~~~~~~~---~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~-~~~~~~~i~ 76 (220)
T cd03265 1 IEVENLVKKYG---DFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVRE-PREVRRRIG 76 (220)
T ss_pred CEEEEEEEEEC---CEEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCcC-hHHHhhcEE
Confidence 57899999996 34699999999999999999999999999999999999999999999999988753 356788999
Q ss_pred EEcccCccccc-cHHHHhccCCC--CC----CHHHHHHHHHHhcHHHHHhhCcccccccccCCCCCCChhHHHHHHHHHH
Q 001411 915 LVQQEPALFST-TIYENIKYGNE--DA----SEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARA 987 (1082)
Q Consensus 915 ~VpQdp~Lf~g-TIreNl~~~~~--~~----~d~ei~~al~~a~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlaLARA 987 (1082)
|+||++.+|+. |+++|+.++.. .. .++++.++++..++.++..+ . ..+||||||||++||||
T Consensus 77 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~----~~~LS~G~~qr~~la~a 145 (220)
T cd03265 77 IVFQDLSVDDELTGWENLYIHARLYGVPGAERRERIDELLDFVGLLEAADR-------L----VKTYSGGMRRRLEIARS 145 (220)
T ss_pred EecCCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhC-------C----hhhCCHHHHHHHHHHHH
Confidence 99999998875 99999976311 11 12345666777766554333 2 35799999999999999
Q ss_pred HccCCCEEEeeCCCCCCCHHHHHHHHHHHHHhcC--CceEEEEecCchhhhc-cCEEEEEeCCEEEEecChHHH
Q 001411 988 ILKNPSILLLDEATSALDTASENLIQEALDKLME--GRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGSHEQL 1058 (1082)
Q Consensus 988 lL~~~~ILlLDEaTS~LD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~G~~~eL 1058 (1082)
++.+|++|||||||++||+.+.+.+.+.|++..+ ++|+|+|||+++.+.. ||+|++|++|++++.|+++++
T Consensus 146 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 219 (220)
T cd03265 146 LVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYMEEAEQLCDRVAIIDHGRIIAEGTPEEL 219 (220)
T ss_pred HhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEeCChHHc
Confidence 9999999999999999999999999999998753 7899999999999865 999999999999999998875
|
In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14274 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-42 Score=376.09 Aligned_cols=222 Identities=30% Similarity=0.498 Sum_probs=187.0
Q ss_pred cEEEEeEEEECCCCCCcccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccc--C---CccEEEECCccCCC--CCH
Q 001411 834 NIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYD--P---ISGTVLIDGYDIRT--LNL 906 (1082)
Q Consensus 834 ~I~~~~Vs~~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~--p---~~G~I~idG~di~~--i~~ 906 (1082)
.|+++||+++|+ +.++|+|+||+|++||++||+|+||||||||+++|.|+++ | ++|+|.+||.++.. .+.
T Consensus 12 ~l~i~~l~~~~~---~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~~~ 88 (259)
T PRK14274 12 VYQINGMNLWYG---QHHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVDL 88 (259)
T ss_pred eEEEeeEEEEEC---CeeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccccCH
Confidence 499999999996 3469999999999999999999999999999999999997 3 58999999999864 445
Q ss_pred HHHhcceEEEcccCccccccHHHHhccCCCC---CCHH----HHHHHHHHhcHHHHHhhCcccccccccCCCCCCChhHH
Q 001411 907 RSLRRKIGLVQQEPALFSTTIYENIKYGNED---ASEI----ELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQK 979 (1082)
Q Consensus 907 ~~lR~~i~~VpQdp~Lf~gTIreNl~~~~~~---~~d~----ei~~al~~a~l~~~i~~lp~gldt~v~e~G~~LSgGQr 979 (1082)
..+|++++|+||++.+|++|+++|+.++... .+++ ++.++++..++.+++. ......+.+||||||
T Consensus 89 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~l~~~~~~LS~Gq~ 161 (259)
T PRK14274 89 VELRKNIGMVFQKGNPFPQSIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVK-------DRLHTQALSLSGGQQ 161 (259)
T ss_pred HHHhhceEEEecCCcccccCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhh-------hhhhCCcccCCHHHH
Confidence 6788999999999999999999999764211 1222 2344455555543322 223445568999999
Q ss_pred HHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhc-cCEEEEEeCCEEEEecChHHH
Q 001411 980 QRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLMEGRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGSHEQL 1058 (1082)
Q Consensus 980 QrlaLARAlL~~~~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~G~~~eL 1058 (1082)
||++||||++++|+||||||||++||+.+...+.+.|++..+++|+|+|||+++.+.. ||||++|++|++++.|+++++
T Consensus 162 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 241 (259)
T PRK14274 162 QRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKEKYTIVIVTHNMQQAARVSDQTAFFYMGELVECNDTNKM 241 (259)
T ss_pred HHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 9999999999999999999999999999999999999998778899999999999865 999999999999999999999
Q ss_pred hhhccch
Q 001411 1059 LRKENGI 1065 (1082)
Q Consensus 1059 l~~~~g~ 1065 (1082)
.+++...
T Consensus 242 ~~~~~~~ 248 (259)
T PRK14274 242 FSNPDDQ 248 (259)
T ss_pred hhCCCCH
Confidence 8654443
|
|
| >PRK14236 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-42 Score=378.15 Aligned_cols=221 Identities=33% Similarity=0.552 Sum_probs=189.7
Q ss_pred cccEEEEeEEEECCCCCCcccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccC-----CccEEEECCccCCC--C
Q 001411 832 KGNIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDP-----ISGTVLIDGYDIRT--L 904 (1082)
Q Consensus 832 ~g~I~~~~Vs~~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p-----~~G~I~idG~di~~--i 904 (1082)
.+.|+++||+++|+ +.++|+|+||+|++||.+||+|+||||||||+++|.|+++| ++|+|.+||.++.. .
T Consensus 23 ~~~l~~~nl~~~~~---~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~~ 99 (272)
T PRK14236 23 QTALEVRNLNLFYG---DKQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKV 99 (272)
T ss_pred CcEEEEEEEEEEEC---CeeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECccccc
Confidence 45699999999996 34699999999999999999999999999999999999984 89999999999875 3
Q ss_pred CHHHHhcceEEEcccCccccccHHHHhccCCC--CC-C----HHHHHHHHHHhcHHHHHhhCcccccccccCCCCCCChh
Q 001411 905 NLRSLRRKIGLVQQEPALFSTTIYENIKYGNE--DA-S----EIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGG 977 (1082)
Q Consensus 905 ~~~~lR~~i~~VpQdp~Lf~gTIreNl~~~~~--~~-~----d~ei~~al~~a~l~~~i~~lp~gldt~v~e~G~~LSgG 977 (1082)
+...+|++++|+||++.+|++|+++|+.++.. .. . ++.+.++++.+++.+.+. +..+..+.+||||
T Consensus 100 ~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~G 172 (272)
T PRK14236 100 DVAELRRRVGMVFQRPNPFPKSIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEVK-------DRLHENAFGLSGG 172 (272)
T ss_pred CHHHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCChhHH-------HHhhCCcccCCHH
Confidence 45678999999999999999999999986421 11 1 233566666666654332 2344556789999
Q ss_pred HHHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhc-cCEEEEEeCCEEEEecChH
Q 001411 978 QKQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLMEGRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGSHE 1056 (1082)
Q Consensus 978 QrQrlaLARAlL~~~~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~G~~~ 1056 (1082)
||||++||||++++|+||||||||++||+.+.+.+.+.|++..+++|+|++||+++.+.. ||+|++|++|++++.|+++
T Consensus 173 q~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~ 252 (272)
T PRK14236 173 QQQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKSKYTIVIVTHNMQQAARVSDYTAFMYMGKLVEYGDTD 252 (272)
T ss_pred HHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEeCCHHHHHhhCCEEEEEECCEEEecCCHH
Confidence 999999999999999999999999999999999999999998778899999999999865 9999999999999999999
Q ss_pred HHhhhc
Q 001411 1057 QLLRKE 1062 (1082)
Q Consensus 1057 eLl~~~ 1062 (1082)
++.+++
T Consensus 253 ~~~~~~ 258 (272)
T PRK14236 253 TLFTSP 258 (272)
T ss_pred HHhcCC
Confidence 998643
|
|
| >PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-42 Score=378.44 Aligned_cols=215 Identities=33% Similarity=0.584 Sum_probs=186.2
Q ss_pred cEEEEeEEEECCCCCCcccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCccCCCCCHHHHhcce
Q 001411 834 NIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRKI 913 (1082)
Q Consensus 834 ~I~~~~Vs~~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR~~i 913 (1082)
.|+++|++++|+. .+.++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++...+...+|+++
T Consensus 7 ~l~~~nl~~~~~~-~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i 85 (271)
T PRK13632 7 MIKVENVSFSYPN-SENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEIRKKI 85 (271)
T ss_pred EEEEEeEEEEcCC-CCccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcCCHHHHhcce
Confidence 4899999999962 235799999999999999999999999999999999999999999999999999888888899999
Q ss_pred EEEcccC--ccccccHHHHhccCCC--CCCHHH----HHHHHHHhcHHHHHhhCcccccccccCCCCCCChhHHHHHHHH
Q 001411 914 GLVQQEP--ALFSTTIYENIKYGNE--DASEIE----LMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIA 985 (1082)
Q Consensus 914 ~~VpQdp--~Lf~gTIreNl~~~~~--~~~d~e----i~~al~~a~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlaLA 985 (1082)
+|+||+| .++..|+++|+.++.. ..+.++ +.++++..++.++.. ....+||||||||++||
T Consensus 86 ~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrl~la 154 (271)
T PRK13632 86 GIIFQNPDNQFIGATVEDDIAFGLENKKVPPKKMKDIIDDLAKKVGMEDYLD-----------KEPQNLSGGQKQRVAIA 154 (271)
T ss_pred EEEEeCHHHhcCcccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCHHHhh-----------CCcccCCHHHHHHHHHH
Confidence 9999998 4567899999986421 123332 344555555554433 33468999999999999
Q ss_pred HHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHhcC--CceEEEEecCchhhhccCEEEEEeCCEEEEecChHHHhh
Q 001411 986 RAILKNPSILLLDEATSALDTASENLIQEALDKLME--GRTTIMVAHRLSTIRNADKIAVLQQGKVAEIGSHEQLLR 1060 (1082)
Q Consensus 986 RAlL~~~~ILlLDEaTS~LD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~~~DrI~Vl~~G~ive~G~~~eLl~ 1060 (1082)
|||+++|++|||||||++||+.+.+.+.+.|++..+ ++|+|++||+++.+..||+|++|++|++++.|+++++.+
T Consensus 155 ral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 231 (271)
T PRK13632 155 SVLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDEAILADKVIVFSEGKLIAQGKPKEILN 231 (271)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechhHHhhCCEEEEEECCEEEEecCHHHHhc
Confidence 999999999999999999999999999999998753 489999999999988899999999999999999999876
|
|
| >PRK13633 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-42 Score=379.96 Aligned_cols=217 Identities=31% Similarity=0.528 Sum_probs=188.5
Q ss_pred cEEEEeEEEECCCCC---CcccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCccCCCCC-HHHH
Q 001411 834 NIELRNVSFKYPVRP---DITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLN-LRSL 909 (1082)
Q Consensus 834 ~I~~~~Vs~~Y~~~~---~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~-~~~l 909 (1082)
.|+++|++++|+... +.++|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.++.+.+ ...+
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~ 83 (280)
T PRK13633 4 MIKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENLWDI 83 (280)
T ss_pred eEEEeeeEEEcCCCCCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeccccccHHHH
Confidence 489999999997321 246999999999999999999999999999999999999999999999999987654 4567
Q ss_pred hcceEEEcccCc--cccccHHHHhccCCC--CCC----HHHHHHHHHHhcHHHHHhhCcccccccccCCCCCCChhHHHH
Q 001411 910 RRKIGLVQQEPA--LFSTTIYENIKYGNE--DAS----EIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQR 981 (1082)
Q Consensus 910 R~~i~~VpQdp~--Lf~gTIreNl~~~~~--~~~----d~ei~~al~~a~l~~~i~~lp~gldt~v~e~G~~LSgGQrQr 981 (1082)
|++++|+||+|. +|..|+.+|+.++.. ..+ ++++.++++.+++.++..+.| .+||||||||
T Consensus 84 ~~~i~~v~q~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----------~~LS~G~~qr 152 (280)
T PRK13633 84 RNKAGMVFQNPDNQIVATIVEEDVAFGPENLGIPPEEIRERVDESLKKVGMYEYRRHAP-----------HLLSGGQKQR 152 (280)
T ss_pred hhheEEEecChhhhhccccHHHHHHhhHhhcCCCHHHHHHHHHHHHHHCCCHhHhhCCc-----------ccCCHHHHHH
Confidence 899999999984 677799999987521 112 345667777777776655433 5799999999
Q ss_pred HHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHhc--CCceEEEEecCchhhhccCEEEEEeCCEEEEecChHHHh
Q 001411 982 VAIARAILKNPSILLLDEATSALDTASENLIQEALDKLM--EGRTTIMVAHRLSTIRNADKIAVLQQGKVAEIGSHEQLL 1059 (1082)
Q Consensus 982 laLARAlL~~~~ILlLDEaTS~LD~~te~~I~~~l~~~~--~~~TvI~IaHrl~ti~~~DrI~Vl~~G~ive~G~~~eLl 1059 (1082)
++|||||+++|++|||||||++||+.+...+.+.|++.. .++|+|+|||+++.+..||++++|++|++++.|+++++.
T Consensus 153 v~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 232 (280)
T PRK13633 153 VAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYMEEAVEADRIIVMDSGKVVMEGTPKEIF 232 (280)
T ss_pred HHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChHHHhcCCEEEEEECCEEEEecCHHHHh
Confidence 999999999999999999999999999999999999874 378999999999999889999999999999999999987
Q ss_pred hh
Q 001411 1060 RK 1061 (1082)
Q Consensus 1060 ~~ 1061 (1082)
..
T Consensus 233 ~~ 234 (280)
T PRK13633 233 KE 234 (280)
T ss_pred cC
Confidence 63
|
|
| >PRK14245 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-42 Score=375.85 Aligned_cols=221 Identities=30% Similarity=0.536 Sum_probs=186.9
Q ss_pred cEEEEeEEEECCCCCCcccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHhcc---ccC--CccEEEECCccCCCC--CH
Q 001411 834 NIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRF---YDP--ISGTVLIDGYDIRTL--NL 906 (1082)
Q Consensus 834 ~I~~~~Vs~~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl---~~p--~~G~I~idG~di~~i--~~ 906 (1082)
.|+++|++++|+ +.++|+|+||+|++||.+||+|+||||||||+++|.|+ ++| ++|+|.+||.++... +.
T Consensus 3 ~l~~~~~~~~~~---~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 79 (250)
T PRK14245 3 KIDARDVNFWYG---DFHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQV 79 (250)
T ss_pred EEEEEEEEEEEC---CEeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecccccccH
Confidence 489999999996 34699999999999999999999999999999999997 444 589999999998764 34
Q ss_pred HHHhcceEEEcccCccccccHHHHhccCCC--CC-----CHHHHHHHHHHhcHHHHHhhCcccccccccCCCCCCChhHH
Q 001411 907 RSLRRKIGLVQQEPALFSTTIYENIKYGNE--DA-----SEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQK 979 (1082)
Q Consensus 907 ~~lR~~i~~VpQdp~Lf~gTIreNl~~~~~--~~-----~d~ei~~al~~a~l~~~i~~lp~gldt~v~e~G~~LSgGQr 979 (1082)
..+|++++|+||+|.+|+.|+++|+.++.. .. .+++++++++..++.+++. +.....+.+||||||
T Consensus 80 ~~~~~~i~~v~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~G~~ 152 (250)
T PRK14245 80 DELRKNVGMVFQRPNPFPKSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVK-------DKLKESAFALSGGQQ 152 (250)
T ss_pred HHHhhheEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcchh-------hhhhCCcccCCHHHH
Confidence 678899999999999999999999976421 11 1234555666665543332 233455678999999
Q ss_pred HHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhc-cCEEEEEeCCEEEEecChHHH
Q 001411 980 QRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLMEGRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGSHEQL 1058 (1082)
Q Consensus 980 QrlaLARAlL~~~~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~G~~~eL 1058 (1082)
||++|||||+++|+||||||||++||+.+.+.+.+.|++..+++|+|+|||+++.+.. ||||++|++|++++.|+++++
T Consensus 153 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~v~~l~~G~~~~~~~~~~~ 232 (250)
T PRK14245 153 QRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHELKKDYTIVIVTHNMQQAARVSDKTAFFYMGEMVEYDDTKKI 232 (250)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECCEEEEECCHHHH
Confidence 9999999999999999999999999999999999999998778999999999999855 999999999999999999999
Q ss_pred hhhccc
Q 001411 1059 LRKENG 1064 (1082)
Q Consensus 1059 l~~~~g 1064 (1082)
.+++..
T Consensus 233 ~~~~~~ 238 (250)
T PRK14245 233 FTNPEK 238 (250)
T ss_pred hcCCCC
Confidence 865433
|
|
| >PRK14240 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-42 Score=374.75 Aligned_cols=224 Identities=33% Similarity=0.572 Sum_probs=188.5
Q ss_pred ccEEEEeEEEECCCCCCcccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccC-----CccEEEECCccCCC--CC
Q 001411 833 GNIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDP-----ISGTVLIDGYDIRT--LN 905 (1082)
Q Consensus 833 g~I~~~~Vs~~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p-----~~G~I~idG~di~~--i~ 905 (1082)
|.|+++||+++|+ +.++|+|+||+|++||++||+|+||||||||+++|.|+++| ++|+|.+||.++.. .+
T Consensus 2 ~~l~~~~l~~~~~---~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~ 78 (250)
T PRK14240 2 GKISVKDLDLFYG---DFQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDID 78 (250)
T ss_pred CeEEEEEEEEEEC---CceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccc
Confidence 4699999999996 34699999999999999999999999999999999999863 68999999999875 45
Q ss_pred HHHHhcceEEEcccCccccccHHHHhccCCC--CC-----CHHHHHHHHHHhcHHHHHhhCcccccccccCCCCCCChhH
Q 001411 906 LRSLRRKIGLVQQEPALFSTTIYENIKYGNE--DA-----SEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQ 978 (1082)
Q Consensus 906 ~~~lR~~i~~VpQdp~Lf~gTIreNl~~~~~--~~-----~d~ei~~al~~a~l~~~i~~lp~gldt~v~e~G~~LSgGQ 978 (1082)
...+|++++|+||+|.+|+.|+++|+.++.. .. .++++.++++.+++.+.+. ........+|||||
T Consensus 79 ~~~~~~~i~~~~q~~~~~~~t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~~~~~LS~G~ 151 (250)
T PRK14240 79 VNQLRKRVGMVFQQPNPFPMSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEVK-------DRLKKSALGLSGGQ 151 (250)
T ss_pred hHHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhH-------HHHhcCCCCCCHHH
Confidence 5678999999999999999999999986421 11 1234455555655543322 22344556899999
Q ss_pred HHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhc-cCEEEEEeCCEEEEecChHH
Q 001411 979 KQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLMEGRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGSHEQ 1057 (1082)
Q Consensus 979 rQrlaLARAlL~~~~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~G~~~e 1057 (1082)
|||++|||||+.+|++|||||||++||+.+.+.+.+.|++..+++|+|+|||+++.+.. ||+|++|++|++++.|++++
T Consensus 152 ~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~ 231 (250)
T PRK14240 152 QQRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELKKDYTIVIVTHNMQQASRISDKTAFFLNGEIVEFGDTVD 231 (250)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEEeCHHHHHhhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999999988668899999999998865 99999999999999999999
Q ss_pred HhhhccchH
Q 001411 1058 LLRKENGIY 1066 (1082)
Q Consensus 1058 Ll~~~~g~f 1066 (1082)
+...+...+
T Consensus 232 ~~~~~~~~~ 240 (250)
T PRK14240 232 LFTNPKDKR 240 (250)
T ss_pred HHhCCCChH
Confidence 976444333
|
|
| >PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-42 Score=377.99 Aligned_cols=221 Identities=30% Similarity=0.462 Sum_probs=190.7
Q ss_pred cEEEEeEEEECCCCCCcccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCccCCCCCHHHHhcce
Q 001411 834 NIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRKI 913 (1082)
Q Consensus 834 ~I~~~~Vs~~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR~~i 913 (1082)
.|+++||+++|+ +.++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.+.+...+|+.+
T Consensus 11 ~l~i~~l~~~~~---~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i 87 (265)
T PRK10575 11 TFALRNVSFRVP---GRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFARKV 87 (265)
T ss_pred eEEEeeEEEEEC---CEEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEehhhCCHHHHhhhe
Confidence 599999999996 34699999999999999999999999999999999999999999999999999888888899999
Q ss_pred EEEcccCccccc-cHHHHhccCCC----------CCCHHHHHHHHHHhcHHHHHhhCcccccccccCCCCCCChhHHHHH
Q 001411 914 GLVQQEPALFST-TIYENIKYGNE----------DASEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRV 982 (1082)
Q Consensus 914 ~~VpQdp~Lf~g-TIreNl~~~~~----------~~~d~ei~~al~~a~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrl 982 (1082)
+|+||++.++.+ |+++|+.++.. ...++++.++++.+++.++..+. ..+||||||||+
T Consensus 88 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LSgG~~qrv 156 (265)
T PRK10575 88 AYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRL-----------VDSLSGGERQRA 156 (265)
T ss_pred EEeccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCC-----------cccCCHHHHHHH
Confidence 999999877654 99999986421 11234566777777776554432 247999999999
Q ss_pred HHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHhc-C-CceEEEEecCchhhhc-cCEEEEEeCCEEEEecChHHHh
Q 001411 983 AIARAILKNPSILLLDEATSALDTASENLIQEALDKLM-E-GRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGSHEQLL 1059 (1082)
Q Consensus 983 aLARAlL~~~~ILlLDEaTS~LD~~te~~I~~~l~~~~-~-~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~G~~~eLl 1059 (1082)
+|||||+.+|+||||||||++||+.+.+.+.+.|++.. + ++|+|+|||+++.+.. ||+|++|++|++++.|+++++.
T Consensus 157 ~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~~i~~~~d~i~~l~~G~i~~~~~~~~~~ 236 (265)
T PRK10575 157 WIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGEMIAQGTPAELM 236 (265)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHHhc
Confidence 99999999999999999999999999999999999874 2 7899999999999965 9999999999999999999987
Q ss_pred hhccchHHHHH
Q 001411 1060 RKENGIYKQLI 1070 (1082)
Q Consensus 1060 ~~~~g~f~~l~ 1070 (1082)
.. .....++
T Consensus 237 ~~--~~~~~~~ 245 (265)
T PRK10575 237 RG--ETLEQIY 245 (265)
T ss_pred CH--HHHHHHh
Confidence 52 3344444
|
|
| >cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-42 Score=371.50 Aligned_cols=216 Identities=29% Similarity=0.463 Sum_probs=182.3
Q ss_pred EEEEeEEEECCCCCCcccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCccCCCCCHHH-Hhcce
Q 001411 835 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRS-LRRKI 913 (1082)
Q Consensus 835 I~~~~Vs~~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~-lR~~i 913 (1082)
|+++||+++|+ +.++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+... .|+++
T Consensus 1 l~~~~l~~~~~---~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i 77 (232)
T cd03218 1 LRAENLSKRYG---KRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARLGI 77 (232)
T ss_pred CeEEEEEEEeC---CEEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccCCHhHHHhccE
Confidence 47899999996 346999999999999999999999999999999999999999999999999998877655 45789
Q ss_pred EEEcccCccccc-cHHHHhccCCCC--CCHHHHHHHHHHhcHHHHHhhCcccccccccCCCCCCChhHHHHHHHHHHHcc
Q 001411 914 GLVQQEPALFST-TIYENIKYGNED--ASEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILK 990 (1082)
Q Consensus 914 ~~VpQdp~Lf~g-TIreNl~~~~~~--~~d~ei~~al~~a~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlaLARAlL~ 990 (1082)
+|+||++.+|++ |+++|+.++.+. ...++.. ..+.+.++.+ |++........+||||||||++||||++.
T Consensus 78 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrl~la~al~~ 150 (232)
T cd03218 78 GYLPQEASIFRKLTVEENILAVLEIRGLSKKERE-----EKLEELLEEF--HITHLRKSKASSLSGGERRRVEIARALAT 150 (232)
T ss_pred EEecCCccccccCcHHHHHHHHHHhcCCCHHHHH-----HHHHHHHHHc--CChhhhhCChhhCCHHHHHHHHHHHHHhc
Confidence 999999999986 999999864321 1221111 1122333333 44444455567899999999999999999
Q ss_pred CCCEEEeeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEecCchhhhc-cCEEEEEeCCEEEEecChHHHhh
Q 001411 991 NPSILLLDEATSALDTASENLIQEALDKLM-EGRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGSHEQLLR 1060 (1082)
Q Consensus 991 ~~~ILlLDEaTS~LD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~G~~~eLl~ 1060 (1082)
+|++|||||||++||+++.+.+.+.|++.. +++|+|++||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 151 ~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 222 (232)
T cd03218 151 NPKFLLLDEPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNVRETLSITDRAYIIYEGKVLAEGTPEEIAA 222 (232)
T ss_pred CCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEEeCHHHhhc
Confidence 999999999999999999999999999875 47899999999988765 99999999999999999999865
|
The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. |
| >PRK14239 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-42 Score=375.46 Aligned_cols=220 Identities=32% Similarity=0.523 Sum_probs=185.8
Q ss_pred cEEEEeEEEECCCCCCcccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccc--C---CccEEEECCccCCCC--CH
Q 001411 834 NIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYD--P---ISGTVLIDGYDIRTL--NL 906 (1082)
Q Consensus 834 ~I~~~~Vs~~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~--p---~~G~I~idG~di~~i--~~ 906 (1082)
.|+++||+++|+ +.++|+|+||+|++||++||+|+||||||||+++|.|+++ | ++|+|.+||.++... +.
T Consensus 5 ~l~~~~l~~~~~---~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~~ 81 (252)
T PRK14239 5 ILQVSDLSVYYN---KKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDT 81 (252)
T ss_pred eEEEEeeEEEEC---CeeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcccch
Confidence 489999999996 3469999999999999999999999999999999999954 6 489999999998653 34
Q ss_pred HHHhcceEEEcccCccccccHHHHhccCC---CCCC----HHHHHHHHHHhcHHHHHhhCcccccccccCCCCCCChhHH
Q 001411 907 RSLRRKIGLVQQEPALFSTTIYENIKYGN---EDAS----EIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQK 979 (1082)
Q Consensus 907 ~~lR~~i~~VpQdp~Lf~gTIreNl~~~~---~~~~----d~ei~~al~~a~l~~~i~~lp~gldt~v~e~G~~LSgGQr 979 (1082)
..+|+.++||||+|.+|+.|+++|+.++. +... ++++.++++.+++.+.+. +.......+||||||
T Consensus 82 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~G~~ 154 (252)
T PRK14239 82 VDLRKEIGMVFQQPNPFPMSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEVK-------DRLHDSALGLSGGQQ 154 (252)
T ss_pred HhhhhcEEEEecCCccCcCcHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCchhHH-------HHHhcCcccCCHHHH
Confidence 56788999999999999999999998642 1111 233445566666543322 223445678999999
Q ss_pred HHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhc-cCEEEEEeCCEEEEecChHHH
Q 001411 980 QRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLMEGRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGSHEQL 1058 (1082)
Q Consensus 980 QrlaLARAlL~~~~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~G~~~eL 1058 (1082)
||++||||++++|++|||||||++||+.+.+.+.+.|++..+++|+|+|||+++.+.. ||||++|++|++++.|+++++
T Consensus 155 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 234 (252)
T PRK14239 155 QRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKDDYTMLLVTRSMQQASRISDRTGFFLDGDLIEYNDTKQM 234 (252)
T ss_pred HHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHhhCCeEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999988667999999999999865 999999999999999999999
Q ss_pred hhhcc
Q 001411 1059 LRKEN 1063 (1082)
Q Consensus 1059 l~~~~ 1063 (1082)
.+.+.
T Consensus 235 ~~~~~ 239 (252)
T PRK14239 235 FMNPK 239 (252)
T ss_pred HhCCC
Confidence 86443
|
|
| >PRK11607 potG putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-42 Score=390.10 Aligned_cols=219 Identities=31% Similarity=0.538 Sum_probs=188.2
Q ss_pred ccEEEEeEEEECCCCCCcccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCccCCCCCHHHHhcc
Q 001411 833 GNIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRK 912 (1082)
Q Consensus 833 g~I~~~~Vs~~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR~~ 912 (1082)
..|+++||+++|+ +.++|+|+||+|++||.++|+||||||||||+++|.|+.+|++|+|.+||.++..++. .|++
T Consensus 18 ~~l~l~~v~~~~~---~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~--~~r~ 92 (377)
T PRK11607 18 PLLEIRNLTKSFD---GQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPP--YQRP 92 (377)
T ss_pred ceEEEEeEEEEEC---CEEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCH--HHCC
Confidence 3599999999996 3469999999999999999999999999999999999999999999999999987764 4789
Q ss_pred eEEEcccCccccc-cHHHHhccCCC--CCCH----HHHHHHHHHhcHHHHHhhCcccccccccCCCCCCChhHHHHHHHH
Q 001411 913 IGLVQQEPALFST-TIYENIKYGNE--DASE----IELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIA 985 (1082)
Q Consensus 913 i~~VpQdp~Lf~g-TIreNl~~~~~--~~~d----~ei~~al~~a~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlaLA 985 (1082)
++||+|++.+|+. |++||+.++.. ..+. +++.++++..++.++.++ ...+||||||||++||
T Consensus 93 ig~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~v~~~l~~l~L~~~~~~-----------~~~~LSgGq~QRVaLA 161 (377)
T PRK11607 93 INMMFQSYALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFAKR-----------KPHQLSGGQRQRVALA 161 (377)
T ss_pred EEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcC-----------ChhhCCHHHHHHHHHH
Confidence 9999999999975 99999997632 1222 234455566665544333 3357999999999999
Q ss_pred HHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHhc--CCceEEEEecCchhhhc-cCEEEEEeCCEEEEecChHHHhhhc
Q 001411 986 RAILKNPSILLLDEATSALDTASENLIQEALDKLM--EGRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGSHEQLLRKE 1062 (1082)
Q Consensus 986 RAlL~~~~ILlLDEaTS~LD~~te~~I~~~l~~~~--~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~G~~~eLl~~~ 1062 (1082)
|||+++|++||||||||+||..+.+.+.+.|++.. .+.|+|+|||+++.+.. ||||+||++|++++.|+|+++..++
T Consensus 162 RAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~~~~~p 241 (377)
T PRK11607 162 RSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQEEAMTMAGRIAIMNRGKFVQIGEPEEIYEHP 241 (377)
T ss_pred HHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEeCCEEEEEcCHHHHHhCC
Confidence 99999999999999999999999999998888764 37899999999999755 9999999999999999999999866
Q ss_pred cchHH
Q 001411 1063 NGIYK 1067 (1082)
Q Consensus 1063 ~g~f~ 1067 (1082)
...|.
T Consensus 242 ~~~~~ 246 (377)
T PRK11607 242 TTRYS 246 (377)
T ss_pred ccHHH
Confidence 65543
|
|
| >cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-42 Score=366.00 Aligned_cols=199 Identities=30% Similarity=0.561 Sum_probs=173.0
Q ss_pred EEEeEEEECCCCCCcccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCccCCCCCHHHHhcceEE
Q 001411 836 ELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRKIGL 915 (1082)
Q Consensus 836 ~~~~Vs~~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR~~i~~ 915 (1082)
+++||+++|+. ..++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++.. ...|++++|
T Consensus 1 ~~~~l~~~~~~--~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~---~~~~~~i~~ 75 (205)
T cd03226 1 RIENISFSYKK--GTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKA---KERRKSIGY 75 (205)
T ss_pred CcccEEEEeCC--cCceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhh---HHhhcceEE
Confidence 36899999963 1469999999999999999999999999999999999999999999999998864 457789999
Q ss_pred EcccC--ccccccHHHHhccCCCCC--CHHHHHHHHHHhcHHHHHhhCcccccccccCCCCCCChhHHHHHHHHHHHccC
Q 001411 916 VQQEP--ALFSTTIYENIKYGNEDA--SEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKN 991 (1082)
Q Consensus 916 VpQdp--~Lf~gTIreNl~~~~~~~--~d~ei~~al~~a~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlaLARAlL~~ 991 (1082)
+||+| .+|+.|++||+.++.... .++++.++++..++.++..+.| ..||||||||++|||||+++
T Consensus 76 ~~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrv~laral~~~ 144 (205)
T cd03226 76 VMQDVDYQLFTDSVREELLLGLKELDAGNEQAETVLKDLDLYALKERHP-----------LSLSGGQKQRLAIAAALLSG 144 (205)
T ss_pred EecChhhhhhhccHHHHHhhhhhhcCccHHHHHHHHHHcCCchhcCCCc-----------hhCCHHHHHHHHHHHHHHhC
Confidence 99998 467899999998754322 2346777788877766544333 47999999999999999999
Q ss_pred CCEEEeeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEecCchhhhc-cCEEEEEeCCEEE
Q 001411 992 PSILLLDEATSALDTASENLIQEALDKLM-EGRTTIMVAHRLSTIRN-ADKIAVLQQGKVA 1050 (1082)
Q Consensus 992 ~~ILlLDEaTS~LD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~iv 1050 (1082)
|++|||||||++||+++.+.+.+.|++.. +++|+|++||+++.+.. ||+|++|++|+++
T Consensus 145 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~iv 205 (205)
T cd03226 145 KDLLIFDEPTSGLDYKNMERVGELIRELAAQGKAVIVITHDYEFLAKVCDRVLLLANGAIV 205 (205)
T ss_pred CCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEC
Confidence 99999999999999999999999999874 57899999999999975 9999999999985
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-42 Score=373.13 Aligned_cols=221 Identities=27% Similarity=0.458 Sum_probs=183.1
Q ss_pred EEEEeEEEECCCCCCcccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCccCCCCCHHHH-hcce
Q 001411 835 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSL-RRKI 913 (1082)
Q Consensus 835 I~~~~Vs~~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~l-R~~i 913 (1082)
|+++|++++|+ +.++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+.... |+.+
T Consensus 3 i~~~~l~~~~~---~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i 79 (242)
T TIGR03411 3 LYLEGLSVSFD---GFKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIARAGI 79 (242)
T ss_pred EEEEeeEEEcC---CeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCeecCCCCHHHHHhcCe
Confidence 78999999996 3469999999999999999999999999999999999999999999999999988776654 5679
Q ss_pred EEEcccCccccc-cHHHHhccCCCCCCH--HH---HHHHHHHhcHHHHHhhCcccccccccCCCCCCChhHHHHHHHHHH
Q 001411 914 GLVQQEPALFST-TIYENIKYGNEDASE--IE---LMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARA 987 (1082)
Q Consensus 914 ~~VpQdp~Lf~g-TIreNl~~~~~~~~d--~e---i~~al~~a~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlaLARA 987 (1082)
+|+||++.+|++ |+++|+.++...... .. .........+.++++.+ |++.........||||||||++||||
T Consensus 80 ~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~LS~Ge~qrv~lara 157 (242)
T TIGR03411 80 GRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETI--GLADEADRLAGLLSHGQKQWLEIGML 157 (242)
T ss_pred eEeccccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHc--CCchhhcCChhhCCHHHHHHHHHHHH
Confidence 999999999986 999999874321000 00 00000111122333332 34444445567899999999999999
Q ss_pred HccCCCEEEeeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhc-cCEEEEEeCCEEEEecChHHHhh
Q 001411 988 ILKNPSILLLDEATSALDTASENLIQEALDKLMEGRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGSHEQLLR 1060 (1082)
Q Consensus 988 lL~~~~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~G~~~eLl~ 1060 (1082)
++++|++|||||||++||+++.+.+.+.|++..+++|+|++||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 158 l~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~~~~~~~~~~~~~ 231 (242)
T TIGR03411 158 LMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAGKHSVVVVEHDMEFVRSIADKVTVLHQGSVLAEGSLDQVQA 231 (242)
T ss_pred HhcCCCEEEecCCccCCCHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCeEEeeCCHHHHhc
Confidence 99999999999999999999999999999998777899999999999975 99999999999999999999875
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-42 Score=367.63 Aligned_cols=207 Identities=25% Similarity=0.488 Sum_probs=176.6
Q ss_pred EEEEeEEEECCCCCC-cccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCccCCCCCHHHHhcce
Q 001411 835 IELRNVSFKYPVRPD-ITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRKI 913 (1082)
Q Consensus 835 I~~~~Vs~~Y~~~~~-~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR~~i 913 (1082)
|+++||+++|+.+.. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.. ....+|+++
T Consensus 2 l~~~~v~~~~~~~~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~-~~~~~~~~i 80 (218)
T cd03266 2 ITADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVK-EPAEARRRL 80 (218)
T ss_pred eEEEEEEEecCCCCccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEccc-CHHHHHhhE
Confidence 789999999973211 269999999999999999999999999999999999999999999999999875 456778999
Q ss_pred EEEcccCccccc-cHHHHhccCCC--CCC----HHHHHHHHHHhcHHHHHhhCcccccccccCCCCCCChhHHHHHHHHH
Q 001411 914 GLVQQEPALFST-TIYENIKYGNE--DAS----EIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIAR 986 (1082)
Q Consensus 914 ~~VpQdp~Lf~g-TIreNl~~~~~--~~~----d~ei~~al~~a~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlaLAR 986 (1082)
+|+||+|.+|++ |+++|+.+... ..+ ++++.++++..++.+.. .....+||||||||++|||
T Consensus 81 ~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~qrv~lar 149 (218)
T cd03266 81 GFVSDSTGLYDRLTARENLEYFAGLYGLKGDELTARLEELADRLGMEELL-----------DRRVGGFSTGMRQKVAIAR 149 (218)
T ss_pred EEecCCcccCcCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHH-----------hhhhhhcCHHHHHHHHHHH
Confidence 999999999985 99999975321 111 23445556666554443 3345679999999999999
Q ss_pred HHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEecCchhhhc-cCEEEEEeCCEEEEec
Q 001411 987 AILKNPSILLLDEATSALDTASENLIQEALDKLM-EGRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIG 1053 (1082)
Q Consensus 987 AlL~~~~ILlLDEaTS~LD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~G 1053 (1082)
|++++|++|||||||++||+.+.+.+.+.|++.. +++|+|+|||+++.+.. ||+|++|++|++++.|
T Consensus 150 al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~i~~~~ 218 (218)
T cd03266 150 ALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHIMQEVERLCDRVVVLHRGRVVYEG 218 (218)
T ss_pred HHhcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhcCEEEEEECCEEeecC
Confidence 9999999999999999999999999999999875 47899999999999865 9999999999998865
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein. |
| >TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-42 Score=369.23 Aligned_cols=203 Identities=33% Similarity=0.542 Sum_probs=171.5
Q ss_pred EEEEEEEEECCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHHhCCCCCCcEEEECCeeCCCCCHH---HHhhh
Q 001411 206 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLK---WLREQ 282 (1082)
Q Consensus 206 i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~---~~~~~ 282 (1082)
++++|++++|++...++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+.. .+|+.
T Consensus 2 l~~~~l~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 81 (216)
T TIGR00960 2 IRFEQVSKAYPGGHQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGREIPFLRRH 81 (216)
T ss_pred eEEEEEEEEecCCCeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcChhHHHHHHHh
Confidence 689999999974323599999999999999999999999999999999999999999999999998765533 46788
Q ss_pred ceEEccCCCcChh-cHHHHHhcCCCC--C----CHHHHHHHHHHhchHHHHhcCCCCccccccCCCCCCChHHHHHHHHH
Q 001411 283 MGLVSQEPALFAT-SIANNILLGKED--A----SMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIA 355 (1082)
Q Consensus 283 i~~v~Q~~~l~~~-ti~~ni~~g~~~--~----~~~~~~~~~~~~~~~~~i~~lp~g~~t~~g~~g~~LSgGqkqri~lA 355 (1082)
++|++|++.+|.. |++||+.++... . ..+++.++++..++.+... ....+||||||||++||
T Consensus 82 i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LSgG~~qrv~la 150 (216)
T TIGR00960 82 IGMVFQDHRLLSDRTVYDNVAFPLRIIGVPPRDANERVSAALEKVGLEGKAH-----------ALPMQLSGGEQQRVAIA 150 (216)
T ss_pred ceEEecCccccccccHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhh-----------CChhhCCHHHHHHHHHH
Confidence 9999999998875 999999875211 1 1234455555555544333 33458999999999999
Q ss_pred HhcccCCCeeEEeCcccCCCHHHHHHHHHHHHHHc-CCCeEEEEccCcccccc-CCEEEEEeCCEE
Q 001411 356 RAVLRNPKILLLDEATSALDAESELIVQRALEKIM-SNRTTIVVAHRLSTVRD-VDTIMVLKNGQV 419 (1082)
Q Consensus 356 Ral~~~~~illlDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~vtH~~~~~~~-~d~i~~l~~G~i 419 (1082)
|||+.+|+++||||||++||+.+.+.+.+.|.++. +++|+|+|||+++.+.. ||++++|++|++
T Consensus 151 ral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i 216 (216)
T TIGR00960 151 RAIVHKPPLLLADEPTGNLDPELSRDIMRLFEEFNRRGTTVLVATHDINLVETYRHRTLTLSRGRL 216 (216)
T ss_pred HHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 99999999999999999999999999999998874 47899999999999875 899999999974
|
|
| >PRK13537 nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-42 Score=383.84 Aligned_cols=213 Identities=27% Similarity=0.496 Sum_probs=183.0
Q ss_pred cEEEEeEEEECCCCCCcccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCccCCCCCHHHHhcce
Q 001411 834 NIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRKI 913 (1082)
Q Consensus 834 ~I~~~~Vs~~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR~~i 913 (1082)
.|+++||+++|+ +..+|+||||+|++||++||+||||||||||+++|+|+++|++|+|.|+|.|+...+ ...|++|
T Consensus 7 ~i~i~~l~k~~~---~~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~~-~~~~~~i 82 (306)
T PRK13537 7 PIDFRNVEKRYG---DKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRA-RHARQRV 82 (306)
T ss_pred eEEEEeEEEEEC---CeEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccch-HHHHhcE
Confidence 599999999996 346999999999999999999999999999999999999999999999999997754 4578999
Q ss_pred EEEcccCcccc-ccHHHHhccCCC--CCCHHH----HHHHHHHhcHHHHHhhCcccccccccCCCCCCChhHHHHHHHHH
Q 001411 914 GLVQQEPALFS-TTIYENIKYGNE--DASEIE----LMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIAR 986 (1082)
Q Consensus 914 ~~VpQdp~Lf~-gTIreNl~~~~~--~~~d~e----i~~al~~a~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlaLAR 986 (1082)
+|+||++.+|. .|++||+.+... ..+..+ +.++++..++ ++..++++ .+||||||||++|||
T Consensus 83 g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l-------~~~~~~~~----~~LS~G~~qrl~la~ 151 (306)
T PRK13537 83 GVVPQFDNLDPDFTVRENLLVFGRYFGLSAAAARALVPPLLEFAKL-------ENKADAKV----GELSGGMKRRLTLAR 151 (306)
T ss_pred EEEeccCcCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-------chHhcCch----hhCCHHHHHHHHHHH
Confidence 99999999886 699999985321 122222 2233333333 33445555 469999999999999
Q ss_pred HHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEecCchhhhc-cCEEEEEeCCEEEEecChHHHhhh
Q 001411 987 AILKNPSILLLDEATSALDTASENLIQEALDKLM-EGRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGSHEQLLRK 1061 (1082)
Q Consensus 987 AlL~~~~ILlLDEaTS~LD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~G~~~eLl~~ 1061 (1082)
||+++|++|+|||||++||+.+.+.+++.|++.. +++|+|++||+++.+.. ||||++|++|++++.|+++++.+.
T Consensus 152 aL~~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~till~sH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~~~ 228 (306)
T PRK13537 152 ALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFMEEAERLCDRLCVIEEGRKIAEGAPHALIES 228 (306)
T ss_pred HHhCCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhc
Confidence 9999999999999999999999999999999875 47899999999999966 999999999999999999999754
|
|
| >PRK14262 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-42 Score=374.87 Aligned_cols=227 Identities=31% Similarity=0.523 Sum_probs=190.4
Q ss_pred cEEEEeEEEECCCCCCcccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccC-----CccEEEECCccCCCC--CH
Q 001411 834 NIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDP-----ISGTVLIDGYDIRTL--NL 906 (1082)
Q Consensus 834 ~I~~~~Vs~~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p-----~~G~I~idG~di~~i--~~ 906 (1082)
.|+++||+++|+ +.++|+|+||+|++||++||+|+||||||||+++|.|+++| ++|+|.+||.++... +.
T Consensus 3 ~l~~~~l~~~~~---~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~~ 79 (250)
T PRK14262 3 IIEIENFSAYYG---EKKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDV 79 (250)
T ss_pred eEEEEeeEEEeC---CceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchhhH
Confidence 489999999996 34699999999999999999999999999999999999984 899999999998753 34
Q ss_pred HHHhcceEEEcccCccccccHHHHhccCCC---CC----CHHHHHHHHHHhcHHHHHhhCcccccccccCCCCCCChhHH
Q 001411 907 RSLRRKIGLVQQEPALFSTTIYENIKYGNE---DA----SEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQK 979 (1082)
Q Consensus 907 ~~lR~~i~~VpQdp~Lf~gTIreNl~~~~~---~~----~d~ei~~al~~a~l~~~i~~lp~gldt~v~e~G~~LSgGQr 979 (1082)
..+|++++|+||+|.+|+.|+++|+.++.. .. .++++.++++.+++.+.+. ........+||||||
T Consensus 80 ~~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~Gq~ 152 (250)
T PRK14262 80 TEYRKKVGMVFQKPTPFPMSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEVK-------SELNKPGTRLSGGQQ 152 (250)
T ss_pred HHhhhhEEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCchhH-------HHHhCChhhcCHHHH
Confidence 567889999999999999999999986421 11 1233555666666644332 223445678999999
Q ss_pred HHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhc-cCEEEEEeCCEEEEecChHHH
Q 001411 980 QRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLMEGRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGSHEQL 1058 (1082)
Q Consensus 980 QrlaLARAlL~~~~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~G~~~eL 1058 (1082)
||++||||++++|+||||||||++||+.+...+.+.|++..+++|+|+|||+++.+.. ||+|++|++|++++.|+++++
T Consensus 153 qr~~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tili~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 232 (250)
T PRK14262 153 QRLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSENYTIVIVTHNIGQAIRIADYIAFMYRGELIEYGPTREI 232 (250)
T ss_pred HHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHH
Confidence 9999999999999999999999999999999999999988778999999999998755 999999999999999999999
Q ss_pred hhhccchHHHHH
Q 001411 1059 LRKENGIYKQLI 1070 (1082)
Q Consensus 1059 l~~~~g~f~~l~ 1070 (1082)
.+++...|.+.+
T Consensus 233 ~~~~~~~~~~~~ 244 (250)
T PRK14262 233 VERPKNKLTEEY 244 (250)
T ss_pred HhCCCChHHHHH
Confidence 864434454443
|
|
| >cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-42 Score=364.65 Aligned_cols=203 Identities=27% Similarity=0.464 Sum_probs=178.6
Q ss_pred EEEEeEEEECCCCCCcccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCccCCCCCHHHHhcceE
Q 001411 835 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRKIG 914 (1082)
Q Consensus 835 I~~~~Vs~~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR~~i~ 914 (1082)
|+++||+++|+ +.++|+|+||+|++||.++|+|+||||||||+++|.|+++|++|+|.+||.++... ..+|++++
T Consensus 1 l~~~~l~~~~~---~~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~--~~~~~~i~ 75 (208)
T cd03268 1 LKTNDLTKTYG---KKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKN--IEALRRIG 75 (208)
T ss_pred CEEEEEEEEEC---CeEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccch--HHHHhhEE
Confidence 47899999996 34799999999999999999999999999999999999999999999999998764 56788999
Q ss_pred EEcccCccc-cccHHHHhccCC--CCCCHHHHHHHHHHhcHHHHHhhCcccccccccCCCCCCChhHHHHHHHHHHHccC
Q 001411 915 LVQQEPALF-STTIYENIKYGN--EDASEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKN 991 (1082)
Q Consensus 915 ~VpQdp~Lf-~gTIreNl~~~~--~~~~d~ei~~al~~a~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlaLARAlL~~ 991 (1082)
|+||++.+| ..|++||+.++. ...+++++.++++..++.+...+ ....||||||||++||||++++
T Consensus 76 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrv~la~al~~~ 144 (208)
T cd03268 76 ALIEAPGFYPNLTARENLRLLARLLGIRKKRIDEVLDVVGLKDSAKK-----------KVKGFSLGMKQRLGIALALLGN 144 (208)
T ss_pred EecCCCccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHHhh-----------hHhhCCHHHHHHHHHHHHHhcC
Confidence 999999888 479999997642 12345667778888887665433 2357999999999999999999
Q ss_pred CCEEEeeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEecCchhhhc-cCEEEEEeCCEEEEec
Q 001411 992 PSILLLDEATSALDTASENLIQEALDKLM-EGRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIG 1053 (1082)
Q Consensus 992 ~~ILlLDEaTS~LD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~G 1053 (1082)
|++|||||||++||+.+.+.+.+.|++.. +++|+|++||+++.+.. ||++++|++|++++.|
T Consensus 145 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~g~i~~~g 208 (208)
T cd03268 145 PDLLILDEPTNGLDPDGIKELRELILSLRDQGITVLISSHLLSEIQKVADRIGIINKGKLIEEG 208 (208)
T ss_pred CCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEECCEEEecC
Confidence 99999999999999999999999999865 47899999999999865 9999999999999865
|
Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. |
| >PRK14256 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-42 Score=373.37 Aligned_cols=224 Identities=29% Similarity=0.501 Sum_probs=188.3
Q ss_pred cccEEEEeEEEECCCCCCcccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccc--C---CccEEEECCccCCCC--
Q 001411 832 KGNIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYD--P---ISGTVLIDGYDIRTL-- 904 (1082)
Q Consensus 832 ~g~I~~~~Vs~~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~--p---~~G~I~idG~di~~i-- 904 (1082)
+|.|+++|++++|+ +.++|+|+||+|++||.+||+|+||||||||+++|.|+++ | ++|+|.+||.++...
T Consensus 2 ~~~l~~~nl~~~~~---~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~ 78 (252)
T PRK14256 2 NNKVKLEQLNVHFG---KNHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGV 78 (252)
T ss_pred CcEEEEEEEEEEeC---CeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccC
Confidence 36799999999996 3469999999999999999999999999999999999986 4 689999999998653
Q ss_pred CHHHHhcceEEEcccCcccc-ccHHHHhccCCC--C-CC----HHHHHHHHHHhcHHHHHhhCcccccccccCCCCCCCh
Q 001411 905 NLRSLRRKIGLVQQEPALFS-TTIYENIKYGNE--D-AS----EIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSG 976 (1082)
Q Consensus 905 ~~~~lR~~i~~VpQdp~Lf~-gTIreNl~~~~~--~-~~----d~ei~~al~~a~l~~~i~~lp~gldt~v~e~G~~LSg 976 (1082)
....+|++++|+||++.+|. .|+++|+.++.. . .+ ++++.++++..++.+.+.. .....+.+|||
T Consensus 79 ~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LS~ 151 (252)
T PRK14256 79 DPVSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVKD-------RLKSNAMELSG 151 (252)
T ss_pred ChHHhhccEEEEecCCCCCCcCcHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhH-------HhhCCcCcCCH
Confidence 44578899999999999998 599999976421 1 11 2334555666665443321 22345678999
Q ss_pred hHHHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhc-cCEEEEEeCCEEEEecCh
Q 001411 977 GQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLMEGRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGSH 1055 (1082)
Q Consensus 977 GQrQrlaLARAlL~~~~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~G~~ 1055 (1082)
|||||++||||++++|++|||||||++||+.+.+.+.+.|++..++.|+|++||+++.+.. ||++++|++|+|++.|++
T Consensus 152 G~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~ 231 (252)
T PRK14256 152 GQQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKEKYTIIIVTHNMQQAARVSDYTAFFYMGDLVECGET 231 (252)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCcEEEEECCHHHHHhhCCEEEEEECCEEEEeCCH
Confidence 9999999999999999999999999999999999999999998777899999999999865 999999999999999999
Q ss_pred HHHhhhccch
Q 001411 1056 EQLLRKENGI 1065 (1082)
Q Consensus 1056 ~eLl~~~~g~ 1065 (1082)
+++...+...
T Consensus 232 ~~~~~~~~~~ 241 (252)
T PRK14256 232 KKIFTTPEKK 241 (252)
T ss_pred HHHHhCCCcH
Confidence 9998654443
|
|
| >PRK10070 glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-42 Score=391.66 Aligned_cols=205 Identities=36% Similarity=0.577 Sum_probs=176.9
Q ss_pred ccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCccCCCCCHHHH----hcceEEEcccCcccc-c
Q 001411 851 TIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSL----RRKIGLVQQEPALFS-T 925 (1082)
Q Consensus 851 ~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~l----R~~i~~VpQdp~Lf~-g 925 (1082)
++|+|+||+|++||+++|+|+||||||||+++|.|+++|++|+|.+||.++.+.+...+ |++++||||++.+|+ .
T Consensus 42 ~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~~ 121 (400)
T PRK10070 42 LGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHM 121 (400)
T ss_pred EEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCCC
Confidence 37999999999999999999999999999999999999999999999999998876554 468999999999997 5
Q ss_pred cHHHHhccCCC--CCC----HHHHHHHHHHhcHHHHHhhCcccccccccCCCCCCChhHHHHHHHHHHHccCCCEEEeeC
Q 001411 926 TIYENIKYGNE--DAS----EIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDE 999 (1082)
Q Consensus 926 TIreNl~~~~~--~~~----d~ei~~al~~a~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlaLARAlL~~~~ILlLDE 999 (1082)
|++||+.++.. ..+ ++++.++++.+++.++..+. ..+||||||||++|||||+.+|+||||||
T Consensus 122 Tv~enl~~~~~~~~~~~~~~~~~~~e~L~~~gL~~~~~~~-----------~~~LSgGq~QRv~LArAL~~~P~iLLLDE 190 (400)
T PRK10070 122 TVLDNTAFGMELAGINAEERREKALDALRQVGLENYAHSY-----------PDELSGGMRQRVGLARALAINPDILLMDE 190 (400)
T ss_pred CHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhcC-----------cccCCHHHHHHHHHHHHHhcCCCEEEEEC
Confidence 99999987421 112 23455666777665554443 35799999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHhc--CCceEEEEecCchhhhc-cCEEEEEeCCEEEEecChHHHhhhccchH
Q 001411 1000 ATSALDTASENLIQEALDKLM--EGRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGSHEQLLRKENGIY 1066 (1082)
Q Consensus 1000 aTS~LD~~te~~I~~~l~~~~--~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~G~~~eLl~~~~g~f 1066 (1082)
|||+||+.+.+.+++.|++.. .++|+|+|||+++.+.. ||+|++|++|++++.|+|++++.++...|
T Consensus 191 Pts~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~~~~~~~~Dri~vL~~G~i~~~g~~~~l~~~~~~~~ 260 (400)
T PRK10070 191 AFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLDEAMRIGDRIAIMQNGEVVQVGTPDEILNNPANDY 260 (400)
T ss_pred CCccCCHHHHHHHHHHHHHHHHHCCCeEEEEECCHHHHHHhCCEEEEEECCEEEecCCHHHHHhCcccHH
Confidence 999999999999999999874 37899999999999865 99999999999999999999987554434
|
|
| >PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-42 Score=375.05 Aligned_cols=218 Identities=32% Similarity=0.513 Sum_probs=184.7
Q ss_pred cccEEEEeEEEECCCCCCcccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCccCCCC-------
Q 001411 832 KGNIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTL------- 904 (1082)
Q Consensus 832 ~g~I~~~~Vs~~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i------- 904 (1082)
.+.|+++||+++|+ +.++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++..+
T Consensus 3 ~~~l~~~~l~~~~~---~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~ 79 (257)
T PRK10619 3 ENKLNVIDLHKRYG---EHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQL 79 (257)
T ss_pred CccEEEeeeEEEEC---CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEccccccccccc
Confidence 35699999999996 34699999999999999999999999999999999999999999999999988642
Q ss_pred ------CHHHHhcceEEEcccCccccc-cHHHHhccCC---CCCC----HHHHHHHHHHhcHHHHHhhCcccccccccCC
Q 001411 905 ------NLRSLRRKIGLVQQEPALFST-TIYENIKYGN---EDAS----EIELMKATKAANAHGFISRMPEGYQSHVGDR 970 (1082)
Q Consensus 905 ------~~~~lR~~i~~VpQdp~Lf~g-TIreNl~~~~---~~~~----d~ei~~al~~a~l~~~i~~lp~gldt~v~e~ 970 (1082)
....+|++++||||++.+|+. |++||+.++. .... ++++.++++..++.+.. ....
T Consensus 80 ~~~~~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~----------~~~~ 149 (257)
T PRK10619 80 KVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERA----------QGKY 149 (257)
T ss_pred ccccchHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChhh----------hhCC
Confidence 134678899999999999974 9999997531 1112 22344455555443322 1344
Q ss_pred CCCCChhHHHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEecCchhhhc-cCEEEEEeCCE
Q 001411 971 GVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLM-EGRTTIMVAHRLSTIRN-ADKIAVLQQGK 1048 (1082)
Q Consensus 971 G~~LSgGQrQrlaLARAlL~~~~ILlLDEaTS~LD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ 1048 (1082)
...||||||||++|||||+++|++|||||||++||+.+.+.+.+.|++.. +++|+|+|||+++.+.. ||||++|++|+
T Consensus 150 ~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~ 229 (257)
T PRK10619 150 PVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGK 229 (257)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCE
Confidence 56899999999999999999999999999999999999999999999875 48999999999999986 99999999999
Q ss_pred EEEecChHHHhhhc
Q 001411 1049 VAEIGSHEQLLRKE 1062 (1082)
Q Consensus 1049 ive~G~~~eLl~~~ 1062 (1082)
+++.|+++++.+.+
T Consensus 230 i~~~~~~~~~~~~~ 243 (257)
T PRK10619 230 IEEEGAPEQLFGNP 243 (257)
T ss_pred EEEeCCHHHhhhCc
Confidence 99999999997643
|
|
| >PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-42 Score=378.63 Aligned_cols=216 Identities=31% Similarity=0.532 Sum_probs=187.2
Q ss_pred cEEEEEEEEECCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHHhCCCCCCcEEEECCeeCCCCCHHHHhhhce
Q 001411 205 QIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMG 284 (1082)
Q Consensus 205 ~i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 284 (1082)
.++++||+++|++...++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+...+++.|+
T Consensus 5 ~l~~~~l~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~~~~~~~~~i~ 84 (279)
T PRK13635 5 IIRVEHISFRYPDAATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVRRQVG 84 (279)
T ss_pred eEEEEEEEEEeCCCCccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHhhheE
Confidence 48999999999753445999999999999999999999999999999999999999999999999998877777888999
Q ss_pred EEccCC--CcChhcHHHHHhcCCCC--CCH----HHHHHHHHHhchHHHHhcCCCCccccccCCCCCCChHHHHHHHHHH
Q 001411 285 LVSQEP--ALFATSIANNILLGKED--ASM----DRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIAR 356 (1082)
Q Consensus 285 ~v~Q~~--~l~~~ti~~ni~~g~~~--~~~----~~~~~~~~~~~~~~~i~~lp~g~~t~~g~~g~~LSgGqkqri~lAR 356 (1082)
|++|++ .+++.|++|||.++... .+. +++.++++..++.+++... ...||||||||++|||
T Consensus 85 ~~~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~-----------~~~LS~G~~qrv~lar 153 (279)
T PRK13635 85 MVFQNPDNQFVGATVQDDVAFGLENIGVPREEMVERVDQALRQVGMEDFLNRE-----------PHRLSGGQKQRVAIAG 153 (279)
T ss_pred EEEeCHHHhcccccHHHHHhhhHhhCCCCHHHHHHHHHHHHHHcCChhhhhCC-----------cccCCHHHHHHHHHHH
Confidence 999998 45677999999886321 122 3345555555555554444 3589999999999999
Q ss_pred hcccCCCeeEEeCcccCCCHHHHHHHHHHHHHHcC--CCeEEEEccCccccccCCEEEEEeCCEEEEecCchhhhhc
Q 001411 357 AVLRNPKILLLDEATSALDAESELIVQRALEKIMS--NRTTIVVAHRLSTVRDVDTIMVLKNGQVVESGTHVDLISK 431 (1082)
Q Consensus 357 al~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~vtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~ 431 (1082)
||+.+|+++||||||++||+.+...+.+.|.++.+ ++|+|++||+++.+..||+|++|++|++++.|+++++.+.
T Consensus 154 al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 230 (279)
T PRK13635 154 VLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLDEAAQADRVIVMNKGEILEEGTPEEIFKS 230 (279)
T ss_pred HHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHhcC
Confidence 99999999999999999999999999999998764 6899999999999888999999999999999999888664
|
|
| >cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-42 Score=373.60 Aligned_cols=221 Identities=27% Similarity=0.509 Sum_probs=183.7
Q ss_pred EEEEEEEEECCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHHhCCCCCCcEEEECCeeCCCCCHHHH-hhhce
Q 001411 206 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWL-REQMG 284 (1082)
Q Consensus 206 i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~-~~~i~ 284 (1082)
++++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+ +..++
T Consensus 1 l~~~~l~~~~~~--~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~ 78 (236)
T cd03219 1 LEVRGLTKRFGG--LVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLGIG 78 (236)
T ss_pred CeeeeeEEEECC--EEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECCCCCHHHHHhcCEE
Confidence 468999999974 349999999999999999999999999999999999999999999999999987776554 56799
Q ss_pred EEccCCCcChh-cHHHHHhcCCCCCCHHHH-------HHHHHHhchHHHHhcCCCCccccccCCCCCCChHHHHHHHHHH
Q 001411 285 LVSQEPALFAT-SIANNILLGKEDASMDRV-------IEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIAR 356 (1082)
Q Consensus 285 ~v~Q~~~l~~~-ti~~ni~~g~~~~~~~~~-------~~~~~~~~~~~~i~~lp~g~~t~~g~~g~~LSgGqkqri~lAR 356 (1082)
|++|++.+|+. |++||+.++........+ ........+++.++.+ |++...+....+||||||||++|||
T Consensus 79 ~v~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~LSgG~~qrv~la~ 156 (236)
T cd03219 79 RTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERV--GLADLADRPAGELSYGQQRRLEIAR 156 (236)
T ss_pred EEecccccccCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHc--CccchhhCChhhCCHHHHHHHHHHH
Confidence 99999999887 999999876432110000 0000111223444444 5666667777899999999999999
Q ss_pred hcccCCCeeEEeCcccCCCHHHHHHHHHHHHHHc-CCCeEEEEccCcccccc-CCEEEEEeCCEEEEecCchhhhh
Q 001411 357 AVLRNPKILLLDEATSALDAESELIVQRALEKIM-SNRTTIVVAHRLSTVRD-VDTIMVLKNGQVVESGTHVDLIS 430 (1082)
Q Consensus 357 al~~~~~illlDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~ 430 (1082)
||+.+|+++||||||++||+.+.+.+.+.|+++. +++|+|++||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 157 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 232 (236)
T cd03219 157 ALATDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMDVVMSLADRVTVLDQGRVIAEGTPDEVRN 232 (236)
T ss_pred HHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEeCCEEEeecCHHHhcc
Confidence 9999999999999999999999999999999875 57899999999999865 89999999999999999888754
|
MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). |
| >cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-42 Score=369.25 Aligned_cols=204 Identities=35% Similarity=0.497 Sum_probs=172.1
Q ss_pred EEEEeEEEECCCCC-CcccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCccCCCCCHHH----H
Q 001411 835 IELRNVSFKYPVRP-DITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRS----L 909 (1082)
Q Consensus 835 I~~~~Vs~~Y~~~~-~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~----l 909 (1082)
|+++||+++|+... ..++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++...+... .
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~ 80 (218)
T cd03255 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFR 80 (218)
T ss_pred CeEeeeEEEecCCCcceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHHHHHH
Confidence 47899999996311 147999999999999999999999999999999999999999999999999998876432 4
Q ss_pred hcceEEEcccCccccc-cHHHHhccCCCC--CC----HHHHHHHHHHhcHHHHHhhCcccccccccCCCCCCChhHHHHH
Q 001411 910 RRKIGLVQQEPALFST-TIYENIKYGNED--AS----EIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRV 982 (1082)
Q Consensus 910 R~~i~~VpQdp~Lf~g-TIreNl~~~~~~--~~----d~ei~~al~~a~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrl 982 (1082)
|++++|+||+|.+|.+ |+++|+.++... .. ++++.++++..++.+ .......+||||||||+
T Consensus 81 ~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LS~G~~qrv 149 (218)
T cd03255 81 RRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKERRERAEELLERVGLGD-----------RLNHYPSELSGGQQQRV 149 (218)
T ss_pred hhcEEEEeeccccCCCCcHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCch-----------hhhcChhhcCHHHHHHH
Confidence 6789999999999986 999999874321 11 223444454444433 33344568999999999
Q ss_pred HHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHhcC--CceEEEEecCchhhhccCEEEEEeCCEE
Q 001411 983 AIARAILKNPSILLLDEATSALDTASENLIQEALDKLME--GRTTIMVAHRLSTIRNADKIAVLQQGKV 1049 (1082)
Q Consensus 983 aLARAlL~~~~ILlLDEaTS~LD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~~~DrI~Vl~~G~i 1049 (1082)
+|||||+++|++|||||||++||+.+.+.+.+.|++..+ ++|+|+|||+++.+..||+|++|++|++
T Consensus 150 ~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~d~v~~l~~G~i 218 (218)
T cd03255 150 AIARALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPELAEYADRIIELRDGKI 218 (218)
T ss_pred HHHHHHccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhcEEEEeeCCcC
Confidence 999999999999999999999999999999999998754 7899999999999888999999999974
|
They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. |
| >PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-42 Score=383.63 Aligned_cols=227 Identities=29% Similarity=0.477 Sum_probs=188.4
Q ss_pred cEEEEeEEEECCCCC-------CcccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCccCCCCCH
Q 001411 834 NIELRNVSFKYPVRP-------DITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNL 906 (1082)
Q Consensus 834 ~I~~~~Vs~~Y~~~~-------~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~ 906 (1082)
-|+++|++++|+.+. ..++|+||||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.|+.+++.
T Consensus 5 ~l~v~nl~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~~~g~~l~~~~~ 84 (327)
T PRK11308 5 LLQAIDLKKHYPVKRGLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKADP 84 (327)
T ss_pred eEEEeeeEEEEcCCCCccccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCCCcEEEECCEEcCcCCH
Confidence 489999999996321 2469999999999999999999999999999999999999999999999999988875
Q ss_pred H---HHhcceEEEcccCc--ccc-ccHHHHhccC---CCCCC----HHHHHHHHHHhcHHHHHhhCcccccccccCCCCC
Q 001411 907 R---SLRRKIGLVQQEPA--LFS-TTIYENIKYG---NEDAS----EIELMKATKAANAHGFISRMPEGYQSHVGDRGVQ 973 (1082)
Q Consensus 907 ~---~lR~~i~~VpQdp~--Lf~-gTIreNl~~~---~~~~~----d~ei~~al~~a~l~~~i~~lp~gldt~v~e~G~~ 973 (1082)
. .+|++|+||||+|. |++ -|+.+|+... ..... .+.+.++++.+++.+ ..++. ....
T Consensus 85 ~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~------~~~~~----~p~~ 154 (327)
T PRK11308 85 EAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINTSLSAAERREKALAMMAKVGLRP------EHYDR----YPHM 154 (327)
T ss_pred HHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHCCCCh------HHhcC----CCcc
Confidence 3 57889999999994 555 4898888531 11112 233555566666532 12333 3457
Q ss_pred CChhHHHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHhcC--CceEEEEecCchhhhc-cCEEEEEeCCEEE
Q 001411 974 LSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLME--GRTTIMVAHRLSTIRN-ADKIAVLQQGKVA 1050 (1082)
Q Consensus 974 LSgGQrQrlaLARAlL~~~~ILlLDEaTS~LD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~~-~DrI~Vl~~G~iv 1050 (1082)
||||||||++|||||+.+|++||+||||++||..+.+.|.+.|++..+ +.|+|+|||+++.+.. ||+|+||++|+|+
T Consensus 155 LSgGq~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~adrv~vm~~G~iv 234 (327)
T PRK11308 155 FSGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLSVVEHIADEVMVMYLGRCV 234 (327)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 999999999999999999999999999999999999999999998753 7899999999999975 9999999999999
Q ss_pred EecChHHHhhhccchHHHHH
Q 001411 1051 EIGSHEQLLRKENGIYKQLI 1070 (1082)
Q Consensus 1051 e~G~~~eLl~~~~g~f~~l~ 1070 (1082)
|.|+++++++++...|.+.+
T Consensus 235 e~g~~~~~~~~p~hpyt~~l 254 (327)
T PRK11308 235 EKGTKEQIFNNPRHPYTQAL 254 (327)
T ss_pred EECCHHHHhcCCCCHHHHHH
Confidence 99999999986655666543
|
|
| >PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-42 Score=390.01 Aligned_cols=213 Identities=32% Similarity=0.564 Sum_probs=185.6
Q ss_pred CcEEEEEEEEECCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHHhCCCCCCcEEEECCeeCCCCCHHHHhhhc
Q 001411 204 GQIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQM 283 (1082)
Q Consensus 204 ~~i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i 283 (1082)
..++++|++++|++ ..+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++...++. ++.|
T Consensus 13 ~~L~l~~l~~~~~~--~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~--~r~i 88 (375)
T PRK09452 13 PLVELRGISKSFDG--KEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPAE--NRHV 88 (375)
T ss_pred ceEEEEEEEEEECC--eEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHH--HCCE
Confidence 35999999999974 3489999999999999999999999999999999999999999999999999876654 4679
Q ss_pred eEEccCCCcChh-cHHHHHhcCCCCC--C----HHHHHHHHHHhchHHHHhcCCCCccccccCCCCCCChHHHHHHHHHH
Q 001411 284 GLVSQEPALFAT-SIANNILLGKEDA--S----MDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIAR 356 (1082)
Q Consensus 284 ~~v~Q~~~l~~~-ti~~ni~~g~~~~--~----~~~~~~~~~~~~~~~~i~~lp~g~~t~~g~~g~~LSgGqkqri~lAR 356 (1082)
+||+|++.+|+. ||+|||.|+.... + .+++.++++..++.++.++.| .+|||||||||+|||
T Consensus 89 g~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p-----------~~LSgGq~QRVaLAR 157 (375)
T PRK09452 89 NTVFQSYALFPHMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQLEEFAQRKP-----------HQLSGGQQQRVAIAR 157 (375)
T ss_pred EEEecCcccCCCCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhCCh-----------hhCCHHHHHHHHHHH
Confidence 999999999977 9999999874321 1 234555666666655555554 589999999999999
Q ss_pred hcccCCCeeEEeCcccCCCHHHHHHHHHHHHHHcC--CCeEEEEccCccccc-cCCEEEEEeCCEEEEecCchhhhhc
Q 001411 357 AVLRNPKILLLDEATSALDAESELIVQRALEKIMS--NRTTIVVAHRLSTVR-DVDTIMVLKNGQVVESGTHVDLISK 431 (1082)
Q Consensus 357 al~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~vtH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~~ 431 (1082)
||+.+|++||||||||+||+.++..+.+.|+++.+ +.|+|+|||+++.+. .||+|++|++|++++.|+++++..+
T Consensus 158 aL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~i~~~ 235 (375)
T PRK09452 158 AVVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRDGRIEQDGTPREIYEE 235 (375)
T ss_pred HHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 99999999999999999999999999999998753 789999999999865 5999999999999999999998765
|
|
| >PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-42 Score=376.80 Aligned_cols=213 Identities=33% Similarity=0.563 Sum_probs=184.2
Q ss_pred EEEEeEEEECCCCCCcccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCccCCCCC-HHHHhcce
Q 001411 835 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLN-LRSLRRKI 913 (1082)
Q Consensus 835 I~~~~Vs~~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~-~~~lR~~i 913 (1082)
|+++||+++|+. +.++|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.++...+ ...+++++
T Consensus 2 l~~~~l~~~~~~--~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i 79 (274)
T PRK13644 2 IRLENVSYSYPD--GTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRKLV 79 (274)
T ss_pred EEEEEEEEEcCC--CCceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEECCccccHHHHHhhe
Confidence 789999999962 346999999999999999999999999999999999999999999999999998775 46788999
Q ss_pred EEEcccCc--cccccHHHHhccCCCC--CC----HHHHHHHHHHhcHHHHHhhCcccccccccCCCCCCChhHHHHHHHH
Q 001411 914 GLVQQEPA--LFSTTIYENIKYGNED--AS----EIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIA 985 (1082)
Q Consensus 914 ~~VpQdp~--Lf~gTIreNl~~~~~~--~~----d~ei~~al~~a~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlaLA 985 (1082)
+|+||+|. +++.|+++|+.++... .+ ++.+.++++..++.++.. .....||||||||++||
T Consensus 80 ~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~-----------~~~~~LS~G~~qrv~la 148 (274)
T PRK13644 80 GIVFQNPETQFVGRTVEEDLAFGPENLCLPPIEIRKRVDRALAEIGLEKYRH-----------RSPKTLSGGQGQCVALA 148 (274)
T ss_pred EEEEEChhhhcccchHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhc-----------CCcccCCHHHHHHHHHH
Confidence 99999985 6678999999875321 22 233445555555544433 33467999999999999
Q ss_pred HHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEecCchhhhccCEEEEEeCCEEEEecChHHHhh
Q 001411 986 RAILKNPSILLLDEATSALDTASENLIQEALDKLM-EGRTTIMVAHRLSTIRNADKIAVLQQGKVAEIGSHEQLLR 1060 (1082)
Q Consensus 986 RAlL~~~~ILlLDEaTS~LD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~~~DrI~Vl~~G~ive~G~~~eLl~ 1060 (1082)
|||+++|+||||||||++||+.+...+.+.|++.. +++|+|++||+++.+..||+|++|++|++++.|+++++..
T Consensus 149 ral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~~tH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 224 (274)
T PRK13644 149 GILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHNLEELHDADRIIVMDRGKIVLEGEPENVLS 224 (274)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHhhCCEEEEEECCEEEEECCHHHHhc
Confidence 99999999999999999999999999999999865 4899999999999998899999999999999999999875
|
|
| >PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-42 Score=377.82 Aligned_cols=216 Identities=30% Similarity=0.508 Sum_probs=188.9
Q ss_pred ccEEEEeEEEECCCCCCcccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCc---cEEEECCccCCCCCHHHH
Q 001411 833 GNIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPIS---GTVLIDGYDIRTLNLRSL 909 (1082)
Q Consensus 833 g~I~~~~Vs~~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~---G~I~idG~di~~i~~~~l 909 (1082)
+.|+++|++++|+.. ..++|+|+||+|++||++||+|+||||||||+++|+|+++|++ |+|.+||.++...+...+
T Consensus 4 ~~l~i~~l~~~~~~~-~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~~ 82 (282)
T PRK13640 4 NIVEFKHVSFTYPDS-KKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDI 82 (282)
T ss_pred ceEEEEEEEEEcCCC-CccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHHH
Confidence 469999999999632 2469999999999999999999999999999999999999987 899999999988877788
Q ss_pred hcceEEEcccC--ccccccHHHHhccCCC--CCCH----HHHHHHHHHhcHHHHHhhCcccccccccCCCCCCChhHHHH
Q 001411 910 RRKIGLVQQEP--ALFSTTIYENIKYGNE--DASE----IELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQR 981 (1082)
Q Consensus 910 R~~i~~VpQdp--~Lf~gTIreNl~~~~~--~~~d----~ei~~al~~a~l~~~i~~lp~gldt~v~e~G~~LSgGQrQr 981 (1082)
|++++|+||+| .+++.|+++||.++.. ..+. +.+.++++.+++.++..+. ..+||||||||
T Consensus 83 ~~~ig~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~-----------~~~LS~G~~qr 151 (282)
T PRK13640 83 REKVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIKIVRDVLADVGMLDYIDSE-----------PANLSGGQKQR 151 (282)
T ss_pred HhheEEEEECHHHhhccCCHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCChhHhcCC-----------cccCCHHHHHH
Confidence 99999999998 4668899999986522 2233 2355667777776554443 36899999999
Q ss_pred HHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHhcC--CceEEEEecCchhhhccCEEEEEeCCEEEEecChHHHh
Q 001411 982 VAIARAILKNPSILLLDEATSALDTASENLIQEALDKLME--GRTTIMVAHRLSTIRNADKIAVLQQGKVAEIGSHEQLL 1059 (1082)
Q Consensus 982 laLARAlL~~~~ILlLDEaTS~LD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~~~DrI~Vl~~G~ive~G~~~eLl 1059 (1082)
++|||||+++|++|||||||++||+.+.+.+.+.|++..+ ++|||++||+++.+..||+|++|++|++++.|+++++.
T Consensus 152 v~laral~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 231 (282)
T PRK13640 152 VAIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDEANMADQVLVLDDGKLLAQGSPVEIF 231 (282)
T ss_pred HHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 9999999999999999999999999999999999998753 78999999999999889999999999999999999987
Q ss_pred h
Q 001411 1060 R 1060 (1082)
Q Consensus 1060 ~ 1060 (1082)
.
T Consensus 232 ~ 232 (282)
T PRK13640 232 S 232 (282)
T ss_pred c
Confidence 5
|
|
| >PRK14269 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-42 Score=373.62 Aligned_cols=218 Identities=28% Similarity=0.465 Sum_probs=185.6
Q ss_pred cEEEEEEEEECCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHHhCCC---CCCcEEEECCeeCCCCCHHHHhh
Q 001411 205 QIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYE---PTSGKILLDGHDLKSLQLKWLRE 281 (1082)
Q Consensus 205 ~i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~---~~~G~i~~~g~~~~~~~~~~~~~ 281 (1082)
.++++|+++.|++ ..+|+|+||++++||+++|+||||||||||+++|+|+++ |++|+|.++|+++...+...+|+
T Consensus 2 ~~~~~~l~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~~ 79 (246)
T PRK14269 2 IAKTTNLNLFYGK--KQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRK 79 (246)
T ss_pred ceeeeeeEEEECC--EeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHhh
Confidence 3789999999974 349999999999999999999999999999999999984 79999999999998877778888
Q ss_pred hceEEccCCCcChhcHHHHHhcCCCCC--------CHHHHHHHHHHhchHHHHhcCCCCccccccCCCCCCChHHHHHHH
Q 001411 282 QMGLVSQEPALFATSIANNILLGKEDA--------SMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIA 353 (1082)
Q Consensus 282 ~i~~v~Q~~~l~~~ti~~ni~~g~~~~--------~~~~~~~~~~~~~~~~~i~~lp~g~~t~~g~~g~~LSgGqkqri~ 353 (1082)
.++|++|++.+|+.|++||+.++.... ..+++.++++..++.+++ .+...+.+.+||||||||++
T Consensus 80 ~i~~~~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LS~G~~qrv~ 152 (246)
T PRK14269 80 NVGMVFQQPNVFVKSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEV-------KDKLKQNALALSGGQQQRLC 152 (246)
T ss_pred hEEEEecCCccccccHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhh-------hHHhcCCcccCCHHHHHHHH
Confidence 999999999999999999998763110 112233344444433222 22345667899999999999
Q ss_pred HHHhcccCCCeeEEeCcccCCCHHHHHHHHHHHHHHcCCCeEEEEccCccccc-cCCEEEEEeCCEEEEecCchhhhhc
Q 001411 354 IARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVR-DVDTIMVLKNGQVVESGTHVDLISK 431 (1082)
Q Consensus 354 lARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~vtH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~~ 431 (1082)
|||||+++|+++||||||++||+.+...+.+.|.++.+++|+|++||+++.+. .||++++|++|++++.|+++++...
T Consensus 153 laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 231 (246)
T PRK14269 153 IARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSHNLSMIMVTHNMQQGKRVADYTAFFHLGELIEFGESKEFFEN 231 (246)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhhCcEEEEEECCEEEEECCHHHHHhC
Confidence 99999999999999999999999999999999998877899999999999876 5899999999999999999888653
|
|
| >cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-41 Score=360.36 Aligned_cols=203 Identities=36% Similarity=0.625 Sum_probs=179.6
Q ss_pred CcEEEEEEEEECCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHHhCCCCCCcEEEECCeeCCCCCHHHHhhhc
Q 001411 204 GQIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQM 283 (1082)
Q Consensus 204 ~~i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i 283 (1082)
+.++++|++++|++...++++|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.++...+...+++.|
T Consensus 5 ~~l~~~~l~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i 84 (207)
T cd03369 5 GEIEVENLSVRYAPDLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDLRSSL 84 (207)
T ss_pred CeEEEEEEEEEeCCCCcccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhHHCCHHHHHhhE
Confidence 46999999999975333599999999999999999999999999999999999999999999999999877777888899
Q ss_pred eEEccCCCcChhcHHHHHhcCCCCCCHHHHHHHHHHhchHHHHhcCCCCccccccCCCCCCChHHHHHHHHHHhcccCCC
Q 001411 284 GLVSQEPALFATSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPK 363 (1082)
Q Consensus 284 ~~v~Q~~~l~~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~lp~g~~t~~g~~g~~LSgGqkqri~lARal~~~~~ 363 (1082)
+||+|+|.+|++|++||+.+... ...+++.++++ ++.....|||||+||++||||++.+|+
T Consensus 85 ~~v~q~~~~~~~tv~~~l~~~~~-~~~~~~~~~l~------------------~~~~~~~LS~G~~qrv~laral~~~p~ 145 (207)
T cd03369 85 TIIPQDPTLFSGTIRSNLDPFDE-YSDEEIYGALR------------------VSEGGLNLSQGQRQLLCLARALLKRPR 145 (207)
T ss_pred EEEecCCcccCccHHHHhcccCC-CCHHHHHHHhh------------------ccCCCCcCCHHHHHHHHHHHHHhhCCC
Confidence 99999999999999999976542 23333333222 345667899999999999999999999
Q ss_pred eeEEeCcccCCCHHHHHHHHHHHHHHcCCCeEEEEccCccccccCCEEEEEeCCEEEEecCc
Q 001411 364 ILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRDVDTIMVLKNGQVVESGTH 425 (1082)
Q Consensus 364 illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~vtH~~~~~~~~d~i~~l~~G~i~~~g~~ 425 (1082)
++||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+..||++++|++|++++.|++
T Consensus 146 llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~th~~~~~~~~d~v~~l~~g~i~~~g~~ 207 (207)
T cd03369 146 VLVLDEATASIDYATDALIQKTIREEFTNSTILTIAHRLRTIIDYDKILVMDAGEVKEYDHP 207 (207)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCEEEecCCC
Confidence 99999999999999999999999988778999999999999878999999999999987753
|
NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. |
| >PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-41 Score=368.95 Aligned_cols=218 Identities=26% Similarity=0.417 Sum_probs=180.9
Q ss_pred cEEEEeEEEECCCCCCcccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCccCCCCCHHH-Hhcc
Q 001411 834 NIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRS-LRRK 912 (1082)
Q Consensus 834 ~I~~~~Vs~~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~-lR~~ 912 (1082)
.|+++||+++|+ +.++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+... +|+.
T Consensus 5 ~l~~~~l~~~~~---~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~ 81 (237)
T PRK11614 5 MLSFDKVSAHYG---KIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMREA 81 (237)
T ss_pred EEEEEeEEEeeC---CceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEecCCCCHHHHHHhC
Confidence 489999999996 346999999999999999999999999999999999999999999999999998887654 6788
Q ss_pred eEEEcccCccccc-cHHHHhccCCCCCCHHHHHHHHHHhcHHHHHhhCcccccccccCCCCCCChhHHHHHHHHHHHccC
Q 001411 913 IGLVQQEPALFST-TIYENIKYGNEDASEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKN 991 (1082)
Q Consensus 913 i~~VpQdp~Lf~g-TIreNl~~~~~~~~d~ei~~al~~a~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlaLARAlL~~ 991 (1082)
++|+||++.+|++ |+++|+.++....+..+..+.++ +.++.++ +++.........||||||||++||||++++
T Consensus 82 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~-----~~l~~~~-~l~~~~~~~~~~LS~G~~qrl~la~al~~~ 155 (237)
T PRK11614 82 VAIVPEGRRVFSRMTVEENLAMGGFFAERDQFQERIK-----WVYELFP-RLHERRIQRAGTMSGGEQQMLAIGRALMSQ 155 (237)
T ss_pred EEEeccCcccCCCCcHHHHHHHhhhccChhHHHHHHH-----HHHHHHH-HHHHHHhCchhhCCHHHHHHHHHHHHHHhC
Confidence 9999999999985 99999987532222222222111 1111111 111112234467999999999999999999
Q ss_pred CCEEEeeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEecCchhhhc-cCEEEEEeCCEEEEecChHHHhh
Q 001411 992 PSILLLDEATSALDTASENLIQEALDKLM-EGRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGSHEQLLR 1060 (1082)
Q Consensus 992 ~~ILlLDEaTS~LD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~G~~~eLl~ 1060 (1082)
|+||||||||++||+.+.+.+.+.|++.. +++|+|++||+++.+.. ||++++|++|++++.|+++++..
T Consensus 156 p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 226 (237)
T PRK11614 156 PRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNANQALKLADRGYVLENGHVVLEDTGDALLA 226 (237)
T ss_pred CCEEEEcCccccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHhhCCEEEEEeCCEEEeeCCHHHHhc
Confidence 99999999999999999999999999865 48999999999998754 99999999999999999999975
|
|
| >PRK14249 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-41 Score=371.94 Aligned_cols=218 Identities=30% Similarity=0.552 Sum_probs=186.7
Q ss_pred cEEEEeEEEECCCCCCcccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCC-----ccEEEECCccCCCC--CH
Q 001411 834 NIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPI-----SGTVLIDGYDIRTL--NL 906 (1082)
Q Consensus 834 ~I~~~~Vs~~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~-----~G~I~idG~di~~i--~~ 906 (1082)
.|+++||+++|+ +.++|+|+||+|++||++||+|+||||||||+++|.|+++|+ +|+|.+||.++... +.
T Consensus 4 ~l~~~~l~~~~~---~~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~ 80 (251)
T PRK14249 4 KIKIRGVNFFYH---KHQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLDV 80 (251)
T ss_pred eEEEEEEEEEEC---CeeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccccccCh
Confidence 589999999996 346999999999999999999999999999999999999997 69999999998653 45
Q ss_pred HHHhcceEEEcccCccccccHHHHhccCCC--CC-C----HHHHHHHHHHhcHHHHHhhCcccccccccCCCCCCChhHH
Q 001411 907 RSLRRKIGLVQQEPALFSTTIYENIKYGNE--DA-S----EIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQK 979 (1082)
Q Consensus 907 ~~lR~~i~~VpQdp~Lf~gTIreNl~~~~~--~~-~----d~ei~~al~~a~l~~~i~~lp~gldt~v~e~G~~LSgGQr 979 (1082)
..+|+.++||||+|.+|+.|+++|+.++.. .. . ++.+.++++..++++.+. ......+.+||||||
T Consensus 81 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~~~~~LS~Gq~ 153 (251)
T PRK14249 81 VNLRKRVGMVFQQPNPFPKSIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEVK-------DNLHKSGLALSGGQQ 153 (251)
T ss_pred HHhhceEEEEecCCccCcCcHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCCchhhh-------hHhhCCcccCCHHHH
Confidence 678999999999999999999999987421 11 1 123444555555544332 234456678999999
Q ss_pred HHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhc-cCEEEEEeCCEEEEecChHHH
Q 001411 980 QRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLMEGRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGSHEQL 1058 (1082)
Q Consensus 980 QrlaLARAlL~~~~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~G~~~eL 1058 (1082)
||++|||||+++|++|||||||++||+.+...+.+.|++..+++|+|+|||+++.+.. ||+|++|++|++++.|+++++
T Consensus 154 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tilivsh~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 233 (251)
T PRK14249 154 QRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELKQNYTIAIVTHNMQQAARASDWTGFLLTGDLVEYGRTGEI 233 (251)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhCCEEEEEeCCeEEEeCCHHHH
Confidence 9999999999999999999999999999999999999987667999999999999976 899999999999999999998
Q ss_pred hhh
Q 001411 1059 LRK 1061 (1082)
Q Consensus 1059 l~~ 1061 (1082)
...
T Consensus 234 ~~~ 236 (251)
T PRK14249 234 FSR 236 (251)
T ss_pred HhC
Confidence 754
|
|
| >PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-42 Score=376.37 Aligned_cols=212 Identities=31% Similarity=0.563 Sum_probs=183.5
Q ss_pred cEEEEEEEEECCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHHhCCCCCCcEEEECCeeCCCCCHHHHhhhce
Q 001411 205 QIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMG 284 (1082)
Q Consensus 205 ~i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 284 (1082)
.++++|++|+|++. .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+..++++.|+
T Consensus 4 ~l~~~~l~~~~~~~-~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 82 (274)
T PRK13647 4 IIEVEDLHFRYKDG-TKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRSKVG 82 (274)
T ss_pred eEEEEEEEEEeCCC-CeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHhhEE
Confidence 48999999999632 34999999999999999999999999999999999999999999999999998877788888999
Q ss_pred EEccCC--CcChhcHHHHHhcCCCC--CC----HHHHHHHHHHhchHHHHhcCCCCccccccCCCCCCChHHHHHHHHHH
Q 001411 285 LVSQEP--ALFATSIANNILLGKED--AS----MDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIAR 356 (1082)
Q Consensus 285 ~v~Q~~--~l~~~ti~~ni~~g~~~--~~----~~~~~~~~~~~~~~~~i~~lp~g~~t~~g~~g~~LSgGqkqri~lAR 356 (1082)
|++|+| .++..|+.||+.++... .+ .+++.++++..++.+...+.| ..||||||||++|||
T Consensus 83 ~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----------~~LSgG~~qrv~lar 151 (274)
T PRK13647 83 LVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMWDFRDKPP-----------YHLSYGQKKRVAIAG 151 (274)
T ss_pred EEecChhhhhccCcHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCCh-----------hhCCHHHHHHHHHHH
Confidence 999998 57888999999986321 11 134455555556555444443 489999999999999
Q ss_pred hcccCCCeeEEeCcccCCCHHHHHHHHHHHHHHc-CCCeEEEEccCccccc-cCCEEEEEeCCEEEEecCchhh
Q 001411 357 AVLRNPKILLLDEATSALDAESELIVQRALEKIM-SNRTTIVVAHRLSTVR-DVDTIMVLKNGQVVESGTHVDL 428 (1082)
Q Consensus 357 al~~~~~illlDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~vtH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l 428 (1082)
||+.+|++|||||||++||+.+...+.+.|+++. +++|+|++||+++.+. .||+|++|++|++++.|+++++
T Consensus 152 aL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 225 (274)
T PRK13647 152 VLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVDLAAEWADQVIVLKEGRVLAEGDKSLL 225 (274)
T ss_pred HHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHh
Confidence 9999999999999999999999999999999875 4789999999999985 5999999999999999998654
|
|
| >TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-42 Score=370.44 Aligned_cols=213 Identities=30% Similarity=0.470 Sum_probs=180.2
Q ss_pred EEEEeEEEECCCCCCcccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCccCCCCCHHH-Hhcce
Q 001411 835 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRS-LRRKI 913 (1082)
Q Consensus 835 I~~~~Vs~~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~-lR~~i 913 (1082)
|+++||+++|+ +.++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+... .++++
T Consensus 1 l~~~~l~~~~~---~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i 77 (230)
T TIGR03410 1 LEVSNLNVYYG---QSHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERARAGI 77 (230)
T ss_pred CEEEeEEEEeC---CeEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHHhCe
Confidence 47899999996 346999999999999999999999999999999999999999999999999998877654 46789
Q ss_pred EEEcccCccccc-cHHHHhccCCCCC--CHHH-HHHHHHHhcHHHHHhhCcccccccccCCCCCCChhHHHHHHHHHHHc
Q 001411 914 GLVQQEPALFST-TIYENIKYGNEDA--SEIE-LMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAIL 989 (1082)
Q Consensus 914 ~~VpQdp~Lf~g-TIreNl~~~~~~~--~d~e-i~~al~~a~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlaLARAlL 989 (1082)
+|+||++.+|+. |+++|+.++.... ..++ ..++++..+ +++........+||||||||++|||||+
T Consensus 78 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~----------~l~~~~~~~~~~LS~G~~qrv~la~al~ 147 (230)
T TIGR03410 78 AYVPQGREIFPRLTVEENLLTGLAALPRRSRKIPDEIYELFP----------VLKEMLGRRGGDLSGGQQQQLAIARALV 147 (230)
T ss_pred EEeccCCcccCCCcHHHHHHHHHHhcCcchHHHHHHHHHHHH----------hHHHHhhCChhhCCHHHHHHHHHHHHHh
Confidence 999999999986 9999998653221 1112 122222222 1222334455679999999999999999
Q ss_pred cCCCEEEeeCCCCCCCHHHHHHHHHHHHHhcC--CceEEEEecCchhhhc-cCEEEEEeCCEEEEecChHHHhh
Q 001411 990 KNPSILLLDEATSALDTASENLIQEALDKLME--GRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGSHEQLLR 1060 (1082)
Q Consensus 990 ~~~~ILlLDEaTS~LD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~G~~~eLl~ 1060 (1082)
++|++|||||||++||+.+.+.+.+.|++..+ ++|+|++||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 148 ~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~g~i~~~~~~~~~~~ 221 (230)
T TIGR03410 148 TRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLDFARELADRYYVMERGRVVASGAGDELDE 221 (230)
T ss_pred cCCCEEEecCCcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHcCh
Confidence 99999999999999999999999999998753 7899999999999975 99999999999999999999843
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >PRK14260 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-42 Score=374.07 Aligned_cols=221 Identities=32% Similarity=0.507 Sum_probs=188.2
Q ss_pred ccEEEEeEEEECCCCCCcccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccC-----CccEEEECCccCCC--CC
Q 001411 833 GNIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDP-----ISGTVLIDGYDIRT--LN 905 (1082)
Q Consensus 833 g~I~~~~Vs~~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p-----~~G~I~idG~di~~--i~ 905 (1082)
+.|+++||+++|+ +.++|+|+||+|++||++||+|+||||||||+++|.|+++| ++|+|.+||+++.. .+
T Consensus 6 ~~l~~~~l~~~~~---~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~ 82 (259)
T PRK14260 6 PAIKVKDLSFYYN---TSKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRIN 82 (259)
T ss_pred ceEEEEEEEEEEC---CeEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccccccc
Confidence 3599999999996 34699999999999999999999999999999999999985 48999999999864 44
Q ss_pred HHHHhcceEEEcccCccccccHHHHhccCCC------CCC-HHHHHHHHHHhcHHHHHhhCcccccccccCCCCCCChhH
Q 001411 906 LRSLRRKIGLVQQEPALFSTTIYENIKYGNE------DAS-EIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQ 978 (1082)
Q Consensus 906 ~~~lR~~i~~VpQdp~Lf~gTIreNl~~~~~------~~~-d~ei~~al~~a~l~~~i~~lp~gldt~v~e~G~~LSgGQ 978 (1082)
...+|++++|+||+|.+|+.|+++|+.++.. ... ++.+.++++.+++.+++.. .....+..|||||
T Consensus 83 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~-------~~~~~~~~LS~G~ 155 (259)
T PRK14260 83 INRLRRQIGMVFQRPNPFPMSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQEVKD-------KLNKSALGLSGGQ 155 (259)
T ss_pred hHhhhhheEEEecccccCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhh-------HhcCCcccCCHHH
Confidence 5678899999999999999999999976421 111 2335566777776554432 2234556799999
Q ss_pred HHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhc-cCEEEEEe-----CCEEEEe
Q 001411 979 KQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLMEGRTTIMVAHRLSTIRN-ADKIAVLQ-----QGKVAEI 1052 (1082)
Q Consensus 979 rQrlaLARAlL~~~~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~-~DrI~Vl~-----~G~ive~ 1052 (1082)
|||++|||||+++|++|||||||++||+.+.+.+.+.|++..+++|+|+|||+++.+.. ||++++|+ +|++++.
T Consensus 156 ~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~i~~~~d~i~~l~~~~~~~G~i~~~ 235 (259)
T PRK14260 156 QQRLCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLRSELTIAIVTHNMQQATRVSDFTAFFSTDESRIGQMVEF 235 (259)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCeEEEEeccCCCCceEEEe
Confidence 99999999999999999999999999999999999999998777899999999999965 99999998 5999999
Q ss_pred cChHHHhhhcc
Q 001411 1053 GSHEQLLRKEN 1063 (1082)
Q Consensus 1053 G~~~eLl~~~~ 1063 (1082)
|+++++.+.+.
T Consensus 236 ~~~~~~~~~~~ 246 (259)
T PRK14260 236 GVTTQIFSNPL 246 (259)
T ss_pred CCHHHHhcCCC
Confidence 99999976443
|
|
| >PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-42 Score=370.43 Aligned_cols=213 Identities=31% Similarity=0.537 Sum_probs=181.7
Q ss_pred EEEEeEEEECCCCCCcccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCccCCCCC--HHHHhcc
Q 001411 835 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLN--LRSLRRK 912 (1082)
Q Consensus 835 I~~~~Vs~~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~--~~~lR~~ 912 (1082)
|+++|++++|+ +.++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+ ...+|++
T Consensus 2 l~~~~l~~~~~---~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 78 (240)
T PRK09493 2 IEFKNVSKHFG---PTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLIRQE 78 (240)
T ss_pred EEEEeEEEEEC---CeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCChhHHHHhhc
Confidence 78999999996 346999999999999999999999999999999999999999999999999987643 4567889
Q ss_pred eEEEcccCcccc-ccHHHHhccCCC---CCCHH----HHHHHHHHhcHHHHHhhCcccccccccCCCCCCChhHHHHHHH
Q 001411 913 IGLVQQEPALFS-TTIYENIKYGNE---DASEI----ELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAI 984 (1082)
Q Consensus 913 i~~VpQdp~Lf~-gTIreNl~~~~~---~~~d~----ei~~al~~a~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlaL 984 (1082)
++|+||++.+|. .|+++|+.++.. ..+.. .+.++++..+ ++.........||||||||++|
T Consensus 79 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g-----------l~~~~~~~~~~LS~G~~qrv~l 147 (240)
T PRK09493 79 AGMVFQQFYLFPHLTALENVMFGPLRVRGASKEEAEKQARELLAKVG-----------LAERAHHYPSELSGGQQQRVAI 147 (240)
T ss_pred eEEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcC-----------ChHHHhcChhhcCHHHHHHHHH
Confidence 999999999886 599999986421 11222 2333344433 4333444556899999999999
Q ss_pred HHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEecCchhhhc-cCEEEEEeCCEEEEecChHHHhhh
Q 001411 985 ARAILKNPSILLLDEATSALDTASENLIQEALDKLM-EGRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGSHEQLLRK 1061 (1082)
Q Consensus 985 ARAlL~~~~ILlLDEaTS~LD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~G~~~eLl~~ 1061 (1082)
|||++++|++|||||||++||+++.+.+.+.|++.. +++|+|+|||+++.+.. ||+|++|++|++++.|+++++++.
T Consensus 148 a~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 226 (240)
T PRK09493 148 ARALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIGFAEKVASRLIFIDKGRIAEDGDPQVLIKN 226 (240)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeeCCHHHHhcC
Confidence 999999999999999999999999999999999875 47899999999999965 999999999999999999998753
|
|
| >PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-42 Score=373.69 Aligned_cols=221 Identities=28% Similarity=0.480 Sum_probs=190.4
Q ss_pred EEEEeEEEECCCCCCcccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCccCCCCCHHHHhcceE
Q 001411 835 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRKIG 914 (1082)
Q Consensus 835 I~~~~Vs~~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR~~i~ 914 (1082)
|+++|++++|+ +.++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++..++...+++.++
T Consensus 3 l~~~~l~~~~~---~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (255)
T PRK11231 3 LRTENLTVGYG---TKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLARRLA 79 (255)
T ss_pred EEEEeEEEEEC---CEEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCcEEEECCEEhHHCCHHHHhhheE
Confidence 78999999996 357999999999999999999999999999999999999999999999999998888888889999
Q ss_pred EEcccCccccc-cHHHHhccCCCC----------CCHHHHHHHHHHhcHHHHHhhCcccccccccCCCCCCChhHHHHHH
Q 001411 915 LVQQEPALFST-TIYENIKYGNED----------ASEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVA 983 (1082)
Q Consensus 915 ~VpQdp~Lf~g-TIreNl~~~~~~----------~~d~ei~~al~~a~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrla 983 (1082)
|+||++.+|.+ |+.+|+.++... ..++++.++++..++.+... .....||||||||++
T Consensus 80 ~~~q~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrv~ 148 (255)
T PRK11231 80 LLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLAD-----------RRLTDLSGGQRQRAF 148 (255)
T ss_pred EecccCCCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHc-----------CCcccCCHHHHHHHH
Confidence 99999998876 999999875211 11234556666666654432 234679999999999
Q ss_pred HHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEecCchhhhc-cCEEEEEeCCEEEEecChHHHhhh
Q 001411 984 IARAILKNPSILLLDEATSALDTASENLIQEALDKLM-EGRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGSHEQLLRK 1061 (1082)
Q Consensus 984 LARAlL~~~~ILlLDEaTS~LD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~G~~~eLl~~ 1061 (1082)
||||++++|++|||||||++||+++.+.+.+.|++.. +++|+|++||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 149 laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~- 227 (255)
T PRK11231 149 LAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDLNQASRYCDHLVVLANGHVMAQGTPEEVMT- 227 (255)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHhcCEEEEEECCeEEEEcCHHHhcC-
Confidence 9999999999999999999999999999999999865 47899999999999865 99999999999999999999875
Q ss_pred ccchHHHHHH
Q 001411 1062 ENGIYKQLIR 1071 (1082)
Q Consensus 1062 ~~g~f~~l~~ 1071 (1082)
...+.+.+.
T Consensus 228 -~~~~~~~~~ 236 (255)
T PRK11231 228 -PGLLRTVFD 236 (255)
T ss_pred -HHHHHHHhC
Confidence 244555553
|
|
| >cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-42 Score=365.45 Aligned_cols=203 Identities=34% Similarity=0.623 Sum_probs=173.9
Q ss_pred EEEEeEEEECCCCCCcccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCccCCCCCHHHHhcceE
Q 001411 835 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRKIG 914 (1082)
Q Consensus 835 I~~~~Vs~~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR~~i~ 914 (1082)
|+++|++++|+ +.++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+.. +++++
T Consensus 1 i~~~~l~~~~~---~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~~~~~~--~~~i~ 75 (213)
T cd03301 1 VELENVTKRFG---NVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPK--DRDIA 75 (213)
T ss_pred CEEEeeEEEEC---CeeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCcc--cceEE
Confidence 57899999996 34699999999999999999999999999999999999999999999999998766543 56899
Q ss_pred EEcccCcccc-ccHHHHhccCCC--CCC----HHHHHHHHHHhcHHHHHhhCcccccccccCCCCCCChhHHHHHHHHHH
Q 001411 915 LVQQEPALFS-TTIYENIKYGNE--DAS----EIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARA 987 (1082)
Q Consensus 915 ~VpQdp~Lf~-gTIreNl~~~~~--~~~----d~ei~~al~~a~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlaLARA 987 (1082)
|+||++.+|. .|+++|+.++.. ..+ ++++.++++..++.++..+ ....||||||||++||||
T Consensus 76 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qr~~lara 144 (213)
T cd03301 76 MVFQNYALYPHMTVYDNIAFGLKLRKVPKDEIDERVREVAELLQIEHLLDR-----------KPKQLSGGQRQRVALGRA 144 (213)
T ss_pred EEecChhhccCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHHhC-----------ChhhCCHHHHHHHHHHHH
Confidence 9999999885 699999986421 112 2234455666665544333 336799999999999999
Q ss_pred HccCCCEEEeeCCCCCCCHHHHHHHHHHHHHhc--CCceEEEEecCchhhhc-cCEEEEEeCCEEEEec
Q 001411 988 ILKNPSILLLDEATSALDTASENLIQEALDKLM--EGRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIG 1053 (1082)
Q Consensus 988 lL~~~~ILlLDEaTS~LD~~te~~I~~~l~~~~--~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~G 1053 (1082)
++++|++|||||||++||+.+.+.+.+.|++.. .++|+|+|||+++.+.. ||+|++|++|+++++|
T Consensus 145 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~g~~~~~g 213 (213)
T cd03301 145 IVREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQVEAMTMADRIAVMNDGQIQQIG 213 (213)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEecC
Confidence 999999999999999999999999999999875 37899999999999876 9999999999999876
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. |
| >cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-42 Score=353.44 Aligned_cols=178 Identities=37% Similarity=0.661 Sum_probs=166.0
Q ss_pred EEEEeEEEECCCCCCcccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCccCCCCCHHHHhcceE
Q 001411 835 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRKIG 914 (1082)
Q Consensus 835 I~~~~Vs~~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR~~i~ 914 (1082)
|+++|++++|+.+ +.++|+|+||+|++||+++|+|+||||||||+++|.|+++|++|+|.+||.++... ...+|++++
T Consensus 1 i~~~~~~~~~~~~-~~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~-~~~~~~~i~ 78 (178)
T cd03247 1 LSINNVSFSYPEQ-EQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDL-EKALSSLIS 78 (178)
T ss_pred CEEEEEEEEeCCC-CccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHH-HHHHHhhEE
Confidence 5789999999732 23699999999999999999999999999999999999999999999999988776 667889999
Q ss_pred EEcccCccccccHHHHhccCCCCCCHHHHHHHHHHhcHHHHHhhCcccccccccCCCCCCChhHHHHHHHHHHHccCCCE
Q 001411 915 LVQQEPALFSTTIYENIKYGNEDASEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSI 994 (1082)
Q Consensus 915 ~VpQdp~Lf~gTIreNl~~~~~~~~d~ei~~al~~a~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlaLARAlL~~~~I 994 (1082)
|+||+|.+|+.|+++|+ ..+||||||||++||||++++|++
T Consensus 79 ~~~q~~~~~~~tv~~~i---------------------------------------~~~LS~G~~qrv~laral~~~p~~ 119 (178)
T cd03247 79 VLNQRPYLFDTTLRNNL---------------------------------------GRRFSGGERQRLALARILLQDAPI 119 (178)
T ss_pred EEccCCeeecccHHHhh---------------------------------------cccCCHHHHHHHHHHHHHhcCCCE
Confidence 99999999999999998 357999999999999999999999
Q ss_pred EEeeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhccCEEEEEeCCEEEEec
Q 001411 995 LLLDEATSALDTASENLIQEALDKLMEGRTTIMVAHRLSTIRNADKIAVLQQGKVAEIG 1053 (1082)
Q Consensus 995 LlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~~DrI~Vl~~G~ive~G 1053 (1082)
|||||||++||+.+.+.+.+.|++..+++|+|++||+++.+..||++++|++|++++.|
T Consensus 120 lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~~~~l~~g~i~~~~ 178 (178)
T cd03247 120 VLLDEPTVGLDPITERQLLSLIFEVLKDKTLIWITHHLTGIEHMDKILFLENGKIIMQG 178 (178)
T ss_pred EEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHhCCEEEEEECCEEEecC
Confidence 99999999999999999999999887789999999999999889999999999999865
|
The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. |
| >PRK14243 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-41 Score=373.04 Aligned_cols=220 Identities=30% Similarity=0.495 Sum_probs=188.3
Q ss_pred cEEEEeEEEECCCCCCcccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccc-----CCccEEEECCccCC--CCCH
Q 001411 834 NIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYD-----PISGTVLIDGYDIR--TLNL 906 (1082)
Q Consensus 834 ~I~~~~Vs~~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~-----p~~G~I~idG~di~--~i~~ 906 (1082)
.|+++||+++|+ +.++|+|+||+|++||++||+|+||||||||+++|.|++. |++|+|.+||.++. ..+.
T Consensus 10 ~l~i~~v~~~~~---~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 86 (264)
T PRK14243 10 VLRTENLNVYYG---SFLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDP 86 (264)
T ss_pred EEEEeeeEEEEC---CEEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccccccCh
Confidence 499999999996 3469999999999999999999999999999999999986 37999999999985 3456
Q ss_pred HHHhcceEEEcccCccccccHHHHhccCCCC--C---CHHHHHHHHHHhcHHHHHhhCcccccccccCCCCCCChhHHHH
Q 001411 907 RSLRRKIGLVQQEPALFSTTIYENIKYGNED--A---SEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQR 981 (1082)
Q Consensus 907 ~~lR~~i~~VpQdp~Lf~gTIreNl~~~~~~--~---~d~ei~~al~~a~l~~~i~~lp~gldt~v~e~G~~LSgGQrQr 981 (1082)
..+|++++|+||++.+|+.|+++|+.++... . .++++.++++.+++.+.+.. .....+.+||||||||
T Consensus 87 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~-------~~~~~~~~LSgGq~qr 159 (264)
T PRK14243 87 VEVRRRIGMVFQKPNPFPKSIYDNIAYGARINGYKGDMDELVERSLRQAALWDEVKD-------KLKQSGLSLSGGQQQR 159 (264)
T ss_pred HHHhhhEEEEccCCccccccHHHHHHhhhhhcCcchHHHHHHHHHHHHhCchhhHHH-------HhcCCcccCCHHHHHH
Confidence 6788999999999999989999999875321 1 12345556677776554432 2344567899999999
Q ss_pred HHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhc-cCEEEEEe---------CCEEEE
Q 001411 982 VAIARAILKNPSILLLDEATSALDTASENLIQEALDKLMEGRTTIMVAHRLSTIRN-ADKIAVLQ---------QGKVAE 1051 (1082)
Q Consensus 982 laLARAlL~~~~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~-~DrI~Vl~---------~G~ive 1051 (1082)
++|||||+++|+||||||||++||+.+.+.+.+.|++..+++|||++||+++.+.. ||||++|+ +|+|++
T Consensus 160 v~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tvi~vtH~~~~~~~~~d~v~~l~~~~~~~~~~~g~i~~ 239 (264)
T PRK14243 160 LCIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKEQYTIIIVTHNMQQAARVSDMTAFFNVELTEGGGRYGYLVE 239 (264)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEecccccccccCceEEE
Confidence 99999999999999999999999999999999999988777899999999999865 99999998 899999
Q ss_pred ecChHHHhhhcc
Q 001411 1052 IGSHEQLLRKEN 1063 (1082)
Q Consensus 1052 ~G~~~eLl~~~~ 1063 (1082)
.|+++++.+.+.
T Consensus 240 ~~~~~~~~~~~~ 251 (264)
T PRK14243 240 FDRTEKIFNSPQ 251 (264)
T ss_pred eCCHHHHHhCCC
Confidence 999999986443
|
|
| >PRK14238 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-41 Score=374.92 Aligned_cols=220 Identities=29% Similarity=0.506 Sum_probs=185.7
Q ss_pred cEEEEeEEEECCCCCCcccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccc-----CCccEEEECCccCCC--CCH
Q 001411 834 NIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYD-----PISGTVLIDGYDIRT--LNL 906 (1082)
Q Consensus 834 ~I~~~~Vs~~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~-----p~~G~I~idG~di~~--i~~ 906 (1082)
.++++||+++|+ +.++|+|+||+|++||++||+|+||||||||+++|.|+++ |++|+|.+||.++.. .+.
T Consensus 24 ~l~~~~l~~~~~---~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 100 (271)
T PRK14238 24 VFDTQNLNLWYG---EDHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYSV 100 (271)
T ss_pred EEEEeeeEEEEC---CcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEcccccccH
Confidence 599999999996 3469999999999999999999999999999999999997 699999999999853 455
Q ss_pred HHHhcceEEEcccCccccccHHHHhccCCC--CCCH-----HHHHHHHHHhcHHHHHhhCcccccccccCCCCCCChhHH
Q 001411 907 RSLRRKIGLVQQEPALFSTTIYENIKYGNE--DASE-----IELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQK 979 (1082)
Q Consensus 907 ~~lR~~i~~VpQdp~Lf~gTIreNl~~~~~--~~~d-----~ei~~al~~a~l~~~i~~lp~gldt~v~e~G~~LSgGQr 979 (1082)
..+|++++|+||+|.+|..|+++|+.++.. ..++ +.+.++++..++.+ ++.......+.+||||||
T Consensus 101 ~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-------~l~~~~~~~~~~LSgGe~ 173 (271)
T PRK14238 101 EELRTNVGMVFQKPNPFPKSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWD-------ELKDRLHDNAYGLSGGQQ 173 (271)
T ss_pred HHHhhhEEEEecCCccccccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcc-------hHHHHHhcCcccCCHHHH
Confidence 678899999999999999999999986421 1221 12233344443322 222334456678999999
Q ss_pred HHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhc-cCEEEEEeCCEEEEecChHHH
Q 001411 980 QRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLMEGRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGSHEQL 1058 (1082)
Q Consensus 980 QrlaLARAlL~~~~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~G~~~eL 1058 (1082)
||++|||||+++|+||||||||++||+.+.+.+.+.|++..+++|+|+|||+++.+.. ||+|++|++|++++.|+++++
T Consensus 174 qrv~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~~g~~~~~ 253 (271)
T PRK14238 174 QRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKKDYSIIIVTHNMQQAARISDKTAFFLNGYVNEYDDTDKI 253 (271)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHcCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999988778999999999999865 999999999999999999999
Q ss_pred hhhcc
Q 001411 1059 LRKEN 1063 (1082)
Q Consensus 1059 l~~~~ 1063 (1082)
...+.
T Consensus 254 ~~~~~ 258 (271)
T PRK14238 254 FSNPS 258 (271)
T ss_pred HcCCC
Confidence 86443
|
|
| >PRK14261 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-41 Score=372.26 Aligned_cols=227 Identities=30% Similarity=0.511 Sum_probs=190.6
Q ss_pred cEEEEeEEEECCCCCCcccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccC-----CccEEEECCccCCCC--CH
Q 001411 834 NIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDP-----ISGTVLIDGYDIRTL--NL 906 (1082)
Q Consensus 834 ~I~~~~Vs~~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p-----~~G~I~idG~di~~i--~~ 906 (1082)
.|+++||+++|+ +.++|+|+||+|++||++||+|+||||||||+++|.|+.+| ++|+|.+||.++... +.
T Consensus 6 ~i~~~~l~~~~~---~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 82 (253)
T PRK14261 6 ILSTKNLNLWYG---EKHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADV 82 (253)
T ss_pred eEEEeeeEEEEC---CeeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccccccch
Confidence 489999999996 34699999999999999999999999999999999999763 489999999999876 45
Q ss_pred HHHhcceEEEcccCccccccHHHHhccCCC--CC-C----HHHHHHHHHHhcHHHHHhhCcccccccccCCCCCCChhHH
Q 001411 907 RSLRRKIGLVQQEPALFSTTIYENIKYGNE--DA-S----EIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQK 979 (1082)
Q Consensus 907 ~~lR~~i~~VpQdp~Lf~gTIreNl~~~~~--~~-~----d~ei~~al~~a~l~~~i~~lp~gldt~v~e~G~~LSgGQr 979 (1082)
...|+.++|+||+|.+|+.|+++|+.++.. .. . ++.+.++++.+++.+.+ .+.....+.+||||||
T Consensus 83 ~~~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l-------~~~~~~~~~~LS~G~~ 155 (253)
T PRK14261 83 VALRRKIGMVFQRPNPFPKSIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWDEV-------KDRLHDSALSLSGGQQ 155 (253)
T ss_pred hhhhceEEEEecCCccCcccHHHHHHhhHHhcCCCCHHHHHHHHHHHHHHhcCchhh-------HHHhhcChhhCCHHHH
Confidence 677889999999999999999999987521 11 1 22344555555543322 2334556678999999
Q ss_pred HHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhc-cCEEEEEeCCEEEEecChHHH
Q 001411 980 QRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLMEGRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGSHEQL 1058 (1082)
Q Consensus 980 QrlaLARAlL~~~~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~G~~~eL 1058 (1082)
||++||||++.+|+++||||||++||+.+.+.+.+.|++..+++|+|++||+++.+.. ||+|++|++|++++.|+++++
T Consensus 156 qrv~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~tvii~sh~~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 235 (253)
T PRK14261 156 QRLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKKEYTVIIVTHNMQQAARVSDYTGFMYLGKLIEFDKTTQI 235 (253)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhhCceEEEEEcCHHHHHhhCCEEEEEECCEEEEcCCHHHH
Confidence 9999999999999999999999999999999999999988767899999999999965 999999999999999999999
Q ss_pred hhhccchHHHHH
Q 001411 1059 LRKENGIYKQLI 1070 (1082)
Q Consensus 1059 l~~~~g~f~~l~ 1070 (1082)
.+++...+.+.+
T Consensus 236 ~~~~~~~~~~~~ 247 (253)
T PRK14261 236 FENPHEELTENY 247 (253)
T ss_pred HhCCCcHHHHHH
Confidence 865444455444
|
|
| >PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-41 Score=370.14 Aligned_cols=218 Identities=34% Similarity=0.556 Sum_probs=181.7
Q ss_pred EEEEeEEEECCCCCCcccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCccCCCCC--------H
Q 001411 835 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLN--------L 906 (1082)
Q Consensus 835 I~~~~Vs~~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~--------~ 906 (1082)
++++||+++|+ +.++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+ .
T Consensus 4 l~~~~l~~~~~---~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 80 (250)
T PRK11264 4 IEVKNLVKKFH---GQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQKGLI 80 (250)
T ss_pred EEEeceEEEEC---CeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccccccchhhHH
Confidence 89999999996 346999999999999999999999999999999999999999999999999987542 3
Q ss_pred HHHhcceEEEcccCcccc-ccHHHHhccCC---CCCCHHHHHHHHHHhcHHHHHhhCcccccccccCCCCCCChhHHHHH
Q 001411 907 RSLRRKIGLVQQEPALFS-TTIYENIKYGN---EDASEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRV 982 (1082)
Q Consensus 907 ~~lR~~i~~VpQdp~Lf~-gTIreNl~~~~---~~~~d~ei~~al~~a~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrl 982 (1082)
..+|++++||||++.+|+ .|+++|+.++. .....++..+. +.+.++.+ |++........+||||||||+
T Consensus 81 ~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~-----~~~~l~~~--gl~~~~~~~~~~LS~Gq~qrv 153 (250)
T PRK11264 81 RQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATAR-----ARELLAKV--GLAGKETSYPRRLSGGQQQRV 153 (250)
T ss_pred HHhhhhEEEEecCcccCCCCCHHHHHHHHHHHhcCCCHHHHHHH-----HHHHHHHc--CCcchhhCChhhCChHHHHHH
Confidence 567889999999999886 69999997631 11122221111 12233332 343334445678999999999
Q ss_pred HHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEecCchhhhc-cCEEEEEeCCEEEEecChHHHhh
Q 001411 983 AIARAILKNPSILLLDEATSALDTASENLIQEALDKLM-EGRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGSHEQLLR 1060 (1082)
Q Consensus 983 aLARAlL~~~~ILlLDEaTS~LD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~G~~~eLl~ 1060 (1082)
+|||||+.+|++|||||||++||+.+.+.+.+.|++.. +++|+|+|||+++.+.. ||+|++|++|++++.|+++++.+
T Consensus 154 ~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 233 (250)
T PRK11264 154 AIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMSFARDVADRAIFMDQGRIVEQGPAKALFA 233 (250)
T ss_pred HHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHHhc
Confidence 99999999999999999999999999999999999875 47899999999999965 99999999999999999999876
Q ss_pred hc
Q 001411 1061 KE 1062 (1082)
Q Consensus 1061 ~~ 1062 (1082)
.+
T Consensus 234 ~~ 235 (250)
T PRK11264 234 DP 235 (250)
T ss_pred CC
Confidence 43
|
|
| >PRK14254 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-41 Score=375.88 Aligned_cols=220 Identities=30% Similarity=0.556 Sum_probs=186.9
Q ss_pred ccEEEEeEEEECCCCCCcccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccc-----CCccEEEECCccCCC--CC
Q 001411 833 GNIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYD-----PISGTVLIDGYDIRT--LN 905 (1082)
Q Consensus 833 g~I~~~~Vs~~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~-----p~~G~I~idG~di~~--i~ 905 (1082)
..|+++||+++|+ +.++|+|+||+|++||++||+|+||||||||+++|.|+++ |++|+|.++|.++.. .+
T Consensus 38 ~~l~i~~l~~~~~---~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~~~ 114 (285)
T PRK14254 38 TVIEARDLNVFYG---DEQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVD 114 (285)
T ss_pred ceEEEEEEEEEEC---CEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccc
Confidence 3599999999996 3469999999999999999999999999999999999997 689999999999864 34
Q ss_pred HHHHhcceEEEcccCccccccHHHHhccCCC-----CCCHHHHHHHHHHhcHHHHHhhCcccccccccCCCCCCChhHHH
Q 001411 906 LRSLRRKIGLVQQEPALFSTTIYENIKYGNE-----DASEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQ 980 (1082)
Q Consensus 906 ~~~lR~~i~~VpQdp~Lf~gTIreNl~~~~~-----~~~d~ei~~al~~a~l~~~i~~lp~gldt~v~e~G~~LSgGQrQ 980 (1082)
...+|++++||||++.+|+.|+++|+.++.. ...+++++++++..++...+.. .......+|||||||
T Consensus 115 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~-------~~~~~~~~LSgGe~q 187 (285)
T PRK14254 115 PVALRRRIGMVFQKPNPFPKSIYDNVAYGLKIQGYDGDIDERVEESLRRAALWDEVKD-------QLDSSGLDLSGGQQQ 187 (285)
T ss_pred hHhhhccEEEEecCCccCcCCHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCchhHH-------HHhCCcccCCHHHHH
Confidence 5678899999999999999999999986421 1123456666766665433221 233455689999999
Q ss_pred HHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhc-cCEEE-EEeCCEEEEecChHHH
Q 001411 981 RVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLMEGRTTIMVAHRLSTIRN-ADKIA-VLQQGKVAEIGSHEQL 1058 (1082)
Q Consensus 981 rlaLARAlL~~~~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~-~DrI~-Vl~~G~ive~G~~~eL 1058 (1082)
|++|||||+++|+||||||||++||+.+.+.+.+.|++..+++|+|++||+++.+.. |||++ +|++|+|++.|+++++
T Consensus 188 rv~LAraL~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~~~~tiii~tH~~~~i~~~~dri~v~l~~G~i~~~g~~~~~ 267 (285)
T PRK14254 188 RLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAEEYTVVIVTHNMQQAARISDKTAVFLTGGELVEFDDTDKI 267 (285)
T ss_pred HHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEeeCCEEEEeCCHHHH
Confidence 999999999999999999999999999999999999998767899999999999876 99975 5799999999999998
Q ss_pred hhhc
Q 001411 1059 LRKE 1062 (1082)
Q Consensus 1059 l~~~ 1062 (1082)
.+++
T Consensus 268 ~~~~ 271 (285)
T PRK14254 268 FENP 271 (285)
T ss_pred HhCc
Confidence 7643
|
|
| >PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-42 Score=379.31 Aligned_cols=216 Identities=28% Similarity=0.505 Sum_probs=181.6
Q ss_pred EEEEEEEEECCCCC---CccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHHhCCCCCCcEEEECCeeCCC----CCHHH
Q 001411 206 IEFSEVCFAYPSRP---HMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKS----LQLKW 278 (1082)
Q Consensus 206 i~~~~v~~~y~~~~---~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~----~~~~~ 278 (1082)
|+++|++|+|+... ..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|.++.. .+...
T Consensus 2 i~~~~v~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 81 (288)
T PRK13643 2 IKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKP 81 (288)
T ss_pred EEEEEEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccccccHHH
Confidence 78999999997432 249999999999999999999999999999999999999999999999999863 33566
Q ss_pred HhhhceEEccCC--CcChhcHHHHHhcCCCCC--CHHH----HHHHHHHhchHHHHhcCCCCccccccCCCCCCChHHHH
Q 001411 279 LREQMGLVSQEP--ALFATSIANNILLGKEDA--SMDR----VIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQ 350 (1082)
Q Consensus 279 ~~~~i~~v~Q~~--~l~~~ti~~ni~~g~~~~--~~~~----~~~~~~~~~~~~~i~~lp~g~~t~~g~~g~~LSgGqkq 350 (1082)
+|+.++||+|+| .+|+.|+.||+.|+.... +.++ +.++++..++. +........+|||||||
T Consensus 82 ~~~~ig~v~q~~~~~l~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~----------~~~~~~~~~~LSgGqkq 151 (288)
T PRK13643 82 VRKKVGVVFQFPESQLFEETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLA----------DEFWEKSPFELSGGQMR 151 (288)
T ss_pred HHhhEEEEecCcchhcccchHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCC----------hhhccCCcccCCHHHHH
Confidence 788999999998 788899999999874321 2222 22333333321 12334556789999999
Q ss_pred HHHHHHhcccCCCeeEEeCcccCCCHHHHHHHHHHHHHHc-CCCeEEEEccCccccc-cCCEEEEEeCCEEEEecCchhh
Q 001411 351 RIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIM-SNRTTIVVAHRLSTVR-DVDTIMVLKNGQVVESGTHVDL 428 (1082)
Q Consensus 351 ri~lARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~vtH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l 428 (1082)
|++|||||+.+|+++||||||++||+.+...+.+.|.++. +++|+|++||+++.+. .||+|++|++|++++.|+++++
T Consensus 152 rvaiA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~vtHd~~~~~~~~dri~~l~~G~i~~~g~~~~~ 231 (288)
T PRK13643 152 RVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMDDVADYADYVYLLEKGHIISCGTPSDV 231 (288)
T ss_pred HHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 9999999999999999999999999999999999998875 4789999999999885 5999999999999999999988
Q ss_pred hhc
Q 001411 429 ISK 431 (1082)
Q Consensus 429 ~~~ 431 (1082)
...
T Consensus 232 ~~~ 234 (288)
T PRK13643 232 FQE 234 (288)
T ss_pred HcC
Confidence 653
|
|
| >PRK10851 sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-42 Score=388.08 Aligned_cols=212 Identities=31% Similarity=0.497 Sum_probs=181.4
Q ss_pred cEEEEEEEEECCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHHhCCCCCCcEEEECCeeCCCCCHHHHhhhce
Q 001411 205 QIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMG 284 (1082)
Q Consensus 205 ~i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 284 (1082)
.|+++|++++|++ ..+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++...++ .++.|+
T Consensus 2 ~L~i~~l~~~~~~--~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~--~~r~i~ 77 (353)
T PRK10851 2 SIEIANIKKSFGR--TQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHA--RDRKVG 77 (353)
T ss_pred EEEEEEEEEEeCC--eEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCH--HHCCEE
Confidence 3789999999975 349999999999999999999999999999999999999999999999999976554 356799
Q ss_pred EEccCCCcChh-cHHHHHhcCCCC------CC----HHHHHHHHHHhchHHHHhcCCCCccccccCCCCCCChHHHHHHH
Q 001411 285 LVSQEPALFAT-SIANNILLGKED------AS----MDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIA 353 (1082)
Q Consensus 285 ~v~Q~~~l~~~-ti~~ni~~g~~~------~~----~~~~~~~~~~~~~~~~i~~lp~g~~t~~g~~g~~LSgGqkqri~ 353 (1082)
||+|++.+|+. |++||+.++... .+ .+++.++++..++.+ .......+||||||||++
T Consensus 78 ~v~Q~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~-----------~~~~~~~~LSgGq~QRva 146 (353)
T PRK10851 78 FVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAH-----------LADRYPAQLSGGQKQRVA 146 (353)
T ss_pred EEecCcccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCch-----------hhhCChhhCCHHHHHHHH
Confidence 99999999986 999999987431 11 123344444444433 334445689999999999
Q ss_pred HHHhcccCCCeeEEeCcccCCCHHHHHHHHHHHHHHcC--CCeEEEEccCcccccc-CCEEEEEeCCEEEEecCchhhhh
Q 001411 354 IARAVLRNPKILLLDEATSALDAESELIVQRALEKIMS--NRTTIVVAHRLSTVRD-VDTIMVLKNGQVVESGTHVDLIS 430 (1082)
Q Consensus 354 lARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~ 430 (1082)
|||||+.+|++||||||||+||+.++..+.+.|+++.+ +.|+|+|||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 147 lArAL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~ea~~~~Dri~vl~~G~i~~~g~~~~i~~ 226 (353)
T PRK10851 147 LARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQEEAMEVADRVVVMSQGNIEQAGTPDQVWR 226 (353)
T ss_pred HHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 99999999999999999999999999999999998754 6899999999998754 89999999999999999999876
Q ss_pred c
Q 001411 431 K 431 (1082)
Q Consensus 431 ~ 431 (1082)
+
T Consensus 227 ~ 227 (353)
T PRK10851 227 E 227 (353)
T ss_pred C
Confidence 4
|
|
| >PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-41 Score=378.25 Aligned_cols=217 Identities=34% Similarity=0.555 Sum_probs=182.5
Q ss_pred EEEEEEEEECCCCC---CccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHHhCCCCCCcEEEECCeeCCCCC--HHHHh
Q 001411 206 IEFSEVCFAYPSRP---HMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQ--LKWLR 280 (1082)
Q Consensus 206 i~~~~v~~~y~~~~---~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~--~~~~~ 280 (1082)
|+++|++|+|++.. .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+ ...++
T Consensus 3 l~~~~l~~~y~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 82 (287)
T PRK13637 3 IKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDIR 82 (287)
T ss_pred EEEEEEEEECCCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCccHHHHh
Confidence 78999999997422 35999999999999999999999999999999999999999999999999997643 45678
Q ss_pred hhceEEccCC--CcChhcHHHHHhcCCCC--CCHH----HHHHHHHHhchHHHHhcCCCCccccccCCCCCCChHHHHHH
Q 001411 281 EQMGLVSQEP--ALFATSIANNILLGKED--ASMD----RVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRI 352 (1082)
Q Consensus 281 ~~i~~v~Q~~--~l~~~ti~~ni~~g~~~--~~~~----~~~~~~~~~~~~~~i~~lp~g~~t~~g~~g~~LSgGqkqri 352 (1082)
++||||+|+| .+|+.|++|||.++... .+.+ ++.++++.+++. +.+........||||||||+
T Consensus 83 ~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~---------~~~~~~~~~~~LSgGq~qrv 153 (287)
T PRK13637 83 KKVGLVFQYPEYQLFEETIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLD---------YEDYKDKSPFELSGGQKRRV 153 (287)
T ss_pred hceEEEecCchhccccccHHHHHHhHHHHCCCCHHHHHHHHHHHHHHcCCC---------chhhccCCcccCCHHHHHHH
Confidence 8999999998 57888999999986321 2222 233333333221 11345566789999999999
Q ss_pred HHHHhcccCCCeeEEeCcccCCCHHHHHHHHHHHHHHcC--CCeEEEEccCccccc-cCCEEEEEeCCEEEEecCchhhh
Q 001411 353 AIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMS--NRTTIVVAHRLSTVR-DVDTIMVLKNGQVVESGTHVDLI 429 (1082)
Q Consensus 353 ~lARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~vtH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~ 429 (1082)
+|||||+.+|++|||||||++||+.+...+.+.|+++.+ ++|+|+|||+++.+. .||+|++|++|++++.|+++++.
T Consensus 154 ~iAraL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~drv~~l~~G~i~~~g~~~~~~ 233 (287)
T PRK13637 154 AIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSMEDVAKLADRIIVMNKGKCELQGTPREVF 233 (287)
T ss_pred HHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 999999999999999999999999999999999998753 789999999999875 59999999999999999998876
Q ss_pred hc
Q 001411 430 SK 431 (1082)
Q Consensus 430 ~~ 431 (1082)
+.
T Consensus 234 ~~ 235 (287)
T PRK13637 234 KE 235 (287)
T ss_pred hC
Confidence 53
|
|
| >PRK14266 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-41 Score=370.87 Aligned_cols=224 Identities=32% Similarity=0.531 Sum_probs=191.2
Q ss_pred cEEEEeEEEECCCCCCcccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccc-----CCccEEEECCccCCC--CCH
Q 001411 834 NIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYD-----PISGTVLIDGYDIRT--LNL 906 (1082)
Q Consensus 834 ~I~~~~Vs~~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~-----p~~G~I~idG~di~~--i~~ 906 (1082)
.++++||+++|+ +.++|+|+||+|++||++||+|+||||||||+++|+|+.+ |++|+|.+||.+++. .+.
T Consensus 3 ~l~~~~v~~~~~---~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~ 79 (250)
T PRK14266 3 RIEVENLNTYFD---DAHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVDV 79 (250)
T ss_pred EEEEEeEEEEeC---CeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcccccccH
Confidence 378999999996 3469999999999999999999999999999999999975 389999999999875 346
Q ss_pred HHHhcceEEEcccCccccccHHHHhccCCC--CC-C----HHHHHHHHHHhcHHHHHhhCcccccccccCCCCCCChhHH
Q 001411 907 RSLRRKIGLVQQEPALFSTTIYENIKYGNE--DA-S----EIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQK 979 (1082)
Q Consensus 907 ~~lR~~i~~VpQdp~Lf~gTIreNl~~~~~--~~-~----d~ei~~al~~a~l~~~i~~lp~gldt~v~e~G~~LSgGQr 979 (1082)
..+|++++|+||+|.+|+.|+++|+.++.. .. + ++.+.++++.+++.+++..+ ....+.+||+|||
T Consensus 80 ~~~~~~i~~~~q~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~-------~~~~~~~LS~Gq~ 152 (250)
T PRK14266 80 VELRKKVGMVFQKPNPFPKSIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVKDK-------LDKSALGLSGGQQ 152 (250)
T ss_pred HHHhhheEEEecCCccCcchHHHHHHhHHhhcCCCCHHHHHHHHHHHHHHcCCchhHHHH-------HhCCcccCCHHHH
Confidence 678999999999999999999999986421 11 1 23455667777776554421 2345568999999
Q ss_pred HHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhc-cCEEEEEeCCEEEEecChHHH
Q 001411 980 QRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLMEGRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGSHEQL 1058 (1082)
Q Consensus 980 QrlaLARAlL~~~~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~G~~~eL 1058 (1082)
||+|||||++++|+||||||||++||+.+.+.+.+.|++..+++|+|++||+++.+.. ||+|++|++|++++.|+++++
T Consensus 153 qrv~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~~~~i~~l~~G~i~~~g~~~~~ 232 (250)
T PRK14266 153 QRLCIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKLKEDYTIVIVTHNMQQATRVSKYTSFFLNGEIIESGLTDQI 232 (250)
T ss_pred HHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEECCHHHHHhhcCEEEEEECCeEEEeCCHHHH
Confidence 9999999999999999999999999999999999999988778999999999999876 999999999999999999999
Q ss_pred hhhccchHH
Q 001411 1059 LRKENGIYK 1067 (1082)
Q Consensus 1059 l~~~~g~f~ 1067 (1082)
...+.+.+.
T Consensus 233 ~~~~~~~~~ 241 (250)
T PRK14266 233 FINPKDKRT 241 (250)
T ss_pred HhCCCChHH
Confidence 765555443
|
|
| >TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-42 Score=388.74 Aligned_cols=214 Identities=29% Similarity=0.473 Sum_probs=183.4
Q ss_pred CCcEEEEEEEEECCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHHhCCCCCC--cEEEECCeeCCCCCHHHHh
Q 001411 203 AGQIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTS--GKILLDGHDLKSLQLKWLR 280 (1082)
Q Consensus 203 ~~~i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~--G~i~~~g~~~~~~~~~~~~ 280 (1082)
.+.++++|++++|++ ..+|+|+||++++||+++|+||||||||||+++|+|+++|++ |+|.++|+++...++ .+
T Consensus 3 ~~~l~~~~l~~~~~~--~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~~~--~~ 78 (362)
T TIGR03258 3 CGGIRIDHLRVAYGA--NTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPP--HK 78 (362)
T ss_pred ceEEEEEEEEEEECC--eEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCCCH--HH
Confidence 357999999999975 349999999999999999999999999999999999999999 999999999976655 35
Q ss_pred hhceEEccCCCcChh-cHHHHHhcCCCC--CCH----HHHHHHHHHhchHHHHhcCCCCccccccCCCCCCChHHHHHHH
Q 001411 281 EQMGLVSQEPALFAT-SIANNILLGKED--ASM----DRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIA 353 (1082)
Q Consensus 281 ~~i~~v~Q~~~l~~~-ti~~ni~~g~~~--~~~----~~~~~~~~~~~~~~~i~~lp~g~~t~~g~~g~~LSgGqkqri~ 353 (1082)
+.|+||+|++.+|+. ||+|||.|+... .+. +++.++++..++.+ .......+|||||||||+
T Consensus 79 r~ig~vfQ~~~l~p~~tv~enl~~~l~~~~~~~~~~~~~v~~~l~~~gL~~-----------~~~~~~~~LSgGq~QRva 147 (362)
T TIGR03258 79 RGLALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAERVADALKLVGLGD-----------AAAHLPAQLSGGMQQRIA 147 (362)
T ss_pred CCEEEEECCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCc-----------hhhCChhhCCHHHHHHHH
Confidence 679999999999977 999999986431 121 23444444444433 344445689999999999
Q ss_pred HHHhcccCCCeeEEeCcccCCCHHHHHHHHHHHHHHcC---CCeEEEEccCccccc-cCCEEEEEeCCEEEEecCchhhh
Q 001411 354 IARAVLRNPKILLLDEATSALDAESELIVQRALEKIMS---NRTTIVVAHRLSTVR-DVDTIMVLKNGQVVESGTHVDLI 429 (1082)
Q Consensus 354 lARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~---~~t~i~vtH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~ 429 (1082)
|||||+.+|++||||||||+||+.+...+.+.|+++.+ +.|+|+|||+++.+. .||+|++|++|++++.|+++++.
T Consensus 148 LARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~ea~~l~dri~vl~~G~i~~~g~~~~~~ 227 (362)
T TIGR03258 148 IARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQDDALTLADKAGIMKDGRLAAHGEPQALY 227 (362)
T ss_pred HHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 99999999999999999999999999999999988754 689999999999875 59999999999999999999997
Q ss_pred hc
Q 001411 430 SK 431 (1082)
Q Consensus 430 ~~ 431 (1082)
.+
T Consensus 228 ~~ 229 (362)
T TIGR03258 228 DA 229 (362)
T ss_pred hC
Confidence 65
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. |
| >TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-42 Score=366.06 Aligned_cols=205 Identities=30% Similarity=0.496 Sum_probs=172.5
Q ss_pred EEEEeEEEECCCCC-CcccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCccCCCCCHHH---Hh
Q 001411 835 IELRNVSFKYPVRP-DITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRS---LR 910 (1082)
Q Consensus 835 I~~~~Vs~~Y~~~~-~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~---lR 910 (1082)
|+++||+++|+... ..++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++..++... +|
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (221)
T TIGR02211 2 LKCENLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAKLR 81 (221)
T ss_pred EEEEeeeEEccCCCcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCHhHHHHHH
Confidence 78999999996321 246999999999999999999999999999999999999999999999999998877654 34
Q ss_pred -cceEEEcccCcccc-ccHHHHhccCCC--CCC----HHHHHHHHHHhcHHHHHhhCcccccccccCCCCCCChhHHHHH
Q 001411 911 -RKIGLVQQEPALFS-TTIYENIKYGNE--DAS----EIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRV 982 (1082)
Q Consensus 911 -~~i~~VpQdp~Lf~-gTIreNl~~~~~--~~~----d~ei~~al~~a~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrl 982 (1082)
++++|+||+|.+|+ .|++||+.++.. ..+ .+++.++++..++. .........||||||||+
T Consensus 82 ~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~LS~G~~qrv 150 (221)
T TIGR02211 82 NKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEAKERAYEMLEKVGLE-----------HRINHRPSELSGGERQRV 150 (221)
T ss_pred HhcEEEEecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCh-----------hhhhCChhhCCHHHHHHH
Confidence 68999999999986 599999976311 111 12334444444443 333344567999999999
Q ss_pred HHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHhc--CCceEEEEecCchhhhccCEEEEEeCCEEE
Q 001411 983 AIARAILKNPSILLLDEATSALDTASENLIQEALDKLM--EGRTTIMVAHRLSTIRNADKIAVLQQGKVA 1050 (1082)
Q Consensus 983 aLARAlL~~~~ILlLDEaTS~LD~~te~~I~~~l~~~~--~~~TvI~IaHrl~ti~~~DrI~Vl~~G~iv 1050 (1082)
+||||++++|+||||||||++||+.+.+.+.+.|++.. .++|+|+|||+++.+..+|+|++|++|+++
T Consensus 151 ~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~d~v~~l~~G~i~ 220 (221)
T TIGR02211 151 AIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLELAKKLDRVLEMKDGQLF 220 (221)
T ss_pred HHHHHHhCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhhcCEEEEEeCCEec
Confidence 99999999999999999999999999999999999874 378999999999999889999999999986
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina. |
| >PRK11124 artP arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-41 Score=369.97 Aligned_cols=212 Identities=30% Similarity=0.472 Sum_probs=179.4
Q ss_pred EEEEeEEEECCCCCCcccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCccCC------CCCHHH
Q 001411 835 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIR------TLNLRS 908 (1082)
Q Consensus 835 I~~~~Vs~~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~------~i~~~~ 908 (1082)
|+++||+++|+ +.++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++. ..+...
T Consensus 3 l~~~~l~~~~~---~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (242)
T PRK11124 3 IQLNGINCFYG---AHQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRE 79 (242)
T ss_pred EEEEeeEEEEC---CeeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccccccchhhHHH
Confidence 78999999996 346999999999999999999999999999999999999999999999999873 123456
Q ss_pred HhcceEEEcccCccccc-cHHHHhccCC---CCCCH----HHHHHHHHHhcHHHHHhhCcccccccccCCCCCCChhHHH
Q 001411 909 LRRKIGLVQQEPALFST-TIYENIKYGN---EDASE----IELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQ 980 (1082)
Q Consensus 909 lR~~i~~VpQdp~Lf~g-TIreNl~~~~---~~~~d----~ei~~al~~a~l~~~i~~lp~gldt~v~e~G~~LSgGQrQ 980 (1082)
+|++++|+||+|.+|++ |+++|+..+. ..... +++.+.++..++ +........+|||||||
T Consensus 80 ~~~~i~~~~q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~l~~~gl-----------~~~~~~~~~~LS~G~~q 148 (242)
T PRK11124 80 LRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQALARAEKLLERLRL-----------KPYADRFPLHLSGGQQQ 148 (242)
T ss_pred HHhheEEEecCccccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-----------hhhhhCChhhCCHHHHH
Confidence 78899999999999975 9999997421 11122 223333444444 33334445689999999
Q ss_pred HHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEecCchhhhc-cCEEEEEeCCEEEEecChHHH
Q 001411 981 RVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLM-EGRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGSHEQL 1058 (1082)
Q Consensus 981 rlaLARAlL~~~~ILlLDEaTS~LD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~G~~~eL 1058 (1082)
|++||||++++|+||||||||++||+++.+.+.+.|++.. +++|+|++||+++.+.. ||++++|++|++++.|+++++
T Consensus 149 rv~laral~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~g~i~~~~~~~~~ 228 (242)
T PRK11124 149 RVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDASCF 228 (242)
T ss_pred HHHHHHHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHh
Confidence 9999999999999999999999999999999999999875 47999999999999965 999999999999999999988
Q ss_pred hh
Q 001411 1059 LR 1060 (1082)
Q Consensus 1059 l~ 1060 (1082)
.+
T Consensus 229 ~~ 230 (242)
T PRK11124 229 TQ 230 (242)
T ss_pred cC
Confidence 65
|
|
| >PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-42 Score=387.25 Aligned_cols=215 Identities=37% Similarity=0.589 Sum_probs=182.6
Q ss_pred EEEEEEEEECCC--CCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHHhCCCCCCcEEEECCeeCCCCCHHH---Hh
Q 001411 206 IEFSEVCFAYPS--RPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKW---LR 280 (1082)
Q Consensus 206 i~~~~v~~~y~~--~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~---~~ 280 (1082)
|+++|++|+|++ ...++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++..++... +|
T Consensus 2 i~i~~l~~~y~~~~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~ 81 (343)
T PRK11153 2 IELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRKAR 81 (343)
T ss_pred EEEEeEEEEeCCCCCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHh
Confidence 789999999972 2245999999999999999999999999999999999999999999999999998776543 47
Q ss_pred hhceEEccCCCcCh-hcHHHHHhcCCCC--CCHH----HHHHHHHHhchHHHHhcCCCCccccccCCCCCCChHHHHHHH
Q 001411 281 EQMGLVSQEPALFA-TSIANNILLGKED--ASMD----RVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIA 353 (1082)
Q Consensus 281 ~~i~~v~Q~~~l~~-~ti~~ni~~g~~~--~~~~----~~~~~~~~~~~~~~i~~lp~g~~t~~g~~g~~LSgGqkqri~ 353 (1082)
++|+|++|++.+|+ .|++||+.++... .+.+ ++.+.++.. |++........+||||||||++
T Consensus 82 ~~ig~v~q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~-----------gL~~~~~~~~~~LSgGq~qRv~ 150 (343)
T PRK11153 82 RQIGMIFQHFNLLSSRTVFDNVALPLELAGTPKAEIKARVTELLELV-----------GLSDKADRYPAQLSGGQKQRVA 150 (343)
T ss_pred cCEEEEeCCCccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHc-----------CCchhhhCChhhCCHHHHHHHH
Confidence 78999999999887 5999999876321 1222 223333333 3443444556789999999999
Q ss_pred HHHhcccCCCeeEEeCcccCCCHHHHHHHHHHHHHHcC--CCeEEEEccCcccccc-CCEEEEEeCCEEEEecCchhhhh
Q 001411 354 IARAVLRNPKILLLDEATSALDAESELIVQRALEKIMS--NRTTIVVAHRLSTVRD-VDTIMVLKNGQVVESGTHVDLIS 430 (1082)
Q Consensus 354 lARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~ 430 (1082)
|||||+.+|++|||||||++||+.+.+.+.+.|+++.+ ++|+|++||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 151 lAraL~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~~i~~~~d~v~~l~~G~i~~~g~~~~~~~ 230 (343)
T PRK11153 151 IARALASNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMDVVKRICDRVAVIDAGRLVEQGTVSEVFS 230 (343)
T ss_pred HHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 99999999999999999999999999999999998753 7899999999999865 99999999999999999999876
Q ss_pred c
Q 001411 431 K 431 (1082)
Q Consensus 431 ~ 431 (1082)
.
T Consensus 231 ~ 231 (343)
T PRK11153 231 H 231 (343)
T ss_pred C
Confidence 5
|
|
| >cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-42 Score=365.95 Aligned_cols=211 Identities=24% Similarity=0.422 Sum_probs=177.0
Q ss_pred EEEEEEEEECCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHHhCCCCCCcEEEECCeeCCCCCHHHHhhhceE
Q 001411 206 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGL 285 (1082)
Q Consensus 206 i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 285 (1082)
|+++|+++.|++...++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++... ...+++.++|
T Consensus 1 l~~~~l~~~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~-~~~~~~~i~~ 79 (220)
T cd03263 1 LQIRNLTKTYKKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTD-RKAARQSLGY 79 (220)
T ss_pred CEEEeeEEEeCCCCceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccc-hHHHhhhEEE
Confidence 478999999975224599999999999999999999999999999999999999999999999998654 3566778999
Q ss_pred EccCCCcCh-hcHHHHHhcCCCC--CCH----HHHHHHHHHhchHHHHhcCCCCccccccCCCCCCChHHHHHHHHHHhc
Q 001411 286 VSQEPALFA-TSIANNILLGKED--ASM----DRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAV 358 (1082)
Q Consensus 286 v~Q~~~l~~-~ti~~ni~~g~~~--~~~----~~~~~~~~~~~~~~~i~~lp~g~~t~~g~~g~~LSgGqkqri~lARal 358 (1082)
++|++.+++ .|++||+.++... ... +++.++++..++. ........+||||||||++||||+
T Consensus 80 v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~LS~G~~qrv~la~al 148 (220)
T cd03263 80 CPQFDALFDELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLT-----------DKANKRARTLSGGMKRKLSLAIAL 148 (220)
T ss_pred ecCcCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCH-----------HHHhChhhhCCHHHHHHHHHHHHH
Confidence 999999884 6999999874211 111 2233333333332 223344568999999999999999
Q ss_pred ccCCCeeEEeCcccCCCHHHHHHHHHHHHHHcCCCeEEEEccCcccccc-CCEEEEEeCCEEEEecCchhh
Q 001411 359 LRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRD-VDTIMVLKNGQVVESGTHVDL 428 (1082)
Q Consensus 359 ~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l 428 (1082)
+.+|+++||||||++||+.+.+.+.+.|.++.+++|+|++||+++.+.. ||++++|++|++++.|+++++
T Consensus 149 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~ 219 (220)
T cd03263 149 IGGPSVLLLDEPTSGLDPASRRAIWDLILEVRKGRSIILTTHSMDEAEALCDRIAIMSDGKLRCIGSPQEL 219 (220)
T ss_pred hcCCCEEEECCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhcCEEEEEECCEEEecCCHHHc
Confidence 9999999999999999999999999999998777999999999999865 899999999999999988764
|
Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. |
| >PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-41 Score=369.86 Aligned_cols=204 Identities=31% Similarity=0.486 Sum_probs=178.0
Q ss_pred cEEEEeEEEECCCCCCcccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCccCCCCCHHHHhcce
Q 001411 834 NIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRKI 913 (1082)
Q Consensus 834 ~I~~~~Vs~~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR~~i 913 (1082)
.|+++||+++|+ +.++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++. .+|+++
T Consensus 12 ~l~i~~l~~~~~---~~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~-----~~~~~i 83 (257)
T PRK11247 12 PLLLNAVSKRYG---ERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLA-----EAREDT 83 (257)
T ss_pred cEEEEEEEEEEC---CcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEHH-----HhhCce
Confidence 499999999996 346999999999999999999999999999999999999999999999998753 567899
Q ss_pred EEEcccCcccc-ccHHHHhccCCCCCCHHHHHHHHHHhcHHHHHhhCcccccccccCCCCCCChhHHHHHHHHHHHccCC
Q 001411 914 GLVQQEPALFS-TTIYENIKYGNEDASEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNP 992 (1082)
Q Consensus 914 ~~VpQdp~Lf~-gTIreNl~~~~~~~~d~ei~~al~~a~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlaLARAlL~~~ 992 (1082)
+|+||++.+|+ .|+++|+.++.....++++.++++..++.+.. .....+||||||||++|||||+++|
T Consensus 84 ~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~l~~~gl~~~~-----------~~~~~~LSgGqkqrl~laraL~~~p 152 (257)
T PRK11247 84 RLMFQDARLLPWKKVIDNVGLGLKGQWRDAALQALAAVGLADRA-----------NEWPAALSGGQKQRVALARALIHRP 152 (257)
T ss_pred EEEecCccCCCCCcHHHHHHhcccchHHHHHHHHHHHcCChhHh-----------cCChhhCCHHHHHHHHHHHHHhcCC
Confidence 99999999987 69999998753222345566677777665443 3344689999999999999999999
Q ss_pred CEEEeeCCCCCCCHHHHHHHHHHHHHhc--CCceEEEEecCchhhhc-cCEEEEEeCCEEEEecChH
Q 001411 993 SILLLDEATSALDTASENLIQEALDKLM--EGRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGSHE 1056 (1082)
Q Consensus 993 ~ILlLDEaTS~LD~~te~~I~~~l~~~~--~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~G~~~ 1056 (1082)
++|||||||++||+.+.+.+.+.|++.. .++|+|+|||+++.+.. ||+|++|++|++++.|+.+
T Consensus 153 ~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~~~~ 219 (257)
T PRK11247 153 GLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDVSEAVAMADRVLLIEEGKIGLDLTVD 219 (257)
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecccc
Confidence 9999999999999999999999999864 37899999999999865 9999999999999988754
|
|
| >cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-42 Score=367.13 Aligned_cols=205 Identities=35% Similarity=0.521 Sum_probs=174.1
Q ss_pred EEEEeEEEECCCCC-CcccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCccCCCCCHHHHhcce
Q 001411 835 IELRNVSFKYPVRP-DITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRKI 913 (1082)
Q Consensus 835 I~~~~Vs~~Y~~~~-~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR~~i 913 (1082)
|+++|++++|+... ..++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.. +++++
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~-----~~~~i 75 (220)
T cd03293 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTG-----PGPDR 75 (220)
T ss_pred CeEEEEEEEcCCCCcceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcc-----ccCcE
Confidence 47899999996311 1479999999999999999999999999999999999999999999999998863 46789
Q ss_pred EEEcccCcccc-ccHHHHhccCCC--CC----CHHHHHHHHHHhcHHHHHhhCcccccccccCCCCCCChhHHHHHHHHH
Q 001411 914 GLVQQEPALFS-TTIYENIKYGNE--DA----SEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIAR 986 (1082)
Q Consensus 914 ~~VpQdp~Lf~-gTIreNl~~~~~--~~----~d~ei~~al~~a~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlaLAR 986 (1082)
+||||+|.+|+ .|+++|+.++.. .. .++++.++++..++.++..+ ...+||||||||++|||
T Consensus 76 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LSgG~~qrl~la~ 144 (220)
T cd03293 76 GYVFQQDALLPWLTVLDNVALGLELQGVPKAEARERAEELLELVGLSGFENA-----------YPHQLSGGMRQRVALAR 144 (220)
T ss_pred EEEecccccccCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhC-----------CcccCCHHHHHHHHHHH
Confidence 99999999987 699999976421 11 12345566666666544433 33579999999999999
Q ss_pred HHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHhc--CCceEEEEecCchhhhc-cCEEEEEe--CCEEEEecCh
Q 001411 987 AILKNPSILLLDEATSALDTASENLIQEALDKLM--EGRTTIMVAHRLSTIRN-ADKIAVLQ--QGKVAEIGSH 1055 (1082)
Q Consensus 987 AlL~~~~ILlLDEaTS~LD~~te~~I~~~l~~~~--~~~TvI~IaHrl~ti~~-~DrI~Vl~--~G~ive~G~~ 1055 (1082)
||+++|++|||||||++||+.+.+.+.+.|++.. .++|+|+|||+++.+.. ||+|++|+ +|++++.++.
T Consensus 145 al~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~G~i~~~~~~ 218 (220)
T cd03293 145 ALAVDPDVLLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHDIDEAVFLADRVVVLSARPGRIVAEVEV 218 (220)
T ss_pred HHHcCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCCCEEEEEEEe
Confidence 9999999999999999999999999999999874 37899999999998865 99999999 7999998764
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-41 Score=373.92 Aligned_cols=216 Identities=31% Similarity=0.481 Sum_probs=185.8
Q ss_pred cEEEEeEEEECCCCCCcccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCccCCCCCHHHHhcce
Q 001411 834 NIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRKI 913 (1082)
Q Consensus 834 ~I~~~~Vs~~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR~~i 913 (1082)
.|+++|++++|+.. ..++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++...+...+|+++
T Consensus 7 ~l~i~~l~~~~~~~-~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i 85 (269)
T PRK13648 7 IIVFKNVSFQYQSD-ASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLRKHI 85 (269)
T ss_pred eEEEEEEEEEcCCC-CCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhhe
Confidence 49999999999732 24699999999999999999999999999999999999999999999999999888888899999
Q ss_pred EEEcccCc--cccccHHHHhccCCCC--CC----HHHHHHHHHHhcHHHHHhhCcccccccccCCCCCCChhHHHHHHHH
Q 001411 914 GLVQQEPA--LFSTTIYENIKYGNED--AS----EIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIA 985 (1082)
Q Consensus 914 ~~VpQdp~--Lf~gTIreNl~~~~~~--~~----d~ei~~al~~a~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlaLA 985 (1082)
+|+||+|. ++..|+++|+.++... .. ++++.++++..++.++. .....+||||||||++||
T Consensus 86 ~~v~q~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~qrl~la 154 (269)
T PRK13648 86 GIVFQNPDNQFVGSIVKYDVAFGLENHAVPYDEMHRRVSEALKQVDMLERA-----------DYEPNALSGGQKQRVAIA 154 (269)
T ss_pred eEEEeChHHhcccccHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCchhh-----------hCCcccCCHHHHHHHHHH
Confidence 99999994 4456899999764221 12 22344555555554332 234467999999999999
Q ss_pred HHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHhcC--CceEEEEecCchhhhccCEEEEEeCCEEEEecChHHHhhh
Q 001411 986 RAILKNPSILLLDEATSALDTASENLIQEALDKLME--GRTTIMVAHRLSTIRNADKIAVLQQGKVAEIGSHEQLLRK 1061 (1082)
Q Consensus 986 RAlL~~~~ILlLDEaTS~LD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~~~DrI~Vl~~G~ive~G~~~eLl~~ 1061 (1082)
||++++|++|||||||++||+.+.+.+.+.|++..+ ++|+|+|||+++.+..||||++|++|++++.|+++++...
T Consensus 155 ral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 232 (269)
T PRK13648 155 GVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLSEAMEADHVIVMNKGTVYKEGTPTEIFDH 232 (269)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCchHHhcCCEEEEEECCEEEEecCHHHHhcC
Confidence 999999999999999999999999999999998753 7899999999999988999999999999999999998763
|
|
| >cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-42 Score=368.27 Aligned_cols=211 Identities=38% Similarity=0.617 Sum_probs=183.8
Q ss_pred EEEEeEEEECCCCCCcccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCccCCCCCHHHHhcceE
Q 001411 835 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRKIG 914 (1082)
Q Consensus 835 I~~~~Vs~~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR~~i~ 914 (1082)
|+++|++++|+ +.++++|+||+|+|||++||+|+||||||||+++|.|+++|++|+|.+||.++...+. .++.++
T Consensus 1 l~~~~l~~~~~---~~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~--~~~~i~ 75 (232)
T cd03300 1 IELENVSKFYG---GFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPP--HKRPVN 75 (232)
T ss_pred CEEEeEEEEeC---CeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCh--hhcceE
Confidence 47999999996 3469999999999999999999999999999999999999999999999999987654 367899
Q ss_pred EEcccCccccc-cHHHHhccCCC------CCCHHHHHHHHHHhcHHHHHhhCcccccccccCCCCCCChhHHHHHHHHHH
Q 001411 915 LVQQEPALFST-TIYENIKYGNE------DASEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARA 987 (1082)
Q Consensus 915 ~VpQdp~Lf~g-TIreNl~~~~~------~~~d~ei~~al~~a~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlaLARA 987 (1082)
|+||++.+|.+ |+++|+.++.. ...++++.++++..++.++..+.| .+||+|||||++||||
T Consensus 76 ~~~q~~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~lS~G~~qrl~lara 144 (232)
T cd03300 76 TVFQNYALFPHLTVFENIAFGLRLKKLPKAEIKERVAEALDLVQLEGYANRKP-----------SQLSGGQQQRVAIARA 144 (232)
T ss_pred EEecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCCh-----------hhCCHHHHHHHHHHHH
Confidence 99999999975 99999986421 112345566666666665554433 5799999999999999
Q ss_pred HccCCCEEEeeCCCCCCCHHHHHHHHHHHHHhcC--CceEEEEecCchhhhc-cCEEEEEeCCEEEEecChHHHhhh
Q 001411 988 ILKNPSILLLDEATSALDTASENLIQEALDKLME--GRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGSHEQLLRK 1061 (1082)
Q Consensus 988 lL~~~~ILlLDEaTS~LD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~G~~~eLl~~ 1061 (1082)
++++|++|||||||++||+.+.+.+.+.|++..+ ++|+|++||+++.+.. ||+|++|++|++++.|+++++.+.
T Consensus 145 l~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~i~~l~~G~~~~~~~~~~~~~~ 221 (232)
T cd03300 145 LVNEPKVLLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQEEALTMSDRIAVMNKGKIQQIGTPEEIYEE 221 (232)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEecCCHHHHHhC
Confidence 9999999999999999999999999999998753 7999999999999865 999999999999999999998764
|
PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-42 Score=357.47 Aligned_cols=217 Identities=33% Similarity=0.599 Sum_probs=188.1
Q ss_pred cEEEEeEEEECCCCCCcccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCc---cCCCCCHHHHh
Q 001411 834 NIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGY---DIRTLNLRSLR 910 (1082)
Q Consensus 834 ~I~~~~Vs~~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~---di~~i~~~~lR 910 (1082)
.|+++|++..|+ ..++++|||++|+.||.+|+.||||||||||++++.|+..|++|.|.+||. |.++++.+ .
T Consensus 2 ~i~i~~~~~~~~---~~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~~~~~--~ 76 (345)
T COG1118 2 SIRINNVKKRFG---AFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLAVR--D 76 (345)
T ss_pred ceeehhhhhhcc---cccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhccchh--h
Confidence 378899999996 457899999999999999999999999999999999999999999999999 77764433 4
Q ss_pred cceEEEcccCcccc-ccHHHHhccCCC----CCC----HHHHHHHHHHhcHHHHHhhCcccccccccCCCCCCChhHHHH
Q 001411 911 RKIGLVQQEPALFS-TTIYENIKYGNE----DAS----EIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQR 981 (1082)
Q Consensus 911 ~~i~~VpQdp~Lf~-gTIreNl~~~~~----~~~----d~ei~~al~~a~l~~~i~~lp~gldt~v~e~G~~LSgGQrQr 981 (1082)
++||+|+|+..||. .||++||.||.. ..+ ...+.+-|+.+++.++-++-| .+||||||||
T Consensus 77 R~VGfvFQ~YALF~HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la~ryP-----------~QLSGGQrQR 145 (345)
T COG1118 77 RKVGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLADRYP-----------AQLSGGQRQR 145 (345)
T ss_pred cceeEEEechhhcccchHHhhhhhcccccccCCChhhHHHHHHHHHHHhcccchhhcCc-----------hhcChHHHHH
Confidence 67999999999986 699999999852 122 334455566676665555444 6899999999
Q ss_pred HHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHhcC--CceEEEEecCchhhhc-cCEEEEEeCCEEEEecChHHH
Q 001411 982 VAIARAILKNPSILLLDEATSALDTASENLIQEALDKLME--GRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGSHEQL 1058 (1082)
Q Consensus 982 laLARAlL~~~~ILlLDEaTS~LD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~G~~~eL 1058 (1082)
+||||||...|++|+||||.++||..-.+.+++-|++... ++|+++|||+.+.+.. ||||+||++|+|...|+|+|.
T Consensus 146 VALARALA~eP~vLLLDEPf~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~eea~~ladrvvvl~~G~Ieqvg~p~ev 225 (345)
T COG1118 146 VALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQEEALELADRVVVLNQGRIEQVGPPDEV 225 (345)
T ss_pred HHHHHHhhcCCCeEeecCCchhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCHHHHHhhcceEEEecCCeeeeeCCHHHH
Confidence 9999999999999999999999999999999999998753 7899999999999855 999999999999999999999
Q ss_pred hhhccchH
Q 001411 1059 LRKENGIY 1066 (1082)
Q Consensus 1059 l~~~~g~f 1066 (1082)
...+++.|
T Consensus 226 ~~~P~s~f 233 (345)
T COG1118 226 YDHPASRF 233 (345)
T ss_pred hcCCCccc
Confidence 88777655
|
|
| >PRK14270 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-41 Score=370.36 Aligned_cols=219 Identities=31% Similarity=0.515 Sum_probs=186.5
Q ss_pred cEEEEeEEEECCCCCCcccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccC-----CccEEEECCccCCCC--CH
Q 001411 834 NIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDP-----ISGTVLIDGYDIRTL--NL 906 (1082)
Q Consensus 834 ~I~~~~Vs~~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p-----~~G~I~idG~di~~i--~~ 906 (1082)
.|+++|++++|+ +.++|+|+||+|++||.+||+|+||||||||+++|.|+++| ++|+|.+||.++... +.
T Consensus 4 ~l~~~~l~~~~~---~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~ 80 (251)
T PRK14270 4 KMESKNLNLWYG---EKQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDV 80 (251)
T ss_pred EEEEEEeEEEEC---CeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccccH
Confidence 589999999996 34699999999999999999999999999999999999985 799999999998653 34
Q ss_pred HHHhcceEEEcccCccccccHHHHhccCCCC--C-C----HHHHHHHHHHhcHHHHHhhCcccccccccCCCCCCChhHH
Q 001411 907 RSLRRKIGLVQQEPALFSTTIYENIKYGNED--A-S----EIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQK 979 (1082)
Q Consensus 907 ~~lR~~i~~VpQdp~Lf~gTIreNl~~~~~~--~-~----d~ei~~al~~a~l~~~i~~lp~gldt~v~e~G~~LSgGQr 979 (1082)
..+|++++|+||++.+|+.|+++|+.++... . + .+++.++++.+++.+.+. .........||+|||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~G~~ 153 (251)
T PRK14270 81 VELRKRVGMVFQKPNPFPMSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEVK-------DDLKKSALKLSGGQQ 153 (251)
T ss_pred HHHHhheEEEecCCCcCCCcHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCchhhh-------hHhhCCcccCCHHHH
Confidence 5678999999999999999999999864211 1 1 123455666666543322 123345568999999
Q ss_pred HHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhc-cCEEEEEeCCEEEEecChHHH
Q 001411 980 QRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLMEGRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGSHEQL 1058 (1082)
Q Consensus 980 QrlaLARAlL~~~~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~G~~~eL 1058 (1082)
||++||||++++|+||||||||++||+.+.+.+.+.|++..++.|+|+|||+++.+.. ||||++|++|++++.|+++++
T Consensus 154 qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 233 (251)
T PRK14270 154 QRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKKEYTIVIVTHNMQQASRVSDYTAFFLMGDLIEFNKTEKI 233 (251)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEEcCHHHHHHhcCEEEEEECCeEEEeCCHHHH
Confidence 9999999999999999999999999999999999999988767899999999999865 999999999999999999999
Q ss_pred hhhc
Q 001411 1059 LRKE 1062 (1082)
Q Consensus 1059 l~~~ 1062 (1082)
...+
T Consensus 234 ~~~~ 237 (251)
T PRK14270 234 FLEP 237 (251)
T ss_pred hcCC
Confidence 7643
|
|
| >cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-41 Score=370.66 Aligned_cols=212 Identities=37% Similarity=0.619 Sum_probs=179.8
Q ss_pred EEEEEEEEECCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHHhCCCCCCcEEEECCeeCCCCC---HHHHhhh
Q 001411 206 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQ---LKWLREQ 282 (1082)
Q Consensus 206 i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~---~~~~~~~ 282 (1082)
++++|++++|++. ..+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+ ...+++.
T Consensus 1 l~~~~l~~~~~~~-~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 79 (241)
T cd03256 1 IEVENLSKTYPNG-KKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLRRQ 79 (241)
T ss_pred CEEeeEEEecCCc-cEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccCHhHHHHHHhc
Confidence 4689999999751 34999999999999999999999999999999999999999999999999988766 4567788
Q ss_pred ceEEccCCCcCh-hcHHHHHhcCCCCC-----------C---HHHHHHHHHHhchHHHHhcCCCCccccccCCCCCCChH
Q 001411 283 MGLVSQEPALFA-TSIANNILLGKEDA-----------S---MDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGG 347 (1082)
Q Consensus 283 i~~v~Q~~~l~~-~ti~~ni~~g~~~~-----------~---~~~~~~~~~~~~~~~~i~~lp~g~~t~~g~~g~~LSgG 347 (1082)
++|++|++.+|+ .|++||+.++.... . .+++.++ ++.+ |+.......+.+||||
T Consensus 80 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------l~~~--~l~~~~~~~~~~LS~G 148 (241)
T cd03256 80 IGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAA---------LERV--GLLDKAYQRADQLSGG 148 (241)
T ss_pred cEEEcccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHH---------HHHc--CChhhhCCCcccCCHH
Confidence 999999998887 59999998753210 1 1122222 3332 3444455667799999
Q ss_pred HHHHHHHHHhcccCCCeeEEeCcccCCCHHHHHHHHHHHHHHc--CCCeEEEEccCccccc-cCCEEEEEeCCEEEEecC
Q 001411 348 QKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIM--SNRTTIVVAHRLSTVR-DVDTIMVLKNGQVVESGT 424 (1082)
Q Consensus 348 qkqri~lARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~--~~~t~i~vtH~~~~~~-~~d~i~~l~~G~i~~~g~ 424 (1082)
||||++|||||+.+|+++||||||++||+.+...+.+.|+++. .++|+|++||+++.+. .||++++|++|++++.|+
T Consensus 149 ~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~G~i~~~~~ 228 (241)
T cd03256 149 QQQRVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVDLAREYADRIVGLKDGRIVFDGP 228 (241)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecC
Confidence 9999999999999999999999999999999999999999874 3789999999999987 589999999999999999
Q ss_pred chhhh
Q 001411 425 HVDLI 429 (1082)
Q Consensus 425 ~~~l~ 429 (1082)
++++.
T Consensus 229 ~~~~~ 233 (241)
T cd03256 229 PAELT 233 (241)
T ss_pred HHHhh
Confidence 88763
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14271 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-41 Score=372.05 Aligned_cols=220 Identities=29% Similarity=0.490 Sum_probs=186.9
Q ss_pred cEEEEeEEEECCCCCCcccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccC-----CccEEEECCccCCCCC-HH
Q 001411 834 NIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDP-----ISGTVLIDGYDIRTLN-LR 907 (1082)
Q Consensus 834 ~I~~~~Vs~~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p-----~~G~I~idG~di~~i~-~~ 907 (1082)
.++++||+++|+ +.++|+|+||+|++||++||+|+||||||||+++|.|+++| ++|+|.+||.++.+.+ ..
T Consensus 21 ~l~i~nl~~~~~---~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~ 97 (276)
T PRK14271 21 AMAAVNLTLGFA---GKTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDVL 97 (276)
T ss_pred EEEEeeEEEEEC---CEEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccchhH
Confidence 589999999996 35799999999999999999999999999999999999986 6999999999988763 45
Q ss_pred HHhcceEEEcccCccccccHHHHhccCCC---CCCHHHHH----HHHHHhcHHHHHhhCcccccccccCCCCCCChhHHH
Q 001411 908 SLRRKIGLVQQEPALFSTTIYENIKYGNE---DASEIELM----KATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQ 980 (1082)
Q Consensus 908 ~lR~~i~~VpQdp~Lf~gTIreNl~~~~~---~~~d~ei~----~al~~a~l~~~i~~lp~gldt~v~e~G~~LSgGQrQ 980 (1082)
.+|++++|+||+|.+|+.|+++|+.++.. ..++++.. +.++..++.+ .+++.......+|||||||
T Consensus 98 ~~~~~i~~v~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~~~l~~~~~~LSgGq~q 170 (276)
T PRK14271 98 EFRRRVGMLFQRPNPFPMSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWD-------AVKDRLSDSPFRLSGGQQQ 170 (276)
T ss_pred HHhhheEEeccCCccCCccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCCc-------hhhhHhhCCcccCCHHHHH
Confidence 67899999999999999999999986421 12444432 2333333322 1223345566789999999
Q ss_pred HHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhc-cCEEEEEeCCEEEEecChHHHh
Q 001411 981 RVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLMEGRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGSHEQLL 1059 (1082)
Q Consensus 981 rlaLARAlL~~~~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~G~~~eLl 1059 (1082)
|++|||||+++|++|||||||++||+.+.+.+.+.|++..+++|+|+|||+++.+.. ||||++|++|++++.|+++++.
T Consensus 171 rl~LAral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~ 250 (276)
T PRK14271 171 LLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLADRLTVIIVTHNLAQAARISDRAALFFDGRLVEEGPTEQLF 250 (276)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999999999999999999987667899999999999865 9999999999999999999998
Q ss_pred hhcc
Q 001411 1060 RKEN 1063 (1082)
Q Consensus 1060 ~~~~ 1063 (1082)
+.+.
T Consensus 251 ~~~~ 254 (276)
T PRK14271 251 SSPK 254 (276)
T ss_pred hCcC
Confidence 7543
|
|
| >PRK14250 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-41 Score=367.48 Aligned_cols=215 Identities=34% Similarity=0.560 Sum_probs=184.1
Q ss_pred cEEEEEEEEECCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHHhCCCCCCcEEEECCeeCCCCCHHHHhhhce
Q 001411 205 QIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMG 284 (1082)
Q Consensus 205 ~i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 284 (1082)
.++++|++|+|++. ++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.++
T Consensus 3 ~l~~~~l~~~~~~~--~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i~ 80 (241)
T PRK14250 3 EIEFKEVSYSSFGK--EILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLRRKIG 80 (241)
T ss_pred eEEEEeEEEEeCCe--eeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcChHHhhhcEE
Confidence 48999999999753 4999999999999999999999999999999999999999999999999998777777888999
Q ss_pred EEccCCCcChhcHHHHHhcCCCCCC--HHHHHHHHHHhchHHHHhcCCCCccccccCCCCCCChHHHHHHHHHHhcccCC
Q 001411 285 LVSQEPALFATSIANNILLGKEDAS--MDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNP 362 (1082)
Q Consensus 285 ~v~Q~~~l~~~ti~~ni~~g~~~~~--~~~~~~~~~~~~~~~~i~~lp~g~~t~~g~~g~~LSgGqkqri~lARal~~~~ 362 (1082)
|++|++.+|+.|++||+.++..... .+++.+.++..++.+ .........||||||||++||||++.+|
T Consensus 81 ~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~~LS~G~~qrl~la~al~~~p 150 (241)
T PRK14250 81 MVFQQPHLFEGTVKDNIEYGPMLKGEKNVDVEYYLSIVGLNK----------EYATRDVKNLSGGEAQRVSIARTLANNP 150 (241)
T ss_pred EEecCchhchhhHHHHHhcchhhcCcHHHHHHHHHHHcCCCH----------HHhhCCcccCCHHHHHHHHHHHHHhcCC
Confidence 9999999999999999987643211 223333333333210 1234456789999999999999999999
Q ss_pred CeeEEeCcccCCCHHHHHHHHHHHHHHc--CCCeEEEEccCcccccc-CCEEEEEeCCEEEEecCchhhhhc
Q 001411 363 KILLLDEATSALDAESELIVQRALEKIM--SNRTTIVVAHRLSTVRD-VDTIMVLKNGQVVESGTHVDLISK 431 (1082)
Q Consensus 363 ~illlDEpts~LD~~~~~~i~~~l~~~~--~~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 431 (1082)
+++||||||++||+.+.+.+.+.|+++. .++|+|++||+++.+.. ||+|++|++|++++.|+++++...
T Consensus 151 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 222 (241)
T PRK14250 151 EVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHNMEQAKRIGDYTAFLNKGILVEYAKTYDFFTN 222 (241)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHHhCCEEEEEeCCEEEEeCCHHHHhcC
Confidence 9999999999999999999999999874 37899999999998764 899999999999999999988754
|
|
| >TIGR02673 FtsE cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-42 Score=364.80 Aligned_cols=201 Identities=37% Similarity=0.569 Sum_probs=174.5
Q ss_pred EEEEeEEEECCCCCCcccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCccCCCCCHH---HHhc
Q 001411 835 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLR---SLRR 911 (1082)
Q Consensus 835 I~~~~Vs~~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~---~lR~ 911 (1082)
|+++|++++|+. +.++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++..++.. .+|+
T Consensus 2 l~~~~l~~~~~~--~~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (214)
T TIGR02673 2 IEFHNVSKAYPG--GVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLLRR 79 (214)
T ss_pred EEEEeeeEEeCC--CceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHh
Confidence 789999999952 34699999999999999999999999999999999999999999999999999887643 4788
Q ss_pred ceEEEcccCcccc-ccHHHHhccCCC------CCCHHHHHHHHHHhcHHHHHhhCcccccccccCCCCCCChhHHHHHHH
Q 001411 912 KIGLVQQEPALFS-TTIYENIKYGNE------DASEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAI 984 (1082)
Q Consensus 912 ~i~~VpQdp~Lf~-gTIreNl~~~~~------~~~d~ei~~al~~a~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlaL 984 (1082)
+++|+||+|.+|. .|+++|+.++.. ...+++++++++..++.+...+.| .+||||||||++|
T Consensus 80 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrl~l 148 (214)
T TIGR02673 80 RIGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRRVGAALRQVGLEHKADAFP-----------EQLSGGEQQRVAI 148 (214)
T ss_pred heEEEecChhhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCCh-----------hhCCHHHHHHHHH
Confidence 9999999999986 699999986421 112345667777777765544332 5799999999999
Q ss_pred HHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEecCchhhhc-cCEEEEEeCCE
Q 001411 985 ARAILKNPSILLLDEATSALDTASENLIQEALDKLM-EGRTTIMVAHRLSTIRN-ADKIAVLQQGK 1048 (1082)
Q Consensus 985 ARAlL~~~~ILlLDEaTS~LD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ 1048 (1082)
||||+++|++|||||||++||+.+...+.+.|++.. +++|+|+|||+++.+.. ||+|++|++|+
T Consensus 149 a~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~ 214 (214)
T TIGR02673 149 ARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHDLSLVDRVAHRVIILDDGR 214 (214)
T ss_pred HHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEecCCC
Confidence 999999999999999999999999999999999874 48999999999999976 99999999985
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein. |
| >PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-41 Score=389.44 Aligned_cols=214 Identities=26% Similarity=0.504 Sum_probs=187.3
Q ss_pred cEEEEEEEEECCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHHhCCCCCCcEEEECCeeCCCCCHHHHhhhce
Q 001411 205 QIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMG 284 (1082)
Q Consensus 205 ~i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 284 (1082)
.++++|++++|++ ..+|+|+||++++||+++|+||||||||||+|+|+|+++|++|+|.++|+++..++...++++||
T Consensus 3 ~L~~~nls~~y~~--~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~~~~~~~~~ig 80 (402)
T PRK09536 3 MIDVSDLSVEFGD--TTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRRVA 80 (402)
T ss_pred eEEEeeEEEEECC--EEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcCCHHHHhcceE
Confidence 4889999999975 34999999999999999999999999999999999999999999999999999888888899999
Q ss_pred EEccCCCc-ChhcHHHHHhcCCCCC----------CHHHHHHHHHHhchHHHHhcCCCCccccccCCCCCCChHHHHHHH
Q 001411 285 LVSQEPAL-FATSIANNILLGKEDA----------SMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIA 353 (1082)
Q Consensus 285 ~v~Q~~~l-~~~ti~~ni~~g~~~~----------~~~~~~~~~~~~~~~~~i~~lp~g~~t~~g~~g~~LSgGqkqri~ 353 (1082)
||+|++.+ ++.|++||+.++.... ..+++.++++..++.+.. .....+||||||||++
T Consensus 81 ~v~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~-----------~~~~~~LSgGerQRv~ 149 (402)
T PRK09536 81 SVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFA-----------DRPVTSLSGGERQRVL 149 (402)
T ss_pred EEccCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhh-----------cCChhhCCHHHHHHHH
Confidence 99999987 5679999999875211 123455555555554433 3345689999999999
Q ss_pred HHHhcccCCCeeEEeCcccCCCHHHHHHHHHHHHHHc-CCCeEEEEccCccccc-cCCEEEEEeCCEEEEecCchhhhhc
Q 001411 354 IARAVLRNPKILLLDEATSALDAESELIVQRALEKIM-SNRTTIVVAHRLSTVR-DVDTIMVLKNGQVVESGTHVDLISK 431 (1082)
Q Consensus 354 lARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~vtH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~~ 431 (1082)
|||||+++|++|||||||++||+.++..+++.|+++. +++|+|++||+++.+. .||++++|++|++++.|++++++..
T Consensus 150 IArAL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~~g~TIIivsHdl~~~~~~adrii~l~~G~iv~~G~~~ev~~~ 229 (402)
T PRK09536 150 LARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIHDLDLAARYCDELVLLADGRVRAAGPPADVLTA 229 (402)
T ss_pred HHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEecCHHHHhCc
Confidence 9999999999999999999999999999999999885 4789999999999985 5999999999999999999998764
|
|
| >TIGR02769 nickel_nikE nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-41 Score=372.25 Aligned_cols=226 Identities=29% Similarity=0.471 Sum_probs=185.1
Q ss_pred EEEEeEEEECCCC------CCcccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCccCCCCCHHH
Q 001411 835 IELRNVSFKYPVR------PDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRS 908 (1082)
Q Consensus 835 I~~~~Vs~~Y~~~------~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~ 908 (1082)
|+++||+++|+.. .+.++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++..++...
T Consensus 3 l~~~~l~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~ 82 (265)
T TIGR02769 3 LEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRKQ 82 (265)
T ss_pred EEEEeEEEEeccCccccccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEccccCHHH
Confidence 7899999999631 1357999999999999999999999999999999999999999999999999998876543
Q ss_pred ---HhcceEEEcccCc--cc-cccHHHHhccCCC---CCC----HHHHHHHHHHhcHHHHHhhCcccccccccCCCCCCC
Q 001411 909 ---LRRKIGLVQQEPA--LF-STTIYENIKYGNE---DAS----EIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLS 975 (1082)
Q Consensus 909 ---lR~~i~~VpQdp~--Lf-~gTIreNl~~~~~---~~~----d~ei~~al~~a~l~~~i~~lp~gldt~v~e~G~~LS 975 (1082)
+|++++|+||+|. ++ ..|+++|+.++.. ... ++++.++++..++.+ ......+..||
T Consensus 83 ~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~----------~~~~~~~~~LS 152 (265)
T TIGR02769 83 RRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRS----------EDADKLPRQLS 152 (265)
T ss_pred HHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCh----------hhhhCChhhCC
Confidence 6788999999983 44 4699999964211 111 223344444443321 22344557899
Q ss_pred hhHHHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHhcC--CceEEEEecCchhhhc-cCEEEEEeCCEEEEe
Q 001411 976 GGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLME--GRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEI 1052 (1082)
Q Consensus 976 gGQrQrlaLARAlL~~~~ILlLDEaTS~LD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~ 1052 (1082)
||||||++|||||+.+|+||||||||++||+.+.+.+.+.|++..+ ++|+|+|||+++.+.. ||++++|++|++++.
T Consensus 153 gGe~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~ 232 (265)
T TIGR02769 153 GGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLRLVQSFCQRVAVMDKGQIVEE 232 (265)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHHhcEEEEEeCCEEEEE
Confidence 9999999999999999999999999999999999999999998753 7899999999999975 999999999999999
Q ss_pred cChHHHhhhccchHHHHH
Q 001411 1053 GSHEQLLRKENGIYKQLI 1070 (1082)
Q Consensus 1053 G~~~eLl~~~~g~f~~l~ 1070 (1082)
|++++++..++..++++.
T Consensus 233 g~~~~~~~~~~~~~~~~~ 250 (265)
T TIGR02769 233 CDVAQLLSFKHPAGRNLQ 250 (265)
T ss_pred CCHHHHcCCCCHHHHHHH
Confidence 999999874333444454
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. |
| >cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-41 Score=368.95 Aligned_cols=211 Identities=31% Similarity=0.509 Sum_probs=178.0
Q ss_pred EEEEEEEEECCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHHhCCCCCCcEEEECCeeCCCCCHHHHhhhceE
Q 001411 206 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGL 285 (1082)
Q Consensus 206 i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 285 (1082)
++++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. .++.++|
T Consensus 3 l~~~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~--~~~~i~~ 78 (239)
T cd03296 3 IEVRNVSKRFGD--FVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPV--QERNVGF 78 (239)
T ss_pred EEEEeEEEEECC--EEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCc--cccceEE
Confidence 789999999975 349999999999999999999999999999999999999999999999999875543 2567999
Q ss_pred EccCCCcCh-hcHHHHHhcCCCCC------CH----HHHHHHHHHhchHHHHhcCCCCccccccCCCCCCChHHHHHHHH
Q 001411 286 VSQEPALFA-TSIANNILLGKEDA------SM----DRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAI 354 (1082)
Q Consensus 286 v~Q~~~l~~-~ti~~ni~~g~~~~------~~----~~~~~~~~~~~~~~~i~~lp~g~~t~~g~~g~~LSgGqkqri~l 354 (1082)
++|+|.+|+ .|++||+.++.... .. +++.++++.. |++........+||||||||++|
T Consensus 79 v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~~~LS~G~~qrl~l 147 (239)
T cd03296 79 VFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLV-----------QLDWLADRYPAQLSGGQRQRVAL 147 (239)
T ss_pred EecCCcccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHc-----------CChhhhhcChhhCCHHHHHHHHH
Confidence 999999886 49999998764211 11 1222333333 33334445567899999999999
Q ss_pred HHhcccCCCeeEEeCcccCCCHHHHHHHHHHHHHHcC--CCeEEEEccCccccc-cCCEEEEEeCCEEEEecCchhhhhc
Q 001411 355 ARAVLRNPKILLLDEATSALDAESELIVQRALEKIMS--NRTTIVVAHRLSTVR-DVDTIMVLKNGQVVESGTHVDLISK 431 (1082)
Q Consensus 355 ARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~vtH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~~ 431 (1082)
||||+.+|+++||||||++||+++.+.+.+.|.++.+ ++|+|++||+++.+. .||+|++|++|++++.|+++++...
T Consensus 148 a~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 227 (239)
T cd03296 148 ARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQEEALEVADRVVVMNKGRIEQVGTPDEVYDH 227 (239)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHHHhcC
Confidence 9999999999999999999999999999999998753 689999999999875 4899999999999999999887643
|
Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13548 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-41 Score=369.93 Aligned_cols=212 Identities=30% Similarity=0.465 Sum_probs=185.1
Q ss_pred EEEEeEEEECCCCCCcccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCccCCCCCHHHHhcceE
Q 001411 835 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRKIG 914 (1082)
Q Consensus 835 I~~~~Vs~~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR~~i~ 914 (1082)
|+++|++++|+ +.++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++..++...++++++
T Consensus 3 l~~~~l~~~~~---~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (258)
T PRK13548 3 LEARNLSVRLG---GRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELARRRA 79 (258)
T ss_pred EEEEeEEEEeC---CeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcccCCHHHhhhheE
Confidence 78999999996 346999999999999999999999999999999999999999999999999998888888889999
Q ss_pred EEcccCcc-ccccHHHHhccCCCCC------CHHHHHHHHHHhcHHHHHhhCcccccccccCCCCCCChhHHHHHHHHHH
Q 001411 915 LVQQEPAL-FSTTIYENIKYGNEDA------SEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARA 987 (1082)
Q Consensus 915 ~VpQdp~L-f~gTIreNl~~~~~~~------~d~ei~~al~~a~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlaLARA 987 (1082)
|+||++.+ +..|+++|+.++.... .++.+.++++..++.+... .....||||||||++||||
T Consensus 80 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LSgGe~qrv~la~a 148 (258)
T PRK13548 80 VLPQHSSLSFPFTVEEVVAMGRAPHGLSRAEDDALVAAALAQVDLAHLAG-----------RDYPQLSGGEQQRVQLARV 148 (258)
T ss_pred EEccCCcCCCCCCHHHHHHhhhcccCCCcHHHHHHHHHHHHHcCCHhHhc-----------CCcccCCHHHHHHHHHHHH
Confidence 99999987 6789999998743211 1234556666666654332 2346799999999999999
Q ss_pred Hc------cCCCEEEeeCCCCCCCHHHHHHHHHHHHHhc--CCceEEEEecCchhhh-ccCEEEEEeCCEEEEecChHHH
Q 001411 988 IL------KNPSILLLDEATSALDTASENLIQEALDKLM--EGRTTIMVAHRLSTIR-NADKIAVLQQGKVAEIGSHEQL 1058 (1082)
Q Consensus 988 lL------~~~~ILlLDEaTS~LD~~te~~I~~~l~~~~--~~~TvI~IaHrl~ti~-~~DrI~Vl~~G~ive~G~~~eL 1058 (1082)
|+ ++|++|||||||++||+.+.+.+.+.|++.. +++|||++||+++.+. .||+|++|++|++++.|+++++
T Consensus 149 l~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 228 (258)
T PRK13548 149 LAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLNLAARYADRIVLLHQGRLVADGTPAEV 228 (258)
T ss_pred HhcccccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhcCEEEEEECCEEEeeCCHHHH
Confidence 99 5999999999999999999999999999875 4789999999999986 4999999999999999999998
Q ss_pred hh
Q 001411 1059 LR 1060 (1082)
Q Consensus 1059 l~ 1060 (1082)
.+
T Consensus 229 ~~ 230 (258)
T PRK13548 229 LT 230 (258)
T ss_pred hC
Confidence 75
|
|
| >PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-41 Score=380.94 Aligned_cols=228 Identities=26% Similarity=0.396 Sum_probs=185.9
Q ss_pred EEEEeEEEECCCCCC-cccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccc----CCccEEEECCccCCCCCHHHH
Q 001411 835 IELRNVSFKYPVRPD-ITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYD----PISGTVLIDGYDIRTLNLRSL 909 (1082)
Q Consensus 835 I~~~~Vs~~Y~~~~~-~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~----p~~G~I~idG~di~~i~~~~l 909 (1082)
|+++||+++|+.+.. .++|+||||+|++||.+||||+||||||||+++|+|+++ |++|+|.+||.|+.+++.+.+
T Consensus 4 L~v~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~~ 83 (326)
T PRK11022 4 LNVDKLSVHFGDESAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKER 83 (326)
T ss_pred EEEeCeEEEECCCCccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHHHH
Confidence 899999999974222 369999999999999999999999999999999999998 489999999999999887665
Q ss_pred hc----ceEEEcccCc--ccc-ccHHHH----hccCCC---CCCHHHHHHHHHHhcHHHHHhhCcccccccccCCCCCCC
Q 001411 910 RR----KIGLVQQEPA--LFS-TTIYEN----IKYGNE---DASEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLS 975 (1082)
Q Consensus 910 R~----~i~~VpQdp~--Lf~-gTIreN----l~~~~~---~~~d~ei~~al~~a~l~~~i~~lp~gldt~v~e~G~~LS 975 (1082)
|+ +|+||||+|. +++ -|+.+| +..... ....+.+.++++.+++.+.. ........+||
T Consensus 84 ~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~~--------~~l~~~p~~LS 155 (326)
T PRK11022 84 RNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDPA--------SRLDVYPHQLS 155 (326)
T ss_pred HHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChH--------HHHhCCchhCC
Confidence 43 6999999995 443 355544 433111 11123456667777664321 11234556899
Q ss_pred hhHHHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHhcC--CceEEEEecCchhhh-ccCEEEEEeCCEEEEe
Q 001411 976 GGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLME--GRTTIMVAHRLSTIR-NADKIAVLQQGKVAEI 1052 (1082)
Q Consensus 976 gGQrQrlaLARAlL~~~~ILlLDEaTS~LD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~-~~DrI~Vl~~G~ive~ 1052 (1082)
||||||++|||||+.+|++||+||||++||+.+...|.+.|++..+ +.|+|+|||+++.+. .||||+||++|+|+|.
T Consensus 156 gGq~QRv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl~~~~~~adri~vm~~G~ive~ 235 (326)
T PRK11022 156 GGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLALVAEAAHKIIVMYAGQVVET 235 (326)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEE
Confidence 9999999999999999999999999999999999999999998753 789999999999995 5999999999999999
Q ss_pred cChHHHhhhccchHHHHH
Q 001411 1053 GSHEQLLRKENGIYKQLI 1070 (1082)
Q Consensus 1053 G~~~eLl~~~~g~f~~l~ 1070 (1082)
|+++++++++...|.+.+
T Consensus 236 g~~~~~~~~p~hpyt~~l 253 (326)
T PRK11022 236 GKAHDIFRAPRHPYTQAL 253 (326)
T ss_pred CCHHHHhhCCCChHHHHH
Confidence 999999986666666543
|
|
| >PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-41 Score=373.15 Aligned_cols=213 Identities=29% Similarity=0.451 Sum_probs=187.1
Q ss_pred cEEEEeEEEECCCCCCcccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCccCCCCCHHHHhcce
Q 001411 834 NIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRKI 913 (1082)
Q Consensus 834 ~I~~~~Vs~~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR~~i 913 (1082)
.|+++||+++|+ +.++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+...+++++
T Consensus 7 ~l~i~~l~~~~~---~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 83 (265)
T PRK10253 7 RLRGEQLTLGYG---KYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVARRI 83 (265)
T ss_pred EEEEEEEEEEEC---CEEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEEhhhCCHHHHhhhe
Confidence 599999999996 34699999999999999999999999999999999999999999999999999988888888999
Q ss_pred EEEcccCcccc-ccHHHHhccCC-CC---------CCHHHHHHHHHHhcHHHHHhhCcccccccccCCCCCCChhHHHHH
Q 001411 914 GLVQQEPALFS-TTIYENIKYGN-ED---------ASEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRV 982 (1082)
Q Consensus 914 ~~VpQdp~Lf~-gTIreNl~~~~-~~---------~~d~ei~~al~~a~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrl 982 (1082)
+|+||++.+|. .|+++|+.++. +. ..++.++++++..++.++.. .....||||||||+
T Consensus 84 ~~v~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~Gq~qrv 152 (265)
T PRK10253 84 GLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLAD-----------QSVDTLSGGQRQRA 152 (265)
T ss_pred EEeeccCcCCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhc-----------CCcccCChHHHHHH
Confidence 99999998875 69999998642 11 11234566677666655432 34467999999999
Q ss_pred HHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHhcC--CceEEEEecCchhhhc-cCEEEEEeCCEEEEecChHHHh
Q 001411 983 AIARAILKNPSILLLDEATSALDTASENLIQEALDKLME--GRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGSHEQLL 1059 (1082)
Q Consensus 983 aLARAlL~~~~ILlLDEaTS~LD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~G~~~eLl 1059 (1082)
+||||++++|++|||||||++||+.+.+.+.+.|++..+ ++|+|+++|+++.+.. ||+|++|++|++++.|+++++.
T Consensus 153 ~laral~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 232 (265)
T PRK10253 153 WIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLNQACRYASHLIALREGKIVAQGAPKEIV 232 (265)
T ss_pred HHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 999999999999999999999999999999999998753 7899999999998865 9999999999999999999987
Q ss_pred h
Q 001411 1060 R 1060 (1082)
Q Consensus 1060 ~ 1060 (1082)
.
T Consensus 233 ~ 233 (265)
T PRK10253 233 T 233 (265)
T ss_pred h
Confidence 5
|
|
| >PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-41 Score=374.77 Aligned_cols=212 Identities=30% Similarity=0.466 Sum_probs=181.2
Q ss_pred EEEEeEEEECCCCCCcccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCccCC--CCCHHHHhcc
Q 001411 835 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIR--TLNLRSLRRK 912 (1082)
Q Consensus 835 I~~~~Vs~~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~--~i~~~~lR~~ 912 (1082)
|+++||+++|+ +.++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++. ..+...+|++
T Consensus 2 l~~~~l~~~~~---~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~ 78 (271)
T PRK13638 2 LATSDLWFRYQ---DEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLALRQQ 78 (271)
T ss_pred eEEEEEEEEcC---CcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCccEEEECCEEcccccCCHHHHHhh
Confidence 78999999996 346999999999999999999999999999999999999999999999999985 3445678899
Q ss_pred eEEEcccCc--cccccHHHHhccCCC--CCCH----HHHHHHHHHhcHHHHHhhCcccccccccCCCCCCChhHHHHHHH
Q 001411 913 IGLVQQEPA--LFSTTIYENIKYGNE--DASE----IELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAI 984 (1082)
Q Consensus 913 i~~VpQdp~--Lf~gTIreNl~~~~~--~~~d----~ei~~al~~a~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlaL 984 (1082)
++||||+|. +|..|+.+|+.++.. ..+. +++.++++..++.++. .....+||||||||++|
T Consensus 79 i~~v~q~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LSgG~~qrl~l 147 (271)
T PRK13638 79 VATVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQHFR-----------HQPIQCLSHGQKKRVAI 147 (271)
T ss_pred eEEEeeChhhccccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHhHh-----------cCCchhCCHHHHHHHHH
Confidence 999999985 577899999976311 1222 2344555555554432 22346799999999999
Q ss_pred HHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEecCchhhhc-cCEEEEEeCCEEEEecChHHHhh
Q 001411 985 ARAILKNPSILLLDEATSALDTASENLIQEALDKLM-EGRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGSHEQLLR 1060 (1082)
Q Consensus 985 ARAlL~~~~ILlLDEaTS~LD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~G~~~eLl~ 1060 (1082)
||||+.+|+||||||||++||+.+.+.+.+.|++.. +++|+|+|||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 148 araL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 225 (271)
T PRK13638 148 AGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDIDLIYEISDAVYVLRQGQILTHGAPGEVFA 225 (271)
T ss_pred HHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 999999999999999999999999999999999874 47899999999999965 99999999999999999999875
|
|
| >PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-41 Score=382.67 Aligned_cols=229 Identities=28% Similarity=0.458 Sum_probs=187.5
Q ss_pred cEEEEeEEEECCCCC-CcccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCC---ccEEEECCccCCCCCHHHH
Q 001411 834 NIELRNVSFKYPVRP-DITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPI---SGTVLIDGYDIRTLNLRSL 909 (1082)
Q Consensus 834 ~I~~~~Vs~~Y~~~~-~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~---~G~I~idG~di~~i~~~~l 909 (1082)
.++++|++++|+.+. ..++|+||||+|++||++||+|+||||||||+++|+|+++|. +|+|.+||.|+..++.+++
T Consensus 12 ~L~i~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~~~~ 91 (330)
T PRK09473 12 LLDVKDLRVTFSTPDGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEKEL 91 (330)
T ss_pred eEEEeCeEEEEecCCCCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCHHHH
Confidence 489999999996322 246999999999999999999999999999999999999996 9999999999999887765
Q ss_pred h----cceEEEcccC--cccc-ccHHHHhccC---CCCCCHHH----HHHHHHHhcHHHHHhhCcccccccccCCCCCCC
Q 001411 910 R----RKIGLVQQEP--ALFS-TTIYENIKYG---NEDASEIE----LMKATKAANAHGFISRMPEGYQSHVGDRGVQLS 975 (1082)
Q Consensus 910 R----~~i~~VpQdp--~Lf~-gTIreNl~~~---~~~~~d~e----i~~al~~a~l~~~i~~lp~gldt~v~e~G~~LS 975 (1082)
| ++|+|||||| .+++ -|+.+|+... ....+.++ +.+.++.+++ |++. ..++..+.+||
T Consensus 92 ~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~L~~vgL-------~~~~-~~~~~~p~~LS 163 (330)
T PRK09473 92 NKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLDAVKM-------PEAR-KRMKMYPHEFS 163 (330)
T ss_pred HHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCC-------CChH-HHhcCCcccCC
Confidence 3 4799999999 4554 4777766421 11123222 3333443333 3322 22455677899
Q ss_pred hhHHHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHhcC--CceEEEEecCchhhhc-cCEEEEEeCCEEEEe
Q 001411 976 GGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLME--GRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEI 1052 (1082)
Q Consensus 976 gGQrQrlaLARAlL~~~~ILlLDEaTS~LD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~ 1052 (1082)
||||||++|||||+.+|++||+|||||+||..+...|.+.|++..+ +.|+|+|||+++.+.. ||||+||++|+|+|.
T Consensus 164 gG~~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~~Dri~vm~~G~ive~ 243 (330)
T PRK09473 164 GGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLGVVAGICDKVLVMYAGRTMEY 243 (330)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEE
Confidence 9999999999999999999999999999999999999999998754 7899999999999975 999999999999999
Q ss_pred cChHHHhhhccchHHHHH
Q 001411 1053 GSHEQLLRKENGIYKQLI 1070 (1082)
Q Consensus 1053 G~~~eLl~~~~g~f~~l~ 1070 (1082)
|+++++++++...|.+.+
T Consensus 244 g~~~~i~~~p~~pyt~~l 261 (330)
T PRK09473 244 GNARDVFYQPSHPYSIGL 261 (330)
T ss_pred CCHHHHHhCCCCHHHHHH
Confidence 999999987666676643
|
|
| >PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-41 Score=377.65 Aligned_cols=219 Identities=33% Similarity=0.540 Sum_probs=181.5
Q ss_pred cccEEEEeEEEECCCCC--CcccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCccCCC----C-
Q 001411 832 KGNIELRNVSFKYPVRP--DITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRT----L- 904 (1082)
Q Consensus 832 ~g~I~~~~Vs~~Y~~~~--~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~----i- 904 (1082)
.+.|+++|++++|+.++ ..++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.. .
T Consensus 4 ~~~l~i~nl~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~ 83 (289)
T PRK13645 4 SKDIILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIK 83 (289)
T ss_pred cceEEEEEEEEEeCCCCccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEccccccccc
Confidence 36799999999997432 1359999999999999999999999999999999999999999999999998852 2
Q ss_pred CHHHHhcceEEEcccC--ccccccHHHHhccCCC--CCCHHHHH----HHHHHhcHHHHHhhCcccccccccCCCCCCCh
Q 001411 905 NLRSLRRKIGLVQQEP--ALFSTTIYENIKYGNE--DASEIELM----KATKAANAHGFISRMPEGYQSHVGDRGVQLSG 976 (1082)
Q Consensus 905 ~~~~lR~~i~~VpQdp--~Lf~gTIreNl~~~~~--~~~d~ei~----~al~~a~l~~~i~~lp~gldt~v~e~G~~LSg 976 (1082)
+...+|++++|+||+| .+|..|+++|+.++.. ....++.. +.++..+ +|++ ........|||
T Consensus 84 ~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~ll~~~~-------L~~~---~~~~~~~~LS~ 153 (289)
T PRK13645 84 EVKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNLGENKQEAYKKVPELLKLVQ-------LPED---YVKRSPFELSG 153 (289)
T ss_pred cHHHHhccEEEEEeCcchhhhhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcC-------CChh---HhcCChhhCCH
Confidence 4567889999999998 4778899999986421 12233322 2222222 2211 23345568999
Q ss_pred hHHHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHhcC--CceEEEEecCchhhhc-cCEEEEEeCCEEEEec
Q 001411 977 GQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLME--GRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIG 1053 (1082)
Q Consensus 977 GQrQrlaLARAlL~~~~ILlLDEaTS~LD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~G 1053 (1082)
|||||++|||||+++|++|||||||++||+.+.+.+.+.|++..+ ++|+|+|||+++.+.. ||+|++|++|++++.|
T Consensus 154 Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~g 233 (289)
T PRK13645 154 GQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVISIG 233 (289)
T ss_pred HHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeC
Confidence 999999999999999999999999999999999999999998753 7899999999999854 9999999999999999
Q ss_pred ChHHHhh
Q 001411 1054 SHEQLLR 1060 (1082)
Q Consensus 1054 ~~~eLl~ 1060 (1082)
+++++.+
T Consensus 234 ~~~~~~~ 240 (289)
T PRK13645 234 SPFEIFS 240 (289)
T ss_pred CHHHHhc
Confidence 9998865
|
|
| >TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-41 Score=370.36 Aligned_cols=217 Identities=31% Similarity=0.515 Sum_probs=182.5
Q ss_pred EEEEEEEEECCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHHhCCCCC-----CcEEEECCeeCCCC--CHHH
Q 001411 206 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPT-----SGKILLDGHDLKSL--QLKW 278 (1082)
Q Consensus 206 i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~-----~G~i~~~g~~~~~~--~~~~ 278 (1082)
++++|++++|++. .+++|+||+|++||+++|+|+||||||||+++|+|+++|+ +|+|.++|+++... +...
T Consensus 2 l~~~~l~~~~~~~--~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~~ 79 (247)
T TIGR00972 2 IEIENLNLFYGEK--EALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVVE 79 (247)
T ss_pred EEEEEEEEEECCe--eeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccchHH
Confidence 7899999999753 4999999999999999999999999999999999999998 99999999998753 3556
Q ss_pred HhhhceEEccCCCcChhcHHHHHhcCCCC---CCH----HHHHHHHHHhchHHHHhcCCCCccccccCCCCCCChHHHHH
Q 001411 279 LREQMGLVSQEPALFATSIANNILLGKED---ASM----DRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQR 351 (1082)
Q Consensus 279 ~~~~i~~v~Q~~~l~~~ti~~ni~~g~~~---~~~----~~~~~~~~~~~~~~~i~~lp~g~~t~~g~~g~~LSgGqkqr 351 (1082)
+++.++|++|++.+|+.|++||+.++... ... +++.++++..++.+++ .........+||||||||
T Consensus 80 ~~~~i~~v~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LSgG~~qr 152 (247)
T TIGR00972 80 LRRRVGMVFQKPNPFPMSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEV-------KDRLHDSALGLSGGQQQR 152 (247)
T ss_pred HHhheEEEecCcccCCCCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcch-------hhHhhCCcccCCHHHHHH
Confidence 78899999999999999999999875321 111 2233344444332111 033455667899999999
Q ss_pred HHHHHhcccCCCeeEEeCcccCCCHHHHHHHHHHHHHHcCCCeEEEEccCccccc-cCCEEEEEeCCEEEEecCchhhhh
Q 001411 352 IAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVR-DVDTIMVLKNGQVVESGTHVDLIS 430 (1082)
Q Consensus 352 i~lARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~vtH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~ 430 (1082)
++|||||+.+|+++||||||++||+.+...+.+.|+++.+++|+|++||+++.+. .||++++|++|++++.|+++++..
T Consensus 153 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 232 (247)
T TIGR00972 153 LCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKKKYTIVIVTHNMQQAARISDRTAFFYDGELVEYGPTEQIFT 232 (247)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCeEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 9999999999999999999999999999999999998876789999999999876 489999999999999999988764
Q ss_pred c
Q 001411 431 K 431 (1082)
Q Consensus 431 ~ 431 (1082)
.
T Consensus 233 ~ 233 (247)
T TIGR00972 233 N 233 (247)
T ss_pred C
Confidence 3
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters. |
| >PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-41 Score=374.57 Aligned_cols=216 Identities=32% Similarity=0.530 Sum_probs=181.6
Q ss_pred EEEEeEEEECCCCC--CcccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCccCCCC----CHHH
Q 001411 835 IELRNVSFKYPVRP--DITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTL----NLRS 908 (1082)
Q Consensus 835 I~~~~Vs~~Y~~~~--~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i----~~~~ 908 (1082)
|+++||+++|+... ..++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++... +...
T Consensus 3 l~~~~l~~~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (280)
T PRK13649 3 INLQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIKQ 82 (280)
T ss_pred EEEEEEEEEcCCCCccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccCHHH
Confidence 78999999997321 14699999999999999999999999999999999999999999999999998764 3567
Q ss_pred HhcceEEEcccC--ccccccHHHHhccCCC--CCCHHHH----HHHHHHhcHHHHHhhCcccccccccCCCCCCChhHHH
Q 001411 909 LRRKIGLVQQEP--ALFSTTIYENIKYGNE--DASEIEL----MKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQ 980 (1082)
Q Consensus 909 lR~~i~~VpQdp--~Lf~gTIreNl~~~~~--~~~d~ei----~~al~~a~l~~~i~~lp~gldt~v~e~G~~LSgGQrQ 980 (1082)
+|++|+|+||+| .+|+.|+++|+.++.. ..+.++. .++++..++.+ ........+|||||||
T Consensus 83 ~~~~i~~~~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~~LSgG~~q 152 (280)
T PRK13649 83 IRKKVGLVFQFPESQLFEETVLKDVAFGPQNFGVSQEEAEALAREKLALVGISE----------SLFEKNPFELSGGQMR 152 (280)
T ss_pred HHhheEEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCh----------hhhhCCcccCCHHHHH
Confidence 889999999998 6888999999986421 1233332 22333333321 1234455679999999
Q ss_pred HHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEecCchhhhc-cCEEEEEeCCEEEEecChHHH
Q 001411 981 RVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLM-EGRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGSHEQL 1058 (1082)
Q Consensus 981 rlaLARAlL~~~~ILlLDEaTS~LD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~G~~~eL 1058 (1082)
|++|||||+++|++|||||||++||+++.+.+.+.|++.. +++|||+|||+++.+.. ||+|++|++|++++.|+++++
T Consensus 153 rv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 232 (280)
T PRK13649 153 RVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLMDDVANYADFVYVLEKGKLVLSGKPKDI 232 (280)
T ss_pred HHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999875 47899999999999865 999999999999999999998
Q ss_pred hh
Q 001411 1059 LR 1060 (1082)
Q Consensus 1059 l~ 1060 (1082)
.+
T Consensus 233 ~~ 234 (280)
T PRK13649 233 FQ 234 (280)
T ss_pred hc
Confidence 75
|
|
| >PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-41 Score=375.88 Aligned_cols=216 Identities=33% Similarity=0.555 Sum_probs=181.2
Q ss_pred cEEEEeEEEECCCCC--CcccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCccCCCC----CHH
Q 001411 834 NIELRNVSFKYPVRP--DITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTL----NLR 907 (1082)
Q Consensus 834 ~I~~~~Vs~~Y~~~~--~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i----~~~ 907 (1082)
.|+++||+++|+... ..++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++... +..
T Consensus 2 ~i~~~~l~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (287)
T PRK13641 2 SIKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLK 81 (287)
T ss_pred EEEEEEEEEEcCCCCCccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 378999999996321 14699999999999999999999999999999999999999999999999998653 345
Q ss_pred HHhcceEEEcccC--ccccccHHHHhccCCC--CCCHHH----HHHHHHHhcHHHHHhhCcccccc-cccCCCCCCChhH
Q 001411 908 SLRRKIGLVQQEP--ALFSTTIYENIKYGNE--DASEIE----LMKATKAANAHGFISRMPEGYQS-HVGDRGVQLSGGQ 978 (1082)
Q Consensus 908 ~lR~~i~~VpQdp--~Lf~gTIreNl~~~~~--~~~d~e----i~~al~~a~l~~~i~~lp~gldt-~v~e~G~~LSgGQ 978 (1082)
..|+.++|+||+| .+|..|+++|+.++.. ..+.++ +.++++.++ ++. .......+|||||
T Consensus 82 ~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~g-----------L~~~~~~~~~~~LSgGq 150 (287)
T PRK13641 82 KLRKKVSLVFQFPEAQLFENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVG-----------LSEDLISKSPFELSGGQ 150 (287)
T ss_pred HHHhceEEEEeChhhhhccchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcC-----------CChhHhhCCcccCCHHH
Confidence 6788999999998 5888899999976421 122222 233333433 331 2234456899999
Q ss_pred HHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEecCchhhh-ccCEEEEEeCCEEEEecChH
Q 001411 979 KQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLM-EGRTTIMVAHRLSTIR-NADKIAVLQQGKVAEIGSHE 1056 (1082)
Q Consensus 979 rQrlaLARAlL~~~~ILlLDEaTS~LD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~-~~DrI~Vl~~G~ive~G~~~ 1056 (1082)
|||++|||||+++|++|||||||++||+.+.+.+.+.|++.. ++.|||++||+++.+. .||+|++|++|++++.|+++
T Consensus 151 ~qrl~laral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tvlivsH~~~~~~~~~d~v~~l~~G~i~~~g~~~ 230 (287)
T PRK13641 151 MRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMDDVAEYADDVLVLEHGKLIKHASPK 230 (287)
T ss_pred HHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 999999999999999999999999999999999999999875 4789999999999986 49999999999999999999
Q ss_pred HHhh
Q 001411 1057 QLLR 1060 (1082)
Q Consensus 1057 eLl~ 1060 (1082)
++++
T Consensus 231 ~~~~ 234 (287)
T PRK13641 231 EIFS 234 (287)
T ss_pred HHhc
Confidence 9875
|
|
| >TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-41 Score=385.51 Aligned_cols=209 Identities=29% Similarity=0.439 Sum_probs=177.4
Q ss_pred cccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCc----cCCCCCHHHH---h-cceEEEcccCc
Q 001411 850 ITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGY----DIRTLNLRSL---R-RKIGLVQQEPA 921 (1082)
Q Consensus 850 ~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~----di~~i~~~~l---R-~~i~~VpQdp~ 921 (1082)
..+|+|+||+|++||+++|+|+||||||||+++|.|+++|++|+|++||. ++...+...+ | ++|+||||++.
T Consensus 37 ~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vfQ~~~ 116 (382)
T TIGR03415 37 VVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMVFQKFA 116 (382)
T ss_pred EEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEecccccccCCHHHHHHHhcCCEEEEECCCc
Confidence 35899999999999999999999999999999999999999999999995 6777765554 3 58999999999
Q ss_pred ccc-ccHHHHhccCCC--CCCH----HHHHHHHHHhcHHHHHhhCcccccccccCCCCCCChhHHHHHHHHHHHccCCCE
Q 001411 922 LFS-TTIYENIKYGNE--DASE----IELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSI 994 (1082)
Q Consensus 922 Lf~-gTIreNl~~~~~--~~~d----~ei~~al~~a~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlaLARAlL~~~~I 994 (1082)
+|+ .|+++|+.++.. ..+. +...++++.+++.++..+ ...+||||||||++|||||+++|+|
T Consensus 117 l~p~~Tv~eNi~~~~~~~g~~~~~~~~~a~e~le~vgL~~~~~~-----------~~~~LSgGq~QRV~LARALa~~P~I 185 (382)
T TIGR03415 117 LMPWLTVEENVAFGLEMQGMPEAERRKRVDEQLELVGLAQWADK-----------KPGELSGGMQQRVGLARAFAMDADI 185 (382)
T ss_pred CCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcC-----------ChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 997 699999987531 1122 334566666666554333 3357999999999999999999999
Q ss_pred EEeeCCCCCCCHHHHHHHHHHHHHhcC--CceEEEEecCchhhh-ccCEEEEEeCCEEEEecChHHHhhhccchHHHH
Q 001411 995 LLLDEATSALDTASENLIQEALDKLME--GRTTIMVAHRLSTIR-NADKIAVLQQGKVAEIGSHEQLLRKENGIYKQL 1069 (1082)
Q Consensus 995 LlLDEaTS~LD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~-~~DrI~Vl~~G~ive~G~~~eLl~~~~g~f~~l 1069 (1082)
||||||||+||+.+.+.+++.|.+..+ ++|+|+|||+++.+. .||||++|++|++++.|++++++.++...|.+.
T Consensus 186 LLlDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~e~~~l~DrI~vl~~G~iv~~g~~~ei~~~p~~~~~~~ 263 (382)
T TIGR03415 186 LLMDEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDLDEALKIGNRIAIMEGGRIIQHGTPEEIVLNPANDYVAD 263 (382)
T ss_pred EEEECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHhhCcchHHHHH
Confidence 999999999999999999999998753 789999999999985 599999999999999999999987655545443
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines. |
| >TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-41 Score=369.51 Aligned_cols=211 Identities=35% Similarity=0.601 Sum_probs=178.3
Q ss_pred EEEEEEEEECCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHHhCCCCCCcEEEECCeeCCCCCH---HHHhhh
Q 001411 206 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQL---KWLREQ 282 (1082)
Q Consensus 206 i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~---~~~~~~ 282 (1082)
++++|++++|+. ..++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. ..+++.
T Consensus 2 l~~~~l~~~~~~-~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 80 (243)
T TIGR02315 2 LEVENLSKVYPN-GKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKLRRR 80 (243)
T ss_pred eEEEeeeeecCC-CcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCCHHHHHHHHhh
Confidence 679999999972 2349999999999999999999999999999999999999999999999999876653 346788
Q ss_pred ceEEccCCCcChh-cHHHHHhcCCCCC-----------C---HHHHHHHHHHhchHHHHhcCCCCccccccCCCCCCChH
Q 001411 283 MGLVSQEPALFAT-SIANNILLGKEDA-----------S---MDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGG 347 (1082)
Q Consensus 283 i~~v~Q~~~l~~~-ti~~ni~~g~~~~-----------~---~~~~~~~~~~~~~~~~i~~lp~g~~t~~g~~g~~LSgG 347 (1082)
++|++|++.+|+. |++||+.++.... . .+++.++ ++.+ |+.........+||||
T Consensus 81 i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------l~~~--~l~~~~~~~~~~LSgG 149 (243)
T TIGR02315 81 IGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSA---------LERV--GLADKAYQRADQLSGG 149 (243)
T ss_pred eEEEcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHH---------HHHc--CcHhhhcCCcccCCHH
Confidence 9999999998874 9999998764211 0 1122222 3333 4444455667799999
Q ss_pred HHHHHHHHHhcccCCCeeEEeCcccCCCHHHHHHHHHHHHHHc--CCCeEEEEccCccccc-cCCEEEEEeCCEEEEecC
Q 001411 348 QKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIM--SNRTTIVVAHRLSTVR-DVDTIMVLKNGQVVESGT 424 (1082)
Q Consensus 348 qkqri~lARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~--~~~t~i~vtH~~~~~~-~~d~i~~l~~G~i~~~g~ 424 (1082)
||||++|||||+.+|+++||||||++||+.+.+.+.+.|.++. .++|+|++||+++.+. .||++++|++|++++.|+
T Consensus 150 ~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~~~ 229 (243)
T TIGR02315 150 QQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVDLAKKYADRIVGLKAGEIVFDGA 229 (243)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEecCC
Confidence 9999999999999999999999999999999999999999874 3689999999999985 589999999999999999
Q ss_pred chhh
Q 001411 425 HVDL 428 (1082)
Q Consensus 425 ~~~l 428 (1082)
++++
T Consensus 230 ~~~~ 233 (243)
T TIGR02315 230 PSEL 233 (243)
T ss_pred HHHh
Confidence 8876
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates. |
| >cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-42 Score=364.46 Aligned_cols=203 Identities=36% Similarity=0.581 Sum_probs=170.6
Q ss_pred EEEEEEEEECCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHHhCCCCCCcEEEECCeeCCCCCHHHHhhhceE
Q 001411 206 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGL 285 (1082)
Q Consensus 206 i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 285 (1082)
++++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. .++.++|
T Consensus 1 l~~~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~--~~~~i~~ 76 (213)
T cd03259 1 LELKGLSKTYGS--VRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPP--ERRNIGM 76 (213)
T ss_pred CeeeeeEEEeCC--eeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcCch--hhccEEE
Confidence 468999999975 349999999999999999999999999999999999999999999999999876443 4678999
Q ss_pred EccCCCcCh-hcHHHHHhcCCCCC--CH----HHHHHHHHHhchHHHHhcCCCCccccccCCCCCCChHHHHHHHHHHhc
Q 001411 286 VSQEPALFA-TSIANNILLGKEDA--SM----DRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAV 358 (1082)
Q Consensus 286 v~Q~~~l~~-~ti~~ni~~g~~~~--~~----~~~~~~~~~~~~~~~i~~lp~g~~t~~g~~g~~LSgGqkqri~lARal 358 (1082)
++|++.++. .|++||+.++.... .. +++.++++.. |++........+||||||||++|||||
T Consensus 77 v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~~~LSgG~~qrl~la~al 145 (213)
T cd03259 77 VFQDYALFPHLTVAENIAFGLKLRGVPKAEIRARVRELLELV-----------GLEGLLNRYPHELSGGQQQRVALARAL 145 (213)
T ss_pred EcCchhhccCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHc-----------CChhhhhcChhhCCHHHHHHHHHHHHH
Confidence 999998886 49999998753211 11 2233333333 333334445568999999999999999
Q ss_pred ccCCCeeEEeCcccCCCHHHHHHHHHHHHHHc--CCCeEEEEccCcccccc-CCEEEEEeCCEEEEec
Q 001411 359 LRNPKILLLDEATSALDAESELIVQRALEKIM--SNRTTIVVAHRLSTVRD-VDTIMVLKNGQVVESG 423 (1082)
Q Consensus 359 ~~~~~illlDEpts~LD~~~~~~i~~~l~~~~--~~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~g 423 (1082)
+.+|+++||||||++||+.+.+.+.+.|.++. .++|+|++||+++.+.. ||+|++|++|++++.|
T Consensus 146 ~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~g 213 (213)
T cd03259 146 AREPSLLLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQEEALALADRIAVMNEGRIVQVG 213 (213)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhcCEEEEEECCEEEecC
Confidence 99999999999999999999999999999874 37899999999998754 8999999999998765
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-41 Score=376.72 Aligned_cols=220 Identities=32% Similarity=0.593 Sum_probs=184.7
Q ss_pred cEEEEEEEEECCCCC---CccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHHhCCCCCCcEEEECCeeCCCC----CHH
Q 001411 205 QIEFSEVCFAYPSRP---HMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSL----QLK 277 (1082)
Q Consensus 205 ~i~~~~v~~~y~~~~---~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~----~~~ 277 (1082)
.++++|++|+|++.. .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||+++... +..
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 81 (286)
T PRK13646 2 TIRFDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIR 81 (286)
T ss_pred EEEEEEEEEEECCCCccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 378999999997422 3599999999999999999999999999999999999999999999999998653 345
Q ss_pred HHhhhceEEccCC--CcChhcHHHHHhcCCCC--CCHHHHHHHHHHhchHHHHhcCCCCccc-cccCCCCCCChHHHHHH
Q 001411 278 WLREQMGLVSQEP--ALFATSIANNILLGKED--ASMDRVIEAAKAANAHSFVEGLPDGYQT-QVGEGGTQLSGGQKQRI 352 (1082)
Q Consensus 278 ~~~~~i~~v~Q~~--~l~~~ti~~ni~~g~~~--~~~~~~~~~~~~~~~~~~i~~lp~g~~t-~~g~~g~~LSgGqkqri 352 (1082)
.+|+.||||+|+| .+|+.|+.|||.++... .+.++..+. +.+.++.+ |+++ .....+.+||||||||+
T Consensus 82 ~~~~~ig~v~q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~-----~~~~l~~~--gL~~~~~~~~~~~LSgGq~qrv 154 (286)
T PRK13646 82 PVRKRIGMVFQFPESQLFEDTVEREIIFGPKNFKMNLDEVKNY-----AHRLLMDL--GFSRDVMSQSPFQMSGGQMRKI 154 (286)
T ss_pred HHHhheEEEecChHhccchhhHHHHHHhhHHHcCCCHHHHHHH-----HHHHHHHc--CCChhhhhCCcccCCHHHHHHH
Confidence 6788999999997 68888999999986422 122222221 12333333 6653 45567789999999999
Q ss_pred HHHHhcccCCCeeEEeCcccCCCHHHHHHHHHHHHHHc--CCCeEEEEccCccccc-cCCEEEEEeCCEEEEecCchhhh
Q 001411 353 AIARAVLRNPKILLLDEATSALDAESELIVQRALEKIM--SNRTTIVVAHRLSTVR-DVDTIMVLKNGQVVESGTHVDLI 429 (1082)
Q Consensus 353 ~lARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~--~~~t~i~vtH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~ 429 (1082)
+|||||+.+|+++||||||++||+.+...+.+.|+++. .++|+|+|||+++.+. .||+|++|++|++++.|+++++.
T Consensus 155 ~laraL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~ 234 (286)
T PRK13646 155 AIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMNEVARYADEVIVMKEGSIVSQTSPKELF 234 (286)
T ss_pred HHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 99999999999999999999999999999999999874 3789999999999875 58999999999999999998886
Q ss_pred hc
Q 001411 430 SK 431 (1082)
Q Consensus 430 ~~ 431 (1082)
+.
T Consensus 235 ~~ 236 (286)
T PRK13646 235 KD 236 (286)
T ss_pred hC
Confidence 54
|
|
| >PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-41 Score=368.08 Aligned_cols=217 Identities=27% Similarity=0.478 Sum_probs=183.7
Q ss_pred cEEEEeEEEECCCCCCcccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCccCCCCCHHH-Hhcc
Q 001411 834 NIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRS-LRRK 912 (1082)
Q Consensus 834 ~I~~~~Vs~~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~-lR~~ 912 (1082)
.|+++||+++|+ +.++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+... .|+.
T Consensus 3 ~l~~~~l~~~~~---~~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 79 (241)
T PRK10895 3 TLTAKNLAKAYK---GRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRG 79 (241)
T ss_pred eEEEeCcEEEeC---CEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHHhC
Confidence 388999999996 347999999999999999999999999999999999999999999999999998877644 5789
Q ss_pred eEEEcccCccccc-cHHHHhccCCC---CCCHHHHHHHHHHhcHHHHHhhCcccccccccCCCCCCChhHHHHHHHHHHH
Q 001411 913 IGLVQQEPALFST-TIYENIKYGNE---DASEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAI 988 (1082)
Q Consensus 913 i~~VpQdp~Lf~g-TIreNl~~~~~---~~~d~ei~~al~~a~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlaLARAl 988 (1082)
++|+||++.+|++ |++||+.++.. ..+.++. ...+.++++.+ |++.........||||||||++||||+
T Consensus 80 i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~-----~~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~laral 152 (241)
T PRK10895 80 IGYLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQR-----EDRANELMEEF--HIEHLRDSMGQSLSGGERRRVEIARAL 152 (241)
T ss_pred eEEeccCCcccccCcHHHHHhhhhhcccccCHHHH-----HHHHHHHHHHc--CCHHHhhcchhhCCHHHHHHHHHHHHH
Confidence 9999999998874 99999986421 1122211 11223344443 444445556678999999999999999
Q ss_pred ccCCCEEEeeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEecCchhhhc-cCEEEEEeCCEEEEecChHHHhh
Q 001411 989 LKNPSILLLDEATSALDTASENLIQEALDKLM-EGRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGSHEQLLR 1060 (1082)
Q Consensus 989 L~~~~ILlLDEaTS~LD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~G~~~eLl~ 1060 (1082)
+++|++|||||||++||+.+.+.+.+.+++.. +++|+|++||+++.+.. ||+|++|++|++++.|++++++.
T Consensus 153 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~ 226 (241)
T PRK10895 153 AANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVRETLAVCERAYIVSQGHLIAHGTPTEILQ 226 (241)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEEeCCeEEeeCCHHHHhc
Confidence 99999999999999999999999999998865 47899999999988755 99999999999999999999875
|
|
| >PRK14273 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-41 Score=371.00 Aligned_cols=219 Identities=29% Similarity=0.449 Sum_probs=183.4
Q ss_pred CcEEEEEEEEECCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHHhCCCC-----CCcEEEECCeeCCC--CCH
Q 001411 204 GQIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEP-----TSGKILLDGHDLKS--LQL 276 (1082)
Q Consensus 204 ~~i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~-----~~G~i~~~g~~~~~--~~~ 276 (1082)
..++++|++++|++ ..+|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.++|+++.. .+.
T Consensus 6 ~~l~~~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 83 (254)
T PRK14273 6 AIIETENLNLFYTD--FKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFDI 83 (254)
T ss_pred ceEEEeeeEEEeCC--ceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecccccccH
Confidence 46999999999974 3499999999999999999999999999999999999997 49999999998853 344
Q ss_pred HHHhhhceEEccCCCcChhcHHHHHhcCCCCC---C----HHHHHHHHHHhchHHHHhcCCCCccccccCCCCCCChHHH
Q 001411 277 KWLREQMGLVSQEPALFATSIANNILLGKEDA---S----MDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQK 349 (1082)
Q Consensus 277 ~~~~~~i~~v~Q~~~l~~~ti~~ni~~g~~~~---~----~~~~~~~~~~~~~~~~i~~lp~g~~t~~g~~g~~LSgGqk 349 (1082)
..+++.|+|++|++.+|+.|++|||.++.... . .+++.++++..++.+.+ ++. ....+.+||||||
T Consensus 84 ~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l---~~~----~~~~~~~LSgG~~ 156 (254)
T PRK14273 84 LELRRKIGMVFQTPNPFLMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEV---KDK----LNTNALSLSGGQQ 156 (254)
T ss_pred HHHhhceEEEeeccccccCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhh---HHH----HhCCcccCCHHHH
Confidence 56788899999999999899999998864211 1 12334444444432211 122 3345678999999
Q ss_pred HHHHHHHhcccCCCeeEEeCcccCCCHHHHHHHHHHHHHHcCCCeEEEEccCcccccc-CCEEEEEeCCEEEEecCchhh
Q 001411 350 QRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRD-VDTIMVLKNGQVVESGTHVDL 428 (1082)
Q Consensus 350 qri~lARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l 428 (1082)
||++|||||+.+|+++||||||++||+.+...+.+.|.++.+++|+|++||+++.+.. ||+|++|++|++++.|+++++
T Consensus 157 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 236 (254)
T PRK14273 157 QRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLKESYTIIIVTHNMQQAGRISDRTAFFLNGCIEEESSTDEL 236 (254)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999998777899999999998754 899999999999999999988
Q ss_pred hhc
Q 001411 429 ISK 431 (1082)
Q Consensus 429 ~~~ 431 (1082)
.++
T Consensus 237 ~~~ 239 (254)
T PRK14273 237 FFN 239 (254)
T ss_pred HhC
Confidence 654
|
|
| >PRK14252 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-41 Score=371.55 Aligned_cols=223 Identities=30% Similarity=0.498 Sum_probs=190.0
Q ss_pred cccccEEEEeEEEECCCCCCcccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccC-----CccEEEECCccCC--
Q 001411 830 EIKGNIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDP-----ISGTVLIDGYDIR-- 902 (1082)
Q Consensus 830 ~~~g~I~~~~Vs~~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p-----~~G~I~idG~di~-- 902 (1082)
+..+.|+++|++++|+ +.++|+|+||+|++||++||+|+||||||||+++|.|+.+| ++|+|.+||.++.
T Consensus 12 ~~~~~l~~~~l~~~~~---~~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~ 88 (265)
T PRK14252 12 PTQQKSEVNKLNFYYG---GYQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNIL 88 (265)
T ss_pred CCCceEEEEEEEEEEC---CeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCcccccc
Confidence 4456799999999996 34699999999999999999999999999999999999975 7999999998874
Q ss_pred --CCCHHHHhcceEEEcccCccccccHHHHhccCCC--C-----CCHHHHHHHHHHhcHHHHHhhCcccccccccCCCCC
Q 001411 903 --TLNLRSLRRKIGLVQQEPALFSTTIYENIKYGNE--D-----ASEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQ 973 (1082)
Q Consensus 903 --~i~~~~lR~~i~~VpQdp~Lf~gTIreNl~~~~~--~-----~~d~ei~~al~~a~l~~~i~~lp~gldt~v~e~G~~ 973 (1082)
......+|++++|+||++.+|.+|+++|+.++.. . ..++++.++++.+++.+.+ ....+.....
T Consensus 89 ~~~~~~~~~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l-------~~~~~~~~~~ 161 (265)
T PRK14252 89 SPEVDPIEVRMRISMVFQKPNPFPKSIFENVAYGLRIRGVKRRSILEERVENALRNAALWDEV-------KDRLGDLAFN 161 (265)
T ss_pred ccccCHHHHhccEEEEccCCcCCcchHHHHHHhHHHHcCCChHHHHHHHHHHHHHHcCCchhh-------hHHHhCCccc
Confidence 3345678899999999999999999999986421 1 1134566666666654322 2334455678
Q ss_pred CChhHHHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhc-cCEEEEEeCCEEEEe
Q 001411 974 LSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLMEGRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEI 1052 (1082)
Q Consensus 974 LSgGQrQrlaLARAlL~~~~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~ 1052 (1082)
||||||||++|||||+++|++|||||||++||+.+.+.+.+.|++..+++|+|+|||+++.+.. ||+|++|++|++++.
T Consensus 162 LS~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~tiiivth~~~~~~~~~d~i~~l~~G~i~~~ 241 (265)
T PRK14252 162 LSGGQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELISDLKNKVTILIVTHNMQQAARVSDYTAYMYMGELIEF 241 (265)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCEEEEEecCHHHHHHhCCEEEEEECCEEEEe
Confidence 9999999999999999999999999999999999999999999988767899999999999965 999999999999999
Q ss_pred cChHHHhhhc
Q 001411 1053 GSHEQLLRKE 1062 (1082)
Q Consensus 1053 G~~~eLl~~~ 1062 (1082)
|+++++...+
T Consensus 242 g~~~~~~~~~ 251 (265)
T PRK14252 242 GATDTIFIKP 251 (265)
T ss_pred CCHHHHHhCC
Confidence 9999997533
|
|
| >PRK14242 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-41 Score=371.91 Aligned_cols=218 Identities=29% Similarity=0.510 Sum_probs=183.9
Q ss_pred cEEEEEEEEECCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHHhCCC-----CCCcEEEECCeeCCC--CCHH
Q 001411 205 QIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYE-----PTSGKILLDGHDLKS--LQLK 277 (1082)
Q Consensus 205 ~i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~-----~~~G~i~~~g~~~~~--~~~~ 277 (1082)
.|+++|++++|++ ..+|+|+||++++||+++|+||||||||||+++|+|+++ |++|+|.++|+++.. .+..
T Consensus 6 ~l~~~~l~~~~~~--~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 83 (253)
T PRK14242 6 KMEARGLSFFYGD--FQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVDVV 83 (253)
T ss_pred EEEEeeeEEEECC--eeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccccCHH
Confidence 5999999999974 349999999999999999999999999999999999974 689999999999864 3455
Q ss_pred HHhhhceEEccCCCcChhcHHHHHhcCCCC--C-C----HHHHHHHHHHhchHHHHhcCCCCccccccCCCCCCChHHHH
Q 001411 278 WLREQMGLVSQEPALFATSIANNILLGKED--A-S----MDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQ 350 (1082)
Q Consensus 278 ~~~~~i~~v~Q~~~l~~~ti~~ni~~g~~~--~-~----~~~~~~~~~~~~~~~~i~~lp~g~~t~~g~~g~~LSgGqkq 350 (1082)
.+++.++|++|++.+|+.|++||+.++... . . .+++.++++..++.+.+ .+..+....+|||||||
T Consensus 84 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LSgGq~q 156 (253)
T PRK14242 84 ELRRRVGMVFQKPNPFPKSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEV-------KDRLHESALGLSGGQQQ 156 (253)
T ss_pred HHhhcEEEEecCCCCCcCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhh-------hHHhhCCcccCCHHHHH
Confidence 678899999999999989999999875311 1 1 22344444444443222 22345667799999999
Q ss_pred HHHHHHhcccCCCeeEEeCcccCCCHHHHHHHHHHHHHHcCCCeEEEEccCccccc-cCCEEEEEeCCEEEEecCchhhh
Q 001411 351 RIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVR-DVDTIMVLKNGQVVESGTHVDLI 429 (1082)
Q Consensus 351 ri~lARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~vtH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~ 429 (1082)
|++|||||+.+|+++||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+. .||+|++|++|++++.|+++++.
T Consensus 157 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 236 (253)
T PRK14242 157 RLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELKARYTIIIVTHNMQQAARVSDVTAFFYMGKLIEVGPTEQIF 236 (253)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCeEEEEEecHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 99999999999999999999999999999999999999876789999999999885 59999999999999999998876
Q ss_pred hc
Q 001411 430 SK 431 (1082)
Q Consensus 430 ~~ 431 (1082)
+.
T Consensus 237 ~~ 238 (253)
T PRK14242 237 TR 238 (253)
T ss_pred cC
Confidence 53
|
|
| >TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-41 Score=365.28 Aligned_cols=211 Identities=36% Similarity=0.560 Sum_probs=181.7
Q ss_pred EEEEeEEEECCCCCCcccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCccCCCCCHHHHhcceE
Q 001411 835 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRKIG 914 (1082)
Q Consensus 835 I~~~~Vs~~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR~~i~ 914 (1082)
|+++|++++|+ +.++|+|+||+|.+||++||+|+||||||||+++|.|+++|++|+|.+||.++...+. .|+.++
T Consensus 1 i~i~~l~~~~~---~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~i~g~~~~~~~~--~~~~i~ 75 (237)
T TIGR00968 1 IEIANISKRFG---SFQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHA--RDRKIG 75 (237)
T ss_pred CEEEEEEEEEC---CeeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCh--hhcCEE
Confidence 57899999996 3469999999999999999999999999999999999999999999999999886653 478899
Q ss_pred EEcccCccccc-cHHHHhccCCC--CCC----HHHHHHHHHHhcHHHHHhhCcccccccccCCCCCCChhHHHHHHHHHH
Q 001411 915 LVQQEPALFST-TIYENIKYGNE--DAS----EIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARA 987 (1082)
Q Consensus 915 ~VpQdp~Lf~g-TIreNl~~~~~--~~~----d~ei~~al~~a~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlaLARA 987 (1082)
|+||+|.+|++ |+++|+.++.. ..+ ++++.++++..++.++.. ....+||+||+||++||||
T Consensus 76 ~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~lS~G~~qrl~lara 144 (237)
T TIGR00968 76 FVFQHYALFKHLTVRDNIAFGLEIRKHPKAKIKARVEELLELVQLEGLGD-----------RYPNQLSGGQRQRVALARA 144 (237)
T ss_pred EEecChhhccCCcHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCCHhHhh-----------CChhhCCHHHHHHHHHHHH
Confidence 99999999975 99999986432 111 233455555555544433 2336799999999999999
Q ss_pred HccCCCEEEeeCCCCCCCHHHHHHHHHHHHHhcC--CceEEEEecCchhhhc-cCEEEEEeCCEEEEecChHHHhhh
Q 001411 988 ILKNPSILLLDEATSALDTASENLIQEALDKLME--GRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGSHEQLLRK 1061 (1082)
Q Consensus 988 lL~~~~ILlLDEaTS~LD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~G~~~eLl~~ 1061 (1082)
++++|+++||||||++||+++.+.+.+.|++..+ ++|+|++||+++.+.. ||+|++|++|++++.|+++++++.
T Consensus 145 l~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~~~~ 221 (237)
T TIGR00968 145 LAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQEEAMEVADRIVVMSNGKIEQIGSPDEVYDH 221 (237)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEECCEEEEecCHHHHHcC
Confidence 9999999999999999999999999999998654 7899999999999865 999999999999999999999753
|
|
| >PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-41 Score=377.37 Aligned_cols=216 Identities=29% Similarity=0.485 Sum_probs=181.3
Q ss_pred EEEEEEEEECCCCC---CccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHHhCCCCCCcEEEECCeeCCC----CCHHH
Q 001411 206 IEFSEVCFAYPSRP---HMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKS----LQLKW 278 (1082)
Q Consensus 206 i~~~~v~~~y~~~~---~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~----~~~~~ 278 (1082)
++++|++|+|++.. .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++.. .+...
T Consensus 3 l~~~~l~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (290)
T PRK13634 3 ITFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLKP 82 (290)
T ss_pred EEEEEEEEEECCCCcccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHH
Confidence 78999999997422 359999999999999999999999999999999999999999999999999863 34556
Q ss_pred HhhhceEEccCC--CcChhcHHHHHhcCCCC--CCHH----HHHHHHHHhchHHHHhcCCCCccccccCCCCCCChHHHH
Q 001411 279 LREQMGLVSQEP--ALFATSIANNILLGKED--ASMD----RVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQ 350 (1082)
Q Consensus 279 ~~~~i~~v~Q~~--~l~~~ti~~ni~~g~~~--~~~~----~~~~~~~~~~~~~~i~~lp~g~~t~~g~~g~~LSgGqkq 350 (1082)
+++.|+||+|+| .+|+.|++|||.++... .+.+ ++.++++..++.+ .........|||||||
T Consensus 83 ~~~~ig~v~q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~----------~~~~~~~~~LSgGq~q 152 (290)
T PRK13634 83 LRKKVGIVFQFPEHQLFEETVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPE----------ELLARSPFELSGGQMR 152 (290)
T ss_pred HHhhEEEEeeCchhhhhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCCh----------hhhhCCcccCCHHHHH
Confidence 778899999998 68888999999987432 1222 2333333333321 1234556789999999
Q ss_pred HHHHHHhcccCCCeeEEeCcccCCCHHHHHHHHHHHHHHcC--CCeEEEEccCccccc-cCCEEEEEeCCEEEEecCchh
Q 001411 351 RIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMS--NRTTIVVAHRLSTVR-DVDTIMVLKNGQVVESGTHVD 427 (1082)
Q Consensus 351 ri~lARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~vtH~~~~~~-~~d~i~~l~~G~i~~~g~~~~ 427 (1082)
|++|||||+.+|+++||||||++||+.+...+.+.|+++.+ +.|+|++||+++.+. .||||++|++|++++.|++++
T Consensus 153 rv~lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~~~~~~~drv~~l~~G~i~~~g~~~~ 232 (290)
T PRK13634 153 RVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSMEDAARYADQIVVMHKGTVFLQGTPRE 232 (290)
T ss_pred HHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHH
Confidence 99999999999999999999999999999999999998753 789999999999875 599999999999999999988
Q ss_pred hhhc
Q 001411 428 LISK 431 (1082)
Q Consensus 428 l~~~ 431 (1082)
+.+.
T Consensus 233 ~~~~ 236 (290)
T PRK13634 233 IFAD 236 (290)
T ss_pred HhcC
Confidence 8654
|
|
| >PRK14241 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-41 Score=370.90 Aligned_cols=218 Identities=32% Similarity=0.532 Sum_probs=184.4
Q ss_pred cEEEEeEEEECCCCCCcccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccC-----CccEEEECCccCCC--CCH
Q 001411 834 NIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDP-----ISGTVLIDGYDIRT--LNL 906 (1082)
Q Consensus 834 ~I~~~~Vs~~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p-----~~G~I~idG~di~~--i~~ 906 (1082)
.++++||+++|+ +.++|+|+||+|++||++||+|+||||||||+++|.|+++| ++|+|.+||.++.. .+.
T Consensus 4 ~l~i~~v~~~~~---~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~ 80 (258)
T PRK14241 4 RIDVKDLNIYYG---SFHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDP 80 (258)
T ss_pred cEEEeeEEEEEC---CEeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccccCh
Confidence 489999999996 34699999999999999999999999999999999999974 69999999999853 445
Q ss_pred HHHhcceEEEcccCcccc-ccHHHHhccCCC---CCC----HHHHHHHHHHhcHHHHHhhCcccccccccCCCCCCChhH
Q 001411 907 RSLRRKIGLVQQEPALFS-TTIYENIKYGNE---DAS----EIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQ 978 (1082)
Q Consensus 907 ~~lR~~i~~VpQdp~Lf~-gTIreNl~~~~~---~~~----d~ei~~al~~a~l~~~i~~lp~gldt~v~e~G~~LSgGQ 978 (1082)
..+|+.++|++|++.+|+ .|+++|+.++.. ..+ ++.+.++++.+++.+.+. ........+|||||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~G~ 153 (258)
T PRK14241 81 VAVRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEVK-------DRLDKPGGGLSGGQ 153 (258)
T ss_pred HHHhcceEEEccccccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhh-------hHhhCCcccCCHHH
Confidence 678899999999999997 599999975421 111 233455566666543321 22334556799999
Q ss_pred HHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhc-cCEEEEEe------CCEEEE
Q 001411 979 KQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLMEGRTTIMVAHRLSTIRN-ADKIAVLQ------QGKVAE 1051 (1082)
Q Consensus 979 rQrlaLARAlL~~~~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~-~DrI~Vl~------~G~ive 1051 (1082)
|||++||||++++|++|||||||++||+.+...+.+.|++..+++|+|+|||+++.+.. ||+|++|+ +|+|++
T Consensus 154 ~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tviivsH~~~~~~~~~d~i~~l~~~~~~~~g~i~~ 233 (258)
T PRK14241 154 QQRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELKQDYTIVIVTHNMQQAARVSDQTAFFNLEATGKPGRLVE 233 (258)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEecccCCCCceEEe
Confidence 99999999999999999999999999999999999999988667899999999999864 99999997 899999
Q ss_pred ecChHHHhhh
Q 001411 1052 IGSHEQLLRK 1061 (1082)
Q Consensus 1052 ~G~~~eLl~~ 1061 (1082)
.|++++++..
T Consensus 234 ~~~~~~~~~~ 243 (258)
T PRK14241 234 IDDTEKIFSN 243 (258)
T ss_pred cCCHHHHHhC
Confidence 9999999764
|
|
| >cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-41 Score=362.80 Aligned_cols=202 Identities=35% Similarity=0.534 Sum_probs=173.0
Q ss_pred EEEEeEEEECCCCCCcccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCccCCCCCH---HHHhc
Q 001411 835 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNL---RSLRR 911 (1082)
Q Consensus 835 I~~~~Vs~~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~---~~lR~ 911 (1082)
|+++|++++|+. ..++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+. ..+|+
T Consensus 1 l~~~~l~~~~~~--~~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~ 78 (214)
T cd03292 1 IEFINVTKTYPN--GTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLRR 78 (214)
T ss_pred CEEEEEEEEeCC--CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHHH
Confidence 478999999963 2469999999999999999999999999999999999999999999999999987754 35788
Q ss_pred ceEEEcccCcccc-ccHHHHhccCCC--CCC----HHHHHHHHHHhcHHHHHhhCcccccccccCCCCCCChhHHHHHHH
Q 001411 912 KIGLVQQEPALFS-TTIYENIKYGNE--DAS----EIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAI 984 (1082)
Q Consensus 912 ~i~~VpQdp~Lf~-gTIreNl~~~~~--~~~----d~ei~~al~~a~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlaL 984 (1082)
+++||||+|.+|+ .|+++|+.++.. ..+ ++++.++++..++.+...+ ...+||||||||++|
T Consensus 79 ~i~~v~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrv~l 147 (214)
T cd03292 79 KIGVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRVPAALELVGLSHKHRA-----------LPAELSGGEQQRVAI 147 (214)
T ss_pred heEEEecCchhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhC-----------ChhhcCHHHHHHHHH
Confidence 9999999999998 499999986421 112 2345566666666544333 335799999999999
Q ss_pred HHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEecCchhhhc-cCEEEEEeCCEE
Q 001411 985 ARAILKNPSILLLDEATSALDTASENLIQEALDKLM-EGRTTIMVAHRLSTIRN-ADKIAVLQQGKV 1049 (1082)
Q Consensus 985 ARAlL~~~~ILlLDEaTS~LD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~i 1049 (1082)
||||+++|+||||||||++||+.+.+.+.+.|++.. +++|+|+|||+++.+.+ ||+|++|++|++
T Consensus 148 aral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~~ 214 (214)
T cd03292 148 ARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHAKELVDTTRHRVIALERGKL 214 (214)
T ss_pred HHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 999999999999999999999999999999999874 57999999999999976 999999999974
|
The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. |
| >PRK13651 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-41 Score=377.54 Aligned_cols=215 Identities=27% Similarity=0.471 Sum_probs=180.0
Q ss_pred EEEEEEEEECCCCC---CccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHHhCCCCCCcEEEECCeeCCC---------
Q 001411 206 IEFSEVCFAYPSRP---HMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKS--------- 273 (1082)
Q Consensus 206 i~~~~v~~~y~~~~---~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~--------- 273 (1082)
|+++|++|+|++.. .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+...
T Consensus 3 i~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 82 (305)
T PRK13651 3 IKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEKEK 82 (305)
T ss_pred EEEEEEEEEECCCCCccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEeceecccccccccccc
Confidence 78999999997532 249999999999999999999999999999999999999999999999877531
Q ss_pred ---------------CCHHHHhhhceEEccCC--CcChhcHHHHHhcCCCC--CCHH----HHHHHHHHhchHHHHhcCC
Q 001411 274 ---------------LQLKWLREQMGLVSQEP--ALFATSIANNILLGKED--ASMD----RVIEAAKAANAHSFVEGLP 330 (1082)
Q Consensus 274 ---------------~~~~~~~~~i~~v~Q~~--~l~~~ti~~ni~~g~~~--~~~~----~~~~~~~~~~~~~~i~~lp 330 (1082)
.+...+++.||||+|+| .+|..||+|||.|+... ...+ ++.++++..
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~---------- 152 (305)
T PRK13651 83 VLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSMGVSKEEAKKRAAKYIELV---------- 152 (305)
T ss_pred cccccccccccccccchHHHHHhceEEEeeCcccccccccHHHHHHhhHHHcCCCHHHHHHHHHHHHHHc----------
Confidence 13456788999999986 67888999999987432 2222 233333333
Q ss_pred CCcc-ccccCCCCCCChHHHHHHHHHHhcccCCCeeEEeCcccCCCHHHHHHHHHHHHHHc-CCCeEEEEccCcccc-cc
Q 001411 331 DGYQ-TQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIM-SNRTTIVVAHRLSTV-RD 407 (1082)
Q Consensus 331 ~g~~-t~~g~~g~~LSgGqkqri~lARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~vtH~~~~~-~~ 407 (1082)
|++ ........+||||||||++|||||+.+|++|||||||++||+.+.+.+.+.|+++. .++|+|+|||+++.+ +.
T Consensus 153 -gL~~~~~~~~~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~ 231 (305)
T PRK13651 153 -GLDESYLQRSPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLDNVLEW 231 (305)
T ss_pred -CCChhhhhCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeeCHHHHHHh
Confidence 332 23455667899999999999999999999999999999999999999999998875 478999999999977 45
Q ss_pred CCEEEEEeCCEEEEecCchhhhhc
Q 001411 408 VDTIMVLKNGQVVESGTHVDLISK 431 (1082)
Q Consensus 408 ~d~i~~l~~G~i~~~g~~~~l~~~ 431 (1082)
||||++|++|++++.|+++++.+.
T Consensus 232 adrv~vl~~G~i~~~g~~~~~~~~ 255 (305)
T PRK13651 232 TKRTIFFKDGKIIKDGDTYDILSD 255 (305)
T ss_pred CCEEEEEECCEEEEECCHHHHhcC
Confidence 999999999999999999988654
|
|
| >cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-41 Score=362.35 Aligned_cols=201 Identities=42% Similarity=0.682 Sum_probs=171.8
Q ss_pred EEEeEEEECCCCCCcccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCccCCCCCHHHHhcceEE
Q 001411 836 ELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRKIGL 915 (1082)
Q Consensus 836 ~~~~Vs~~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR~~i~~ 915 (1082)
+++||+++|+.. ..++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++...+...+|++++|
T Consensus 1 ~~~~l~~~~~~~-~~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 79 (211)
T cd03225 1 ELKNLSFSYPDG-ARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRKVGL 79 (211)
T ss_pred CceeEEEecCCC-CeeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccCCHHHHHhhceE
Confidence 478999999631 2469999999999999999999999999999999999999999999999999988888888999999
Q ss_pred EcccCc--cccccHHHHhccCCC--CCC----HHHHHHHHHHhcHHHHHhhCcccccccccCCCCCCChhHHHHHHHHHH
Q 001411 916 VQQEPA--LFSTTIYENIKYGNE--DAS----EIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARA 987 (1082)
Q Consensus 916 VpQdp~--Lf~gTIreNl~~~~~--~~~----d~ei~~al~~a~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlaLARA 987 (1082)
+||+|. ++..|+++|+.++.. ..+ ++++.+.++..++.++. ......||||||||++||||
T Consensus 80 ~~q~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LSgG~~qrv~lara 148 (211)
T cd03225 80 VFQNPDDQFFGPTVEEEVAFGLENLGLPEEEIEERVEEALELVGLEGLR-----------DRSPFTLSGGQKQRVAIAGV 148 (211)
T ss_pred EecChhhhcCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCcHhhh-----------cCCcccCCHHHHHHHHHHHH
Confidence 999983 678899999976421 112 22344455555554433 33446799999999999999
Q ss_pred HccCCCEEEeeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEecCchhhhc-cCEEEEEeCCE
Q 001411 988 ILKNPSILLLDEATSALDTASENLIQEALDKLM-EGRTTIMVAHRLSTIRN-ADKIAVLQQGK 1048 (1082)
Q Consensus 988 lL~~~~ILlLDEaTS~LD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ 1048 (1082)
|+++|++|||||||++||+++.+.+.+.|++.. +++|+|+|||+++.+.. ||+|++|++|+
T Consensus 149 l~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~G~ 211 (211)
T cd03225 149 LAMDPDILLLDEPTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDLDLLLELADRVIVLEDGK 211 (211)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCC
Confidence 999999999999999999999999999999875 47899999999999987 99999999985
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-42 Score=363.46 Aligned_cols=198 Identities=30% Similarity=0.535 Sum_probs=169.3
Q ss_pred EEEeEEEECCCCCCcccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCccCCCCCHHHHhcceEE
Q 001411 836 ELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRKIGL 915 (1082)
Q Consensus 836 ~~~~Vs~~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR~~i~~ 915 (1082)
+++||+++|+ +.++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++. .+|++++|
T Consensus 1 ~~~~l~~~~~---~~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~-----~~~~~i~~ 72 (213)
T cd03235 1 EVEDLTVSYG---GHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLE-----KERKRIGY 72 (213)
T ss_pred CcccceeEEC---CEEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCccHH-----HHHhheEE
Confidence 3689999996 346999999999999999999999999999999999999999999999998764 47889999
Q ss_pred EcccCcc---ccccHHHHhccCCCC----------CCHHHHHHHHHHhcHHHHHhhCcccccccccCCCCCCChhHHHHH
Q 001411 916 VQQEPAL---FSTTIYENIKYGNED----------ASEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRV 982 (1082)
Q Consensus 916 VpQdp~L---f~gTIreNl~~~~~~----------~~d~ei~~al~~a~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrl 982 (1082)
+||+|.+ |+.|++||+.++... ..++++.++++..++.++..+ ...+||||||||+
T Consensus 73 v~q~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LSgG~~qrv 141 (213)
T cd03235 73 VPQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADR-----------QIGELSGGQQQRV 141 (213)
T ss_pred eccccccccCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHhC-----------CcccCCHHHHHHH
Confidence 9999986 568999999864321 112346666777666554432 3357999999999
Q ss_pred HHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEecCchhhhc-cCEEEEEeCCEEEEec
Q 001411 983 AIARAILKNPSILLLDEATSALDTASENLIQEALDKLM-EGRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIG 1053 (1082)
Q Consensus 983 aLARAlL~~~~ILlLDEaTS~LD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~G 1053 (1082)
+|||||+++|++|||||||++||+.+.+.+.+.|++.. +++|+|+|||+++.+.. ||+|++|++| +++.|
T Consensus 142 ~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~~-~~~~g 213 (213)
T cd03235 142 LLARALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRREGMTILVVTHDLGLVLEYFDRVLLLNRT-VVASG 213 (213)
T ss_pred HHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEcCc-EeecC
Confidence 99999999999999999999999999999999999875 57899999999999965 9999999986 55554
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. |
| >cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-41 Score=364.65 Aligned_cols=207 Identities=33% Similarity=0.514 Sum_probs=171.1
Q ss_pred EEEEEEEEECCCCC--CccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHHhCCCCCCcEEEECCeeCCCCCHH----HH
Q 001411 206 IEFSEVCFAYPSRP--HMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLK----WL 279 (1082)
Q Consensus 206 i~~~~v~~~y~~~~--~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~----~~ 279 (1082)
++++|++++|++.. .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+.. ..
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~ 80 (218)
T cd03255 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFR 80 (218)
T ss_pred CeEeeeEEEecCCCcceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHHHHHH
Confidence 46899999997521 3599999999999999999999999999999999999999999999999998776543 24
Q ss_pred hhhceEEccCCCcChh-cHHHHHhcCCCCC--CHHHHHHHHHHhchHHHHhcCCCCccccccCCCCCCChHHHHHHHHHH
Q 001411 280 REQMGLVSQEPALFAT-SIANNILLGKEDA--SMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIAR 356 (1082)
Q Consensus 280 ~~~i~~v~Q~~~l~~~-ti~~ni~~g~~~~--~~~~~~~~~~~~~~~~~i~~lp~g~~t~~g~~g~~LSgGqkqri~lAR 356 (1082)
++.++|++|++.+|+. |++||+.++.... ...+.. ..+.+.++.+ |++........+||||||||++|||
T Consensus 81 ~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~la~ 153 (218)
T cd03255 81 RRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKERR-----ERAEELLERV--GLGDRLNHYPSELSGGQQQRVAIAR 153 (218)
T ss_pred hhcEEEEeeccccCCCCcHHHHHHHHHhhcCCCHHHHH-----HHHHHHHHHc--CCchhhhcChhhcCHHHHHHHHHHH
Confidence 5689999999999886 9999998864321 111111 1112233333 4444455566789999999999999
Q ss_pred hcccCCCeeEEeCcccCCCHHHHHHHHHHHHHHcC--CCeEEEEccCccccccCCEEEEEeCCEE
Q 001411 357 AVLRNPKILLLDEATSALDAESELIVQRALEKIMS--NRTTIVVAHRLSTVRDVDTIMVLKNGQV 419 (1082)
Q Consensus 357 al~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~vtH~~~~~~~~d~i~~l~~G~i 419 (1082)
||+.+|+++||||||++||+.+.+.+.+.|.++.+ ++|+|++||+++.+..||++++|++|++
T Consensus 154 al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~d~v~~l~~G~i 218 (218)
T cd03255 154 ALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPELAEYADRIIELRDGKI 218 (218)
T ss_pred HHccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhcEEEEeeCCcC
Confidence 99999999999999999999999999999998854 7899999999998888999999999974
|
They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. |
| >PRK14263 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-41 Score=368.90 Aligned_cols=224 Identities=29% Similarity=0.435 Sum_probs=191.4
Q ss_pred cEEEEeEEEECCCCCCcccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccC-----CccEEEECCccCCCC--CH
Q 001411 834 NIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDP-----ISGTVLIDGYDIRTL--NL 906 (1082)
Q Consensus 834 ~I~~~~Vs~~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p-----~~G~I~idG~di~~i--~~ 906 (1082)
.+.+++++++|. +.++|+|+||+|+|||++||+|+||||||||+++|.|+++| ++|+|.+||.++... +.
T Consensus 8 ~~~~~~~~~~~~---~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~ 84 (261)
T PRK14263 8 VMDCKLDKIFYG---NFMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDP 84 (261)
T ss_pred eEEEEeEEEEeC---CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccccccch
Confidence 388999999995 34799999999999999999999999999999999999987 799999999998643 44
Q ss_pred HHHhcceEEEcccCccccccHHHHhccCCC-----CCCHHHHHHHHHHhcHHHHHhhCcccccccccCCCCCCChhHHHH
Q 001411 907 RSLRRKIGLVQQEPALFSTTIYENIKYGNE-----DASEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQR 981 (1082)
Q Consensus 907 ~~lR~~i~~VpQdp~Lf~gTIreNl~~~~~-----~~~d~ei~~al~~a~l~~~i~~lp~gldt~v~e~G~~LSgGQrQr 981 (1082)
..+|++++|+||+|.+|..|+++|+.++.. ....+++.++++.+++.+.+.. ..++...+||||||||
T Consensus 85 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~-------~~~~~~~~LS~G~~qr 157 (261)
T PRK14263 85 VVVRRYIGMVFQQPNPFSMSIFDNVAFGLRLNRYKGDLGDRVKHALQGAALWDEVKD-------KLKVSGLSLSGGQQQR 157 (261)
T ss_pred HhhhhceEEEecCCccccccHHHHHHHHHhhcCchHHHHHHHHHHHHHcCCchhhhh-------hhhCCcccCCHHHHHH
Confidence 567889999999999999999999987521 1123456777777776554432 2345667899999999
Q ss_pred HHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhc-cCEEEEEe--------CCEEEEe
Q 001411 982 VAIARAILKNPSILLLDEATSALDTASENLIQEALDKLMEGRTTIMVAHRLSTIRN-ADKIAVLQ--------QGKVAEI 1052 (1082)
Q Consensus 982 laLARAlL~~~~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~-~DrI~Vl~--------~G~ive~ 1052 (1082)
++||||++++|+||||||||++||+.+.+.+.+.|++..+++|+|+|||+++.+.. ||||++|+ +|++++.
T Consensus 158 v~laral~~~p~llllDEPtsgLD~~~~~~l~~~l~~~~~~~tii~isH~~~~i~~~~d~v~~l~~~~~~~~~~G~i~~~ 237 (261)
T PRK14263 158 LCIARAIATEPEVLLLDEPCSALDPIATRRVEELMVELKKDYTIALVTHNMQQAIRVADTTAFFSVDISQGTRTGYLVEM 237 (261)
T ss_pred HHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEecccccccCCceEEEe
Confidence 99999999999999999999999999999999999998777899999999999865 99999996 8999999
Q ss_pred cChHHHhhhccchHH
Q 001411 1053 GSHEQLLRKENGIYK 1067 (1082)
Q Consensus 1053 G~~~eLl~~~~g~f~ 1067 (1082)
|+++++++++...+.
T Consensus 238 g~~~~~~~~~~~~~~ 252 (261)
T PRK14263 238 GPTAQIFQNPREQLT 252 (261)
T ss_pred CCHHHHHhCCCcHHH
Confidence 999999864443343
|
|
| >PRK14258 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-41 Score=370.48 Aligned_cols=222 Identities=29% Similarity=0.503 Sum_probs=188.6
Q ss_pred ccEEEEeEEEECCCCCCcccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCC-----ccEEEECCccCCC--CC
Q 001411 833 GNIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPI-----SGTVLIDGYDIRT--LN 905 (1082)
Q Consensus 833 g~I~~~~Vs~~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~-----~G~I~idG~di~~--i~ 905 (1082)
+.|+++||+++|+ +.++|+|+||+|++||.+||+|+||||||||+++|.|+++|+ +|+|.+||.++.. .+
T Consensus 6 ~~l~~~nl~~~~~---~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~~~ 82 (261)
T PRK14258 6 PAIKVNNLSFYYD---TQKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRVN 82 (261)
T ss_pred ceEEEeeEEEEeC---CeeEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhccccc
Confidence 3699999999996 236999999999999999999999999999999999999985 8999999999853 34
Q ss_pred HHHHhcceEEEcccCccccccHHHHhccCC------CCCC-HHHHHHHHHHhcHHHHHhhCcccccccccCCCCCCChhH
Q 001411 906 LRSLRRKIGLVQQEPALFSTTIYENIKYGN------EDAS-EIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQ 978 (1082)
Q Consensus 906 ~~~lR~~i~~VpQdp~Lf~gTIreNl~~~~------~~~~-d~ei~~al~~a~l~~~i~~lp~gldt~v~e~G~~LSgGQ 978 (1082)
...+|+.++|+||++.+|+.|++||+.++. +... ++.+.++++.+++.+++.. ..+..+..|||||
T Consensus 83 ~~~~~~~i~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LSgGq 155 (261)
T PRK14258 83 LNRLRRQVSMVHPKPNLFPMSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWDEIKH-------KIHKSALDLSGGQ 155 (261)
T ss_pred hHHhhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchhhh-------HhcCCcccCCHHH
Confidence 567889999999999999999999997642 1111 2345566667766544432 2344567899999
Q ss_pred HHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHhc--CCceEEEEecCchhhhc-cCEEEEEeC-----CEEE
Q 001411 979 KQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLM--EGRTTIMVAHRLSTIRN-ADKIAVLQQ-----GKVA 1050 (1082)
Q Consensus 979 rQrlaLARAlL~~~~ILlLDEaTS~LD~~te~~I~~~l~~~~--~~~TvI~IaHrl~ti~~-~DrI~Vl~~-----G~iv 1050 (1082)
|||++|||||+++|++|||||||++||+++.+.+.+.|++.. .++|+|+|||+++.+.. ||+|++|++ |+++
T Consensus 156 ~qrv~laral~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~~~i~~~~d~i~~l~~~~~~~G~i~ 235 (261)
T PRK14258 156 QQRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLHQVSRLSDFTAFFKGNENRIGQLV 235 (261)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhcCEEEEEccCCCcCceEE
Confidence 999999999999999999999999999999999999999853 48999999999999865 999999999 9999
Q ss_pred EecChHHHhhhccc
Q 001411 1051 EIGSHEQLLRKENG 1064 (1082)
Q Consensus 1051 e~G~~~eLl~~~~g 1064 (1082)
+.|+|+++.+.+..
T Consensus 236 ~~~~~~~~~~~~~~ 249 (261)
T PRK14258 236 EFGLTKKIFNSPHD 249 (261)
T ss_pred EeCCHHHHHhCCCC
Confidence 99999999865443
|
|
| >TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-41 Score=378.72 Aligned_cols=213 Identities=29% Similarity=0.473 Sum_probs=180.7
Q ss_pred cEEEEeEEEECCCCCCcccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCccCCCCCHHHHhcce
Q 001411 834 NIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRKI 913 (1082)
Q Consensus 834 ~I~~~~Vs~~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR~~i 913 (1082)
.|+++||+++|+ +.++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.++|.++... ...+|+++
T Consensus 4 ~i~~~~l~~~~~---~~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~-~~~~~~~i 79 (303)
T TIGR01288 4 AIDLVGVSKSYG---DKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSR-ARLARVAI 79 (303)
T ss_pred EEEEEeEEEEeC---CeEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccc-HHHHhhcE
Confidence 489999999996 34699999999999999999999999999999999999999999999999998754 35678999
Q ss_pred EEEcccCcccc-ccHHHHhccCCC--CCCHHHH----HHHHHHhcHHHHHhhCcccccccccCCCCCCChhHHHHHHHHH
Q 001411 914 GLVQQEPALFS-TTIYENIKYGNE--DASEIEL----MKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIAR 986 (1082)
Q Consensus 914 ~~VpQdp~Lf~-gTIreNl~~~~~--~~~d~ei----~~al~~a~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlaLAR 986 (1082)
+|+||++.+|. .|+++|+.+... ..+..+. .++++..++ ++.+++.+ ..||||||||++|||
T Consensus 80 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l-------~~~~~~~~----~~LSgG~~qrv~la~ 148 (303)
T TIGR01288 80 GVVPQFDNLDPEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARL-------ESKADVRV----ALLSGGMKRRLTLAR 148 (303)
T ss_pred EEEeccccCCcCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCC-------hhHhcCch----hhCCHHHHHHHHHHH
Confidence 99999999885 699999974211 1233332 233333333 22334443 569999999999999
Q ss_pred HHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEecCchhhhc-cCEEEEEeCCEEEEecChHHHhhh
Q 001411 987 AILKNPSILLLDEATSALDTASENLIQEALDKLM-EGRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGSHEQLLRK 1061 (1082)
Q Consensus 987 AlL~~~~ILlLDEaTS~LD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~G~~~eLl~~ 1061 (1082)
||+++|++|||||||++||+.+.+.+.+.|++.. +++|+|++||+++.+.. ||+|++|++|++++.|+++++.+.
T Consensus 149 al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~til~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 225 (303)
T TIGR01288 149 ALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLESGRKIAEGRPHALIDE 225 (303)
T ss_pred HHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhh
Confidence 9999999999999999999999999999999874 47899999999999965 999999999999999999999753
|
This model does not recognize the highly divergent NodI from Azorhizobium caulinodans. |
| >PRK14275 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-41 Score=374.41 Aligned_cols=226 Identities=30% Similarity=0.481 Sum_probs=187.6
Q ss_pred ccEEEEeEEEECCCCCCcccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccc-----CCccEEEECCccCCCC--C
Q 001411 833 GNIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYD-----PISGTVLIDGYDIRTL--N 905 (1082)
Q Consensus 833 g~I~~~~Vs~~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~-----p~~G~I~idG~di~~i--~ 905 (1082)
..|+++||+++|+ +.++|+|+||+|++||++||+|+||||||||+++|.|+.+ |++|+|.+||.++... +
T Consensus 38 ~~l~~~~l~~~~~---~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~~~ 114 (286)
T PRK14275 38 PHVVAKNFSIYYG---EFEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTD 114 (286)
T ss_pred eEEEEeeeEEEEC---CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhcccc
Confidence 3589999999996 3469999999999999999999999999999999999865 4999999999998643 3
Q ss_pred HHHHhcceEEEcccCccccccHHHHhccCCC--CC-C----HHHHHHHHHHhcHHHHHhhCcccccccccCCCCCCChhH
Q 001411 906 LRSLRRKIGLVQQEPALFSTTIYENIKYGNE--DA-S----EIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQ 978 (1082)
Q Consensus 906 ~~~lR~~i~~VpQdp~Lf~gTIreNl~~~~~--~~-~----d~ei~~al~~a~l~~~i~~lp~gldt~v~e~G~~LSgGQ 978 (1082)
...+|++++||||+|.+|+.|++||+.++.. .. + ++.+.++++..++.+.+. .........|||||
T Consensus 115 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~~~~~LSgGq 187 (286)
T PRK14275 115 EVLLRKKIGMVFQKPNPFPKSIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEVS-------DRLDKNALGLSGGQ 187 (286)
T ss_pred hHHhhhcEEEECCCCCCCccCHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHhCCccchh-------hHhhCChhhCCHHH
Confidence 3467899999999999999999999986421 11 1 223445555555432221 12234456799999
Q ss_pred HHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhc-cCEEEEEeCCEEEEecChHH
Q 001411 979 KQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLMEGRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGSHEQ 1057 (1082)
Q Consensus 979 rQrlaLARAlL~~~~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~G~~~e 1057 (1082)
|||++|||||+++|++|||||||++||+++.+.+.+.|++..+++|||++||+++.+.. ||+|++|++|++++.|++++
T Consensus 188 ~qrv~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tvIivsH~~~~~~~~~d~i~~L~~G~i~~~g~~~~ 267 (286)
T PRK14275 188 QQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRGSYTIMIVTHNMQQASRVSDYTMFFYEGVLVEHAPTAQ 267 (286)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999999987667899999999999865 99999999999999999999
Q ss_pred HhhhccchHHH
Q 001411 1058 LLRKENGIYKQ 1068 (1082)
Q Consensus 1058 Ll~~~~g~f~~ 1068 (1082)
+.+++...|.+
T Consensus 268 ~~~~~~~~~~~ 278 (286)
T PRK14275 268 LFTNPKDRMTE 278 (286)
T ss_pred HHhCCCcHHHH
Confidence 98754444433
|
|
| >PRK14253 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-41 Score=367.58 Aligned_cols=219 Identities=31% Similarity=0.546 Sum_probs=186.7
Q ss_pred cEEEEeEEEECCCCCCcccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccC-----CccEEEECCccCC-CCCHH
Q 001411 834 NIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDP-----ISGTVLIDGYDIR-TLNLR 907 (1082)
Q Consensus 834 ~I~~~~Vs~~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p-----~~G~I~idG~di~-~i~~~ 907 (1082)
.++++|++++|+ +.++|+|+||+|++||.+||+|+||||||||+++|.|+++| ++|+|.+||.++. ..+..
T Consensus 3 ~l~~~~l~~~~~---~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~ 79 (249)
T PRK14253 3 KFNIENLDLFYG---ENQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVA 79 (249)
T ss_pred eEEEeccEEEEC---CeeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccchH
Confidence 489999999996 34699999999999999999999999999999999999986 5999999999986 45667
Q ss_pred HHhcceEEEcccCccccccHHHHhccCCC--CC-C----HHHHHHHHHHhcHHHHHhhCcccccccccCCCCCCChhHHH
Q 001411 908 SLRRKIGLVQQEPALFSTTIYENIKYGNE--DA-S----EIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQ 980 (1082)
Q Consensus 908 ~lR~~i~~VpQdp~Lf~gTIreNl~~~~~--~~-~----d~ei~~al~~a~l~~~i~~lp~gldt~v~e~G~~LSgGQrQ 980 (1082)
.+|+.++|+||+|.+|+.|+++|+.++.. .. . ++++.++++.+++.+.+. .........|||||||
T Consensus 80 ~~~~~i~~~~q~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~~~~~~~~LS~G~~q 152 (249)
T PRK14253 80 DLRIKVGMVFQKPNPFPMSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDEVK-------DRLKSHAFGLSGGQQQ 152 (249)
T ss_pred HHHhheeEEecCCCcCcccHHHHHHhHHHhcCCCchHHHHHHHHHHHHHcCCchhhh-------HHhhcCcccCCHHHHH
Confidence 88999999999999999999999986421 11 1 123444555555543322 2234445679999999
Q ss_pred HHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhc-cCEEEEEeCCEEEEecChHHHh
Q 001411 981 RVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLMEGRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGSHEQLL 1059 (1082)
Q Consensus 981 rlaLARAlL~~~~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~G~~~eLl 1059 (1082)
|++|||||+.+|+||||||||++||+.+.+.+.+.|++..+++|+|+|||+++.+.. ||+|++|++|++++.|+++++.
T Consensus 153 rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 232 (249)
T PRK14253 153 RLCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKKNYTIVIVTHSMQQARRISDRTAFFLMGELVEHDDTQVIF 232 (249)
T ss_pred HHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999999999999999999998767899999999999876 9999999999999999999987
Q ss_pred hhc
Q 001411 1060 RKE 1062 (1082)
Q Consensus 1060 ~~~ 1062 (1082)
.++
T Consensus 233 ~~~ 235 (249)
T PRK14253 233 SNP 235 (249)
T ss_pred cCC
Confidence 543
|
|
| >cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-41 Score=365.73 Aligned_cols=214 Identities=36% Similarity=0.566 Sum_probs=180.0
Q ss_pred EEEEEEEEECCCCC--CccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHHhCCCCCCcEEEECCeeCCCCCHH---HHh
Q 001411 206 IEFSEVCFAYPSRP--HMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLK---WLR 280 (1082)
Q Consensus 206 i~~~~v~~~y~~~~--~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~---~~~ 280 (1082)
|+++|++++|+++. .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+.. ..+
T Consensus 2 i~~~~l~~~~~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (233)
T cd03258 2 IELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRKAR 81 (233)
T ss_pred eEEecceEEccCCCCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHH
Confidence 68999999997531 1599999999999999999999999999999999999999999999999998776543 347
Q ss_pred hhceEEccCCCcCh-hcHHHHHhcCCCC--CCH----HHHHHHHHHhchHHHHhcCCCCccccccCCCCCCChHHHHHHH
Q 001411 281 EQMGLVSQEPALFA-TSIANNILLGKED--ASM----DRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIA 353 (1082)
Q Consensus 281 ~~i~~v~Q~~~l~~-~ti~~ni~~g~~~--~~~----~~~~~~~~~~~~~~~i~~lp~g~~t~~g~~g~~LSgGqkqri~ 353 (1082)
+.++|++|++.+|+ .|++||+.++... .+. +++.+.++.. |++........+||||||||++
T Consensus 82 ~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~~~LS~G~~qrv~ 150 (233)
T cd03258 82 RRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIEERVLELLELV-----------GLEDKADAYPAQLSGGQKQRVG 150 (233)
T ss_pred hheEEEccCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHC-----------CChhhhhcChhhCCHHHHHHHH
Confidence 78999999999997 5999999875321 111 2233333333 3444444555789999999999
Q ss_pred HHHhcccCCCeeEEeCcccCCCHHHHHHHHHHHHHHcC--CCeEEEEccCcccccc-CCEEEEEeCCEEEEecCchhhhh
Q 001411 354 IARAVLRNPKILLLDEATSALDAESELIVQRALEKIMS--NRTTIVVAHRLSTVRD-VDTIMVLKNGQVVESGTHVDLIS 430 (1082)
Q Consensus 354 lARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~ 430 (1082)
||||++.+|+++||||||++||+.+.+.+.+.|.++.+ ++|+|++||+++.+.. ||++++|++|++++.|+++++.+
T Consensus 151 la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 230 (233)
T cd03258 151 IARALANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEMEVVKRICDRVAVMEKGEVVEEGTVEEVFA 230 (233)
T ss_pred HHHHHhcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHhc
Confidence 99999999999999999999999999999999998743 7899999999999865 89999999999999998887754
|
Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-41 Score=387.40 Aligned_cols=212 Identities=31% Similarity=0.501 Sum_probs=181.2
Q ss_pred cEEEEEEEEECCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHHhCCCCCCcEEEECCeeCCCCCHHHHhhhce
Q 001411 205 QIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMG 284 (1082)
Q Consensus 205 ~i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 284 (1082)
.++++|++++|++ ..+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++...++. ++.|+
T Consensus 3 ~l~i~~l~~~~~~--~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~~~~~--~~~i~ 78 (369)
T PRK11000 3 SVTLRNVTKAYGD--VVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPA--ERGVG 78 (369)
T ss_pred EEEEEEEEEEeCC--eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHh--HCCEE
Confidence 4899999999974 3499999999999999999999999999999999999999999999999999766543 46799
Q ss_pred EEccCCCcChh-cHHHHHhcCCCC--CCH----HHHHHHHHHhchHHHHhcCCCCccccccCCCCCCChHHHHHHHHHHh
Q 001411 285 LVSQEPALFAT-SIANNILLGKED--ASM----DRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARA 357 (1082)
Q Consensus 285 ~v~Q~~~l~~~-ti~~ni~~g~~~--~~~----~~~~~~~~~~~~~~~i~~lp~g~~t~~g~~g~~LSgGqkqri~lARa 357 (1082)
||+|++.+|+. |++|||.++... ... +++.++++..++.+ .......+|||||||||+||||
T Consensus 79 ~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~lgL~~-----------~~~~~~~~LSgGq~QRvaLAra 147 (369)
T PRK11000 79 MVFQSYALYPHLSVAENMSFGLKLAGAKKEEINQRVNQVAEVLQLAH-----------LLDRKPKALSGGQRQRVAIGRT 147 (369)
T ss_pred EEeCCcccCCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChh-----------hhcCChhhCCHHHHHHHHHHHH
Confidence 99999999976 999999987431 111 23444455444433 3344456899999999999999
Q ss_pred cccCCCeeEEeCcccCCCHHHHHHHHHHHHHHcC--CCeEEEEccCccccc-cCCEEEEEeCCEEEEecCchhhhhc
Q 001411 358 VLRNPKILLLDEATSALDAESELIVQRALEKIMS--NRTTIVVAHRLSTVR-DVDTIMVLKNGQVVESGTHVDLISK 431 (1082)
Q Consensus 358 l~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~vtH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~~ 431 (1082)
|+.+|++||||||||+||+.+++.+.+.|+++.+ +.|+|+|||+++.+. .||+|++|++|++++.|+++++...
T Consensus 148 L~~~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~~~~~~~d~i~vl~~G~i~~~g~~~~i~~~ 224 (369)
T PRK11000 148 LVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHY 224 (369)
T ss_pred HhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 9999999999999999999999999999988743 789999999999875 5899999999999999999988654
|
|
| >PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-41 Score=373.88 Aligned_cols=213 Identities=35% Similarity=0.567 Sum_probs=181.9
Q ss_pred EEEEeEEEECCCCCCcccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCccCCC--CCHHHHhcc
Q 001411 835 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRT--LNLRSLRRK 912 (1082)
Q Consensus 835 I~~~~Vs~~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~--i~~~~lR~~ 912 (1082)
|+++||+++|+. ..++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.+++. .+...+|++
T Consensus 2 l~~~~l~~~~~~--~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (275)
T PRK13639 2 LETRDLKYSYPD--GTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLEVRKT 79 (275)
T ss_pred EEEEEEEEEeCC--CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEECccccchHHHHHhh
Confidence 789999999962 3469999999999999999999999999999999999999999999999999853 334568899
Q ss_pred eEEEcccC--ccccccHHHHhccCCC--CCCH----HHHHHHHHHhcHHHHHhhCcccccccccCCCCCCChhHHHHHHH
Q 001411 913 IGLVQQEP--ALFSTTIYENIKYGNE--DASE----IELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAI 984 (1082)
Q Consensus 913 i~~VpQdp--~Lf~gTIreNl~~~~~--~~~d----~ei~~al~~a~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlaL 984 (1082)
|+|+||+| .+|+.|+++|+.++.. ..+. +.+.++++..++.++. + .....||||||||++|
T Consensus 80 i~~v~q~~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~-------~----~~~~~LS~Gq~qrv~l 148 (275)
T PRK13639 80 VGIVFQNPDDQLFAPTVEEDVAFGPLNLGLSKEEVEKRVKEALKAVGMEGFE-------N----KPPHHLSGGQKKRVAI 148 (275)
T ss_pred eEEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchhh-------c----CChhhCCHHHHHHHHH
Confidence 99999998 4788999999976421 1222 2344555555554332 2 2345799999999999
Q ss_pred HHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEecCchhhhc-cCEEEEEeCCEEEEecChHHHhh
Q 001411 985 ARAILKNPSILLLDEATSALDTASENLIQEALDKLM-EGRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGSHEQLLR 1060 (1082)
Q Consensus 985 ARAlL~~~~ILlLDEaTS~LD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~G~~~eLl~ 1060 (1082)
|||++++|++|||||||++||+.+...+.+.|++.. +++|||+|||+++.+.. ||+|++|++|++++.|+++++++
T Consensus 149 aral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~~til~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 226 (275)
T PRK13639 149 AGILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDVDLVPVYADKVYVMSDGKIIKEGTPKEVFS 226 (275)
T ss_pred HHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 999999999999999999999999999999999875 47899999999999875 99999999999999999999875
|
|
| >cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-41 Score=363.63 Aligned_cols=216 Identities=26% Similarity=0.446 Sum_probs=178.3
Q ss_pred EEEEEEEEECCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHHhCCCCCCcEEEECCeeCCCCCHHHH-hhhce
Q 001411 206 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWL-REQMG 284 (1082)
Q Consensus 206 i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~-~~~i~ 284 (1082)
|+++|++++|++. ++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+.... ++.++
T Consensus 1 l~~~~l~~~~~~~--~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~ 78 (222)
T cd03224 1 LEVENLNAGYGKS--QILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARAGIG 78 (222)
T ss_pred CEEeeEEeecCCe--eEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCCCCHHHHHhcCeE
Confidence 4789999999753 49999999999999999999999999999999999999999999999999887766544 56799
Q ss_pred EEccCCCcChh-cHHHHHhcCCCCCCHHHHHHHHHHhchHHHHhcCCCCccccccCCCCCCChHHHHHHHHHHhcccCCC
Q 001411 285 LVSQEPALFAT-SIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPK 363 (1082)
Q Consensus 285 ~v~Q~~~l~~~-ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~lp~g~~t~~g~~g~~LSgGqkqri~lARal~~~~~ 363 (1082)
|++|++.+|+. |++||+.++.......+..+ +...+.+.+.. ++........+||||||||++|||||+.+|+
T Consensus 79 ~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~--~~~~~l~~~~~----l~~~~~~~~~~LS~G~~qrv~laral~~~p~ 152 (222)
T cd03224 79 YVPEGRRIFPELTVEENLLLGAYARRRAKRKA--RLERVYELFPR----LKERRKQLAGTLSGGEQQMLAIARALMSRPK 152 (222)
T ss_pred EeccccccCCCCcHHHHHHHHhhhcCchhHHH--HHHHHHHHHHh----hhhhhhCchhhCCHHHHHHHHHHHHHhcCCC
Confidence 99999999887 99999988643221111111 11111122211 2233445667899999999999999999999
Q ss_pred eeEEeCcccCCCHHHHHHHHHHHHHHc-CCCeEEEEccCcccccc-CCEEEEEeCCEEEEecCchhhh
Q 001411 364 ILLLDEATSALDAESELIVQRALEKIM-SNRTTIVVAHRLSTVRD-VDTIMVLKNGQVVESGTHVDLI 429 (1082)
Q Consensus 364 illlDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~ 429 (1082)
++||||||++||+.+...+.+.|+++. +++|+|++||+++.+.. ||+|++|++|++++.|+++++.
T Consensus 153 llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 220 (222)
T cd03224 153 LLLLDEPSEGLAPKIVEEIFEAIRELRDEGVTILLVEQNARFALEIADRAYVLERGRVVLEGTAAELL 220 (222)
T ss_pred EEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhccEEEEeeCCeEEEeCCHHHHh
Confidence 999999999999999999999998875 47899999999998755 8999999999999999887764
|
The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. |
| >cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-41 Score=360.30 Aligned_cols=199 Identities=31% Similarity=0.532 Sum_probs=169.5
Q ss_pred EEEEEEEECCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHHhCCCCCCcEEEECCeeCCCCCHHHHhhhceEE
Q 001411 207 EFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGLV 286 (1082)
Q Consensus 207 ~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v 286 (1082)
+++|++++|++. .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..+++.++|+
T Consensus 1 ~~~~l~~~~~~~-~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~---~~~~~~i~~~ 76 (205)
T cd03226 1 RIENISFSYKKG-TEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKA---KERRKSIGYV 76 (205)
T ss_pred CcccEEEEeCCc-CceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhh---HHhhcceEEE
Confidence 367999999752 349999999999999999999999999999999999999999999999998753 4567789999
Q ss_pred ccCC--CcChhcHHHHHhcCCCCC--CHHHHHHHHHHhchHHHHhcCCCCccccccCCCCCCChHHHHHHHHHHhcccCC
Q 001411 287 SQEP--ALFATSIANNILLGKEDA--SMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNP 362 (1082)
Q Consensus 287 ~Q~~--~l~~~ti~~ni~~g~~~~--~~~~~~~~~~~~~~~~~i~~lp~g~~t~~g~~g~~LSgGqkqri~lARal~~~~ 362 (1082)
+|++ .+++.|++||+.++.+.. ..+++.++++..++.++.++ ....||||||||++|||||+.+|
T Consensus 77 ~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrv~laral~~~p 145 (205)
T cd03226 77 MQDVDYQLFTDSVREELLLGLKELDAGNEQAETVLKDLDLYALKER-----------HPLSLSGGQKQRLAIAAALLSGK 145 (205)
T ss_pred ecChhhhhhhccHHHHHhhhhhhcCccHHHHHHHHHHcCCchhcCC-----------CchhCCHHHHHHHHHHHHHHhCC
Confidence 9998 467789999998864322 22455666666655444333 33589999999999999999999
Q ss_pred CeeEEeCcccCCCHHHHHHHHHHHHHH-cCCCeEEEEccCcccccc-CCEEEEEeCCEEE
Q 001411 363 KILLLDEATSALDAESELIVQRALEKI-MSNRTTIVVAHRLSTVRD-VDTIMVLKNGQVV 420 (1082)
Q Consensus 363 ~illlDEpts~LD~~~~~~i~~~l~~~-~~~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~ 420 (1082)
+++||||||++||+.+.+.+.+.|+++ .+++|+|++||+++.+.. ||++++|++|+++
T Consensus 146 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~iv 205 (205)
T cd03226 146 DLLIFDEPTSGLDYKNMERVGELIRELAAQGKAVIVITHDYEFLAKVCDRVLLLANGAIV 205 (205)
T ss_pred CEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEC
Confidence 999999999999999999999999987 457899999999999864 8999999999874
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >cd03291 ABCC_CFTR1 The CFTR subfamily domain 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-40 Score=365.33 Aligned_cols=219 Identities=30% Similarity=0.499 Sum_probs=193.1
Q ss_pred CCCcEEEEEEEEECCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHHhCCCCCCcEEEECCeeCCCCCHHHHhh
Q 001411 202 LAGQIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLRE 281 (1082)
Q Consensus 202 ~~~~i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~ 281 (1082)
..+.|+++|+++.. .++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|
T Consensus 36 ~~~~l~i~nls~~~----~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~p~~G~I~i~g------------- 98 (282)
T cd03291 36 DDNNLFFSNLCLVG----APVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSG------------- 98 (282)
T ss_pred CCCeEEEEEEEEec----ccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECC-------------
Confidence 34579999999962 3499999999999999999999999999999999999999999999998
Q ss_pred hceEEccCCCcChhcHHHHHhcCCCCCCHHHHHHHHHHhchHHHHhcCCCCccccccCCCCCCChHHHHHHHHHHhcccC
Q 001411 282 QMGLVSQEPALFATSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRN 361 (1082)
Q Consensus 282 ~i~~v~Q~~~l~~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~lp~g~~t~~g~~g~~LSgGqkqri~lARal~~~ 361 (1082)
.|+|++|++++++.|++||+.++... ...++.++++..++.+.+..+|.++++.+++.+..||||||||++|||||+.+
T Consensus 99 ~i~yv~q~~~l~~~tv~enl~~~~~~-~~~~~~~~l~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~qrv~lAraL~~~ 177 (282)
T cd03291 99 RISFSSQFSWIMPGTIKENIIFGVSY-DEYRYKSVVKACQLEEDITKFPEKDNTVLGEGGITLSGGQRARISLARAVYKD 177 (282)
T ss_pred EEEEEeCcccccccCHHHHhhccccc-CHHHHHHHHHHhCCHHHHHhccccccceecCCCCcCCHHHHHHHHHHHHHhcC
Confidence 39999999999999999999986432 23445566777788888999999999999999999999999999999999999
Q ss_pred CCeeEEeCcccCCCHHHHHHHHHHH-HHHcCCCeEEEEccCccccccCCEEEEEeCCEEEEecCchhhhhcCchhHHH
Q 001411 362 PKILLLDEATSALDAESELIVQRAL-EKIMSNRTTIVVAHRLSTVRDVDTIMVLKNGQVVESGTHVDLISKGGEYAAL 438 (1082)
Q Consensus 362 ~~illlDEpts~LD~~~~~~i~~~l-~~~~~~~t~i~vtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~ 438 (1082)
|++|||||||++||+.+...+.+.+ ..+.+++|+|++||+++.+..||++++|++|++++.|+++++......|...
T Consensus 178 p~iLiLDEPt~gLD~~~~~~l~~~ll~~~~~~~tIiiisH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~~~~~~~ 255 (282)
T cd03291 178 ADLYLLDSPFGYLDVFTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQSLRPDFSSK 255 (282)
T ss_pred CCEEEEECCCccCCHHHHHHHHHHHHHHhhCCCEEEEEeCChHHHHhCCEEEEEECCEEEEECCHHHHHhcchHHHHH
Confidence 9999999999999999999888754 5555678999999999999889999999999999999999987654445433
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >cd03290 ABCC_SUR1_N The SUR domain 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-41 Score=359.41 Aligned_cols=210 Identities=29% Similarity=0.501 Sum_probs=186.7
Q ss_pred EEEeEEEECCCCCCcccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCccCCCCCH----HHHhc
Q 001411 836 ELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNL----RSLRR 911 (1082)
Q Consensus 836 ~~~~Vs~~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~----~~lR~ 911 (1082)
.+.|+.|+|+. +.++++|+||+|++||.++|+|+||||||||+++|.|+++|++|+|.+||.++...+. ...|+
T Consensus 2 ~~~~~~~~~~~--~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 79 (218)
T cd03290 2 QVTNGYFSWGS--GLATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSRNRY 79 (218)
T ss_pred eeeeeEEecCC--CCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCcccccccccccchhhcc
Confidence 57899999973 3579999999999999999999999999999999999999999999999998876542 34577
Q ss_pred ceEEEcccCccccccHHHHhccCCCCCCHHHHHHHHHHhcHHHHHhhCcccccccccCCCCCCChhHHHHHHHHHHHccC
Q 001411 912 KIGLVQQEPALFSTTIYENIKYGNEDASEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKN 991 (1082)
Q Consensus 912 ~i~~VpQdp~Lf~gTIreNl~~~~~~~~d~ei~~al~~a~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlaLARAlL~~ 991 (1082)
.++|++|+|.+|+.|+++|+.++.+ .++++..++++..++.+.+..+|.|+++.++....+||||||||++||||++++
T Consensus 80 ~i~~~~q~~~~~~~t~~~nl~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qrv~laral~~~ 158 (218)
T cd03290 80 SVAYAAQKPWLLNATVEENITFGSP-FNKQRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRICVARALYQN 158 (218)
T ss_pred eEEEEcCCCccccccHHHHHhhcCc-CCHHHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHHHHHHHHHHHhhC
Confidence 8999999999999999999987543 345667788889999888999999999999988899999999999999999999
Q ss_pred CCEEEeeCCCCCCCHHHHHHHHH--HHHHhc-CCceEEEEecCchhhhccCEEEEEeCCE
Q 001411 992 PSILLLDEATSALDTASENLIQE--ALDKLM-EGRTTIMVAHRLSTIRNADKIAVLQQGK 1048 (1082)
Q Consensus 992 ~~ILlLDEaTS~LD~~te~~I~~--~l~~~~-~~~TvI~IaHrl~ti~~~DrI~Vl~~G~ 1048 (1082)
|++|||||||++||+.+.+.+.+ .++... .+.|+|++||+++.+..||++++|++|+
T Consensus 159 p~illlDEPt~~LD~~~~~~l~~~~ll~~~~~~~~tii~~sH~~~~~~~~d~i~~l~~G~ 218 (218)
T cd03290 159 TNIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVTHKLQYLPHADWIIAMKDGS 218 (218)
T ss_pred CCEEEEeCCccccCHHHHHHHHHHHHHHHHhcCCCEEEEEeCChHHHhhCCEEEEecCCC
Confidence 99999999999999999998887 454443 3689999999999998899999999984
|
The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. |
| >PRK10744 pstB phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-41 Score=370.51 Aligned_cols=220 Identities=32% Similarity=0.531 Sum_probs=185.8
Q ss_pred CCcEEEEEEEEECCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHHhCCC-----CCCcEEEECCeeCCC--CC
Q 001411 203 AGQIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYE-----PTSGKILLDGHDLKS--LQ 275 (1082)
Q Consensus 203 ~~~i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~-----~~~G~i~~~g~~~~~--~~ 275 (1082)
.+.++++|++++|++. ++|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|+++.. .+
T Consensus 11 ~~~l~~~~l~~~~~~~--~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~~ 88 (260)
T PRK10744 11 PSKIQVRNLNFYYGKF--HALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQD 88 (260)
T ss_pred CceEEEEEEEEEeCCe--EEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEccccccc
Confidence 3569999999999753 49999999999999999999999999999999999986 589999999999853 45
Q ss_pred HHHHhhhceEEccCCCcChhcHHHHHhcCCCC---CCH----HHHHHHHHHhchHHHHhcCCCCccccccCCCCCCChHH
Q 001411 276 LKWLREQMGLVSQEPALFATSIANNILLGKED---ASM----DRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQ 348 (1082)
Q Consensus 276 ~~~~~~~i~~v~Q~~~l~~~ti~~ni~~g~~~---~~~----~~~~~~~~~~~~~~~i~~lp~g~~t~~g~~g~~LSgGq 348 (1082)
...+|++|+|++|++.+|+.|++||+.++... .+. +++.++++..++.+ ++....++...+|||||
T Consensus 89 ~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~~~~~~~~~~LS~Gq 161 (260)
T PRK10744 89 IALLRAKVGMVFQKPTPFPMSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWN-------EVKDKLHQSGYSLSGGQ 161 (260)
T ss_pred hHHHhcceEEEecCCccCcCcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCCh-------hhHHHHhcCCCCCCHHH
Confidence 56778899999999999999999999876321 122 23444444444322 22234566778999999
Q ss_pred HHHHHHHHhcccCCCeeEEeCcccCCCHHHHHHHHHHHHHHcCCCeEEEEccCccccc-cCCEEEEEeCCEEEEecCchh
Q 001411 349 KQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVR-DVDTIMVLKNGQVVESGTHVD 427 (1082)
Q Consensus 349 kqri~lARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~vtH~~~~~~-~~d~i~~l~~G~i~~~g~~~~ 427 (1082)
|||++|||||+.+|+++||||||++||+.+++.+.+.|+++.+++|+|++||+++.+. .||++++|++|++++.|++++
T Consensus 162 ~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 241 (260)
T PRK10744 162 QQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELKQDYTVVIVTHNMQQAARCSDYTAFMYLGELIEFGNTDT 241 (260)
T ss_pred HHHHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 9999999999999999999999999999999999999998876789999999999885 589999999999999999988
Q ss_pred hhhc
Q 001411 428 LISK 431 (1082)
Q Consensus 428 l~~~ 431 (1082)
+...
T Consensus 242 ~~~~ 245 (260)
T PRK10744 242 IFTK 245 (260)
T ss_pred HHhC
Confidence 8653
|
|
| >TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-41 Score=369.37 Aligned_cols=212 Identities=28% Similarity=0.436 Sum_probs=184.6
Q ss_pred EEEEeEEEECCCCCCcccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCccCCCCCHHHHhcceE
Q 001411 835 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRKIG 914 (1082)
Q Consensus 835 I~~~~Vs~~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR~~i~ 914 (1082)
++++|++++|+ +.++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+...+|++++
T Consensus 2 l~~~~l~~~~~---~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 78 (256)
T TIGR03873 2 LRLSRVSWSAG---GRLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARARRVA 78 (256)
T ss_pred ceEEeEEEEEC---CEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEEcccCCHHHHhhheE
Confidence 78999999996 347999999999999999999999999999999999999999999999999999988888888999
Q ss_pred EEcccCc-cccccHHHHhccCCCC----------CCHHHHHHHHHHhcHHHHHhhCcccccccccCCCCCCChhHHHHHH
Q 001411 915 LVQQEPA-LFSTTIYENIKYGNED----------ASEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVA 983 (1082)
Q Consensus 915 ~VpQdp~-Lf~gTIreNl~~~~~~----------~~d~ei~~al~~a~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrla 983 (1082)
|+||++. .+..|+++|+.++... ..++.+.++++.+++.+.. ......||||||||++
T Consensus 79 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~qrl~ 147 (256)
T TIGR03873 79 LVEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLA-----------DRDMSTLSGGERQRVH 147 (256)
T ss_pred EecccCccCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhh-----------cCCcccCCHHHHHHHH
Confidence 9999996 4568999999774211 1122455566666654432 2344679999999999
Q ss_pred HHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEecCchhhh-ccCEEEEEeCCEEEEecChHHHhh
Q 001411 984 IARAILKNPSILLLDEATSALDTASENLIQEALDKLM-EGRTTIMVAHRLSTIR-NADKIAVLQQGKVAEIGSHEQLLR 1060 (1082)
Q Consensus 984 LARAlL~~~~ILlLDEaTS~LD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~-~~DrI~Vl~~G~ive~G~~~eLl~ 1060 (1082)
||||++.+|+++||||||++||+.+.+.+.+.|++.. +++|+|++||+++.+. .||+|++|++|++++.|+++++..
T Consensus 148 la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 226 (256)
T TIGR03873 148 VARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAATGVTVVAALHDLNLAASYCDHVVVLDGGRVVAAGPPREVLT 226 (256)
T ss_pred HHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCEEEecCHHHhhC
Confidence 9999999999999999999999999999999999875 3789999999999995 599999999999999999999875
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. |
| >cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-41 Score=360.31 Aligned_cols=203 Identities=26% Similarity=0.482 Sum_probs=173.6
Q ss_pred EEEEEEEEECCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHHhCCCCCCcEEEECCeeCCCCCHHHHhhhceE
Q 001411 206 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGL 285 (1082)
Q Consensus 206 i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 285 (1082)
|+++|++|.|+++ ++++|+||++++| +++|+||||||||||+++|+|+++|++|+|.++|.++...+ ..+++.++|
T Consensus 1 i~~~~~~~~~~~~--~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~-~~~~~~i~~ 76 (211)
T cd03264 1 LQLENLTKRYGKK--RALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQP-QKLRRRIGY 76 (211)
T ss_pred CEEEEEEEEECCE--EEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCccccch-HHHHhheEE
Confidence 4789999999753 4999999999999 99999999999999999999999999999999999987666 667889999
Q ss_pred EccCCCcChh-cHHHHHhcCCC--CCC----HHHHHHHHHHhchHHHHhcCCCCccccccCCCCCCChHHHHHHHHHHhc
Q 001411 286 VSQEPALFAT-SIANNILLGKE--DAS----MDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAV 358 (1082)
Q Consensus 286 v~Q~~~l~~~-ti~~ni~~g~~--~~~----~~~~~~~~~~~~~~~~i~~lp~g~~t~~g~~g~~LSgGqkqri~lARal 358 (1082)
++|++.+|.. |++||+.+... ... .+++.++++..++.+..+ ....+||||||||++|||||
T Consensus 77 ~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrv~la~al 145 (211)
T cd03264 77 LPQEFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNLGDRAK-----------KKIGSLSGGMRRRVGIAQAL 145 (211)
T ss_pred ecCCCcccccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCHHHHh-----------CchhhCCHHHHHHHHHHHHH
Confidence 9999999886 99999986421 111 233445555555443322 33458999999999999999
Q ss_pred ccCCCeeEEeCcccCCCHHHHHHHHHHHHHHcCCCeEEEEccCccccc-cCCEEEEEeCCEEEEec
Q 001411 359 LRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVR-DVDTIMVLKNGQVVESG 423 (1082)
Q Consensus 359 ~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~vtH~~~~~~-~~d~i~~l~~G~i~~~g 423 (1082)
+++|+++||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+. .||++++|++|++++.|
T Consensus 146 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~g~i~~~g 211 (211)
T cd03264 146 VGDPSILIVDEPTAGLDPEERIRFRNLLSELGEDRIVILSTHIVEDVESLCNQVAVLNKGKLVFEG 211 (211)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEecC
Confidence 999999999999999999999999999999876799999999999986 48999999999998764
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-41 Score=356.24 Aligned_cols=199 Identities=38% Similarity=0.581 Sum_probs=179.7
Q ss_pred EEEEEEEEECCCCC---CccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHHhCCCCCCcEEEECCeeCCCCCHHHHhhh
Q 001411 206 IEFSEVCFAYPSRP---HMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQ 282 (1082)
Q Consensus 206 i~~~~v~~~y~~~~---~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~ 282 (1082)
++++||+++|++.. .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++| +
T Consensus 1 l~~~~l~~~~~~~~~~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g-------------~ 67 (204)
T cd03250 1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPG-------------S 67 (204)
T ss_pred CEEeEEEEecCCCCccccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcC-------------E
Confidence 47899999997542 2599999999999999999999999999999999999999999999998 5
Q ss_pred ceEEccCCCcChhcHHHHHhcCCCCCCHHHHHHHHHHhchHHHHhcCCCCccccccCCCCCCChHHHHHHHHHHhcccCC
Q 001411 283 MGLVSQEPALFATSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNP 362 (1082)
Q Consensus 283 i~~v~Q~~~l~~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~lp~g~~t~~g~~g~~LSgGqkqri~lARal~~~~ 362 (1082)
|+|++|+|++|+.|++||+.++... ..++..++++.+++.+++..+|.|++|.+++.+.+||||||||++||||++.+|
T Consensus 68 i~~~~q~~~l~~~t~~enl~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral~~~p 146 (204)
T cd03250 68 IAYVSQEPWIQNGTIRENILFGKPF-DEERYEKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDA 146 (204)
T ss_pred EEEEecCchhccCcHHHHhccCCCc-CHHHHHHHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHHHHHHHHhcCC
Confidence 9999999999999999999987443 345667778888888999999999999999999999999999999999999999
Q ss_pred CeeEEeCcccCCCHHHHHHHHH-HHHHHc-CCCeEEEEccCccccccCCEEEEEeCCE
Q 001411 363 KILLLDEATSALDAESELIVQR-ALEKIM-SNRTTIVVAHRLSTVRDVDTIMVLKNGQ 418 (1082)
Q Consensus 363 ~illlDEpts~LD~~~~~~i~~-~l~~~~-~~~t~i~vtH~~~~~~~~d~i~~l~~G~ 418 (1082)
+++||||||++||+++.+.+.+ .+..+. +++|+|++||+++.+..||++++|++|+
T Consensus 147 ~llllDEP~~~LD~~~~~~l~~~ll~~~~~~~~tvi~~sh~~~~~~~~d~i~~l~~G~ 204 (204)
T cd03250 147 DIYLLDDPLSAVDAHVGRHIFENCILGLLLNNKTRILVTHQLQLLPHADQIVVLDNGR 204 (204)
T ss_pred CEEEEeCccccCCHHHHHHHHHHHHHHhccCCCEEEEEeCCHHHHhhCCEEEEEeCCC
Confidence 9999999999999999888887 455553 4689999999999988899999999984
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-41 Score=377.09 Aligned_cols=212 Identities=22% Similarity=0.432 Sum_probs=183.7
Q ss_pred EEEEeEEEECCCCCCcccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCccCCCCCHHHHhcceE
Q 001411 835 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRKIG 914 (1082)
Q Consensus 835 I~~~~Vs~~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR~~i~ 914 (1082)
++++|++++|+ +..+|+|+||+|++||.+||+||||||||||+++|.|+++|++|+|.+||.++.+ +...+|++++
T Consensus 3 l~~~~l~~~~~---~~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~~~~-~~~~~~~~ig 78 (301)
T TIGR03522 3 IRVSSLTKLYG---TQNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQ-NPKEVQRNIG 78 (301)
T ss_pred EEEEEEEEEEC---CEEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccc-ChHHHHhceE
Confidence 78999999996 3569999999999999999999999999999999999999999999999999877 4467889999
Q ss_pred EEcccCccccc-cHHHHhccCCC--CCC----HHHHHHHHHHhcHHHHHhhCcccccccccCCCCCCChhHHHHHHHHHH
Q 001411 915 LVQQEPALFST-TIYENIKYGNE--DAS----EIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARA 987 (1082)
Q Consensus 915 ~VpQdp~Lf~g-TIreNl~~~~~--~~~----d~ei~~al~~a~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlaLARA 987 (1082)
|+||+|.+|++ |++||+.+... ..+ .+++.++++..++ +........+||||||||++||||
T Consensus 79 ~~~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl-----------~~~~~~~~~~LS~G~~qrv~la~a 147 (301)
T TIGR03522 79 YLPEHNPLYLDMYVREYLQFIAGIYGMKGQLLKQRVEEMIELVGL-----------RPEQHKKIGQLSKGYRQRVGLAQA 147 (301)
T ss_pred EecCCCCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCC-----------chHhcCchhhCCHHHHHHHHHHHH
Confidence 99999999976 99999975321 112 1233344444443 333444557899999999999999
Q ss_pred HccCCCEEEeeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhc-cCEEEEEeCCEEEEecChHHHhhh
Q 001411 988 ILKNPSILLLDEATSALDTASENLIQEALDKLMEGRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGSHEQLLRK 1061 (1082)
Q Consensus 988 lL~~~~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~G~~~eLl~~ 1061 (1082)
|+++|++|||||||++||+.+.+.+++.|++..+++|+|++||+++.+.. ||||++|++|++++.|+++++.++
T Consensus 148 l~~~p~lliLDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sH~l~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 222 (301)
T TIGR03522 148 LIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIGKDKTIILSTHIMQEVEAICDRVIIINKGKIVADKKLDELSAA 222 (301)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHHh
Confidence 99999999999999999999999999999998778999999999999876 999999999999999999999753
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. |
| >PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-41 Score=362.08 Aligned_cols=209 Identities=34% Similarity=0.550 Sum_probs=182.9
Q ss_pred EEEEeEEEECCCCCCcccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCccCCCCCHHHHhcceE
Q 001411 835 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRKIG 914 (1082)
Q Consensus 835 I~~~~Vs~~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR~~i~ 914 (1082)
|+++||+++|+. .+ .|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+. .+++++
T Consensus 2 l~~~~l~~~~~~---~~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~--~~~~i~ 74 (232)
T PRK10771 2 LKLTDITWLYHH---LP--MRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPP--SRRPVS 74 (232)
T ss_pred eEEEEEEEEECC---cc--ceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCeecCcCCh--hhccEE
Confidence 789999999962 22 49999999999999999999999999999999999999999999999887654 357899
Q ss_pred EEcccCccccc-cHHHHhccCC-CC-----CCHHHHHHHHHHhcHHHHHhhCcccccccccCCCCCCChhHHHHHHHHHH
Q 001411 915 LVQQEPALFST-TIYENIKYGN-ED-----ASEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARA 987 (1082)
Q Consensus 915 ~VpQdp~Lf~g-TIreNl~~~~-~~-----~~d~ei~~al~~a~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlaLARA 987 (1082)
|+||++.+|.+ |+++|+.++. +. ..++++.++++..++.+++.+.| ..||||||||++||||
T Consensus 75 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrv~lara 143 (232)
T PRK10771 75 MLFQENNLFSHLTVAQNIGLGLNPGLKLNAAQREKLHAIARQMGIEDLLARLP-----------GQLSGGQRQRVALARC 143 (232)
T ss_pred EEecccccccCCcHHHHHhcccccccCCCHHHHHHHHHHHHHcCcHHHHhCCc-----------ccCCHHHHHHHHHHHH
Confidence 99999999985 9999998642 11 12345777888888776665544 4799999999999999
Q ss_pred HccCCCEEEeeCCCCCCCHHHHHHHHHHHHHhcC--CceEEEEecCchhhhc-cCEEEEEeCCEEEEecChHHHhhh
Q 001411 988 ILKNPSILLLDEATSALDTASENLIQEALDKLME--GRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGSHEQLLRK 1061 (1082)
Q Consensus 988 lL~~~~ILlLDEaTS~LD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~G~~~eLl~~ 1061 (1082)
++++|++|||||||++||+.+.+.+.+.|++..+ ++|+|++||+++.+.. ||+|++|++|++++.|+++++...
T Consensus 144 l~~~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~g~~~~~~~~ 220 (232)
T PRK10771 144 LVREQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLEDAARIAPRSLVVADGRIAWDGPTDELLSG 220 (232)
T ss_pred HhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhC
Confidence 9999999999999999999999999999998753 7899999999999865 999999999999999999999863
|
|
| >PRK14272 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-41 Score=368.54 Aligned_cols=225 Identities=32% Similarity=0.521 Sum_probs=185.9
Q ss_pred cEEEEeEEEECCCCCCcccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCC-----ccEEEECCccCCC--CCH
Q 001411 834 NIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPI-----SGTVLIDGYDIRT--LNL 906 (1082)
Q Consensus 834 ~I~~~~Vs~~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~-----~G~I~idG~di~~--i~~ 906 (1082)
.++++||+++|+ +.++|+|+||+|++||++||+|+||||||||+++|.|+++|+ +|+|.+||.++.. .+.
T Consensus 4 ~l~~~~l~~~~~---~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~ 80 (252)
T PRK14272 4 LLSAQDVNIYYG---DKQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDP 80 (252)
T ss_pred EEEEeeeEEEEC---CEEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCccCH
Confidence 388999999996 347999999999999999999999999999999999999874 8999999999875 345
Q ss_pred HHHhcceEEEcccCccccc-cHHHHhccCCC--CC-CHHHHHH----HHHHhcHHHHHhhCcccccccccCCCCCCChhH
Q 001411 907 RSLRRKIGLVQQEPALFST-TIYENIKYGNE--DA-SEIELMK----ATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQ 978 (1082)
Q Consensus 907 ~~lR~~i~~VpQdp~Lf~g-TIreNl~~~~~--~~-~d~ei~~----al~~a~l~~~i~~lp~gldt~v~e~G~~LSgGQ 978 (1082)
..+|++++|+||+|.+|+. |+++|+.++.. .. .+++..+ .++..++++.+ ++.++. ...+|||||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l---~~~~~~----~~~~LS~G~ 153 (252)
T PRK14272 81 VAMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWDEV---KDRLKT----PATGLSGGQ 153 (252)
T ss_pred HHhhceeEEEeccCccCcCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCcchhh---hhhhcC----CcccCCHHH
Confidence 5788999999999999984 99999975421 11 2333222 23333333222 223343 346799999
Q ss_pred HHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhc-cCEEEEEeCCEEEEecChHH
Q 001411 979 KQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLMEGRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGSHEQ 1057 (1082)
Q Consensus 979 rQrlaLARAlL~~~~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~G~~~e 1057 (1082)
|||++||||++++|++|||||||++||+.+.+.+.+.|++..+++|+|++||+++.+.. ||+|++|++|++++.|++++
T Consensus 154 ~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~ 233 (252)
T PRK14272 154 QQRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKKVTTIIIVTHNMHQAARVSDTTSFFLVGDLVEHGPTDQ 233 (252)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999999987667999999999999976 99999999999999999999
Q ss_pred HhhhccchHHH
Q 001411 1058 LLRKENGIYKQ 1068 (1082)
Q Consensus 1058 Ll~~~~g~f~~ 1068 (1082)
++..+...+..
T Consensus 234 ~~~~~~~~~~~ 244 (252)
T PRK14272 234 LFTNPRDERTE 244 (252)
T ss_pred HHhCcCcHHHH
Confidence 98755444433
|
|
| >PRK14265 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-41 Score=368.63 Aligned_cols=221 Identities=33% Similarity=0.507 Sum_probs=188.3
Q ss_pred ccEEEEeEEEECCCCCCcccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccC-----CccEEEECCccCCC--CC
Q 001411 833 GNIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDP-----ISGTVLIDGYDIRT--LN 905 (1082)
Q Consensus 833 g~I~~~~Vs~~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p-----~~G~I~idG~di~~--i~ 905 (1082)
..|+++||+++|+ +.++|+|+||+|++||++||+|+||||||||+++|.|+++| ++|+|.+||.++.. .+
T Consensus 19 ~~l~~~nl~~~~~---~~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~~~ 95 (274)
T PRK14265 19 SVFEVEGVKVFYG---GFLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQIN 95 (274)
T ss_pred ceEEEeeEEEEeC---CeEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecccccch
Confidence 3699999999996 34699999999999999999999999999999999999864 58999999999864 34
Q ss_pred HHHHhcceEEEcccCccccccHHHHhccCCCC-----CCHHHHHHHHHHhcHHHHHhhCcccccccccCCCCCCChhHHH
Q 001411 906 LRSLRRKIGLVQQEPALFSTTIYENIKYGNED-----ASEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQ 980 (1082)
Q Consensus 906 ~~~lR~~i~~VpQdp~Lf~gTIreNl~~~~~~-----~~d~ei~~al~~a~l~~~i~~lp~gldt~v~e~G~~LSgGQrQ 980 (1082)
...+|++|+|+||++.+|+.|+.+|+.++... ..++++.++++.+++.+.+.. ........|||||||
T Consensus 96 ~~~~~~~i~~v~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~-------~~~~~~~~LSgGq~q 168 (274)
T PRK14265 96 SVKLRRQVGMVFQRPNPFPKSIYENIAFAPRANGYKGNLDELVEDSLRRAAIWEEVKD-------KLKEKGTALSGGQQQ 168 (274)
T ss_pred hHHHhhcEEEEccCCccccccHHHHHHhHHHhcCchHHHHHHHHHHHHHcccchhhHH-------HhcCCcccCCHHHHH
Confidence 45678999999999999999999999874211 123445566777776544432 233455679999999
Q ss_pred HHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhc-cCEEEEEe---------CCEEE
Q 001411 981 RVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLMEGRTTIMVAHRLSTIRN-ADKIAVLQ---------QGKVA 1050 (1082)
Q Consensus 981 rlaLARAlL~~~~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~-~DrI~Vl~---------~G~iv 1050 (1082)
|++|||||+++|++|||||||++||+.+...+.+.|++..+++|||+|+|+++.+.. ||++++|+ +|+++
T Consensus 169 rv~LAraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~~~~~~~~G~~~ 248 (274)
T PRK14265 169 RLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKEQYTIIMVTHNMQQASRVADWTAFFNTEIDEYGKRRGKLV 248 (274)
T ss_pred HHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEecccccccccCceEE
Confidence 999999999999999999999999999999999999998778899999999999965 99999997 89999
Q ss_pred EecChHHHhhhcc
Q 001411 1051 EIGSHEQLLRKEN 1063 (1082)
Q Consensus 1051 e~G~~~eLl~~~~ 1063 (1082)
+.|+++++...+.
T Consensus 249 ~~g~~~~~~~~~~ 261 (274)
T PRK14265 249 EFSPTEQMFGSPQ 261 (274)
T ss_pred EeCCHHHHHhCCC
Confidence 9999999986443
|
|
| >PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-41 Score=368.58 Aligned_cols=220 Identities=25% Similarity=0.455 Sum_probs=183.5
Q ss_pred cEEEEeEEEECCCCCCcccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCccCCCCCHHHH-hcc
Q 001411 834 NIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSL-RRK 912 (1082)
Q Consensus 834 ~I~~~~Vs~~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~l-R~~ 912 (1082)
.|+++||+++|+ +.++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+...+ |..
T Consensus 5 ~l~~~~l~~~~~---~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (255)
T PRK11300 5 LLSVSGLMMRFG---GLLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIARMG 81 (255)
T ss_pred eEEEeeEEEEEC---CEEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCcceEEECCEECCCCCHHHHHhcC
Confidence 489999999996 3579999999999999999999999999999999999999999999999999988876654 456
Q ss_pred eEEEcccCccccc-cHHHHhccCCCCCC--------------HHHHHHHHHHhcHHHHHhhCcccccccccCCCCCCChh
Q 001411 913 IGLVQQEPALFST-TIYENIKYGNEDAS--------------EIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGG 977 (1082)
Q Consensus 913 i~~VpQdp~Lf~g-TIreNl~~~~~~~~--------------d~ei~~al~~a~l~~~i~~lp~gldt~v~e~G~~LSgG 977 (1082)
++|+||+|.+|++ |+++|+.++..... +.+..+. ...+.++++.+ |++........+||||
T Consensus 82 i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~--gl~~~~~~~~~~LS~G 157 (255)
T PRK11300 82 VVRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEA--LDRAATWLERV--GLLEHANRQAGNLAYG 157 (255)
T ss_pred eEEeccCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHH--HHHHHHHHHhC--ChhhhhhCChhhCCHH
Confidence 9999999999986 99999987421100 0000000 11122333333 4544555666789999
Q ss_pred HHHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHhcC--CceEEEEecCchhhhc-cCEEEEEeCCEEEEecC
Q 001411 978 QKQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLME--GRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGS 1054 (1082)
Q Consensus 978 QrQrlaLARAlL~~~~ILlLDEaTS~LD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~G~ 1054 (1082)
||||++||||++.+|++|||||||++||+.+.+.+.+.|++..+ ++|||++||+++.+.. ||+|++|++|++++.|+
T Consensus 158 ~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~~ 237 (255)
T PRK11300 158 QQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMKLVMGISDRIYVVNQGTPLANGT 237 (255)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEecCC
Confidence 99999999999999999999999999999999999999998743 7899999999999866 99999999999999999
Q ss_pred hHHHhh
Q 001411 1055 HEQLLR 1060 (1082)
Q Consensus 1055 ~~eLl~ 1060 (1082)
++++..
T Consensus 238 ~~~~~~ 243 (255)
T PRK11300 238 PEEIRN 243 (255)
T ss_pred HHHHhh
Confidence 999875
|
|
| >PRK10908 cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-41 Score=361.08 Aligned_cols=204 Identities=30% Similarity=0.477 Sum_probs=173.8
Q ss_pred EEEEeEEEECCCCCCcccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCccCCCCCHHH---Hhc
Q 001411 835 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRS---LRR 911 (1082)
Q Consensus 835 I~~~~Vs~~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~---lR~ 911 (1082)
|+++||+++|+. +.++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.+++... +|+
T Consensus 2 l~~~~l~~~~~~--~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~ 79 (222)
T PRK10908 2 IRFEHVSKAYLG--GRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLRR 79 (222)
T ss_pred EEEEeeEEEecC--CCeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCChhHHHHHHh
Confidence 789999999952 346999999999999999999999999999999999999999999999999998776543 688
Q ss_pred ceEEEcccCccc-cccHHHHhccCC--CCCCHH----HHHHHHHHhcHHHHHhhCcccccccccCCCCCCChhHHHHHHH
Q 001411 912 KIGLVQQEPALF-STTIYENIKYGN--EDASEI----ELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAI 984 (1082)
Q Consensus 912 ~i~~VpQdp~Lf-~gTIreNl~~~~--~~~~d~----ei~~al~~a~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlaL 984 (1082)
+++|+||+|.+| ..|+++|+.++. ...+++ ++.++++..++.+... ....+||||||||++|
T Consensus 80 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrv~l 148 (222)
T PRK10908 80 QIGMIFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKAK-----------NFPIQLSGGEQQRVGI 148 (222)
T ss_pred heEEEecCccccccccHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCChhhhh-----------CCchhCCHHHHHHHHH
Confidence 999999999874 679999998642 122322 3445555555544433 2346799999999999
Q ss_pred HHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEecCchhhhc-cCEEEEEeCCEEEE
Q 001411 985 ARAILKNPSILLLDEATSALDTASENLIQEALDKLM-EGRTTIMVAHRLSTIRN-ADKIAVLQQGKVAE 1051 (1082)
Q Consensus 985 ARAlL~~~~ILlLDEaTS~LD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive 1051 (1082)
|||++++|++|||||||++||+.+.+.+.+.|++.. +++|+|+|||+++.+.. ||+|++|++|+++.
T Consensus 149 aral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~ 217 (222)
T PRK10908 149 ARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDIGLISRRSYRMLTLSDGHLHG 217 (222)
T ss_pred HHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEcc
Confidence 999999999999999999999999999999999874 47899999999999976 89999999999863
|
|
| >PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-41 Score=364.65 Aligned_cols=209 Identities=29% Similarity=0.515 Sum_probs=176.6
Q ss_pred cEEEEEEEEECCCCC--CccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHHhCCCCCCcEEEECCeeCCCCCHHH---H
Q 001411 205 QIEFSEVCFAYPSRP--HMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKW---L 279 (1082)
Q Consensus 205 ~i~~~~v~~~y~~~~--~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~---~ 279 (1082)
.++++|++|+|++.. .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+... +
T Consensus 5 ~l~~~~l~~~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~ 84 (233)
T PRK11629 5 LLQCDNLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAEL 84 (233)
T ss_pred eEEEEeEEEEcCCCCcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHHHHHHH
Confidence 489999999997432 35999999999999999999999999999999999999999999999999998776543 3
Q ss_pred h-hhceEEccCCCcChh-cHHHHHhcCCC--CCCH----HHHHHHHHHhchHHHHhcCCCCccccccCCCCCCChHHHHH
Q 001411 280 R-EQMGLVSQEPALFAT-SIANNILLGKE--DASM----DRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQR 351 (1082)
Q Consensus 280 ~-~~i~~v~Q~~~l~~~-ti~~ni~~g~~--~~~~----~~~~~~~~~~~~~~~i~~lp~g~~t~~g~~g~~LSgGqkqr 351 (1082)
+ +.++|++|++.+|+. |++||+.++.. .... +++.++++.. |++........+||||||||
T Consensus 85 ~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~-----------gl~~~~~~~~~~LSgG~~qr 153 (233)
T PRK11629 85 RNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEINSRALEMLAAV-----------GLEHRANHRPSELSGGERQR 153 (233)
T ss_pred HhccEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHc-----------CCchhhhCChhhCCHHHHHH
Confidence 3 579999999998876 99999987421 1111 1223333333 44444555667899999999
Q ss_pred HHHHHhcccCCCeeEEeCcccCCCHHHHHHHHHHHHHHc--CCCeEEEEccCccccccCCEEEEEeCCEEEEecC
Q 001411 352 IAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIM--SNRTTIVVAHRLSTVRDVDTIMVLKNGQVVESGT 424 (1082)
Q Consensus 352 i~lARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~--~~~t~i~vtH~~~~~~~~d~i~~l~~G~i~~~g~ 424 (1082)
++||||++.+|+++||||||++||+.+...+.+.|.++. +++|+|++||+++.+..+|++++|++|++++.|+
T Consensus 154 l~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~~~~~~~~~~~l~~G~i~~~~~ 228 (233)
T PRK11629 154 VAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQLAKRMSRQLEMRDGRLTAELS 228 (233)
T ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhhCEEEEEECCEEEEEec
Confidence 999999999999999999999999999999999999874 4789999999999998889999999999998775
|
|
| >cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-41 Score=361.46 Aligned_cols=209 Identities=26% Similarity=0.457 Sum_probs=175.9
Q ss_pred EEEEEEEEECCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHHhCCCCCCcEEEECCeeCCCCCHHHHhhhceE
Q 001411 206 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGL 285 (1082)
Q Consensus 206 i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 285 (1082)
|+++|++++|++. ++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++... ...+++.++|
T Consensus 1 i~~~~~~~~~~~~--~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~-~~~~~~~i~~ 77 (220)
T cd03265 1 IEVENLVKKYGDF--EAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVRE-PREVRRRIGI 77 (220)
T ss_pred CEEEEEEEEECCE--EeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCcC-hHHHhhcEEE
Confidence 4789999999753 499999999999999999999999999999999999999999999999988653 3566778999
Q ss_pred EccCCCcChh-cHHHHHhcCCCC--CC----HHHHHHHHHHhchHHHHhcCCCCccccccCCCCCCChHHHHHHHHHHhc
Q 001411 286 VSQEPALFAT-SIANNILLGKED--AS----MDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAV 358 (1082)
Q Consensus 286 v~Q~~~l~~~-ti~~ni~~g~~~--~~----~~~~~~~~~~~~~~~~i~~lp~g~~t~~g~~g~~LSgGqkqri~lARal 358 (1082)
++|++.+++. |++||+.++... .. .+++.+.++..++.+.. .....+||||||||++||||+
T Consensus 78 ~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~qr~~la~al 146 (220)
T cd03265 78 VFQDLSVDDELTGWENLYIHARLYGVPGAERRERIDELLDFVGLLEAA-----------DRLVKTYSGGMRRRLEIARSL 146 (220)
T ss_pred ecCCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHh-----------hCChhhCCHHHHHHHHHHHHH
Confidence 9999998876 999999864211 11 22344455555544333 233458999999999999999
Q ss_pred ccCCCeeEEeCcccCCCHHHHHHHHHHHHHHcC--CCeEEEEccCcccccc-CCEEEEEeCCEEEEecCchhh
Q 001411 359 LRNPKILLLDEATSALDAESELIVQRALEKIMS--NRTTIVVAHRLSTVRD-VDTIMVLKNGQVVESGTHVDL 428 (1082)
Q Consensus 359 ~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l 428 (1082)
+.+|+++||||||++||+.+.+.+.+.|.++.+ ++|+|++||+++.+.. ||++++|++|++++.|+++++
T Consensus 147 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 219 (220)
T cd03265 147 VHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYMEEAEQLCDRVAIIDHGRIIAEGTPEEL 219 (220)
T ss_pred hcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEeCChHHc
Confidence 999999999999999999999999999988753 6899999999998865 899999999999999887654
|
In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-41 Score=368.93 Aligned_cols=229 Identities=27% Similarity=0.456 Sum_probs=189.4
Q ss_pred cEEEEeEEEECCCC------CCcccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCccCCCCCHH
Q 001411 834 NIELRNVSFKYPVR------PDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLR 907 (1082)
Q Consensus 834 ~I~~~~Vs~~Y~~~------~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~ 907 (1082)
.|+++||+++|+.. .+.++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++...+.+
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~ 83 (267)
T PRK15112 4 LLEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDYS 83 (267)
T ss_pred eEEEeceEEEecCCCCcccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCchh
Confidence 48999999999631 124799999999999999999999999999999999999999999999999999766666
Q ss_pred HHhcceEEEcccCc--ccc-ccHHHHhccCC---CCC----CHHHHHHHHHHhcHH-HHHhhCcccccccccCCCCCCCh
Q 001411 908 SLRRKIGLVQQEPA--LFS-TTIYENIKYGN---EDA----SEIELMKATKAANAH-GFISRMPEGYQSHVGDRGVQLSG 976 (1082)
Q Consensus 908 ~lR~~i~~VpQdp~--Lf~-gTIreNl~~~~---~~~----~d~ei~~al~~a~l~-~~i~~lp~gldt~v~e~G~~LSg 976 (1082)
..|++++|+||+|. +++ -|+.+|+.+.. ... .++++.++++.+++. +.. +. ...+|||
T Consensus 84 ~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~----~~~~LS~ 152 (267)
T PRK15112 84 YRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDHA-------SY----YPHMLAP 152 (267)
T ss_pred hHhccEEEEecCchhhcCcchhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHH-------hc----CchhcCH
Confidence 66788999999985 444 38888886421 111 124466677777663 222 22 2357999
Q ss_pred hHHHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHhc--CCceEEEEecCchhhhc-cCEEEEEeCCEEEEec
Q 001411 977 GQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLM--EGRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIG 1053 (1082)
Q Consensus 977 GQrQrlaLARAlL~~~~ILlLDEaTS~LD~~te~~I~~~l~~~~--~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~G 1053 (1082)
|||||++|||||+++|+||||||||++||+.+.+.+.+.|++.. .++|||+|||+++.+.. ||+|++|++|++++.|
T Consensus 153 G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~G~i~~~~ 232 (267)
T PRK15112 153 GQKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLGMMKHISDQVLVMHQGEVVERG 232 (267)
T ss_pred HHHHHHHHHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEecC
Confidence 99999999999999999999999999999999999999999875 37899999999999976 9999999999999999
Q ss_pred ChHHHhhhc-cchHHHHHHHh
Q 001411 1054 SHEQLLRKE-NGIYKQLIRLQ 1073 (1082)
Q Consensus 1054 ~~~eLl~~~-~g~f~~l~~~~ 1073 (1082)
+++++.+.+ ...+++++...
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~ 253 (267)
T PRK15112 233 STADVLASPLHELTKRLIAGH 253 (267)
T ss_pred CHHHHhcCCCCHHHHHHHHhc
Confidence 999998643 34566777643
|
|
| >cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-41 Score=357.79 Aligned_cols=201 Identities=33% Similarity=0.540 Sum_probs=174.5
Q ss_pred EEEEeEEEECCCCCCcccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCccCCCCCHHHHhcceE
Q 001411 835 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRKIG 914 (1082)
Q Consensus 835 I~~~~Vs~~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR~~i~ 914 (1082)
|+++|++++|+. .. .|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++...+. .|++++
T Consensus 1 i~~~~l~~~~~~---~~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~--~~~~i~ 73 (211)
T cd03298 1 VRLDKIRFSYGE---QP--MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPP--ADRPVS 73 (211)
T ss_pred CEEEeEEEEeCC---Ee--cceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCcCCH--hHccEE
Confidence 579999999962 22 39999999999999999999999999999999999999999999999987654 467899
Q ss_pred EEcccCccccc-cHHHHhccCCC-C-----CCHHHHHHHHHHhcHHHHHhhCcccccccccCCCCCCChhHHHHHHHHHH
Q 001411 915 LVQQEPALFST-TIYENIKYGNE-D-----ASEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARA 987 (1082)
Q Consensus 915 ~VpQdp~Lf~g-TIreNl~~~~~-~-----~~d~ei~~al~~a~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlaLARA 987 (1082)
|+||+|.+|++ |+++|+.++.. . .+++++.++++..++.+...+.| .+||||||||++||||
T Consensus 74 ~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrv~ia~a 142 (211)
T cd03298 74 MLFQENNLFAHLTVEQNVGLGLSPGLKLTAEDRQAIEVALARVGLAGLEKRLP-----------GELSGGERQRVALARV 142 (211)
T ss_pred EEecccccCCCCcHHHHHhcccccccCccHHHHHHHHHHHHHcCCHHHHhCCc-----------ccCCHHHHHHHHHHHH
Confidence 99999999975 99999986432 1 12445677788877766554433 4799999999999999
Q ss_pred HccCCCEEEeeCCCCCCCHHHHHHHHHHHHHhc--CCceEEEEecCchhhhc-cCEEEEEeCCEEEEec
Q 001411 988 ILKNPSILLLDEATSALDTASENLIQEALDKLM--EGRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIG 1053 (1082)
Q Consensus 988 lL~~~~ILlLDEaTS~LD~~te~~I~~~l~~~~--~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~G 1053 (1082)
++++|++|||||||++||+++.+.+.+.|++.. .++|+|+|||+++.+.. ||+|++|++|++++.|
T Consensus 143 l~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~ 211 (211)
T cd03298 143 LVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQPEDAKRLAQRVVFLDNGRIAAQG 211 (211)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhhhCEEEEEECCEEeecC
Confidence 999999999999999999999999999999875 37899999999999966 9999999999998865
|
Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-41 Score=370.67 Aligned_cols=216 Identities=29% Similarity=0.563 Sum_probs=183.5
Q ss_pred cEEEEEEEEECCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHHhCCCCCCcEEEECCeeCCCCCHHHHhhhce
Q 001411 205 QIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMG 284 (1082)
Q Consensus 205 ~i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 284 (1082)
.++++|++++|++...++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+...+|+.++
T Consensus 7 ~l~~~nl~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i~ 86 (271)
T PRK13632 7 MIKVENVSFSYPNSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEIRKKIG 86 (271)
T ss_pred EEEEEeEEEEcCCCCccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcCCHHHHhcceE
Confidence 58999999999743345999999999999999999999999999999999999999999999999998777778888999
Q ss_pred EEccCCC--cChhcHHHHHhcCCCC--CCHHH----HHHHHHHhchHHHHhcCCCCccccccCCCCCCChHHHHHHHHHH
Q 001411 285 LVSQEPA--LFATSIANNILLGKED--ASMDR----VIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIAR 356 (1082)
Q Consensus 285 ~v~Q~~~--l~~~ti~~ni~~g~~~--~~~~~----~~~~~~~~~~~~~i~~lp~g~~t~~g~~g~~LSgGqkqri~lAR 356 (1082)
|++|+|. ++..|++||+.++... .+.++ +.+.++..++.+ .......+||||||||++|||
T Consensus 87 ~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LS~G~~qrl~lar 155 (271)
T PRK13632 87 IIFQNPDNQFIGATVEDDIAFGLENKKVPPKKMKDIIDDLAKKVGMED-----------YLDKEPQNLSGGQKQRVAIAS 155 (271)
T ss_pred EEEeCHHHhcCcccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCHH-----------HhhCCcccCCHHHHHHHHHHH
Confidence 9999983 4567999999875321 12222 333344444433 334455689999999999999
Q ss_pred hcccCCCeeEEeCcccCCCHHHHHHHHHHHHHHcC--CCeEEEEccCccccccCCEEEEEeCCEEEEecCchhhhhc
Q 001411 357 AVLRNPKILLLDEATSALDAESELIVQRALEKIMS--NRTTIVVAHRLSTVRDVDTIMVLKNGQVVESGTHVDLISK 431 (1082)
Q Consensus 357 al~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~vtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~ 431 (1082)
||+.+|+++||||||++||+.+.+.+.+.|+++.+ ++|+|++||+++.+..||++++|++|++++.|+.+++...
T Consensus 156 al~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 232 (271)
T PRK13632 156 VLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDEAILADKVIVFSEGKLIAQGKPKEILNN 232 (271)
T ss_pred HHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechhHHhhCCEEEEEECCEEEEecCHHHHhcC
Confidence 99999999999999999999999999999998753 4899999999998888999999999999999998887653
|
|
| >PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-41 Score=361.92 Aligned_cols=208 Identities=29% Similarity=0.428 Sum_probs=177.2
Q ss_pred cEEEEeEEEECCCCCC-cccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCccCCCCCHHH---H
Q 001411 834 NIELRNVSFKYPVRPD-ITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRS---L 909 (1082)
Q Consensus 834 ~I~~~~Vs~~Y~~~~~-~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~---l 909 (1082)
.|+++||+++|+.... .++|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.++...+... +
T Consensus 6 ~l~~~~l~~~~~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 85 (228)
T PRK10584 6 IVEVHHLKKSVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAKL 85 (228)
T ss_pred eEEEeeeEEEccCCCcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccCCHHHHHHH
Confidence 4899999999973211 36999999999999999999999999999999999999999999999999998877653 3
Q ss_pred -hcceEEEcccCccccc-cHHHHhccCC--CCCC----HHHHHHHHHHhcHHHHHhhCcccccccccCCCCCCChhHHHH
Q 001411 910 -RRKIGLVQQEPALFST-TIYENIKYGN--EDAS----EIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQR 981 (1082)
Q Consensus 910 -R~~i~~VpQdp~Lf~g-TIreNl~~~~--~~~~----d~ei~~al~~a~l~~~i~~lp~gldt~v~e~G~~LSgGQrQr 981 (1082)
+++++|+||+|.+|+. |+++|+.++. ...+ .+++.++++..++.++..+. ...||||||||
T Consensus 86 ~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LS~Ge~qr 154 (228)
T PRK10584 86 RAKHVGFVFQSFMLIPTLNALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLDHL-----------PAQLSGGEQQR 154 (228)
T ss_pred HhheEEEEEcccccCCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCC-----------hhhCCHHHHHH
Confidence 3689999999999875 9999997531 1111 23456666676665554433 35799999999
Q ss_pred HHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHhc-C-CceEEEEecCchhhhccCEEEEEeCCEEEEe
Q 001411 982 VAIARAILKNPSILLLDEATSALDTASENLIQEALDKLM-E-GRTTIMVAHRLSTIRNADKIAVLQQGKVAEI 1052 (1082)
Q Consensus 982 laLARAlL~~~~ILlLDEaTS~LD~~te~~I~~~l~~~~-~-~~TvI~IaHrl~ti~~~DrI~Vl~~G~ive~ 1052 (1082)
++|||||+++|++|||||||++||+.+.+.+.+.|++.. + ++|||+|||+++.+..||++++|++|+++|.
T Consensus 155 l~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~d~i~~l~~g~i~~~ 227 (228)
T PRK10584 155 VALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQLAARCDRRLRLVNGQLQEE 227 (228)
T ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEec
Confidence 999999999999999999999999999999999999874 3 7899999999999988999999999999874
|
|
| >PRK13536 nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-41 Score=380.06 Aligned_cols=213 Identities=30% Similarity=0.499 Sum_probs=181.9
Q ss_pred cEEEEeEEEECCCCCCcccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCccCCCCCHHHHhcce
Q 001411 834 NIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRKI 913 (1082)
Q Consensus 834 ~I~~~~Vs~~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR~~i 913 (1082)
.|+++||+++|+ +..+|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++.+.+ ..+|++|
T Consensus 41 ~i~i~nl~k~y~---~~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~~-~~~~~~i 116 (340)
T PRK13536 41 AIDLAGVSKSYG---DKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARA-RLARARI 116 (340)
T ss_pred eEEEEEEEEEEC---CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcch-HHHhccE
Confidence 499999999996 346999999999999999999999999999999999999999999999999997654 5688999
Q ss_pred EEEcccCccc-cccHHHHhccCCC--CCCHHHH----HHHHHHhcHHHHHhhCcccccccccCCCCCCChhHHHHHHHHH
Q 001411 914 GLVQQEPALF-STTIYENIKYGNE--DASEIEL----MKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIAR 986 (1082)
Q Consensus 914 ~~VpQdp~Lf-~gTIreNl~~~~~--~~~d~ei----~~al~~a~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlaLAR 986 (1082)
+|+||++.+| ..|++||+.+... ..+..+. .++++..+ +++..++.+ .+||||||||++|||
T Consensus 117 g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~-------L~~~~~~~~----~~LS~G~kqrv~lA~ 185 (340)
T PRK13536 117 GVVPQFDNLDLEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFAR-------LESKADARV----SDLSGGMKRRLTLAR 185 (340)
T ss_pred EEEeCCccCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcC-------CchhhCCCh----hhCCHHHHHHHHHHH
Confidence 9999999987 5699999975321 1222222 22233332 333445554 469999999999999
Q ss_pred HHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEecCchhhhc-cCEEEEEeCCEEEEecChHHHhhh
Q 001411 987 AILKNPSILLLDEATSALDTASENLIQEALDKLM-EGRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGSHEQLLRK 1061 (1082)
Q Consensus 987 AlL~~~~ILlLDEaTS~LD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~G~~~eLl~~ 1061 (1082)
||+.+|++|||||||++||+.+.+.+++.|++.. +++|||++||+++.+.. ||+|++|++|++++.|+++++.++
T Consensus 186 aL~~~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~~g~tilisSH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~~~ 262 (340)
T PRK13536 186 ALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLEAGRKIAEGRPHALIDE 262 (340)
T ss_pred HHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhh
Confidence 9999999999999999999999999999999875 48999999999999965 999999999999999999999763
|
|
| >PRK14255 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-41 Score=367.61 Aligned_cols=222 Identities=32% Similarity=0.519 Sum_probs=185.9
Q ss_pred cEEEEeEEEECCCCCCcccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccc--C---CccEEEECCccCCC--CCH
Q 001411 834 NIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYD--P---ISGTVLIDGYDIRT--LNL 906 (1082)
Q Consensus 834 ~I~~~~Vs~~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~--p---~~G~I~idG~di~~--i~~ 906 (1082)
.|+++||+++|+ +.++|+|+||+|++||++||+|+||||||||+++|.|+++ | ++|+|.+||.++.. .+.
T Consensus 5 ~l~~~~l~~~~~---~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 81 (252)
T PRK14255 5 IITSSDVHLFYG---KFEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNEDV 81 (252)
T ss_pred eEEEEeEEEEEC---CeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEcccccccH
Confidence 489999999996 3469999999999999999999999999999999999975 4 58999999999864 345
Q ss_pred HHHhcceEEEcccCccccccHHHHhccCCC--CC-C----HHHHHHHHHHhcHHHHHhhCcccccccccCCCCCCChhHH
Q 001411 907 RSLRRKIGLVQQEPALFSTTIYENIKYGNE--DA-S----EIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQK 979 (1082)
Q Consensus 907 ~~lR~~i~~VpQdp~Lf~gTIreNl~~~~~--~~-~----d~ei~~al~~a~l~~~i~~lp~gldt~v~e~G~~LSgGQr 979 (1082)
..+|++++|+||+|.+|+.|+++|+.++.. .. . ++++.++++.+++.+.+ .........+||||||
T Consensus 82 ~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i-------~~~~~~~~~~LS~Gq~ 154 (252)
T PRK14255 82 VQLRKQVGMVFQQPNPFPFSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWDEV-------KDHLHESALSLSGGQQ 154 (252)
T ss_pred HHhcCeEEEEECCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCccch-------hhHHhcCcccCCHHHH
Confidence 567889999999999999999999986421 11 1 23344555555543322 2223445568999999
Q ss_pred HHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhc-cCEEEEEeCCEEEEecChHHH
Q 001411 980 QRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLMEGRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGSHEQL 1058 (1082)
Q Consensus 980 QrlaLARAlL~~~~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~G~~~eL 1058 (1082)
||++||||++++|++|||||||++||+.+.+.+.+.|++..+++|+|+|||+++.+.. ||+|++|++|++++.|++.+.
T Consensus 155 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 234 (252)
T PRK14255 155 QRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRDQYTIILVTHSMHQASRISDKTAFFLTGNLIEFADTKQM 234 (252)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHhCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999988667899999999999865 999999999999999999999
Q ss_pred hhhccch
Q 001411 1059 LRKENGI 1065 (1082)
Q Consensus 1059 l~~~~g~ 1065 (1082)
...+...
T Consensus 235 ~~~~~~~ 241 (252)
T PRK14255 235 FLNPKEK 241 (252)
T ss_pred hcCCCCh
Confidence 8654433
|
|
| >PRK14246 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-41 Score=367.07 Aligned_cols=227 Identities=27% Similarity=0.474 Sum_probs=189.4
Q ss_pred cEEEEeEEEECCCCCCcccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEEC------CccCCCCCHH
Q 001411 834 NIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLID------GYDIRTLNLR 907 (1082)
Q Consensus 834 ~I~~~~Vs~~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~id------G~di~~i~~~ 907 (1082)
.|+++|++++|+ +.++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.++ |.++.+++..
T Consensus 10 ~i~~~~~~~~~~---~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~g~~~~~~~~~ 86 (257)
T PRK14246 10 VFNISRLYLYIN---DKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQIDAI 86 (257)
T ss_pred heeeeeEEEecC---CceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEECCcccccCCHH
Confidence 599999999996 3469999999999999999999999999999999999999998666555 5777777778
Q ss_pred HHhcceEEEcccCccccc-cHHHHhccCCC--CC-CHHH----HHHHHHHhcHHHHHhhCcccccccccCCCCCCChhHH
Q 001411 908 SLRRKIGLVQQEPALFST-TIYENIKYGNE--DA-SEIE----LMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQK 979 (1082)
Q Consensus 908 ~lR~~i~~VpQdp~Lf~g-TIreNl~~~~~--~~-~d~e----i~~al~~a~l~~~i~~lp~gldt~v~e~G~~LSgGQr 979 (1082)
.+|++++|+||+|.+|.+ |+++|+.++.. .. .+++ +.++++..++.+++. ......+..||+|||
T Consensus 87 ~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~~~~~~~~LS~G~~ 159 (257)
T PRK14246 87 KLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEVY-------DRLNSPASQLSGGQQ 159 (257)
T ss_pred HHhcceEEEccCCccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCccch-------hhhcCCcccCCHHHH
Confidence 889999999999999976 99999986421 11 2222 344555555543221 123345567999999
Q ss_pred HHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhh-ccCEEEEEeCCEEEEecChHHH
Q 001411 980 QRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLMEGRTTIMVAHRLSTIR-NADKIAVLQQGKVAEIGSHEQL 1058 (1082)
Q Consensus 980 QrlaLARAlL~~~~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~-~~DrI~Vl~~G~ive~G~~~eL 1058 (1082)
||++||||++++|++|||||||++||..+.+.+.+.|++..+++|+|+|||+++.+. .||++++|++|++++.|+++++
T Consensus 160 qrl~laral~~~P~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiilvsh~~~~~~~~~d~v~~l~~g~i~~~g~~~~~ 239 (257)
T PRK14246 160 QRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKNEIAIVIVSHNPQQVARVADYVAFLYNGELVEWGSSNEI 239 (257)
T ss_pred HHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCcEEEEEECCHHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 999999999999999999999999999999999999998877799999999999995 5999999999999999999999
Q ss_pred hhhccchHHHHH
Q 001411 1059 LRKENGIYKQLI 1070 (1082)
Q Consensus 1059 l~~~~g~f~~l~ 1070 (1082)
.+.+...|.+.+
T Consensus 240 ~~~~~~~~~~~~ 251 (257)
T PRK14246 240 FTSPKNELTEKY 251 (257)
T ss_pred HhCCCcHHHHHH
Confidence 875555565544
|
|
| >cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-41 Score=367.04 Aligned_cols=218 Identities=33% Similarity=0.553 Sum_probs=181.8
Q ss_pred EEEEEEEEECCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHHhCCCCCCcEEEECCeeCCCCCHHHHhhhceE
Q 001411 206 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGL 285 (1082)
Q Consensus 206 i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 285 (1082)
++++|++++|++. ..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+...+++.++|
T Consensus 1 l~~~~l~~~~~~~-~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 79 (242)
T cd03295 1 IEFENVTKRYGGG-KKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRRKIGY 79 (242)
T ss_pred CEEEEEEEEeCCc-ceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcCChHHhhcceEE
Confidence 4689999999752 349999999999999999999999999999999999999999999999999988777777889999
Q ss_pred EccCCCcCh-hcHHHHHhcCCCC--CCHHHHHHHHHHhchHHHHhcCCCCccc--cccCCCCCCChHHHHHHHHHHhccc
Q 001411 286 VSQEPALFA-TSIANNILLGKED--ASMDRVIEAAKAANAHSFVEGLPDGYQT--QVGEGGTQLSGGQKQRIAIARAVLR 360 (1082)
Q Consensus 286 v~Q~~~l~~-~ti~~ni~~g~~~--~~~~~~~~~~~~~~~~~~i~~lp~g~~t--~~g~~g~~LSgGqkqri~lARal~~ 360 (1082)
++|++.+|+ .|++||+.++... ...++.. ..+.+.++.+ |+.. .....+.+||||||||++|||||+.
T Consensus 80 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~-----~~~~~~l~~l--~l~~~~~~~~~~~~LS~G~~qrv~laral~~ 152 (242)
T cd03295 80 VIQQIGLFPHMTVEENIALVPKLLKWPKEKIR-----ERADELLALV--GLDPAEFADRYPHELSGGQQQRVGVARALAA 152 (242)
T ss_pred EccCccccCCCcHHHHHHHHHHHcCCCHHHHH-----HHHHHHHHHc--CCCcHHHHhcChhhCCHHHHHHHHHHHHHhc
Confidence 999999986 5999999875321 1111111 1112233333 3332 4456678999999999999999999
Q ss_pred CCCeeEEeCcccCCCHHHHHHHHHHHHHHcC--CCeEEEEccCccccc-cCCEEEEEeCCEEEEecCchhhhhc
Q 001411 361 NPKILLLDEATSALDAESELIVQRALEKIMS--NRTTIVVAHRLSTVR-DVDTIMVLKNGQVVESGTHVDLISK 431 (1082)
Q Consensus 361 ~~~illlDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~vtH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~~ 431 (1082)
+|+++||||||++||+.+.+.+.+.|.++.+ ++|+|++||+++.+. .||+|++|++|++++.|+++++.+.
T Consensus 153 ~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 226 (242)
T cd03295 153 DPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQVGTPDEILRS 226 (242)
T ss_pred CCCEEEecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHHcC
Confidence 9999999999999999999999999998753 789999999999875 5899999999999999998887543
|
ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14235 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-41 Score=370.72 Aligned_cols=219 Identities=31% Similarity=0.496 Sum_probs=184.6
Q ss_pred CCcEEEEEEEEECCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHHhCCCC-----CCcEEEECCeeCCC--CC
Q 001411 203 AGQIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEP-----TSGKILLDGHDLKS--LQ 275 (1082)
Q Consensus 203 ~~~i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~-----~~G~i~~~g~~~~~--~~ 275 (1082)
.+.|+++|++++|++ ..+|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|+++.. .+
T Consensus 17 ~~~l~~~nl~~~~~~--~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~~ 94 (267)
T PRK14235 17 EIKMRARDVSVFYGE--KQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRLD 94 (267)
T ss_pred CceEEEEeEEEEECC--EEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECcccccc
Confidence 357999999999974 3499999999999999999999999999999999999975 89999999999864 34
Q ss_pred HHHHhhhceEEccCCCcChhcHHHHHhcCCCC--C--C----HHHHHHHHHHhchHHHHhcCCCCccccccCCCCCCChH
Q 001411 276 LKWLREQMGLVSQEPALFATSIANNILLGKED--A--S----MDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGG 347 (1082)
Q Consensus 276 ~~~~~~~i~~v~Q~~~l~~~ti~~ni~~g~~~--~--~----~~~~~~~~~~~~~~~~i~~lp~g~~t~~g~~g~~LSgG 347 (1082)
...+|+.++|++|++.+|+.|+.||+.++... . . .+++.++++..++.+.+ ....+..+.+||||
T Consensus 95 ~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LSgG 167 (267)
T PRK14235 95 VVELRARVGMVFQKPNPFPKSIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEV-------KDRLHEPGTGLSGG 167 (267)
T ss_pred hHHHhhceEEEecCCCCCCCcHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhh-------hHHhhCCcccCCHH
Confidence 56678899999999999988999999875310 0 1 12334444444442221 12345567789999
Q ss_pred HHHHHHHHHhcccCCCeeEEeCcccCCCHHHHHHHHHHHHHHcCCCeEEEEccCcccccc-CCEEEEEeCCEEEEecCch
Q 001411 348 QKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRD-VDTIMVLKNGQVVESGTHV 426 (1082)
Q Consensus 348 qkqri~lARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~ 426 (1082)
||||++|||||+.+|++|||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+.. ||++++|++|++++.|+++
T Consensus 168 q~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~~~tiiivtH~~~~~~~~~d~v~~l~~G~i~~~g~~~ 247 (267)
T PRK14235 168 QQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQNYTIVIVTHSMQQAARVSQRTAFFHLGNLVEVGDTE 247 (267)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhcCCeEEEEEcCHHHHHhhCCEEEEEECCEEEEeCCHH
Confidence 999999999999999999999999999999999999999988767899999999999854 8999999999999999998
Q ss_pred hhhh
Q 001411 427 DLIS 430 (1082)
Q Consensus 427 ~l~~ 430 (1082)
++..
T Consensus 248 ~~~~ 251 (267)
T PRK14235 248 KMFT 251 (267)
T ss_pred HHHh
Confidence 8764
|
|
| >PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-41 Score=372.50 Aligned_cols=215 Identities=29% Similarity=0.504 Sum_probs=183.0
Q ss_pred cEEEEEEEEECCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHHhCCCCCCcEEEECCeeCC--CCCHHHHhhh
Q 001411 205 QIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLK--SLQLKWLREQ 282 (1082)
Q Consensus 205 ~i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~--~~~~~~~~~~ 282 (1082)
.|+++|++|+|++. ..+|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++. ..+...+++.
T Consensus 5 ~l~~~~l~~~~~~~-~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~ 83 (283)
T PRK13636 5 ILKVEELNYNYSDG-THALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLRES 83 (283)
T ss_pred eEEEEeEEEEeCCC-CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEECCCCcchHHHHHhh
Confidence 48999999999632 34999999999999999999999999999999999999999999999999984 3345677889
Q ss_pred ceEEccCC--CcChhcHHHHHhcCCCC--CCH----HHHHHHHHHhchHHHHhcCCCCccccccCCCCCCChHHHHHHHH
Q 001411 283 MGLVSQEP--ALFATSIANNILLGKED--ASM----DRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAI 354 (1082)
Q Consensus 283 i~~v~Q~~--~l~~~ti~~ni~~g~~~--~~~----~~~~~~~~~~~~~~~i~~lp~g~~t~~g~~g~~LSgGqkqri~l 354 (1082)
++|++|++ .+++.|++||+.++... .+. +++.++++..++ .........+||||||||++|
T Consensus 84 ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL-----------~~~~~~~~~~LS~G~~qrl~l 152 (283)
T PRK13636 84 VGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGI-----------EHLKDKPTHCLSFGQKKRVAI 152 (283)
T ss_pred EEEEecCcchhhccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCC-----------hhhhhCCcccCCHHHHHHHHH
Confidence 99999998 57888999999875321 122 233344444443 333445667999999999999
Q ss_pred HHhcccCCCeeEEeCcccCCCHHHHHHHHHHHHHHcC--CCeEEEEccCccccc-cCCEEEEEeCCEEEEecCchhhhhc
Q 001411 355 ARAVLRNPKILLLDEATSALDAESELIVQRALEKIMS--NRTTIVVAHRLSTVR-DVDTIMVLKNGQVVESGTHVDLISK 431 (1082)
Q Consensus 355 ARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~vtH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~~ 431 (1082)
||||+.+|++|||||||++||+.+...+.+.|.++.+ ++|+|++||+++.+. .||++++|++|++++.|+++++.+.
T Consensus 153 araL~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~ 232 (283)
T PRK13636 153 AGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFAE 232 (283)
T ss_pred HHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 9999999999999999999999999999999998753 789999999999986 5999999999999999999988764
|
|
| >PRK11607 potG putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-41 Score=383.33 Aligned_cols=213 Identities=29% Similarity=0.484 Sum_probs=181.7
Q ss_pred CcEEEEEEEEECCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHHhCCCCCCcEEEECCeeCCCCCHHHHhhhc
Q 001411 204 GQIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQM 283 (1082)
Q Consensus 204 ~~i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i 283 (1082)
..++++|++++|++ ..+|+|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++.+.++ .++.|
T Consensus 18 ~~l~l~~v~~~~~~--~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~--~~r~i 93 (377)
T PRK11607 18 PLLEIRNLTKSFDG--QHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPP--YQRPI 93 (377)
T ss_pred ceEEEEeEEEEECC--EEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCH--HHCCE
Confidence 35999999999974 349999999999999999999999999999999999999999999999999877654 46789
Q ss_pred eEEccCCCcChh-cHHHHHhcCCCC--CCH----HHHHHHHHHhchHHHHhcCCCCccccccCCCCCCChHHHHHHHHHH
Q 001411 284 GLVSQEPALFAT-SIANNILLGKED--ASM----DRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIAR 356 (1082)
Q Consensus 284 ~~v~Q~~~l~~~-ti~~ni~~g~~~--~~~----~~~~~~~~~~~~~~~i~~lp~g~~t~~g~~g~~LSgGqkqri~lAR 356 (1082)
|||+|++.+|+. |+.|||.|+... .+. +++.+.++..++.+ .......+|||||||||+|||
T Consensus 94 g~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~v~~~l~~l~L~~-----------~~~~~~~~LSgGq~QRVaLAR 162 (377)
T PRK11607 94 NMMFQSYALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQE-----------FAKRKPHQLSGGQRQRVALAR 162 (377)
T ss_pred EEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCch-----------hhcCChhhCCHHHHHHHHHHH
Confidence 999999999987 999999987431 122 23334444444433 334445689999999999999
Q ss_pred hcccCCCeeEEeCcccCCCHHHHHHHHHHHHHHc--CCCeEEEEccCccccc-cCCEEEEEeCCEEEEecCchhhhhc
Q 001411 357 AVLRNPKILLLDEATSALDAESELIVQRALEKIM--SNRTTIVVAHRLSTVR-DVDTIMVLKNGQVVESGTHVDLISK 431 (1082)
Q Consensus 357 al~~~~~illlDEpts~LD~~~~~~i~~~l~~~~--~~~t~i~vtH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~~ 431 (1082)
||+.+|++||||||||+||+.++..+.+.|+++. .+.|+|+|||+++++. .||+|++|++|++++.|+++++..+
T Consensus 163 AL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~~~~~ 240 (377)
T PRK11607 163 SLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQEEAMTMAGRIAIMNRGKFVQIGEPEEIYEH 240 (377)
T ss_pred HHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEeCCEEEEEcCHHHHHhC
Confidence 9999999999999999999999999998887764 3689999999999865 5999999999999999999998765
|
|
| >cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-41 Score=347.87 Aligned_cols=178 Identities=35% Similarity=0.658 Sum_probs=164.6
Q ss_pred EEEEEEEEECCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHHhCCCCCCcEEEECCeeCCCCCHHHHhhhceE
Q 001411 206 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGL 285 (1082)
Q Consensus 206 i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 285 (1082)
|+++|++++|++...++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++... ...+++.++|
T Consensus 1 i~~~~~~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~-~~~~~~~i~~ 79 (178)
T cd03247 1 LSINNVSFSYPEQEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDL-EKALSSLISV 79 (178)
T ss_pred CEEEEEEEEeCCCCccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHH-HHHHHhhEEE
Confidence 478999999976433599999999999999999999999999999999999999999999999988665 5667888999
Q ss_pred EccCCCcChhcHHHHHhcCCCCCCHHHHHHHHHHhchHHHHhcCCCCccccccCCCCCCChHHHHHHHHHHhcccCCCee
Q 001411 286 VSQEPALFATSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKIL 365 (1082)
Q Consensus 286 v~Q~~~l~~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~lp~g~~t~~g~~g~~LSgGqkqri~lARal~~~~~il 365 (1082)
++|++++|+.|++||+ ...||||||||++||||++.+|+++
T Consensus 80 ~~q~~~~~~~tv~~~i---------------------------------------~~~LS~G~~qrv~laral~~~p~~l 120 (178)
T cd03247 80 LNQRPYLFDTTLRNNL---------------------------------------GRRFSGGERQRLALARILLQDAPIV 120 (178)
T ss_pred EccCCeeecccHHHhh---------------------------------------cccCCHHHHHHHHHHHHHhcCCCEE
Confidence 9999999999999998 3579999999999999999999999
Q ss_pred EEeCcccCCCHHHHHHHHHHHHHHcCCCeEEEEccCccccccCCEEEEEeCCEEEEec
Q 001411 366 LLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRDVDTIMVLKNGQVVESG 423 (1082)
Q Consensus 366 llDEpts~LD~~~~~~i~~~l~~~~~~~t~i~vtH~~~~~~~~d~i~~l~~G~i~~~g 423 (1082)
||||||++||+.+.+.+.+.|.++.+++|+|++||+++.++.||++++|++|++++.|
T Consensus 121 llDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~~~~l~~g~i~~~~ 178 (178)
T cd03247 121 LLDEPTVGLDPITERQLLSLIFEVLKDKTLIWITHHLTGIEHMDKILFLENGKIIMQG 178 (178)
T ss_pred EEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHhCCEEEEEECCEEEecC
Confidence 9999999999999999999999887788999999999999889999999999998754
|
The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. |
| >PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-41 Score=379.07 Aligned_cols=229 Identities=22% Similarity=0.359 Sum_probs=187.8
Q ss_pred cEEEEeEEEECCCCC-CcccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccc----CCccEEEECCccCCCCCHHH
Q 001411 834 NIELRNVSFKYPVRP-DITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYD----PISGTVLIDGYDIRTLNLRS 908 (1082)
Q Consensus 834 ~I~~~~Vs~~Y~~~~-~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~----p~~G~I~idG~di~~i~~~~ 908 (1082)
-|+++|++++|+.+. ...+|+||||+|++||++||+|+||||||||+++|.|+.+ |++|+|.+||+++.+++.+.
T Consensus 3 ~L~v~~l~~~y~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~ 82 (330)
T PRK15093 3 LLDIRNLTIEFKTSDGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPRE 82 (330)
T ss_pred eEEEeeeEEEEeCCCCCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHHH
Confidence 389999999996321 2469999999999999999999999999999999999986 58999999999999888766
Q ss_pred Hh----cceEEEcccCc--ccc-ccHHHHhccCC------C----C--CCHHHHHHHHHHhcHHHHHhhCcccccccccC
Q 001411 909 LR----RKIGLVQQEPA--LFS-TTIYENIKYGN------E----D--ASEIELMKATKAANAHGFISRMPEGYQSHVGD 969 (1082)
Q Consensus 909 lR----~~i~~VpQdp~--Lf~-gTIreNl~~~~------~----~--~~d~ei~~al~~a~l~~~i~~lp~gldt~v~e 969 (1082)
++ ++|+||||+|. +++ .||.+|+.... . . ...+++.++++.+++.+.-. ....
T Consensus 83 ~~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~--------~~~~ 154 (330)
T PRK15093 83 RRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKD--------AMRS 154 (330)
T ss_pred HHHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHH--------HHhC
Confidence 53 47999999997 333 58988885310 0 0 01234566677776643210 1123
Q ss_pred CCCCCChhHHHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHhcC--CceEEEEecCchhhhc-cCEEEEEeC
Q 001411 970 RGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLME--GRTTIMVAHRLSTIRN-ADKIAVLQQ 1046 (1082)
Q Consensus 970 ~G~~LSgGQrQrlaLARAlL~~~~ILlLDEaTS~LD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~~-~DrI~Vl~~ 1046 (1082)
....||||||||++|||||+.+|+||||||||++||+.+...|.+.|++..+ +.|+|+|||+++.+.. ||||+||++
T Consensus 155 ~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl~~v~~~~dri~vm~~ 234 (330)
T PRK15093 155 FPYELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQMLSQWADKINVLYC 234 (330)
T ss_pred CchhCCHHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEEC
Confidence 3467999999999999999999999999999999999999999999998753 7899999999999965 999999999
Q ss_pred CEEEEecChHHHhhhccchHHHHH
Q 001411 1047 GKVAEIGSHEQLLRKENGIYKQLI 1070 (1082)
Q Consensus 1047 G~ive~G~~~eLl~~~~g~f~~l~ 1070 (1082)
|+|+|.|+++++++++...|.+.+
T Consensus 235 G~ive~g~~~~i~~~p~~~y~~~l 258 (330)
T PRK15093 235 GQTVETAPSKELVTTPHHPYTQAL 258 (330)
T ss_pred CEEEEECCHHHHHhCCCCHHHHHH
Confidence 999999999999876666776533
|
|
| >cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-41 Score=358.60 Aligned_cols=201 Identities=25% Similarity=0.517 Sum_probs=170.9
Q ss_pred EEEEeEEEECCCCCCcccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCccCCCCCHHHHhcceE
Q 001411 835 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRKIG 914 (1082)
Q Consensus 835 I~~~~Vs~~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR~~i~ 914 (1082)
|+++|++++|+ +.++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.. .+|++++
T Consensus 1 l~~~~l~~~~~---~~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~----~~~~~i~ 73 (210)
T cd03269 1 LEVENVTKRFG---RVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDI----AARNRIG 73 (210)
T ss_pred CEEEEEEEEEC---CEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCchhH----HHHccEE
Confidence 47899999996 3469999999999999999999999999999999999999999999999998753 5678999
Q ss_pred EEcccCccccc-cHHHHhccCCC--CCC----HHHHHHHHHHhcHHHHHhhCcccccccccCCCCCCChhHHHHHHHHHH
Q 001411 915 LVQQEPALFST-TIYENIKYGNE--DAS----EIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARA 987 (1082)
Q Consensus 915 ~VpQdp~Lf~g-TIreNl~~~~~--~~~----d~ei~~al~~a~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlaLARA 987 (1082)
|+||++.+|++ |+++|+.++.. ..+ ++++.++++..++. ........+||||||||++||||
T Consensus 74 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~LS~G~~qrl~la~a 142 (210)
T cd03269 74 YLPEERGLYPKMKVIDQLVYLAQLKGLKKEEARRRIDEWLERLELS-----------EYANKRVEELSKGNQQKVQFIAA 142 (210)
T ss_pred EeccCCcCCcCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCh-----------HHHhCcHhhCCHHHHHHHHHHHH
Confidence 99999999875 99999976321 111 22333444444443 33334456799999999999999
Q ss_pred HccCCCEEEeeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEecCchhhhc-cCEEEEEeCCEEEEec
Q 001411 988 ILKNPSILLLDEATSALDTASENLIQEALDKLM-EGRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIG 1053 (1082)
Q Consensus 988 lL~~~~ILlLDEaTS~LD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~G 1053 (1082)
++++|++|||||||++||+.+.+.+.+.|++.. +++|+|++||+++.+.. ||++++|++|++++.|
T Consensus 143 l~~~p~~lllDEP~~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~ 210 (210)
T cd03269 143 VIHDPELLILDEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQMELVEELCDRVLLLNKGRAVLYG 210 (210)
T ss_pred HhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhhhEEEEEeCCEEEecC
Confidence 999999999999999999999999999999865 47899999999999865 9999999999998865
|
In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-41 Score=359.79 Aligned_cols=206 Identities=26% Similarity=0.444 Sum_probs=173.9
Q ss_pred EEEEEEEEECCCCCC--ccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHHhCCCCCCcEEEECCeeCCCCCHHHHhhhc
Q 001411 206 IEFSEVCFAYPSRPH--MVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQM 283 (1082)
Q Consensus 206 i~~~~v~~~y~~~~~--~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i 283 (1082)
++++|++++|++... ++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|+++.. ...++++.+
T Consensus 2 l~~~~v~~~~~~~~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~-~~~~~~~~i 80 (218)
T cd03266 2 ITADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVK-EPAEARRRL 80 (218)
T ss_pred eEEEEEEEecCCCCccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEccc-CHHHHHhhE
Confidence 689999999975421 59999999999999999999999999999999999999999999999999875 345678899
Q ss_pred eEEccCCCcChh-cHHHHHhcCCCC--CCH----HHHHHHHHHhchHHHHhcCCCCccccccCCCCCCChHHHHHHHHHH
Q 001411 284 GLVSQEPALFAT-SIANNILLGKED--ASM----DRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIAR 356 (1082)
Q Consensus 284 ~~v~Q~~~l~~~-ti~~ni~~g~~~--~~~----~~~~~~~~~~~~~~~i~~lp~g~~t~~g~~g~~LSgGqkqri~lAR 356 (1082)
+|++|++.+|+. |++||+.+.... ... +++.++++.. |++........+||||||||++|||
T Consensus 81 ~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~~~LS~G~~qrv~lar 149 (218)
T cd03266 81 GFVSDSTGLYDRLTARENLEYFAGLYGLKGDELTARLEELADRL-----------GMEELLDRRVGGFSTGMRQKVAIAR 149 (218)
T ss_pred EEecCCcccCcCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHc-----------CCHHHHhhhhhhcCHHHHHHHHHHH
Confidence 999999999986 999999764221 111 2233333333 4444455566789999999999999
Q ss_pred hcccCCCeeEEeCcccCCCHHHHHHHHHHHHHHc-CCCeEEEEccCcccccc-CCEEEEEeCCEEEEec
Q 001411 357 AVLRNPKILLLDEATSALDAESELIVQRALEKIM-SNRTTIVVAHRLSTVRD-VDTIMVLKNGQVVESG 423 (1082)
Q Consensus 357 al~~~~~illlDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~g 423 (1082)
|++.+|+++||||||++||+.+.+.+.+.|.++. +++|+|+|||+++.+.. ||++++|++|++++.|
T Consensus 150 al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~i~~~~ 218 (218)
T cd03266 150 ALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHIMQEVERLCDRVVVLHRGRVVYEG 218 (218)
T ss_pred HHhcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhcCEEEEEECCEEeecC
Confidence 9999999999999999999999999999999875 47899999999998764 8999999999998754
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein. |
| >PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-41 Score=371.09 Aligned_cols=216 Identities=31% Similarity=0.562 Sum_probs=185.6
Q ss_pred cEEEEEEEEECCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHHhCCCCCC---cEEEECCeeCCCCCHHHHhh
Q 001411 205 QIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTS---GKILLDGHDLKSLQLKWLRE 281 (1082)
Q Consensus 205 ~i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~---G~i~~~g~~~~~~~~~~~~~ 281 (1082)
.++++|++|+|++...++|+|+||+|++||+++|+||||||||||+++|+|+++|++ |+|.++|.++...+...+++
T Consensus 5 ~l~i~~l~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~~~~ 84 (282)
T PRK13640 5 IVEFKHVSFTYPDSKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDIRE 84 (282)
T ss_pred eEEEEEEEEEcCCCCccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHHHHh
Confidence 589999999997533459999999999999999999999999999999999999998 89999999998777777788
Q ss_pred hceEEccCCC--cChhcHHHHHhcCCCC--CCH----HHHHHHHHHhchHHHHhcCCCCccccccCCCCCCChHHHHHHH
Q 001411 282 QMGLVSQEPA--LFATSIANNILLGKED--ASM----DRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIA 353 (1082)
Q Consensus 282 ~i~~v~Q~~~--l~~~ti~~ni~~g~~~--~~~----~~~~~~~~~~~~~~~i~~lp~g~~t~~g~~g~~LSgGqkqri~ 353 (1082)
+++|++|+|. +++.|+.|||.++... .+. +++.++++..++.+... ....+||||||||++
T Consensus 85 ~ig~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~-----------~~~~~LS~G~~qrv~ 153 (282)
T PRK13640 85 KVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIKIVRDVLADVGMLDYID-----------SEPANLSGGQKQRVA 153 (282)
T ss_pred heEEEEECHHHhhccCCHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCChhHhc-----------CCcccCCHHHHHHHH
Confidence 9999999984 5677999999876332 122 23445555555544443 344689999999999
Q ss_pred HHHhcccCCCeeEEeCcccCCCHHHHHHHHHHHHHHcC--CCeEEEEccCccccccCCEEEEEeCCEEEEecCchhhhhc
Q 001411 354 IARAVLRNPKILLLDEATSALDAESELIVQRALEKIMS--NRTTIVVAHRLSTVRDVDTIMVLKNGQVVESGTHVDLISK 431 (1082)
Q Consensus 354 lARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~vtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~ 431 (1082)
|||||+.+|+++||||||++||+.+...+.+.|.++.+ ++|+|++||+++.+..||++++|++|++++.|+++++...
T Consensus 154 laral~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 233 (282)
T PRK13640 154 IAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDEANMADQVLVLDDGKLLAQGSPVEIFSK 233 (282)
T ss_pred HHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 99999999999999999999999999999999998753 7899999999999888999999999999999999887653
|
|
| >cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-41 Score=357.52 Aligned_cols=203 Identities=25% Similarity=0.466 Sum_probs=174.3
Q ss_pred EEEEEEEEECCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHHhCCCCCCcEEEECCeeCCCCCHHHHhhhceE
Q 001411 206 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGL 285 (1082)
Q Consensus 206 i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 285 (1082)
|+++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++... ..+++.++|
T Consensus 1 l~~~~l~~~~~~--~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~--~~~~~~i~~ 76 (208)
T cd03268 1 LKTNDLTKTYGK--KRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKN--IEALRRIGA 76 (208)
T ss_pred CEEEEEEEEECC--eEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccch--HHHHhhEEE
Confidence 478999999974 3599999999999999999999999999999999999999999999999988654 456778999
Q ss_pred EccCCCcCh-hcHHHHHhcCCC--CCCHHHHHHHHHHhchHHHHhcCCCCccccccCCCCCCChHHHHHHHHHHhcccCC
Q 001411 286 VSQEPALFA-TSIANNILLGKE--DASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNP 362 (1082)
Q Consensus 286 v~Q~~~l~~-~ti~~ni~~g~~--~~~~~~~~~~~~~~~~~~~i~~lp~g~~t~~g~~g~~LSgGqkqri~lARal~~~~ 362 (1082)
++|++.+++ .|++||+.++.. ..+.+++.++++..++.+.. ......||||||||++||||++.+|
T Consensus 77 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~qrv~la~al~~~p 145 (208)
T cd03268 77 LIEAPGFYPNLTARENLRLLARLLGIRKKRIDEVLDVVGLKDSA-----------KKKVKGFSLGMKQRLGIALALLGNP 145 (208)
T ss_pred ecCCCccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHH-----------hhhHhhCCHHHHHHHHHHHHHhcCC
Confidence 999998885 599999987532 12345566666666554443 3344689999999999999999999
Q ss_pred CeeEEeCcccCCCHHHHHHHHHHHHHHc-CCCeEEEEccCcccccc-CCEEEEEeCCEEEEec
Q 001411 363 KILLLDEATSALDAESELIVQRALEKIM-SNRTTIVVAHRLSTVRD-VDTIMVLKNGQVVESG 423 (1082)
Q Consensus 363 ~illlDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~g 423 (1082)
+++||||||++||+.+.+.+.+.|.++. +++|+|++||+++.+.. ||++++|++|++++.|
T Consensus 146 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~g~i~~~g 208 (208)
T cd03268 146 DLLILDEPTNGLDPDGIKELRELILSLRDQGITVLISSHLLSEIQKVADRIGIINKGKLIEEG 208 (208)
T ss_pred CEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEECCEEEecC
Confidence 9999999999999999999999998875 47899999999998864 8999999999998764
|
Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. |
| >cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-41 Score=345.25 Aligned_cols=172 Identities=44% Similarity=0.741 Sum_probs=162.3
Q ss_pred EEEEeEEEECCCCCCcccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCccCCCCCHHHHhcceE
Q 001411 835 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRKIG 914 (1082)
Q Consensus 835 I~~~~Vs~~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR~~i~ 914 (1082)
|+++|++++|+.. ..++++|+||+|++||.++|+|+||||||||+++|.|+++|++|+|.+||.++.+.+...+|++++
T Consensus 1 i~~~~l~~~~~~~-~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (173)
T cd03246 1 LEVENVSFRYPGA-EPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGDHVG 79 (173)
T ss_pred CEEEEEEEEcCCC-CCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcccCCHHHHHhheE
Confidence 5789999999732 246999999999999999999999999999999999999999999999999999999889999999
Q ss_pred EEcccCccccccHHHHhccCCCCCCHHHHHHHHHHhcHHHHHhhCcccccccccCCCCCCChhHHHHHHHHHHHccCCCE
Q 001411 915 LVQQEPALFSTTIYENIKYGNEDASEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSI 994 (1082)
Q Consensus 915 ~VpQdp~Lf~gTIreNl~~~~~~~~d~ei~~al~~a~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlaLARAlL~~~~I 994 (1082)
|++|+|.+|++|+++|+ ||||||||++||||++++|++
T Consensus 80 ~~~q~~~~~~~tv~~~l------------------------------------------LS~G~~qrv~la~al~~~p~~ 117 (173)
T cd03246 80 YLPQDDELFSGSIAENI------------------------------------------LSGGQRQRLGLARALYGNPRI 117 (173)
T ss_pred EECCCCccccCcHHHHC------------------------------------------cCHHHHHHHHHHHHHhcCCCE
Confidence 99999999999999998 999999999999999999999
Q ss_pred EEeeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEecCchhhhccCEEEEEeCCEE
Q 001411 995 LLLDEATSALDTASENLIQEALDKLM-EGRTTIMVAHRLSTIRNADKIAVLQQGKV 1049 (1082)
Q Consensus 995 LlLDEaTS~LD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~~~DrI~Vl~~G~i 1049 (1082)
|||||||++||+.+.+.+.+.|++.. +++|+|++||+++.+..||+|++|++|++
T Consensus 118 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~d~v~~l~~G~i 173 (173)
T cd03246 118 LVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPETLASADRILVLEDGRV 173 (173)
T ss_pred EEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhCCEEEEEECCCC
Confidence 99999999999999999999999875 47899999999999988999999999974
|
They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra |
| >PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-40 Score=364.14 Aligned_cols=227 Identities=27% Similarity=0.438 Sum_probs=185.6
Q ss_pred cEEEEeEEEECCCCCCcccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcc-----CCCCCHHH
Q 001411 834 NIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYD-----IRTLNLRS 908 (1082)
Q Consensus 834 ~I~~~~Vs~~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~d-----i~~i~~~~ 908 (1082)
.|+++||+++|+ +.++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.+ +.+.+...
T Consensus 6 ~l~~~~l~~~~~---~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~i~~~~~~~ 82 (258)
T PRK11701 6 LLSVRGLTKLYG---PRKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEAE 82 (258)
T ss_pred eEEEeeeEEEcC---CceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCccccccccccCCHHH
Confidence 489999999996 3469999999999999999999999999999999999999999999999998 87776554
Q ss_pred ----HhcceEEEcccCc--cc-cccHHHHhccCC---CCCCHHHHHHHHHHhcHHHHHhhCccccc-ccccCCCCCCChh
Q 001411 909 ----LRRKIGLVQQEPA--LF-STTIYENIKYGN---EDASEIELMKATKAANAHGFISRMPEGYQ-SHVGDRGVQLSGG 977 (1082)
Q Consensus 909 ----lR~~i~~VpQdp~--Lf-~gTIreNl~~~~---~~~~d~ei~~al~~a~l~~~i~~lp~gld-t~v~e~G~~LSgG 977 (1082)
+|+.++|+||++. ++ ..|+.+|+.+.. ......++.+ .+.++++.+ |++ +.....+.+||||
T Consensus 83 ~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~~LS~G 155 (258)
T PRK11701 83 RRRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGDIRA-----TAGDWLERV--EIDAARIDDLPTTFSGG 155 (258)
T ss_pred HHHHhhcceEEEeeCcccccCccccHHHHHHHHHHHhccCcHHHHHH-----HHHHHHHHc--CCChhHHhCCCccCCHH
Confidence 3667999999984 33 348888875421 1111112211 234455554 333 3455667889999
Q ss_pred HHHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHhcC--CceEEEEecCchhhhc-cCEEEEEeCCEEEEecC
Q 001411 978 QKQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLME--GRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGS 1054 (1082)
Q Consensus 978 QrQrlaLARAlL~~~~ILlLDEaTS~LD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~G~ 1054 (1082)
||||++|||||+++|+||||||||++||+.+.+.+.+.|++..+ +.|+|+|||+++.+.. ||+|++|++|++++.|+
T Consensus 156 q~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~~~~~~~~d~i~~l~~g~i~~~~~ 235 (258)
T PRK11701 156 MQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLAHRLLVMKQGRVVESGL 235 (258)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999999999998653 7899999999999975 99999999999999999
Q ss_pred hHHHhhhccchHHHHH
Q 001411 1055 HEQLLRKENGIYKQLI 1070 (1082)
Q Consensus 1055 ~~eLl~~~~g~f~~l~ 1070 (1082)
++++..++...|.+.+
T Consensus 236 ~~~~~~~~~~~~~~~~ 251 (258)
T PRK11701 236 TDQVLDDPQHPYTQLL 251 (258)
T ss_pred HHHHhcCCCCHHHHHH
Confidence 9999865544565443
|
|
| >PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-40 Score=366.94 Aligned_cols=229 Identities=25% Similarity=0.406 Sum_probs=189.5
Q ss_pred cEEEEeEEEECCCCCCcccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCC---ccEEEECCccCCCC-----C
Q 001411 834 NIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPI---SGTVLIDGYDIRTL-----N 905 (1082)
Q Consensus 834 ~I~~~~Vs~~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~---~G~I~idG~di~~i-----~ 905 (1082)
.|+++||+++|+ +.++|+|+||+|++||+++|+|+||||||||+++|.|+++|+ +|+|.+||.++... +
T Consensus 4 ~l~~~nl~~~~~---~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~~ 80 (262)
T PRK09984 4 IIRVEKLAKTFN---QHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARD 80 (262)
T ss_pred EEEEeeEEEEeC---CeEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccchh
Confidence 489999999996 346999999999999999999999999999999999999986 49999999998654 2
Q ss_pred HHHHhcceEEEcccCcccc-ccHHHHhccCCCC--------------CCHHHHHHHHHHhcHHHHHhhCcccccccccCC
Q 001411 906 LRSLRRKIGLVQQEPALFS-TTIYENIKYGNED--------------ASEIELMKATKAANAHGFISRMPEGYQSHVGDR 970 (1082)
Q Consensus 906 ~~~lR~~i~~VpQdp~Lf~-gTIreNl~~~~~~--------------~~d~ei~~al~~a~l~~~i~~lp~gldt~v~e~ 970 (1082)
...+|++++|+||++.+|. .|+++|+.++... ...+++.++++..++.+.. ...
T Consensus 81 ~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~ 149 (262)
T PRK09984 81 IRKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFA-----------HQR 149 (262)
T ss_pred HHHHHhheEEEccccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHH-----------hCC
Confidence 4567889999999999887 5999999864211 0122345555555554433 334
Q ss_pred CCCCChhHHHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHhc--CCceEEEEecCchhhh-ccCEEEEEeCC
Q 001411 971 GVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLM--EGRTTIMVAHRLSTIR-NADKIAVLQQG 1047 (1082)
Q Consensus 971 G~~LSgGQrQrlaLARAlL~~~~ILlLDEaTS~LD~~te~~I~~~l~~~~--~~~TvI~IaHrl~ti~-~~DrI~Vl~~G 1047 (1082)
...||||||||++||||++.+|++|||||||++||+.+.+.+.+.|++.. +++|+|+|||+++.+. .||+|++|++|
T Consensus 150 ~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~~~~~~~d~i~~l~~g 229 (262)
T PRK09984 150 VSTLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVDYALRYCERIVALRQG 229 (262)
T ss_pred ccccCHHHHHHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 46799999999999999999999999999999999999999999999875 3789999999999875 59999999999
Q ss_pred EEEEecChHHHhhhccchHHHHHHHhhccCCc
Q 001411 1048 KVAEIGSHEQLLRKENGIYKQLIRLQQDKNPE 1079 (1082)
Q Consensus 1048 ~ive~G~~~eLl~~~~g~f~~l~~~~~~~~~~ 1079 (1082)
++++.|+++++ . +....+++.......++
T Consensus 230 ~i~~~g~~~~~-~--~~~~~~~~~~~~~~~~~ 258 (262)
T PRK09984 230 HVFYDGSSQQF-D--NERFDHLYRSINRVEEN 258 (262)
T ss_pred EEEEeCCHHHh-c--cHHHHHHHhhhhccccc
Confidence 99999999997 2 24567777665544443
|
|
| >TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-41 Score=364.00 Aligned_cols=216 Identities=29% Similarity=0.519 Sum_probs=181.8
Q ss_pred EEEEEEEEECCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHHhCCCCCCcEEEECCeeCCCCCHHHHhhhceE
Q 001411 206 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGL 285 (1082)
Q Consensus 206 i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 285 (1082)
++++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+... ++.++|
T Consensus 2 l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~~~~~~~-~~~i~~ 78 (236)
T TIGR03864 2 LEVAGLSFAYGA--RRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPRAA-LARLGV 78 (236)
T ss_pred EEEEeeEEEECC--EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccCChhh-hhhEEE
Confidence 689999999974 34999999999999999999999999999999999999999999999999987665544 458999
Q ss_pred EccCCCcC-hhcHHHHHhcCCCC--CCHHHHHHHHHHhchHHHHhcCCCCccccccCCCCCCChHHHHHHHHHHhcccCC
Q 001411 286 VSQEPALF-ATSIANNILLGKED--ASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNP 362 (1082)
Q Consensus 286 v~Q~~~l~-~~ti~~ni~~g~~~--~~~~~~~~~~~~~~~~~~i~~lp~g~~t~~g~~g~~LSgGqkqri~lARal~~~~ 362 (1082)
++|++.++ ..|++||+.++... ...++..+ .+.+.++.+ |++........+||||||||++|||||+.+|
T Consensus 79 ~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--gl~~~~~~~~~~LS~G~~qrl~laral~~~p 151 (236)
T TIGR03864 79 VFQQPTLDLDLSVRQNLRYHAALHGLSRAEARE-----RIAALLARL--GLAERADDKVRELNGGHRRRVEIARALLHRP 151 (236)
T ss_pred eCCCCCCcccCcHHHHHHHHHHhcCCCHHHHHH-----HHHHHHHHc--CChhhhcCChhhCCHHHHHHHHHHHHHhcCC
Confidence 99999874 56999999875321 11111111 112333333 5555566777899999999999999999999
Q ss_pred CeeEEeCcccCCCHHHHHHHHHHHHHHc--CCCeEEEEccCccccccCCEEEEEeCCEEEEecCchhhhhc
Q 001411 363 KILLLDEATSALDAESELIVQRALEKIM--SNRTTIVVAHRLSTVRDVDTIMVLKNGQVVESGTHVDLISK 431 (1082)
Q Consensus 363 ~illlDEpts~LD~~~~~~i~~~l~~~~--~~~t~i~vtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~ 431 (1082)
+++||||||++||+.+.+.+.+.|.++. +++|+|++||+++.+..||++++|++|++++.|+++++.+.
T Consensus 152 ~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 222 (236)
T TIGR03864 152 ALLLLDEPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVDEIEADDRLVVLHRGRVLADGAAAELRGA 222 (236)
T ss_pred CEEEEcCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChhhHhhCCEEEEEeCCeEEEeCCHHHHHHH
Confidence 9999999999999999999999999875 37899999999999888999999999999999998888764
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification. |
| >PRK13537 nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-41 Score=376.60 Aligned_cols=214 Identities=29% Similarity=0.494 Sum_probs=179.7
Q ss_pred CcEEEEEEEEECCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHHhCCCCCCcEEEECCeeCCCCCHHHHhhhc
Q 001411 204 GQIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQM 283 (1082)
Q Consensus 204 ~~i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i 283 (1082)
..++++|++++|++ ..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+ ...|++|
T Consensus 6 ~~i~i~~l~k~~~~--~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~~-~~~~~~i 82 (306)
T PRK13537 6 APIDFRNVEKRYGD--KLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRA-RHARQRV 82 (306)
T ss_pred ceEEEEeEEEEECC--eEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccch-HHHHhcE
Confidence 35999999999974 34999999999999999999999999999999999999999999999999987644 4578899
Q ss_pred eEEccCCCcCh-hcHHHHHhcCCCC--CCHHH----HHHHHHHhchHHHHhcCCCCccccccCCCCCCChHHHHHHHHHH
Q 001411 284 GLVSQEPALFA-TSIANNILLGKED--ASMDR----VIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIAR 356 (1082)
Q Consensus 284 ~~v~Q~~~l~~-~ti~~ni~~g~~~--~~~~~----~~~~~~~~~~~~~i~~lp~g~~t~~g~~g~~LSgGqkqri~lAR 356 (1082)
|||||++.++. .|++||+.+.... .+..+ +.++++.. .+++..++. ..+||||||||++|||
T Consensus 83 g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~-------~l~~~~~~~----~~~LS~G~~qrl~la~ 151 (306)
T PRK13537 83 GVVPQFDNLDPDFTVRENLLVFGRYFGLSAAAARALVPPLLEFA-------KLENKADAK----VGELSGGMKRRLTLAR 151 (306)
T ss_pred EEEeccCcCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHc-------CCchHhcCc----hhhCCHHHHHHHHHHH
Confidence 99999999886 4999999853221 12222 22222222 233333333 3579999999999999
Q ss_pred hcccCCCeeEEeCcccCCCHHHHHHHHHHHHHHc-CCCeEEEEccCcccccc-CCEEEEEeCCEEEEecCchhhhhc
Q 001411 357 AVLRNPKILLLDEATSALDAESELIVQRALEKIM-SNRTTIVVAHRLSTVRD-VDTIMVLKNGQVVESGTHVDLISK 431 (1082)
Q Consensus 357 al~~~~~illlDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 431 (1082)
||+.+|++++|||||++||+.+.+.+++.|+++. +++|+|++||+++.+.. ||+|++|++|++++.|+++++.+.
T Consensus 152 aL~~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~till~sH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~~~ 228 (306)
T PRK13537 152 ALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFMEEAERLCDRLCVIEEGRKIAEGAPHALIES 228 (306)
T ss_pred HHhCCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhc
Confidence 9999999999999999999999999999999885 47899999999999865 999999999999999999988654
|
|
| >cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-41 Score=364.53 Aligned_cols=216 Identities=29% Similarity=0.473 Sum_probs=181.2
Q ss_pred EEEEEEEEECCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHHhCCCCCCcEEEECCeeCCCCCHHHH-hhhce
Q 001411 206 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWL-REQMG 284 (1082)
Q Consensus 206 i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~-~~~i~ 284 (1082)
++++|++++|+++ .+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+ ++.++
T Consensus 1 l~~~~l~~~~~~~--~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~ 78 (232)
T cd03218 1 LRAENLSKRYGKR--KVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARLGIG 78 (232)
T ss_pred CeEEEEEEEeCCE--EeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccCCHhHHHhccEE
Confidence 4789999999743 49999999999999999999999999999999999999999999999999877665543 56799
Q ss_pred EEccCCCcChh-cHHHHHhcCCCCC--CHHHHHHHHHHhchHHHHhcCCCCccccccCCCCCCChHHHHHHHHHHhcccC
Q 001411 285 LVSQEPALFAT-SIANNILLGKEDA--SMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRN 361 (1082)
Q Consensus 285 ~v~Q~~~l~~~-ti~~ni~~g~~~~--~~~~~~~~~~~~~~~~~i~~lp~g~~t~~g~~g~~LSgGqkqri~lARal~~~ 361 (1082)
|++|++.+|+. |++||+.++.+.. ..++..+ .+.+.++.+ |++........+||||||||++||||++.+
T Consensus 79 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrl~la~al~~~ 151 (232)
T cd03218 79 YLPQEASIFRKLTVEENILAVLEIRGLSKKEREE-----KLEELLEEF--HITHLRKSKASSLSGGERRRVEIARALATN 151 (232)
T ss_pred EecCCccccccCcHHHHHHHHHHhcCCCHHHHHH-----HHHHHHHHc--CChhhhhCChhhCCHHHHHHHHHHHHHhcC
Confidence 99999999987 9999998753211 1111111 122334443 555556667789999999999999999999
Q ss_pred CCeeEEeCcccCCCHHHHHHHHHHHHHHc-CCCeEEEEccCccccc-cCCEEEEEeCCEEEEecCchhhhh
Q 001411 362 PKILLLDEATSALDAESELIVQRALEKIM-SNRTTIVVAHRLSTVR-DVDTIMVLKNGQVVESGTHVDLIS 430 (1082)
Q Consensus 362 ~~illlDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~vtH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~ 430 (1082)
|++|||||||++||+.+.+.+.+.|+++. +++|+|++||+++.+. .||+|++|++|++++.|+++++..
T Consensus 152 p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 222 (232)
T cd03218 152 PKFLLLDEPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNVRETLSITDRAYIIYEGKVLAEGTPEEIAA 222 (232)
T ss_pred CCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEEeCHHHhhc
Confidence 99999999999999999999999998875 4789999999998765 489999999999999999887754
|
The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. |
| >PRK11144 modC molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-41 Score=381.30 Aligned_cols=212 Identities=31% Similarity=0.496 Sum_probs=184.4
Q ss_pred EEEEeEEEECCCCCCcccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCccCCCC----CHHHHh
Q 001411 835 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTL----NLRSLR 910 (1082)
Q Consensus 835 I~~~~Vs~~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i----~~~~lR 910 (1082)
|++ |++++|+. . .+ |+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++... +....|
T Consensus 2 l~~-~l~k~~~~---~-~~-~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~~~~~~~~~~~~~~~ 75 (352)
T PRK11144 2 LEL-NFKQQLGD---L-CL-TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEK 75 (352)
T ss_pred eEE-EEEEEeCC---E-EE-EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccchhh
Confidence 677 99999962 2 23 99999999999999999999999999999999999999999999998653 244568
Q ss_pred cceEEEcccCcccc-ccHHHHhccCCCCCCHHHHHHHHHHhcHHHHHhhCcccccccccCCCCCCChhHHHHHHHHHHHc
Q 001411 911 RKIGLVQQEPALFS-TTIYENIKYGNEDASEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAIL 989 (1082)
Q Consensus 911 ~~i~~VpQdp~Lf~-gTIreNl~~~~~~~~d~ei~~al~~a~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlaLARAlL 989 (1082)
++++||||++.+|+ .|+++|+.++.....++++.++++..++.++..+ ...+||||||||++|||||+
T Consensus 76 ~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~l~~~gl~~~~~~-----------~~~~LSgGq~qRvalaraL~ 144 (352)
T PRK11144 76 RRIGYVFQDARLFPHYKVRGNLRYGMAKSMVAQFDKIVALLGIEPLLDR-----------YPGSLSGGEKQRVAIGRALL 144 (352)
T ss_pred CCEEEEcCCcccCCCCcHHHHHHhhhhhhhHHHHHHHHHHcCCchhhhC-----------CcccCCHHHHHHHHHHHHHH
Confidence 89999999999996 5999999986544445667777777776555443 33679999999999999999
Q ss_pred cCCCEEEeeCCCCCCCHHHHHHHHHHHHHhcC--CceEEEEecCchhhhc-cCEEEEEeCCEEEEecChHHHhhhcc
Q 001411 990 KNPSILLLDEATSALDTASENLIQEALDKLME--GRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGSHEQLLRKEN 1063 (1082)
Q Consensus 990 ~~~~ILlLDEaTS~LD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~G~~~eLl~~~~ 1063 (1082)
++|++||||||||+||+.+.+.+.+.|++..+ ++|+|+|||+++.+.. ||+|++|++|++++.|+|+++..++.
T Consensus 145 ~~p~llLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tii~vTHd~~~~~~~~d~i~~l~~G~i~~~g~~~~i~~~p~ 221 (352)
T PRK11144 145 TAPELLLMDEPLASLDLPRKRELLPYLERLAREINIPILYVSHSLDEILRLADRVVVLEQGKVKAFGPLEEVWASSA 221 (352)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEeCCEEEEecCHHHHHhCcc
Confidence 99999999999999999999999999998753 6899999999998865 99999999999999999999987654
|
|
| >cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-41 Score=360.50 Aligned_cols=212 Identities=35% Similarity=0.556 Sum_probs=173.2
Q ss_pred EEEEeEEEECCCCC-CcccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCccCCCCCH---HHHh
Q 001411 835 IELRNVSFKYPVRP-DITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNL---RSLR 910 (1082)
Q Consensus 835 I~~~~Vs~~Y~~~~-~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~---~~lR 910 (1082)
|+++||+++|+.+. +.++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.+.+. ..+|
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (228)
T cd03257 2 LEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIRR 81 (228)
T ss_pred eEEEeeeEeccCCCcceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccchhhHHHhh
Confidence 78999999996321 1269999999999999999999999999999999999999999999999999988774 5778
Q ss_pred cceEEEcccC--ccc-cccHHHHhccCC----CCCCHHHHHHHHHHhcHHHHHhhCccccc-ccccCCCCCCChhHHHHH
Q 001411 911 RKIGLVQQEP--ALF-STTIYENIKYGN----EDASEIELMKATKAANAHGFISRMPEGYQ-SHVGDRGVQLSGGQKQRV 982 (1082)
Q Consensus 911 ~~i~~VpQdp--~Lf-~gTIreNl~~~~----~~~~d~ei~~al~~a~l~~~i~~lp~gld-t~v~e~G~~LSgGQrQrl 982 (1082)
++++|+||+| .++ ..|+++|+.++. +...+++...+. .+.++.+ |++ ........+||||||||+
T Consensus 82 ~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~-----~~~l~~~--~l~~~~~~~~~~~LS~G~~qrv 154 (228)
T cd03257 82 KEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEAV-----LLLLVGV--GLPEEVLNRYPHELSGGQRQRV 154 (228)
T ss_pred ccEEEEecCchhhcCCcCCHHHHHHHHHHhccCCcHHHHHHHHH-----HHHHHHC--CCChhHhhCCchhcCHHHHHHH
Confidence 9999999999 344 579999997531 111111111110 1222222 332 234455578999999999
Q ss_pred HHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHhcC--CceEEEEecCchhhh-ccCEEEEEeCCEEEEec
Q 001411 983 AIARAILKNPSILLLDEATSALDTASENLIQEALDKLME--GRTTIMVAHRLSTIR-NADKIAVLQQGKVAEIG 1053 (1082)
Q Consensus 983 aLARAlL~~~~ILlLDEaTS~LD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~-~~DrI~Vl~~G~ive~G 1053 (1082)
+|||||+.+|+||||||||++||+.+.+.+.+.|++..+ ++|+|++||+++.+. .||+|++|++|++++.|
T Consensus 155 ~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g 228 (228)
T cd03257 155 AIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLGVVAKIADRVAVMYAGKIVEEG 228 (228)
T ss_pred HHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEeCCEEEecC
Confidence 999999999999999999999999999999999998754 789999999999997 49999999999998865
|
The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. |
| >PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-41 Score=368.56 Aligned_cols=213 Identities=30% Similarity=0.537 Sum_probs=181.2
Q ss_pred EEEEEEEEECCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHHhCCCCCCcEEEECCeeCCCCC-HHHHhhhce
Q 001411 206 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQ-LKWLREQMG 284 (1082)
Q Consensus 206 i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~-~~~~~~~i~ 284 (1082)
++++|++++|++. ..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+ ...+++.++
T Consensus 2 l~~~~l~~~~~~~-~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~ 80 (274)
T PRK13644 2 IRLENVSYSYPDG-TPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRKLVG 80 (274)
T ss_pred EEEEEEEEEcCCC-CceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEECCccccHHHHHhheE
Confidence 6899999999632 34999999999999999999999999999999999999999999999999987765 356788899
Q ss_pred EEccCCC--cChhcHHHHHhcCCCC--CCH----HHHHHHHHHhchHHHHhcCCCCccccccCCCCCCChHHHHHHHHHH
Q 001411 285 LVSQEPA--LFATSIANNILLGKED--ASM----DRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIAR 356 (1082)
Q Consensus 285 ~v~Q~~~--l~~~ti~~ni~~g~~~--~~~----~~~~~~~~~~~~~~~i~~lp~g~~t~~g~~g~~LSgGqkqri~lAR 356 (1082)
|++|+|. +++.|++|||.++... .+. +++.++++..+ ++.........||||||||++|||
T Consensus 81 ~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~g-----------l~~~~~~~~~~LS~G~~qrv~lar 149 (274)
T PRK13644 81 IVFQNPETQFVGRTVEEDLAFGPENLCLPPIEIRKRVDRALAEIG-----------LEKYRHRSPKTLSGGQGQCVALAG 149 (274)
T ss_pred EEEEChhhhcccchHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCC-----------CHHHhcCCcccCCHHHHHHHHHHH
Confidence 9999985 5677999999876421 122 22333333333 333344555789999999999999
Q ss_pred hcccCCCeeEEeCcccCCCHHHHHHHHHHHHHHc-CCCeEEEEccCccccccCCEEEEEeCCEEEEecCchhhhh
Q 001411 357 AVLRNPKILLLDEATSALDAESELIVQRALEKIM-SNRTTIVVAHRLSTVRDVDTIMVLKNGQVVESGTHVDLIS 430 (1082)
Q Consensus 357 al~~~~~illlDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~vtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 430 (1082)
||+.+|+++||||||++||+.+...+.+.++++. ++.|+|++||+++.+..||+|++|++|++++.|+++++..
T Consensus 150 al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~~tH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 224 (274)
T PRK13644 150 ILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHNLEELHDADRIIVMDRGKIVLEGEPENVLS 224 (274)
T ss_pred HHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHhhCCEEEEEECCEEEEECCHHHHhc
Confidence 9999999999999999999999999999998875 4789999999999998899999999999999999888754
|
|
| >PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-41 Score=369.56 Aligned_cols=216 Identities=30% Similarity=0.527 Sum_probs=185.1
Q ss_pred cEEEEEEEEECCCCC-CccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHHhCCCCCCcEEEECCeeCCCCCHHHHhhhc
Q 001411 205 QIEFSEVCFAYPSRP-HMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQM 283 (1082)
Q Consensus 205 ~i~~~~v~~~y~~~~-~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i 283 (1082)
.++++|++++|++.. .++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.++...+...+++.+
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~i 83 (277)
T PRK13642 4 ILEVENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRRKI 83 (277)
T ss_pred eEEEEEEEEEcCCCCcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEECCcCCHHHHhcce
Confidence 489999999997432 3499999999999999999999999999999999999999999999999999877777788899
Q ss_pred eEEccCCC--cChhcHHHHHhcCCC--CCCHH----HHHHHHHHhchHHHHhcCCCCccccccCCCCCCChHHHHHHHHH
Q 001411 284 GLVSQEPA--LFATSIANNILLGKE--DASMD----RVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIA 355 (1082)
Q Consensus 284 ~~v~Q~~~--l~~~ti~~ni~~g~~--~~~~~----~~~~~~~~~~~~~~i~~lp~g~~t~~g~~g~~LSgGqkqri~lA 355 (1082)
+|++|+|. ++..|+.|||.++.. ....+ ++.++++..++.+... .....||||||||++||
T Consensus 84 ~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrv~lA 152 (277)
T PRK13642 84 GMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKRVDEALLAVNMLDFKT-----------REPARLSGGQKQRVAVA 152 (277)
T ss_pred EEEEECHHHhhccCCHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHhHhh-----------CCcccCCHHHHHHHHHH
Confidence 99999984 667799999987532 11222 3344555555544333 34468999999999999
Q ss_pred HhcccCCCeeEEeCcccCCCHHHHHHHHHHHHHHcC--CCeEEEEccCccccccCCEEEEEeCCEEEEecCchhhhhc
Q 001411 356 RAVLRNPKILLLDEATSALDAESELIVQRALEKIMS--NRTTIVVAHRLSTVRDVDTIMVLKNGQVVESGTHVDLISK 431 (1082)
Q Consensus 356 Ral~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~vtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~ 431 (1082)
|||+.+|+++||||||++||+.+.+.+.+.|.++.+ ++|+|++||+++.+..||+|++|++|++++.|+++++...
T Consensus 153 raL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 230 (277)
T PRK13642 153 GIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDEAASSDRILVMKAGEIIKEAAPSELFAT 230 (277)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 999999999999999999999999999999998754 7899999999999888999999999999999999988754
|
|
| >COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-41 Score=338.97 Aligned_cols=221 Identities=27% Similarity=0.456 Sum_probs=190.2
Q ss_pred cEEEEEEEEECCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHHhCCCCCCcEEEECCeeCCCCCHHHH-hhhc
Q 001411 205 QIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWL-REQM 283 (1082)
Q Consensus 205 ~i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~-~~~i 283 (1082)
-++++|++..|+. ..+|++|||++++||+++|+|+||+|||||+++|+|+.+|.+|+|.++|+|++..++... |..|
T Consensus 3 mL~v~~l~~~YG~--~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~~p~~~r~r~Gi 80 (237)
T COG0410 3 MLEVENLSAGYGK--IQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERARLGI 80 (237)
T ss_pred ceeEEeEeecccc--eeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCCCCHHHHHhCCe
Confidence 4789999999975 349999999999999999999999999999999999999999999999999999987664 6679
Q ss_pred eEEccCCCcChh-cHHHHHhcCCCCCCHHHHHHHHHHhchHHHHhcCCCCccccccCCCCCCChHHHHHHHHHHhcccCC
Q 001411 284 GLVSQEPALFAT-SIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNP 362 (1082)
Q Consensus 284 ~~v~Q~~~l~~~-ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~lp~g~~t~~g~~g~~LSgGqkqri~lARal~~~~ 362 (1082)
+||||.-.+|+. ||+||+.+|......++. ....+++..+-+| -+......++.+|||||+|.+||||||..+|
T Consensus 81 ~~VPegR~iF~~LTVeENL~~g~~~~~~~~~----~~~~~e~v~~lFP-~Lker~~~~aG~LSGGEQQMLAiaRALm~~P 155 (237)
T COG0410 81 AYVPEGRRIFPRLTVEENLLLGAYARRDKEA----QERDLEEVYELFP-RLKERRNQRAGTLSGGEQQMLAIARALMSRP 155 (237)
T ss_pred EeCcccccchhhCcHHHHHhhhhhccccccc----ccccHHHHHHHCh-hHHHHhcCcccCCChHHHHHHHHHHHHhcCC
Confidence 999999999988 999999987433221111 1111223344455 4666778888999999999999999999999
Q ss_pred CeeEEeCcccCCCHHHHHHHHHHHHHHcC--CCeEEEEccCcccc-ccCCEEEEEeCCEEEEecCchhhhhcC
Q 001411 363 KILLLDEATSALDAESELIVQRALEKIMS--NRTTIVVAHRLSTV-RDVDTIMVLKNGQVVESGTHVDLISKG 432 (1082)
Q Consensus 363 ~illlDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~vtH~~~~~-~~~d~i~~l~~G~i~~~g~~~~l~~~~ 432 (1082)
++|+|||||.+|-|.-.+.|.+.|+++++ +.||++|-++.... +.+||.+||++|+|+.+|+.+||.++.
T Consensus 156 klLLLDEPs~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn~~~Al~iaDr~yvle~Griv~~G~~~eL~~~~ 228 (237)
T COG0410 156 KLLLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQNARFALEIADRGYVLENGRIVLSGTAAELLADP 228 (237)
T ss_pred CEEEecCCccCcCHHHHHHHHHHHHHHHHcCCcEEEEEeccHHHHHHhhCEEEEEeCCEEEEecCHHHHhcCH
Confidence 99999999999999999999999999874 56999999999876 458999999999999999999998763
|
|
| >PRK14267 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-41 Score=367.39 Aligned_cols=218 Identities=30% Similarity=0.454 Sum_probs=182.6
Q ss_pred cEEEEEEEEECCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHHhCCCC-----CCcEEEECCeeCC--CCCHH
Q 001411 205 QIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEP-----TSGKILLDGHDLK--SLQLK 277 (1082)
Q Consensus 205 ~i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~-----~~G~i~~~g~~~~--~~~~~ 277 (1082)
.++++|++++|++. ++|+|+||++++||+++|+||||||||||+++|+|+++| ++|+|.++|+++. ..+..
T Consensus 4 ~l~~~~l~~~~~~~--~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 81 (253)
T PRK14267 4 AIETVNLRVYYGSN--HVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDPI 81 (253)
T ss_pred eEEEEeEEEEeCCe--eeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccChH
Confidence 48999999999753 499999999999999999999999999999999999987 4999999999986 44556
Q ss_pred HHhhhceEEccCCCcChh-cHHHHHhcCCCC----CCH----HHHHHHHHHhchHHHHhcCCCCccccccCCCCCCChHH
Q 001411 278 WLREQMGLVSQEPALFAT-SIANNILLGKED----ASM----DRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQ 348 (1082)
Q Consensus 278 ~~~~~i~~v~Q~~~l~~~-ti~~ni~~g~~~----~~~----~~~~~~~~~~~~~~~i~~lp~g~~t~~g~~g~~LSgGq 348 (1082)
.+++.++|++|++.+|+. |++||+.++... ... +++.++++..++.+. ..........+|||||
T Consensus 82 ~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-------~~~~~~~~~~~LS~G~ 154 (253)
T PRK14267 82 EVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDE-------VKDRLNDYPSNLSGGQ 154 (253)
T ss_pred HHhhceeEEecCCccCCCCcHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCccc-------hhhhhccChhhCCHHH
Confidence 678899999999999976 999999875311 011 223333333333211 1223455677899999
Q ss_pred HHHHHHHHhcccCCCeeEEeCcccCCCHHHHHHHHHHHHHHcCCCeEEEEccCcccccc-CCEEEEEeCCEEEEecCchh
Q 001411 349 KQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRD-VDTIMVLKNGQVVESGTHVD 427 (1082)
Q Consensus 349 kqri~lARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~ 427 (1082)
|||++|||||+++|+++||||||++||+.+.+.+.+.|.++.+++|+|++||+++.+.. ||+|++|++|++++.|++++
T Consensus 155 ~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~ 234 (253)
T PRK14267 155 RQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKKEYTIVLVTHSPAQAARVSDYVAFLYLGKLIEVGPTRK 234 (253)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhhCCEEEEEECCHHHHHhhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999999988767899999999998764 89999999999999999998
Q ss_pred hhhc
Q 001411 428 LISK 431 (1082)
Q Consensus 428 l~~~ 431 (1082)
+...
T Consensus 235 ~~~~ 238 (253)
T PRK14267 235 VFEN 238 (253)
T ss_pred HHhC
Confidence 8654
|
|
| >COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-41 Score=337.39 Aligned_cols=221 Identities=30% Similarity=0.470 Sum_probs=187.8
Q ss_pred cEEEEeEEEECCCCCCcccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCccCCCCCHHH-Hhcc
Q 001411 834 NIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRS-LRRK 912 (1082)
Q Consensus 834 ~I~~~~Vs~~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~-lR~~ 912 (1082)
-++++||+..|. ...+|++|||++++||+++++||||+||||++++++|+.+|.+|+|.++|.||+..+++. .|..
T Consensus 3 mL~v~~l~~~YG---~~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~~p~~~r~r~G 79 (237)
T COG0410 3 MLEVENLSAGYG---KIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERARLG 79 (237)
T ss_pred ceeEEeEeeccc---ceeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCCCCHHHHHhCC
Confidence 378999999996 357999999999999999999999999999999999999999999999999999998876 5888
Q ss_pred eEEEcccCcccc-ccHHHHhccCCCCCCHHHHHHHHHHhcHHHHHhhCcccccccccCCCCCCChhHHHHHHHHHHHccC
Q 001411 913 IGLVQQEPALFS-TTIYENIKYGNEDASEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKN 991 (1082)
Q Consensus 913 i~~VpQdp~Lf~-gTIreNl~~~~~~~~d~ei~~al~~a~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlaLARAlL~~ 991 (1082)
|+||||...+|+ -||.|||..|.....+++-++ ..+.+.-+-+| -|.......+.+|||||+|-+||||||+.+
T Consensus 80 i~~VPegR~iF~~LTVeENL~~g~~~~~~~~~~~----~~~e~v~~lFP-~Lker~~~~aG~LSGGEQQMLAiaRALm~~ 154 (237)
T COG0410 80 IAYVPEGRRIFPRLTVEENLLLGAYARRDKEAQE----RDLEEVYELFP-RLKERRNQRAGTLSGGEQQMLAIARALMSR 154 (237)
T ss_pred eEeCcccccchhhCcHHHHHhhhhhccccccccc----ccHHHHHHHCh-hHHHHhcCcccCCChHHHHHHHHHHHHhcC
Confidence 999999999996 599999997632222211111 01122222334 244455667788999999999999999999
Q ss_pred CCEEEeeCCCCCCCHHHHHHHHHHHHHhcC--CceEEEEecCchhhhc-cCEEEEEeCCEEEEecChHHHhhhc
Q 001411 992 PSILLLDEATSALDTASENLIQEALDKLME--GRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGSHEQLLRKE 1062 (1082)
Q Consensus 992 ~~ILlLDEaTS~LD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~G~~~eLl~~~ 1062 (1082)
|++|+|||||.+|-|.--+.|.++|++..+ +.||+.|-++.....+ +||.+||++|+|+..|+.+||.+++
T Consensus 155 PklLLLDEPs~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn~~~Al~iaDr~yvle~Griv~~G~~~eL~~~~ 228 (237)
T COG0410 155 PKLLLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQNARFALEIADRGYVLENGRIVLSGTAAELLADP 228 (237)
T ss_pred CCEEEecCCccCcCHHHHHHHHHHHHHHHHcCCcEEEEEeccHHHHHHhhCEEEEEeCCEEEEecCHHHHhcCH
Confidence 999999999999999999999999999874 5699999999999865 9999999999999999999999753
|
|
| >TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-41 Score=359.70 Aligned_cols=208 Identities=30% Similarity=0.521 Sum_probs=170.9
Q ss_pred EEEEEEEEECCCCC--CccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHHhCCCCCCcEEEECCeeCCCCCHHH---Hh
Q 001411 206 IEFSEVCFAYPSRP--HMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKW---LR 280 (1082)
Q Consensus 206 i~~~~v~~~y~~~~--~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~---~~ 280 (1082)
++++|++++|++.. .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+... +|
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (221)
T TIGR02211 2 LKCENLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAKLR 81 (221)
T ss_pred EEEEeeeEEccCCCcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCHhHHHHHH
Confidence 68999999996422 34999999999999999999999999999999999999999999999999988776543 33
Q ss_pred -hhceEEccCCCcChh-cHHHHHhcCCC--CCCHHHHHHHHHHhchHHHHhcCCCCccccccCCCCCCChHHHHHHHHHH
Q 001411 281 -EQMGLVSQEPALFAT-SIANNILLGKE--DASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIAR 356 (1082)
Q Consensus 281 -~~i~~v~Q~~~l~~~-ti~~ni~~g~~--~~~~~~~~~~~~~~~~~~~i~~lp~g~~t~~g~~g~~LSgGqkqri~lAR 356 (1082)
+.++|++|++.+|+. |++||+.++.. .....+..+. +.+.++.+ |++.........||||||||++|||
T Consensus 82 ~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~-----~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~lar 154 (221)
T TIGR02211 82 NKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEAKER-----AYEMLEKV--GLEHRINHRPSELSGGERQRVAIAR 154 (221)
T ss_pred HhcEEEEecccccCCCCcHHHHHHHHHHhcCCCHHHHHHH-----HHHHHHHc--CChhhhhCChhhCCHHHHHHHHHHH
Confidence 679999999998864 99999987421 1111111111 11223332 4444445556789999999999999
Q ss_pred hcccCCCeeEEeCcccCCCHHHHHHHHHHHHHHc--CCCeEEEEccCccccccCCEEEEEeCCEEE
Q 001411 357 AVLRNPKILLLDEATSALDAESELIVQRALEKIM--SNRTTIVVAHRLSTVRDVDTIMVLKNGQVV 420 (1082)
Q Consensus 357 al~~~~~illlDEpts~LD~~~~~~i~~~l~~~~--~~~t~i~vtH~~~~~~~~d~i~~l~~G~i~ 420 (1082)
||+.+|++|||||||++||+.+...+.+.|.++. .++|+|++||+++.+..+|+|++|++|+++
T Consensus 155 al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~d~v~~l~~G~i~ 220 (221)
T TIGR02211 155 ALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLELAKKLDRVLEMKDGQLF 220 (221)
T ss_pred HHhCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhhcCEEEEEeCCEec
Confidence 9999999999999999999999999999999875 368999999999998889999999999975
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina. |
| >cd03299 ABC_ModC_like Archeal protein closely related to ModC | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-40 Score=360.59 Aligned_cols=211 Identities=36% Similarity=0.609 Sum_probs=182.9
Q ss_pred EEEEeEEEECCCCCCcccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCccCCCCCHHHHhcceE
Q 001411 835 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRKIG 914 (1082)
Q Consensus 835 I~~~~Vs~~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR~~i~ 914 (1082)
|+++|++++|+ + ++|+|+||+|+|||++||+|+||||||||+++|.|+++|++|+|.+||.++...+. .|++++
T Consensus 1 l~~~~l~~~~~---~-~~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~~G~v~i~g~~~~~~~~--~~~~i~ 74 (235)
T cd03299 1 LKVENLSKDWK---E-FKLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPP--EKRDIS 74 (235)
T ss_pred CeeEeEEEEeC---C-ceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcCcCCh--hHcCEE
Confidence 47899999996 2 37999999999999999999999999999999999999999999999999987654 378999
Q ss_pred EEcccCcccc-ccHHHHhccCCCC--C----CHHHHHHHHHHhcHHHHHhhCcccccccccCCCCCCChhHHHHHHHHHH
Q 001411 915 LVQQEPALFS-TTIYENIKYGNED--A----SEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARA 987 (1082)
Q Consensus 915 ~VpQdp~Lf~-gTIreNl~~~~~~--~----~d~ei~~al~~a~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlaLARA 987 (1082)
|+||++.+|. .|+++|+.++... . .++++.++++..++.+++.+. ...||||||||++||||
T Consensus 75 ~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LS~G~~qrl~lara 143 (235)
T cd03299 75 YVPQNYALFPHMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGIDHLLNRK-----------PETLSGGEQQRVAIARA 143 (235)
T ss_pred EEeecCccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHHhcC-----------cccCCHHHHHHHHHHHH
Confidence 9999999995 7999999864221 1 123456667777766554433 35799999999999999
Q ss_pred HccCCCEEEeeCCCCCCCHHHHHHHHHHHHHhcC--CceEEEEecCchhhhc-cCEEEEEeCCEEEEecChHHHhhhc
Q 001411 988 ILKNPSILLLDEATSALDTASENLIQEALDKLME--GRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGSHEQLLRKE 1062 (1082)
Q Consensus 988 lL~~~~ILlLDEaTS~LD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~G~~~eLl~~~ 1062 (1082)
++++|++|+|||||++||+.+.+.+.+.|++..+ ++|+|++||+++.+.. ||+|++|++|++++.|+++++.+.+
T Consensus 144 l~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~~~tili~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~ 221 (235)
T cd03299 144 LVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDFEEAWALADKVAIMLNGKLIQVGKPEEVFKKP 221 (235)
T ss_pred HHcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHHhCc
Confidence 9999999999999999999999999999998653 8999999999999875 9999999999999999999998643
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-41 Score=359.88 Aligned_cols=210 Identities=30% Similarity=0.492 Sum_probs=180.0
Q ss_pred cEEEEeEEEECCCCCCcccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCccCCCCCHHHHhcce
Q 001411 834 NIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRKI 913 (1082)
Q Consensus 834 ~I~~~~Vs~~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR~~i 913 (1082)
.|+++||+++|+ +.++++|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+...+|+++
T Consensus 7 ~i~~~~l~~~~~---~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 83 (225)
T PRK10247 7 LLQLQNVGYLAG---DAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYRQQV 83 (225)
T ss_pred eEEEeccEEeeC---CceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcCcCCHHHHHhcc
Confidence 499999999996 34699999999999999999999999999999999999999999999999999988888889999
Q ss_pred EEEcccCccccccHHHHhccCC---CC-CCHHHHHHHHHHhcHHHHHhhCcccccccccCCCCCCChhHHHHHHHHHHHc
Q 001411 914 GLVQQEPALFSTTIYENIKYGN---ED-ASEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAIL 989 (1082)
Q Consensus 914 ~~VpQdp~Lf~gTIreNl~~~~---~~-~~d~ei~~al~~a~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlaLARAlL 989 (1082)
+|+||++.+|+.|+++|+.++. .. ..++++.+.++..++.+ +.......+||||||||++|||||+
T Consensus 84 ~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~~LS~G~~qrv~laral~ 153 (225)
T PRK10247 84 SYCAQTPTLFGDTVYDNLIFPWQIRNQQPDPAIFLDDLERFALPD----------TILTKNIAELSGGEKQRISLIRNLQ 153 (225)
T ss_pred EEEecccccccccHHHHHHhHHhhcCCChHHHHHHHHHHHcCCCh----------HHhcCCcccCCHHHHHHHHHHHHHh
Confidence 9999999999999999997531 11 11223334444444421 2334456789999999999999999
Q ss_pred cCCCEEEeeCCCCCCCHHHHHHHHHHHHHhcC--CceEEEEecCchhhhccCEEEEEe-CCEEEEecChH
Q 001411 990 KNPSILLLDEATSALDTASENLIQEALDKLME--GRTTIMVAHRLSTIRNADKIAVLQ-QGKVAEIGSHE 1056 (1082)
Q Consensus 990 ~~~~ILlLDEaTS~LD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~~~DrI~Vl~-~G~ive~G~~~ 1056 (1082)
++|+++||||||++||+.+.+.+.+.|++..+ ++|+|+|||+++.+..||+|++|+ ++..+++|+|+
T Consensus 154 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~~~~~~d~i~~l~~~~~~~~~~~~~ 223 (225)
T PRK10247 154 FMPKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKDEINHADKVITLQPHAGEMQEARYE 223 (225)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChHHHHhCCEEEEEecccchHhhhhhc
Confidence 99999999999999999999999999998753 789999999999998899999995 56667788885
|
|
| >cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-41 Score=359.02 Aligned_cols=201 Identities=34% Similarity=0.575 Sum_probs=170.4
Q ss_pred EEEEeEEEECCCCCCcccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCccCCC--CCHHHHhcc
Q 001411 835 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRT--LNLRSLRRK 912 (1082)
Q Consensus 835 I~~~~Vs~~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~--i~~~~lR~~ 912 (1082)
|+++||+++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.. .+...+|++
T Consensus 1 l~~~~l~~~~~~---~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 77 (213)
T cd03262 1 IEIKNLHKSFGD---FHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINELRQK 77 (213)
T ss_pred CEEEEEEEEECC---eEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccchhHHHHHhc
Confidence 478999999963 469999999999999999999999999999999999999999999999999853 455678899
Q ss_pred eEEEcccCcccc-ccHHHHhccCCC---CCCHH----HHHHHHHHhcHHHHHhhCcccccccccCCCCCCChhHHHHHHH
Q 001411 913 IGLVQQEPALFS-TTIYENIKYGNE---DASEI----ELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAI 984 (1082)
Q Consensus 913 i~~VpQdp~Lf~-gTIreNl~~~~~---~~~d~----ei~~al~~a~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlaL 984 (1082)
++|+||+|.+|+ .|++||+.++.. ..+.+ ++.++++..++.+ .......+||||||||++|
T Consensus 78 i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LS~G~~qrv~l 146 (213)
T cd03262 78 VGMVFQQFNLFPHLTVLENITLAPIKVKGMSKAEAEERALELLEKVGLAD-----------KADAYPAQLSGGQQQRVAI 146 (213)
T ss_pred ceEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCCHh-----------HhhhCccccCHHHHHHHHH
Confidence 999999999986 699999976421 12222 2334444444433 3333446899999999999
Q ss_pred HHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEecCchhhhc-cCEEEEEeCCEE
Q 001411 985 ARAILKNPSILLLDEATSALDTASENLIQEALDKLM-EGRTTIMVAHRLSTIRN-ADKIAVLQQGKV 1049 (1082)
Q Consensus 985 ARAlL~~~~ILlLDEaTS~LD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~i 1049 (1082)
|||++++|++|||||||++||+.+.+.+.+.|++.. .++|+|++||+++.+.. ||+|++|++|++
T Consensus 147 a~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~~~~~~~~~d~i~~l~~g~i 213 (213)
T cd03262 147 ARALAMNPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMGFAREVADRVIFMDDGRI 213 (213)
T ss_pred HHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 999999999999999999999999999999999875 47899999999999965 999999999975
|
Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM |
| >PRK14264 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-40 Score=372.50 Aligned_cols=219 Identities=30% Similarity=0.534 Sum_probs=187.0
Q ss_pred ccEEEEeEEEECCCCCCcccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccc-----CCccEEEECCccCCCC--C
Q 001411 833 GNIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYD-----PISGTVLIDGYDIRTL--N 905 (1082)
Q Consensus 833 g~I~~~~Vs~~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~-----p~~G~I~idG~di~~i--~ 905 (1082)
..|+++||+++|+ +.++|+|+||+|++||++||+|+||||||||+++|+|+++ |++|+|.+||.++... +
T Consensus 44 ~~l~i~nl~~~~~---~~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~~~~~ 120 (305)
T PRK14264 44 AKLSVEDLDVYYG---DDHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVN 120 (305)
T ss_pred ceEEEEEEEEEeC---CeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccc
Confidence 3699999999996 3469999999999999999999999999999999999986 6899999999998753 4
Q ss_pred HHHHhcceEEEcccCccccccHHHHhccCCCC-------------------CCHHHHHHHHHHhcHHHHHhhCccccccc
Q 001411 906 LRSLRRKIGLVQQEPALFSTTIYENIKYGNED-------------------ASEIELMKATKAANAHGFISRMPEGYQSH 966 (1082)
Q Consensus 906 ~~~lR~~i~~VpQdp~Lf~gTIreNl~~~~~~-------------------~~d~ei~~al~~a~l~~~i~~lp~gldt~ 966 (1082)
...+|++++|+||++.+|++|+++|+.++... ..++++.++++.+++.+ ++++.
T Consensus 121 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~~~ 193 (305)
T PRK14264 121 LVELRKRVGMVFQSPNPFPKSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWD-------EVNDR 193 (305)
T ss_pred HHHHhhceEEEccCCccccccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCch-------hhhHH
Confidence 56788999999999999999999999864210 01233455555555432 33344
Q ss_pred ccCCCCCCChhHHHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhc-cCEE-EEE
Q 001411 967 VGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLMEGRTTIMVAHRLSTIRN-ADKI-AVL 1044 (1082)
Q Consensus 967 v~e~G~~LSgGQrQrlaLARAlL~~~~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~-~DrI-~Vl 1044 (1082)
....+.+||||||||++|||||+++|+||||||||++||+.+.+.+.+.|++..++.|+|+|||+++.+.. ||+| ++|
T Consensus 194 ~~~~~~~LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~~~tiiivtH~~~~i~~~~d~i~~~l 273 (305)
T PRK14264 194 LDDNALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAEEYTVVVVTHNMQQAARISDQTAVFL 273 (305)
T ss_pred hcCccccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEEe
Confidence 55667889999999999999999999999999999999999999999999998777899999999999865 9997 578
Q ss_pred eCCEEEEecChHHHhhh
Q 001411 1045 QQGKVAEIGSHEQLLRK 1061 (1082)
Q Consensus 1045 ~~G~ive~G~~~eLl~~ 1061 (1082)
++|++++.|+++++.+.
T Consensus 274 ~~G~i~~~g~~~~~~~~ 290 (305)
T PRK14264 274 TGGELVEYDDTDKIFEN 290 (305)
T ss_pred cCCEEEEeCCHHHHHhC
Confidence 99999999999999764
|
|
| >cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-41 Score=371.36 Aligned_cols=212 Identities=33% Similarity=0.510 Sum_probs=178.2
Q ss_pred EEEEEEEECCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHHhCCCCCCcEEEECCeeCCCCCHHHH----hhh
Q 001411 207 EFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWL----REQ 282 (1082)
Q Consensus 207 ~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~----~~~ 282 (1082)
.++|+++.|++ ..+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+ +++
T Consensus 26 ~~~~~~~~~~~--~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~~~ 103 (269)
T cd03294 26 SKEEILKKTGQ--TVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRKK 103 (269)
T ss_pred hhhhhhhhcCC--ceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccChhhhhhhhcCc
Confidence 46688888864 348999999999999999999999999999999999999999999999999887665443 457
Q ss_pred ceEEccCCCcCh-hcHHHHHhcCCCC--CC----HHHHHHHHHHhchHHHHhcCCCCccccccCCCCCCChHHHHHHHHH
Q 001411 283 MGLVSQEPALFA-TSIANNILLGKED--AS----MDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIA 355 (1082)
Q Consensus 283 i~~v~Q~~~l~~-~ti~~ni~~g~~~--~~----~~~~~~~~~~~~~~~~i~~lp~g~~t~~g~~g~~LSgGqkqri~lA 355 (1082)
++|++|++.+|+ .|++||+.++... .. .+++.++++..++.+.+.+ ...+||||||||++||
T Consensus 104 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~Gq~qrv~lA 172 (269)
T cd03294 104 ISMVFQSFALLPHRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEHK-----------YPDELSGGMQQRVGLA 172 (269)
T ss_pred EEEEecCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhC-----------CcccCCHHHHHHHHHH
Confidence 999999999885 5999999875321 11 2334455555555444443 3458999999999999
Q ss_pred HhcccCCCeeEEeCcccCCCHHHHHHHHHHHHHHc--CCCeEEEEccCccccc-cCCEEEEEeCCEEEEecCchhhhhc
Q 001411 356 RAVLRNPKILLLDEATSALDAESELIVQRALEKIM--SNRTTIVVAHRLSTVR-DVDTIMVLKNGQVVESGTHVDLISK 431 (1082)
Q Consensus 356 Ral~~~~~illlDEpts~LD~~~~~~i~~~l~~~~--~~~t~i~vtH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~~ 431 (1082)
|||+.+|++|||||||++||+.+.+.+.+.|.++. .++|+|++||+++.+. .||++++|++|++++.|+++++.+.
T Consensus 173 ral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 251 (269)
T cd03294 173 RALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLDEALRLGDRIAIMKDGRLVQVGTPEEILTN 251 (269)
T ss_pred HHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHHHhC
Confidence 99999999999999999999999999999998874 3789999999999875 4899999999999999999988754
|
This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-41 Score=368.47 Aligned_cols=213 Identities=29% Similarity=0.458 Sum_probs=184.0
Q ss_pred cEEEEEEEEECCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHHhCCCCCCcEEEECCeeCCCCCHHHHhhhce
Q 001411 205 QIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMG 284 (1082)
Q Consensus 205 ~i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 284 (1082)
.++++|++++|++. .+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.++
T Consensus 11 ~l~i~~l~~~~~~~--~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 88 (265)
T PRK10575 11 TFALRNVSFRVPGR--TLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFARKVA 88 (265)
T ss_pred eEEEeeEEEEECCE--EEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEehhhCCHHHHhhheE
Confidence 58999999999743 4999999999999999999999999999999999999999999999999998777778888999
Q ss_pred EEccCCCcChh-cHHHHHhcCCCC----------CCHHHHHHHHHHhchHHHHhcCCCCccccccCCCCCCChHHHHHHH
Q 001411 285 LVSQEPALFAT-SIANNILLGKED----------ASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIA 353 (1082)
Q Consensus 285 ~v~Q~~~l~~~-ti~~ni~~g~~~----------~~~~~~~~~~~~~~~~~~i~~lp~g~~t~~g~~g~~LSgGqkqri~ 353 (1082)
|++|++.++.. |+.||+.++... ...+++.++++..++.+.+.. ...+||||||||++
T Consensus 89 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LSgG~~qrv~ 157 (265)
T PRK10575 89 YLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHR-----------LVDSLSGGERQRAW 157 (265)
T ss_pred EeccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcC-----------CcccCCHHHHHHHH
Confidence 99999877665 999999876321 012345555666555444333 33589999999999
Q ss_pred HHHhcccCCCeeEEeCcccCCCHHHHHHHHHHHHHHcC--CCeEEEEccCccccc-cCCEEEEEeCCEEEEecCchhhhh
Q 001411 354 IARAVLRNPKILLLDEATSALDAESELIVQRALEKIMS--NRTTIVVAHRLSTVR-DVDTIMVLKNGQVVESGTHVDLIS 430 (1082)
Q Consensus 354 lARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~vtH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~ 430 (1082)
|||||+.+|+++||||||++||+.+.+.+.+.|.++.+ ++|+|++||+++.+. .||+|++|++|++++.|+++++..
T Consensus 158 laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~~i~~~~d~i~~l~~G~i~~~~~~~~~~~ 237 (265)
T PRK10575 158 IAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGEMIAQGTPAELMR 237 (265)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHHhcC
Confidence 99999999999999999999999999999999998743 789999999999985 589999999999999999888765
|
|
| >COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-41 Score=351.23 Aligned_cols=217 Identities=34% Similarity=0.581 Sum_probs=192.2
Q ss_pred cEEEEEEEEECCCCCC----------------------ccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHHhCCCCCCc
Q 001411 205 QIEFSEVCFAYPSRPH----------------------MVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSG 262 (1082)
Q Consensus 205 ~i~~~~v~~~y~~~~~----------------------~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G 262 (1082)
.|+++||++-|+.++. ..++|+||+++.||+..|.|-||||||||++++.|+++|++|
T Consensus 4 ~i~i~nv~kiFG~~~~~a~~~~~~G~~k~ei~~~tg~vvGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiept~G 83 (386)
T COG4175 4 KIEIKNVYKIFGKNPKRALKLLDQGKSKAEILKKTGLVVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRG 83 (386)
T ss_pred eEEeecceeecccCHHHHHHHHHcCCcHHHHHHhhCcEEeeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCCCCCc
Confidence 5888999988865321 147899999999999999999999999999999999999999
Q ss_pred EEEECCeeCCCCCHHHHh----hhceEEccCCCcChh-cHHHHHhcCCCCC------CHHHHHHHHHHhchHHHHhcCCC
Q 001411 263 KILLDGHDLKSLQLKWLR----EQMGLVSQEPALFAT-SIANNILLGKEDA------SMDRVIEAAKAANAHSFVEGLPD 331 (1082)
Q Consensus 263 ~i~~~g~~~~~~~~~~~~----~~i~~v~Q~~~l~~~-ti~~ni~~g~~~~------~~~~~~~~~~~~~~~~~i~~lp~ 331 (1082)
+|.++|.|+..++.+++| +++++|+|+.-|++. ||.||..||.+-. ..++..++++.++++.+-.+.|+
T Consensus 84 ~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhrtVl~Nv~fGLev~Gv~~~er~~~a~~~l~~VgL~~~~~~yp~ 163 (386)
T COG4175 84 EILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHRTVLENVAFGLEVQGVPKAEREERALEALELVGLEGYADKYPN 163 (386)
T ss_pred eEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccchhHhhhhhcceeecCCCHHHHHHHHHHHHHHcCchhhhhcCcc
Confidence 999999999999877664 579999999999987 9999999997532 34566778888888888877775
Q ss_pred CccccccCCCCCCChHHHHHHHHHHhcccCCCeeEEeCcccCCCHHHHHHHHHHHHHHcC--CCeEEEEccCcccc-ccC
Q 001411 332 GYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMS--NRTTIVVAHRLSTV-RDV 408 (1082)
Q Consensus 332 g~~t~~g~~g~~LSgGqkqri~lARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~vtH~~~~~-~~~ 408 (1082)
+||||+||||.|||||..+|+|||+|||+|||||--+..+++.|.++.+ +||+|+|||++++. +-.
T Consensus 164 -----------eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR~~mQdeLl~Lq~~l~KTIvFitHDLdEAlriG 232 (386)
T COG4175 164 -----------ELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQAKLKKTIVFITHDLDEALRIG 232 (386)
T ss_pred -----------cccchHHHHHHHHHHHccCCCEEEecCchhhcChHHHHHHHHHHHHHHHHhCCeEEEEecCHHHHHhcc
Confidence 8999999999999999999999999999999999999999999887743 69999999999986 457
Q ss_pred CEEEEEeCCEEEEecCchhhhhcC
Q 001411 409 DTIMVLKNGQVVESGTHVDLISKG 432 (1082)
Q Consensus 409 d~i~~l~~G~i~~~g~~~~l~~~~ 432 (1082)
|||..|++|+|+..|+|+|++.+.
T Consensus 233 ~rIaimkdG~ivQ~Gtp~eIl~~P 256 (386)
T COG4175 233 DRIAIMKDGEIVQVGTPEEILLNP 256 (386)
T ss_pred ceEEEecCCeEEEeCCHHHHHcCc
Confidence 999999999999999999999774
|
|
| >PRK13633 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-41 Score=370.01 Aligned_cols=216 Identities=30% Similarity=0.511 Sum_probs=184.2
Q ss_pred cEEEEEEEEECCCC----CCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHHhCCCCCCcEEEECCeeCCCCC-HHHH
Q 001411 205 QIEFSEVCFAYPSR----PHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQ-LKWL 279 (1082)
Q Consensus 205 ~i~~~~v~~~y~~~----~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~-~~~~ 279 (1082)
-++++|++++|++. ..++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.... ...+
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~ 83 (280)
T PRK13633 4 MIKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENLWDI 83 (280)
T ss_pred eEEEeeeEEEcCCCCCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeccccccHHHH
Confidence 48999999999742 235999999999999999999999999999999999999999999999999987543 3557
Q ss_pred hhhceEEccCCC--cChhcHHHHHhcCCCC--CC----HHHHHHHHHHhchHHHHhcCCCCccccccCCCCCCChHHHHH
Q 001411 280 REQMGLVSQEPA--LFATSIANNILLGKED--AS----MDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQR 351 (1082)
Q Consensus 280 ~~~i~~v~Q~~~--l~~~ti~~ni~~g~~~--~~----~~~~~~~~~~~~~~~~i~~lp~g~~t~~g~~g~~LSgGqkqr 351 (1082)
++.++|++|+|. ++..|+.+|+.++... .+ .+++.++++..++.+++.+ ...+||||||||
T Consensus 84 ~~~i~~v~q~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~-----------~~~~LS~G~~qr 152 (280)
T PRK13633 84 RNKAGMVFQNPDNQIVATIVEEDVAFGPENLGIPPEEIRERVDESLKKVGMYEYRRH-----------APHLLSGGQKQR 152 (280)
T ss_pred hhheEEEecChhhhhccccHHHHHHhhHhhcCCCHHHHHHHHHHHHHHCCCHhHhhC-----------CcccCCHHHHHH
Confidence 888999999984 6767999999886321 11 2334555555555544444 346899999999
Q ss_pred HHHHHhcccCCCeeEEeCcccCCCHHHHHHHHHHHHHHc--CCCeEEEEccCccccccCCEEEEEeCCEEEEecCchhhh
Q 001411 352 IAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIM--SNRTTIVVAHRLSTVRDVDTIMVLKNGQVVESGTHVDLI 429 (1082)
Q Consensus 352 i~lARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~--~~~t~i~vtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~ 429 (1082)
++|||||+.+|+++||||||++||+.+...+.+.|.++. .+.|+|++||+++.+..||++++|++|++++.|+++++.
T Consensus 153 v~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 232 (280)
T PRK13633 153 VAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYMEEAVEADRIIVMDSGKVVMEGTPKEIF 232 (280)
T ss_pred HHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChHHHhcCCEEEEEECCEEEEecCHHHHh
Confidence 999999999999999999999999999999999999874 378999999999998889999999999999999999987
Q ss_pred hc
Q 001411 430 SK 431 (1082)
Q Consensus 430 ~~ 431 (1082)
.+
T Consensus 233 ~~ 234 (280)
T PRK13633 233 KE 234 (280)
T ss_pred cC
Confidence 54
|
|
| >PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-40 Score=367.50 Aligned_cols=216 Identities=32% Similarity=0.531 Sum_probs=183.6
Q ss_pred cEEEEEEEEECCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHHhCCCCCCcEEEECCeeCCCCCHHHHhhhce
Q 001411 205 QIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMG 284 (1082)
Q Consensus 205 ~i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 284 (1082)
.++++|++++|++....+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.++
T Consensus 7 ~l~i~~l~~~~~~~~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 86 (269)
T PRK13648 7 IIVFKNVSFQYQSDASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLRKHIG 86 (269)
T ss_pred eEEEEEEEEEcCCCCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhhee
Confidence 58999999999754345999999999999999999999999999999999999999999999999998877778888999
Q ss_pred EEccCCC--cChhcHHHHHhcCCCC--CCHH----HHHHHHHHhchHHHHhcCCCCccccccCCCCCCChHHHHHHHHHH
Q 001411 285 LVSQEPA--LFATSIANNILLGKED--ASMD----RVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIAR 356 (1082)
Q Consensus 285 ~v~Q~~~--l~~~ti~~ni~~g~~~--~~~~----~~~~~~~~~~~~~~i~~lp~g~~t~~g~~g~~LSgGqkqri~lAR 356 (1082)
|++|+|. ++..|+++|+.++... ...+ ++.++++..++.+ .......+||||||||++|||
T Consensus 87 ~v~q~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LS~G~~qrl~lar 155 (269)
T PRK13648 87 IVFQNPDNQFVGSIVKYDVAFGLENHAVPYDEMHRRVSEALKQVDMLE-----------RADYEPNALSGGQKQRVAIAG 155 (269)
T ss_pred EEEeChHHhcccccHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCch-----------hhhCCcccCCHHHHHHHHHHH
Confidence 9999985 4455899999886432 1222 2333333333322 333455689999999999999
Q ss_pred hcccCCCeeEEeCcccCCCHHHHHHHHHHHHHHcC--CCeEEEEccCccccccCCEEEEEeCCEEEEecCchhhhhc
Q 001411 357 AVLRNPKILLLDEATSALDAESELIVQRALEKIMS--NRTTIVVAHRLSTVRDVDTIMVLKNGQVVESGTHVDLISK 431 (1082)
Q Consensus 357 al~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~vtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~ 431 (1082)
|++.+|+++||||||++||+.+.+.+.+.|+++.+ ++|+|++||+++.+..||+|++|++|++++.|+++++...
T Consensus 156 al~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 232 (269)
T PRK13648 156 VLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLSEAMEADHVIVMNKGTVYKEGTPTEIFDH 232 (269)
T ss_pred HHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCchHHhcCCEEEEEECCEEEEecCHHHHhcC
Confidence 99999999999999999999999999999998753 6899999999998878999999999999999999888654
|
|
| >PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-40 Score=368.89 Aligned_cols=214 Identities=29% Similarity=0.522 Sum_probs=183.7
Q ss_pred EEEEEEEEECCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHHhCCCCCCcEEEECCeeCCCCCHHHHhhhceE
Q 001411 206 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGL 285 (1082)
Q Consensus 206 i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 285 (1082)
++++|++++|+++ ..+|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|+++...+...+++.++|
T Consensus 4 l~~~~l~~~~~~~-~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~ 82 (277)
T PRK13652 4 IETRDLCYSYSGS-KEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREVRKFVGL 82 (277)
T ss_pred EEEEEEEEEeCCC-CceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhheEE
Confidence 7899999999643 249999999999999999999999999999999999999999999999999887777778889999
Q ss_pred EccCC--CcChhcHHHHHhcCCC--CCCH----HHHHHHHHHhchHHHHhcCCCCccccccCCCCCCChHHHHHHHHHHh
Q 001411 286 VSQEP--ALFATSIANNILLGKE--DASM----DRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARA 357 (1082)
Q Consensus 286 v~Q~~--~l~~~ti~~ni~~g~~--~~~~----~~~~~~~~~~~~~~~i~~lp~g~~t~~g~~g~~LSgGqkqri~lARa 357 (1082)
|+|++ .+++.|+.||+.++.. ..+. +++.++++..++.+.+.+ ....||||||||++||||
T Consensus 83 v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~Gq~qrl~lara 151 (277)
T PRK13652 83 VFQNPDDQIFSPTVEQDIAFGPINLGLDEETVAHRVSSALHMLGLEELRDR-----------VPHHLSGGEKKRVAIAGV 151 (277)
T ss_pred EecCcccccccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhHhcC-----------CcccCCHHHHHHHHHHHH
Confidence 99998 3677899999987532 1122 234455555555444333 345899999999999999
Q ss_pred cccCCCeeEEeCcccCCCHHHHHHHHHHHHHHcC--CCeEEEEccCccccc-cCCEEEEEeCCEEEEecCchhhhhc
Q 001411 358 VLRNPKILLLDEATSALDAESELIVQRALEKIMS--NRTTIVVAHRLSTVR-DVDTIMVLKNGQVVESGTHVDLISK 431 (1082)
Q Consensus 358 l~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~vtH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~~ 431 (1082)
|+.+|+++||||||++||+.+.+.+.+.++++.+ +.|+|++||+++.+. .||+|++|++|++++.|+++++.+.
T Consensus 152 L~~~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~ 228 (277)
T PRK13652 152 IAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGRIVAYGTVEEIFLQ 228 (277)
T ss_pred HHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEEECCHHHHhcC
Confidence 9999999999999999999999999999998753 789999999999985 6999999999999999999998754
|
|
| >PRK13547 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-40 Score=365.48 Aligned_cols=212 Identities=26% Similarity=0.396 Sum_probs=183.4
Q ss_pred EEEEeEEEECCCCCCcccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCC--------ccEEEECCccCCCCCH
Q 001411 835 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPI--------SGTVLIDGYDIRTLNL 906 (1082)
Q Consensus 835 I~~~~Vs~~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~--------~G~I~idG~di~~i~~ 906 (1082)
|+++|++++|+ +.++|+|+||+|++||++||+|+||||||||+++|.|+++|+ +|+|.+||.++...+.
T Consensus 2 l~~~nl~~~~~---~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~~~ 78 (272)
T PRK13547 2 LTADHLHVARR---HRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAIDA 78 (272)
T ss_pred eEEEEEEEEEC---CEeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccCCH
Confidence 78999999996 346999999999999999999999999999999999999998 9999999999988888
Q ss_pred HHHhcceEEEcccCc-cccccHHHHhccCCC-C------CC---HHHHHHHHHHhcHHHHHhhCcccccccccCCCCCCC
Q 001411 907 RSLRRKIGLVQQEPA-LFSTTIYENIKYGNE-D------AS---EIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLS 975 (1082)
Q Consensus 907 ~~lR~~i~~VpQdp~-Lf~gTIreNl~~~~~-~------~~---d~ei~~al~~a~l~~~i~~lp~gldt~v~e~G~~LS 975 (1082)
..+|+.++|+||++. +|+.|+++|+.++.. . .+ ++.++++++..++ ++.++.....||
T Consensus 79 ~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l-----------~~~~~~~~~~LS 147 (272)
T PRK13547 79 PRLARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGA-----------TALVGRDVTTLS 147 (272)
T ss_pred HHHHhhcEEecccCCCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCc-----------HhhhcCCcccCC
Confidence 888889999999986 578899999976421 1 11 1234445555544 334445567899
Q ss_pred hhHHHHHHHHHHHc---------cCCCEEEeeCCCCCCCHHHHHHHHHHHHHhcC--CceEEEEecCchhhh-ccCEEEE
Q 001411 976 GGQKQRVAIARAIL---------KNPSILLLDEATSALDTASENLIQEALDKLME--GRTTIMVAHRLSTIR-NADKIAV 1043 (1082)
Q Consensus 976 gGQrQrlaLARAlL---------~~~~ILlLDEaTS~LD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~-~~DrI~V 1043 (1082)
||||||++|||||+ .+|++|||||||++||+.+.+.+.+.|++..+ ++|+|+|||+++.+. .||++++
T Consensus 148 gG~~qrv~laral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~~~~~~~~d~i~~ 227 (272)
T PRK13547 148 GGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPNLAARHADRIAM 227 (272)
T ss_pred HHHHHHHHHHHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEE
Confidence 99999999999999 59999999999999999999999999998753 789999999999996 4999999
Q ss_pred EeCCEEEEecChHHHhh
Q 001411 1044 LQQGKVAEIGSHEQLLR 1060 (1082)
Q Consensus 1044 l~~G~ive~G~~~eLl~ 1060 (1082)
|++|++++.|++++++.
T Consensus 228 l~~G~i~~~g~~~~~~~ 244 (272)
T PRK13547 228 LADGAIVAHGAPADVLT 244 (272)
T ss_pred EECCeEEEecCHHHHcC
Confidence 99999999999999875
|
|
| >cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-41 Score=357.78 Aligned_cols=201 Identities=36% Similarity=0.642 Sum_probs=169.3
Q ss_pred EEEEEEEECCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHHhCCCCCCcEEEECCeeCCCCCHHHHhhhceEE
Q 001411 207 EFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGLV 286 (1082)
Q Consensus 207 ~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v 286 (1082)
+++|++++|++....+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.|+|+
T Consensus 1 ~~~~l~~~~~~~~~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~ 80 (211)
T cd03225 1 ELKNLSFSYPDGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRKVGLV 80 (211)
T ss_pred CceeEEEecCCCCeeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccCCHHHHHhhceEE
Confidence 36899999975223599999999999999999999999999999999999999999999999999877777788899999
Q ss_pred ccCCC--cChhcHHHHHhcCCCC--CCH----HHHHHHHHHhchHHHHhcCCCCccccccCCCCCCChHHHHHHHHHHhc
Q 001411 287 SQEPA--LFATSIANNILLGKED--ASM----DRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAV 358 (1082)
Q Consensus 287 ~Q~~~--l~~~ti~~ni~~g~~~--~~~----~~~~~~~~~~~~~~~i~~lp~g~~t~~g~~g~~LSgGqkqri~lARal 358 (1082)
+|++. +++.|++||+.++... ... +++.+.++..+ ++.........||||||||++|||||
T Consensus 81 ~q~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~-----------l~~~~~~~~~~LSgG~~qrv~laral 149 (211)
T cd03225 81 FQNPDDQFFGPTVEEEVAFGLENLGLPEEEIEERVEEALELVG-----------LEGLRDRSPFTLSGGQKQRVAIAGVL 149 (211)
T ss_pred ecChhhhcCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcC-----------cHhhhcCCcccCCHHHHHHHHHHHHH
Confidence 99984 5678999999875321 111 12233333333 33334455578999999999999999
Q ss_pred ccCCCeeEEeCcccCCCHHHHHHHHHHHHHHcC-CCeEEEEccCcccccc-CCEEEEEeCCE
Q 001411 359 LRNPKILLLDEATSALDAESELIVQRALEKIMS-NRTTIVVAHRLSTVRD-VDTIMVLKNGQ 418 (1082)
Q Consensus 359 ~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~-~~t~i~vtH~~~~~~~-~d~i~~l~~G~ 418 (1082)
+.+|+++||||||++||+.+++.+.+.|.++.+ ++|+|++||+++.+.. ||+|++|++|+
T Consensus 150 ~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~G~ 211 (211)
T cd03225 150 AMDPDILLLDEPTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDLDLLLELADRVIVLEDGK 211 (211)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCC
Confidence 999999999999999999999999999998754 7899999999999876 99999999884
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >PRK14247 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-41 Score=365.52 Aligned_cols=218 Identities=31% Similarity=0.463 Sum_probs=183.1
Q ss_pred cEEEEEEEEECCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHHhCCCC-----CCcEEEECCeeCCCCCHHHH
Q 001411 205 QIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEP-----TSGKILLDGHDLKSLQLKWL 279 (1082)
Q Consensus 205 ~i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~-----~~G~i~~~g~~~~~~~~~~~ 279 (1082)
.++++|++++|++. ++|+|+||++++||+++|+||||||||||+++|+|+++| ++|+|.++|.++...+...+
T Consensus 3 ~l~~~~l~~~~~~~--~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 80 (250)
T PRK14247 3 KIEIRDLKVSFGQV--EVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIEL 80 (250)
T ss_pred eEEEEeeEEEECCe--eeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHHH
Confidence 48999999999753 499999999999999999999999999999999999974 79999999999987777788
Q ss_pred hhhceEEccCCCcC-hhcHHHHHhcCCCCC----C----HHHHHHHHHHhchHHHHhcCCCCccccccCCCCCCChHHHH
Q 001411 280 REQMGLVSQEPALF-ATSIANNILLGKEDA----S----MDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQ 350 (1082)
Q Consensus 280 ~~~i~~v~Q~~~l~-~~ti~~ni~~g~~~~----~----~~~~~~~~~~~~~~~~i~~lp~g~~t~~g~~g~~LSgGqkq 350 (1082)
++.|+|++|++.++ +.|++||+.++.... . .+++.++++..++.+. .+........+|||||||
T Consensus 81 ~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-------~~~~~~~~~~~LSgG~~q 153 (250)
T PRK14247 81 RRRVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDE-------VKDRLDAPAGKLSGGQQQ 153 (250)
T ss_pred hccEEEEeccCccCCCCcHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcc-------hhhhhcCCcccCCHHHHH
Confidence 88999999999765 569999998753210 1 1233344444433211 112334556789999999
Q ss_pred HHHHHHhcccCCCeeEEeCcccCCCHHHHHHHHHHHHHHcCCCeEEEEccCccccc-cCCEEEEEeCCEEEEecCchhhh
Q 001411 351 RIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVR-DVDTIMVLKNGQVVESGTHVDLI 429 (1082)
Q Consensus 351 ri~lARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~vtH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~ 429 (1082)
|++|||||+++|+++||||||++||+.+...+.+.|+++.+++|+|++||+++.+. .||++++|++|++++.|+++++.
T Consensus 154 rv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 233 (250)
T PRK14247 154 RLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELKKDMTIVLVTHFPQQAARISDYVAFLYKGQIVEWGPTREVF 233 (250)
T ss_pred HHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCeEEEECCHHHHH
Confidence 99999999999999999999999999999999999998877899999999999885 58999999999999999998886
Q ss_pred hc
Q 001411 430 SK 431 (1082)
Q Consensus 430 ~~ 431 (1082)
+.
T Consensus 234 ~~ 235 (250)
T PRK14247 234 TN 235 (250)
T ss_pred cC
Confidence 54
|
|
| >PRK14274 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-40 Score=366.35 Aligned_cols=218 Identities=29% Similarity=0.449 Sum_probs=182.6
Q ss_pred cEEEEEEEEECCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHHhCCC--C---CCcEEEECCeeCCC--CCHH
Q 001411 205 QIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYE--P---TSGKILLDGHDLKS--LQLK 277 (1082)
Q Consensus 205 ~i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~--~---~~G~i~~~g~~~~~--~~~~ 277 (1082)
.|+++|+++.|++. ++|+|+||+|++||+++|+|+||||||||+++|+|+++ | ++|+|.++|+++.. .+..
T Consensus 12 ~l~i~~l~~~~~~~--~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~~~~ 89 (259)
T PRK14274 12 VYQINGMNLWYGQH--HALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVDLV 89 (259)
T ss_pred eEEEeeEEEEECCe--eeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccccCHH
Confidence 58999999999743 49999999999999999999999999999999999997 3 69999999999863 3455
Q ss_pred HHhhhceEEccCCCcChhcHHHHHhcCCCCC---CHH----HHHHHHHHhchHHHHhcCCCCccccccCCCCCCChHHHH
Q 001411 278 WLREQMGLVSQEPALFATSIANNILLGKEDA---SMD----RVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQ 350 (1082)
Q Consensus 278 ~~~~~i~~v~Q~~~l~~~ti~~ni~~g~~~~---~~~----~~~~~~~~~~~~~~i~~lp~g~~t~~g~~g~~LSgGqkq 350 (1082)
.+++.++|++|++.+|+.|++||+.++.... ..+ ++.++++..++.+.+ .+.....+.+|||||||
T Consensus 90 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~l~~~~~~LS~Gq~q 162 (259)
T PRK14274 90 ELRKNIGMVFQKGNPFPQSIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEV-------KDRLHTQALSLSGGQQQ 162 (259)
T ss_pred HHhhceEEEecCCcccccCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhh-------hhhhhCCcccCCHHHHH
Confidence 6788999999999999999999998763211 112 222333333332211 23345667789999999
Q ss_pred HHHHHHhcccCCCeeEEeCcccCCCHHHHHHHHHHHHHHcCCCeEEEEccCccccc-cCCEEEEEeCCEEEEecCchhhh
Q 001411 351 RIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVR-DVDTIMVLKNGQVVESGTHVDLI 429 (1082)
Q Consensus 351 ri~lARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~vtH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~ 429 (1082)
|++|||||+.+|+++||||||++||+.+...+.+.|.++.+++|+|+|||+++.+. .||++++|++|++++.|+++++.
T Consensus 163 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 242 (259)
T PRK14274 163 RLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKEKYTIVIVTHNMQQAARVSDQTAFFYMGELVECNDTNKMF 242 (259)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEECCHHHHh
Confidence 99999999999999999999999999999999999999877789999999999876 48999999999999999999886
Q ss_pred hc
Q 001411 430 SK 431 (1082)
Q Consensus 430 ~~ 431 (1082)
.+
T Consensus 243 ~~ 244 (259)
T PRK14274 243 SN 244 (259)
T ss_pred hC
Confidence 54
|
|
| >PRK14259 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-40 Score=366.51 Aligned_cols=219 Identities=30% Similarity=0.501 Sum_probs=183.9
Q ss_pred CcEEEEEEEEECCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHHhCCC-----CCCcEEEECCeeCCC--CCH
Q 001411 204 GQIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYE-----PTSGKILLDGHDLKS--LQL 276 (1082)
Q Consensus 204 ~~i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~-----~~~G~i~~~g~~~~~--~~~ 276 (1082)
..++++|++++|++ ..+|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++.. .+.
T Consensus 12 ~~l~i~nl~~~~~~--~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~~~ 89 (269)
T PRK14259 12 IIISLQNVTISYGT--FEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVDP 89 (269)
T ss_pred ceEEEEeEEEEECC--EEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccCCH
Confidence 35999999999975 349999999999999999999999999999999999987 699999999998853 456
Q ss_pred HHHhhhceEEccCCCcChhcHHHHHhcCCCCC--C---HHHHHHHHHHhchHHHHhcCCCCccccccCCCCCCChHHHHH
Q 001411 277 KWLREQMGLVSQEPALFATSIANNILLGKEDA--S---MDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQR 351 (1082)
Q Consensus 277 ~~~~~~i~~v~Q~~~l~~~ti~~ni~~g~~~~--~---~~~~~~~~~~~~~~~~i~~lp~g~~t~~g~~g~~LSgGqkqr 351 (1082)
..+|+.++|++|++.+|+.|++||+.++.... . .+++.++++..++. .++++.......+||||||||
T Consensus 90 ~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~-------~~l~~~~~~~~~~LS~G~~qr 162 (269)
T PRK14259 90 VEVRRRIGMVFQQPNPFPKSIYENIAFGARINGYTGDMDELVERSLRKAAVW-------DECKDKLNESGYSLSGGQQQR 162 (269)
T ss_pred HHHhhceEEEccCCccchhhHHHHHhhhhhhcCCcHHHHHHHHHHHHHhCCc-------chhhhhhCCCcccCCHHHHHH
Confidence 67788899999999999889999999864321 1 12233334433322 223334556677899999999
Q ss_pred HHHHHhcccCCCeeEEeCcccCCCHHHHHHHHHHHHHHcCCCeEEEEccCccccc-cCCEEEEEeC-----------CEE
Q 001411 352 IAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVR-DVDTIMVLKN-----------GQV 419 (1082)
Q Consensus 352 i~lARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~vtH~~~~~~-~~d~i~~l~~-----------G~i 419 (1082)
++|||||+.+|+++||||||++||+.+...+.+.|.++.+++|+|++||+++.+. .||++++|++ |++
T Consensus 163 l~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~~~~~~~~~g~~g~~ 242 (269)
T PRK14259 163 LCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKKNFTIVIVTHNMQQAVRVSDMTAFFNAEEVEGGSGGKVGYL 242 (269)
T ss_pred HHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeccccccccccccceE
Confidence 9999999999999999999999999999999999998876789999999999885 5899999996 678
Q ss_pred EEecCchhhhhc
Q 001411 420 VESGTHVDLISK 431 (1082)
Q Consensus 420 ~~~g~~~~l~~~ 431 (1082)
++.|+++++...
T Consensus 243 ~~~~~~~~~~~~ 254 (269)
T PRK14259 243 VEFNETKKIFNS 254 (269)
T ss_pred EEeCCHHHHHhC
Confidence 999999888653
|
|
| >cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-41 Score=357.74 Aligned_cols=203 Identities=33% Similarity=0.567 Sum_probs=170.7
Q ss_pred EEEEEEEEECCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHHhCCCCCCcEEEECCeeCCCCCHHHHhhhceE
Q 001411 206 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGL 285 (1082)
Q Consensus 206 i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 285 (1082)
|+++|++++|++. ++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+.. ++.++|
T Consensus 1 i~~~~l~~~~~~~--~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~~~~~~--~~~i~~ 76 (213)
T cd03301 1 VELENVTKRFGNV--TALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPK--DRDIAM 76 (213)
T ss_pred CEEEeeEEEECCe--eeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCcc--cceEEE
Confidence 4789999999753 499999999999999999999999999999999999999999999999998765432 467999
Q ss_pred EccCCCcCh-hcHHHHHhcCCCC--CCH----HHHHHHHHHhchHHHHhcCCCCccccccCCCCCCChHHHHHHHHHHhc
Q 001411 286 VSQEPALFA-TSIANNILLGKED--ASM----DRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAV 358 (1082)
Q Consensus 286 v~Q~~~l~~-~ti~~ni~~g~~~--~~~----~~~~~~~~~~~~~~~i~~lp~g~~t~~g~~g~~LSgGqkqri~lARal 358 (1082)
++|++.+|+ .|++||+.++... ... +++.++++..++ +........+||||||||++|||||
T Consensus 77 ~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l-----------~~~~~~~~~~LS~G~~qr~~laral 145 (213)
T cd03301 77 VFQNYALYPHMTVYDNIAFGLKLRKVPKDEIDERVREVAELLQI-----------EHLLDRKPKQLSGGQRQRVALGRAI 145 (213)
T ss_pred EecChhhccCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCC-----------HHHHhCChhhCCHHHHHHHHHHHHH
Confidence 999999886 4999999875321 111 223333444433 3334445568999999999999999
Q ss_pred ccCCCeeEEeCcccCCCHHHHHHHHHHHHHHc--CCCeEEEEccCcccccc-CCEEEEEeCCEEEEec
Q 001411 359 LRNPKILLLDEATSALDAESELIVQRALEKIM--SNRTTIVVAHRLSTVRD-VDTIMVLKNGQVVESG 423 (1082)
Q Consensus 359 ~~~~~illlDEpts~LD~~~~~~i~~~l~~~~--~~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~g 423 (1082)
+.+|+++||||||++||+.+.+.+.+.|+++. .++|+|++||+++.+.. ||+|++|++|++++.|
T Consensus 146 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~g~~~~~g 213 (213)
T cd03301 146 VREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQVEAMTMADRIAVMNDGQIQQIG 213 (213)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEecC
Confidence 99999999999999999999999999999875 37899999999998765 8999999999998765
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. |
| >PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-41 Score=367.92 Aligned_cols=214 Identities=25% Similarity=0.461 Sum_probs=180.3
Q ss_pred cEEEEEEEEECCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHHhCCCCCCcEEEECCeeCCCCCHH---HHhh
Q 001411 205 QIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLK---WLRE 281 (1082)
Q Consensus 205 ~i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~---~~~~ 281 (1082)
.|+++|++++|++ ..+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+.. .+++
T Consensus 7 ~l~~~~l~~~~~~--~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~ 84 (269)
T PRK11831 7 LVDMRGVSFTRGN--RCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYTVRK 84 (269)
T ss_pred eEEEeCeEEEECC--EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccChhhHHHHhh
Confidence 5899999999974 3499999999999999999999999999999999999999999999999998766543 3567
Q ss_pred hceEEccCCCcChh-cHHHHHhcCCCC---CCHH----HHHHHHHHhchHHHHhcCCCCccccccCCCCCCChHHHHHHH
Q 001411 282 QMGLVSQEPALFAT-SIANNILLGKED---ASMD----RVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIA 353 (1082)
Q Consensus 282 ~i~~v~Q~~~l~~~-ti~~ni~~g~~~---~~~~----~~~~~~~~~~~~~~i~~lp~g~~t~~g~~g~~LSgGqkqri~ 353 (1082)
.++|++|++.+|+. |+.||+.++... .+.+ ++.+.++.. |+.........+||||||||++
T Consensus 85 ~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~-----------gl~~~~~~~~~~LSgGq~qrv~ 153 (269)
T PRK11831 85 RMSMLFQSGALFTDMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAV-----------GLRGAAKLMPSELSGGMARRAA 153 (269)
T ss_pred cEEEEecccccCCCCCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHc-----------CChhhhhCChhhCCHHHHHHHH
Confidence 89999999999986 999999864211 1111 222233333 3333334455689999999999
Q ss_pred HHHhcccCCCeeEEeCcccCCCHHHHHHHHHHHHHHcC--CCeEEEEccCcccccc-CCEEEEEeCCEEEEecCchhhhh
Q 001411 354 IARAVLRNPKILLLDEATSALDAESELIVQRALEKIMS--NRTTIVVAHRLSTVRD-VDTIMVLKNGQVVESGTHVDLIS 430 (1082)
Q Consensus 354 lARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~ 430 (1082)
|||||+.+|+++||||||++||+.+.+.+.+.|+++.+ ++|+|++||+++.+.. ||++++|++|++++.|+++++.+
T Consensus 154 laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 233 (269)
T PRK11831 154 LARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVPEVLSIADHAYIVADKKIVAHGSAQALQA 233 (269)
T ss_pred HHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhhCEEEEEECCEEEEeCCHHHHhc
Confidence 99999999999999999999999999999999998743 6899999999998865 89999999999999999999876
Q ss_pred c
Q 001411 431 K 431 (1082)
Q Consensus 431 ~ 431 (1082)
.
T Consensus 234 ~ 234 (269)
T PRK11831 234 N 234 (269)
T ss_pred C
Confidence 4
|
|
| >PRK00349 uvrA excinuclease ABC subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-40 Score=407.23 Aligned_cols=108 Identities=30% Similarity=0.510 Sum_probs=95.6
Q ss_pred cccc-cccCCCCCCChhHHHHHHHHHHHccCC---CEEEeeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEecCchhhh
Q 001411 962 GYQS-HVGDRGVQLSGGQKQRVAIARAILKNP---SILLLDEATSALDTASENLIQEALDKLM-EGRTTIMVAHRLSTIR 1036 (1082)
Q Consensus 962 gldt-~v~e~G~~LSgGQrQrlaLARAlL~~~---~ILlLDEaTS~LD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~ 1036 (1082)
|++. .++.....||||||||++|||+|+++| +++||||||++||+.+.+.+.+.|++.. ++.|||+|+|+++.+.
T Consensus 818 gL~~l~l~~~~~tLSgGEkQRl~LAraL~~~p~~~~llILDEPtsGLD~~~~~~L~~~L~~l~~~G~TVIiitH~~~~i~ 897 (943)
T PRK00349 818 GLGYIKLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFEDIRKLLEVLHRLVDKGNTVVVIEHNLDVIK 897 (943)
T ss_pred CCCcccccCCcccCCHHHHHHHHHHHHHhcCCCCCeEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHH
Confidence 5554 467777889999999999999999999 9999999999999999999999999875 5889999999999998
Q ss_pred ccCEEEEE------eCCEEEEecChHHHhhhccchHHHH
Q 001411 1037 NADKIAVL------QQGKVAEIGSHEQLLRKENGIYKQL 1069 (1082)
Q Consensus 1037 ~~DrI~Vl------~~G~ive~G~~~eLl~~~~g~f~~l 1069 (1082)
.||+|++| ++|+|++.|+|+++.+.+.+.-.+.
T Consensus 898 ~aD~ii~Lgp~~G~~~G~Iv~~Gt~~el~~~~~s~t~~~ 936 (943)
T PRK00349 898 TADWIIDLGPEGGDGGGEIVATGTPEEVAKVEASYTGRY 936 (943)
T ss_pred hCCEEEEecCCcCCCCCEEEEeCCHHHHHhCcccHHHHH
Confidence 99999999 6999999999999997655443333
|
|
| >PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-41 Score=363.03 Aligned_cols=217 Identities=31% Similarity=0.553 Sum_probs=181.1
Q ss_pred EEEEEEEEECCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHHhCCCCCCcEEEECCeeCCCC--CHHHHhhhc
Q 001411 206 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSL--QLKWLREQM 283 (1082)
Q Consensus 206 i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~--~~~~~~~~i 283 (1082)
++++|++++|++ .++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.++... +...+++.+
T Consensus 2 l~~~~l~~~~~~--~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i 79 (240)
T PRK09493 2 IEFKNVSKHFGP--TQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLIRQEA 79 (240)
T ss_pred EEEEeEEEEECC--eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCChhHHHHhhce
Confidence 689999999974 3499999999999999999999999999999999999999999999999998754 345677889
Q ss_pred eEEccCCCcCh-hcHHHHHhcCCC---CCCHHHHHHHHHHhchHHHHhcCCCCccccccCCCCCCChHHHHHHHHHHhcc
Q 001411 284 GLVSQEPALFA-TSIANNILLGKE---DASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVL 359 (1082)
Q Consensus 284 ~~v~Q~~~l~~-~ti~~ni~~g~~---~~~~~~~~~~~~~~~~~~~i~~lp~g~~t~~g~~g~~LSgGqkqri~lARal~ 359 (1082)
+|++|++.++. .|++||+.++.. ....++..+ .+.+.++.+ |++.........||||||||++||||++
T Consensus 80 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~-----~~~~~l~~~--gl~~~~~~~~~~LS~G~~qrv~la~al~ 152 (240)
T PRK09493 80 GMVFQQFYLFPHLTALENVMFGPLRVRGASKEEAEK-----QARELLAKV--GLAERAHHYPSELSGGQQQRVAIARALA 152 (240)
T ss_pred EEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHH-----HHHHHHHHc--CChHHHhcChhhcCHHHHHHHHHHHHHh
Confidence 99999998886 499999987531 111111111 112233333 4544455566789999999999999999
Q ss_pred cCCCeeEEeCcccCCCHHHHHHHHHHHHHHc-CCCeEEEEccCcccccc-CCEEEEEeCCEEEEecCchhhhhc
Q 001411 360 RNPKILLLDEATSALDAESELIVQRALEKIM-SNRTTIVVAHRLSTVRD-VDTIMVLKNGQVVESGTHVDLISK 431 (1082)
Q Consensus 360 ~~~~illlDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 431 (1082)
.+|+++||||||++||+++...+.+.|.++. +++|+|++||+++.+.. ||++++|++|++++.|+++++.+.
T Consensus 153 ~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 226 (240)
T PRK09493 153 VKPKLMLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIGFAEKVASRLIFIDKGRIAEDGDPQVLIKN 226 (240)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeeCCHHHHhcC
Confidence 9999999999999999999999999998875 47899999999999865 899999999999999998887653
|
|
| >PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-40 Score=362.37 Aligned_cols=205 Identities=31% Similarity=0.463 Sum_probs=175.1
Q ss_pred CcEEEEEEEEECCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHHhCCCCCCcEEEECCeeCCCCCHHHHhhhc
Q 001411 204 GQIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQM 283 (1082)
Q Consensus 204 ~~i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i 283 (1082)
..|+++|++++|++. .+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++. .+++.+
T Consensus 11 ~~l~i~~l~~~~~~~--~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~-----~~~~~i 83 (257)
T PRK11247 11 TPLLLNAVSKRYGER--TVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLA-----EAREDT 83 (257)
T ss_pred CcEEEEEEEEEECCc--ceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEHH-----HhhCce
Confidence 359999999999753 4999999999999999999999999999999999999999999999998753 456789
Q ss_pred eEEccCCCcCh-hcHHHHHhcCCCCCCHHHHHHHHHHhchHHHHhcCCCCccccccCCCCCCChHHHHHHHHHHhcccCC
Q 001411 284 GLVSQEPALFA-TSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNP 362 (1082)
Q Consensus 284 ~~v~Q~~~l~~-~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~lp~g~~t~~g~~g~~LSgGqkqri~lARal~~~~ 362 (1082)
+|++|++.+|+ .|++||+.++......+++.++++..++.+ .......+||||||||++|||||+.+|
T Consensus 84 ~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~l~~~gl~~-----------~~~~~~~~LSgGqkqrl~laraL~~~p 152 (257)
T PRK11247 84 RLMFQDARLLPWKKVIDNVGLGLKGQWRDAALQALAAVGLAD-----------RANEWPAALSGGQKQRVALARALIHRP 152 (257)
T ss_pred EEEecCccCCCCCcHHHHHHhcccchHHHHHHHHHHHcCChh-----------HhcCChhhCCHHHHHHHHHHHHHhcCC
Confidence 99999999887 599999988643222334455555554433 334455789999999999999999999
Q ss_pred CeeEEeCcccCCCHHHHHHHHHHHHHHc--CCCeEEEEccCccccc-cCCEEEEEeCCEEEEecCch
Q 001411 363 KILLLDEATSALDAESELIVQRALEKIM--SNRTTIVVAHRLSTVR-DVDTIMVLKNGQVVESGTHV 426 (1082)
Q Consensus 363 ~illlDEpts~LD~~~~~~i~~~l~~~~--~~~t~i~vtH~~~~~~-~~d~i~~l~~G~i~~~g~~~ 426 (1082)
+++||||||++||+.+...+.+.|.++. .++|+|+|||+++.+. .||+|++|++|++++.|+.+
T Consensus 153 ~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~~~~ 219 (257)
T PRK11247 153 GLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDVSEAVAMADRVLLIEEGKIGLDLTVD 219 (257)
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecccc
Confidence 9999999999999999999999998873 3789999999999875 58999999999999888654
|
|
| >TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-41 Score=374.18 Aligned_cols=200 Identities=28% Similarity=0.477 Sum_probs=172.4
Q ss_pred cccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCccCCCCCHHHHhcceEEEcccCccccc-cHH
Q 001411 850 ITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRKIGLVQQEPALFST-TIY 928 (1082)
Q Consensus 850 ~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR~~i~~VpQdp~Lf~g-TIr 928 (1082)
.++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++.. ....+|++++|+||++.+|+. |++
T Consensus 6 ~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~-~~~~~~~~i~~~~q~~~~~~~~tv~ 84 (302)
T TIGR01188 6 FKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVR-EPRKVRRSIGIVPQYASVDEDLTGR 84 (302)
T ss_pred eeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccc-CHHHHHhhcEEecCCCCCCCCCcHH
Confidence 469999999999999999999999999999999999999999999999999876 345778999999999999876 999
Q ss_pred HHhccCCC--CCC----HHHHHHHHHHhcHHHHHhhCcccccccccCCCCCCChhHHHHHHHHHHHccCCCEEEeeCCCC
Q 001411 929 ENIKYGNE--DAS----EIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATS 1002 (1082)
Q Consensus 929 eNl~~~~~--~~~----d~ei~~al~~a~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlaLARAlL~~~~ILlLDEaTS 1002 (1082)
+|+.+... ..+ ++.+.++++..++.+. ......+||||||||++|||||+++|++|||||||+
T Consensus 85 e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~ 153 (302)
T TIGR01188 85 ENLEMMGRLYGLPKDEAEERAEELLELFELGEA-----------ADRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTT 153 (302)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhH-----------hCCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCc
Confidence 99976321 112 2234455555555432 223345799999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhc-CCceEEEEecCchhhhc-cCEEEEEeCCEEEEecChHHHhhh
Q 001411 1003 ALDTASENLIQEALDKLM-EGRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGSHEQLLRK 1061 (1082)
Q Consensus 1003 ~LD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~G~~~eLl~~ 1061 (1082)
+||+.+.+.+.+.|++.. +++|||++||+++.+.. ||+|++|++|++++.|+++++.++
T Consensus 154 gLD~~~~~~l~~~l~~~~~~g~tvi~~sH~~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~ 214 (302)
T TIGR01188 154 GLDPRTRRAIWDYIRALKEEGVTILLTTHYMEEADKLCDRIAIIDHGRIIAEGTPEELKRR 214 (302)
T ss_pred CCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHHHHh
Confidence 999999999999999875 47899999999999975 999999999999999999999764
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc. |
| >cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-41 Score=342.98 Aligned_cols=172 Identities=44% Similarity=0.748 Sum_probs=161.4
Q ss_pred EEEEEEEEECCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHHhCCCCCCcEEEECCeeCCCCCHHHHhhhceE
Q 001411 206 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGL 285 (1082)
Q Consensus 206 i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 285 (1082)
++++|++++|++...++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+...+++.++|
T Consensus 1 i~~~~l~~~~~~~~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (173)
T cd03246 1 LEVENVSFRYPGAEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGDHVGY 80 (173)
T ss_pred CEEEEEEEEcCCCCCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcccCCHHHHHhheEE
Confidence 47899999997533459999999999999999999999999999999999999999999999999988888888899999
Q ss_pred EccCCCcChhcHHHHHhcCCCCCCHHHHHHHHHHhchHHHHhcCCCCccccccCCCCCCChHHHHHHHHHHhcccCCCee
Q 001411 286 VSQEPALFATSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKIL 365 (1082)
Q Consensus 286 v~Q~~~l~~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~lp~g~~t~~g~~g~~LSgGqkqri~lARal~~~~~il 365 (1082)
++|++++|+.|++||+ ||||||||++||||++.+|+++
T Consensus 81 ~~q~~~~~~~tv~~~l------------------------------------------LS~G~~qrv~la~al~~~p~~l 118 (173)
T cd03246 81 LPQDDELFSGSIAENI------------------------------------------LSGGQRQRLGLARALYGNPRIL 118 (173)
T ss_pred ECCCCccccCcHHHHC------------------------------------------cCHHHHHHHHHHHHHhcCCCEE
Confidence 9999999999999997 9999999999999999999999
Q ss_pred EEeCcccCCCHHHHHHHHHHHHHHcC-CCeEEEEccCccccccCCEEEEEeCCEE
Q 001411 366 LLDEATSALDAESELIVQRALEKIMS-NRTTIVVAHRLSTVRDVDTIMVLKNGQV 419 (1082)
Q Consensus 366 llDEpts~LD~~~~~~i~~~l~~~~~-~~t~i~vtH~~~~~~~~d~i~~l~~G~i 419 (1082)
||||||++||+.+...+.+.|+++.+ ++|+|++||+++.+..||++++|++|++
T Consensus 119 llDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~d~v~~l~~G~i 173 (173)
T cd03246 119 VLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPETLASADRILVLEDGRV 173 (173)
T ss_pred EEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhCCEEEEEECCCC
Confidence 99999999999999999999988754 7899999999999888999999999974
|
They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra |
| >PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-40 Score=365.12 Aligned_cols=212 Identities=26% Similarity=0.463 Sum_probs=182.8
Q ss_pred EEEEEEEEECCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHHhCCCCCCcEEEECCeeCCCCCHHHHhhhceE
Q 001411 206 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGL 285 (1082)
Q Consensus 206 i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 285 (1082)
++++|++++|++ ..+|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|+++...+..++++.++|
T Consensus 3 l~~~~l~~~~~~--~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (255)
T PRK11231 3 LRTENLTVGYGT--KRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLARRLAL 80 (255)
T ss_pred EEEEeEEEEECC--EEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCcEEEECCEEhHHCCHHHHhhheEE
Confidence 789999999974 349999999999999999999999999999999999999999999999999887777788888999
Q ss_pred EccCCCcChh-cHHHHHhcCCCC-------C---CHHHHHHHHHHhchHHHHhcCCCCccccccCCCCCCChHHHHHHHH
Q 001411 286 VSQEPALFAT-SIANNILLGKED-------A---SMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAI 354 (1082)
Q Consensus 286 v~Q~~~l~~~-ti~~ni~~g~~~-------~---~~~~~~~~~~~~~~~~~i~~lp~g~~t~~g~~g~~LSgGqkqri~l 354 (1082)
++|++.++++ |+.||+.++... . ..+++.++++..++.+ ........||||||||++|
T Consensus 81 ~~q~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LS~G~~qrv~l 149 (255)
T PRK11231 81 LPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINH-----------LADRRLTDLSGGQRQRAFL 149 (255)
T ss_pred ecccCCCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHH-----------HHcCCcccCCHHHHHHHHH
Confidence 9999988876 999999886311 0 1223444444444433 2334556899999999999
Q ss_pred HHhcccCCCeeEEeCcccCCCHHHHHHHHHHHHHHc-CCCeEEEEccCccccc-cCCEEEEEeCCEEEEecCchhhhh
Q 001411 355 ARAVLRNPKILLLDEATSALDAESELIVQRALEKIM-SNRTTIVVAHRLSTVR-DVDTIMVLKNGQVVESGTHVDLIS 430 (1082)
Q Consensus 355 ARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~vtH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~ 430 (1082)
|||++.+|++|||||||++||+.+...+.+.|.++. +++|+|++||+++.+. .||++++|++|+++..|+++++..
T Consensus 150 aral~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 227 (255)
T PRK11231 150 AMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDLNQASRYCDHLVVLANGHVMAQGTPEEVMT 227 (255)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHhcCEEEEEECCeEEEEcCHHHhcC
Confidence 999999999999999999999999999999998875 4789999999999876 489999999999999999988765
|
|
| >TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-40 Score=362.57 Aligned_cols=221 Identities=24% Similarity=0.449 Sum_probs=183.8
Q ss_pred EEEEEEEEECCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHHhCCCCCCcEEEECCeeCCCCCHHH-Hhhhce
Q 001411 206 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKW-LREQMG 284 (1082)
Q Consensus 206 i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~-~~~~i~ 284 (1082)
|+++|+++.|++. ++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+... .++.++
T Consensus 3 i~~~~l~~~~~~~--~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~ 80 (242)
T TIGR03411 3 LYLEGLSVSFDGF--KALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIARAGIG 80 (242)
T ss_pred EEEEeeEEEcCCe--EEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCeecCCCCHHHHHhcCee
Confidence 7899999999753 4999999999999999999999999999999999999999999999999987776554 345799
Q ss_pred EEccCCCcChh-cHHHHHhcCCCCCC--HHH---HHHHHHHhchHHHHhcCCCCccccccCCCCCCChHHHHHHHHHHhc
Q 001411 285 LVSQEPALFAT-SIANNILLGKEDAS--MDR---VIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAV 358 (1082)
Q Consensus 285 ~v~Q~~~l~~~-ti~~ni~~g~~~~~--~~~---~~~~~~~~~~~~~i~~lp~g~~t~~g~~g~~LSgGqkqri~lARal 358 (1082)
|++|++.+|++ |++||+.++..... ... .........+.+.++.+ |++.........||||||||++||||+
T Consensus 81 ~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~LS~Ge~qrv~laral 158 (242)
T TIGR03411 81 RKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETI--GLADEADRLAGLLSHGQKQWLEIGMLL 158 (242)
T ss_pred EeccccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHc--CCchhhcCChhhCCHHHHHHHHHHHHH
Confidence 99999999987 99999987532110 000 00000111123344444 555556667789999999999999999
Q ss_pred ccCCCeeEEeCcccCCCHHHHHHHHHHHHHHcCCCeEEEEccCcccccc-CCEEEEEeCCEEEEecCchhhhh
Q 001411 359 LRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRD-VDTIMVLKNGQVVESGTHVDLIS 430 (1082)
Q Consensus 359 ~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~ 430 (1082)
+.+|+++||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 159 ~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~~~~~~~~~~~~~ 231 (242)
T TIGR03411 159 MQDPKLLLLDEPVAGMTDEETEKTAELLKSLAGKHSVVVVEHDMEFVRSIADKVTVLHQGSVLAEGSLDQVQA 231 (242)
T ss_pred hcCCCEEEecCCccCCCHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCeEEeeCCHHHHhc
Confidence 9999999999999999999999999999998777899999999999865 99999999999999999888764
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-40 Score=354.09 Aligned_cols=202 Identities=35% Similarity=0.589 Sum_probs=175.7
Q ss_pred EEEEeEEEECCCCCCcccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCccCCCCCHHHHhcceE
Q 001411 835 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRKIG 914 (1082)
Q Consensus 835 I~~~~Vs~~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR~~i~ 914 (1082)
++++||+++|+ . .++|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++.+.+ .+|+.++
T Consensus 1 ~~~~~l~~~~~---~--~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~--~~~~~i~ 73 (213)
T TIGR01277 1 LALDKVRYEYE---H--LPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLA--PYQRPVS 73 (213)
T ss_pred CeEEeeeEEeC---C--cceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccCC--hhccceE
Confidence 36899999995 1 468999999999999999999999999999999999999999999999987654 4678899
Q ss_pred EEcccCccccc-cHHHHhccCC-CC-----CCHHHHHHHHHHhcHHHHHhhCcccccccccCCCCCCChhHHHHHHHHHH
Q 001411 915 LVQQEPALFST-TIYENIKYGN-ED-----ASEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARA 987 (1082)
Q Consensus 915 ~VpQdp~Lf~g-TIreNl~~~~-~~-----~~d~ei~~al~~a~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlaLARA 987 (1082)
|+||+|.+|.+ |+++|+.++. +. ..++++.++++..++.+...+.| .+||||||||++||||
T Consensus 74 ~v~q~~~~~~~~t~~en~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrl~lara 142 (213)
T TIGR01277 74 MLFQENNLFAHLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQQVGIADYLDRLP-----------EQLSGGQRQRVALARC 142 (213)
T ss_pred EEeccCccCCCCcHHHHHHhHhhccCCccHHHHHHHHHHHHHcCcHHHhhCCc-----------ccCCHHHHHHHHHHHH
Confidence 99999999975 9999997532 11 12345667778877766655543 4799999999999999
Q ss_pred HccCCCEEEeeCCCCCCCHHHHHHHHHHHHHhcC--CceEEEEecCchhhhc-cCEEEEEeCCEEEEecC
Q 001411 988 ILKNPSILLLDEATSALDTASENLIQEALDKLME--GRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGS 1054 (1082)
Q Consensus 988 lL~~~~ILlLDEaTS~LD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~G~ 1054 (1082)
++++|+|+||||||++||+++.+.+.+.|++..+ ++|+|+|||+++.+.. ||++++|++|++++.|.
T Consensus 143 l~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~tii~vsh~~~~~~~~~d~v~~l~~g~i~~~~~ 212 (213)
T TIGR01277 143 LVRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHLSDARAIASQIAVVSQGKIKVVSD 212 (213)
T ss_pred HhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCeEEEEECCeEEEecC
Confidence 9999999999999999999999999999998753 7899999999999865 99999999999999874
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found. |
| >COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-40 Score=368.78 Aligned_cols=214 Identities=34% Similarity=0.565 Sum_probs=187.8
Q ss_pred cEEEEeEEEECCCCCCcccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCccCCCCCHHHHhcce
Q 001411 834 NIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRKI 913 (1082)
Q Consensus 834 ~I~~~~Vs~~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR~~i 913 (1082)
.|+++||+.+|.. +..+|+||||+|++||.+|++||||||||||+++|+|++.|++|+|.++|.|...- ...+|+++
T Consensus 4 ~i~~~~l~k~~~~--~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~-~~~~~~~i 80 (293)
T COG1131 4 VIEVRNLTKKYGG--DKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKE-PAKVRRRI 80 (293)
T ss_pred eeeecceEEEeCC--CCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccC-HHHHHhhe
Confidence 4789999999962 35799999999999999999999999999999999999999999999999998765 77889999
Q ss_pred EEEcccCccccc-cHHHHhccCCC------CCCHHHHHHHHHHhcHHHHHhhCcccccccccCCCCCCChhHHHHHHHHH
Q 001411 914 GLVQQEPALFST-TIYENIKYGNE------DASEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIAR 986 (1082)
Q Consensus 914 ~~VpQdp~Lf~g-TIreNl~~~~~------~~~d~ei~~al~~a~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlaLAR 986 (1082)
|||||+|.+++. |++|||.+... ...++.+.+.++..++.+.- ......||+|||||++||+
T Consensus 81 gy~~~~~~~~~~lT~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~-----------~~~~~~lS~G~kqrl~ia~ 149 (293)
T COG1131 81 GYVPQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELLELFGLEDKA-----------NKKVRTLSGGMKQRLSIAL 149 (293)
T ss_pred EEEccCCCCCccccHHHHHHHHHHHhCCChhHHHHHHHHHHHHcCCchhh-----------CcchhhcCHHHHHHHHHHH
Confidence 999999998865 99999987421 12245677788887775521 2234569999999999999
Q ss_pred HHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHhcC-C-ceEEEEecCchhhhc-cCEEEEEeCCEEEEecChHHHhhh
Q 001411 987 AILKNPSILLLDEATSALDTASENLIQEALDKLME-G-RTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGSHEQLLRK 1061 (1082)
Q Consensus 987 AlL~~~~ILlLDEaTS~LD~~te~~I~~~l~~~~~-~-~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~G~~~eLl~~ 1061 (1082)
||+.+|++|||||||++||+.+...+.+.|++..+ + +||++.||.++.+.. ||+|++|++|+++..|+++++...
T Consensus 150 aL~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~e~~~~~d~v~il~~G~~~~~g~~~~l~~~ 227 (293)
T COG1131 150 ALLHDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILEEAEELCDRVIILNDGKIIAEGTPEELKEK 227 (293)
T ss_pred HHhcCCCEEEECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHHHHHHhCCEEEEEeCCEEEEeCCHHHHHHh
Confidence 99999999999999999999999999999999864 5 799999999999987 999999999999999999998753
|
|
| >cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-41 Score=359.10 Aligned_cols=204 Identities=34% Similarity=0.502 Sum_probs=170.8
Q ss_pred EEEEEEEEECCCCC--CccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHHhCCCCCCcEEEECCeeCCCCCHHHHhhhc
Q 001411 206 IEFSEVCFAYPSRP--HMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQM 283 (1082)
Q Consensus 206 i~~~~v~~~y~~~~--~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i 283 (1082)
++++|++++|++.. .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++.. +++.+
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~-----~~~~i 75 (220)
T cd03293 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTG-----PGPDR 75 (220)
T ss_pred CeEEEEEEEcCCCCcceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcc-----ccCcE
Confidence 46899999997421 359999999999999999999999999999999999999999999999998763 35679
Q ss_pred eEEccCCCcCh-hcHHHHHhcCCCC--CC----HHHHHHHHHHhchHHHHhcCCCCccccccCCCCCCChHHHHHHHHHH
Q 001411 284 GLVSQEPALFA-TSIANNILLGKED--AS----MDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIAR 356 (1082)
Q Consensus 284 ~~v~Q~~~l~~-~ti~~ni~~g~~~--~~----~~~~~~~~~~~~~~~~i~~lp~g~~t~~g~~g~~LSgGqkqri~lAR 356 (1082)
+||+|++.+|+ .|++||+.++... .. .+++.+.++..++.+ .......+||||||||++|||
T Consensus 76 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LSgG~~qrl~la~ 144 (220)
T cd03293 76 GYVFQQDALLPWLTVLDNVALGLELQGVPKAEARERAEELLELVGLSG-----------FENAYPHQLSGGMRQRVALAR 144 (220)
T ss_pred EEEecccccccCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChh-----------hhhCCcccCCHHHHHHHHHHH
Confidence 99999999887 5999999875321 11 123344444444433 334444689999999999999
Q ss_pred hcccCCCeeEEeCcccCCCHHHHHHHHHHHHHHc--CCCeEEEEccCccccc-cCCEEEEEe--CCEEEEecCc
Q 001411 357 AVLRNPKILLLDEATSALDAESELIVQRALEKIM--SNRTTIVVAHRLSTVR-DVDTIMVLK--NGQVVESGTH 425 (1082)
Q Consensus 357 al~~~~~illlDEpts~LD~~~~~~i~~~l~~~~--~~~t~i~vtH~~~~~~-~~d~i~~l~--~G~i~~~g~~ 425 (1082)
||+.+|+++||||||++||+.+...+.+.|+++. .++|+|++||+++.+. .||++++|+ +|++++.++.
T Consensus 145 al~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~G~i~~~~~~ 218 (220)
T cd03293 145 ALAVDPDVLLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHDIDEAVFLADRVVVLSARPGRIVAEVEV 218 (220)
T ss_pred HHHcCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCCCEEEEEEEe
Confidence 9999999999999999999999999999999873 3789999999999875 589999999 7999988764
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-40 Score=375.15 Aligned_cols=223 Identities=26% Similarity=0.388 Sum_probs=183.5
Q ss_pred cEEEEEEEEECCCC-----------CCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHHhCCCCCCcEEEECCeeCCC
Q 001411 205 QIEFSEVCFAYPSR-----------PHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKS 273 (1082)
Q Consensus 205 ~i~~~~v~~~y~~~-----------~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~ 273 (1082)
-++++|++++|+.. ...+++|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.+
T Consensus 8 ~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~G~~i~~ 87 (331)
T PRK15079 8 LLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLLG 87 (331)
T ss_pred eEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCCcEEEECCEECCc
Confidence 58999999999631 2349999999999999999999999999999999999999999999999999988
Q ss_pred CCHHH---HhhhceEEccCC--CcCh-hcHHHHHhcCC----CCCCHHH----HHHHHHHhchHHHHhcCCCCccccccC
Q 001411 274 LQLKW---LREQMGLVSQEP--ALFA-TSIANNILLGK----EDASMDR----VIEAAKAANAHSFVEGLPDGYQTQVGE 339 (1082)
Q Consensus 274 ~~~~~---~~~~i~~v~Q~~--~l~~-~ti~~ni~~g~----~~~~~~~----~~~~~~~~~~~~~i~~lp~g~~t~~g~ 339 (1082)
.+... +|++|+||+|+| .+++ .||.|||.++. +..+.++ +.+.++..++. +.....
T Consensus 88 ~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~----------~~~~~~ 157 (331)
T PRK15079 88 MKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLL----------PNLINR 157 (331)
T ss_pred CCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCC----------hHHhcC
Confidence 76543 567899999998 4664 59999997532 1122222 22333333331 112345
Q ss_pred CCCCCChHHHHHHHHHHhcccCCCeeEEeCcccCCCHHHHHHHHHHHHHHcC--CCeEEEEccCcccccc-CCEEEEEeC
Q 001411 340 GGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMS--NRTTIVVAHRLSTVRD-VDTIMVLKN 416 (1082)
Q Consensus 340 ~g~~LSgGqkqri~lARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~vtH~~~~~~~-~d~i~~l~~ 416 (1082)
...+|||||||||+|||||+.+|++||+||||++||+.++..+.+.|+++.+ +.|+|+|||+++.+.. ||+|++|++
T Consensus 158 ~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl~~~~~~~dri~vl~~ 237 (331)
T PRK15079 158 YPHEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLAVVKHISDRVLVMYL 237 (331)
T ss_pred CcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEEC
Confidence 5678999999999999999999999999999999999999999999998753 7899999999999875 999999999
Q ss_pred CEEEEecCchhhhhcC-chhHH
Q 001411 417 GQVVESGTHVDLISKG-GEYAA 437 (1082)
Q Consensus 417 G~i~~~g~~~~l~~~~-~~~~~ 437 (1082)
|++++.|+.+++.++. ..|.+
T Consensus 238 G~ive~g~~~~i~~~~~~py~~ 259 (331)
T PRK15079 238 GHAVELGTYDEVYHNPLHPYTK 259 (331)
T ss_pred CEEEEEcCHHHHHcCCCCHHHH
Confidence 9999999999998653 34544
|
|
| >PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-40 Score=367.21 Aligned_cols=213 Identities=30% Similarity=0.458 Sum_probs=178.2
Q ss_pred EEEEEEEEECCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHHhCCCCCCcEEEECCeeCC--CCCHHHHhhhc
Q 001411 206 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLK--SLQLKWLREQM 283 (1082)
Q Consensus 206 i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~--~~~~~~~~~~i 283 (1082)
++++|++++|++ ..+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++. ..+...+|+.|
T Consensus 2 l~~~~l~~~~~~--~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~i 79 (271)
T PRK13638 2 LATSDLWFRYQD--EPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLALRQQV 79 (271)
T ss_pred eEEEEEEEEcCC--cccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCccEEEECCEEcccccCCHHHHHhhe
Confidence 689999999974 34999999999999999999999999999999999999999999999999985 23445677889
Q ss_pred eEEccCCC--cChhcHHHHHhcCCC--CCCHH----HHHHHHHHhchHHHHhcCCCCccccccCCCCCCChHHHHHHHHH
Q 001411 284 GLVSQEPA--LFATSIANNILLGKE--DASMD----RVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIA 355 (1082)
Q Consensus 284 ~~v~Q~~~--l~~~ti~~ni~~g~~--~~~~~----~~~~~~~~~~~~~~i~~lp~g~~t~~g~~g~~LSgGqkqri~lA 355 (1082)
+|++|++. ++..|+.+|+.++.. ..+.+ ++.++++..++.++ ......+||||||||++||
T Consensus 80 ~~v~q~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LSgG~~qrl~la 148 (271)
T PRK13638 80 ATVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQHF-----------RHQPIQCLSHGQKKRVAIA 148 (271)
T ss_pred EEEeeChhhccccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHhH-----------hcCCchhCCHHHHHHHHHH
Confidence 99999985 567799999987421 11222 23334444443322 2344568999999999999
Q ss_pred HhcccCCCeeEEeCcccCCCHHHHHHHHHHHHHHc-CCCeEEEEccCccccc-cCCEEEEEeCCEEEEecCchhhhhc
Q 001411 356 RAVLRNPKILLLDEATSALDAESELIVQRALEKIM-SNRTTIVVAHRLSTVR-DVDTIMVLKNGQVVESGTHVDLISK 431 (1082)
Q Consensus 356 Ral~~~~~illlDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~vtH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~~ 431 (1082)
|||+.+|+++||||||++||+.+...+.+.|.++. +++|+|++||+++.+. .||++++|++|++++.|+++++...
T Consensus 149 raL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 226 (271)
T PRK13638 149 GALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDIDLIYEISDAVYVLRQGQILTHGAPGEVFAC 226 (271)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 99999999999999999999999999999999875 4789999999999985 4999999999999999998887654
|
|
| >cd03290 ABCC_SUR1_N The SUR domain 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-40 Score=354.31 Aligned_cols=210 Identities=28% Similarity=0.446 Sum_probs=184.5
Q ss_pred EEEEEEEECCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHHhCCCCCCcEEEECCeeCCCCCH----HHHhhh
Q 001411 207 EFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQL----KWLREQ 282 (1082)
Q Consensus 207 ~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~----~~~~~~ 282 (1082)
.+.|+.|+|++. .++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+. ...|+.
T Consensus 2 ~~~~~~~~~~~~-~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ 80 (218)
T cd03290 2 QVTNGYFSWGSG-LATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSRNRYS 80 (218)
T ss_pred eeeeeEEecCCC-CcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCcccccccccccchhhcce
Confidence 578999999754 459999999999999999999999999999999999999999999999998765432 235677
Q ss_pred ceEEccCCCcChhcHHHHHhcCCCCCCHHHHHHHHHHhchHHHHhcCCCCccccccCCCCCCChHHHHHHHHHHhcccCC
Q 001411 283 MGLVSQEPALFATSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNP 362 (1082)
Q Consensus 283 i~~v~Q~~~l~~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~lp~g~~t~~g~~g~~LSgGqkqri~lARal~~~~ 362 (1082)
++|++|++.+|+.|++||+.++.+. ..++..++++..++.+.+..+|.|+++.++....+||||||||++||||++.+|
T Consensus 81 i~~~~q~~~~~~~t~~~nl~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p 159 (218)
T cd03290 81 VAYAAQKPWLLNATVEENITFGSPF-NKQRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRICVARALYQNT 159 (218)
T ss_pred EEEEcCCCccccccHHHHHhhcCcC-CHHHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHHHHHHHHHHHhhCC
Confidence 9999999999988999999987543 345566777888888888889999999999999999999999999999999999
Q ss_pred CeeEEeCcccCCCHHHHHHHHH--HHHHHc-CCCeEEEEccCccccccCCEEEEEeCCE
Q 001411 363 KILLLDEATSALDAESELIVQR--ALEKIM-SNRTTIVVAHRLSTVRDVDTIMVLKNGQ 418 (1082)
Q Consensus 363 ~illlDEpts~LD~~~~~~i~~--~l~~~~-~~~t~i~vtH~~~~~~~~d~i~~l~~G~ 418 (1082)
+++||||||++||+.+...+.+ .+..+. .++|+|++||+++.+..||++++|++|+
T Consensus 160 ~illlDEPt~~LD~~~~~~l~~~~ll~~~~~~~~tii~~sH~~~~~~~~d~i~~l~~G~ 218 (218)
T cd03290 160 NIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVTHKLQYLPHADWIIAMKDGS 218 (218)
T ss_pred CEEEEeCCccccCHHHHHHHHHHHHHHHHhcCCCEEEEEeCChHHHhhCCEEEEecCCC
Confidence 9999999999999999988887 455443 3689999999999988899999999874
|
The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. |
| >PRK14240 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-40 Score=362.81 Aligned_cols=219 Identities=32% Similarity=0.558 Sum_probs=182.8
Q ss_pred CcEEEEEEEEECCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHHhCCCC-----CCcEEEECCeeCCC--CCH
Q 001411 204 GQIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEP-----TSGKILLDGHDLKS--LQL 276 (1082)
Q Consensus 204 ~~i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~-----~~G~i~~~g~~~~~--~~~ 276 (1082)
+.++++|+++.|++. ++++|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|+++.. .+.
T Consensus 2 ~~l~~~~l~~~~~~~--~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~ 79 (250)
T PRK14240 2 GKISVKDLDLFYGDF--QALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDIDV 79 (250)
T ss_pred CeEEEEEEEEEECCc--eeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccch
Confidence 358999999999753 499999999999999999999999999999999999763 69999999999864 345
Q ss_pred HHHhhhceEEccCCCcChhcHHHHHhcCCCCC---C----HHHHHHHHHHhchHHHHhcCCCCccccccCCCCCCChHHH
Q 001411 277 KWLREQMGLVSQEPALFATSIANNILLGKEDA---S----MDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQK 349 (1082)
Q Consensus 277 ~~~~~~i~~v~Q~~~l~~~ti~~ni~~g~~~~---~----~~~~~~~~~~~~~~~~i~~lp~g~~t~~g~~g~~LSgGqk 349 (1082)
..+|+.++|++|++.+|+.|++||+.++.... . .+++.++++..++.+ ++.......+.+||||||
T Consensus 80 ~~~~~~i~~~~q~~~~~~~t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~l~~~~~~~~~~LS~G~~ 152 (250)
T PRK14240 80 NQLRKRVGMVFQQPNPFPMSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWD-------EVKDRLKKSALGLSGGQQ 152 (250)
T ss_pred HHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCch-------hhHHHHhcCCCCCCHHHH
Confidence 56788999999999999899999998763211 1 122333344443322 222334556778999999
Q ss_pred HHHHHHHhcccCCCeeEEeCcccCCCHHHHHHHHHHHHHHcCCCeEEEEccCcccccc-CCEEEEEeCCEEEEecCchhh
Q 001411 350 QRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRD-VDTIMVLKNGQVVESGTHVDL 428 (1082)
Q Consensus 350 qri~lARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l 428 (1082)
||++|||||+.+|+++||||||++||+.+...+.+.|+++.+++|+|++||+++.+.. ||++++|++|++++.|+++++
T Consensus 153 qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 232 (250)
T PRK14240 153 QRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELKKDYTIVIVTHNMQQASRISDKTAFFLNGEIVEFGDTVDL 232 (250)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEEeCHHHHHhhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999988778899999999998765 899999999999999998887
Q ss_pred hhc
Q 001411 429 ISK 431 (1082)
Q Consensus 429 ~~~ 431 (1082)
...
T Consensus 233 ~~~ 235 (250)
T PRK14240 233 FTN 235 (250)
T ss_pred HhC
Confidence 643
|
|
| >PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-40 Score=361.92 Aligned_cols=227 Identities=27% Similarity=0.440 Sum_probs=186.4
Q ss_pred cEEEEeEEEECCCCCCcccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccC----CccEEEECCccCCCCCHHHH
Q 001411 834 NIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDP----ISGTVLIDGYDIRTLNLRSL 909 (1082)
Q Consensus 834 ~I~~~~Vs~~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p----~~G~I~idG~di~~i~~~~l 909 (1082)
.|+++||+++|. .++|+|+||+|++||++||+|+||||||||+++|+|+++| ++|+|.+||.+++.. +..
T Consensus 4 ~l~~~~l~~~~~----~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~~--~~~ 77 (254)
T PRK10418 4 QIELRNIALQAA----QPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPC--ALR 77 (254)
T ss_pred EEEEeCeEEEec----cceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeecccc--ccc
Confidence 489999999992 3699999999999999999999999999999999999999 999999999998632 223
Q ss_pred hcceEEEcccCc-ccc--ccHHHHhccC----CCCCCHHHHHHHHHHhcHHHHHhhCcccccccccCCCCCCChhHHHHH
Q 001411 910 RRKIGLVQQEPA-LFS--TTIYENIKYG----NEDASEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRV 982 (1082)
Q Consensus 910 R~~i~~VpQdp~-Lf~--gTIreNl~~~----~~~~~d~ei~~al~~a~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrl 982 (1082)
++.++||||+|. .|. .|+.+|+... .....+++++++++.+++.++ ++.++.....||||||||+
T Consensus 78 ~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~--------~~~~~~~~~~LS~Gq~qrv 149 (254)
T PRK10418 78 GRKIATIMQNPRSAFNPLHTMHTHARETCLALGKPADDATLTAALEAVGLENA--------ARVLKLYPFEMSGGMLQRM 149 (254)
T ss_pred cceEEEEecCCccccCccccHHHHHHHHHHHcCCChHHHHHHHHHHHcCCCCh--------hhhhhcCCcccCHHHHHHH
Confidence 467999999985 343 4887776431 112234556677777666432 1133455678999999999
Q ss_pred HHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHhcC--CceEEEEecCchhhhc-cCEEEEEeCCEEEEecChHHHh
Q 001411 983 AIARAILKNPSILLLDEATSALDTASENLIQEALDKLME--GRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGSHEQLL 1059 (1082)
Q Consensus 983 aLARAlL~~~~ILlLDEaTS~LD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~G~~~eLl 1059 (1082)
+|||||+++|+||||||||++||+.+.+.+.+.|++..+ ++|+|++||+++.+.. ||+|++|++|++++.|+++++.
T Consensus 150 ~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 229 (254)
T PRK10418 150 MIALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDMGVVARLADDVAVMSHGRIVEQGDVETLF 229 (254)
T ss_pred HHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHh
Confidence 999999999999999999999999999999999998753 7899999999999865 9999999999999999999998
Q ss_pred hhccc-hHHHHHHHhh
Q 001411 1060 RKENG-IYKQLIRLQQ 1074 (1082)
Q Consensus 1060 ~~~~g-~f~~l~~~~~ 1074 (1082)
+++.. .++.++..+.
T Consensus 230 ~~~~~~~~~~~~~~~~ 245 (254)
T PRK10418 230 NAPKHAVTRSLVSAHL 245 (254)
T ss_pred hCCCCHHHHHHHHhhh
Confidence 75444 4555666544
|
|
| >cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-41 Score=359.00 Aligned_cols=214 Identities=26% Similarity=0.419 Sum_probs=170.7
Q ss_pred EEEEeEEEECCCCC-CcccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccc---CCccEEEECCccCCCCCHHHHh
Q 001411 835 IELRNVSFKYPVRP-DITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYD---PISGTVLIDGYDIRTLNLRSLR 910 (1082)
Q Consensus 835 I~~~~Vs~~Y~~~~-~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~---p~~G~I~idG~di~~i~~~~lR 910 (1082)
+.|+||+++|+... ..++|+|+||+|++||++||+|+||||||||+++|.|+++ |++|+|.+||.++. ...+|
T Consensus 4 ~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~---~~~~~ 80 (226)
T cd03234 4 LPWWDVGLKAKNWNKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRK---PDQFQ 80 (226)
T ss_pred ceeecceeeeecCccccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECC---hHHhc
Confidence 67999999997432 3579999999999999999999999999999999999999 99999999999875 34678
Q ss_pred cceEEEcccCccccc-cHHHHhccCCCCCCHHHHHHHHHHhcHHH-HHhhCcccccccccCCCCCCChhHHHHHHHHHHH
Q 001411 911 RKIGLVQQEPALFST-TIYENIKYGNEDASEIELMKATKAANAHG-FISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAI 988 (1082)
Q Consensus 911 ~~i~~VpQdp~Lf~g-TIreNl~~~~~~~~d~ei~~al~~a~l~~-~i~~lp~gldt~v~e~G~~LSgGQrQrlaLARAl 988 (1082)
++++|+||++.+|++ |++||+.++...................+ .++.+ +++.........||||||||++|||||
T Consensus 81 ~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrl~laral 158 (226)
T cd03234 81 KCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDL--ALTRIGGNLVKGISGGERRRVSIAVQL 158 (226)
T ss_pred ccEEEeCCCCccCcCCcHHHHHHHHHHhhcccccchHHHHHHHHHHHHHhh--cchhhhcccccCcCHHHHHHHHHHHHH
Confidence 999999999999987 99999986421110000000011111111 22221 233233345578999999999999999
Q ss_pred ccCCCEEEeeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEecCc-hhh-hccCEEEEEeCCEEEEec
Q 001411 989 LKNPSILLLDEATSALDTASENLIQEALDKLM-EGRTTIMVAHRL-STI-RNADKIAVLQQGKVAEIG 1053 (1082)
Q Consensus 989 L~~~~ILlLDEaTS~LD~~te~~I~~~l~~~~-~~~TvI~IaHrl-~ti-~~~DrI~Vl~~G~ive~G 1053 (1082)
+++|++|||||||++||+.+.+.+.+.|++.. +++|+|++||++ +.+ ..||+|++|++|++++.|
T Consensus 159 ~~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~g 226 (226)
T cd03234 159 LWDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRIVILTIHQPRSDLFRLFDRILLLSSGEIVYSG 226 (226)
T ss_pred HhCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHhCCEEEEEeCCEEEecC
Confidence 99999999999999999999999999999875 478999999998 465 559999999999999876
|
The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in |
| >TIGR01978 sufC FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-40 Score=362.97 Aligned_cols=212 Identities=24% Similarity=0.351 Sum_probs=175.2
Q ss_pred EEEEeEEEECCCCCCcccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHhccc--cCCccEEEECCccCCCCCHHHH-hc
Q 001411 835 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFY--DPISGTVLIDGYDIRTLNLRSL-RR 911 (1082)
Q Consensus 835 I~~~~Vs~~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~--~p~~G~I~idG~di~~i~~~~l-R~ 911 (1082)
|+++||+++|+ +.++|+|+||+|++||++||+|+||||||||+++|.|+. +|++|+|.+||.++...+.... |.
T Consensus 1 l~~~~l~~~~~---~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 77 (243)
T TIGR01978 1 LKIKDLHVSVE---DKEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDERARA 77 (243)
T ss_pred CeEeeEEEEEC---CEEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCCHHHhhcc
Confidence 57899999996 346999999999999999999999999999999999994 7999999999999988877664 45
Q ss_pred ceEEEcccCccccc-cHHHHhccCCCC---------CC----HHHHHHHHHHhcHHHHHhhCcccccccccCCCC-CCCh
Q 001411 912 KIGLVQQEPALFST-TIYENIKYGNED---------AS----EIELMKATKAANAHGFISRMPEGYQSHVGDRGV-QLSG 976 (1082)
Q Consensus 912 ~i~~VpQdp~Lf~g-TIreNl~~~~~~---------~~----d~ei~~al~~a~l~~~i~~lp~gldt~v~e~G~-~LSg 976 (1082)
.++|+||+|.+|++ |+++|+.+.... .+ ++.+.++++..++.+ . ....... .|||
T Consensus 78 ~i~~v~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~---~~~~~~~~~LS~ 147 (243)
T TIGR01978 78 GLFLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDE-------E---FLNRSVNEGFSG 147 (243)
T ss_pred ceEeeeccccccCCcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCch-------h---hcccccccCcCH
Confidence 69999999999876 899998653110 11 122333343433321 1 1122222 4999
Q ss_pred hHHHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEecCchhhhc--cCEEEEEeCCEEEEec
Q 001411 977 GQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLM-EGRTTIMVAHRLSTIRN--ADKIAVLQQGKVAEIG 1053 (1082)
Q Consensus 977 GQrQrlaLARAlL~~~~ILlLDEaTS~LD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~~--~DrI~Vl~~G~ive~G 1053 (1082)
|||||++|||||+++|++|||||||++||+.+.+.+.+.|++.. +++|||+|||+++.+.. ||+|++|++|++++.|
T Consensus 148 G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~~~~~~~~~~d~i~~l~~G~i~~~g 227 (243)
T TIGR01978 148 GEKKRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQRLLNYIKPDYVHVLLDGRIVKSG 227 (243)
T ss_pred HHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCcEEEEEEecHHHHHhhcCCeEEEEeCCEEEEec
Confidence 99999999999999999999999999999999999999999875 47899999999999975 7999999999999999
Q ss_pred ChHHHh
Q 001411 1054 SHEQLL 1059 (1082)
Q Consensus 1054 ~~~eLl 1059 (1082)
+++++.
T Consensus 228 ~~~~~~ 233 (243)
T TIGR01978 228 DVELAK 233 (243)
T ss_pred CHHHhc
Confidence 998654
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA. |
| >PRK14237 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-40 Score=365.32 Aligned_cols=220 Identities=29% Similarity=0.462 Sum_probs=185.3
Q ss_pred CCcEEEEEEEEECCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHHhCCC-----CCCcEEEECCeeCCC--CC
Q 001411 203 AGQIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYE-----PTSGKILLDGHDLKS--LQ 275 (1082)
Q Consensus 203 ~~~i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~-----~~~G~i~~~g~~~~~--~~ 275 (1082)
...|+++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++ |++|+|.++|.++.. .+
T Consensus 18 ~~~l~~~nl~~~~~~--~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~ 95 (267)
T PRK14237 18 EIALSTKDLHVYYGK--KEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEIN 95 (267)
T ss_pred CeEEEEeeEEEEECC--eeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccccCC
Confidence 346999999999974 359999999999999999999999999999999999996 589999999999864 34
Q ss_pred HHHHhhhceEEccCCCcChhcHHHHHhcCCCCC---CH----HHHHHHHHHhchHHHHhcCCCCccccccCCCCCCChHH
Q 001411 276 LKWLREQMGLVSQEPALFATSIANNILLGKEDA---SM----DRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQ 348 (1082)
Q Consensus 276 ~~~~~~~i~~v~Q~~~l~~~ti~~ni~~g~~~~---~~----~~~~~~~~~~~~~~~i~~lp~g~~t~~g~~g~~LSgGq 348 (1082)
...+++.|+|++|++.+|+.|++||+.++.... .. +++.++++..++.+. .++..+..+.+|||||
T Consensus 96 ~~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-------i~~~~~~~~~~LS~G~ 168 (267)
T PRK14237 96 VYEMRKHIGMVFQRPNPFAKSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQ-------VKDDLHKSALTLSGGQ 168 (267)
T ss_pred hHHHhcceEEEecCCccccccHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCch-------hhhhhcCCcccCCHHH
Confidence 556788899999999999899999998753211 11 223333444433222 2234567778999999
Q ss_pred HHHHHHHHhcccCCCeeEEeCcccCCCHHHHHHHHHHHHHHcCCCeEEEEccCccccc-cCCEEEEEeCCEEEEecCchh
Q 001411 349 KQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVR-DVDTIMVLKNGQVVESGTHVD 427 (1082)
Q Consensus 349 kqri~lARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~vtH~~~~~~-~~d~i~~l~~G~i~~~g~~~~ 427 (1082)
|||++||||++++|+++||||||++||+.+.+.+.+.|.++.++.|+|++||+++.+. .||++++|++|++++.|++++
T Consensus 169 ~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 248 (267)
T PRK14237 169 QQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELKKNYTIIIVTHNMQQAARASDYTAFFYLGDLIEYDKTRN 248 (267)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhcCEEEEEECCEEEEeCCHHH
Confidence 9999999999999999999999999999999999999998877789999999999875 599999999999999999988
Q ss_pred hhhc
Q 001411 428 LISK 431 (1082)
Q Consensus 428 l~~~ 431 (1082)
+...
T Consensus 249 ~~~~ 252 (267)
T PRK14237 249 IFTN 252 (267)
T ss_pred HhcC
Confidence 8653
|
|
| >TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-41 Score=361.70 Aligned_cols=211 Identities=28% Similarity=0.452 Sum_probs=178.3
Q ss_pred EEEEEEEEECCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHHhCCCCCCcEEEECCeeCCCCCHHH-Hhhhce
Q 001411 206 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKW-LREQMG 284 (1082)
Q Consensus 206 i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~-~~~~i~ 284 (1082)
|+++|+++.|++. ++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.++...+... .++.++
T Consensus 1 l~~~~l~~~~~~~--~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~ 78 (230)
T TIGR03410 1 LEVSNLNVYYGQS--HILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERARAGIA 78 (230)
T ss_pred CEEEeEEEEeCCe--EEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHHhCeE
Confidence 4789999999753 4999999999999999999999999999999999999999999999999998776554 466899
Q ss_pred EEccCCCcChh-cHHHHHhcCCCCC--CHH-HHHHHHHHhchHHHHhcCCCCccccccCCCCCCChHHHHHHHHHHhccc
Q 001411 285 LVSQEPALFAT-SIANNILLGKEDA--SMD-RVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLR 360 (1082)
Q Consensus 285 ~v~Q~~~l~~~-ti~~ni~~g~~~~--~~~-~~~~~~~~~~~~~~i~~lp~g~~t~~g~~g~~LSgGqkqri~lARal~~ 360 (1082)
|++|++.+|+. |++||+.++.... ..+ ...++++..+ ++.........+||||||||++|||||++
T Consensus 79 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~----------~l~~~~~~~~~~LS~G~~qrv~la~al~~ 148 (230)
T TIGR03410 79 YVPQGREIFPRLTVEENLLTGLAALPRRSRKIPDEIYELFP----------VLKEMLGRRGGDLSGGQQQQLAIARALVT 148 (230)
T ss_pred EeccCCcccCCCcHHHHHHHHHHhcCcchHHHHHHHHHHHH----------hHHHHhhCChhhCCHHHHHHHHHHHHHhc
Confidence 99999999986 9999998764321 111 1122222221 12233455667899999999999999999
Q ss_pred CCCeeEEeCcccCCCHHHHHHHHHHHHHHcC--CCeEEEEccCcccccc-CCEEEEEeCCEEEEecCchhh
Q 001411 361 NPKILLLDEATSALDAESELIVQRALEKIMS--NRTTIVVAHRLSTVRD-VDTIMVLKNGQVVESGTHVDL 428 (1082)
Q Consensus 361 ~~~illlDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l 428 (1082)
+|+++||||||++||+.+.+.+.+.|.++.+ ++|+|++||+++.+.. ||+|+++++|++++.|+++++
T Consensus 149 ~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~g~i~~~~~~~~~ 219 (230)
T TIGR03410 149 RPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLDFARELADRYYVMERGRVVASGAGDEL 219 (230)
T ss_pred CCCEEEecCCcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHc
Confidence 9999999999999999999999999998754 6899999999999875 899999999999999998887
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >TIGR02673 FtsE cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-41 Score=356.55 Aligned_cols=201 Identities=31% Similarity=0.519 Sum_probs=170.1
Q ss_pred EEEEEEEEECCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHHhCCCCCCcEEEECCeeCCCCCHH---HHhhh
Q 001411 206 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLK---WLREQ 282 (1082)
Q Consensus 206 i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~---~~~~~ 282 (1082)
++++|++++|+++ ..+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++..++.. .+++.
T Consensus 2 l~~~~l~~~~~~~-~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 80 (214)
T TIGR02673 2 IEFHNVSKAYPGG-VAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLLRRR 80 (214)
T ss_pred EEEEeeeEEeCCC-ceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHhh
Confidence 6899999999532 3599999999999999999999999999999999999999999999999999876543 46778
Q ss_pred ceEEccCCCcCh-hcHHHHHhcCCCC--C----CHHHHHHHHHHhchHHHHhcCCCCccccccCCCCCCChHHHHHHHHH
Q 001411 283 MGLVSQEPALFA-TSIANNILLGKED--A----SMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIA 355 (1082)
Q Consensus 283 i~~v~Q~~~l~~-~ti~~ni~~g~~~--~----~~~~~~~~~~~~~~~~~i~~lp~g~~t~~g~~g~~LSgGqkqri~lA 355 (1082)
++|++|++.+|. .|++||+.++... . ..+++.++++..++.+.+.+ ...+||||||||++||
T Consensus 81 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrl~la 149 (214)
T TIGR02673 81 IGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRRVGAALRQVGLEHKADA-----------FPEQLSGGEQQRVAIA 149 (214)
T ss_pred eEEEecChhhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhC-----------ChhhCCHHHHHHHHHH
Confidence 999999999986 5999999875211 1 12344555555555443333 3358999999999999
Q ss_pred HhcccCCCeeEEeCcccCCCHHHHHHHHHHHHHHc-CCCeEEEEccCcccccc-CCEEEEEeCCE
Q 001411 356 RAVLRNPKILLLDEATSALDAESELIVQRALEKIM-SNRTTIVVAHRLSTVRD-VDTIMVLKNGQ 418 (1082)
Q Consensus 356 Ral~~~~~illlDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~vtH~~~~~~~-~d~i~~l~~G~ 418 (1082)
|||+.+|+++||||||++||+.+...+.+.|+++. +++|+|++||+++.+.. ||++++|++|+
T Consensus 150 ~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~ 214 (214)
T TIGR02673 150 RAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHDLSLVDRVAHRVIILDDGR 214 (214)
T ss_pred HHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEecCCC
Confidence 99999999999999999999999999999999875 47899999999999875 89999999885
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein. |
| >PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-40 Score=368.48 Aligned_cols=218 Identities=30% Similarity=0.507 Sum_probs=180.6
Q ss_pred EEEEEEEEECCCCC---CccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHHhCCCCCCcEEEECCeeCCCC----CHHH
Q 001411 206 IEFSEVCFAYPSRP---HMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSL----QLKW 278 (1082)
Q Consensus 206 i~~~~v~~~y~~~~---~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~----~~~~ 278 (1082)
++++|++++|++.. .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++... +...
T Consensus 3 l~~~~l~~~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (280)
T PRK13649 3 INLQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIKQ 82 (280)
T ss_pred EEEEEEEEEcCCCCccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccCHHH
Confidence 78999999997432 3599999999999999999999999999999999999999999999999998753 3456
Q ss_pred HhhhceEEccCC--CcChhcHHHHHhcCCCC--CCHHHHHHHHHHhchHHHHhcCCCCcc-ccccCCCCCCChHHHHHHH
Q 001411 279 LREQMGLVSQEP--ALFATSIANNILLGKED--ASMDRVIEAAKAANAHSFVEGLPDGYQ-TQVGEGGTQLSGGQKQRIA 353 (1082)
Q Consensus 279 ~~~~i~~v~Q~~--~l~~~ti~~ni~~g~~~--~~~~~~~~~~~~~~~~~~i~~lp~g~~-t~~g~~g~~LSgGqkqri~ 353 (1082)
+++.|+|++|++ .+|+.|++||+.++... .+.++..+.+ .+.++.+ |++ ........+||||||||++
T Consensus 83 ~~~~i~~~~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~-----~~~l~~~--~l~~~~~~~~~~~LSgG~~qrv~ 155 (280)
T PRK13649 83 IRKKVGLVFQFPESQLFEETVLKDVAFGPQNFGVSQEEAEALA-----REKLALV--GISESLFEKNPFELSGGQMRRVA 155 (280)
T ss_pred HHhheEEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHH-----HHHHHHc--CCChhhhhCCcccCCHHHHHHHH
Confidence 788899999998 67888999999875321 1222222111 1222222 333 2345566789999999999
Q ss_pred HHHhcccCCCeeEEeCcccCCCHHHHHHHHHHHHHHcC-CCeEEEEccCccccc-cCCEEEEEeCCEEEEecCchhhhh
Q 001411 354 IARAVLRNPKILLLDEATSALDAESELIVQRALEKIMS-NRTTIVVAHRLSTVR-DVDTIMVLKNGQVVESGTHVDLIS 430 (1082)
Q Consensus 354 lARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~-~~t~i~vtH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~ 430 (1082)
|||||+.+|++|||||||++||+.+.+.+.+.|.++.+ ++|+|++||+++.+. .||++++|++|++++.|+++++..
T Consensus 156 la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 234 (280)
T PRK13649 156 IAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLMDDVANYADFVYVLEKGKLVLSGKPKDIFQ 234 (280)
T ss_pred HHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 99999999999999999999999999999999998754 789999999999886 489999999999999999888765
|
|
| >PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-40 Score=358.79 Aligned_cols=218 Identities=26% Similarity=0.412 Sum_probs=179.6
Q ss_pred cEEEEEEEEECCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHHhCCCCCCcEEEECCeeCCCCCHHH-Hhhhc
Q 001411 205 QIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKW-LREQM 283 (1082)
Q Consensus 205 ~i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~-~~~~i 283 (1082)
.++++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+... +++.+
T Consensus 5 ~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i 82 (237)
T PRK11614 5 MLSFDKVSAHYGK--IQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMREAV 82 (237)
T ss_pred EEEEEeEEEeeCC--ceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEecCCCCHHHHHHhCE
Confidence 4899999999974 34999999999999999999999999999999999999999999999999988776543 57789
Q ss_pred eEEccCCCcChh-cHHHHHhcCCCCCCHHHHHHHHHHhchHHHHhcCCCCccccccCCCCCCChHHHHHHHHHHhcccCC
Q 001411 284 GLVSQEPALFAT-SIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNP 362 (1082)
Q Consensus 284 ~~v~Q~~~l~~~-ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~lp~g~~t~~g~~g~~LSgGqkqri~lARal~~~~ 362 (1082)
+|++|++.+|+. |++||+.++......++..+.+. +.++.++ ++..........||||||||++||||++.+|
T Consensus 83 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~-----~~l~~~~-~l~~~~~~~~~~LS~G~~qrl~la~al~~~p 156 (237)
T PRK11614 83 AIVPEGRRVFSRMTVEENLAMGGFFAERDQFQERIK-----WVYELFP-RLHERRIQRAGTMSGGEQQMLAIGRALMSQP 156 (237)
T ss_pred EEeccCcccCCCCcHHHHHHHhhhccChhHHHHHHH-----HHHHHHH-HHHHHHhCchhhCCHHHHHHHHHHHHHHhCC
Confidence 999999999985 99999988643222222111111 1111111 1111223455689999999999999999999
Q ss_pred CeeEEeCcccCCCHHHHHHHHHHHHHHc-CCCeEEEEccCccccc-cCCEEEEEeCCEEEEecCchhhhh
Q 001411 363 KILLLDEATSALDAESELIVQRALEKIM-SNRTTIVVAHRLSTVR-DVDTIMVLKNGQVVESGTHVDLIS 430 (1082)
Q Consensus 363 ~illlDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~vtH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~ 430 (1082)
+++||||||++||+.+.+.+.+.|+++. +++|+|++||+++.+. .||++++|++|++++.|+++++..
T Consensus 157 ~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 226 (237)
T PRK11614 157 RLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNANQALKLADRGYVLENGHVVLEDTGDALLA 226 (237)
T ss_pred CEEEEcCccccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHhhCCEEEEEeCCEEEeeCCHHHHhc
Confidence 9999999999999999999999998875 4789999999999765 589999999999999999998864
|
|
| >PRK13548 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-40 Score=362.41 Aligned_cols=212 Identities=28% Similarity=0.476 Sum_probs=181.6
Q ss_pred EEEEEEEEECCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHHhCCCCCCcEEEECCeeCCCCCHHHHhhhceE
Q 001411 206 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGL 285 (1082)
Q Consensus 206 i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 285 (1082)
++++|++++|++. .+|+|+||++++|++++|+|+||||||||+++|+|+++|++|+|.++|.++...+...+++.++|
T Consensus 3 l~~~~l~~~~~~~--~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (258)
T PRK13548 3 LEARNLSVRLGGR--TLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELARRRAV 80 (258)
T ss_pred EEEEeEEEEeCCe--eeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcccCCHHHhhhheEE
Confidence 7899999999753 49999999999999999999999999999999999999999999999999887777777888999
Q ss_pred EccCCCc-ChhcHHHHHhcCCCCC--C----HHHHHHHHHHhchHHHHhcCCCCccccccCCCCCCChHHHHHHHHHHhc
Q 001411 286 VSQEPAL-FATSIANNILLGKEDA--S----MDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAV 358 (1082)
Q Consensus 286 v~Q~~~l-~~~ti~~ni~~g~~~~--~----~~~~~~~~~~~~~~~~i~~lp~g~~t~~g~~g~~LSgGqkqri~lARal 358 (1082)
++|++.+ ++.|++||+.++.... . .+++.++++..++.+ ........||||||||++|||||
T Consensus 81 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LSgGe~qrv~la~al 149 (258)
T PRK13548 81 LPQHSSLSFPFTVEEVVAMGRAPHGLSRAEDDALVAAALAQVDLAH-----------LAGRDYPQLSGGEQQRVQLARVL 149 (258)
T ss_pred EccCCcCCCCCCHHHHHHhhhcccCCCcHHHHHHHHHHHHHcCCHh-----------HhcCCcccCCHHHHHHHHHHHHH
Confidence 9999987 5669999998764211 1 123344444444433 33445568999999999999999
Q ss_pred c------cCCCeeEEeCcccCCCHHHHHHHHHHHHHHc--CCCeEEEEccCccccc-cCCEEEEEeCCEEEEecCchhhh
Q 001411 359 L------RNPKILLLDEATSALDAESELIVQRALEKIM--SNRTTIVVAHRLSTVR-DVDTIMVLKNGQVVESGTHVDLI 429 (1082)
Q Consensus 359 ~------~~~~illlDEpts~LD~~~~~~i~~~l~~~~--~~~t~i~vtH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~ 429 (1082)
+ .+|+++||||||++||+.+...+.+.|+++. +++|+|++||+++.+. .||+|++|++|++++.|+++++.
T Consensus 150 ~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 229 (258)
T PRK13548 150 AQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLNLAARYADRIVLLHQGRLVADGTPAEVL 229 (258)
T ss_pred hcccccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhcCEEEEEECCEEEeeCCHHHHh
Confidence 9 5999999999999999999999999999875 4789999999999886 59999999999999999988876
Q ss_pred h
Q 001411 430 S 430 (1082)
Q Consensus 430 ~ 430 (1082)
.
T Consensus 230 ~ 230 (258)
T PRK13548 230 T 230 (258)
T ss_pred C
Confidence 5
|
|
| >PRK14248 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-40 Score=366.82 Aligned_cols=218 Identities=28% Similarity=0.471 Sum_probs=181.5
Q ss_pred cEEEEEEEEECCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHHhCCC-----CCCcEEEECCeeCCC--CCHH
Q 001411 205 QIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYE-----PTSGKILLDGHDLKS--LQLK 277 (1082)
Q Consensus 205 ~i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~-----~~~G~i~~~g~~~~~--~~~~ 277 (1082)
.++++|++++|++ ..+|+|+||++++||+++|+|+||||||||+++|+|+++ |++|+|.++|+++.. .+..
T Consensus 21 ~l~~~~l~~~~~~--~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 98 (268)
T PRK14248 21 ILEVKDLSIYYGE--KRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNINVV 98 (268)
T ss_pred eEEEEEEEEEeCC--ceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEcccccccHH
Confidence 5899999999974 349999999999999999999999999999999999864 799999999999864 3345
Q ss_pred HHhhhceEEccCCCcChhcHHHHHhcCCCCC---C----HHHHHHHHHHhchHHHHhcCCCCccccccCCCCCCChHHHH
Q 001411 278 WLREQMGLVSQEPALFATSIANNILLGKEDA---S----MDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQ 350 (1082)
Q Consensus 278 ~~~~~i~~v~Q~~~l~~~ti~~ni~~g~~~~---~----~~~~~~~~~~~~~~~~i~~lp~g~~t~~g~~g~~LSgGqkq 350 (1082)
.+++.++|++|++.+|+.|++||+.++.... . .+.+.++++..++. .+.....+..+.+|||||||
T Consensus 99 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-------~~~~~~~~~~~~~LSgGq~q 171 (268)
T PRK14248 99 NLRREIGMVFQKPNPFPKSIYNNITHALKYAGERRKSVLDEIVEESLTKAALW-------DEVKDRLHSSALSLSGGQQQ 171 (268)
T ss_pred HHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCC-------cchHHHHhcCcccCCHHHHH
Confidence 6788899999999999999999998753211 1 11223333333221 11123345667799999999
Q ss_pred HHHHHHhcccCCCeeEEeCcccCCCHHHHHHHHHHHHHHcCCCeEEEEccCccccc-cCCEEEEEeCCEEEEecCchhhh
Q 001411 351 RIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVR-DVDTIMVLKNGQVVESGTHVDLI 429 (1082)
Q Consensus 351 ri~lARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~vtH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~ 429 (1082)
|++|||||+.+|+++||||||++||+.+...+.+.|+++.+++|+|++||+++.+. .||+|++|++|++++.|+++++.
T Consensus 172 rl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 251 (268)
T PRK14248 172 RLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKEEYSIIIVTHNMQQALRVSDRTAFFLNGDLVEYDQTEQIF 251 (268)
T ss_pred HHHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhcCCEEEEEEeCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 99999999999999999999999999999999999999876789999999999875 58999999999999999988876
Q ss_pred hc
Q 001411 430 SK 431 (1082)
Q Consensus 430 ~~ 431 (1082)
.+
T Consensus 252 ~~ 253 (268)
T PRK14248 252 TS 253 (268)
T ss_pred hC
Confidence 54
|
|
| >TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-40 Score=364.14 Aligned_cols=217 Identities=33% Similarity=0.534 Sum_probs=179.9
Q ss_pred EEEEEEEEECCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHHhCCCCCCcEEEECCeeCCCCC----------
Q 001411 206 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQ---------- 275 (1082)
Q Consensus 206 i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~---------- 275 (1082)
|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++..++
T Consensus 1 i~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~ 78 (252)
T TIGR03005 1 VRFSDVTKRFGI--LTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPLVPAD 78 (252)
T ss_pred CEEEEEEEEeCC--eeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccccccc
Confidence 478999999975 34999999999999999999999999999999999999999999999999886542
Q ss_pred ---HHHHhhhceEEccCCCcCh-hcHHHHHhcCCC---CCCHHHHHHHHHHhchHHHHhcCCCCccccccCCCCCCChHH
Q 001411 276 ---LKWLREQMGLVSQEPALFA-TSIANNILLGKE---DASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQ 348 (1082)
Q Consensus 276 ---~~~~~~~i~~v~Q~~~l~~-~ti~~ni~~g~~---~~~~~~~~~~~~~~~~~~~i~~lp~g~~t~~g~~g~~LSgGq 348 (1082)
...+++.++|++|++.+|+ .|+.||+.++.. ....++..+ .+.+.++.+ |++.........|||||
T Consensus 79 ~~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~-----~~~~~l~~~--gl~~~~~~~~~~LS~G~ 151 (252)
T TIGR03005 79 EKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEK-----RAMELLDMV--GLADKADHMPAQLSGGQ 151 (252)
T ss_pred hhHHHHHhhCeEEEecCcccCCCCcHHHHHHHHHHHhcCCCHHHHHH-----HHHHHHHHc--CChhHhhcChhhcCHHH
Confidence 2456788999999999886 699999987521 111111111 112233333 44444555667899999
Q ss_pred HHHHHHHHhcccCCCeeEEeCcccCCCHHHHHHHHHHHHHHcC--CCeEEEEccCccccc-cCCEEEEEeCCEEEEecCc
Q 001411 349 KQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMS--NRTTIVVAHRLSTVR-DVDTIMVLKNGQVVESGTH 425 (1082)
Q Consensus 349 kqri~lARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~vtH~~~~~~-~~d~i~~l~~G~i~~~g~~ 425 (1082)
|||++|||||+.+|+++||||||++||+.+...+.+.|+++.+ ++|+|++||+++.+. .||++++|++|++++.|++
T Consensus 152 ~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~~ 231 (252)
T TIGR03005 152 QQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMGFAREFADRVCFFDKGRIVEQGKP 231 (252)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCH
Confidence 9999999999999999999999999999999999999998753 789999999999985 5899999999999999999
Q ss_pred hhhhhc
Q 001411 426 VDLISK 431 (1082)
Q Consensus 426 ~~l~~~ 431 (1082)
+++.+.
T Consensus 232 ~~~~~~ 237 (252)
T TIGR03005 232 DEIFRQ 237 (252)
T ss_pred HHHhcC
Confidence 888654
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. |
| >PRK10070 glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-40 Score=381.02 Aligned_cols=199 Identities=33% Similarity=0.553 Sum_probs=170.8
Q ss_pred cccceeEEEeCCCEEEEEcCCCCcHHHHHHHHHhCCCCCCcEEEECCeeCCCCCHHHH----hhhceEEccCCCcChh-c
Q 001411 222 VFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWL----REQMGLVSQEPALFAT-S 296 (1082)
Q Consensus 222 ~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~----~~~i~~v~Q~~~l~~~-t 296 (1082)
+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+ +++++||+|++.+|+. |
T Consensus 43 ~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~~T 122 (400)
T PRK10070 43 GVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHMT 122 (400)
T ss_pred EEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCCCC
Confidence 7999999999999999999999999999999999999999999999999988776543 3579999999999975 9
Q ss_pred HHHHHhcCCCC--CC----HHHHHHHHHHhchHHHHhcCCCCccccccCCCCCCChHHHHHHHHHHhcccCCCeeEEeCc
Q 001411 297 IANNILLGKED--AS----MDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEA 370 (1082)
Q Consensus 297 i~~ni~~g~~~--~~----~~~~~~~~~~~~~~~~i~~lp~g~~t~~g~~g~~LSgGqkqri~lARal~~~~~illlDEp 370 (1082)
++||+.++... .. .+++.++++..++.+. ......+||||||||++|||||+.+|++||||||
T Consensus 123 v~enl~~~~~~~~~~~~~~~~~~~e~L~~~gL~~~-----------~~~~~~~LSgGq~QRv~LArAL~~~P~iLLLDEP 191 (400)
T PRK10070 123 VLDNTAFGMELAGINAEERREKALDALRQVGLENY-----------AHSYPDELSGGMRQRVGLARALAINPDILLMDEA 191 (400)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChh-----------hhcCcccCCHHHHHHHHHHHHHhcCCCEEEEECC
Confidence 99999986321 11 2234444555544333 3344468999999999999999999999999999
Q ss_pred ccCCCHHHHHHHHHHHHHHc--CCCeEEEEccCccccc-cCCEEEEEeCCEEEEecCchhhhhc
Q 001411 371 TSALDAESELIVQRALEKIM--SNRTTIVVAHRLSTVR-DVDTIMVLKNGQVVESGTHVDLISK 431 (1082)
Q Consensus 371 ts~LD~~~~~~i~~~l~~~~--~~~t~i~vtH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~~ 431 (1082)
|++||+.+.+.+++.|.++. .++|+|+|||+++.+. .||+|++|++|++++.|+++++...
T Consensus 192 ts~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~~~~~~~~Dri~vL~~G~i~~~g~~~~l~~~ 255 (400)
T PRK10070 192 FSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLDEAMRIGDRIAIMQNGEVVQVGTPDEILNN 255 (400)
T ss_pred CccCCHHHHHHHHHHHHHHHHHCCCeEEEEECCHHHHHHhCCEEEEEECCEEEecCCHHHHHhC
Confidence 99999999999999999874 4789999999999875 5899999999999999999998765
|
|
| >PRK14236 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-40 Score=366.50 Aligned_cols=219 Identities=30% Similarity=0.488 Sum_probs=184.6
Q ss_pred CcEEEEEEEEECCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHHhCCCC-----CCcEEEECCeeCCC--CCH
Q 001411 204 GQIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEP-----TSGKILLDGHDLKS--LQL 276 (1082)
Q Consensus 204 ~~i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~-----~~G~i~~~g~~~~~--~~~ 276 (1082)
+.++++|++++|+++ ++|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.++|.++.. .+.
T Consensus 24 ~~l~~~nl~~~~~~~--~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~~~~ 101 (272)
T PRK14236 24 TALEVRNLNLFYGDK--QALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKVDV 101 (272)
T ss_pred cEEEEEEEEEEECCe--eEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECcccccCH
Confidence 469999999999743 499999999999999999999999999999999999884 89999999999864 345
Q ss_pred HHHhhhceEEccCCCcChhcHHHHHhcCCCCC---C----HHHHHHHHHHhchHHHHhcCCCCccccccCCCCCCChHHH
Q 001411 277 KWLREQMGLVSQEPALFATSIANNILLGKEDA---S----MDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQK 349 (1082)
Q Consensus 277 ~~~~~~i~~v~Q~~~l~~~ti~~ni~~g~~~~---~----~~~~~~~~~~~~~~~~i~~lp~g~~t~~g~~g~~LSgGqk 349 (1082)
..+++.++|++|++.+|+.|++||+.++.... . .+++.++++..++.+. ..+..+..+.+||||||
T Consensus 102 ~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-------~~~~~~~~~~~LS~Gq~ 174 (272)
T PRK14236 102 AELRRRVGMVFQRPNPFPKSIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDE-------VKDRLHENAFGLSGGQQ 174 (272)
T ss_pred HHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCChh-------HHHHhhCCcccCCHHHH
Confidence 56788999999999999899999998753211 1 1223344444433222 22345667789999999
Q ss_pred HHHHHHHhcccCCCeeEEeCcccCCCHHHHHHHHHHHHHHcCCCeEEEEccCccccc-cCCEEEEEeCCEEEEecCchhh
Q 001411 350 QRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVR-DVDTIMVLKNGQVVESGTHVDL 428 (1082)
Q Consensus 350 qri~lARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~vtH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l 428 (1082)
||++|||||+++|+++||||||++||+.+...+.+.|.++.+++|+|++||+++.+. .||+|++|++|++++.|+++++
T Consensus 175 qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 254 (272)
T PRK14236 175 QRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKSKYTIVIVTHNMQQAARVSDYTAFMYMGKLVEYGDTDTL 254 (272)
T ss_pred HHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEeCCHHHHHhhCCEEEEEECCEEEecCCHHHH
Confidence 999999999999999999999999999999999999999877789999999999875 5899999999999999998887
Q ss_pred hhc
Q 001411 429 ISK 431 (1082)
Q Consensus 429 ~~~ 431 (1082)
...
T Consensus 255 ~~~ 257 (272)
T PRK14236 255 FTS 257 (272)
T ss_pred hcC
Confidence 643
|
|
| >PRK11124 artP arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-40 Score=360.50 Aligned_cols=217 Identities=27% Similarity=0.501 Sum_probs=179.1
Q ss_pred cEEEEEEEEECCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHHhCCCCCCcEEEECCeeCC------CCCHHH
Q 001411 205 QIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLK------SLQLKW 278 (1082)
Q Consensus 205 ~i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~------~~~~~~ 278 (1082)
.++++|+++.|++. .+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++. ..+...
T Consensus 2 ~l~~~~l~~~~~~~--~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (242)
T PRK11124 2 SIQLNGINCFYGAH--QALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRE 79 (242)
T ss_pred EEEEEeeEEEECCe--eeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccccccchhhHHH
Confidence 37899999999753 4999999999999999999999999999999999999999999999999873 123456
Q ss_pred HhhhceEEccCCCcChh-cHHHHHhcCCC---CCCHHHHHHHHHHhchHHHHhcCCCCccccccCCCCCCChHHHHHHHH
Q 001411 279 LREQMGLVSQEPALFAT-SIANNILLGKE---DASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAI 354 (1082)
Q Consensus 279 ~~~~i~~v~Q~~~l~~~-ti~~ni~~g~~---~~~~~~~~~~~~~~~~~~~i~~lp~g~~t~~g~~g~~LSgGqkqri~l 354 (1082)
+++.|+|++|++.+|+. |++||+.++.. ....++..+ .+.+.++.+ |++..+.....+||||||||++|
T Consensus 80 ~~~~i~~~~q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~-----~~~~~l~~~--gl~~~~~~~~~~LS~G~~qrv~l 152 (242)
T PRK11124 80 LRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQALA-----RAEKLLERL--RLKPYADRFPLHLSGGQQQRVAI 152 (242)
T ss_pred HHhheEEEecCccccCCCcHHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHHc--CChhhhhCChhhCCHHHHHHHHH
Confidence 77889999999999876 99999974311 111111111 112333333 45445555667899999999999
Q ss_pred HHhcccCCCeeEEeCcccCCCHHHHHHHHHHHHHHc-CCCeEEEEccCcccccc-CCEEEEEeCCEEEEecCchhhhh
Q 001411 355 ARAVLRNPKILLLDEATSALDAESELIVQRALEKIM-SNRTTIVVAHRLSTVRD-VDTIMVLKNGQVVESGTHVDLIS 430 (1082)
Q Consensus 355 ARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~ 430 (1082)
|||++.+|+++||||||++||+.+...+.+.|+++. +++|+|++||+++.+.. ||++++|++|++++.|+++++.+
T Consensus 153 aral~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~g~i~~~~~~~~~~~ 230 (242)
T PRK11124 153 ARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDASCFTQ 230 (242)
T ss_pred HHHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHhcC
Confidence 999999999999999999999999999999999875 47899999999999864 89999999999999999887643
|
|
| >TIGR02769 nickel_nikE nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-40 Score=364.91 Aligned_cols=217 Identities=30% Similarity=0.452 Sum_probs=180.2
Q ss_pred EEEEEEEEECCCC-------CCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHHhCCCCCCcEEEECCeeCCCCCHH-
Q 001411 206 IEFSEVCFAYPSR-------PHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLK- 277 (1082)
Q Consensus 206 i~~~~v~~~y~~~-------~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~- 277 (1082)
++++|++|+|++. ...+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+..
T Consensus 3 l~~~~l~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~ 82 (265)
T TIGR02769 3 LEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRKQ 82 (265)
T ss_pred EEEEeEEEEeccCccccccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEccccCHHH
Confidence 7899999999631 24599999999999999999999999999999999999999999999999998876654
Q ss_pred --HHhhhceEEccCCC--cCh-hcHHHHHhcCCC---CCC----HHHHHHHHHHhchHHHHhcCCCCcc-ccccCCCCCC
Q 001411 278 --WLREQMGLVSQEPA--LFA-TSIANNILLGKE---DAS----MDRVIEAAKAANAHSFVEGLPDGYQ-TQVGEGGTQL 344 (1082)
Q Consensus 278 --~~~~~i~~v~Q~~~--l~~-~ti~~ni~~g~~---~~~----~~~~~~~~~~~~~~~~i~~lp~g~~-t~~g~~g~~L 344 (1082)
.+++.|+|++|++. +++ .|++||+.++.. ... .+++.++ ++.+ |++ ......+..|
T Consensus 83 ~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~---------l~~~--gl~~~~~~~~~~~L 151 (265)
T TIGR02769 83 RRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESEQKARIAEL---------LDMV--GLRSEDADKLPRQL 151 (265)
T ss_pred HHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHH---------HHHc--CCChhhhhCChhhC
Confidence 35778999999983 443 599999965321 111 1222233 3333 443 2345667789
Q ss_pred ChHHHHHHHHHHhcccCCCeeEEeCcccCCCHHHHHHHHHHHHHHcC--CCeEEEEccCccccc-cCCEEEEEeCCEEEE
Q 001411 345 SGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMS--NRTTIVVAHRLSTVR-DVDTIMVLKNGQVVE 421 (1082)
Q Consensus 345 SgGqkqri~lARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~vtH~~~~~~-~~d~i~~l~~G~i~~ 421 (1082)
|||||||++|||||+.+|++|||||||++||+.+++.+.+.|+++.+ ++|+|++||+++.+. .||++++|++|++++
T Consensus 152 SgGe~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~~ 231 (265)
T TIGR02769 152 SGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLRLVQSFCQRVAVMDKGQIVE 231 (265)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHHhcEEEEEeCCEEEE
Confidence 99999999999999999999999999999999999999999998753 789999999999987 489999999999999
Q ss_pred ecCchhhhhcCc
Q 001411 422 SGTHVDLISKGG 433 (1082)
Q Consensus 422 ~g~~~~l~~~~~ 433 (1082)
.|+++++.....
T Consensus 232 ~g~~~~~~~~~~ 243 (265)
T TIGR02769 232 ECDVAQLLSFKH 243 (265)
T ss_pred ECCHHHHcCCCC
Confidence 999999986433
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. |
| >PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-40 Score=370.05 Aligned_cols=221 Identities=27% Similarity=0.491 Sum_probs=180.1
Q ss_pred CcEEEEEEEEECCCCC---CccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHHhCCCCCCcEEEECCeeCCC----C-C
Q 001411 204 GQIEFSEVCFAYPSRP---HMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKS----L-Q 275 (1082)
Q Consensus 204 ~~i~~~~v~~~y~~~~---~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~----~-~ 275 (1082)
+.|+++|++++|+++. .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. . +
T Consensus 5 ~~l~i~nl~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~ 84 (289)
T PRK13645 5 KDIILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIKE 84 (289)
T ss_pred ceEEEEEEEEEeCCCCccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccccccccc
Confidence 5699999999997542 249999999999999999999999999999999999999999999999998752 2 3
Q ss_pred HHHHhhhceEEccCC--CcChhcHHHHHhcCCCC--CCHHHHHHHHHHhchHHHHhcCCCCccccccCCCCCCChHHHHH
Q 001411 276 LKWLREQMGLVSQEP--ALFATSIANNILLGKED--ASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQR 351 (1082)
Q Consensus 276 ~~~~~~~i~~v~Q~~--~l~~~ti~~ni~~g~~~--~~~~~~~~~~~~~~~~~~i~~lp~g~~t~~g~~g~~LSgGqkqr 351 (1082)
...+|+.|+|++|++ .+|+.|++||+.++... ...++..+.+ ..+.+.+ .+|.+ ........||||||||
T Consensus 85 ~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~--~~ll~~~-~L~~~---~~~~~~~~LS~Gq~qr 158 (289)
T PRK13645 85 VKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNLGENKQEAYKKV--PELLKLV-QLPED---YVKRSPFELSGGQKRR 158 (289)
T ss_pred HHHHhccEEEEEeCcchhhhhhHHHHHHHHHHHHcCCCHHHHHHHH--HHHHHHc-CCChh---HhcCChhhCCHHHHHH
Confidence 456788899999998 46778999999876421 1222221111 1111111 23222 3445667899999999
Q ss_pred HHHHHhcccCCCeeEEeCcccCCCHHHHHHHHHHHHHHcC--CCeEEEEccCccccc-cCCEEEEEeCCEEEEecCchhh
Q 001411 352 IAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMS--NRTTIVVAHRLSTVR-DVDTIMVLKNGQVVESGTHVDL 428 (1082)
Q Consensus 352 i~lARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~vtH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l 428 (1082)
++|||||+.+|++|||||||++||+.+.+.+.+.|.++.+ ++|+|+|||+++.+. .||+|++|++|++++.|+++++
T Consensus 159 v~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 238 (289)
T PRK13645 159 VALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVISIGSPFEI 238 (289)
T ss_pred HHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999988743 789999999999875 5899999999999999998887
Q ss_pred hh
Q 001411 429 IS 430 (1082)
Q Consensus 429 ~~ 430 (1082)
..
T Consensus 239 ~~ 240 (289)
T PRK13645 239 FS 240 (289)
T ss_pred hc
Confidence 54
|
|
| >PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-40 Score=356.53 Aligned_cols=209 Identities=29% Similarity=0.495 Sum_probs=178.7
Q ss_pred cEEEEEEEEECCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHHhCCCCCCcEEEECCeeCCCCCHHHHhhhce
Q 001411 205 QIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMG 284 (1082)
Q Consensus 205 ~i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 284 (1082)
.|+++|+++.|++. ++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.++
T Consensus 7 ~i~~~~l~~~~~~~--~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 84 (225)
T PRK10247 7 LLQLQNVGYLAGDA--KILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYRQQVS 84 (225)
T ss_pred eEEEeccEEeeCCc--eeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcCcCCHHHHHhccE
Confidence 58999999999743 4999999999999999999999999999999999999999999999999998888777888999
Q ss_pred EEccCCCcChhcHHHHHhcCCC---CC-CHHHHHHHHHHhchHHHHhcCCCCcc-ccccCCCCCCChHHHHHHHHHHhcc
Q 001411 285 LVSQEPALFATSIANNILLGKE---DA-SMDRVIEAAKAANAHSFVEGLPDGYQ-TQVGEGGTQLSGGQKQRIAIARAVL 359 (1082)
Q Consensus 285 ~v~Q~~~l~~~ti~~ni~~g~~---~~-~~~~~~~~~~~~~~~~~i~~lp~g~~-t~~g~~g~~LSgGqkqri~lARal~ 359 (1082)
|++|++.+|+.|++||+.++.. .. ..+++. +.++.+ |+. +.......+||||||||++|||||+
T Consensus 85 ~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~---------~~l~~~--~l~~~~~~~~~~~LS~G~~qrv~laral~ 153 (225)
T PRK10247 85 YCAQTPTLFGDTVYDNLIFPWQIRNQQPDPAIFL---------DDLERF--ALPDTILTKNIAELSGGEKQRISLIRNLQ 153 (225)
T ss_pred EEecccccccccHHHHHHhHHhhcCCChHHHHHH---------HHHHHc--CCChHHhcCCcccCCHHHHHHHHHHHHHh
Confidence 9999999999999999986421 11 111222 233333 342 3456677899999999999999999
Q ss_pred cCCCeeEEeCcccCCCHHHHHHHHHHHHHHc--CCCeEEEEccCccccccCCEEEEEe-CCEEEEecCch
Q 001411 360 RNPKILLLDEATSALDAESELIVQRALEKIM--SNRTTIVVAHRLSTVRDVDTIMVLK-NGQVVESGTHV 426 (1082)
Q Consensus 360 ~~~~illlDEpts~LD~~~~~~i~~~l~~~~--~~~t~i~vtH~~~~~~~~d~i~~l~-~G~i~~~g~~~ 426 (1082)
++|+++||||||++||+.+.+.+.+.|.++. .++|+|++||+++.++.||++++|+ ++..+++|+|+
T Consensus 154 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~~~~~~d~i~~l~~~~~~~~~~~~~ 223 (225)
T PRK10247 154 FMPKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKDEINHADKVITLQPHAGEMQEARYE 223 (225)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChHHHHhCCEEEEEecccchHhhhhhc
Confidence 9999999999999999999999999999874 3789999999999998899999995 66777888775
|
|
| >PRK14245 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-40 Score=364.02 Aligned_cols=218 Identities=31% Similarity=0.496 Sum_probs=181.8
Q ss_pred cEEEEEEEEECCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHHhC---CCC--CCcEEEECCeeCCCC--CHH
Q 001411 205 QIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRL---YEP--TSGKILLDGHDLKSL--QLK 277 (1082)
Q Consensus 205 ~i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~---~~~--~~G~i~~~g~~~~~~--~~~ 277 (1082)
.++++|+++.|++ ..+|+|+||++++||+++|+||||||||||+++|+|+ ++| ++|+|.++|+++... +..
T Consensus 3 ~l~~~~~~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 80 (250)
T PRK14245 3 KIDARDVNFWYGD--FHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQVD 80 (250)
T ss_pred EEEEEEEEEEECC--EeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecccccccHH
Confidence 4889999999975 3499999999999999999999999999999999997 454 589999999998653 345
Q ss_pred HHhhhceEEccCCCcChhcHHHHHhcCCCCC---CH----HHHHHHHHHhchHHHHhcCCCCccccccCCCCCCChHHHH
Q 001411 278 WLREQMGLVSQEPALFATSIANNILLGKEDA---SM----DRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQ 350 (1082)
Q Consensus 278 ~~~~~i~~v~Q~~~l~~~ti~~ni~~g~~~~---~~----~~~~~~~~~~~~~~~i~~lp~g~~t~~g~~g~~LSgGqkq 350 (1082)
.+++.++|++|++.+|+.|++||+.++.... .. +++.++++..++ ++...+.....+.+|||||||
T Consensus 81 ~~~~~i~~v~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l-------~~~~~~~~~~~~~~LS~G~~q 153 (250)
T PRK14245 81 ELRKNVGMVFQRPNPFPKSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAAL-------WDEVKDKLKESAFALSGGQQQ 153 (250)
T ss_pred HHhhheEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCC-------CcchhhhhhCCcccCCHHHHH
Confidence 6788899999999999889999998753211 11 122333333332 222223456677899999999
Q ss_pred HHHHHHhcccCCCeeEEeCcccCCCHHHHHHHHHHHHHHcCCCeEEEEccCccccc-cCCEEEEEeCCEEEEecCchhhh
Q 001411 351 RIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVR-DVDTIMVLKNGQVVESGTHVDLI 429 (1082)
Q Consensus 351 ri~lARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~vtH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~ 429 (1082)
|++|||||+.+|+++||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+. .||++++|++|++++.|+++++.
T Consensus 154 rv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~v~~l~~G~~~~~~~~~~~~ 233 (250)
T PRK14245 154 RLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHELKKDYTIVIVTHNMQQAARVSDKTAFFYMGEMVEYDDTKKIF 233 (250)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECCEEEEECCHHHHh
Confidence 99999999999999999999999999999999999999877899999999999885 58999999999999999999886
Q ss_pred hc
Q 001411 430 SK 431 (1082)
Q Consensus 430 ~~ 431 (1082)
++
T Consensus 234 ~~ 235 (250)
T PRK14245 234 TN 235 (250)
T ss_pred cC
Confidence 54
|
|
| >cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-40 Score=355.26 Aligned_cols=202 Identities=33% Similarity=0.526 Sum_probs=169.9
Q ss_pred EEEEEEEEECCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHHhCCCCCCcEEEECCeeCCCCCH---HHHhhh
Q 001411 206 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQL---KWLREQ 282 (1082)
Q Consensus 206 i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~---~~~~~~ 282 (1082)
++++|++++|++. ..+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. ..+++.
T Consensus 1 l~~~~l~~~~~~~-~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~ 79 (214)
T cd03292 1 IEFINVTKTYPNG-TAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLRRK 79 (214)
T ss_pred CEEEEEEEEeCCC-ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHHHh
Confidence 4689999999743 359999999999999999999999999999999999999999999999999877654 346778
Q ss_pred ceEEccCCCcChh-cHHHHHhcCCCC--CCH----HHHHHHHHHhchHHHHhcCCCCccccccCCCCCCChHHHHHHHHH
Q 001411 283 MGLVSQEPALFAT-SIANNILLGKED--ASM----DRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIA 355 (1082)
Q Consensus 283 i~~v~Q~~~l~~~-ti~~ni~~g~~~--~~~----~~~~~~~~~~~~~~~i~~lp~g~~t~~g~~g~~LSgGqkqri~lA 355 (1082)
++|++|++.+|+. |++||+.++... ... +++.++++..++.+. ......+||||||||++||
T Consensus 80 i~~v~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~G~~qrv~la 148 (214)
T cd03292 80 IGVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRVPAALELVGLSHK-----------HRALPAELSGGEQQRVAIA 148 (214)
T ss_pred eEEEecCchhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHH-----------hhCChhhcCHHHHHHHHHH
Confidence 9999999999885 999999875321 111 233444444444333 3334458999999999999
Q ss_pred HhcccCCCeeEEeCcccCCCHHHHHHHHHHHHHHc-CCCeEEEEccCcccccc-CCEEEEEeCCEE
Q 001411 356 RAVLRNPKILLLDEATSALDAESELIVQRALEKIM-SNRTTIVVAHRLSTVRD-VDTIMVLKNGQV 419 (1082)
Q Consensus 356 Ral~~~~~illlDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~vtH~~~~~~~-~d~i~~l~~G~i 419 (1082)
|||+.+|+++||||||++||+++.+.+.+.|+++. +++|+|++||+++.+.. ||++++|++|++
T Consensus 149 ral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~~ 214 (214)
T cd03292 149 RAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHAKELVDTTRHRVIALERGKL 214 (214)
T ss_pred HHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 99999999999999999999999999999999874 47899999999999875 899999999974
|
The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. |
| >PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-40 Score=361.69 Aligned_cols=218 Identities=30% Similarity=0.531 Sum_probs=181.1
Q ss_pred cEEEEEEEEECCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHHhCCCCCCcEEEECCeeCCCCC--------H
Q 001411 205 QIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQ--------L 276 (1082)
Q Consensus 205 ~i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~--------~ 276 (1082)
.++++|++++|+++ ++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+ .
T Consensus 3 ~l~~~~l~~~~~~~--~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 80 (250)
T PRK11264 3 AIEVKNLVKKFHGQ--TVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQKGLI 80 (250)
T ss_pred cEEEeceEEEECCe--eeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccccccchhhHH
Confidence 38899999999753 4999999999999999999999999999999999999999999999999986432 3
Q ss_pred HHHhhhceEEccCCCcCh-hcHHHHHhcCCC---CCCHHHHHHHHHHhchHHHHhcCCCCccccccCCCCCCChHHHHHH
Q 001411 277 KWLREQMGLVSQEPALFA-TSIANNILLGKE---DASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRI 352 (1082)
Q Consensus 277 ~~~~~~i~~v~Q~~~l~~-~ti~~ni~~g~~---~~~~~~~~~~~~~~~~~~~i~~lp~g~~t~~g~~g~~LSgGqkqri 352 (1082)
..+++.++|++|++.+|+ .|++||+.++.. ....++..+. +.+.++.+ |++........+||||||||+
T Consensus 81 ~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~-----~~~~l~~~--gl~~~~~~~~~~LS~Gq~qrv 153 (250)
T PRK11264 81 RQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATAR-----ARELLAKV--GLAGKETSYPRRLSGGQQQRV 153 (250)
T ss_pred HHhhhhEEEEecCcccCCCCCHHHHHHHHHHHhcCCCHHHHHHH-----HHHHHHHc--CCcchhhCChhhCChHHHHHH
Confidence 456788999999999886 599999986421 1111111111 12233333 444445566789999999999
Q ss_pred HHHHhcccCCCeeEEeCcccCCCHHHHHHHHHHHHHHcC-CCeEEEEccCcccccc-CCEEEEEeCCEEEEecCchhhhh
Q 001411 353 AIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMS-NRTTIVVAHRLSTVRD-VDTIMVLKNGQVVESGTHVDLIS 430 (1082)
Q Consensus 353 ~lARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~-~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~ 430 (1082)
+|||||+.+|++|||||||++||+.+.+.+.+.|.++.+ ++|+|++||+++.+.. ||++++|++|++++.|+++++.+
T Consensus 154 ~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 233 (250)
T PRK11264 154 AIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMSFARDVADRAIFMDQGRIVEQGPAKALFA 233 (250)
T ss_pred HHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHHhc
Confidence 999999999999999999999999999999999988754 7899999999999865 89999999999999999988764
Q ss_pred c
Q 001411 431 K 431 (1082)
Q Consensus 431 ~ 431 (1082)
.
T Consensus 234 ~ 234 (250)
T PRK11264 234 D 234 (250)
T ss_pred C
Confidence 3
|
|
| >TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-40 Score=372.88 Aligned_cols=217 Identities=28% Similarity=0.486 Sum_probs=178.0
Q ss_pred cEEEEEEEEECCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHHhCCCCCCcEEEECCeeCCCCCHHHHhhhce
Q 001411 205 QIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMG 284 (1082)
Q Consensus 205 ~i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 284 (1082)
.|+++|++++|++ ..+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++... ...+|+.++
T Consensus 4 ~i~~~~l~~~~~~--~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~-~~~~~~~i~ 80 (303)
T TIGR01288 4 AIDLVGVSKSYGD--KVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSR-ARLARVAIG 80 (303)
T ss_pred EEEEEeEEEEeCC--eEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccc-HHHHhhcEE
Confidence 4899999999974 3499999999999999999999999999999999999999999999999988653 355688899
Q ss_pred EEccCCCcCh-hcHHHHHhcCCC--CCCHHHHHHHHHHhchHHHHhcCCCCccccccCCCCCCChHHHHHHHHHHhcccC
Q 001411 285 LVSQEPALFA-TSIANNILLGKE--DASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRN 361 (1082)
Q Consensus 285 ~v~Q~~~l~~-~ti~~ni~~g~~--~~~~~~~~~~~~~~~~~~~i~~lp~g~~t~~g~~g~~LSgGqkqri~lARal~~~ 361 (1082)
|++|++.+++ .|++||+.+... ..+..+..+.+. +.++.+ |+.........+||||||||++|||||+.+
T Consensus 81 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~-----~ll~~~--~l~~~~~~~~~~LSgG~~qrv~la~al~~~ 153 (303)
T TIGR01288 81 VVPQFDNLDPEFTVRENLLVFGRYFGMSTREIEAVIP-----SLLEFA--RLESKADVRVALLSGGMKRRLTLARALIND 153 (303)
T ss_pred EEeccccCCcCCcHHHHHHHHHHHcCCCHHHHHHHHH-----HHHHHC--CChhHhcCchhhCCHHHHHHHHHHHHHhcC
Confidence 9999999886 499999975211 112222222111 111111 222223344468999999999999999999
Q ss_pred CCeeEEeCcccCCCHHHHHHHHHHHHHHc-CCCeEEEEccCcccccc-CCEEEEEeCCEEEEecCchhhhhc
Q 001411 362 PKILLLDEATSALDAESELIVQRALEKIM-SNRTTIVVAHRLSTVRD-VDTIMVLKNGQVVESGTHVDLISK 431 (1082)
Q Consensus 362 ~~illlDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 431 (1082)
|+++||||||++||+.+...+.+.|+++. +++|+|++||+++.+.. ||+|++|++|+++..|+++++...
T Consensus 154 p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~til~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 225 (303)
T TIGR01288 154 PQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLESGRKIAEGRPHALIDE 225 (303)
T ss_pred CCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhh
Confidence 99999999999999999999999999874 47899999999999864 999999999999999999888643
|
This model does not recognize the highly divergent NodI from Azorhizobium caulinodans. |
| >PRK14249 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-40 Score=362.18 Aligned_cols=218 Identities=31% Similarity=0.518 Sum_probs=183.3
Q ss_pred cEEEEEEEEECCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHHhCCCCC-----CcEEEECCeeCCCC--CHH
Q 001411 205 QIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPT-----SGKILLDGHDLKSL--QLK 277 (1082)
Q Consensus 205 ~i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~-----~G~i~~~g~~~~~~--~~~ 277 (1082)
.++++|++|+|++ ..+|+|+||+|++|++++|+||||||||||+++|+|+++|+ +|+|.++|.++... +..
T Consensus 4 ~l~~~~l~~~~~~--~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~ 81 (251)
T PRK14249 4 KIKIRGVNFFYHK--HQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLDVV 81 (251)
T ss_pred eEEEEEEEEEECC--eeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccccccChH
Confidence 5899999999974 34999999999999999999999999999999999999997 69999999988643 445
Q ss_pred HHhhhceEEccCCCcChhcHHHHHhcCCCC--C-CH----HHHHHHHHHhchHHHHhcCCCCccccccCCCCCCChHHHH
Q 001411 278 WLREQMGLVSQEPALFATSIANNILLGKED--A-SM----DRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQ 350 (1082)
Q Consensus 278 ~~~~~i~~v~Q~~~l~~~ti~~ni~~g~~~--~-~~----~~~~~~~~~~~~~~~i~~lp~g~~t~~g~~g~~LSgGqkq 350 (1082)
.+++.++|++|++.+|+.|++||+.++... . .. +.+.++++..++.+ +........+.+|||||||
T Consensus 82 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~l~~~~~~~~~~LS~Gq~q 154 (251)
T PRK14249 82 NLRKRVGMVFQQPNPFPKSIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWD-------EVKDNLHKSGLALSGGQQQ 154 (251)
T ss_pred HhhceEEEEecCCccCcCcHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCCch-------hhhhHhhCCcccCCHHHHH
Confidence 678899999999999999999999876321 1 11 12222333333222 2233456777899999999
Q ss_pred HHHHHHhcccCCCeeEEeCcccCCCHHHHHHHHHHHHHHcCCCeEEEEccCcccccc-CCEEEEEeCCEEEEecCchhhh
Q 001411 351 RIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRD-VDTIMVLKNGQVVESGTHVDLI 429 (1082)
Q Consensus 351 ri~lARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~ 429 (1082)
|++|||||+.+|+++||||||++||+.+...+.+.|+++.+++|+|++||+++.+.. ||++++|++|++++.|+++++.
T Consensus 155 rv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tilivsh~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 234 (251)
T PRK14249 155 RLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELKQNYTIAIVTHNMQQAARASDWTGFLLTGDLVEYGRTGEIF 234 (251)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhCCEEEEEeCCeEEEeCCHHHHH
Confidence 999999999999999999999999999999999999988667899999999999876 7999999999999999988876
Q ss_pred hc
Q 001411 430 SK 431 (1082)
Q Consensus 430 ~~ 431 (1082)
..
T Consensus 235 ~~ 236 (251)
T PRK14249 235 SR 236 (251)
T ss_pred hC
Confidence 53
|
|
| >PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-40 Score=361.29 Aligned_cols=217 Identities=26% Similarity=0.478 Sum_probs=182.5
Q ss_pred cEEEEEEEEECCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHHhCCCCCCcEEEECCeeCCCCCHHH-Hhhhc
Q 001411 205 QIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKW-LREQM 283 (1082)
Q Consensus 205 ~i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~-~~~~i 283 (1082)
.++++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+... .++.+
T Consensus 3 ~l~~~~l~~~~~~--~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i 80 (241)
T PRK10895 3 TLTAKNLAKAYKG--RRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRGI 80 (241)
T ss_pred eEEEeCcEEEeCC--EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHHhCe
Confidence 3789999999974 35999999999999999999999999999999999999999999999999988776544 56789
Q ss_pred eEEccCCCcChh-cHHHHHhcCCCC---CCHHHHHHHHHHhchHHHHhcCCCCccccccCCCCCCChHHHHHHHHHHhcc
Q 001411 284 GLVSQEPALFAT-SIANNILLGKED---ASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVL 359 (1082)
Q Consensus 284 ~~v~Q~~~l~~~-ti~~ni~~g~~~---~~~~~~~~~~~~~~~~~~i~~lp~g~~t~~g~~g~~LSgGqkqri~lARal~ 359 (1082)
+|++|++.+++. |++||+.++... .+.++.. ..+.+.++.+ |++.........||||||||++||||++
T Consensus 81 ~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~laral~ 153 (241)
T PRK10895 81 GYLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQRE-----DRANELMEEF--HIEHLRDSMGQSLSGGERRRVEIARALA 153 (241)
T ss_pred EEeccCCcccccCcHHHHHhhhhhcccccCHHHHH-----HHHHHHHHHc--CCHHHhhcchhhCCHHHHHHHHHHHHHh
Confidence 999999998885 999999875321 1111111 1122344444 4555556677899999999999999999
Q ss_pred cCCCeeEEeCcccCCCHHHHHHHHHHHHHHc-CCCeEEEEccCccccc-cCCEEEEEeCCEEEEecCchhhhh
Q 001411 360 RNPKILLLDEATSALDAESELIVQRALEKIM-SNRTTIVVAHRLSTVR-DVDTIMVLKNGQVVESGTHVDLIS 430 (1082)
Q Consensus 360 ~~~~illlDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~vtH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~ 430 (1082)
.+|++|||||||++||+.+.+.+.+.+.++. +++|+|++||+++.+. .||++++|++|++++.|+++++..
T Consensus 154 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~ 226 (241)
T PRK10895 154 ANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVRETLAVCERAYIVSQGHLIAHGTPTEILQ 226 (241)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEEeCCeEEeeCCHHHHhc
Confidence 9999999999999999999999999998875 4789999999998775 589999999999999999988764
|
|
| >PRK14268 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-40 Score=364.40 Aligned_cols=219 Identities=29% Similarity=0.450 Sum_probs=182.1
Q ss_pred CcEEEEEEEEECCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHHhCCCC-----CCcEEEECCeeCCCC--CH
Q 001411 204 GQIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEP-----TSGKILLDGHDLKSL--QL 276 (1082)
Q Consensus 204 ~~i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~-----~~G~i~~~g~~~~~~--~~ 276 (1082)
..++++|+++.|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.++|.++... +.
T Consensus 11 ~~l~~~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 88 (258)
T PRK14268 11 PQIKVENLNLWYGE--KQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVDV 88 (258)
T ss_pred eeEEEeeeEEEeCC--eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccchH
Confidence 35999999999974 3499999999999999999999999999999999999985 899999999988643 23
Q ss_pred HHHhhhceEEccCCCcChhcHHHHHhcCCCC--CCHH----HHHHHHHHhchHHHHhcCCCCccccccCCCCCCChHHHH
Q 001411 277 KWLREQMGLVSQEPALFATSIANNILLGKED--ASMD----RVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQ 350 (1082)
Q Consensus 277 ~~~~~~i~~v~Q~~~l~~~ti~~ni~~g~~~--~~~~----~~~~~~~~~~~~~~i~~lp~g~~t~~g~~g~~LSgGqkq 350 (1082)
..+++.++|++|++.+|+.|++||+.++... .+.+ ++.++++..++.+ ............|||||||
T Consensus 89 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~~~~~~~~~~LSgG~~q 161 (258)
T PRK14268 89 VELRKNVGMVFQKPNPFPMSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWD-------ETSDRLKSPALSLSGGQQQ 161 (258)
T ss_pred HHHhhhEEEEecCCccCcccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCc-------chhhhhcCChhhCCHHHHH
Confidence 4567889999999999999999999875321 1222 2333333333211 1122345566789999999
Q ss_pred HHHHHHhcccCCCeeEEeCcccCCCHHHHHHHHHHHHHHcCCCeEEEEccCccccc-cCCEEEEEeCCEEEEecCchhhh
Q 001411 351 RIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVR-DVDTIMVLKNGQVVESGTHVDLI 429 (1082)
Q Consensus 351 ri~lARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~vtH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~ 429 (1082)
|++|||||+.+|+++||||||++||+.+...+.+.|+++.+++|+|++||+++.+. .||+|++|++|++++.|+++++.
T Consensus 162 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 241 (258)
T PRK14268 162 RLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLKKDYTIVIVTHNMQQAARISDYTGFFLMGELIEFGQTRQIF 241 (258)
T ss_pred HHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhhCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 99999999999999999999999999999999999998876799999999999885 48999999999999999998886
Q ss_pred hc
Q 001411 430 SK 431 (1082)
Q Consensus 430 ~~ 431 (1082)
..
T Consensus 242 ~~ 243 (258)
T PRK14268 242 HN 243 (258)
T ss_pred cC
Confidence 43
|
|
| >PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-40 Score=368.31 Aligned_cols=219 Identities=30% Similarity=0.531 Sum_probs=180.3
Q ss_pred cEEEEEEEEECCCCC---CccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHHhCCCCCCcEEEECCeeCCCC----CHH
Q 001411 205 QIEFSEVCFAYPSRP---HMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSL----QLK 277 (1082)
Q Consensus 205 ~i~~~~v~~~y~~~~---~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~----~~~ 277 (1082)
.|+++|++++|++.. ..+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++... +..
T Consensus 2 ~i~~~~l~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (287)
T PRK13641 2 SIKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLK 81 (287)
T ss_pred EEEEEEEEEEcCCCCCccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 378999999997421 3599999999999999999999999999999999999999999999999998643 245
Q ss_pred HHhhhceEEccCC--CcChhcHHHHHhcCCC--CCCHHHHHHHHHHhchHHHHhcCCCCcc-ccccCCCCCCChHHHHHH
Q 001411 278 WLREQMGLVSQEP--ALFATSIANNILLGKE--DASMDRVIEAAKAANAHSFVEGLPDGYQ-TQVGEGGTQLSGGQKQRI 352 (1082)
Q Consensus 278 ~~~~~i~~v~Q~~--~l~~~ti~~ni~~g~~--~~~~~~~~~~~~~~~~~~~i~~lp~g~~-t~~g~~g~~LSgGqkqri 352 (1082)
..++.|+|++|+| .+|+.|++|||.++.. ..+.++..+. +.+.++.+ |++ ........+||||||||+
T Consensus 82 ~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~-----~~~~l~~~--gL~~~~~~~~~~~LSgGq~qrl 154 (287)
T PRK13641 82 KLRKKVSLVFQFPEAQLFENTVLKDVEFGPKNFGFSEDEAKEK-----ALKWLKKV--GLSEDLISKSPFELSGGQMRRV 154 (287)
T ss_pred HHHhceEEEEeChhhhhccchHHHHHHHHHHHcCCCHHHHHHH-----HHHHHHHc--CCChhHhhCCcccCCHHHHHHH
Confidence 6677899999998 5777899999987532 1122221111 11223332 443 234556678999999999
Q ss_pred HHHHhcccCCCeeEEeCcccCCCHHHHHHHHHHHHHHc-CCCeEEEEccCccccc-cCCEEEEEeCCEEEEecCchhhhh
Q 001411 353 AIARAVLRNPKILLLDEATSALDAESELIVQRALEKIM-SNRTTIVVAHRLSTVR-DVDTIMVLKNGQVVESGTHVDLIS 430 (1082)
Q Consensus 353 ~lARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~vtH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~ 430 (1082)
+|||||+.+|++|||||||++||+.+.+.+.+.|.++. ++.|+|++||+++.+. .||++++|++|++++.|+++++..
T Consensus 155 ~laral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tvlivsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 234 (287)
T PRK13641 155 AIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMDDVAEYADDVLVLEHGKLIKHASPKEIFS 234 (287)
T ss_pred HHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 99999999999999999999999999999999999875 4789999999999875 599999999999999999988765
|
|
| >cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-40 Score=358.93 Aligned_cols=211 Identities=35% Similarity=0.537 Sum_probs=172.9
Q ss_pred EEEEEEEEECCCCC--CccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHHhCCCCCCcEEEECCeeCCCCCH---HHHh
Q 001411 206 IEFSEVCFAYPSRP--HMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQL---KWLR 280 (1082)
Q Consensus 206 i~~~~v~~~y~~~~--~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~---~~~~ 280 (1082)
++++||+++|++.. .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. ..+|
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (228)
T cd03257 2 LEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIRR 81 (228)
T ss_pred eEEEeeeEeccCCCcceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccchhhHHHhh
Confidence 68999999997531 259999999999999999999999999999999999999999999999999987663 5678
Q ss_pred hhceEEccCCC--cC-hhcHHHHHhcCCC----CCCHHHHHHHHHHhchHHHHhcCCCCcc-ccccCCCCCCChHHHHHH
Q 001411 281 EQMGLVSQEPA--LF-ATSIANNILLGKE----DASMDRVIEAAKAANAHSFVEGLPDGYQ-TQVGEGGTQLSGGQKQRI 352 (1082)
Q Consensus 281 ~~i~~v~Q~~~--l~-~~ti~~ni~~g~~----~~~~~~~~~~~~~~~~~~~i~~lp~g~~-t~~g~~g~~LSgGqkqri 352 (1082)
+.++|++|++. ++ ..|++||+.++.. ....+....+. .+.++.+ |+. ........+||||||||+
T Consensus 82 ~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~-----~~~l~~~--~l~~~~~~~~~~~LS~G~~qrv 154 (228)
T cd03257 82 KEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEAV-----LLLLVGV--GLPEEVLNRYPHELSGGQRQRV 154 (228)
T ss_pred ccEEEEecCchhhcCCcCCHHHHHHHHHHhccCCcHHHHHHHHH-----HHHHHHC--CCChhHhhCCchhcCHHHHHHH
Confidence 89999999993 44 4699999976421 11111111110 1223333 342 345666778999999999
Q ss_pred HHHHhcccCCCeeEEeCcccCCCHHHHHHHHHHHHHHcC--CCeEEEEccCccccc-cCCEEEEEeCCEEEEec
Q 001411 353 AIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMS--NRTTIVVAHRLSTVR-DVDTIMVLKNGQVVESG 423 (1082)
Q Consensus 353 ~lARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~vtH~~~~~~-~~d~i~~l~~G~i~~~g 423 (1082)
+|||||+.+|+++||||||++||+.+...+.+.|+++.+ ++|+|++||+++.+. .||+|++|++|++++.|
T Consensus 155 ~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g 228 (228)
T cd03257 155 AIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLGVVAKIADRVAVMYAGKIVEEG 228 (228)
T ss_pred HHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEeCCEEEecC
Confidence 999999999999999999999999999999999998754 789999999999987 59999999999998754
|
The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. |
| >PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-40 Score=363.55 Aligned_cols=214 Identities=26% Similarity=0.435 Sum_probs=183.9
Q ss_pred CcEEEEEEEEECCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHHhCCCCCCcEEEECCeeCCCCCHHHHhhhc
Q 001411 204 GQIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQM 283 (1082)
Q Consensus 204 ~~i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i 283 (1082)
..|+++|++++|++ ..+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+...+++.+
T Consensus 6 ~~l~i~~l~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 83 (265)
T PRK10253 6 ARLRGEQLTLGYGK--YTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVARRI 83 (265)
T ss_pred cEEEEEEEEEEECC--EEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEEhhhCCHHHHhhhe
Confidence 46999999999975 3499999999999999999999999999999999999999999999999999887777788899
Q ss_pred eEEccCCCcCh-hcHHHHHhcCC-CC------CC---HHHHHHHHHHhchHHHHhcCCCCccccccCCCCCCChHHHHHH
Q 001411 284 GLVSQEPALFA-TSIANNILLGK-ED------AS---MDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRI 352 (1082)
Q Consensus 284 ~~v~Q~~~l~~-~ti~~ni~~g~-~~------~~---~~~~~~~~~~~~~~~~i~~lp~g~~t~~g~~g~~LSgGqkqri 352 (1082)
+|++|++.+|. .|++||+.++. +. .. .+++.++++..++.+. .......||||||||+
T Consensus 84 ~~v~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~Gq~qrv 152 (265)
T PRK10253 84 GLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHL-----------ADQSVDTLSGGQRQRA 152 (265)
T ss_pred EEeeccCcCCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHH-----------hcCCcccCChHHHHHH
Confidence 99999998875 59999998753 11 01 1234445555444333 3445578999999999
Q ss_pred HHHHhcccCCCeeEEeCcccCCCHHHHHHHHHHHHHHcC--CCeEEEEccCccccc-cCCEEEEEeCCEEEEecCchhhh
Q 001411 353 AIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMS--NRTTIVVAHRLSTVR-DVDTIMVLKNGQVVESGTHVDLI 429 (1082)
Q Consensus 353 ~lARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~vtH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~ 429 (1082)
+||||++.+|+++||||||++||+.+.+.+.+.|.++.+ +.|+|++||+++.+. .||++++|++|++++.|+++++.
T Consensus 153 ~laral~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 232 (265)
T PRK10253 153 WIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLNQACRYASHLIALREGKIVAQGAPKEIV 232 (265)
T ss_pred HHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 999999999999999999999999999999999998753 689999999999875 58999999999999999998876
Q ss_pred h
Q 001411 430 S 430 (1082)
Q Consensus 430 ~ 430 (1082)
.
T Consensus 233 ~ 233 (265)
T PRK10253 233 T 233 (265)
T ss_pred h
Confidence 5
|
|
| >PRK13536 nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-40 Score=374.49 Aligned_cols=217 Identities=28% Similarity=0.491 Sum_probs=179.3
Q ss_pred cEEEEEEEEECCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHHhCCCCCCcEEEECCeeCCCCCHHHHhhhce
Q 001411 205 QIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMG 284 (1082)
Q Consensus 205 ~i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 284 (1082)
.|+++|++++|++. .+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++.... ...++.||
T Consensus 41 ~i~i~nl~k~y~~~--~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~~-~~~~~~ig 117 (340)
T PRK13536 41 AIDLAGVSKSYGDK--AVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARA-RLARARIG 117 (340)
T ss_pred eEEEEEEEEEECCE--EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcch-HHHhccEE
Confidence 59999999999743 4999999999999999999999999999999999999999999999999987544 46788899
Q ss_pred EEccCCCcCh-hcHHHHHhcCCCC--CCHHHHHHHHHHhchHHHHhcCCCCccccccCCCCCCChHHHHHHHHHHhcccC
Q 001411 285 LVSQEPALFA-TSIANNILLGKED--ASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRN 361 (1082)
Q Consensus 285 ~v~Q~~~l~~-~ti~~ni~~g~~~--~~~~~~~~~~~~~~~~~~i~~lp~g~~t~~g~~g~~LSgGqkqri~lARal~~~ 361 (1082)
|+||++.++. .|++||+.+.... .+..+..+.++ .+.+. ..+++..++ ...+||||||||++|||||+.+
T Consensus 118 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~--~ll~~-~~L~~~~~~----~~~~LS~G~kqrv~lA~aL~~~ 190 (340)
T PRK13536 118 VVPQFDNLDLEFTVRENLLVFGRYFGMSTREIEAVIP--SLLEF-ARLESKADA----RVSDLSGGMKRRLTLARALIND 190 (340)
T ss_pred EEeCCccCCCCCcHHHHHHHHHHHcCCCHHHHHHHHH--HHHHH-cCCchhhCC----ChhhCCHHHHHHHHHHHHHhcC
Confidence 9999999875 4999999853211 12222221111 11111 133333333 4458999999999999999999
Q ss_pred CCeeEEeCcccCCCHHHHHHHHHHHHHHc-CCCeEEEEccCcccccc-CCEEEEEeCCEEEEecCchhhhhc
Q 001411 362 PKILLLDEATSALDAESELIVQRALEKIM-SNRTTIVVAHRLSTVRD-VDTIMVLKNGQVVESGTHVDLISK 431 (1082)
Q Consensus 362 ~~illlDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 431 (1082)
|+++||||||++||+.+.+.+++.|.++. +++|+|++||+++.+.. ||+|++|++|+++..|+++++...
T Consensus 191 P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~~g~tilisSH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~~~ 262 (340)
T PRK13536 191 PQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLEAGRKIAEGRPHALIDE 262 (340)
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhh
Confidence 99999999999999999999999999875 47899999999999865 999999999999999999998653
|
|
| >cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-41 Score=355.81 Aligned_cols=198 Identities=33% Similarity=0.562 Sum_probs=165.2
Q ss_pred EEEEEEEECCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHHhCCCCCCcEEEECCeeCCCCCHHHHhhhceEE
Q 001411 207 EFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGLV 286 (1082)
Q Consensus 207 ~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v 286 (1082)
+++|++++|++ ..+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++. .+++.++|+
T Consensus 1 ~~~~l~~~~~~--~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~-----~~~~~i~~v 73 (213)
T cd03235 1 EVEDLTVSYGG--HPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLE-----KERKRIGYV 73 (213)
T ss_pred CcccceeEECC--EEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCccHH-----HHHhheEEe
Confidence 36799999975 34999999999999999999999999999999999999999999999998764 467789999
Q ss_pred ccCCCc---ChhcHHHHHhcCCCCC----------CHHHHHHHHHHhchHHHHhcCCCCccccccCCCCCCChHHHHHHH
Q 001411 287 SQEPAL---FATSIANNILLGKEDA----------SMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIA 353 (1082)
Q Consensus 287 ~Q~~~l---~~~ti~~ni~~g~~~~----------~~~~~~~~~~~~~~~~~i~~lp~g~~t~~g~~g~~LSgGqkqri~ 353 (1082)
+|++.+ ++.|++||+.++.... ..+++.++++..++.+.. .....+||||||||++
T Consensus 74 ~q~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LSgG~~qrv~ 142 (213)
T cd03235 74 PQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELA-----------DRQIGELSGGQQQRVL 142 (213)
T ss_pred ccccccccCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHH-----------hCCcccCCHHHHHHHH
Confidence 999876 5679999998764311 112344445555444333 3344689999999999
Q ss_pred HHHhcccCCCeeEEeCcccCCCHHHHHHHHHHHHHHc-CCCeEEEEccCcccccc-CCEEEEEeCCEEEEec
Q 001411 354 IARAVLRNPKILLLDEATSALDAESELIVQRALEKIM-SNRTTIVVAHRLSTVRD-VDTIMVLKNGQVVESG 423 (1082)
Q Consensus 354 lARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~g 423 (1082)
|||||+.+|+++||||||++||+.+.+.+.+.|.++. +++|+|++||+++.+.. ||++++|++| +++.|
T Consensus 143 la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~~-~~~~g 213 (213)
T cd03235 143 LARALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRREGMTILVVTHDLGLVLEYFDRVLLLNRT-VVASG 213 (213)
T ss_pred HHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEcCc-EeecC
Confidence 9999999999999999999999999999999999875 57899999999999865 8999999886 55543
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. |
| >PRK14251 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-40 Score=363.57 Aligned_cols=218 Identities=31% Similarity=0.501 Sum_probs=181.3
Q ss_pred cEEEEEEEEECCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHHhCCC-----CCCcEEEECCeeCCC--CCHH
Q 001411 205 QIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYE-----PTSGKILLDGHDLKS--LQLK 277 (1082)
Q Consensus 205 ~i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~-----~~~G~i~~~g~~~~~--~~~~ 277 (1082)
.|+++|++|+|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|+++.. .+..
T Consensus 4 ~l~~~~l~~~~~~--~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~~~ 81 (251)
T PRK14251 4 IISAKDVHLSYGN--YEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDLV 81 (251)
T ss_pred eEEEEeeEEEECC--eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccchHH
Confidence 4899999999974 349999999999999999999999999999999999997 489999999998854 3445
Q ss_pred HHhhhceEEccCCCcChhcHHHHHhcCCCCC---CH----HHHHHHHHHhchHHHHhcCCCCccccccCCCCCCChHHHH
Q 001411 278 WLREQMGLVSQEPALFATSIANNILLGKEDA---SM----DRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQ 350 (1082)
Q Consensus 278 ~~~~~i~~v~Q~~~l~~~ti~~ni~~g~~~~---~~----~~~~~~~~~~~~~~~i~~lp~g~~t~~g~~g~~LSgGqkq 350 (1082)
.+++.++|++|++.+|+.|++||+.++.... .. +++.++++..+++. .........+.+|||||||
T Consensus 82 ~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~~~~~~~~~~LS~Gq~q 154 (251)
T PRK14251 82 ELRKEVGMVFQQPTPFPFSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWK-------ETKDNLDRNAQAFSGGQQQ 154 (251)
T ss_pred HhhccEEEEecCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCc-------chHHHhccChhhCCHHHHH
Confidence 6778899999999999999999998753211 11 12333333333311 0112234566799999999
Q ss_pred HHHHHHhcccCCCeeEEeCcccCCCHHHHHHHHHHHHHHcCCCeEEEEccCcccccc-CCEEEEEeCCEEEEecCchhhh
Q 001411 351 RIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRD-VDTIMVLKNGQVVESGTHVDLI 429 (1082)
Q Consensus 351 ri~lARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~ 429 (1082)
|++||||++++|+++||||||++||+.+.+.+.+.|.++.+++|+|+|||+++.+.. ||+|++|++|++++.|+++++.
T Consensus 155 r~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 234 (251)
T PRK14251 155 RICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELKHQYTFIMVTHNLQQAGRISDQTAFLMNGDLIEAGPTEEMF 234 (251)
T ss_pred HHHHHHHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHHHcCCeEEEEECCHHHHHhhcCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999999999999999999988767899999999998765 8999999999999999998876
Q ss_pred hc
Q 001411 430 SK 431 (1082)
Q Consensus 430 ~~ 431 (1082)
..
T Consensus 235 ~~ 236 (251)
T PRK14251 235 IA 236 (251)
T ss_pred hC
Confidence 44
|
|
| >PRK14239 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-40 Score=362.66 Aligned_cols=218 Identities=28% Similarity=0.471 Sum_probs=181.1
Q ss_pred cEEEEEEEEECCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHHhCC--CC---CCcEEEECCeeCCCC--CHH
Q 001411 205 QIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLY--EP---TSGKILLDGHDLKSL--QLK 277 (1082)
Q Consensus 205 ~i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~--~~---~~G~i~~~g~~~~~~--~~~ 277 (1082)
.++++|++++|+++ .+|+|+||++++||+++|+||||||||||+++|+|++ +| ++|+|.++|+++... +..
T Consensus 5 ~l~~~~l~~~~~~~--~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~~~ 82 (252)
T PRK14239 5 ILQVSDLSVYYNKK--KALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDTV 82 (252)
T ss_pred eEEEEeeEEEECCe--eeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcccchH
Confidence 48999999999743 4999999999999999999999999999999999985 36 599999999998642 345
Q ss_pred HHhhhceEEccCCCcChhcHHHHHhcCCCC---CCH----HHHHHHHHHhchHHHHhcCCCCccccccCCCCCCChHHHH
Q 001411 278 WLREQMGLVSQEPALFATSIANNILLGKED---ASM----DRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQ 350 (1082)
Q Consensus 278 ~~~~~i~~v~Q~~~l~~~ti~~ni~~g~~~---~~~----~~~~~~~~~~~~~~~i~~lp~g~~t~~g~~g~~LSgGqkq 350 (1082)
.+++.++|++|++.+|+.|++||+.++... ... +++.++++..++.+ +..+..+....+|||||||
T Consensus 83 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~~~~~~~~~~LS~G~~q 155 (252)
T PRK14239 83 DLRKEIGMVFQQPNPFPMSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWD-------EVKDRLHDSALGLSGGQQQ 155 (252)
T ss_pred hhhhcEEEEecCCccCcCcHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCch-------hHHHHHhcCcccCCHHHHH
Confidence 677889999999999999999999875211 111 22233333333221 1223455667789999999
Q ss_pred HHHHHHhcccCCCeeEEeCcccCCCHHHHHHHHHHHHHHcCCCeEEEEccCccccc-cCCEEEEEeCCEEEEecCchhhh
Q 001411 351 RIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVR-DVDTIMVLKNGQVVESGTHVDLI 429 (1082)
Q Consensus 351 ri~lARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~vtH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~ 429 (1082)
|++||||++.+|++|||||||++||+.+...+.+.|+++.+++|+|++||+++.+. .||+|++|++|++++.|+++++.
T Consensus 156 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 235 (252)
T PRK14239 156 RVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKDDYTMLLVTRSMQQASRISDRTGFFLDGDLIEYNDTKQMF 235 (252)
T ss_pred HHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHhhCCeEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 99999999999999999999999999999999999998866789999999999875 58999999999999999999886
Q ss_pred hc
Q 001411 430 SK 431 (1082)
Q Consensus 430 ~~ 431 (1082)
+.
T Consensus 236 ~~ 237 (252)
T PRK14239 236 MN 237 (252)
T ss_pred hC
Confidence 54
|
|
| >TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-40 Score=370.15 Aligned_cols=216 Identities=23% Similarity=0.445 Sum_probs=183.0
Q ss_pred EEEEEEEEECCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHHhCCCCCCcEEEECCeeCCCCCHHHHhhhceE
Q 001411 206 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGL 285 (1082)
Q Consensus 206 i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 285 (1082)
++++|++++|++ ..+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. +...+++.+||
T Consensus 3 l~~~~l~~~~~~--~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~~~~-~~~~~~~~ig~ 79 (301)
T TIGR03522 3 IRVSSLTKLYGT--QNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQ-NPKEVQRNIGY 79 (301)
T ss_pred EEEEEEEEEECC--EEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccc-ChHHHHhceEE
Confidence 789999999974 349999999999999999999999999999999999999999999999999876 34567889999
Q ss_pred EccCCCcChh-cHHHHHhcCCCC--CCHHHHHHHHHHhchHHHHhcCCCCccccccCCCCCCChHHHHHHHHHHhcccCC
Q 001411 286 VSQEPALFAT-SIANNILLGKED--ASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNP 362 (1082)
Q Consensus 286 v~Q~~~l~~~-ti~~ni~~g~~~--~~~~~~~~~~~~~~~~~~i~~lp~g~~t~~g~~g~~LSgGqkqri~lARal~~~~ 362 (1082)
+||++.+++. |++||+.+.... ...++..+. +.+.++.+ |++.........||||||||++|||||+.+|
T Consensus 80 ~~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~-----~~~~l~~~--gl~~~~~~~~~~LS~G~~qrv~la~al~~~p 152 (301)
T TIGR03522 80 LPEHNPLYLDMYVREYLQFIAGIYGMKGQLLKQR-----VEEMIELV--GLRPEQHKKIGQLSKGYRQRVGLAQALIHDP 152 (301)
T ss_pred ecCCCCCCCCCcHHHHHHHHHHHcCCCHHHHHHH-----HHHHHHHC--CCchHhcCchhhCCHHHHHHHHHHHHHhcCC
Confidence 9999999876 999999753211 111111111 11223333 4555556667799999999999999999999
Q ss_pred CeeEEeCcccCCCHHHHHHHHHHHHHHcCCCeEEEEccCcccccc-CCEEEEEeCCEEEEecCchhhhhc
Q 001411 363 KILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRD-VDTIMVLKNGQVVESGTHVDLISK 431 (1082)
Q Consensus 363 ~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 431 (1082)
+++||||||++||+.+.+.+++.++++.+++|+|++||+++.+.. ||+|++|++|+++..|+++++.+.
T Consensus 153 ~lliLDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sH~l~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 222 (301)
T TIGR03522 153 KVLILDEPTTGLDPNQLVEIRNVIKNIGKDKTIILSTHIMQEVEAICDRVIIINKGKIVADKKLDELSAA 222 (301)
T ss_pred CEEEEcCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHHh
Confidence 999999999999999999999999998778999999999998865 999999999999999999998654
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. |
| >TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-40 Score=377.04 Aligned_cols=212 Identities=31% Similarity=0.500 Sum_probs=179.1
Q ss_pred eEEEECCCCCCcccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCccCCCCC----HHHHhcceE
Q 001411 839 NVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLN----LRSLRRKIG 914 (1082)
Q Consensus 839 ~Vs~~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~----~~~lR~~i~ 914 (1082)
|++++|+. .. + |+||+|++||+++|+||||||||||+++|.|+++|++|+|.+||.++...+ ...+|++++
T Consensus 4 ~l~~~~~~---~~-~-~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~ 78 (354)
T TIGR02142 4 RFSKRLGD---FS-L-DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIG 78 (354)
T ss_pred EEEEEECC---EE-E-EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccCccccccchhhCCeE
Confidence 89999962 33 4 999999999999999999999999999999999999999999999986542 345688999
Q ss_pred EEcccCccccc-cHHHHhccCCCCCCH----HHHHHHHHHhcHHHHHhhCcccccccccCCCCCCChhHHHHHHHHHHHc
Q 001411 915 LVQQEPALFST-TIYENIKYGNEDASE----IELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAIL 989 (1082)
Q Consensus 915 ~VpQdp~Lf~g-TIreNl~~~~~~~~d----~ei~~al~~a~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlaLARAlL 989 (1082)
||||++.+|+. |+++|+.++...... +.+.+.++..++.+ .......+||||||||++|||||+
T Consensus 79 ~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~gL~~-----------~~~~~~~~LSgGqkqRvalAraL~ 147 (354)
T TIGR02142 79 YVFQEARLFPHLSVRGNLRYGMKRARPSERRISFERVIELLGIGH-----------LLGRLPGRLSGGEKQRVAIGRALL 147 (354)
T ss_pred EEecCCccCCCCcHHHHHHHHhhccChhHHHHHHHHHHHHcCChh-----------HhcCChhhCCHHHHHHHHHHHHHH
Confidence 99999999975 999999876432221 22444555554443 333445689999999999999999
Q ss_pred cCCCEEEeeCCCCCCCHHHHHHHHHHHHHhcC--CceEEEEecCchhhhc-cCEEEEEeCCEEEEecChHHHhhhccchH
Q 001411 990 KNPSILLLDEATSALDTASENLIQEALDKLME--GRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGSHEQLLRKENGIY 1066 (1082)
Q Consensus 990 ~~~~ILlLDEaTS~LD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~G~~~eLl~~~~g~f 1066 (1082)
++|++|||||||++||+.+.+.+.+.|++..+ ++|+|+|||+++.+.. ||+|++|++|++++.|+++++..++...|
T Consensus 148 ~~p~lllLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~~~~~ 227 (354)
T TIGR02142 148 SSPRLLLMDEPLAALDDPRKYEILPYLERLHAEFGIPILYVSHSLQEVLRLADRVVVLEDGRVAAAGPIAEVWASPDLPW 227 (354)
T ss_pred cCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCEEEEECCHHHHhcCcCccc
Confidence 99999999999999999999999999998753 7899999999999865 99999999999999999999987655444
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter. |
| >PRK14243 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-40 Score=362.40 Aligned_cols=218 Identities=29% Similarity=0.467 Sum_probs=183.9
Q ss_pred cEEEEEEEEECCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHHhCCC-----CCCcEEEECCeeCCC--CCHH
Q 001411 205 QIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYE-----PTSGKILLDGHDLKS--LQLK 277 (1082)
Q Consensus 205 ~i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~-----~~~G~i~~~g~~~~~--~~~~ 277 (1082)
.|+++||+++|++. ++|+|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|+++.. .+..
T Consensus 10 ~l~i~~v~~~~~~~--~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 87 (264)
T PRK14243 10 VLRTENLNVYYGSF--LAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDPV 87 (264)
T ss_pred EEEEeeeEEEECCE--EEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccccccChH
Confidence 58999999999743 49999999999999999999999999999999999986 489999999998853 3456
Q ss_pred HHhhhceEEccCCCcChhcHHHHHhcCCCCC--C---HHHHHHHHHHhchHHHHhcCCCCccccccCCCCCCChHHHHHH
Q 001411 278 WLREQMGLVSQEPALFATSIANNILLGKEDA--S---MDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRI 352 (1082)
Q Consensus 278 ~~~~~i~~v~Q~~~l~~~ti~~ni~~g~~~~--~---~~~~~~~~~~~~~~~~i~~lp~g~~t~~g~~g~~LSgGqkqri 352 (1082)
.+++.++|++|++.+|+.|++||+.++.... . .+++.++++.+++.+.+. ...+..+.+||||||||+
T Consensus 88 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~~~~~LSgGq~qrv 160 (264)
T PRK14243 88 EVRRRIGMVFQKPNPFPKSIYDNIAYGARINGYKGDMDELVERSLRQAALWDEVK-------DKLKQSGLSLSGGQQQRL 160 (264)
T ss_pred HHhhhEEEEccCCccccccHHHHHHhhhhhcCcchHHHHHHHHHHHHhCchhhHH-------HHhcCCcccCCHHHHHHH
Confidence 7788899999999999889999998764311 1 123334445444433332 234556778999999999
Q ss_pred HHHHhcccCCCeeEEeCcccCCCHHHHHHHHHHHHHHcCCCeEEEEccCcccccc-CCEEEEEe---------CCEEEEe
Q 001411 353 AIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRD-VDTIMVLK---------NGQVVES 422 (1082)
Q Consensus 353 ~lARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~vtH~~~~~~~-~d~i~~l~---------~G~i~~~ 422 (1082)
+|||||+.+|++|||||||++||+.+...+.+.|.++.+++|+|++||+++.+.. ||+|++|+ +|++++.
T Consensus 161 ~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tvi~vtH~~~~~~~~~d~v~~l~~~~~~~~~~~g~i~~~ 240 (264)
T PRK14243 161 CIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKEQYTIIIVTHNMQQAARVSDMTAFFNVELTEGGGRYGYLVEF 240 (264)
T ss_pred HHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEecccccccccCceEEEe
Confidence 9999999999999999999999999999999999998777899999999998765 89999998 8999999
Q ss_pred cCchhhhhc
Q 001411 423 GTHVDLISK 431 (1082)
Q Consensus 423 g~~~~l~~~ 431 (1082)
|+++++.+.
T Consensus 241 ~~~~~~~~~ 249 (264)
T PRK14243 241 DRTEKIFNS 249 (264)
T ss_pred CCHHHHHhC
Confidence 999998654
|
|
| >PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-40 Score=362.67 Aligned_cols=219 Identities=30% Similarity=0.526 Sum_probs=180.7
Q ss_pred CcEEEEEEEEECCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHHhCCCCCCcEEEECCeeCCCC---------
Q 001411 204 GQIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSL--------- 274 (1082)
Q Consensus 204 ~~i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~--------- 274 (1082)
+.++++|+++.|++ ..+|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.++...
T Consensus 4 ~~l~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (257)
T PRK10619 4 NKLNVIDLHKRYGE--HEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQLKV 81 (257)
T ss_pred ccEEEeeeEEEECC--EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEccccccccccccc
Confidence 46999999999974 3499999999999999999999999999999999999999999999999987532
Q ss_pred ----CHHHHhhhceEEccCCCcChh-cHHHHHhcCCC---CCCHHHHHHHHHHhchHHHHhcCCCCccccc-cCCCCCCC
Q 001411 275 ----QLKWLREQMGLVSQEPALFAT-SIANNILLGKE---DASMDRVIEAAKAANAHSFVEGLPDGYQTQV-GEGGTQLS 345 (1082)
Q Consensus 275 ----~~~~~~~~i~~v~Q~~~l~~~-ti~~ni~~g~~---~~~~~~~~~~~~~~~~~~~i~~lp~g~~t~~-g~~g~~LS 345 (1082)
....+++.++|++|++.+++. |++||+.++.. ....++..+ .+.+.++.+ |+.... ......||
T Consensus 82 ~~~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~~~~~~~~~~-----~~~~~l~~~--gl~~~~~~~~~~~LS 154 (257)
T PRK10619 82 ADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARE-----RAVKYLAKV--GIDERAQGKYPVHLS 154 (257)
T ss_pred ccchHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhCCCCHHHHHH-----HHHHHHHHc--CCChhhhhCCcccCC
Confidence 134567889999999999975 99999986421 111111111 111223333 443332 45667899
Q ss_pred hHHHHHHHHHHhcccCCCeeEEeCcccCCCHHHHHHHHHHHHHHc-CCCeEEEEccCcccccc-CCEEEEEeCCEEEEec
Q 001411 346 GGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIM-SNRTTIVVAHRLSTVRD-VDTIMVLKNGQVVESG 423 (1082)
Q Consensus 346 gGqkqri~lARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~g 423 (1082)
||||||++|||||+++|+++||||||++||+.+.+.+.+.|+++. +++|+|+|||+++.+.. ||+|++|++|++++.|
T Consensus 155 ~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~ 234 (257)
T PRK10619 155 GGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEG 234 (257)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeC
Confidence 999999999999999999999999999999999999999999875 47999999999999875 8999999999999999
Q ss_pred Cchhhhhc
Q 001411 424 THVDLISK 431 (1082)
Q Consensus 424 ~~~~l~~~ 431 (1082)
+++++...
T Consensus 235 ~~~~~~~~ 242 (257)
T PRK10619 235 APEQLFGN 242 (257)
T ss_pred CHHHhhhC
Confidence 99887653
|
|
| >PRK11248 tauB taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-40 Score=361.10 Aligned_cols=202 Identities=30% Similarity=0.465 Sum_probs=171.4
Q ss_pred EEEEeEEEECCCCCCcccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCccCCCCCHHHHhcceE
Q 001411 835 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRKIG 914 (1082)
Q Consensus 835 I~~~~Vs~~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR~~i~ 914 (1082)
|+++|++++|+ +.++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++... +..++
T Consensus 2 l~~~~l~~~~~---~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~-----~~~~~ 73 (255)
T PRK11248 2 LQISHLYADYG---GKPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGP-----GAERG 73 (255)
T ss_pred EEEEEEEEEeC---CeeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCC-----CCcEE
Confidence 78999999996 34699999999999999999999999999999999999999999999999998642 34699
Q ss_pred EEcccCcccc-ccHHHHhccCCC--CCCH----HHHHHHHHHhcHHHHHhhCcccccccccCCCCCCChhHHHHHHHHHH
Q 001411 915 LVQQEPALFS-TTIYENIKYGNE--DASE----IELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARA 987 (1082)
Q Consensus 915 ~VpQdp~Lf~-gTIreNl~~~~~--~~~d----~ei~~al~~a~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlaLARA 987 (1082)
|+||++.+|+ .|+++|+.++.. .... +++.++++..++.+. ......+||||||||++||||
T Consensus 74 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~-----------~~~~~~~LSgGq~qrl~lara 142 (255)
T PRK11248 74 VVFQNEGLLPWRNVQDNVAFGLQLAGVEKMQRLEIAHQMLKKVGLEGA-----------EKRYIWQLSGGQRQRVGIARA 142 (255)
T ss_pred EEeCCCccCCCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhH-----------hhCChhhCCHHHHHHHHHHHH
Confidence 9999999887 699999976421 1121 234455555555433 233456799999999999999
Q ss_pred HccCCCEEEeeCCCCCCCHHHHHHHHHHHHHhc--CCceEEEEecCchhhhc-cCEEEEEe--CCEEEEecCh
Q 001411 988 ILKNPSILLLDEATSALDTASENLIQEALDKLM--EGRTTIMVAHRLSTIRN-ADKIAVLQ--QGKVAEIGSH 1055 (1082)
Q Consensus 988 lL~~~~ILlLDEaTS~LD~~te~~I~~~l~~~~--~~~TvI~IaHrl~ti~~-~DrI~Vl~--~G~ive~G~~ 1055 (1082)
|+++|++|||||||++||+.+.+.+.+.|++.. .++|+|+|||+++.+.. ||+|++|+ +|++++.+++
T Consensus 143 l~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~~~G~i~~~~~~ 215 (255)
T PRK11248 143 LAANPQLLLLDEPFGALDAFTREQMQTLLLKLWQETGKQVLLITHDIEEAVFMATELVLLSPGPGRVVERLPL 215 (255)
T ss_pred HhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCcEEEEEecC
Confidence 999999999999999999999999999999863 37999999999999865 99999998 5999998754
|
|
| >PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-40 Score=355.26 Aligned_cols=207 Identities=28% Similarity=0.373 Sum_probs=174.0
Q ss_pred cEEEEEEEEECCCCC--CccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHHhCCCCCCcEEEECCeeCCCCCHHH---H
Q 001411 205 QIEFSEVCFAYPSRP--HMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKW---L 279 (1082)
Q Consensus 205 ~i~~~~v~~~y~~~~--~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~---~ 279 (1082)
.++++|++++|++.. .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+... .
T Consensus 6 ~l~~~~l~~~~~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 85 (228)
T PRK10584 6 IVEVHHLKKSVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAKL 85 (228)
T ss_pred eEEEeeeEEEccCCCcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccCCHHHHHHH
Confidence 489999999997532 24999999999999999999999999999999999999999999999999998776543 2
Q ss_pred -hhhceEEccCCCcChh-cHHHHHhcCCC--CCC----HHHHHHHHHHhchHHHHhcCCCCccccccCCCCCCChHHHHH
Q 001411 280 -REQMGLVSQEPALFAT-SIANNILLGKE--DAS----MDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQR 351 (1082)
Q Consensus 280 -~~~i~~v~Q~~~l~~~-ti~~ni~~g~~--~~~----~~~~~~~~~~~~~~~~i~~lp~g~~t~~g~~g~~LSgGqkqr 351 (1082)
++.++|++|++.+++. |+.||+.++.. ... .+++.++++..++.+.+.+ ....||||||||
T Consensus 86 ~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~Ge~qr 154 (228)
T PRK10584 86 RAKHVGFVFQSFMLIPTLNALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLDH-----------LPAQLSGGEQQR 154 (228)
T ss_pred HhheEEEEEcccccCCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhC-----------ChhhCCHHHHHH
Confidence 3579999999998875 99999986421 111 2334455555555444333 345899999999
Q ss_pred HHHHHhcccCCCeeEEeCcccCCCHHHHHHHHHHHHHHcC--CCeEEEEccCccccccCCEEEEEeCCEEEEe
Q 001411 352 IAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMS--NRTTIVVAHRLSTVRDVDTIMVLKNGQVVES 422 (1082)
Q Consensus 352 i~lARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~vtH~~~~~~~~d~i~~l~~G~i~~~ 422 (1082)
++|||||+.+|+++||||||++||+.+.+.+.+.|+++.+ ++|+|++||+++.+..||++++|++|++++.
T Consensus 155 l~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~d~i~~l~~g~i~~~ 227 (228)
T PRK10584 155 VALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQLAARCDRRLRLVNGQLQEE 227 (228)
T ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEec
Confidence 9999999999999999999999999999999999998743 6899999999999888999999999999753
|
|
| >PRK14253 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-40 Score=360.28 Aligned_cols=217 Identities=28% Similarity=0.485 Sum_probs=182.9
Q ss_pred cEEEEEEEEECCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHHhCCCC-----CCcEEEECCeeCC-CCCHHH
Q 001411 205 QIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEP-----TSGKILLDGHDLK-SLQLKW 278 (1082)
Q Consensus 205 ~i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~-----~~G~i~~~g~~~~-~~~~~~ 278 (1082)
.++++|+++.|++ ..+|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.++. ..+...
T Consensus 3 ~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~ 80 (249)
T PRK14253 3 KFNIENLDLFYGE--NQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVAD 80 (249)
T ss_pred eEEEeccEEEECC--eeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccchHH
Confidence 4889999999974 3499999999999999999999999999999999999986 5999999999885 345667
Q ss_pred HhhhceEEccCCCcChhcHHHHHhcCCCC--CC-H----HHHHHHHHHhchHHHHhcCCCCccccccCCCCCCChHHHHH
Q 001411 279 LREQMGLVSQEPALFATSIANNILLGKED--AS-M----DRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQR 351 (1082)
Q Consensus 279 ~~~~i~~v~Q~~~l~~~ti~~ni~~g~~~--~~-~----~~~~~~~~~~~~~~~i~~lp~g~~t~~g~~g~~LSgGqkqr 351 (1082)
+++.++|++|++.+|+.|++||+.++... .. . +++.++++..++.+ ++.+.......+||||||||
T Consensus 81 ~~~~i~~~~q~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-------~~~~~~~~~~~~LS~G~~qr 153 (249)
T PRK14253 81 LRIKVGMVFQKPNPFPMSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWD-------EVKDRLKSHAFGLSGGQQQR 153 (249)
T ss_pred HHhheeEEecCCCcCcccHHHHHHhHHHhcCCCchHHHHHHHHHHHHHcCCch-------hhhHHhhcCcccCCHHHHHH
Confidence 78899999999999999999999876321 11 1 22333344443322 22234456667899999999
Q ss_pred HHHHHhcccCCCeeEEeCcccCCCHHHHHHHHHHHHHHcCCCeEEEEccCcccccc-CCEEEEEeCCEEEEecCchhhhh
Q 001411 352 IAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRD-VDTIMVLKNGQVVESGTHVDLIS 430 (1082)
Q Consensus 352 i~lARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~ 430 (1082)
++|||||+.+|+++||||||++||+.+...+.+.|+++.+++|+|++||+++.+.. ||++++|++|++++.|+++++..
T Consensus 154 v~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 233 (249)
T PRK14253 154 LCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKKNYTIVIVTHSMQQARRISDRTAFFLMGELVEHDDTQVIFS 233 (249)
T ss_pred HHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHHc
Confidence 99999999999999999999999999999999999998777899999999999775 89999999999999999887754
|
|
| >PRK14271 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-40 Score=362.58 Aligned_cols=220 Identities=28% Similarity=0.492 Sum_probs=184.1
Q ss_pred cEEEEEEEEECCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHHhCCCC-----CCcEEEECCeeCCCCC-HHH
Q 001411 205 QIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEP-----TSGKILLDGHDLKSLQ-LKW 278 (1082)
Q Consensus 205 ~i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~-----~~G~i~~~g~~~~~~~-~~~ 278 (1082)
.++++|++++|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.++|.++...+ ...
T Consensus 21 ~l~i~nl~~~~~~--~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~ 98 (276)
T PRK14271 21 AMAAVNLTLGFAG--KTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDVLE 98 (276)
T ss_pred EEEEeeEEEEECC--EEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccchhHH
Confidence 5899999999974 3599999999999999999999999999999999999986 7999999999987653 456
Q ss_pred HhhhceEEccCCCcChhcHHHHHhcCCCC---CCHHHHHHHHHHhchHHHHh--cCCCCccccccCCCCCCChHHHHHHH
Q 001411 279 LREQMGLVSQEPALFATSIANNILLGKED---ASMDRVIEAAKAANAHSFVE--GLPDGYQTQVGEGGTQLSGGQKQRIA 353 (1082)
Q Consensus 279 ~~~~i~~v~Q~~~l~~~ti~~ni~~g~~~---~~~~~~~~~~~~~~~~~~i~--~lp~g~~t~~g~~g~~LSgGqkqri~ 353 (1082)
+++.++|++|++.+|+.|++||+.++... .+.++..+.+. +.++ .++..+.+.+...+.+||||||||++
T Consensus 99 ~~~~i~~v~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~-----~~l~~~~l~~~~~~~l~~~~~~LSgGq~qrl~ 173 (276)
T PRK14271 99 FRRRVGMLFQRPNPFPMSIMDNVLAGVRAHKLVPRKEFRGVAQ-----ARLTEVGLWDAVKDRLSDSPFRLSGGQQQLLC 173 (276)
T ss_pred HhhheEEeccCCccCCccHHHHHHHHHHhccCCCHHHHHHHHH-----HHHHHcCCCchhhhHhhCCcccCCHHHHHHHH
Confidence 78899999999999999999999876321 12323222111 1122 22222234456677899999999999
Q ss_pred HHHhcccCCCeeEEeCcccCCCHHHHHHHHHHHHHHcCCCeEEEEccCcccccc-CCEEEEEeCCEEEEecCchhhhhc
Q 001411 354 IARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRD-VDTIMVLKNGQVVESGTHVDLISK 431 (1082)
Q Consensus 354 lARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 431 (1082)
|||||+.+|+++||||||++||+.+.+.+.+.|.++.+++|+|+|||+++.+.. ||++++|++|++++.|+++++.+.
T Consensus 174 LAral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~ 252 (276)
T PRK14271 174 LARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLADRLTVIIVTHNLAQAARISDRAALFFDGRLVEEGPTEQLFSS 252 (276)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhC
Confidence 999999999999999999999999999999999988667899999999998764 899999999999999999998764
|
|
| >TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-40 Score=375.42 Aligned_cols=200 Identities=28% Similarity=0.447 Sum_probs=169.6
Q ss_pred ccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHHhCCCCCCcEEEECCe----eCCCCCHHHH---h-hhceEEccCCCc
Q 001411 221 MVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGH----DLKSLQLKWL---R-EQMGLVSQEPAL 292 (1082)
Q Consensus 221 ~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~----~~~~~~~~~~---~-~~i~~v~Q~~~l 292 (1082)
.+|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|. ++...+...+ | ++|+||+|++.+
T Consensus 38 ~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vfQ~~~l 117 (382)
T TIGR03415 38 VGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMVFQKFAL 117 (382)
T ss_pred EEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEecccccccCCHHHHHHHhcCCEEEEECCCcC
Confidence 3899999999999999999999999999999999999999999999996 5655655443 3 579999999999
Q ss_pred Ch-hcHHHHHhcCCCC--CC----HHHHHHHHHHhchHHHHhcCCCCccccccCCCCCCChHHHHHHHHHHhcccCCCee
Q 001411 293 FA-TSIANNILLGKED--AS----MDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKIL 365 (1082)
Q Consensus 293 ~~-~ti~~ni~~g~~~--~~----~~~~~~~~~~~~~~~~i~~lp~g~~t~~g~~g~~LSgGqkqri~lARal~~~~~il 365 (1082)
|+ .|++||+.++... .+ .+++.++++..++.++ ......+||||||||++|||||+.+|+||
T Consensus 118 ~p~~Tv~eNi~~~~~~~g~~~~~~~~~a~e~le~vgL~~~-----------~~~~~~~LSgGq~QRV~LARALa~~P~IL 186 (382)
T TIGR03415 118 MPWLTVEENVAFGLEMQGMPEAERRKRVDEQLELVGLAQW-----------ADKKPGELSGGMQQRVGLARAFAMDADIL 186 (382)
T ss_pred CCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchh-----------hcCChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 98 5999999987421 11 1234445555544333 33444589999999999999999999999
Q ss_pred EEeCcccCCCHHHHHHHHHHHHHHcC--CCeEEEEccCcccc-ccCCEEEEEeCCEEEEecCchhhhhc
Q 001411 366 LLDEATSALDAESELIVQRALEKIMS--NRTTIVVAHRLSTV-RDVDTIMVLKNGQVVESGTHVDLISK 431 (1082)
Q Consensus 366 llDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~vtH~~~~~-~~~d~i~~l~~G~i~~~g~~~~l~~~ 431 (1082)
|||||||+||+.+.+.+++.|.++.+ ++|+|+|||+++.+ +.||+|++|++|++++.|++++++.+
T Consensus 187 LlDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~e~~~l~DrI~vl~~G~iv~~g~~~ei~~~ 255 (382)
T TIGR03415 187 LMDEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDLDEALKIGNRIAIMEGGRIIQHGTPEEIVLN 255 (382)
T ss_pred EEECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHhhC
Confidence 99999999999999999999998753 78999999999987 55999999999999999999999865
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines. |
| >PRK14256 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-40 Score=360.67 Aligned_cols=219 Identities=28% Similarity=0.490 Sum_probs=182.5
Q ss_pred CcEEEEEEEEECCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHHhCCC--C---CCcEEEECCeeCCCC--CH
Q 001411 204 GQIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYE--P---TSGKILLDGHDLKSL--QL 276 (1082)
Q Consensus 204 ~~i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~--~---~~G~i~~~g~~~~~~--~~ 276 (1082)
+.|+++|++++|++ ..+|+|+||+|++||+++|+|+||||||||+++|+|+++ | ++|+|.++|+++... +.
T Consensus 3 ~~l~~~nl~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~ 80 (252)
T PRK14256 3 NKVKLEQLNVHFGK--NHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVDP 80 (252)
T ss_pred cEEEEEEEEEEeCC--eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccCCh
Confidence 46999999999974 349999999999999999999999999999999999986 4 699999999998643 34
Q ss_pred HHHhhhceEEccCCCcChh-cHHHHHhcCCCC---CCH----HHHHHHHHHhchHHHHhcCCCCccccccCCCCCCChHH
Q 001411 277 KWLREQMGLVSQEPALFAT-SIANNILLGKED---ASM----DRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQ 348 (1082)
Q Consensus 277 ~~~~~~i~~v~Q~~~l~~~-ti~~ni~~g~~~---~~~----~~~~~~~~~~~~~~~i~~lp~g~~t~~g~~g~~LSgGq 348 (1082)
..+++.++|++|++.+|+. |++||+.++... .+. +++.++++..++.+.+ ....+..+.+|||||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LS~G~ 153 (252)
T PRK14256 81 VSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEV-------KDRLKSNAMELSGGQ 153 (252)
T ss_pred HHhhccEEEEecCCCCCCcCcHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhh-------hHHhhCCcCcCCHHH
Confidence 5678889999999999884 999999865211 111 2233444444432222 123345667899999
Q ss_pred HHHHHHHHhcccCCCeeEEeCcccCCCHHHHHHHHHHHHHHcCCCeEEEEccCccccc-cCCEEEEEeCCEEEEecCchh
Q 001411 349 KQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVR-DVDTIMVLKNGQVVESGTHVD 427 (1082)
Q Consensus 349 kqri~lARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~vtH~~~~~~-~~d~i~~l~~G~i~~~g~~~~ 427 (1082)
|||++||||++.+|+++||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+. .||++++|++|++++.|++++
T Consensus 154 ~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~ 233 (252)
T PRK14256 154 QQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKEKYTIIIVTHNMQQAARVSDYTAFFYMGDLVECGETKK 233 (252)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCcEEEEECCHHHHHhhCCEEEEEECCEEEEeCCHHH
Confidence 9999999999999999999999999999999999999999877789999999999985 599999999999999999988
Q ss_pred hhhc
Q 001411 428 LISK 431 (1082)
Q Consensus 428 l~~~ 431 (1082)
+...
T Consensus 234 ~~~~ 237 (252)
T PRK14256 234 IFTT 237 (252)
T ss_pred HHhC
Confidence 8654
|
|
| >COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-41 Score=327.93 Aligned_cols=219 Identities=27% Similarity=0.453 Sum_probs=181.9
Q ss_pred EEEEEEEEECCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHHhCCCCCCcEEEECCeeCCCCCHHHHhhhceE
Q 001411 206 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGL 285 (1082)
Q Consensus 206 i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 285 (1082)
+++.+++++|+. ...+++|+||+++.||+++|.|||||||||+|++|.+++.|++|.|++||.|... ++...|++||+
T Consensus 2 l~v~~l~K~y~~-~v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~~~-~p~~vrr~IGV 79 (245)
T COG4555 2 LEVTDLTKSYGS-KVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVR-DPSFVRRKIGV 79 (245)
T ss_pred eeeeehhhhccC-HHhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCCCceEEEeeccccc-ChHHHhhhcce
Confidence 678999999975 3349999999999999999999999999999999999999999999999998754 46678899999
Q ss_pred EccCCCcChh-cHHHHHhcCCCCCCHHHHHHHHHHhchHHHHhcCCCCccccccCCCCCCChHHHHHHHHHHhcccCCCe
Q 001411 286 VSQEPALFAT-SIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKI 364 (1082)
Q Consensus 286 v~Q~~~l~~~-ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~lp~g~~t~~g~~g~~LSgGqkqri~lARal~~~~~i 364 (1082)
++-+.-|+.. |++|||.|...-....+..-.++.+.+ .+.| +++..+..+..++|-|+||||+|||||.+||++
T Consensus 80 l~~e~glY~RlT~rEnl~~Fa~L~~l~~~~~kari~~l---~k~l--~l~~~~~rRv~~~S~G~kqkV~iARAlvh~P~i 154 (245)
T COG4555 80 LFGERGLYARLTARENLKYFARLNGLSRKEIKARIAEL---SKRL--QLLEYLDRRVGEFSTGMKQKVAIARALVHDPSI 154 (245)
T ss_pred ecCCcChhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHH---HHHh--ChHHHHHHHHhhhchhhHHHHHHHHHHhcCCCe
Confidence 9987777766 999999875321111111112222222 2222 333344445568999999999999999999999
Q ss_pred eEEeCcccCCCHHHHHHHHHHHHHHcC-CCeEEEEccCccccc-cCCEEEEEeCCEEEEecCchhhhhc
Q 001411 365 LLLDEATSALDAESELIVQRALEKIMS-NRTTIVVAHRLSTVR-DVDTIMVLKNGQVVESGTHVDLISK 431 (1082)
Q Consensus 365 lllDEpts~LD~~~~~~i~~~l~~~~~-~~t~i~vtH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~~ 431 (1082)
++||||||+||..+.+.+.+.+.+++. +++||+.||.++.++ -||+|+++.+|+++..|+.+++.++
T Consensus 155 ~vlDEP~sGLDi~~~r~~~dfi~q~k~egr~viFSSH~m~EvealCDrvivlh~Gevv~~gs~~~l~~r 223 (245)
T COG4555 155 LVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFSSHIMQEVEALCDRVIVLHKGEVVLEGSIEALDAR 223 (245)
T ss_pred EEEcCCCCCccHHHHHHHHHHHHHhhcCCcEEEEecccHHHHHHhhheEEEEecCcEEEcCCHHHHHHH
Confidence 999999999999999999999999876 899999999999998 5999999999999999999988765
|
|
| >TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-40 Score=361.33 Aligned_cols=212 Identities=27% Similarity=0.473 Sum_probs=181.1
Q ss_pred EEEEEEEEECCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHHhCCCCCCcEEEECCeeCCCCCHHHHhhhceE
Q 001411 206 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGL 285 (1082)
Q Consensus 206 i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 285 (1082)
++++|+++.|++. .+|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.++...+...+++.++|
T Consensus 2 l~~~~l~~~~~~~--~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 79 (256)
T TIGR03873 2 LRLSRVSWSAGGR--LIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARARRVAL 79 (256)
T ss_pred ceEEeEEEEECCE--EEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEEcccCCHHHHhhheEE
Confidence 6899999999753 49999999999999999999999999999999999999999999999999988887778888999
Q ss_pred EccCCCc-ChhcHHHHHhcCCCCC-------C---HHHHHHHHHHhchHHHHhcCCCCccccccCCCCCCChHHHHHHHH
Q 001411 286 VSQEPAL-FATSIANNILLGKEDA-------S---MDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAI 354 (1082)
Q Consensus 286 v~Q~~~l-~~~ti~~ni~~g~~~~-------~---~~~~~~~~~~~~~~~~i~~lp~g~~t~~g~~g~~LSgGqkqri~l 354 (1082)
++|++.+ +..|++||+.++.... . .+++.++++..++ ..........||||||||++|
T Consensus 80 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l-----------~~~~~~~~~~LS~G~~qrl~l 148 (256)
T TIGR03873 80 VEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTEL-----------SHLADRDMSTLSGGERQRVHV 148 (256)
T ss_pred ecccCccCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCc-----------HhhhcCCcccCCHHHHHHHHH
Confidence 9999864 4569999998763210 0 1123333333333 333445567899999999999
Q ss_pred HHhcccCCCeeEEeCcccCCCHHHHHHHHHHHHHHcC-CCeEEEEccCccccc-cCCEEEEEeCCEEEEecCchhhhh
Q 001411 355 ARAVLRNPKILLLDEATSALDAESELIVQRALEKIMS-NRTTIVVAHRLSTVR-DVDTIMVLKNGQVVESGTHVDLIS 430 (1082)
Q Consensus 355 ARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~-~~t~i~vtH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~ 430 (1082)
|||++.+|+++||||||++||+.+...+.+.|.++.+ +.|+|++||+++.+. .||+|++|++|++++.|+++++..
T Consensus 149 a~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 226 (256)
T TIGR03873 149 ARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAATGVTVVAALHDLNLAASYCDHVVVLDGGRVVAAGPPREVLT 226 (256)
T ss_pred HHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCEEEecCHHHhhC
Confidence 9999999999999999999999999999999998754 689999999999985 599999999999999999988764
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. |
| >PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-40 Score=362.02 Aligned_cols=229 Identities=28% Similarity=0.454 Sum_probs=187.7
Q ss_pred EEEEeEEEECCCC------CCcccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCccCCCCCH--
Q 001411 835 IELRNVSFKYPVR------PDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNL-- 906 (1082)
Q Consensus 835 I~~~~Vs~~Y~~~------~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~-- 906 (1082)
|+++||+++|+.. .+.++|+|+||+|++||+++|+|+||||||||+++|.|+++|++|+|.+||.++..++.
T Consensus 4 l~~~nl~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~sG~i~~~g~~~~~~~~~~ 83 (268)
T PRK10419 4 LNVSGLSHHYAHGGLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNRAQ 83 (268)
T ss_pred EEEeceEEEecCCccccccCceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccChhH
Confidence 8999999999631 03579999999999999999999999999999999999999999999999999988765
Q ss_pred -HHHhcceEEEcccCc--cc-cccHHHHhccCCC---CCCHHHHHHHHHHhcHHHHHhhCcccccc-cccCCCCCCChhH
Q 001411 907 -RSLRRKIGLVQQEPA--LF-STTIYENIKYGNE---DASEIELMKATKAANAHGFISRMPEGYQS-HVGDRGVQLSGGQ 978 (1082)
Q Consensus 907 -~~lR~~i~~VpQdp~--Lf-~gTIreNl~~~~~---~~~d~ei~~al~~a~l~~~i~~lp~gldt-~v~e~G~~LSgGQ 978 (1082)
..+|+.++|+||++. ++ ..|+++|+.+... ..+. ......+.+.+..+ |+++ ........|||||
T Consensus 84 ~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~~~~~~~-----~~~~~~~~~~l~~~--gl~~~~~~~~~~~LS~Ge 156 (268)
T PRK10419 84 RKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHLLSLDK-----AERLARASEMLRAV--DLDDSVLDKRPPQLSGGQ 156 (268)
T ss_pred HHHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHhhccCCH-----HHHHHHHHHHHHHc--CCChhHhhCCCccCChHH
Confidence 357889999999983 44 4699999864211 1111 11122334444444 5553 3455677899999
Q ss_pred HHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHhcC--CceEEEEecCchhhhc-cCEEEEEeCCEEEEecCh
Q 001411 979 KQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLME--GRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGSH 1055 (1082)
Q Consensus 979 rQrlaLARAlL~~~~ILlLDEaTS~LD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~G~~ 1055 (1082)
|||++|||||+++|+||||||||++||+++.+.+.+.|++..+ ++|+|++||+++.+.. ||+|++|++|++++.|++
T Consensus 157 ~qrl~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~~g~~ 236 (268)
T PRK10419 157 LQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLRLVERFCQRVMVMDNGQIVETQPV 236 (268)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEECCHHHHHHhCCEEEEEECCEEeeeCCh
Confidence 9999999999999999999999999999999999999998753 7899999999999975 999999999999999999
Q ss_pred HHHhhhccchHHHHHH
Q 001411 1056 EQLLRKENGIYKQLIR 1071 (1082)
Q Consensus 1056 ~eLl~~~~g~f~~l~~ 1071 (1082)
+++.. .++.|..-+.
T Consensus 237 ~~~~~-~~~~~~~~~~ 251 (268)
T PRK10419 237 GDKLT-FSSPAGRVLQ 251 (268)
T ss_pred hhccC-CCCHHHHHHH
Confidence 99986 4555554443
|
|
| >PRK10908 cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-40 Score=353.11 Aligned_cols=204 Identities=30% Similarity=0.492 Sum_probs=170.4
Q ss_pred EEEEEEEEECCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHHhCCCCCCcEEEECCeeCCCCCHH---HHhhh
Q 001411 206 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLK---WLREQ 282 (1082)
Q Consensus 206 i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~---~~~~~ 282 (1082)
++++|++++|++. ..+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+.. .+++.
T Consensus 2 l~~~~l~~~~~~~-~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~ 80 (222)
T PRK10908 2 IRFEHVSKAYLGG-RQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLRRQ 80 (222)
T ss_pred EEEEeeEEEecCC-CeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCChhHHHHHHhh
Confidence 6899999999432 3599999999999999999999999999999999999999999999999998776543 36788
Q ss_pred ceEEccCCCcC-hhcHHHHHhcCCC--CCCHH----HHHHHHHHhchHHHHhcCCCCccccccCCCCCCChHHHHHHHHH
Q 001411 283 MGLVSQEPALF-ATSIANNILLGKE--DASMD----RVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIA 355 (1082)
Q Consensus 283 i~~v~Q~~~l~-~~ti~~ni~~g~~--~~~~~----~~~~~~~~~~~~~~i~~lp~g~~t~~g~~g~~LSgGqkqri~lA 355 (1082)
++|++|++.++ +.|++||+.++.. ..+.+ ++.++++..++.+ .......+||||||||++||
T Consensus 81 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LS~G~~qrv~la 149 (222)
T PRK10908 81 IGMIFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLD-----------KAKNFPIQLSGGEQQRVGIA 149 (222)
T ss_pred eEEEecCccccccccHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCChh-----------hhhCCchhCCHHHHHHHHHH
Confidence 99999999875 5699999987531 11222 2333334333333 23344568999999999999
Q ss_pred HhcccCCCeeEEeCcccCCCHHHHHHHHHHHHHHc-CCCeEEEEccCcccccc-CCEEEEEeCCEEEE
Q 001411 356 RAVLRNPKILLLDEATSALDAESELIVQRALEKIM-SNRTTIVVAHRLSTVRD-VDTIMVLKNGQVVE 421 (1082)
Q Consensus 356 Ral~~~~~illlDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~ 421 (1082)
||++.+|+++||||||++||+.+.+.+.+.|.++. ++.|+|++||+++.+.. ||+|++|++|+++.
T Consensus 150 ral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~ 217 (222)
T PRK10908 150 RAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDIGLISRRSYRMLTLSDGHLHG 217 (222)
T ss_pred HHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEcc
Confidence 99999999999999999999999999999999874 46899999999999876 89999999999863
|
|
| >PRK14244 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-40 Score=363.10 Aligned_cols=217 Identities=29% Similarity=0.501 Sum_probs=180.1
Q ss_pred EEEEEEEEECCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHHhCCC-----CCCcEEEECCeeCCCCC--HHH
Q 001411 206 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYE-----PTSGKILLDGHDLKSLQ--LKW 278 (1082)
Q Consensus 206 i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~-----~~~G~i~~~g~~~~~~~--~~~ 278 (1082)
-+++|++|+|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|+++...+ ...
T Consensus 6 ~~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~ 83 (251)
T PRK14244 6 ASVKNLNLWYGS--KQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVVL 83 (251)
T ss_pred EEeeeEEEEECC--eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccchHH
Confidence 478999999974 349999999999999999999999999999999999986 47999999999886543 335
Q ss_pred HhhhceEEccCCCcChhcHHHHHhcCCC--CC--C----HHHHHHHHHHhchHHHHhcCCCCccccccCCCCCCChHHHH
Q 001411 279 LREQMGLVSQEPALFATSIANNILLGKE--DA--S----MDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQ 350 (1082)
Q Consensus 279 ~~~~i~~v~Q~~~l~~~ti~~ni~~g~~--~~--~----~~~~~~~~~~~~~~~~i~~lp~g~~t~~g~~g~~LSgGqkq 350 (1082)
+++.++|++|++.+|+.|++||+.++.. .. . .+++.++++..++.+. +.+.++..+.+|||||||
T Consensus 84 ~~~~i~~v~q~~~~~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-------~~~~~~~~~~~LS~Gq~q 156 (251)
T PRK14244 84 LRAKVGMVFQKPNPFPKSIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEE-------LGDRLKDSAFELSGGQQQ 156 (251)
T ss_pred HhhhEEEEecCcccccCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCch-------hhhHhhcChhhCCHHHHH
Confidence 6788999999999999999999987521 11 1 1223333343333221 122345667789999999
Q ss_pred HHHHHHhcccCCCeeEEeCcccCCCHHHHHHHHHHHHHHcCCCeEEEEccCcccccc-CCEEEEEeCCEEEEecCchhhh
Q 001411 351 RIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRD-VDTIMVLKNGQVVESGTHVDLI 429 (1082)
Q Consensus 351 ri~lARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~ 429 (1082)
|++|||||+++|+++||||||++||+.+.+.+.+.|.++.+++|+|++||+++.+.. ||+|++|++|++++.|+++++.
T Consensus 157 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 236 (251)
T PRK14244 157 RLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELKKNFTIIVVTHSMKQAKKVSDRVAFFQSGRIVEYNTTQEIF 236 (251)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhcCEEEEEECCEEEEeCCHHHHh
Confidence 999999999999999999999999999999999999988778999999999999865 8999999999999999988876
Q ss_pred hc
Q 001411 430 SK 431 (1082)
Q Consensus 430 ~~ 431 (1082)
..
T Consensus 237 ~~ 238 (251)
T PRK14244 237 KN 238 (251)
T ss_pred cC
Confidence 53
|
|
| >PRK14238 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-40 Score=363.97 Aligned_cols=218 Identities=30% Similarity=0.475 Sum_probs=182.4
Q ss_pred cEEEEEEEEECCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHHhCCC-----CCCcEEEECCeeCCC--CCHH
Q 001411 205 QIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYE-----PTSGKILLDGHDLKS--LQLK 277 (1082)
Q Consensus 205 ~i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~-----~~~G~i~~~g~~~~~--~~~~ 277 (1082)
.++++|++++|++. .+|+|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|+++.. .+..
T Consensus 24 ~l~~~~l~~~~~~~--~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 101 (271)
T PRK14238 24 VFDTQNLNLWYGED--HALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYSVE 101 (271)
T ss_pred EEEEeeeEEEECCc--ceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEcccccccHH
Confidence 59999999999743 49999999999999999999999999999999999987 699999999999853 3455
Q ss_pred HHhhhceEEccCCCcChhcHHHHHhcCCC--CCCHH-H----HHHHHHHhchHHHHhcCCCCccccccCCCCCCChHHHH
Q 001411 278 WLREQMGLVSQEPALFATSIANNILLGKE--DASMD-R----VIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQ 350 (1082)
Q Consensus 278 ~~~~~i~~v~Q~~~l~~~ti~~ni~~g~~--~~~~~-~----~~~~~~~~~~~~~i~~lp~g~~t~~g~~g~~LSgGqkq 350 (1082)
.+++.++|++|++.+|..|++||+.++.. ....+ . +.++++..++ .+++.......+.+|||||||
T Consensus 102 ~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~~l~~~~~~~~~~LSgGe~q 174 (271)
T PRK14238 102 ELRTNVGMVFQKPNPFPKSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAI-------WDELKDRLHDNAYGLSGGQQQ 174 (271)
T ss_pred HHhhhEEEEecCCccccccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCC-------cchHHHHHhcCcccCCHHHHH
Confidence 67888999999999998999999987532 11111 1 1222222211 113333456677899999999
Q ss_pred HHHHHHhcccCCCeeEEeCcccCCCHHHHHHHHHHHHHHcCCCeEEEEccCcccccc-CCEEEEEeCCEEEEecCchhhh
Q 001411 351 RIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRD-VDTIMVLKNGQVVESGTHVDLI 429 (1082)
Q Consensus 351 ri~lARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~ 429 (1082)
|++|||||+.+|+++||||||++||+.+.+.+.+.|.++.+++|+|++||+++.+.. ||++++|++|++++.|+++++.
T Consensus 175 rv~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~~g~~~~~~ 254 (271)
T PRK14238 175 RLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKKDYSIIIVTHNMQQAARISDKTAFFLNGYVNEYDDTDKIF 254 (271)
T ss_pred HHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHcCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999999999999999999988777999999999999764 8999999999999999998886
Q ss_pred hc
Q 001411 430 SK 431 (1082)
Q Consensus 430 ~~ 431 (1082)
..
T Consensus 255 ~~ 256 (271)
T PRK14238 255 SN 256 (271)
T ss_pred cC
Confidence 54
|
|
| >COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-40 Score=345.81 Aligned_cols=224 Identities=35% Similarity=0.595 Sum_probs=194.7
Q ss_pred cEEEEeEEEECCCCCCc---------------------ccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCcc
Q 001411 834 NIELRNVSFKYPVRPDI---------------------TIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISG 892 (1082)
Q Consensus 834 ~I~~~~Vs~~Y~~~~~~---------------------~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G 892 (1082)
.|+++||+.-|..++.. --++|+||+|+.||+.-|.|-||||||||++++.|+++|++|
T Consensus 4 ~i~i~nv~kiFG~~~~~a~~~~~~G~~k~ei~~~tg~vvGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiept~G 83 (386)
T COG4175 4 KIEIKNVYKIFGKNPKRALKLLDQGKSKAEILKKTGLVVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRG 83 (386)
T ss_pred eEEeecceeecccCHHHHHHHHHcCCcHHHHHHhhCcEEeeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCCCCCc
Confidence 48889998877643221 137999999999999999999999999999999999999999
Q ss_pred EEEECCccCCCCCHHHHh----cceEEEcccCcccc-ccHHHHhccCCC--CCC----HHHHHHHHHHhcHHHHHhhCcc
Q 001411 893 TVLIDGYDIRTLNLRSLR----RKIGLVQQEPALFS-TTIYENIKYGNE--DAS----EIELMKATKAANAHGFISRMPE 961 (1082)
Q Consensus 893 ~I~idG~di~~i~~~~lR----~~i~~VpQdp~Lf~-gTIreNl~~~~~--~~~----d~ei~~al~~a~l~~~i~~lp~ 961 (1082)
+|++||.||..++.++|| +++++|+|.--||+ -||.+|..||.. ..+ .+...++++.+|+.+|-.+.|
T Consensus 84 ~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhrtVl~Nv~fGLev~Gv~~~er~~~a~~~l~~VgL~~~~~~yp- 162 (386)
T COG4175 84 EILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHRTVLENVAFGLEVQGVPKAEREERALEALELVGLEGYADKYP- 162 (386)
T ss_pred eEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccchhHhhhhhcceeecCCCHHHHHHHHHHHHHHcCchhhhhcCc-
Confidence 999999999999987764 57999999999997 599999999853 222 234567788999988877766
Q ss_pred cccccccCCCCCCChhHHHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHhcC--CceEEEEecCchhh-hcc
Q 001411 962 GYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLME--GRTTIMVAHRLSTI-RNA 1038 (1082)
Q Consensus 962 gldt~v~e~G~~LSgGQrQrlaLARAlL~~~~ILlLDEaTS~LD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti-~~~ 1038 (1082)
.+||||+|||+.|||||..+|+||+||||.|+|||--...+|+-|.++.+ .+|+++|||+|++. +-.
T Consensus 163 ----------~eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR~~mQdeLl~Lq~~l~KTIvFitHDLdEAlriG 232 (386)
T COG4175 163 ----------NELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQAKLKKTIVFITHDLDEALRIG 232 (386)
T ss_pred ----------ccccchHHHHHHHHHHHccCCCEEEecCchhhcChHHHHHHHHHHHHHHHHhCCeEEEEecCHHHHHhcc
Confidence 57999999999999999999999999999999999999999999987653 78999999999997 459
Q ss_pred CEEEEEeCCEEEEecChHHHhhhccchHHH
Q 001411 1039 DKIAVLQQGKVAEIGSHEQLLRKENGIYKQ 1068 (1082)
Q Consensus 1039 DrI~Vl~~G~ive~G~~~eLl~~~~g~f~~ 1068 (1082)
|||..|++|+|+..|||+|++.++..-|-+
T Consensus 233 ~rIaimkdG~ivQ~Gtp~eIl~~PAndYV~ 262 (386)
T COG4175 233 DRIAIMKDGEIVQVGTPEEILLNPANDYVR 262 (386)
T ss_pred ceEEEecCCeEEEeCCHHHHHcCccHHHHH
Confidence 999999999999999999999877655543
|
|
| >cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-40 Score=350.27 Aligned_cols=201 Identities=27% Similarity=0.502 Sum_probs=170.9
Q ss_pred EEEEEEEEECCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHHhCCCCCCcEEEECCeeCCCCCHHHHhhhceE
Q 001411 206 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGL 285 (1082)
Q Consensus 206 i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 285 (1082)
|+++|++++|++. . .|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. .++.++|
T Consensus 1 i~~~~l~~~~~~~---~-~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~--~~~~i~~ 74 (211)
T cd03298 1 VRLDKIRFSYGEQ---P-MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPP--ADRPVSM 74 (211)
T ss_pred CEEEeEEEEeCCE---e-cceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCcCCH--hHccEEE
Confidence 4789999999742 1 39999999999999999999999999999999999999999999999876554 3567999
Q ss_pred EccCCCcChh-cHHHHHhcCCCC------CCHHHHHHHHHHhchHHHHhcCCCCccccccCCCCCCChHHHHHHHHHHhc
Q 001411 286 VSQEPALFAT-SIANNILLGKED------ASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAV 358 (1082)
Q Consensus 286 v~Q~~~l~~~-ti~~ni~~g~~~------~~~~~~~~~~~~~~~~~~i~~lp~g~~t~~g~~g~~LSgGqkqri~lARal 358 (1082)
++|++.+|+. |++||+.++... ...+++.++++..++.+...+. ..+||||||||++||||+
T Consensus 75 ~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LS~G~~qrv~ia~al 143 (211)
T cd03298 75 LFQENNLFAHLTVEQNVGLGLSPGLKLTAEDRQAIEVALARVGLAGLEKRL-----------PGELSGGERQRVALARVL 143 (211)
T ss_pred EecccccCCCCcHHHHHhcccccccCccHHHHHHHHHHHHHcCCHHHHhCC-----------cccCCHHHHHHHHHHHHH
Confidence 9999999976 999999876421 1123455566666655544443 358999999999999999
Q ss_pred ccCCCeeEEeCcccCCCHHHHHHHHHHHHHHc--CCCeEEEEccCcccccc-CCEEEEEeCCEEEEec
Q 001411 359 LRNPKILLLDEATSALDAESELIVQRALEKIM--SNRTTIVVAHRLSTVRD-VDTIMVLKNGQVVESG 423 (1082)
Q Consensus 359 ~~~~~illlDEpts~LD~~~~~~i~~~l~~~~--~~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~g 423 (1082)
+.+|+++||||||++||++++..+.+.|+++. .++|+|++||+++.+.. ||++++|++|++++.|
T Consensus 144 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~ 211 (211)
T cd03298 144 VRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQPEDAKRLAQRVVFLDNGRIAAQG 211 (211)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhhhCEEEEEECCEEeecC
Confidence 99999999999999999999999999999875 37899999999999865 8999999999998654
|
Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14270 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-40 Score=360.43 Aligned_cols=218 Identities=28% Similarity=0.457 Sum_probs=183.1
Q ss_pred cEEEEEEEEECCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHHhCCCC-----CCcEEEECCeeCCCC--CHH
Q 001411 205 QIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEP-----TSGKILLDGHDLKSL--QLK 277 (1082)
Q Consensus 205 ~i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~-----~~G~i~~~g~~~~~~--~~~ 277 (1082)
.++++|+++.|++ ..+|+|+||++++||+++|+|+||||||||+++|+|+++| ++|+|.++|.++... +..
T Consensus 4 ~l~~~~l~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 81 (251)
T PRK14270 4 KMESKNLNLWYGE--KQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDVV 81 (251)
T ss_pred EEEEEEeEEEECC--eeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccccHH
Confidence 5899999999974 3499999999999999999999999999999999999875 799999999998643 345
Q ss_pred HHhhhceEEccCCCcChhcHHHHHhcCCCCC---CH----HHHHHHHHHhchHHHHhcCCCCccccccCCCCCCChHHHH
Q 001411 278 WLREQMGLVSQEPALFATSIANNILLGKEDA---SM----DRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQ 350 (1082)
Q Consensus 278 ~~~~~i~~v~Q~~~l~~~ti~~ni~~g~~~~---~~----~~~~~~~~~~~~~~~i~~lp~g~~t~~g~~g~~LSgGqkq 350 (1082)
.+++.++|++|++.+|+.|++||+.++.... +. +++.++++..++.+ ++..........|||||||
T Consensus 82 ~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~~~~~~~~~~LS~G~~q 154 (251)
T PRK14270 82 ELRKRVGMVFQKPNPFPMSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWD-------EVKDDLKKSALKLSGGQQQ 154 (251)
T ss_pred HHHhheEEEecCCCcCCCcHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCch-------hhhhHhhCCcccCCHHHHH
Confidence 6678899999999999999999998753211 11 22334444444322 2222345566789999999
Q ss_pred HHHHHHhcccCCCeeEEeCcccCCCHHHHHHHHHHHHHHcCCCeEEEEccCcccccc-CCEEEEEeCCEEEEecCchhhh
Q 001411 351 RIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRD-VDTIMVLKNGQVVESGTHVDLI 429 (1082)
Q Consensus 351 ri~lARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~ 429 (1082)
|++||||++.+|+++||||||++||+.+...+.+.|+++.+++|+|++||+++.+.. ||++++|++|++++.|+++++.
T Consensus 155 rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 234 (251)
T PRK14270 155 RLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKKEYTIVIVTHNMQQASRVSDYTAFFLMGDLIEFNKTEKIF 234 (251)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEEcCHHHHHHhcCEEEEEECCeEEEeCCHHHHh
Confidence 999999999999999999999999999999999999988767899999999998765 8999999999999999999886
Q ss_pred hc
Q 001411 430 SK 431 (1082)
Q Consensus 430 ~~ 431 (1082)
..
T Consensus 235 ~~ 236 (251)
T PRK14270 235 LE 236 (251)
T ss_pred cC
Confidence 54
|
|
| >PRK14261 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-40 Score=361.20 Aligned_cols=218 Identities=27% Similarity=0.442 Sum_probs=183.4
Q ss_pred cEEEEEEEEECCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHHhCCCC-----CCcEEEECCeeCCCC--CHH
Q 001411 205 QIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEP-----TSGKILLDGHDLKSL--QLK 277 (1082)
Q Consensus 205 ~i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~-----~~G~i~~~g~~~~~~--~~~ 277 (1082)
.|+++|++|+|+++ .+|+|+||++++||+++|+||||||||||+++|+|+.+| ++|+|.++|+++... +..
T Consensus 6 ~i~~~~l~~~~~~~--~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 83 (253)
T PRK14261 6 ILSTKNLNLWYGEK--HALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADVV 83 (253)
T ss_pred eEEEeeeEEEECCe--eeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccccccchh
Confidence 48999999999743 499999999999999999999999999999999999763 489999999998765 445
Q ss_pred HHhhhceEEccCCCcChhcHHHHHhcCCCCC---CH----HHHHHHHHHhchHHHHhcCCCCccccccCCCCCCChHHHH
Q 001411 278 WLREQMGLVSQEPALFATSIANNILLGKEDA---SM----DRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQ 350 (1082)
Q Consensus 278 ~~~~~i~~v~Q~~~l~~~ti~~ni~~g~~~~---~~----~~~~~~~~~~~~~~~i~~lp~g~~t~~g~~g~~LSgGqkq 350 (1082)
..++.++|++|++.+|+.|++||+.++.... .. +++.++++..++ .+++.+..+..+.+|||||||
T Consensus 84 ~~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l-------~~~l~~~~~~~~~~LS~G~~q 156 (253)
T PRK14261 84 ALRRKIGMVFQRPNPFPKSIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAAL-------WDEVKDRLHDSALSLSGGQQQ 156 (253)
T ss_pred hhhceEEEEecCCccCcccHHHHHHhhHHhcCCCCHHHHHHHHHHHHHHhcC-------chhhHHHhhcChhhCCHHHHH
Confidence 6678899999999999999999999863211 11 122333333322 223334466777899999999
Q ss_pred HHHHHHhcccCCCeeEEeCcccCCCHHHHHHHHHHHHHHcCCCeEEEEccCccccc-cCCEEEEEeCCEEEEecCchhhh
Q 001411 351 RIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVR-DVDTIMVLKNGQVVESGTHVDLI 429 (1082)
Q Consensus 351 ri~lARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~vtH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~ 429 (1082)
|++||||++.+|+++||||||++||+.+.+.+.+.|.++.+++|+|++||+++.+. .||++++|++|++++.|+++++.
T Consensus 157 rv~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~tvii~sh~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 236 (253)
T PRK14261 157 RLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKKEYTVIIVTHNMQQAARVSDYTGFMYLGKLIEFDKTTQIF 236 (253)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhhCceEEEEEcCHHHHHhhCCEEEEEECCEEEEcCCHHHHH
Confidence 99999999999999999999999999999999999998876789999999999986 58999999999999999998876
Q ss_pred hc
Q 001411 430 SK 431 (1082)
Q Consensus 430 ~~ 431 (1082)
..
T Consensus 237 ~~ 238 (253)
T PRK14261 237 EN 238 (253)
T ss_pred hC
Confidence 43
|
|
| >COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-40 Score=324.22 Aligned_cols=213 Identities=31% Similarity=0.520 Sum_probs=183.1
Q ss_pred EEEEeEEEECCCCCCcccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCccCCCCCHHHHhcceE
Q 001411 835 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRKIG 914 (1082)
Q Consensus 835 I~~~~Vs~~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR~~i~ 914 (1082)
+++++++.+|++ ...+++||||+++.||.+||.|+|||||||++++|..++.|++|.|+|||+|+.+- +...|++||
T Consensus 2 l~v~~l~K~y~~--~v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~~~~-p~~vrr~IG 78 (245)
T COG4555 2 LEVTDLTKSYGS--KVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRD-PSFVRRKIG 78 (245)
T ss_pred eeeeehhhhccC--HHhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCCCceEEEeecccccC-hHHHhhhcc
Confidence 688999999973 33489999999999999999999999999999999999999999999999999874 567899999
Q ss_pred EEcccCcccc-ccHHHHhccCCC--CCCH----HHHHHHHHHhcHHHHHhhCcccccccccCCCCCCChhHHHHHHHHHH
Q 001411 915 LVQQEPALFS-TTIYENIKYGNE--DASE----IELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARA 987 (1082)
Q Consensus 915 ~VpQdp~Lf~-gTIreNl~~~~~--~~~d----~ei~~al~~a~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlaLARA 987 (1082)
+++-+.-|+. -|.||||.|+.. +-++ .++.+.-+..++.+. +|..++ +||-|+|||++||||
T Consensus 79 Vl~~e~glY~RlT~rEnl~~Fa~L~~l~~~~~kari~~l~k~l~l~~~-------~~rRv~----~~S~G~kqkV~iARA 147 (245)
T COG4555 79 VLFGERGLYARLTARENLKYFARLNGLSRKEIKARIAELSKRLQLLEY-------LDRRVG----EFSTGMKQKVAIARA 147 (245)
T ss_pred eecCCcChhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhChHHH-------HHHHHh----hhchhhHHHHHHHHH
Confidence 9997777775 599999988532 2222 233344444455444 344554 599999999999999
Q ss_pred HccCCCEEEeeCCCCCCCHHHHHHHHHHHHHhcC-CceEEEEecCchhhh-ccCEEEEEeCCEEEEecChHHHhhh
Q 001411 988 ILKNPSILLLDEATSALDTASENLIQEALDKLME-GRTTIMVAHRLSTIR-NADKIAVLQQGKVAEIGSHEQLLRK 1061 (1082)
Q Consensus 988 lL~~~~ILlLDEaTS~LD~~te~~I~~~l~~~~~-~~TvI~IaHrl~ti~-~~DrI~Vl~~G~ive~G~~~eLl~~ 1061 (1082)
|+++|+|++||||||+||..+.+.+++-|++... +++||+-||-++.++ -||||+++.+|+++..|+++++.+.
T Consensus 148 lvh~P~i~vlDEP~sGLDi~~~r~~~dfi~q~k~egr~viFSSH~m~EvealCDrvivlh~Gevv~~gs~~~l~~r 223 (245)
T COG4555 148 LVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFSSHIMQEVEALCDRVIVLHKGEVVLEGSIEALDAR 223 (245)
T ss_pred HhcCCCeEEEcCCCCCccHHHHHHHHHHHHHhhcCCcEEEEecccHHHHHHhhheEEEEecCcEEEcCCHHHHHHH
Confidence 9999999999999999999999999999998864 999999999999998 5999999999999999999999764
|
|
| >PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-40 Score=361.06 Aligned_cols=222 Identities=24% Similarity=0.457 Sum_probs=183.4
Q ss_pred cEEEEEEEEECCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHHhCCCCCCcEEEECCeeCCCCCHHHH-hhhc
Q 001411 205 QIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWL-REQM 283 (1082)
Q Consensus 205 ~i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~-~~~i 283 (1082)
.++++|+++.|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+ +..+
T Consensus 5 ~l~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i 82 (255)
T PRK11300 5 LLSVSGLMMRFGG--LLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIARMGV 82 (255)
T ss_pred eEEEeeEEEEECC--EEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCcceEEECCEECCCCCHHHHHhcCe
Confidence 4899999999974 349999999999999999999999999999999999999999999999999987765544 4569
Q ss_pred eEEccCCCcChh-cHHHHHhcCCCCCC----------HHHH--HHHHHHhchHHHHhcCCCCccccccCCCCCCChHHHH
Q 001411 284 GLVSQEPALFAT-SIANNILLGKEDAS----------MDRV--IEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQ 350 (1082)
Q Consensus 284 ~~v~Q~~~l~~~-ti~~ni~~g~~~~~----------~~~~--~~~~~~~~~~~~i~~lp~g~~t~~g~~g~~LSgGqkq 350 (1082)
+|++|++.+|+. |++||+.++..... .... ........+.+.++.+ |++........+|||||||
T Consensus 83 ~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--gl~~~~~~~~~~LS~G~~q 160 (255)
T PRK11300 83 VRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERV--GLLEHANRQAGNLAYGQQR 160 (255)
T ss_pred EEeccCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhC--ChhhhhhCChhhCCHHHHH
Confidence 999999999986 99999997632100 0000 0000011122334444 5666667778899999999
Q ss_pred HHHHHHhcccCCCeeEEeCcccCCCHHHHHHHHHHHHHHcC--CCeEEEEccCcccccc-CCEEEEEeCCEEEEecCchh
Q 001411 351 RIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMS--NRTTIVVAHRLSTVRD-VDTIMVLKNGQVVESGTHVD 427 (1082)
Q Consensus 351 ri~lARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~ 427 (1082)
|++|||||+.+|++|||||||++||+.+.+.+.+.|.++.+ ++|+|++||+++.+.. ||++++|++|++++.|++++
T Consensus 161 rv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~ 240 (255)
T PRK11300 161 RLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMKLVMGISDRIYVVNQGTPLANGTPEE 240 (255)
T ss_pred HHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEecCCHHH
Confidence 99999999999999999999999999999999999998753 6899999999999865 89999999999999999888
Q ss_pred hhh
Q 001411 428 LIS 430 (1082)
Q Consensus 428 l~~ 430 (1082)
+..
T Consensus 241 ~~~ 243 (255)
T PRK11300 241 IRN 243 (255)
T ss_pred Hhh
Confidence 754
|
|
| >PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-40 Score=364.40 Aligned_cols=214 Identities=32% Similarity=0.550 Sum_probs=179.5
Q ss_pred EEEEEEEEECCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHHhCCCCCCcEEEECCeeCCC--CCHHHHhhhc
Q 001411 206 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKS--LQLKWLREQM 283 (1082)
Q Consensus 206 i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~--~~~~~~~~~i 283 (1082)
++++|++++|++. .++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++.. .+...+++.|
T Consensus 2 l~~~~l~~~~~~~-~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~i 80 (275)
T PRK13639 2 LETRDLKYSYPDG-TEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLEVRKTV 80 (275)
T ss_pred EEEEEEEEEeCCC-CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEECccccchHHHHHhhe
Confidence 6899999999732 349999999999999999999999999999999999999999999999999852 2345678899
Q ss_pred eEEccCC--CcChhcHHHHHhcCCCC--CCH----HHHHHHHHHhchHHHHhcCCCCccccccCCCCCCChHHHHHHHHH
Q 001411 284 GLVSQEP--ALFATSIANNILLGKED--ASM----DRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIA 355 (1082)
Q Consensus 284 ~~v~Q~~--~l~~~ti~~ni~~g~~~--~~~----~~~~~~~~~~~~~~~i~~lp~g~~t~~g~~g~~LSgGqkqri~lA 355 (1082)
+|++|++ .+++.|+.||+.++... .+. +++.++++..++. ........+||||||||++||
T Consensus 81 ~~v~q~~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~~L~-----------~~~~~~~~~LS~Gq~qrv~la 149 (275)
T PRK13639 81 GIVFQNPDDQLFAPTVEEDVAFGPLNLGLSKEEVEKRVKEALKAVGME-----------GFENKPPHHLSGGQKKRVAIA 149 (275)
T ss_pred EEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCc-----------hhhcCChhhCCHHHHHHHHHH
Confidence 9999997 57888999999875321 111 2233344444332 223344568999999999999
Q ss_pred HhcccCCCeeEEeCcccCCCHHHHHHHHHHHHHHc-CCCeEEEEccCccccc-cCCEEEEEeCCEEEEecCchhhhhc
Q 001411 356 RAVLRNPKILLLDEATSALDAESELIVQRALEKIM-SNRTTIVVAHRLSTVR-DVDTIMVLKNGQVVESGTHVDLISK 431 (1082)
Q Consensus 356 Ral~~~~~illlDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~vtH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~~ 431 (1082)
|||+.+|+++||||||++||+.+...+.+.|.++. +++|+|++||+++.+. .||++++|++|++++.|+++++...
T Consensus 150 ral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~~til~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 227 (275)
T PRK13639 150 GILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDVDLVPVYADKVYVMSDGKIIKEGTPKEVFSD 227 (275)
T ss_pred HHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 99999999999999999999999999999999875 4789999999999886 5999999999999999999888653
|
|
| >PRK14262 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-40 Score=360.22 Aligned_cols=218 Identities=31% Similarity=0.515 Sum_probs=182.2
Q ss_pred cEEEEEEEEECCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHHhCCCC-----CCcEEEECCeeCCCC--CHH
Q 001411 205 QIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEP-----TSGKILLDGHDLKSL--QLK 277 (1082)
Q Consensus 205 ~i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~-----~~G~i~~~g~~~~~~--~~~ 277 (1082)
.|+++|+++.|++ .++|+|+||++++||+++|+||||||||||+++|+|+++| ++|+|.++|.++... +..
T Consensus 3 ~l~~~~l~~~~~~--~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~~~ 80 (250)
T PRK14262 3 IIEIENFSAYYGE--KKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDVT 80 (250)
T ss_pred eEEEEeeEEEeCC--ceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchhhHH
Confidence 4899999999974 3499999999999999999999999999999999999984 899999999988653 334
Q ss_pred HHhhhceEEccCCCcChhcHHHHHhcCCCC---CCH----HHHHHHHHHhchHHHHhcCCCCccccccCCCCCCChHHHH
Q 001411 278 WLREQMGLVSQEPALFATSIANNILLGKED---ASM----DRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQ 350 (1082)
Q Consensus 278 ~~~~~i~~v~Q~~~l~~~ti~~ni~~g~~~---~~~----~~~~~~~~~~~~~~~i~~lp~g~~t~~g~~g~~LSgGqkq 350 (1082)
.+++.++|++|++.+|+.|++||+.++... ... +++.++++..++.+.+ +...+....+|||||||
T Consensus 81 ~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LS~Gq~q 153 (250)
T PRK14262 81 EYRKKVGMVFQKPTPFPMSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEV-------KSELNKPGTRLSGGQQQ 153 (250)
T ss_pred HhhhhEEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCchh-------HHHHhCChhhcCHHHHH
Confidence 567889999999999999999999875311 111 1233344444332221 22345667899999999
Q ss_pred HHHHHHhcccCCCeeEEeCcccCCCHHHHHHHHHHHHHHcCCCeEEEEccCccccc-cCCEEEEEeCCEEEEecCchhhh
Q 001411 351 RIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVR-DVDTIMVLKNGQVVESGTHVDLI 429 (1082)
Q Consensus 351 ri~lARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~vtH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~ 429 (1082)
|++|||||+.+|+++||||||++||+.+...+.+.|.++.+++|+|++||+++.+. .||++++|++|++++.|+++++.
T Consensus 154 r~~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tili~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 233 (250)
T PRK14262 154 RLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSENYTIVIVTHNIGQAIRIADYIAFMYRGELIEYGPTREIV 233 (250)
T ss_pred HHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHH
Confidence 99999999999999999999999999999999999998877789999999999765 59999999999999999998886
Q ss_pred hc
Q 001411 430 SK 431 (1082)
Q Consensus 430 ~~ 431 (1082)
+.
T Consensus 234 ~~ 235 (250)
T PRK14262 234 ER 235 (250)
T ss_pred hC
Confidence 53
|
|
| >PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-40 Score=359.37 Aligned_cols=211 Identities=28% Similarity=0.454 Sum_probs=177.4
Q ss_pred cEEEEEEEEECCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHHhCCCCC---CcEEEECCeeCCCC-----CH
Q 001411 205 QIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPT---SGKILLDGHDLKSL-----QL 276 (1082)
Q Consensus 205 ~i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~---~G~i~~~g~~~~~~-----~~ 276 (1082)
-++++|+++.|++ ..+|+|+||++++||+++|+||||||||||+++|+|+++|+ +|+|.++|.++... +.
T Consensus 4 ~l~~~nl~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~~~ 81 (262)
T PRK09984 4 IIRVEKLAKTFNQ--HQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARDI 81 (262)
T ss_pred EEEEeeEEEEeCC--eEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccchhH
Confidence 4899999999974 34999999999999999999999999999999999999986 49999999988643 23
Q ss_pred HHHhhhceEEccCCCcChh-cHHHHHhcCCCCC-----------C---HHHHHHHHHHhchHHHHhcCCCCccccccCCC
Q 001411 277 KWLREQMGLVSQEPALFAT-SIANNILLGKEDA-----------S---MDRVIEAAKAANAHSFVEGLPDGYQTQVGEGG 341 (1082)
Q Consensus 277 ~~~~~~i~~v~Q~~~l~~~-ti~~ni~~g~~~~-----------~---~~~~~~~~~~~~~~~~i~~lp~g~~t~~g~~g 341 (1082)
..+++.++|++|++.+|+. |++||+.++.... . .+++.++++..++ +.......
T Consensus 82 ~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l-----------~~~~~~~~ 150 (262)
T PRK09984 82 RKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGM-----------VHFAHQRV 150 (262)
T ss_pred HHHHhheEEEccccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCC-----------HHHHhCCc
Confidence 5567889999999998875 9999998763211 0 1123333333333 33344556
Q ss_pred CCCChHHHHHHHHHHhcccCCCeeEEeCcccCCCHHHHHHHHHHHHHHc--CCCeEEEEccCccccc-cCCEEEEEeCCE
Q 001411 342 TQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIM--SNRTTIVVAHRLSTVR-DVDTIMVLKNGQ 418 (1082)
Q Consensus 342 ~~LSgGqkqri~lARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~--~~~t~i~vtH~~~~~~-~~d~i~~l~~G~ 418 (1082)
.+||||||||++|||||+.+|++|||||||++||+++.+.+.+.|+++. +++|+|++||+++.+. .||+|++|++|+
T Consensus 151 ~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~~~~~~~d~i~~l~~g~ 230 (262)
T PRK09984 151 STLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVDYALRYCERIVALRQGH 230 (262)
T ss_pred cccCHHHHHHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCE
Confidence 6899999999999999999999999999999999999999999999875 3789999999999865 589999999999
Q ss_pred EEEecCchhh
Q 001411 419 VVESGTHVDL 428 (1082)
Q Consensus 419 i~~~g~~~~l 428 (1082)
+++.|+++++
T Consensus 231 i~~~g~~~~~ 240 (262)
T PRK09984 231 VFYDGSSQQF 240 (262)
T ss_pred EEEeCCHHHh
Confidence 9999999886
|
|
| >cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-40 Score=352.37 Aligned_cols=205 Identities=35% Similarity=0.563 Sum_probs=169.7
Q ss_pred EEEEEEEEECCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHHhCCCCCCcEEEECCeeCCC--CCHHHHhhhc
Q 001411 206 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKS--LQLKWLREQM 283 (1082)
Q Consensus 206 i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~--~~~~~~~~~i 283 (1082)
++++|++++|++ .++|+++||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++.. .+...+++.+
T Consensus 1 l~~~~l~~~~~~--~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i 78 (213)
T cd03262 1 IEIKNLHKSFGD--FHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINELRQKV 78 (213)
T ss_pred CEEEEEEEEECC--eEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccchhHHHHHhcc
Confidence 468999999975 349999999999999999999999999999999999999999999999998853 3445678899
Q ss_pred eEEccCCCcCh-hcHHHHHhcCCC---CCCHHHHHHHHHHhchHHHHhcCCCCccccccCCCCCCChHHHHHHHHHHhcc
Q 001411 284 GLVSQEPALFA-TSIANNILLGKE---DASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVL 359 (1082)
Q Consensus 284 ~~v~Q~~~l~~-~ti~~ni~~g~~---~~~~~~~~~~~~~~~~~~~i~~lp~g~~t~~g~~g~~LSgGqkqri~lARal~ 359 (1082)
+|++|++.+|+ .|++||+.++.. ....++..+. +.+.++.+ |++..+.....+||||||||++||||++
T Consensus 79 ~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~-----~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~la~al~ 151 (213)
T cd03262 79 GMVFQQFNLFPHLTVLENITLAPIKVKGMSKAEAEER-----ALELLEKV--GLADKADAYPAQLSGGQQQRVAIARALA 151 (213)
T ss_pred eEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHH-----HHHHHHHc--CCHhHhhhCccccCHHHHHHHHHHHHHh
Confidence 99999999887 599999987532 1122211111 11223333 4444455556789999999999999999
Q ss_pred cCCCeeEEeCcccCCCHHHHHHHHHHHHHHcC-CCeEEEEccCcccccc-CCEEEEEeCCEE
Q 001411 360 RNPKILLLDEATSALDAESELIVQRALEKIMS-NRTTIVVAHRLSTVRD-VDTIMVLKNGQV 419 (1082)
Q Consensus 360 ~~~~illlDEpts~LD~~~~~~i~~~l~~~~~-~~t~i~vtH~~~~~~~-~d~i~~l~~G~i 419 (1082)
.+|+++||||||++||+.+.+.+.+.|.++.+ ++|+|++||+++.+.. ||+|++|++|++
T Consensus 152 ~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~~~~~~~~~d~i~~l~~g~i 213 (213)
T cd03262 152 MNPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMGFAREVADRVIFMDDGRI 213 (213)
T ss_pred cCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 99999999999999999999999999998754 7899999999999865 999999999974
|
Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM |
| >TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-40 Score=351.43 Aligned_cols=204 Identities=31% Similarity=0.468 Sum_probs=173.3
Q ss_pred EEEEeEEEECCCCC-CcccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCccCCCCCHH---HHh
Q 001411 835 IELRNVSFKYPVRP-DITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLR---SLR 910 (1082)
Q Consensus 835 I~~~~Vs~~Y~~~~-~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~---~lR 910 (1082)
++++||+++|+... ..++|+|+||++++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+.. ..|
T Consensus 2 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (220)
T TIGR02982 2 ISIRNLNHYYGHGSLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQLR 81 (220)
T ss_pred EEEEEEEEEccCCCcceeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEhHhcCHhHHHHHH
Confidence 78999999996321 25699999999999999999999999999999999999999999999999999877643 468
Q ss_pred cceEEEcccCcccc-ccHHHHhccCCC---CCCHH----HHHHHHHHhcHHHHHhhCcccccccccCCCCCCChhHHHHH
Q 001411 911 RKIGLVQQEPALFS-TTIYENIKYGNE---DASEI----ELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRV 982 (1082)
Q Consensus 911 ~~i~~VpQdp~Lf~-gTIreNl~~~~~---~~~d~----ei~~al~~a~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrl 982 (1082)
+.++|+||+|.+|. .|+.+|+.++.. ..+.+ .+.++++..++.+++. ....+||+|||||+
T Consensus 82 ~~i~~~~q~~~~~~~~t~~~n~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~lS~G~~qrv 150 (220)
T TIGR02982 82 RNIGYIFQAHNLLGFLTARQNVQMALELQPNLSYQEARERARAMLEAVGLGDHLD-----------YYPHNLSGGQKQRV 150 (220)
T ss_pred hheEEEcCChhhcCCCCHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCChhhhh-----------cChhhCCHHHHHHH
Confidence 89999999999997 699999986431 12222 3444455555544433 34467999999999
Q ss_pred HHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHhcC--CceEEEEecCchhhhccCEEEEEeCCEE
Q 001411 983 AIARAILKNPSILLLDEATSALDTASENLIQEALDKLME--GRTTIMVAHRLSTIRNADKIAVLQQGKV 1049 (1082)
Q Consensus 983 aLARAlL~~~~ILlLDEaTS~LD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~~~DrI~Vl~~G~i 1049 (1082)
+||||++++|++|||||||++||+++.+.+.+.|++..+ ++|+|+|||+++....||+|++|++|++
T Consensus 151 ~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~~~~~~~d~v~~l~~g~~ 219 (220)
T TIGR02982 151 AIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHDNRILDVADRIVHMEDGKL 219 (220)
T ss_pred HHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHhhCCEEEEEECCEE
Confidence 999999999999999999999999999999999998763 7999999999997777999999999986
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. |
| >PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-40 Score=367.69 Aligned_cols=223 Identities=27% Similarity=0.453 Sum_probs=182.3
Q ss_pred cEEEEEEEEECCCC--------CCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHHhCCCCCCcEEEECCeeCCCCCH
Q 001411 205 QIEFSEVCFAYPSR--------PHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQL 276 (1082)
Q Consensus 205 ~i~~~~v~~~y~~~--------~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~ 276 (1082)
-|+++|+++.|+.. ...+|+||||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|+++...+.
T Consensus 5 ~l~v~nl~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~~~g~~l~~~~~ 84 (327)
T PRK11308 5 LLQAIDLKKHYPVKRGLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKADP 84 (327)
T ss_pred eEEEeeeEEEEcCCCCccccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCCCcEEEECCEEcCcCCH
Confidence 48999999999631 2359999999999999999999999999999999999999999999999999987764
Q ss_pred H---HHhhhceEEccCCC--cChh-cHHHHHhcCC---CCCC----HHHHHHHHHHhchHHHHhcCCCCccccccCCCCC
Q 001411 277 K---WLREQMGLVSQEPA--LFAT-SIANNILLGK---EDAS----MDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQ 343 (1082)
Q Consensus 277 ~---~~~~~i~~v~Q~~~--l~~~-ti~~ni~~g~---~~~~----~~~~~~~~~~~~~~~~i~~lp~g~~t~~g~~g~~ 343 (1082)
. .+|++|+||+|+|. +++. |+.+|+..+. .... .+++.++++..++.+ . .......+
T Consensus 85 ~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~------~----~~~~~p~~ 154 (327)
T PRK11308 85 EAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINTSLSAAERREKALAMMAKVGLRP------E----HYDRYPHM 154 (327)
T ss_pred HHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHCCCCh------H----HhcCCCcc
Confidence 3 46778999999983 5554 8998886321 1111 223444444444421 1 12334568
Q ss_pred CChHHHHHHHHHHhcccCCCeeEEeCcccCCCHHHHHHHHHHHHHHcC--CCeEEEEccCcccccc-CCEEEEEeCCEEE
Q 001411 344 LSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMS--NRTTIVVAHRLSTVRD-VDTIMVLKNGQVV 420 (1082)
Q Consensus 344 LSgGqkqri~lARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~ 420 (1082)
||||||||++|||||+.+|++||+||||++||..++..+.+.|.++.+ +.|+|+|||+++.+.. ||+|++|++|+|+
T Consensus 155 LSgGq~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~adrv~vm~~G~iv 234 (327)
T PRK11308 155 FSGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLSVVEHIADEVMVMYLGRCV 234 (327)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 999999999999999999999999999999999999999999998753 7899999999999975 9999999999999
Q ss_pred EecCchhhhhcC-chhHH
Q 001411 421 ESGTHVDLISKG-GEYAA 437 (1082)
Q Consensus 421 ~~g~~~~l~~~~-~~~~~ 437 (1082)
+.|+.+++.++. ..|.+
T Consensus 235 e~g~~~~~~~~p~hpyt~ 252 (327)
T PRK11308 235 EKGTKEQIFNNPRHPYTQ 252 (327)
T ss_pred EECCHHHHhcCCCCHHHH
Confidence 999999998753 23443
|
|
| >PRK11144 modC molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-40 Score=374.51 Aligned_cols=211 Identities=27% Similarity=0.425 Sum_probs=179.5
Q ss_pred EEEEEEEEECCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHHhCCCCCCcEEEECCeeCCCC----CHHHHhh
Q 001411 206 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSL----QLKWLRE 281 (1082)
Q Consensus 206 i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~----~~~~~~~ 281 (1082)
|++ |++++|++. .+ |+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++... +....++
T Consensus 2 l~~-~l~k~~~~~---~~-~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~ 76 (352)
T PRK11144 2 LEL-NFKQQLGDL---CL-TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEKR 76 (352)
T ss_pred eEE-EEEEEeCCE---EE-EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccchhhC
Confidence 566 899999642 23 89999999999999999999999999999999999999999999988642 2344577
Q ss_pred hceEEccCCCcChh-cHHHHHhcCCCCCCHHHHHHHHHHhchHHHHhcCCCCccccccCCCCCCChHHHHHHHHHHhccc
Q 001411 282 QMGLVSQEPALFAT-SIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLR 360 (1082)
Q Consensus 282 ~i~~v~Q~~~l~~~-ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~lp~g~~t~~g~~g~~LSgGqkqri~lARal~~ 360 (1082)
.++||+|++.+|+. |++||+.++......+++.+.++..++.+.. .....+||||||||++|||||+.
T Consensus 77 ~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~l~~~gl~~~~-----------~~~~~~LSgGq~qRvalaraL~~ 145 (352)
T PRK11144 77 RIGYVFQDARLFPHYKVRGNLRYGMAKSMVAQFDKIVALLGIEPLL-----------DRYPGSLSGGEKQRVAIGRALLT 145 (352)
T ss_pred CEEEEcCCcccCCCCcHHHHHHhhhhhhhHHHHHHHHHHcCCchhh-----------hCCcccCCHHHHHHHHHHHHHHc
Confidence 89999999999975 9999999875433344555555555544333 34456899999999999999999
Q ss_pred CCCeeEEeCcccCCCHHHHHHHHHHHHHHcC--CCeEEEEccCcccccc-CCEEEEEeCCEEEEecCchhhhhcC
Q 001411 361 NPKILLLDEATSALDAESELIVQRALEKIMS--NRTTIVVAHRLSTVRD-VDTIMVLKNGQVVESGTHVDLISKG 432 (1082)
Q Consensus 361 ~~~illlDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~ 432 (1082)
+|+++||||||++||+.+.+.+.+.|+++.+ ++|+|+|||+++.+.. ||+|++|++|++++.|+++++..+.
T Consensus 146 ~p~llLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tii~vTHd~~~~~~~~d~i~~l~~G~i~~~g~~~~i~~~p 220 (352)
T PRK11144 146 APELLLMDEPLASLDLPRKRELLPYLERLAREINIPILYVSHSLDEILRLADRVVVLEQGKVKAFGPLEEVWASS 220 (352)
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEeCCEEEEecCHHHHHhCc
Confidence 9999999999999999999999999988753 6899999999998754 8999999999999999999997653
|
|
| >cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-40 Score=350.97 Aligned_cols=205 Identities=25% Similarity=0.511 Sum_probs=169.3
Q ss_pred EEEEEEEEECCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHHhCCCCCCcEEEECCeeCCCCCHHHHhhhceE
Q 001411 206 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGL 285 (1082)
Q Consensus 206 i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 285 (1082)
++++|+++.|++ ..+++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++.. .+++.++|
T Consensus 1 l~~~~l~~~~~~--~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~----~~~~~i~~ 74 (210)
T cd03269 1 LEVENVTKRFGR--VTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDI----AARNRIGY 74 (210)
T ss_pred CEEEEEEEEECC--EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCchhH----HHHccEEE
Confidence 478999999974 349999999999999999999999999999999999999999999999987753 45678999
Q ss_pred EccCCCcChh-cHHHHHhcCCCC--CCHHHHHHHHHHhchHHHHhcCCCCccccccCCCCCCChHHHHHHHHHHhcccCC
Q 001411 286 VSQEPALFAT-SIANNILLGKED--ASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNP 362 (1082)
Q Consensus 286 v~Q~~~l~~~-ti~~ni~~g~~~--~~~~~~~~~~~~~~~~~~i~~lp~g~~t~~g~~g~~LSgGqkqri~lARal~~~~ 362 (1082)
++|++.+++. |++||+.++... ....+..+ .+.+.++.+ |++........+||||||||++||||++.+|
T Consensus 75 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrl~la~al~~~p 147 (210)
T cd03269 75 LPEERGLYPKMKVIDQLVYLAQLKGLKKEEARR-----RIDEWLERL--ELSEYANKRVEELSKGNQQKVQFIAAVIHDP 147 (210)
T ss_pred eccCCcCCcCCcHHHHHHHHHHHcCCChHHHHH-----HHHHHHHHc--CChHHHhCcHhhCCHHHHHHHHHHHHHhcCC
Confidence 9999998875 999999864211 11111111 112233333 4444445566789999999999999999999
Q ss_pred CeeEEeCcccCCCHHHHHHHHHHHHHHc-CCCeEEEEccCcccccc-CCEEEEEeCCEEEEec
Q 001411 363 KILLLDEATSALDAESELIVQRALEKIM-SNRTTIVVAHRLSTVRD-VDTIMVLKNGQVVESG 423 (1082)
Q Consensus 363 ~illlDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~g 423 (1082)
+++||||||++||+.+.+.+.+.++++. +++|+|++||+++.+.. ||++++|++|++++.|
T Consensus 148 ~~lllDEP~~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~ 210 (210)
T cd03269 148 ELLILDEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQMELVEELCDRVLLLNKGRAVLYG 210 (210)
T ss_pred CEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhhhEEEEEeCCEEEecC
Confidence 9999999999999999999999998875 46899999999998864 8999999999998754
|
In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-39 Score=352.50 Aligned_cols=209 Identities=30% Similarity=0.535 Sum_probs=178.9
Q ss_pred EEEEEEEEECCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHHhCCCCCCcEEEECCeeCCCCCHHHHhhhceE
Q 001411 206 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGL 285 (1082)
Q Consensus 206 i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 285 (1082)
++++|++++|++. ..|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+.. ++.++|
T Consensus 2 l~~~~l~~~~~~~----~~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~--~~~i~~ 75 (232)
T PRK10771 2 LKLTDITWLYHHL----PMRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPPS--RRPVSM 75 (232)
T ss_pred eEEEEEEEEECCc----cceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCeecCcCChh--hccEEE
Confidence 6899999999742 2499999999999999999999999999999999999999999999998765442 467999
Q ss_pred EccCCCcChh-cHHHHHhcCCC-C-----CCHHHHHHHHHHhchHHHHhcCCCCccccccCCCCCCChHHHHHHHHHHhc
Q 001411 286 VSQEPALFAT-SIANNILLGKE-D-----ASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAV 358 (1082)
Q Consensus 286 v~Q~~~l~~~-ti~~ni~~g~~-~-----~~~~~~~~~~~~~~~~~~i~~lp~g~~t~~g~~g~~LSgGqkqri~lARal 358 (1082)
++|++.+|++ |+.||+.++.. . ...+++.++++..++.+.+++.| ..||||||||++||||+
T Consensus 76 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrv~laral 144 (232)
T PRK10771 76 LFQENNLFSHLTVAQNIGLGLNPGLKLNAAQREKLHAIARQMGIEDLLARLP-----------GQLSGGQRQRVALARCL 144 (232)
T ss_pred EecccccccCCcHHHHHhcccccccCCCHHHHHHHHHHHHHcCcHHHHhCCc-----------ccCCHHHHHHHHHHHHH
Confidence 9999999986 99999987531 1 11234556666666655554444 48999999999999999
Q ss_pred ccCCCeeEEeCcccCCCHHHHHHHHHHHHHHcC--CCeEEEEccCcccccc-CCEEEEEeCCEEEEecCchhhhhc
Q 001411 359 LRNPKILLLDEATSALDAESELIVQRALEKIMS--NRTTIVVAHRLSTVRD-VDTIMVLKNGQVVESGTHVDLISK 431 (1082)
Q Consensus 359 ~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 431 (1082)
+++|+++||||||++||+.+.+.+.+.|.++.+ ++|+|++||+++.+.. ||++++|++|++++.|+++++...
T Consensus 145 ~~~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~g~~~~~~~~ 220 (232)
T PRK10771 145 VREQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLEDAARIAPRSLVVADGRIAWDGPTDELLSG 220 (232)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhC
Confidence 999999999999999999999999999998743 7899999999999865 899999999999999999888754
|
|
| >TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-40 Score=352.12 Aligned_cols=205 Identities=28% Similarity=0.461 Sum_probs=177.4
Q ss_pred EEEEeEEEECCCCCCcccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCccCCCCCHHHHhcceE
Q 001411 835 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRKIG 914 (1082)
Q Consensus 835 I~~~~Vs~~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR~~i~ 914 (1082)
++++||+++|+ +.++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.... ++.++
T Consensus 1 l~l~~v~~~~~---~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~~~~~----~~~~~ 73 (223)
T TIGR03740 1 LETKNLSKRFG---KQTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTRKD----LHKIG 73 (223)
T ss_pred CEEEeEEEEEC---CEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEeccccc----cccEE
Confidence 47899999996 346999999999999999999999999999999999999999999999999875422 35799
Q ss_pred EEcccCcccc-ccHHHHhccCCC--CCCHHHHHHHHHHhcHHHHHhhCcccccccccCCCCCCChhHHHHHHHHHHHccC
Q 001411 915 LVQQEPALFS-TTIYENIKYGNE--DASEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKN 991 (1082)
Q Consensus 915 ~VpQdp~Lf~-gTIreNl~~~~~--~~~d~ei~~al~~a~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlaLARAlL~~ 991 (1082)
|+||++.+|. .|+++|+.++.. ..+++++.++++..++.+...+ ...+||||||||++||||++++
T Consensus 74 ~~~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~~rv~laral~~~ 142 (223)
T TIGR03740 74 SLIESPPLYENLTARENLKVHTTLLGLPDSRIDEVLNIVDLTNTGKK-----------KAKQFSLGMKQRLGIAIALLNH 142 (223)
T ss_pred EEcCCCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHcCCcHHHhh-----------hHhhCCHHHHHHHHHHHHHhcC
Confidence 9999999886 699999975321 2245567777777777654332 3357999999999999999999
Q ss_pred CCEEEeeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEecCchhhh-ccCEEEEEeCCEEEEecChHH
Q 001411 992 PSILLLDEATSALDTASENLIQEALDKLM-EGRTTIMVAHRLSTIR-NADKIAVLQQGKVAEIGSHEQ 1057 (1082)
Q Consensus 992 ~~ILlLDEaTS~LD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~-~~DrI~Vl~~G~ive~G~~~e 1057 (1082)
|++|||||||++||+.+.+.+.+.|++.. +++|+|++||+++.+. .||+|++|++|++++.|++.+
T Consensus 143 p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~ 210 (223)
T TIGR03740 143 PKLLILDEPTNGLDPIGIQELRELIRSFPEQGITVILSSHILSEVQQLADHIGIISEGVLGYQGKINK 210 (223)
T ss_pred CCEEEECCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEeCCEEEEecChhh
Confidence 99999999999999999999999999875 4789999999999986 499999999999999999875
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. |
| >PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-40 Score=368.03 Aligned_cols=219 Identities=26% Similarity=0.418 Sum_probs=177.6
Q ss_pred cEEEEEEEEECCCCC--CccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHHhCCC----CCCcEEEECCeeCCCCCHHH
Q 001411 205 QIEFSEVCFAYPSRP--HMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYE----PTSGKILLDGHDLKSLQLKW 278 (1082)
Q Consensus 205 ~i~~~~v~~~y~~~~--~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~----~~~G~i~~~g~~~~~~~~~~ 278 (1082)
-++++|+++.|+... ..+|+||||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|+++..++.+.
T Consensus 3 ~L~v~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~ 82 (326)
T PRK11022 3 LLNVDKLSVHFGDESAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKE 82 (326)
T ss_pred eEEEeCeEEEECCCCccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHHH
Confidence 379999999997532 249999999999999999999999999999999999997 48999999999998887665
Q ss_pred Hhh----hceEEccCCC--cChh-cHHHHHh----cCCCCC---CHHHHHHHHHHhchHHHHhcCCCCccccccCCCCCC
Q 001411 279 LRE----QMGLVSQEPA--LFAT-SIANNIL----LGKEDA---SMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQL 344 (1082)
Q Consensus 279 ~~~----~i~~v~Q~~~--l~~~-ti~~ni~----~g~~~~---~~~~~~~~~~~~~~~~~i~~lp~g~~t~~g~~g~~L 344 (1082)
+++ .|+||+|+|. +.+. |+.+++. ...... ..+++.++++..++.+. ....+....+|
T Consensus 83 ~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~--------~~~l~~~p~~L 154 (326)
T PRK11022 83 RRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDP--------ASRLDVYPHQL 154 (326)
T ss_pred HHHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCCh--------HHHHhCCchhC
Confidence 543 6999999985 4432 6655543 211111 12234444444443211 12345566799
Q ss_pred ChHHHHHHHHHHhcccCCCeeEEeCcccCCCHHHHHHHHHHHHHHcC--CCeEEEEccCccccc-cCCEEEEEeCCEEEE
Q 001411 345 SGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMS--NRTTIVVAHRLSTVR-DVDTIMVLKNGQVVE 421 (1082)
Q Consensus 345 SgGqkqri~lARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~vtH~~~~~~-~~d~i~~l~~G~i~~ 421 (1082)
||||||||+|||||+.+|++||+||||++||+.++..+.+.|+++.+ +.|+|+|||+++.+. .||+|++|++|+|++
T Consensus 155 SgGq~QRv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl~~~~~~adri~vm~~G~ive 234 (326)
T PRK11022 155 SGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLALVAEAAHKIIVMYAGQVVE 234 (326)
T ss_pred CHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999998853 789999999999985 599999999999999
Q ss_pred ecCchhhhhc
Q 001411 422 SGTHVDLISK 431 (1082)
Q Consensus 422 ~g~~~~l~~~ 431 (1082)
.|+++++.++
T Consensus 235 ~g~~~~~~~~ 244 (326)
T PRK11022 235 TGKAHDIFRA 244 (326)
T ss_pred ECCHHHHhhC
Confidence 9999999875
|
|
| >PRK14260 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-40 Score=360.14 Aligned_cols=219 Identities=32% Similarity=0.479 Sum_probs=183.6
Q ss_pred CcEEEEEEEEECCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHHhCCCC-----CCcEEEECCeeCCC--CCH
Q 001411 204 GQIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEP-----TSGKILLDGHDLKS--LQL 276 (1082)
Q Consensus 204 ~~i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~-----~~G~i~~~g~~~~~--~~~ 276 (1082)
..++++|++++|++ ..+|+|+||++++||+++|+|+||||||||+++|+|+++| ++|+|.++|+++.. .+.
T Consensus 6 ~~l~~~~l~~~~~~--~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 83 (259)
T PRK14260 6 PAIKVKDLSFYYNT--SKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRINI 83 (259)
T ss_pred ceEEEEEEEEEECC--eEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccccccch
Confidence 36999999999974 3499999999999999999999999999999999999985 48999999998854 345
Q ss_pred HHHhhhceEEccCCCcChhcHHHHHhcCCCC---CC----HHHHHHHHHHhchHHHHhcCCCCccccccCCCCCCChHHH
Q 001411 277 KWLREQMGLVSQEPALFATSIANNILLGKED---AS----MDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQK 349 (1082)
Q Consensus 277 ~~~~~~i~~v~Q~~~l~~~ti~~ni~~g~~~---~~----~~~~~~~~~~~~~~~~i~~lp~g~~t~~g~~g~~LSgGqk 349 (1082)
..+++.++|++|++.+|+.|++||+.++... .. .+.+.++++..++.+++. ......+..||||||
T Consensus 84 ~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~~~~~LS~G~~ 156 (259)
T PRK14260 84 NRLRRQIGMVFQRPNPFPMSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQEVK-------DKLNKSALGLSGGQQ 156 (259)
T ss_pred HhhhhheEEEecccccCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhh-------hHhcCCcccCCHHHH
Confidence 5678899999999999999999999875311 11 123344555554433222 234456678999999
Q ss_pred HHHHHHHhcccCCCeeEEeCcccCCCHHHHHHHHHHHHHHcCCCeEEEEccCcccccc-CCEEEEEe-----CCEEEEec
Q 001411 350 QRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRD-VDTIMVLK-----NGQVVESG 423 (1082)
Q Consensus 350 qri~lARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~vtH~~~~~~~-~d~i~~l~-----~G~i~~~g 423 (1082)
||++|||||+++|+++||||||++||+.+...+.+.|.++.+++|+|++||+++.+.. ||++++|+ +|++++.|
T Consensus 157 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~i~~~~d~i~~l~~~~~~~G~i~~~~ 236 (259)
T PRK14260 157 QRLCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLRSELTIAIVTHNMQQATRVSDFTAFFSTDESRIGQMVEFG 236 (259)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCeEEEEeccCCCCceEEEeC
Confidence 9999999999999999999999999999999999999988777899999999999865 89999997 59999999
Q ss_pred Cchhhhhc
Q 001411 424 THVDLISK 431 (1082)
Q Consensus 424 ~~~~l~~~ 431 (1082)
+++++.+.
T Consensus 237 ~~~~~~~~ 244 (259)
T PRK14260 237 VTTQIFSN 244 (259)
T ss_pred CHHHHhcC
Confidence 99988643
|
|
| >PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-40 Score=370.10 Aligned_cols=228 Identities=26% Similarity=0.429 Sum_probs=182.6
Q ss_pred cEEEEEEEEECCCC--CCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHHhCCCCC---CcEEEECCeeCCCCCHHHH
Q 001411 205 QIEFSEVCFAYPSR--PHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPT---SGKILLDGHDLKSLQLKWL 279 (1082)
Q Consensus 205 ~i~~~~v~~~y~~~--~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~---~G~i~~~g~~~~~~~~~~~ 279 (1082)
-++++|+++.|+.. ...+++|+||+|++||+++|+|+||||||||+++|+|+++|+ +|+|.++|.++..++..++
T Consensus 12 ~L~i~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~~~~ 91 (330)
T PRK09473 12 LLDVKDLRVTFSTPDGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEKEL 91 (330)
T ss_pred eEEEeCeEEEEecCCCCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCHHHH
Confidence 58999999999632 234999999999999999999999999999999999999996 9999999999988876655
Q ss_pred h----hhceEEccCC--CcChh-cHHHHHhcCC---CCCCHHHH-HHHHHHhchHHHHhcCCCCccccccCCCCCCChHH
Q 001411 280 R----EQMGLVSQEP--ALFAT-SIANNILLGK---EDASMDRV-IEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQ 348 (1082)
Q Consensus 280 ~----~~i~~v~Q~~--~l~~~-ti~~ni~~g~---~~~~~~~~-~~~~~~~~~~~~i~~lp~g~~t~~g~~g~~LSgGq 348 (1082)
+ +.|+||+|+| .+++. |+.+|+.... ...+.++. ..+.+.. +. ..+|++. ..++..+.+|||||
T Consensus 92 ~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~L---~~-vgL~~~~-~~~~~~p~~LSgG~ 166 (330)
T PRK09473 92 NKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRML---DA-VKMPEAR-KRMKMYPHEFSGGM 166 (330)
T ss_pred HHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHH---HH-cCCCChH-HHhcCCcccCCHHH
Confidence 3 4799999998 45543 7777775321 11122221 1111111 11 2344433 23567778999999
Q ss_pred HHHHHHHHhcccCCCeeEEeCcccCCCHHHHHHHHHHHHHHcC--CCeEEEEccCccccc-cCCEEEEEeCCEEEEecCc
Q 001411 349 KQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMS--NRTTIVVAHRLSTVR-DVDTIMVLKNGQVVESGTH 425 (1082)
Q Consensus 349 kqri~lARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~vtH~~~~~~-~~d~i~~l~~G~i~~~g~~ 425 (1082)
|||++|||||+.+|+++|+|||||+||+.++..+.+.|+++.+ +.|+|+|||+++.+. .||+|++|++|+|++.|++
T Consensus 167 ~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~~Dri~vm~~G~ive~g~~ 246 (330)
T PRK09473 167 RQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLGVVAGICDKVLVMYAGRTMEYGNA 246 (330)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEECCH
Confidence 9999999999999999999999999999999999999998854 789999999999986 4899999999999999999
Q ss_pred hhhhhcC-chhHH
Q 001411 426 VDLISKG-GEYAA 437 (1082)
Q Consensus 426 ~~l~~~~-~~~~~ 437 (1082)
+++.+.. ..|.+
T Consensus 247 ~~i~~~p~~pyt~ 259 (330)
T PRK09473 247 RDVFYQPSHPYSI 259 (330)
T ss_pred HHHHhCCCCHHHH
Confidence 9998753 34544
|
|
| >PRK14254 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-40 Score=362.02 Aligned_cols=219 Identities=28% Similarity=0.485 Sum_probs=182.2
Q ss_pred CcEEEEEEEEECCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHHhCCC-----CCCcEEEECCeeCCC--CCH
Q 001411 204 GQIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYE-----PTSGKILLDGHDLKS--LQL 276 (1082)
Q Consensus 204 ~~i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~-----~~~G~i~~~g~~~~~--~~~ 276 (1082)
..|+++|++++|++ ..+|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++.. .+.
T Consensus 38 ~~l~i~~l~~~~~~--~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~~~~ 115 (285)
T PRK14254 38 TVIEARDLNVFYGD--EQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVDP 115 (285)
T ss_pred ceEEEEEEEEEECC--EeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccch
Confidence 35999999999975 349999999999999999999999999999999999997 689999999999854 345
Q ss_pred HHHhhhceEEccCCCcChhcHHHHHhcCCCC--C---CHHHHHHHHHHhchHHHHhcCCCCccccccCCCCCCChHHHHH
Q 001411 277 KWLREQMGLVSQEPALFATSIANNILLGKED--A---SMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQR 351 (1082)
Q Consensus 277 ~~~~~~i~~v~Q~~~l~~~ti~~ni~~g~~~--~---~~~~~~~~~~~~~~~~~i~~lp~g~~t~~g~~g~~LSgGqkqr 351 (1082)
..+++.++|++|++.+|+.|++||+.++... . ..+++.++++..++...+ ....+....+||||||||
T Consensus 116 ~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i-------~~~~~~~~~~LSgGe~qr 188 (285)
T PRK14254 116 VALRRRIGMVFQKPNPFPKSIYDNVAYGLKIQGYDGDIDERVEESLRRAALWDEV-------KDQLDSSGLDLSGGQQQR 188 (285)
T ss_pred HhhhccEEEEecCCccCcCCHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCchh-------HHHHhCCcccCCHHHHHH
Confidence 5678899999999999988999999875221 1 122344444444332111 123456677999999999
Q ss_pred HHHHHhcccCCCeeEEeCcccCCCHHHHHHHHHHHHHHcCCCeEEEEccCcccccc-CCEEE-EEeCCEEEEecCchhhh
Q 001411 352 IAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRD-VDTIM-VLKNGQVVESGTHVDLI 429 (1082)
Q Consensus 352 i~lARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~vtH~~~~~~~-~d~i~-~l~~G~i~~~g~~~~l~ 429 (1082)
++|||||+++|+||||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+.. ||+++ +|++|++++.|+++++.
T Consensus 189 v~LAraL~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~~~~tiii~tH~~~~i~~~~dri~v~l~~G~i~~~g~~~~~~ 268 (285)
T PRK14254 189 LCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAEEYTVVIVTHNMQQAARISDKTAVFLTGGELVEFDDTDKIF 268 (285)
T ss_pred HHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEeeCCEEEEeCCHHHHH
Confidence 99999999999999999999999999999999999998767899999999999865 89975 57999999999988876
Q ss_pred hc
Q 001411 430 SK 431 (1082)
Q Consensus 430 ~~ 431 (1082)
.+
T Consensus 269 ~~ 270 (285)
T PRK14254 269 EN 270 (285)
T ss_pred hC
Confidence 43
|
|
| >COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-40 Score=362.88 Aligned_cols=214 Identities=30% Similarity=0.537 Sum_probs=184.1
Q ss_pred cEEEEEEEEECCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHHhCCCCCCcEEEECCeeCCCCCHHHHhhhce
Q 001411 205 QIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMG 284 (1082)
Q Consensus 205 ~i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 284 (1082)
.++++|++++|++ ...+|+||||++++||++|++||||||||||+|+|+|++.|++|+|.++|.+...- ....+++||
T Consensus 4 ~i~~~~l~k~~~~-~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~-~~~~~~~ig 81 (293)
T COG1131 4 VIEVRNLTKKYGG-DKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKE-PAKVRRRIG 81 (293)
T ss_pred eeeecceEEEeCC-CCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccC-HHHHHhheE
Confidence 4788999999973 23499999999999999999999999999999999999999999999999988655 677889999
Q ss_pred EEccCCCcChh-cHHHHHhcCC-----CC-CCHHHHHHHHHHhchHHHHhcCCCCccccccCCCCCCChHHHHHHHHHHh
Q 001411 285 LVSQEPALFAT-SIANNILLGK-----ED-ASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARA 357 (1082)
Q Consensus 285 ~v~Q~~~l~~~-ti~~ni~~g~-----~~-~~~~~~~~~~~~~~~~~~i~~lp~g~~t~~g~~g~~LSgGqkqri~lARa 357 (1082)
|+||+|.+++. |++||+.|.. +. ...+++.+.++..++.+. -......||+|||||++||+|
T Consensus 82 y~~~~~~~~~~lT~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~-----------~~~~~~~lS~G~kqrl~ia~a 150 (293)
T COG1131 82 YVPQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELLELFGLEDK-----------ANKKVRTLSGGMKQRLSIALA 150 (293)
T ss_pred EEccCCCCCccccHHHHHHHHHHHhCCChhHHHHHHHHHHHHcCCchh-----------hCcchhhcCHHHHHHHHHHHH
Confidence 99999998877 9999998742 21 123456666666554331 134456899999999999999
Q ss_pred cccCCCeeEEeCcccCCCHHHHHHHHHHHHHHcC-C-CeEEEEccCcccccc-CCEEEEEeCCEEEEecCchhhhhc
Q 001411 358 VLRNPKILLLDEATSALDAESELIVQRALEKIMS-N-RTTIVVAHRLSTVRD-VDTIMVLKNGQVVESGTHVDLISK 431 (1082)
Q Consensus 358 l~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~-~-~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 431 (1082)
|+.+|++|||||||++||+.+...+.+.|+++.+ + +||+++||.++.+.. ||+|++|++|+++..|+.+++...
T Consensus 151 L~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~e~~~~~d~v~il~~G~~~~~g~~~~l~~~ 227 (293)
T COG1131 151 LLHDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILEEAEELCDRVIILNDGKIIAEGTPEELKEK 227 (293)
T ss_pred HhcCCCEEEECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHHHHHHhCCEEEEEeCCEEEEeCCHHHHHHh
Confidence 9999999999999999999999999999999865 4 699999999999876 999999999999999998887543
|
|
| >TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-39 Score=356.70 Aligned_cols=226 Identities=28% Similarity=0.431 Sum_probs=183.1
Q ss_pred cEEEEeEEEECCCCCCcccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcc-----CCCCCHHH
Q 001411 834 NIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYD-----IRTLNLRS 908 (1082)
Q Consensus 834 ~I~~~~Vs~~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~d-----i~~i~~~~ 908 (1082)
.|+++||+++|+ +.++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.+ +..++...
T Consensus 3 ~l~~~~l~~~~~---~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 79 (253)
T TIGR02323 3 LLQVSGLSKSYG---GGKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEAE 79 (253)
T ss_pred eEEEeeeEEEeC---CceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEecccccccccccCCHHH
Confidence 489999999996 3468999999999999999999999999999999999999999999999988 77766543
Q ss_pred ----HhcceEEEcccCc--c-ccccHHHHhccC---CCCCCHHHHHHHHHHhcHHHHHhhCccccc-ccccCCCCCCChh
Q 001411 909 ----LRRKIGLVQQEPA--L-FSTTIYENIKYG---NEDASEIELMKATKAANAHGFISRMPEGYQ-SHVGDRGVQLSGG 977 (1082)
Q Consensus 909 ----lR~~i~~VpQdp~--L-f~gTIreNl~~~---~~~~~d~ei~~al~~a~l~~~i~~lp~gld-t~v~e~G~~LSgG 977 (1082)
+++.++|++|+|. + +..|+.+|+... .......+. ...+.++++.+ |++ +........||||
T Consensus 80 ~~~~~~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-----~~~~~~~l~~l--~l~~~~~~~~~~~LSgG 152 (253)
T TIGR02323 80 RRRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARHYGNI-----RAAAHDWLEEV--EIDPTRIDDLPRAFSGG 152 (253)
T ss_pred HHHhhhcceEEEEeCcccccCccccHHHHHHHHHHHhcccchHHH-----HHHHHHHHHHc--CCChhhhhcCchhcCHH
Confidence 3467999999985 2 345888887531 000011111 12334455554 343 3455567789999
Q ss_pred HHHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHhcC--CceEEEEecCchhhhc-cCEEEEEeCCEEEEecC
Q 001411 978 QKQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLME--GRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGS 1054 (1082)
Q Consensus 978 QrQrlaLARAlL~~~~ILlLDEaTS~LD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~G~ 1054 (1082)
||||++|||||+++|++|||||||++||+.+.+.+.+.|++..+ +.|+|+|||+++.+.. ||++++|++|++++.|+
T Consensus 153 ~~qrv~laral~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~~~~~~~~~d~~~~l~~G~i~~~~~ 232 (253)
T TIGR02323 153 MQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLGVARLLAQRLLVMQQGRVVESGL 232 (253)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEECC
Confidence 99999999999999999999999999999999999999998643 7899999999999975 99999999999999999
Q ss_pred hHHHhhhccchHHHH
Q 001411 1055 HEQLLRKENGIYKQL 1069 (1082)
Q Consensus 1055 ~~eLl~~~~g~f~~l 1069 (1082)
++++..++...|.++
T Consensus 233 ~~~~~~~~~~~~~~~ 247 (253)
T TIGR02323 233 TDQVLDDPQHPYTQL 247 (253)
T ss_pred HHHHhcCCCCHHHHH
Confidence 999986544455544
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se. |
| >cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-40 Score=344.38 Aligned_cols=191 Identities=25% Similarity=0.382 Sum_probs=163.7
Q ss_pred cEEEEeEEEECCCC-CCcccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccc---CCccEEEECCccCCCCCHHHH
Q 001411 834 NIELRNVSFKYPVR-PDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYD---PISGTVLIDGYDIRTLNLRSL 909 (1082)
Q Consensus 834 ~I~~~~Vs~~Y~~~-~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~---p~~G~I~idG~di~~i~~~~l 909 (1082)
.+.++||+|.|+.. .+.++|+|+||+|++||++||+|+||||||||+++|.|+++ |++|+|.+||.++...+ ...
T Consensus 3 ~~~~~~~~~~~~~~~~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~-~~~ 81 (202)
T cd03233 3 TLSWRNISFTTGKGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFA-EKY 81 (202)
T ss_pred eEEEEccEEEeccCCCCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccch-hhh
Confidence 37899999999843 35679999999999999999999999999999999999999 89999999999988765 457
Q ss_pred hcceEEEcccCcccc-ccHHHHhccCCCCCCHHHHHHHHHHhcHHHHHhhCcccccccccCCCCCCChhHHHHHHHHHHH
Q 001411 910 RRKIGLVQQEPALFS-TTIYENIKYGNEDASEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAI 988 (1082)
Q Consensus 910 R~~i~~VpQdp~Lf~-gTIreNl~~~~~~~~d~ei~~al~~a~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlaLARAl 988 (1082)
|++++|+||++.+|. .|+++|+.++.. . . .+ +....||+|||||++|||||
T Consensus 82 ~~~i~~~~q~~~~~~~~tv~~~l~~~~~------~----~--------------~~----~~~~~LS~Ge~qrl~laral 133 (202)
T cd03233 82 PGEIIYVSEEDVHFPTLTVRETLDFALR------C----K--------------GN----EFVRGISGGERKRVSIAEAL 133 (202)
T ss_pred cceEEEEecccccCCCCcHHHHHhhhhh------h----c--------------cc----cchhhCCHHHHHHHHHHHHH
Confidence 889999999998887 499999986321 0 0 12 23357999999999999999
Q ss_pred ccCCCEEEeeCCCCCCCHHHHHHHHHHHHHhcC--CceEEEEec-Cchhhh-ccCEEEEEeCCEEEEec
Q 001411 989 LKNPSILLLDEATSALDTASENLIQEALDKLME--GRTTIMVAH-RLSTIR-NADKIAVLQQGKVAEIG 1053 (1082)
Q Consensus 989 L~~~~ILlLDEaTS~LD~~te~~I~~~l~~~~~--~~TvI~IaH-rl~ti~-~~DrI~Vl~~G~ive~G 1053 (1082)
+++|++|||||||++||+++.+.+.+.|++..+ ++|+|+++| +++.+. .||+|++|++|++++.|
T Consensus 134 ~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h~~~~~~~~~d~i~~l~~G~i~~~g 202 (202)
T cd03233 134 VSRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQASDEIYDLFDKVLVLYEGRQIYYG 202 (202)
T ss_pred hhCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHhCCeEEEEECCEEEecC
Confidence 999999999999999999999999999998754 567666655 556764 59999999999999865
|
PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13547 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-39 Score=358.18 Aligned_cols=221 Identities=24% Similarity=0.404 Sum_probs=182.2
Q ss_pred EEEEEEEEECCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHHhCCCCC--------CcEEEECCeeCCCCCHH
Q 001411 206 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPT--------SGKILLDGHDLKSLQLK 277 (1082)
Q Consensus 206 i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~--------~G~i~~~g~~~~~~~~~ 277 (1082)
++++|++++|+++ .+|+|+||+|++||+++|+||||||||||+++|+|+++|+ +|+|.++|.++...+..
T Consensus 2 l~~~nl~~~~~~~--~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~~~~ 79 (272)
T PRK13547 2 LTADHLHVARRHR--AILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAIDAP 79 (272)
T ss_pred eEEEEEEEEECCE--eEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccCCHH
Confidence 6899999999753 4999999999999999999999999999999999999998 99999999999877777
Q ss_pred HHhhhceEEccCCC-cChhcHHHHHhcCCCCC-CHHHHHHHHHHhchHHHHhcCCCCccccccCCCCCCChHHHHHHHHH
Q 001411 278 WLREQMGLVSQEPA-LFATSIANNILLGKEDA-SMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIA 355 (1082)
Q Consensus 278 ~~~~~i~~v~Q~~~-l~~~ti~~ni~~g~~~~-~~~~~~~~~~~~~~~~~i~~lp~g~~t~~g~~g~~LSgGqkqri~lA 355 (1082)
.+++.++|++|++. +|..|++||+.++.... .............+.+.++.+ |+++..+....+||||||||++||
T Consensus 80 ~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~LSgG~~qrv~la 157 (272)
T PRK13547 80 RLARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALA--GATALVGRDVTTLSGGELARVQFA 157 (272)
T ss_pred HHHhhcEEecccCCCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHc--CcHhhhcCCcccCCHHHHHHHHHH
Confidence 78888999999986 56779999998763210 000000000001112223333 555666777789999999999999
Q ss_pred Hhcc---------cCCCeeEEeCcccCCCHHHHHHHHHHHHHHcC--CCeEEEEccCccccc-cCCEEEEEeCCEEEEec
Q 001411 356 RAVL---------RNPKILLLDEATSALDAESELIVQRALEKIMS--NRTTIVVAHRLSTVR-DVDTIMVLKNGQVVESG 423 (1082)
Q Consensus 356 Ral~---------~~~~illlDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~vtH~~~~~~-~~d~i~~l~~G~i~~~g 423 (1082)
|||+ .+|++|||||||++||+.+.+.+.+.|.++.+ ++|+|+|||+++.+. .||++++|++|++++.|
T Consensus 158 ral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~~~~~~~~d~i~~l~~G~i~~~g 237 (272)
T PRK13547 158 RVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPNLAARHADRIAMLADGAIVAHG 237 (272)
T ss_pred HHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCeEEEec
Confidence 9999 59999999999999999999999999998753 689999999999986 59999999999999999
Q ss_pred Cchhhhh
Q 001411 424 THVDLIS 430 (1082)
Q Consensus 424 ~~~~l~~ 430 (1082)
+++++..
T Consensus 238 ~~~~~~~ 244 (272)
T PRK13547 238 APADVLT 244 (272)
T ss_pred CHHHHcC
Confidence 9988865
|
|
| >cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-40 Score=336.47 Aligned_cols=170 Identities=38% Similarity=0.689 Sum_probs=158.0
Q ss_pred EEEEeEEEECCCCCCcccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCccCCCCCHHHHhcceE
Q 001411 835 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRKIG 914 (1082)
Q Consensus 835 I~~~~Vs~~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR~~i~ 914 (1082)
++++||+++|+. .++|+|+||+|++||.++|+|+||||||||+++|.|+++|++|+|.+||.++...+ ..+|++++
T Consensus 1 l~~~~l~~~~~~---~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~-~~~~~~i~ 76 (173)
T cd03230 1 IEVRNLSKRYGK---KTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEP-EEVKRRIG 76 (173)
T ss_pred CEEEEEEEEECC---eeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccch-HhhhccEE
Confidence 478999999962 36999999999999999999999999999999999999999999999999988765 67789999
Q ss_pred EEcccCccccc-cHHHHhccCCCCCCHHHHHHHHHHhcHHHHHhhCcccccccccCCCCCCChhHHHHHHHHHHHccCCC
Q 001411 915 LVQQEPALFST-TIYENIKYGNEDASEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPS 993 (1082)
Q Consensus 915 ~VpQdp~Lf~g-TIreNl~~~~~~~~d~ei~~al~~a~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlaLARAlL~~~~ 993 (1082)
|+||+|.+|.+ |+++|+. ||||||||++|||||+++|+
T Consensus 77 ~~~q~~~~~~~~tv~~~~~-----------------------------------------LS~G~~qrv~laral~~~p~ 115 (173)
T cd03230 77 YLPEEPSLYENLTVRENLK-----------------------------------------LSGGMKQRLALAQALLHDPE 115 (173)
T ss_pred EEecCCccccCCcHHHHhh-----------------------------------------cCHHHHHHHHHHHHHHcCCC
Confidence 99999999886 9999974 99999999999999999999
Q ss_pred EEEeeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEecCchhhh-ccCEEEEEeCCEE
Q 001411 994 ILLLDEATSALDTASENLIQEALDKLM-EGRTTIMVAHRLSTIR-NADKIAVLQQGKV 1049 (1082)
Q Consensus 994 ILlLDEaTS~LD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~-~~DrI~Vl~~G~i 1049 (1082)
+|||||||++||+.+.+.+.+.|++.. ++.|+|++||+.+.+. .||+|++|++|++
T Consensus 116 illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~~~~~~~d~i~~l~~g~i 173 (173)
T cd03230 116 LLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILEEAERLCDRVAILNNGRI 173 (173)
T ss_pred EEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhCCEEEEEeCCCC
Confidence 999999999999999999999999875 4689999999999987 4999999999974
|
In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-40 Score=348.10 Aligned_cols=229 Identities=29% Similarity=0.521 Sum_probs=185.1
Q ss_pred EEEEeEEEECCCCC-CcccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccc-C----CccEEEECCccCCCCCHHH
Q 001411 835 IELRNVSFKYPVRP-DITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYD-P----ISGTVLIDGYDIRTLNLRS 908 (1082)
Q Consensus 835 I~~~~Vs~~Y~~~~-~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~-p----~~G~I~idG~di~~i~~~~ 908 (1082)
++++|++.+|.... ...+++||||+|++||++||||.|||||||+.++++|+.+ | .+|+|.++|.|+-+++.+.
T Consensus 2 L~v~nL~v~f~~~~g~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~~ 81 (316)
T COG0444 2 LEVKNLSVSFPTDAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKE 81 (316)
T ss_pred ceEeeeEEEEecCCccEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHHH
Confidence 57899999997432 2479999999999999999999999999999999999997 3 5799999999999999875
Q ss_pred Hh----cceEEEcccCcc-cc--ccHHHHh----ccCCCCCC----HHHHHHHHHHhcHHHHHhhCcccccccccCCCCC
Q 001411 909 LR----RKIGLVQQEPAL-FS--TTIYENI----KYGNEDAS----EIELMKATKAANAHGFISRMPEGYQSHVGDRGVQ 973 (1082)
Q Consensus 909 lR----~~i~~VpQdp~L-f~--gTIreNl----~~~~~~~~----d~ei~~al~~a~l~~~i~~lp~gldt~v~e~G~~ 973 (1082)
+| +.|++|||||.- |+ -||.+-+ ..-....+ .+...+.++.+++.+-- ..+..-..+
T Consensus 82 ~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~~--------~~~~~YPhe 153 (316)
T COG0444 82 LRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPDPE--------RRLKSYPHE 153 (316)
T ss_pred HHhhcCceEEEEEcCchhhcCChhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCCHH--------HHHhhCCcc
Confidence 43 479999999851 22 1333332 22010001 23455666777665321 112233468
Q ss_pred CChhHHHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHhcC--CceEEEEecCchhhhc-cCEEEEEeCCEEE
Q 001411 974 LSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLME--GRTTIMVAHRLSTIRN-ADKIAVLQQGKVA 1050 (1082)
Q Consensus 974 LSgGQrQrlaLARAlL~~~~ILlLDEaTS~LD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~~-~DrI~Vl~~G~iv 1050 (1082)
||||||||+.||-||+.+|++||-||||++||..+.++|.+.|++..+ +.|+|+|||++..+.. ||||+||..|+||
T Consensus 154 lSGGMrQRV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilITHDl~vva~~aDri~VMYaG~iV 233 (316)
T COG0444 154 LSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLGVVAEIADRVAVMYAGRIV 233 (316)
T ss_pred cCCcHHHHHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcceEEEEECcEEE
Confidence 999999999999999999999999999999999999999999998864 8899999999999865 9999999999999
Q ss_pred EecChHHHhhhccchHHHHHH
Q 001411 1051 EIGSHEQLLRKENGIYKQLIR 1071 (1082)
Q Consensus 1051 e~G~~~eLl~~~~g~f~~l~~ 1071 (1082)
|.|+.+++++++...|.+.+-
T Consensus 234 E~g~~~~i~~~P~HPYT~~Ll 254 (316)
T COG0444 234 EEGPVEEIFKNPKHPYTRGLL 254 (316)
T ss_pred EeCCHHHHhcCCCChHHHHHH
Confidence 999999999988888877653
|
|
| >PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-39 Score=358.16 Aligned_cols=226 Identities=26% Similarity=0.436 Sum_probs=182.9
Q ss_pred cEEEEEEEEECCCC-------CCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHHhCCCCCCcEEEECCeeCCCCCHH
Q 001411 205 QIEFSEVCFAYPSR-------PHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLK 277 (1082)
Q Consensus 205 ~i~~~~v~~~y~~~-------~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~ 277 (1082)
.|+++|++++|++. ..++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+..
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~ 83 (267)
T PRK15112 4 LLEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDYS 83 (267)
T ss_pred eEEEeceEEEecCCCCcccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCchh
Confidence 48999999999631 23599999999999999999999999999999999999999999999999998755555
Q ss_pred HHhhhceEEccCCC--cChh-cHHHHHhcCCC---CCC----HHHHHHHHHHhchHHHHhcCCCCccccccCCCCCCChH
Q 001411 278 WLREQMGLVSQEPA--LFAT-SIANNILLGKE---DAS----MDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGG 347 (1082)
Q Consensus 278 ~~~~~i~~v~Q~~~--l~~~-ti~~ni~~g~~---~~~----~~~~~~~~~~~~~~~~i~~lp~g~~t~~g~~g~~LSgG 347 (1082)
..++.++|++|++. +++. |+.+|+.++.. ... .+++.++++..++.+. .......+||||
T Consensus 84 ~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~----------~~~~~~~~LS~G 153 (267)
T PRK15112 84 YRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPD----------HASYYPHMLAPG 153 (267)
T ss_pred hHhccEEEEecCchhhcCcchhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChH----------HHhcCchhcCHH
Confidence 66678999999985 4444 89999875321 111 1234444555444211 112334589999
Q ss_pred HHHHHHHHHhcccCCCeeEEeCcccCCCHHHHHHHHHHHHHHcC--CCeEEEEccCcccccc-CCEEEEEeCCEEEEecC
Q 001411 348 QKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMS--NRTTIVVAHRLSTVRD-VDTIMVLKNGQVVESGT 424 (1082)
Q Consensus 348 qkqri~lARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~g~ 424 (1082)
||||++|||||+.+|+++||||||++||+.+.+.+.+.|.++.+ ++|+|++||+++.+.. ||++++|++|++++.|+
T Consensus 154 ~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~G~i~~~~~ 233 (267)
T PRK15112 154 QKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLGMMKHISDQVLVMHQGEVVERGS 233 (267)
T ss_pred HHHHHHHHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEecCC
Confidence 99999999999999999999999999999999999999998753 7899999999999876 89999999999999999
Q ss_pred chhhhhcC--chhHHHHH
Q 001411 425 HVDLISKG--GEYAALVN 440 (1082)
Q Consensus 425 ~~~l~~~~--~~~~~~~~ 440 (1082)
++++.... ..+..++.
T Consensus 234 ~~~~~~~~~~~~~~~~~~ 251 (267)
T PRK15112 234 TADVLASPLHELTKRLIA 251 (267)
T ss_pred HHHHhcCCCCHHHHHHHH
Confidence 99987653 33445554
|
|
| >PRK14241 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-40 Score=359.14 Aligned_cols=218 Identities=32% Similarity=0.528 Sum_probs=180.9
Q ss_pred cEEEEEEEEECCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHHhCCCC-----CCcEEEECCeeCCC--CCHH
Q 001411 205 QIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEP-----TSGKILLDGHDLKS--LQLK 277 (1082)
Q Consensus 205 ~i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~-----~~G~i~~~g~~~~~--~~~~ 277 (1082)
.++++|++++|++. .+|+|+||++++||+++|+||||||||||+++|+|+++| ++|+|.++|+++.. .+..
T Consensus 4 ~l~i~~v~~~~~~~--~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~~ 81 (258)
T PRK14241 4 RIDVKDLNIYYGSF--HAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDPV 81 (258)
T ss_pred cEEEeeEEEEECCE--eeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccccChH
Confidence 48999999999753 499999999999999999999999999999999999974 79999999998853 3455
Q ss_pred HHhhhceEEccCCCcChh-cHHHHHhcCCCC---CCH----HHHHHHHHHhchHHHHhcCCCCccccccCCCCCCChHHH
Q 001411 278 WLREQMGLVSQEPALFAT-SIANNILLGKED---ASM----DRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQK 349 (1082)
Q Consensus 278 ~~~~~i~~v~Q~~~l~~~-ti~~ni~~g~~~---~~~----~~~~~~~~~~~~~~~i~~lp~g~~t~~g~~g~~LSgGqk 349 (1082)
.+++.++|++|++.+|+. |++||+.++... ... +++.++++..++.+. ..........+||||||
T Consensus 82 ~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-------~~~~~~~~~~~LS~G~~ 154 (258)
T PRK14241 82 AVRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNE-------VKDRLDKPGGGLSGGQQ 154 (258)
T ss_pred HHhcceEEEccccccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchh-------hhhHhhCCcccCCHHHH
Confidence 678889999999998875 999999865311 111 223333433333211 12334556678999999
Q ss_pred HHHHHHHhcccCCCeeEEeCcccCCCHHHHHHHHHHHHHHcCCCeEEEEccCccccc-cCCEEEEEe------CCEEEEe
Q 001411 350 QRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVR-DVDTIMVLK------NGQVVES 422 (1082)
Q Consensus 350 qri~lARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~vtH~~~~~~-~~d~i~~l~------~G~i~~~ 422 (1082)
||++|||||+.+|+++||||||++||+.+...+.+.|.++.+++|+|++||+++.+. .||+|++|+ +|++++.
T Consensus 155 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tviivsH~~~~~~~~~d~i~~l~~~~~~~~g~i~~~ 234 (258)
T PRK14241 155 QRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELKQDYTIVIVTHNMQQAARVSDQTAFFNLEATGKPGRLVEI 234 (258)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEecccCCCCceEEec
Confidence 999999999999999999999999999999999999998876789999999999875 589999997 8999999
Q ss_pred cCchhhhhc
Q 001411 423 GTHVDLISK 431 (1082)
Q Consensus 423 g~~~~l~~~ 431 (1082)
|+++++...
T Consensus 235 ~~~~~~~~~ 243 (258)
T PRK14241 235 DDTEKIFSN 243 (258)
T ss_pred CCHHHHHhC
Confidence 999888653
|
|
| >TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-39 Score=352.77 Aligned_cols=210 Identities=34% Similarity=0.522 Sum_probs=177.6
Q ss_pred EEEEEEEEECCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHHhCCCCCCcEEEECCeeCCCCCHHHHhhhceE
Q 001411 206 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGL 285 (1082)
Q Consensus 206 i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 285 (1082)
++++|++++|+++ ++|+|+||++.+||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. .++.++|
T Consensus 1 i~i~~l~~~~~~~--~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~i~g~~~~~~~~--~~~~i~~ 76 (237)
T TIGR00968 1 IEIANISKRFGSF--QALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHA--RDRKIGF 76 (237)
T ss_pred CEEEEEEEEECCe--eeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCh--hhcCEEE
Confidence 4789999999753 49999999999999999999999999999999999999999999999999876543 4678999
Q ss_pred EccCCCcChh-cHHHHHhcCCCCC--C----HHHHHHHHHHhchHHHHhcCCCCccccccCCCCCCChHHHHHHHHHHhc
Q 001411 286 VSQEPALFAT-SIANNILLGKEDA--S----MDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAV 358 (1082)
Q Consensus 286 v~Q~~~l~~~-ti~~ni~~g~~~~--~----~~~~~~~~~~~~~~~~i~~lp~g~~t~~g~~g~~LSgGqkqri~lARal 358 (1082)
++|++.+|++ |++||+.++.... + .+++.++++..++ .........+|||||+||++|||||
T Consensus 77 ~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l-----------~~~~~~~~~~lS~G~~qrl~laral 145 (237)
T TIGR00968 77 VFQHYALFKHLTVRDNIAFGLEIRKHPKAKIKARVEELLELVQL-----------EGLGDRYPNQLSGGQRQRVALARAL 145 (237)
T ss_pred EecChhhccCCcHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCC-----------HhHhhCChhhCCHHHHHHHHHHHHH
Confidence 9999999976 9999998764321 1 1222333333333 2233444568999999999999999
Q ss_pred ccCCCeeEEeCcccCCCHHHHHHHHHHHHHHcC--CCeEEEEccCcccccc-CCEEEEEeCCEEEEecCchhhhh
Q 001411 359 LRNPKILLLDEATSALDAESELIVQRALEKIMS--NRTTIVVAHRLSTVRD-VDTIMVLKNGQVVESGTHVDLIS 430 (1082)
Q Consensus 359 ~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~ 430 (1082)
+++|+++||||||++||+++++.+.+.|.++.+ ++|+|++||+++.+.. ||++++|++|++++.|+++++.+
T Consensus 146 ~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~~~ 220 (237)
T TIGR00968 146 AVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQEEAMEVADRIVVMSNGKIEQIGSPDEVYD 220 (237)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEECCEEEEecCHHHHHc
Confidence 999999999999999999999999999998754 6899999999998765 89999999999999999888864
|
|
| >cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-40 Score=354.28 Aligned_cols=210 Identities=33% Similarity=0.541 Sum_probs=178.5
Q ss_pred EEEEEEEEECCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHHhCCCCCCcEEEECCeeCCCCCHHHHhhhceE
Q 001411 206 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGL 285 (1082)
Q Consensus 206 i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 285 (1082)
|+++|++++|++. .+++|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|+++...+. .++.++|
T Consensus 1 l~~~~l~~~~~~~--~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~--~~~~i~~ 76 (232)
T cd03300 1 IELENVSKFYGGF--VALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPP--HKRPVNT 76 (232)
T ss_pred CEEEeEEEEeCCe--eeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCh--hhcceEE
Confidence 4689999999753 49999999999999999999999999999999999999999999999999876554 2578999
Q ss_pred EccCCCcChh-cHHHHHhcCCCC--CC----HHHHHHHHHHhchHHHHhcCCCCccccccCCCCCCChHHHHHHHHHHhc
Q 001411 286 VSQEPALFAT-SIANNILLGKED--AS----MDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAV 358 (1082)
Q Consensus 286 v~Q~~~l~~~-ti~~ni~~g~~~--~~----~~~~~~~~~~~~~~~~i~~lp~g~~t~~g~~g~~LSgGqkqri~lARal 358 (1082)
++|++.+|.+ |++||+.++... .+ .+++.++++..++.+.+ .....+||||||||++||||+
T Consensus 77 ~~q~~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~lS~G~~qrl~laral 145 (232)
T cd03300 77 VFQNYALFPHLTVFENIAFGLRLKKLPKAEIKERVAEALDLVQLEGYA-----------NRKPSQLSGGQQQRVAIARAL 145 (232)
T ss_pred EecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhh-----------cCChhhCCHHHHHHHHHHHHH
Confidence 9999999876 999999865321 11 22344444444444433 344468999999999999999
Q ss_pred ccCCCeeEEeCcccCCCHHHHHHHHHHHHHHcC--CCeEEEEccCcccccc-CCEEEEEeCCEEEEecCchhhhh
Q 001411 359 LRNPKILLLDEATSALDAESELIVQRALEKIMS--NRTTIVVAHRLSTVRD-VDTIMVLKNGQVVESGTHVDLIS 430 (1082)
Q Consensus 359 ~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~ 430 (1082)
+.+|+++||||||++||+.+.+.+.+.|.++.+ ++|+|++||+++.+.. ||++++|++|++++.|+++++..
T Consensus 146 ~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~i~~l~~G~~~~~~~~~~~~~ 220 (232)
T cd03300 146 VNEPKVLLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQEEALTMSDRIAVMNKGKIQQIGTPEEIYE 220 (232)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEecCCHHHHHh
Confidence 999999999999999999999999999998753 7899999999998764 89999999999999998887764
|
PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14265 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-39 Score=357.49 Aligned_cols=219 Identities=30% Similarity=0.453 Sum_probs=183.3
Q ss_pred CcEEEEEEEEECCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHHhCCCC-----CCcEEEECCeeCCC--CCH
Q 001411 204 GQIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEP-----TSGKILLDGHDLKS--LQL 276 (1082)
Q Consensus 204 ~~i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~-----~~G~i~~~g~~~~~--~~~ 276 (1082)
..|+++|++++|++. .+|+|+||++++||+++|+||||||||||+++|+|+++| ++|+|.++|+++.. .+.
T Consensus 19 ~~l~~~nl~~~~~~~--~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~~~~ 96 (274)
T PRK14265 19 SVFEVEGVKVFYGGF--LALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQINS 96 (274)
T ss_pred ceEEEeeEEEEeCCe--EEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecccccchh
Confidence 369999999999753 499999999999999999999999999999999999863 69999999998864 334
Q ss_pred HHHhhhceEEccCCCcChhcHHHHHhcCCCCC-----CHHHHHHHHHHhchHHHHhcCCCCccccccCCCCCCChHHHHH
Q 001411 277 KWLREQMGLVSQEPALFATSIANNILLGKEDA-----SMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQR 351 (1082)
Q Consensus 277 ~~~~~~i~~v~Q~~~l~~~ti~~ni~~g~~~~-----~~~~~~~~~~~~~~~~~i~~lp~g~~t~~g~~g~~LSgGqkqr 351 (1082)
..+++.|+|++|++.+|+.|+.||+.++.... ..+.+.++++.+++.+.+ .......+..||||||||
T Consensus 97 ~~~~~~i~~v~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l-------~~~~~~~~~~LSgGq~qr 169 (274)
T PRK14265 97 VKLRRQVGMVFQRPNPFPKSIYENIAFAPRANGYKGNLDELVEDSLRRAAIWEEV-------KDKLKEKGTALSGGQQQR 169 (274)
T ss_pred HHHhhcEEEEccCCccccccHHHHHHhHHHhcCchHHHHHHHHHHHHHcccchhh-------HHHhcCCcccCCHHHHHH
Confidence 56788999999999999889999998763211 112233444444443222 223445667899999999
Q ss_pred HHHHHhcccCCCeeEEeCcccCCCHHHHHHHHHHHHHHcCCCeEEEEccCccccc-cCCEEEEEe---------CCEEEE
Q 001411 352 IAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVR-DVDTIMVLK---------NGQVVE 421 (1082)
Q Consensus 352 i~lARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~vtH~~~~~~-~~d~i~~l~---------~G~i~~ 421 (1082)
++|||||+.+|++|||||||++||+.+...+.+.|.++.+++|+|++||+++.+. .||++++|+ +|++++
T Consensus 170 v~LAraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~~~~~~~~G~~~~ 249 (274)
T PRK14265 170 LCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKEQYTIIMVTHNMQQASRVADWTAFFNTEIDEYGKRRGKLVE 249 (274)
T ss_pred HHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEecccccccccCceEEE
Confidence 9999999999999999999999999999999999999877789999999999886 489999997 899999
Q ss_pred ecCchhhhhc
Q 001411 422 SGTHVDLISK 431 (1082)
Q Consensus 422 ~g~~~~l~~~ 431 (1082)
.|+++++...
T Consensus 250 ~g~~~~~~~~ 259 (274)
T PRK14265 250 FSPTEQMFGS 259 (274)
T ss_pred eCCHHHHHhC
Confidence 9999988654
|
|
| >cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-40 Score=337.45 Aligned_cols=172 Identities=47% Similarity=0.748 Sum_probs=159.9
Q ss_pred EEEEeEEEECCCCCCcccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCccCCCCC--HHHHhcc
Q 001411 835 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLN--LRSLRRK 912 (1082)
Q Consensus 835 I~~~~Vs~~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~--~~~lR~~ 912 (1082)
|+++|++++|+ +.++++|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.++.+++ ...+++.
T Consensus 1 i~~~~l~~~~~---~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 77 (178)
T cd03229 1 LELKNVSKRYG---QKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDELPPLRRR 77 (178)
T ss_pred CEEEEEEEEEC---CeEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccchhHHHHhhc
Confidence 57899999996 346999999999999999999999999999999999999999999999999998876 5678899
Q ss_pred eEEEcccCcccc-ccHHHHhccCCCCCCHHHHHHHHHHhcHHHHHhhCcccccccccCCCCCCChhHHHHHHHHHHHccC
Q 001411 913 IGLVQQEPALFS-TTIYENIKYGNEDASEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKN 991 (1082)
Q Consensus 913 i~~VpQdp~Lf~-gTIreNl~~~~~~~~d~ei~~al~~a~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlaLARAlL~~ 991 (1082)
++|+||+|.+|. .|+++|+.+. ||||||||++||||++++
T Consensus 78 i~~~~q~~~~~~~~t~~~~l~~~---------------------------------------lS~G~~qr~~la~al~~~ 118 (178)
T cd03229 78 IGMVFQDFALFPHLTVLENIALG---------------------------------------LSGGQQQRVALARALAMD 118 (178)
T ss_pred EEEEecCCccCCCCCHHHheeec---------------------------------------CCHHHHHHHHHHHHHHCC
Confidence 999999999886 4999999763 999999999999999999
Q ss_pred CCEEEeeCCCCCCCHHHHHHHHHHHHHhcC--CceEEEEecCchhhhc-cCEEEEEeCCE
Q 001411 992 PSILLLDEATSALDTASENLIQEALDKLME--GRTTIMVAHRLSTIRN-ADKIAVLQQGK 1048 (1082)
Q Consensus 992 ~~ILlLDEaTS~LD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ 1048 (1082)
|+++||||||++||+.+...+.+.|++..+ ++|+|++||+++.+.+ ||+|++|++|+
T Consensus 119 p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~ 178 (178)
T cd03229 119 PDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLDEAARLADRVVVLRDGK 178 (178)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeCCC
Confidence 999999999999999999999999998754 6899999999999985 99999999985
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR01978 sufC FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-40 Score=356.57 Aligned_cols=214 Identities=26% Similarity=0.373 Sum_probs=172.4
Q ss_pred EEEEEEEEECCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHHhCC--CCCCcEEEECCeeCCCCCHHHH-hhh
Q 001411 206 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLY--EPTSGKILLDGHDLKSLQLKWL-REQ 282 (1082)
Q Consensus 206 i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~--~~~~G~i~~~g~~~~~~~~~~~-~~~ 282 (1082)
|+++|++++|++ ..+|+|+||+|++||+++|+||||||||||+++|+|++ +|++|+|.++|+++...+.... +..
T Consensus 1 l~~~~l~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 78 (243)
T TIGR01978 1 LKIKDLHVSVED--KEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDERARAG 78 (243)
T ss_pred CeEeeEEEEECC--EEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCCHHHhhccc
Confidence 478999999974 34999999999999999999999999999999999994 7999999999999987776554 445
Q ss_pred ceEEccCCCcChh-cHHHHHhcCCCC---------CCHHHHHHHHHHhchHHHHhcCCCCccc-cccCCCC-CCChHHHH
Q 001411 283 MGLVSQEPALFAT-SIANNILLGKED---------ASMDRVIEAAKAANAHSFVEGLPDGYQT-QVGEGGT-QLSGGQKQ 350 (1082)
Q Consensus 283 i~~v~Q~~~l~~~-ti~~ni~~g~~~---------~~~~~~~~~~~~~~~~~~i~~lp~g~~t-~~g~~g~-~LSgGqkq 350 (1082)
++|++|++.+|++ |++||+.+.... .+.++..+ .+.+.++.+ |++. ....... .|||||||
T Consensus 79 i~~v~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~~~LS~G~~q 151 (243)
T TIGR01978 79 LFLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLK-----LLKAKLALL--GMDEEFLNRSVNEGFSGGEKK 151 (243)
T ss_pred eEeeeccccccCCcCHHHHHHHHHHHhhcccccccccHHHHHH-----HHHHHHHHc--CCchhhcccccccCcCHHHHH
Confidence 9999999998886 999999764211 01111111 111222222 2321 1223333 59999999
Q ss_pred HHHHHHhcccCCCeeEEeCcccCCCHHHHHHHHHHHHHHc-CCCeEEEEccCcccccc--CCEEEEEeCCEEEEecCchh
Q 001411 351 RIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIM-SNRTTIVVAHRLSTVRD--VDTIMVLKNGQVVESGTHVD 427 (1082)
Q Consensus 351 ri~lARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~vtH~~~~~~~--~d~i~~l~~G~i~~~g~~~~ 427 (1082)
|++|||||+.+|+++||||||++||+.+.+.+.+.|.++. +++|+|+|||+++.+.. ||++++|++|++++.|++++
T Consensus 152 rl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 231 (243)
T TIGR01978 152 RNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQRLLNYIKPDYVHVLLDGRIVKSGDVEL 231 (243)
T ss_pred HHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCcEEEEEEecHHHHHhhcCCeEEEEeCCEEEEecCHHH
Confidence 9999999999999999999999999999999999999875 46899999999999875 79999999999999998765
Q ss_pred h
Q 001411 428 L 428 (1082)
Q Consensus 428 l 428 (1082)
+
T Consensus 232 ~ 232 (243)
T TIGR01978 232 A 232 (243)
T ss_pred h
Confidence 4
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA. |
| >PRK14272 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-40 Score=357.89 Aligned_cols=218 Identities=33% Similarity=0.535 Sum_probs=179.6
Q ss_pred cEEEEEEEEECCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHHhCCCCC-----CcEEEECCeeCCC--CCHH
Q 001411 205 QIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPT-----SGKILLDGHDLKS--LQLK 277 (1082)
Q Consensus 205 ~i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~-----~G~i~~~g~~~~~--~~~~ 277 (1082)
-++++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|+ +|+|.++|.++.. .+..
T Consensus 4 ~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 81 (252)
T PRK14272 4 LLSAQDVNIYYGD--KQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDPV 81 (252)
T ss_pred EEEEeeeEEEECC--EEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCccCHH
Confidence 3789999999974 35999999999999999999999999999999999999874 8999999999864 3445
Q ss_pred HHhhhceEEccCCCcChh-cHHHHHhcCCCC--C-CHHHHHHHH----HHhchHHHHhcCCCCccccccCCCCCCChHHH
Q 001411 278 WLREQMGLVSQEPALFAT-SIANNILLGKED--A-SMDRVIEAA----KAANAHSFVEGLPDGYQTQVGEGGTQLSGGQK 349 (1082)
Q Consensus 278 ~~~~~i~~v~Q~~~l~~~-ti~~ni~~g~~~--~-~~~~~~~~~----~~~~~~~~i~~lp~g~~t~~g~~g~~LSgGqk 349 (1082)
.+++.++|++|++.+|+. |+.||+.++... . ..++..+.+ +..++.+ +..........+||||||
T Consensus 82 ~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~l~~~~~~~~~~LS~G~~ 154 (252)
T PRK14272 82 AMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWD-------EVKDRLKTPATGLSGGQQ 154 (252)
T ss_pred HhhceeEEEeccCccCcCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCcch-------hhhhhhcCCcccCCHHHH
Confidence 678889999999999885 999999865321 1 222222221 2222111 111223345678999999
Q ss_pred HHHHHHHhcccCCCeeEEeCcccCCCHHHHHHHHHHHHHHcCCCeEEEEccCcccccc-CCEEEEEeCCEEEEecCchhh
Q 001411 350 QRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRD-VDTIMVLKNGQVVESGTHVDL 428 (1082)
Q Consensus 350 qri~lARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l 428 (1082)
||++|||||+++|+++||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+.. ||+|++|++|++++.|+++++
T Consensus 155 qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 234 (252)
T PRK14272 155 QRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKKVTTIIIVTHNMHQAARVSDTTSFFLVGDLVEHGPTDQL 234 (252)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999988777999999999999875 899999999999999999988
Q ss_pred hhc
Q 001411 429 ISK 431 (1082)
Q Consensus 429 ~~~ 431 (1082)
...
T Consensus 235 ~~~ 237 (252)
T PRK14272 235 FTN 237 (252)
T ss_pred HhC
Confidence 654
|
|
| >COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-40 Score=312.42 Aligned_cols=191 Identities=32% Similarity=0.554 Sum_probs=166.1
Q ss_pred CCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHHhCCCCCCcEEEECCeeCCCCCHHHHhhhceEEccCCCcChhcHH
Q 001411 219 PHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGLVSQEPALFATSIA 298 (1082)
Q Consensus 219 ~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ti~ 298 (1082)
..++|+++||++.+||+++|+||||||||||+|.++-+.+|++|++++.|++++.++++.+|++|+||.|.|.||.+||.
T Consensus 15 ~a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lisp~~G~l~f~Ge~vs~~~pea~Rq~VsY~~Q~paLfg~tVe 94 (223)
T COG4619 15 DAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEAYRQQVSYCAQTPALFGDTVE 94 (223)
T ss_pred CCeeecceeeeecCCceEEEeCCCCccHHHHHHHHHhccCCCCceEEEcCccccccChHHHHHHHHHHHcCccccccchh
Confidence 44599999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCC---C-CHHHHHHHHHHhchHHHHhcCCCCccccccCCCCCCChHHHHHHHHHHhcccCCCeeEEeCcccCC
Q 001411 299 NNILLGKED---A-SMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSAL 374 (1082)
Q Consensus 299 ~ni~~g~~~---~-~~~~~~~~~~~~~~~~~i~~lp~g~~t~~g~~g~~LSgGqkqri~lARal~~~~~illlDEpts~L 374 (1082)
||+.|...- . +..... +++.+.. -.++.+..+..+||||||||+||+|-|---|+||+||||||+|
T Consensus 95 DNlifP~~~r~rr~dr~aa~---------~llar~~-l~~~~L~k~it~lSGGE~QriAliR~Lq~~P~ILLLDE~TsAL 164 (223)
T COG4619 95 DNLIFPWQIRNRRPDRAAAL---------DLLARFA-LPDSILTKNITELSGGEKQRIALIRNLQFMPKILLLDEITSAL 164 (223)
T ss_pred hccccchHHhccCCChHHHH---------HHHHHcC-CchhhhcchhhhccchHHHHHHHHHHhhcCCceEEecCchhhc
Confidence 999986321 0 111111 2333321 1245667778899999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHc--CCCeEEEEccCccc-cccCCEEEEEeCCEE
Q 001411 375 DAESELIVQRALEKIM--SNRTTIVVAHRLST-VRDVDTIMVLKNGQV 419 (1082)
Q Consensus 375 D~~~~~~i~~~l~~~~--~~~t~i~vtH~~~~-~~~~d~i~~l~~G~i 419 (1082)
|+.+.+.|.+.|.++. ++..++.|||+.+. ++.+|+++-+..|++
T Consensus 165 D~~nkr~ie~mi~~~v~~q~vAv~WiTHd~dqa~rha~k~itl~~G~~ 212 (223)
T COG4619 165 DESNKRNIEEMIHRYVREQNVAVLWITHDKDQAIRHADKVITLQPGHA 212 (223)
T ss_pred ChhhHHHHHHHHHHHhhhhceEEEEEecChHHHhhhhheEEEeccCcc
Confidence 9999999999998875 46899999999998 788999999999875
|
|
| >PRK14252 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-39 Score=358.73 Aligned_cols=218 Identities=28% Similarity=0.448 Sum_probs=184.1
Q ss_pred CcEEEEEEEEECCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHHhCCCC-----CCcEEEECCeeCC----CC
Q 001411 204 GQIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEP-----TSGKILLDGHDLK----SL 274 (1082)
Q Consensus 204 ~~i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~-----~~G~i~~~g~~~~----~~ 274 (1082)
+.|+++|++++|++. ++|+|+||+|++||+++|+|+||||||||+++|+|+.+| ++|+|.++|.++. ..
T Consensus 15 ~~l~~~~l~~~~~~~--~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~~~~~ 92 (265)
T PRK14252 15 QKSEVNKLNFYYGGY--QALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSPEV 92 (265)
T ss_pred ceEEEEEEEEEECCe--eeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCcccccccccc
Confidence 569999999999753 499999999999999999999999999999999999875 7999999998774 23
Q ss_pred CHHHHhhhceEEccCCCcChhcHHHHHhcCCCC--C-----CHHHHHHHHHHhchHHHHhcCCCCccccccCCCCCCChH
Q 001411 275 QLKWLREQMGLVSQEPALFATSIANNILLGKED--A-----SMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGG 347 (1082)
Q Consensus 275 ~~~~~~~~i~~v~Q~~~l~~~ti~~ni~~g~~~--~-----~~~~~~~~~~~~~~~~~i~~lp~g~~t~~g~~g~~LSgG 347 (1082)
+...+++.++|++|++.+|+.|++||+.++... . ..+++.++++.+++.+ ++.+..+.....||||
T Consensus 93 ~~~~~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~l~~~~~~~~~~LS~G 165 (265)
T PRK14252 93 DPIEVRMRISMVFQKPNPFPKSIFENVAYGLRIRGVKRRSILEERVENALRNAALWD-------EVKDRLGDLAFNLSGG 165 (265)
T ss_pred CHHHHhccEEEEccCCcCCcchHHHHHHhHHHHcCCChHHHHHHHHHHHHHHcCCch-------hhhHHHhCCcccCCHH
Confidence 445678889999999999999999999875311 1 1233444444443322 3334456667899999
Q ss_pred HHHHHHHHHhcccCCCeeEEeCcccCCCHHHHHHHHHHHHHHcCCCeEEEEccCccccc-cCCEEEEEeCCEEEEecCch
Q 001411 348 QKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVR-DVDTIMVLKNGQVVESGTHV 426 (1082)
Q Consensus 348 qkqri~lARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~vtH~~~~~~-~~d~i~~l~~G~i~~~g~~~ 426 (1082)
||||++|||||+++|+++||||||++||+.+.+.+.+.|+++.+++|+|+|||+++.+. .||++++|++|++++.|+++
T Consensus 166 ~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~tiiivth~~~~~~~~~d~i~~l~~G~i~~~g~~~ 245 (265)
T PRK14252 166 QQQRLCIARALATDPEILLFDEPTSALDPIATASIEELISDLKNKVTILIVTHNMQQAARVSDYTAYMYMGELIEFGATD 245 (265)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 99999999999999999999999999999999999999998877789999999999986 58999999999999999998
Q ss_pred hhhh
Q 001411 427 DLIS 430 (1082)
Q Consensus 427 ~l~~ 430 (1082)
++..
T Consensus 246 ~~~~ 249 (265)
T PRK14252 246 TIFI 249 (265)
T ss_pred HHHh
Confidence 8764
|
|
| >PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-39 Score=351.66 Aligned_cols=208 Identities=26% Similarity=0.465 Sum_probs=180.8
Q ss_pred cEEEEeEEEECCCCCCcccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCccCCCCCHHHHhcce
Q 001411 834 NIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRKI 913 (1082)
Q Consensus 834 ~I~~~~Vs~~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR~~i 913 (1082)
.|+++||+++|+ +.++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.++| +..+
T Consensus 4 ~l~~~~l~~~~~---~~~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~~-----------~~~i 69 (251)
T PRK09544 4 LVSLENVSVSFG---QRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNG-----------KLRI 69 (251)
T ss_pred EEEEeceEEEEC---CceEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECC-----------ccCE
Confidence 489999999996 34699999999999999999999999999999999999999999999987 3479
Q ss_pred EEEcccCcccc---ccHHHHhccCCCCCCHHHHHHHHHHhcHHHHHhhCcccccccccCCCCCCChhHHHHHHHHHHHcc
Q 001411 914 GLVQQEPALFS---TTIYENIKYGNEDASEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILK 990 (1082)
Q Consensus 914 ~~VpQdp~Lf~---gTIreNl~~~~~~~~d~ei~~al~~a~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlaLARAlL~ 990 (1082)
+|+||+|.++. .|+++|+.+. +..+++++.++++..++.++..+ ....||||||||++||||+++
T Consensus 70 ~~v~q~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~l~~~gl~~~~~~-----------~~~~LSgGq~qrv~laral~~ 137 (251)
T PRK09544 70 GYVPQKLYLDTTLPLTVNRFLRLR-PGTKKEDILPALKRVQAGHLIDA-----------PMQKLSGGETQRVLLARALLN 137 (251)
T ss_pred EEeccccccccccChhHHHHHhcc-ccccHHHHHHHHHHcCChHHHhC-----------ChhhCCHHHHHHHHHHHHHhc
Confidence 99999998765 4899998652 33456778888888888766543 235799999999999999999
Q ss_pred CCCEEEeeCCCCCCCHHHHHHHHHHHHHhcC--CceEEEEecCchhhhc-cCEEEEEeCCEEEEecChHHHhhhccchHH
Q 001411 991 NPSILLLDEATSALDTASENLIQEALDKLME--GRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGSHEQLLRKENGIYK 1067 (1082)
Q Consensus 991 ~~~ILlLDEaTS~LD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~G~~~eLl~~~~g~f~ 1067 (1082)
+|++|||||||++||+.+.+.+.+.|++..+ ++|+|+|||+++.+.. ||+|++|++ ++++.|+++++.. ...|.
T Consensus 138 ~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tiiivsH~~~~i~~~~d~i~~l~~-~i~~~g~~~~~~~--~~~~~ 214 (251)
T PRK09544 138 RPQLLVLDEPTQGVDVNGQVALYDLIDQLRRELDCAVLMVSHDLHLVMAKTDEVLCLNH-HICCSGTPEVVSL--HPEFI 214 (251)
T ss_pred CCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEECC-ceEeeCCHHHHhC--CHHHH
Confidence 9999999999999999999999999998753 7899999999999865 999999965 7999999999875 45566
Q ss_pred HHH
Q 001411 1068 QLI 1070 (1082)
Q Consensus 1068 ~l~ 1070 (1082)
+++
T Consensus 215 ~~~ 217 (251)
T PRK09544 215 SMF 217 (251)
T ss_pred HHh
Confidence 665
|
|
| >PRK14275 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-39 Score=362.22 Aligned_cols=219 Identities=28% Similarity=0.457 Sum_probs=181.5
Q ss_pred CcEEEEEEEEECCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHHhCCC-----CCCcEEEECCeeCCCC--CH
Q 001411 204 GQIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYE-----PTSGKILLDGHDLKSL--QL 276 (1082)
Q Consensus 204 ~~i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~-----~~~G~i~~~g~~~~~~--~~ 276 (1082)
..++++|++++|++. .+|+|+||+|++||+++|+||||||||||+++|+|+.+ |++|+|.++|.++... +.
T Consensus 38 ~~l~~~~l~~~~~~~--~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~~~~ 115 (286)
T PRK14275 38 PHVVAKNFSIYYGEF--EAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTDE 115 (286)
T ss_pred eEEEEeeeEEEECCE--EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhcccch
Confidence 358999999999753 49999999999999999999999999999999999864 4999999999988643 33
Q ss_pred HHHhhhceEEccCCCcChhcHHHHHhcCCCC--C-CH----HHHHHHHHHhchHHHHhcCCCCccccccCCCCCCChHHH
Q 001411 277 KWLREQMGLVSQEPALFATSIANNILLGKED--A-SM----DRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQK 349 (1082)
Q Consensus 277 ~~~~~~i~~v~Q~~~l~~~ti~~ni~~g~~~--~-~~----~~~~~~~~~~~~~~~i~~lp~g~~t~~g~~g~~LSgGqk 349 (1082)
..+|+.++|++|++.+|+.|++||+.++... . .. +++.++++..++.+ +...........||||||
T Consensus 116 ~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~l~~~~~~~~~~LSgGq~ 188 (286)
T PRK14275 116 VLLRKKIGMVFQKPNPFPKSIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWD-------EVSDRLDKNALGLSGGQQ 188 (286)
T ss_pred HHhhhcEEEECCCCCCCccCHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHhCCcc-------chhhHhhCChhhCCHHHH
Confidence 4578889999999999988999999876321 1 11 22333333333211 111233456678999999
Q ss_pred HHHHHHHhcccCCCeeEEeCcccCCCHHHHHHHHHHHHHHcCCCeEEEEccCcccccc-CCEEEEEeCCEEEEecCchhh
Q 001411 350 QRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRD-VDTIMVLKNGQVVESGTHVDL 428 (1082)
Q Consensus 350 qri~lARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l 428 (1082)
||++|||||+.+|+++||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+.. ||++++|++|++++.|+++++
T Consensus 189 qrv~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tvIivsH~~~~~~~~~d~i~~L~~G~i~~~g~~~~~ 268 (286)
T PRK14275 189 QRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRGSYTIMIVTHNMQQASRVSDYTMFFYEGVLVEHAPTAQL 268 (286)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999988767899999999999864 899999999999999999888
Q ss_pred hhc
Q 001411 429 ISK 431 (1082)
Q Consensus 429 ~~~ 431 (1082)
..+
T Consensus 269 ~~~ 271 (286)
T PRK14275 269 FTN 271 (286)
T ss_pred HhC
Confidence 654
|
|
| >TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-39 Score=345.72 Aligned_cols=202 Identities=33% Similarity=0.544 Sum_probs=172.4
Q ss_pred EEEEEEEEECCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHHhCCCCCCcEEEECCeeCCCCCHHHHhhhceE
Q 001411 206 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGL 285 (1082)
Q Consensus 206 i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 285 (1082)
++++|++++|+. .++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+ .+++.++|
T Consensus 1 ~~~~~l~~~~~~----~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~--~~~~~i~~ 74 (213)
T TIGR01277 1 LALDKVRYEYEH----LPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLA--PYQRPVSM 74 (213)
T ss_pred CeEEeeeEEeCC----cceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccCC--hhccceEE
Confidence 368999999962 568999999999999999999999999999999999999999999999987543 35678999
Q ss_pred EccCCCcChh-cHHHHHhcCC-CCC-----CHHHHHHHHHHhchHHHHhcCCCCccccccCCCCCCChHHHHHHHHHHhc
Q 001411 286 VSQEPALFAT-SIANNILLGK-EDA-----SMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAV 358 (1082)
Q Consensus 286 v~Q~~~l~~~-ti~~ni~~g~-~~~-----~~~~~~~~~~~~~~~~~i~~lp~g~~t~~g~~g~~LSgGqkqri~lARal 358 (1082)
++|+|.+|.. |++||+.++. +.. ..+++.++++..++.+...+.| .+||||||||++||||+
T Consensus 75 v~q~~~~~~~~t~~en~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrl~laral 143 (213)
T TIGR01277 75 LFQENNLFAHLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQQVGIADYLDRLP-----------EQLSGGQRQRVALARCL 143 (213)
T ss_pred EeccCccCCCCcHHHHHHhHhhccCCccHHHHHHHHHHHHHcCcHHHhhCCc-----------ccCCHHHHHHHHHHHHH
Confidence 9999999875 9999998642 111 1234555666666655544444 48999999999999999
Q ss_pred ccCCCeeEEeCcccCCCHHHHHHHHHHHHHHcC--CCeEEEEccCccccc-cCCEEEEEeCCEEEEecC
Q 001411 359 LRNPKILLLDEATSALDAESELIVQRALEKIMS--NRTTIVVAHRLSTVR-DVDTIMVLKNGQVVESGT 424 (1082)
Q Consensus 359 ~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~vtH~~~~~~-~~d~i~~l~~G~i~~~g~ 424 (1082)
+.+|+++||||||++||+.+.+.+.+.|.++.+ ++|+|+|||+++.+. .||++++|++|++++.|.
T Consensus 144 ~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~tii~vsh~~~~~~~~~d~v~~l~~g~i~~~~~ 212 (213)
T TIGR01277 144 VRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHLSDARAIASQIAVVSQGKIKVVSD 212 (213)
T ss_pred hcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCeEEEEECCeEEEecC
Confidence 999999999999999999999999999998753 689999999999876 489999999999998874
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found. |
| >COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-41 Score=326.82 Aligned_cols=224 Identities=26% Similarity=0.487 Sum_probs=188.0
Q ss_pred CcEEEEEEEEECCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHHhCCCCCCcEEEECCeeCCCCCHHHH-hhh
Q 001411 204 GQIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWL-REQ 282 (1082)
Q Consensus 204 ~~i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~-~~~ 282 (1082)
..+..+|+.++|.++ ++++++||++++||+|++.||||+||||.+.++.|+.+|++|+|.+||.|++.++.... |-.
T Consensus 3 ~~L~a~~l~K~y~kr--~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d~G~i~ld~~diT~lPm~~RArlG 80 (243)
T COG1137 3 STLVAENLAKSYKKR--KVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKRARLG 80 (243)
T ss_pred cEEEehhhhHhhCCe--eeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecCCceEEECCcccccCChHHHhhcC
Confidence 357889999999754 49999999999999999999999999999999999999999999999999999987654 556
Q ss_pred ceEEccCCCcChh-cHHHHHhcCCCCCCHHHHHHHHHHhchHHHHhcCCCCccccccCCCCCCChHHHHHHHHHHhcccC
Q 001411 283 MGLVSQEPALFAT-SIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRN 361 (1082)
Q Consensus 283 i~~v~Q~~~l~~~-ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~lp~g~~t~~g~~g~~LSgGqkqri~lARal~~~ 361 (1082)
|||+||+|.+|.+ ||+|||..-.+... .....+.+...+++.++.+ .+...-...+..||||||+|+.|||||..+
T Consensus 81 igYLpQE~SIFr~LtV~dNi~~vlE~~~-~d~~~~~~~~~l~~LL~ef--~i~hlr~~~a~sLSGGERRR~EIARaLa~~ 157 (243)
T COG1137 81 IGYLPQEASIFRKLTVEDNIMAVLEIRE-KDLKKAERKEELDALLEEF--HITHLRDSKAYSLSGGERRRVEIARALAAN 157 (243)
T ss_pred cccccccchHhhcCcHHHHHHHHHhhhh-cchhHHHHHHHHHHHHHHh--chHHHhcCcccccccchHHHHHHHHHHhcC
Confidence 9999999999988 99999986543211 1111122222233334433 556666778899999999999999999999
Q ss_pred CCeeEEeCcccCCCHHHHHHHHHHHHHHcC-CCeEEEEccCcc-ccccCCEEEEEeCCEEEEecCchhhhhcC
Q 001411 362 PKILLLDEATSALDAESELIVQRALEKIMS-NRTTIVVAHRLS-TVRDVDTIMVLKNGQVVESGTHVDLISKG 432 (1082)
Q Consensus 362 ~~illlDEpts~LD~~~~~~i~~~l~~~~~-~~t~i~vtH~~~-~~~~~d~i~~l~~G~i~~~g~~~~l~~~~ 432 (1082)
|+.++||||++++||.+...|++.++.++. |.-|++.-|+.. ++.-|||.+++.+|++..+|+++|+.++.
T Consensus 158 P~fiLLDEPFAGVDPiaV~dIq~iI~~L~~rgiGvLITDHNVREtL~i~dRaYIi~~G~vla~G~p~ei~~n~ 230 (243)
T COG1137 158 PKFILLDEPFAGVDPIAVIDIQRIIKHLKDRGIGVLITDHNVRETLDICDRAYIISDGKVLAEGSPEEIVNNE 230 (243)
T ss_pred CCEEEecCCccCCCchhHHHHHHHHHHHHhCCceEEEccccHHHHHhhhheEEEEecCeEEecCCHHHHhcCh
Confidence 999999999999999999999999988864 678888889875 57889999999999999999999998753
|
|
| >TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-40 Score=365.62 Aligned_cols=204 Identities=25% Similarity=0.452 Sum_probs=171.4
Q ss_pred ECCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHHhCCCCCCcEEEECCeeCCCCCHHHHhhhceEEccCCCcC
Q 001411 214 AYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGLVSQEPALF 293 (1082)
Q Consensus 214 ~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~ 293 (1082)
+|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. ....+++.+||++|++.++
T Consensus 2 ~y~~--~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~-~~~~~~~~i~~~~q~~~~~ 78 (302)
T TIGR01188 2 VYGD--FKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVR-EPRKVRRSIGIVPQYASVD 78 (302)
T ss_pred eeCC--eeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccc-CHHHHHhhcEEecCCCCCC
Confidence 4543 349999999999999999999999999999999999999999999999999865 3456788899999999998
Q ss_pred hh-cHHHHHhcCCCC--CCH----HHHHHHHHHhchHHHHhcCCCCccccccCCCCCCChHHHHHHHHHHhcccCCCeeE
Q 001411 294 AT-SIANNILLGKED--ASM----DRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILL 366 (1082)
Q Consensus 294 ~~-ti~~ni~~g~~~--~~~----~~~~~~~~~~~~~~~i~~lp~g~~t~~g~~g~~LSgGqkqri~lARal~~~~~ill 366 (1082)
+. |++||+.+.... .+. +++.++++..+ +.........+||||||||++|||||+.+|++||
T Consensus 79 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~-----------l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lll 147 (302)
T TIGR01188 79 EDLTGRENLEMMGRLYGLPKDEAEERAEELLELFE-----------LGEAADRPVGTYSGGMRRRLDIAASLIHQPDVLF 147 (302)
T ss_pred CCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcC-----------ChhHhCCchhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 76 999999864211 111 22333333333 3333344556899999999999999999999999
Q ss_pred EeCcccCCCHHHHHHHHHHHHHHc-CCCeEEEEccCcccccc-CCEEEEEeCCEEEEecCchhhhhc
Q 001411 367 LDEATSALDAESELIVQRALEKIM-SNRTTIVVAHRLSTVRD-VDTIMVLKNGQVVESGTHVDLISK 431 (1082)
Q Consensus 367 lDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 431 (1082)
|||||++||+.+.+.+.+.|+++. +++|+|++||+++.+.. ||+|++|++|++++.|+++++.+.
T Consensus 148 LDEPt~gLD~~~~~~l~~~l~~~~~~g~tvi~~sH~~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~ 214 (302)
T TIGR01188 148 LDEPTTGLDPRTRRAIWDYIRALKEEGVTILLTTHYMEEADKLCDRIAIIDHGRIIAEGTPEELKRR 214 (302)
T ss_pred EeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHHHHh
Confidence 999999999999999999999875 47899999999999865 999999999999999999988654
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc. |
| >PRK14266 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-39 Score=355.58 Aligned_cols=218 Identities=31% Similarity=0.502 Sum_probs=184.0
Q ss_pred cEEEEEEEEECCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHHhCCC-----CCCcEEEECCeeCCCC--CHH
Q 001411 205 QIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYE-----PTSGKILLDGHDLKSL--QLK 277 (1082)
Q Consensus 205 ~i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~-----~~~G~i~~~g~~~~~~--~~~ 277 (1082)
.++++||++.|++ .++|+|+||+|++||+++|+||||||||||+++|+|+.+ |++|+|.+||.++... +..
T Consensus 3 ~l~~~~v~~~~~~--~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~ 80 (250)
T PRK14266 3 RIEVENLNTYFDD--AHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVDVV 80 (250)
T ss_pred EEEEEeEEEEeCC--eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcccccccHH
Confidence 3789999999974 349999999999999999999999999999999999864 4899999999998653 455
Q ss_pred HHhhhceEEccCCCcChhcHHHHHhcCCCC---CCH----HHHHHHHHHhchHHHHhcCCCCccccccCCCCCCChHHHH
Q 001411 278 WLREQMGLVSQEPALFATSIANNILLGKED---ASM----DRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQ 350 (1082)
Q Consensus 278 ~~~~~i~~v~Q~~~l~~~ti~~ni~~g~~~---~~~----~~~~~~~~~~~~~~~i~~lp~g~~t~~g~~g~~LSgGqkq 350 (1082)
.+++.++|++|++.+|+.|++||+.++... .+. +++.++++..++.+++.. ..+..+..|||||||
T Consensus 81 ~~~~~i~~~~q~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~-------~~~~~~~~LS~Gq~q 153 (250)
T PRK14266 81 ELRKKVGMVFQKPNPFPKSIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVKD-------KLDKSALGLSGGQQQ 153 (250)
T ss_pred HHhhheEEEecCCccCcchHHHHHHhHHhhcCCCCHHHHHHHHHHHHHHcCCchhHHH-------HHhCCcccCCHHHHH
Confidence 678899999999999999999999875321 111 234445555555443321 234567789999999
Q ss_pred HHHHHHhcccCCCeeEEeCcccCCCHHHHHHHHHHHHHHcCCCeEEEEccCcccccc-CCEEEEEeCCEEEEecCchhhh
Q 001411 351 RIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRD-VDTIMVLKNGQVVESGTHVDLI 429 (1082)
Q Consensus 351 ri~lARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~ 429 (1082)
|++|||||+++|+++||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+.. +|++++|++|++++.|+++++.
T Consensus 154 rv~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~~~~i~~l~~G~i~~~g~~~~~~ 233 (250)
T PRK14266 154 RLCIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKLKEDYTIVIVTHNMQQATRVSKYTSFFLNGEIIESGLTDQIF 233 (250)
T ss_pred HHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEECCHHHHHhhcCEEEEEECCeEEEeCCHHHHH
Confidence 999999999999999999999999999999999999988778899999999998866 7999999999999999998886
Q ss_pred hc
Q 001411 430 SK 431 (1082)
Q Consensus 430 ~~ 431 (1082)
..
T Consensus 234 ~~ 235 (250)
T PRK14266 234 IN 235 (250)
T ss_pred hC
Confidence 44
|
|
| >PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-39 Score=366.27 Aligned_cols=225 Identities=23% Similarity=0.368 Sum_probs=181.0
Q ss_pred cEEEEEEEEECCCC--CCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHHhCCC----CCCcEEEECCeeCCCCCHHH
Q 001411 205 QIEFSEVCFAYPSR--PHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYE----PTSGKILLDGHDLKSLQLKW 278 (1082)
Q Consensus 205 ~i~~~~v~~~y~~~--~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~----~~~G~i~~~g~~~~~~~~~~ 278 (1082)
-++++|++++|+.. ...+|+|+||+|++||+++|+|+||||||||+++|+|+.+ |++|+|.++|+++...+...
T Consensus 3 ~L~v~~l~~~y~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~ 82 (330)
T PRK15093 3 LLDIRNLTIEFKTSDGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPRE 82 (330)
T ss_pred eEEEeeeEEEEeCCCCCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHHH
Confidence 37899999999632 2349999999999999999999999999999999999986 58999999999998877655
Q ss_pred Hh----hhceEEccCCC--cCh-hcHHHHHhcCCC---C-----CC----HHHHHHHHHHhchHHHHhcCCCCccccccC
Q 001411 279 LR----EQMGLVSQEPA--LFA-TSIANNILLGKE---D-----AS----MDRVIEAAKAANAHSFVEGLPDGYQTQVGE 339 (1082)
Q Consensus 279 ~~----~~i~~v~Q~~~--l~~-~ti~~ni~~g~~---~-----~~----~~~~~~~~~~~~~~~~i~~lp~g~~t~~g~ 339 (1082)
++ +.|+||+|+|. +.+ .||.+|+..... . .. .+++.+.++..++.+. ......
T Consensus 83 ~~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~--------~~~~~~ 154 (330)
T PRK15093 83 RRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDH--------KDAMRS 154 (330)
T ss_pred HHHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCCh--------HHHHhC
Confidence 43 47999999996 333 389999864210 0 01 1233444444444211 012344
Q ss_pred CCCCCChHHHHHHHHHHhcccCCCeeEEeCcccCCCHHHHHHHHHHHHHHcC--CCeEEEEccCcccccc-CCEEEEEeC
Q 001411 340 GGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMS--NRTTIVVAHRLSTVRD-VDTIMVLKN 416 (1082)
Q Consensus 340 ~g~~LSgGqkqri~lARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~vtH~~~~~~~-~d~i~~l~~ 416 (1082)
...+|||||||||+|||||+.+|++|||||||++||+.+...+.+.|+++.+ +.|+|+|||+++.+.. ||+|++|++
T Consensus 155 ~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl~~v~~~~dri~vm~~ 234 (330)
T PRK15093 155 FPYELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQMLSQWADKINVLYC 234 (330)
T ss_pred CchhCCHHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEEC
Confidence 4568999999999999999999999999999999999999999999998754 7899999999999965 999999999
Q ss_pred CEEEEecCchhhhhcC-chhHH
Q 001411 417 GQVVESGTHVDLISKG-GEYAA 437 (1082)
Q Consensus 417 G~i~~~g~~~~l~~~~-~~~~~ 437 (1082)
|+|++.|+.+++..+. ..|.+
T Consensus 235 G~ive~g~~~~i~~~p~~~y~~ 256 (330)
T PRK15093 235 GQTVETAPSKELVTTPHHPYTQ 256 (330)
T ss_pred CEEEEECCHHHHHhCCCCHHHH
Confidence 9999999999987653 34544
|
|
| >PRK14263 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-39 Score=355.44 Aligned_cols=218 Identities=29% Similarity=0.439 Sum_probs=185.2
Q ss_pred cEEEEEEEEECCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHHhCCCC-----CCcEEEECCeeCCCC--CHH
Q 001411 205 QIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEP-----TSGKILLDGHDLKSL--QLK 277 (1082)
Q Consensus 205 ~i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~-----~~G~i~~~g~~~~~~--~~~ 277 (1082)
.+.+++.+++|++ ..+|+|+||++++||+++|+|+||||||||+++|+|+++| ++|+|.++|+++... +..
T Consensus 8 ~~~~~~~~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~ 85 (261)
T PRK14263 8 VMDCKLDKIFYGN--FMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDPV 85 (261)
T ss_pred eEEEEeEEEEeCC--EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccccccchH
Confidence 5889999999964 3499999999999999999999999999999999999986 799999999998643 344
Q ss_pred HHhhhceEEccCCCcChhcHHHHHhcCCCC-----CCHHHHHHHHHHhchHHHHhcCCCCccccccCCCCCCChHHHHHH
Q 001411 278 WLREQMGLVSQEPALFATSIANNILLGKED-----ASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRI 352 (1082)
Q Consensus 278 ~~~~~i~~v~Q~~~l~~~ti~~ni~~g~~~-----~~~~~~~~~~~~~~~~~~i~~lp~g~~t~~g~~g~~LSgGqkqri 352 (1082)
.+++.++|++|++++|+.|+.||+.++... ...+++.++++..++.+.+. ...++...+||||||||+
T Consensus 86 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~-------~~~~~~~~~LS~G~~qrv 158 (261)
T PRK14263 86 VVRRYIGMVFQQPNPFSMSIFDNVAFGLRLNRYKGDLGDRVKHALQGAALWDEVK-------DKLKVSGLSLSGGQQQRL 158 (261)
T ss_pred hhhhceEEEecCCccccccHHHHHHHHHhhcCchHHHHHHHHHHHHHcCCchhhh-------hhhhCCcccCCHHHHHHH
Confidence 667889999999999989999999876421 11234555666555433332 233456778999999999
Q ss_pred HHHHhcccCCCeeEEeCcccCCCHHHHHHHHHHHHHHcCCCeEEEEccCccccc-cCCEEEEEe--------CCEEEEec
Q 001411 353 AIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVR-DVDTIMVLK--------NGQVVESG 423 (1082)
Q Consensus 353 ~lARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~vtH~~~~~~-~~d~i~~l~--------~G~i~~~g 423 (1082)
+|||||+++|++|||||||++||+.+...+.+.|.++.+++|+|++||+++.+. .||+|++|+ +|++++.|
T Consensus 159 ~laral~~~p~llllDEPtsgLD~~~~~~l~~~l~~~~~~~tii~isH~~~~i~~~~d~v~~l~~~~~~~~~~G~i~~~g 238 (261)
T PRK14263 159 CIARAIATEPEVLLLDEPCSALDPIATRRVEELMVELKKDYTIALVTHNMQQAIRVADTTAFFSVDISQGTRTGYLVEMG 238 (261)
T ss_pred HHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEecccccccCCceEEEeC
Confidence 999999999999999999999999999999999999877789999999999876 489999996 89999999
Q ss_pred Cchhhhhc
Q 001411 424 THVDLISK 431 (1082)
Q Consensus 424 ~~~~l~~~ 431 (1082)
+++++.+.
T Consensus 239 ~~~~~~~~ 246 (261)
T PRK14263 239 PTAQIFQN 246 (261)
T ss_pred CHHHHHhC
Confidence 99998754
|
|
| >cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-39 Score=332.79 Aligned_cols=171 Identities=58% Similarity=0.948 Sum_probs=161.3
Q ss_pred EEEEeEEEECCCCCCcccccceeEEeeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCccCCCCCHHHHhcceE
Q 001411 835 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRKIG 914 (1082)
Q Consensus 835 I~~~~Vs~~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR~~i~ 914 (1082)
|+++|++++|+.. ..++++|+||+|++||.++|+|+||||||||+++|.|+++|++|+|.++|.++...+...+|++++
T Consensus 1 l~~~~l~~~~~~~-~~~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (171)
T cd03228 1 IEFKNVSFSYPGR-PKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDLESLRKNIA 79 (171)
T ss_pred CEEEEEEEEcCCC-CcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhhhcCHHHHHhhEE
Confidence 4789999999732 236999999999999999999999999999999999999999999999999998888888899999
Q ss_pred EEcccCccccccHHHHhccCCCCCCHHHHHHHHHHhcHHHHHhhCcccccccccCCCCCCChhHHHHHHHHHHHccCCCE
Q 001411 915 LVQQEPALFSTTIYENIKYGNEDASEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSI 994 (1082)
Q Consensus 915 ~VpQdp~Lf~gTIreNl~~~~~~~~d~ei~~al~~a~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlaLARAlL~~~~I 994 (1082)
|+||+|.+|+.|+.||+ ||+|||||++||||++++|++
T Consensus 80 ~~~~~~~~~~~t~~e~l------------------------------------------LS~G~~~rl~la~al~~~p~l 117 (171)
T cd03228 80 YVPQDPFLFSGTIRENI------------------------------------------LSGGQRQRIAIARALLRDPPI 117 (171)
T ss_pred EEcCCchhccchHHHHh------------------------------------------hCHHHHHHHHHHHHHhcCCCE
Confidence 99999999999999998 999999999999999999999
Q ss_pred EEeeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhccCEEEEEeCCE
Q 001411 995 LLLDEATSALDTASENLIQEALDKLMEGRTTIMVAHRLSTIRNADKIAVLQQGK 1048 (1082)
Q Consensus 995 LlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~~DrI~Vl~~G~ 1048 (1082)
|||||||++||+.+.+.+.+.|++..+++|+|++||+++.+..||++++|++|+
T Consensus 118 lllDEP~~gLD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~~~~l~~g~ 171 (171)
T cd03228 118 LILDEATSALDPETEALILEALRALAKGKTVIVIAHRLSTIRDADRIIVLDDGR 171 (171)
T ss_pred EEEECCCcCCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHhCCEEEEEcCCC
Confidence 999999999999999999999998877899999999999998899999999985
|
They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() | |
| Query | 1082 | ||||
| 3g5u_A | 1284 | Structure Of P-Glycoprotein Reveals A Molecular Bas | 0.0 | ||
| 3g5u_A | 1284 | Structure Of P-Glycoprotein Reveals A Molecular Bas | 1e-106 | ||
| 3g60_A | 1284 | Structure Of P-Glycoprotein Reveals A Molecular Bas | 0.0 | ||
| 3g60_A | 1284 | Structure Of P-Glycoprotein Reveals A Molecular Bas | 1e-106 | ||
| 4f4c_A | 1321 | The Crystal Structure Of The Multi-Drug Transporter | 0.0 | ||
| 4f4c_A | 1321 | The Crystal Structure Of The Multi-Drug Transporter | 6e-98 | ||
| 4ayt_A | 595 | Structure Of The Human Mitochondrial Abc Transporte | 1e-94 | ||
| 4ayw_A | 619 | Structure Of The Human Mitochondrial Abc Transporte | 6e-94 | ||
| 3b5y_A | 582 | Crystal Structure Of Msba From Salmonella Typhimuri | 5e-70 | ||
| 3b5w_A | 582 | Crystal Structure Of Eschericia Coli Msba Length = | 7e-70 | ||
| 2hyd_A | 578 | Multidrug Abc Transporter Sav1866 Length = 578 | 2e-69 | ||
| 2hyd_A | 578 | Multidrug Abc Transporter Sav1866 Length = 578 | 1e-66 | ||
| 3qf4_B | 598 | Crystal Structure Of A Heterodimeric Abc Transporte | 1e-64 | ||
| 3b5x_A | 582 | Crystal Structure Of Msba From Vibrio Cholerae Leng | 5e-63 | ||
| 3b5x_A | 582 | Crystal Structure Of Msba From Vibrio Cholerae Leng | 5e-59 | ||
| 3nh6_A | 306 | Nucleotide Binding Domain Of Human Abcb6 (Apo Struc | 4e-62 | ||
| 2pmk_A | 243 | Crystal Structures Of An Isolated Abc-Atpase In Com | 9e-61 | ||
| 2pmk_A | 243 | Crystal Structures Of An Isolated Abc-Atpase In Com | 7e-60 | ||
| 1mt0_A | 241 | Atp-Binding Domain Of Haemolysin B From Escherichia | 1e-60 | ||
| 1mt0_A | 241 | Atp-Binding Domain Of Haemolysin B From Escherichia | 8e-60 | ||
| 2ff7_A | 247 | The Abc-Atpase Of The Abc-Transporter Hlyb In The A | 1e-60 | ||
| 2ff7_A | 247 | The Abc-Atpase Of The Abc-Transporter Hlyb In The A | 8e-60 | ||
| 3b5j_A | 243 | Crystal Structures Of The S504a Mutant Of An Isolat | 2e-60 | ||
| 3b5j_A | 243 | Crystal Structures Of The S504a Mutant Of An Isolat | 2e-59 | ||
| 2ffb_A | 247 | The Crystal Structure Of The Hlyb-Nbd E631q Mutant | 3e-60 | ||
| 2ffb_A | 247 | The Crystal Structure Of The Hlyb-Nbd E631q Mutant | 2e-59 | ||
| 3qf4_A | 587 | Crystal Structure Of A Heterodimeric Abc Transporte | 9e-60 | ||
| 1xef_A | 241 | Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DI | 2e-59 | ||
| 1xef_A | 241 | Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DI | 1e-58 | ||
| 2ffa_A | 247 | Crystal Structure Of Abc-Atpase H662a Of The Abc-Tr | 2e-59 | ||
| 2ffa_A | 247 | Crystal Structure Of Abc-Atpase H662a Of The Abc-Tr | 1e-58 | ||
| 2ghi_A | 260 | Crystal Structure Of Plasmodium Yoelii Multidrug Re | 7e-58 | ||
| 2ghi_A | 260 | Crystal Structure Of Plasmodium Yoelii Multidrug Re | 3e-55 | ||
| 2ixf_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 3e-56 | ||
| 2ixf_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 2e-45 | ||
| 1jj7_A | 260 | Crystal Structure Of The C-Terminal Atpase Domain O | 2e-55 | ||
| 1jj7_A | 260 | Crystal Structure Of The C-Terminal Atpase Domain O | 4e-47 | ||
| 1mv5_A | 243 | Crystal Structure Of Lmra Atp-Binding Domain Length | 4e-55 | ||
| 1mv5_A | 243 | Crystal Structure Of Lmra Atp-Binding Domain Length | 2e-51 | ||
| 2ixe_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 5e-55 | ||
| 2ixe_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 3e-44 | ||
| 2ixg_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 1e-53 | ||
| 2ixg_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 7e-43 | ||
| 2it1_A | 362 | Structure Of Ph0203 Protein From Pyrococcus Horikos | 1e-26 | ||
| 3dhw_C | 343 | Crystal Structure Of Methionine Importer Metni Leng | 2e-26 | ||
| 3dhw_C | 343 | Crystal Structure Of Methionine Importer Metni Leng | 8e-25 | ||
| 3tui_C | 366 | Inward Facing Conformations Of The Metni Methionine | 5e-26 | ||
| 3tui_C | 366 | Inward Facing Conformations Of The Metni Methionine | 2e-24 | ||
| 2cbz_A | 237 | Structure Of The Human Multidrug Resistance Protein | 3e-25 | ||
| 3tuj_C | 366 | Inward Facing Conformations Of The Metni Methionine | 4e-25 | ||
| 3tuj_C | 366 | Inward Facing Conformations Of The Metni Methionine | 9e-24 | ||
| 3d31_A | 348 | Modbc From Methanosarcina Acetivorans Length = 348 | 4e-24 | ||
| 1l2t_A | 235 | Dimeric Structure Of Mj0796, A Bacterial Abc Transp | 1e-23 | ||
| 1f3o_A | 235 | Crystal Structure Of Mj0796 Atp-Binding Cassette Le | 2e-23 | ||
| 3gd7_A | 390 | Crystal Structure Of Human Nbd2 Complexed With N6- | 6e-23 | ||
| 3gd7_A | 390 | Crystal Structure Of Human Nbd2 Complexed With N6- | 8e-22 | ||
| 2olj_A | 263 | Abc Protein Artp In Complex With AdpMG2+ Length = 2 | 2e-22 | ||
| 2olj_A | 263 | Abc Protein Artp In Complex With AdpMG2+ Length = 2 | 6e-19 | ||
| 3tif_A | 235 | Dimeric Structure Of A Post-Hydrolysis State Of The | 3e-22 | ||
| 3c41_J | 242 | Abc Protein Artp In Complex With Amp-PnpMG2+ Length | 3e-22 | ||
| 3c41_J | 242 | Abc Protein Artp In Complex With Amp-PnpMG2+ Length | 7e-19 | ||
| 1z47_A | 355 | Structure Of The Atpase Subunit Cysa Of The Putativ | 2e-21 | ||
| 2yz2_A | 266 | Crystal Structure Of The Abc Transporter In The Cob | 2e-21 | ||
| 2yz2_A | 266 | Crystal Structure Of The Abc Transporter In The Cob | 1e-20 | ||
| 4hlu_A | 268 | Structure Of The Ecfa-a' Heterodimer Bound To Adp L | 2e-21 | ||
| 4hlu_A | 268 | Structure Of The Ecfa-a' Heterodimer Bound To Adp L | 3e-21 | ||
| 1r0z_A | 286 | Phosphorylated Cystic Fibrosis Transmembrane Conduc | 3e-21 | ||
| 1q3h_A | 286 | Mouse Cftr Nbd1 With Amp.Pnp Length = 286 | 3e-21 | ||
| 1xfa_A | 283 | Structure Of Nbd1 From Murine Cftr- F508r Mutant Le | 1e-20 | ||
| 1xf9_A | 283 | Structure Of Nbd1 From Murine Cftr- F508s Mutant Le | 1e-20 | ||
| 3si7_A | 285 | The Crystal Structure Of The Nbd1 Domain Of The Mou | 2e-20 | ||
| 1v43_A | 372 | Crystal Structure Of Atpase Subunit Of Abc Sugar Tr | 5e-20 | ||
| 1vci_A | 373 | Crystal Structure Of The Atp-binding Cassette Of Mu | 5e-20 | ||
| 2pze_A | 229 | Minimal Human Cftr First Nucleotide Binding Domain | 6e-20 | ||
| 2yyz_A | 359 | Crystal Structure Of Sugar Abc Transporter, Atp-Bin | 6e-20 | ||
| 1oxs_C | 353 | Crystal Structure Of Glcv, The Abc-Atpase Of The Gl | 7e-20 | ||
| 2pzg_A | 241 | Minimal Human Cftr First Nucleotide Binding Domain | 7e-20 | ||
| 1oxx_K | 353 | Crystal Structure Of Glcv, The Abc-Atpase Of The Gl | 3e-19 | ||
| 2bbt_A | 290 | Human Deltaf508 Nbd1 With Two Solublizing Mutations | 4e-19 | ||
| 2bbs_A | 290 | Human Deltaf508 Nbd1 With Three Solubilizing Mutati | 4e-19 | ||
| 1xmi_A | 291 | Crystal Structure Of Human F508a Nbd1 Domain With A | 4e-19 | ||
| 1xmi_A | 291 | Crystal Structure Of Human F508a Nbd1 Domain With A | 5e-19 | ||
| 2pzf_A | 228 | Minimal Human Cftr First Nucleotide Binding Domain | 5e-19 | ||
| 2onk_A | 240 | Abc Transporter Modbc In Complex With Its Binding P | 6e-19 | ||
| 1q12_A | 381 | Crystal Structure Of The Atp-bound E. Coli Malk Len | 6e-19 | ||
| 1q1b_A | 381 | Crystal Structure Of E. Coli Malk In The Nucleotide | 6e-19 | ||
| 2r6g_A | 381 | The Crystal Structure Of The E. Coli Maltose Transp | 2e-18 | ||
| 2bbo_A | 291 | Human Nbd1 With Phe508 Length = 291 | 5e-18 | ||
| 4hlu_D | 268 | Structure Of The Ecfa-a' Heterodimer Bound To Adp L | 1e-17 | ||
| 3gfo_A | 275 | Structure Of Cbio1 From Clostridium Perfringens: Pa | 2e-17 | ||
| 1xmj_A | 290 | Crystal Structure Of Human Deltaf508 Human Nbd1 Dom | 4e-17 | ||
| 3fvq_A | 359 | Crystal Structure Of The Nucleotide Binding Domain | 1e-16 | ||
| 2pcj_A | 224 | Crystal Structure Of Abc Transporter (Aq_297) From | 2e-16 | ||
| 2d62_A | 375 | Crystal Structure Of Multiple Sugar Binding Transpo | 2e-16 | ||
| 1g29_1 | 372 | Malk Length = 372 | 3e-16 | ||
| 4fwi_B | 334 | Crystal Structure Of The Nucleotide-binding Domain | 1e-14 | ||
| 2nq2_C | 253 | An Inward-Facing Conformation Of A Putative Metal-C | 3e-14 | ||
| 1b0u_A | 262 | Atp-Binding Subunit Of The Histidine Permease From | 7e-14 | ||
| 1vpl_A | 256 | Crystal Structure Of Abc Transporter Atp-binding Pr | 5e-13 | ||
| 1vpl_A | 256 | Crystal Structure Of Abc Transporter Atp-binding Pr | 1e-11 | ||
| 4g1u_C | 266 | X-Ray Structure Of The Bacterial Heme Transporter H | 2e-12 | ||
| 4g1u_C | 266 | X-Ray Structure Of The Bacterial Heme Transporter H | 6e-12 | ||
| 1g6h_A | 257 | Crystal Structure Of The Adp Conformation Of Mj1267 | 7e-12 | ||
| 1g6h_A | 257 | Crystal Structure Of The Adp Conformation Of Mj1267 | 3e-10 | ||
| 4dbl_C | 249 | Crystal Structure Of E159q Mutant Of Btucdf Length | 8e-12 | ||
| 3bk7_A | 607 | Structure Of The Complete Abce1RNAASE-L Inhibitor P | 9e-12 | ||
| 3bk7_A | 607 | Structure Of The Complete Abce1RNAASE-L Inhibitor P | 3e-07 | ||
| 3bk7_A | 607 | Structure Of The Complete Abce1RNAASE-L Inhibitor P | 3e-04 | ||
| 4fi3_C | 249 | Structure Of Vitamin B12 Transporter Btucd-F In A N | 9e-12 | ||
| 3j15_B | 593 | Model Of Ribosome-Bound Archaeal Pelota And Abce1 L | 1e-11 | ||
| 3j15_B | 593 | Model Of Ribosome-Bound Archaeal Pelota And Abce1 L | 4e-07 | ||
| 3j15_B | 593 | Model Of Ribosome-Bound Archaeal Pelota And Abce1 L | 4e-04 | ||
| 1gaj_A | 257 | Crystal Structure Of A Nucleotide-Free Atp-Binding | 2e-11 | ||
| 1gaj_A | 257 | Crystal Structure Of A Nucleotide-Free Atp-Binding | 7e-10 | ||
| 1g9x_A | 257 | Characterization Of The Twinning Structure Of Mj126 | 3e-11 | ||
| 1g9x_A | 257 | Characterization Of The Twinning Structure Of Mj126 | 3e-10 | ||
| 1ji0_A | 240 | Crystal Structure Analysis Of The Abc Transporter F | 4e-11 | ||
| 1yqt_A | 538 | Rnase-L Inhibitor Length = 538 | 6e-11 | ||
| 1yqt_A | 538 | Rnase-L Inhibitor Length = 538 | 4e-06 | ||
| 2qi9_C | 249 | Abc-Transporter Btucd In Complex With Its Periplasm | 8e-11 | ||
| 1l7v_C | 249 | Bacterial Abc Transporter Involved In B12 Uptake Le | 9e-11 | ||
| 2d2e_A | 250 | Crystal Structure Of Atypical Cytoplasmic Abc-Atpas | 5e-09 | ||
| 2d2e_A | 250 | Crystal Structure Of Atypical Cytoplasmic Abc-Atpas | 6e-07 | ||
| 2zu0_C | 267 | Crystal Structure Of Sufc-Sufd Complex Involved In | 3e-08 | ||
| 2zu0_C | 267 | Crystal Structure Of Sufc-Sufd Complex Involved In | 6e-08 | ||
| 2d3w_A | 248 | Crystal Structure Of Escherichia Coli Sufc, An Atpa | 3e-08 | ||
| 2d3w_A | 248 | Crystal Structure Of Escherichia Coli Sufc, An Atpa | 6e-08 | ||
| 2ihy_A | 279 | Structure Of The Staphylococcus Aureus Putative Atp | 5e-08 | ||
| 1sgw_A | 214 | Putative Abc Transporter (Atp-Binding Protein) From | 4e-07 | ||
| 1sgw_A | 214 | Putative Abc Transporter (Atp-Binding Protein) From | 3e-05 | ||
| 2pjz_A | 263 | The Crystal Structure Of Putative Cobalt Transport | 1e-05 | ||
| 2iwh_A | 986 | Structure Of Yeast Elongation Factor 3 In Complex W | 2e-05 | ||
| 2iw3_A | 986 | Elongation Factor 3 In Complex With Adp Length = 98 | 3e-05 | ||
| 2ix8_A | 976 | Model For Eef3 Bound To An 80s Ribosome Length = 97 | 3e-05 | ||
| 3ozx_A | 538 | Crystal Structure Of Abce1 Of Sulfolubus Solfataric | 2e-04 | ||
| 3ozx_A | 538 | Crystal Structure Of Abce1 Of Sulfolubus Solfataric | 3e-04 | ||
| 2vf7_A | 842 | Crystal Structure Of Uvra2 From Deinococcus Radiodu | 3e-04 | ||
| 3pih_A | 916 | T. Maritima Uvra In Complex With Fluorescein-Modifi | 3e-04 | ||
| 3uwx_A | 972 | Crystal Structure Of Uvra-Uvrb Complex Length = 972 | 6e-04 | ||
| 2r6f_A | 972 | Crystal Structure Of Bacillus Stearothermophilus Uv | 6e-04 | ||
| 3ux8_A | 670 | Crystal Structure Of Uvra Length = 670 | 8e-04 |
| >pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284 | Back alignment and structure |
|
| >pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284 | Back alignment and structure |
|
| >pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284 | Back alignment and structure |
|
| >pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284 | Back alignment and structure |
|
| >pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter Length = 1321 | Back alignment and structure |
|
| >pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter Length = 1321 | Back alignment and structure |
|
| >pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 Length = 595 | Back alignment and structure |
|
| >pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 (plate Form) Length = 619 | Back alignment and structure |
|
| >pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With Amppnp Length = 582 | Back alignment and structure |
|
| >pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba Length = 582 | Back alignment and structure |
|
| >pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866 Length = 578 | Back alignment and structure |
|
| >pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866 Length = 578 | Back alignment and structure |
|
| >pdb|3QF4|B Chain B, Crystal Structure Of A Heterodimeric Abc Transporter In Its Inward- Facing Conformation Length = 598 | Back alignment and structure |
|
| >pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae Length = 582 | Back alignment and structure |
|
| >pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae Length = 582 | Back alignment and structure |
|
| >pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure) Length = 306 | Back alignment and structure |
|
| >pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex With Tnp-Adp Length = 243 | Back alignment and structure |
|
| >pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex With Tnp-Adp Length = 243 | Back alignment and structure |
|
| >pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli Length = 241 | Back alignment and structure |
|
| >pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli Length = 241 | Back alignment and structure |
|
| >pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp Bound State Length = 247 | Back alignment and structure |
|
| >pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp Bound State Length = 247 | Back alignment and structure |
|
| >pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated Abc-atpase In Complex With Tnp-adp Length = 243 | Back alignment and structure |
|
| >pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated Abc-atpase In Complex With Tnp-adp Length = 243 | Back alignment and structure |
|
| >pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In Complex With Adp Length = 247 | Back alignment and structure |
|
| >pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In Complex With Adp Length = 247 | Back alignment and structure |
|
| >pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In Its Inward- Facing Conformation Length = 587 | Back alignment and structure |
|
| >pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF HLYB-Nbd Length = 241 | Back alignment and structure |
|
| >pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF HLYB-Nbd Length = 241 | Back alignment and structure |
|
| >pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The Abc-Transporter Hlyb In Complex With Adp Length = 247 | Back alignment and structure |
|
| >pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The Abc-Transporter Hlyb In Complex With Adp Length = 247 | Back alignment and structure |
|
| >pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug Resistance Protein 2 Length = 260 | Back alignment and structure |
|
| >pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug Resistance Protein 2 Length = 260 | Back alignment and structure |
|
| >pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (D645q, Q678h Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (D645q, Q678h Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human Tap1 Length = 260 | Back alignment and structure |
|
| >pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human Tap1 Length = 260 | Back alignment and structure |
|
| >pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain Length = 243 | Back alignment and structure |
|
| >pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain Length = 243 | Back alignment and structure |
|
| >pdb|2IXE|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (d645n Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|2IXE|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (d645n Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|2IXG|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (S621a, G622v, D645n Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|2IXG|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (S621a, G622v, D645n Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii Length = 362 | Back alignment and structure |
|
| >pdb|3DHW|C Chain C, Crystal Structure Of Methionine Importer Metni Length = 343 | Back alignment and structure |
|
| >pdb|3DHW|C Chain C, Crystal Structure Of Methionine Importer Metni Length = 343 | Back alignment and structure |
|
| >pdb|3TUI|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc Transporter: Cy5 Native Crystal Form Length = 366 | Back alignment and structure |
|
| >pdb|3TUI|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc Transporter: Cy5 Native Crystal Form Length = 366 | Back alignment and structure |
|
| >pdb|2CBZ|A Chain A, Structure Of The Human Multidrug Resistance Protein 1 Nucleotide Binding Domain 1 Length = 237 | Back alignment and structure |
|
| >pdb|3TUJ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc Transporter: Dm Crystal Form Length = 366 | Back alignment and structure |
|
| >pdb|3TUJ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc Transporter: Dm Crystal Form Length = 366 | Back alignment and structure |
|
| >pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans Length = 348 | Back alignment and structure |
|
| >pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter Cassette Length = 235 | Back alignment and structure |
|
| >pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette Length = 235 | Back alignment and structure |
|
| >pdb|3GD7|A Chain A, Crystal Structure Of Human Nbd2 Complexed With N6- Phenylethyl-Atp (P-Atp) Length = 390 | Back alignment and structure |
|
| >pdb|3GD7|A Chain A, Crystal Structure Of Human Nbd2 Complexed With N6- Phenylethyl-Atp (P-Atp) Length = 390 | Back alignment and structure |
|
| >pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+ Length = 263 | Back alignment and structure |
|
| >pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+ Length = 263 | Back alignment and structure |
|
| >pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The Atp-Binding Cassette Mj0796 Bound To Adp And Pi Length = 235 | Back alignment and structure |
|
| >pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+ Length = 242 | Back alignment and structure |
|
| >pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+ Length = 242 | Back alignment and structure |
|
| >pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative Sulfate Atp-Binding Cassette (Abc) Transporter From Alicyclobacillus Acidocaldarius Length = 355 | Back alignment and structure |
|
| >pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt Transport System Length = 266 | Back alignment and structure |
|
| >pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt Transport System Length = 266 | Back alignment and structure |
|
| >pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp Length = 268 | Back alignment and structure |
|
| >pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp Length = 268 | Back alignment and structure |
|
| >pdb|1R0Z|A Chain A, Phosphorylated Cystic Fibrosis Transmembrane Conductance Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1) With Atp Length = 286 | Back alignment and structure |
|
| >pdb|1Q3H|A Chain A, Mouse Cftr Nbd1 With Amp.Pnp Length = 286 | Back alignment and structure |
|
| >pdb|1XFA|A Chain A, Structure Of Nbd1 From Murine Cftr- F508r Mutant Length = 283 | Back alignment and structure |
|
| >pdb|1XF9|A Chain A, Structure Of Nbd1 From Murine Cftr- F508s Mutant Length = 283 | Back alignment and structure |
|
| >pdb|3SI7|A Chain A, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr Protein, Deltaf508 Mutant Length = 285 | Back alignment and structure |
|
| >pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar Transporter Length = 372 | Back alignment and structure |
|
| >pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of Multisugar Transporter From Pyrococcus Horikoshii Ot3 Complexed With Atp Length = 373 | Back alignment and structure |
|
| >pdb|2PZE|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Head-To-Tail Dimer Length = 229 | Back alignment and structure |
|
| >pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding Protein Length = 359 | Back alignment and structure |
|
| >pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc Transporter From Sulfolobus Solfataricus Length = 353 | Back alignment and structure |
|
| >pdb|2PZG|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Monomer Length = 241 | Back alignment and structure |
|
| >pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc Transporter From Sulfolobus Solfataricus Length = 353 | Back alignment and structure |
|
| >pdb|2BBT|A Chain A, Human Deltaf508 Nbd1 With Two Solublizing Mutations. Length = 290 | Back alignment and structure |
|
| >pdb|2BBS|A Chain A, Human Deltaf508 Nbd1 With Three Solubilizing Mutations Length = 290 | Back alignment and structure |
|
| >pdb|1XMI|A Chain A, Crystal Structure Of Human F508a Nbd1 Domain With Atp Length = 291 | Back alignment and structure |
|
| >pdb|1XMI|A Chain A, Crystal Structure Of Human F508a Nbd1 Domain With Atp Length = 291 | Back alignment and structure |
|
| >pdb|2PZF|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Head-To-Tail Dimer With Delta F508 Length = 228 | Back alignment and structure |
|
| >pdb|2ONK|A Chain A, Abc Transporter Modbc In Complex With Its Binding Protein Moda Length = 240 | Back alignment and structure |
|
| >pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk Length = 381 | Back alignment and structure |
|
| >pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free Form Length = 381 | Back alignment and structure |
|
| >pdb|2R6G|A Chain A, The Crystal Structure Of The E. Coli Maltose Transporter Length = 381 | Back alignment and structure |
|
| >pdb|2BBO|A Chain A, Human Nbd1 With Phe508 Length = 291 | Back alignment and structure |
|
| >pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp Length = 268 | Back alignment and structure |
|
| >pdb|3GFO|A Chain A, Structure Of Cbio1 From Clostridium Perfringens: Part Of The Abc Transporter Complex Cbionq Length = 275 | Back alignment and structure |
|
| >pdb|1XMJ|A Chain A, Crystal Structure Of Human Deltaf508 Human Nbd1 Domain With Atp Length = 290 | Back alignment and structure |
|
| >pdb|3FVQ|A Chain A, Crystal Structure Of The Nucleotide Binding Domain Fbpc Complexed With Atp Length = 359 | Back alignment and structure |
|
| >pdb|2PCJ|A Chain A, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex Aeolicus Vf5 Length = 224 | Back alignment and structure |
|
| >pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport Atp- Binding Protein Length = 375 | Back alignment and structure |
|
| >pdb|1G29|1 Chain 1, Malk Length = 372 | Back alignment and structure |
|
| >pdb|4FWI|B Chain B, Crystal Structure Of The Nucleotide-binding Domain Of A Dipeptide Abc Transporter Length = 334 | Back alignment and structure |
|
| >pdb|2NQ2|C Chain C, An Inward-Facing Conformation Of A Putative Metal-Chelate Type Abc Transporter. Length = 253 | Back alignment and structure |
|
| >pdb|1B0U|A Chain A, Atp-Binding Subunit Of The Histidine Permease From Salmonella Typhimurium Length = 262 | Back alignment and structure |
|
| >pdb|1VPL|A Chain A, Crystal Structure Of Abc Transporter Atp-binding Protein (tm0544) From Thermotoga Maritima At 2.10 A Resolution Length = 256 | Back alignment and structure |
|
| >pdb|1VPL|A Chain A, Crystal Structure Of Abc Transporter Atp-binding Protein (tm0544) From Thermotoga Maritima At 2.10 A Resolution Length = 256 | Back alignment and structure |
|
| >pdb|4G1U|C Chain C, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv From Yersinia Pestis Length = 266 | Back alignment and structure |
|
| >pdb|4G1U|C Chain C, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv From Yersinia Pestis Length = 266 | Back alignment and structure |
|
| >pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformation Of Mj1267, An Atp- Binding Cassette Of An Abc Transporter Length = 257 | Back alignment and structure |
|
| >pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformation Of Mj1267, An Atp- Binding Cassette Of An Abc Transporter Length = 257 | Back alignment and structure |
|
| >pdb|4DBL|C Chain C, Crystal Structure Of E159q Mutant Of Btucdf Length = 249 | Back alignment and structure |
|
| >pdb|3BK7|A Chain A, Structure Of The Complete Abce1RNAASE-L Inhibitor Protein From Pyrococcus Abysii Length = 607 | Back alignment and structure |
|
| >pdb|3BK7|A Chain A, Structure Of The Complete Abce1RNAASE-L Inhibitor Protein From Pyrococcus Abysii Length = 607 | Back alignment and structure |
|
| >pdb|3BK7|A Chain A, Structure Of The Complete Abce1RNAASE-L Inhibitor Protein From Pyrococcus Abysii Length = 607 | Back alignment and structure |
|
| >pdb|4FI3|C Chain C, Structure Of Vitamin B12 Transporter Btucd-F In A Nucleotide-Bound State Length = 249 | Back alignment and structure |
|
| >pdb|3J15|B Chain B, Model Of Ribosome-Bound Archaeal Pelota And Abce1 Length = 593 | Back alignment and structure |
|
| >pdb|3J15|B Chain B, Model Of Ribosome-Bound Archaeal Pelota And Abce1 Length = 593 | Back alignment and structure |
|
| >pdb|3J15|B Chain B, Model Of Ribosome-Bound Archaeal Pelota And Abce1 Length = 593 | Back alignment and structure |
|
| >pdb|1GAJ|A Chain A, Crystal Structure Of A Nucleotide-Free Atp-Binding Cassette From An Abc Transporter Length = 257 | Back alignment and structure |
|
| >pdb|1GAJ|A Chain A, Crystal Structure Of A Nucleotide-Free Atp-Binding Cassette From An Abc Transporter Length = 257 | Back alignment and structure |
|
| >pdb|1G9X|A Chain A, Characterization Of The Twinning Structure Of Mj1267, An Atp-Binding Cassette Of An Abc Transporter Length = 257 | Back alignment and structure |
|
| >pdb|1G9X|A Chain A, Characterization Of The Twinning Structure Of Mj1267, An Atp-Binding Cassette Of An Abc Transporter Length = 257 | Back alignment and structure |
|
| >pdb|1JI0|A Chain A, Crystal Structure Analysis Of The Abc Transporter From Thermotoga Maritima Length = 240 | Back alignment and structure |
|
| >pdb|1YQT|A Chain A, Rnase-L Inhibitor Length = 538 | Back alignment and structure |
|
| >pdb|1YQT|A Chain A, Rnase-L Inhibitor Length = 538 | Back alignment and structure |
|
| >pdb|2QI9|C Chain C, Abc-Transporter Btucd In Complex With Its Periplasmic Binding Protein Btuf Length = 249 | Back alignment and structure |
|
| >pdb|1L7V|C Chain C, Bacterial Abc Transporter Involved In B12 Uptake Length = 249 | Back alignment and structure |
|
| >pdb|2D2E|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc From Thermus Thermophilus Hb8 Length = 250 | Back alignment and structure |
|
| >pdb|2D2E|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc From Thermus Thermophilus Hb8 Length = 250 | Back alignment and structure |
|
| >pdb|2ZU0|C Chain C, Crystal Structure Of Sufc-Sufd Complex Involved In The Iron- Sulfur Cluster Biosynthesis Length = 267 | Back alignment and structure |
|
| >pdb|2ZU0|C Chain C, Crystal Structure Of Sufc-Sufd Complex Involved In The Iron- Sulfur Cluster Biosynthesis Length = 267 | Back alignment and structure |
|
| >pdb|2D3W|A Chain A, Crystal Structure Of Escherichia Coli Sufc, An Atpase Compenent Of The Suf Iron-Sulfur Cluster Assembly Machinery Length = 248 | Back alignment and structure |
|
| >pdb|2D3W|A Chain A, Crystal Structure Of Escherichia Coli Sufc, An Atpase Compenent Of The Suf Iron-Sulfur Cluster Assembly Machinery Length = 248 | Back alignment and structure |
|
| >pdb|2IHY|A Chain A, Structure Of The Staphylococcus Aureus Putative Atpase Subunit Of An Atp-Binding Cassette (Abc) Transporter Length = 279 | Back alignment and structure |
|
| >pdb|1SGW|A Chain A, Putative Abc Transporter (Atp-Binding Protein) From Pyrococcus Furiosus Pfu-867808-001 Length = 214 | Back alignment and structure |
|
| >pdb|1SGW|A Chain A, Putative Abc Transporter (Atp-Binding Protein) From Pyrococcus Furiosus Pfu-867808-001 Length = 214 | Back alignment and structure |
|
| >pdb|2PJZ|A Chain A, The Crystal Structure Of Putative Cobalt Transport Atp- Binding Protein (cbio-2), St1066 Length = 263 | Back alignment and structure |
|
| >pdb|2IWH|A Chain A, Structure Of Yeast Elongation Factor 3 In Complex With Adpnp Length = 986 | Back alignment and structure |
|
| >pdb|2IW3|A Chain A, Elongation Factor 3 In Complex With Adp Length = 986 | Back alignment and structure |
|
| >pdb|2IX8|A Chain A, Model For Eef3 Bound To An 80s Ribosome Length = 976 | Back alignment and structure |
|
| >pdb|3OZX|A Chain A, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus (-Fes Domain) Length = 538 | Back alignment and structure |
|
| >pdb|3OZX|A Chain A, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus (-Fes Domain) Length = 538 | Back alignment and structure |
|
| >pdb|2VF7|A Chain A, Crystal Structure Of Uvra2 From Deinococcus Radiodurans Length = 842 | Back alignment and structure |
|
| >pdb|3PIH|A Chain A, T. Maritima Uvra In Complex With Fluorescein-Modified Dna Length = 916 | Back alignment and structure |
|
| >pdb|3UWX|A Chain A, Crystal Structure Of Uvra-Uvrb Complex Length = 972 | Back alignment and structure |
|
| >pdb|2R6F|A Chain A, Crystal Structure Of Bacillus Stearothermophilus Uvra Length = 972 | Back alignment and structure |
|
| >pdb|3UX8|A Chain A, Crystal Structure Of Uvra Length = 670 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 1082 | |||
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 0.0 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 0.0 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 0.0 | |
| 2yl4_A | 595 | ATP-binding cassette SUB-family B member 10, mitoc | 0.0 | |
| 2yl4_A | 595 | ATP-binding cassette SUB-family B member 10, mitoc | 0.0 | |
| 3b60_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 1e-172 | |
| 3b60_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 1e-156 | |
| 3b5x_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 1e-169 | |
| 3b5x_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 1e-153 | |
| 4a82_A | 578 | Cystic fibrosis transmembrane conductance regulat; | 1e-166 | |
| 4a82_A | 578 | Cystic fibrosis transmembrane conductance regulat; | 1e-149 | |
| 2ixe_A | 271 | Antigen peptide transporter 1; ABC ATPase, hydrola | 1e-153 | |
| 2ixe_A | 271 | Antigen peptide transporter 1; ABC ATPase, hydrola | 1e-150 | |
| 2ff7_A | 247 | Alpha-hemolysin translocation ATP-binding protein | 1e-149 | |
| 2ff7_A | 247 | Alpha-hemolysin translocation ATP-binding protein | 1e-145 | |
| 1mv5_A | 243 | LMRA, multidrug resistance ABC transporter ATP-bin | 1e-138 | |
| 1mv5_A | 243 | LMRA, multidrug resistance ABC transporter ATP-bin | 1e-138 | |
| 2ghi_A | 260 | Transport protein; multidrug resistance protein, M | 1e-138 | |
| 2ghi_A | 260 | Transport protein; multidrug resistance protein, M | 1e-131 | |
| 3qf4_B | 598 | Uncharacterized ABC transporter ATP-binding prote | 1e-131 | |
| 3qf4_B | 598 | Uncharacterized ABC transporter ATP-binding prote | 1e-115 | |
| 3nh6_A | 306 | ATP-binding cassette SUB-family B member 6, mitoc; | 1e-131 | |
| 3nh6_A | 306 | ATP-binding cassette SUB-family B member 6, mitoc; | 1e-123 | |
| 3qf4_A | 587 | ABC transporter, ATP-binding protein; multidrug tr | 1e-115 | |
| 3qf4_A | 587 | ABC transporter, ATP-binding protein; multidrug tr | 1e-105 | |
| 3gd7_A | 390 | Fusion complex of cystic fibrosis transmembrane co | 2e-65 | |
| 3gd7_A | 390 | Fusion complex of cystic fibrosis transmembrane co | 1e-63 | |
| 2pze_A | 229 | Cystic fibrosis transmembrane conductance regulat; | 8e-51 | |
| 2pze_A | 229 | Cystic fibrosis transmembrane conductance regulat; | 8e-48 | |
| 2cbz_A | 237 | Multidrug resistance-associated protein 1; ABC pro | 2e-49 | |
| 2cbz_A | 237 | Multidrug resistance-associated protein 1; ABC pro | 1e-44 | |
| 2bbs_A | 290 | Cystic fibrosis transmembrane conductance regulato | 4e-48 | |
| 2bbs_A | 290 | Cystic fibrosis transmembrane conductance regulato | 5e-44 | |
| 2pjz_A | 263 | Hypothetical protein ST1066; ATP binding protein, | 1e-45 | |
| 2pjz_A | 263 | Hypothetical protein ST1066; ATP binding protein, | 8e-44 | |
| 3gfo_A | 275 | Cobalt import ATP-binding protein CBIO 1; structur | 1e-45 | |
| 3gfo_A | 275 | Cobalt import ATP-binding protein CBIO 1; structur | 3e-38 | |
| 2yz2_A | 266 | Putative ABC transporter ATP-binding protein TM_0; | 3e-45 | |
| 2yz2_A | 266 | Putative ABC transporter ATP-binding protein TM_0; | 2e-38 | |
| 3tui_C | 366 | Methionine import ATP-binding protein METN; ABC-tr | 3e-43 | |
| 3tui_C | 366 | Methionine import ATP-binding protein METN; ABC-tr | 7e-41 | |
| 2ihy_A | 279 | ABC transporter, ATP-binding protein; ATPase, ABC | 4e-43 | |
| 2ihy_A | 279 | ABC transporter, ATP-binding protein; ATPase, ABC | 3e-39 | |
| 2olj_A | 263 | Amino acid ABC transporter; ABC domain, ATPase, hy | 3e-37 | |
| 2olj_A | 263 | Amino acid ABC transporter; ABC domain, ATPase, hy | 4e-34 | |
| 2nq2_C | 253 | Hypothetical ABC transporter ATP-binding protein H | 4e-36 | |
| 2nq2_C | 253 | Hypothetical ABC transporter ATP-binding protein H | 4e-30 | |
| 1z47_A | 355 | CYSA, putative ABC-transporter ATP-binding protein | 6e-36 | |
| 1z47_A | 355 | CYSA, putative ABC-transporter ATP-binding protein | 7e-31 | |
| 2onk_A | 240 | Molybdate/tungstate ABC transporter, ATP-binding p | 1e-35 | |
| 2onk_A | 240 | Molybdate/tungstate ABC transporter, ATP-binding p | 7e-32 | |
| 2pcj_A | 224 | ABC transporter, lipoprotein-releasing system ATP- | 2e-35 | |
| 2pcj_A | 224 | ABC transporter, lipoprotein-releasing system ATP- | 1e-27 | |
| 1b0u_A | 262 | Histidine permease; ABC transporter, transport pro | 3e-35 | |
| 1b0u_A | 262 | Histidine permease; ABC transporter, transport pro | 1e-33 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 5e-35 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 2e-33 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 4e-31 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 2e-30 | |
| 3tif_A | 235 | Uncharacterized ABC transporter ATP-binding prote; | 6e-35 | |
| 3tif_A | 235 | Uncharacterized ABC transporter ATP-binding prote; | 2e-28 | |
| 3d31_A | 348 | Sulfate/molybdate ABC transporter, ATP-binding pro | 1e-34 | |
| 3d31_A | 348 | Sulfate/molybdate ABC transporter, ATP-binding pro | 2e-29 | |
| 3fvq_A | 359 | Fe(3+) IONS import ATP-binding protein FBPC; nucle | 6e-34 | |
| 3fvq_A | 359 | Fe(3+) IONS import ATP-binding protein FBPC; nucle | 1e-30 | |
| 1sgw_A | 214 | Putative ABC transporter; structural genomics, P p | 6e-34 | |
| 1sgw_A | 214 | Putative ABC transporter; structural genomics, P p | 2e-33 | |
| 1vpl_A | 256 | ABC transporter, ATP-binding protein; TM0544, stru | 1e-33 | |
| 1vpl_A | 256 | ABC transporter, ATP-binding protein; TM0544, stru | 2e-33 | |
| 2qi9_C | 249 | Vitamin B12 import ATP-binding protein BTUD; inner | 1e-33 | |
| 2qi9_C | 249 | Vitamin B12 import ATP-binding protein BTUD; inner | 7e-29 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 5e-33 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 2e-30 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 5e-30 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 1e-29 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 2e-32 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 7e-32 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 8e-30 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 2e-29 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 8e-32 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 6e-30 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 9e-30 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 2e-27 | |
| 1oxx_K | 353 | GLCV, glucose, ABC transporter, ATP binding protei | 4e-31 | |
| 1oxx_K | 353 | GLCV, glucose, ABC transporter, ATP binding protei | 8e-30 | |
| 2it1_A | 362 | 362AA long hypothetical maltose/maltodextrin trans | 7e-26 | |
| 2it1_A | 362 | 362AA long hypothetical maltose/maltodextrin trans | 3e-24 | |
| 2yyz_A | 359 | Sugar ABC transporter, ATP-binding protein; sugar | 4e-23 | |
| 2yyz_A | 359 | Sugar ABC transporter, ATP-binding protein; sugar | 2e-21 | |
| 1v43_A | 372 | Sugar-binding transport ATP-binding protein; ATPas | 6e-23 | |
| 1v43_A | 372 | Sugar-binding transport ATP-binding protein; ATPas | 2e-21 | |
| 1g29_1 | 372 | MALK, maltose transport protein MALK; ATPase, acti | 4e-22 | |
| 1g29_1 | 372 | MALK, maltose transport protein MALK; ATPase, acti | 2e-20 | |
| 1g6h_A | 257 | High-affinity branched-chain amino acid transport | 6e-21 | |
| 1g6h_A | 257 | High-affinity branched-chain amino acid transport | 2e-16 | |
| 3rlf_A | 381 | Maltose/maltodextrin import ATP-binding protein M; | 3e-19 | |
| 3rlf_A | 381 | Maltose/maltodextrin import ATP-binding protein M; | 2e-17 | |
| 1ji0_A | 240 | ABC transporter; ATP binding protein, structural g | 5e-16 | |
| 1ji0_A | 240 | ABC transporter; ATP binding protein, structural g | 2e-15 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 7e-16 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 4e-14 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 2e-10 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 3e-10 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 2e-07 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 2e-05 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 1e-12 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 6e-10 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 2e-09 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 2e-06 | |
| 2d2e_A | 250 | SUFC protein; ABC-ATPase, SUF protein, 310-helix, | 2e-12 | |
| 2d2e_A | 250 | SUFC protein; ABC-ATPase, SUF protein, 310-helix, | 2e-07 | |
| 2zu0_C | 267 | Probable ATP-dependent transporter SUFC; iron-sulf | 3e-12 | |
| 2zu0_C | 267 | Probable ATP-dependent transporter SUFC; iron-sulf | 1e-07 | |
| 3qkt_A | 339 | DNA double-strand break repair RAD50 ATPase; RECA- | 2e-10 | |
| 3qkt_A | 339 | DNA double-strand break repair RAD50 ATPase; RECA- | 9e-07 | |
| 1f2t_B | 148 | RAD50 ABC-ATPase; DNA double-strand break repair, | 3e-08 | |
| 1f2t_B | 148 | RAD50 ABC-ATPase; DNA double-strand break repair, | 7e-06 | |
| 3auy_A | 371 | DNA double-strand break repair RAD50 ATPase; DNA r | 2e-06 | |
| 3auy_A | 371 | DNA double-strand break repair RAD50 ATPase; DNA r | 3e-05 |
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 | Back alignment and structure |
|---|
Score = 1420 bits (3679), Expect = 0.0
Identities = 429/1087 (39%), Positives = 652/1087 (59%), Gaps = 18/1087 (1%)
Query: 4 GHALRYLSQFFVGFAVGFTSVWQLTLLTLAVVPLIAVAGGAYTITMSTLSEKGEAAYGEA 63
G + ++ FF GF +GFT W+LTL+ LA+ P++ ++ G + +S+ ++K AY +A
Sbjct: 187 GMFFQAMATFFGGFIIGFTRGWKLTLVILAISPVLGLSAGIWAKILSSFTDKELHAYAKA 246
Query: 64 GKVAEEIISQVRAVYAFVGEAKAIESYSHSLKEALKQGKKSGVAKGIGVGLTYGLLFCAW 123
G VAEE+++ +R V AF G+ K +E Y+++L+EA + G K + I +G + L++ ++
Sbjct: 247 GAVAEEVLAAIRTVIAFGGQKKELERYNNNLEEAKRLGIKKAITANISMGAAFLLIYASY 306
Query: 124 ALLLWYAGILVRHGDTNGGKAFTTIINVIFSGFALGQAAPNLAAIAKGKAAAANIISIIK 183
AL WY LV + + G+ T +V+ F++GQA+PN+ A A + AA + II
Sbjct: 307 ALAFWYGTSLVISKEYSIGQVLTVFFSVLIGAFSVGQASPNIEAFANARGAAYEVFKIID 366
Query: 184 ENSHSSERPGDDGITLPKLAGQIEFSEVCFAYPSRPHM-VFENLNFSVDAGKTFAFVGPS 242
S + G + G +EF + F+YPSR + + + LN V +G+T A VG S
Sbjct: 367 NKP-SIDSFSKSGHKPDNIQGNLEFKNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNS 425
Query: 243 GSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNIL 302
G GKST + ++QRLY+P G + +DG D++++ +++LRE +G+VSQEP LFAT+IA NI
Sbjct: 426 GCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLREIIGVVSQEPVLFATTIAENIR 485
Query: 303 LGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNP 362
G+ED +MD + +A K ANA+ F+ LP + T VGE G QLSGGQKQRIAIARA++RNP
Sbjct: 486 YGREDVTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALVRNP 545
Query: 363 KILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRDVDTIMVLKNGQVVES 422
KILLLDEATSALD ESE +VQ AL+K RTTIV+AHRLSTVR+ D I G +VE
Sbjct: 546 KILLLDEATSALDTESEAVVQAALDKAREGRTTIVIAHRLSTVRNADVIAGFDGGVIVEQ 605
Query: 423 GTHVDLISKGGEYAALVNLQSSEHLSNPSSI------------CYSGSSRYSSFRDFPSS 470
G H +L+ + G Y LV Q++ + + S S S R +
Sbjct: 606 GNHDELMREKGIYFKLVMTQTAGNEIELGNEACKSKDEIDNLDMSSKDSGSSLIRRRSTR 665
Query: 471 RRYDVEFESSKRRELQSSDQSFAPSPSIWELLKLNAAEWPYAVLGSVGAILAGMEAPLFA 530
+ + ++ + + P S W +LKLN+ EWPY V+G AI+ G P F+
Sbjct: 666 KSICGPHDQDRKLSTKEALDEDVPPASFWRILKLNSTEWPYFVVGIFCAIINGGLQPAFS 725
Query: 531 LGITHILTAFYSP-HDSQIKRVVDQVALIFVGLAVVTIPVYLLQHYFYTLMGEHLTARVR 589
+ + ++ F + ++ + +L+F+ L +++ + LQ + + GE LT R+R
Sbjct: 726 VIFSKVVGVFTNGGPPETQRQNSNLFSLLFLILGIISFITFFLQGFTFGKAGEILTKRLR 785
Query: 590 LSMFSAILSNEIGWFDLDENNTGLLISTLAADATLVRSALADRLSIIVQNVALTVTAFVI 649
+F ++L ++ WFD +N TG L + LA DA V+ A RL++I QN+A T +I
Sbjct: 786 YMVFKSMLRQDVSWFDDPKNTTGALTTRLANDAAQVKGATGSRLAVIFQNIANLGTGIII 845
Query: 650 AFILSWRLAAVVAASLPLLIGAFVAEQLFLKGFGGDYNRAYSRATSVAREAIANIRTVAA 709
+ I W+L ++ A +P++ A V E L G + + +A EAI N RTV +
Sbjct: 846 SLIYGWQLTLLLLAIVPIIAIAGVVEMKMLSGQALKDKKELEGSGKIATEAIENFRTVVS 905
Query: 710 YGIEKRISIQFASELSQPNKQALLRGHISGFGYGVSQLLSLCSYALGLWYASVLIKQKGS 769
E++ +A L P + A+ + H+ G + +Q + SYA + + L+ Q+
Sbjct: 906 LTREQKFETMYAQSLQIPYRNAMKKAHVFGITFSFTQAMMYFSYAAAFRFGAYLVTQQLM 965
Query: 770 NFGDIMKSFMVLIITALAVAETLALAPDIVKGSQALGPVFGILYRKTAIQPDDPASKEVT 829
F +++ F ++ A+AV + + APD K + + + I+ + I +
Sbjct: 966 TFENVLLVFSAIVFGAMAVGQVSSFAPDYAKATVSASHIIRIIEKTPEIDSYSTQGLKPN 1025
Query: 830 EIKGNIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDP 889
++GN++ V F YP RP I + + L+L+V G++LA+VG SG GKSTV+ L+ RFYDP
Sbjct: 1026 MLEGNVQFSGVVFNYPTRPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDP 1085
Query: 890 ISGTVLIDGYDIRTLNLRSLRRKIGLVQQEPALFSTTIYENIKYG--NEDASEIELMKAT 947
++G+V +DG +I+ LN++ LR ++G+V QEP LF +I ENI YG + S E+++A
Sbjct: 1086 MAGSVFLDGKEIKQLNVQWLRAQLGIVSQEPILFDCSIAENIAYGDNSRVVSYEEIVRAA 1145
Query: 948 KAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTA 1007
K AN H FI +P+ Y + VGD+G QLSGGQKQR+AIARA+++ P ILLLDEATSALDT
Sbjct: 1146 KEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTE 1205
Query: 1008 SENLIQEALDKLMEGRTTIMVAHRLSTIRNADKIAVLQQGKVAEIGSHEQLLRKENGIYK 1067
SE ++QEALDK EGRT I++AHRLSTI+NAD I V+Q GKV E G+H+QLL + GIY
Sbjct: 1206 SEKVVQEALDKAREGRTCIVIAHRLSTIQNADLIVVIQNGKVKEHGTHQQLLAQ-KGIYF 1264
Query: 1068 QLIRLQQ 1074
++ +Q
Sbjct: 1265 SMVSVQA 1271
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 | Back alignment and structure |
|---|
Score = 687 bits (1776), Expect = 0.0
Identities = 225/623 (36%), Positives = 346/623 (55%), Gaps = 21/623 (3%)
Query: 478 ESSKRRELQSSDQSFAPSPSIWELLKL-NAAEWPYAVLGSVGAILAGMEAPLFAL----- 531
S ++ + + P+ S+ + + + Y ++G++ AI+ G+ PL L
Sbjct: 15 FSKMGKKSKKEKKEKKPAVSVLTMFRYAGWLDRLYMLVGTLAAIIHGVALPLMMLIFGDM 74
Query: 532 ------------GITHILTAFYSPHDSQIKRVVDQVALIFVGLAVVTIPVYLLQHYFYTL 579
T++ A ++++ + A + G+ + V +Q F+ L
Sbjct: 75 TDSFASVGNVSKNSTNMSEADKRAMFAKLEEEMTTYAYYYTGIGAGVLIVAYIQVSFWCL 134
Query: 580 MGEHLTARVRLSMFSAILSNEIGWFDLDENNTGLLISTLAADATLVRSALADRLSIIVQN 639
++R F AI++ EIGWFD ++ G L + L D + + + D++ + Q
Sbjct: 135 AAGRQIHKIRQKFFHAIMNQEIGWFD--VHDVGELNTRLTDDVSKINEGIGDKIGMFFQA 192
Query: 640 VALTVTAFVIAFILSWRLAAVVAASLPLLIGAFVAEQLFLKGFGGDYNRAYSRATSVARE 699
+A F+I F W+L V+ A P+L + L F AY++A +VA E
Sbjct: 193 MATFFGGFIIGFTRGWKLTLVILAISPVLGLSAGIWAKILSSFTDKELHAYAKAGAVAEE 252
Query: 700 AIANIRTVAAYGIEKRISIQFASELSQPNKQALLRGHISGFGYGVSQLLSLCSYALGLWY 759
+A IRTV A+G +K+ ++ + L + + + + + G + LL SYAL WY
Sbjct: 253 VLAAIRTVIAFGGQKKELERYNNNLEEAKRLGIKKAITANISMGAAFLLIYASYALAFWY 312
Query: 760 ASVLIKQKGSNFGDIMKSFMVLIITALAVAETLALAPDIVKGSQALGPVFGILYRKTAIQ 819
+ L+ K + G ++ F ++I A +V + A VF I+ K +I
Sbjct: 313 GTSLVISKEYSIGQVLTVFFSVLIGAFSVGQASPNIEAFANARGAAYEVFKIIDNKPSID 372
Query: 820 PDDPASKEVTEIKGNIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTV 879
+ + I+GN+E +N+ F YP R ++ I + LNLKV +G+++A+VG SG GKST
Sbjct: 373 SFSKSGHKPDNIQGNLEFKNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTT 432
Query: 880 ISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRKIGLVQQEPALFSTTIYENIKYGNEDAS 939
+ L+ R YDP+ G V IDG DIRT+N+R LR IG+V QEP LF+TTI ENI+YG ED +
Sbjct: 433 VQLMQRLYDPLDGMVSIDGQDIRTINVRYLREIIGVVSQEPVLFATTIAENIRYGREDVT 492
Query: 940 EIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDE 999
E+ KA K ANA+ FI ++P + + VG+RG QLSGGQKQR+AIARA+++NP ILLLDE
Sbjct: 493 MDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDE 552
Query: 1000 ATSALDTASENLIQEALDKLMEGRTTIMVAHRLSTIRNADKIAVLQQGKVAEIGSHEQLL 1059
ATSALDT SE ++Q ALDK EGRTTI++AHRLST+RNAD IA G + E G+H++L+
Sbjct: 553 ATSALDTESEAVVQAALDKAREGRTTIVIAHRLSTVRNADVIAGFDGGVIVEQGNHDELM 612
Query: 1060 RKENGIYKQLIRLQQDKNPEAME 1082
+E GIY +L+ Q N +
Sbjct: 613 -REKGIYFKLVMTQTAGNEIELG 634
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 | Back alignment and structure |
|---|
Score = 594 bits (1533), Expect = 0.0
Identities = 179/448 (39%), Positives = 259/448 (57%), Gaps = 4/448 (0%)
Query: 4 GHALRYLSQFFVGFAVGFTSVWQLTLLTLAVVPLIAVAGGAYTITMSTLSEKGEAAYGEA 63
+ ++ G + WQLTLL LA+VP+IA+AG +S + K + +
Sbjct: 830 AVIFQNIANLGTGIIISLIYGWQLTLLLLAIVPIIAIAGVVEMKMLSGQALKDKKELEGS 889
Query: 64 GKVAEEIISQVRAVYAFVGEAKAIESYSHSLKEALKQGKKSGVAKGIGVGLTYGLLFCAW 123
GK+A E I R V + E K Y+ SL+ + K GI T +++ ++
Sbjct: 890 GKIATEAIENFRTVVSLTREQKFETMYAQSLQIPYRNAMKKAHVFGITFSFTQAMMYFSY 949
Query: 124 ALLLWYAGILVRHGDTNGGKAFTTIINVIFSGFALGQAAPNLAAIAKGKAAAANIISIIK 183
A + LV ++F A+GQ + AK +A++II II+
Sbjct: 950 AAAFRFGAYLVTQQLMTFENVLLVFSAIVFGAMAVGQVSSFAPDYAKATVSASHIIRIIE 1009
Query: 184 ENSHSSERPGDDGITLPKLAGQIEFSEVCFAYPSRPH-MVFENLNFSVDAGKTFAFVGPS 242
+ + G+ L G ++FS V F YP+RP V + L+ V G+T A VG S
Sbjct: 1010 KTP-EIDSYSTQGLKPNMLEGNVQFSGVVFNYPTRPSIPVLQGLSLEVKKGQTLALVGSS 1068
Query: 243 GSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNIL 302
G GKST++ +++R Y+P +G + LDG ++K L ++WLR Q+G+VSQEP LF SIA NI
Sbjct: 1069 GCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLRAQLGIVSQEPILFDCSIAENIA 1128
Query: 303 LGKED--ASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLR 360
G S + ++ AAK AN H F++ LPD Y T+VG+ GTQLSGGQKQRIAIARA++R
Sbjct: 1129 YGDNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALVR 1188
Query: 361 NPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRDVDTIMVLKNGQVV 420
P ILLLDEATSALD ESE +VQ AL+K RT IV+AHRLST+++ D I+V++NG+V
Sbjct: 1189 QPHILLLDEATSALDTESEKVVQEALDKAREGRTCIVIAHRLSTIQNADLIVVIQNGKVK 1248
Query: 421 ESGTHVDLISKGGEYAALVNLQSSEHLS 448
E GTH L+++ G Y ++V++Q+ S
Sbjct: 1249 EHGTHQQLLAQKGIYFSMVSVQAGAKRS 1276
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A Length = 582 | Back alignment and structure |
|---|
Score = 515 bits (1330), Expect = e-172
Identities = 171/567 (30%), Positives = 296/567 (52%), Gaps = 13/567 (2%)
Query: 509 WPYAVLGSVGAILAGMEAPLFALGITHILTAFYSPHDSQIKRVVDQVALIFVGLAVVTIP 568
++ + IL + +L + D V+ + L+ +GL ++
Sbjct: 24 KAGLIVAGIALILNAASDTFMLSLLKPLLDDGFGKTDRS---VLLWMPLVVIGLMILRGI 80
Query: 569 VYLLQHYFYTLMGEHLTARVRLSMFSAILSNEIGWFDLDENNTGLLISTLAADATLVRSA 628
+ Y + + + +R +F ++ + +FD + +TG L+S + D+ V S+
Sbjct: 81 TSYISSYCISWVSGKVVMTMRRRLFGHMMGMPVAFFD--KQSTGTLLSRITYDSEQVASS 138
Query: 629 LADRLSIIVQNVALTVTAFVIAFILSWRLAAVVAASLPLLIGAFVAEQLFLKGFGGDYNR 688
+ L +V+ A + F++ F SW+L+ ++ P++ A + +
Sbjct: 139 SSGALITVVREGASIIGLFIMMFYYSWQLSIILVVLAPIVSIAIRVVSKRFRSISKNMQN 198
Query: 689 AYSRATSVAREAIANIRTVAAYGIEKRISIQFASELSQPNKQALLRGHISGFGYGVSQLL 748
+ T+ A + + + V +G ++ + +F ++ Q + S + QL+
Sbjct: 199 TMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKMRLQGMKMVSASSISDPIIQLI 258
Query: 749 SLCSYALGLWYASVLIKQKGSNFGDIMKSFMVLIITALAVAETLA-LAPDIVKGSQALGP 807
+ + A L+ AS G I +I + ++L + +G A
Sbjct: 259 ASLALAFVLYAASFPSVMDSLTAGTIT-VVFSSMIALMRPLKSLTNVNAQFQRGMAACQT 317
Query: 808 VFGILYRKTAIQPDDPASKEVTEIKGNIELRNVSFKYPVRPDITIFENLNLKVSAGRSLA 867
+F IL + D + + G++E RNV+F YP R ++ N+NLK+ AG+++A
Sbjct: 318 LFAILDSEQEK---DEGKRVIDRATGDLEFRNVTFTYPGR-EVPALRNINLKIPAGKTVA 373
Query: 868 VVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRKIGLVQQEPALFSTTI 927
+VG+SGSGKST+ SL+ RFYD G +L+DG+D+R L SLR ++ LV Q LF+ T+
Sbjct: 374 LVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQVALVSQNVHLFNDTV 433
Query: 928 YENIKYGNEDA-SEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIAR 986
NI Y + S ++ +A + A A FI++M G + +G+ GV LSGGQ+QR+AIAR
Sbjct: 434 ANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIAR 493
Query: 987 AILKNPSILLLDEATSALDTASENLIQEALDKLMEGRTTIMVAHRLSTIRNADKIAVLQQ 1046
A+L++ IL+LDEATSALDT SE IQ ALD+L + RT++++AHRLSTI AD+I V++
Sbjct: 494 ALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEQADEIVVVED 553
Query: 1047 GKVAEIGSHEQLLRKENGIYKQLIRLQ 1073
G + E G+H +LL + +G+Y QL ++Q
Sbjct: 554 GIIVERGTHSELLAQ-HGVYAQLHKMQ 579
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A Length = 582 | Back alignment and structure |
|---|
Score = 475 bits (1225), Expect = e-156
Identities = 151/443 (34%), Positives = 234/443 (52%), Gaps = 9/443 (2%)
Query: 6 ALRYLSQFFVGFAVGFTSVWQLTLLTLAVVPLIAVAGGAYTITMSTLSEKGEAAYGEAGK 65
+R + F + F WQL+++ + + P++++A + ++S+ + G+
Sbjct: 146 VVREGASIIGLFIMMFYYSWQLSIILVVLAPIVSIAIRVVSKRFRSISKNMQNTMGQVTT 205
Query: 66 VAEEIISQVRAVYAFVGEAKAIESYSHSLKEALKQGKKSGVAKGIGVGLTYGLLFCAWAL 125
AE+++ + V F G+ + + + QG K A I + + A A
Sbjct: 206 SAEQMLKGHKEVLIFGGQEVETKRFDKVSNKMRLQGMKMVSASSISDPIIQLIASLALAF 265
Query: 126 LLWYAGILVRHGDTNGGK--AFTTIINVIFSGFALGQAAPNLAAIAKGKAAAANIISIIK 183
+L+ A G + + + L A +G AA + +I+
Sbjct: 266 VLYAASFPSVMDSLTAGTITVVFSSMIALMR--PLKSLTNVNAQFQRGMAACQTLFAILD 323
Query: 184 ENSHSSERPGDDGITLPKLAGQIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSG 243
E + + G +EF V F YP R N+N + AGKT A VG SG
Sbjct: 324 SEQEKDEGK----RVIDRATGDLEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSG 379
Query: 244 SGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNILL 303
SGKSTI S++ R Y+ G IL+DGHDL+ L LR Q+ LVSQ LF ++ANNI
Sbjct: 380 SGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAY 439
Query: 304 GKEDA-SMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNP 362
+ + S +++ EAA+ A A F+ + +G T +GE G LSGGQ+QRIAIARA+LR+
Sbjct: 440 ARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDS 499
Query: 363 KILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRDVDTIMVLKNGQVVES 422
IL+LDEATSALD ESE +Q AL+++ NRT++V+AHRLST+ D I+V+++G +VE
Sbjct: 500 PILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEQADEIVVVEDGIIVER 559
Query: 423 GTHVDLISKGGEYAALVNLQSSE 445
GTH +L+++ G YA L +Q +
Sbjct: 560 GTHSELLAQHGVYAQLHKMQFGQ 582
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} Length = 582 | Back alignment and structure |
|---|
Score = 509 bits (1313), Expect = e-169
Identities = 161/567 (28%), Positives = 285/567 (50%), Gaps = 13/567 (2%)
Query: 509 WPYAVLGSVGAILAGMEAPLFALGITHILTAFYSPHDSQIKRVVDQVALIFVGLAVVTIP 568
V+ ++ ++ + +L + +S + + + +GL V
Sbjct: 24 KAGLVVSTIALVINAAADTYMISLLKPLLDEGFGNAESN---FLRILPFMILGLMFVRGL 80
Query: 569 VYLLQHYFYTLMGEHLTARVRLSMFSAILSNEIGWFDLDENNTGLLISTLAADATLVRSA 628
Y + + ++ ++R +F+ + + +FD + +TG L+S + D+ V A
Sbjct: 81 SGFASSYCLSWVSGNVVMQMRRRLFNHFMHMPVRFFD--QESTGGLLSRITYDSEQVAGA 138
Query: 629 LADRLSIIVQNVALTVTAFVIAFILSWRLAAVVAASLPLLIGAFVAEQLFLKGFGGDYNR 688
+ L IV+ A + + F SW+L+ V+ P++ A + +
Sbjct: 139 TSRALVSIVREGASIIGLLTLMFWNSWQLSLVLIVVAPVVAFAISFVSKRFRKISRNMQT 198
Query: 689 AYSRATSVAREAIANIRTVAAYGIEKRISIQFASELSQPNKQALLRGHISGFGYGVSQLL 748
A TS A + + + V +YG ++ +F + +Q + V Q++
Sbjct: 199 AMGHVTSSAEQMLKGHKVVLSYGGQEVERKRFDKVSNSMRQQTMKLVSAQSIADPVIQMI 258
Query: 749 SLCSYALGLWYASVLIKQKGSNFGDIMKSFMVLIITALAVAETLA-LAPDIVKGSQALGP 807
+ + L+ ASV + G + + + L + + +G A
Sbjct: 259 ASLALFAVLFLASVDSIRAELTPGTFT-VVFSAMFGLMRPLKALTSVTSEFQRGMAACQT 317
Query: 808 VFGILYRKTAIQPDDPASKEVTEIKGNIELRNVSFKYPVRPDITIFENLNLKVSAGRSLA 867
+FG++ +T D E + G +++++V+F Y + + +++ + G+++A
Sbjct: 318 LFGLMDLETER---DNGKYEAERVNGEVDVKDVTFTYQGK-EKPALSHVSFSIPQGKTVA 373
Query: 868 VVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRKIGLVQQEPALFSTTI 927
+VG+SGSGKST+ +L RFYD SG++ +DG+D+R L +LRR LV Q LF+ TI
Sbjct: 374 LVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNLRRHFALVSQNVHLFNDTI 433
Query: 928 YENIKYGNE-DASEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIAR 986
NI Y E + + ++ +A + A+A FI MP+G + +G+ G LSGGQ+QRVAIAR
Sbjct: 434 ANNIAYAAEGEYTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIAR 493
Query: 987 AILKNPSILLLDEATSALDTASENLIQEALDKLMEGRTTIMVAHRLSTIRNADKIAVLQQ 1046
A+L++ +L+LDEATSALDT SE IQ ALD+L + +T +++AHRLSTI AD+I V+ +
Sbjct: 494 ALLRDAPVLILDEATSALDTESERAIQAALDELQKNKTVLVIAHRLSTIEQADEILVVDE 553
Query: 1047 GKVAEIGSHEQLLRKENGIYKQLIRLQ 1073
G++ E G H LL + +G Y QL R+Q
Sbjct: 554 GEIIERGRHADLLAQ-DGAYAQLHRIQ 579
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} Length = 582 | Back alignment and structure |
|---|
Score = 468 bits (1206), Expect = e-153
Identities = 140/432 (32%), Positives = 228/432 (52%), Gaps = 9/432 (2%)
Query: 17 FAVGFTSVWQLTLLTLAVVPLIAVAGGAYTITMSTLSEKGEAAYGEAGKVAEEIISQVRA 76
+ F + WQL+L+ + V P++A A + +S + A G AE+++ +
Sbjct: 157 LTLMFWNSWQLSLVLIVVAPVVAFAISFVSKRFRKISRNMQTAMGHVTSSAEQMLKGHKV 216
Query: 77 VYAFVGEAKAIESYSHSLKEALKQGKKSGVAKGIGVGLTYGLLFCAWALLLWYAGILVRH 136
V ++ G+ + + +Q K A+ I + + A +L+ A +
Sbjct: 217 VLSYGGQEVERKRFDKVSNSMRQQTMKLVSAQSIADPVIQMIASLALFAVLFLASVDSIR 276
Query: 137 GDTNGGK--AFTTIINVIFSGFALGQAAPNLAAIAKGKAAAANIISIIKENSHSSERPGD 194
+ G + + + L + +G AA + ++ +
Sbjct: 277 AELTPGTFTVVFSAMFGLMR--PLKALTSVTSEFQRGMAACQTLFGLMDL----ETERDN 330
Query: 195 DGITLPKLAGQIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQ 254
++ G+++ +V F Y + +++FS+ GKT A VG SGSGKSTI ++
Sbjct: 331 GKYEAERVNGEVDVKDVTFTYQGKEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFT 390
Query: 255 RLYEPTSGKILLDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNILLGKE-DASMDRV 313
R Y+ SG I LDGHD++ +L LR LVSQ LF +IANNI E + + +++
Sbjct: 391 RFYDVDSGSICLDGHDVRDYKLTNLRRHFALVSQNVHLFNDTIANNIAYAAEGEYTREQI 450
Query: 314 IEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSA 373
+AA+ A+A F+E +P G T +GE GT LSGGQ+QR+AIARA+LR+ +L+LDEATSA
Sbjct: 451 EQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIARALLRDAPVLILDEATSA 510
Query: 374 LDAESELIVQRALEKIMSNRTTIVVAHRLSTVRDVDTIMVLKNGQVVESGTHVDLISKGG 433
LD ESE +Q AL+++ N+T +V+AHRLST+ D I+V+ G+++E G H DL+++ G
Sbjct: 511 LDTESERAIQAALDELQKNKTVLVIAHRLSTIEQADEILVVDEGEIIERGRHADLLAQDG 570
Query: 434 EYAALVNLQSSE 445
YA L +Q E
Sbjct: 571 AYAQLHRIQFGE 582
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A Length = 578 | Back alignment and structure |
|---|
Score = 501 bits (1293), Expect = e-166
Identities = 166/571 (29%), Positives = 280/571 (49%), Gaps = 13/571 (2%)
Query: 509 WPYAVLGSVGAILAGMEAPLFAL----GITHILTAFYSPHDSQIKRVVDQVALIFVGLAV 564
+ I+ L L I ++ D ++ + + + +
Sbjct: 13 KYRIFATIIVGIIKFGIPMLIPLLIKYAIDGVINNHALTTDEKVHHLTIAIGIALFIFVI 72
Query: 565 VTIPVYLLQHYFYTLMGEHLTARVRLSMFSAILSNEIGWFDLDENNTGLLISTLAADATL 624
V P+ ++ Y + +R +++ + + ++ N G +IS + D
Sbjct: 73 VRPPIEFIRQYLAQWTSNKILYDIRKKLYNHLQALSARFYA--NNQVGQVISRVINDVEQ 130
Query: 625 VRSALADRLSIIVQNVALTVTAFVIAFILSWRLAAVVAASLPLLIGAFVAEQLFLKGFGG 684
+ + L I + + A I F L +L P I L+
Sbjct: 131 TKDFILTGLMNIWLDCITIIIALSIMFFLDVKLTLAALFIFPFYILTVYVFFGRLRKLTR 190
Query: 685 DYNRAYSRATSVAREAIANIRTVAAYGIEKRISIQFASELSQPNKQALLRG-HISGFGYG 743
+ ++A + E + I V ++ IE + F + + L+ + + +
Sbjct: 191 ERSQALAEVQGFLHERVQGISVVKSFAIEDNEAKNFD-KKNTNFLTRALKHTRWNAYSFA 249
Query: 744 VSQLLSLCSYALGLWYASVLIKQKGSNFGDIMKSFMVLIITALA-VAETLALAPDIVKGS 802
++ + + + L G + +F+ + + +A + +
Sbjct: 250 AINTVTDIGPIIVIGVGAYLAISGSITVGTLA-AFVGYLELLFGPLRRLVASFTTLTQSF 308
Query: 803 QALGPVFGILYRKTAIQPDDPASKEVTEIKGNIELRNVSFKYPVRPDITIFENLNLKVSA 862
++ VF ++ I + ++ + +G I++ +VSF+Y + I +++NL +
Sbjct: 309 ASMDRVFQLIDEDYDI-KNGVGAQPIEIKQGRIDIDHVSFQYN-DNEAPILKDINLSIEK 366
Query: 863 GRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRKIGLVQQEPAL 922
G ++A VG SG GKST+I+L+ RFYD SG +LIDG++I+ SLR +IGLVQQ+ L
Sbjct: 367 GETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNIL 426
Query: 923 FSTTIYENIKYGNEDASEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRV 982
FS T+ ENI G A++ E+++A K ANAH FI +P+GY + VG+RGV+LSGGQKQR+
Sbjct: 427 FSDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRL 486
Query: 983 AIARAILKNPSILLLDEATSALDTASENLIQEALDKLMEGRTTIMVAHRLSTIRNADKIA 1042
+IAR L NP IL+LDEATSALD SE++IQEALD L + RTT++VAHRLSTI +ADKI
Sbjct: 487 SIARIFLNNPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTITHADKIV 546
Query: 1043 VLQQGKVAEIGSHEQLLRKENGIYKQLIRLQ 1073
V++ G + E G+H +L+ K G Y+ L +Q
Sbjct: 547 VIENGHIVETGTHRELIAK-QGAYEHLYSIQ 576
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A Length = 578 | Back alignment and structure |
|---|
Score = 457 bits (1177), Expect = e-149
Identities = 149/433 (34%), Positives = 231/433 (53%), Gaps = 6/433 (1%)
Query: 12 QFFVGFAVGFTSVWQLTLLTLAVVPLIAVAGGAYTITMSTLSEKGEAAYGEAGKVAEEII 71
+ ++ F +LTL L + P + + + L+ + A E E +
Sbjct: 148 TIIIALSIMFFLDVKLTLAALFIFPFYILTVYVFFGRLRKLTRERSQALAEVQGFLHERV 207
Query: 72 SQVRAVYAFVGEAKAIESYSHSLKEALKQGKKSGVAKGIGVGLTYGLLFCAWALLLWYAG 131
+ V +F E +++ L + K + +++
Sbjct: 208 QGISVVKSFAIEDNEAKNFDKKNTNFLTRALKHTRWNAYSFAAINTVTDIGPIIVIGVGA 267
Query: 132 ILVRHGDTNGGK--AFTTIINVIFSGFALGQAAPNLAAIAKGKAAAANIISIIKENSHSS 189
L G G AF + ++F L + + + + A+ + +I E+
Sbjct: 268 YLAISGSITVGTLAAFVGYLELLFG--PLRRLVASFTTLTQSFASMDRVFQLIDEDYDIK 325
Query: 190 ERPGDDGITLPKLAGQIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTI 249
+ G+I+ V F Y + +++N S++ G+T AFVG SG GKST+
Sbjct: 326 NGV--GAQPIEIKQGRIDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTL 383
Query: 250 ISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNILLGKEDAS 309
I+++ R Y+ TSG+IL+DGH++K LR Q+GLV Q+ LF+ ++ NILLG+ A+
Sbjct: 384 INLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGRPTAT 443
Query: 310 MDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDE 369
+ V+EAAK ANAH F+ LP GY T+VGE G +LSGGQKQR++IAR L NP IL+LDE
Sbjct: 444 DEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDE 503
Query: 370 ATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRDVDTIMVLKNGQVVESGTHVDLI 429
ATSALD ESE I+Q AL+ + +RTT++VAHRLST+ D I+V++NG +VE+GTH +LI
Sbjct: 504 ATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTITHADKIVVIENGHIVETGTHRELI 563
Query: 430 SKGGEYAALVNLQ 442
+K G Y L ++Q
Sbjct: 564 AKQGAYEHLYSIQ 576
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* Length = 271 | Back alignment and structure |
|---|
Score = 456 bits (1176), Expect = e-153
Identities = 108/259 (41%), Positives = 157/259 (60%), Gaps = 4/259 (1%)
Query: 192 PGDDGITLPKLAGQIEFSEVCFAYPSRP-HMVFENLNFSVDAGKTFAFVGPSGSGKSTII 250
P + + G ++F +V FAYP+ P V + L F++ GK A VGP+GSGKST+
Sbjct: 3 PLSGSLAPLNMKGLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVA 62
Query: 251 SMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNILLGK-EDAS 309
+++Q LY+PT GK+LLDG L +L Q+ V QEP LF S NI G +
Sbjct: 63 ALLQNLYQPTGGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGLTRTPT 122
Query: 310 MDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDE 369
M+ + A + AH F+ G P GY T+VGE G QLSGGQ+Q +A+ARA++R P++L+LD
Sbjct: 123 MEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDN 182
Query: 370 ATSALDAESELIVQRALEKIM--SNRTTIVVAHRLSTVRDVDTIMVLKNGQVVESGTHVD 427
ATSALDA ++L VQR L + ++RT +++ +LS I+ LK G V E GTH+
Sbjct: 183 ATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLSLAERAHHILFLKEGSVCEQGTHLQ 242
Query: 428 LISKGGEYAALVNLQSSEH 446
L+ +GG Y ++V ++
Sbjct: 243 LMERGGCYRSMVEALAAPS 261
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* Length = 271 | Back alignment and structure |
|---|
Score = 448 bits (1155), Expect = e-150
Identities = 95/268 (35%), Positives = 148/268 (55%), Gaps = 5/268 (1%)
Query: 818 IQPDDPASKEVTEIKGNIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKS 877
+ P + +KG ++ ++VSF YP P++ + + L + G+ A+VG +GSGKS
Sbjct: 1 MSPLSGSLA-PLNMKGLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKS 59
Query: 878 TVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRKIGLVQQEPALFSTTIYENIKYGN-E 936
TV +L+ Y P G VL+DG + + L ++ V QEP LF + ENI YG
Sbjct: 60 TVAALLQNLYQPTGGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGLTR 119
Query: 937 DASEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILL 996
+ E+ + AH FIS P+GY + VG+ G QLSGGQ+Q VA+ARA+++ P +L+
Sbjct: 120 TPTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLI 179
Query: 997 LDEATSALDTASENLIQEALDKLME--GRTTIMVAHRLSTIRNADKIAVLQQGKVAEIGS 1054
LD ATSALD ++ +Q L + E RT +++ +LS A I L++G V E G+
Sbjct: 180 LDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLSLAERAHHILFLKEGSVCEQGT 239
Query: 1055 HEQLLRKENGIYKQLIRLQQDKNPEAME 1082
H QL+ + G Y+ ++ + A
Sbjct: 240 HLQLMER-GGCYRSMVEALAAPSDAAAH 266
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* Length = 247 | Back alignment and structure |
|---|
Score = 444 bits (1146), Expect = e-149
Identities = 112/246 (45%), Positives = 165/246 (67%), Gaps = 1/246 (0%)
Query: 830 EIKGNIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDP 889
+I RN+ F+Y I +N+NL + G + +VG+SGSGKST+ L+ RFY P
Sbjct: 3 HHHHDITFRNIRFRYKPDSP-VILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIP 61
Query: 890 ISGTVLIDGYDIRTLNLRSLRRKIGLVQQEPALFSTTIYENIKYGNEDASEIELMKATKA 949
+G VLIDG+D+ + LRR++G+V Q+ L + +I +NI N S +++ A K
Sbjct: 62 ENGQVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKL 121
Query: 950 ANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASE 1009
A AH FIS + EGY + VG++G LSGGQ+QR+AIARA++ NP IL+ DEATSALD SE
Sbjct: 122 AGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESE 181
Query: 1010 NLIQEALDKLMEGRTTIMVAHRLSTIRNADKIAVLQQGKVAEIGSHEQLLRKENGIYKQL 1069
++I + K+ +GRT I++AHRLST++NAD+I V+++GK+ E G H++LL + +Y L
Sbjct: 182 HVIMRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYL 241
Query: 1070 IRLQQD 1075
+LQ D
Sbjct: 242 YQLQSD 247
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* Length = 247 | Back alignment and structure |
|---|
Score = 434 bits (1120), Expect = e-145
Identities = 116/241 (48%), Positives = 159/241 (65%), Gaps = 1/241 (0%)
Query: 204 GQIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGK 263
I F + F Y ++ +N+N S+ G+ VG SGSGKST+ ++QR Y P +G+
Sbjct: 6 HDITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQ 65
Query: 264 ILLDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNILLGKEDASMDRVIEAAKAANAH 323
+L+DGHDL WLR Q+G+V Q+ L SI +NI L S+++VI AAK A AH
Sbjct: 66 VLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAH 125
Query: 324 SFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQ 383
F+ L +GY T VGE G LSGGQ+QRIAIARA++ NPKIL+ DEATSALD ESE ++
Sbjct: 126 DFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIM 185
Query: 384 RALEKIMSNRTTIVVAHRLSTVRDVDTIMVLKNGQVVESGTHVDLISK-GGEYAALVNLQ 442
R + KI RT I++AHRLSTV++ D I+V++ G++VE G H +L+S+ Y+ L LQ
Sbjct: 186 RNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQLQ 245
Query: 443 S 443
S
Sbjct: 246 S 246
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 Length = 243 | Back alignment and structure |
|---|
Score = 416 bits (1071), Expect = e-138
Identities = 102/240 (42%), Positives = 158/240 (65%), Gaps = 4/240 (1%)
Query: 835 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTV 894
+ R+V F Y I +++ + +A G SG GKST+ SL+ RFY P +G +
Sbjct: 2 LSARHVDFAYDDSEQI--LRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEI 59
Query: 895 LIDGYDIRTLNLRSLRRKIGLVQQEPALFSTTIYENIKYGNE-DASEIELMKATKAANAH 953
IDG I ++L + R +IG V Q+ A+ + TI EN+ YG E D ++ +L + A A
Sbjct: 60 TIDGQPIDNISLENWRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFAR 119
Query: 954 GFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQ 1013
F+ MP+ + VG+RGV++SGGQ+QR+AIARA L+NP IL+LDEAT++LD+ SE+++Q
Sbjct: 120 SFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQ 179
Query: 1014 EALDKLMEGRTTIMVAHRLSTIRNADKIAVLQQGKVAEIGSHEQLLRKENGIYKQLIRLQ 1073
+ALD LM+GRTT+++AHRLSTI +ADKI +++G++ G H +L+ + +Y + + Q
Sbjct: 180 KALDSLMKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVAT-HPLYAKYVSEQ 238
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 Length = 243 | Back alignment and structure |
|---|
Score = 414 bits (1068), Expect = e-138
Identities = 108/242 (44%), Positives = 158/242 (65%), Gaps = 2/242 (0%)
Query: 206 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKIL 265
+ V FAY + +++F AF GPSG GKSTI S+++R Y+PT+G+I
Sbjct: 2 LSARHVDFAYDDSEQ-ILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEIT 60
Query: 266 LDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNILLGKE-DASMDRVIEAAKAANAHS 324
+DG + ++ L+ R Q+G VSQ+ A+ A +I N+ G E D + + + + A A S
Sbjct: 61 IDGQPIDNISLENWRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARS 120
Query: 325 FVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQR 384
FVE +PD T+VGE G ++SGGQ+QR+AIARA LRNPKIL+LDEAT++LD+ESE +VQ+
Sbjct: 121 FVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQK 180
Query: 385 ALEKIMSNRTTIVVAHRLSTVRDVDTIMVLKNGQVVESGTHVDLISKGGEYAALVNLQSS 444
AL+ +M RTT+V+AHRLST+ D D I ++ GQ+ SG H +L++ YA V+ Q +
Sbjct: 181 ALDSLMKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVATHPLYAKYVSEQLT 240
Query: 445 EH 446
Sbjct: 241 VG 242
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} Length = 260 | Back alignment and structure |
|---|
Score = 416 bits (1072), Expect = e-138
Identities = 106/257 (41%), Positives = 170/257 (66%), Gaps = 2/257 (0%)
Query: 821 DDPASKEVTEIKGNIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVI 880
+ + NIE +V+F YP + + +++N + +G + A+VG +GSGKST+
Sbjct: 4 SFSLTSHEKKFGVNIEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIA 63
Query: 881 SLVMRFYDPISGTVLIDGYDIRTLNLRSLRRKIGLVQQEPALFSTTIYENIKYGNEDASE 940
L+ RFYD G + I G ++ N S+R IG+V Q+ LF+ TI NI YG DA++
Sbjct: 64 KLLYRFYDA-EGDIKIGGKNVNKYNRNSIRSIIGIVPQDTILFNETIKYNILYGKLDATD 122
Query: 941 IELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEA 1000
E++KATK+A + FI +P+ + + VG++G++LSGG++QR+AIAR +LK+P I++ DEA
Sbjct: 123 EEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDPKIVIFDEA 182
Query: 1001 TSALDTASENLIQEALDKLMEGRTTIMVAHRLSTIRNADKIAVLQQGKVAEIGSHEQLLR 1060
TS+LD+ +E L Q+A++ L + RT I++AHRLSTI +A+ I +L +GK+ E G+H+ LL+
Sbjct: 183 TSSLDSKTEYLFQKAVEDLRKNRTLIIIAHRLSTISSAESIILLNKGKIVEKGTHKDLLK 242
Query: 1061 KENGIYKQLIRLQQDKN 1077
NG Y ++ +Q N
Sbjct: 243 L-NGEYAEMWNMQSGGN 258
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} Length = 260 | Back alignment and structure |
|---|
Score = 398 bits (1026), Expect = e-131
Identities = 109/254 (42%), Positives = 165/254 (64%), Gaps = 2/254 (0%)
Query: 194 DDGITLPKLAGQIEFSEVCFAYPSRP-HMVFENLNFSVDAGKTFAFVGPSGSGKSTIISM 252
K IEFS+V F+YP + H +++NF + +G T A VG +GSGKSTI +
Sbjct: 6 SLTSHEKKFGVNIEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKL 65
Query: 253 VQRLYEPTSGKILLDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNILLGKEDASMDR 312
+ R Y+ G I + G ++ +R +G+V Q+ LF +I NIL GK DA+ +
Sbjct: 66 LYRFYDA-EGDIKIGGKNVNKYNRNSIRSIIGIVPQDTILFNETIKYNILYGKLDATDEE 124
Query: 313 VIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATS 372
VI+A K+A + F+E LP + T VG G +LSGG++QRIAIAR +L++PKI++ DEATS
Sbjct: 125 VIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDPKIVIFDEATS 184
Query: 373 ALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRDVDTIMVLKNGQVVESGTHVDLISKG 432
+LD+++E + Q+A+E + NRT I++AHRLST+ ++I++L G++VE GTH DL+
Sbjct: 185 SLDSKTEYLFQKAVEDLRKNRTLIIIAHRLSTISSAESIILLNKGKIVEKGTHKDLLKLN 244
Query: 433 GEYAALVNLQSSEH 446
GEYA + N+QS +
Sbjct: 245 GEYAEMWNMQSGGN 258
|
| >3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 598 | Back alignment and structure |
|---|
Score = 411 bits (1058), Expect = e-131
Identities = 166/595 (27%), Positives = 292/595 (49%), Gaps = 51/595 (8%)
Query: 498 IWELLKLNAAEWPYAVLGSVGAILAGMEAPLFALGITHILTAFYSPHD-SQIKRVVDQVA 556
+ L+ + + + + G+ +P I + + P + R + +
Sbjct: 28 LLGYLRPHTFTLIMVFVFVTVSSILGVLSPYL---IGKTIDVVFVPRRFDLLPRYMLILG 84
Query: 557 LIFVGLAVVTIPVYLLQHYFYTLMGEHLTARVRLSMFSAILSNEIGWFDLDENNTGLLIS 616
I+ +++ LQ + + + R+R +F + +G+FD G +IS
Sbjct: 85 TIYALTSLLF----WLQGKIMLTLSQDVVFRLRKELFEKLQRVPVGFFD--RTPHGDIIS 138
Query: 617 TLAADATLVRSALADRLSIIVQNVALTVTAFVIAFILSWRLAAVVAASLPLLIGAFVAEQ 676
+ D + + L + + + A ++ F ++ L+ V + +PL +
Sbjct: 139 RVINDVDNINNVLGNSIIQFFSGIVTLAGAVIMMFRVNVILSLVTLSIVPLTV------- 191
Query: 677 LFLKGFGGDYNRAYSRATSVAR--------EAIANIRTVAAYGIEKRISIQFASELSQPN 728
+ R Y E I+ + + + E++ +F +++
Sbjct: 192 -LITQIVSSQTRKYFYENQRVLGQLNGIIEEDISGLTVIKLFTREEKEMEKFD-RVNESL 249
Query: 729 KQALLRG-HISGFGYGVSQLLSLCSYALGLWYASVLIKQKGSNFGDIMKSFMVLI----- 782
++ + SG + +++ +AL + L + G I +F+
Sbjct: 250 RKVGTKAQIFSGVLPPLMNMVNNLGFALISGFGGWLALKDIITVGTIA-TFIGYSRQFTR 308
Query: 783 -ITALA-VAETL--ALAPDIVKGSQALGPVFGILYRKTAIQPDDPASKEVTEIKGNIELR 838
+ L+ + ALA + +F IL + DDP + E+ E++G IE +
Sbjct: 309 PLNELSNQFNMIQMALA--------SAERIFEIL--DLEEEKDDPDAVELREVRGEIEFK 358
Query: 839 NVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDG 898
NV F Y + +++ + G+ +A+VG +GSGK+T+++L+MRFYD G +L+DG
Sbjct: 359 NVWFSY--DKKKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDG 416
Query: 899 YDIRTLNLRSLRRKIGLVQQEPALFSTTIYENIKYGNEDASEIELMKATKAANAHGFISR 958
DIR + SLR IG+V Q+ LFSTT+ EN+KYGN A++ E+ +A K ++ FI
Sbjct: 417 IDIRKIKRSSLRSSIGIVLQDTILFSTTVKENLKYGNPGATDEEIKEAAKLTHSDHFIKH 476
Query: 959 MPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDK 1018
+PEGY++ + D G LS GQ+Q +AI RA L NP IL+LDEATS +DT +E IQ A+ K
Sbjct: 477 LPEGYETVLTDNGEDLSQGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWK 536
Query: 1019 LMEGRTTIMVAHRLSTIRNADKIAVLQQGKVAEIGSHEQLLRKENGIYKQLIRLQ 1073
LMEG+T+I++AHRL+TI+NAD I VL+ G++ E+G H++L++K G Y +L Q
Sbjct: 537 LMEGKTSIIIAHRLNTIKNADLIIVLRDGEIVEMGKHDELIQK-RGFYYELFTSQ 590
|
| >3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 598 | Back alignment and structure |
|---|
Score = 368 bits (948), Expect = e-115
Identities = 144/443 (32%), Positives = 238/443 (53%), Gaps = 17/443 (3%)
Query: 10 LSQFFVGFA--VG-----FTSVWQLTLLTLAVVPLIAVAGGAYTITMSTLSEKGEAAYGE 62
+ QFF G G F L+L+TL++VPL + + + + G+
Sbjct: 155 IIQFFSGIVTLAGAVIMMFRVNVILSLVTLSIVPLTVLITQIVSSQTRKYFYENQRVLGQ 214
Query: 63 AGKVAEEIISQVRAVYAFVGEAKAIESYSHSLKEALKQGKKSGVAKGIGVGLTYGLLFCA 122
+ EE IS + + F E K +E + + K G K+ + G+ L +
Sbjct: 215 LNGIIEEDISGLTVIKLFTREEKEMEKFDRVNESLRKVGTKAQIFSGVLPPLMNMVNNLG 274
Query: 123 WALLLWYAGILVRHGDTNGGK--AFTTIINVIFSGFALGQAAPNLAAIAKGKAAAANIIS 180
+AL+ + G L G F F+ L + + I A+A I
Sbjct: 275 FALISGFGGWLALKDIITVGTIATFIGYSR-QFTR-PLNELSNQFNMIQMALASAERIFE 332
Query: 181 IIKENSHSSERPGDDGITLPKLAGQIEFSEVCFAY-PSRPHMVFENLNFSVDAGKTFAFV 239
I+ E+ D + L ++ G+IEF V F+Y +P V +++ F + G+ A V
Sbjct: 333 ILDL---EEEKDDPDAVELREVRGEIEFKNVWFSYDKKKP--VLKDITFHIKPGQKVALV 387
Query: 240 GPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGLVSQEPALFATSIAN 299
GP+GSGK+TI++++ R Y+ G+IL+DG D++ ++ LR +G+V Q+ LF+T++
Sbjct: 388 GPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKIKRSSLRSSIGIVLQDTILFSTTVKE 447
Query: 300 NILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVL 359
N+ G A+ + + EAAK ++ F++ LP+GY+T + + G LS GQ+Q +AI RA L
Sbjct: 448 NLKYGNPGATDEEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRAFL 507
Query: 360 RNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRDVDTIMVLKNGQV 419
NPKIL+LDEATS +D ++E +Q A+ K+M +T+I++AHRL+T+++ D I+VL++G++
Sbjct: 508 ANPKILILDEATSNVDTKTEKSIQAAMWKLMEGKTSIIIAHRLNTIKNADLIIVLRDGEI 567
Query: 420 VESGTHVDLISKGGEYAALVNLQ 442
VE G H +LI K G Y L Q
Sbjct: 568 VEMGKHDELIQKRGFYYELFTSQ 590
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* Length = 306 | Back alignment and structure |
|---|
Score = 399 bits (1027), Expect = e-131
Identities = 128/273 (46%), Positives = 178/273 (65%), Gaps = 4/273 (1%)
Query: 808 VFGILYRKTAIQPDDPASKEVTEIKGNIELRNVSFKYPVRPDITIFENLNLKVSAGRSLA 867
+F +L +T ++ D P + + KG IE NV F Y ++++ V G++LA
Sbjct: 28 MFDLLKEETEVK-DLPGAGPLRFQKGRIEFENVHFSY--ADGRETLQDVSFTVMPGQTLA 84
Query: 868 VVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRKIGLVQQEPALFSTTI 927
+VG SG+GKST++ L+ RFYD SG + IDG DI + SLR IG+V Q+ LF+ TI
Sbjct: 85 LVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRSHIGVVPQDTVLFNDTI 144
Query: 928 YENIKYGNEDASEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARA 987
+NI+YG A E+ A +AA H I PEGY++ VG+RG++LSGG+KQRVAIAR
Sbjct: 145 ADNIRYGRVTAGNDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGGEKQRVAIART 204
Query: 988 ILKNPSILLLDEATSALDTASENLIQEALDKLMEGRTTIMVAHRLSTIRNADKIAVLQQG 1047
ILK P I+LLDEATSALDT++E IQ +L K+ RTTI+VAHRLST+ NAD+I V++ G
Sbjct: 205 ILKAPGIILLDEATSALDTSNERAIQASLAKVCANRTTIVVAHRLSTVVNADQILVIKDG 264
Query: 1048 KVAEIGSHEQLLRKENGIYKQLIRLQQDKNPEA 1080
+ E G HE LL + G+Y + +LQQ + +
Sbjct: 265 CIVERGRHEALLSR-GGVYADMWQLQQGQEETS 296
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* Length = 306 | Back alignment and structure |
|---|
Score = 379 bits (975), Expect = e-123
Identities = 124/279 (44%), Positives = 177/279 (63%), Gaps = 5/279 (1%)
Query: 168 IAKGKAAAANIISIIKENSHSSERPGDDGITLPKLAGQIEFSEVCFAY-PSRPHMVFENL 226
+ N+ ++KE + + P L G+IEF V F+Y R +++
Sbjct: 18 GSHMFIDMENMFDLLKEETEVKDLP--GAGPLRFQKGRIEFENVHFSYADGRE--TLQDV 73
Query: 227 NFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGLV 286
+F+V G+T A VGPSG+GKSTI+ ++ R Y+ +SG I +DG D+ + LR +G+V
Sbjct: 74 SFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRSHIGVV 133
Query: 287 SQEPALFATSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSG 346
Q+ LF +IA+NI G+ A D V AA+AA H + P+GY+TQVGE G +LSG
Sbjct: 134 PQDTVLFNDTIADNIRYGRVTAGNDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSG 193
Query: 347 GQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVR 406
G+KQR+AIAR +L+ P I+LLDEATSALD +E +Q +L K+ +NRTTIVVAHRLSTV
Sbjct: 194 GEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCANRTTIVVAHRLSTVV 253
Query: 407 DVDTIMVLKNGQVVESGTHVDLISKGGEYAALVNLQSSE 445
+ D I+V+K+G +VE G H L+S+GG YA + LQ +
Sbjct: 254 NADQILVIKDGCIVERGRHEALLSRGGVYADMWQLQQGQ 292
|
| >3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 587 | Back alignment and structure |
|---|
Score = 368 bits (946), Expect = e-115
Identities = 156/532 (29%), Positives = 272/532 (51%), Gaps = 23/532 (4%)
Query: 554 QVALIFVGLAVVTIPVYLLQHYFYTLMGEHLTARVRLSMFSAI--LSNEIGWFDLDENNT 611
+ ++ + +A++ + F + ++ A +R +F + S +++ +T
Sbjct: 64 KTGILMLIVALIGAVGGIGCTVFASYASQNFGADLRRDLFRKVLSFSIS----NVNRFHT 119
Query: 612 GLLISTLAADATLVRSALADRLSIIVQNVALTVTAFVIAFILSWRLAAVVAASLPLLIGA 671
LI+ L D T +++ + L I+V+ L V V+A ++ +L++V+ +P ++
Sbjct: 120 SSLITRLTNDVTQLQNLVMMLLRIVVRAPLLFVGGIVMAVSINVKLSSVLIFLIPPIVLL 179
Query: 672 FV-----AEQLFLKGFGGDYNRAYSRATSVAREAIANIRTVAAYGIEKRISIQFASELSQ 726
FV LF K + V RE + +R V A+ E+ + F
Sbjct: 180 FVWLTKKGNPLFRKIQ-----ESTDEVNRVVRENLLGVRVVRAFRREEYENENFRKANES 234
Query: 727 PNKQALLRGHISGFGYGVSQLLSLCSYALGLWYASVLIKQKGSNFGDIMK--SFMVLIIT 784
+ + + F + + LW+ VL++ G IM ++++ I+
Sbjct: 235 LRRSIISAFSLIVFALPLFIFIVNMGMIAVLWFGGVLVRNNQMEIGSIMAYTNYLMQIMF 294
Query: 785 ALAVAETLALAPDIVKGSQALGPVFGILYRKTAIQPDDPASKEVTEIKGNIELRNVSFKY 844
+L + + IV+ S + V +L K AI+ + + + ++G++ NV F+Y
Sbjct: 295 SLMMIGNILNF--IVRASASAKRVLEVLNEKPAIE-EADNALALPNVEGSVSFENVEFRY 351
Query: 845 PVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTL 904
D + +N V G +AV+G++GSGKST+++L+ R DP G V +D D+RT+
Sbjct: 352 FENTDPVL-SGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTV 410
Query: 905 NLRSLRRKIGLVQQEPALFSTTIYENIKYGNEDASEIELMKATKAANAHGFISRMPEGYQ 964
L+ LR I V QE LFS TI EN+K+G EDA++ E+++A K A H FI +PEGY
Sbjct: 411 KLKDLRGHISAVPQETVLFSGTIKENLKWGREDATDDEIVEAAKIAQIHDFIISLPEGYD 470
Query: 965 SHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLMEGRT 1024
S V G SGGQKQR++IARA++K P +L+LD+ TS++D +E I + L + +G T
Sbjct: 471 SRVERGGRNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYTKGCT 530
Query: 1025 TIMVAHRLSTIRNADKIAVLQQGKVAEIGSHEQLLRKENGIYKQLIRLQQDK 1076
T ++ ++ T ADKI VL +GKVA G+H++LL + Y+++ Q
Sbjct: 531 TFIITQKIPTALLADKILVLHEGKVAGFGTHKELL-EHCKPYREIYESQFGN 581
|
| >3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 587 | Back alignment and structure |
|---|
Score = 340 bits (875), Expect = e-105
Identities = 130/435 (29%), Positives = 223/435 (51%), Gaps = 6/435 (1%)
Query: 13 FFVGFAVGFTSVWQLTLLTLAVVPLIAVAGGAYTITMSTLSEKGEAAYGEAGKVAEEIIS 72
F G + + +L+ + + ++P I + T + L K + + E +V E +
Sbjct: 151 FVGGIVMAVSINVKLSSVLIFLIPPIVLLFVWLTKKGNPLFRKIQESTDEVNRVVRENLL 210
Query: 73 QVRAVYAFVGEAKAIESYSHSLKEALKQGKKSGVAKGIGVGLTYGLLFCAWALLLWYAGI 132
VR V AF E E++ + + + + + L ++ +LW+ G+
Sbjct: 211 GVRVVRAFRREEYENENFRKANESLRRSIISAFSLIVFALPLFIFIVNMGMIAVLWFGGV 270
Query: 133 LVRHGDTNGGK--AFTTIINVIFSGFALGQAAPNLAAIAKGKAAAANIISIIKENSHSSE 190
LVR+ G A+T + I F+L L I + A+A ++ ++ E +
Sbjct: 271 LVRNNQMEIGSIMAYTNYLMQIM--FSLMMIGNILNFIVRASASAKRVLEVLNE--KPAI 326
Query: 191 RPGDDGITLPKLAGQIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTII 250
D+ + LP + G + F V F Y V +NFSV G A +G +GSGKST++
Sbjct: 327 EEADNALALPNVEGSVSFENVEFRYFENTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLM 386
Query: 251 SMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNILLGKEDASM 310
+++ RL +P G++ +D D+++++LK LR + V QE LF+ +I N+ G+EDA+
Sbjct: 387 NLIPRLIDPERGRVEVDELDVRTVKLKDLRGHISAVPQETVLFSGTIKENLKWGREDATD 446
Query: 311 DRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEA 370
D ++EAAK A H F+ LP+GY ++V GG SGGQKQR++IARA+++ PK+L+LD+
Sbjct: 447 DEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRLSIARALVKKPKVLILDDC 506
Query: 371 TSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRDVDTIMVLKNGQVVESGTHVDLIS 430
TS++D +E + L++ TT ++ ++ T D I+VL G+V GTH +L+
Sbjct: 507 TSSVDPITEKRILDGLKRYTKGCTTFIITQKIPTALLADKILVLHEGKVAGFGTHKELLE 566
Query: 431 KGGEYAALVNLQSSE 445
Y + Q
Sbjct: 567 HCKPYREIYESQFGN 581
|
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} Length = 390 | Back alignment and structure |
|---|
Score = 225 bits (575), Expect = 2e-65
Identities = 65/252 (25%), Positives = 120/252 (47%), Gaps = 5/252 (1%)
Query: 832 KGNIELRNVSFKYPVRPDIT-IFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPI 890
G + +++++ KY I EN++ +S G+ + ++G++GSGKST++S +R +
Sbjct: 17 GGQMTVKDLTAKY--TEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNT- 73
Query: 891 SGTVLIDGYDIRTLNLRSLRRKIGLVQQEPALFSTTIYENIKYGNEDASEIELMKATKAA 950
G + IDG ++ L R+ G++ Q+ +FS T +N+ N S+ E+ K
Sbjct: 74 EGEIQIDGVSWDSITLEQWRKAFGVIPQKVFIFSGTFRKNLD-PNAAHSDQEIWKVADEV 132
Query: 951 NAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASEN 1010
I + P + D G LS G KQ + +AR++L ILLLDE ++ LD +
Sbjct: 133 GLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQ 192
Query: 1011 LIQEALDKLMEGRTTIMVAHRLSTIRNADKIAVLQQGKVAEIGSHEQLLRKENGIYKQLI 1070
+I+ L + T I+ R+ + D+ V+++ KV + S +L +
Sbjct: 193 IIRRTLKQAFADCTVILCEARIEAMLECDQFLVIEENKVRQYDSILELYHYPADRFVAGF 252
Query: 1071 RLQQDKNPEAME 1082
N ++
Sbjct: 253 IGSPKMNFLPVK 264
|
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} Length = 390 | Back alignment and structure |
|---|
Score = 219 bits (561), Expect = 1e-63
Identities = 74/297 (24%), Positives = 136/297 (45%), Gaps = 10/297 (3%)
Query: 204 GQIEFSEVCFAYPSRPHM--VFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTS 261
GQ+ ++ Y + EN++FS+ G+ +G +GSGKST++S RL
Sbjct: 18 GQMTVKDLTAKY--TEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNT-E 74
Query: 262 GKILLDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNILLGKEDASMDRVIEAAKAAN 321
G+I +DG S+ L+ R+ G++ Q+ +F+ + N L S + + A
Sbjct: 75 GEIQIDGVSWDSITLEQWRKAFGVIPQKVFIFSGTFRKN-LDPNAAHSDQEIWKVADEVG 133
Query: 322 AHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELI 381
S +E P + +GG LS G KQ + +AR+VL KILLLDE ++ LD + I
Sbjct: 134 LRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQI 193
Query: 382 VQRALEKIMSNRTTIVVAHRLSTVRDVDTIMVLKNGQVVESGTHVDLIS-KGGEYAALVN 440
++R L++ ++ T I+ R+ + + D +V++ +V + + ++L + A
Sbjct: 194 IRRTLKQAFADCTVILCEARIEAMLECDQFLVIEENKVRQYDSILELYHYPADRFVAGF- 252
Query: 441 LQSSEHLSNPSSICYSGSSRYSSFRDFPSSRRYDVEFESSKRRELQSSDQSFAPSPS 497
+ S + N + + ++ + P R V R ++ S P
Sbjct: 253 IGSPK--MNFLPVKVTATAIDQVQVELPMPNRQQVWLPVESRDVQVGANMSLGIRPE 307
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A Length = 229 | Back alignment and structure |
|---|
Score = 177 bits (452), Expect = 8e-51
Identities = 61/241 (25%), Positives = 111/241 (46%), Gaps = 25/241 (10%)
Query: 204 GQIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGK 263
++ V + V +++NF ++ G+ A G +G+GK++++ M+ EP+ GK
Sbjct: 5 TEVVMENVTAFWEEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGK 64
Query: 264 ILLDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNILLGKEDASMD-----RVIEAAK 318
I G ++ SQ + +I NI+ G D VI+A
Sbjct: 65 IKHSG-------------RISFCSQFSWIMPGTIKENIIFGVS---YDEYRYRSVIKAC- 107
Query: 319 AANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAE- 377
+ +GEGG LSGGQ+ RI++ARAV ++ + LLD LD
Sbjct: 108 -QLEEDI-SKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLT 165
Query: 378 SELIVQRALEKIMSNRTTIVVAHRLSTVRDVDTIMVLKNGQVVESGTHVDLISKGGEYAA 437
+ I + + K+M+N+T I+V ++ ++ D I++L G GT +L + ++++
Sbjct: 166 EKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQNLQPDFSS 225
Query: 438 L 438
Sbjct: 226 K 226
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A Length = 229 | Back alignment and structure |
|---|
Score = 169 bits (430), Expect = 8e-48
Identities = 62/241 (25%), Positives = 113/241 (46%), Gaps = 18/241 (7%)
Query: 832 KGNIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPIS 891
+ + NV+ + + +++N K+ G+ LAV G +G+GK++++ ++M +P
Sbjct: 4 TTEVVMENVTAFWEEGGTPVL-KDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSE 62
Query: 892 GTVLIDGYDIRTLNLRSLRRKIGLVQQEPALFSTTIYENIKYGNE-DASEIELMKATKAA 950
G + G +I Q + TI ENI +G D KA
Sbjct: 63 GKIKHSG-------------RISFCSQFSWIMPGTIKENIIFGVSYDEYRYR--SVIKAC 107
Query: 951 NAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTA-SE 1009
IS+ E +G+ G+ LSGGQ+ R+++ARA+ K+ + LLD LD +
Sbjct: 108 QLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEK 167
Query: 1010 NLIQEALDKLMEGRTTIMVAHRLSTIRNADKIAVLQQGKVAEIGSHEQLLRKENGIYKQL 1069
+ + + KLM +T I+V ++ ++ ADKI +L +G G+ +L + +L
Sbjct: 168 EIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQNLQPDFSSKL 227
Query: 1070 I 1070
+
Sbjct: 228 M 228
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} Length = 237 | Back alignment and structure |
|---|
Score = 174 bits (443), Expect = 2e-49
Identities = 73/255 (28%), Positives = 121/255 (47%), Gaps = 35/255 (13%)
Query: 204 GQIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGK 263
I F + + FS+ G A VG G GKS+++S + + G
Sbjct: 2 NSITVRNATFTWARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGH 61
Query: 264 ILLDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNILLGKEDASMD-----RVIEAAK 318
+ + G + V Q+ + S+ NIL G + ++ VI+A
Sbjct: 62 VAIKG-------------SVAYVPQQAWIQNDSLRENILFGCQ---LEEPYYRSVIQAC- 104
Query: 319 AANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAES 378
A E LP G +T++GE G LSGGQKQR+++ARAV N I L D+ SA+DA
Sbjct: 105 -ALLPDL-EILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAH- 161
Query: 379 ELIVQRAL-------EKIMSNRTTIVVAHRLSTVRDVDTIMVLKNGQVVESGTHVDLISK 431
V + + + ++ N+T I+V H +S + VD I+V+ G++ E G++ +L+++
Sbjct: 162 ---VGKHIFENVIGPKGMLKNKTRILVTHSMSYLPQVDVIIVMSGGKISEMGSYQELLAR 218
Query: 432 GGEYAALVNLQSSEH 446
G +A + +S H
Sbjct: 219 DGAFAEFLRTYASHH 233
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} Length = 237 | Back alignment and structure |
|---|
Score = 160 bits (408), Expect = 1e-44
Identities = 69/243 (28%), Positives = 129/243 (53%), Gaps = 21/243 (8%)
Query: 833 GNIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISG 892
+I +RN +F + T+ + + G +AVVGQ G GKS+++S ++ D + G
Sbjct: 2 NSITVRNATFTWARSDPPTL-NGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEG 60
Query: 893 TVLIDGYDIRTLNLRSLRRKIGLVQQEPALFSTTIYENIKYGNE-DASEIELMKATKAAN 951
V I G + V Q+ + + ++ ENI +G + + +A
Sbjct: 61 HVAIKG-------------SVAYVPQQAWIQNDSLRENILFGCQLEEPYYR--SVIQACA 105
Query: 952 AHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDT-ASEN 1010
+ +P G ++ +G++GV LSGGQKQRV++ARA+ N I L D+ SA+D ++
Sbjct: 106 LLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKH 165
Query: 1011 LIQEAL--DKLMEGRTTIMVAHRLSTIRNADKIAVLQQGKVAEIGSHEQLLRKENGIYKQ 1068
+ + + +++ +T I+V H +S + D I V+ GK++E+GS+++LL + +G + +
Sbjct: 166 IFENVIGPKGMLKNKTRILVTHSMSYLPQVDVIIVMSGGKISEMGSYQELLAR-DGAFAE 224
Query: 1069 LIR 1071
+R
Sbjct: 225 FLR 227
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* Length = 290 | Back alignment and structure |
|---|
Score = 172 bits (438), Expect = 4e-48
Identities = 70/293 (23%), Positives = 125/293 (42%), Gaps = 33/293 (11%)
Query: 187 HSSERPGDDGITLPKLAGQIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGK 246
+ ++ + FS V +++NF ++ G+ A G +G+GK
Sbjct: 22 FEKAKQNNNNRKTSNGDDSLSFSNFSLLGTP----VLKDINFKIERGQLLAVAGSTGAGK 77
Query: 247 STIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNILLGKE 306
++++ M+ EP+ GKI G ++ SQ + +I NI+ G
Sbjct: 78 TSLLMMIMGELEPSEGKIKHSG-------------RISFCSQNSWIMPGTIKENII-GVS 123
Query: 307 DASMD-----RVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRN 361
D VI+A + +GEGG LSGGQ+ RI++ARAV ++
Sbjct: 124 ---YDEYRYRSVIKAC--QLEEDI-SKFAEKDNIVLGEGGITLSGGQRARISLARAVYKD 177
Query: 362 PKILLLDEATSALDAE-SELIVQRALEKIMSNRTTIVVAHRLSTVRDVDTIMVLKNGQVV 420
+ LLD LD + I + + K+M+N+T I+V ++ ++ D I++L G
Sbjct: 178 ADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSY 237
Query: 421 ESGTHVDLISKGGEYAALVNLQSSEHLSNP---SSICYSGSSRYSSFRDFPSS 470
GT +L + ++++ + S + +SI R+S D P S
Sbjct: 238 FYGTFSELQNLRPDFSSKLMGCDSFDQFSAERRNSILTETLHRFSLEGDAPVS 290
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* Length = 290 | Back alignment and structure |
|---|
Score = 160 bits (407), Expect = 5e-44
Identities = 63/265 (23%), Positives = 115/265 (43%), Gaps = 23/265 (8%)
Query: 820 PDDPASKEVTEIKGNIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTV 879
+ +++ + ++ N S + +++N K+ G+ LAV G +G+GK+++
Sbjct: 26 KQNNNNRKTSNGDDSLSFSNFSLLGT-----PVLKDINFKIERGQLLAVAGSTGAGKTSL 80
Query: 880 ISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRKIGLVQQEPALFSTTIYENIKYGNE-DA 938
+ ++M +P G + G +I Q + TI ENI G D
Sbjct: 81 LMMIMGELEPSEGKIKHSG-------------RISFCSQNSWIMPGTIKENI-IGVSYDE 126
Query: 939 SEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLD 998
KA IS+ E +G+ G+ LSGGQ+ R+++ARA+ K+ + LLD
Sbjct: 127 YRYR--SVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLD 184
Query: 999 EATSALDTA-SENLIQEALDKLMEGRTTIMVAHRLSTIRNADKIAVLQQGKVAEIGSHEQ 1057
LD + + + + KLM +T I+V ++ ++ ADKI +L +G G+ +
Sbjct: 185 SPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSE 244
Query: 1058 LLRKENGIYKQLIRLQQDKNPEAME 1082
L +L+ A
Sbjct: 245 LQNLRPDFSSKLMGCDSFDQFSAER 269
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} Length = 263 | Back alignment and structure |
|---|
Score = 164 bits (416), Expect = 1e-45
Identities = 57/248 (22%), Positives = 101/248 (40%), Gaps = 32/248 (12%)
Query: 835 IELRNVSFKYPVRP-DITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGT 893
I+L+NV + + EN+NL+V+ G + ++G +GSGK+T++ + P SG
Sbjct: 2 IQLKNVGITLSGKGYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-PYSGN 59
Query: 894 VLIDGYDIRTLNLRSLRRKIGLVQQEPALFS--TTIYENIKYG----NEDASEI-ELMKA 946
+ I+G ++R +R I P + T+ + + D E++KA
Sbjct: 60 IFINGMEVR-----KIRNYIRYSTNLPEAYEIGVTVNDIVYLYEELKGLDRDLFLEMLKA 114
Query: 947 TKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDT 1006
K + R +LS GQ V + A+ P I+ LDE +D
Sbjct: 115 LKLGE--EILRRKLY-----------KLSAGQSVLVRTSLALASQPEIVGLDEPFENVDA 161
Query: 1007 ASENLIQEALDKLMEGRTTIMVAHRLST-IRNADKIAVLQQG-KVAEIGSHEQLLRKENG 1064
A ++I + + G+ I+V H L + A G ++ S +LL
Sbjct: 162 ARRHVISRYIKEY--GKEGILVTHELDMLNLYKEYKAYFLVGNRLQGPISVSELLESSIV 219
Query: 1065 IYKQLIRL 1072
++ L
Sbjct: 220 EGERNDAL 227
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} Length = 263 | Back alignment and structure |
|---|
Score = 159 bits (403), Expect = 8e-44
Identities = 47/234 (20%), Positives = 97/234 (41%), Gaps = 27/234 (11%)
Query: 206 IEFSEVCFAYPSRPH--MVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGK 263
I+ V + + EN+N V+ G+ +GP+GSGK+T++ + L P SG
Sbjct: 2 IQLKNVGITLSGKGYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGL-LPYSGN 59
Query: 264 ILLDGHDLKSLQLKWLREQMGLVSQEPALFA--TSIANNILLGKE--DASMDRVIEAAKA 319
I ++G +++ + R + + P + ++ + + L +E D +E KA
Sbjct: 60 IFINGMEVRKI-----RNYIRYSTNLPEAYEIGVTVNDIVYLYEELKGLDRDLFLEMLKA 114
Query: 320 ANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESE 379
L + + +LS GQ + + A+ P+I+ LDE +DA
Sbjct: 115 L-------KLGEEILRRKL---YKLSAGQSVLVRTSLALASQPEIVGLDEPFENVDAARR 164
Query: 380 LIVQRALEKIMSNRTTIVVAHRLSTVRDV-DTIMVL-KNGQVVESGTHVDLISK 431
++ R +++ + I+V H L + + ++ + +L+
Sbjct: 165 HVISRYIKEY--GKEGILVTHELDMLNLYKEYKAYFLVGNRLQGPISVSELLES 216
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} Length = 275 | Back alignment and structure |
|---|
Score = 164 bits (418), Expect = 1e-45
Identities = 65/246 (26%), Positives = 116/246 (47%), Gaps = 32/246 (13%)
Query: 835 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTV 894
+++ +++ Y + +N+ + G A++G +G GKST+ P SG +
Sbjct: 8 LKVEELNYNYS--DGTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRI 65
Query: 895 LIDGYDIRT--LNLRSLRRKIGLVQQEPA--LFSTTIYENIKYG--NEDASEIEL----M 944
L D I + LR IG+V Q+P LFS ++Y+++ +G N E E+
Sbjct: 66 LFDNKPIDYSRKGIMKLRESIGIVFQDPDNQLFSASVYQDVSFGAVNMKLPEDEIRKRVD 125
Query: 945 KATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSAL 1004
A K + H LS GQK+RVAIA ++ P +L+LDE T+ L
Sbjct: 126 NALKRTGIEHLKDKPT-----H------CLSFGQKKRVAIAGVLVMEPKVLILDEPTAGL 174
Query: 1005 DTASENLIQEALDKLME--GRTTIMVAHRLSTI-RNADKIAVLQQGKVA------EIGSH 1055
D + I + L ++ + G T I+ H + + D + V+++G+V E+ +
Sbjct: 175 DPMGVSEIMKLLVEMQKELGITIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFAE 234
Query: 1056 EQLLRK 1061
++++RK
Sbjct: 235 KEVIRK 240
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} Length = 275 | Back alignment and structure |
|---|
Score = 143 bits (363), Expect = 3e-38
Identities = 62/233 (26%), Positives = 108/233 (46%), Gaps = 27/233 (11%)
Query: 206 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKIL 265
++ E+ + Y + +N ++ G+ A +G +G GKST+ + +P+SG+IL
Sbjct: 8 LKVEELNYNYSDG-THALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRIL 66
Query: 266 LDGHDLKSLQ--LKWLREQMGLVSQEPA--LFATSIAN-------NILLGKEDASMDRVI 314
D + + + LRE +G+V Q+P LF+ S+ N+ L +++ RV
Sbjct: 67 FDNKPIDYSRKGIMKLRESIGIVFQDPDNQLFSASVYQDVSFGAVNMKLPEDEIR-KRVD 125
Query: 315 EAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSAL 374
A K + LS GQK+R+AIA ++ PK+L+LDE T+ L
Sbjct: 126 NALKRTGIEHLKDKPTH-----------CLSFGQKKRVAIAGVLVMEPKVLILDEPTAGL 174
Query: 375 DAESELIVQRALEKIM--SNRTTIVVAHRLSTV-RDVDTIMVLKNGQVVESGT 424
D + + L ++ T I+ H + V D + V+K G+V+ G
Sbjct: 175 DPMGVSEIMKLLVEMQKELGITIIIATHDIDIVPLYCDNVFVMKEGRVILQGN 227
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} Length = 266 | Back alignment and structure |
|---|
Score = 163 bits (415), Expect = 3e-45
Identities = 72/236 (30%), Positives = 117/236 (49%), Gaps = 19/236 (8%)
Query: 835 IELRNVSFKYPVRP--DITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISG 892
IE+ NVS + + EN++L ++ G L V G +GSGKST++ +V +P SG
Sbjct: 3 IEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSG 62
Query: 893 TVLIDGYDIRTLNLRSLRRKIGLVQQEPA--LFSTTIYENIKYG--NEDASEIELMKATK 948
VL DG +RR IG+ Q P F+ +++ + + N + K
Sbjct: 63 DVLYDGERK---KGYEIRRNIGIAFQYPEDQFFAERVFDEVAFAVKNFYPDRDPVPLVKK 119
Query: 949 AANAHGFISRMPEGYQSHVGDRGV-QLSGGQKQRVAIARAILKNPSILLLDEATSALDTA 1007
A G + ++ DR LSGG+K+RVAIA I+ P IL+LDE LD
Sbjct: 120 AMEFVGL---DFDSFK----DRVPFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDRE 172
Query: 1008 SENLIQEALDKLME-GRTTIMVAHRLSTI-RNADKIAVLQQGKVAEIGSHEQLLRK 1061
+ + ++K G+T I+++H + T+ + D++ VL++GK G+ + L K
Sbjct: 173 GKTDLLRIVEKWKTLGKTVILISHDIETVINHVDRVVVLEKGKKVFDGTRMEFLEK 228
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} Length = 266 | Back alignment and structure |
|---|
Score = 143 bits (364), Expect = 2e-38
Identities = 69/234 (29%), Positives = 111/234 (47%), Gaps = 28/234 (11%)
Query: 205 QIEFSEVCFAYPSRP---HMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTS 261
+IE V + EN++ ++ G+ G +GSGKST++ +V L EPTS
Sbjct: 2 RIEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTS 61
Query: 262 GKILLDGHDLKSLQLKWLREQMGLVSQEPA--LFATSIANNIL-----LGKEDASMDRVI 314
G +L DG K +R +G+ Q P FA + + + + + V
Sbjct: 62 GDVLYDGERKK---GYEIRRNIGIAFQYPEDQFFAERVFDEVAFAVKNFYPDRDPVPLVK 118
Query: 315 EAAKAAN--AHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATS 372
+A + SF + +P LSGG+K+R+AIA ++ P IL+LDE
Sbjct: 119 KAMEFVGLDFDSFKDRVP-----------FFLSGGEKRRVAIASVIVHEPDILILDEPLV 167
Query: 373 ALDAESELIVQRALEKI-MSNRTTIVVAHRLSTV-RDVDTIMVLKNGQVVESGT 424
LD E + + R +EK +T I+++H + TV VD ++VL+ G+ V GT
Sbjct: 168 GLDREGKTDLLRIVEKWKTLGKTVILISHDIETVINHVDRVVVLEKGKKVFDGT 221
|
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C Length = 366 | Back alignment and structure |
|---|
Score = 160 bits (407), Expect = 3e-43
Identities = 81/251 (32%), Positives = 128/251 (50%), Gaps = 24/251 (9%)
Query: 835 IELRNVSFKYPVR-PDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGT 893
I+L N++ + I N++L V AG+ V+G SG+GKST+I V P G+
Sbjct: 25 IKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGS 84
Query: 894 VLIDGYDIRTLN---LRSLRRKIGLVQQEPALFST-TIYENIKYGNEDASEIELMKATKA 949
VL+DG ++ TL+ L RR+IG++ Q L S+ T++ N+ +EL K
Sbjct: 85 VLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALP------LELDNTPKD 138
Query: 950 ANAHGFISRMPE-----GYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSAL 1004
R+ E G LSGGQKQRVAIARA+ NP +LL D+ATSAL
Sbjct: 139 EVK----RRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDQATSAL 194
Query: 1005 DTASENLIQEALDKLME--GRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGSHEQLLRK 1061
D A+ I E L + G T +++ H + ++ D +AV+ G++ E + ++
Sbjct: 195 DPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVFSH 254
Query: 1062 -ENGIYKQLIR 1071
+ + ++ I+
Sbjct: 255 PKTPLAQKFIQ 265
|
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C Length = 366 | Back alignment and structure |
|---|
Score = 154 bits (390), Expect = 7e-41
Identities = 89/286 (31%), Positives = 140/286 (48%), Gaps = 28/286 (9%)
Query: 206 IEFSEVC--FAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGK 263
I+ S + F +R N++ V AG+ + +G SG+GKST+I V L PT G
Sbjct: 25 IKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGS 84
Query: 264 ILLDGHDLKSL---QLKWLREQMGLVSQEPALFAT-SIANNILLGKEDASMDRVIEAAKA 319
+L+DG +L +L +L R Q+G++ Q L ++ ++ N+ L E + + +
Sbjct: 85 VLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRV 144
Query: 320 ANAHSFVEGLPD---GYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDA 376
S V GL D Y + LSGGQKQR+AIARA+ NPK+LL D+ATSALD
Sbjct: 145 TELLSLV-GLGDKHDSYPSN-------LSGGQKQRVAIARALASNPKVLLCDQATSALDP 196
Query: 377 ESELIVQRALEKIMSNR----TTIVVAHRLSTVRDV-DTIMVLKNGQVVESGTHVDLISK 431
+ + L+ I NR T +++ H + V+ + D + V+ NG+++E T ++ S
Sbjct: 197 ATTRSILELLKDI--NRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVFSH 254
Query: 432 GGEYAALVNLQSSEHLSNPSSICYSGSSRYSSFRDFPSSRRYDVEF 477
A +QS+ HL P R + +EF
Sbjct: 255 PKTPLAQKFIQSTLHLDIPEDY----QERLQAEPFTDCVPMLRLEF 296
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} Length = 279 | Back alignment and structure |
|---|
Score = 157 bits (399), Expect = 4e-43
Identities = 57/246 (23%), Positives = 107/246 (43%), Gaps = 29/246 (11%)
Query: 835 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTV 894
I+L + TI + ++ +++ G + G +G+GK+T+++++ + SGTV
Sbjct: 22 IQLDQIGRMKQ---GKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTV 78
Query: 895 LIDGYDI--RTLNLRSLRRKIGLVQQEPAL---FSTTIYENI---KYGN----EDASEIE 942
+ G + ++R+ IG V + + + + + +D +
Sbjct: 79 NLFGKMPGKVGYSAETVRQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEI 138
Query: 943 LMKATKAANAHGFISRMPEGYQSHVGDRGV-QLSGGQKQRVAIARAILKNPSILLLDEAT 1001
+A + G S + + LS G+KQRV IARA++ P +L+LDE
Sbjct: 139 RNEAHQLLKLVGM---------SAKAQQYIGYLSTGEKQRVMIARALMGQPQVLILDEPA 189
Query: 1002 SALDTASENLIQEALDKLME---GRTTIMVAHRLSTIRNA-DKIAVLQQGKVAEIGSHEQ 1057
+ LD + + LD L + I V H + I KI +L+ G+ + G+ E
Sbjct: 190 AGLDFIARESLLSILDSLSDSYPTLAMIYVTHFIEEITANFSKILLLKDGQSIQQGAVED 249
Query: 1058 LLRKEN 1063
+L EN
Sbjct: 250 ILTSEN 255
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} Length = 279 | Back alignment and structure |
|---|
Score = 146 bits (371), Expect = 3e-39
Identities = 52/238 (21%), Positives = 112/238 (47%), Gaps = 18/238 (7%)
Query: 206 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKIL 265
I+ ++ + + + +++ + G + G +G+GK+T+++++ TSG +
Sbjct: 22 IQLDQIGRMKQGKT--ILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVN 79
Query: 266 LDGHDLKSL--QLKWLREQMGLVSQEPAL---FATSIANNILLGKEDAS-MDRVIEAAKA 319
L G + + +R+ +G VS + + ++ G + + + I+
Sbjct: 80 LFGKMPGKVGYSAETVRQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIR 139
Query: 320 ANAHSFVE--GLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAE 377
AH ++ G+ Q +G LS G+KQR+ IARA++ P++L+LDE + LD
Sbjct: 140 NEAHQLLKLVGMSAKAQQYIG----YLSTGEKQRVMIARALMGQPQVLILDEPAAGLDFI 195
Query: 378 SELIVQRALEKIMSNRTT---IVVAHRLSTVRD-VDTIMVLKNGQVVESGTHVDLISK 431
+ + L+ + + T I V H + + I++LK+GQ ++ G D+++
Sbjct: 196 ARESLLSILDSLSDSYPTLAMIYVTHFIEEITANFSKILLLKDGQSIQQGAVEDILTS 253
|
| >2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* Length = 263 | Back alignment and structure |
|---|
Score = 140 bits (354), Expect = 3e-37
Identities = 76/220 (34%), Positives = 110/220 (50%), Gaps = 33/220 (15%)
Query: 222 VFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDL--KSLQLKWL 279
V + +N + G+ +GPSGSGKST + + L + G+I++DG +L K L +
Sbjct: 39 VLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKV 98
Query: 280 REQMGLVSQEPALFA-TSIANNILLG--------KEDASMDRVIEAAKAANAHSFVE--G 328
RE++G+V Q LF ++ NNI L +E A A A ++ G
Sbjct: 99 REEVGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKA----------EAKAMELLDKVG 148
Query: 329 LPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAE--SE-LIVQRA 385
L D + LSGGQ QR+AIARA+ PKI+L DE TSALD E E L V +
Sbjct: 149 LKD----KAHAYPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQ 204
Query: 386 LEKIMSNRTTIVVAHRLSTVRDV-DTIMVLKNGQVVESGT 424
L T +VV H + R+V D ++ + G ++E G
Sbjct: 205 LAN--EGMTMVVVTHEMGFAREVGDRVLFMDGGYIIEEGK 242
|
| >2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* Length = 263 | Back alignment and structure |
|---|
Score = 131 bits (331), Expect = 4e-34
Identities = 71/237 (29%), Positives = 115/237 (48%), Gaps = 26/237 (10%)
Query: 835 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTV 894
I++ + + + + + +N+ + G + V+G SGSGKST + + D G +
Sbjct: 25 IDVHQLKKSFG---SLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEI 81
Query: 895 LIDGYDI--RTLNLRSLRRKIGLVQQEPALFS-TTIYENIKYGNEDASEIELMKATKA-- 949
+IDG ++ + NL +R ++G+V Q LF T+ NI +++ K +
Sbjct: 82 IIDGINLKAKDTNLNKVREEVGMVFQRFNLFPHMTVLNNITLA-----PMKVRKWPREKA 136
Query: 950 -ANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTAS 1008
A A + ++ G + LSGGQ QRVAIARA+ P I+L DE TSALD
Sbjct: 137 EAKAMELLDKV--GLKDKAHAYPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALD--P 192
Query: 1009 ENLIQEALDKLM-----EGRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGSHEQLL 1059
E ++ E L +M EG T ++V H + R D++ + G + E G E L
Sbjct: 193 E-MVGEVLS-VMKQLANEGMTMVVVTHEMGFAREVGDRVLFMDGGYIIEEGKPEDLF 247
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} Length = 253 | Back alignment and structure |
|---|
Score = 136 bits (345), Expect = 4e-36
Identities = 63/241 (26%), Positives = 109/241 (45%), Gaps = 37/241 (15%)
Query: 835 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTV 894
+ + N+ F Y +F+ LN ++ G LAV+GQ+G GKST++ L++ + PI G +
Sbjct: 5 LSVENLGFYYQAEN--FLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKI 62
Query: 895 LIDGYDIRTLNLRSLRRKIGLV-QQEPALFSTTIYENIKYG-------NEDASEIELMKA 946
+ + IG V Q + F+ ++ + + G + A
Sbjct: 63 EVY-------------QSIGFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVA 109
Query: 947 TKAANAHGFISRMPEGYQSHVGDRGV-QLSGGQKQRVAIARAILKNPSILLLDEATSALD 1005
+A + +H+ R LSGGQ+Q + IARAI ++LLDE TSALD
Sbjct: 110 MQALDYLNL---------THLAKREFTSLSGGQRQLILIARAIASECKLILLDEPTSALD 160
Query: 1006 TASENLIQEALDKLM--EGRTTIMVAHRLST-IRNADKIAVLQQGKVAEIGSHEQLLRKE 1062
A+++++ L L + T + H+ + + A+K +L + G +L E
Sbjct: 161 LANQDIVLSLLIDLAQSQNMTVVFTTHQPNQVVAIANKTLLLNKQNFKF-GETRNILTSE 219
Query: 1063 N 1063
N
Sbjct: 220 N 220
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} Length = 253 | Back alignment and structure |
|---|
Score = 119 bits (300), Expect = 4e-30
Identities = 62/234 (26%), Positives = 102/234 (43%), Gaps = 42/234 (17%)
Query: 206 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKIL 265
+ + F Y + + +F+ LNF ++ G A +G +G GKST++ ++ ++ P GKI
Sbjct: 5 LSVENLGFYYQAE-NFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIE 63
Query: 266 LDGHDLKSLQLKWLREQMGLVSQEP-ALFATSIANNILLG------------KEDASMDR 312
+ +G V Q + FA S+ + +L+G D
Sbjct: 64 VYQ-------------SIGFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHD--YQV 108
Query: 313 VIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATS 372
++A N + + T LSGGQ+Q I IARA+ K++LLDE TS
Sbjct: 109 AMQALDYLNLTHLAK-------REF----TSLSGGQRQLILIARAIASECKLILLDEPTS 157
Query: 373 ALDAESELIVQRALEKIM--SNRTTIVVAHRLSTVRDVDTIMVLKNGQVVESGT 424
ALD ++ IV L + N T + H+ + V + +L N Q + G
Sbjct: 158 ALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPNQVVAIANKTLLLNKQNFKFGE 211
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} Length = 355 | Back alignment and structure |
|---|
Score = 138 bits (351), Expect = 6e-36
Identities = 67/233 (28%), Positives = 113/233 (48%), Gaps = 31/233 (13%)
Query: 835 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTV 894
IE V YP ++ ++ G + ++G SGSGK+T++ L+ P G V
Sbjct: 15 IEFVGVEKIYP--GGARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDV 72
Query: 895 LIDGYDIRTLNLRSLRRKIGLVQQEPALFS-TTIYENIKYG----NEDASEIE--LMKAT 947
I G + L + +R +GLV Q ALF T+Y+N+ +G E++ + +
Sbjct: 73 WIGGKRVTDLPPQ--KRNVGLVFQNYALFQHMTVYDNVSFGLREKRVPKDEMDARVRELL 130
Query: 948 KAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTA 1007
+ + +R P +LSGGQ+QRVA+ARA+ P +LL DE +A+DT
Sbjct: 131 RFMRLESYANRFPH-----------ELSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQ 179
Query: 1008 SENLIQEALDKLME--GRTTIMVAH----RLSTIRNADKIAVLQQGKVAEIGS 1054
++ + ++ + G T++ V H L AD++ VL +G V + G+
Sbjct: 180 IRRELRTFVRQVHDEMGVTSVFVTHDQEEALEV---ADRVLVLHEGNVEQFGT 229
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} Length = 355 | Back alignment and structure |
|---|
Score = 124 bits (313), Expect = 7e-31
Identities = 64/239 (26%), Positives = 112/239 (46%), Gaps = 36/239 (15%)
Query: 206 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKIL 265
IEF V YP ++F + G+ +GPSGSGK+TI+ ++ L PT G +
Sbjct: 15 IEFVGVEKIYPGG-ARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVW 73
Query: 266 LDGHDLKSLQLKWLREQMGLVSQEPALFA-TSIANNILLGKEDASMDRVIEAAKAANAHS 324
+ G + L + + +GLV Q ALF ++ +N+ G + + + A+
Sbjct: 74 IGGKRVTDLPPQ--KRNVGLVFQNYALFQHMTVYDNVSFGLREKRVPKDEMDARVRELLR 131
Query: 325 FV--EGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDA------ 376
F+ E + + + LSGGQ+QR+A+ARA+ P++LL DE +A+D
Sbjct: 132 FMRLESYANRFPHE-------LSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRREL 184
Query: 377 ESELI-VQRALEKIMSNRTTIVVAH------RLSTVRDVDTIMVLKNGQVVESGTHVDL 428
+ + V + + T++ V H ++ D ++VL G V + GT ++
Sbjct: 185 RTFVRQVHDEM-GV----TSVFVTHDQEEALEVA-----DRVLVLHEGNVEQFGTPEEV 233
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 134 bits (341), Expect = 1e-35
Identities = 69/220 (31%), Positives = 110/220 (50%), Gaps = 26/220 (11%)
Query: 855 NLNLKVSAGRS-LAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRKI 913
LN+ GR ++G +G+GKS + L+ P G V ++G DI L RR I
Sbjct: 15 RLNVDFEMGRDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADIT--PLPPERRGI 72
Query: 914 GLVQQEPALFS-TTIYENIKYG--NEDASEIE--LMKATKAANAHGFISRMPEGYQSHVG 968
G V Q+ ALF ++Y NI YG N + E + + + + + R P
Sbjct: 73 GFVPQDYALFPHLSVYRNIAYGLRNVERVERDRRVREMAEKLGIAHLLDRKPA------- 125
Query: 969 DRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLME--GRTTI 1026
+LSGG++QRVA+ARA++ P +LLLDE SA+D ++ ++ E L + +
Sbjct: 126 ----RLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPIL 181
Query: 1027 MVAHRLS---TIRNADKIAVLQQGKVAEIGSHEQLLRKEN 1063
V H L + AD++AV+ G++ E G ++L +N
Sbjct: 182 HVTHDLIEAAML--ADEVAVMLNGRIVEKGKLKELFSAKN 219
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 123 bits (312), Expect = 7e-32
Identities = 66/223 (29%), Positives = 107/223 (47%), Gaps = 42/223 (18%)
Query: 225 NLNFSVDAGKTF-AFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQM 283
LN + G+ + +GP+G+GKS + ++ + +P G++ L+G D+ L + R +
Sbjct: 15 RLNVDFEMGRDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPE--RRGI 72
Query: 284 GLVSQEPALFA-TSIANNILLG----KEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVG 338
G V Q+ ALF S+ NI G + RV E A+ ++ P
Sbjct: 73 GFVPQDYALFPHLSVYRNIAYGLRNVERVERDRRVREMAEKLGIAHLLDRKPA------- 125
Query: 339 EGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDA------ESELI-VQRALEKIMS 391
+LSGG++QR+A+ARA++ P++LLLDE SA+D EL VQR
Sbjct: 126 ----RLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREF----- 176
Query: 392 NRTTIVVAH------RLSTVRDVDTIMVLKNGQVVESGTHVDL 428
+ + V H L+ D + V+ NG++VE G +L
Sbjct: 177 DVPILHVTHDLIEAAMLA-----DEVAVMLNGRIVEKGKLKEL 214
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A Length = 224 | Back alignment and structure |
|---|
Score = 133 bits (338), Expect = 2e-35
Identities = 58/227 (25%), Positives = 101/227 (44%), Gaps = 22/227 (9%)
Query: 835 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTV 894
+ N+ I + ++L V G ++++G SGSGKST++ ++ P G V
Sbjct: 5 LRAENIKKVIR---GYEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKV 61
Query: 895 LIDGYDIRTLNLRSL----RRKIGLV-QQEPALFSTTIYENI----KYGNEDASEIELMK 945
++G ++ N + L RK+G V Q + T EN+ + E + +
Sbjct: 62 FLEGKEVDYTNEKELSLLRNRKLGFVFQFHYLIPELTALENVIVPMLKMGKPKKEAK-ER 120
Query: 946 ATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALD 1005
+ G ++ S + +LSGG++QRVAIARA+ P +L DE T LD
Sbjct: 121 GEYLLSELGLGDKL-----SR---KPYELSGGEQQRVAIARALANEPILLFADEPTGNLD 172
Query: 1006 TASENLIQEALDKL-MEGRTTIMVAHRLSTIRNADKIAVLQQGKVAE 1051
+A+ + + K+ G + +MV H + ++ GKV
Sbjct: 173 SANTKRVMDIFLKINEGGTSIVMVTHERELAELTHRTLEMKDGKVVG 219
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A Length = 224 | Back alignment and structure |
|---|
Score = 111 bits (280), Expect = 1e-27
Identities = 59/211 (27%), Positives = 101/211 (47%), Gaps = 11/211 (5%)
Query: 222 VFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSL---QLKW 278
+ + ++ SV G+ + +G SGSGKST++ ++ L PT GK+ L+G ++ +L
Sbjct: 19 ILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSL 78
Query: 279 LR-EQMGLVSQEPALFA-TSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQ 336
LR ++G V Q L + N+++ + + S + GL D +
Sbjct: 79 LRNRKLGFVFQFHYLIPELTALENVIVPMLKMGKPKKEAKERGEYLLSEL-GLGD----K 133
Query: 337 VGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKI-MSNRTT 395
+ +LSGG++QR+AIARA+ P +L DE T LD+ + V KI +
Sbjct: 134 LSRKPYELSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKINEGGTSI 193
Query: 396 IVVAHRLSTVRDVDTIMVLKNGQVVESGTHV 426
++V H + +K+G+VV T V
Sbjct: 194 VMVTHERELAELTHRTLEMKDGKVVGEITRV 224
|
| >1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 Length = 262 | Back alignment and structure |
|---|
Score = 134 bits (340), Expect = 3e-35
Identities = 66/233 (28%), Positives = 111/233 (47%), Gaps = 43/233 (18%)
Query: 220 HMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSL----- 274
H V + ++ AG + +G SGSGKST + + L +P+ G I+++G ++ +
Sbjct: 19 HEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDG 78
Query: 275 --------QLKWLREQMGLVSQEPALFA-TSIANNILLG--------KEDASMDRVIEAA 317
QL+ LR ++ +V Q L++ ++ N++ K DA
Sbjct: 79 QLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDA--------- 129
Query: 318 KAANAHSFVE--GLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALD 375
A ++ G+ + Q + LSGGQ+QR++IARA+ P +LL DE TSALD
Sbjct: 130 -RERALKYLAKVGIDERAQGKYP---VHLSGGQQQRVSIARALAMEPDVLLFDEPTSALD 185
Query: 376 AE--SE-LIVQRALEKIMSNRTTIVVAHRLSTVRDV-DTIMVLKNGQVVESGT 424
E E L + + L + +T +VV H + R V ++ L G++ E G
Sbjct: 186 PELVGEVLRIMQQLAE--EGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGD 236
|
| >1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 Length = 262 | Back alignment and structure |
|---|
Score = 129 bits (327), Expect = 1e-33
Identities = 74/257 (28%), Positives = 126/257 (49%), Gaps = 54/257 (21%)
Query: 835 IELRNV--SFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISG 892
+ + ++ + + + ++L+ AG ++++G SGSGKST + + P G
Sbjct: 7 LHVIDLHKRYG-----GHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEG 61
Query: 893 TVLIDGYDIRTL-------------NLRSLRRKIGLVQQEPALFS-TTIYENIKYGNEDA 938
++++G +I + LR LR ++ +V Q L+S T+ EN+
Sbjct: 62 AIIVNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEA---- 117
Query: 939 SEIELMKATKA---ANAHGFISRMPEGYQSHVG--DRG-----VQLSGGQKQRVAIARAI 988
I+++ +K A ++++ VG +R V LSGGQ+QRV+IARA+
Sbjct: 118 -PIQVLGLSKHDARERALKYLAK--------VGIDERAQGKYPVHLSGGQQQRVSIARAL 168
Query: 989 LKNPSILLLDEATSALDTASENLIQEALDKLM-----EGRTTIMVAHRLSTIRN-ADKIA 1042
P +LL DE TSALD E L+ E L +M EG+T ++V H + R+ + +
Sbjct: 169 AMEPDVLLFDEPTSALD--PE-LVGEVLR-IMQQLAEEGKTMVVVTHEMGFARHVSSHVI 224
Query: 1043 VLQQGKVAEIGSHEQLL 1059
L QGK+ E G EQ+
Sbjct: 225 FLHQGKIEEEGDPEQVF 241
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 141 bits (357), Expect = 5e-35
Identities = 58/280 (20%), Positives = 104/280 (37%), Gaps = 34/280 (12%)
Query: 807 PVFGILYRKTAIQPDD-PASKEVTEIKGNIELRNVSFKYPVRPDITIFENLNLKVSAGRS 865
P + +R A+Q A++++ + S K + + S
Sbjct: 323 PAENLRFRTEALQFRIADATEDLQNDSASRAFSYPSLKK--TQGDFVLNVEEGEFSDSEI 380
Query: 866 LAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRKIGLVQQEP--ALF 923
L ++G++G+GK+T+I L+ P G + LN+ +KI LF
Sbjct: 381 LVMMGENGTGKTTLIKLLAGALKPDEGQDIPK------LNVSMKPQKIAPKFPGTVRQLF 434
Query: 924 STTIYENIKYGNEDASEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVA 983
I + +++ K I + + LSGG+ QRVA
Sbjct: 435 FKKIRGQFL-NPQFQTDV-----VKPLRIDDIIDQEVQ-----------HLSGGELQRVA 477
Query: 984 IARAILKNPSILLLDEATSALDTASENLIQEALDKLME--GRTTIMVAHRLSTIRN-ADK 1040
I A+ I L+DE ++ LD+ + + + + + +T +V H ADK
Sbjct: 478 IVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFIVEHDFIMATYLADK 537
Query: 1041 IAVLQQGKVAEI--GSHEQLLRKENGIYKQL-IRLQQDKN 1077
+ V + + E LL N K L + ++D N
Sbjct: 538 VIVFEGIPSKNAHARAPESLLTGCNRFLKNLNVTFRRDPN 577
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 136 bits (344), Expect = 2e-33
Identities = 46/250 (18%), Positives = 88/250 (35%), Gaps = 32/250 (12%)
Query: 181 IIKENSHSSERPGDDGITLPKLAGQIEFSEVCFAYPS----RPHMVFENLNFSVDAGKTF 236
I EN I Q + + F+YPS + V +
Sbjct: 322 IPAENLRFRTEALQFRIADATEDLQNDSASRAFSYPSLKKTQGDFVLNVEEGEFSDSEIL 381
Query: 237 AFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGLVSQEP--ALFA 294
+G +G+GK+T+I ++ +P G+ + L + +++ LF
Sbjct: 382 VMMGENGTGKTTLIKLLAGALKPDEGQDIPK------LNVSMKPQKIAPKFPGTVRQLFF 435
Query: 295 TSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAI 354
I L + + K ++ LSGG+ QR+AI
Sbjct: 436 KKIRGQFL------NPQFQTDVVKPLRIDDIIDQEVQ-----------HLSGGELQRVAI 478
Query: 355 ARAVLRNPKILLLDEATSALDAESELIVQRALEKIM--SNRTTIVVAHRLSTVRDV-DTI 411
A+ I L+DE ++ LD+E +I + + + + + +T +V H + D +
Sbjct: 479 VLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFIVEHDFIMATYLADKV 538
Query: 412 MVLKNGQVVE 421
+V +
Sbjct: 539 IVFEGIPSKN 548
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 129 bits (326), Expect = 4e-31
Identities = 43/246 (17%), Positives = 90/246 (36%), Gaps = 38/246 (15%)
Query: 197 ITLPKLAGQIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRL 256
I LP + V Y + + + + G+ VG +G GKST + ++
Sbjct: 73 INLPT----NLEAHVTHRYSANSFKL--HRLPTPRPGQVLGLVGTNGIGKSTALKILAGK 126
Query: 257 YEPTSGKI-----------LLDGHDLKSLQLKWLREQMGLVSQEP--ALFATSIANNI-- 301
+P G+ G +L++ K L + + + + +I +
Sbjct: 127 QKPNLGRFDDPPEWQEIIKYFRGSELQNYFTKMLEDDIKAIIKPQYVDNIPRAIKGPVQK 186
Query: 302 ---LLGKEDASM-DRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARA 357
LL + V K + ++ + +LSGG+ QR AI +
Sbjct: 187 VGELLKLRMEKSPEDVKRYIKILQLENVLKRDIE-----------KLSGGELQRFAIGMS 235
Query: 358 VLRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVA-HRLSTVRDV-DTIMVLK 415
++ + + DE +S LD + L + + +++ ++ H LS + + D + ++
Sbjct: 236 CVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVICVEHDLSVLDYLSDFVCIIY 295
Query: 416 NGQVVE 421
V
Sbjct: 296 GVPSVY 301
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 127 bits (321), Expect = 2e-30
Identities = 44/231 (19%), Positives = 91/231 (39%), Gaps = 21/231 (9%)
Query: 835 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVM--------RF 886
+V+ +Y + + G+ L +VG +G GKST + ++ RF
Sbjct: 78 NLEAHVTHRYSAN---SFKLHRLPTPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRF 134
Query: 887 YDPISGTVLI---DGYDIRTLNLRSLRRKIGLVQQEPALFSTTIYENIKYGNEDASEIEL 943
DP +I G +++ + L I + + + I IK + E+
Sbjct: 135 DDPPEWQEIIKYFRGSELQNYFTKMLEDDIKAIIKPQ--YVDNIPRAIKGPVQKVGELLK 192
Query: 944 MKATKAANAHGFISRMPEGYQSHVGDRGV-QLSGGQKQRVAIARAILKNPSILLLDEATS 1002
++ K+ ++ + +V R + +LSGG+ QR AI + ++ + + DE +S
Sbjct: 193 LRMEKSPEDVKRYIKILQ--LENVLKRDIEKLSGGELQRFAIGMSCVQEADVYMFDEPSS 250
Query: 1003 ALDTASENLIQEALDKLMEGRTTIMVA-HRLSTIRN-ADKIAVLQQGKVAE 1051
LD + + L+ ++ H LS + +D + ++
Sbjct: 251 YLDVKQRLNAAQIIRSLLAPTKYVICVEHDLSVLDYLSDFVCIIYGVPSVY 301
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* Length = 235 | Back alignment and structure |
|---|
Score = 132 bits (335), Expect = 6e-35
Identities = 75/236 (31%), Positives = 113/236 (47%), Gaps = 29/236 (12%)
Query: 835 IELRNVSFKYPV-RPDITIFENLNLKVSAGRSLAVVGQSGSGKST---VISLVMRFYDPI 890
++L+NV+ Y + I +N+NL + G ++++G SGSGKST +I + + P
Sbjct: 2 VKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDK---PT 58
Query: 891 SGTVLIDGYDIRTLNLRSL----RRKIGLV-QQEPALFSTTIYENI-------KYGNEDA 938
G V ID L+ L R KIG V QQ + T EN+ G
Sbjct: 59 EGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSG 118
Query: 939 SEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLD 998
E +A + R + QLSGGQ+QRVAIARA+ NP I+L D
Sbjct: 119 EERR-KRALECLKMAELEERFANHKPN-------QLSGGQQQRVAIARALANNPPIILAD 170
Query: 999 EATSALDTASENLIQEALDKL--MEGRTTIMVAHRLSTIRNADKIAVLQQGKVAEI 1052
+ T ALD+ + I + L KL +G+T ++V H ++ R ++I L+ G+V
Sbjct: 171 QPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVERE 226
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* Length = 235 | Back alignment and structure |
|---|
Score = 114 bits (287), Expect = 2e-28
Identities = 66/228 (28%), Positives = 120/228 (52%), Gaps = 16/228 (7%)
Query: 206 IEFSEVCFAYPSRPHMVF--ENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGK 263
++ V Y +++ +N+N ++ G+ + +GPSGSGKST+++++ L +PT G+
Sbjct: 2 VKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGE 61
Query: 264 ILLDGHDLKSL---QLKWLR-EQMGLVSQEPALFA-TSIANNI---LLGKEDASMDRVIE 315
+ +D L +L +R +++G V Q+ L + N+ L+ K +M
Sbjct: 62 VYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEER 121
Query: 316 AAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALD 375
+A L + + QLSGGQ+QR+AIARA+ NP I+L D+ T ALD
Sbjct: 122 RKRALECLKMA-ELEERFANHKP---NQLSGGQQQRVAIARALANNPPIILADQPTWALD 177
Query: 376 AESELIVQRALEKI--MSNRTTIVVAHRLSTVRDVDTIMVLKNGQVVE 421
+++ + + L+K+ +T +VV H ++ R + I+ LK+G+V
Sbjct: 178 SKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVER 225
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 Length = 348 | Back alignment and structure |
|---|
Score = 135 bits (342), Expect = 1e-34
Identities = 70/236 (29%), Positives = 116/236 (49%), Gaps = 42/236 (17%)
Query: 835 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTV 894
IE+ ++S K+ +NL+LKV +G ++G +G+GK+ + L+ F+ P SG +
Sbjct: 2 IEIESLSRKW----KNFSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRI 57
Query: 895 LIDGYDIRTLNLRSLRRKIGLVQQEPALFS-TTIYENIKYG--------NEDASEI-ELM 944
L+DG D+ +L + I V Q +LF + +N+++G + + +
Sbjct: 58 LLDGKDVT--DLSPEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDL 115
Query: 945 KATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSAL 1004
K + R P LSGG++QRVA+ARA++ NP ILLLDE SAL
Sbjct: 116 KIE------HLLDRNPL-----------TLSGGEQQRVALARALVTNPKILLLDEPLSAL 158
Query: 1005 DTASENLIQEALDKLME--GRTTIMVAH----RLSTIRNADKIAVLQQGKVAEIGS 1054
D ++ +E L L + T + + H AD+IAV+ GK+ ++G
Sbjct: 159 DPRTQENAREMLSVLHKKNKLTVLHITHDQTEARIM---ADRIAVVMDGKLIQVGK 211
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 Length = 348 | Back alignment and structure |
|---|
Score = 119 bits (301), Expect = 2e-29
Identities = 61/220 (27%), Positives = 108/220 (49%), Gaps = 44/220 (20%)
Query: 224 ENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQM 283
+NL+ V++G+ F +GP+G+GK+ + ++ + P SG+ILLDG D+ L + + +
Sbjct: 17 DNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPE--KHDI 74
Query: 284 GLVSQEPALFA-TSIANNI-----LLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQV 337
V Q +LF ++ N+ + +D RV++ A+ ++ P
Sbjct: 75 AFVYQNYSLFPHMNVKKNLEFGMRMKKIKDP--KRVLDTARDLKIEHLLDRNPL------ 126
Query: 338 GEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDA------ESELI-VQRALEKIM 390
LSGG++QR+A+ARA++ NPKILLLDE SALD L + +
Sbjct: 127 -----TLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKN---- 177
Query: 391 SNRTTIVVAH------RLSTVRDVDTIMVLKNGQVVESGT 424
T + + H ++ D I V+ +G++++ G
Sbjct: 178 -KLTVLHITHDQTEARIMA-----DRIAVVMDGKLIQVGK 211
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron transport, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} Length = 359 | Back alignment and structure |
|---|
Score = 133 bits (337), Expect = 6e-34
Identities = 66/243 (27%), Positives = 115/243 (47%), Gaps = 40/243 (16%)
Query: 835 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTV 894
+ + ++S + + + +++L + G L ++G SG GK+T++ + F P SG +
Sbjct: 5 LHIGHLSKSFQ---NTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEI 61
Query: 895 LIDGYDI--RTLNLRSLRRKIGLVQQEPALF-STTIYENIKYG----NEDASEIELMKAT 947
+ G I + NL R++G + QE LF T+Y NI YG ++
Sbjct: 62 SLSGKTIFSKNTNLPVRERRLGYLVQEGVLFPHLTVYRNIAYGLGNGKGRTAQE----RQ 117
Query: 948 KAANA------HGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEAT 1001
+ R P +LSGGQ+QR A+ARA+ +P ++LLDE
Sbjct: 118 RIEAMLELTGISELAGRYPH-----------ELSGGQQQRAALARALAPDPELILLDEPF 166
Query: 1002 SALDTA-SENLIQEALDKLME-GRTTIMVAH----RLSTIRNADKIAVLQQGKVAEIGSH 1055
SALD + ++ + L G++ + V+H L AD+IAV++QG++ + S
Sbjct: 167 SALDEQLRRQIREDMIAALRANGKSAVFVSHDREEALQY---ADRIAVMKQGRILQTASP 223
Query: 1056 EQL 1058
+L
Sbjct: 224 HEL 226
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron transport, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} Length = 359 | Back alignment and structure |
|---|
Score = 123 bits (311), Expect = 1e-30
Identities = 59/238 (24%), Positives = 109/238 (45%), Gaps = 39/238 (16%)
Query: 206 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKIL 265
+ + ++ + P V +++ S+D G+ +G SG GK+T++ + +P SG+I
Sbjct: 5 LHIGHLSKSFQNTP--VLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEIS 62
Query: 266 LDGHDLKSLQLKWL---REQMGLVSQEPALFA-TSIANNILLGKEDASMDRVIEAAKAAN 321
L G + + L ++G + QE LF ++ NI G + E +
Sbjct: 63 LSGKTI-FSKNTNLPVRERRLGYLVQEGVLFPHLTVYRNIAYGLGNGKGRTAQERQRIEA 121
Query: 322 AHSFV--EGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAE-- 377
L Y + LSGGQ+QR A+ARA+ +P+++LLDE SALD +
Sbjct: 122 MLELTGISELAGRYPHE-------LSGGQQQRAALARALAPDPELILLDEPFSALDEQLR 174
Query: 378 ----SELI-VQRALEKIMSNRTTIVVAH------RLSTVRDVDTIMVLKNGQVVESGT 424
++I RA ++ + V+H + + D I V+K G+++++ +
Sbjct: 175 RQIREDMIAALRAN-----GKSAVFVSHDREEALQYA-----DRIAVMKQGRILQTAS 222
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 Length = 214 | Back alignment and structure |
|---|
Score = 128 bits (325), Expect = 6e-34
Identities = 42/218 (19%), Positives = 96/218 (44%), Gaps = 23/218 (10%)
Query: 835 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTV 894
+E+R++S Y D + E + + + G + G +G GK+T++ + + P+ G +
Sbjct: 11 LEIRDLSVGY----DKPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEI 66
Query: 895 LIDGYDIRTLNLRSLRRKIGLVQQEPALFST-TIYENIKYGNEDASEIELMKATKAANAH 953
+ +G I + + KI + +E + ++ + +K + + +K K
Sbjct: 67 IYNGVPITKV-----KGKIFFLPEEIIVPRKISVEDYLKA----VASLYGVKVNKNE--- 114
Query: 954 GFISRMPEGYQ-SHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLI 1012
I E + + + +LS G +RV +A +L N I +LD+ A+D S++ +
Sbjct: 115 --IMDALESVEVLDLKKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKV 172
Query: 1013 QEALDKLM-EGRTTIMVAHRLSTIRNADKIAVLQQGKV 1049
+++ +++ E I+ + + D L +
Sbjct: 173 LKSILEILKEKGIVIISSREELSY--CDVNENLHKYST 208
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 Length = 214 | Back alignment and structure |
|---|
Score = 127 bits (322), Expect = 2e-33
Identities = 38/206 (18%), Positives = 90/206 (43%), Gaps = 25/206 (12%)
Query: 224 ENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQM 283
E + +++ G F GP+G GK+T++ + +P G+I+ +G + ++ ++
Sbjct: 26 ERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITK-----VKGKI 80
Query: 284 GLVSQEPALFATSIANNIL-----LGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVG 338
+ +E + + L L + + +++A ++ + D + ++G
Sbjct: 81 FFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESV-------EVLD-LKKKLG 132
Query: 339 EGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNR-TTIV 397
E LS G +R+ +A +L N +I +LD+ A+D +S+ V +++ +I+ + I+
Sbjct: 133 E----LSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVII 188
Query: 398 VAHRLSTVRDVDTIMVLKNGQVVESG 423
+ + D L
Sbjct: 189 SSREELSY--CDVNENLHKYSTKIDK 212
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 Length = 256 | Back alignment and structure |
|---|
Score = 129 bits (326), Expect = 1e-33
Identities = 54/220 (24%), Positives = 109/220 (49%), Gaps = 21/220 (9%)
Query: 224 ENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQM 283
+ ++F ++ G+ F +GP+G+GK+T + ++ L +P+SG + + G ++ + +R+ +
Sbjct: 32 KGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVE-EPHEVRKLI 90
Query: 284 GLVSQEPALFA--TSIANNILLGK-----EDASMDRVIEAAKAANAHSFVEGLPDGYQTQ 336
+ +E + I + + V A + A GL + + +
Sbjct: 91 SYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIA-------GLGEKIKDR 143
Query: 337 VGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTI 396
V S G +++ IARA++ NP++ +LDE TS LD + V++ L++ TI
Sbjct: 144 VST----YSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTI 199
Query: 397 VV-AHRLSTVRDV-DTIMVLKNGQVVESGTHVDLISKGGE 434
+V +H + V + D I ++ NG +VE+GT +L +
Sbjct: 200 LVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKERYKA 239
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 Length = 256 | Back alignment and structure |
|---|
Score = 128 bits (324), Expect = 2e-33
Identities = 47/238 (19%), Positives = 107/238 (44%), Gaps = 22/238 (9%)
Query: 835 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTV 894
+ ++++ + I + ++ ++ G ++G +G+GK+T + ++ P SG V
Sbjct: 16 VVVKDLRKRIG---KKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIV 72
Query: 895 LIDGYDIRTLNLRSLRRKIGLVQQEPALFST-TIYENIKYGNEDASEIELMKATKAANAH 953
+ G ++ +R+ I + +E + E +++ + +++
Sbjct: 73 TVFGKNVVE-EPHEVRKLISYLPEEAGAYRNMQGIEYLRF----VAGFYASSSSEIEE-- 125
Query: 954 GFISRMPE-----GYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTAS 1008
+ G + DR S G +++ IARA++ NP + +LDE TS LD +
Sbjct: 126 ----MVERATEIAGLGEKIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLN 181
Query: 1009 ENLIQEALDKL-MEGRTTIMVAHRLSTI-RNADKIAVLQQGKVAEIGSHEQLLRKENG 1064
+++ L + EG T ++ +H + + D+IA++ G + E G+ E+L +
Sbjct: 182 AREVRKILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKERYKA 239
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C Length = 249 | Back alignment and structure |
|---|
Score = 129 bits (326), Expect = 1e-33
Identities = 61/248 (24%), Positives = 108/248 (43%), Gaps = 46/248 (18%)
Query: 835 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTV 894
++L++V+ T L+ +V AG L +VG +G+GKST+++ + G++
Sbjct: 5 MQLQDVAES-------TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGKGSI 56
Query: 895 LIDGYDIRTLNLRSLRRKIGLV-QQEPALFSTTIYENIKYG---NEDASEI-ELMKATKA 949
G + + L + QQ+ F+T ++ + + ++ A
Sbjct: 57 QFAGQPLEAWSATKLALHRAYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALAL 116
Query: 950 ANAHGFISRMPEGYQSHVGDRGV-QLSGGQKQRVAIARAIL-------KNPSILLLDEAT 1001
R QLSGG+ QRV +A +L +LLLDE
Sbjct: 117 D---------------DKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPM 161
Query: 1002 SALDTASENLIQEALDKLM-----EGRTTIMVAHRLS-TIRNADKIAVLQQGKVAEIGSH 1055
++LD A Q ALDK++ +G +M +H L+ T+R+A + +L+ GK+ G
Sbjct: 162 NSLDVAQ----QSALDKILSALSQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRR 217
Query: 1056 EQLLRKEN 1063
E++L N
Sbjct: 218 EEVLTPPN 225
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C Length = 249 | Back alignment and structure |
|---|
Score = 115 bits (291), Expect = 7e-29
Identities = 53/214 (24%), Positives = 95/214 (44%), Gaps = 23/214 (10%)
Query: 222 VFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLRE 281
L+ V AG+ VGP+G+GKST+++ + + G I G L++ L
Sbjct: 15 RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGM-TSGKGSIQFAGQPLEAWSATKLAL 73
Query: 282 QMGLVSQEPAL-FATSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPD-GYQTQVGE 339
+SQ+ FAT + + + L + D + ++ A A ++
Sbjct: 74 HRAYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALA---LDDKLGRST------ 124
Query: 340 GGTQLSGGQKQRIAIARAVL-------RNPKILLLDEATSALDAESELIVQRALEKI-MS 391
QLSGG+ QR+ +A VL ++LLLDE ++LD + + + L +
Sbjct: 125 --NQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALSQQ 182
Query: 392 NRTTIVVAHRLS-TVRDVDTIMVLKNGQVVESGT 424
++ +H L+ T+R +LK G+++ SG
Sbjct: 183 GLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGR 216
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 134 bits (339), Expect = 5e-33
Identities = 46/206 (22%), Positives = 80/206 (38%), Gaps = 23/206 (11%)
Query: 222 VFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLRE 281
N G+ +GP+G GK+T ++ G + + L +
Sbjct: 283 QLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEKQILSYKPQRIFPN 342
Query: 282 QMGLVSQEPALFATSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGG 341
G V Q + + + S E K N H +E
Sbjct: 343 YDGTVQQ---YLENASKDAL-----STSSWFFEEVTKRLNLHRLLESNV----------- 383
Query: 342 TQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNR--TTIVVA 399
LSGG+ Q++ IA + + + +LD+ +S LD E IV +A++++ R T ++
Sbjct: 384 NDLSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIID 443
Query: 400 HRLSTVRDV-DTIMVLKNGQVVESGT 424
H LS + D I+V K G+ ++G
Sbjct: 444 HDLSIHDYIADRIIVFK-GEPEKAGL 468
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 126 bits (318), Expect = 2e-30
Identities = 47/256 (18%), Positives = 101/256 (39%), Gaps = 22/256 (8%)
Query: 838 RNVSFKYPVRPDITIFENLNLKV-SAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLI 896
V +Y + F+ L L V+G++G GK+TV+ ++ P G
Sbjct: 3 GEVIHRY----KVNGFKLFGLPTPKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGD--P 56
Query: 897 DGYDIRTLNLRSLR-RKIGLVQQEPALFSTTIYENIKYGNED-------ASEIELMKATK 948
+ + L+ R ++I +E +S + K + + E++
Sbjct: 57 NSKVGKDEVLKRFRGKEIYNYFKEL--YSNELKIVHKIQYVEYASKFLKGTVNEILTKID 114
Query: 949 AANAHGFISRMPEGYQSHVGDRGV-QLSGGQKQRVAIARAILKNPSILLLDEATSALDTA 1007
+ + +++ ++ LSGG QR+ +A ++L+ + + D+ +S LD
Sbjct: 115 ERGKKDEVKELLN--MTNLWNKDANILSGGGLQRLLVAASLLREADVYIFDQPSSYLDVR 172
Query: 1008 SENLIQEALDKLMEGRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGSHEQLLRKENGIY 1066
+ +A+ +L++ + I+V H L + D I ++ G+ + G + GI
Sbjct: 173 ERMNMAKAIRELLKNKYVIVVDHDLIVLDYLTDLIHII-YGESSVYGRVSKSYAARVGIN 231
Query: 1067 KQLIRLQQDKNPEAME 1082
L +N +
Sbjct: 232 NFLKGYLPAENMKIRP 247
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 125 bits (315), Expect = 5e-30
Identities = 46/253 (18%), Positives = 93/253 (36%), Gaps = 27/253 (10%)
Query: 816 TAIQPDDPASKEVTEIKGNIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSG 875
+ + ++K ++ + K N + G + ++G +G G
Sbjct: 251 KFMLKEVSDLDLSKDLKTKMKWTKIIKKLGDF----QLVVDNGEAKEGEIIGILGPNGIG 306
Query: 876 KSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRKIGLVQQEPALFSTTIYENIKYGN 935
K+T +++ G+V + + R G VQQ + + +
Sbjct: 307 KTTFARILVGEITADEGSVTPEKQILSYKPQRIFPNYDGTVQQ---YLENASKDALSTSS 363
Query: 936 EDASEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSIL 995
E+ TK N H + LSGG+ Q++ IA + K +
Sbjct: 364 WFFEEV-----TKRLNLHRLLESNVN-----------DLSGGELQKLYIAATLAKEADLY 407
Query: 996 LLDEATSALDTASENLIQEALDKLME--GRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEI 1052
+LD+ +S LD ++ +A+ ++ T ++ H LS AD+I V +G+ +
Sbjct: 408 VLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDLSIHDYIADRIIVF-KGEPEKA 466
Query: 1053 GSHEQLLRKENGI 1065
G + + G+
Sbjct: 467 GLATSPVTLKTGM 479
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 123 bits (311), Expect = 1e-29
Identities = 42/216 (19%), Positives = 83/216 (38%), Gaps = 23/216 (10%)
Query: 223 FENLNFSV-DAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLR- 280
F+ +G +G GK+T++ ++ P G + K LK R
Sbjct: 14 FKLFGLPTPKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDP--NSKVGKDEVLKRFRG 71
Query: 281 EQMGLVSQEPA---------LFATSIANNILLGKEDASMDRVIEAAKAANAHSFV--EGL 329
+++ +E + A+ L G + + ++ E K + L
Sbjct: 72 KEIYNYFKELYSNELKIVHKIQYVEYASKFLKGTVNEILTKIDERGKKDEVKELLNMTNL 131
Query: 330 PDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKI 389
+ LSGG QR+ +A ++LR + + D+ +S LD + + +A+ ++
Sbjct: 132 WNKD---AN----ILSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIREL 184
Query: 390 MSNRTTIVVAHRLSTVRDV-DTIMVLKNGQVVESGT 424
+ N+ IVV H L + + D I ++ V
Sbjct: 185 LKNKYVIVVDHDLIVLDYLTDLIHIIYGESSVYGRV 220
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 133 bits (336), Expect = 2e-32
Identities = 60/218 (27%), Positives = 91/218 (41%), Gaps = 25/218 (11%)
Query: 210 EVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGH 269
E E + G+ VGP+G GK+T + M+ + EPT GK+ D
Sbjct: 359 EYPRLVKDYGSFKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDLT 418
Query: 270 DLKSLQLKWLREQMGLVSQEPALFATSIANNILLGKEDASMDRVIEAAKAANAHSFVEGL 329
Q + V + L + + S E K G+
Sbjct: 419 VAYKPQYIKAEYEG-TVYE---LLSKID------SSKLNSNFYKTELLKPL-------GI 461
Query: 330 PDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKI 389
D Y V + LSGG+ QR+AIA +LR+ I LLDE ++ LD E L V RA+ +
Sbjct: 462 IDLYDRNVED----LSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHL 517
Query: 390 M--SNRTTIVVAHRLSTVRDV-DTIMVLKNGQVVESGT 424
M + +T +VV H + + V D ++V + G+ G
Sbjct: 518 MEKNEKTALVVEHDVLMIDYVSDRLIVFE-GEPGRHGR 554
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 131 bits (332), Expect = 7e-32
Identities = 51/232 (21%), Positives = 83/232 (35%), Gaps = 37/232 (15%)
Query: 210 EVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEP------TSGK 263
+ Y + V G VGP+G+GK+T + ++ P S
Sbjct: 96 DCVHRY--GVNAFVLYRLPIVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWD 153
Query: 264 ILLDGHDLKSLQLKWL-----------REQMGLVSQEPALFATSIANNILLGKEDASMDR 312
++ LQ + + Q V P + LL K D + +
Sbjct: 154 NVIRAFRGNELQNYFERLKNGEIRPVVKPQY--VDLLPKAVKGKV--RELLKKVDE-VGK 208
Query: 313 VIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATS 372
E K + ++ QLSGG+ QR+AIA A+LR DE +S
Sbjct: 209 FEEVVKELELENVLDRELH-----------QLSGGELQRVAIAAALLRKAHFYFFDEPSS 257
Query: 373 ALDAESELIVQRALEKIMSNRTTIVVA-HRLSTVRDV-DTIMVLKNGQVVES 422
LD L V R + ++ + ++V H L+ + + D I V+ V
Sbjct: 258 YLDIRQRLKVARVIRRLANEGKAVLVVEHDLAVLDYLSDVIHVVYGEPGVYG 309
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 125 bits (316), Expect = 8e-30
Identities = 55/244 (22%), Positives = 96/244 (39%), Gaps = 25/244 (10%)
Query: 838 RNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMR-----FYD-PIS 891
+ +Y V V G + +VG +G+GK+T + ++ + S
Sbjct: 95 EDCVHRYGVN---AFVLYRLPIVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDS 151
Query: 892 GTVLIDGYDIRTLN--LRSLR-RKIGLVQQEPALFSTTIYENIKYGNEDASEIELMKATK 948
+I + L L+ +I V + + + + +K EL+K
Sbjct: 152 WDNVIRAFRGNELQNYFERLKNGEIRPVVKPQ--YVDLLPKAVK-----GKVRELLKKVD 204
Query: 949 AANAHGFISRMPEGYQSHVGDRGV-QLSGGQKQRVAIARAILKNPSILLLDEATSALDTA 1007
+ + E +V DR + QLSGG+ QRVAIA A+L+ DE +S LD
Sbjct: 205 EVGKFEEVVKELEL--ENVLDRELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIR 262
Query: 1008 SENLIQEALDKLM-EGRTTIMVAHRLSTIRN-ADKIAVLQQGKVAE-IGSHEQLLRKENG 1064
+ + +L EG+ ++V H L+ + +D I V+ I S + R
Sbjct: 263 QRLKVARVIRRLANEGKAVLVVEHDLAVLDYLSDVIHVVYGEPGVYGIFSKPKGTRNGIN 322
Query: 1065 IYKQ 1068
+ Q
Sbjct: 323 EFLQ 326
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 123 bits (312), Expect = 2e-29
Identities = 61/276 (22%), Positives = 110/276 (39%), Gaps = 43/276 (15%)
Query: 814 RKTAIQPDDPASKEVTEIKGNIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSG 873
R I+ + + E + +E + Y E ++ G + +VG +G
Sbjct: 337 RPYEIRFTKLSERVDVERETLVEYPRLVKDYGSF----KLEVEPGEIRKGEVIGIVGPNG 392
Query: 874 SGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRKIGLVQQEPAL-FSTTIYENIK 932
GK+T + ++ +P G V D + Q + T+YE +
Sbjct: 393 IGKTTFVKMLAGVEEPTEGKVEWDL-------------TVAYKPQYIKAEYEGTVYELL- 438
Query: 933 YGNEDASEIELMKATKAANAHGFISRM--PEGYQSHVGDRGVQLSGGQKQRVAIARAILK 990
S+I+ K + + + Y +V LSGG+ QRVAIA +L+
Sbjct: 439 ------SKIDSSKLNSNFYKTELLKPLGIIDLYDRNVE----DLSGGELQRVAIAATLLR 488
Query: 991 NPSILLLDEATSALDTASENLIQ--EALDKLME--GRTTIMVAHRLSTIRN-ADKIAVLQ 1045
+ I LLDE ++ LD E + A+ LME +T ++V H + I +D++ V
Sbjct: 489 DADIYLLDEPSAYLD--VEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLIVF- 545
Query: 1046 QGKVAEIGSHEQLLRKENGIYKQL----IRLQQDKN 1077
+G+ G + G+ + L I ++D +
Sbjct: 546 EGEPGRHGRALPPMGMREGMNRFLASVGITFRRDPD 581
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 130 bits (329), Expect = 8e-32
Identities = 63/206 (30%), Positives = 94/206 (45%), Gaps = 25/206 (12%)
Query: 222 VFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLRE 281
E + G+ VGP+G GK+T + M+ + EPT GKI D Q
Sbjct: 301 RLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEWDLTVAYKPQYIKADY 360
Query: 282 QMGLVSQEPALFATSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGG 341
+ V + L + A+ + S E K G+ D Y +V E
Sbjct: 361 EG-TVYE---LLSKIDAS------KLNSNFYKTELLKPL-------GIIDLYDREVNE-- 401
Query: 342 TQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIM--SNRTTIVVA 399
LSGG+ QR+AIA +LR+ I LLDE ++ LD E L V RA+ +M + +T +VV
Sbjct: 402 --LSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVE 459
Query: 400 HRLSTVRDV-DTIMVLKNGQVVESGT 424
H + + V D +MV + G+ + G
Sbjct: 460 HDVLMIDYVSDRLMVFE-GEPGKYGR 484
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 124 bits (314), Expect = 6e-30
Identities = 59/276 (21%), Positives = 109/276 (39%), Gaps = 41/276 (14%)
Query: 814 RKTAIQPDDPASKEVTEIKGNIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSG 873
R I+ + E + + + Y E ++ G + +VG +G
Sbjct: 267 RPYEIKFTKTGERVEIERETLVTYPRLVKDYGSF----RLEVEPGEIKKGEVIGIVGPNG 322
Query: 874 SGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRKIGLVQQEP--ALFSTTIYENI 931
GK+T + ++ +P G + D + + I + L S +
Sbjct: 323 IGKTTFVKMLAGVEEPTEGKIEWDL------TVAYKPQYIKADYEGTVYELLSKIDASKL 376
Query: 932 KYGNEDASEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKN 991
N + + EL+K + + Y V +LSGG+ QRVAIA +L++
Sbjct: 377 ---NSNFYKTELLKPLG----------IIDLYDREVN----ELSGGELQRVAIAATLLRD 419
Query: 992 PSILLLDEATSALDTASENLIQ--EALDKLME--GRTTIMVAHRLSTIRN-ADKIAVLQQ 1046
I LLDE ++ LD E + A+ LME +T ++V H + I +D++ V +
Sbjct: 420 ADIYLLDEPSAYLD--VEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLMVF-E 476
Query: 1047 GKVAEIGSHEQLLRKENGIYKQL----IRLQQDKNP 1078
G+ + G + G+ + L I ++D +
Sbjct: 477 GEPGKYGRALPPMGMREGMNRFLASIGITFRRDPDT 512
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 124 bits (313), Expect = 9e-30
Identities = 56/243 (23%), Positives = 97/243 (39%), Gaps = 25/243 (10%)
Query: 839 NVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVM-----RFYD-PISG 892
+ +Y V + V G + +VG +G+GKST + ++ S
Sbjct: 26 DCVHRYGVNAFV---LYRLPVVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSW 82
Query: 893 TVLIDGYDIRTLN--LRSLR-RKIGLVQQEPALFSTTIYENIKYGNEDASEIELMKATKA 949
+I + L L+ +I V + + I + +K IEL+K
Sbjct: 83 DGVIRAFRGNELQNYFEKLKNGEIRPVVKPQ--YVDLIPKAVK-----GKVIELLKKADE 135
Query: 950 ANAHGFISRMPEGYQSHVGDRGV-QLSGGQKQRVAIARAILKNPSILLLDEATSALDTAS 1008
+ + E +V +R + LSGG+ QRVAIA A+L+N + DE +S LD
Sbjct: 136 TGKLEEVVKALEL--ENVLEREIQHLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQ 193
Query: 1009 ENLIQEALDKLMEGRTTIMVA-HRLSTIRN-ADKIAVLQQGKVAE-IGSHEQLLRKENGI 1065
A+ +L E +++V H L+ + +D I V+ I S + R
Sbjct: 194 RLNAARAIRRLSEEGKSVLVVEHDLAVLDYLSDIIHVVYGEPGVYGIFSQPKGTRNGINE 253
Query: 1066 YKQ 1068
+ +
Sbjct: 254 FLR 256
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 117 bits (294), Expect = 2e-27
Identities = 53/217 (24%), Positives = 81/217 (37%), Gaps = 35/217 (16%)
Query: 225 NLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEP------TSGKILLDGHDLKSLQLKW 278
V G VGP+G+GKST + ++ P S ++ LQ +
Sbjct: 39 YRLPVVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNYF 98
Query: 279 L-----------REQMGLVSQEPALFATSIANNILLGKEDASMDRVIEAAKAANAHSFVE 327
+ Q V P + LL K D ++ E KA + +E
Sbjct: 99 EKLKNGEIRPVVKPQY--VDLIPKAVKGKV--IELLKKADE-TGKLEEVVKALELENVLE 153
Query: 328 GLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALE 387
LSGG+ QR+AIA A+LRN DE +S LD L RA+
Sbjct: 154 REIQ-----------HLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIR 202
Query: 388 KIMSNRTTIVVA-HRLSTVRDV-DTIMVLKNGQVVES 422
++ +++V H L+ + + D I V+ V
Sbjct: 203 RLSEEGKSVLVVEHDLAVLDYLSDIIHVVYGEPGVYG 239
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* Length = 353 | Back alignment and structure |
|---|
Score = 125 bits (315), Expect = 4e-31
Identities = 69/240 (28%), Positives = 120/240 (50%), Gaps = 37/240 (15%)
Query: 834 NIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGT 893
I ++NVS + + + +N+N+ + G ++G SG+GK+T + ++ P +G
Sbjct: 3 RIIVKNVSKVFK-KGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGE 61
Query: 894 VLIDGYDIRTLNLRSL---RRKIGLVQQEPALFST-TIYENIKYG----NEDASEIE--L 943
+ D + + + RKIG+V Q AL+ T +ENI + EI +
Sbjct: 62 LYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRV 121
Query: 944 MKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSA 1003
+ K + H ++ P +LSG Q+QRVA+ARA++K+PS+LLLDE S
Sbjct: 122 EEVAKILDIHHVLNHFPR-----------ELSGAQQQRVALARALVKDPSLLLLDEPFSN 170
Query: 1004 LD------TASENLIQEALDKLMEGRTTIMVAHRLS---TIRNADKIAVLQQGKVAEIGS 1054
LD + ++E +L G T ++V+H + I AD++ VL +GK+ ++G
Sbjct: 171 LDARMRDSARAL--VKEVQSRL--GVTLLVVSHDPADIFAI--ADRVGVLVKGKLVQVGK 224
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* Length = 353 | Back alignment and structure |
|---|
Score = 121 bits (305), Expect = 8e-30
Identities = 72/246 (29%), Positives = 119/246 (48%), Gaps = 42/246 (17%)
Query: 205 QIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKI 264
+I V + + +N+N +++ G+ F +GPSG+GK+T + ++ L P++G++
Sbjct: 3 RIIVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGEL 62
Query: 265 LLDGHDLKSLQLKWL----REQMGLVSQEPALFAT-SIANNILLGKEDASMD------RV 313
D + S + R+ +G+V Q AL+ + NI + M RV
Sbjct: 63 YFDDRLVASNGKLIVPPEDRK-IGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRV 121
Query: 314 IEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSA 373
E AK + H + P +LSG Q+QR+A+ARA++++P +LLLDE S
Sbjct: 122 EEVAKILDIHHVLNHFPR-----------ELSGAQQQRVALARALVKDPSLLLLDEPFSN 170
Query: 374 LDAESELIVQ-RALEKIMSNR---TTIVVAHRLSTVRD-------VDTIMVLKNGQVVES 422
LDA + RAL K + +R T +VV+H D D + VL G++V+
Sbjct: 171 LDA--RMRDSARALVKEVQSRLGVTLLVVSH------DPADIFAIADRVGVLVKGKLVQV 222
Query: 423 GTHVDL 428
G DL
Sbjct: 223 GKPEDL 228
|
| >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} Length = 362 | Back alignment and structure |
|---|
Score = 109 bits (275), Expect = 7e-26
Identities = 81/241 (33%), Positives = 123/241 (51%), Gaps = 46/241 (19%)
Query: 834 NIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGT 893
I+L N+ K+ + T N+NLK+ G +A++G SGSGKST++ + Y P SG
Sbjct: 3 EIKLENIVKKFG---NFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGK 59
Query: 894 VLIDGYDIRTLNLRSLRRKIGLVQQEPALFST-TIYENIKYG----NEDASEIELMKATK 948
+ D D+ L R +GLV Q AL+ T+Y+NI + EI+ K +
Sbjct: 60 IYFDEKDVT--ELPPKDRNVGLVFQNWALYPHMTVYKNIAFPLELRKAPREEID-KKVRE 116
Query: 949 AANAHG---FISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALD 1005
A ++R P QLSGGQ+QRVAIARA++K P +LLLDE S LD
Sbjct: 117 VAKMLHIDKLLNRYPW-----------QLSGGQQQRVAIARALVKEPEVLLLDEPLSNLD 165
Query: 1006 ------TASENLIQEALDKLMEGRTTIMVAH------RLSTIRNADKIAVLQQGKVAEIG 1053
+E ++ +L G TT+ V H + AD+IAV+++G++ ++G
Sbjct: 166 ALLRLEVRAE--LKRLQKEL--GITTVYVTHDQAEALAM-----ADRIAVIREGEILQVG 216
Query: 1054 S 1054
+
Sbjct: 217 T 217
|
| >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} Length = 362 | Back alignment and structure |
|---|
Score = 104 bits (263), Expect = 3e-24
Identities = 78/242 (32%), Positives = 119/242 (49%), Gaps = 41/242 (16%)
Query: 205 QIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKI 264
+I+ + + + N+N + G+ A +GPSGSGKST++ + +Y+PTSGKI
Sbjct: 3 EIKLENIVKKFGN--FTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKI 60
Query: 265 LLDGHDLKSLQLKWLREQMGLVSQEPALFAT-SIANNILLGKEDASMD------RVIEAA 317
D D+ L K R +GLV Q AL+ ++ NI E +V E A
Sbjct: 61 YFDEKDVTELPPK-DRN-VGLVFQNWALYPHMTVYKNIAFPLELRKAPREEIDKKVREVA 118
Query: 318 KAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAE 377
K + + P QLSGGQ+QR+AIARA+++ P++LLLDE S LDA
Sbjct: 119 KMLHIDKLLNRYPW-----------QLSGGQQQRVAIARALVKEPEVLLLDEPLSNLDA- 166
Query: 378 SELIVQ-RALEKIMSNR---TTIVVAHRLSTVRD-------VDTIMVLKNGQVVESGTHV 426
L ++ RA K + TT+ V H D D I V++ G++++ GT
Sbjct: 167 -LLRLEVRAELKRLQKELGITTVYVTH------DQAEALAMADRIAVIREGEILQVGTPD 219
Query: 427 DL 428
++
Sbjct: 220 EV 221
|
| >2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} Length = 359 | Back alignment and structure |
|---|
Score = 101 bits (254), Expect = 4e-23
Identities = 70/241 (29%), Positives = 115/241 (47%), Gaps = 46/241 (19%)
Query: 834 NIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGT 893
+I + N+ KY + + ++ +V G +A++G SG GK+T + ++ Y P SG
Sbjct: 3 SIRVVNLK-KYF--GKVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGE 59
Query: 894 VLIDGYDIRTLNLRSLRRKIGLVQQEPALFST-TIYENIKYG----NEDASEIELMKATK 948
+ D + ++ R++G+V Q AL+ T++ENI + E+E + +
Sbjct: 60 IYFDDVLVN--DIPPKYREVGMVFQNYALYPHMTVFENIAFPLRARRISKDEVE-KRVVE 116
Query: 949 AANAHG---FISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALD 1005
A + R P QLSGGQ+QRVA+ARA++K P +LL DE S LD
Sbjct: 117 IARKLLIDNLLDRKPT-----------QLSGGQQQRVALARALVKQPKVLLFDEPLSNLD 165
Query: 1006 TA------SENLIQEALDKLMEGRTTIMVAH------RLSTIRNADKIAVLQQGKVAEIG 1053
+E I+ +L G T++ V H + A +IAV QGK+ + G
Sbjct: 166 ANLRMIMRAE--IKHLQQEL--GITSVYVTHDQAEAMTM-----ASRIAVFNQGKLVQYG 216
Query: 1054 S 1054
+
Sbjct: 217 T 217
|
| >2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} Length = 359 | Back alignment and structure |
|---|
Score = 96.5 bits (241), Expect = 2e-21
Identities = 71/225 (31%), Positives = 111/225 (49%), Gaps = 39/225 (17%)
Query: 222 VFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLRE 281
+ ++F V G+ A +GPSG GK+T + M+ +Y+PTSG+I D + + K RE
Sbjct: 18 AVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPK-YRE 76
Query: 282 QMGLVSQEPALFAT-SIANNILLGKEDASMD------RVIEAAKAANAHSFVEGLPDGYQ 334
+G+V Q AL+ ++ NI + RV+E A+ + ++ P
Sbjct: 77 -VGMVFQNYALYPHMTVFENIAFPLRARRISKDEVEKRVVEIARKLLIDNLLDRKP---- 131
Query: 335 TQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQ-RALEKIMSNR 393
TQLSGGQ+QR+A+ARA+++ PK+LL DE S LDA L + RA K +
Sbjct: 132 -------TQLSGGQQQRVALARALVKQPKVLLFDEPLSNLDA--NLRMIMRAEIKHLQQE 182
Query: 394 ---TTIVVAHRLSTVRD-------VDTIMVLKNGQVVESGTHVDL 428
T++ V H D I V G++V+ GT ++
Sbjct: 183 LGITSVYVTH------DQAEAMTMASRIAVFNQGKLVQYGTPDEV 221
|
| >1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* Length = 372 | Back alignment and structure |
|---|
Score = 101 bits (253), Expect = 6e-23
Identities = 73/241 (30%), Positives = 114/241 (47%), Gaps = 46/241 (19%)
Query: 834 NIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGT 893
++L N++ ++ + T LNL + G L ++G SG GK+T + ++ +P G
Sbjct: 11 EVKLENLTKRFG---NFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGR 67
Query: 894 VLIDGYDIRTLNLRSLRRKIGLVQQEPALFST-TIYENIKYG----NEDASEIELMKATK 948
+ D+ L R I +V Q A++ T+YENI + EI+ +
Sbjct: 68 IYFGDRDVT--YLPPKDRNISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEID-KRVRW 124
Query: 949 AANAHG---FISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALD 1005
AA ++R P QLSGGQ+QRVA+ARAI+ P +LL+DE S LD
Sbjct: 125 AAELLQIEELLNRYPA-----------QLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLD 173
Query: 1006 ------TASENLIQEALDKLMEGRTTIMVAH------RLSTIRNADKIAVLQQGKVAEIG 1053
+E I++ KL TTI V H + D+IAV+ +G++ +IG
Sbjct: 174 AKLRVAMRAE--IKKLQQKL--KVTTIYVTHDQVEAMTM-----GDRIAVMNRGQLLQIG 224
Query: 1054 S 1054
S
Sbjct: 225 S 225
|
| >1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* Length = 372 | Back alignment and structure |
|---|
Score = 96.5 bits (241), Expect = 2e-21
Identities = 71/252 (28%), Positives = 115/252 (45%), Gaps = 42/252 (16%)
Query: 195 DGITLPKLAGQIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQ 254
+ I + K+ +++ + + + LN ++ G+ +GPSG GK+T + M+
Sbjct: 2 NNIEVIKMV-EVKLENLTKRFGNFT--AVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIA 58
Query: 255 RLYEPTSGKILLDGHDLKSLQLKWLREQMGLVSQEPALFAT-SIANNILLGKEDASMD-- 311
L EPT G+I D+ L K R + +V Q A++ ++ NI +
Sbjct: 59 GLEEPTEGRIYFGDRDVTYLPPK-DRN-ISMVFQSYAVWPHMTVYENIAFPLKIKKFPKD 116
Query: 312 ----RVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLL 367
RV AA+ + P QLSGGQ+QR+A+ARA++ P +LL+
Sbjct: 117 EIDKRVRWAAELLQIEELLNRYPA-----------QLSGGQRQRVAVARAIVVEPDVLLM 165
Query: 368 DEATSALDAESELIVQ-RALEKIMSNR---TTIVVAHRLSTVRD-------VDTIMVLKN 416
DE S LDA +L V RA K + + TTI V H D D I V+
Sbjct: 166 DEPLSNLDA--KLRVAMRAEIKKLQQKLKVTTIYVTH------DQVEAMTMGDRIAVMNR 217
Query: 417 GQVVESGTHVDL 428
GQ+++ G+ ++
Sbjct: 218 GQLLQIGSPTEV 229
|
| >1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A Length = 372 | Back alignment and structure |
|---|
Score = 98.5 bits (246), Expect = 4e-22
Identities = 65/248 (26%), Positives = 113/248 (45%), Gaps = 54/248 (21%)
Query: 834 NIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGT 893
+ L +V + ++T ++L+V G + ++G SG GK+T + ++ +P G
Sbjct: 3 GVRLVDVWKVFG---EVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQ 59
Query: 894 VLIDGYDIRTLNLRSLR-------RKIGLVQQEPALFST-TIYENIKYG----NEDASEI 941
+ I + + R I +V Q AL+ T+Y+NI + EI
Sbjct: 60 IYIGD---KLVADPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEI 116
Query: 942 ELMKATKAANAHG---FISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLD 998
+ + + A G ++R P +LSGGQ+QRVA+ RAI++ P + L+D
Sbjct: 117 D-QRVREVAELLGLTELLNRKPR-----------ELSGGQRQRVALGRAIVRKPQVFLMD 164
Query: 999 EATSALD------TASENLIQEALDKLMEGRTTIMVAH------RLSTIRNADKIAVLQQ 1046
E S LD +E +++ +L G TTI V H + D+IAV+ +
Sbjct: 165 EPLSNLDAKLRVRMRAE--LKKLQRQL--GVTTIYVTHDQVEAMTM-----GDRIAVMNR 215
Query: 1047 GKVAEIGS 1054
G + ++GS
Sbjct: 216 GVLQQVGS 223
|
| >1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A Length = 372 | Back alignment and structure |
|---|
Score = 93.8 bits (234), Expect = 2e-20
Identities = 63/248 (25%), Positives = 105/248 (42%), Gaps = 47/248 (18%)
Query: 205 QIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKI 264
+ +V + ++ V G+ +GPSG GK+T + M+ L EP+ G+I
Sbjct: 3 GVRLVDVWKVFGEVT--AVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQI 60
Query: 265 LLDGHDLKSLQLKWLRE------QMGLVSQEPALFAT-SIANNILLGKEDASMD------ 311
+ + + M V Q AL+ ++ +NI + +
Sbjct: 61 YIGDKLVADPEKGIFVPPKDRDIAM--VFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQ 118
Query: 312 RVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEAT 371
RV E A+ + P +LSGGQ+QR+A+ RA++R P++ L+DE
Sbjct: 119 RVREVAELLGLTELLNRKPR-----------ELSGGQRQRVALGRAIVRKPQVFLMDEPL 167
Query: 372 SALDAESELIVQ-RALEKIMSNR---TTIVVAHRLSTVRD-------VDTIMVLKNGQVV 420
S LDA +L V+ RA K + + TTI V H D D I V+ G +
Sbjct: 168 SNLDA--KLRVRMRAELKKLQRQLGVTTIYVTH------DQVEAMTMGDRIAVMNRGVLQ 219
Query: 421 ESGTHVDL 428
+ G+ ++
Sbjct: 220 QVGSPDEV 227
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* Length = 257 | Back alignment and structure |
|---|
Score = 92.6 bits (231), Expect = 6e-21
Identities = 51/217 (23%), Positives = 102/217 (47%), Gaps = 22/217 (10%)
Query: 225 NLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMG 284
++ SV+ G +GP+GSGKST+I+++ + G++ + D+ + + G
Sbjct: 25 GVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKE-PAELYHYG 83
Query: 285 LVS--QEPALFAT-SIANNILLG---KEDASMDRVI-------EAAKAANAHSFVE--GL 329
+V Q P ++ N+L+G ++ ++ + E A +E L
Sbjct: 84 IVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKL 143
Query: 330 PDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKI 389
Y + G +LSGGQ + + I RA++ NPK++++DE + + + + ++
Sbjct: 144 SHLYDRKAG----ELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLEL 199
Query: 390 MSNRTTIV-VAHRLSTVRDV-DTIMVLKNGQVVESGT 424
+ T + + HRL V + D + V+ NGQ++ G
Sbjct: 200 KAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGR 236
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* Length = 257 | Back alignment and structure |
|---|
Score = 79.1 bits (196), Expect = 2e-16
Identities = 53/214 (24%), Positives = 93/214 (43%), Gaps = 21/214 (9%)
Query: 855 NLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRR-KI 913
+++ V+ G ++G +GSGKST+I+++ F G V + DI N
Sbjct: 25 GVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDI--TNKEPAELYHY 82
Query: 914 GLVQ--QEPALFST-TIYENIKYGNEDASEIELMKATK----------AANAHGFISRMP 960
G+V+ Q P T+ EN+ G E L A + +
Sbjct: 83 GIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFL- 141
Query: 961 EGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLM 1020
+ +LSGGQ + V I RA++ NP ++++DE + + + I + +L
Sbjct: 142 -KLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELK 200
Query: 1021 E-GRTTIMVAHRLSTIRN-ADKIAVLQQGKV-AE 1051
G T +++ HRL + N D + V+ G++ AE
Sbjct: 201 AKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAE 234
|
| >3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A Length = 381 | Back alignment and structure |
|---|
Score = 89.9 bits (224), Expect = 3e-19
Identities = 72/250 (28%), Positives = 110/250 (44%), Gaps = 64/250 (25%)
Query: 834 NIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTV---------ISLVM 884
+++L+NV+ + ++ + +++NL + G + VG SG GKST+ I+
Sbjct: 3 SVQLQNVTKAWG---EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETIT--- 56
Query: 885 RFYDPISGTVLIDGYDIRTLNLRSLRRKIGLVQQEPALFS-TTIYENIKYG----NEDAS 939
SG + I + + R +G+V Q AL+ ++ EN+ +G
Sbjct: 57 ------SGDLFIGEKRMN--DTPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKE 108
Query: 940 EIELMKATKAANAHG---FISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILL 996
I + + A + R P+ LSGGQ+QRVAI R ++ PS+ L
Sbjct: 109 VIN-QRVNQVAEVLQLAHLLDRKPK-----------ALSGGQRQRVAIGRTLVAEPSVFL 156
Query: 997 LDEATSALDTA------SENLIQEALDKLMEGRTTIMVAH------RLSTIRNADKIAVL 1044
LDE S LD A E I +L GRT I V H L ADKI VL
Sbjct: 157 LDEPLSNLDAALRVQMRIE--ISRLHKRL--GRTMIYVTHDQVEAMTL-----ADKIVVL 207
Query: 1045 QQGKVAEIGS 1054
G+VA++G
Sbjct: 208 DAGRVAQVGK 217
|
| >3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A Length = 381 | Back alignment and structure |
|---|
Score = 84.9 bits (211), Expect = 2e-17
Identities = 72/243 (29%), Positives = 110/243 (45%), Gaps = 43/243 (17%)
Query: 205 QIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKI 264
++ V A+ +V +++N + G+ FVGPSG GKST++ M+ L TSG +
Sbjct: 3 SVQLQNVTKAWGE--VVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDL 60
Query: 265 LLDGHDLKSLQLKWLREQMGLVSQEPALFA-TSIANNI-----LLGKEDASMD-RVIEAA 317
+ + +G+V Q AL+ S+A N+ L G + ++ RV + A
Sbjct: 61 FIGEKRMNDTPPA--ERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVA 118
Query: 318 KAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAE 377
+ ++ P LSGGQ+QR+AI R ++ P + LLDE S LDA
Sbjct: 119 EVLQLAHLLDRKP-----------KALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDA- 166
Query: 378 SELIVQ-----RALEKIMSNRTTIVVAHRLSTVRD-------VDTIMVLKNGQVVESGTH 425
L VQ L K + RT I V H D D I+VL G+V + G
Sbjct: 167 -ALRVQMRIEISRLHKRL-GRTMIYVTH------DQVEAMTLADKIVVLDAGRVAQVGKP 218
Query: 426 VDL 428
++L
Sbjct: 219 LEL 221
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 77.9 bits (193), Expect = 5e-16
Identities = 56/230 (24%), Positives = 101/230 (43%), Gaps = 49/230 (21%)
Query: 225 NLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWL-REQM 283
++ V G+ +G +G+GK+T +S + L GKI+ +G D+ + + R +
Sbjct: 24 GIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMGI 83
Query: 284 GLVSQEPALFAT-SIANNILLG--------KEDASMDRVIEAAKAANAHSFVEGLPDGYQ 334
LV + +F ++ N+++G ++ + F P +
Sbjct: 84 ALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWIFSL--------F----PRLKE 131
Query: 335 TQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQ---RALEKIMS 391
GGT LSGG++Q +AI RA++ PK+L++DE + L + ++V ++KI
Sbjct: 132 RLKQLGGT-LSGGEQQMLAIGRALMSRPKLLMMDEPSLGL---APILVSEVFEVIQKINQ 187
Query: 392 NRTTIV-----------VAHRLSTVRDVDTIMVLKNGQVVESGTHVDLIS 430
TTI+ VAH VL+ GQ+V G +L+
Sbjct: 188 EGTTILLVEQNALGALKVAHY---------GYVLETGQIVLEGKASELLD 228
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 76.0 bits (188), Expect = 2e-15
Identities = 60/242 (24%), Positives = 110/242 (45%), Gaps = 34/242 (14%)
Query: 836 ELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVL 895
E++++ Y I + ++LKV G+ + ++G +G+GK+T +S + G ++
Sbjct: 8 EVQSLHVYYGA---IHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKII 64
Query: 896 IDGYDIRTLNLRSL-RRKIGLVQQEPALFST-TIYENIKYGNEDASEIELMKATKAANAH 953
+G DI + R I LV + +F T+YEN+ G A +
Sbjct: 65 FNGQDITNKPAHVINRMGIALVPEGRRIFPELTVYENLMMG-----------AYNRKDKE 113
Query: 954 GFISRMPEGYQS--HVGDRGVQ----LSGGQKQRVAIARAILKNPSILLLDEATSALDTA 1007
G + + + +R Q LSGG++Q +AI RA++ P +L++DE + L
Sbjct: 114 GIKRDLEWIFSLFPRLKERLKQLGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGL--- 170
Query: 1008 SENLIQEALDKLM----EGRTTIMV---AHRLSTIRNADKIAVLQQGKVAEIGSHEQLLR 1060
+ L+ E + + EG T ++V A ++ A VL+ G++ G +LL
Sbjct: 171 APILVSEVFEVIQKINQEGTTILLVEQNALG--ALKVAHYGYVLETGQIVLEGKASELLD 228
Query: 1061 KE 1062
E
Sbjct: 229 NE 230
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 82.0 bits (202), Expect = 7e-16
Identities = 47/238 (19%), Positives = 86/238 (36%), Gaps = 32/238 (13%)
Query: 795 APDIVKGSQALGPVFGILYRKTAIQPDDPASKEVTEIKGNIELRNVSFKYPVRPDITIFE 854
+ +A + R P P + + ++ S Y + +
Sbjct: 396 MTIFLHEKKAKDILDEFRKRAVDNIPVGPNFDDEEDEGEDLCNCEFSLAYGAKI---LLN 452
Query: 855 NLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRKIG 914
L++ R + G +G GKST++ + + G + +
Sbjct: 453 KTQLRLKRARRYGICGPNGCGKSTLMRAIAN--GQVDGFPTQEEC------------RTV 498
Query: 915 LVQQEPALF--STTIYENIKYGNEDASEIELMKATKAANAHGFISRMPEGYQSHVGDRGV 972
V+ + T++ + + E + GF E +
Sbjct: 499 YVEHDIDGTHSDTSVLDFV---FESGVGTK-EAIKDKLIEFGF---TDEMIAMPISA--- 548
Query: 973 QLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLMEGRTTIMVAH 1030
LSGG K ++A+ARA+L+N ILLLDE T+ LDT + + L+ G T+I ++H
Sbjct: 549 -LSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNTC--GITSITISH 603
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 76.2 bits (187), Expect = 4e-14
Identities = 46/240 (19%), Positives = 86/240 (35%), Gaps = 37/240 (15%)
Query: 166 AAIAKGKAAAANIISIIKENSHSSERPGDDGITLPKLAGQIEFSEVCFAYPSRPHMVFEN 225
I + A +I+ ++ + + G + + E AY ++ +
Sbjct: 396 MTIFLHEKKAKDILDEFRKRAVDNIPVGPNFDDEEDEGEDLCNCEFSLAYGAKI--LLNK 453
Query: 226 LNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGL 285
+ + + GP+G GKST++ + + +G + R
Sbjct: 454 TQLRLKRARRYGICGPNGCGKSTLM------------RAIANGQVDGFPTQEECR--TVY 499
Query: 286 VSQEPALFATSIANNILLGKEDASMDRVIEAA--KAANAHSFVEGL---PDGYQTQVGEG 340
V + + + + +D V E+ + + +
Sbjct: 500 VEHDIDGTHS----------DTSVLDFVFESGVGTKEAIKDKLIEFGFTDEMIAMPISA- 548
Query: 341 GTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAH 400
LSGG K ++A+ARAVLRN ILLLDE T+ LD + + L T+I ++H
Sbjct: 549 ---LSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNT--CGITSITISH 603
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 63.9 bits (155), Expect = 2e-10
Identities = 40/260 (15%), Positives = 90/260 (34%), Gaps = 37/260 (14%)
Query: 199 LPKLAGQIEFSE-VCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLY 257
L +G++ E AY + + + + +G + T+ +++
Sbjct: 723 LLPTSGEVYTHENCRIAYIKQHAFAHIESHLDKTPSEYIQWRFQTGEDRETMDRANRQIN 782
Query: 258 EPTS---GKILLDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNIL------------ 302
E + KI + + R + + F +
Sbjct: 783 ENDAEAMNKIFKIEGTPRRIAGIHSRRKFKNTYEYECSFLLGENIGMKSERWVPMMSVDN 842
Query: 303 -------LGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGG-----------TQL 344
L + + M ++ +A + F + G L
Sbjct: 843 AWIPRGELVESHSKMVAEVDMKEALASGQFRPLTRKEIEEHCSMLGLDPEIVSHSRIRGL 902
Query: 345 SGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLST 404
SGGQK ++ +A + P +++LDE T+ LD +S + +AL++ I++ H
Sbjct: 903 SGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKE--FEGGVIIITHSAEF 960
Query: 405 VRDV-DTIMVLKNGQVVESG 423
+++ + + +K+G++ SG
Sbjct: 961 TKNLTEEVWAVKDGRMTPSG 980
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 63.5 bits (154), Expect = 3e-10
Identities = 30/193 (15%), Positives = 71/193 (36%), Gaps = 20/193 (10%)
Query: 869 VGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRKIGLVQQEPALFSTTIY 928
+ + + + R + Y+ L ++ K ++ + I
Sbjct: 792 IFKIEGTPRRIAGIHSRRKFKNT-----YEYECSFLLGENIGMKSERWVPMMSVDNAWIP 846
Query: 929 ENIKYGNEDASEIELMKATKAANAHGFISRMPEGYQSHVGDRGV-----------QLSGG 977
+ + + + +A + F + + H G+ LSGG
Sbjct: 847 RG-ELVESHSKMVAEVDMKEALASGQFRPLTRKEIEEHCSMLGLDPEIVSHSRIRGLSGG 905
Query: 978 QKQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLMEGRTTIMVAHRLSTIRN 1037
QK ++ +A + P +++LDE T+ LD S + +AL + I++ H +N
Sbjct: 906 QKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEF--EGGVIIITHSAEFTKN 963
Query: 1038 -ADKIAVLQQGKV 1049
+++ ++ G++
Sbjct: 964 LTEEVWAVKDGRM 976
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 53.9 bits (129), Expect = 2e-07
Identities = 18/67 (26%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
Query: 206 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKIL 265
++ + + F YP ++NF A +GP+G+GKST+I+++ PTSG++
Sbjct: 672 VKVTNMEFQYPGTSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEVY 731
Query: 266 LDGHDLK 272
+ +
Sbjct: 732 T-HENCR 737
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 48.1 bits (114), Expect = 2e-05
Identities = 20/64 (31%), Positives = 36/64 (56%), Gaps = 1/64 (1%)
Query: 831 IKGNIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPI 890
K +++ N+ F+YP ++N + S +AV+G +G+GKST+I+++ P
Sbjct: 668 QKAIVKVTNMEFQYP-GTSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPT 726
Query: 891 SGTV 894
SG V
Sbjct: 727 SGEV 730
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 71.4 bits (174), Expect = 1e-12
Identities = 65/400 (16%), Positives = 115/400 (28%), Gaps = 117/400 (29%)
Query: 736 HISGFGYGVSQLLSLCSYALGLWYASVLIKQKGSNFGDIMKSFMVLIITALAVAETLALA 795
HI VS L L W + K +++ F+ E L
Sbjct: 53 HIIMSKDAVSGTLRL------FW----TLLSKQEE---MVQKFV----------EE-VLR 88
Query: 796 PDIVKGSQALGPVFGILYRKTAIQPDDPASKEVTEIKGNIELRNVS--F-KYPV-RPD-- 849
+ + L + P+ I+ L N + F KY V R
Sbjct: 89 IN-----------YKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPY 137
Query: 850 ITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMR-------FYDPI----SGTVLIDG 898
+ + + L L++ +++ + G GSGK+ V V I
Sbjct: 138 LKLRQAL-LELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPE 196
Query: 899 YDIRTLNLRSLRRKIGLVQQEPALFSTTIYENIKYGNEDASEI-ELMKATKAANA----- 952
+ L L +I + S+ I I + +E+ L+K+ N
Sbjct: 197 TVLEMLQ--KLLYQIDPNWTSRSDHSSNIKLRI---HSIQAELRRLLKSKPYENCLLVLL 251
Query: 953 --------HGF--------ISRMPEGYQSHVGDRGV--QLSGGQKQRVAIARAILKNPSI 994
+ F +R + V LS +++ +
Sbjct: 252 NVQNAKAWNAFNLSCKILLTTR----------FKQVTDFLSAATTTHISLD----HHSMT 297
Query: 995 LLLDEATS----ALDTASENLIQEALDKL-----MEGRTTIMVAHRLSTIRNADKIAVLQ 1045
L DE S LD ++L +E L + + L+T N + +
Sbjct: 298 LTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAE---SIRDGLATWDNWKHVNCDK 354
Query: 1046 QGKVAEIGSHEQL----LRKENGIYKQLIRLQQDKN-PEA 1080
+ E S L RK ++ +L + P
Sbjct: 355 LTTIIES-SLNVLEPAEYRK---MFDRLSVFPPSAHIPTI 390
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 62.6 bits (151), Expect = 6e-10
Identities = 71/462 (15%), Positives = 133/462 (28%), Gaps = 137/462 (29%)
Query: 251 SMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNILL------G 304
SM+ R+Y ++ D + R Q L ++ AL A N+L+ G
Sbjct: 106 SMMTRMYIEQRDRLYNDNQVFAKYNVS--RLQPYLKLRQ-ALLELRPAKNVLIDGVLGSG 162
Query: 305 KEDASMDRVIEAAKAANAHSFVEGLPDG------------------YQT---QVGEGGTQ 343
K + A ++ + Q Q+ T
Sbjct: 163 KT------WV-ALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTS 215
Query: 344 L---SGGQKQRIAIARAVLRN-------PKILL-LDEATSALDAESELIVQRALEKIMSN 392
S K RI +A LR LL L + ++ +
Sbjct: 216 RSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLL------NVQNAKAW-----NAFNL 264
Query: 393 RTTIVVAHRLSTVRDVDTIMVLKNGQVVESGTHVDLI--SKG---GEYAAL----VNLQS 443
I++ T R L TH+ L S E +L ++ +
Sbjct: 265 SCKILL-----TTRFKQVTDFLSAATT----THISLDHHSMTLTPDEVKSLLLKYLDCRP 315
Query: 444 SE-----HLSNPSSICYSGSSRYSSFRDFPSS----RRYDVE-----FESS----KRREL 485
+ +NP + S RD ++ + + + ESS + E
Sbjct: 316 QDLPREVLTTNPRRLSIIAES----IRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEY 371
Query: 486 QSSDQSFA--P-----SPSIWELLKLNAAEWPYAVLGSVGAILAGMEAPLFALGITHILT 538
+ + P + L+ W + V ++ + ++L
Sbjct: 372 RKMFDRLSVFPPSAHIPTILLSLI------WFDVIKSDVMVVVNKLHK--YSLVEKQPKE 423
Query: 539 AFYSPHDSQI-------------KRVVDQVALIFVGLAVVTIPVYLLQHYFYTLMGEHLT 585
+ S + + +VD + + L YFY+ +G HL
Sbjct: 424 STISIPSIYLELKVKLENEYALHRSIVDHYNIP-KTFDSDDLIPPYLDQYFYSHIGHHLK 482
Query: 586 ARV---RLSMFSAI------LSNEIGWFDLDENNTGLLISTL 618
R+++F + L +I N +G +++TL
Sbjct: 483 NIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTL 524
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 61.0 bits (147), Expect = 2e-09
Identities = 99/714 (13%), Positives = 205/714 (28%), Gaps = 207/714 (28%)
Query: 367 LDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTV---RDVDTIMVLKNGQVVESG 423
+D T + + I+ + + N V ++ ++D I++ K+ SG
Sbjct: 7 MDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKD---AVSG 63
Query: 424 THV---DLISKGGE-YAALVNLQSSEHLSNPSSICYSGSSRYSSFRDFPSSRRYDVEFES 479
T L+SK E V E + + Y S +
Sbjct: 64 TLRLFWTLLSKQEEMVQKFV-----EEVLRIN---YK--FLMSPIKTEQRQPSMMTRMYI 113
Query: 480 SKRRELQSSDQSFAP-----SPSIWE----LLKLNAAEWPYAVLGSVGA---ILAG---- 523
+R L + +Q FA + LL+L A+ + G +G+ +A
Sbjct: 114 EQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKN-VLIDGVLGSGKTWVALDVCL 172
Query: 524 -------MEAPLF--ALG-------ITHILTAFYSPHDSQIKRVVDQVALIFVGLAVVTI 567
M+ +F L + +L D D + I +
Sbjct: 173 SYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNI-------KL 225
Query: 568 PVYLLQHYFYTLMGEHLTARVRLSMFSAILSN----EIGW--FDLDENNTG---LLISTL 618
++ +Q L+ L +L N + W F+L LL +
Sbjct: 226 RIHSIQAELRRLLKSKPYENCLL-----VLLNVQNAKA-WNAFNL-----SCKILLTTRF 274
Query: 619 AADATLVRSALADRLSIIVQNVALTVTAFVIAFILSW------RLAAVVAASLPLLIGAF 672
+ +A +S+ ++ LT V + +L + L V + P + +
Sbjct: 275 KQVTDFLSAATTTHISLDHHSMTLT-PDEVKSLLLKYLDCRPQDLPREVLTTNPRRL-SI 332
Query: 673 VAEQLFLKGFGGDYNRAYSRATSVAREAIANIRTVAAYGIEKRISIQFAS--ELSQPNKQ 730
+AE + R+ +A +K +I +S L +
Sbjct: 333 IAESI--------------------RDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYR 372
Query: 731 ALLRGHISGFGYGV---SQLLSLCSYALGLWYASVLIKQKGSNFGDIMKSFMVLIITALA 787
+ +S F + LLSL +W+ + V+++
Sbjct: 373 KMFD-RLSVFPPSAHIPTILLSL------IWFD--------------VIKSDVMVVVNKL 411
Query: 788 VAETLALAPDIVKGSQALGPVFGI--LYRKTAIQPDDPASKEVTEIKGNIELRNVSFKY- 844
+L Q I +Y + ++ ++ + + ++ N+ +
Sbjct: 412 HKYSLVE-------KQPKESTISIPSIYLELKVKLENEYALH----RSIVDHYNIPKTFD 460
Query: 845 -----PVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGY 899
P D + ++ G L + ++L +
Sbjct: 461 SDDLIPPYLDQYFYSHI------GHHLKNIEHPER-----MTLFRMVF------------ 497
Query: 900 DIRTLNLRSLRRKI---GLVQQEPALFSTTIYENIKYG-----NEDASEIELMKATKAAN 951
L+ R L +KI T+ + Y N+ E L+ A
Sbjct: 498 ----LDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYE-RLVNAILD-- 550
Query: 952 AHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALD 1005
F+ ++ E ++++ L + +EA +
Sbjct: 551 ---FLPKIEENLICSKYTDLLRIA-------------LMAEDEAIFEEAHKQVQ 588
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 51.4 bits (122), Expect = 2e-06
Identities = 58/435 (13%), Positives = 129/435 (29%), Gaps = 145/435 (33%)
Query: 251 SMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGLVSQEPALFATSIA--------NNIL 302
MVQ+ E ++ + K+L + ++P++ +N +
Sbjct: 77 EMVQKFVE-----------EVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQV 125
Query: 303 LGKEDASMDRVIEAAKAANAHSFVEGL-PDGYQTQVGEGGTQLSGGQKQRIAIARAVLRN 361
K + S + + A + L P G G SG K +A+ V +
Sbjct: 126 FAKYNVSRLQPYLKLRQA-----LLELRPAKNVLIDGVLG---SG--KTWVAL--DVCLS 173
Query: 362 PKILLLDE-----ATSALDAESELIV---QRALEKIMSNRTTIV-----VAHRLSTVRD- 407
K+ + E ++ Q+ L +I N T+ + R+ +++
Sbjct: 174 YKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAE 233
Query: 408 ----------VDTIMVLKNGQVVESGTHV---DLISKGGEYAALVNLQSSEHLSNPSSIC 454
+ ++VL N V++ +L K L+
Sbjct: 234 LRRLLKSKPYENCLLVLLN---VQNAKAWNAFNLSCK-----ILL--------------- 270
Query: 455 YSGSSRYSSFRDFPSSRRYDVEFESSKRRELQSSDQSFAPSPSIWELLKLNAAEW----- 509
++R+ DF S+ L + P LL ++
Sbjct: 271 ---TTRFKQVTDFLSAATT-------THISLDHHSMTLTPDEVK-SLL----LKYLDCRP 315
Query: 510 ----PYAVLGSVGAILAGMEAPLFALGITHILTAFYSPHDSQIKRV----VDQVALIFVG 561
+ + P L I+ + D++ I +
Sbjct: 316 QDLPREVLTTN----------PR-RLS---IIAESIRDGLATWDNWKHVNCDKLTTI-IE 360
Query: 562 LAVVTIPVYLLQHYFYTLM----GEHLTARVRLSMFSAILSNEIGWFDLDENNTGLLIST 617
++ + + F L H+ + LS+ WFD+ +++ ++++
Sbjct: 361 SSLNVLEPAEYRKMFDRLSVFPPSAHIPTIL-LSLI---------WFDVIKSDVMVVVN- 409
Query: 618 LAADATLVRSALADR 632
L + +L ++
Sbjct: 410 -----KLHKYSLVEK 419
|
| >2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A* Length = 250 | Back alignment and structure |
|---|
Score = 67.2 bits (165), Expect = 2e-12
Identities = 56/214 (26%), Positives = 89/214 (41%), Gaps = 25/214 (11%)
Query: 226 LNFSVDAGKTFAFVGPSGSGKSTIIS--MVQRLYEPTSGKILLDGHDLKSLQLKWLREQM 283
+N V G+ A +GP+G+GKST+ Y G+ILLDG ++ L R +
Sbjct: 22 VNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSP-DERARK 80
Query: 284 G--LVSQEP--------ALFATSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGY 333
G L Q P A F + V E + + Y
Sbjct: 81 GLFLAFQYPVEVPGVTIANFLRLALQAK--LGREVG---VAEFWTKVKKALELLDWDESY 135
Query: 334 -QTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMS- 391
+ EG SGG+K+R I + ++ P +LDE S LD ++ +V R + +
Sbjct: 136 LSRYLNEG---FSGGEKKRNEILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMRGP 192
Query: 392 NRTTIVVAH--RLSTVRDVDTIMVLKNGQVVESG 423
N +V+ H R+ D + V+ +G+VV +G
Sbjct: 193 NFGALVITHYQRILNYIQPDKVHVMMDGRVVATG 226
|
| >2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A* Length = 250 | Back alignment and structure |
|---|
Score = 52.5 bits (127), Expect = 2e-07
Identities = 55/225 (24%), Positives = 95/225 (42%), Gaps = 27/225 (12%)
Query: 849 DITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVM--RFYDPISGTVLIDGYDIRTLNL 906
TI + +NL V G A++G +G+GKST+ ++ Y G +L+DG +I L+
Sbjct: 15 GETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSP 74
Query: 907 --RSLRRKIGLVQQEP--------ALFSTTIYENIKYGNEDASEIELMKATKAANAHGFI 956
R+ R+ + L Q P A F + + E K A +
Sbjct: 75 DERA-RKGLFLAFQYPVEVPGVTIANFLRLALQAK--LGREVGVAEFWTKVKKALE---L 128
Query: 957 SRMPEGYQSHVGDRGVQ--LSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQE 1014
E Y R + SGG+K+R I + ++ P+ +LDE S LD + ++
Sbjct: 129 LDWDESY----LSRYLNEGFSGGEKKRNEILQLLVLEPTYAVLDETDSGLDIDALKVVAR 184
Query: 1015 ALDKLM-EGRTTIMVAH--RLSTIRNADKIAVLQQGKVAEIGSHE 1056
++ + +++ H R+ DK+ V+ G+V G E
Sbjct: 185 GVNAMRGPNFGALVITHYQRILNYIQPDKVHVMMDGRVVATGGPE 229
|
| >2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A Length = 267 | Back alignment and structure |
|---|
Score = 67.2 bits (165), Expect = 3e-12
Identities = 57/214 (26%), Positives = 96/214 (44%), Gaps = 21/214 (9%)
Query: 226 LNFSVDAGKTFAFVGPSGSGKSTIIS--MVQRLYEPTSGKILLDGHDLKSLQLKWLREQM 283
L+ V G+ A +GP+GSGKST+ + + YE T G + G DL +L R
Sbjct: 39 LSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSP-EDRAGE 97
Query: 284 G--LVSQEP--------ALFATSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGY 333
G + Q P F + N + + ++DR + + +P+
Sbjct: 98 GIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDR-FDFQDLMEEKIALLKMPEDL 156
Query: 334 -QTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMS- 391
V G SGG+K+R I + + P++ +LDE+ S LD ++ +V + +
Sbjct: 157 LTRSVNVG---FSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDG 213
Query: 392 NRTTIVVAH--RLSTVRDVDTIMVLKNGQVVESG 423
R+ I+V H R+ D + VL G++V+SG
Sbjct: 214 KRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSG 247
|
| >2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A Length = 267 | Back alignment and structure |
|---|
Score = 52.9 bits (128), Expect = 1e-07
Identities = 63/240 (26%), Positives = 103/240 (42%), Gaps = 27/240 (11%)
Query: 849 DITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVM--RFYDPISGTVLIDGYDIRTL-- 904
D I L+L V G A++G +GSGKST+ + + Y+ GTV G D+ L
Sbjct: 32 DKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSP 91
Query: 905 NLRSLRRKIGLVQQEP--------ALFSTTIYENIK--YGNEDASEIELMKATKAANAHG 954
R+ I + Q P F T ++ G E + + A
Sbjct: 92 EDRA-GEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIA-- 148
Query: 955 FISRMPEGYQSHVGDRGVQ--LSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLI 1012
+ +MPE + R V SGG+K+R I + + P + +LDE+ S LD + ++
Sbjct: 149 -LLKMPEDLLT----RSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVV 203
Query: 1013 QEALDKLM-EGRTTIMVAH--RLSTIRNADKIAVLQQGKVAEIGSHEQLLRKENGIYKQL 1069
+ ++ L R+ I+V H R+ D + VL QG++ + G + + E Y L
Sbjct: 204 ADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSGDFTLVKQLEEQGYGWL 263
|
| >3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B Length = 339 | Back alignment and structure |
|---|
Score = 62.8 bits (152), Expect = 2e-10
Identities = 25/161 (15%), Positives = 54/161 (33%), Gaps = 15/161 (9%)
Query: 896 IDGYDIRTLNLRSLRRKIGLVQQEPALFSTTIYENIKYGNEDASEIELMKATKAA---NA 952
+D ++ L L+ G ++ + E+ + +
Sbjct: 163 LDKFETAYKKLSELKGGSGGTEELIEKVKKYKALAREAALSKIGELASEIFAEFTEGKYS 222
Query: 953 HGFISRMPEGYQSHVGDRGV-----QLSGGQKQRV------AIARAILKNPSILLLDEAT 1001
+ + V G LSGG++ + A++ + S+L+LDE T
Sbjct: 223 EVVVRAEENKVRLFVVWEGKERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPT 282
Query: 1002 SALDTASENLIQEALDKLME-GRTTIMVAHRLSTIRNADKI 1041
LD + +++ ++ I+V+H AD +
Sbjct: 283 PYLDEERRRKLITIMERYLKKIPQVILVSHDEELKDAADHV 323
|
| >3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B Length = 339 | Back alignment and structure |
|---|
Score = 51.2 bits (122), Expect = 9e-07
Identities = 20/81 (24%), Positives = 37/81 (45%), Gaps = 7/81 (8%)
Query: 342 TQLSGGQKQ------RIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSN-RT 394
T LSGG++ R+A++ + +L+LDE T LD E + +E+ +
Sbjct: 247 TFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQ 306
Query: 395 TIVVAHRLSTVRDVDTIMVLK 415
I+V+H D ++ +
Sbjct: 307 VILVSHDEELKDAADHVIRIS 327
|
| >1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B* Length = 148 | Back alignment and structure |
|---|
Score = 53.2 bits (128), Expect = 3e-08
Identities = 18/76 (23%), Positives = 34/76 (44%), Gaps = 7/76 (9%)
Query: 973 QLSGGQKQRVAIA------RAILKNPSILLLDEATSALDTASENLIQEALDKLME-GRTT 1025
LSGG++ + +A + S+L+LDE T LD + +++ ++
Sbjct: 57 FLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQV 116
Query: 1026 IMVAHRLSTIRNADKI 1041
I+V+H AD +
Sbjct: 117 ILVSHDEELKDAADHV 132
|
| >1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B* Length = 148 | Back alignment and structure |
|---|
Score = 45.9 bits (109), Expect = 7e-06
Identities = 19/87 (21%), Positives = 35/87 (40%), Gaps = 8/87 (9%)
Query: 332 GYQTQVGEGGTQLSGGQKQRIAIA------RAVLRNPKILLLDEATSALDAESELIVQRA 385
++ T LSGG++ + +A + +L+LDE T LD E +
Sbjct: 47 VWEG-KERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITI 105
Query: 386 LEKIMSN-RTTIVVAHRLSTVRDVDTI 411
+E+ + I+V+H D +
Sbjct: 106 MERYLKKIPQVILVSHDEELKDAADHV 132
|
| >3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B* Length = 371 | Back alignment and structure |
|---|
Score = 50.6 bits (121), Expect = 2e-06
Identities = 31/151 (20%), Positives = 52/151 (34%), Gaps = 11/151 (7%)
Query: 905 NLRSLRRKIGLVQQEPALFSTTIYENIKYGNEDASEIELMKATKAANAHGFISRMPEGYQ 964
L +RR G + L + KY NE SE +L + +
Sbjct: 216 YLDKVRRIFGRNGFQAYLREKYVPLIQKYLNEAFSEFDLPYSFVELTKDFEVRVHAPNGV 275
Query: 965 SHVGDRGVQLSGGQKQRVAIARAI-------LKNPSILLLDEATSALDTASENLIQEALD 1017
+ LSGG++ VA++ + ++LDE T LD + E
Sbjct: 276 LTID----NLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFR 331
Query: 1018 KLMEGRTTIMVAHRLSTIRNADKIAVLQQGK 1048
K+ I++ H AD I +++
Sbjct: 332 KVKSIPQMIIITHHRELEDVADVIINVKKDG 362
|
| >3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B* Length = 371 | Back alignment and structure |
|---|
Score = 46.8 bits (111), Expect = 3e-05
Identities = 25/85 (29%), Positives = 38/85 (44%), Gaps = 8/85 (9%)
Query: 343 QLSGGQKQRI------AIARAVLRNP-KILLLDEATSALDAESELIVQRALEKIMSNRTT 395
LSGG++ + AIA A++ N + ++LDE T LD + K+ S
Sbjct: 280 NLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVKSIPQM 339
Query: 396 IVVAHRLSTVRDVDT-IMVLKNGQV 419
I++ H D I V K+G V
Sbjct: 340 IIITHHRELEDVADVIINVKKDGNV 364
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
No hit with probability above 80.00
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| 1082 | ||||
| d2hyda1 | 255 | c.37.1.12 (A:324-578) Putative multidrug export AT | 1e-103 | |
| d2hyda1 | 255 | c.37.1.12 (A:324-578) Putative multidrug export AT | 1e-101 | |
| d3b60a1 | 253 | c.37.1.12 (A:329-581) Multidrug resistance ABC tra | 2e-97 | |
| d3b60a1 | 253 | c.37.1.12 (A:329-581) Multidrug resistance ABC tra | 9e-97 | |
| d1jj7a_ | 251 | c.37.1.12 (A:) Peptide transporter Tap1, C-termina | 1e-91 | |
| d1jj7a_ | 251 | c.37.1.12 (A:) Peptide transporter Tap1, C-termina | 5e-89 | |
| d2pmka1 | 241 | c.37.1.12 (A:467-707) Haemolysin B ATP-binding pro | 1e-90 | |
| d2pmka1 | 241 | c.37.1.12 (A:467-707) Haemolysin B ATP-binding pro | 2e-86 | |
| d1mv5a_ | 242 | c.37.1.12 (A:) Multidrug resistance ABC transporte | 1e-87 | |
| d1mv5a_ | 242 | c.37.1.12 (A:) Multidrug resistance ABC transporte | 1e-85 | |
| d1r0wa_ | 281 | c.37.1.12 (A:) Cystic fibrosis transmembrane condu | 2e-75 | |
| d1r0wa_ | 281 | c.37.1.12 (A:) Cystic fibrosis transmembrane condu | 8e-75 | |
| d1l2ta_ | 230 | c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jann | 1e-53 | |
| d1l2ta_ | 230 | c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jann | 2e-52 | |
| d1l7vc_ | 231 | c.37.1.12 (C:) ABC transporter involved in vitamin | 3e-49 | |
| d1l7vc_ | 231 | c.37.1.12 (C:) ABC transporter involved in vitamin | 4e-45 | |
| d3dhwc1 | 240 | c.37.1.12 (C:1-240) Methionine import ATP-binding | 5e-46 | |
| d3dhwc1 | 240 | c.37.1.12 (C:1-240) Methionine import ATP-binding | 4e-43 | |
| d1v43a3 | 239 | c.37.1.12 (A:7-245) Hypothetical protein PH0022, N | 9e-46 | |
| d1v43a3 | 239 | c.37.1.12 (A:7-245) Hypothetical protein PH0022, N | 3e-45 | |
| d1b0ua_ | 258 | c.37.1.12 (A:) ATP-binding subunit of the histidin | 1e-45 | |
| d1b0ua_ | 258 | c.37.1.12 (A:) ATP-binding subunit of the histidin | 2e-43 | |
| d1sgwa_ | 200 | c.37.1.12 (A:) Putative ABC transporter PF0895 {Py | 3e-40 | |
| d1sgwa_ | 200 | c.37.1.12 (A:) Putative ABC transporter PF0895 {Py | 4e-36 | |
| d1g2912 | 240 | c.37.1.12 (1:1-240) Maltose transport protein MalK | 5e-40 | |
| d1g2912 | 240 | c.37.1.12 (1:1-240) Maltose transport protein MalK | 3e-38 | |
| d1vpla_ | 238 | c.37.1.12 (A:) Putative ABC transporter TM0544 {Th | 4e-39 | |
| d1vpla_ | 238 | c.37.1.12 (A:) Putative ABC transporter TM0544 {Th | 6e-37 | |
| d1g6ha_ | 254 | c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jann | 1e-38 | |
| d1g6ha_ | 254 | c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jann | 3e-37 | |
| d2awna2 | 232 | c.37.1.12 (A:4-235) Maltose transport protein MalK | 1e-38 | |
| d2awna2 | 232 | c.37.1.12 (A:4-235) Maltose transport protein MalK | 4e-36 | |
| d1ji0a_ | 240 | c.37.1.12 (A:) Branched chain aminoacid ABC transp | 3e-37 | |
| d1ji0a_ | 240 | c.37.1.12 (A:) Branched chain aminoacid ABC transp | 5e-36 | |
| d2onka1 | 240 | c.37.1.12 (A:1-240) Molybdate/tungstate import ATP | 8e-36 | |
| d2onka1 | 240 | c.37.1.12 (A:1-240) Molybdate/tungstate import ATP | 1e-34 | |
| d1oxxk2 | 242 | c.37.1.12 (K:1-242) Glucose transport protein GlcV | 4e-35 | |
| d1oxxk2 | 242 | c.37.1.12 (K:1-242) Glucose transport protein GlcV | 1e-33 | |
| d3d31a2 | 229 | c.37.1.12 (A:1-229) Sulfate/molybdate ABC transpor | 2e-34 | |
| d3d31a2 | 229 | c.37.1.12 (A:1-229) Sulfate/molybdate ABC transpor | 3e-32 | |
| d1ye8a1 | 178 | c.37.1.11 (A:1-178) Hypothetical kinase-like prote | 7e-26 | |
| d1ye8a1 | 178 | c.37.1.11 (A:1-178) Hypothetical kinase-like prote | 2e-24 | |
| g1ii8.1 | 369 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 2e-12 | |
| g1ii8.1 | 369 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 1e-10 | |
| g1f2t.1 | 292 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 3e-12 | |
| g1f2t.1 | 292 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 2e-10 | |
| g1f2t.1 | 292 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 4e-05 | |
| d2i3ba1 | 189 | c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 | 6e-08 | |
| d2i3ba1 | 189 | c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 | 9e-07 | |
| d2hyda2 | 323 | f.37.1.1 (A:1-323) Putative multidrug export ATP-b | 1e-05 | |
| d3b60a2 | 319 | f.37.1.1 (A:10-328) Multidrug resistance ABC trans | 2e-05 | |
| d1w1wa_ | 427 | c.37.1.12 (A:) Smc head domain {Baker's yeast (Sac | 3e-04 | |
| d1znwa1 | 182 | c.37.1.1 (A:20-201) Guanylate kinase {Mycobacteriu | 0.004 |
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 255 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Score = 321 bits (825), Expect = e-103
Identities = 127/254 (50%), Positives = 180/254 (70%), Gaps = 2/254 (0%)
Query: 821 DDPASKEVTEIKGNIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVI 880
+ ++ + +G I++ +VSF+Y + I +++NL + G ++A VG SG GKST+I
Sbjct: 3 NGVGAQPIEIKQGRIDIDHVSFQYNDN-EAPILKDINLSIEKGETVAFVGMSGGGKSTLI 61
Query: 881 SLVMRFYDPISGTVLIDGYDIRTLNLRSLRRKIGLVQQEPALFSTTIYENIKYGNEDASE 940
+L+ RFYD SG +LIDG++I+ SLR +IGLVQQ+ LFS T+ ENI G A++
Sbjct: 62 NLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGRPTATD 121
Query: 941 IELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEA 1000
E+++A K ANAH FI +P+GY + VG+RGV+LSGGQKQR++IAR L NP IL+LDEA
Sbjct: 122 EEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEA 181
Query: 1001 TSALDTASENLIQEALDKLMEGRTTIMVAHRLSTIRNADKIAVLQQGKVAEIGSHEQLLR 1060
TSALD SE++IQEALD L + RTT++VAHRLSTI +ADKI V++ G + E G+H +L+
Sbjct: 182 TSALDLESESIIQEALDVLSKDRTTLIVAHRLSTITHADKIVVIENGHIVETGTHRELIA 241
Query: 1061 KENGIYKQLIRLQQ 1074
K G Y+ L +Q
Sbjct: 242 K-QGAYEHLYSIQN 254
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 255 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Score = 317 bits (813), Expect = e-101
Identities = 124/245 (50%), Positives = 175/245 (71%)
Query: 199 LPKLAGQIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYE 258
+ G+I+ V F Y + +++N S++ G+T AFVG SG GKST+I+++ R Y+
Sbjct: 10 IEIKQGRIDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYD 69
Query: 259 PTSGKILLDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNILLGKEDASMDRVIEAAK 318
TSG+IL+DGH++K LR Q+GLV Q+ LF+ ++ NILLG+ A+ + V+EAAK
Sbjct: 70 VTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGRPTATDEEVVEAAK 129
Query: 319 AANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAES 378
ANAH F+ LP GY T+VGE G +LSGGQKQR++IAR L NP IL+LDEATSALD ES
Sbjct: 130 MANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLES 189
Query: 379 ELIVQRALEKIMSNRTTIVVAHRLSTVRDVDTIMVLKNGQVVESGTHVDLISKGGEYAAL 438
E I+Q AL+ + +RTT++VAHRLST+ D I+V++NG +VE+GTH +LI+K G Y L
Sbjct: 190 ESIIQEALDVLSKDRTTLIVAHRLSTITHADKIVVIENGHIVETGTHRELIAKQGAYEHL 249
Query: 439 VNLQS 443
++Q+
Sbjct: 250 YSIQN 254
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 253 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Score = 306 bits (786), Expect = 2e-97
Identities = 122/252 (48%), Positives = 168/252 (66%), Gaps = 2/252 (0%)
Query: 194 DDG-ITLPKLAGQIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISM 252
D+G + + G +EF V F YP R N+N + AGKT A VG SGSGKSTI S+
Sbjct: 1 DEGKRVIDRATGDLEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASL 60
Query: 253 VQRLYEPTSGKILLDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNILLGK-EDASMD 311
+ R Y+ G IL+DGHDL+ L LR Q+ LVSQ LF ++ANNI + E+ S +
Sbjct: 61 ITRFYDIDEGHILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEEYSRE 120
Query: 312 RVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEAT 371
++ EAA+ A A F+ + +G T +GE G LSGGQ+QRIAIARA+LR+ IL+LDEAT
Sbjct: 121 QIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEAT 180
Query: 372 SALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRDVDTIMVLKNGQVVESGTHVDLISK 431
SALD ESE +Q AL+++ NRT++V+AHRLST+ D I+V+++G +VE GTH +L+++
Sbjct: 181 SALDTESERAIQAALDELQKNRTSLVIAHRLSTIEQADEIVVVEDGIIVERGTHSELLAQ 240
Query: 432 GGEYAALVNLQS 443
G YA L +Q
Sbjct: 241 HGVYAQLHKMQF 252
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 253 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Score = 305 bits (782), Expect = 9e-97
Identities = 120/253 (47%), Positives = 177/253 (69%), Gaps = 3/253 (1%)
Query: 822 DPASKEVTEIKGNIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVIS 881
D + + G++E RNV+F YP R ++ N+NLK+ AG+++A+VG+SGSGKST+ S
Sbjct: 1 DEGKRVIDRATGDLEFRNVTFTYPGR-EVPALRNINLKIPAGKTVALVGRSGSGKSTIAS 59
Query: 882 LVMRFYDPISGTVLIDGYDIRTLNLRSLRRKIGLVQQEPALFSTTIYENIKYGN-EDASE 940
L+ RFYD G +L+DG+D+R L SLR ++ LV Q LF+ T+ NI Y E+ S
Sbjct: 60 LITRFYDIDEGHILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEEYSR 119
Query: 941 IELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEA 1000
++ +A + A A FI++M G + +G+ GV LSGGQ+QR+AIARA+L++ IL+LDEA
Sbjct: 120 EQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEA 179
Query: 1001 TSALDTASENLIQEALDKLMEGRTTIMVAHRLSTIRNADKIAVLQQGKVAEIGSHEQLLR 1060
TSALDT SE IQ ALD+L + RT++++AHRLSTI AD+I V++ G + E G+H +LL
Sbjct: 180 TSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEQADEIVVVEDGIIVERGTHSELLA 239
Query: 1061 KENGIYKQLIRLQ 1073
+ +G+Y QL ++Q
Sbjct: 240 Q-HGVYAQLHKMQ 251
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 291 bits (745), Expect = 1e-91
Identities = 94/245 (38%), Positives = 150/245 (61%), Gaps = 4/245 (1%)
Query: 830 EIKGNIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDP 889
++G ++ ++VSF YP RPD+ + + L + G A+VG +GSGKSTV +L+ Y P
Sbjct: 7 HLEGLVQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQP 66
Query: 890 ISGTVLIDGYDIRTLNLRSLRRKIGLVQQEPALFSTTIYENIKYG-NEDASEIELMKATK 948
G +L+DG + R L R++ V QEP +F ++ ENI YG + + E+ A
Sbjct: 67 TGGQLLLDGKPLPQYEHRYLHRQVAAVGQEPQVFGRSLQENIAYGLTQKPTMEEITAAAV 126
Query: 949 AANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTAS 1008
+ AH FIS +P+GY + V + G QLSGGQ+Q VA+ARA+++ P +L+LD+ATSALD S
Sbjct: 127 KSGAHSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARALIRKPCVLILDDATSALDANS 186
Query: 1009 ENLIQEALDKLME--GRTTIMVAHRLSTIRNADKIAVLQQGKVAEIGSHEQLLRKENGIY 1066
+ +++ L + E R+ +++ LS + AD I L+ G + E G+H+QL+ K G Y
Sbjct: 187 QLQVEQLLYESPERYSRSVLLITQHLSLVEQADHILFLEGGAIREGGTHQQLMEK-KGCY 245
Query: 1067 KQLIR 1071
+++
Sbjct: 246 WAMVQ 250
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 284 bits (727), Expect = 5e-89
Identities = 108/248 (43%), Positives = 162/248 (65%), Gaps = 4/248 (1%)
Query: 197 ITLPKLAGQIEFSEVCFAYPSRP-HMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQR 255
+T L G ++F +V FAYP+RP +V + L F++ G+ A VGP+GSGKST+ +++Q
Sbjct: 3 LTPLHLEGLVQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQN 62
Query: 256 LYEPTSGKILLDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNILLG-KEDASMDRVI 314
LY+PT G++LLDG L + ++L Q+ V QEP +F S+ NI G + +M+ +
Sbjct: 63 LYQPTGGQLLLDGKPLPQYEHRYLHRQVAAVGQEPQVFGRSLQENIAYGLTQKPTMEEIT 122
Query: 315 EAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSAL 374
AA + AHSF+ GLP GY T+V E G+QLSGGQ+Q +A+ARA++R P +L+LD+ATSAL
Sbjct: 123 AAAVKSGAHSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARALIRKPCVLILDDATSAL 182
Query: 375 DAESELIVQRALEKIM--SNRTTIVVAHRLSTVRDVDTIMVLKNGQVVESGTHVDLISKG 432
DA S+L V++ L + +R+ +++ LS V D I+ L+ G + E GTH L+ K
Sbjct: 183 DANSQLQVEQLLYESPERYSRSVLLITQHLSLVEQADHILFLEGGAIREGGTHQQLMEKK 242
Query: 433 GEYAALVN 440
G Y A+V
Sbjct: 243 GCYWAMVQ 250
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} Length = 241 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Score = 287 bits (737), Expect = 1e-90
Identities = 112/242 (46%), Positives = 165/242 (68%), Gaps = 1/242 (0%)
Query: 834 NIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGT 893
+I RN+ F+Y I +N+NL + G + +VG+SGSGKST+ L+ RFY P +G
Sbjct: 1 DITFRNIRFRYKPD-SPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQ 59
Query: 894 VLIDGYDIRTLNLRSLRRKIGLVQQEPALFSTTIYENIKYGNEDASEIELMKATKAANAH 953
VLIDG+D+ + LRR++G+V Q+ L + +I +NI N S +++ A K A AH
Sbjct: 60 VLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAH 119
Query: 954 GFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQ 1013
FIS + EGY + VG++G LSGGQ+QR+AIARA++ NP IL+ DEATSALD SE++I
Sbjct: 120 DFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIM 179
Query: 1014 EALDKLMEGRTTIMVAHRLSTIRNADKIAVLQQGKVAEIGSHEQLLRKENGIYKQLIRLQ 1073
+ K+ +GRT I++AHRLST++NAD+I V+++GK+ E G H++LL + +Y L +LQ
Sbjct: 180 RNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQLQ 239
Query: 1074 QD 1075
D
Sbjct: 240 SD 241
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} Length = 241 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Score = 276 bits (707), Expect = 2e-86
Identities = 116/239 (48%), Positives = 159/239 (66%), Gaps = 1/239 (0%)
Query: 206 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKIL 265
I F + F Y ++ +N+N S+ G+ VG SGSGKST+ ++QR Y P +G++L
Sbjct: 2 ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVL 61
Query: 266 LDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNILLGKEDASMDRVIEAAKAANAHSF 325
+DGHDL WLR Q+G+V Q+ L SI +NI L S+++VI AAK A AH F
Sbjct: 62 IDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDF 121
Query: 326 VEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRA 385
+ L +GY T VGE G LSGGQ+QRIAIARA++ NPKIL+ DEATSALD ESE ++ R
Sbjct: 122 ISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRN 181
Query: 386 LEKIMSNRTTIVVAHRLSTVRDVDTIMVLKNGQVVESGTHVDLISK-GGEYAALVNLQS 443
+ KI RT I++AHRLSTV++ D I+V++ G++VE G H +L+S+ Y+ L LQS
Sbjct: 182 MHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQLQS 240
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Score = 280 bits (717), Expect = 1e-87
Identities = 102/240 (42%), Positives = 158/240 (65%), Gaps = 4/240 (1%)
Query: 835 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTV 894
+ R+V F Y I +++ + +A G SG GKST+ SL+ RFY P +G +
Sbjct: 2 LSARHVDFAYD--DSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEI 59
Query: 895 LIDGYDIRTLNLRSLRRKIGLVQQEPALFSTTIYENIKYGNE-DASEIELMKATKAANAH 953
IDG I ++L + R +IG V Q+ A+ + TI EN+ YG E D ++ +L + A A
Sbjct: 60 TIDGQPIDNISLENWRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFAR 119
Query: 954 GFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQ 1013
F+ MP+ + VG+RGV++SGGQ+QR+AIARA L+NP IL+LDEAT++LD+ SE+++Q
Sbjct: 120 SFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQ 179
Query: 1014 EALDKLMEGRTTIMVAHRLSTIRNADKIAVLQQGKVAEIGSHEQLLRKENGIYKQLIRLQ 1073
+ALD LM+GRTT+++AHRLSTI +ADKI +++G++ G H +L+ + +Y + + Q
Sbjct: 180 KALDSLMKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVAT-HPLYAKYVSEQ 238
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Score = 274 bits (703), Expect = 1e-85
Identities = 108/240 (45%), Positives = 158/240 (65%), Gaps = 2/240 (0%)
Query: 206 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKIL 265
+ V FAY + +++F AF GPSG GKSTI S+++R Y+PT+G+I
Sbjct: 2 LSARHVDFAYDDSEQ-ILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEIT 60
Query: 266 LDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNILLGKE-DASMDRVIEAAKAANAHS 324
+DG + ++ L+ R Q+G VSQ+ A+ A +I N+ G E D + + + + A A S
Sbjct: 61 IDGQPIDNISLENWRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARS 120
Query: 325 FVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQR 384
FVE +PD T+VGE G ++SGGQ+QR+AIARA LRNPKIL+LDEAT++LD+ESE +VQ+
Sbjct: 121 FVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQK 180
Query: 385 ALEKIMSNRTTIVVAHRLSTVRDVDTIMVLKNGQVVESGTHVDLISKGGEYAALVNLQSS 444
AL+ +M RTT+V+AHRLST+ D D I ++ GQ+ SG H +L++ YA V+ Q +
Sbjct: 181 ALDSLMKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVATHPLYAKYVSEQLT 240
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 248 bits (634), Expect = 2e-75
Identities = 64/256 (25%), Positives = 115/256 (44%), Gaps = 20/256 (7%)
Query: 820 PDDPASKEVTEIKGNIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTV 879
++ + + N+ ++ P + +N+NL + G LA+ G +GSGK+++
Sbjct: 24 QQSNGDRKHSSDENNVSFSHLCLVG--NP---VLKNINLNIEKGEMLAITGSTGSGKTSL 78
Query: 880 ISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRKIGLVQQEPALFSTTIYENIKYGNEDAS 939
+ L++ + G + G ++ Q + TI ENI +G
Sbjct: 79 LMLILGELEASEGIIKHSG-------------RVSFCSQFSWIMPGTIKENIIFGVS-YD 124
Query: 940 EIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDE 999
E KA I++ E + +G+ GV LSGGQ+ R+++ARA+ K+ + LLD
Sbjct: 125 EYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDS 184
Query: 1000 ATSALDTAS-ENLIQEALDKLMEGRTTIMVAHRLSTIRNADKIAVLQQGKVAEIGSHEQL 1058
LD + E + + + KLM +T I+V ++ +R ADKI +L QG G+ +L
Sbjct: 185 PFGYLDVFTEEQVFESCVCKLMANKTRILVTSKMEHLRKADKILILHQGSSYFYGTFSEL 244
Query: 1059 LRKENGIYKQLIRLQQ 1074
+L+
Sbjct: 245 QSLRPDFSSKLMGYDT 260
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 246 bits (629), Expect = 8e-75
Identities = 65/257 (25%), Positives = 118/257 (45%), Gaps = 20/257 (7%)
Query: 194 DDGITLPKLAGQIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMV 253
+ + FS +C P V +N+N +++ G+ A G +GSGK++++ ++
Sbjct: 27 NGDRKHSSDENNVSFSHLCLVG--NP--VLKNINLNIEKGEMLAITGSTGSGKTSLLMLI 82
Query: 254 QRLYEPTSGKILLDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNILLGKEDASMDRV 313
E + G I G ++ SQ + +I NI+ G R
Sbjct: 83 LGELEASEGIIKHSG-------------RVSFCSQFSWIMPGTIKENIIFGVS-YDEYRY 128
Query: 314 IEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSA 373
KA + + T +GEGG LSGGQ+ RI++ARAV ++ + LLD
Sbjct: 129 KSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGY 188
Query: 374 LDAES-ELIVQRALEKIMSNRTTIVVAHRLSTVRDVDTIMVLKNGQVVESGTHVDLISKG 432
LD + E + + + K+M+N+T I+V ++ +R D I++L G GT +L S
Sbjct: 189 LDVFTEEQVFESCVCKLMANKTRILVTSKMEHLRKADKILILHQGSSYFYGTFSELQSLR 248
Query: 433 GEYAA-LVNLQSSEHLS 448
++++ L+ + + +
Sbjct: 249 PDFSSKLMGYDTFDQFT 265
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 185 bits (470), Expect = 1e-53
Identities = 75/229 (32%), Positives = 120/229 (52%), Gaps = 13/229 (5%)
Query: 835 IELRNVSFKYPVR-PDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGT 893
I+L+NV+ Y + I +N+NL + G ++++G SGSGKST+++++ P G
Sbjct: 2 IKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGE 61
Query: 894 VLIDGYDIRTLNLRSLRR----KIGLVQQEPALF-STTIYENIKYGNEDA--SEIELMKA 946
V ID L+ L + KIG V Q+ L T EN++ + +
Sbjct: 62 VYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEER 121
Query: 947 TKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDT 1006
K A ++ + E + +H + QLSGGQ+QRVAIARA+ NP I+L D+ T ALD+
Sbjct: 122 RKRALECLKMAELEERFANH---KPNQLSGGQQQRVAIARALANNPPIILADQPTGALDS 178
Query: 1007 ASENLIQEALDKLME--GRTTIMVAHRLSTIRNADKIAVLQQGKVAEIG 1053
+ I + L KL E G+T ++V H ++ R ++I L+ G+V
Sbjct: 179 KTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVEREE 227
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 181 bits (460), Expect = 2e-52
Identities = 67/230 (29%), Positives = 114/230 (49%), Gaps = 14/230 (6%)
Query: 206 IEFSEVCFAYPS--RPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGK 263
I+ V Y +N+N ++ G+ + +GPSGSGKST+++++ L +PT G+
Sbjct: 2 IKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGE 61
Query: 264 ILLDGHDLKSL----QLKWLREQMGLVSQEPALFAT-SIANNILLGKEDASMDRVI--EA 316
+ +D L K R+++G V Q+ L + N+ L + E
Sbjct: 62 VYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEER 121
Query: 317 AKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDA 376
K A + L + + QLSGGQ+QR+AIARA+ NP I+L D+ T ALD+
Sbjct: 122 RKRALECLKMAELEERFANHK---PNQLSGGQQQRVAIARALANNPPIILADQPTGALDS 178
Query: 377 ESELIVQRALEKI--MSNRTTIVVAHRLSTVRDVDTIMVLKNGQVVESGT 424
++ + + L+K+ +T +VV H ++ R + I+ LK+G+V
Sbjct: 179 KTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVEREEK 228
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} Length = 231 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Score = 172 bits (437), Expect = 3e-49
Identities = 60/239 (25%), Positives = 110/239 (46%), Gaps = 28/239 (11%)
Query: 835 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTV 894
++L++V+ T L+ +V AG L +VG +G+GKST+++ + G++
Sbjct: 4 MQLQDVAES-------TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGKGSI 55
Query: 895 LIDGYDIRTLNLRSLRRKIGLVQQEPAL-FSTTIYENIKYGNEDASEIELMKATKAANAH 953
G + + L + Q+ F+T ++ + D + EL+ A
Sbjct: 56 QFAGQPLEAWSATKLALHRAYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGAL-- 113
Query: 954 GFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILK-------NPSILLLDEATSALDT 1006
+G QLSGG+ QRV +A +L+ +LLLDE ++LD
Sbjct: 114 --------ALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDV 165
Query: 1007 ASENLIQEALDKLM-EGRTTIMVAHRLS-TIRNADKIAVLQQGKVAEIGSHEQLLRKEN 1063
A ++ + + L L +G +M +H L+ T+R+A + +L+ GK+ G E++L N
Sbjct: 166 AQQSALDKILSALCQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVLTPPN 224
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} Length = 231 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Score = 160 bits (406), Expect = 4e-45
Identities = 52/236 (22%), Positives = 102/236 (43%), Gaps = 27/236 (11%)
Query: 206 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKIL 265
++ +V + L+ V AG+ VGP+G+GKST+++ + + G I
Sbjct: 4 MQLQDVAEST------RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGM-TSGKGSIQ 56
Query: 266 LDGHDLKSLQLKWLREQMGLVSQEPAL-FATSIANNILLGKEDASMDRVIEAAKAANAHS 324
G L++ L +SQ+ FAT + + + L + D + ++ A
Sbjct: 57 FAGQPLEAWSATKLALHRAYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGAL--- 113
Query: 325 FVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLR-------NPKILLLDEATSALDAE 377
++G QLSGG+ QR+ +A VL+ ++LLLDE ++LD
Sbjct: 114 -------ALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVA 166
Query: 378 SELIVQRALEKIM-SNRTTIVVAHRLSTVRDV-DTIMVLKNGQVVESGTHVDLISK 431
+ + + L + ++ +H L+ +LK G+++ SG ++++
Sbjct: 167 QQSALDKILSALCQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVLTP 222
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Score = 163 bits (413), Expect = 5e-46
Identities = 77/241 (31%), Positives = 119/241 (49%), Gaps = 25/241 (10%)
Query: 835 IELRNVSFKYPVRP-DITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGT 893
I+L N++ + I N++L V AG+ V+G SG+GKST+I V P G+
Sbjct: 2 IKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGS 61
Query: 894 VLIDGYDIRTLN---LRSLRRKIGLVQQEPALF-STTIYENIKYG------NEDASEIEL 943
VL+DG ++ TL+ L RR+IG++ Q L S T++ N+ +D + +
Sbjct: 62 VLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRV 121
Query: 944 MKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSA 1003
+ P LSGGQKQRVAIARA+ NP +LL DEATSA
Sbjct: 122 TELLSLVGLGDKHDSYPS-----------NLSGGQKQRVAIARALASNPKVLLCDEATSA 170
Query: 1004 LDTASENLIQEALDKL--MEGRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGSHEQLLR 1060
LD A+ I E L + G T +++ H + ++ D +AV+ G++ E + ++
Sbjct: 171 LDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVFS 230
Query: 1061 K 1061
Sbjct: 231 H 231
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Score = 155 bits (392), Expect = 4e-43
Identities = 76/235 (32%), Positives = 124/235 (52%), Gaps = 14/235 (5%)
Query: 206 IEFSEVCFAYPSRPHMV--FENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGK 263
I+ S + + + N++ V AG+ + +G SG+GKST+I V L PT G
Sbjct: 2 IKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGS 61
Query: 264 ILLDGHDLKSL---QLKWLREQMGLVSQEPALFAT-SIANNILLGKEDASMDRVIEAAKA 319
+L+DG +L +L +L R Q+G++ Q L ++ ++ N+ L E + + +
Sbjct: 62 VLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRV 121
Query: 320 ANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESE 379
S V GL D + + LSGGQKQR+AIARA+ NPK+LL DEATSALD +
Sbjct: 122 TELLSLV-GLGDKHDSYPS----NLSGGQKQRVAIARALASNPKVLLCDEATSALDPATT 176
Query: 380 LIVQRALEKI--MSNRTTIVVAHRLSTVRDV-DTIMVLKNGQVVESGTHVDLISK 431
+ L+ I T +++ H + V+ + D + V+ NG+++E T ++ S
Sbjct: 177 RSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVFSH 231
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Length = 239 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Score = 162 bits (412), Expect = 9e-46
Identities = 71/247 (28%), Positives = 118/247 (47%), Gaps = 27/247 (10%)
Query: 835 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTV 894
++L N++ ++ + T LNL + G L ++G SG GK+T + ++ +P G +
Sbjct: 7 VKLENLTKRFG---NFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRI 63
Query: 895 LIDGYDIRTLNLRSLRRKIGLVQQEPALFST-TIYENIKYG------NEDASEIELMKAT 947
D+ L R I +V Q A++ T+YENI + +D + + A
Sbjct: 64 YFGDRDVT--YLPPKDRNISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAA 121
Query: 948 KAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTA 1007
+ ++R P QLSGGQ+QRVA+ARAI+ P +LL+DE S LD
Sbjct: 122 ELLQIEELLNRYPA-----------QLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAK 170
Query: 1008 SENLIQEALDKL--MEGRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGSHEQLLRKENG 1064
++ + KL TTI V H D+IAV+ +G++ +IGS ++ + N
Sbjct: 171 LRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLRPNS 230
Query: 1065 IY-KQLI 1070
++ I
Sbjct: 231 VFVATFI 237
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Length = 239 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Score = 161 bits (408), Expect = 3e-45
Identities = 58/231 (25%), Positives = 108/231 (46%), Gaps = 13/231 (5%)
Query: 205 QIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKI 264
+++ + + + LN ++ G+ +GPSG GK+T + M+ L EPT G+I
Sbjct: 6 EVKLENLTKRFGN--FTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRI 63
Query: 265 LLDGHDLKSLQLKWLREQMGLVSQEPALFAT-SIANNILLGKEDASMDRVIEAAKAANAH 323
D+ L + +V Q A++ ++ NI + + + A
Sbjct: 64 YFGDRDVT--YLPPKDRNISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAA 121
Query: 324 SFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQ 383
+ + + QLSGGQ+QR+A+ARA++ P +LL+DE S LDA+ + ++
Sbjct: 122 ELL-QIEELLNRYPA----QLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMR 176
Query: 384 RALEKI--MSNRTTIVVAHRLSTVRDV-DTIMVLKNGQVVESGTHVDLISK 431
++K+ TTI V H + D I V+ GQ+++ G+ ++ +
Sbjct: 177 AEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLR 227
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Score = 163 bits (413), Expect = 1e-45
Identities = 68/248 (27%), Positives = 115/248 (46%), Gaps = 32/248 (12%)
Query: 835 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTV 894
+ + ++ +Y + + ++L+ AG ++++G SGSGKST + + P G +
Sbjct: 3 LHVIDLHKRYG---GHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAI 59
Query: 895 LIDGYDIRTLN-------------LRSLRRKIGLVQQEPALFST-TIYENI-----KYGN 935
+++G +I + LR LR ++ +V Q L+S T+ EN+ +
Sbjct: 60 IVNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLG 119
Query: 936 EDASEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSIL 995
+ +A K G R Y LSGGQ+QRV+IARA+ P +L
Sbjct: 120 LSKHDAR-ERALKYLAKVGIDERAQGKYPV-------HLSGGQQQRVSIARALAMEPDVL 171
Query: 996 LLDEATSALD-TASENLIQEALDKLMEGRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIG 1053
L DE TSALD +++ EG+T ++V H + R+ + + L QGK+ E G
Sbjct: 172 LFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEG 231
Query: 1054 SHEQLLRK 1061
EQ+
Sbjct: 232 DPEQVFGN 239
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Score = 156 bits (397), Expect = 2e-43
Identities = 60/244 (24%), Positives = 114/244 (46%), Gaps = 23/244 (9%)
Query: 205 QIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKI 264
++ ++ Y V + ++ AG + +G SGSGKST + + L +P+ G I
Sbjct: 2 KLHVIDLHKRYGGHE--VLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAI 59
Query: 265 LLDGHDLKSL-------------QLKWLREQMGLVSQEPALFAT-SIANNILLG-KEDAS 309
+++G ++ + QL+ LR ++ +V Q L++ ++ N++ +
Sbjct: 60 IVNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLG 119
Query: 310 MDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDE 369
+ + +A + V G+ + Q + LSGGQ+QR++IARA+ P +LL DE
Sbjct: 120 LSKHDARERALKYLAKV-GIDERAQGKY---PVHLSGGQQQRVSIARALAMEPDVLLFDE 175
Query: 370 ATSALDA-ESELIVQRALEKIMSNRTTIVVAHRLSTVRDV-DTIMVLKNGQVVESGTHVD 427
TSALD +++ + +T +VV H + R V ++ L G++ E G
Sbjct: 176 PTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGDPEQ 235
Query: 428 LISK 431
+
Sbjct: 236 VFGN 239
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Score = 145 bits (367), Expect = 3e-40
Identities = 40/217 (18%), Positives = 99/217 (45%), Gaps = 27/217 (12%)
Query: 835 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTV 894
+E+R++S Y D + E + + + G + G +G GK+T++ + + P+ G +
Sbjct: 3 LEIRDLSVGY----DKPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEI 58
Query: 895 LIDGYDIRTLNLRSLRRKIGLVQQEPALF-STTIYENIKYGNE----DASEIELMKATKA 949
+ +G I ++ KI + +E + ++ + +K ++ E+M A ++
Sbjct: 59 IYNGVPIT-----KVKGKIFFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALES 113
Query: 950 ANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASE 1009
+ + +LS G +RV +A +L N I +LD+ A+D S+
Sbjct: 114 VEVL------------DLKKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSK 161
Query: 1010 NLIQEALDKLMEGRTTIMVAHRLSTIRNADKIAVLQQ 1046
+ + +++ ++++ + ++++ R + D L +
Sbjct: 162 HKVLKSILEILKEKGIVIISSR-EELSYCDVNENLHK 197
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Score = 133 bits (336), Expect = 4e-36
Identities = 35/202 (17%), Positives = 92/202 (45%), Gaps = 25/202 (12%)
Query: 205 QIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKI 264
++E ++ Y V E + +++ G F GP+G GK+T++ + +P G+I
Sbjct: 2 KLEIRDLSVGYDKP---VLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEI 58
Query: 265 LLDGHDLKSLQLKWLREQMGLVSQEPALFA-TSIANNILLGKE----DASMDRVIEAAKA 319
+ +G + ++ ++ + +E + S+ + + + + +++A ++
Sbjct: 59 IYNGVP-----ITKVKGKIFFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALES 113
Query: 320 ANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESE 379
+ +LS G +R+ +A +L N +I +LD+ A+D +S+
Sbjct: 114 VEVLDL------------KKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSK 161
Query: 380 LIVQRALEKIMSNRTTIVVAHR 401
V +++ +I+ + ++++ R
Sbjct: 162 HKVLKSILEILKEKGIVIISSR 183
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Score = 146 bits (369), Expect = 5e-40
Identities = 58/241 (24%), Positives = 103/241 (42%), Gaps = 28/241 (11%)
Query: 835 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTV 894
+ L +V + ++T ++L+V G + ++G SG GK+T + ++ +P G +
Sbjct: 4 VRLVDVWKVFG---EVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQI 60
Query: 895 LIDGYDIRTLNLRSLRR----KIGLVQQEPALFSTTIYENIKYGNEDASEIELMKATKAA 950
I + I +V Q AL+ + ++ + +
Sbjct: 61 YIGDKLVADPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRV 120
Query: 951 NA-------HGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSA 1003
++R P +LSGGQ+QRVA+ RAI++ P + L+DE S
Sbjct: 121 REVAELLGLTELLNRKPR-----------ELSGGQRQRVALGRAIVRKPQVFLMDEPLSN 169
Query: 1004 LDTASENLIQEALDKL--MEGRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGSHEQLLR 1060
LD ++ L KL G TTI V H D+IAV+ +G + ++GS +++
Sbjct: 170 LDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEVYD 229
Query: 1061 K 1061
K
Sbjct: 230 K 230
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Score = 141 bits (356), Expect = 3e-38
Identities = 57/234 (24%), Positives = 103/234 (44%), Gaps = 15/234 (6%)
Query: 206 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKIL 265
+ +V + ++ V G+ +GPSG GK+T + M+ L EP+ G+I
Sbjct: 4 VRLVDVWKVFGEVT--AVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIY 61
Query: 266 LDGHDLKSLQLKWLRE----QMGLVSQEPALFATSIAN-NILLGKEDASMDRVIEAAKAA 320
+ + + + +V Q AL+ NI + + R +
Sbjct: 62 IGDKLVADPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVR 121
Query: 321 NAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESEL 380
+ GL + + +LSGGQ+QR+A+ RA++R P++ L+DE S LDA+ +
Sbjct: 122 EVAELL-GLTELLNRKPR----ELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRV 176
Query: 381 IVQRALEKI--MSNRTTIVVAHRLSTVRDV-DTIMVLKNGQVVESGTHVDLISK 431
++ L+K+ TTI V H + D I V+ G + + G+ ++ K
Sbjct: 177 RMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEVYDK 230
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} Length = 238 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Score = 143 bits (361), Expect = 4e-39
Identities = 51/249 (20%), Positives = 117/249 (46%), Gaps = 21/249 (8%)
Query: 833 GNIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISG 892
G + ++++ + I + ++ ++ G ++G +G+GK+T + ++ P SG
Sbjct: 1 GAVVVKDLRKRIG---KKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSG 57
Query: 893 TVLIDGYDIRTLNLRSLRRKIGLVQQEPALFST-TIYENIKYGNEDASEIELMKATKAAN 951
V + G ++ +R+ I + +E + E +++ A+ ++
Sbjct: 58 IVTVFGKNVVE-EPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAG-------FYASSSSE 109
Query: 952 AHGFISRMPE--GYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASE 1009
+ R E G + DR S G +++ IARA++ NP + +LDE TS LD +
Sbjct: 110 IEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNA 169
Query: 1010 NLIQEALDKLM-EGRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGSHEQLLRKENG--- 1064
+++ L + EG T ++ +H + + D+IA++ G + E G+ E+L +
Sbjct: 170 REVRKILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKERYKAQNI 229
Query: 1065 --IYKQLIR 1071
+++++++
Sbjct: 230 EEVFEEVVK 238
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} Length = 238 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Score = 137 bits (345), Expect = 6e-37
Identities = 51/231 (22%), Positives = 109/231 (47%), Gaps = 11/231 (4%)
Query: 204 GQIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGK 263
G + ++ + + + ++F ++ G+ F +GP+G+GK+T + ++ L +P+SG
Sbjct: 1 GAVVVKDLRKRIGKKE--ILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGI 58
Query: 264 ILLDGHDLKSLQLKWLREQMGLVSQEPALFAT-SIANNILLGKEDASMDRVIEAAKAANA 322
+ + G + + +R+ + + +E + + + A
Sbjct: 59 VTVFGKN-VVEEPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERA 117
Query: 323 HSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIV 382
GL + + +V S G +++ IARA++ NP++ +LDE TS LD + V
Sbjct: 118 TEIA-GLGEKIKDRVS----TYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREV 172
Query: 383 QRALEKIMSNRTTIV-VAHRLSTVRDV-DTIMVLKNGQVVESGTHVDLISK 431
++ L++ TI+ +H + V + D I ++ NG +VE+GT +L +
Sbjct: 173 RKILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKER 223
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 254 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 142 bits (360), Expect = 1e-38
Identities = 51/239 (21%), Positives = 101/239 (42%), Gaps = 15/239 (6%)
Query: 835 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTV 894
+ N+ + + + +++ V+ G ++G +GSGKST+I+++ F G V
Sbjct: 5 LRTENIVKYFG---EFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRV 61
Query: 895 LIDGYDIRTLNLRSLRRK-IGLVQQEPALF-STTIYENIKYGNE---DASEIELMKATKA 949
+ DI L I Q P T+ EN+ G ++ L
Sbjct: 62 YFENKDITNKEPAELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWI 121
Query: 950 ANAHGFISRMPE-----GYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSAL 1004
+ + + + +LSGGQ + V I RA++ NP ++++DE + +
Sbjct: 122 PKEEEMVEKAFKILEFLKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGV 181
Query: 1005 DTASENLIQEALDKLM-EGRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGSHEQLLRK 1061
+ I + +L +G T +++ HRL + N D + V+ G++ G E+ ++
Sbjct: 182 APGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRGEEEIKN 240
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 254 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 138 bits (349), Expect = 3e-37
Identities = 51/241 (21%), Positives = 104/241 (43%), Gaps = 24/241 (9%)
Query: 206 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKIL 265
+ + + + ++ SV+ G +GP+GSGKST+I+++ + G++
Sbjct: 5 LRTENIVKYFGEFK--ALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVY 62
Query: 266 LDGHDLKSLQLKWL-REQMGLVSQEPALFAT-SIANNILLGKE-------------DASM 310
+ D+ + + L + Q P ++ N+L+G+
Sbjct: 63 FENKDITNKEPAELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIP 122
Query: 311 DRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEA 370
KA F+ L Y + G +LSGGQ + + I RA++ NPK++++DE
Sbjct: 123 KEEEMVEKAFKILEFL-KLSHLYDRKAG----ELSGGQMKLVEIGRALMTNPKMIVMDEP 177
Query: 371 TSALDAESELIVQRALEKIMS-NRTTIVVAHRLSTVRDV-DTIMVLKNGQVVESGTHVDL 428
+ + + + ++ + T +++ HRL V + D + V+ NGQ++ G +
Sbjct: 178 IAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRGEEE 237
Query: 429 I 429
I
Sbjct: 238 I 238
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 232 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Score = 142 bits (358), Expect = 1e-38
Identities = 67/237 (28%), Positives = 113/237 (47%), Gaps = 26/237 (10%)
Query: 835 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTV 894
++L+NV+ + ++ + +++NL + G + VG SG GKST++ ++ SG +
Sbjct: 1 VQLQNVTKAWG---EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDL 57
Query: 895 LIDGYDIRTLNLRSLRRKIGLVQQEPALF-STTIYENIKYG------NEDASEIELMKAT 947
I + + R +G+V Q AL+ ++ EN+ +G ++ + +
Sbjct: 58 FIGEKRMN--DTPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVA 115
Query: 948 KAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTA 1007
+ + R P+ LSGGQ+QRVAI R ++ PS+ LLDE S LD A
Sbjct: 116 EVLQLAHLLDRKPK-----------ALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAA 164
Query: 1008 SENLIQEALDKL--MEGRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGSHEQLLRK 1061
++ + +L GRT I V H ADKI VL G+VA++G +L
Sbjct: 165 LRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHY 221
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 232 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Score = 134 bits (339), Expect = 4e-36
Identities = 63/230 (27%), Positives = 106/230 (46%), Gaps = 13/230 (5%)
Query: 206 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKIL 265
++ V A+ V +++N + G+ FVGPSG GKST++ M+ L TSG +
Sbjct: 1 VQLQNVTKAWGEVV--VSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLF 58
Query: 266 LDGHDLKSLQLKWLREQMGLVSQEPALF-ATSIANNILLGKEDASMDRVIEAAKAANAHS 324
+ + +G+V Q AL+ S+A N+ G + A + + +
Sbjct: 59 IGEKRMN--DTPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAE 116
Query: 325 FVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQR 384
++ L + LSGGQ+QR+AI R ++ P + LLDE S LDA + ++
Sbjct: 117 VLQ-LAHLLDRKPK----ALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRI 171
Query: 385 ALEKI--MSNRTTIVVAHRLSTVRDV-DTIMVLKNGQVVESGTHVDLISK 431
+ ++ RT I V H + D I+VL G+V + G ++L
Sbjct: 172 EISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHY 221
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Score = 138 bits (349), Expect = 3e-37
Identities = 58/232 (25%), Positives = 108/232 (46%), Gaps = 12/232 (5%)
Query: 835 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTV 894
+E++++ Y I + ++LKV G+ + ++G +G+GK+T +S + G +
Sbjct: 7 LEVQSLHVYYG---AIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKI 63
Query: 895 LIDGYDIRTLNLRSLR-RKIGLVQQEPALFST-TIYENIKYGNEDASEIELMKATKAANA 952
+ +G DI + I LV + +F T+YEN+ G + + E +K
Sbjct: 64 IFNGQDITNKPAHVINRMGIALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEW-- 121
Query: 953 HGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLI 1012
I + + + G LSGG++Q +AI RA++ P +L++DE + L + +
Sbjct: 122 ---IFSLFPRLKERLKQLGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEV 178
Query: 1013 QEALDKLM-EGRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGSHEQLLRKE 1062
E + K+ EG T ++V A VL+ G++ G +LL E
Sbjct: 179 FEVIQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIVLEGKASELLDNE 230
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Score = 134 bits (339), Expect = 5e-36
Identities = 53/228 (23%), Positives = 94/228 (41%), Gaps = 9/228 (3%)
Query: 206 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKIL 265
+E + Y + + ++ V G+ +G +G+GK+T +S + L GKI+
Sbjct: 7 LEVQSLHVYYGAIH--AIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKII 64
Query: 266 LDGHDLKSL-QLKWLREQMGLVSQEPALFATSIANNILLGKEDASMDRVIEAAKAANAHS 324
+G D+ + R + LV + +F L+ D+ S
Sbjct: 65 FNGQDITNKPAHVINRMGIALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWIFS 124
Query: 325 FVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQR 384
L + + G LSGG++Q +AI RA++ PK+L++DE + L V
Sbjct: 125 LFPRLKERLKQLGG----TLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFE 180
Query: 385 ALEKIMS-NRTTIVVAHRLSTVRDV-DTIMVLKNGQVVESGTHVDLIS 430
++KI T ++V V VL+ GQ+V G +L+
Sbjct: 181 VIQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIVLEGKASELLD 228
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 133 bits (337), Expect = 8e-36
Identities = 68/221 (30%), Positives = 110/221 (49%), Gaps = 14/221 (6%)
Query: 855 NLNLKVSAGRS-LAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRKI 913
LN+ GR ++G +G+GKS + L+ P G V ++G DI L RR I
Sbjct: 15 RLNVDFEMGRDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADIT--PLPPERRGI 72
Query: 914 GLVQQEPALFST-TIYENIKYGNEDASEIELMKATKAANAHGFISRMPEGYQSHVGDRGV 972
G V Q+ ALF ++Y NI YG + +E + + G + +
Sbjct: 73 GFVPQDYALFPHLSVYRNIAYGLRNVERVERDRRVREMAEK-------LGIAHLLDRKPA 125
Query: 973 QLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKL--MEGRTTIMVAH 1030
+LSGG++QRVA+ARA++ P +LLLDE SA+D ++ ++ E L + + V H
Sbjct: 126 RLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTH 185
Query: 1031 RLSTIRN-ADKIAVLQQGKVAEIGSHEQLLRKENGIYKQLI 1070
L AD++AV+ G++ E G ++L +NG + +
Sbjct: 186 DLIEAAMLADEVAVMLNGRIVEKGKLKELFSAKNGEVAEFL 226
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 130 bits (328), Expect = 1e-34
Identities = 61/218 (27%), Positives = 105/218 (48%), Gaps = 14/218 (6%)
Query: 225 NLNFSVDAGK-TFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQM 283
LN + G+ +GP+G+GKS + ++ + +P G++ L+G D+ L R +
Sbjct: 15 RLNVDFEMGRDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADIT--PLPPERRGI 72
Query: 284 GLVSQEPALFAT-SIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGT 342
G V Q+ ALF S+ NI G + + + L D
Sbjct: 73 GFVPQDYALFPHLSVYRNIAYGLRNVERVERDRRVREMAEKLGIAHLLDRK-------PA 125
Query: 343 QLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKI--MSNRTTIVVAH 400
+LSGG++QR+A+ARA++ P++LLLDE SA+D +++ ++ L + + + V H
Sbjct: 126 RLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTH 185
Query: 401 RLSTVRDV-DTIMVLKNGQVVESGTHVDLISKGGEYAA 437
L + D + V+ NG++VE G +L S A
Sbjct: 186 DLIEAAMLADEVAVMLNGRIVEKGKLKELFSAKNGEVA 223
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Score = 132 bits (332), Expect = 4e-35
Identities = 67/244 (27%), Positives = 119/244 (48%), Gaps = 14/244 (5%)
Query: 835 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTV 894
I ++NVS + + + +N+N+ + G ++G SG+GK+T + ++ P +G +
Sbjct: 4 IIVKNVSKVFK-KGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGEL 62
Query: 895 LIDGYDIRTLN---LRSLRRKIGLVQQEPALFST-TIYENIKYGNEDASEIELMKATKAA 950
D + + + RKIG+V Q AL+ T +ENI + + + +
Sbjct: 63 YFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVE 122
Query: 951 NAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASEN 1010
+ + +LSG Q+QRVA+ARA++K+PS+LLLDE S LD +
Sbjct: 123 EVAKIL-----DIHHVLNHFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRD 177
Query: 1011 LIQEALDKL--MEGRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGSHEQLLRKENGIY- 1066
+ + ++ G T ++V+H + I AD++ VL +GK+ ++G E L I
Sbjct: 178 SARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDLYDNPVSIQV 237
Query: 1067 KQLI 1070
LI
Sbjct: 238 ASLI 241
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Score = 127 bits (320), Expect = 1e-33
Identities = 58/234 (24%), Positives = 112/234 (47%), Gaps = 12/234 (5%)
Query: 205 QIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKI 264
+I V + + +N+N +++ G+ F +GPSG+GK+T + ++ L P++G++
Sbjct: 3 RIIVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGEL 62
Query: 265 LLDGHDLKSLQLKWLRE---QMGLVSQEPALFAT-SIANNILLGKEDASMDRVIEAAKAA 320
D + S + ++G+V Q AL+ + NI + M + +
Sbjct: 63 YFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVE 122
Query: 321 NAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESEL 380
+ + +LSG Q+QR+A+ARA++++P +LLLDE S LDA
Sbjct: 123 EVAKIL-DIHHVLNHFPR----ELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRD 177
Query: 381 IVQRALEKI--MSNRTTIVVAHRLSTVRDV-DTIMVLKNGQVVESGTHVDLISK 431
+ ++++ T +VV+H + + + D + VL G++V+ G DL
Sbjct: 178 SARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDLYDN 231
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} Length = 229 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Score = 129 bits (326), Expect = 2e-34
Identities = 71/231 (30%), Positives = 120/231 (51%), Gaps = 18/231 (7%)
Query: 835 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTV 894
IE+ ++S K+ +NL+LKV +G ++G +G+GK+ + L+ F+ P SG +
Sbjct: 2 IEIESLSRKWKN----FSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRI 57
Query: 895 LIDGYDIRTLNLRSLRRKIGLVQQEPALF-STTIYENIKYGNEDASEIELMKATKAANAH 953
L+DG D+ +L + I V Q +LF + +N+++G + + A
Sbjct: 58 LLDGKDVT--DLSPEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDL 115
Query: 954 GFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQ 1013
+ + + LSGG++QRVA+ARA++ NP ILLLDE SALD ++ +
Sbjct: 116 KI--------EHLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAR 167
Query: 1014 EALDKL--MEGRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGSHEQLLRK 1061
E L L T + + H + R AD+IAV+ GK+ ++G E++ K
Sbjct: 168 EMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEIFEK 218
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} Length = 229 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Score = 123 bits (310), Expect = 3e-32
Identities = 64/234 (27%), Positives = 117/234 (50%), Gaps = 25/234 (10%)
Query: 206 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKIL 265
IE + + + +NL+ V++G+ F +GP+G+GK+ + ++ + P SG+IL
Sbjct: 2 IEIESLSRKWKNF---SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRIL 58
Query: 266 LDGHDLKSLQLKWLREQMGLVSQEPALF-----ATSIANNILLGKEDASMDRVIEAAKAA 320
LDG D+ L + + V Q +LF ++ + + K RV++ A+
Sbjct: 59 LDGKDVTDLS--PEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKKIKDP-KRVLDTARDL 115
Query: 321 NAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESEL 380
++ P LSGG++QR+A+ARA++ NPKILLLDE SALD ++
Sbjct: 116 KIEHLLDRNPL-----------TLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQE 164
Query: 381 IVQRALEKI--MSNRTTIVVAHRLSTVRDV-DTIMVLKNGQVVESGTHVDLISK 431
+ L + + T + + H + R + D I V+ +G++++ G ++ K
Sbjct: 165 NAREMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEIFEK 218
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} Length = 178 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Score = 103 bits (256), Expect = 7e-26
Identities = 19/198 (9%), Positives = 47/198 (23%), Gaps = 31/198 (15%)
Query: 866 LAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRKIGLVQQEPALFST 925
+ + G+ G GK+T++ ++ + + R+ R I ++ S
Sbjct: 3 IIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTGFRIITTEGKKKIFSSK 62
Query: 926 TIYENIKYGNEDASEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIA 985
G+ V + + A
Sbjct: 63 FFTSKKLVGSY-----------------------------GVNVQYFEELAIPILERAYR 93
Query: 986 RAILKNPSILLLDEATSALDTASENLIQEALDKLMEGRTTIMVAHRLSTIRNADKIAVLQ 1045
A ++++DE + + + +I L
Sbjct: 94 EAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHDPNVNVVATIPIRDVHPLVKEIRRLP 153
Query: 1046 QGKVAEIGSH--EQLLRK 1061
+ E+ + +L
Sbjct: 154 GAVLIELTPENRDVILED 171
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} Length = 178 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Score = 99.3 bits (246), Expect = 2e-24
Identities = 18/189 (9%), Positives = 41/189 (21%), Gaps = 29/189 (15%)
Query: 237 AFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGLVSQEPALFATS 296
G G GK+T++ + + + + + + ++ +
Sbjct: 4 IITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTGFRIITTEGKKKIFSSKF 63
Query: 297 IANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIAR 356
+ L+G V + A
Sbjct: 64 FTSKKLVG-----------------------------SYGVNVQYFEELAIPILERAYRE 94
Query: 357 AVLRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRDVDTIMVLKN 416
A K++++DE + N + V I L
Sbjct: 95 AKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHDPNVNVVATIPIRDVHPLVKEIRRLPG 154
Query: 417 GQVVESGTH 425
++E
Sbjct: 155 AVLIELTPE 163
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} Length = 189 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Score = 51.9 bits (123), Expect = 6e-08
Identities = 19/148 (12%), Positives = 42/148 (28%), Gaps = 5/148 (3%)
Query: 239 VGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGLVSQEPALFATSIA 298
GP G GK+T+I + + + + + + + + +S +
Sbjct: 7 TGPPGVGKTTLIHKASEVLKSSGVPVDGFYTEEVRQGGRRIGFDVVTLSGTRGPLSRVGL 66
Query: 299 NNILLGKEDASMDRVIEAAKAANAHSFV-----EGLPDGYQTQVGEGGTQLSGGQKQRIA 353
+E V++ V G + V + ++ + I
Sbjct: 67 EPPPGKRECRVGQYVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQLFIQ 126
Query: 354 IARAVLRNPKILLLDEATSALDAESELI 381
R L P ++L L+
Sbjct: 127 AVRQTLSTPGTIILGTIPVPKGKPLALV 154
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} Length = 189 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Score = 48.1 bits (113), Expect = 9e-07
Identities = 21/153 (13%), Positives = 40/153 (26%), Gaps = 5/153 (3%)
Query: 864 RSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRKIGLVQQEPALF 923
R + + G G GK+T+I V + R + + +
Sbjct: 2 RHVFLTGPPGVGKTTLIHKASEVLKSSGVPVDGFYTEEVRQGGRRIGFDVVTLSGTRGPL 61
Query: 924 STTIYENIKYGNEDASEIELMKATKAANAHGFISRM-----PEGYQSHVGDRGVQLSGGQ 978
S E E ++ T + R G + V D ++
Sbjct: 62 SRVGLEPPPGKRECRVGQYVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFS 121
Query: 979 KQRVAIARAILKNPSILLLDEATSALDTASENL 1011
+ + R L P ++L +
Sbjct: 122 QLFIQAVRQTLSTPGTIILGTIPVPKGKPLALV 154
|
| >d2hyda2 f.37.1.1 (A:1-323) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 323 | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: ABC transporter transmembrane region superfamily: ABC transporter transmembrane region family: ABC transporter transmembrane region domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Score = 46.0 bits (107), Expect = 1e-05
Identities = 38/314 (12%), Positives = 95/314 (30%), Gaps = 2/314 (0%)
Query: 501 LLKLNAAEWPYAVLGSVGAILAGMEAPLFALGITHILTAFYSPHDSQIKRVVDQVALIFV 560
L+ + I+ L L I + + + H V + +
Sbjct: 5 YLQFVKPYKYRIFATIIVGIIKFGIPMLIPLLIKYAIDGVINNHALTTDEKVHHLTIAIG 64
Query: 561 GLAVVTIPVYLLQHYFYTLMGEHLTARVRLSMFSAILSNEIGWFDL--DENNTGLLISTL 618
+ + V + + + + ++ + + ++ N G +IS +
Sbjct: 65 IALFIFVIVRPPIEFIRQYLAQWTSNKILYDIRKKLYNHLQALSARFYANNQVGQVISRV 124
Query: 619 AADATLVRSALADRLSIIVQNVALTVTAFVIAFILSWRLAAVVAASLPLLIGAFVAEQLF 678
D + + L I + + A I F L +L P I
Sbjct: 125 INDVEQTKDFILTGLMNIWLDCITIIIALSIMFFLDVKLTLAALFIFPFYILTVYVFFGR 184
Query: 679 LKGFGGDYNRAYSRATSVAREAIANIRTVAAYGIEKRISIQFASELSQPNKQALLRGHIS 738
L+ + ++A + E + I V ++ IE + F + + +AL +
Sbjct: 185 LRKLTRERSQALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDKKNTNFLTRALKHTRWN 244
Query: 739 GFGYGVSQLLSLCSYALGLWYASVLIKQKGSNFGDIMKSFMVLIITALAVAETLALAPDI 798
+ + ++ + + + L G + L + + +A +
Sbjct: 245 AYSFAAINTVTDIGPIIVIGVGAYLAISGSITVGTLAAFVGYLELLFGPLRRLVASFTTL 304
Query: 799 VKGSQALGPVFGIL 812
+ ++ VF ++
Sbjct: 305 TQSFASMDRVFQLI 318
|
| >d3b60a2 f.37.1.1 (A:10-328) Multidrug resistance ABC transporter MsbA, N-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 319 | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: ABC transporter transmembrane region superfamily: ABC transporter transmembrane region family: ABC transporter transmembrane region domain: Multidrug resistance ABC transporter MsbA, N-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Score = 45.7 bits (106), Expect = 2e-05
Identities = 51/318 (16%), Positives = 116/318 (36%), Gaps = 5/318 (1%)
Query: 498 IWELLKLNAAEWPYAVLGSVGAILAGMEAPLFALGITHILTAFYSPHDSQIKRVVDQVAL 557
L A ++ + IL + +L + D + + + L
Sbjct: 4 FRRLWPTIAPFKAGLIVAGIALILNAASDTFMLSLLKPLLDDGFGKTDRSV---LLWMPL 60
Query: 558 IFVGLAVVTIPVYLLQHYFYTLMGEHLTARVRLSMFSAILSNEIGWFDLDENNTGLLIST 617
+ +GL ++ + Y + + + +R +F ++ + +FD T +S
Sbjct: 61 VVIGLMILRGITSYISSYCISWVSGKVVMTMRRRLFGHMMGMPVAFFDKQSTGTL--LSR 118
Query: 618 LAADATLVRSALADRLSIIVQNVALTVTAFVIAFILSWRLAAVVAASLPLLIGAFVAEQL 677
+ D+ V S+ + L +V+ A + F++ F SW+L+ ++ P++ A
Sbjct: 119 ITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQLSIILVVLAPIVSIAIRVVSK 178
Query: 678 FLKGFGGDYNRAYSRATSVAREAIANIRTVAAYGIEKRISIQFASELSQPNKQALLRGHI 737
+ + + T+ A + + + V +G ++ + +F ++ Q +
Sbjct: 179 RFRSISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKMRLQGMKMVSA 238
Query: 738 SGFGYGVSQLLSLCSYALGLWYASVLIKQKGSNFGDIMKSFMVLIITALAVAETLALAPD 797
S + QL++ + A L+ AS G I F +I + +
Sbjct: 239 SSISDPIIQLIASLALAFVLYAASFPSVMDSLTAGTITVVFSSMIALMRPLKSLTNVNAQ 298
Query: 798 IVKGSQALGPVFGILYRK 815
+G A +F IL +
Sbjct: 299 FQRGMAACQTLFAILDSE 316
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 427 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 42.0 bits (97), Expect = 3e-04
Identities = 15/72 (20%), Positives = 30/72 (41%), Gaps = 5/72 (6%)
Query: 975 SGGQKQRVAI----ARAILKNPSILLLDEATSALDTASENLIQEALDKLMEGRT-TIMVA 1029
SGG+K A+ A + +LDE +ALD + I + + I+++
Sbjct: 334 SGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVIS 393
Query: 1030 HRLSTIRNADKI 1041
+ + +D +
Sbjct: 394 LKNTMFEKSDAL 405
|
| >d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} Length = 182 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 37.3 bits (85), Expect = 0.004
Identities = 8/27 (29%), Positives = 13/27 (48%)
Query: 233 GKTFAFVGPSGSGKSTIISMVQRLYEP 259
G+ GPS GKST++ ++
Sbjct: 2 GRVVVLSGPSAVGKSTVVRCLRERIPN 28
|
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 1082 | |||
| d2hyda1 | 255 | Putative multidrug export ATP-binding/permease pro | 100.0 | |
| d2pmka1 | 241 | Haemolysin B ATP-binding protein {Escherichia coli | 100.0 | |
| d3b60a1 | 253 | Multidrug resistance ABC transporter MsbA, C-termi | 100.0 | |
| d1jj7a_ | 251 | Peptide transporter Tap1, C-terminal ABC domain {H | 100.0 | |
| d1mv5a_ | 242 | Multidrug resistance ABC transporter LmrA, C-termi | 100.0 | |
| d2hyda1 | 255 | Putative multidrug export ATP-binding/permease pro | 100.0 | |
| d2pmka1 | 241 | Haemolysin B ATP-binding protein {Escherichia coli | 100.0 | |
| d3b60a1 | 253 | Multidrug resistance ABC transporter MsbA, C-termi | 100.0 | |
| d1jj7a_ | 251 | Peptide transporter Tap1, C-terminal ABC domain {H | 100.0 | |
| d1mv5a_ | 242 | Multidrug resistance ABC transporter LmrA, C-termi | 100.0 | |
| d1r0wa_ | 281 | Cystic fibrosis transmembrane conductance regulato | 100.0 | |
| d1v43a3 | 239 | Hypothetical protein PH0022, N-terminal domain {Py | 100.0 | |
| d2awna2 | 232 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d3d31a2 | 229 | Sulfate/molybdate ABC transporter, ATP-binding pro | 100.0 | |
| d1g2912 | 240 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d1oxxk2 | 242 | Glucose transport protein GlcV, N-terminal domain | 100.0 | |
| d3dhwc1 | 240 | Methionine import ATP-binding protein MetN {Escher | 100.0 | |
| d1r0wa_ | 281 | Cystic fibrosis transmembrane conductance regulato | 100.0 | |
| d1b0ua_ | 258 | ATP-binding subunit of the histidine permease {Sal | 100.0 | |
| d1l2ta_ | 230 | MJ0796 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d1ji0a_ | 240 | Branched chain aminoacid ABC transporter {Thermoto | 100.0 | |
| d1g6ha_ | 254 | MJ1267 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d1vpla_ | 238 | Putative ABC transporter TM0544 {Thermotoga mariti | 100.0 | |
| d1v43a3 | 239 | Hypothetical protein PH0022, N-terminal domain {Py | 100.0 | |
| d1oxxk2 | 242 | Glucose transport protein GlcV, N-terminal domain | 100.0 | |
| d3d31a2 | 229 | Sulfate/molybdate ABC transporter, ATP-binding pro | 100.0 | |
| d2awna2 | 232 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d3dhwc1 | 240 | Methionine import ATP-binding protein MetN {Escher | 100.0 | |
| d1l2ta_ | 230 | MJ0796 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d2onka1 | 240 | Molybdate/tungstate import ATP-binding protein Wtp | 100.0 | |
| d1g2912 | 240 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d1b0ua_ | 258 | ATP-binding subunit of the histidine permease {Sal | 100.0 | |
| d1g6ha_ | 254 | MJ1267 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d1ji0a_ | 240 | Branched chain aminoacid ABC transporter {Thermoto | 100.0 | |
| d1vpla_ | 238 | Putative ABC transporter TM0544 {Thermotoga mariti | 100.0 | |
| d2onka1 | 240 | Molybdate/tungstate import ATP-binding protein Wtp | 100.0 | |
| d1l7vc_ | 231 | ABC transporter involved in vitamin B12 uptake, Bt | 100.0 | |
| d1l7vc_ | 231 | ABC transporter involved in vitamin B12 uptake, Bt | 100.0 | |
| d1sgwa_ | 200 | Putative ABC transporter PF0895 {Pyrococcus furios | 100.0 | |
| d1sgwa_ | 200 | Putative ABC transporter PF0895 {Pyrococcus furios | 99.97 | |
| d3b60a2 | 319 | Multidrug resistance ABC transporter MsbA, N-termi | 99.93 | |
| d2hyda2 | 323 | Putative multidrug export ATP-binding/permease pro | 99.93 | |
| g1f2t.1 | 292 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.7 | |
| d3b60a2 | 319 | Multidrug resistance ABC transporter MsbA, N-termi | 99.65 | |
| d2hyda2 | 323 | Putative multidrug export ATP-binding/permease pro | 99.65 | |
| g1f2t.1 | 292 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.64 | |
| d1ye8a1 | 178 | Hypothetical kinase-like protein Aq_1292 {Aquifex | 99.45 | |
| g1ii8.1 | 369 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.36 | |
| d1ye8a1 | 178 | Hypothetical kinase-like protein Aq_1292 {Aquifex | 99.22 | |
| d1w1wa_ | 427 | Smc head domain {Baker's yeast (Saccharomyces cere | 99.18 | |
| d1w1wa_ | 427 | Smc head domain {Baker's yeast (Saccharomyces cere | 99.17 | |
| d1e69a_ | 308 | Smc head domain {Thermotoga maritima [TaxId: 2336] | 99.04 | |
| d1e69a_ | 308 | Smc head domain {Thermotoga maritima [TaxId: 2336] | 98.99 | |
| g1xew.1 | 329 | Smc head domain {Pyrococcus furiosus [TaxId: 2261] | 98.71 | |
| g1ii8.1 | 369 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 98.65 | |
| g1xew.1 | 329 | Smc head domain {Pyrococcus furiosus [TaxId: 2261] | 98.51 | |
| d1cr2a_ | 277 | Gene 4 protein (g4p, DNA primase), helicase domain | 97.04 | |
| d1ewqa2 | 224 | DNA repair protein MutS, the C-terminal domain {Th | 96.7 | |
| d1wb9a2 | 234 | DNA repair protein MutS, the C-terminal domain {Es | 96.58 | |
| d1cr2a_ | 277 | Gene 4 protein (g4p, DNA primase), helicase domain | 96.58 | |
| d1nlfa_ | 274 | Hexameric replicative helicase repA {Escherichia c | 96.21 | |
| d2i3ba1 | 189 | Cancer-related NTPase, C1orf57 {Human (Homo sapien | 95.87 | |
| d1ewqa2 | 224 | DNA repair protein MutS, the C-terminal domain {Th | 95.82 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 95.66 | |
| d1g6oa_ | 323 | Hexameric traffic ATPase, HP0525 {Helicobacter pyl | 95.64 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 95.62 | |
| d1lv7a_ | 256 | AAA domain of cell division protein FtsH {Escheric | 95.54 | |
| d1r7ra3 | 265 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 95.53 | |
| d1znwa1 | 182 | Guanylate kinase {Mycobacterium tuberculosis [TaxI | 95.4 | |
| d1nlfa_ | 274 | Hexameric replicative helicase repA {Escherichia c | 95.16 | |
| d1znwa1 | 182 | Guanylate kinase {Mycobacterium tuberculosis [TaxI | 95.11 | |
| d1tf7a2 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 95.11 | |
| d1ly1a_ | 152 | Polynucleotide kinase, kinase domain {Bacteriophag | 95.02 | |
| d1yj5a2 | 172 | 5' polynucleotide kinase-3' phosphatase, C-termina | 94.86 | |
| d1tf7a2 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 94.78 | |
| d1s96a_ | 205 | Guanylate kinase {Escherichia coli [TaxId: 562]} | 94.67 | |
| d1m8pa3 | 183 | ATP sulfurylase C-terminal domain {Fungus (Penicil | 94.65 | |
| d1zp6a1 | 176 | Hypothetical protein Atu3015 {Agrobacterium tumefa | 94.61 | |
| d1sxje2 | 252 | Replication factor C5 {Baker's yeast (Saccharomyce | 94.43 | |
| d1t9ha2 | 231 | Probable GTPase EngC (YjeQ), C-terminal domain {Ba | 94.39 | |
| d1ly1a_ | 152 | Polynucleotide kinase, kinase domain {Bacteriophag | 94.38 | |
| d1zp6a1 | 176 | Hypothetical protein Atu3015 {Agrobacterium tumefa | 94.28 | |
| d1p9ra_ | 401 | Extracellular secretion NTPase EpsE {Vibrio choler | 94.26 | |
| d1t9ha2 | 231 | Probable GTPase EngC (YjeQ), C-terminal domain {Ba | 94.2 | |
| d1s96a_ | 205 | Guanylate kinase {Escherichia coli [TaxId: 562]} | 94.16 | |
| d1y63a_ | 174 | Probable kinase LmjF30.1890 {Leishmania major [Tax | 94.12 | |
| d1r7ra3 | 265 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 94.1 | |
| d1rz3a_ | 198 | Hypothetical protein rbstp0775 {Bacillus stearothe | 94.06 | |
| d1np6a_ | 170 | Molybdopterin-guanine dinucleotide biosynthesis pr | 94.04 | |
| d1mkya2 | 186 | Probable GTPase Der, N-terminal and middle domains | 93.99 | |
| d1lv7a_ | 256 | AAA domain of cell division protein FtsH {Escheric | 93.97 | |
| d1np6a_ | 170 | Molybdopterin-guanine dinucleotide biosynthesis pr | 93.8 | |
| d1wb9a2 | 234 | DNA repair protein MutS, the C-terminal domain {Es | 93.69 | |
| d1qhxa_ | 178 | Chloramphenicol phosphotransferase {Streptomyces v | 93.66 | |
| d1g6oa_ | 323 | Hexameric traffic ATPase, HP0525 {Helicobacter pyl | 93.61 | |
| d1sq5a_ | 308 | Pantothenate kinase PanK {Escherichia coli [TaxId: | 93.55 | |
| d1uj2a_ | 213 | Uridine-cytidine kinase 2 {Human (Homo sapiens) [T | 93.53 | |
| d1lw7a2 | 192 | Transcriptional regulator NadR, ribosylnicotinamid | 93.37 | |
| d1svia_ | 195 | Probable GTPase EngB {Bacillus subtilis [TaxId: 14 | 93.35 | |
| d1sq5a_ | 308 | Pantothenate kinase PanK {Escherichia coli [TaxId: | 93.35 | |
| d2i3ba1 | 189 | Cancer-related NTPase, C1orf57 {Human (Homo sapien | 93.34 | |
| d1xjca_ | 165 | Molybdopterin-guanine dinucleotide biosynthesis pr | 93.34 | |
| d1m8pa3 | 183 | ATP sulfurylase C-terminal domain {Fungus (Penicil | 93.23 | |
| d1knqa_ | 171 | Gluconate kinase {Escherichia coli [TaxId: 562]} | 93.22 | |
| d1rz3a_ | 198 | Hypothetical protein rbstp0775 {Bacillus stearothe | 93.18 | |
| d1qhxa_ | 178 | Chloramphenicol phosphotransferase {Streptomyces v | 93.17 | |
| d1x6va3 | 195 | Adenosine-5'phosphosulfate kinase (APS kinase) {Hu | 93.1 | |
| d1m7ga_ | 208 | Adenosine-5'phosphosulfate kinase (APS kinase) {Fu | 93.09 | |
| d1y63a_ | 174 | Probable kinase LmjF30.1890 {Leishmania major [Tax | 92.94 | |
| d1lw7a2 | 192 | Transcriptional regulator NadR, ribosylnicotinamid | 92.89 | |
| d1knqa_ | 171 | Gluconate kinase {Escherichia coli [TaxId: 562]} | 92.85 | |
| d1tq4a_ | 400 | Interferon-inducible GTPase {Mouse (Mus musculus) | 92.7 | |
| d1sxje2 | 252 | Replication factor C5 {Baker's yeast (Saccharomyce | 92.65 | |
| d1xjca_ | 165 | Molybdopterin-guanine dinucleotide biosynthesis pr | 92.64 | |
| d1h65a_ | 257 | Chloroplast protein translocon GTPase Toc34 {Garde | 92.53 | |
| d1uj2a_ | 213 | Uridine-cytidine kinase 2 {Human (Homo sapiens) [T | 92.44 | |
| d2bdta1 | 176 | Hypothetical protein BH3686 {Bacillus halodurans [ | 92.42 | |
| d1khta_ | 190 | Adenylate kinase {Archaeon Methanococcus voltae [T | 92.4 | |
| d1ak2a1 | 190 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 92.36 | |
| d1khta_ | 190 | Adenylate kinase {Archaeon Methanococcus voltae [T | 92.35 | |
| d1kgda_ | 178 | Guanylate kinase-like domain of Cask {Human (Homo | 92.34 | |
| d1rkba_ | 173 | Adenylate kinase {Human (Homo sapiens), isoenzyme | 92.28 | |
| d1kgda_ | 178 | Guanylate kinase-like domain of Cask {Human (Homo | 92.23 | |
| d1yj5a2 | 172 | 5' polynucleotide kinase-3' phosphatase, C-termina | 92.17 | |
| d2bdta1 | 176 | Hypothetical protein BH3686 {Bacillus halodurans [ | 92.1 | |
| d1kaga_ | 169 | Shikimate kinase (AroK) {Escherichia coli [TaxId: | 91.95 | |
| d1mkya2 | 186 | Probable GTPase Der, N-terminal and middle domains | 91.95 | |
| d1x6va3 | 195 | Adenosine-5'phosphosulfate kinase (APS kinase) {Hu | 91.79 | |
| d1qf9a_ | 194 | UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4 | 91.77 | |
| d1gkya_ | 186 | Guanylate kinase {Baker's yeast (Saccharomyces cer | 91.75 | |
| d2cxxa1 | 184 | GTP-binding protein engB {Pyrococcus horikoshii [T | 91.7 | |
| d1p5zb_ | 241 | Deoxycytidine kinase {Human (Homo sapiens) [TaxId: | 91.44 | |
| d1kaga_ | 169 | Shikimate kinase (AroK) {Escherichia coli [TaxId: | 91.37 | |
| d2gj8a1 | 161 | Probable tRNA modification GTPase TrmE (MnmE), G d | 91.37 | |
| d1lnza2 | 185 | Obg GTP-binding protein middle domain {Bacillus su | 91.37 | |
| d1gkya_ | 186 | Guanylate kinase {Baker's yeast (Saccharomyces cer | 91.32 | |
| d1mkya1 | 171 | Probable GTPase Der, N-terminal and middle domains | 91.32 | |
| d1wf3a1 | 178 | GTPase Era, N-terminal domain {Thermus thermophilu | 91.27 | |
| d2dy1a2 | 267 | Elongation factor G (EF-G), N-terminal (G) domain | 91.19 | |
| d1rkba_ | 173 | Adenylate kinase {Human (Homo sapiens), isoenzyme | 91.16 | |
| d1uf9a_ | 191 | Dephospho-CoA kinase {Thermus thermophilus [TaxId: | 91.11 | |
| d1yrba1 | 244 | ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss | 91.1 | |
| d1q3ta_ | 223 | CMP kinase {Streptococcus pneumoniae [TaxId: 1313] | 91.01 | |
| d1sxjc2 | 227 | Replication factor C3 {Baker's yeast (Saccharomyce | 90.99 | |
| d1ukza_ | 196 | Uridylate kinase {Baker's yeast (Saccharomyces cer | 90.99 | |
| d1lvga_ | 190 | Guanylate kinase {Mouse (Mus musculus) [TaxId: 100 | 90.97 | |
| d1yrba1 | 244 | ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss | 90.97 | |
| d1qf9a_ | 194 | UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4 | 90.96 | |
| d1qhla_ | 222 | Cell division protein MukB {Escherichia coli [TaxI | 90.94 | |
| d1egaa1 | 179 | GTPase Era, N-terminal domain {Escherichia coli [T | 90.8 | |
| d1udxa2 | 180 | Obg GTP-binding protein middle domain {Thermus the | 90.7 | |
| d1n0wa_ | 242 | DNA repair protein Rad51, catalytic domain {Human | 90.69 | |
| d1svia_ | 195 | Probable GTPase EngB {Bacillus subtilis [TaxId: 14 | 90.68 | |
| d2vp4a1 | 197 | Deoxyribonucleoside kinase {Fruit fly (Drosophila | 90.64 | |
| d1ak2a1 | 190 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 90.63 | |
| d1nn5a_ | 209 | Thymidylate kinase {Human (Homo sapiens) [TaxId: 9 | 90.51 | |
| d1f6ba_ | 186 | SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: | 90.48 | |
| d1nrjb_ | 209 | Signal recognition particle receptor beta-subunit | 90.48 | |
| d1knxa2 | 177 | HPr kinase HprK C-terminal domain {Mycoplasma pneu | 90.39 | |
| d1jjva_ | 205 | Dephospho-CoA kinase {Haemophilus influenzae [TaxI | 90.37 | |
| d1bifa1 | 213 | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphata | 90.24 | |
| d1tq4a_ | 400 | Interferon-inducible GTPase {Mouse (Mus musculus) | 90.12 | |
| d1p9ra_ | 401 | Extracellular secretion NTPase EpsE {Vibrio choler | 90.03 | |
| d1lvga_ | 190 | Guanylate kinase {Mouse (Mus musculus) [TaxId: 100 | 90.0 | |
| d1puia_ | 188 | Probable GTPase EngB {Escherichia coli [TaxId: 562 | 89.97 | |
| d3adka_ | 194 | Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | 89.96 | |
| d1viaa_ | 161 | Shikimate kinase (AroK) {Campylobacter jejuni [Tax | 89.95 | |
| d1e6ca_ | 170 | Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax | 89.7 | |
| d1p5zb_ | 241 | Deoxycytidine kinase {Human (Homo sapiens) [TaxId: | 89.7 | |
| d1upta_ | 169 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 89.69 | |
| d1ukza_ | 196 | Uridylate kinase {Baker's yeast (Saccharomyces cer | 89.65 | |
| d1n0wa_ | 242 | DNA repair protein Rad51, catalytic domain {Human | 89.55 | |
| d1gvnb_ | 273 | Plasmid maintenance system epsilon/zeta, toxin zet | 89.5 | |
| d2qtvb1 | 166 | SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 89.5 | |
| d1okkd2 | 207 | GTPase domain of the signal recognition particle r | 89.49 | |
| d1zaka1 | 189 | Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | 89.39 | |
| d3adka_ | 194 | Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | 89.36 | |
| d1r8sa_ | 160 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 89.35 | |
| d1h65a_ | 257 | Chloroplast protein translocon GTPase Toc34 {Garde | 89.31 | |
| d1odfa_ | 286 | Hypothetical protein Ygr205W {Baker's yeast (Sacch | 89.28 | |
| d1uf9a_ | 191 | Dephospho-CoA kinase {Thermus thermophilus [TaxId: | 89.26 | |
| d1teva_ | 194 | UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606] | 89.21 | |
| d1m7ga_ | 208 | Adenosine-5'phosphosulfate kinase (APS kinase) {Fu | 89.16 | |
| d1vmaa2 | 213 | GTPase domain of the signal recognition particle r | 89.16 | |
| d1a7ja_ | 288 | Phosphoribulokinase {Rhodobacter sphaeroides [TaxI | 89.15 | |
| d2vp4a1 | 197 | Deoxyribonucleoside kinase {Fruit fly (Drosophila | 89.14 | |
| d1jjva_ | 205 | Dephospho-CoA kinase {Haemophilus influenzae [TaxI | 89.11 | |
| d1e6ca_ | 170 | Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax | 89.07 | |
| d1zina1 | 182 | Adenylate kinase {Bacillus stearothermophilus [Tax | 89.07 | |
| d2p67a1 | 327 | LAO/AO transport system kinase ArgK {Escherichia c | 89.05 | |
| d1wf3a1 | 178 | GTPase Era, N-terminal domain {Thermus thermophilu | 88.99 | |
| d4tmka_ | 210 | Thymidylate kinase {Escherichia coli [TaxId: 562]} | 88.97 | |
| d1q3ta_ | 223 | CMP kinase {Streptococcus pneumoniae [TaxId: 1313] | 88.85 | |
| d1mkya1 | 171 | Probable GTPase Der, N-terminal and middle domains | 88.85 | |
| d1ksha_ | 165 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 88.84 | |
| d2erxa1 | 171 | di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 88.84 | |
| d1tmka_ | 214 | Thymidylate kinase {Baker's yeast (Saccharomyces c | 88.82 | |
| d1wb1a4 | 179 | Elongation factor SelB, N-terminal domain {Methano | 88.79 | |
| d1nn5a_ | 209 | Thymidylate kinase {Human (Homo sapiens) [TaxId: 9 | 88.56 | |
| d1tmka_ | 214 | Thymidylate kinase {Baker's yeast (Saccharomyces c | 88.56 | |
| d2cxxa1 | 184 | GTP-binding protein engB {Pyrococcus horikoshii [T | 88.54 | |
| d1nrjb_ | 209 | Signal recognition particle receptor beta-subunit | 88.52 | |
| d1viaa_ | 161 | Shikimate kinase (AroK) {Campylobacter jejuni [Tax | 88.5 | |
| d1ckea_ | 225 | CMP kinase {Escherichia coli [TaxId: 562]} | 88.39 | |
| d1teva_ | 194 | UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606] | 88.37 | |
| d1xtqa1 | 167 | GTP-binding protein RheB {Human (Homo sapiens) [Ta | 88.37 | |
| d1ofha_ | 309 | HslU {Haemophilus influenzae [TaxId: 727]} | 88.34 | |
| d1nksa_ | 194 | Adenylate kinase {Archaeon Sulfolobus acidocaldari | 88.31 | |
| d1zaka1 | 189 | Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | 88.28 | |
| d4tmka_ | 210 | Thymidylate kinase {Escherichia coli [TaxId: 562]} | 88.27 | |
| d2bv3a2 | 276 | Elongation factor G (EF-G), N-terminal (G) domain | 88.21 | |
| d1ixza_ | 247 | AAA domain of cell division protein FtsH {Thermus | 88.15 | |
| d2iyva1 | 165 | Shikimate kinase (AroK) {Mycobacterium tuberculosi | 88.09 | |
| d1egaa1 | 179 | GTPase Era, N-terminal domain {Escherichia coli [T | 88.05 | |
| d1s3ga1 | 182 | Adenylate kinase {Bacillus globisporus [TaxId: 145 | 88.04 | |
| d1kkma_ | 176 | HPr kinase HprK C-terminal domain {Lactobacillus c | 87.93 | |
| d1szpa2 | 251 | DNA repair protein Rad51, catalytic domain {Baker' | 87.83 | |
| d1sxja2 | 253 | Replication factor C1 {Baker's yeast (Saccharomyce | 87.76 | |
| d1vhta_ | 208 | Dephospho-CoA kinase {Escherichia coli [TaxId: 562 | 87.75 | |
| d1zina1 | 182 | Adenylate kinase {Bacillus stearothermophilus [Tax | 87.66 | |
| d1j8yf2 | 211 | GTPase domain of the signal sequence recognition p | 87.61 | |
| d1bifa1 | 213 | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphata | 87.61 | |
| d1tf7a1 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 87.6 | |
| d1e4va1 | 179 | Adenylate kinase {Escherichia coli [TaxId: 562]} | 87.59 | |
| d1nksa_ | 194 | Adenylate kinase {Archaeon Sulfolobus acidocaldari | 87.39 | |
| d1ky3a_ | 175 | Rab-related protein ypt7p {Baker's yeast (Saccharo | 87.35 | |
| d1r8sa_ | 160 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 87.29 | |
| d2fh5b1 | 207 | Signal recognition particle receptor beta-subunit | 87.27 | |
| d1ckea_ | 225 | CMP kinase {Escherichia coli [TaxId: 562]} | 87.27 | |
| d2p67a1 | 327 | LAO/AO transport system kinase ArgK {Escherichia c | 87.25 | |
| d1lnza2 | 185 | Obg GTP-binding protein middle domain {Bacillus su | 87.19 | |
| d2gj8a1 | 161 | Probable tRNA modification GTPase TrmE (MnmE), G d | 87.16 | |
| d1gvnb_ | 273 | Plasmid maintenance system epsilon/zeta, toxin zet | 87.15 | |
| d2iyva1 | 165 | Shikimate kinase (AroK) {Mycobacterium tuberculosi | 87.15 | |
| d1ofha_ | 309 | HslU {Haemophilus influenzae [TaxId: 727]} | 87.06 | |
| d1upta_ | 169 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 87.03 | |
| d1qhla_ | 222 | Cell division protein MukB {Escherichia coli [TaxI | 86.97 | |
| d1a7ja_ | 288 | Phosphoribulokinase {Rhodobacter sphaeroides [TaxI | 86.93 | |
| d1s3ga1 | 182 | Adenylate kinase {Bacillus globisporus [TaxId: 145 | 86.91 | |
| d1vhta_ | 208 | Dephospho-CoA kinase {Escherichia coli [TaxId: 562 | 86.91 | |
| d2erya1 | 171 | r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 86.8 | |
| d1ksha_ | 165 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 86.78 | |
| d1szpa2 | 251 | DNA repair protein Rad51, catalytic domain {Baker' | 86.68 | |
| d1in4a2 | 238 | Holliday junction helicase RuvB {Thermotoga mariti | 86.67 | |
| d2cdna1 | 181 | Adenylate kinase {Mycobacterium tuberculosis [TaxI | 86.63 | |
| d1odfa_ | 286 | Hypothetical protein Ygr205W {Baker's yeast (Sacch | 86.63 | |
| d2qtvb1 | 166 | SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 86.45 | |
| d1tf7a1 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 86.43 | |
| d1ko7a2 | 169 | HPr kinase HprK C-terminal domain {Staphylococcus | 86.39 | |
| d1f6ba_ | 186 | SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: | 86.24 | |
| d1xpua3 | 289 | Transcription termination factor Rho, ATPase domai | 86.22 | |
| d1udxa2 | 180 | Obg GTP-binding protein middle domain {Thermus the | 86.2 | |
| d1knxa2 | 177 | HPr kinase HprK C-terminal domain {Mycoplasma pneu | 86.08 | |
| d1xzpa2 | 160 | TrmE GTPase domain {Thermotoga maritima [TaxId: 23 | 85.94 | |
| d1pzna2 | 254 | DNA repair protein Rad51, catalytic domain {Archae | 85.9 | |
| d1fnna2 | 276 | CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T | 85.86 | |
| d2erxa1 | 171 | di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 85.83 | |
| d1u8za_ | 168 | Ras-related protein RalA {Cotton-top tamarin (Sagu | 85.68 | |
| d1zj6a1 | 177 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 85.64 | |
| d1v5wa_ | 258 | Meiotic recombination protein DMC1/LIM15 homolog { | 85.57 | |
| d1ni3a1 | 296 | YchF GTP-binding protein N-terminal domain {Fissio | 85.55 | |
| d1e4va1 | 179 | Adenylate kinase {Escherichia coli [TaxId: 562]} | 85.5 | |
| d2i1qa2 | 258 | DNA repair protein Rad51, catalytic domain {Archae | 85.49 | |
| d1g41a_ | 443 | HslU {Haemophilus influenzae [TaxId: 727]} | 85.49 | |
| d2cdna1 | 181 | Adenylate kinase {Mycobacterium tuberculosis [TaxI | 85.37 | |
| d3raba_ | 169 | Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | 85.37 | |
| d1fzqa_ | 176 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 85.26 | |
| d2fh5b1 | 207 | Signal recognition particle receptor beta-subunit | 85.13 | |
| d1u94a1 | 263 | RecA protein, ATPase-domain {Escherichia coli [Tax | 85.08 | |
| d2fnaa2 | 283 | Archaeal ATPase SSO1545 {Sulfolobus solfataricus [ | 85.02 | |
| d2atva1 | 168 | Ras-like estrogen-regulated growth inhibitor, RERG | 85.01 | |
| d1okkd2 | 207 | GTPase domain of the signal recognition particle r | 84.99 | |
| d2ak3a1 | 189 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 84.92 | |
| d2g3ya1 | 172 | GTP-binding protein GEM {Human (Homo sapiens) [Tax | 84.91 | |
| d1wb1a4 | 179 | Elongation factor SelB, N-terminal domain {Methano | 84.74 | |
| d1g7sa4 | 227 | Initiation factor IF2/eIF5b, N-terminal (G) domain | 84.71 | |
| d1wmsa_ | 174 | Rab9a {Human (Homo sapiens) [TaxId: 9606]} | 84.6 | |
| d2qm8a1 | 323 | Metallochaperone MeaB {Methylobacterium extorquens | 84.52 | |
| d1deka_ | 241 | Deoxynucleoside monophosphate kinase {Bacteriophag | 84.43 | |
| d2qy9a2 | 211 | GTPase domain of the signal recognition particle r | 84.41 | |
| d1zd9a1 | 164 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 84.38 | |
| d2erya1 | 171 | r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 84.31 | |
| d1njfa_ | 239 | delta prime subunit of DNA polymerase III, N-domai | 84.27 | |
| d1fnna2 | 276 | CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T | 84.25 | |
| d1sxja2 | 253 | Replication factor C1 {Baker's yeast (Saccharomyce | 84.19 | |
| d1z0ja1 | 167 | Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | 84.17 | |
| d2f7sa1 | 186 | Rab27b {Human (Homo sapiens) [TaxId: 9606]} | 84.17 | |
| d1x1ra1 | 169 | Ras-related protein M-Ras (XRas) {Mouse (Mus muscu | 84.11 | |
| d1in4a2 | 238 | Holliday junction helicase RuvB {Thermotoga mariti | 84.03 | |
| d2bmja1 | 175 | Centaurin gamma 1, G domain {Human (Homo sapiens) | 84.03 | |
| d1v5wa_ | 258 | Meiotic recombination protein DMC1/LIM15 homolog { | 84.0 | |
| d2fnaa2 | 283 | Archaeal ATPase SSO1545 {Sulfolobus solfataricus [ | 83.99 | |
| d1vg8a_ | 184 | Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | 83.95 | |
| d2gjsa1 | 168 | Rad {Human (Homo sapiens) [TaxId: 9606]} | 83.94 | |
| d1ctqa_ | 166 | cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9 | 83.92 | |
| d1iqpa2 | 231 | Replication factor C {Archaeon Pyrococcus furiosus | 83.91 | |
| d1yzqa1 | 164 | Rab6 {Human (Homo sapiens) [TaxId: 9606]} | 83.89 | |
| d1ixza_ | 247 | AAA domain of cell division protein FtsH {Thermus | 83.86 | |
| d1gsia_ | 208 | Thymidylate kinase {Mycobacterium tuberculosis [Ta | 83.84 | |
| d2f9la1 | 175 | Rab11b {Human (Homo sapiens) [TaxId: 9606]} | 83.81 | |
| d1z2aa1 | 164 | Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | 83.78 | |
| d1pzna2 | 254 | DNA repair protein Rad51, catalytic domain {Archae | 83.67 | |
| d2ak3a1 | 189 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 83.59 | |
| d1gsia_ | 208 | Thymidylate kinase {Mycobacterium tuberculosis [Ta | 83.45 | |
| d1wxqa1 | 319 | GTP-binding protein PH0525 {Pyrococcus horikoshii | 83.41 | |
| d1zj6a1 | 177 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 83.37 | |
| d1g41a_ | 443 | HslU {Haemophilus influenzae [TaxId: 727]} | 83.35 | |
| d1xpua3 | 289 | Transcription termination factor Rho, ATPase domai | 83.34 | |
| d1ky3a_ | 175 | Rab-related protein ypt7p {Baker's yeast (Saccharo | 83.27 | |
| d2dy1a2 | 267 | Elongation factor G (EF-G), N-terminal (G) domain | 83.16 | |
| d1akya1 | 180 | Adenylate kinase {Baker's yeast (Saccharomyces cer | 83.1 | |
| d1iqpa2 | 231 | Replication factor C {Archaeon Pyrococcus furiosus | 82.99 | |
| d1sxjd2 | 237 | Replication factor C2 {Baker's yeast (Saccharomyce | 82.9 | |
| d1xp8a1 | 268 | RecA protein, ATPase-domain {Deinococcus radiodura | 82.87 | |
| d1akya1 | 180 | Adenylate kinase {Baker's yeast (Saccharomyces cer | 82.86 | |
| d1htwa_ | 158 | Hypothetical protein HI0065 {Haemophilus influenza | 82.84 | |
| d2i1qa2 | 258 | DNA repair protein Rad51, catalytic domain {Archae | 82.83 | |
| d1g7sa4 | 227 | Initiation factor IF2/eIF5b, N-terminal (G) domain | 82.8 | |
| d1htwa_ | 158 | Hypothetical protein HI0065 {Haemophilus influenza | 82.7 | |
| d1ixsb2 | 239 | Holliday junction helicase RuvB {Thermus thermophi | 82.7 | |
| d1deka_ | 241 | Deoxynucleoside monophosphate kinase {Bacteriophag | 82.69 | |
| d1e32a2 | 258 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 82.69 | |
| d1jala1 | 278 | YchF GTP-binding protein N-terminal domain {Haemop | 82.68 | |
| d1puia_ | 188 | Probable GTPase EngB {Escherichia coli [TaxId: 562 | 82.56 | |
| d1kkma_ | 176 | HPr kinase HprK C-terminal domain {Lactobacillus c | 82.49 | |
| d2jdid3 | 276 | Central domain of beta subunit of F1 ATP synthase | 82.43 | |
| d3raba_ | 169 | Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | 82.42 | |
| d1sxjd2 | 237 | Replication factor C2 {Baker's yeast (Saccharomyce | 82.32 | |
| d1kaoa_ | 167 | Rap2a {Human (Homo sapiens) [TaxId: 9606]} | 82.31 | |
| d2ew1a1 | 171 | Rab30 {Human (Homo sapiens) [TaxId: 9606]} | 82.24 | |
| d1ctqa_ | 166 | cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9 | 82.23 | |
| d1svsa1 | 195 | Transducin (alpha subunit) {Rat (Rattus norvegicus | 82.21 | |
| d1r6bx3 | 315 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 82.17 | |
| d1jwyb_ | 306 | Dynamin G domain {Dictyostelium discoideum [TaxId: | 82.14 | |
| d1moza_ | 182 | ADP-ribosylation factor {Baker's yeast (Saccharomy | 82.02 | |
| d1g16a_ | 166 | Rab-related protein Sec4 {Baker's yeast (Saccharom | 81.91 | |
| d1mo6a1 | 269 | RecA protein, ATPase-domain {Mycobacterium tubercu | 81.75 | |
| d1mh1a_ | 183 | Rac {Human (Homo sapiens) [TaxId: 9606]} | 81.74 | |
| d2a5ja1 | 173 | Rab2b {Human (Homo sapiens) [TaxId: 9606]} | 81.69 | |
| d1u94a1 | 263 | RecA protein, ATPase-domain {Escherichia coli [Tax | 81.55 | |
| d1f5na2 | 277 | Interferon-induced guanylate-binding protein 1 (GB | 81.46 | |
| d1xp8a1 | 268 | RecA protein, ATPase-domain {Deinococcus radiodura | 81.42 | |
| d1d2na_ | 246 | Hexamerization domain of N-ethylmalemide-sensitive | 81.41 | |
| d1z2aa1 | 164 | Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | 81.38 | |
| d1vg8a_ | 184 | Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | 81.35 | |
| d2f9la1 | 175 | Rab11b {Human (Homo sapiens) [TaxId: 9606]} | 81.31 | |
| d2qm8a1 | 323 | Metallochaperone MeaB {Methylobacterium extorquens | 81.31 | |
| d2qy9a2 | 211 | GTPase domain of the signal recognition particle r | 81.3 | |
| d1azta2 | 221 | Transducin (alpha subunit) {Cow (Bos taurus) [TaxI | 81.28 | |
| d1e9ra_ | 433 | Bacterial conjugative coupling protein TrwB {Esche | 81.25 | |
| d1xtqa1 | 167 | GTP-binding protein RheB {Human (Homo sapiens) [Ta | 81.17 | |
| d1p6xa_ | 333 | Thymidine kinase {Equine herpesvirus type 4 [TaxId | 81.15 | |
| d1vmaa2 | 213 | GTPase domain of the signal recognition particle r | 81.1 | |
| d1zd9a1 | 164 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 81.08 | |
| d1jwyb_ | 306 | Dynamin G domain {Dictyostelium discoideum [TaxId: | 81.0 | |
| d1m7ba_ | 179 | RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | 80.93 | |
| d1z06a1 | 165 | Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | 80.86 | |
| d2akab1 | 299 | Dynamin G domain {Rat (Rattus norvegicus) [TaxId: | 80.65 | |
| d2akab1 | 299 | Dynamin G domain {Rat (Rattus norvegicus) [TaxId: | 80.39 | |
| d1svma_ | 362 | Papillomavirus large T antigen helicase domain {Si | 80.34 | |
| d1z0fa1 | 166 | Rab14 {Human (Homo sapiens) [TaxId: 9606]} | 80.3 | |
| d1kmqa_ | 177 | RhoA {Human (Homo sapiens) [TaxId: 9606]} | 80.21 | |
| d1x3sa1 | 177 | Rab18 {Human (Homo sapiens) [TaxId: 9606]} | 80.2 | |
| d2bcgy1 | 194 | GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi | 80.17 | |
| d2bmea1 | 174 | Rab4a {Human (Homo sapiens) [TaxId: 9606]} | 80.16 | |
| d2ocpa1 | 241 | Deoxyguanosine kinase {Human (Homo sapiens) [TaxId | 80.08 | |
| d1kaoa_ | 167 | Rap2a {Human (Homo sapiens) [TaxId: 9606]} | 80.07 | |
| d2f7sa1 | 186 | Rab27b {Human (Homo sapiens) [TaxId: 9606]} | 80.07 | |
| d2fn4a1 | 173 | r-Ras {Human (Homo sapiens) [TaxId: 9606]} | 80.02 |
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=100.00 E-value=0 Score=510.26 Aligned_cols=245 Identities=51% Similarity=0.832 Sum_probs=234.8
Q ss_pred CCCCCCCEEEEEEEEECCCCCCCCCCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHH
Q ss_conf 45655649998688888999996530120387628958999838999778899988132669841899999507999978
Q 001411 828 VTEIKGNIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLR 907 (1082)
Q Consensus 828 ~~~~~~~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~iaIvG~SGsGKSTL~~lL~gl~~p~~G~I~idg~di~~~~~~ 907 (1082)
.....|.|+|+||+|+|+.+ ..++|+||||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.|+++++..
T Consensus 10 l~~~~g~I~~~nvsf~Y~~~-~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~ 88 (255)
T d2hyda1 10 IEIKQGRIDIDHVSFQYNDN-EAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTG 88 (255)
T ss_dssp CCCCSCCEEEEEEEECSCSS-SCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCHH
T ss_pred CCCCCCEEEEEEEEEEECCC-CCCCEECEEEEECCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCEECCCCCHH
T ss_conf 77778879999889995999-97606443899839989999889998099999999712786300015399875307888
Q ss_pred HHHCCEEEECCCCCCCCCCHHHHHCCCCCCCCHHHHHHHHHHHCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 87333288836676664247888323998879999999999900889996274654442269999899249999999999
Q 001411 908 SLRRKIGLVQQEPALFSTTIYENIKYGNEDASEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARA 987 (1082)
Q Consensus 908 ~lr~~i~~vpQ~~~lf~gTIreNl~~~~~~~~d~ei~~a~~~a~l~~~I~~lp~gldt~i~e~g~~LSgGQkQrlaLARA 987 (1082)
.+|++++||||++.+|++||+|||.++.+..+++++++|++.+++++++.++|+||||.+++.|.+||||||||+|||||
T Consensus 89 ~lr~~i~~v~Q~~~lf~~Ti~eNi~~g~~~~~~~~~~~al~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~QRi~iARa 168 (255)
T d2hyda1 89 SLRNQIGLVQQDNILFSDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARI 168 (255)
T ss_dssp HHHHTEEEECSSCCCCSSBHHHHHGGGCSSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHH
T ss_pred HHHHEEEEEECCCCCCCCCHHHHHHCCCCCCCHHHHHHHHHHHCCHHHHHHCCCCCCCHHCCCCCCCCHHHHHHHHHHHH
T ss_conf 86341456510156899879999851586799999999999969799997362420103338889849999999999999
Q ss_pred HCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHCCCEEEEEECCEEEEECCHHHHHHHCCCHHH
Q ss_conf 70399877851777898979899999999986189649998069225530588999959889882596789510052489
Q 001411 988 ILKNPSILLLDEATSALDTASENLIQEALDKLMEGRTTIMVAHRLSTIRNADKIAVLQQGKVAEIGSHEQLLRKENGIYK 1067 (1082)
Q Consensus 988 ll~~p~ILiLDEpTS~LD~~te~~I~~~L~~~~~~~TvI~IsHrl~~i~~~DrI~vl~~G~ive~G~~~eLl~~~~~~y~ 1067 (1082)
++++|+|||||||||+||+.+++.|++.|+.+.+++|+|+||||++.+..||||++|++|+|++.|+|+||++ .++.|+
T Consensus 169 l~~~p~ililDEpts~LD~~t~~~i~~~l~~l~~~~TvI~itH~~~~~~~~D~ii~l~~G~iv~~G~~~eLl~-~~~~y~ 247 (255)
T d2hyda1 169 FLNNPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTITHADKIVVIENGHIVETGTHRELIA-KQGAYE 247 (255)
T ss_dssp HHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSSGGGTTTCSEEEEEETTEEEEEECHHHHHH-TTSHHH
T ss_pred HHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHCCEEEEEECCEEEEECCHHHHHH-CCCHHH
T ss_conf 8559989998376544797799999999998753888999968999998599999998999999889999986-884999
Q ss_pred HHHHHHH
Q ss_conf 9999841
Q 001411 1068 QLIRLQQ 1074 (1082)
Q Consensus 1068 ~l~~~~~ 1074 (1082)
+||..|+
T Consensus 248 ~l~~~Q~ 254 (255)
T d2hyda1 248 HLYSIQN 254 (255)
T ss_dssp HHHTTTT
T ss_pred HHHHHCC
T ss_conf 9999747
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=504.42 Aligned_cols=241 Identities=46% Similarity=0.779 Sum_probs=232.1
Q ss_pred CEEEEEEEEECCCCCCCCCCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHHHHCCE
Q ss_conf 49998688888999996530120387628958999838999778899988132669841899999507999978873332
Q 001411 834 NIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRKI 913 (1082)
Q Consensus 834 ~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~iaIvG~SGsGKSTL~~lL~gl~~p~~G~I~idg~di~~~~~~~lr~~i 913 (1082)
.|+|+||+|+|+.+ .+++|+||||+|++||++||+|+||||||||+++|+|+++|++|+|++||+|+++++.+++|+++
T Consensus 1 eI~~~nvsf~Y~~~-~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~lr~~i 79 (241)
T d2pmka1 1 DITFRNIRFRYKPD-SPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQV 79 (241)
T ss_dssp EEEEEEEEEESSTT-SCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHE
T ss_pred CEEEEEEEEEECCC-CCCEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCEEEECCEEECCCCHHHHHCEE
T ss_conf 92999999990899-96037424899849999999999999899999999735788888999999994400246553528
Q ss_pred EEECCCCCCCCCCHHHHHCCCCCCCCHHHHHHHHHHHCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCC
Q ss_conf 88836676664247888323998879999999999900889996274654442269999899249999999999703998
Q 001411 914 GLVQQEPALFSTTIYENIKYGNEDASEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPS 993 (1082)
Q Consensus 914 ~~vpQ~~~lf~gTIreNl~~~~~~~~d~ei~~a~~~a~l~~~I~~lp~gldt~i~e~g~~LSgGQkQrlaLARAll~~p~ 993 (1082)
+||||+|.+|++||+|||.++.+..++++++.+++.+++.+++..+|+|++|.+++.|.+||||||||+|||||++++|+
T Consensus 80 ~~v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~t~i~~~g~~LSGGq~QRvalARal~~~p~ 159 (241)
T d2pmka1 80 GVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPK 159 (241)
T ss_dssp EEECSSCCCTTSBHHHHHCTTSTTCCHHHHHHHHHHHTCHHHHTTSTTGGGSBCSTTTTCCCHHHHHHHHHHHHHTTCCS
T ss_pred EEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCC
T ss_conf 89824465578400035223575543888999999975578887632013443278788669889898754434441651
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHCCCEEEEEECCEEEEECCHHHHHHHCCCHHHHHHHHH
Q ss_conf 77851777898979899999999986189649998069225530588999959889882596789510052489999984
Q 001411 994 ILLLDEATSALDTASENLIQEALDKLMEGRTTIMVAHRLSTIRNADKIAVLQQGKVAEIGSHEQLLRKENGIYKQLIRLQ 1073 (1082)
Q Consensus 994 ILiLDEpTS~LD~~te~~I~~~L~~~~~~~TvI~IsHrl~~i~~~DrI~vl~~G~ive~G~~~eLl~~~~~~y~~l~~~~ 1073 (1082)
|||||||||+||+.+++.|++.|++..+++|+|+||||++.++.||||++|++|+|++.|+|++|+++.++.|++||+.|
T Consensus 160 ililDEpts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~~~D~i~vl~~G~Iv~~G~~~ell~~~~~~y~~l~~~Q 239 (241)
T d2pmka1 160 ILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQLQ 239 (241)
T ss_dssp EEEECCCCSCCCHHHHHHHHHHHHHHHTTSEEEEECSSGGGGTTSSEEEEEETTEEEEEECHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHCCEEEEEECCEEEEECCHHHHHHCCCCHHHHHHHHH
T ss_conf 35564776555989999999999998589989999788999984999999989999998899999829987899999981
Q ss_pred HC
Q ss_conf 12
Q 001411 1074 QD 1075 (1082)
Q Consensus 1074 ~~ 1075 (1082)
.+
T Consensus 240 ~d 241 (241)
T d2pmka1 240 SD 241 (241)
T ss_dssp CC
T ss_pred CC
T ss_conf 39
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=0 Score=498.07 Aligned_cols=245 Identities=48% Similarity=0.801 Sum_probs=233.1
Q ss_pred CCCCCCCEEEEEEEEECCCCCCCCCCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHH
Q ss_conf 45655649998688888999996530120387628958999838999778899988132669841899999507999978
Q 001411 828 VTEIKGNIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLR 907 (1082)
Q Consensus 828 ~~~~~~~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~iaIvG~SGsGKSTL~~lL~gl~~p~~G~I~idg~di~~~~~~ 907 (1082)
.++..|.|+|+||+|+|+.+ +.++|+||||+|++||++|||||||||||||+++|+|+++|++|+|++||.|+++++..
T Consensus 7 ~~~~~g~I~~~nvsf~Y~~~-~~~~L~~isl~i~~Ge~iaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~ 85 (253)
T d3b60a1 7 IDRATGDLEFRNVTFTYPGR-EVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLA 85 (253)
T ss_dssp CSCCCCCEEEEEEEECSSSS-SCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCHH
T ss_pred CCCCCEEEEEEEEEEEECCC-CCCEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCCCCCHHHHH
T ss_conf 67783079999889992999-97635332899859999999999998599999998621688846898788012111066
Q ss_pred HHHCCEEEECCCCCCCCCCHHHHHCCCCC-CCCHHHHHHHHHHHCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 87333288836676664247888323998-87999999999990088999627465444226999989924999999999
Q 001411 908 SLRRKIGLVQQEPALFSTTIYENIKYGNE-DASEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIAR 986 (1082)
Q Consensus 908 ~lr~~i~~vpQ~~~lf~gTIreNl~~~~~-~~~d~ei~~a~~~a~l~~~I~~lp~gldt~i~e~g~~LSgGQkQrlaLAR 986 (1082)
.+|++++||||++.+|++|+++|+.++.+ ..+++++++|++.++++++++.+|+||+|.+++.|.+||||||||+||||
T Consensus 86 ~~r~~i~~v~Q~~~l~~~ti~~n~~~~~~~~~~~~~i~~a~~~~~l~~~i~~l~~gl~t~~~~~~~~LSGGqkQRvaiAR 165 (253)
T d3b60a1 86 SLRNQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIAR 165 (253)
T ss_dssp HHHHTEEEECSSCCCCSSBHHHHHHTTTTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHH
T ss_pred HHHHEEEEEEECCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCCCCHHHHHHHHHHH
T ss_conf 54206879950254478620243320572208999999999998179999735544101434888984999999999999
Q ss_pred HHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHCCCEEEEEECCEEEEECCHHHHHHHCCCHH
Q ss_conf 97039987785177789897989999999998618964999806922553058899995988988259678951005248
Q 001411 987 AILKNPSILLLDEATSALDTASENLIQEALDKLMEGRTTIMVAHRLSTIRNADKIAVLQQGKVAEIGSHEQLLRKENGIY 1066 (1082)
Q Consensus 987 All~~p~ILiLDEpTS~LD~~te~~I~~~L~~~~~~~TvI~IsHrl~~i~~~DrI~vl~~G~ive~G~~~eLl~~~~~~y 1066 (1082)
|++++|+|||||||||+||+.+++.|++.|+++.+++|+|+||||++.+..||+|++|++|+|++.|+|+||++ .++.|
T Consensus 166 al~~~p~ililDEpts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~~~D~v~vl~~G~Iv~~G~~~eLl~-~~~~y 244 (253)
T d3b60a1 166 ALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEQADEIVVVEDGIIVERGTHSELLA-QHGVY 244 (253)
T ss_dssp HHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHTTSEEEEECSCGGGTTTCSEEEEEETTEEEEEECHHHHHH-HTSSH
T ss_pred HHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHCCEEEEEECCEEEEECCHHHHHH-CCCHH
T ss_conf 99549988995164445898899999999987522788999988799998599999998999999889999986-89399
Q ss_pred HHHHHHHH
Q ss_conf 99999841
Q 001411 1067 KQLIRLQQ 1074 (1082)
Q Consensus 1067 ~~l~~~~~ 1074 (1082)
++||+.|.
T Consensus 245 ~~l~~~Q~ 252 (253)
T d3b60a1 245 AQLHKMQF 252 (253)
T ss_dssp HHHHHHTC
T ss_pred HHHHHHCC
T ss_conf 99999725
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=0 Score=489.05 Aligned_cols=241 Identities=39% Similarity=0.709 Sum_probs=228.4
Q ss_pred CCCCCEEEEEEEEECCCCCCCCCCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHHH
Q ss_conf 65564999868888899999653012038762895899983899977889998813266984189999950799997887
Q 001411 830 EIKGNIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSL 909 (1082)
Q Consensus 830 ~~~~~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~iaIvG~SGsGKSTL~~lL~gl~~p~~G~I~idg~di~~~~~~~l 909 (1082)
..+|.|+|+||+|+|+.+++.++|+||||+|++||++|||||||||||||+++|+|+|+|++|+|++||+|+++++...+
T Consensus 7 ~~~g~I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~li~gl~~p~~G~I~i~g~~i~~~~~~~~ 86 (251)
T d1jj7a_ 7 HLEGLVQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTGGQLLLDGKPLPQYEHRYL 86 (251)
T ss_dssp CCCCCEEEEEEEECCTTSTTCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHH
T ss_pred CCCCEEEEEEEEEECCCCCCCEEEECEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCHHHHHHH
T ss_conf 65336999998998899999976744389984998999999999849999999861437876899889985311013788
Q ss_pred HCCEEEECCCCCCCCCCHHHHHCCCC-CCCCHHHHHHHHHHHCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 33328883667666424788832399-88799999999999008899962746544422699998992499999999997
Q 001411 910 RRKIGLVQQEPALFSTTIYENIKYGN-EDASEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAI 988 (1082)
Q Consensus 910 r~~i~~vpQ~~~lf~gTIreNl~~~~-~~~~d~ei~~a~~~a~l~~~I~~lp~gldt~i~e~g~~LSgGQkQrlaLARAl 988 (1082)
|++++||||+|.+|++||+||+.++. +..++.++.++++.+++.+++..+|+|+++.+++.|.+||||||||+|||||+
T Consensus 87 r~~i~~v~Q~~~lf~~tv~eni~~g~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~i~~~~~~LSGGqkQRvaiARal 166 (251)
T d1jj7a_ 87 HRQVAAVGQEPQVFGRSLQENIAYGLTQKPTMEEITAAAVKSGAHSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARAL 166 (251)
T ss_dssp HHHEEEECSSCCCCSSBHHHHHHCSCSSCCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCCSSCSSSCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCHHHCEEEEEEECC
T ss_conf 87765404565002763465545421013027889999999989999985612111367516766895470489986044
Q ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCC--CCEEEEEECCCHHHHCCCEEEEEECCEEEEECCHHHHHHHCCCHH
Q ss_conf 039987785177789897989999999998618--964999806922553058899995988988259678951005248
Q 001411 989 LKNPSILLLDEATSALDTASENLIQEALDKLME--GRTTIMVAHRLSTIRNADKIAVLQQGKVAEIGSHEQLLRKENGIY 1066 (1082)
Q Consensus 989 l~~p~ILiLDEpTS~LD~~te~~I~~~L~~~~~--~~TvI~IsHrl~~i~~~DrI~vl~~G~ive~G~~~eLl~~~~~~y 1066 (1082)
+++|+|+|||||||+||+.++..|++.|++..+ ++|+|+||||++.+..||||++|++|+|++.|+|+||++ .++.|
T Consensus 167 ~~~p~ililDEpTs~LD~~~~~~i~~~l~~l~~~~~~Tvi~itH~l~~~~~aDrI~vl~~G~iv~~Gt~~eLl~-~~~~y 245 (251)
T d1jj7a_ 167 IRKPCVLILDDATSALDANSQLQVEQLLYESPERYSRSVLLITQHLSLVEQADHILFLEGGAIREGGTHQQLME-KKGCY 245 (251)
T ss_dssp TTCCSEEEEESTTTTCCHHHHHHHHHHHHTCGGGGGCEEEEECSCHHHHHTCSEEEEEETTEEEEEECHHHHHH-HTSHH
T ss_pred CCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHCCEEEEEECCEEEEECCHHHHHH-CCCHH
T ss_conf 56870787167576568536899999999976506989999959799998599999998999999889999985-97588
Q ss_pred HHHHH
Q ss_conf 99999
Q 001411 1067 KQLIR 1071 (1082)
Q Consensus 1067 ~~l~~ 1071 (1082)
++||+
T Consensus 246 ~~l~~ 250 (251)
T d1jj7a_ 246 WAMVQ 250 (251)
T ss_dssp HHHHC
T ss_pred HHHHC
T ss_conf 99962
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Probab=100.00 E-value=0 Score=490.05 Aligned_cols=237 Identities=43% Similarity=0.740 Sum_probs=227.3
Q ss_pred EEEEEEEEECCCCCCCCCCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHHHHCCEE
Q ss_conf 99986888889999965301203876289589998389997788999881326698418999995079999788733328
Q 001411 835 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRKIG 914 (1082)
Q Consensus 835 I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~iaIvG~SGsGKSTL~~lL~gl~~p~~G~I~idg~di~~~~~~~lr~~i~ 914 (1082)
|+++||+|+|+. .+++|+||||+|++||++||+||||||||||+++|+|+++|++|+|++||+|+++++.+.+|++++
T Consensus 2 le~knvsf~Y~~--~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 79 (242)
T d1mv5a_ 2 LSARHVDFAYDD--SEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIG 79 (242)
T ss_dssp EEEEEEEECSSS--SSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCC
T ss_pred EEEEEEEEECCC--CCCEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEECCEEECCCCHHHHHHHEE
T ss_conf 799988998799--984142258998599999999999997999999999960989877988998844246788874367
Q ss_pred EECCCCCCCCCCHHHHHCCCC-CCCCHHHHHHHHHHHCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCC
Q ss_conf 883667666424788832399-8879999999999900889996274654442269999899249999999999703998
Q 001411 915 LVQQEPALFSTTIYENIKYGN-EDASEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPS 993 (1082)
Q Consensus 915 ~vpQ~~~lf~gTIreNl~~~~-~~~~d~ei~~a~~~a~l~~~I~~lp~gldt~i~e~g~~LSgGQkQrlaLARAll~~p~ 993 (1082)
||||+|.+|++||+||+.++. +..++++++++++.+++.+++..+|++++|.++++|.+||||||||+|||||++++|+
T Consensus 80 ~v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~LSGGqkQRv~iARal~~~p~ 159 (242)
T d1mv5a_ 80 FVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPK 159 (242)
T ss_dssp EECCSSCCCCEEHHHHTTSCTTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCS
T ss_pred EECCCCCCCCCCHHHHEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCC
T ss_conf 97566545785345430124455542356778999997555420374210152368789879999999999999852998
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHCCCEEEEEECCEEEEECCHHHHHHHCCCHHHHHHHHH
Q ss_conf 77851777898979899999999986189649998069225530588999959889882596789510052489999984
Q 001411 994 ILLLDEATSALDTASENLIQEALDKLMEGRTTIMVAHRLSTIRNADKIAVLQQGKVAEIGSHEQLLRKENGIYKQLIRLQ 1073 (1082)
Q Consensus 994 ILiLDEpTS~LD~~te~~I~~~L~~~~~~~TvI~IsHrl~~i~~~DrI~vl~~G~ive~G~~~eLl~~~~~~y~~l~~~~ 1073 (1082)
|||||||||+||+.+++.|++.|+++.+++|+|+||||++.+..||||++|++|+|++.|+|+||++ .++.|+++|+.|
T Consensus 160 ililDEpts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~~~D~i~vl~~G~iv~~G~~~eLl~-~~~~y~~l~~~Q 238 (242)
T d1mv5a_ 160 ILMLDEATASLDSESESMVQKALDSLMKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVA-THPLYAKYVSEQ 238 (242)
T ss_dssp EEEEECCSCSSCSSSCCHHHHHHHHHHTTSEEEEECCSHHHHHHCSEEEEEETTEECCCSCHHHHHH-HCHHHHHHHHCC
T ss_pred EEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHCCEEEEEECCEEEEECCHHHHHH-CCHHHHHHHHHH
T ss_conf 9996588655698899999887888717998999978799998499999998999999999999986-896999999998
Q ss_pred H
Q ss_conf 1
Q 001411 1074 Q 1074 (1082)
Q Consensus 1074 ~ 1074 (1082)
.
T Consensus 239 ~ 239 (242)
T d1mv5a_ 239 L 239 (242)
T ss_dssp C
T ss_pred H
T ss_conf 5
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=100.00 E-value=0 Score=458.37 Aligned_cols=241 Identities=51% Similarity=0.851 Sum_probs=232.1
Q ss_pred CCCCEEEEEEEEECCCCCCCCCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHHCCCCCCCEEEECCEECCCCCHHHHHH
Q ss_conf 87748999789988999986410103887489899998499880899999997078899767999895078878788841
Q 001411 202 LAGQIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLRE 281 (1082)
Q Consensus 202 ~~~~i~~~~v~~~y~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~i~g~~~~~~~~~~~~~ 281 (1082)
..+.|+++||+|+|++...++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.+++..++|+
T Consensus 13 ~~g~I~~~nvsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~lr~ 92 (255)
T d2hyda1 13 KQGRIDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRN 92 (255)
T ss_dssp CSCCEEEEEEEECSCSSSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCHHHHHH
T ss_pred CCCEEEEEEEEEEECCCCCCCEECEEEEECCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCEECCCCCHHHHHH
T ss_conf 78879999889995999976064438998399899998899980999999997127863000153998753078888634
Q ss_pred HCEEECCCCCCCHHCHHHHHHCCCCCCCHHHHHHHHHHHCHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCC
Q ss_conf 13587367776722099988339999999999999999544988862998755423589998996899999999860569
Q 001411 282 QMGLVSQEPALFATSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRN 361 (1082)
Q Consensus 282 ~i~~v~Q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqrialARal~~~ 361 (1082)
+++||+|+|++|++||+|||+++.+..++++++++++.+++++++..+|+|++|.++++|.+||||||||++||||++++
T Consensus 93 ~i~~v~Q~~~lf~~Ti~eNi~~g~~~~~~~~~~~al~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~QRi~iARal~~~ 172 (255)
T d2hyda1 93 QIGLVQQDNILFSDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNN 172 (255)
T ss_dssp TEEEECSSCCCCSSBHHHHHGGGCSSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHHHHHC
T ss_pred EEEEEECCCCCCCCCHHHHHHCCCCCCCHHHHHHHHHHHCCHHHHHHCCCCCCCHHCCCCCCCCHHHHHHHHHHHHHHCC
T ss_conf 14565101568998799998515867999999999999697999973624201033388898499999999999998559
Q ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCEEEEEECCEEEEECCCHHHHHCCCHHHHHHHH
Q ss_conf 97657717545889897999999999770997399980494300138979999497898841710322008325999985
Q 001411 362 PKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRDVDTIMVLKNGQVVESGTHVDLISKGGEYAALVNL 441 (1082)
Q Consensus 362 ~~illlDEpts~lD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~ 441 (1082)
|+|++||||||+||++++..+++.+..+.+++|+|+||||++.+..||+|++|++|++++.|++++++++.+.|++++..
T Consensus 173 p~ililDEpts~LD~~t~~~i~~~l~~l~~~~TvI~itH~~~~~~~~D~ii~l~~G~iv~~G~~~eLl~~~~~y~~l~~~ 252 (255)
T d2hyda1 173 PPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTITHADKIVVIENGHIVETGTHRELIAKQGAYEHLYSI 252 (255)
T ss_dssp CSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSSGGGTTTCSEEEEEETTEEEEEECHHHHHHTTSHHHHHHTT
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHCCEEEEEECCEEEEECCHHHHHHCCCHHHHHHHH
T ss_conf 98999837654479779999999999875388899996899999859999999899999988999998688499999997
Q ss_pred H
Q ss_conf 3
Q 001411 442 Q 442 (1082)
Q Consensus 442 ~ 442 (1082)
|
T Consensus 253 Q 253 (255)
T d2hyda1 253 Q 253 (255)
T ss_dssp T
T ss_pred C
T ss_conf 4
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=452.25 Aligned_cols=239 Identities=49% Similarity=0.804 Sum_probs=229.0
Q ss_pred CEEEEEEEEECCCCCCCCCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHHCCCCCCCEEEECCEECCCCCHHHHHHHCE
Q ss_conf 48999789988999986410103887489899998499880899999997078899767999895078878788841135
Q 001411 205 QIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMG 284 (1082)
Q Consensus 205 ~i~~~~v~~~y~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~i~g~~~~~~~~~~~~~~i~ 284 (1082)
+|+|+||+|+|++..+++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++..++..++|++++
T Consensus 1 eI~~~nvsf~Y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~lr~~i~ 80 (241)
T d2pmka1 1 DITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQVG 80 (241)
T ss_dssp EEEEEEEEEESSTTSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEE
T ss_pred CEEEEEEEEEECCCCCCEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCEEEECCEEECCCCHHHHHCEEE
T ss_conf 92999999990899960374248998499999999999998999999997357888889999999944002465535288
Q ss_pred EECCCCCCCHHCHHHHHHCCCCCCCHHHHHHHHHHHCHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCE
Q ss_conf 87367776722099988339999999999999999544988862998755423589998996899999999860569976
Q 001411 285 LVSQEPALFATSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKI 364 (1082)
Q Consensus 285 ~v~Q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqrialARal~~~~~i 364 (1082)
||+|+|++|++||+|||.++.+..+.+++..+++.+++.+++..+|.|++|.++++|.+||||||||++||||++++|+|
T Consensus 81 ~v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~t~i~~~g~~LSGGq~QRvalARal~~~p~i 160 (241)
T d2pmka1 81 VVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKI 160 (241)
T ss_dssp EECSSCCCTTSBHHHHHCTTSTTCCHHHHHHHHHHHTCHHHHTTSTTGGGSBCSTTTTCCCHHHHHHHHHHHHHTTCCSE
T ss_pred EEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCH
T ss_conf 98244655784000352235755438889999999755788876320134432787886698898987544344416513
Q ss_pred EEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCEEEEEECCEEEEECCCHHHHHC-CCHHHHHHHHHH
Q ss_conf 5771754588989799999999977099739998049430013897999949789884171032200-832599998530
Q 001411 365 LLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRDVDTIMVLKNGQVVESGTHVDLISK-GGEYAALVNLQS 443 (1082)
Q Consensus 365 lllDEpts~lD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~-~~~~~~~~~~~~ 443 (1082)
+|||||||+||+.+++.+++.+.++.+++|+|+||||++.+..||+|++|++|+|++.|++++++++ .+.|++++..|.
T Consensus 161 lilDEpts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~~~D~i~vl~~G~Iv~~G~~~ell~~~~~~y~~l~~~Q~ 240 (241)
T d2pmka1 161 LIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQLQS 240 (241)
T ss_dssp EEECCCCSCCCHHHHHHHHHHHHHHHTTSEEEEECSSGGGGTTSSEEEEEETTEEEEEECHHHHHHSTTCHHHHHHHHHC
T ss_pred HHHHCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHCCEEEEEECCEEEEECCHHHHHHCCCCHHHHHHHHHC
T ss_conf 55647765559899999999999985899899997889999849999999899999988999998299878999999813
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=0 Score=450.04 Aligned_cols=244 Identities=49% Similarity=0.773 Sum_probs=232.0
Q ss_pred CCCCCCEEEEEEEEECCCCCCCCCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHHCCCCCCCEEEECCEECCCCCHHHH
Q ss_conf 89877489997899889999864101038874898999984998808999999970788997679998950788787888
Q 001411 200 PKLAGQIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWL 279 (1082)
Q Consensus 200 ~~~~~~i~~~~v~~~y~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~i~g~~~~~~~~~~~ 279 (1082)
++..+.|+++||+|+|++...++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+..++
T Consensus 8 ~~~~g~I~~~nvsf~Y~~~~~~~L~~isl~i~~Ge~iaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~ 87 (253)
T d3b60a1 8 DRATGDLEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASL 87 (253)
T ss_dssp SCCCCCEEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCHHHH
T ss_pred CCCCEEEEEEEEEEEECCCCCCEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCCCCCHHHHHHH
T ss_conf 77830799998899929999763533289985999999999999859999999862168884689878801211106654
Q ss_pred HHHCEEECCCCCCCHHCHHHHHHCCCC-CCCHHHHHHHHHHHCHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHC
Q ss_conf 411358736777672209998833999-9999999999999544988862998755423589998996899999999860
Q 001411 280 REQMGLVSQEPALFATSIANNILLGKE-DASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAV 358 (1082)
Q Consensus 280 ~~~i~~v~Q~~~l~~~ti~~ni~~~~~-~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqrialARal 358 (1082)
|++++|++|+|++|++|+++|+.++.. ..+.+++.++++.+++.++++.+|+|++|.++++|.+|||||||||+|||||
T Consensus 88 r~~i~~v~Q~~~l~~~ti~~n~~~~~~~~~~~~~i~~a~~~~~l~~~i~~l~~gl~t~~~~~~~~LSGGqkQRvaiARal 167 (253)
T d3b60a1 88 RNQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARAL 167 (253)
T ss_dssp HHTEEEECSSCCCCSSBHHHHHHTTTTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHHH
T ss_pred HHEEEEEEECCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCCCCHHHHHHHHHHHHH
T ss_conf 20687995025447862024332057220899999999999817999973554410143488898499999999999999
Q ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCEEEEEECCEEEEECCCHHHHHCCCHHHHH
Q ss_conf 56997657717545889897999999999770997399980494300138979999497898841710322008325999
Q 001411 359 LRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRDVDTIMVLKNGQVVESGTHVDLISKGGEYAAL 438 (1082)
Q Consensus 359 ~~~~~illlDEpts~lD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~ 438 (1082)
+++|+|++||||||+||+.++..+++.+.++.+++|+|+||||++.+..||+|++|++|+|++.|++++++++++.|+++
T Consensus 168 ~~~p~ililDEpts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~~~D~v~vl~~G~Iv~~G~~~eLl~~~~~y~~l 247 (253)
T d3b60a1 168 LRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEQADEIVVVEDGIIVERGTHSELLAQHGVYAQL 247 (253)
T ss_dssp HHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHTTSEEEEECSCGGGTTTCSEEEEEETTEEEEEECHHHHHHHTSSHHHH
T ss_pred HCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHCCEEEEEECCEEEEECCHHHHHHCCCHHHHH
T ss_conf 54998899516444589889999999998752278899998879999859999999899999988999998689399999
Q ss_pred HHHHH
Q ss_conf 98530
Q 001411 439 VNLQS 443 (1082)
Q Consensus 439 ~~~~~ 443 (1082)
+..|.
T Consensus 248 ~~~Q~ 252 (253)
T d3b60a1 248 HKMQF 252 (253)
T ss_dssp HHHTC
T ss_pred HHHCC
T ss_conf 99725
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=0 Score=440.96 Aligned_cols=240 Identities=45% Similarity=0.792 Sum_probs=224.9
Q ss_pred CCCCCEEEEEEEEECCCCC-CCCCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHHCCCCCCCEEEECCEECCCCCHHHH
Q ss_conf 9877489997899889999-864101038874898999984998808999999970788997679998950788787888
Q 001411 201 KLAGQIEFSEVCFAYPSRP-HMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWL 279 (1082)
Q Consensus 201 ~~~~~i~~~~v~~~y~~~~-~~~l~~is~~i~~G~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~i~g~~~~~~~~~~~ 279 (1082)
+..+.|+++||+|+|++.+ ..+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.+||+++..++..++
T Consensus 7 ~~~g~I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~li~gl~~p~~G~I~i~g~~i~~~~~~~~ 86 (251)
T d1jj7a_ 7 HLEGLVQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTGGQLLLDGKPLPQYEHRYL 86 (251)
T ss_dssp CCCCCEEEEEEEECCTTSTTCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHH
T ss_pred CCCCEEEEEEEEEECCCCCCCEEEECEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCHHHHHHH
T ss_conf 65336999998998899999976744389984998999999999849999999861437876899889985311013788
Q ss_pred HHHCEEECCCCCCCHHCHHHHHHCCCC-CCCHHHHHHHHHHHCHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHC
Q ss_conf 411358736777672209998833999-9999999999999544988862998755423589998996899999999860
Q 001411 280 REQMGLVSQEPALFATSIANNILLGKE-DASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAV 358 (1082)
Q Consensus 280 ~~~i~~v~Q~~~l~~~ti~~ni~~~~~-~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqrialARal 358 (1082)
|++++||+|+|++|++|++||+.++.. .....++..+++.+++.+++..+|+|+++.+++.|.+||||||||++||||+
T Consensus 87 r~~i~~v~Q~~~lf~~tv~eni~~g~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~i~~~~~~LSGGqkQRvaiARal 166 (251)
T d1jj7a_ 87 HRQVAAVGQEPQVFGRSLQENIAYGLTQKPTMEEITAAAVKSGAHSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARAL 166 (251)
T ss_dssp HHHEEEECSSCCCCSSBHHHHHHCSCSSCCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCCSSCSSSCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCHHHCEEEEEEECC
T ss_conf 87765404565002763465545421013027889999999989999985612111367516766895470489986044
Q ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCC--CCEEEEECCCCCCCCCCCEEEEEECCEEEEECCCHHHHHCCCHHH
Q ss_conf 569976577175458898979999999997709--973999804943001389799994978988417103220083259
Q 001411 359 LRNPKILLLDEATSALDAESELIVQRALEKIMS--NRTTIVVAHRLSTVRDVDTIMVLKNGQVVESGTHVDLISKGGEYA 436 (1082)
Q Consensus 359 ~~~~~illlDEpts~lD~~~~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~ 436 (1082)
+++|+|++||||||+||+.++..+++.+.++.+ ++|+|+||||++.+..||+|++|++|++++.|+|++++++++.|+
T Consensus 167 ~~~p~ililDEpTs~LD~~~~~~i~~~l~~l~~~~~~Tvi~itH~l~~~~~aDrI~vl~~G~iv~~Gt~~eLl~~~~~y~ 246 (251)
T d1jj7a_ 167 IRKPCVLILDDATSALDANSQLQVEQLLYESPERYSRSVLLITQHLSLVEQADHILFLEGGAIREGGTHQQLMEKKGCYW 246 (251)
T ss_dssp TTCCSEEEEESTTTTCCHHHHHHHHHHHHTCGGGGGCEEEEECSCHHHHHTCSEEEEEETTEEEEEECHHHHHHHTSHHH
T ss_pred CCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHCCEEEEEECCEEEEECCHHHHHHCCCHHH
T ss_conf 56870787167576568536899999999976506989999959799998599999998999999889999985975889
Q ss_pred HHHH
Q ss_conf 9998
Q 001411 437 ALVN 440 (1082)
Q Consensus 437 ~~~~ 440 (1082)
+|++
T Consensus 247 ~l~~ 250 (251)
T d1jj7a_ 247 AMVQ 250 (251)
T ss_dssp HHHC
T ss_pred HHHC
T ss_conf 9962
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Probab=100.00 E-value=0 Score=440.88 Aligned_cols=236 Identities=46% Similarity=0.750 Sum_probs=224.3
Q ss_pred EEEEEEEEECCCCCCCCCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHHCCCCCCCEEEECCEECCCCCHHHHHHHCEE
Q ss_conf 89997899889999864101038874898999984998808999999970788997679998950788787888411358
Q 001411 206 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGL 285 (1082)
Q Consensus 206 i~~~~v~~~y~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~i~g~~~~~~~~~~~~~~i~~ 285 (1082)
|+++||+|+|++. +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++.+++...+|++|+|
T Consensus 2 le~knvsf~Y~~~-~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 80 (242)
T d1mv5a_ 2 LSARHVDFAYDDS-EQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIGF 80 (242)
T ss_dssp EEEEEEEECSSSS-SCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCCE
T ss_pred EEEEEEEEECCCC-CCEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEECCEEECCCCHHHHHHHEEE
T ss_conf 7999889987999-841422589985999999999999979999999999609898779889988442467888743679
Q ss_pred ECCCCCCCHHCHHHHHHCCCC-CCCHHHHHHHHHHHCHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCE
Q ss_conf 736777672209998833999-9999999999999544988862998755423589998996899999999860569976
Q 001411 286 VSQEPALFATSIANNILLGKE-DASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKI 364 (1082)
Q Consensus 286 v~Q~~~l~~~ti~~ni~~~~~-~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqrialARal~~~~~i 364 (1082)
|+|+|++|++|++||+.++.. ...+++++.+++.+.+.+++..+|+++++.++++|.+|||||||||+||||++++|+|
T Consensus 81 v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~LSGGqkQRv~iARal~~~p~i 160 (242)
T d1mv5a_ 81 VSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKI 160 (242)
T ss_dssp ECCSSCCCCEEHHHHTTSCTTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSE
T ss_pred ECCCCCCCCCCHHHHEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCE
T ss_conf 75665457853454301244555423567789999975554203742101523687898799999999999998529989
Q ss_pred EEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCEEEEEECCEEEEECCCHHHHHCCCHHHHHHHHH
Q ss_conf 577175458898979999999997709973999804943001389799994978988417103220083259999853
Q 001411 365 LLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRDVDTIMVLKNGQVVESGTHVDLISKGGEYAALVNLQ 442 (1082)
Q Consensus 365 lllDEpts~lD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~ 442 (1082)
++||||||+||+.++..+++.++++.+++|+|+|||+++.+..||+|++|++|++++.|++++++++++.|++++..|
T Consensus 161 lilDEpts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~~~D~i~vl~~G~iv~~G~~~eLl~~~~~y~~l~~~Q 238 (242)
T d1mv5a_ 161 LMLDEATASLDSESESMVQKALDSLMKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVATHPLYAKYVSEQ 238 (242)
T ss_dssp EEEECCSCSSCSSSCCHHHHHHHHHHTTSEEEEECCSHHHHHHCSEEEEEETTEECCCSCHHHHHHHCHHHHHHHHCC
T ss_pred EEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHCCEEEEEECCEEEEECCHHHHHHCCHHHHHHHHHH
T ss_conf 996588655698899999887888717998999978799998499999998999999999999986896999999998
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=0 Score=410.95 Aligned_cols=221 Identities=29% Similarity=0.472 Sum_probs=201.0
Q ss_pred CCCEEEEEEEEECCCCCCCCCCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHHHHC
Q ss_conf 56499986888889999965301203876289589998389997788999881326698418999995079999788733
Q 001411 832 KGNIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRR 911 (1082)
Q Consensus 832 ~~~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~iaIvG~SGsGKSTL~~lL~gl~~p~~G~I~idg~di~~~~~~~lr~ 911 (1082)
...|+|++++|. ..|+|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||
T Consensus 36 ~~~i~~~~~~~~-----g~pvL~~isl~i~~Ge~vaivG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g------------- 97 (281)
T d1r0wa_ 36 ENNVSFSHLCLV-----GNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSG------------- 97 (281)
T ss_dssp ----CHHHHHHT-----TCEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEECCS-------------
T ss_pred CCCEEEEECCCC-----CCEEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECC-------------
T ss_conf 896799976989-----97677375999859999999989998299999999579747882899999-------------
Q ss_pred CEEEECCCCCCCCCCHHHHHCCCCCCCCHHHHHHHHHHHCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCC
Q ss_conf 32888366766642478883239988799999999999008899962746544422699998992499999999997039
Q 001411 912 KIGLVQQEPALFSTTIYENIKYGNEDASEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKN 991 (1082)
Q Consensus 912 ~i~~vpQ~~~lf~gTIreNl~~~~~~~~d~ei~~a~~~a~l~~~I~~lp~gldt~i~e~g~~LSgGQkQrlaLARAll~~ 991 (1082)
+++|+||++.+|++||+||+.++. ..++...+.+++.+.+..++..+|+++++.+++.|.+||||||||++||||++++
T Consensus 98 ~i~~v~Q~~~l~~~tv~eni~~~~-~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~LSgGqkQRv~lARaL~~~ 176 (281)
T d1r0wa_ 98 RVSFCSQFSWIMPGTIKENIIFGV-SYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKD 176 (281)
T ss_dssp CEEEECSSCCCCSEEHHHHHTTTS-CCCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTCTTSCHHHHHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCCCEEECCCCCCC-CCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHC
T ss_conf 999981643026760321420333-4560579999999776999984612332355554237799999999999999869
Q ss_pred CCEEEEECCCCCCCHHHHHHHHHHH-HHHCCCCEEEEEECCCHHHHCCCEEEEEECCEEEEECCHHHHHHHCCCHHHHHH
Q ss_conf 9877851777898979899999999-986189649998069225530588999959889882596789510052489999
Q 001411 992 PSILLLDEATSALDTASENLIQEAL-DKLMEGRTTIMVAHRLSTIRNADKIAVLQQGKVAEIGSHEQLLRKENGIYKQLI 1070 (1082)
Q Consensus 992 p~ILiLDEpTS~LD~~te~~I~~~L-~~~~~~~TvI~IsHrl~~i~~~DrI~vl~~G~ive~G~~~eLl~~~~~~y~~l~ 1070 (1082)
|+|||||||||+||+.++..|++.+ .....++|+|+||||++.++.||||++|++|+|++.|+|+||++ ..+.|++.+
T Consensus 177 p~illLDEPts~LD~~~~~~i~~~~~~~~~~~~tvi~itH~~~~l~~aDrI~vl~~G~i~~~Gt~~eL~~-~~~~~~~~~ 255 (281)
T d1r0wa_ 177 ADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSKMEHLRKADKILILHQGSSYFYGTFSELQS-LRPDFSSKL 255 (281)
T ss_dssp CSEEEEESCCCSSCHHHHHHHHHHCCCCCTTTSEEEEECSCHHHHHTCSEEEEEETTEEEEEECHHHHHH-HCHHHHHHH
T ss_pred CCCHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHCCEEEEEECCEEEEECCHHHHHC-CCCHHHHHH
T ss_conf 6351333855448989999999999988628999999925289998599999998999999878999960-594899987
Q ss_pred HH
Q ss_conf 98
Q 001411 1071 RL 1072 (1082)
Q Consensus 1071 ~~ 1072 (1082)
..
T Consensus 256 ~~ 257 (281)
T d1r0wa_ 256 MG 257 (281)
T ss_dssp HT
T ss_pred CC
T ss_conf 29
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=100.00 E-value=2.7e-43 Score=376.83 Aligned_cols=223 Identities=30% Similarity=0.499 Sum_probs=189.7
Q ss_pred CEEEEEEEEECCCCCCCCCCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHHHHCCE
Q ss_conf 49998688888999996530120387628958999838999778899988132669841899999507999978873332
Q 001411 834 NIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRKI 913 (1082)
Q Consensus 834 ~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~iaIvG~SGsGKSTL~~lL~gl~~p~~G~I~idg~di~~~~~~~lr~~i 913 (1082)
.|+++||+++|+ +..+|+||||+|++||++||+||||||||||+++|.|+++|++|+|+++|+|+++.+.. |+++
T Consensus 6 ~I~v~nlsk~yg---~~~al~~vsl~v~~Ge~~~liGpsGaGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~~~~--~r~i 80 (239)
T d1v43a3 6 EVKLENLTKRFG---NFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPK--DRNI 80 (239)
T ss_dssp CEEEEEEEEEET---TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGG--GGTE
T ss_pred EEEEEEEEEEEC---CEEEECCEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEECCCCCCC--CCEE
T ss_conf 499987999999---99998130678879989999999998299999999758999878799916413547700--0158
Q ss_pred EEECCCCCCCC-CCHHHHHCCCCC--CCCHHHHHHHHHHHCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCC
Q ss_conf 88836676664-247888323998--879999999999900889996274654442269999899249999999999703
Q 001411 914 GLVQQEPALFS-TTIYENIKYGNE--DASEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILK 990 (1082)
Q Consensus 914 ~~vpQ~~~lf~-gTIreNl~~~~~--~~~d~ei~~a~~~a~l~~~I~~lp~gldt~i~e~g~~LSgGQkQrlaLARAll~ 990 (1082)
|||||++.+|+ .||+||+.++.. ..+.+++.+.+ .++.+.+ |++...+.....||||||||++|||||+.
T Consensus 81 g~v~Q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~-----~~~l~~~--~l~~~~~~~~~~LSGGq~QRvaiAraL~~ 153 (239)
T d1v43a3 81 SMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRV-----RWAAELL--QIEELLNRYPAQLSGGQRQRVAVARAIVV 153 (239)
T ss_dssp EEEEC------CCCHHHHHHTTCC--CCCHHHHHHHH-----HHHHHHT--TCGGGTTSCTTTCCSSCHHHHHHHHHHTT
T ss_pred EEEEECHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHH-----HHHHHHC--CCHHHHCCCHHHCCHHHHHHHHHHHHHCC
T ss_conf 9980033534222099999999987399999999999-----9999875--98556609954699999889999766404
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHC-C-CCEEEEEECCCHHHHC-CCEEEEEECCEEEEECCHHHHHHHCCCHHH
Q ss_conf 998778517778989798999999999861-8-9649998069225530-588999959889882596789510052489
Q 001411 991 NPSILLLDEATSALDTASENLIQEALDKLM-E-GRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGSHEQLLRKENGIYK 1067 (1082)
Q Consensus 991 ~p~ILiLDEpTS~LD~~te~~I~~~L~~~~-~-~~TvI~IsHrl~~i~~-~DrI~vl~~G~ive~G~~~eLl~~~~~~y~ 1067 (1082)
+|+||+||||||+||+.+...|++.++++. + |+|+|+|||+++.+.. ||||++|++|+|++.|+|+++++++...|.
T Consensus 154 ~P~iLllDEPts~LD~~~~~~i~~ll~~l~~~~g~tii~vTHd~~~a~~~~dri~vm~~G~iv~~G~~~el~~~P~~~~~ 233 (239)
T d1v43a3 154 EPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLRPNSVFV 233 (239)
T ss_dssp CCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHCCSBHHH
T ss_pred CCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEECCHHHHHHCCCCHHH
T ss_conf 99824306886668989998999999999873198079994899999986999999989999998599999868999899
Q ss_pred H
Q ss_conf 9
Q 001411 1068 Q 1068 (1082)
Q Consensus 1068 ~ 1068 (1082)
+
T Consensus 234 ~ 234 (239)
T d1v43a3 234 A 234 (239)
T ss_dssp H
T ss_pred H
T ss_conf 9
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.3e-43 Score=379.50 Aligned_cols=218 Identities=31% Similarity=0.501 Sum_probs=191.0
Q ss_pred EEEEEEEEECCCCCCCCCCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHHHHCCEE
Q ss_conf 99986888889999965301203876289589998389997788999881326698418999995079999788733328
Q 001411 835 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRKIG 914 (1082)
Q Consensus 835 I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~iaIvG~SGsGKSTL~~lL~gl~~p~~G~I~idg~di~~~~~~~lr~~i~ 914 (1082)
|+++||+++|+ +..+|+||||+|++||++||+||||||||||++++.|+++|++|+|+++|.++.+.+.. |++|+
T Consensus 1 Iev~nv~k~yg---~~~~l~~isl~i~~Gei~~liGpsGsGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~~~~--~r~ig 75 (232)
T d2awna2 1 VQLQNVTKAWG---EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPA--ERGVG 75 (232)
T ss_dssp EEEEEEEEEET---TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEESSSCCTTSCGG--GTCEE
T ss_pred CEEEEEEEEEC---CEEEEEEEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEECCCCCHH--HCEEE
T ss_conf 99999999989---99998111778869989999989998299999999658788888899999977888644--43222
Q ss_pred EECCCCCCCCC-CHHHHHCCCCCC--C----CHHHHHHHHHHHCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 88366766642-478883239988--7----9999999999900889996274654442269999899249999999999
Q 001411 915 LVQQEPALFST-TIYENIKYGNED--A----SEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARA 987 (1082)
Q Consensus 915 ~vpQ~~~lf~g-TIreNl~~~~~~--~----~d~ei~~a~~~a~l~~~I~~lp~gldt~i~e~g~~LSgGQkQrlaLARA 987 (1082)
||||++.+|+. |++||+.++... . .++.+.++++..++.++.++.| ..||||||||++||||
T Consensus 76 ~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~-----------~~LSGGqkQRvaiAra 144 (232)
T d2awna2 76 MVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKP-----------KALSGGQRQRVAIGRT 144 (232)
T ss_dssp EECSSCCC---------------------CHHHHHHHHHHHHC--------------------------------CHHHH
T ss_pred EECCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHCCH-----------HHCCHHHHHHHHHHHH
T ss_conf 34334202643337889789998759988999999999997578865664896-----------5699999999999999
Q ss_pred HCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHC--CCCEEEEEECCCHHHHC-CCEEEEEECCEEEEECCHHHHHHHCCC
Q ss_conf 703998778517778989798999999999861--89649998069225530-588999959889882596789510052
Q 001411 988 ILKNPSILLLDEATSALDTASENLIQEALDKLM--EGRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGSHEQLLRKENG 1064 (1082)
Q Consensus 988 ll~~p~ILiLDEpTS~LD~~te~~I~~~L~~~~--~~~TvI~IsHrl~~i~~-~DrI~vl~~G~ive~G~~~eLl~~~~~ 1064 (1082)
|+.+|++|+|||||++||+.+...|++.|+++. .++|+|++||+++.+.. ||||++|++|+|++.|+|+|+++++..
T Consensus 145 L~~~P~illlDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~~a~~~~dri~vm~~G~iv~~G~~~el~~~P~~ 224 (232)
T d2awna2 145 LVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYPAD 224 (232)
T ss_dssp HHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCSB
T ss_pred HHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEEECHHHHHHCCCC
T ss_conf 70399889975888788988998999999999874298799994899999996999999979999998089999738999
Q ss_pred HHHH
Q ss_conf 4899
Q 001411 1065 IYKQ 1068 (1082)
Q Consensus 1065 ~y~~ 1068 (1082)
.|.+
T Consensus 225 ~~v~ 228 (232)
T d2awna2 225 RFVA 228 (232)
T ss_dssp HHHH
T ss_pred HHHH
T ss_conf 7999
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Probab=100.00 E-value=2.4e-43 Score=377.26 Aligned_cols=216 Identities=33% Similarity=0.545 Sum_probs=188.8
Q ss_pred EEEEEEEEECCCCCCCCCCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHHHHCCEE
Q ss_conf 99986888889999965301203876289589998389997788999881326698418999995079999788733328
Q 001411 835 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRKIG 914 (1082)
Q Consensus 835 I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~iaIvG~SGsGKSTL~~lL~gl~~p~~G~I~idg~di~~~~~~~lr~~i~ 914 (1082)
|+++||+++|+. .+|+||||+|++||.+||+||||||||||+++|.|+.+|++|+|++||.|+.+.+.. |++++
T Consensus 2 i~v~nlsk~y~~----~aL~~vs~~i~~Ge~~~liGpsGaGKSTll~~l~Gl~~p~sG~I~~~G~~i~~~~~~--~r~ig 75 (229)
T d3d31a2 2 IEIESLSRKWKN----FSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPE--KHDIA 75 (229)
T ss_dssp EEEEEEEEECSS----CEEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCHH--HHTCE
T ss_pred EEEEEEEEEECC----EEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHH--HHCCE
T ss_conf 899989999499----788433789879989999989998299999999647688878899956734652165--74056
Q ss_pred EECCCCCCCCC-CHHHHHCCCC---CCCCHHHHHHHHHHHCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCC
Q ss_conf 88366766642-4788832399---8879999999999900889996274654442269999899249999999999703
Q 001411 915 LVQQEPALFST-TIYENIKYGN---EDASEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILK 990 (1082)
Q Consensus 915 ~vpQ~~~lf~g-TIreNl~~~~---~~~~d~ei~~a~~~a~l~~~I~~lp~gldt~i~e~g~~LSgGQkQrlaLARAll~ 990 (1082)
||||++.+|+. ||+||+.++. .....+++.++++..++.++.++ ....||||||||++|||||+.
T Consensus 76 ~v~Q~~~l~~~~tV~enl~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LSGG~~QRvaiAraL~~ 144 (229)
T d3d31a2 76 FVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHLLDR-----------NPLTLSGGEQQRVALARALVT 144 (229)
T ss_dssp EECTTCCCCTTSCHHHHHHHHHHHHCCCCHHHHHHHHHHTTCTTTTTS-----------CGGGSCHHHHHHHHHHHHTTS
T ss_pred EECCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHCCHHHHHC-----------CHHHCCHHHHCCHHHHHHHHC
T ss_conf 151211117466577888887764055389999999998256555758-----------955479998401403043443
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHC--CCCEEEEEECCCHHHHC-CCEEEEEECCEEEEECCHHHHHHHCCCHHH
Q ss_conf 998778517778989798999999999861--89649998069225530-588999959889882596789510052489
Q 001411 991 NPSILLLDEATSALDTASENLIQEALDKLM--EGRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGSHEQLLRKENGIYK 1067 (1082)
Q Consensus 991 ~p~ILiLDEpTS~LD~~te~~I~~~L~~~~--~~~TvI~IsHrl~~i~~-~DrI~vl~~G~ive~G~~~eLl~~~~~~y~ 1067 (1082)
+|++|+||||||+||+.+...+++.|+++. .+.|+|+|||+++.+.. ||||++|.+|++++.|+|+++++++...|.
T Consensus 145 ~P~iLllDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~vtHd~~~~~~~~drv~vm~~G~iv~~g~~~el~~~P~~~~v 224 (229)
T d3d31a2 145 NPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEIFEKPVEGRV 224 (229)
T ss_dssp CCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHHHHHHHCSEEEEESSSCEEEEECHHHHHSSCCTTHH
T ss_pred CCCCEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHCCEEEEEECCEEEEECCHHHHHHCCCCHHH
T ss_conf 67714434787679989999999999999864796899974999999996999999979999998699999868998799
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Probab=100.00 E-value=1.7e-43 Score=378.48 Aligned_cols=221 Identities=28% Similarity=0.483 Sum_probs=189.7
Q ss_pred CEEEEEEEEECCCCCCCCCCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHH----H
Q ss_conf 499986888889999965301203876289589998389997788999881326698418999995079999788----7
Q 001411 834 NIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRS----L 909 (1082)
Q Consensus 834 ~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~iaIvG~SGsGKSTL~~lL~gl~~p~~G~I~idg~di~~~~~~~----l 909 (1082)
.|+++||+++|+ +..+|+||||+|++||++||+||||||||||+++|.|+++|++|+|.++|.++...+... .
T Consensus 3 ~i~v~nl~k~yg---~~~al~~vsl~i~~Ge~~~liG~sGaGKSTll~~i~gl~~p~sG~I~~~g~~i~~~~~~~~~~~~ 79 (240)
T d1g2912 3 GVRLVDVWKVFG---EVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPK 79 (240)
T ss_dssp EEEEEEEEEEET---TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGG
T ss_pred CEEEEEEEEEEC---CEEEECCEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEEECCCCHHHHCCCC
T ss_conf 189986999989---99998560668869989999999998099999999648788989899999980356644424532
Q ss_pred HCCEEEECCCCCCCCC-CHHHHHCCCCC--CCCH----HHHHHHHHHHCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 3332888366766642-47888323998--8799----999999999008899962746544422699998992499999
Q 001411 910 RRKIGLVQQEPALFST-TIYENIKYGNE--DASE----IELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRV 982 (1082)
Q Consensus 910 r~~i~~vpQ~~~lf~g-TIreNl~~~~~--~~~d----~ei~~a~~~a~l~~~I~~lp~gldt~i~e~g~~LSgGQkQrl 982 (1082)
|+.++||||++.+|+. ||+||+.++.. ..+. +.+.+.++.+++.++.++ ....||||||||+
T Consensus 80 ~r~ig~v~Q~~~L~~~ltV~eni~~~~~~~~~~~~e~~~~v~~~l~~~~l~~~~~~-----------~p~~LSGGqkQRv 148 (240)
T d1g2912 80 DRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNR-----------KPRELSGGQRQRV 148 (240)
T ss_dssp GSSEEEECSCCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTTC-----------CGGGSCHHHHHHH
T ss_pred CCCCEECCCCHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHCC-----------CHHHCCHHHHHHH
T ss_conf 25512002212223101166763306877299989999999999987599667629-----------9334999999999
Q ss_pred HHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHC-C-CCEEEEEECCCHHHHC-CCEEEEEECCEEEEECCHHHHH
Q ss_conf 99999703998778517778989798999999999861-8-9649998069225530-5889999598898825967895
Q 001411 983 AIARAILKNPSILLLDEATSALDTASENLIQEALDKLM-E-GRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGSHEQLL 1059 (1082)
Q Consensus 983 aLARAll~~p~ILiLDEpTS~LD~~te~~I~~~L~~~~-~-~~TvI~IsHrl~~i~~-~DrI~vl~~G~ive~G~~~eLl 1059 (1082)
+|||||+.+|++|+|||||++||+.+...|++.|+++. + |.|+|+|||+++.+.. ||||++|++|+|++.|+|+|++
T Consensus 149 ~IAraL~~~P~iLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHd~~~~~~~~drv~vm~~G~iv~~G~~~el~ 228 (240)
T d1g2912 149 ALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEVY 228 (240)
T ss_dssp HHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred HHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHCCEEEEEECCEEEEECCHHHHH
T ss_conf 99999826998898258876569899989999999998636988999959999999969999999899999985999998
Q ss_pred HHCCCHHHH
Q ss_conf 100524899
Q 001411 1060 RKENGIYKQ 1068 (1082)
Q Consensus 1060 ~~~~~~y~~ 1068 (1082)
.+....|.+
T Consensus 229 ~~P~~~~~~ 237 (240)
T d1g2912 229 DKPANTFVA 237 (240)
T ss_dssp HSCSBHHHH
T ss_pred HCCCCHHHH
T ss_conf 289998989
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=100.00 E-value=2.3e-43 Score=377.37 Aligned_cols=223 Identities=30% Similarity=0.488 Sum_probs=190.2
Q ss_pred CEEEEEEEEECCCCCCCCCCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCC---HHHHH
Q ss_conf 499986888889999965301203876289589998389997788999881326698418999995079999---78873
Q 001411 834 NIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLN---LRSLR 910 (1082)
Q Consensus 834 ~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~iaIvG~SGsGKSTL~~lL~gl~~p~~G~I~idg~di~~~~---~~~lr 910 (1082)
.|+++||+++|+.. +..+|+||||+|++||++||+||||||||||+++|.|+++|++|+|++||+++...+ ...+|
T Consensus 3 ~i~v~nlsk~y~~g-~~~aL~~vsl~i~~Ge~~~iiG~sGsGKSTll~~i~gl~~p~~G~I~~~g~~i~~~~~~~~~~~r 81 (242)
T d1oxxk2 3 RIIVKNVSKVFKKG-KVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPED 81 (242)
T ss_dssp CEEEEEEEEEEGGG-TEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGGG
T ss_pred EEEEEEEEEEECCC-CEEEEECEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEEEECCCHHHCCHHH
T ss_conf 89997579998899-98998040789879989999989998099999999758688874599999995137311153120
Q ss_pred CCEEEECCCCCCCCC-CHHHHHCCCCC--CCCH----HHHHHHHHHHCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 332888366766642-47888323998--8799----9999999990088999627465444226999989924999999
Q 001411 911 RKIGLVQQEPALFST-TIYENIKYGNE--DASE----IELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVA 983 (1082)
Q Consensus 911 ~~i~~vpQ~~~lf~g-TIreNl~~~~~--~~~d----~ei~~a~~~a~l~~~I~~lp~gldt~i~e~g~~LSgGQkQrla 983 (1082)
++++||||++.+|+. ||+||+.++.. ..+. +.+.++++.+++.++.++ ....||||||||++
T Consensus 82 r~ig~vfQ~~~L~p~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~-----------~p~~LSGGqkQRva 150 (242)
T d1oxxk2 82 RKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNH-----------FPRELSGAQQQRVA 150 (242)
T ss_dssp SCEEEEETTSCCCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTTS-----------CGGGSCHHHHHHHH
T ss_pred CCCEEEECCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCHHHHHHC-----------CHHHCCHHHHHHHH
T ss_conf 4514773043346666577776655676137999999999999866591766648-----------95459999985899
Q ss_pred HHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHC-C-CCEEEEEECCCHHHHC-CCEEEEEECCEEEEECCHHHHHH
Q ss_conf 9999703998778517778989798999999999861-8-9649998069225530-58899995988988259678951
Q 001411 984 IARAILKNPSILLLDEATSALDTASENLIQEALDKLM-E-GRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGSHEQLLR 1060 (1082)
Q Consensus 984 LARAll~~p~ILiLDEpTS~LD~~te~~I~~~L~~~~-~-~~TvI~IsHrl~~i~~-~DrI~vl~~G~ive~G~~~eLl~ 1060 (1082)
|||||+.+|++|+|||||++||+.+...+++.|+++. + +.|+|+|||+++.+.. ||||++|++|+|++.|+|+++++
T Consensus 151 iARaL~~~P~llllDEPt~~LD~~~~~~i~~~i~~l~~~~g~tvi~vTHd~~~~~~~~dri~vm~~G~iv~~g~~~el~~ 230 (242)
T d1oxxk2 151 LARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDLYD 230 (242)
T ss_dssp HHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred HHHHHHHCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEECCHHHHHH
T ss_conf 87577604661454478667998998899899999986359879999799999999699999998999999869999986
Q ss_pred HCCCHHHH
Q ss_conf 00524899
Q 001411 1061 KENGIYKQ 1068 (1082)
Q Consensus 1061 ~~~~~y~~ 1068 (1082)
.+...|.+
T Consensus 231 ~P~~~~~~ 238 (242)
T d1oxxk2 231 NPVSIQVA 238 (242)
T ss_dssp SCSSHHHH
T ss_pred CCCCHHHH
T ss_conf 89997998
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=2e-43 Score=377.98 Aligned_cols=222 Identities=33% Similarity=0.499 Sum_probs=188.9
Q ss_pred EEEEEEEEECCCCCC-CCCCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHH---HH
Q ss_conf 999868888899999-65301203876289589998389997788999881326698418999995079999788---73
Q 001411 835 IELRNVSFKYPVRPD-ITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRS---LR 910 (1082)
Q Consensus 835 I~~~~Vsf~Y~~~~~-~~vL~~isl~I~~Ge~iaIvG~SGsGKSTL~~lL~gl~~p~~G~I~idg~di~~~~~~~---lr 910 (1082)
|+++||+++|+.... ..+|+||||+|++||.+||+||||||||||+++|.|+.+|++|+|.++|.|+...+... +|
T Consensus 2 i~v~nlsk~y~~~~~~~~al~~vsl~i~~Ge~~~iiG~sGsGKSTLl~~i~Gl~~p~sG~I~~~g~~i~~~~~~~~~~~r 81 (240)
T d3dhwc1 2 IKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKAR 81 (240)
T ss_dssp EEEEEEEEEEECSSCEEEEEEEEEEEECSSCEEEEEESTTSSHHHHHHHHTTSSCCSEEEEEETTEEECTTCHHHHHHHH
T ss_pred EEEEEEEEEECCCCEEEEEEECEEEEECCCCEEEEECCCCCCHHHHHHHHCCCCCCCCCCEEECCEEEEECCHHHHHHHH
T ss_conf 79982799969998148986150578869979999899989888999987588636677328867685208755511554
Q ss_pred CCEEEECCCCCCCCC-CHHHHHCCCC----CCCC--HHHHHHHHHHHCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 332888366766642-4788832399----8879--99999999990088999627465444226999989924999999
Q 001411 911 RKIGLVQQEPALFST-TIYENIKYGN----EDAS--EIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVA 983 (1082)
Q Consensus 911 ~~i~~vpQ~~~lf~g-TIreNl~~~~----~~~~--d~ei~~a~~~a~l~~~I~~lp~gldt~i~e~g~~LSgGQkQrla 983 (1082)
++++||||++.+|+. ||+||+.++. .... .+.+.++++.+++.++.++ ....||||||||++
T Consensus 82 r~ig~VfQ~~~l~~~~tv~eni~~~l~~~~~~~~~~~~~v~~~L~~vgL~~~~~~-----------~~~~LSGG~~QRva 150 (240)
T d3dhwc1 82 RQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDS-----------YPSNLSGGQKQRVA 150 (240)
T ss_dssp HHEEECCSSCCCCTTSBHHHHHHHHHHTTTCCTTHHHHHHHHHHHHHSTTTTTSS-----------CBSCCCHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHC-----------CHHHCCHHHHHHHH
T ss_conf 1664302252227996499999999998499989999999999997699035548-----------94349999998999
Q ss_pred HHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHC-C-CCEEEEEECCCHHHHC-CCEEEEEECCEEEEECCHHHHHH
Q ss_conf 9999703998778517778989798999999999861-8-9649998069225530-58899995988988259678951
Q 001411 984 IARAILKNPSILLLDEATSALDTASENLIQEALDKLM-E-GRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGSHEQLLR 1060 (1082)
Q Consensus 984 LARAll~~p~ILiLDEpTS~LD~~te~~I~~~L~~~~-~-~~TvI~IsHrl~~i~~-~DrI~vl~~G~ive~G~~~eLl~ 1060 (1082)
||||++.+|++|||||||++||+.+...|++.|+++. + +.|+|+|||+++.+.. ||||++|++|+|++.|+++++++
T Consensus 151 iAraL~~~P~lLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHdl~~~~~~~dri~vl~~G~iv~~G~~~ei~~ 230 (240)
T d3dhwc1 151 IARALASNPKVLLCDEATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVFS 230 (240)
T ss_dssp HHHHHHTCCSEEEEESGGGSSCHHHHHHHHHHHHHHHHHHCCEEEEEBSCHHHHHHHCSEEEEEETTEEEEEEETTTTTC
T ss_pred HHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHCCEEEEEECCEEEEECCHHHHHH
T ss_conf 86401058986874465565898885679999999986469789998389999998699999997999999879999972
Q ss_pred HCCCHHH
Q ss_conf 0052489
Q 001411 1061 KENGIYK 1067 (1082)
Q Consensus 1061 ~~~~~y~ 1067 (1082)
++...|.
T Consensus 231 ~P~~~~t 237 (240)
T d3dhwc1 231 HPKTPLA 237 (240)
T ss_dssp SSCCTTT
T ss_pred CCCCHHH
T ss_conf 8998577
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=1.8e-43 Score=378.37 Aligned_cols=219 Identities=29% Similarity=0.501 Sum_probs=197.7
Q ss_pred CCEEEEEEEEECCCCCCCCCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHHCCCCCCCEEEECCEECCCCCHHHHHHHC
Q ss_conf 74899978998899998641010388748989999849988089999999707889976799989507887878884113
Q 001411 204 GQIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQM 283 (1082)
Q Consensus 204 ~~i~~~~v~~~y~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~i~g~~~~~~~~~~~~~~i 283 (1082)
..++|+|++| .+ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++| ++
T Consensus 37 ~~i~~~~~~~--~g--~pvL~~isl~i~~Ge~vaivG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g-------------~i 99 (281)
T d1r0wa_ 37 NNVSFSHLCL--VG--NPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSG-------------RV 99 (281)
T ss_dssp ---CHHHHHH--TT--CEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEECCS-------------CE
T ss_pred CCEEEEECCC--CC--CEEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECC-------------EE
T ss_conf 9679997698--99--7677375999859999999989998299999999579747882899999-------------99
Q ss_pred EEECCCCCCCHHCHHHHHHCCCCCCCHHHHHHHHHHHCHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCC
Q ss_conf 58736777672209998833999999999999999954498886299875542358999899689999999986056997
Q 001411 284 GLVSQEPALFATSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPK 363 (1082)
Q Consensus 284 ~~v~Q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqrialARal~~~~~ 363 (1082)
+|++|++++|++|++||+.++.. ....++..+++.+.+..++..+|+++++.+++.|.+||||||||++|||||+++|+
T Consensus 100 ~~v~Q~~~l~~~tv~eni~~~~~-~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~LSgGqkQRv~lARaL~~~p~ 178 (281)
T d1r0wa_ 100 SFCSQFSWIMPGTIKENIIFGVS-YDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDAD 178 (281)
T ss_dssp EEECSSCCCCSEEHHHHHTTTSC-CCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTCTTSCHHHHHHHHHHHHHHSCCS
T ss_pred EEEECCCCCCCCEEECCCCCCCC-CCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCC
T ss_conf 99816430267603214203334-56057999999977699998461233235555423779999999999999986963
Q ss_pred EEEEECCCCCCCHHHHHHHHHH-HHHHCCCCEEEEECCCCCCCCCCCEEEEEECCEEEEECCCHHHHHCCCHHHHHHH
Q ss_conf 6577175458898979999999-9977099739998049430013897999949789884171032200832599998
Q 001411 364 ILLLDEATSALDAESELIVQRA-LEKIMSNRTTIVVAHRLSTVRDVDTIMVLKNGQVVESGTHVDLISKGGEYAALVN 440 (1082)
Q Consensus 364 illlDEpts~lD~~~~~~i~~~-l~~~~~~~tvi~vtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~ 440 (1082)
|++||||||+||+.++..+++. +.....++|+|+|||+++.+..||||++|++|++++.|+++|++...+.|...+.
T Consensus 179 illLDEPts~LD~~~~~~i~~~~~~~~~~~~tvi~itH~~~~l~~aDrI~vl~~G~i~~~Gt~~eL~~~~~~~~~~~~ 256 (281)
T d1r0wa_ 179 LYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSKMEHLRKADKILILHQGSSYFYGTFSELQSLRPDFSSKLM 256 (281)
T ss_dssp EEEEESCCCSSCHHHHHHHHHHCCCCCTTTSEEEEECSCHHHHHTCSEEEEEETTEEEEEECHHHHHHHCHHHHHHHH
T ss_pred CHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHCCEEEEEECCEEEEECCHHHHHCCCCHHHHHHC
T ss_conf 513338554489899999999999886289999999252899985999999989999998789999605948999872
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=2.2e-42 Score=369.22 Aligned_cols=223 Identities=31% Similarity=0.500 Sum_probs=189.9
Q ss_pred CEEEEEEEEECCCCCCCCCCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCC--------
Q ss_conf 499986888889999965301203876289589998389997788999881326698418999995079999--------
Q 001411 834 NIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLN-------- 905 (1082)
Q Consensus 834 ~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~iaIvG~SGsGKSTL~~lL~gl~~p~~G~I~idg~di~~~~-------- 905 (1082)
.|+++||+++|+ +..+|+||||+|++||++||+||||||||||+++|.|+++|++|+|++||.++...+
T Consensus 2 ~Lev~nl~k~yg---~~~al~~vs~~i~~GEi~~iiG~sGsGKSTLl~~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~ 78 (258)
T d1b0ua_ 2 KLHVIDLHKRYG---GHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKV 78 (258)
T ss_dssp CEEEEEEEEEET---TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEE
T ss_pred EEEEEEEEEEEC---CEEEECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEECCEEECCCCCCCHHCCC
T ss_conf 699997899989---99988150668869979999989998299999999747667899779999993367752000023
Q ss_pred -----HHHHHCCEEEECCCCCCCCC-CHHHHHCCC---CCCCCH----HHHHHHHHHHCHHHHH-HHCCCCCCCCCCCCC
Q ss_conf -----78873332888366766642-478883239---988799----9999999990088999-627465444226999
Q 001411 906 -----LRSLRRKIGLVQQEPALFST-TIYENIKYG---NEDASE----IELMKATKAANAHGFI-SRMPEGYQSHVGDRG 971 (1082)
Q Consensus 906 -----~~~lr~~i~~vpQ~~~lf~g-TIreNl~~~---~~~~~d----~ei~~a~~~a~l~~~I-~~lp~gldt~i~e~g 971 (1082)
...+|++++||+|++.+|+. ||.||+.++ ....+. +.+.++++.+++.+.. .+.|
T Consensus 79 ~~~~~~~~~r~~ig~vfQ~~~l~~~~tv~env~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~p----------- 147 (258)
T d1b0ua_ 79 ADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYP----------- 147 (258)
T ss_dssp SCHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSCG-----------
T ss_pred CCHHHHHHHHCCEEEEEECHHHCCCHHCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHCCCC-----------
T ss_conf 517679997454489983323141101021365657876299989999999999998299524430682-----------
Q ss_pred CCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHC-CCCEEEEEECCCHHHHC-CCEEEEEECCEE
Q ss_conf 9899249999999999703998778517778989798999999999861-89649998069225530-588999959889
Q 001411 972 VQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLM-EGRTTIMVAHRLSTIRN-ADKIAVLQQGKV 1049 (1082)
Q Consensus 972 ~~LSgGQkQrlaLARAll~~p~ILiLDEpTS~LD~~te~~I~~~L~~~~-~~~TvI~IsHrl~~i~~-~DrI~vl~~G~i 1049 (1082)
..|||||+||++||||+..+|++|||||||++||+.+...|++.|+++. +|+|+|+|||+++.+.. ||||++|.+|+|
T Consensus 148 ~~LSGG~~QRv~iAraL~~~P~llilDEPT~gLD~~~~~~i~~ll~~l~~~g~til~vtHdl~~~~~~adri~vm~~G~i 227 (258)
T d1b0ua_ 148 VHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKI 227 (258)
T ss_dssp GGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHHHHHHHCSEEEEEETTEE
T ss_pred CCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHCCEEEEEECCEE
T ss_conf 20567788898999998439987885245556887888899876554103688338994899999986999999979999
Q ss_pred EEECCHHHHHHHCCCHHHHHH
Q ss_conf 882596789510052489999
Q 001411 1050 AEIGSHEQLLRKENGIYKQLI 1070 (1082)
Q Consensus 1050 ve~G~~~eLl~~~~~~y~~l~ 1070 (1082)
++.|+|+|+++++...|.+-+
T Consensus 228 v~~g~~~ev~~~P~~~~~~~l 248 (258)
T d1b0ua_ 228 EEEGDPEQVFGNPQSPRLQQF 248 (258)
T ss_dssp EEEECHHHHHHSCCSHHHHHH
T ss_pred EEECCHHHHHHCCCCHHHHHH
T ss_conf 998499999838999999998
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=2e-42 Score=369.43 Aligned_cols=214 Identities=36% Similarity=0.531 Sum_probs=175.4
Q ss_pred EEEEEEEEECCCCCC-CCCCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHHH----
Q ss_conf 999868888899999-653012038762895899983899977889998813266984189999950799997887----
Q 001411 835 IELRNVSFKYPVRPD-ITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSL---- 909 (1082)
Q Consensus 835 I~~~~Vsf~Y~~~~~-~~vL~~isl~I~~Ge~iaIvG~SGsGKSTL~~lL~gl~~p~~G~I~idg~di~~~~~~~l---- 909 (1082)
|+++||+++|+.... ..+|+||||+|++||.+||+||||||||||+++|.|+++|++|+|++||.++..++...+
T Consensus 2 I~i~nlsk~y~~~~~~~~al~~isl~i~~Ge~~~iiG~sGsGKSTLl~~i~gl~~p~sG~I~~~g~~i~~~~~~~~~~~r 81 (230)
T d1l2ta_ 2 IKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIR 81 (230)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHH
T ss_pred EEEEEEEEEECCCCEEEEEEECEEEEECCCCEEEEECCCCCCCCHHHHHCCCCCCCCCCEEEECCEECCCCCHHHCCHHH
T ss_conf 89990799948998208987133778849979999889999821655750688777766269999985768855512312
Q ss_pred HCCEEEECCCCCCCCC-CHHHHHCCC-----CCCCCHHHHH-HHHHHHCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 3332888366766642-478883239-----9887999999-99999008899962746544422699998992499999
Q 001411 910 RRKIGLVQQEPALFST-TIYENIKYG-----NEDASEIELM-KATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRV 982 (1082)
Q Consensus 910 r~~i~~vpQ~~~lf~g-TIreNl~~~-----~~~~~d~ei~-~a~~~a~l~~~I~~lp~gldt~i~e~g~~LSgGQkQrl 982 (1082)
|++|+||+|++.+|+. ||+||+.++ .+..+.++.. .+.+.... -.+++. ........||||||||+
T Consensus 82 ~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~l~~----~~L~~~---~~~~~p~~LSGGqkQRv 154 (230)
T d1l2ta_ 82 RDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKM----AELEER---FANHKPNQLSGGQQQRV 154 (230)
T ss_dssp HHHEEEECTTCCCCTTSCHHHHHHHHHHTCCSSCCCHHHHHHHHHHHHHH----TTCCGG---GTTCCGGGSCHHHHHHH
T ss_pred CCEEEEEECCHHHCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH----HCHHHH---HHCCCHHHCCHHHHHHH
T ss_conf 55577880412417686688877578887224789999999999998876----242345---53488023899999999
Q ss_pred HHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHC-C-CCEEEEEECCCHHHHCCCEEEEEECCEEEEECCH
Q ss_conf 99999703998778517778989798999999999861-8-9649998069225530588999959889882596
Q 001411 983 AIARAILKNPSILLLDEATSALDTASENLIQEALDKLM-E-GRTTIMVAHRLSTIRNADKIAVLQQGKVAEIGSH 1055 (1082)
Q Consensus 983 aLARAll~~p~ILiLDEpTS~LD~~te~~I~~~L~~~~-~-~~TvI~IsHrl~~i~~~DrI~vl~~G~ive~G~~ 1055 (1082)
+|||||+.+|++|+||||||+||+.+...|++.|+++. + ++|+|+|||+++.++.||||++|++|+|++.|++
T Consensus 155 aIAraL~~~P~lLllDEPTs~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~~a~~~drv~~m~~G~Iv~~g~~ 229 (230)
T d1l2ta_ 155 AIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVEREEKL 229 (230)
T ss_dssp HHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEEECSCHHHHTTSSEEEEEETTEEEEEEEC
T ss_pred HHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCEEEEECCCHHHHHHCCEEEEEECCEEEEECCC
T ss_conf 987565227888994687654698999999999999998439999998788899986998999989999995257
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Probab=100.00 E-value=5.7e-41 Score=357.21 Aligned_cols=220 Identities=25% Similarity=0.414 Sum_probs=183.8
Q ss_pred CCEEEEEEEEECCCCCCCCCCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHHHH-C
Q ss_conf 649998688888999996530120387628958999838999778899988132669841899999507999978873-3
Q 001411 833 GNIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLR-R 911 (1082)
Q Consensus 833 ~~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~iaIvG~SGsGKSTL~~lL~gl~~p~~G~I~idg~di~~~~~~~lr-~ 911 (1082)
..|+++||+++|+ +..+|+||||+|++||++||+||||||||||+++|+|+++|++|+|+++|.|+...+.+..+ .
T Consensus 5 ~~Lev~~l~k~yg---~~~al~~vs~~i~~Gei~~liGpnGaGKSTl~~~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~r~ 81 (240)
T d1ji0a_ 5 IVLEVQSLHVYYG---AIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRM 81 (240)
T ss_dssp EEEEEEEEEEEET---TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHT
T ss_pred EEEEEEEEEEEEC---CEEEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHHHHHH
T ss_conf 0799961899989---9888830257888997999999999859999999967888880389842443446608888874
Q ss_pred CEEEECCCCCCCCC-CHHHHHCCCCCC-CCHHHHHHHHHHHCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHC
Q ss_conf 32888366766642-478883239988-7999999999990088999627465444226999989924999999999970
Q 001411 912 KIGLVQQEPALFST-TIYENIKYGNED-ASEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAIL 989 (1082)
Q Consensus 912 ~i~~vpQ~~~lf~g-TIreNl~~~~~~-~~d~ei~~a~~~a~l~~~I~~lp~gldt~i~e~g~~LSgGQkQrlaLARAll 989 (1082)
.++|+||++.+|+. |++||+.++... ...++..+.++.+- + .+ .+++.........||||||||++||||++
T Consensus 82 gi~~~~q~~~l~~~ltv~en~~~~~~~~~~~~~~~~~~~~~~--~---~~-~~l~~~~~~~~~~LSGG~~Qrv~iAraL~ 155 (240)
T d1ji0a_ 82 GIALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWIF--S---LF-PRLKERLKQLGGTLSGGEQQMLAIGRALM 155 (240)
T ss_dssp TEEEECSSCCCCTTSBHHHHHHGGGTTCCCSSHHHHHHHHHH--H---HC-HHHHTTTTSBSSSSCHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHH--H---HH-HCHHHHHHCCHHHCCHHHHHHHHHHHHHH
T ss_conf 235567655457763699999988873278889999999999--8---74-17688875854338999999999999998
Q ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHHC-CCCEEEEEECCCHHHHC-CCEEEEEECCEEEEECCHHHHHHH
Q ss_conf 3998778517778989798999999999861-89649998069225530-588999959889882596789510
Q 001411 990 KNPSILLLDEATSALDTASENLIQEALDKLM-EGRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGSHEQLLRK 1061 (1082)
Q Consensus 990 ~~p~ILiLDEpTS~LD~~te~~I~~~L~~~~-~~~TvI~IsHrl~~i~~-~DrI~vl~~G~ive~G~~~eLl~~ 1061 (1082)
.+|++|+|||||++||+.+...|++.++++. +|+|+|++||+++.+.. ||||++|++|++++.|+++|++++
T Consensus 156 ~~P~lLllDEPt~gLD~~~~~~i~~~i~~l~~~g~til~~tH~l~~~~~~~drv~vl~~G~iv~~g~~~el~~~ 229 (240)
T d1ji0a_ 156 SRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIVLEGKASELLDN 229 (240)
T ss_dssp TCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEEEHHHHHTC
T ss_pred HCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEECCHHHHHCC
T ss_conf 29987400398867999999999999999996899899995889999996999999989999998489998429
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=2.8e-41 Score=359.79 Aligned_cols=217 Identities=24% Similarity=0.403 Sum_probs=182.0
Q ss_pred CEEEEEEEEECCCCCCCCCCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHHHHC-C
Q ss_conf 499986888889999965301203876289589998389997788999881326698418999995079999788733-3
Q 001411 834 NIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRR-K 912 (1082)
Q Consensus 834 ~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~iaIvG~SGsGKSTL~~lL~gl~~p~~G~I~idg~di~~~~~~~lr~-~ 912 (1082)
-++++||+++|+ +..+|+||||+|++||++||+||||||||||+++|+|+++|++|+|+++|.|+...++.+.++ .
T Consensus 4 iL~v~nlsk~yg---~~~aL~~vs~~v~~Gei~~liG~nGaGKSTLl~~i~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~g 80 (254)
T d1g6ha_ 4 ILRTENIVKYFG---EFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYG 80 (254)
T ss_dssp EEEEEEEEEEET---TEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHT
T ss_pred EEEEEEEEEEEC---CEEEECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCHHHHHHHHHC
T ss_conf 699977899979---96887121799889979999999998499999999779768873799999966405699999833
Q ss_pred EEEECCCCCCCCC-CHHHHHCCCCCC---------------CCHHHHHHHHHHHCHHHHHHHCCCCCCCCCCCCCCCCCH
Q ss_conf 2888366766642-478883239988---------------799999999999008899962746544422699998992
Q 001411 913 IGLVQQEPALFST-TIYENIKYGNED---------------ASEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSG 976 (1082)
Q Consensus 913 i~~vpQ~~~lf~g-TIreNl~~~~~~---------------~~d~ei~~a~~~a~l~~~I~~lp~gldt~i~e~g~~LSg 976 (1082)
++|+||++.+|.. ||+||+.++... ..+++..+. +.+.++.+ +++.........|||
T Consensus 81 i~~v~Q~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~l~~~--~l~~~~~~~~~~LSg 153 (254)
T d1g6ha_ 81 IVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEK-----AFKILEFL--KLSHLYDRKAGELSG 153 (254)
T ss_dssp EEECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHH-----HHHHHHHT--TCGGGTTSBGGGSCH
T ss_pred CCCCCCCCCCCCCCEEEEEEEEHHHHCCCCCHHHHHHHCCCCCHHHHHHH-----HHHHHHHC--CCCHHCCCCHHHCCC
T ss_conf 87257764247887423214301333034504566542135328999999-----99998761--963020595356991
Q ss_pred HHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHC-CCCEEEEEECCCHHHHC-CCEEEEEECCEEEEECC
Q ss_conf 49999999999703998778517778989798999999999861-89649998069225530-58899995988988259
Q 001411 977 GQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLM-EGRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGS 1054 (1082)
Q Consensus 977 GQkQrlaLARAll~~p~ILiLDEpTS~LD~~te~~I~~~L~~~~-~~~TvI~IsHrl~~i~~-~DrI~vl~~G~ive~G~ 1054 (1082)
|||||++||||++.+|++|||||||++||+.+.+.|++.|+++. +|+|+|+|||+++.+.. ||||++|++|+|++.|+
T Consensus 154 G~~Qrv~iAraL~~~P~llilDEPt~gLD~~~~~~i~~~i~~l~~~g~til~vsHdl~~~~~~~Drv~vm~~G~iv~~g~ 233 (254)
T d1g6ha_ 154 GQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGR 233 (254)
T ss_dssp HHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCSTTGGGCSEEEEEETTEEEEEEE
T ss_pred HHHHHHHHHHHHHHCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEEEC
T ss_conf 88889999999975927232439765699999999999999999789989999476999998699999996998999966
Q ss_pred HHHHHH
Q ss_conf 678951
Q 001411 1055 HEQLLR 1060 (1082)
Q Consensus 1055 ~~eLl~ 1060 (1082)
++|+.+
T Consensus 234 ~~e~~~ 239 (254)
T d1g6ha_ 234 GEEEIK 239 (254)
T ss_dssp SHHHHH
T ss_pred HHHHHH
T ss_conf 899865
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=1.8e-40 Score=352.93 Aligned_cols=219 Identities=23% Similarity=0.438 Sum_probs=186.6
Q ss_pred CCEEEEEEEEECCCCCCCCCCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHHHHCC
Q ss_conf 64999868888899999653012038762895899983899977889998813266984189999950799997887333
Q 001411 833 GNIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRK 912 (1082)
Q Consensus 833 ~~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~iaIvG~SGsGKSTL~~lL~gl~~p~~G~I~idg~di~~~~~~~lr~~ 912 (1082)
|+|+++|++++|. +.++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.|+.+. ....|+.
T Consensus 1 gaI~v~nl~k~yg---~~~vl~~vs~~v~~Gei~glvG~nGaGKSTLl~~l~G~~~p~~G~i~i~G~~i~~~-~~~~~~~ 76 (238)
T d1vpla_ 1 GAVVVKDLRKRIG---KKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEE-PHEVRKL 76 (238)
T ss_dssp CCEEEEEEEEEET---TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTC-HHHHHTT
T ss_pred CCEEEEEEEEEEC---CEEEECCCEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCC-HHHHHHH
T ss_conf 9789995899999---99998062568848979999999999999999999669887888799986724468-3988721
Q ss_pred EEEECCCCCCCCC-CHHHHHCCCCC--CCCHHHHHHHHHHHCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHC
Q ss_conf 2888366766642-47888323998--87999999999990088999627465444226999989924999999999970
Q 001411 913 IGLVQQEPALFST-TIYENIKYGNE--DASEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAIL 989 (1082)
Q Consensus 913 i~~vpQ~~~lf~g-TIreNl~~~~~--~~~d~ei~~a~~~a~l~~~I~~lp~gldt~i~e~g~~LSgGQkQrlaLARAll 989 (1082)
++||||++.+|.. |++||+.+... ..+..++.+.++.+ .+.+ +++.........||||||||++||||++
T Consensus 77 i~~vpq~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~-----l~~~--~l~~~~~~~~~~lSgG~~qrv~iA~al~ 149 (238)
T d1vpla_ 77 ISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERA-----TEIA--GLGEKIKDRVSTYSKGMVRKLLIARALM 149 (238)
T ss_dssp EEEECTTCCCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHH-----HHHH--CCGGGGGSBGGGCCHHHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHH-----HHHC--CCHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_conf 86750015468786677888989986179989999999999-----9867--9788885045337998989999999986
Q ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHHC-CCCEEEEEECCCHHHHC-CCEEEEEECCEEEEECCHHHHHHHC
Q ss_conf 3998778517778989798999999999861-89649998069225530-5889999598898825967895100
Q 001411 990 KNPSILLLDEATSALDTASENLIQEALDKLM-EGRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGSHEQLLRKE 1062 (1082)
Q Consensus 990 ~~p~ILiLDEpTS~LD~~te~~I~~~L~~~~-~~~TvI~IsHrl~~i~~-~DrI~vl~~G~ive~G~~~eLl~~~ 1062 (1082)
.+|++|+|||||++||+.+.+.|++.+++.. .|+|+|++||+++.+.. ||||++|++|++++.|+|+++.++.
T Consensus 150 ~~p~illLDEPt~gLD~~~~~~i~~~i~~~~~~g~tii~~tH~l~~~~~~~drv~vl~~G~iv~~g~~~el~~~~ 224 (238)
T d1vpla_ 150 VNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKERY 224 (238)
T ss_dssp TCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHTTTCSEEEEEETTEEEEEEEHHHHHHHT
T ss_pred CCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEECCHHHHHHCC
T ss_conf 599988733798897989999999999999965998999959899999969999999899999992899998652
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=100.00 E-value=1.8e-40 Score=353.03 Aligned_cols=218 Identities=28% Similarity=0.451 Sum_probs=185.9
Q ss_pred CCEEEEEEEEECCCCCCCCCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHHCCCCCCCEEEECCEECCCCCHHHHHHHC
Q ss_conf 74899978998899998641010388748989999849988089999999707889976799989507887878884113
Q 001411 204 GQIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQM 283 (1082)
Q Consensus 204 ~~i~~~~v~~~y~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~i~g~~~~~~~~~~~~~~i 283 (1082)
..|+++|++++|++ ..+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+.. +++|
T Consensus 5 ~~I~v~nlsk~yg~--~~al~~vsl~v~~Ge~~~liGpsGaGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~~~~--~r~i 80 (239)
T d1v43a3 5 VEVKLENLTKRFGN--FTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPK--DRNI 80 (239)
T ss_dssp CCEEEEEEEEEETT--EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGG--GGTE
T ss_pred CEEEEEEEEEEECC--EEEECCEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEECCCCCCC--CCEE
T ss_conf 74999879999999--9998130678879989999999998299999999758999878799916413547700--0158
Q ss_pred EEECCCCCCCHH-CHHHHHHCCCCCC--CHHHHHHHHHHHCHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCC
Q ss_conf 587367776722-0999883399999--9999999999954498886299875542358999899689999999986056
Q 001411 284 GLVSQEPALFAT-SIANNILLGKEDA--SMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLR 360 (1082)
Q Consensus 284 ~~v~Q~~~l~~~-ti~~ni~~~~~~~--~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqrialARal~~ 360 (1082)
+||+|++.+|+. |++||+.++.... +.++..+. +.+.++.+ |+....+.....||||||||++|||||+.
T Consensus 81 g~v~Q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~-----~~~~l~~~--~l~~~~~~~~~~LSGGq~QRvaiAraL~~ 153 (239)
T d1v43a3 81 SMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKR-----VRWAAELL--QIEELLNRYPAQLSGGQRQRVAVARAIVV 153 (239)
T ss_dssp EEEEC------CCCHHHHHHTTCC--CCCHHHHHHH-----HHHHHHHT--TCGGGTTSCTTTCCSSCHHHHHHHHHHTT
T ss_pred EEEEECHHHCCCCHHHHHHHHHHHHCCCCHHHHHHH-----HHHHHHHC--CCHHHHCCCHHHCCHHHHHHHHHHHHHCC
T ss_conf 998003353422209999999998739999999999-----99999875--98556609954699999889999766404
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHC--CCCEEEEECCCCCCCCC-CCEEEEEECCEEEEECCCHHHHHCC
Q ss_conf 997657717545889897999999999770--99739998049430013-8979999497898841710322008
Q 001411 361 NPKILLLDEATSALDAESELIVQRALEKIM--SNRTTIVVAHRLSTVRD-VDTIMVLKNGQVVESGTHVDLISKG 432 (1082)
Q Consensus 361 ~~~illlDEpts~lD~~~~~~i~~~l~~~~--~~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~ 432 (1082)
+|++++|||||++||+.+...+++.+.++. .+.|+|++||+++.+.. |||+++|++|++++.|++++++.+.
T Consensus 154 ~P~iLllDEPts~LD~~~~~~i~~ll~~l~~~~g~tii~vTHd~~~a~~~~dri~vm~~G~iv~~G~~~el~~~P 228 (239)
T d1v43a3 154 EPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLRP 228 (239)
T ss_dssp CCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHCC
T ss_pred CCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEECCHHHHHHCC
T ss_conf 998243068866689899989999999998731980799948999999869999999899999985999998689
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=100.00 E-value=6e-41 Score=357.04 Aligned_cols=216 Identities=30% Similarity=0.455 Sum_probs=185.0
Q ss_pred CEEEEEEEEECCCCCCCCCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHHCCCCCCCEEEECCEECCCCC---HHHHHH
Q ss_conf 48999789988999986410103887489899998499880899999997078899767999895078878---788841
Q 001411 205 QIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQ---LKWLRE 281 (1082)
Q Consensus 205 ~i~~~~v~~~y~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~i~g~~~~~~~---~~~~~~ 281 (1082)
.|+++|++++|++....+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+ ...+|+
T Consensus 3 ~i~v~nlsk~y~~g~~~aL~~vsl~i~~Ge~~~iiG~sGsGKSTll~~i~gl~~p~~G~I~~~g~~i~~~~~~~~~~~rr 82 (242)
T d1oxxk2 3 RIIVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDR 82 (242)
T ss_dssp CEEEEEEEEEEGGGTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGGGS
T ss_pred EEEEEEEEEEECCCCEEEEECEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEEEECCCHHHCCHHHC
T ss_conf 89997579998899989980407898799899999899980999999997586888745999999951373111531204
Q ss_pred HCEEECCCCCCCHH-CHHHHHHCCCCCC--CH----HHHHHHHHHHCHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 13587367776722-0999883399999--99----99999999954498886299875542358999899689999999
Q 001411 282 QMGLVSQEPALFAT-SIANNILLGKEDA--SM----DRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAI 354 (1082)
Q Consensus 282 ~i~~v~Q~~~l~~~-ti~~ni~~~~~~~--~~----~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqrial 354 (1082)
+++||+|++.+|+. |++||+.++.... .. +++.+.++.++ +..........||||||||++|
T Consensus 83 ~ig~vfQ~~~L~p~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~g-----------L~~~~~~~p~~LSGGqkQRvai 151 (242)
T d1oxxk2 83 KIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILD-----------IHHVLNHFPRELSGAQQQRVAL 151 (242)
T ss_dssp CEEEEETTSCCCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTT-----------CGGGTTSCGGGSCHHHHHHHHH
T ss_pred CCEEEECCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC-----------HHHHHHCCHHHCCHHHHHHHHH
T ss_conf 51477304334666657777665567613799999999999986659-----------1766648954599999858998
Q ss_pred HHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCC--CCEEEEECCCCCCCC-CCCEEEEEECCEEEEECCCHHHHHC
Q ss_conf 9860569976577175458898979999999997709--973999804943001-3897999949789884171032200
Q 001411 355 ARAVLRNPKILLLDEATSALDAESELIVQRALEKIMS--NRTTIVVAHRLSTVR-DVDTIMVLKNGQVVESGTHVDLISK 431 (1082)
Q Consensus 355 ARal~~~~~illlDEpts~lD~~~~~~i~~~l~~~~~--~~tvi~vtH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~~ 431 (1082)
||||..+|+++++||||++||+.+...+++.++++.+ +.|+|++||+++.+. .|||+++|++|++++.|++++++++
T Consensus 152 ARaL~~~P~llllDEPt~~LD~~~~~~i~~~i~~l~~~~g~tvi~vTHd~~~~~~~~dri~vm~~G~iv~~g~~~el~~~ 231 (242)
T d1oxxk2 152 ARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDLYDN 231 (242)
T ss_dssp HHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred HHHHHHCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEECCHHHHHHC
T ss_conf 75776046614544786679989988998999999863598799997999999996999999989999998699999868
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Probab=100.00 E-value=2.5e-40 Score=351.89 Aligned_cols=210 Identities=30% Similarity=0.562 Sum_probs=183.8
Q ss_pred EEEEEEEEECCCCCCCCCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHHCCCCCCCEEEECCEECCCCCHHHHHHHCEE
Q ss_conf 89997899889999864101038874898999984998808999999970788997679998950788787888411358
Q 001411 206 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGL 285 (1082)
Q Consensus 206 i~~~~v~~~y~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~i~g~~~~~~~~~~~~~~i~~ 285 (1082)
|+++|++++|++ .+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++.+.+.. +++++|
T Consensus 2 i~v~nlsk~y~~---~aL~~vs~~i~~Ge~~~liGpsGaGKSTll~~l~Gl~~p~sG~I~~~G~~i~~~~~~--~r~ig~ 76 (229)
T d3d31a2 2 IEIESLSRKWKN---FSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPE--KHDIAF 76 (229)
T ss_dssp EEEEEEEEECSS---CEEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCHH--HHTCEE
T ss_pred EEEEEEEEEECC---EEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHH--HHCCEE
T ss_conf 899989999499---788433789879989999989998299999999647688878899956734652165--740561
Q ss_pred ECCCCCCCHH-CHHHHHHCCCC---CCCHHHHHHHHHHHCHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCC
Q ss_conf 7367776722-09998833999---9999999999999544988862998755423589998996899999999860569
Q 001411 286 VSQEPALFAT-SIANNILLGKE---DASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRN 361 (1082)
Q Consensus 286 v~Q~~~l~~~-ti~~ni~~~~~---~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqrialARal~~~ 361 (1082)
|+|++.+|+. ||+||+.++.. ....+++.++++..++.+ .......+||||||||++|||||+.+
T Consensus 77 v~Q~~~l~~~~tV~enl~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LSGG~~QRvaiAraL~~~ 145 (229)
T d3d31a2 77 VYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEH-----------LLDRNPLTLSGGEQQRVALARALVTN 145 (229)
T ss_dssp ECTTCCCCTTSCHHHHHHHHHHHHCCCCHHHHHHHHHHTTCTT-----------TTTSCGGGSCHHHHHHHHHHHHTTSC
T ss_pred ECCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHCCHH-----------HHHCCHHHCCHHHHCCHHHHHHHHCC
T ss_conf 5121111746657788888776405538999999999825655-----------57589554799984014030434436
Q ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHHC--CCCEEEEECCCCCCCCC-CCEEEEEECCEEEEECCCHHHHHC
Q ss_conf 97657717545889897999999999770--99739998049430013-897999949789884171032200
Q 001411 362 PKILLLDEATSALDAESELIVQRALEKIM--SNRTTIVVAHRLSTVRD-VDTIMVLKNGQVVESGTHVDLISK 431 (1082)
Q Consensus 362 ~~illlDEpts~lD~~~~~~i~~~l~~~~--~~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 431 (1082)
|++++|||||++||+.+...+++.++++. .+.|+|++||+++.+.. |||+++|++|++++.|++++++++
T Consensus 146 P~iLllDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~vtHd~~~~~~~~drv~vm~~G~iv~~g~~~el~~~ 218 (229)
T d3d31a2 146 PKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEIFEK 218 (229)
T ss_dssp CSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHHHHHHHCSEEEEESSSCEEEEECHHHHHSS
T ss_pred CCCEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHCCEEEEEECCEEEEECCHHHHHHC
T ss_conf 7714434787679989999999999999864796899974999999996999999979999998699999868
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.4e-40 Score=353.85 Aligned_cols=211 Identities=31% Similarity=0.499 Sum_probs=182.8
Q ss_pred EEEEEEEEECCCCCCCCCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHHCCCCCCCEEEECCEECCCCCHHHHHHHCEE
Q ss_conf 89997899889999864101038874898999984998808999999970788997679998950788787888411358
Q 001411 206 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGL 285 (1082)
Q Consensus 206 i~~~~v~~~y~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~i~g~~~~~~~~~~~~~~i~~ 285 (1082)
|+++||+++|++ ..+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++.+.+.. +++|+|
T Consensus 1 Iev~nv~k~yg~--~~~l~~isl~i~~Gei~~liGpsGsGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~~~~--~r~ig~ 76 (232)
T d2awna2 1 VQLQNVTKAWGE--VVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPA--ERGVGM 76 (232)
T ss_dssp EEEEEEEEEETT--EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEESSSCCTTSCGG--GTCEEE
T ss_pred CEEEEEEEEECC--EEEEEEEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEECCCCCHH--HCEEEE
T ss_conf 999999999899--9998111778869989999989998299999999658788888899999977888644--432223
Q ss_pred ECCCCCCCHH-CHHHHHHCCCCCCC------HHHHHHHHHHHCHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHC
Q ss_conf 7367776722-09998833999999------9999999999544988862998755423589998996899999999860
Q 001411 286 VSQEPALFAT-SIANNILLGKEDAS------MDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAV 358 (1082)
Q Consensus 286 v~Q~~~l~~~-ti~~ni~~~~~~~~------~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqrialARal 358 (1082)
|+|++.+|+. |++||+.++..... .+++.+.++.+++.++ ......+||||||||++|||||
T Consensus 77 v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~-----------~~~~~~~LSGGqkQRvaiAraL 145 (232)
T d2awna2 77 VFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHL-----------LDRKPKALSGGQRQRVAIGRTL 145 (232)
T ss_dssp ECSSCCC---------------------CHHHHHHHHHHHHC--------------------------------CHHHHH
T ss_pred ECCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHH-----------HHCCHHHCCHHHHHHHHHHHHH
T ss_conf 43342026433378897899987599889999999999975788656-----------6489656999999999999997
Q ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHHHHHC--CCCEEEEECCCCCCCCC-CCEEEEEECCEEEEECCCHHHHHC
Q ss_conf 56997657717545889897999999999770--99739998049430013-897999949789884171032200
Q 001411 359 LRNPKILLLDEATSALDAESELIVQRALEKIM--SNRTTIVVAHRLSTVRD-VDTIMVLKNGQVVESGTHVDLISK 431 (1082)
Q Consensus 359 ~~~~~illlDEpts~lD~~~~~~i~~~l~~~~--~~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 431 (1082)
+.+|++++|||||++||+.+...+++.+.++. .+.|+|++||+++.+.. |||+++|++|++++.|++++++++
T Consensus 146 ~~~P~illlDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~~a~~~~dri~vm~~G~iv~~G~~~el~~~ 221 (232)
T d2awna2 146 VAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHY 221 (232)
T ss_dssp HTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred HCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEEECHHHHHHC
T ss_conf 0399889975888788988998999999999874298799994899999996999999979999998089999738
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=2.5e-40 Score=351.88 Aligned_cols=215 Identities=34% Similarity=0.532 Sum_probs=184.0
Q ss_pred EEEEEEEEECCCCCC--CCCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHHCCCCCCCEEEECCEECCCCCHHH---HH
Q ss_conf 899978998899998--6410103887489899998499880899999997078899767999895078878788---84
Q 001411 206 IEFSEVCFAYPSRPH--MVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKW---LR 280 (1082)
Q Consensus 206 i~~~~v~~~y~~~~~--~~l~~is~~i~~G~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~i~g~~~~~~~~~~---~~ 280 (1082)
|+++|++++|+.... .+|+|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++...+... +|
T Consensus 2 i~v~nlsk~y~~~~~~~~al~~vsl~i~~Ge~~~iiG~sGsGKSTLl~~i~Gl~~p~sG~I~~~g~~i~~~~~~~~~~~r 81 (240)
T d3dhwc1 2 IKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKAR 81 (240)
T ss_dssp EEEEEEEEEEECSSCEEEEEEEEEEEECSSCEEEEEESTTSSHHHHHHHHTTSSCCSEEEEEETTEEECTTCHHHHHHHH
T ss_pred EEEEEEEEEECCCCEEEEEEECEEEEECCCCEEEEECCCCCCHHHHHHHHCCCCCCCCCCEEECCEEEEECCHHHHHHHH
T ss_conf 79982799969998148986150578869979999899989888999987588636677328867685208755511554
Q ss_pred HHCEEECCCCCCCHH-CHHHHHHCCCC----CCC--HHHHHHHHHHHCHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 113587367776722-09998833999----999--99999999995449888629987554235899989968999999
Q 001411 281 EQMGLVSQEPALFAT-SIANNILLGKE----DAS--MDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIA 353 (1082)
Q Consensus 281 ~~i~~v~Q~~~l~~~-ti~~ni~~~~~----~~~--~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqria 353 (1082)
++++||+|++.+|+. |++||+.++.. ... .+++.+.++.+++.+ ........||||||||++
T Consensus 82 r~ig~VfQ~~~l~~~~tv~eni~~~l~~~~~~~~~~~~~v~~~L~~vgL~~-----------~~~~~~~~LSGG~~QRva 150 (240)
T d3dhwc1 82 RQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGD-----------KHDSYPSNLSGGQKQRVA 150 (240)
T ss_dssp HHEEECCSSCCCCTTSBHHHHHHHHHHTTTCCTTHHHHHHHHHHHHHSTTT-----------TTSSCBSCCCHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCH-----------HHHCCHHHCCHHHHHHHH
T ss_conf 166430225222799649999999999849998999999999999769903-----------554894349999998999
Q ss_pred HHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCC--CCEEEEECCCCCCCCC-CCEEEEEECCEEEEECCCHHHHH
Q ss_conf 99860569976577175458898979999999997709--9739998049430013-89799994978988417103220
Q 001411 354 IARAVLRNPKILLLDEATSALDAESELIVQRALEKIMS--NRTTIVVAHRLSTVRD-VDTIMVLKNGQVVESGTHVDLIS 430 (1082)
Q Consensus 354 lARal~~~~~illlDEpts~lD~~~~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~ 430 (1082)
|||||..+|+++++||||++||+.+...+++.++++.+ +.|+|++||+++.+.. |||+++|++|++++.|++++++.
T Consensus 151 iAraL~~~P~lLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHdl~~~~~~~dri~vl~~G~iv~~G~~~ei~~ 230 (240)
T d3dhwc1 151 IARALASNPKVLLCDEATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVFS 230 (240)
T ss_dssp HHHHHHTCCSEEEEESGGGSSCHHHHHHHHHHHHHHHHHHCCEEEEEBSCHHHHHHHCSEEEEEETTEEEEEEETTTTTC
T ss_pred HHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHCCEEEEEECCEEEEECCHHHHHH
T ss_conf 86401058986874465565898885679999999986469789998389999998699999997999999879999972
Q ss_pred C
Q ss_conf 0
Q 001411 431 K 431 (1082)
Q Consensus 431 ~ 431 (1082)
+
T Consensus 231 ~ 231 (240)
T d3dhwc1 231 H 231 (240)
T ss_dssp S
T ss_pred C
T ss_conf 8
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=1.7e-40 Score=353.19 Aligned_cols=212 Identities=31% Similarity=0.463 Sum_probs=175.4
Q ss_pred EEEEEEEEECCCCCC--CCCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHHCCCCCCCEEEECCEECCCCCHHHH----
Q ss_conf 899978998899998--64101038874898999984998808999999970788997679998950788787888----
Q 001411 206 IEFSEVCFAYPSRPH--MVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWL---- 279 (1082)
Q Consensus 206 i~~~~v~~~y~~~~~--~~l~~is~~i~~G~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~i~g~~~~~~~~~~~---- 279 (1082)
|+++|++++|+.... .+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+...+
T Consensus 2 I~i~nlsk~y~~~~~~~~al~~isl~i~~Ge~~~iiG~sGsGKSTLl~~i~gl~~p~sG~I~~~g~~i~~~~~~~~~~~r 81 (230)
T d1l2ta_ 2 IKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIR 81 (230)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHH
T ss_pred EEEEEEEEEECCCCEEEEEEECEEEEECCCCEEEEECCCCCCCCHHHHHCCCCCCCCCCEEEECCEECCCCCHHHCCHHH
T ss_conf 89990799948998208987133778849979999889999821655750688777766269999985768855512312
Q ss_pred HHHCEEECCCCCCCHH-CHHHHHHCCCC-----CCCHHHHH-HHHHHHCHHHHHHCCCCCCCC-CCCCCCCCCCHHHHHH
Q ss_conf 4113587367776722-09998833999-----99999999-999995449888629987554-2358999899689999
Q 001411 280 REQMGLVSQEPALFAT-SIANNILLGKE-----DASMDRVI-EAAKAANAHSFVEGLPDGYQT-QVGEGGTQLSGGQKQR 351 (1082)
Q Consensus 280 ~~~i~~v~Q~~~l~~~-ti~~ni~~~~~-----~~~~~~~~-~~~~~~~~~~~i~~l~~g~~t-~~~~~g~~LSgGqkqr 351 (1082)
+++|+||+|++.+++. |++||+.++.. ....++.. .+.+ .++.+ |+.. .......+||||||||
T Consensus 82 ~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~------~l~~~--~L~~~~~~~~p~~LSGGqkQR 153 (230)
T d1l2ta_ 82 RDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALE------CLKMA--ELEERFANHKPNQLSGGQQQR 153 (230)
T ss_dssp HHHEEEECTTCCCCTTSCHHHHHHHHHHTCCSSCCCHHHHHHHHHH------HHHHT--TCCGGGTTCCGGGSCHHHHHH
T ss_pred CCEEEEEECCHHHCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHH------HHHHH--CHHHHHHCCCHHHCCHHHHHH
T ss_conf 5557788041241768668887757888722478999999999999------88762--423455348802389999999
Q ss_pred HHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHC--CCCEEEEECCCCCCCCCCCEEEEEECCEEEEECCC
Q ss_conf 999986056997657717545889897999999999770--99739998049430013897999949789884171
Q 001411 352 IAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIM--SNRTTIVVAHRLSTVRDVDTIMVLKNGQVVESGTH 425 (1082)
Q Consensus 352 ialARal~~~~~illlDEpts~lD~~~~~~i~~~l~~~~--~~~tvi~vtH~~~~~~~~d~i~~l~~G~i~~~g~~ 425 (1082)
++|||||..+|++++||||||+||+.++..+++.+.++. .+.|+|++||+++.+..|||+++|++|+|+++|+.
T Consensus 154 vaIAraL~~~P~lLllDEPTs~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~~a~~~drv~~m~~G~Iv~~g~~ 229 (230)
T d1l2ta_ 154 VAIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVEREEKL 229 (230)
T ss_dssp HHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEEECSCHHHHTTSSEEEEEETTEEEEEEEC
T ss_pred HHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCEEEEECCCHHHHHHCCEEEEEECCEEEEECCC
T ss_conf 9987565227888994687654698999999999999998439999998788899986998999989999995257
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=100.00 E-value=2.1e-39 Score=344.09 Aligned_cols=221 Identities=29% Similarity=0.527 Sum_probs=181.4
Q ss_pred EEEEEEEEECCCCCCCCCCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHHHHCCEE
Q ss_conf 99986888889999965301203876289589998389997788999881326698418999995079999788733328
Q 001411 835 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRKIG 914 (1082)
Q Consensus 835 I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~iaIvG~SGsGKSTL~~lL~gl~~p~~G~I~idg~di~~~~~~~lr~~i~ 914 (1082)
+++ ++..+|. +. .+ |+||+++ +|.++|+||||||||||+++|.|+++|++|+|.++|+|+.+++.. |++|+
T Consensus 3 l~v-~~~k~~g---~~-~~-~vs~~~~-~e~~~liGpnGaGKSTll~~i~Gl~~p~~G~I~~~G~~i~~~~~~--~r~ig 73 (240)
T d2onka1 3 LKV-RAEKRLG---NF-RL-NVDFEMG-RDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPE--RRGIG 73 (240)
T ss_dssp EEE-EEEEEET---TE-EE-EEEEEEC-SSEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCTT--TSCCB
T ss_pred EEE-EEEEEEC---CE-EE-EEEEEEC-CEEEEEECCCCCHHHHHHHHHHCCCCCCCEEEEECCEECCCCCHH--HCCCE
T ss_conf 999-9999989---99-99-9999749-979999979998099999999739998962899999998869989--92852
Q ss_pred EECCCCCCCCC-CHHHHHCCCCCCCCHHHHHHHHHHHCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCC
Q ss_conf 88366766642-47888323998879999999999900889996274654442269999899249999999999703998
Q 001411 915 LVQQEPALFST-TIYENIKYGNEDASEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPS 993 (1082)
Q Consensus 915 ~vpQ~~~lf~g-TIreNl~~~~~~~~d~ei~~a~~~a~l~~~I~~lp~gldt~i~e~g~~LSgGQkQrlaLARAll~~p~ 993 (1082)
||||++.+|+. ||+||+.++....+..+..+- +.+.++.+ |+..........||||||||++||||++.+|+
T Consensus 74 ~v~Q~~~l~~~ltV~enl~~~l~~~~~~~~~~~-----v~~~l~~~--gl~~~~~~~~~~LSGG~kQRvaiAral~~~P~ 146 (240)
T d2onka1 74 FVPQDYALFPHLSVYRNIAYGLRNVERVERDRR-----VREMAEKL--GIAHLLDRKPARLSGGERQRVALARALVIQPR 146 (240)
T ss_dssp CCCSSCCCCTTSCHHHHHHTTCTTSCHHHHHHH-----HHHHHHTT--TCTTTTTCCGGGSCHHHHHHHHHHHHHTTCCS
T ss_pred EECCCHHHCCCCHHHHHHHHHHCCCCHHHHHHH-----HHHHHHHC--CCHHHHHCCHHHCCHHHHHHHHHHHHHHCCCC
T ss_conf 252314435220155766653233677889999-----99999863--83756657944489999899999877751677
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHCC--CCEEEEEECCCHHHHC-CCEEEEEECCEEEEECCHHHHHHHCCCHHHHHH
Q ss_conf 7785177789897989999999998618--9649998069225530-588999959889882596789510052489999
Q 001411 994 ILLLDEATSALDTASENLIQEALDKLME--GRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGSHEQLLRKENGIYKQLI 1070 (1082)
Q Consensus 994 ILiLDEpTS~LD~~te~~I~~~L~~~~~--~~TvI~IsHrl~~i~~-~DrI~vl~~G~ive~G~~~eLl~~~~~~y~~l~ 1070 (1082)
+|+||||||+||+.+...+++.++++.+ +.|+|+|||+++.+.. ||||++|++|++++.|+++|+++..+...++++
T Consensus 147 illlDEPts~LD~~~~~~i~~~i~~l~~~~g~tvi~vtHd~~~~~~~adri~vm~~G~ii~~G~~~el~~~~~~~v~~fl 226 (240)
T d2onka1 147 LLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLADEVAVMLNGRIVEKGKLKELFSAKNGEVAEFL 226 (240)
T ss_dssp SBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCCSSHHHHG
T ss_pred CEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEEECHHHHHCCCCHHHHHHH
T ss_conf 06752865558879999999999999874397699981899999996999999989999999069998329988999985
Q ss_pred H
Q ss_conf 9
Q 001411 1071 R 1071 (1082)
Q Consensus 1071 ~ 1071 (1082)
.
T Consensus 227 ~ 227 (240)
T d2onka1 227 S 227 (240)
T ss_dssp G
T ss_pred C
T ss_conf 7
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Probab=100.00 E-value=2.4e-40 Score=352.00 Aligned_cols=214 Identities=27% Similarity=0.441 Sum_probs=183.0
Q ss_pred CEEEEEEEEECCCCCCCCCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHHCCCCCCCEEEECCEECCCCCHHH----HH
Q ss_conf 48999789988999986410103887489899998499880899999997078899767999895078878788----84
Q 001411 205 QIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKW----LR 280 (1082)
Q Consensus 205 ~i~~~~v~~~y~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~i~g~~~~~~~~~~----~~ 280 (1082)
.|+++|++++|++ ..+++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+... .+
T Consensus 3 ~i~v~nl~k~yg~--~~al~~vsl~i~~Ge~~~liG~sGaGKSTll~~i~gl~~p~sG~I~~~g~~i~~~~~~~~~~~~~ 80 (240)
T d1g2912 3 GVRLVDVWKVFGE--VTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKD 80 (240)
T ss_dssp EEEEEEEEEEETT--EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGGG
T ss_pred CEEEEEEEEEECC--EEEECCEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEEECCCCHHHHCCCCC
T ss_conf 1899869999899--99985606688699899999999980999999996487889898999999803566444245322
Q ss_pred HHCEEECCCCCCCHH-CHHHHHHCCCCC--CC----HHHHHHHHHHHCHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 113587367776722-099988339999--99----99999999995449888629987554235899989968999999
Q 001411 281 EQMGLVSQEPALFAT-SIANNILLGKED--AS----MDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIA 353 (1082)
Q Consensus 281 ~~i~~v~Q~~~l~~~-ti~~ni~~~~~~--~~----~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqria 353 (1082)
++|+||+|+|.+|+. ||.||+.++... .. .+++.+.++.+++.++ ......+||||||||++
T Consensus 81 r~ig~v~Q~~~L~~~ltV~eni~~~~~~~~~~~~e~~~~v~~~l~~~~l~~~-----------~~~~p~~LSGGqkQRv~ 149 (240)
T d1g2912 81 RDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTEL-----------LNRKPRELSGGQRQRVA 149 (240)
T ss_dssp SSEEEECSCCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGG-----------TTCCGGGSCHHHHHHHH
T ss_pred CCCEECCCCHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHH-----------HCCCHHHCCHHHHHHHH
T ss_conf 5512002212223101166763306877299989999999999987599667-----------62993349999999999
Q ss_pred HHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHC-C-CCEEEEECCCCCCCCC-CCEEEEEECCEEEEECCCHHHHH
Q ss_conf 9986056997657717545889897999999999770-9-9739998049430013-89799994978988417103220
Q 001411 354 IARAVLRNPKILLLDEATSALDAESELIVQRALEKIM-S-NRTTIVVAHRLSTVRD-VDTIMVLKNGQVVESGTHVDLIS 430 (1082)
Q Consensus 354 lARal~~~~~illlDEpts~lD~~~~~~i~~~l~~~~-~-~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~ 430 (1082)
|||||..+|++++|||||++||+.+...+++.+.++. + +.|+|++||+++.+.. |||+++|++|++++.|++++++.
T Consensus 150 IAraL~~~P~iLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHd~~~~~~~~drv~vm~~G~iv~~G~~~el~~ 229 (240)
T d1g2912 150 LGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEVYD 229 (240)
T ss_dssp HHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred HHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHCCEEEEEECCEEEEECCHHHHHH
T ss_conf 99998269988982588765698999899999999986369889999599999999699999998999999859999982
Q ss_pred C
Q ss_conf 0
Q 001411 431 K 431 (1082)
Q Consensus 431 ~ 431 (1082)
+
T Consensus 230 ~ 230 (240)
T d1g2912 230 K 230 (240)
T ss_dssp S
T ss_pred C
T ss_conf 8
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=2.2e-39 Score=343.78 Aligned_cols=220 Identities=28% Similarity=0.485 Sum_probs=182.5
Q ss_pred CEEEEEEEEECCCCCCCCCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHHCCCCCCCEEEECCEECCCCC---------
Q ss_conf 48999789988999986410103887489899998499880899999997078899767999895078878---------
Q 001411 205 QIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQ--------- 275 (1082)
Q Consensus 205 ~i~~~~v~~~y~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~i~g~~~~~~~--------- 275 (1082)
.|+++|++++|++ ..+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+
T Consensus 2 ~Lev~nl~k~yg~--~~al~~vs~~i~~GEi~~iiG~sGsGKSTLl~~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~~ 79 (258)
T d1b0ua_ 2 KLHVIDLHKRYGG--HEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVA 79 (258)
T ss_dssp CEEEEEEEEEETT--EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEES
T ss_pred EEEEEEEEEEECC--EEEECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEECCEEECCCCCCCHHCCCC
T ss_conf 6999978999899--99881506688699799999899982999999997476678997799999933677520000235
Q ss_pred ----HHHHHHHCEEECCCCCCCHH-CHHHHHHCCC---CCCCH----HHHHHHHHHHCHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf ----78884113587367776722-0999883399---99999----999999999544988862998755423589998
Q 001411 276 ----LKWLREQMGLVSQEPALFAT-SIANNILLGK---EDASM----DRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQ 343 (1082)
Q Consensus 276 ----~~~~~~~i~~v~Q~~~l~~~-ti~~ni~~~~---~~~~~----~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~ 343 (1082)
...+|++++||+|+|.+|+. |+.||+.++. ..... +++.+.++.+++.+.. ......+
T Consensus 80 ~~~~~~~~r~~ig~vfQ~~~l~~~~tv~env~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~----------~~~~p~~ 149 (258)
T d1b0ua_ 80 DKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERA----------QGKYPVH 149 (258)
T ss_dssp CHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHH----------HTSCGGG
T ss_pred CHHHHHHHHCCEEEEEECHHHCCCHHCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHH----------HCCCCCC
T ss_conf 176799974544899833231411010213656578762999899999999999982995244----------3068220
Q ss_pred CCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHC-CCCEEEEECCCCCCCCC-CCEEEEEECCEEEE
Q ss_conf 99689999999986056997657717545889897999999999770-99739998049430013-89799994978988
Q 001411 344 LSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIM-SNRTTIVVAHRLSTVRD-VDTIMVLKNGQVVE 421 (1082)
Q Consensus 344 LSgGqkqrialARal~~~~~illlDEpts~lD~~~~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~~ 421 (1082)
|||||+||++|||||..+|+++++||||++||+.+...+++.++++. ++.|+|+|||+++.+.. ||||++|.+|++++
T Consensus 150 LSGG~~QRv~iAraL~~~P~llilDEPT~gLD~~~~~~i~~ll~~l~~~g~til~vtHdl~~~~~~adri~vm~~G~iv~ 229 (258)
T d1b0ua_ 150 LSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEE 229 (258)
T ss_dssp SCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHHHHHHHCSEEEEEETTEEEE
T ss_pred CCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHCCEEEEEECCEEEE
T ss_conf 56778889899999843998788524555688788889987655410368833899489999998699999997999999
Q ss_pred ECCCHHHHHC-CCHHH
Q ss_conf 4171032200-83259
Q 001411 422 SGTHVDLISK-GGEYA 436 (1082)
Q Consensus 422 ~g~~~~l~~~-~~~~~ 436 (1082)
.|++++++.+ ...|.
T Consensus 230 ~g~~~ev~~~P~~~~~ 245 (258)
T d1b0ua_ 230 EGDPEQVFGNPQSPRL 245 (258)
T ss_dssp EECHHHHHHSCCSHHH
T ss_pred ECCHHHHHHCCCCHHH
T ss_conf 8499999838999999
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=1.2e-38 Score=337.60 Aligned_cols=218 Identities=22% Similarity=0.406 Sum_probs=182.2
Q ss_pred CEEEEEEEEECCCCCCCCCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHHCCCCCCCEEEECCEECCCCCHHHHHH-HC
Q ss_conf 48999789988999986410103887489899998499880899999997078899767999895078878788841-13
Q 001411 205 QIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLRE-QM 283 (1082)
Q Consensus 205 ~i~~~~v~~~y~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~i~g~~~~~~~~~~~~~-~i 283 (1082)
-++++|++++|++ ..+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++...++...++ .|
T Consensus 4 iL~v~nlsk~yg~--~~aL~~vs~~v~~Gei~~liG~nGaGKSTLl~~i~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~gi 81 (254)
T d1g6ha_ 4 ILRTENIVKYFGE--FKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGI 81 (254)
T ss_dssp EEEEEEEEEEETT--EEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHTE
T ss_pred EEEEEEEEEEECC--EEEECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCHHHHHHHHHCC
T ss_conf 6999778999799--68871217998899799999999984999999997797688737999999664056999998338
Q ss_pred EEECCCCCCCHH-CHHHHHHCCCCCC---------------CHHHHHHHHHHHCHHHHHHCCCCCCCCCCCCCCCCCCHH
Q ss_conf 587367776722-0999883399999---------------999999999995449888629987554235899989968
Q 001411 284 GLVSQEPALFAT-SIANNILLGKEDA---------------SMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGG 347 (1082)
Q Consensus 284 ~~v~Q~~~l~~~-ti~~ni~~~~~~~---------------~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgG 347 (1082)
+|+||+|.+|+. |+.||+.++.... ..++..+ .+.+.++.+ |+.........+||||
T Consensus 82 ~~v~Q~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LSgG 154 (254)
T d1g6ha_ 82 VRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVE-----KAFKILEFL--KLSHLYDRKAGELSGG 154 (254)
T ss_dssp EECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHH-----HHHHHHHHT--TCGGGTTSBGGGSCHH
T ss_pred CCCCCCCCCCCCCEEEEEEEEHHHHCCCCCHHHHHHHCCCCCHHHHHH-----HHHHHHHHC--CCCHHCCCCHHHCCCH
T ss_conf 725776424788742321430133303450456654213532899999-----999998761--9630205953569918
Q ss_pred HHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHC-CCCEEEEECCCCCCCC-CCCEEEEEECCEEEEECCC
Q ss_conf 9999999986056997657717545889897999999999770-9973999804943001-3897999949789884171
Q 001411 348 QKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIM-SNRTTIVVAHRLSTVR-DVDTIMVLKNGQVVESGTH 425 (1082)
Q Consensus 348 qkqrialARal~~~~~illlDEpts~lD~~~~~~i~~~l~~~~-~~~tvi~vtH~~~~~~-~~d~i~~l~~G~i~~~g~~ 425 (1082)
||||++||||++.+|++++|||||++||+.+...+++.+++++ ++.|++++||+++.+. .||||++|++|+++.+|++
T Consensus 155 ~~Qrv~iAraL~~~P~llilDEPt~gLD~~~~~~i~~~i~~l~~~g~til~vsHdl~~~~~~~Drv~vm~~G~iv~~g~~ 234 (254)
T d1g6ha_ 155 QMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRG 234 (254)
T ss_dssp HHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCSTTGGGCSEEEEEETTEEEEEEES
T ss_pred HHHHHHHHHHHHHCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEEECH
T ss_conf 88899999999759272324397656999999999999999997899899994769999986999999969989999668
Q ss_pred HHHHHC
Q ss_conf 032200
Q 001411 426 VDLISK 431 (1082)
Q Consensus 426 ~~l~~~ 431 (1082)
+|+.+.
T Consensus 235 ~e~~~~ 240 (254)
T d1g6ha_ 235 EEEIKN 240 (254)
T ss_dssp HHHHHH
T ss_pred HHHHHC
T ss_conf 998654
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Probab=100.00 E-value=1.8e-38 Score=336.18 Aligned_cols=219 Identities=23% Similarity=0.412 Sum_probs=181.2
Q ss_pred CEEEEEEEEECCCCCCCCCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHHCCCCCCCEEEECCEECCCCCHHHHH-HHC
Q ss_conf 4899978998899998641010388748989999849988089999999707889976799989507887878884-113
Q 001411 205 QIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLR-EQM 283 (1082)
Q Consensus 205 ~i~~~~v~~~y~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~i~g~~~~~~~~~~~~-~~i 283 (1082)
-++++|++++|++ ..+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+....+ ..+
T Consensus 6 ~Lev~~l~k~yg~--~~al~~vs~~i~~Gei~~liGpnGaGKSTl~~~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~r~gi 83 (240)
T d1ji0a_ 6 VLEVQSLHVYYGA--IHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMGI 83 (240)
T ss_dssp EEEEEEEEEEETT--EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTTE
T ss_pred EEEEEEEEEEECC--EEEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHHHHHHCC
T ss_conf 7999618999899--88883025788899799999999985999999996788888038984244344660888887423
Q ss_pred EEECCCCCCCHH-CHHHHHHCCCCCC-CHHHHHHHHHHHCHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCC
Q ss_conf 587367776722-0999883399999-99999999999544988862998755423589998996899999999860569
Q 001411 284 GLVSQEPALFAT-SIANNILLGKEDA-SMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRN 361 (1082)
Q Consensus 284 ~~v~Q~~~l~~~-ti~~ni~~~~~~~-~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqrialARal~~~ 361 (1082)
+|+||++.+|+. |++||+.++.... ..+......+.. .+. + .++.........+||||||||++||||++.+
T Consensus 84 ~~~~q~~~l~~~ltv~en~~~~~~~~~~~~~~~~~~~~~--~~~---~-~~l~~~~~~~~~~LSGG~~Qrv~iAraL~~~ 157 (240)
T d1ji0a_ 84 ALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWI--FSL---F-PRLKERLKQLGGTLSGGEQQMLAIGRALMSR 157 (240)
T ss_dssp EEECSSCCCCTTSBHHHHHHGGGTTCCCSSHHHHHHHHH--HHH---C-HHHHTTTTSBSSSSCHHHHHHHHHHHHHTTC
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHH--HHH---H-HCHHHHHHCCHHHCCHHHHHHHHHHHHHHHC
T ss_conf 556765545776369999998887327888999999999--987---4-1768887585433899999999999999829
Q ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHHC-CCCEEEEECCCCCCCCC-CCEEEEEECCEEEEECCCHHHHHC
Q ss_conf 97657717545889897999999999770-99739998049430013-897999949789884171032200
Q 001411 362 PKILLLDEATSALDAESELIVQRALEKIM-SNRTTIVVAHRLSTVRD-VDTIMVLKNGQVVESGTHVDLISK 431 (1082)
Q Consensus 362 ~~illlDEpts~lD~~~~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 431 (1082)
|++++|||||++||+.+...+++.++++. ++.|+|++||+++.+.. |||+++|++|++++.|+++++.++
T Consensus 158 P~lLllDEPt~gLD~~~~~~i~~~i~~l~~~g~til~~tH~l~~~~~~~drv~vl~~G~iv~~g~~~el~~~ 229 (240)
T d1ji0a_ 158 PKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIVLEGKASELLDN 229 (240)
T ss_dssp CSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEEEHHHHHTC
T ss_pred CCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEECCHHHHHCC
T ss_conf 987400398867999999999999999996899899995889999996999999989999998489998429
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=8.9e-38 Score=330.32 Aligned_cols=218 Identities=24% Similarity=0.427 Sum_probs=183.8
Q ss_pred CCEEEEEEEEECCCCCCCCCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHHCCCCCCCEEEECCEECCCCCHHHHHHHC
Q ss_conf 74899978998899998641010388748989999849988089999999707889976799989507887878884113
Q 001411 204 GQIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQM 283 (1082)
Q Consensus 204 ~~i~~~~v~~~y~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~i~g~~~~~~~~~~~~~~i 283 (1082)
|.|+++|++++|++. .+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++... ....++.+
T Consensus 1 gaI~v~nl~k~yg~~--~vl~~vs~~v~~Gei~glvG~nGaGKSTLl~~l~G~~~p~~G~i~i~G~~i~~~-~~~~~~~i 77 (238)
T d1vpla_ 1 GAVVVKDLRKRIGKK--EILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEE-PHEVRKLI 77 (238)
T ss_dssp CCEEEEEEEEEETTE--EEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTC-HHHHHTTE
T ss_pred CCEEEEEEEEEECCE--EEECCCEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCC-HHHHHHHE
T ss_conf 978999589999999--998062568848979999999999999999999669887888799986724468-39887218
Q ss_pred EEECCCCCCCHH-CHHHHHHCCCC--CCCHHHHHHHHHHHCHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCC
Q ss_conf 587367776722-09998833999--999999999999954498886299875542358999899689999999986056
Q 001411 284 GLVSQEPALFAT-SIANNILLGKE--DASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLR 360 (1082)
Q Consensus 284 ~~v~Q~~~l~~~-ti~~ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqrialARal~~ 360 (1082)
+|+||++.+|+. |+.||+.+... .....++.+..+.. ++.+ ++.........+||||||||++||||++.
T Consensus 78 ~~vpq~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~-----l~~~--~l~~~~~~~~~~lSgG~~qrv~iA~al~~ 150 (238)
T d1vpla_ 78 SYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERA-----TEIA--GLGEKIKDRVSTYSKGMVRKLLIARALMV 150 (238)
T ss_dssp EEECTTCCCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHH-----HHHH--CCGGGGGSBGGGCCHHHHHHHHHHHHHTT
T ss_pred EEEEECCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHH-----HHHC--CCHHHHHHHHHHCCHHHHHHHHHHHHHHC
T ss_conf 6750015468786677888989986179989999999999-----9867--97888850453379989899999999865
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHC-CCCEEEEECCCCCCCCC-CCEEEEEECCEEEEECCCHHHHHC
Q ss_conf 997657717545889897999999999770-99739998049430013-897999949789884171032200
Q 001411 361 NPKILLLDEATSALDAESELIVQRALEKIM-SNRTTIVVAHRLSTVRD-VDTIMVLKNGQVVESGTHVDLISK 431 (1082)
Q Consensus 361 ~~~illlDEpts~lD~~~~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 431 (1082)
+|++++|||||++||+.++..+++.++++. .++|+|++||+++.+.. ||||++|++|+++..|+++++.++
T Consensus 151 ~p~illLDEPt~gLD~~~~~~i~~~i~~~~~~g~tii~~tH~l~~~~~~~drv~vl~~G~iv~~g~~~el~~~ 223 (238)
T d1vpla_ 151 NPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKER 223 (238)
T ss_dssp CCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHTTTCSEEEEEETTEEEEEEEHHHHHHH
T ss_pred CCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEECCHHHHHHC
T ss_conf 9998873379889798999999999999996599899995989999996999999989999999289999865
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=100.00 E-value=6.8e-37 Score=322.88 Aligned_cols=211 Identities=28% Similarity=0.488 Sum_probs=177.2
Q ss_pred EEEEEEEEECCCCCCCCCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHHCCCCCCCEEEECCEECCCCCHHHHHHHCEE
Q ss_conf 89997899889999864101038874898999984998808999999970788997679998950788787888411358
Q 001411 206 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGL 285 (1082)
Q Consensus 206 i~~~~v~~~y~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~i~g~~~~~~~~~~~~~~i~~ 285 (1082)
+++ ++.++|++- .+ |+||++. +|+++|+||||||||||+++|+|+++|++|+|.++|+++...++. +++|+|
T Consensus 3 l~v-~~~k~~g~~---~~-~vs~~~~-~e~~~liGpnGaGKSTll~~i~Gl~~p~~G~I~~~G~~i~~~~~~--~r~ig~ 74 (240)
T d2onka1 3 LKV-RAEKRLGNF---RL-NVDFEMG-RDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPE--RRGIGF 74 (240)
T ss_dssp EEE-EEEEEETTE---EE-EEEEEEC-SSEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCTT--TSCCBC
T ss_pred EEE-EEEEEECCE---EE-EEEEEEC-CEEEEEECCCCCHHHHHHHHHHCCCCCCCEEEEECCEECCCCCHH--HCCCEE
T ss_conf 999-999998999---99-9999749-979999979998099999999739998962899999998869989--928522
Q ss_pred ECCCCCCCHH-CHHHHHHCCCCCCCHHHHHHHHHHHCHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCE
Q ss_conf 7367776722-099988339999999999999999544988862998755423589998996899999999860569976
Q 001411 286 VSQEPALFAT-SIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKI 364 (1082)
Q Consensus 286 v~Q~~~l~~~-ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqrialARal~~~~~i 364 (1082)
|+|++.+|+. ||+||+.++.......+..+. +.+.++.+ |+....+.....||||||||++||||++.+|++
T Consensus 75 v~Q~~~l~~~ltV~enl~~~l~~~~~~~~~~~-----v~~~l~~~--gl~~~~~~~~~~LSGG~kQRvaiAral~~~P~i 147 (240)
T d2onka1 75 VPQDYALFPHLSVYRNIAYGLRNVERVERDRR-----VREMAEKL--GIAHLLDRKPARLSGGERQRVALARALVIQPRL 147 (240)
T ss_dssp CCSSCCCCTTSCHHHHHHTTCTTSCHHHHHHH-----HHHHHHTT--TCTTTTTCCGGGSCHHHHHHHHHHHHHTTCCSS
T ss_pred ECCCHHHCCCCHHHHHHHHHHCCCCHHHHHHH-----HHHHHHHC--CCHHHHHCCHHHCCHHHHHHHHHHHHHHCCCCC
T ss_conf 52314435220155766653233677889999-----99999863--837566579444899998999998777516770
Q ss_pred EEEECCCCCCCHHHHHHHHHHHHHHCC--CCEEEEECCCCCCCCC-CCEEEEEECCEEEEECCCHHHHHC
Q ss_conf 577175458898979999999997709--9739998049430013-897999949789884171032200
Q 001411 365 LLLDEATSALDAESELIVQRALEKIMS--NRTTIVVAHRLSTVRD-VDTIMVLKNGQVVESGTHVDLISK 431 (1082)
Q Consensus 365 lllDEpts~lD~~~~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 431 (1082)
++|||||++||+.+...+++.++++.+ +.|+|++||+++.+.. |||+++|++|++++.|+++++++.
T Consensus 148 lllDEPts~LD~~~~~~i~~~i~~l~~~~g~tvi~vtHd~~~~~~~adri~vm~~G~ii~~G~~~el~~~ 217 (240)
T d2onka1 148 LLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLADEVAVMLNGRIVEKGKLKELFSA 217 (240)
T ss_dssp BEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred EEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEEECHHHHHCC
T ss_conf 6752865558879999999999999874397699981899999996999999989999999069998329
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=9.8e-37 Score=321.51 Aligned_cols=209 Identities=26% Similarity=0.401 Sum_probs=181.1
Q ss_pred CEEEEEEEEECCCCCCCCCCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHHHHCCE
Q ss_conf 49998688888999996530120387628958999838999778899988132669841899999507999978873332
Q 001411 834 NIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRKI 913 (1082)
Q Consensus 834 ~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~iaIvG~SGsGKSTL~~lL~gl~~p~~G~I~idg~di~~~~~~~lr~~i 913 (1082)
-++++||+.+| .|+||||+|++||.+||+||||||||||+++|.|++ |.+|+|.++|.++..++...++...
T Consensus 3 il~~~dv~~~~-------~l~~isl~I~~Gei~~iiG~nGaGKSTLl~~l~Gl~-~~~G~I~~~g~~i~~~~~~~~~~~~ 74 (231)
T d1l7vc_ 3 VMQLQDVAEST-------RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGKGSIQFAGQPLEAWSATKLALHR 74 (231)
T ss_dssp EEEEEEECCTT-------TSCSEEEEEETTCEEECBCCTTSSHHHHHHHHHTSC-CCSSEEEESSSBGGGSCHHHHHHHE
T ss_pred EEEEECCCCCC-------EECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCC-CCCEEEEECCEECCCCCHHHHHHHC
T ss_conf 99998741571-------555888899489899999899980999999994887-9955999999999869989998640
Q ss_pred EEECCCCC-CCCCCHHHHHCCCCCCCC-HHHHHHHHHHHCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCC-
Q ss_conf 88836676-664247888323998879-999999999900889996274654442269999899249999999999703-
Q 001411 914 GLVQQEPA-LFSTTIYENIKYGNEDAS-EIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILK- 990 (1082)
Q Consensus 914 ~~vpQ~~~-lf~gTIreNl~~~~~~~~-d~ei~~a~~~a~l~~~I~~lp~gldt~i~e~g~~LSgGQkQrlaLARAll~- 990 (1082)
+|++|+.. .|..++.+|+.++..+.. .+.+.++++..++ +..++.....||||||||++||||+++
T Consensus 75 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l-----------~~~~~~~~~~LSgG~~Qrv~iA~al~~~ 143 (231)
T d1l7vc_ 75 AYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALAL-----------DDKLGRSTNQLSGGEWQRVRLAAVVLQI 143 (231)
T ss_dssp EEECSCCCCCSSCBHHHHHHHHCSCTTCHHHHHHHHHHTTC-----------TTTTTSBGGGCCHHHHHHHHHHHHHHHH
T ss_pred EEEECCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHCCC-----------HHHHCCCHHHCCHHHHHHHHHHHHHHHH
T ss_conf 24512135774420988764100146689999999986598-----------7676768445699889999999999851
Q ss_pred ------CCCEEEEECCCCCCCHHHHHHHHHHHHHHC-CCCEEEEEECCCHHHHC-CCEEEEEECCEEEEECCHHHHHHH
Q ss_conf ------998778517778989798999999999861-89649998069225530-588999959889882596789510
Q 001411 991 ------NPSILLLDEATSALDTASENLIQEALDKLM-EGRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGSHEQLLRK 1061 (1082)
Q Consensus 991 ------~p~ILiLDEpTS~LD~~te~~I~~~L~~~~-~~~TvI~IsHrl~~i~~-~DrI~vl~~G~ive~G~~~eLl~~ 1061 (1082)
+|+|++|||||++||+.+...+++.++++. .|+|+|++||+++.+.. ||||++|++|++++.|+++|++.+
T Consensus 144 ~p~~~p~p~llllDEPt~gLD~~~~~~i~~~i~~l~~~g~tii~vtHdl~~~~~~~dri~vl~~G~iv~~G~~~ev~~~ 222 (231)
T d1l7vc_ 144 TPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALCQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVLTP 222 (231)
T ss_dssp CTTTCTTCCEEEESSCSTTCCHHHHHHHHHHHHHHHHTTCEEEECCCCHHHHHHHCSBCCBEETTEECCCSBHHHHSCH
T ss_pred CCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEECCHHHHHCC
T ss_conf 7133899889997187777898999999999999986799999996779999997999999979989998899998188
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=9.6e-34 Score=296.29 Aligned_cols=208 Identities=25% Similarity=0.429 Sum_probs=177.6
Q ss_pred EEEEEEEEECCCCCCCCCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHHCCCCCCCEEEECCEECCCCCHHHHHHHCEE
Q ss_conf 89997899889999864101038874898999984998808999999970788997679998950788787888411358
Q 001411 206 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGL 285 (1082)
Q Consensus 206 i~~~~v~~~y~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~i~g~~~~~~~~~~~~~~i~~ 285 (1082)
++++||+++| .|+|+||++++||+++|+||||||||||+++|+|+. |++|+|.++|+++...+...++...+|
T Consensus 4 l~~~dv~~~~------~l~~isl~I~~Gei~~iiG~nGaGKSTLl~~l~Gl~-~~~G~I~~~g~~i~~~~~~~~~~~~~~ 76 (231)
T d1l7vc_ 4 MQLQDVAEST------RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGKGSIQFAGQPLEAWSATKLALHRAY 76 (231)
T ss_dssp EEEEEECCTT------TSCSEEEEEETTCEEECBCCTTSSHHHHHHHHHTSC-CCSSEEEESSSBGGGSCHHHHHHHEEE
T ss_pred EEEECCCCCC------EECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCC-CCCEEEEECCEECCCCCHHHHHHHCEE
T ss_conf 9998741571------555888899489899999899980999999994887-995599999999986998999864024
Q ss_pred ECCCCCC-CHHCHHHHHHCCCCCCC-HHHHHHHHHHHCHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCC---
Q ss_conf 7367776-72209998833999999-999999999954498886299875542358999899689999999986056---
Q 001411 286 VSQEPAL-FATSIANNILLGKEDAS-MDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLR--- 360 (1082)
Q Consensus 286 v~Q~~~l-~~~ti~~ni~~~~~~~~-~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqrialARal~~--- 360 (1082)
++|+... |..++.+++.++..... .+.+.+.++.. +++..++....+||||||||++||||+++
T Consensus 77 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~-----------~l~~~~~~~~~~LSgG~~Qrv~iA~al~~~~p 145 (231)
T d1l7vc_ 77 LSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGAL-----------ALDDKLGRSTNQLSGGEWQRVRLAAVVLQITP 145 (231)
T ss_dssp ECSCCCCCSSCBHHHHHHHHCSCTTCHHHHHHHHHHT-----------TCTTTTTSBGGGCCHHHHHHHHHHHHHHHHCT
T ss_pred EECCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHC-----------CCHHHHCCCHHHCCHHHHHHHHHHHHHHHHCC
T ss_conf 5121357744209887641001466899999999865-----------98767676844569988999999999985171
Q ss_pred ----CCCEEEEECCCCCCCHHHHHHHHHHHHHHC-CCCEEEEECCCCCCCC-CCCEEEEEECCEEEEECCCHHHHHC
Q ss_conf ----997657717545889897999999999770-9973999804943001-3897999949789884171032200
Q 001411 361 ----NPKILLLDEATSALDAESELIVQRALEKIM-SNRTTIVVAHRLSTVR-DVDTIMVLKNGQVVESGTHVDLISK 431 (1082)
Q Consensus 361 ----~~~illlDEpts~lD~~~~~~i~~~l~~~~-~~~tvi~vtH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~~ 431 (1082)
+|++++|||||++||+.++..+++.++++. .+.|+|++||+++.+. .|||+++|++|++++.|++++++..
T Consensus 146 ~~~p~p~llllDEPt~gLD~~~~~~i~~~i~~l~~~g~tii~vtHdl~~~~~~~dri~vl~~G~iv~~G~~~ev~~~ 222 (231)
T d1l7vc_ 146 QANPAGQLLLLDEPMNSLDVAQQSALDKILSALCQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVLTP 222 (231)
T ss_dssp TTCTTCCEEEESSCSTTCCHHHHHHHHHHHHHHHHTTCEEEECCCCHHHHHHHCSBCCBEETTEECCCSBHHHHSCH
T ss_pred CCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEECCHHHHHCC
T ss_conf 33899889997187777898999999999999986799999996779999997999999979989998899998188
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Probab=100.00 E-value=1.2e-33 Score=295.50 Aligned_cols=191 Identities=20% Similarity=0.414 Sum_probs=156.9
Q ss_pred CEEEEEEEEECCCCCCCCCCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHHHHCCE
Q ss_conf 49998688888999996530120387628958999838999778899988132669841899999507999978873332
Q 001411 834 NIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRKI 913 (1082)
Q Consensus 834 ~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~iaIvG~SGsGKSTL~~lL~gl~~p~~G~I~idg~di~~~~~~~lr~~i 913 (1082)
.|+++||+++|+ .++|+|+||+|++||.+||+||||||||||+++|+|+++|++|+|.+||.++. .++.++
T Consensus 2 ~lev~~ls~~y~----~~vl~~is~~i~~Gei~~l~G~NGsGKSTLl~~i~gl~~p~~G~I~~~g~~i~-----~~~~~i 72 (200)
T d1sgwa_ 2 KLEIRDLSVGYD----KPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPIT-----KVKGKI 72 (200)
T ss_dssp EEEEEEEEEESS----SEEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGG-----GGGGGE
T ss_pred EEEEEEEEEEEC----CEEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEEHH-----HHCCCE
T ss_conf 599998999939----92884208898599899999999971999999996620567788999989626-----736708
Q ss_pred EEECCCCCCCCC-CHHHHHCCC----CCCCCHHHHHHHHHHHCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 888366766642-478883239----988799999999999008899962746544422699998992499999999997
Q 001411 914 GLVQQEPALFST-TIYENIKYG----NEDASEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAI 988 (1082)
Q Consensus 914 ~~vpQ~~~lf~g-TIreNl~~~----~~~~~d~ei~~a~~~a~l~~~I~~lp~gldt~i~e~g~~LSgGQkQrlaLARAl 988 (1082)
+|+||++.++.. |+.+|+... ....+++++.++++..++.+ ++..+ ..||||||||++||||+
T Consensus 73 ~~~~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~--------~~~~~----~~LSgG~~qrv~ia~al 140 (200)
T d1sgwa_ 73 FFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESVEVLD--------LKKKL----GELSQGTIRRVQLASTL 140 (200)
T ss_dssp EEECSSCCCCTTSBHHHHHHHHHHHTTCCCCHHHHHHHHHHTTCCC--------TTSBG----GGSCHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCC--------CCCCC----CCCCCCHHHHHHHHHHH
T ss_conf 9995013578882899999999975488637999999998748856--------30126----86897188889999988
Q ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHCCCEEEEEEC
Q ss_conf 0399877851777898979899999999986189649998069225530588999959
Q 001411 989 LKNPSILLLDEATSALDTASENLIQEALDKLMEGRTTIMVAHRLSTIRNADKIAVLQQ 1046 (1082)
Q Consensus 989 l~~p~ILiLDEpTS~LD~~te~~I~~~L~~~~~~~TvI~IsHrl~~i~~~DrI~vl~~ 1046 (1082)
+.+|+++||||||++||+.+++.+++.+.+..+++++++++|+. .+..||++.+|..
T Consensus 141 ~~~~~llllDEPt~gLD~~~~~~i~~~l~~~~~~~~~~ii~~~~-~l~~~D~~~~l~~ 197 (200)
T d1sgwa_ 141 LVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSRE-ELSYCDVNENLHK 197 (200)
T ss_dssp TSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESS-CCTTSSEEEEGGG
T ss_pred HCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEEC-HHHHCCHHHHEEE
T ss_conf 64998999868620169999999999999998679999999916-2544161234010
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Probab=99.97 E-value=2.9e-31 Score=275.33 Aligned_cols=191 Identities=19% Similarity=0.412 Sum_probs=152.8
Q ss_pred CEEEEEEEEECCCCCCCCCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHHCCCCCCCEEEECCEECCCCCHHHHHHHCE
Q ss_conf 48999789988999986410103887489899998499880899999997078899767999895078878788841135
Q 001411 205 QIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMG 284 (1082)
Q Consensus 205 ~i~~~~v~~~y~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~i~g~~~~~~~~~~~~~~i~ 284 (1082)
.|+++|++++|++ ++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++.. .+.+++
T Consensus 2 ~lev~~ls~~y~~---~vl~~is~~i~~Gei~~l~G~NGsGKSTLl~~i~gl~~p~~G~I~~~g~~i~~-----~~~~i~ 73 (200)
T d1sgwa_ 2 KLEIRDLSVGYDK---PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITK-----VKGKIF 73 (200)
T ss_dssp EEEEEEEEEESSS---EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGG-----GGGGEE
T ss_pred EEEEEEEEEEECC---EEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEEHHH-----HCCCEE
T ss_conf 5999989999399---28842088985998999999999719999999966205677889999896267-----367089
Q ss_pred EECCCCCCCHH-CHHHHHHCC----CCCCCHHHHHHHHHHHCHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCC
Q ss_conf 87367776722-099988339----9999999999999995449888629987554235899989968999999998605
Q 001411 285 LVSQEPALFAT-SIANNILLG----KEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVL 359 (1082)
Q Consensus 285 ~v~Q~~~l~~~-ti~~ni~~~----~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqrialARal~ 359 (1082)
|+||++.++.. |+.+|+.+. ......+++.++++..++. ++... ..+||||||||++||||++
T Consensus 74 ~~~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~--------~~~~~----~~~LSgG~~qrv~ia~al~ 141 (200)
T d1sgwa_ 74 FLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESVEVL--------DLKKK----LGELSQGTIRRVQLASTLL 141 (200)
T ss_dssp EECSSCCCCTTSBHHHHHHHHHHHTTCCCCHHHHHHHHHHTTCC--------CTTSB----GGGSCHHHHHHHHHHHHTT
T ss_pred EEEECCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCC--------CCCCC----CCCCCCCHHHHHHHHHHHH
T ss_conf 99501357888289999999997548863799999999874885--------63012----6868971888899999886
Q ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCEEEEEEC
Q ss_conf 699765771754588989799999999977099739998049430013897999949
Q 001411 360 RNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRDVDTIMVLKN 416 (1082)
Q Consensus 360 ~~~~illlDEpts~lD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~i~~l~~ 416 (1082)
.+|+++||||||++||+.+++.+++.+.+..+++++++++|+. .+..||.+.+|.+
T Consensus 142 ~~~~llllDEPt~gLD~~~~~~i~~~l~~~~~~~~~~ii~~~~-~l~~~D~~~~l~~ 197 (200)
T d1sgwa_ 142 VNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSRE-ELSYCDVNENLHK 197 (200)
T ss_dssp SCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESS-CCTTSSEEEEGGG
T ss_pred CCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEEC-HHHHCCHHHHEEE
T ss_conf 4998999868620169999999999999998679999999916-2544161234010
|
| >d3b60a2 f.37.1.1 (A:10-328) Multidrug resistance ABC transporter MsbA, N-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: ABC transporter transmembrane region superfamily: ABC transporter transmembrane region family: ABC transporter transmembrane region domain: Multidrug resistance ABC transporter MsbA, N-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=99.93 E-value=2.8e-20 Score=182.78 Aligned_cols=316 Identities=17% Similarity=0.249 Sum_probs=278.1
Q ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 69999998201357999999999998767879999999999975099934567489899999999999999999999999
Q 001411 497 SIWELLKLNAAEWPYAVLGSVGAILAGMEAPLFALGITHILTAFYSPHDSQIKRVVDQVALIFVGLAVVTIPVYLLQHYF 576 (1082)
Q Consensus 497 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 576 (1082)
..++++.+.+++++.+.+..+...+.++..+..++.+..+++........ .....+..+++++.++..++.++..+.
T Consensus 3 ~~krl~~~~~~~k~~l~~~~i~~~~~~~~~~~~~~~~~~~id~~~~~~~~---~~l~~~~~~~~~~~~~~~i~~~~~~~~ 79 (319)
T d3b60a2 3 TFRRLWPTIAPFKAGLIVAGIALILNAASDTFMLSLLKPLLDDGFGKTDR---SVLLWMPLVVIGLMILRGITSYISSYC 79 (319)
T ss_dssp HHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHSSTTSTTH---HHHHHSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 89999999999999999999999999999999999999999987446877---899999999999999764533546654
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999819976433467774589999984299999999889999999999999999999999788
Q 001411 577 YTLMGEHLTARVRLSMFSAILSNEIGWFDLDENNTGLLISTLAADATLVRSALADRLSIIVQNVALTVTAFVIAFILSWR 656 (1082)
Q Consensus 577 ~~~~~~~~~~~lr~~~~~~i~~~~~~~f~~~~~~~G~l~~r~~~Di~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 656 (1082)
..+.+.+...++|.++++++++.|+.+|+ ++++|++++++++|++.+...+.......+..+...+..++.++.++|.
T Consensus 80 ~~~~~~~~~~~l~~~~~~~ll~~~~~~~~--~~~~g~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 157 (319)
T d3b60a2 80 ISWVSGKVVMTMRRRLFGHMMGMPVAFFD--KQSTGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQ 157 (319)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCCSTHHH--HSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHCCCCCHHHHHHHHHCCCCHHHCC--CCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 43431000110004777765010111102--3332211111212121000011111200112334456688888765200
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999998468999999999999999999701799997171799999999998369999999999
Q 001411 657 LAAVVAASLPLLIGAFVAEQLFLKGFGGDYNRAYSRATSVAREAIANIRTVAAYGIEKRISIQFASELSQPNKQALLRGH 736 (1082)
Q Consensus 657 l~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 736 (1082)
+++++++.+|+.........+...+..+..++...+..+...|.++|++++|+++.|+.+.+++.+..++..+...+...
T Consensus 158 l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 237 (319)
T d3b60a2 158 LSIILVVLAPIVSIAIRVVSKRFRSISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKMRLQGMKMVS 237 (319)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEHHCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 21025668999999887666687787898876445677887776248723531110102456666653135677888887
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 99999999999999999999999999998179898889999999999999999999889999999998999999642335
Q 001411 737 ISGFGYGVSQLLSLCSYALGLWYASVLIKQKGSNFGDIMKSFMVLIITALAVAETLALAPDIVKGSQALGPVFGILYRKT 816 (1082)
Q Consensus 737 ~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 816 (1082)
..........++.....++++++|.+++..|.++.|++++++.+......|+..+......+.++..+.+|+.++++.++
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~g~it~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~s~~Ri~elld~~~ 317 (319)
T d3b60a2 238 ASSISDPIIQLIASLALAFVLYAASFPSVMDSLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDSEQ 317 (319)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSSSTTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 77740640100000023799999999998099789999999999999999999999999999999999999999966998
Q ss_pred C
Q ss_conf 6
Q 001411 817 A 817 (1082)
Q Consensus 817 ~ 817 (1082)
|
T Consensus 318 E 318 (319)
T d3b60a2 318 E 318 (319)
T ss_dssp S
T ss_pred C
T ss_conf 9
|
| >d2hyda2 f.37.1.1 (A:1-323) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: ABC transporter transmembrane region superfamily: ABC transporter transmembrane region family: ABC transporter transmembrane region domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=99.93 E-value=2.3e-20 Score=183.47 Aligned_cols=317 Identities=13% Similarity=0.153 Sum_probs=272.1
Q ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999998201357999999999998767879999999999975099934567----489899999999999999999999
Q 001411 498 IWELLKLNAAEWPYAVLGSVGAILAGMEAPLFALGITHILTAFYSPHDSQIK----RVVDQVALIFVGLAVVTIPVYLLQ 573 (1082)
Q Consensus 498 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~ 573 (1082)
+++++.+.+++++.+....+...+.+......++.++.+++........... .........+++..++...+.++.
T Consensus 2 lKrl~~~~k~~k~~~~~~~~~~~~~~~~~~~~p~l~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 81 (323)
T d2hyda2 2 IKRYLQFVKPYKYRIFATIIVGIIKFGIPMLIPLLIKYAIDGVINNHALTTDEKVHHLTIAIGIALFIFVIVRPPIEFIR 81 (323)
T ss_dssp HHHHHHHHGGGHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHHHHHHTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 89999999999999999999999999999999999999999986267742155689999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999999819976433467774589999984299999999889999999999999999999999
Q 001411 574 HYFYTLMGEHLTARVRLSMFSAILSNEIGWFDLDENNTGLLISTLAADATLVRSALADRLSIIVQNVALTVTAFVIAFIL 653 (1082)
Q Consensus 574 ~~~~~~~~~~~~~~lr~~~~~~i~~~~~~~f~~~~~~~G~l~~r~~~Di~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 653 (1082)
.+...+.+.+...++|.++++++++.|++||+ ++++|++++++++|++.+++.+...+...+.++...+..++.++.+
T Consensus 82 ~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~--~~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~ 159 (323)
T d2hyda2 82 QYLAQWTSNKILYDIRKKLYNHLQALSARFYA--NNQVGQVISRVINDVEQTKDFILTGLMNIWLDCITIIIALSIMFFL 159 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHH--TSCHHHHHHHHHHHHHHTHHHHHCCCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC--CCCCCCCCCCCCHHHHHHCCCHHHHHHHCCHHHHHHHHHHHHHHHH
T ss_conf 99999999855677888876654023321000--1222110001111332100111345420111466533465440000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 78899999999999999999999998468999999999999999999701799997171799999999998369999999
Q 001411 654 SWRLAAVVAASLPLLIGAFVAEQLFLKGFGGDYNRAYSRATSVAREAIANIRTVAAYGIEKRISIQFASELSQPNKQALL 733 (1082)
Q Consensus 654 ~~~l~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~~~~~~~~~~~~~~~~~~~~~~ 733 (1082)
+|.++++.++..|+.........+..++..++..+..++..+.+.|.++|+++||.++.++.+.+++.+..++..+...+
T Consensus 160 ~~~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~k 239 (323)
T d2hyda2 160 DVKLTLAALFIFPFYILTVYVFFGRLRKLTRERSQALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDKKNTNFLTRALK 239 (323)
T ss_dssp CTTTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHCCCCCCCCHHHH
T ss_conf 14688899998877777776412333202677898999999787887559702346764111002330223111101567
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 99999999999999999999999999999998179898889999999999999999999889999999998999999642
Q 001411 734 RGHISGFGYGVSQLLSLCSYALGLWYASVLIKQKGSNFGDIMKSFMVLIITALAVAETLALAPDIVKGSQALGPVFGILY 813 (1082)
Q Consensus 734 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 813 (1082)
..............+..+..+++++++.+++.+|.+++|+++++..+......|+..+......+.++..+.+|+.++++
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~s~g~l~~~~~~~~~l~~~l~~l~~~~~~~~~~~~s~~Ri~elLd 319 (323)
T d2hyda2 240 HTRWNAYSFAAINTVTDIGPIIVIGVGAYLAISGSITVGTLAAFVGYLELLFGPLRRLVASFTTLTQSFASMDRVFQLID 319 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 76520000111110120558999999999998499889999999999999999999999999999999999999999977
Q ss_pred CCC
Q ss_conf 335
Q 001411 814 RKT 816 (1082)
Q Consensus 814 ~~~ 816 (1082)
+++
T Consensus 320 ~e~ 322 (323)
T d2hyda2 320 EDY 322 (323)
T ss_dssp CCC
T ss_pred CCC
T ss_conf 999
|
| >d3b60a2 f.37.1.1 (A:10-328) Multidrug resistance ABC transporter MsbA, N-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: ABC transporter transmembrane region superfamily: ABC transporter transmembrane region family: ABC transporter transmembrane region domain: Multidrug resistance ABC transporter MsbA, N-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=99.65 E-value=3.8e-13 Score=122.60 Aligned_cols=185 Identities=17% Similarity=0.214 Sum_probs=169.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 57999899999999999997859999999999999999999999999999999999999999999999934999999511
Q 001411 3 TGHALRYLSQFFVGFAVGFTSVWQLTLLTLAVVPLIAVAGGAYTITMSTLSEKGEAAYGEAGKVAEEIISQVRAVYAFVG 82 (1082)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~gi~~ik~~~~ 82 (1082)
....+..+..+++.+..+++.+|.+++++++.+|+..++..+..++..+..++.++..++.++.+.|.++|++++|.++.
T Consensus 134 ~~~~~~~~~~~i~~~~~~~~~~~~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ik~~~~ 213 (319)
T d3b60a2 134 LITVVREGASIIGLFIMMFYYSWQLSIILVVLAPIVSIAIRVVSKRFRSISKNMQNTMGQVTTSAEQMLKGHKEVLIFGG 213 (319)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHTC
T ss_pred CCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEHHC
T ss_conf 20011233445668888876520021025668999999887666687787898876445677887776248723531110
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 49999999999999999979997998788999999999999999999999998087796789999999999999999999
Q 001411 83 EAKAIESYSHSLKEALKQGKKSGVAKGIGVGLTYGLLFCAWALLLWYAGILVRHGDTNGGKAFTTIINVIFSGFALGQAA 162 (1082)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~g~~~~~~~~~~~~~~~l~~~~ 162 (1082)
|+.+.+++++..++..+...+.............++.....++++++|++++.+|.+|+|.+++.+.+......|+..+.
T Consensus 214 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~g~it~g~l~~~~~~~~~~~~pl~~l~ 293 (319)
T d3b60a2 214 QEVETKRFDKVSNKMRLQGMKMVSASSISDPIIQLIASLALAFVLYAASFPSVMDSLTAGTITVVFSSMIALMRPLKSLT 293 (319)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSTTSSSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 10245666665313567788888777740640100000023799999999998099789999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 9999999999999999999721599
Q 001411 163 PNLAAIAKGKAAAANIISIIKENSH 187 (1082)
Q Consensus 163 ~~~~~~~~~~~~~~ri~~~l~~~~~ 187 (1082)
..+..++++.++.+|+.+++|.++|
T Consensus 294 ~~~~~~~~~~~s~~Ri~elld~~~E 318 (319)
T d3b60a2 294 NVNAQFQRGMAACQTLFAILDSEQE 318 (319)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSCCS
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 9999999999999999999669989
|
| >d2hyda2 f.37.1.1 (A:1-323) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: ABC transporter transmembrane region superfamily: ABC transporter transmembrane region family: ABC transporter transmembrane region domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=99.65 E-value=2.8e-13 Score=123.71 Aligned_cols=185 Identities=12% Similarity=0.097 Sum_probs=168.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 57999899999999999997859999999999999999999999999999999999999999999999934999999511
Q 001411 3 TGHALRYLSQFFVGFAVGFTSVWQLTLLTLAVVPLIAVAGGAYTITMSTLSEKGEAAYGEAGKVAEEIISQVRAVYAFVG 82 (1082)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~gi~~ik~~~~ 82 (1082)
+...+..+..+++.++.+++.+|.++++.++..|+..+....+.++.++..++.++..++.++.+.|.++|++++|.+++
T Consensus 139 ~~~~~~~~~~~i~~~~~l~~~~~~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~Ik~~~~ 218 (323)
T d2hyda2 139 LMNIWLDCITIIIALSIMFFLDVKLTLAALFIFPFYILTVYVFFGRLRKLTRERSQALAEVQGFLHERVQGISVVKSFAI 218 (323)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHCTTTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH
T ss_conf 42011146653346544000014688899998877777776412333202677898999999787887559702346764
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 49999999999999999979997998788999999999999999999999998087796789999999999999999999
Q 001411 83 EAKAIESYSHSLKEALKQGKKSGVAKGIGVGLTYGLLFCAWALLLWYAGILVRHGDTNGGKAFTTIINVIFSGFALGQAA 162 (1082)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~g~~~~~~~~~~~~~~~l~~~~ 162 (1082)
|+.+.+++.+..++..+...+.............++..+..++++++|++++.+|.+++|.+++.+.+......|+..+.
T Consensus 219 e~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~s~g~l~~~~~~~~~l~~~l~~l~ 298 (323)
T d2hyda2 219 EDNEAKNFDKKNTNFLTRALKHTRWNAYSFAAINTVTDIGPIIVIGVGAYLAISGSITVGTLAAFVGYLELLFGPLRRLV 298 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHTHHHHTTHHHHHH
T ss_pred HCCCHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 11100233022311110156776520000111110120558999999999998499889999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 9999999999999999999721599
Q 001411 163 PNLAAIAKGKAAAANIISIIKENSH 187 (1082)
Q Consensus 163 ~~~~~~~~~~~~~~ri~~~l~~~~~ 187 (1082)
..+..++++.++.+|+.+++|+++|
T Consensus 299 ~~~~~~~~~~~s~~Ri~elLd~e~e 323 (323)
T d2hyda2 299 ASFTTLTQSFASMDRVFQLIDEDYD 323 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCCCS
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 9999999999999999999779998
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Probab=99.45 E-value=5.4e-15 Score=138.17 Aligned_cols=159 Identities=11% Similarity=0.057 Sum_probs=111.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHHHHCCEEEECCCCCCCCCCHHHHHCCCCCCCCHHHHH
Q ss_conf 89998389997788999881326698418999995079999788733328883667666424788832399887999999
Q 001411 865 SLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRKIGLVQQEPALFSTTIYENIKYGNEDASEIELM 944 (1082)
Q Consensus 865 ~iaIvG~SGsGKSTL~~lL~gl~~p~~G~I~idg~di~~~~~~~lr~~i~~vpQ~~~lf~gTIreNl~~~~~~~~d~ei~ 944 (1082)
+++|+||+|||||||++.++|.++|..|.+.+++.+................++...++..+...+...++.....+.
T Consensus 2 ki~I~G~~G~GKSTLl~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 79 (178)
T d1ye8a1 2 KIIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTGFRIITTEGKKKIFSSKFFTSKKLVGSYGVNVQY-- 79 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGGGEEEEEEEEEC------CCEEEEEETTCCEEEEEETTCCCSSEETTEEECHHH--
T ss_pred EEEEECCCCCHHHHHHHHHHHCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH--
T ss_conf 899998999389999999981488886469987713288887653112336677788754113455443023037625--
Q ss_pred HHHHHHCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHC--CC
Q ss_conf 9999900889996274654442269999899249999999999703998778517778989798999999999861--89
Q 001411 945 KATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLM--EG 1022 (1082)
Q Consensus 945 ~a~~~a~l~~~I~~lp~gldt~i~e~g~~LSgGQkQrlaLARAll~~p~ILiLDEpTS~LD~~te~~I~~~L~~~~--~~ 1022 (1082)
..+|+|++++.++++++.++|+++++|||+...+. .....+.+.+.. .+
T Consensus 80 ---------------------------~~~~~~~~~~~~l~~~~~~~~~vlllDE~~~~~~~--~~~~~~~l~~~l~~~~ 130 (178)
T d1ye8a1 80 ---------------------------FEELAIPILERAYREAKKDRRKVIIIDEIGKMELF--SKKFRDLVRQIMHDPN 130 (178)
T ss_dssp ---------------------------HHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGG--CHHHHHHHHHHHTCTT
T ss_pred ---------------------------HHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCHH--HHHHHHHHHHHHCCCC
T ss_conf ---------------------------66532013789999997409974230277731004--5799999998750579
Q ss_pred CEEEEEECCCHHHHCCCEEEEEECCEEEEECC
Q ss_conf 64999806922553058899995988988259
Q 001411 1023 RTTIMVAHRLSTIRNADKIAVLQQGKVAEIGS 1054 (1082)
Q Consensus 1023 ~TvI~IsHrl~~i~~~DrI~vl~~G~ive~G~ 1054 (1082)
+|+|+++|+.+....+|++..+++|++++.+.
T Consensus 131 ~~il~~~h~~~~~~~~~~i~~~~~~~i~~v~~ 162 (178)
T d1ye8a1 131 VNVVATIPIRDVHPLVKEIRRLPGAVLIELTP 162 (178)
T ss_dssp SEEEEECCSSCCSHHHHHHHTCTTCEEEECCT
T ss_pred CEEEEEECCHHHHHHHCEEEEEECCEEEEECC
T ss_conf 78999974477898636599871999999899
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Probab=99.22 E-value=2.8e-13 Score=123.76 Aligned_cols=158 Identities=12% Similarity=0.036 Sum_probs=100.6
Q ss_pred EEEEECCCCCCHHHHHHHHHHCCCCCCCEEEECCEECCCCCHHHHHHHCEEECCCCCCCHHCHHHHHHCCCCCCCHHHHH
Q ss_conf 99998499880899999997078899767999895078878788841135873677767220999883399999999999
Q 001411 235 TFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNILLGKEDASMDRVI 314 (1082)
Q Consensus 235 ~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~i~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ti~~ni~~~~~~~~~~~~~ 314 (1082)
.++|+||||||||||++.++|++++..|.+..++.+.................+...+.......+...+...
T Consensus 2 ki~I~G~~G~GKSTLl~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------- 74 (178)
T d1ye8a1 2 KIIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTGFRIITTEGKKKIFSSKFFTSKKLVGSYG------- 74 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGGGEEEEEEEEEC------CCEEEEEETTCCEEEEEETTCCCSSEETTEE-------
T ss_pred EEEEECCCCCHHHHHHHHHHHCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------
T ss_conf 8999989993899999999814888864699877132888876531123366777887541134554430230-------
Q ss_pred HHHHHHCHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHH-C-CC
Q ss_conf 999995449888629987554235899989968999999998605699765771754588989799999999977-0-99
Q 001411 315 EAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKI-M-SN 392 (1082)
Q Consensus 315 ~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqrialARal~~~~~illlDEpts~lD~~~~~~i~~~l~~~-~-~~ 392 (1082)
.+. ....+++|++++.++++++..+|+++++|||....+. . ....+.+.+. . .+
T Consensus 75 ------------------~~~----~~~~~~~~~~~~~~l~~~~~~~~~vlllDE~~~~~~~-~-~~~~~~l~~~l~~~~ 130 (178)
T d1ye8a1 75 ------------------VNV----QYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELF-S-KKFRDLVRQIMHDPN 130 (178)
T ss_dssp ------------------ECH----HHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGG-C-HHHHHHHHHHHTCTT
T ss_pred ------------------CCC----CHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCHH-H-HHHHHHHHHHHCCCC
T ss_conf ------------------376----2566532013789999997409974230277731004-5-799999998750579
Q ss_pred CEEEEECCCCCCCCCCCEEEEEECCEEEEEC
Q ss_conf 7399980494300138979999497898841
Q 001411 393 RTTIVVAHRLSTVRDVDTIMVLKNGQVVESG 423 (1082)
Q Consensus 393 ~tvi~vtH~~~~~~~~d~i~~l~~G~i~~~g 423 (1082)
.++|+++|+......+|++..+.+|++.+-+
T Consensus 131 ~~il~~~h~~~~~~~~~~i~~~~~~~i~~v~ 161 (178)
T d1ye8a1 131 VNVVATIPIRDVHPLVKEIRRLPGAVLIELT 161 (178)
T ss_dssp SEEEEECCSSCCSHHHHHHHTCTTCEEEECC
T ss_pred CEEEEEECCHHHHHHHCEEEEEECCEEEEEC
T ss_conf 7899997447789863659987199999989
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.18 E-value=1.5e-09 Score=92.41 Aligned_cols=72 Identities=22% Similarity=0.326 Sum_probs=61.9
Q ss_pred CCCHHHHHHHHHHHHH----CCCCCEEEEECCCCCCCHHHHHHHHHHHHHHC-CCCEEEEEECCCHHHHCCCEEEEE
Q ss_conf 8992499999999997----03998778517778989798999999999861-896499980692255305889999
Q 001411 973 QLSGGQKQRVAIARAI----LKNPSILLLDEATSALDTASENLIQEALDKLM-EGRTTIMVAHRLSTIRNADKIAVL 1044 (1082)
Q Consensus 973 ~LSgGQkQrlaLARAl----l~~p~ILiLDEpTS~LD~~te~~I~~~L~~~~-~~~TvI~IsHrl~~i~~~DrI~vl 1044 (1082)
.+|||||.++++|-.+ ..++|+++||||+++||+.....+.+.|.... .+.-+|+|||++..+..+|+++.+
T Consensus 332 ~lSgGEk~~~~lal~lal~~~~~~pililDE~d~~Ld~~~~~~~~~~l~~~~~~~~Q~I~iTH~~~~~~~ad~~~~V 408 (427)
T d1w1wa_ 332 YLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNTMFEKSDALVGV 408 (427)
T ss_dssp GSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCHHHHTTCSEEEEE
T ss_pred HHCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHCCCEEEE
T ss_conf 32230479999999999954799977999688777899999999999999728998899995878999736617999
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.17 E-value=4.4e-10 Score=96.78 Aligned_cols=73 Identities=22% Similarity=0.308 Sum_probs=61.4
Q ss_pred CCCCHHHHHHHHHHHHC----CCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCC-CCEEEEECCCCCCCCCCCEEEEE
Q ss_conf 98996899999999860----569976577175458898979999999997709-97399980494300138979999
Q 001411 342 TQLSGGQKQRIAIARAV----LRNPKILLLDEATSALDAESELIVQRALEKIMS-NRTTIVVAHRLSTVRDVDTIMVL 414 (1082)
Q Consensus 342 ~~LSgGqkqrialARal----~~~~~illlDEpts~lD~~~~~~i~~~l~~~~~-~~tvi~vtH~~~~~~~~d~i~~l 414 (1082)
..||||||.+++||-.+ ..++++++||||+++||+.....+.+.|..... +.-+|++||++..+..+|+++.+
T Consensus 331 ~~lSgGEk~~~~lal~lal~~~~~~pililDE~d~~Ld~~~~~~~~~~l~~~~~~~~Q~I~iTH~~~~~~~ad~~~~V 408 (427)
T d1w1wa_ 331 EYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNTMFEKSDALVGV 408 (427)
T ss_dssp GGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCHHHHTTCSEEEEE
T ss_pred HHHCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHCCCEEEE
T ss_conf 332230479999999999954799977999688777899999999999999728998899995878999736617999
|
| >d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Thermotoga maritima [TaxId: 2336]
Probab=99.04 E-value=1.2e-08 Score=84.70 Aligned_cols=75 Identities=27% Similarity=0.357 Sum_probs=62.8
Q ss_pred CCCHHHHHHHHHHHH----HCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHCCCEEEE--EEC
Q ss_conf 899249999999999----70399877851777898979899999999986189649998069225530588999--959
Q 001411 973 QLSGGQKQRVAIARA----ILKNPSILLLDEATSALDTASENLIQEALDKLMEGRTTIMVAHRLSTIRNADKIAV--LQQ 1046 (1082)
Q Consensus 973 ~LSgGQkQrlaLARA----ll~~p~ILiLDEpTS~LD~~te~~I~~~L~~~~~~~TvI~IsHrl~~i~~~DrI~v--l~~ 1046 (1082)
.+|+|||+.+.++.. ...+++++++|||-++|++.....+.+.|+...++.-+|++||++..+..+|+++. +++
T Consensus 219 ~~~~g~~~l~~~~~~~~~~~~~~~~~~~iDEpe~~Lhp~~~~~l~~~l~~~~~~~QviitTHsp~~~~~~d~~~~v~~~~ 298 (308)
T d1e69a_ 219 LLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSKHTQFIVITHNKIVMEAADLLHGVTMVN 298 (308)
T ss_dssp GSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHTTTSEEEEECCCTTGGGGCSEEEEEEESS
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHCCCEEEEEEEC
T ss_conf 02577766777776655654226744554320335797899999999998554887999989889997324289999969
Q ss_pred C
Q ss_conf 8
Q 001411 1047 G 1047 (1082)
Q Consensus 1047 G 1047 (1082)
|
T Consensus 299 g 299 (308)
T d1e69a_ 299 G 299 (308)
T ss_dssp S
T ss_pred C
T ss_conf 9
|
| >d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Thermotoga maritima [TaxId: 2336]
Probab=98.99 E-value=1.1e-08 Score=84.84 Aligned_cols=76 Identities=26% Similarity=0.367 Sum_probs=64.8
Q ss_pred CCCCHHHHHHHHHHHH----CCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCEEEE--EE
Q ss_conf 9899689999999986----05699765771754588989799999999977099739998049430013897999--94
Q 001411 342 TQLSGGQKQRIAIARA----VLRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRDVDTIMV--LK 415 (1082)
Q Consensus 342 ~~LSgGqkqrialARa----l~~~~~illlDEpts~lD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~i~~--l~ 415 (1082)
..+|+|||+...++.. ...++.+++.|||-++|++...+.+.+.+.....+.-+|++||++..+..+|+++. ++
T Consensus 218 ~~~~~g~~~l~~~~~~~~~~~~~~~~~~~iDEpe~~Lhp~~~~~l~~~l~~~~~~~QviitTHsp~~~~~~d~~~~v~~~ 297 (308)
T d1e69a_ 218 SLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSKHTQFIVITHNKIVMEAADLLHGVTMV 297 (308)
T ss_dssp GGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHTTTSEEEEECCCTTGGGGCSEEEEEEES
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHCCCEEEEEEE
T ss_conf 10257776677777665565422674455432033579789999999999855488799998988999732428999996
Q ss_pred CC
Q ss_conf 97
Q 001411 416 NG 417 (1082)
Q Consensus 416 ~G 417 (1082)
+|
T Consensus 298 ~g 299 (308)
T d1e69a_ 298 NG 299 (308)
T ss_dssp SS
T ss_pred CC
T ss_conf 99
|
| >d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Gene 4 protein (g4p, DNA primase), helicase domain species: Bacteriophage T7 [TaxId: 10760]
Probab=97.04 E-value=0.0068 Score=36.19 Aligned_cols=35 Identities=20% Similarity=0.270 Sum_probs=27.5
Q ss_pred CCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHHC
Q ss_conf 41010388748989999849988089999999707
Q 001411 222 VFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRL 256 (1082)
Q Consensus 222 ~l~~is~~i~~G~~~~ivG~sGsGKSTll~~l~g~ 256 (1082)
-|+++---+.+|+++.|.|++|+||||++.-++--
T Consensus 24 ~lD~~~~G~~~G~l~vi~G~~G~GKT~~~~~la~~ 58 (277)
T d1cr2a_ 24 GINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQ 58 (277)
T ss_dssp THHHHHCSBCTTCEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHHHH
T ss_conf 68887469789808999947999799999999972
|
| >d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=96.70 E-value=0.014 Score=33.49 Aligned_cols=48 Identities=15% Similarity=0.200 Sum_probs=32.5
Q ss_pred CCCCEEEEECCCCCCCHHHHHHH-HHHHHHHC-CCCEEEEECCCCCCCCC
Q ss_conf 69976577175458898979999-99999770-99739998049430013
Q 001411 360 RNPKILLLDEATSALDAESELIV-QRALEKIM-SNRTTIVVAHRLSTVRD 407 (1082)
Q Consensus 360 ~~~~illlDEpts~lD~~~~~~i-~~~l~~~~-~~~tvi~vtH~~~~~~~ 407 (1082)
.+..++++||...+=++.....+ +..+..+. .+..++++||..+....
T Consensus 113 ~~~sLvliDE~~~gT~~~eg~ala~aile~L~~~~~~~i~tTH~~eL~~l 162 (224)
T d1ewqa2 113 TENSLVLLDEVGRGTSSLDGVAIATAVAEALHERRAYTLFATHYFELTAL 162 (224)
T ss_dssp CTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEECCCHHHHTC
T ss_pred CCCCEEEECCCCCCCCHHHHCCHHHHHHHHHHHCCCCEEEEEECHHHHHH
T ss_conf 97727855454568623320025888888886237613786520233322
|
| >d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=96.58 E-value=0.022 Score=31.83 Aligned_cols=47 Identities=15% Similarity=0.220 Sum_probs=31.0
Q ss_pred CCCCEEEEECCCCCCCHHHHHHH-HHHHHHHC-C-CCEEEEECCCCCCCC
Q ss_conf 69976577175458898979999-99999770-9-973999804943001
Q 001411 360 RNPKILLLDEATSALDAESELIV-QRALEKIM-S-NRTTIVVAHRLSTVR 406 (1082)
Q Consensus 360 ~~~~illlDEpts~lD~~~~~~i-~~~l~~~~-~-~~tvi~vtH~~~~~~ 406 (1082)
.+..++++||+..+=++.....+ ...+..+. . +..++++||..+...
T Consensus 119 ~~~sLvliDE~~~gT~~~eg~~l~~a~l~~l~~~~~~~~i~tTH~~~l~~ 168 (234)
T d1wb9a2 119 TEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELTQ 168 (234)
T ss_dssp CTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCGGGGG
T ss_pred CCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHH
T ss_conf 46608853222358774566678987645432045442898524687764
|
| >d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Gene 4 protein (g4p, DNA primase), helicase domain species: Bacteriophage T7 [TaxId: 10760]
Probab=96.58 E-value=0.022 Score=31.83 Aligned_cols=176 Identities=15% Similarity=0.146 Sum_probs=83.2
Q ss_pred CCCCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHC-CCCCCCCEEEECCCCCCCCCHHHHHCC-EEEECCCCCCCCCCH
Q ss_conf 653012038762895899983899977889998813-266984189999950799997887333-288836676664247
Q 001411 850 ITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMR-FYDPISGTVLIDGYDIRTLNLRSLRRK-IGLVQQEPALFSTTI 927 (1082)
Q Consensus 850 ~~vL~~isl~I~~Ge~iaIvG~SGsGKSTL~~lL~g-l~~p~~G~I~idg~di~~~~~~~lr~~-i~~vpQ~~~lf~gTI 927 (1082)
-+-|+++..-+.+|+.+.|.|++|+||||++.-+.. +..-+.-.+.+-.. +.+.+....+ ++...+-+.-
T Consensus 22 ~~~lD~~~~G~~~G~l~vi~G~~G~GKT~~~~~la~~~a~~~g~~v~~~s~---E~~~~~~~~r~~~~~~~~~~~----- 93 (277)
T d1cr2a_ 22 CTGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAML---EESVEETAEDLIGLHNRVRLR----- 93 (277)
T ss_dssp CTTHHHHHCSBCTTCEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEES---SSCHHHHHHHHHHHHTTCCGG-----
T ss_pred CHHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEEEE---CCCHHHHHHHHHHHHHCCCCH-----
T ss_conf 366888746978980899994799979999999997265533663457640---111135776999986458710-----
Q ss_pred HHHHCCCCCCCCHHHHHHHHHHHCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHH--HCCCCCEEEEECCCCCCC
Q ss_conf 888323998879999999999900889996274654442269999899249999999999--703998778517778989
Q 001411 928 YENIKYGNEDASEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARA--ILKNPSILLLDEATSALD 1005 (1082)
Q Consensus 928 reNl~~~~~~~~d~ei~~a~~~a~l~~~I~~lp~gldt~i~e~g~~LSgGQkQrlaLARA--ll~~p~ILiLDEpTS~LD 1005 (1082)
..+..-....+...+..+.+.+...-....-+........+ .+...+. --.+|+++++|=.+ -++
T Consensus 94 ----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~vvID~l~-~l~ 160 (277)
T d1cr2a_ 94 ----------QSDSLKREIIENGKFDQWFDELFGNDTFHLYDSFAEAETDR--LLAKLAYMRSGLGCDVIILDHIS-IVV 160 (277)
T ss_dssp ----------GCHHHHHHHHHTSHHHHHHHHHHSSSCEEEECCC-CCCHHH--HHHHHHHHHHTTCCSEEEEEEEE-C--
T ss_pred ----------HHCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHH--HHHHHHHHHHCCCCCEEEECCCC-CCC
T ss_conf ----------10122222145677888988740352146621433106899--99986543213676259970542-120
Q ss_pred --------HHHHHHHHHHHHHHC--CCCEEEEEECCCH----------------H------HH-CCCEEEEEEC
Q ss_conf --------798999999999861--8964999806922----------------5------53-0588999959
Q 001411 1006 --------TASENLIQEALDKLM--EGRTTIMVAHRLS----------------T------IR-NADKIAVLQQ 1046 (1082)
Q Consensus 1006 --------~~te~~I~~~L~~~~--~~~TvI~IsHrl~----------------~------i~-~~DrI~vl~~ 1046 (1082)
......+.+.++.+. .+++|++++|=-. . +. .||.++.+..
T Consensus 161 ~~~~~~~~~~~~~~~~~~l~~lA~~~~i~vi~~~q~~r~~~~~~~~~~~~~~~~~~~gS~~i~~~ad~vl~l~r 234 (277)
T d1cr2a_ 161 SASGESDERKMIDNLMTKLKGFAKSTGVVLVVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQLSDTIIALER 234 (277)
T ss_dssp --------CHHHHHHHHHHHHHHHHHCCEEEEEEECC---------------------CHHHHHHCSEEEEEEC
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCCCCCHHHHCCCCCCHHHHCCEEEEEEE
T ss_conf 34654430677899999999976501655203103563224445543333211212343001503869999984
|
| >d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric replicative helicase repA species: Escherichia coli [TaxId: 562]
Probab=96.21 E-value=0.02 Score=32.25 Aligned_cols=30 Identities=37% Similarity=0.517 Sum_probs=24.3
Q ss_pred CCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHH
Q ss_conf 4101038874898999984998808999999970
Q 001411 222 VFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQR 255 (1082)
Q Consensus 222 ~l~~is~~i~~G~~~~ivG~sGsGKSTll~~l~g 255 (1082)
++.+ +.+|+++.|.|++|+|||||+.-++-
T Consensus 22 li~G----~~pg~~~~i~G~~G~GKS~l~l~la~ 51 (274)
T d1nlfa_ 22 VLPN----MVAGTVGALVSPGGAGKSMLALQLAA 51 (274)
T ss_dssp EETT----EETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred HHCC----CCCCCEEEEEECCCCCHHHHHHHHHH
T ss_conf 8689----55895899992899989999999999
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.87 E-value=9.8e-05 Score=51.68 Aligned_cols=35 Identities=20% Similarity=0.105 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCC
Q ss_conf 89998389997788999881326698418999995
Q 001411 865 SLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGY 899 (1082)
Q Consensus 865 ~iaIvG~SGsGKSTL~~lL~gl~~p~~G~I~idg~ 899 (1082)
.+.|+||.|+|||||++.+.+.+....+.+.+.+.
T Consensus 3 ~v~ItG~~GtGKTtl~~~i~~~l~~~~~~v~~~~~ 37 (189)
T d2i3ba1 3 HVFLTGPPGVGKTTLIHKASEVLKSSGVPVDGFYT 37 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHHHHTTCCCEEEEC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEE
T ss_conf 99998899971999999999999977997999984
|
| >d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=95.82 E-value=0.049 Score=28.92 Aligned_cols=47 Identities=21% Similarity=0.273 Sum_probs=34.5
Q ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHH-HC-CCCEEEEEECCCHHHH
Q ss_conf 39987785177789897989999999998-61-8964999806922553
Q 001411 990 KNPSILLLDEATSALDTASENLIQEALDK-LM-EGRTTIMVAHRLSTIR 1036 (1082)
Q Consensus 990 ~~p~ILiLDEpTS~LD~~te~~I~~~L~~-~~-~~~TvI~IsHrl~~i~ 1036 (1082)
.+..++++||..++=|+..-..+-.++-+ +. .+++++++||..+...
T Consensus 113 ~~~sLvliDE~~~gT~~~eg~ala~aile~L~~~~~~~i~tTH~~eL~~ 161 (224)
T d1ewqa2 113 TENSLVLLDEVGRGTSSLDGVAIATAVAEALHERRAYTLFATHYFELTA 161 (224)
T ss_dssp CTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEECCCHHHHT
T ss_pred CCCCEEEECCCCCCCCHHHHCCHHHHHHHHHHHCCCCEEEEEECHHHHH
T ss_conf 9772785545456862332002588888888623761378652023332
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=95.66 E-value=0.0054 Score=36.98 Aligned_cols=34 Identities=24% Similarity=0.287 Sum_probs=15.6
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEE
Q ss_conf 8958999838999778899988132669841899
Q 001411 862 AGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVL 895 (1082)
Q Consensus 862 ~Ge~iaIvG~SGsGKSTL~~lL~gl~~p~~G~I~ 895 (1082)
+|++.+++|+||.|||||++.|.+-..-..|.|.
T Consensus 94 ~~kt~~~~G~SGVGKSTLiN~L~~~~~~~T~~vs 127 (225)
T d1u0la2 94 KGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVS 127 (225)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHSTTCCCC-----
T ss_pred CCCEEEEECCCCCCHHHHHHHHCCHHHHHCCCCC
T ss_conf 6980899788987788887730535550106842
|
| >d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric traffic ATPase, HP0525 species: Helicobacter pylori [TaxId: 210]
Probab=95.64 E-value=0.011 Score=34.25 Aligned_cols=35 Identities=29% Similarity=0.424 Sum_probs=16.5
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHCCCCCCCEEEE
Q ss_conf 89899998499880899999997078899767999
Q 001411 232 AGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILL 266 (1082)
Q Consensus 232 ~G~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~i 266 (1082)
.+..+.|+|+.||||||+++.|+++.++..=-|.+
T Consensus 165 ~~~nili~G~tgSGKTT~l~al~~~i~~~~rivti 199 (323)
T d1g6oa_ 165 IGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISI 199 (323)
T ss_dssp HTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEE
T ss_pred HCCCEEEEEECCCCCHHHHHHHHHHCCCCCCEEEC
T ss_conf 37888999403566257899986530145623311
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=95.62 E-value=0.0055 Score=36.92 Aligned_cols=35 Identities=23% Similarity=0.341 Sum_probs=30.6
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHCCCCCCCEEEE
Q ss_conf 89899998499880899999997078899767999
Q 001411 232 AGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILL 266 (1082)
Q Consensus 232 ~G~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~i 266 (1082)
+|+.++++|+||.|||||++.|.+......|+|.-
T Consensus 94 ~~kt~~~~G~SGVGKSTLiN~L~~~~~~~T~~vs~ 128 (225)
T d1u0la2 94 KGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSE 128 (225)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHSTTCCCC------
T ss_pred CCCEEEEECCCCCCHHHHHHHHCCHHHHHCCCCCC
T ss_conf 69808997889877888877305355501068420
|
| >d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Escherichia coli [TaxId: 562]
Probab=95.54 E-value=0.061 Score=28.14 Aligned_cols=29 Identities=24% Similarity=0.381 Sum_probs=24.1
Q ss_pred EECCCEEEEECCCCCCHHHHHHHHHHCCC
Q ss_conf 74898999984998808999999970788
Q 001411 230 VDAGKTFAFVGPSGSGKSTIISMVQRLYE 258 (1082)
Q Consensus 230 i~~G~~~~ivG~sGsGKSTll~~l~g~~~ 258 (1082)
+.+...+.+.||+|||||++++.++..+.
T Consensus 42 ~~~~~~iLL~GppGtGKT~la~~iA~~~~ 70 (256)
T d1lv7a_ 42 GKIPKGVLMVGPPGTGKTLLAKAIAGEAK 70 (256)
T ss_dssp -CCCCEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCCCCEEEEECCCCCCCCHHHHHHHHHCC
T ss_conf 99888678668998882289999999829
|
| >d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.53 E-value=0.048 Score=29.02 Aligned_cols=30 Identities=23% Similarity=0.489 Sum_probs=25.6
Q ss_pred EEECCCEEEEECCCCCCHHHHHHHHHHCCC
Q ss_conf 874898999984998808999999970788
Q 001411 229 SVDAGKTFAFVGPSGSGKSTIISMVQRLYE 258 (1082)
Q Consensus 229 ~i~~G~~~~ivG~sGsGKSTll~~l~g~~~ 258 (1082)
.+++...+.+.||+|||||+|++.+++.+.
T Consensus 37 g~~~~~giLL~Gp~GtGKT~l~~ala~~~~ 66 (265)
T d1r7ra3 37 GMTPSKGVLFYGPPGCGKTLLAKAIANECQ 66 (265)
T ss_dssp CCCCCCEEEEBCCTTSSHHHHHHHHHHHTT
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHHHC
T ss_conf 999887578878998763047788787718
|
| >d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=95.40 E-value=0.0032 Score=38.88 Aligned_cols=27 Identities=30% Similarity=0.561 Sum_probs=20.5
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHCCCC
Q ss_conf 989999849988089999999707889
Q 001411 233 GKTFAFVGPSGSGKSTIISMVQRLYEP 259 (1082)
Q Consensus 233 G~~~~ivG~sGsGKSTll~~l~g~~~~ 259 (1082)
|+++.|+|||||||||+++.|...++.
T Consensus 2 G~iivl~GpsG~GK~tl~~~L~~~~~~ 28 (182)
T d1znwa1 2 GRVVVLSGPSAVGKSTVVRCLRERIPN 28 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHSTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHCCC
T ss_conf 749999899999999999999845899
|
| >d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric replicative helicase repA species: Escherichia coli [TaxId: 562]
Probab=95.16 E-value=0.078 Score=27.21 Aligned_cols=166 Identities=14% Similarity=0.154 Sum_probs=76.7
Q ss_pred CCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHHHHCCEEEECCCCCCCCCCHHHHH
Q ss_conf 30120387628958999838999778899988132669841899999507999978873332888366766642478883
Q 001411 852 IFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRKIGLVQQEPALFSTTIYENI 931 (1082)
Q Consensus 852 vL~~isl~I~~Ge~iaIvG~SGsGKSTL~~lL~gl~~p~~G~I~idg~di~~~~~~~lr~~i~~vpQ~~~lf~gTIreNl 931 (1082)
++.+ +.||+.+.|.|++|+||||++.-++--.. .|.=.++..... ...+-|+.-+.. ...+.+.+
T Consensus 22 li~G----~~pg~~~~i~G~~G~GKS~l~l~la~~ia--~g~~~~~~~~~~-------~~~vl~~~~E~~--~~~~~~Rl 86 (274)
T d1nlfa_ 22 VLPN----MVAGTVGALVSPGGAGKSMLALQLAAQIA--GGPDLLEVGELP-------TGPVIYLPAEDP--PTAIHHRL 86 (274)
T ss_dssp EETT----EETTSEEEEEESTTSSHHHHHHHHHHHHH--TCCCTTCCCCCC-------CCCEEEEESSSC--HHHHHHHH
T ss_pred HHCC----CCCCCEEEEEECCCCCHHHHHHHHHHHHH--CCCCCCCCCCCC-------CCCEEEEECCCH--HHHHHHHH
T ss_conf 8689----55895899992899989999999999997--699721112357-------873689851234--99999999
Q ss_pred CCCCCCCCHHHHHHHHHHHCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCC-----CH
Q ss_conf 2399887999999999990088999627465444226999989924999999999970399877851777898-----97
Q 001411 932 KYGNEDASEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSAL-----DT 1006 (1082)
Q Consensus 932 ~~~~~~~~d~ei~~a~~~a~l~~~I~~lp~gldt~i~e~g~~LSgGQkQrlaLARAll~~p~ILiLDEpTS~L-----D~ 1006 (1082)
.--..+.+..+...... .+ .+....+.. ....-....-.+ +.-..+++++++|--++-. |.
T Consensus 87 ~~~~~~~~~~~~~~~~~---------~~--~~~~~~~~~--~~~~~~~~~~~~-~~~~~~~~lvviD~l~~~~~~~~~~~ 152 (274)
T d1nlfa_ 87 HALGAHLSAEERQAVAD---------GL--LIQPLIGSL--PNIMAPEWFDGL-KRAAEGRRLMVLDTLRRFHIEEENAS 152 (274)
T ss_dssp HHHHTTSCHHHHHHHHH---------HE--EECCCTTSC--CCTTSHHHHHHH-HHHHTTCSEEEEECGGGGCCSCTTCH
T ss_pred HHHHHCCCHHHHHCCCC---------CC--EECCCCCCC--CHHHHHHHHHHH-HHHCCCCCEEECCCHHHHCCCCCCCH
T ss_conf 99862368666531233---------32--321456742--035789999998-87526765896281354226652322
Q ss_pred HHHHHHHHHHHHHC--CCCEEEEEECCCH------------------HHH-CCCEEEEEEC
Q ss_conf 98999999999861--8964999806922------------------553-0588999959
Q 001411 1007 ASENLIQEALDKLM--EGRTTIMVAHRLS------------------TIR-NADKIAVLQQ 1046 (1082)
Q Consensus 1007 ~te~~I~~~L~~~~--~~~TvI~IsHrl~------------------~i~-~~DrI~vl~~ 1046 (1082)
.....+.+.++.+. .+++++++.|--. .+. .+|.++.|..
T Consensus 153 ~~~~~~~~~l~~la~~~~~~vi~v~H~~K~~~~~~~~~~~~~~~Gssai~~~a~~v~~l~r 213 (274)
T d1nlfa_ 153 GPMAQVIGRMEAIAADTGCSIVFLHHASKGAAMMGAGDQQQASRGSSVLVDNIRWQSYLSS 213 (274)
T ss_dssp HHHHHHHHHHHHHHHHHCCEEEEEEEC--------------------CTGGGCSCEEEEEE
T ss_pred HHHHHHHHHHHHHHHCCCCCEEHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHCCEEEEEEE
T ss_conf 5689999887777644797540131005554446886653356427778742558999983
|
| >d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=95.11 E-value=0.0063 Score=36.45 Aligned_cols=28 Identities=32% Similarity=0.456 Sum_probs=24.6
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCCC
Q ss_conf 9589998389997788999881326698
Q 001411 863 GRSLAVVGQSGSGKSTVISLVMRFYDPI 890 (1082)
Q Consensus 863 Ge~iaIvG~SGsGKSTL~~lL~gl~~p~ 890 (1082)
|..+.|+||||||||||++.|...++..
T Consensus 2 G~iivl~GpsG~GK~tl~~~L~~~~~~~ 29 (182)
T d1znwa1 2 GRVVVLSGPSAVGKSTVVRCLRERIPNL 29 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHSTTC
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHCCCC
T ss_conf 7499998999999999999998458997
|
| >d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=95.11 E-value=0.081 Score=27.10 Aligned_cols=28 Identities=18% Similarity=0.228 Sum_probs=24.8
Q ss_pred EECCCEEEEECCCCCCHHHHHHHHHHCC
Q ss_conf 7489899998499880899999997078
Q 001411 230 VDAGKTFAFVGPSGSGKSTIISMVQRLY 257 (1082)
Q Consensus 230 i~~G~~~~ivG~sGsGKSTll~~l~g~~ 257 (1082)
+++|..+.|.|++|||||+++.-++-..
T Consensus 23 i~~gsl~li~G~pGsGKT~l~~qia~~~ 50 (242)
T d1tf7a2 23 FFKDSIILATGATGTGKTLLVSRFVENA 50 (242)
T ss_dssp EESSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEEEECCCCCHHHHHHHHHHHH
T ss_conf 8698499999189999999999999999
|
| >d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Polynucleotide kinase, kinase domain species: Bacteriophage T4 [TaxId: 10665]
Probab=95.02 E-value=0.023 Score=31.69 Aligned_cols=22 Identities=36% Similarity=0.354 Sum_probs=12.7
Q ss_pred CEEEEECCCCCCHHHHHHHHHH
Q ss_conf 8999984998808999999970
Q 001411 234 KTFAFVGPSGSGKSTIISMVQR 255 (1082)
Q Consensus 234 ~~~~ivG~sGsGKSTll~~l~g 255 (1082)
+++.|+|++||||||+++.|..
T Consensus 3 klIii~G~pGsGKTTla~~L~~ 24 (152)
T d1ly1a_ 3 KIILTIGCPGSGKSTWAREFIA 24 (152)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
T ss_conf 7999989999999999999999
|
| >d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.86 E-value=0.093 Score=26.60 Aligned_cols=24 Identities=33% Similarity=0.347 Sum_probs=17.2
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHH
Q ss_conf 489899998499880899999997
Q 001411 231 DAGKTFAFVGPSGSGKSTIISMVQ 254 (1082)
Q Consensus 231 ~~G~~~~ivG~sGsGKSTll~~l~ 254 (1082)
++-+.+.++|++||||||+.+-+.
T Consensus 12 ~~p~liil~G~pGsGKST~a~~l~ 35 (172)
T d1yj5a2 12 PNPEVVVAVGFPGAGKSTFIQEHL 35 (172)
T ss_dssp SSCCEEEEECCTTSSHHHHHHHHT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHH
T ss_conf 999899998999998999999999
|
| >d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=94.78 E-value=0.097 Score=26.44 Aligned_cols=35 Identities=14% Similarity=0.243 Sum_probs=27.3
Q ss_pred CCCCEEE-EEECCCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 3012038-7628958999838999778899988132
Q 001411 852 IFENLNL-KVSAGRSLAVVGQSGSGKSTVISLVMRF 886 (1082)
Q Consensus 852 vL~~isl-~I~~Ge~iaIvG~SGsGKSTL~~lL~gl 886 (1082)
-|+.+-- -+++|..+-|.|++|+|||+++.-++.-
T Consensus 14 ~LD~~l~GGi~~gsl~li~G~pGsGKT~l~~qia~~ 49 (242)
T d1tf7a2 14 RLDEMCGGGFFKDSIILATGATGTGKTLLVSRFVEN 49 (242)
T ss_dssp HHHHHTTSSEESSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred HHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHHH
T ss_conf 798845689869849999918999999999999999
|
| >d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Escherichia coli [TaxId: 562]
Probab=94.67 E-value=0.012 Score=34.06 Aligned_cols=27 Identities=30% Similarity=0.566 Sum_probs=23.9
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHCCC
Q ss_conf 898999984998808999999970788
Q 001411 232 AGKTFAFVGPSGSGKSTIISMVQRLYE 258 (1082)
Q Consensus 232 ~G~~~~ivG~sGsGKSTll~~l~g~~~ 258 (1082)
+|.++.|+||||+||+||.+.|....+
T Consensus 1 ~G~livi~GPSG~GK~tl~~~L~~~~p 27 (205)
T d1s96a_ 1 QGTLYIVSAPSGAGKSSLIQALLKTQP 27 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 980999999999999999999986398
|
| >d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=94.65 E-value=0.01 Score=34.59 Aligned_cols=27 Identities=30% Similarity=0.315 Sum_probs=21.4
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHHCC
Q ss_conf 489899998499880899999997078
Q 001411 231 DAGKTFAFVGPSGSGKSTIISMVQRLY 257 (1082)
Q Consensus 231 ~~G~~~~ivG~sGsGKSTll~~l~g~~ 257 (1082)
.+|-++.|+|++||||||+.+.|+..+
T Consensus 4 ~~g~~I~l~G~~GsGKTTia~~La~~L 30 (183)
T d1m8pa3 4 TQGFTIFLTGYMNSGKDAIARALQVTL 30 (183)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 997699988999999999999999998
|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein Atu3015 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=94.61 E-value=0.013 Score=33.79 Aligned_cols=35 Identities=31% Similarity=0.447 Sum_probs=26.7
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHCCCCCCCEEEECC
Q ss_conf 8989999849988089999999707889976799989
Q 001411 232 AGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDG 268 (1082)
Q Consensus 232 ~G~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~i~g 268 (1082)
.|+++.|.|++||||||+.+.|...+.. --+.+++
T Consensus 3 ~g~iI~l~G~~GsGKSTia~~La~~lg~--~~~~~~~ 37 (176)
T d1zp6a1 3 GGNILLLSGHPGSGKSTIAEALANLPGV--PKVHFHS 37 (176)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTCSSS--CEEEECT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHCC--CEEEECH
T ss_conf 9859999889999889999999999599--9799068
|
| >d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.43 E-value=0.085 Score=26.90 Aligned_cols=45 Identities=27% Similarity=0.440 Sum_probs=31.2
Q ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCC
Q ss_conf 6997657717545889897999999999770997399980494300
Q 001411 360 RNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTV 405 (1082)
Q Consensus 360 ~~~~illlDEpts~lD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~ 405 (1082)
.+..++++||.-. +.......+.+.+........+|+++++.+-+
T Consensus 130 ~~~~iiiide~d~-l~~~~~~~l~~~~e~~~~~~~~Il~tn~~~~i 174 (252)
T d1sxje2 130 HRYKCVIINEANS-LTKDAQAALRRTMEKYSKNIRLIMVCDSMSPI 174 (252)
T ss_dssp -CCEEEEEECTTS-SCHHHHHHHHHHHHHSTTTEEEEEEESCSCSS
T ss_pred CCCEEEEECCCCC-CCCCCCHHHHCCCCCCCCCCCCEEEECCCCCH
T ss_conf 8724999424333-45431112210022135664300010211100
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=94.39 E-value=0.0055 Score=36.92 Aligned_cols=34 Identities=21% Similarity=0.326 Sum_probs=18.7
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEE
Q ss_conf 8958999838999778899988132669841899
Q 001411 862 AGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVL 895 (1082)
Q Consensus 862 ~Ge~iaIvG~SGsGKSTL~~lL~gl~~p~~G~I~ 895 (1082)
+|++..++|+||.|||||++.|.+-..-..|.|.
T Consensus 96 ~~~~~vl~G~SGVGKSSLiN~L~~~~~~~t~~vs 129 (231)
T d1t9ha2 96 QDKTTVFAGQSGVGKSSLLNAISPELGLRTNEIS 129 (231)
T ss_dssp TTSEEEEEESHHHHHHHHHHHHCC----------
T ss_pred CCCEEEEECCCCCCHHHHHHHHCCHHHHHHCCCC
T ss_conf 3564999877873487898751517676403555
|
| >d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Polynucleotide kinase, kinase domain species: Bacteriophage T4 [TaxId: 10665]
Probab=94.38 E-value=0.12 Score=25.76 Aligned_cols=32 Identities=28% Similarity=0.317 Sum_probs=23.4
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECC
Q ss_conf 58999838999778899988132669841899999
Q 001411 864 RSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDG 898 (1082)
Q Consensus 864 e~iaIvG~SGsGKSTL~~lL~gl~~p~~G~I~idg 898 (1082)
+.+.|+|++||||||+++.|..-. .|...++.
T Consensus 3 klIii~G~pGsGKTTla~~L~~~~---~~~~~~~~ 34 (152)
T d1ly1a_ 3 KIILTIGCPGSGKSTWAREFIAKN---PGFYNINR 34 (152)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHS---TTEEEECH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHC---CCCEEECH
T ss_conf 799998999999999999999957---99799603
|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein Atu3015 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=94.28 E-value=0.019 Score=32.44 Aligned_cols=35 Identities=29% Similarity=0.405 Sum_probs=27.7
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECC
Q ss_conf 8958999838999778899988132669841899999
Q 001411 862 AGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDG 898 (1082)
Q Consensus 862 ~Ge~iaIvG~SGsGKSTL~~lL~gl~~p~~G~I~idg 898 (1082)
.|+.+.|+|++||||||+++.|.+.+.. --+.+|+
T Consensus 3 ~g~iI~l~G~~GsGKSTia~~La~~lg~--~~~~~~~ 37 (176)
T d1zp6a1 3 GGNILLLSGHPGSGKSTIAEALANLPGV--PKVHFHS 37 (176)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTCSSS--CEEEECT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHCC--CEEEECH
T ss_conf 9859999889999889999999999599--9799068
|
| >d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Extracellular secretion NTPase EpsE species: Vibrio cholerae [TaxId: 666]
Probab=94.26 E-value=0.068 Score=27.73 Aligned_cols=114 Identities=17% Similarity=0.275 Sum_probs=66.1
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHHCCCCCCCE-EEECCEECCCCCHHHHHHHCEEECCCCCCCHHCHHHHHHCCCCCCC
Q ss_conf 489899998499880899999997078899767-9998950788787888411358736777672209998833999999
Q 001411 231 DAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGK-ILLDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNILLGKEDAS 309 (1082)
Q Consensus 231 ~~G~~~~ivG~sGsGKSTll~~l~g~~~~~~G~-i~i~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ti~~ni~~~~~~~~ 309 (1082)
.++-.+.+.||+||||||.+..+....+..... +.+.+ ++. +. ...+ .|.+
T Consensus 156 ~~~GliLvtGpTGSGKSTTl~~~l~~~~~~~~~i~tiEd-PiE-~~----~~~~---~q~~------------------- 207 (401)
T d1p9ra_ 156 RPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVED-PIE-FD----IDGI---GQTQ------------------- 207 (401)
T ss_dssp SSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEES-SCC-SC----CSSS---EEEE-------------------
T ss_pred HHHCEEEEECCCCCCCCHHHHHHHHHHCCCCCEEEEECC-CCC-CC----CCCC---CEEE-------------------
T ss_conf 410548987678777447799986662578746999626-743-45----6788---7026-------------------
Q ss_pred HHHHHHHHHHHCHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHH
Q ss_conf 99999999995449888629987554235899989968999999998605699765771754588989799999999977
Q 001411 310 MDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKI 389 (1082)
Q Consensus 310 ~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqrialARal~~~~~illlDEpts~lD~~~~~~i~~~l~~~ 389 (1082)
+.+ ..|+.---++..++-.+|++++..|.. |.++.....+. .
T Consensus 208 ---------------------------v~~-----~~~~~~~~~l~~~lR~dPDvi~igEiR---d~~ta~~a~~a---a 249 (401)
T d1p9ra_ 208 ---------------------------VNP-----RVDMTFARGLRAILRQDPDVVMVGEIR---DLETAQIAVQA---S 249 (401)
T ss_dssp ---------------------------CBG-----GGTBCHHHHHHHHGGGCCSEEEESCCC---SHHHHHHHHHH---H
T ss_pred ---------------------------ECC-----CCCCCHHHHHHHHHHHCCCEEEECCCC---CHHHHHHHHHH---H
T ss_conf ---------------------------558-----767799999999984138889845768---75999999999---7
Q ss_pred CCCCEEEEECCCCCCCCCCCE
Q ss_conf 099739998049430013897
Q 001411 390 MSNRTTIVVAHRLSTVRDVDT 410 (1082)
Q Consensus 390 ~~~~tvi~vtH~~~~~~~~d~ 410 (1082)
..|+.|+-.-|-.+.....+|
T Consensus 250 ~tGhlV~tTlHa~~a~~~~~R 270 (401)
T d1p9ra_ 250 LTGHLVMSTLHTNTAVGAVTR 270 (401)
T ss_dssp HTTCEEEEEECCSSSHHHHHH
T ss_pred HCCCEEEEEECCCCHHHHHHH
T ss_conf 249858998336766766543
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=94.20 E-value=0.0057 Score=36.81 Aligned_cols=35 Identities=29% Similarity=0.407 Sum_probs=30.7
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHCCCCCCCEEEE
Q ss_conf 89899998499880899999997078899767999
Q 001411 232 AGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILL 266 (1082)
Q Consensus 232 ~G~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~i 266 (1082)
+|+.++++|+||.|||||++.|.+......|.|.-
T Consensus 96 ~~~~~vl~G~SGVGKSSLiN~L~~~~~~~t~~vs~ 130 (231)
T d1t9ha2 96 QDKTTVFAGQSGVGKSSLLNAISPELGLRTNEISE 130 (231)
T ss_dssp TTSEEEEEESHHHHHHHHHHHHCC-----------
T ss_pred CCCEEEEECCCCCCHHHHHHHHCCHHHHHHCCCCC
T ss_conf 35649998778734878987515176764035553
|
| >d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Escherichia coli [TaxId: 562]
Probab=94.16 E-value=0.021 Score=32.11 Aligned_cols=51 Identities=22% Similarity=0.282 Sum_probs=34.6
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCE--E----------EECCCCCCCCCHHHHHCC
Q ss_conf 89589998389997788999881326698418--9----------999950799997887333
Q 001411 862 AGRSLAVVGQSGSGKSTVISLVMRFYDPISGT--V----------LIDGYDIRTLNLRSLRRK 912 (1082)
Q Consensus 862 ~Ge~iaIvG~SGsGKSTL~~lL~gl~~p~~G~--I----------~idg~di~~~~~~~lr~~ 912 (1082)
+|..+.|+|||||||+||.+.|...++...-. | ..||+|..-++.+.+.+.
T Consensus 1 ~G~livi~GPSG~GK~tl~~~L~~~~p~~~~~~~is~TTR~~R~~E~~G~dY~Fvs~~~F~~~ 63 (205)
T d1s96a_ 1 QGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRPGEVHGEHYFFVNHDEFKEM 63 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCTTCCBTTTBEECCHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCCCEEECHHHHHHH
T ss_conf 980999999999999999999986398668427888763678865543212334328999987
|
| >d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Probable kinase LmjF30.1890 species: Leishmania major [TaxId: 5664]
Probab=94.12 E-value=0.019 Score=32.40 Aligned_cols=28 Identities=21% Similarity=0.490 Sum_probs=23.3
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHHCCC
Q ss_conf 4898999984998808999999970788
Q 001411 231 DAGKTFAFVGPSGSGKSTIISMVQRLYE 258 (1082)
Q Consensus 231 ~~G~~~~ivG~sGsGKSTll~~l~g~~~ 258 (1082)
++|-.+.|.|++||||||+.+.|+..+.
T Consensus 3 pk~~~I~i~G~~GsGKTT~~~~La~~l~ 30 (174)
T d1y63a_ 3 PKGINILITGTPGTGKTSMAEMIAAELD 30 (174)
T ss_dssp CSSCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHHC
T ss_conf 9988899982899988999999999858
|
| >d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.10 E-value=0.13 Score=25.32 Aligned_cols=26 Identities=15% Similarity=0.323 Sum_probs=12.0
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 89589998389997788999881326
Q 001411 862 AGRSLAVVGQSGSGKSTVISLVMRFY 887 (1082)
Q Consensus 862 ~Ge~iaIvG~SGsGKSTL~~lL~gl~ 887 (1082)
+...+-+.||+|+|||++++.+++.+
T Consensus 40 ~~~giLL~Gp~GtGKT~l~~ala~~~ 65 (265)
T d1r7ra3 40 PSKGVLFYGPPGCGKTLLAKAIANEC 65 (265)
T ss_dssp CCCEEEEBCCTTSSHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHH
T ss_conf 88757887899876304778878771
|
| >d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein rbstp0775 species: Bacillus stearothermophilus [TaxId: 1422]
Probab=94.06 E-value=0.017 Score=32.77 Aligned_cols=25 Identities=24% Similarity=0.349 Sum_probs=20.4
Q ss_pred EEEEECCCCCCHHHHHHHHHHCCCC
Q ss_conf 9999849988089999999707889
Q 001411 235 TFAFVGPSGSGKSTIISMVQRLYEP 259 (1082)
Q Consensus 235 ~~~ivG~sGsGKSTll~~l~g~~~~ 259 (1082)
+++|.|++|||||||.+.|...+..
T Consensus 24 iIgI~G~~GSGKSTla~~L~~~l~~ 48 (198)
T d1rz3a_ 24 VLGIDGLSRSGKTTLANQLSQTLRE 48 (198)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCC
T ss_conf 9997898878999999999998363
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Probab=94.04 E-value=0.01 Score=34.64 Aligned_cols=26 Identities=27% Similarity=0.373 Sum_probs=20.9
Q ss_pred EEEEECCCCCCHHHHHHHHHHCCCCC
Q ss_conf 99998499880899999997078899
Q 001411 235 TFAFVGPSGSGKSTIISMVQRLYEPT 260 (1082)
Q Consensus 235 ~~~ivG~sGsGKSTll~~l~g~~~~~ 260 (1082)
+++|+|++|||||||++-|...+...
T Consensus 4 vi~itG~~GSGKTTL~~~L~~~l~~~ 29 (170)
T d1np6a_ 4 LLAFAAWSGTGKTTLLKKLIPALCAR 29 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC
T ss_conf 89999189998999999999999977
|
| >d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=93.99 E-value=0.028 Score=31.04 Aligned_cols=23 Identities=30% Similarity=0.407 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHHHCC
Q ss_conf 99998499880899999997078
Q 001411 235 TFAFVGPSGSGKSTIISMVQRLY 257 (1082)
Q Consensus 235 ~~~ivG~sGsGKSTll~~l~g~~ 257 (1082)
.++|+|++|+|||||++.|.|.-
T Consensus 10 kV~iiG~~~~GKSTLin~l~~~~ 32 (186)
T d1mkya2 10 KVAIVGRPNVGKSTLFNAILNKE 32 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHTST
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89999999999999999997787
|
| >d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Escherichia coli [TaxId: 562]
Probab=93.97 E-value=0.14 Score=25.13 Aligned_cols=40 Identities=20% Similarity=0.249 Sum_probs=26.1
Q ss_pred EEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCC
Q ss_conf 762895899983899977889998813266984189999950
Q 001411 859 KVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYD 900 (1082)
Q Consensus 859 ~I~~Ge~iaIvG~SGsGKSTL~~lL~gl~~p~~G~I~idg~d 900 (1082)
.+++...+-+.||+|+|||++++.+++.+.. =-+.++..+
T Consensus 41 g~~~~~~iLL~GppGtGKT~la~~iA~~~~~--~~~~i~~~~ 80 (256)
T d1lv7a_ 41 GGKIPKGVLMVGPPGTGKTLLAKAIAGEAKV--PFFTISGSD 80 (256)
T ss_dssp --CCCCEEEEECCTTSCHHHHHHHHHHHHTC--CEEEECSCS
T ss_pred CCCCCCEEEEECCCCCCCCHHHHHHHHHCCC--CEEEEEHHH
T ss_conf 9998886786689988822899999998299--879988699
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Probab=93.80 E-value=0.013 Score=33.86 Aligned_cols=26 Identities=27% Similarity=0.319 Sum_probs=22.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCC
Q ss_conf 89998389997788999881326698
Q 001411 865 SLAVVGQSGSGKSTVISLVMRFYDPI 890 (1082)
Q Consensus 865 ~iaIvG~SGsGKSTL~~lL~gl~~p~ 890 (1082)
.++|+|++|||||||++-|.+.+...
T Consensus 4 vi~itG~~GSGKTTL~~~L~~~l~~~ 29 (170)
T d1np6a_ 4 LLAFAAWSGTGKTTLLKKLIPALCAR 29 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC
T ss_conf 89999189998999999999999977
|
| >d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=93.69 E-value=0.15 Score=24.75 Aligned_cols=46 Identities=20% Similarity=0.183 Sum_probs=32.4
Q ss_pred CCCCEEEEECCCCCCCHHHHHHHHHH-HHHHC--CCCEEEEEECCCHHH
Q ss_conf 39987785177789897989999999-99861--896499980692255
Q 001411 990 KNPSILLLDEATSALDTASENLIQEA-LDKLM--EGRTTIMVAHRLSTI 1035 (1082)
Q Consensus 990 ~~p~ILiLDEpTS~LD~~te~~I~~~-L~~~~--~~~TvI~IsHrl~~i 1035 (1082)
.+..++++||..++=++..-..+..+ +..+. .++.+++.||..+..
T Consensus 119 ~~~sLvliDE~~~gT~~~eg~~l~~a~l~~l~~~~~~~~i~tTH~~~l~ 167 (234)
T d1wb9a2 119 TEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELT 167 (234)
T ss_dssp CTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCGGGG
T ss_pred CCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHH
T ss_conf 4660885322235877456667898764543204544289852468776
|
| >d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Chloramphenicol phosphotransferase domain: Chloramphenicol phosphotransferase species: Streptomyces venezuelae [TaxId: 54571]
Probab=93.66 E-value=0.027 Score=31.18 Aligned_cols=26 Identities=27% Similarity=0.414 Sum_probs=20.8
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHCCC
Q ss_conf 98999984998808999999970788
Q 001411 233 GKTFAFVGPSGSGKSTIISMVQRLYE 258 (1082)
Q Consensus 233 G~~~~ivG~sGsGKSTll~~l~g~~~ 258 (1082)
.+++.|.|++||||||+.+.|...+.
T Consensus 3 ~kiI~l~G~~GsGKsTva~~L~~~l~ 28 (178)
T d1qhxa_ 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 85999989999998999999999728
|
| >d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric traffic ATPase, HP0525 species: Helicobacter pylori [TaxId: 210]
Probab=93.61 E-value=0.024 Score=31.62 Aligned_cols=41 Identities=29% Similarity=0.494 Sum_probs=33.2
Q ss_pred EEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEC
Q ss_conf 38762895899983899977889998813266984189999
Q 001411 857 NLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLID 897 (1082)
Q Consensus 857 sl~I~~Ge~iaIvG~SGsGKSTL~~lL~gl~~p~~G~I~id 897 (1082)
..-++.|..+.|+|++||||||+++.|++..+|..=-|.|-
T Consensus 160 ~~~v~~~~nili~G~tgSGKTT~l~al~~~i~~~~rivtiE 200 (323)
T d1g6oa_ 160 KDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIE 200 (323)
T ss_dssp HHHHHHTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEE
T ss_pred HHHHHHCCCEEEEEECCCCCHHHHHHHHHHCCCCCCEEECC
T ss_conf 99998378889994035662578999865301456233113
|
| >d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Pantothenate kinase PanK species: Escherichia coli [TaxId: 562]
Probab=93.55 E-value=0.034 Score=30.33 Aligned_cols=45 Identities=20% Similarity=0.309 Sum_probs=31.8
Q ss_pred EEEEECCCCCCHHHHHHHHHHCCCCCCCEEEECCEECCCCCHHHHHHHCEEECCCCCCCHHC
Q ss_conf 99998499880899999997078899767999895078878788841135873677767220
Q 001411 235 TFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGLVSQEPALFATS 296 (1082)
Q Consensus 235 ~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~i~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~t 296 (1082)
+++|.|++||||||+.+.|...+....+. .++..+++|.+..+..
T Consensus 82 iIGIaG~sgSGKSTla~~L~~lL~~~~~~-----------------~~v~~Is~D~F~~~~~ 126 (308)
T d1sq5a_ 82 IISIAGSVAVGKSTTARVLQALLSRWPEH-----------------RRVELITTDGFLHPNQ 126 (308)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHTTSTTC-----------------CCEEEEEGGGGBCCHH
T ss_pred EEEEECCCCCCCCHHHHHHHHHHHHHCCC-----------------CCEEEEEEEEEECCCH
T ss_conf 99996899998768999999997304689-----------------9659995215689845
|
| >d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Uridine-cytidine kinase 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.53 E-value=0.026 Score=31.30 Aligned_cols=24 Identities=25% Similarity=0.418 Sum_probs=20.7
Q ss_pred EEEEECCCCCCHHHHHHHHHHCCC
Q ss_conf 999984998808999999970788
Q 001411 235 TFAFVGPSGSGKSTIISMVQRLYE 258 (1082)
Q Consensus 235 ~~~ivG~sGsGKSTll~~l~g~~~ 258 (1082)
++||.|++||||||+.+.|...+.
T Consensus 4 iIgI~G~~gSGKSTla~~L~~~l~ 27 (213)
T d1uj2a_ 4 LIGVSGGTASGKSSVCAKIVQLLG 27 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 999989997879999999999964
|
| >d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain species: Haemophilus influenzae [TaxId: 727]
Probab=93.37 E-value=0.02 Score=32.14 Aligned_cols=24 Identities=33% Similarity=0.613 Sum_probs=21.3
Q ss_pred CEEEEECCCCCCHHHHHHHHHHCC
Q ss_conf 899998499880899999997078
Q 001411 234 KTFAFVGPSGSGKSTIISMVQRLY 257 (1082)
Q Consensus 234 ~~~~ivG~sGsGKSTll~~l~g~~ 257 (1082)
+.++|+|++|||||||++.|+..+
T Consensus 8 K~I~i~G~~GsGKTTla~~La~~~ 31 (192)
T d1lw7a2 8 KTVAILGGESSGKSVLVNKLAAVF 31 (192)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 289998999998999999999984
|
| >d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Bacillus subtilis [TaxId: 1423]
Probab=93.35 E-value=0.027 Score=31.12 Aligned_cols=23 Identities=30% Similarity=0.387 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHHHCC
Q ss_conf 99998499880899999997078
Q 001411 235 TFAFVGPSGSGKSTIISMVQRLY 257 (1082)
Q Consensus 235 ~~~ivG~sGsGKSTll~~l~g~~ 257 (1082)
.++|+|++|+|||||++.|.|.-
T Consensus 25 ~I~lvG~~n~GKSTLin~L~g~~ 47 (195)
T d1svia_ 25 EIALAGRSNVGKSSFINSLINRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTC-
T ss_pred EEEEECCCCCCHHHHHHHHCCCC
T ss_conf 99998999987999999852987
|
| >d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Pantothenate kinase PanK species: Escherichia coli [TaxId: 562]
Probab=93.35 E-value=0.021 Score=32.11 Aligned_cols=48 Identities=17% Similarity=0.354 Sum_probs=33.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHHHHCCEEEECCCCCCCCCCHHH
Q ss_conf 89998389997788999881326698418999995079999788733328883667666424788
Q 001411 865 SLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRKIGLVQQEPALFSTTIYE 929 (1082)
Q Consensus 865 ~iaIvG~SGsGKSTL~~lL~gl~~p~~G~I~idg~di~~~~~~~lr~~i~~vpQ~~~lf~gTIre 929 (1082)
.|||.|++||||||+++.|..+..-..+ ..++..|++|.+..+...++
T Consensus 82 iIGIaG~sgSGKSTla~~L~~lL~~~~~-----------------~~~v~~Is~D~F~~~~~~l~ 129 (308)
T d1sq5a_ 82 IISIAGSVAVGKSTTARVLQALLSRWPE-----------------HRRVELITTDGFLHPNQVLK 129 (308)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHTTSTT-----------------CCCEEEEEGGGGBCCHHHHH
T ss_pred EEEEECCCCCCCCHHHHHHHHHHHHHCC-----------------CCCEEEEEEEEEECCCHHHH
T ss_conf 9999689999876899999999730468-----------------99659995215689845888
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.34 E-value=0.0004 Score=46.58 Aligned_cols=35 Identities=20% Similarity=0.284 Sum_probs=28.4
Q ss_pred CEEEEECCCCCCHHHHHHHHHHCCCCCCCEEEECC
Q ss_conf 89999849988089999999707889976799989
Q 001411 234 KTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDG 268 (1082)
Q Consensus 234 ~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~i~g 268 (1082)
+.+.|+||+|+|||||++.+++.+....+.+.+.+
T Consensus 2 k~v~ItG~~GtGKTtl~~~i~~~l~~~~~~v~~~~ 36 (189)
T d2i3ba1 2 RHVFLTGPPGVGKTTLIHKASEVLKSSGVPVDGFY 36 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHHHHHTTCCCEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEE
T ss_conf 69999889997199999999999997799799998
|
| >d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Bacillus stearothermophilus [TaxId: 1422]
Probab=93.34 E-value=0.022 Score=31.90 Aligned_cols=26 Identities=23% Similarity=0.247 Sum_probs=18.2
Q ss_pred CEEEEECCCCCCHHHHHHHHHHCCCC
Q ss_conf 89999849988089999999707889
Q 001411 234 KTFAFVGPSGSGKSTIISMVQRLYEP 259 (1082)
Q Consensus 234 ~~~~ivG~sGsGKSTll~~l~g~~~~ 259 (1082)
++++|+|++|||||||+.-|...+..
T Consensus 2 kii~I~G~~gSGKTTli~~l~~~L~~ 27 (165)
T d1xjca_ 2 NVWQVVGYKHSGKTTLMEKWVAAAVR 27 (165)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCHHHHHHHHHHHHHH
T ss_conf 09999809999899999999999986
|
| >d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=93.23 E-value=0.029 Score=30.87 Aligned_cols=28 Identities=18% Similarity=0.301 Sum_probs=25.1
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 2895899983899977889998813266
Q 001411 861 SAGRSLAVVGQSGSGKSTVISLVMRFYD 888 (1082)
Q Consensus 861 ~~Ge~iaIvG~SGsGKSTL~~lL~gl~~ 888 (1082)
++|-.|.|+|.+||||||+++.|..-+.
T Consensus 4 ~~g~~I~l~G~~GsGKTTia~~La~~L~ 31 (183)
T d1m8pa3 4 TQGFTIFLTGYMNSGKDAIARALQVTLN 31 (183)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 9976999889999999999999999986
|
| >d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Gluconate kinase domain: Gluconate kinase species: Escherichia coli [TaxId: 562]
Probab=93.22 E-value=0.028 Score=31.02 Aligned_cols=27 Identities=33% Similarity=0.502 Sum_probs=21.9
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHHCC
Q ss_conf 489899998499880899999997078
Q 001411 231 DAGKTFAFVGPSGSGKSTIISMVQRLY 257 (1082)
Q Consensus 231 ~~G~~~~ivG~sGsGKSTll~~l~g~~ 257 (1082)
+.+.++.|.|++||||||+.+.|+..+
T Consensus 4 ~~~~iivl~G~~GsGKsT~a~~La~~l 30 (171)
T d1knqa_ 4 HDHHIYVLMGVSGSGKSAVASEVAHQL 30 (171)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 987189998999989899999999986
|
| >d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein rbstp0775 species: Bacillus stearothermophilus [TaxId: 1422]
Probab=93.18 E-value=0.032 Score=30.53 Aligned_cols=25 Identities=28% Similarity=0.336 Sum_probs=22.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 8999838999778899988132669
Q 001411 865 SLAVVGQSGSGKSTVISLVMRFYDP 889 (1082)
Q Consensus 865 ~iaIvG~SGsGKSTL~~lL~gl~~p 889 (1082)
.|||.|++||||||+++.|...+..
T Consensus 24 iIgI~G~~GSGKSTla~~L~~~l~~ 48 (198)
T d1rz3a_ 24 VLGIDGLSRSGKTTLANQLSQTLRE 48 (198)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCC
T ss_conf 9997898878999999999998363
|
| >d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Chloramphenicol phosphotransferase domain: Chloramphenicol phosphotransferase species: Streptomyces venezuelae [TaxId: 54571]
Probab=93.17 E-value=0.039 Score=29.74 Aligned_cols=26 Identities=23% Similarity=0.367 Sum_probs=23.6
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 95899983899977889998813266
Q 001411 863 GRSLAVVGQSGSGKSTVISLVMRFYD 888 (1082)
Q Consensus 863 Ge~iaIvG~SGsGKSTL~~lL~gl~~ 888 (1082)
.+.|.|.|++||||||+++.|...+.
T Consensus 3 ~kiI~l~G~~GsGKsTva~~L~~~l~ 28 (178)
T d1qhxa_ 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 85999989999998999999999728
|
| >d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.10 E-value=0.015 Score=33.38 Aligned_cols=27 Identities=30% Similarity=0.414 Sum_probs=22.9
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHCCC
Q ss_conf 898999984998808999999970788
Q 001411 232 AGKTFAFVGPSGSGKSTIISMVQRLYE 258 (1082)
Q Consensus 232 ~G~~~~ivG~sGsGKSTll~~l~g~~~ 258 (1082)
+|-++.++|++||||||+.+.|+..+.
T Consensus 18 ~g~vI~L~G~pGSGKTTiAk~La~~l~ 44 (195)
T d1x6va3 18 RGCTVWLTGLSGAGKTTVSMALEEYLV 44 (195)
T ss_dssp CCEEEEEESSCHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 996999889999999999999999997
|
| >d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=93.09 E-value=0.015 Score=33.34 Aligned_cols=43 Identities=28% Similarity=0.319 Sum_probs=28.5
Q ss_pred EEEECCCEEEEECCCCCCHHHHHHHHHHCCCCC--CCEEEECCEE
Q ss_conf 887489899998499880899999997078899--7679998950
Q 001411 228 FSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPT--SGKILLDGHD 270 (1082)
Q Consensus 228 ~~i~~G~~~~ivG~sGsGKSTll~~l~g~~~~~--~G~i~i~g~~ 270 (1082)
+.-.+|.++.++|.|||||||+.+.|...+... .-.+.++|.+
T Consensus 19 ~~~~kg~vIwltGlsGsGKTTia~~L~~~l~~~~~~~~~~ldgD~ 63 (208)
T d1m7ga_ 19 LRNQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDN 63 (208)
T ss_dssp HHTSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHH
T ss_pred HHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCEEEEECCHH
T ss_conf 858998699998999999899999999887774275089975367
|
| >d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Probable kinase LmjF30.1890 species: Leishmania major [TaxId: 5664]
Probab=92.94 E-value=0.042 Score=29.49 Aligned_cols=28 Identities=21% Similarity=0.526 Sum_probs=25.3
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 2895899983899977889998813266
Q 001411 861 SAGRSLAVVGQSGSGKSTVISLVMRFYD 888 (1082)
Q Consensus 861 ~~Ge~iaIvG~SGsGKSTL~~lL~gl~~ 888 (1082)
++|-.+.|.|++||||||+++.|..-+.
T Consensus 3 pk~~~I~i~G~~GsGKTT~~~~La~~l~ 30 (174)
T d1y63a_ 3 PKGINILITGTPGTGKTSMAEMIAAELD 30 (174)
T ss_dssp CSSCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHHC
T ss_conf 9988899982899988999999999858
|
| >d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain species: Haemophilus influenzae [TaxId: 727]
Probab=92.89 E-value=0.032 Score=30.46 Aligned_cols=25 Identities=24% Similarity=0.604 Sum_probs=22.6
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 5899983899977889998813266
Q 001411 864 RSLAVVGQSGSGKSTVISLVMRFYD 888 (1082)
Q Consensus 864 e~iaIvG~SGsGKSTL~~lL~gl~~ 888 (1082)
++|+|+|++|||||||++.|...+.
T Consensus 8 K~I~i~G~~GsGKTTla~~La~~~~ 32 (192)
T d1lw7a2 8 KTVAILGGESSGKSVLVNKLAAVFN 32 (192)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHHTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 2899989999989999999999849
|
| >d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Gluconate kinase domain: Gluconate kinase species: Escherichia coli [TaxId: 562]
Probab=92.85 E-value=0.035 Score=30.15 Aligned_cols=27 Identities=37% Similarity=0.394 Sum_probs=24.1
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 289589998389997788999881326
Q 001411 861 SAGRSLAVVGQSGSGKSTVISLVMRFY 887 (1082)
Q Consensus 861 ~~Ge~iaIvG~SGsGKSTL~~lL~gl~ 887 (1082)
+.+..+.|+|++||||||+++.|..-+
T Consensus 4 ~~~~iivl~G~~GsGKsT~a~~La~~l 30 (171)
T d1knqa_ 4 HDHHIYVLMGVSGSGKSAVASEVAHQL 30 (171)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 987189998999989899999999986
|
| >d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-inducible GTPase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=92.70 E-value=0.052 Score=28.69 Aligned_cols=28 Identities=32% Similarity=0.554 Sum_probs=22.9
Q ss_pred EEEEECCCCCCHHHHHHHHHHCCCCCCC
Q ss_conf 9999849988089999999707889976
Q 001411 235 TFAFVGPSGSGKSTIISMVQRLYEPTSG 262 (1082)
Q Consensus 235 ~~~ivG~sGsGKSTll~~l~g~~~~~~G 262 (1082)
.++|+|.+|+|||||++.|.|.-.-..|
T Consensus 58 ~Iai~G~~n~GKSSLiNaL~G~~~~~~~ 85 (400)
T d1tq4a_ 58 NVAVTGETGSGKSSFINTLRGIGNEEEG 85 (400)
T ss_dssp EEEEEECTTSSHHHHHHHHHTCCTTSTT
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCC
T ss_conf 7999899999789999999588867775
|
| >d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.65 E-value=0.21 Score=23.59 Aligned_cols=44 Identities=23% Similarity=0.391 Sum_probs=33.3
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCHHH
Q ss_conf 998778517778989798999999999861896499980692255
Q 001411 991 NPSILLLDEATSALDTASENLIQEALDKLMEGRTTIMVAHRLSTI 1035 (1082)
Q Consensus 991 ~p~ILiLDEpTS~LD~~te~~I~~~L~~~~~~~TvI~IsHrl~~i 1035 (1082)
+.+++++||+-. |.......+.+.+.....++..|++|++.+.+
T Consensus 131 ~~~iiiide~d~-l~~~~~~~l~~~~e~~~~~~~~Il~tn~~~~i 174 (252)
T d1sxje2 131 RYKCVIINEANS-LTKDAQAALRRTMEKYSKNIRLIMVCDSMSPI 174 (252)
T ss_dssp CCEEEEEECTTS-SCHHHHHHHHHHHHHSTTTEEEEEEESCSCSS
T ss_pred CCEEEEECCCCC-CCCCCCHHHHCCCCCCCCCCCCEEEECCCCCH
T ss_conf 724999424333-45431112210022135664300010211100
|
| >d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Bacillus stearothermophilus [TaxId: 1422]
Probab=92.64 E-value=0.031 Score=30.61 Aligned_cols=37 Identities=30% Similarity=0.242 Sum_probs=27.0
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCC---CCEEEECCCC
Q ss_conf 589998389997788999881326698---4189999950
Q 001411 864 RSLAVVGQSGSGKSTVISLVMRFYDPI---SGTVLIDGYD 900 (1082)
Q Consensus 864 e~iaIvG~SGsGKSTL~~lL~gl~~p~---~G~I~idg~d 900 (1082)
..++|+|++|||||||+.-|.+.+... -|.|.-++.+
T Consensus 2 kii~I~G~~gSGKTTli~~l~~~L~~~g~~v~vik~d~~~ 41 (165)
T d1xjca_ 2 NVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVKHHGHG 41 (165)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC--
T ss_pred CEEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCC
T ss_conf 0999980999989999999999998679837999831676
|
| >d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Chloroplast protein translocon GTPase Toc34 species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=92.53 E-value=0.044 Score=29.36 Aligned_cols=23 Identities=26% Similarity=0.394 Sum_probs=20.9
Q ss_pred EEEEECCCCCCHHHHHHHHHHCC
Q ss_conf 99998499880899999997078
Q 001411 235 TFAFVGPSGSGKSTIISMVQRLY 257 (1082)
Q Consensus 235 ~~~ivG~sGsGKSTll~~l~g~~ 257 (1082)
.++|+|.+|+|||||++.|.|.-
T Consensus 34 ~I~LvG~tg~GKSSliN~ilg~~ 56 (257)
T d1h65a_ 34 TILVMGKGGVGKSSTVNSIIGER 56 (257)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89998999986999999985898
|
| >d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Uridine-cytidine kinase 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.44 E-value=0.048 Score=29.02 Aligned_cols=45 Identities=20% Similarity=0.326 Sum_probs=30.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHHHHCCEEEECCCCCCC
Q ss_conf 89998389997788999881326698418999995079999788733328883667666
Q 001411 865 SLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRKIGLVQQEPALF 923 (1082)
Q Consensus 865 ~iaIvG~SGsGKSTL~~lL~gl~~p~~G~I~idg~di~~~~~~~lr~~i~~vpQ~~~lf 923 (1082)
.|||.|++||||||+.+.|...+.-.. .+ .-...+.++++|.+..
T Consensus 4 iIgI~G~~gSGKSTla~~L~~~l~~~~-------~~-------~~~~~~~vi~~D~yy~ 48 (213)
T d1uj2a_ 4 LIGVSGGTASGKSSVCAKIVQLLGQNE-------VD-------YRQKQVVILSQDSFYR 48 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTTGGG-------SC-------GGGCSEEEEEGGGGBC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCHHC-------CC-------CCCCCEEEEECCCCCC
T ss_conf 999989997879999999999964101-------34-------5788439993465322
|
| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein BH3686 species: Bacillus halodurans [TaxId: 86665]
Probab=92.42 E-value=0.043 Score=29.42 Aligned_cols=32 Identities=28% Similarity=0.555 Sum_probs=24.2
Q ss_pred CEEEEECCCCCCHHHHHHHHHHCCCCCCCEEEECC
Q ss_conf 89999849988089999999707889976799989
Q 001411 234 KTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDG 268 (1082)
Q Consensus 234 ~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~i~g 268 (1082)
+++.|+|++||||||+.+.|+..+. +...+++
T Consensus 3 klI~i~G~~GsGKTTva~~L~~~~~---~~~~~~~ 34 (176)
T d2bdta1 3 KLYIITGPAGVGKSTTCKRLAAQLD---NSAYIEG 34 (176)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSS---SEEEEEH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHCC---CCEEEEH
T ss_conf 0899989999998999999999809---9889830
|
| >d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=92.40 E-value=0.04 Score=29.70 Aligned_cols=29 Identities=17% Similarity=0.240 Sum_probs=23.6
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHCCCCCC
Q ss_conf 98999984998808999999970788997
Q 001411 233 GKTFAFVGPSGSGKSTIISMVQRLYEPTS 261 (1082)
Q Consensus 233 G~~~~ivG~sGsGKSTll~~l~g~~~~~~ 261 (1082)
.++++|.|++||||||+++.|+..+....
T Consensus 1 ~kiI~i~G~~GsGKsT~~~~L~~~l~~~~ 29 (190)
T d1khta_ 1 NKVVVVTGVPGVGSTTSSQLAMDNLRKEG 29 (190)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHTTT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHCC
T ss_conf 98899989999898999999999998769
|
| >d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]
Probab=92.36 E-value=0.056 Score=28.47 Aligned_cols=27 Identities=26% Similarity=0.530 Sum_probs=23.1
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHHCC
Q ss_conf 489899998499880899999997078
Q 001411 231 DAGKTFAFVGPSGSGKSTIISMVQRLY 257 (1082)
Q Consensus 231 ~~G~~~~ivG~sGsGKSTll~~l~g~~ 257 (1082)
++|-.+.|+||.||||||..+.|+-.+
T Consensus 1 p~~~riil~G~pGSGKsT~a~~La~~~ 27 (190)
T d1ak2a1 1 PKGVRAVLLGPPGAGKGTQAPKLAKNF 27 (190)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 996389998999998899999999986
|
| >d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=92.35 E-value=0.04 Score=29.64 Aligned_cols=31 Identities=23% Similarity=0.277 Sum_probs=25.1
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCCCCCE
Q ss_conf 9589998389997788999881326698418
Q 001411 863 GRSLAVVGQSGSGKSTVISLVMRFYDPISGT 893 (1082)
Q Consensus 863 Ge~iaIvG~SGsGKSTL~~lL~gl~~p~~G~ 893 (1082)
.+.|+|.|++||||||+++.|...+......
T Consensus 1 ~kiI~i~G~~GsGKsT~~~~L~~~l~~~~~~ 31 (190)
T d1khta_ 1 NKVVVVTGVPGVGSTTSSQLAMDNLRKEGVN 31 (190)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHTTTCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHCCCC
T ss_conf 9889998999989899999999999876998
|
| >d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase-like domain of Cask species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.34 E-value=0.055 Score=28.48 Aligned_cols=25 Identities=24% Similarity=0.392 Sum_probs=17.8
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHCC
Q ss_conf 9899998499880899999997078
Q 001411 233 GKTFAFVGPSGSGKSTIISMVQRLY 257 (1082)
Q Consensus 233 G~~~~ivG~sGsGKSTll~~l~g~~ 257 (1082)
.+.+.|+||||+||+||++.|....
T Consensus 3 ~k~ivl~Gpsg~GK~tl~~~L~~~~ 27 (178)
T d1kgda_ 3 RKTLVLLGAHGVGRRHIKNTLITKH 27 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHC
T ss_conf 7719999989999999999999709
|
| >d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]
Probab=92.28 E-value=0.041 Score=29.61 Aligned_cols=23 Identities=22% Similarity=0.329 Sum_probs=18.5
Q ss_pred EEEEECCCCCCHHHHHHHHHHCC
Q ss_conf 99998499880899999997078
Q 001411 235 TFAFVGPSGSGKSTIISMVQRLY 257 (1082)
Q Consensus 235 ~~~ivG~sGsGKSTll~~l~g~~ 257 (1082)
.+.|+|++||||||+.+.|+-.+
T Consensus 6 ~I~i~G~pGsGKTTia~~La~~l 28 (173)
T d1rkba_ 6 NILLTGTPGVGKTTLGKELASKS 28 (173)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 79898999999899999999997
|
| >d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase-like domain of Cask species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.23 E-value=0.053 Score=28.65 Aligned_cols=24 Identities=17% Similarity=0.441 Sum_probs=20.9
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 589998389997788999881326
Q 001411 864 RSLAVVGQSGSGKSTVISLVMRFY 887 (1082)
Q Consensus 864 e~iaIvG~SGsGKSTL~~lL~gl~ 887 (1082)
..+.|+||||+||+||.+.|...+
T Consensus 4 k~ivl~Gpsg~GK~tl~~~L~~~~ 27 (178)
T d1kgda_ 4 KTLVLLGAHGVGRRHIKNTLITKH 27 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCEEEECCCCCCHHHHHHHHHHHC
T ss_conf 719999989999999999999709
|
| >d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=92.17 E-value=0.24 Score=23.14 Aligned_cols=89 Identities=17% Similarity=0.178 Sum_probs=51.2
Q ss_pred EECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHHHHCCEEEECCCCCCCCCCHHHHHCCCCCCCC
Q ss_conf 62895899983899977889998813266984189999950799997887333288836676664247888323998879
Q 001411 860 VSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRKIGLVQQEPALFSTTIYENIKYGNEDAS 939 (1082)
Q Consensus 860 I~~Ge~iaIvG~SGsGKSTL~~lL~gl~~p~~G~I~idg~di~~~~~~~lr~~i~~vpQ~~~lf~gTIreNl~~~~~~~~ 939 (1082)
-++-+.+-++|++||||||+++-+... .|.+.++. +.++ +
T Consensus 11 ~~~p~liil~G~pGsGKST~a~~l~~~----~~~~~i~~--------D~~~----------------------------~ 50 (172)
T d1yj5a2 11 SPNPEVVVAVGFPGAGKSTFIQEHLVS----AGYVHVNR--------DTLG----------------------------S 50 (172)
T ss_dssp CSSCCEEEEECCTTSSHHHHHHHHTGG----GTCEEEEH--------HHHC----------------------------S
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHH----CCCEEECH--------HHHH----------------------------H
T ss_conf 999989999899999899999999976----59789760--------7777----------------------------8
Q ss_pred HHHHHHHHHHHCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHH-HHHHHHHCCCCCEEEEE
Q ss_conf 999999999900889996274654442269999899249999-99999970399877851
Q 001411 940 EIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQR-VAIARAILKNPSILLLD 998 (1082)
Q Consensus 940 d~ei~~a~~~a~l~~~I~~lp~gldt~i~e~g~~LSgGQkQr-laLARAll~~p~ILiLD 998 (1082)
...+...++ ..+..|.+..+.. .+++..+|++ +.+|+..=.+..++.+|
T Consensus 51 ~~~~~~~~~--------~~l~~g~~vIiD~--t~~~~~~R~~~~~~a~~~~~~~~~v~l~ 100 (172)
T d1yj5a2 51 WQRCVSSCQ--------AALRQGKRVVIDN--TNPDVPSRARYIQCAKDAGVPCRCFNFC 100 (172)
T ss_dssp HHHHHHHHH--------HHHHTTCCEEEES--CCCSHHHHHHHHHHHHHHTCCEEEEEEC
T ss_pred HHHHHHHHH--------HHHHCCCCCEEEC--CCCCHHHHHHHHHHHHHCCCCEEEEEEC
T ss_conf 889999999--------9997799955517--6799999999999998558887999948
|
| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein BH3686 species: Bacillus halodurans [TaxId: 86665]
Probab=92.10 E-value=0.049 Score=28.97 Aligned_cols=32 Identities=28% Similarity=0.472 Sum_probs=25.2
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECC
Q ss_conf 58999838999778899988132669841899999
Q 001411 864 RSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDG 898 (1082)
Q Consensus 864 e~iaIvG~SGsGKSTL~~lL~gl~~p~~G~I~idg 898 (1082)
..+.|+|++||||||+++.|.+.+. +...++|
T Consensus 3 klI~i~G~~GsGKTTva~~L~~~~~---~~~~~~~ 34 (176)
T d2bdta1 3 KLYIITGPAGVGKSTTCKRLAAQLD---NSAYIEG 34 (176)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSS---SEEEEEH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHCC---CCEEEEH
T ss_conf 0899989999998999999999809---9889830
|
| >d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Escherichia coli [TaxId: 562]
Probab=91.95 E-value=0.048 Score=29.01 Aligned_cols=24 Identities=38% Similarity=0.585 Sum_probs=20.8
Q ss_pred CEEEEECCCCCCHHHHHHHHHHCC
Q ss_conf 899998499880899999997078
Q 001411 234 KTFAFVGPSGSGKSTIISMVQRLY 257 (1082)
Q Consensus 234 ~~~~ivG~sGsGKSTll~~l~g~~ 257 (1082)
+.+.|+|++||||||+.+.|+-.+
T Consensus 3 k~I~l~G~~GsGKSTvak~La~~L 26 (169)
T d1kaga_ 3 RNIFLVGPMGAGKSTIGRQLAQQL 26 (169)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 749998999999999999999996
|
| >d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=91.95 E-value=0.12 Score=25.67 Aligned_cols=25 Identities=28% Similarity=0.454 Sum_probs=21.5
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9589998389997788999881326
Q 001411 863 GRSLAVVGQSGSGKSTVISLVMRFY 887 (1082)
Q Consensus 863 Ge~iaIvG~SGsGKSTL~~lL~gl~ 887 (1082)
+=+|||+|++|+|||||++.|+|-.
T Consensus 8 ~~kV~iiG~~~~GKSTLin~l~~~~ 32 (186)
T d1mkya2 8 AIKVAIVGRPNVGKSTLFNAILNKE 32 (186)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTST
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 8889999999999999999997787
|
| >d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.79 E-value=0.036 Score=30.03 Aligned_cols=27 Identities=30% Similarity=0.438 Sum_probs=24.2
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 895899983899977889998813266
Q 001411 862 AGRSLAVVGQSGSGKSTVISLVMRFYD 888 (1082)
Q Consensus 862 ~Ge~iaIvG~SGsGKSTL~~lL~gl~~ 888 (1082)
+|..|.|+|++||||||+++.|...+.
T Consensus 18 ~g~vI~L~G~pGSGKTTiAk~La~~l~ 44 (195)
T d1x6va3 18 RGCTVWLTGLSGAGKTTVSMALEEYLV 44 (195)
T ss_dssp CCEEEEEESSCHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 996999889999999999999999997
|
| >d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Dictyostelium discoideum [TaxId: 44689]
Probab=91.77 E-value=0.049 Score=28.93 Aligned_cols=32 Identities=28% Similarity=0.392 Sum_probs=24.2
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHCCCCCCCEEEEC
Q ss_conf 898999984998808999999970788997679998
Q 001411 232 AGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLD 267 (1082)
Q Consensus 232 ~G~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~i~ 267 (1082)
+..++.|+||.||||||+.+.|+..+ |-+.++
T Consensus 5 kp~iI~i~G~pGSGKsT~a~~La~~~----g~~~i~ 36 (194)
T d1qf9a_ 5 KPNVVFVLGGPGSGKGTQCANIVRDF----GWVHLS 36 (194)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHH----CCEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH----CCCEEC
T ss_conf 99489998999998899999999997----992672
|
| >d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.75 E-value=0.053 Score=28.68 Aligned_cols=24 Identities=38% Similarity=0.661 Sum_probs=17.8
Q ss_pred EEEEECCCCCCHHHHHHHHHHCCC
Q ss_conf 999984998808999999970788
Q 001411 235 TFAFVGPSGSGKSTIISMVQRLYE 258 (1082)
Q Consensus 235 ~~~ivG~sGsGKSTll~~l~g~~~ 258 (1082)
.+.|+|||||||+||++.|....+
T Consensus 3 pIvl~GpsG~GK~tl~~~L~~~~~ 26 (186)
T d1gkya_ 3 PIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHCT
T ss_pred EEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 699989999998999999997488
|
| >d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein engB species: Pyrococcus horikoshii [TaxId: 53953]
Probab=91.70 E-value=0.06 Score=28.20 Aligned_cols=22 Identities=41% Similarity=0.508 Sum_probs=19.9
Q ss_pred EEEEECCCCCCHHHHHHHHHHC
Q ss_conf 9999849988089999999707
Q 001411 235 TFAFVGPSGSGKSTIISMVQRL 256 (1082)
Q Consensus 235 ~~~ivG~sGsGKSTll~~l~g~ 256 (1082)
.++|+|++|+|||||++.|.|.
T Consensus 2 ~I~lvG~~nvGKSsLin~l~~~ 23 (184)
T d2cxxa1 2 TIIFAGRSNVGKSTLIYRLTGK 23 (184)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 8999999998899999999689
|
| >d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxycytidine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.44 E-value=0.055 Score=28.49 Aligned_cols=27 Identities=30% Similarity=0.480 Sum_probs=23.5
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHCCC
Q ss_conf 898999984998808999999970788
Q 001411 232 AGKTFAFVGPSGSGKSTIISMVQRLYE 258 (1082)
Q Consensus 232 ~G~~~~ivG~sGsGKSTll~~l~g~~~ 258 (1082)
++++++|-|+.||||||++++|...+.
T Consensus 1 ~~k~I~ieG~dGsGKST~~~~L~~~l~ 27 (241)
T d1p5zb_ 1 RIKKISIEGNIAAGKSTFVNILKQLCE 27 (241)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 998899987888779999999999973
|
| >d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Escherichia coli [TaxId: 562]
Probab=91.37 E-value=0.062 Score=28.05 Aligned_cols=24 Identities=29% Similarity=0.457 Sum_probs=21.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 899983899977889998813266
Q 001411 865 SLAVVGQSGSGKSTVISLVMRFYD 888 (1082)
Q Consensus 865 ~iaIvG~SGsGKSTL~~lL~gl~~ 888 (1082)
.|.|+|++||||||+.+.|...+.
T Consensus 4 ~I~l~G~~GsGKSTvak~La~~L~ 27 (169)
T d1kaga_ 4 NIFLVGPMGAGKSTIGRQLAQQLN 27 (169)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 499989999999999999999969
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Probab=91.37 E-value=0.073 Score=27.48 Aligned_cols=23 Identities=17% Similarity=0.368 Sum_probs=16.5
Q ss_pred CEEEEECCCCCCHHHHHHHHHHC
Q ss_conf 89999849988089999999707
Q 001411 234 KTFAFVGPSGSGKSTIISMVQRL 256 (1082)
Q Consensus 234 ~~~~ivG~sGsGKSTll~~l~g~ 256 (1082)
=.++++|++|+|||||++.|.|.
T Consensus 2 ~kI~lvG~~nvGKSsLin~l~~~ 24 (161)
T d2gj8a1 2 MKVVIAGRPNAGKSSLLNALAGR 24 (161)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHHCC
T ss_conf 89999899999899999999688
|
| >d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Bacillus subtilis [TaxId: 1423]
Probab=91.37 E-value=0.049 Score=28.95 Aligned_cols=21 Identities=38% Similarity=0.551 Sum_probs=16.1
Q ss_pred EEEECCCCCCHHHHHHHHHHC
Q ss_conf 999849988089999999707
Q 001411 236 FAFVGPSGSGKSTIISMVQRL 256 (1082)
Q Consensus 236 ~~ivG~sGsGKSTll~~l~g~ 256 (1082)
++|+|++++|||||++.|.|.
T Consensus 4 VaiiG~~nvGKSSLin~L~~~ 24 (185)
T d1lnza2 4 VGLVGFPSVGKSTLLSVVSSA 24 (185)
T ss_dssp EEEESSTTSSHHHHHHHSEEE
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 999899998799999999689
|
| >d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.32 E-value=0.067 Score=27.79 Aligned_cols=43 Identities=26% Similarity=0.546 Sum_probs=28.5
Q ss_pred EEEECCCCCCHHHHHHHHHCCCCC-------------CCCEEEECCCCCCCCCHHHHH
Q ss_conf 999838999778899988132669-------------841899999507999978873
Q 001411 866 LAVVGQSGSGKSTVISLVMRFYDP-------------ISGTVLIDGYDIRTLNLRSLR 910 (1082)
Q Consensus 866 iaIvG~SGsGKSTL~~lL~gl~~p-------------~~G~I~idg~di~~~~~~~lr 910 (1082)
|.|+|||||||+||++.|..-.+- ..|+ .+|+|..-++.+.+.
T Consensus 4 Ivl~GpsG~GK~tl~~~L~~~~~~~~~~~~~~TTR~~r~~E--~~g~dy~fvs~~~f~ 59 (186)
T d1gkya_ 4 IVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGE--VNGKDYNFVSVDEFK 59 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHCTTTEEECCEEECSCCCTTC--CBTTTEEECCHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCCCC--CCCCCCEECCHHHHH
T ss_conf 99989999998999999997488662477764268999997--578432432488999
|
| >d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=91.32 E-value=0.075 Score=27.39 Aligned_cols=23 Identities=30% Similarity=0.406 Sum_probs=20.2
Q ss_pred EEEEECCCCCCHHHHHHHHHHCC
Q ss_conf 99998499880899999997078
Q 001411 235 TFAFVGPSGSGKSTIISMVQRLY 257 (1082)
Q Consensus 235 ~~~ivG~sGsGKSTll~~l~g~~ 257 (1082)
.++++|++|+|||||++.|.|..
T Consensus 2 ~V~liG~~n~GKSsLi~~L~~~~ 24 (171)
T d1mkya1 2 TVLIVGRPNVGKSTLFNKLVKKK 24 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89999999998999999996777
|
| >d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Probab=91.27 E-value=0.077 Score=27.29 Aligned_cols=23 Identities=30% Similarity=0.410 Sum_probs=20.6
Q ss_pred EEEEECCCCCCHHHHHHHHHHCC
Q ss_conf 99998499880899999997078
Q 001411 235 TFAFVGPSGSGKSTIISMVQRLY 257 (1082)
Q Consensus 235 ~~~ivG~sGsGKSTll~~l~g~~ 257 (1082)
+++++|++|+|||||++.+.|.-
T Consensus 7 ~I~lvG~~~~GKSSLin~l~~~~ 29 (178)
T d1wf3a1 7 FVAIVGKPNVGKSTLLNNLLGVK 29 (178)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99999999999999999996888
|
| >d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus, EF-G-2 [TaxId: 274]
Probab=91.19 E-value=0.033 Score=30.40 Aligned_cols=51 Identities=22% Similarity=0.295 Sum_probs=32.1
Q ss_pred EEEEECCCCCCHHHHHHHHHHCC--CCCCCEEEECCEECCCCCHHHHHHHCEEE
Q ss_conf 99998499880899999997078--89976799989507887878884113587
Q 001411 235 TFAFVGPSGSGKSTIISMVQRLY--EPTSGKILLDGHDLKSLQLKWLREQMGLV 286 (1082)
Q Consensus 235 ~~~ivG~sGsGKSTll~~l~g~~--~~~~G~i~i~g~~~~~~~~~~~~~~i~~v 286 (1082)
-++|+|+.|+|||||...|+... ....|++. +|....+..+....+++++-
T Consensus 4 Nv~iiGh~~~GKTtL~e~ll~~~g~~~~~g~v~-~g~~~~D~~~~E~~r~~ti~ 56 (267)
T d2dy1a2 4 TVALVGHAGSGKTTLTEALLYKTGAKERRGRVE-EGTTTTDYTPEAKLHRTTVR 56 (267)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGG-GTCCSSCCSHHHHHTTSCCS
T ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCHHHCCCH-HCCCCCCCHHHHHHHCCEEE
T ss_conf 999994889809999999999709755306622-22113562698887387687
|
| >d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]
Probab=91.16 E-value=0.072 Score=27.51 Aligned_cols=24 Identities=21% Similarity=0.295 Sum_probs=21.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 899983899977889998813266
Q 001411 865 SLAVVGQSGSGKSTVISLVMRFYD 888 (1082)
Q Consensus 865 ~iaIvG~SGsGKSTL~~lL~gl~~ 888 (1082)
++.|+|++||||||+++.|..-+.
T Consensus 6 ~I~i~G~pGsGKTTia~~La~~l~ 29 (173)
T d1rkba_ 6 NILLTGTPGVGKTTLGKELASKSG 29 (173)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 798989999998999999999979
|
| >d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Thermus thermophilus [TaxId: 274]
Probab=91.11 E-value=0.073 Score=27.47 Aligned_cols=21 Identities=33% Similarity=0.610 Sum_probs=18.6
Q ss_pred EEEEECCCCCCHHHHHHHHHH
Q ss_conf 999984998808999999970
Q 001411 235 TFAFVGPSGSGKSTIISMVQR 255 (1082)
Q Consensus 235 ~~~ivG~sGsGKSTll~~l~g 255 (1082)
++||+|++||||||+++.|.-
T Consensus 5 IIgitG~~gSGKstva~~l~~ 25 (191)
T d1uf9a_ 5 IIGITGNIGSGKSTVAALLRS 25 (191)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999989887789999999998
|
| >d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: ATP(GTP)-binding protein PAB0955 species: Pyrococcus abyssi [TaxId: 29292]
Probab=91.10 E-value=0.1 Score=26.21 Aligned_cols=24 Identities=42% Similarity=0.672 Sum_probs=20.8
Q ss_pred EEEEECCCCCCHHHHHHHHHHCCC
Q ss_conf 999984998808999999970788
Q 001411 235 TFAFVGPSGSGKSTIISMVQRLYE 258 (1082)
Q Consensus 235 ~~~ivG~sGsGKSTll~~l~g~~~ 258 (1082)
+++|+|+.|||||||++.|.....
T Consensus 2 vi~v~G~~GsGKTTLl~~ll~~~~ 25 (244)
T d1yrba1 2 IVVFVGTAGSGKTTLTGEFGRYLE 25 (244)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 899991899839999999999884
|
| >d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=91.01 E-value=0.082 Score=27.06 Aligned_cols=24 Identities=33% Similarity=0.621 Sum_probs=21.1
Q ss_pred EEEEECCCCCCHHHHHHHHHHCCC
Q ss_conf 999984998808999999970788
Q 001411 235 TFAFVGPSGSGKSTIISMVQRLYE 258 (1082)
Q Consensus 235 ~~~ivG~sGsGKSTll~~l~g~~~ 258 (1082)
+++|-||+||||||..+.|+..+.
T Consensus 5 ~IaIdGp~GsGKgT~ak~La~~lg 28 (223)
T d1q3ta_ 5 QIAIDGPASSGKSTVAKIIAKDFG 28 (223)
T ss_dssp EEEEECSSCSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 999789998798999999999969
|
| >d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.99 E-value=0.31 Score=22.22 Aligned_cols=44 Identities=25% Similarity=0.383 Sum_probs=28.8
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCC
Q ss_conf 997657717545889897999999999770997399980494300
Q 001411 361 NPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTV 405 (1082)
Q Consensus 361 ~~~illlDEpts~lD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~ 405 (1082)
+..++++||.- .+.......+.+.+........++++++....+
T Consensus 99 ~~kiiiiDe~d-~~~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~i 142 (227)
T d1sxjc2 99 GFKLIILDEAD-AMTNAAQNALRRVIERYTKNTRFCVLANYAHKL 142 (227)
T ss_dssp SCEEEEETTGG-GSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGS
T ss_pred CEEEEEEECCC-CCHHHHHHHHHHHHHHCCCCEEECCCCCCHHHH
T ss_conf 71899996632-000237899998863112002320126708775
|
| >d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Uridylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.99 E-value=0.053 Score=28.66 Aligned_cols=32 Identities=22% Similarity=0.297 Sum_probs=23.3
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHCCCCCCCEEEEC
Q ss_conf 898999984998808999999970788997679998
Q 001411 232 AGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLD 267 (1082)
Q Consensus 232 ~G~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~i~ 267 (1082)
+-.++.|+||.||||||+.+.|+..+ |-..++
T Consensus 7 ~~~iI~i~GppGSGKsT~a~~La~~~----g~~~is 38 (196)
T d1ukza_ 7 QVSVIFVLGGPGAGKGTQCEKLVKDY----SFVHLS 38 (196)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHHS----SCEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH----CCEEEE
T ss_conf 97289998999999899999999985----990885
|
| >d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=90.97 E-value=0.059 Score=28.25 Aligned_cols=22 Identities=36% Similarity=0.604 Sum_probs=17.9
Q ss_pred EEEECCCCCCHHHHHHHHHHCC
Q ss_conf 9998499880899999997078
Q 001411 236 FAFVGPSGSGKSTIISMVQRLY 257 (1082)
Q Consensus 236 ~~ivG~sGsGKSTll~~l~g~~ 257 (1082)
++|+|||||||+||++.|....
T Consensus 3 Ivl~GPsGsGK~tl~~~L~~~~ 24 (190)
T d1lvga_ 3 VVLSGPSGAGKSTLLKKLFQEH 24 (190)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHC
T ss_conf 9999999999999999999748
|
| >d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: ATP(GTP)-binding protein PAB0955 species: Pyrococcus abyssi [TaxId: 29292]
Probab=90.97 E-value=0.1 Score=26.25 Aligned_cols=24 Identities=33% Similarity=0.581 Sum_probs=20.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 899983899977889998813266
Q 001411 865 SLAVVGQSGSGKSTVISLVMRFYD 888 (1082)
Q Consensus 865 ~iaIvG~SGsGKSTL~~lL~gl~~ 888 (1082)
.++++|+.|||||||++.|.+...
T Consensus 2 vi~v~G~~GsGKTTLl~~ll~~~~ 25 (244)
T d1yrba1 2 IVVFVGTAGSGKTTLTGEFGRYLE 25 (244)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 899991899839999999999884
|
| >d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Dictyostelium discoideum [TaxId: 44689]
Probab=90.96 E-value=0.081 Score=27.08 Aligned_cols=32 Identities=31% Similarity=0.448 Sum_probs=25.9
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEC
Q ss_conf 895899983899977889998813266984189999
Q 001411 862 AGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLID 897 (1082)
Q Consensus 862 ~Ge~iaIvG~SGsGKSTL~~lL~gl~~p~~G~I~id 897 (1082)
+...|.|+||.||||||+++.|+.-| |-+.++
T Consensus 5 kp~iI~i~G~pGSGKsT~a~~La~~~----g~~~i~ 36 (194)
T d1qf9a_ 5 KPNVVFVLGGPGSGKGTQCANIVRDF----GWVHLS 36 (194)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHH----CCEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH----CCCEEC
T ss_conf 99489998999998899999999997----992672
|
| >d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cell division protein MukB species: Escherichia coli [TaxId: 562]
Probab=90.94 E-value=0.0042 Score=37.94 Aligned_cols=35 Identities=26% Similarity=0.329 Sum_probs=29.4
Q ss_pred CCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHHCC
Q ss_conf 410103887489899998499880899999997078
Q 001411 222 VFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLY 257 (1082)
Q Consensus 222 ~l~~is~~i~~G~~~~ivG~sGsGKSTll~~l~g~~ 257 (1082)
.+++.++++.+| ++.|+|+|||||||++.+|.-.+
T Consensus 14 ~~~~~~i~f~~~-~tvi~G~NGsGKStil~Ai~~~L 48 (222)
T d1qhla_ 14 GFFARTFDLDEL-VTTLSGGNGAGKSTTMAAFVTAL 48 (222)
T ss_dssp TEEEEEECHHHH-HHHHHSCCSHHHHHHHHHHHHHH
T ss_pred CEEEEEEECCCC-EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 870279974998-08998899998799999999996
|
| >d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=90.80 E-value=0.088 Score=26.77 Aligned_cols=22 Identities=32% Similarity=0.430 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHHHHC
Q ss_conf 9999849988089999999707
Q 001411 235 TFAFVGPSGSGKSTIISMVQRL 256 (1082)
Q Consensus 235 ~~~ivG~sGsGKSTll~~l~g~ 256 (1082)
+++++|.+|+|||||++.|.|.
T Consensus 7 ~I~iiG~~nvGKSSLin~L~~~ 28 (179)
T d1egaa1 7 FIAIVGRPNVGKSTLLNKLLGQ 28 (179)
T ss_dssp EEEEECSSSSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999979999899999999589
|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Thermus thermophilus [TaxId: 274]
Probab=90.70 E-value=0.053 Score=28.63 Aligned_cols=21 Identities=29% Similarity=0.572 Sum_probs=17.7
Q ss_pred EEEECCCCCCHHHHHHHHHHC
Q ss_conf 999849988089999999707
Q 001411 236 FAFVGPSGSGKSTIISMVQRL 256 (1082)
Q Consensus 236 ~~ivG~sGsGKSTll~~l~g~ 256 (1082)
++|+|.+++|||||++.|.|.
T Consensus 4 VaivG~~nvGKSTLin~L~~~ 24 (180)
T d1udxa2 4 VGLVGYPNAGKSSLLAAMTRA 24 (180)
T ss_dssp EEEECCGGGCHHHHHHHHCSS
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 999899999899999999689
|
| >d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.69 E-value=0.14 Score=25.13 Aligned_cols=29 Identities=17% Similarity=0.316 Sum_probs=25.2
Q ss_pred EEECCCEEEEECCCCCCHHHHHHHHHHCC
Q ss_conf 87489899998499880899999997078
Q 001411 229 SVDAGKTFAFVGPSGSGKSTIISMVQRLY 257 (1082)
Q Consensus 229 ~i~~G~~~~ivG~sGsGKSTll~~l~g~~ 257 (1082)
-+++|+++.|.||+|||||||+.-++...
T Consensus 19 Gi~~G~v~~i~G~~GsGKT~l~l~la~~~ 47 (242)
T d1n0wa_ 19 GIETGSITEMFGEFRTGKTQICHTLAVTC 47 (242)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCCCCEEEEEEECCCCCHHHHHHHHHHHH
T ss_conf 98599799999589999999999999999
|
| >d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Bacillus subtilis [TaxId: 1423]
Probab=90.68 E-value=0.084 Score=26.96 Aligned_cols=23 Identities=30% Similarity=0.475 Sum_probs=21.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 89998389997788999881326
Q 001411 865 SLAVVGQSGSGKSTVISLVMRFY 887 (1082)
Q Consensus 865 ~iaIvG~SGsGKSTL~~lL~gl~ 887 (1082)
+|+|+|++|+|||||++.|+|.-
T Consensus 25 ~I~lvG~~n~GKSTLin~L~g~~ 47 (195)
T d1svia_ 25 EIALAGRSNVGKSSFINSLINRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTC-
T ss_pred EEEEECCCCCCHHHHHHHHCCCC
T ss_conf 99998999987999999852987
|
| >d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyribonucleoside kinase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=90.64 E-value=0.092 Score=26.65 Aligned_cols=24 Identities=29% Similarity=0.387 Sum_probs=20.1
Q ss_pred CEEEEECCCCCCHHHHHHHHHHCC
Q ss_conf 899998499880899999997078
Q 001411 234 KTFAFVGPSGSGKSTIISMVQRLY 257 (1082)
Q Consensus 234 ~~~~ivG~sGsGKSTll~~l~g~~ 257 (1082)
-+++|-|+.||||||+++.|...+
T Consensus 10 ~~I~ieG~~GsGKTTl~~~L~~~l 33 (197)
T d2vp4a1 10 FTVLIEGNIGSGKTTYLNHFEKYK 33 (197)
T ss_dssp EEEEEECSTTSCHHHHHHTTGGGT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 199988999988899999999870
|
| >d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]
Probab=90.63 E-value=0.12 Score=25.76 Aligned_cols=33 Identities=18% Similarity=0.350 Sum_probs=27.2
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEC
Q ss_conf 2895899983899977889998813266984189999
Q 001411 861 SAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLID 897 (1082)
Q Consensus 861 ~~Ge~iaIvG~SGsGKSTL~~lL~gl~~p~~G~I~id 897 (1082)
++|-++.|+||.||||||+.+.|..-| |-..++
T Consensus 1 p~~~riil~G~pGSGKsT~a~~La~~~----g~~~i~ 33 (190)
T d1ak2a1 1 PKGVRAVLLGPPGAGKGTQAPKLAKNF----CVCHLA 33 (190)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHH----TCEEEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHH----CCEEEE
T ss_conf 996389998999998899999999986----985775
|
| >d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.51 E-value=0.11 Score=26.00 Aligned_cols=29 Identities=21% Similarity=0.193 Sum_probs=24.5
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHHCCCC
Q ss_conf 48989999849988089999999707889
Q 001411 231 DAGKTFAFVGPSGSGKSTIISMVQRLYEP 259 (1082)
Q Consensus 231 ~~G~~~~ivG~sGsGKSTll~~l~g~~~~ 259 (1082)
++|.+++|-|+-||||||+.+.|...+..
T Consensus 1 ~rG~lI~ieG~dGsGKsT~~~~L~~~L~~ 29 (209)
T d1nn5a_ 1 RRGALIVLEGVDRAGKSTQSRKLVEALCA 29 (209)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 98059999899888999999999999987
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=90.48 E-value=0.079 Score=27.21 Aligned_cols=25 Identities=24% Similarity=0.478 Sum_probs=21.0
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHCC
Q ss_conf 9899998499880899999997078
Q 001411 233 GKTFAFVGPSGSGKSTIISMVQRLY 257 (1082)
Q Consensus 233 G~~~~ivG~sGsGKSTll~~l~g~~ 257 (1082)
.-.++++|++|+|||||++.+.+-.
T Consensus 13 ~~kI~lvG~~~vGKTsLl~~l~~~~ 37 (186)
T d1f6ba_ 13 TGKLVFLGLDNAGKTTLLHMLKDDR 37 (186)
T ss_dssp CEEEEEEEETTSSHHHHHHHHSCC-
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 7789999999989899999996788
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.48 E-value=0.091 Score=26.67 Aligned_cols=23 Identities=22% Similarity=0.554 Sum_probs=20.8
Q ss_pred EEEEECCCCCCHHHHHHHHHHCC
Q ss_conf 99998499880899999997078
Q 001411 235 TFAFVGPSGSGKSTIISMVQRLY 257 (1082)
Q Consensus 235 ~~~ivG~sGsGKSTll~~l~g~~ 257 (1082)
.++|+|++|+|||||++.|.+.-
T Consensus 5 ~V~lvG~~n~GKTSLln~l~~~~ 27 (209)
T d1nrjb_ 5 SIIIAGPQNSGKTSLLTLLTTDS 27 (209)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99999999988999999996799
|
| >d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Mycoplasma pneumoniae [TaxId: 2104]
Probab=90.39 E-value=0.18 Score=24.09 Aligned_cols=32 Identities=25% Similarity=0.258 Sum_probs=23.1
Q ss_pred CCCCEEEEEECCCEEEEECCCCCCHHHHHHHHH
Q ss_conf 410103887489899998499880899999997
Q 001411 222 VFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQ 254 (1082)
Q Consensus 222 ~l~~is~~i~~G~~~~ivG~sGsGKSTll~~l~ 254 (1082)
.++..-+.+ .|.-+.|.|+||+||||+...+.
T Consensus 5 ~~H~~~v~~-~g~gvli~G~sG~GKS~lal~l~ 36 (177)
T d1knxa2 5 QIHGVLLEV-FGVGVLLTGRSGIGKSECALDLI 36 (177)
T ss_dssp EEEEEEEEE-TTEEEEEEESSSSSHHHHHHHHH
T ss_pred EEEEEEEEE-CCEEEEEECCCCCCHHHHHHHHH
T ss_conf 178999999-99999998189999899999999
|
| >d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Haemophilus influenzae [TaxId: 727]
Probab=90.37 E-value=0.099 Score=26.37 Aligned_cols=20 Identities=35% Similarity=0.581 Sum_probs=18.5
Q ss_pred EEEEECCCCCCHHHHHHHHH
Q ss_conf 99998499880899999997
Q 001411 235 TFAFVGPSGSGKSTIISMVQ 254 (1082)
Q Consensus 235 ~~~ivG~sGsGKSTll~~l~ 254 (1082)
++||+|+.||||||+++.+.
T Consensus 4 iIgITG~igSGKStv~~~l~ 23 (205)
T d1jjva_ 4 IVGLTGGIGSGKTTIANLFT 23 (205)
T ss_dssp EEEEECSTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
T ss_conf 99988888788999999999
|
| >d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=90.24 E-value=0.097 Score=26.43 Aligned_cols=24 Identities=25% Similarity=0.383 Sum_probs=21.3
Q ss_pred EEEEECCCCCCHHHHHHHHHHCCC
Q ss_conf 999984998808999999970788
Q 001411 235 TFAFVGPSGSGKSTIISMVQRLYE 258 (1082)
Q Consensus 235 ~~~ivG~sGsGKSTll~~l~g~~~ 258 (1082)
+++++|.+||||||+.+.|+..+.
T Consensus 4 li~l~GlpgsGKSTla~~L~~~l~ 27 (213)
T d1bifa1 4 LIVMVGLPARGKTYISKKLTRYLN 27 (213)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 999989999999999999999997
|
| >d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-inducible GTPase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=90.12 E-value=0.14 Score=25.02 Aligned_cols=41 Identities=7% Similarity=0.265 Sum_probs=21.0
Q ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCC
Q ss_conf 569976577175458898979999999997709973999804943
Q 001411 359 LRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLS 403 (1082)
Q Consensus 359 ~~~~~illlDEpts~lD~~~~~~i~~~l~~~~~~~tvi~vtH~~~ 403 (1082)
..+.+++++|-. ... .+.+..+.+.+.+. ++.+++|-...+
T Consensus 133 ~~~~d~~l~~~~-~~~-~~~d~~l~~~l~~~--~k~~~~V~nK~D 173 (400)
T d1tq4a_ 133 FYEYDFFIIISA-TRF-KKNDIDIAKAISMM--KKEFYFVRTKVD 173 (400)
T ss_dssp GGGCSEEEEEES-SCC-CHHHHHHHHHHHHT--TCEEEEEECCHH
T ss_pred HHCCEEEEEECC-CCC-CHHHHHHHHHHHHC--CCCEEEEEECCC
T ss_conf 322659999658-888-78899999999976--998799970863
|
| >d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Extracellular secretion NTPase EpsE species: Vibrio cholerae [TaxId: 666]
Probab=90.03 E-value=0.12 Score=25.67 Aligned_cols=33 Identities=24% Similarity=0.299 Sum_probs=25.8
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCE
Q ss_conf 289589998389997788999881326698418
Q 001411 861 SAGRSLAVVGQSGSGKSTVISLVMRFYDPISGT 893 (1082)
Q Consensus 861 ~~Ge~iaIvG~SGsGKSTL~~lL~gl~~p~~G~ 893 (1082)
.++-.+-+.||+||||||.+..+....+....+
T Consensus 156 ~~~GliLvtGpTGSGKSTTl~~~l~~~~~~~~~ 188 (401)
T d1p9ra_ 156 RPHGIILVTGPTGSGKSTTLYAGLQELNSSERN 188 (401)
T ss_dssp SSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSC
T ss_pred HHHCEEEEECCCCCCCCHHHHHHHHHHCCCCCE
T ss_conf 410548987678777447799986662578746
|
| >d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=90.00 E-value=0.08 Score=27.14 Aligned_cols=22 Identities=32% Similarity=0.530 Sum_probs=19.4
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9998389997788999881326
Q 001411 866 LAVVGQSGSGKSTVISLVMRFY 887 (1082)
Q Consensus 866 iaIvG~SGsGKSTL~~lL~gl~ 887 (1082)
|.|+|||||||+||++.|...+
T Consensus 3 Ivl~GPsGsGK~tl~~~L~~~~ 24 (190)
T d1lvga_ 3 VVLSGPSGAGKSTLLKKLFQEH 24 (190)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHC
T ss_conf 9999999999999999999748
|
| >d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Escherichia coli [TaxId: 562]
Probab=89.97 E-value=0.064 Score=27.95 Aligned_cols=20 Identities=35% Similarity=0.615 Sum_probs=10.1
Q ss_pred EEEECCCCCCHHHHHHHHHH
Q ss_conf 99984998808999999970
Q 001411 236 FAFVGPSGSGKSTIISMVQR 255 (1082)
Q Consensus 236 ~~ivG~sGsGKSTll~~l~g 255 (1082)
++|+|++++|||||++.|.+
T Consensus 19 I~lvG~~NvGKSSL~n~L~~ 38 (188)
T d1puia_ 19 VAFAGRSNAGKSSALNTLTN 38 (188)
T ss_dssp EEEEECTTSSHHHHHTTTCC
T ss_pred EEEECCCCCCHHHHHHHHHC
T ss_conf 99988999989999999858
|
| >d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=89.96 E-value=0.084 Score=26.95 Aligned_cols=34 Identities=32% Similarity=0.443 Sum_probs=26.6
Q ss_pred EECCCEEEEECCCCCCHHHHHHHHHHCCCCCCCEEEEC
Q ss_conf 74898999984998808999999970788997679998
Q 001411 230 VDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLD 267 (1082)
Q Consensus 230 i~~G~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~i~ 267 (1082)
+.++.++.|+||.||||||+.+.|+..+ |-..++
T Consensus 5 ~~~~~iI~l~G~pGSGKsT~a~~La~~~----g~~~is 38 (194)
T d3adka_ 5 LKKSKIIFVVGGPGSGKGTQCEKIVQKY----GYTHLS 38 (194)
T ss_dssp HHTSCEEEEEECTTSSHHHHHHHHHHHT----CCEEEE
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHH----CCEEEE
T ss_conf 4678289998999998799999999986----984683
|
| >d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Campylobacter jejuni [TaxId: 197]
Probab=89.95 E-value=0.097 Score=26.44 Aligned_cols=23 Identities=35% Similarity=0.548 Sum_probs=19.9
Q ss_pred EEEEECCCCCCHHHHHHHHHHCC
Q ss_conf 99998499880899999997078
Q 001411 235 TFAFVGPSGSGKSTIISMVQRLY 257 (1082)
Q Consensus 235 ~~~ivG~sGsGKSTll~~l~g~~ 257 (1082)
.+.|+|++||||||+.+.|+..+
T Consensus 2 ~I~liG~~GsGKsTi~k~La~~l 24 (161)
T d1viaa_ 2 NIVFIGFMGSGKSTLARALAKDL 24 (161)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
T ss_conf 39998999998899999999983
|
| >d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Erwinia chrysanthemi [TaxId: 556]
Probab=89.70 E-value=0.11 Score=26.13 Aligned_cols=24 Identities=25% Similarity=0.405 Sum_probs=19.4
Q ss_pred CEEEEECCCCCCHHHHHHHHHHCC
Q ss_conf 899998499880899999997078
Q 001411 234 KTFAFVGPSGSGKSTIISMVQRLY 257 (1082)
Q Consensus 234 ~~~~ivG~sGsGKSTll~~l~g~~ 257 (1082)
+.+.++|++||||||+.+.|+..+
T Consensus 3 ~~Iil~G~~GsGKSTia~~LA~~L 26 (170)
T d1e6ca_ 3 EPIFMVGARGCGMTTVGRELARAL 26 (170)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCEEEECCCCCCHHHHHHHHHHHH
T ss_conf 988998899998899999999994
|
| >d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxycytidine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.70 E-value=0.073 Score=27.47 Aligned_cols=27 Identities=19% Similarity=0.463 Sum_probs=24.5
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 895899983899977889998813266
Q 001411 862 AGRSLAVVGQSGSGKSTVISLVMRFYD 888 (1082)
Q Consensus 862 ~Ge~iaIvG~SGsGKSTL~~lL~gl~~ 888 (1082)
++..|+|-|+.||||||++++|...+.
T Consensus 1 ~~k~I~ieG~dGsGKST~~~~L~~~l~ 27 (241)
T d1p5zb_ 1 RIKKISIEGNIAAGKSTFVNILKQLCE 27 (241)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 998899987888779999999999973
|
| >d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL1 [TaxId: 9606]
Probab=89.69 E-value=0.12 Score=25.80 Aligned_cols=22 Identities=32% Similarity=0.456 Sum_probs=17.7
Q ss_pred EEEEECCCCCCHHHHHHHHHHC
Q ss_conf 9999849988089999999707
Q 001411 235 TFAFVGPSGSGKSTIISMVQRL 256 (1082)
Q Consensus 235 ~~~ivG~sGsGKSTll~~l~g~ 256 (1082)
.++++|.+|+|||||++.+.+-
T Consensus 7 kI~ivG~~~vGKSSLi~~~~~~ 28 (169)
T d1upta_ 7 RILILGLDGAGKTTILYRLQVG 28 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999999998999999999679
|
| >d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Uridylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=89.65 E-value=0.07 Score=27.62 Aligned_cols=117 Identities=19% Similarity=0.222 Sum_probs=59.6
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHHHHCCEEEECCCCCCCCCCHHHHHCCCCCCCCHH
Q ss_conf 89589998389997788999881326698418999995079999788733328883667666424788832399887999
Q 001411 862 AGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRKIGLVQQEPALFSTTIYENIKYGNEDASEI 941 (1082)
Q Consensus 862 ~Ge~iaIvG~SGsGKSTL~~lL~gl~~p~~G~I~idg~di~~~~~~~lr~~i~~vpQ~~~lf~gTIreNl~~~~~~~~d~ 941 (1082)
+-..+.|+||.||||||+++.|+.-| |-+.|+.- +-+|+.+ .+...-....+++-..-+. ...+.
T Consensus 7 ~~~iI~i~GppGSGKsT~a~~La~~~----g~~~is~g-------dl~R~~~---~~~~~~~~~~i~~~~~~~~-~~~~~ 71 (196)
T d1ukza_ 7 QVSVIFVLGGPGAGKGTQCEKLVKDY----SFVHLSAG-------DLLRAEQ---GRAGSQYGELIKNCIKEGQ-IVPQE 71 (196)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHHS----SCEEEEHH-------HHHHHHH---HSTTCSCHHHHHHHHHTTC-CCCHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH----CCEEEEHH-------HHHHHHH---HHCCCHHHHHHHHHHHCCC-CCCCH
T ss_conf 97289998999999899999999985----99088535-------8999886---2010178899887640000-23203
Q ss_pred HHHHHHHHHCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECC
Q ss_conf 99999999008899962746544422699998992499999999997039987785177
Q 001411 942 ELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEA 1000 (1082)
Q Consensus 942 ei~~a~~~a~l~~~I~~lp~gldt~i~e~g~~LSgGQkQrlaLARAll~~p~ILiLDEp 1000 (1082)
.........-...... .-+..+-+ ..-....|...+.+.+.....++.||=|
T Consensus 72 ~~~~~~~~~~~~~~~~----~~~~~vl~---g~p~~~~q~~~~~~~~~~~~~~i~l~~~ 123 (196)
T d1ukza_ 72 ITLALLRNAISDNVKA----NKHKFLID---GFPRKMDQAISFERDIVESKFILFFDCP 123 (196)
T ss_dssp HHHHHHHHHHHHHHHT----TCCEEEEE---TCCCSHHHHHHHHHHTCCCSEEEEEECC
T ss_pred HHHHHHHHHHHHHHCC----CCCCEEEE---CCCHHHHHHHHHHHHCCCCCEEECCCCC
T ss_conf 6789999998864003----77753540---4313689999999861545543125798
|
| >d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.55 E-value=0.18 Score=24.25 Aligned_cols=29 Identities=14% Similarity=0.255 Sum_probs=25.2
Q ss_pred EEECCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 76289589998389997788999881326
Q 001411 859 KVSAGRSLAVVGQSGSGKSTVISLVMRFY 887 (1082)
Q Consensus 859 ~I~~Ge~iaIvG~SGsGKSTL~~lL~gl~ 887 (1082)
-+++|+.+-|.|++||||||++.-++.-.
T Consensus 19 Gi~~G~v~~i~G~~GsGKT~l~l~la~~~ 47 (242)
T d1n0wa_ 19 GIETGSITEMFGEFRTGKTQICHTLAVTC 47 (242)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCCCCEEEEEEECCCCCHHHHHHHHHHHH
T ss_conf 98599799999589999999999999999
|
| >d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit species: Streptococcus pyogenes [TaxId: 1314]
Probab=89.50 E-value=0.13 Score=25.44 Aligned_cols=34 Identities=26% Similarity=0.438 Sum_probs=26.7
Q ss_pred CEEEEECCCCCCHHHHHHHHHHCCCCCCCEEEECCE
Q ss_conf 899998499880899999997078899767999895
Q 001411 234 KTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGH 269 (1082)
Q Consensus 234 ~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~i~g~ 269 (1082)
..+.+.||.||||||+.+.|++.+.. +-+.+++-
T Consensus 33 ~~ilL~GpPGtGKT~la~~la~~~~~--~~~~i~~d 66 (273)
T d1gvnb_ 33 TAFLLGGQPGSGKTSLRSAIFEETQG--NVIVIDND 66 (273)
T ss_dssp EEEEEECCTTSCTHHHHHHHHHHTTT--CCEEECTH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHC--CEEEEECH
T ss_conf 79998897998899999999998651--54898328
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=89.50 E-value=0.12 Score=25.60 Aligned_cols=23 Identities=26% Similarity=0.541 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHHHCC
Q ss_conf 99998499880899999997078
Q 001411 235 TFAFVGPSGSGKSTIISMVQRLY 257 (1082)
Q Consensus 235 ~~~ivG~sGsGKSTll~~l~g~~ 257 (1082)
+++++|++|+|||||++.+.+-.
T Consensus 2 KI~liG~~nvGKSSLln~l~~~~ 24 (166)
T d2qtvb1 2 KLLFLGLDNAGKTTLLHMLKNDR 24 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89999999999999999995899
|
| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermus aquaticus [TaxId: 271]
Probab=89.49 E-value=0.23 Score=23.26 Aligned_cols=27 Identities=37% Similarity=0.673 Sum_probs=19.7
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHCCC
Q ss_conf 898999984998808999999970788
Q 001411 232 AGKTFAFVGPSGSGKSTIISMVQRLYE 258 (1082)
Q Consensus 232 ~G~~~~ivG~sGsGKSTll~~l~g~~~ 258 (1082)
++.+++++||+|+||||.+-=|+..+.
T Consensus 5 ~~~vi~lvGptGvGKTTTiaKLA~~~~ 31 (207)
T d1okkd2 5 KGRVVLVVGVNGVGKTTTIAKLGRYYQ 31 (207)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 977999989999988999999999999
|
| >d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Maize (Zea mays) [TaxId: 4577]
Probab=89.39 E-value=0.11 Score=26.09 Aligned_cols=23 Identities=26% Similarity=0.469 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHHHCC
Q ss_conf 99998499880899999997078
Q 001411 235 TFAFVGPSGSGKSTIISMVQRLY 257 (1082)
Q Consensus 235 ~~~ivG~sGsGKSTll~~l~g~~ 257 (1082)
.+.|.||.||||||+.+.|+-.+
T Consensus 5 ~I~i~GppGsGKsT~a~~La~~~ 27 (189)
T d1zaka1 5 KVMISGAPASGKGTQCELIKTKY 27 (189)
T ss_dssp CEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99998899999899999999987
|
| >d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=89.36 E-value=0.078 Score=27.23 Aligned_cols=117 Identities=20% Similarity=0.239 Sum_probs=64.7
Q ss_pred EECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHHHHCCEEEECCCCCCCCCCHHHHHCCCCCCCC
Q ss_conf 62895899983899977889998813266984189999950799997887333288836676664247888323998879
Q 001411 860 VSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRKIGLVQQEPALFSTTIYENIKYGNEDAS 939 (1082)
Q Consensus 860 I~~Ge~iaIvG~SGsGKSTL~~lL~gl~~p~~G~I~idg~di~~~~~~~lr~~i~~vpQ~~~lf~gTIreNl~~~~~~~~ 939 (1082)
++++..+.|.||.||||||+++.|..-| |-..|+.-+ -+|+.+ ...+ .....+.+.+.-+ ...+
T Consensus 5 ~~~~~iI~l~G~pGSGKsT~a~~La~~~----g~~~is~g~-------llr~~~---~~~~-~~~~~~~~~~~~~-~~~~ 68 (194)
T d3adka_ 5 LKKSKIIFVVGGPGSGKGTQCEKIVQKY----GYTHLSTGD-------LLRAEV---SSGS-ARGKMLSEIMEKG-QLVP 68 (194)
T ss_dssp HHTSCEEEEEECTTSSHHHHHHHHHHHT----CCEEEEHHH-------HHHHHH---HHTC-HHHHHHHHHHTTT-CCCC
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHH----CCEEEECCH-------HHHHHH---HHHH-HHHHHHHHHHHHC-CCCC
T ss_conf 4678289998999998799999999986----984683347-------899999---8767-6514567777631-3776
Q ss_pred HHHHHHHHHHHCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECC
Q ss_conf 9999999999008899962746544422699998992499999999997039987785177
Q 001411 940 EIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEA 1000 (1082)
Q Consensus 940 d~ei~~a~~~a~l~~~I~~lp~gldt~i~e~g~~LSgGQkQrlaLARAll~~p~ILiLDEp 1000 (1082)
++.+...+... +...+...+..+-+ .+..-..|--.+.+.+.....+..++.+
T Consensus 69 ~~~~~~~~~~~-----l~~~~~~~~g~ild---g~pr~~~qa~~~~~~~~~~~~~~~~~~~ 121 (194)
T d3adka_ 69 LETVLDMLRDA-----MVAKVDTSKGFLID---GYPREVKQGEEFERKIGQPTLLLYVDAG 121 (194)
T ss_dssp HHHHHHHHHHH-----HHTTTTTCSCEEEE---SCCSSHHHHHHHHHHTCCCSEEEEEECC
T ss_pred HHEEEEEHHHH-----HHHCCCCCCCCEEE---ECCCHHHHHHHHHHHHCCCCCHHCCCCC
T ss_conf 22244102456-----64032235660243---1110157899999983775200003331
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Probab=89.35 E-value=0.13 Score=25.46 Aligned_cols=23 Identities=26% Similarity=0.325 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHHHCC
Q ss_conf 99998499880899999997078
Q 001411 235 TFAFVGPSGSGKSTIISMVQRLY 257 (1082)
Q Consensus 235 ~~~ivG~sGsGKSTll~~l~g~~ 257 (1082)
.+.++|++|+|||||++-+.+.-
T Consensus 2 kivlvG~~~vGKSsLi~~l~~~~ 24 (160)
T d1r8sa_ 2 RILMVGLDAAGKTTILYKLKLGE 24 (160)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89999999989899999996598
|
| >d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Chloroplast protein translocon GTPase Toc34 species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=89.31 E-value=0.14 Score=25.12 Aligned_cols=23 Identities=26% Similarity=0.530 Sum_probs=21.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 89998389997788999881326
Q 001411 865 SLAVVGQSGSGKSTVISLVMRFY 887 (1082)
Q Consensus 865 ~iaIvG~SGsGKSTL~~lL~gl~ 887 (1082)
+++|+|++|+||||+++.|+|-.
T Consensus 34 ~I~LvG~tg~GKSSliN~ilg~~ 56 (257)
T d1h65a_ 34 TILVMGKGGVGKSSTVNSIIGER 56 (257)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89998999986999999985898
|
| >d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein Ygr205W species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=89.28 E-value=0.099 Score=26.36 Aligned_cols=23 Identities=35% Similarity=0.437 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHHHCC
Q ss_conf 99998499880899999997078
Q 001411 235 TFAFVGPSGSGKSTIISMVQRLY 257 (1082)
Q Consensus 235 ~~~ivG~sGsGKSTll~~l~g~~ 257 (1082)
+++|.|+.|||||||...|.-.+
T Consensus 29 iIGi~G~qGSGKSTl~~~l~~~L 51 (286)
T d1odfa_ 29 FIFFSGPQGSGKSFTSIQIYNHL 51 (286)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99837998788999999999999
|
| >d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Thermus thermophilus [TaxId: 274]
Probab=89.26 E-value=0.13 Score=25.30 Aligned_cols=22 Identities=41% Similarity=0.676 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 8999838999778899988132
Q 001411 865 SLAVVGQSGSGKSTVISLVMRF 886 (1082)
Q Consensus 865 ~iaIvG~SGsGKSTL~~lL~gl 886 (1082)
.+||+|.+||||||+++.|..+
T Consensus 5 IIgitG~~gSGKstva~~l~~~ 26 (191)
T d1uf9a_ 5 IIGITGNIGSGKSTVAALLRSW 26 (191)
T ss_dssp EEEEEECTTSCHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999898877899999999987
|
| >d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.21 E-value=0.11 Score=26.06 Aligned_cols=23 Identities=26% Similarity=0.430 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHHHHCC
Q ss_conf 99998499880899999997078
Q 001411 235 TFAFVGPSGSGKSTIISMVQRLY 257 (1082)
Q Consensus 235 ~~~ivG~sGsGKSTll~~l~g~~ 257 (1082)
++.|.||.||||||..+.|+..+
T Consensus 3 iI~i~GppGSGKsT~a~~La~~~ 25 (194)
T d1teva_ 3 VVFVLGGPGAGKGTQCARIVEKY 25 (194)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99997999999899999999986
|
| >d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=89.16 E-value=0.14 Score=24.97 Aligned_cols=45 Identities=27% Similarity=0.262 Sum_probs=33.2
Q ss_pred EEECCCEEEEECCCCCCHHHHHHHHHCCCCC--CCCEEEECCCCCCC
Q ss_conf 7628958999838999778899988132669--84189999950799
Q 001411 859 KVSAGRSLAVVGQSGSGKSTVISLVMRFYDP--ISGTVLIDGYDIRT 903 (1082)
Q Consensus 859 ~I~~Ge~iaIvG~SGsGKSTL~~lL~gl~~p--~~G~I~idg~di~~ 903 (1082)
.=++|..+.|.|.|||||||+++.|...+.. ..-.+.+||-+++.
T Consensus 20 ~~~kg~vIwltGlsGsGKTTia~~L~~~l~~~~~~~~~~ldgD~iR~ 66 (208)
T d1m7ga_ 20 RNQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNIRF 66 (208)
T ss_dssp HTSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHHTT
T ss_pred HCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCEEEEECCHHHHH
T ss_conf 58998699998999999899999999887774275089975367887
|
| >d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermotoga maritima [TaxId: 2336]
Probab=89.16 E-value=0.42 Score=21.10 Aligned_cols=31 Identities=23% Similarity=0.434 Sum_probs=19.9
Q ss_pred EEEEECCCEEEEECCCCCCHHHHHHHHHHCC
Q ss_conf 3887489899998499880899999997078
Q 001411 227 NFSVDAGKTFAFVGPSGSGKSTIISMVQRLY 257 (1082)
Q Consensus 227 s~~i~~G~~~~ivG~sGsGKSTll~~l~g~~ 257 (1082)
|+.-.+..+++++||+|+||||.+-=|+..+
T Consensus 5 ~~~~~~p~vi~lvGptGvGKTTTiAKLAa~~ 35 (213)
T d1vmaa2 5 NVPPEPPFVIMVVGVNGTGKTTSCGKLAKMF 35 (213)
T ss_dssp CCCSSSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCCCCCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 6799999899998999998899999999999
|
| >d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Phosphoribulokinase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=89.15 E-value=0.069 Score=27.68 Aligned_cols=25 Identities=24% Similarity=0.538 Sum_probs=21.6
Q ss_pred CEEEEECCCCCCHHHHHHHHHHCCC
Q ss_conf 8999984998808999999970788
Q 001411 234 KTFAFVGPSGSGKSTIISMVQRLYE 258 (1082)
Q Consensus 234 ~~~~ivG~sGsGKSTll~~l~g~~~ 258 (1082)
=+++|.|+|||||||+.+.+...+.
T Consensus 5 pIIgIaG~SGSGKTTva~~l~~i~~ 29 (288)
T d1a7ja_ 5 PIISVTGSSGAGTSTVKHTFDQIFR 29 (288)
T ss_dssp CEEEEESCC---CCTHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 8999989997809999999999971
|
| >d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyribonucleoside kinase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=89.14 E-value=0.11 Score=26.05 Aligned_cols=27 Identities=22% Similarity=0.410 Sum_probs=23.0
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 895899983899977889998813266
Q 001411 862 AGRSLAVVGQSGSGKSTVISLVMRFYD 888 (1082)
Q Consensus 862 ~Ge~iaIvG~SGsGKSTL~~lL~gl~~ 888 (1082)
+.-.|+|-|..||||||++++|...+.
T Consensus 8 kp~~I~ieG~~GsGKTTl~~~L~~~l~ 34 (197)
T d2vp4a1 8 QPFTVLIEGNIGSGKTTYLNHFEKYKN 34 (197)
T ss_dssp CCEEEEEECSTTSCHHHHHHTTGGGTT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 861999889999888999999998707
|
| >d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Haemophilus influenzae [TaxId: 727]
Probab=89.11 E-value=0.14 Score=25.03 Aligned_cols=21 Identities=33% Similarity=0.558 Sum_probs=18.9
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 899983899977889998813
Q 001411 865 SLAVVGQSGSGKSTVISLVMR 885 (1082)
Q Consensus 865 ~iaIvG~SGsGKSTL~~lL~g 885 (1082)
.+||+|..||||||+++.|..
T Consensus 4 iIgITG~igSGKStv~~~l~~ 24 (205)
T d1jjva_ 4 IVGLTGGIGSGKTTIANLFTD 24 (205)
T ss_dssp EEEEECSTTSCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999888887889999999998
|
| >d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Erwinia chrysanthemi [TaxId: 556]
Probab=89.07 E-value=0.13 Score=25.45 Aligned_cols=31 Identities=26% Similarity=0.354 Sum_probs=23.4
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECC
Q ss_conf 58999838999778899988132669841899999
Q 001411 864 RSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDG 898 (1082)
Q Consensus 864 e~iaIvG~SGsGKSTL~~lL~gl~~p~~G~I~idg 898 (1082)
+.+-++|++||||||+.+.|...+. --++|+
T Consensus 3 ~~Iil~G~~GsGKSTia~~LA~~Lg----~~~id~ 33 (170)
T d1e6ca_ 3 EPIFMVGARGCGMTTVGRELARALG----YEFVDT 33 (170)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHT----CEEEEH
T ss_pred CCEEEECCCCCCHHHHHHHHHHHHC----CCEEEH
T ss_conf 9889988999988999999999949----987865
|
| >d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=89.07 E-value=0.15 Score=24.91 Aligned_cols=23 Identities=26% Similarity=0.508 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHHHCC
Q ss_conf 99998499880899999997078
Q 001411 235 TFAFVGPSGSGKSTIISMVQRLY 257 (1082)
Q Consensus 235 ~~~ivG~sGsGKSTll~~l~g~~ 257 (1082)
.+.|+||.||||||+.+.|+-.+
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~~ 24 (182)
T d1zina1 2 NLVLMGLPGAGKGTQAEKIVAAY 24 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 89998899999899999999987
|
| >d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: LAO/AO transport system kinase ArgK species: Escherichia coli [TaxId: 562]
Probab=89.05 E-value=0.08 Score=27.14 Aligned_cols=28 Identities=25% Similarity=0.353 Sum_probs=23.2
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHCCCCC
Q ss_conf 9899998499880899999997078899
Q 001411 233 GKTFAFVGPSGSGKSTIISMVQRLYEPT 260 (1082)
Q Consensus 233 G~~~~ivG~sGsGKSTll~~l~g~~~~~ 260 (1082)
.-.++|+|+.|+|||||+..+.+.+...
T Consensus 54 ~~~IgitG~pGaGKSTLi~~l~~~~~~~ 81 (327)
T d2p67a1 54 TLRLGVTGTPGAGKSTFLEAFGMLLIRE 81 (327)
T ss_dssp SEEEEEEECTTSCHHHHHHHHHHHHHHT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHC
T ss_conf 3289743899998999999999999756
|
| >d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Probab=88.99 E-value=0.16 Score=24.59 Aligned_cols=23 Identities=30% Similarity=0.499 Sum_probs=21.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 89998389997788999881326
Q 001411 865 SLAVVGQSGSGKSTVISLVMRFY 887 (1082)
Q Consensus 865 ~iaIvG~SGsGKSTL~~lL~gl~ 887 (1082)
+|+++|++|+|||||++.|+|--
T Consensus 7 ~I~lvG~~~~GKSSLin~l~~~~ 29 (178)
T d1wf3a1 7 FVAIVGKPNVGKSTLLNNLLGVK 29 (178)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99999999999999999996888
|
| >d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Escherichia coli [TaxId: 562]
Probab=88.97 E-value=0.18 Score=24.17 Aligned_cols=27 Identities=30% Similarity=0.386 Sum_probs=23.7
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHCCC
Q ss_conf 898999984998808999999970788
Q 001411 232 AGKTFAFVGPSGSGKSTIISMVQRLYE 258 (1082)
Q Consensus 232 ~G~~~~ivG~sGsGKSTll~~l~g~~~ 258 (1082)
+|++++|-|+-||||||+++.|...+.
T Consensus 1 rgkfIviEG~dGsGKsT~~~~L~~~L~ 27 (210)
T d4tmka_ 1 RSKYIVIEGLEGAGKTTARNVVVETLE 27 (210)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 987899989988879999999999999
|
| >d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=88.85 E-value=0.16 Score=24.61 Aligned_cols=25 Identities=32% Similarity=0.503 Sum_probs=22.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 8999838999778899988132669
Q 001411 865 SLAVVGQSGSGKSTVISLVMRFYDP 889 (1082)
Q Consensus 865 ~iaIvG~SGsGKSTL~~lL~gl~~p 889 (1082)
++||-||+||||||++++|..-|.-
T Consensus 5 ~IaIdGp~GsGKgT~ak~La~~lg~ 29 (223)
T d1q3ta_ 5 QIAIDGPASSGKSTVAKIIAKDFGF 29 (223)
T ss_dssp EEEEECSSCSSHHHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCC
T ss_conf 9997899987989999999999699
|
| >d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=88.85 E-value=0.16 Score=24.52 Aligned_cols=23 Identities=26% Similarity=0.483 Sum_probs=20.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 89998389997788999881326
Q 001411 865 SLAVVGQSGSGKSTVISLVMRFY 887 (1082)
Q Consensus 865 ~iaIvG~SGsGKSTL~~lL~gl~ 887 (1082)
+|+++|++|+|||||++.|+|..
T Consensus 2 ~V~liG~~n~GKSsLi~~L~~~~ 24 (171)
T d1mkya1 2 TVLIVGRPNVGKSTLFNKLVKKK 24 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89999999998999999996777
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Probab=88.84 E-value=0.21 Score=23.55 Aligned_cols=23 Identities=22% Similarity=0.346 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHHHCC
Q ss_conf 99998499880899999997078
Q 001411 235 TFAFVGPSGSGKSTIISMVQRLY 257 (1082)
Q Consensus 235 ~~~ivG~sGsGKSTll~~l~g~~ 257 (1082)
.++++|+.|+|||||++.+.+..
T Consensus 4 ki~ivG~~~~GKTsLi~~l~~~~ 26 (165)
T d1ksha_ 4 RLLMLGLDNAGKTTILKKFNGED 26 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHTTCC
T ss_pred EEEEECCCCCCHHHHHHHHCCCC
T ss_conf 99999999989999999980899
|
| >d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: di-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.84 E-value=0.29 Score=22.40 Aligned_cols=21 Identities=29% Similarity=0.514 Sum_probs=17.4
Q ss_pred EEEEECCCCCCHHHHHHHHHH
Q ss_conf 999984998808999999970
Q 001411 235 TFAFVGPSGSGKSTIISMVQR 255 (1082)
Q Consensus 235 ~~~ivG~sGsGKSTll~~l~g 255 (1082)
.++++|.+|+|||||++-+.+
T Consensus 4 Ki~viG~~~vGKTsLi~r~~~ 24 (171)
T d2erxa1 4 RVAVFGAGGVGKSSLVLRFVK 24 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 899999899798999999970
|
| >d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=88.82 E-value=0.18 Score=24.24 Aligned_cols=29 Identities=24% Similarity=0.420 Sum_probs=25.4
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHHCCCC
Q ss_conf 48989999849988089999999707889
Q 001411 231 DAGKTFAFVGPSGSGKSTIISMVQRLYEP 259 (1082)
Q Consensus 231 ~~G~~~~ivG~sGsGKSTll~~l~g~~~~ 259 (1082)
.+|.++++-|+.||||||++++|...+..
T Consensus 1 ~kGk~I~iEG~DGsGKST~~~~L~~~L~~ 29 (214)
T d1tmka_ 1 GRGKLILIEGLDRTGKTTQCNILYKKLQP 29 (214)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHHTTT
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 97689999899888699999999999971
|
| >d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor SelB, N-terminal domain species: Methanococcus maripaludis [TaxId: 39152]
Probab=88.79 E-value=0.15 Score=24.74 Aligned_cols=22 Identities=18% Similarity=0.403 Sum_probs=19.2
Q ss_pred EEEECCCCCCHHHHHHHHHHCC
Q ss_conf 9998499880899999997078
Q 001411 236 FAFVGPSGSGKSTIISMVQRLY 257 (1082)
Q Consensus 236 ~~ivG~sGsGKSTll~~l~g~~ 257 (1082)
++|+|+..+|||||++.|.+..
T Consensus 8 IaiiG~~naGKSTL~n~L~~~~ 29 (179)
T d1wb1a4 8 LGIFGHIDHGKTTLSKVLTEIA 29 (179)
T ss_dssp EEEEECTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCHHHHHHHHHHHC
T ss_conf 9999077870999999999743
|
| >d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.56 E-value=0.19 Score=23.93 Aligned_cols=29 Identities=21% Similarity=0.221 Sum_probs=25.5
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 28958999838999778899988132669
Q 001411 861 SAGRSLAVVGQSGSGKSTVISLVMRFYDP 889 (1082)
Q Consensus 861 ~~Ge~iaIvG~SGsGKSTL~~lL~gl~~p 889 (1082)
++|..|+|.|+-||||||++++|...+..
T Consensus 1 ~rG~lI~ieG~dGsGKsT~~~~L~~~L~~ 29 (209)
T d1nn5a_ 1 RRGALIVLEGVDRAGKSTQSRKLVEALCA 29 (209)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 98059999899888999999999999987
|
| >d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=88.56 E-value=0.19 Score=23.88 Aligned_cols=31 Identities=19% Similarity=0.418 Sum_probs=26.3
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCE
Q ss_conf 89589998389997788999881326698418
Q 001411 862 AGRSLAVVGQSGSGKSTVISLVMRFYDPISGT 893 (1082)
Q Consensus 862 ~Ge~iaIvG~SGsGKSTL~~lL~gl~~p~~G~ 893 (1082)
+|..|+|-|..||||||++++|...+.. .|.
T Consensus 2 kGk~I~iEG~DGsGKST~~~~L~~~L~~-~~~ 32 (214)
T d1tmka_ 2 RGKLILIEGLDRTGKTTQCNILYKKLQP-NCK 32 (214)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHTTT-SEE
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHHHH-CCE
T ss_conf 7689999899888699999999999971-977
|
| >d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein engB species: Pyrococcus horikoshii [TaxId: 53953]
Probab=88.54 E-value=0.15 Score=24.86 Aligned_cols=22 Identities=32% Similarity=0.403 Sum_probs=20.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 8999838999778899988132
Q 001411 865 SLAVVGQSGSGKSTVISLVMRF 886 (1082)
Q Consensus 865 ~iaIvG~SGsGKSTL~~lL~gl 886 (1082)
.|+|+|++|+|||||++.|.|-
T Consensus 2 ~I~lvG~~nvGKSsLin~l~~~ 23 (184)
T d2cxxa1 2 TIIFAGRSNVGKSTLIYRLTGK 23 (184)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 8999999998899999999689
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=88.52 E-value=0.18 Score=24.23 Aligned_cols=22 Identities=27% Similarity=0.546 Sum_probs=20.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 8999838999778899988132
Q 001411 865 SLAVVGQSGSGKSTVISLVMRF 886 (1082)
Q Consensus 865 ~iaIvG~SGsGKSTL~~lL~gl 886 (1082)
+|+|+|++|+|||||++.|.+-
T Consensus 5 ~V~lvG~~n~GKTSLln~l~~~ 26 (209)
T d1nrjb_ 5 SIIIAGPQNSGKTSLLTLLTTD 26 (209)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999999998899999999679
|
| >d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Campylobacter jejuni [TaxId: 197]
Probab=88.50 E-value=0.15 Score=24.91 Aligned_cols=29 Identities=31% Similarity=0.501 Sum_probs=23.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEC
Q ss_conf 899983899977889998813266984189999
Q 001411 865 SLAVVGQSGSGKSTVISLVMRFYDPISGTVLID 897 (1082)
Q Consensus 865 ~iaIvG~SGsGKSTL~~lL~gl~~p~~G~I~id 897 (1082)
.+.|+|++||||||+.+.|...+ |--++|
T Consensus 2 ~I~liG~~GsGKsTi~k~La~~l----~~~~~d 30 (161)
T d1viaa_ 2 NIVFIGFMGSGKSTLARALAKDL----DLVFLD 30 (161)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH----TCEEEE
T ss_pred CEEEECCCCCCHHHHHHHHHHHH----CCCEEE
T ss_conf 39998999998899999999983----998783
|
| >d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Escherichia coli [TaxId: 562]
Probab=88.39 E-value=0.17 Score=24.33 Aligned_cols=24 Identities=29% Similarity=0.555 Sum_probs=21.7
Q ss_pred EEEEECCCCCCHHHHHHHHHHCCC
Q ss_conf 999984998808999999970788
Q 001411 235 TFAFVGPSGSGKSTIISMVQRLYE 258 (1082)
Q Consensus 235 ~~~ivG~sGsGKSTll~~l~g~~~ 258 (1082)
+++|.||.||||||+.+.|+..+.
T Consensus 5 iI~I~GppGSGKgT~ak~La~~~g 28 (225)
T d1ckea_ 5 VITIDGPSGAGKGTLCKAMAEALQ 28 (225)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 899779998898999999999969
|
| >d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.37 E-value=0.19 Score=24.05 Aligned_cols=116 Identities=18% Similarity=0.205 Sum_probs=56.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHHHHCCEEEECCCCCCCCCCHHHHHCCCCCCCCHHHHH
Q ss_conf 89998389997788999881326698418999995079999788733328883667666424788832399887999999
Q 001411 865 SLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRKIGLVQQEPALFSTTIYENIKYGNEDASEIELM 944 (1082)
Q Consensus 865 ~iaIvG~SGsGKSTL~~lL~gl~~p~~G~I~idg~di~~~~~~~lr~~i~~vpQ~~~lf~gTIreNl~~~~~~~~d~ei~ 944 (1082)
+|.|+||.||||||.++.|..-| |-..|+- -+-+|..+ .+...-+...+.+.+.-+. ...|+.+.
T Consensus 3 iI~i~GppGSGKsT~a~~La~~~----g~~~i~~-------g~llR~~~---~~~~~~~~~~~~~~~~~~~-~v~d~~~~ 67 (194)
T d1teva_ 3 VVFVLGGPGAGKGTQCARIVEKY----GYTHLSA-------GELLRDER---KNPDSQYGELIEKYIKEGK-IVPVEITI 67 (194)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH----CCEEEEH-------HHHHHHHH---HCTTSTTHHHHHHHHHTTC-CCCHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH----CCCEECH-------HHHHHHHH---HHHHHHHHHHHHHHHHCCC-CCCCCHHH
T ss_conf 99997999999899999999986----9926768-------89999988---7620468999999970697-21134036
Q ss_pred HHHHHHCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCC--CE-EEEECC
Q ss_conf 999990088999627465444226999989924999999999970399--87-785177
Q 001411 945 KATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNP--SI-LLLDEA 1000 (1082)
Q Consensus 945 ~a~~~a~l~~~I~~lp~gldt~i~e~g~~LSgGQkQrlaLARAll~~p--~I-LiLDEp 1000 (1082)
..+... +........ .-+..+.+ | +.-.+.|.-.+.+.+-... .+ +++|-+
T Consensus 68 ~~~~~~-~~~~~~~~~-~~~~~~~~-g--~pr~~~~~~~l~~~~~~~~~~~~vi~l~~~ 121 (194)
T d1teva_ 68 SLLKRE-MDQTMAANA-QKNKFLID-G--FPRNQDNLQGWNKTMDGKADVSFVLFFDCN 121 (194)
T ss_dssp HHHHHH-HHHHHHHCT-TCCEEEEE-S--CCCSHHHHHHHHHHHTTTCEEEEEEEEECC
T ss_pred HHHHHH-HCCCCHHHH-CCCCEEEC-C--CHHHHHHHHHHHHHHHCCCCCCEEEEECCC
T ss_conf 788876-412100011-24511101-1--030489999986442105543389962476
|
| >d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein RheB species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.37 E-value=0.31 Score=22.12 Aligned_cols=21 Identities=24% Similarity=0.333 Sum_probs=17.5
Q ss_pred EEEEECCCCCCHHHHHHHHHH
Q ss_conf 999984998808999999970
Q 001411 235 TFAFVGPSGSGKSTIISMVQR 255 (1082)
Q Consensus 235 ~~~ivG~sGsGKSTll~~l~g 255 (1082)
.++++|++|+|||||++.+.+
T Consensus 6 Kv~liG~~~vGKTsLl~~~~~ 26 (167)
T d1xtqa1 6 KIAILGYRSVGKSSLTIQFVE 26 (167)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 899999899298999999971
|
| >d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=88.34 E-value=0.16 Score=24.67 Aligned_cols=35 Identities=26% Similarity=0.480 Sum_probs=25.7
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHCCCCCCCEEEECC
Q ss_conf 8989999849988089999999707889976799989
Q 001411 232 AGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDG 268 (1082)
Q Consensus 232 ~G~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~i~g 268 (1082)
|+..+.++||+|||||.|.+.++..+.. --+.+++
T Consensus 48 ~~~~iLl~GPpG~GKT~lAkalA~~~~~--~~~~i~~ 82 (309)
T d1ofha_ 48 TPKNILMIGPTGVGKTEIARRLAKLANA--PFIKVEA 82 (309)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHTC--CEEEEEG
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHCCCC--CHHCCCC
T ss_conf 9866999899998888999998621322--1000344
|
| >d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Probab=88.31 E-value=0.12 Score=25.57 Aligned_cols=26 Identities=31% Similarity=0.471 Sum_probs=21.6
Q ss_pred CEEEEECCCCCCHHHHHHHHHHCCCC
Q ss_conf 89999849988089999999707889
Q 001411 234 KTFAFVGPSGSGKSTIISMVQRLYEP 259 (1082)
Q Consensus 234 ~~~~ivG~sGsGKSTll~~l~g~~~~ 259 (1082)
+++.|.|++||||||+.+.|+..+..
T Consensus 2 kiivi~G~~GsGKTT~~~~La~~L~~ 27 (194)
T d1nksa_ 2 KIGIVTGIPGVGKSTVLAKVKEILDN 27 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 19999898998989999999999987
|
| >d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Maize (Zea mays) [TaxId: 4577]
Probab=88.28 E-value=0.13 Score=25.23 Aligned_cols=23 Identities=30% Similarity=0.481 Sum_probs=21.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 89998389997788999881326
Q 001411 865 SLAVVGQSGSGKSTVISLVMRFY 887 (1082)
Q Consensus 865 ~iaIvG~SGsGKSTL~~lL~gl~ 887 (1082)
++.|.||.||||||+++.|..-|
T Consensus 5 ~I~i~GppGsGKsT~a~~La~~~ 27 (189)
T d1zaka1 5 KVMISGAPASGKGTQCELIKTKY 27 (189)
T ss_dssp CEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99998899999899999999987
|
| >d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Escherichia coli [TaxId: 562]
Probab=88.27 E-value=0.2 Score=23.83 Aligned_cols=27 Identities=22% Similarity=0.466 Sum_probs=24.5
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 895899983899977889998813266
Q 001411 862 AGRSLAVVGQSGSGKSTVISLVMRFYD 888 (1082)
Q Consensus 862 ~Ge~iaIvG~SGsGKSTL~~lL~gl~~ 888 (1082)
+|..|+|-|+-||||||+++.|...+.
T Consensus 1 rgkfIviEG~dGsGKsT~~~~L~~~L~ 27 (210)
T d4tmka_ 1 RSKYIVIEGLEGAGKTTARNVVVETLE 27 (210)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 987899989988879999999999999
|
| >d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=88.21 E-value=0.1 Score=26.27 Aligned_cols=29 Identities=14% Similarity=0.234 Sum_probs=21.5
Q ss_pred EEEEECCCCCCHHHHHHHHH---HCCCCCCCEE
Q ss_conf 99998499880899999997---0788997679
Q 001411 235 TFAFVGPSGSGKSTIISMVQ---RLYEPTSGKI 264 (1082)
Q Consensus 235 ~~~ivG~sGsGKSTll~~l~---g~~~~~~G~i 264 (1082)
-++|+|+.|+|||||...|+ |..+ ..|++
T Consensus 8 ni~i~gh~~~GKTtL~e~ll~~~g~~~-~~g~v 39 (276)
T d2bv3a2 8 NIGIAAHIDAGKTTTTERILYYTGRIH-KIGEV 39 (276)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHTSSC-C----
T ss_pred EEEEEECCCCCHHHHHHHHHHHCCCCC-CCCCE
T ss_conf 999995898998999999999648534-02336
|
| >d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Thermus thermophilus [TaxId: 274]
Probab=88.15 E-value=0.48 Score=20.60 Aligned_cols=25 Identities=32% Similarity=0.485 Sum_probs=21.7
Q ss_pred CEEEEECCCCCCHHHHHHHHHHCCC
Q ss_conf 8999984998808999999970788
Q 001411 234 KTFAFVGPSGSGKSTIISMVQRLYE 258 (1082)
Q Consensus 234 ~~~~ivG~sGsGKSTll~~l~g~~~ 258 (1082)
.-+.+.||.|||||++++.++..+.
T Consensus 43 ~giLl~GppGtGKT~la~aia~~~~ 67 (247)
T d1ixza_ 43 KGVLLVGPPGVGKTHLARAVAGEAR 67 (247)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 6488766898883599999998739
|
| >d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=88.09 E-value=0.14 Score=24.98 Aligned_cols=22 Identities=41% Similarity=0.484 Sum_probs=17.1
Q ss_pred EEEECCCCCCHHHHHHHHHHCC
Q ss_conf 9998499880899999997078
Q 001411 236 FAFVGPSGSGKSTIISMVQRLY 257 (1082)
Q Consensus 236 ~~ivG~sGsGKSTll~~l~g~~ 257 (1082)
+.++|++||||||+.+.|+..+
T Consensus 4 IvliG~~G~GKSTig~~La~~l 25 (165)
T d2iyva1 4 AVLVGLPGSGKSTIGRRLAKAL 25 (165)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 8998899998899999999984
|
| >d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=88.05 E-value=0.2 Score=23.76 Aligned_cols=22 Identities=32% Similarity=0.542 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 8999838999778899988132
Q 001411 865 SLAVVGQSGSGKSTVISLVMRF 886 (1082)
Q Consensus 865 ~iaIvG~SGsGKSTL~~lL~gl 886 (1082)
.|+|+|.+|+|||||++.|.|-
T Consensus 7 ~I~iiG~~nvGKSSLin~L~~~ 28 (179)
T d1egaa1 7 FIAIVGRPNVGKSTLLNKLLGQ 28 (179)
T ss_dssp EEEEECSSSSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999979999899999999589
|
| >d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus globisporus [TaxId: 1459]
Probab=88.04 E-value=0.15 Score=24.96 Aligned_cols=23 Identities=26% Similarity=0.495 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHHHCC
Q ss_conf 99998499880899999997078
Q 001411 235 TFAFVGPSGSGKSTIISMVQRLY 257 (1082)
Q Consensus 235 ~~~ivG~sGsGKSTll~~l~g~~ 257 (1082)
.+.|+||.||||||+.+.|+-.+
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~~ 24 (182)
T d1s3ga1 2 NIVLMGLPGAGKGTQADRIVEKY 24 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 89998899998799999999987
|
| >d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Lactobacillus casei [TaxId: 1582]
Probab=87.93 E-value=0.3 Score=22.35 Aligned_cols=33 Identities=21% Similarity=0.170 Sum_probs=22.9
Q ss_pred CCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHH
Q ss_conf 4101038874898999984998808999999970
Q 001411 222 VFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQR 255 (1082)
Q Consensus 222 ~l~~is~~i~~G~~~~ivG~sGsGKSTll~~l~g 255 (1082)
.++..-+ --.|.-+.|.|+||+||||+...+..
T Consensus 4 ~lH~~~v-~~~g~gvl~~G~sG~GKStlal~l~~ 36 (176)
T d1kkma_ 4 SMHGVLV-DIYGLGVLITGDSGVGKSETALELVQ 36 (176)
T ss_dssp EEEEEEE-EETTEEEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEEE-EECCEEEEEEECCCCCHHHHHHHHHH
T ss_conf 2899999-99999999980899998999999998
|
| >d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=87.83 E-value=0.25 Score=22.96 Aligned_cols=27 Identities=22% Similarity=0.364 Sum_probs=23.3
Q ss_pred EEECCCEEEEECCCCCCHHHHHHHHHH
Q ss_conf 874898999984998808999999970
Q 001411 229 SVDAGKTFAFVGPSGSGKSTIISMVQR 255 (1082)
Q Consensus 229 ~i~~G~~~~ivG~sGsGKSTll~~l~g 255 (1082)
-+++|+++.|.|++|||||||+.-++-
T Consensus 30 Gi~~G~~~li~G~pGsGKT~l~lq~~~ 56 (251)
T d1szpa2 30 GVETGSITELFGEFRTGKSQLCHTLAV 56 (251)
T ss_dssp SEESSSEEEEEESTTSSHHHHHHHHTT
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 986996999983899988999999999
|
| >d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=87.76 E-value=0.24 Score=23.05 Aligned_cols=26 Identities=27% Similarity=0.429 Sum_probs=22.3
Q ss_pred CEEEEECCCCCCHHHHHHHHHHCCCC
Q ss_conf 89999849988089999999707889
Q 001411 234 KTFAFVGPSGSGKSTIISMVQRLYEP 259 (1082)
Q Consensus 234 ~~~~ivG~sGsGKSTll~~l~g~~~~ 259 (1082)
..+.+.||+|+||||++++++..+..
T Consensus 53 ~~lll~GPpG~GKTt~a~~la~~~~~ 78 (253)
T d1sxja2 53 RAAMLYGPPGIGKTTAAHLVAQELGY 78 (253)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHTTC
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 44999879999888999999999875
|
| >d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Escherichia coli [TaxId: 562]
Probab=87.75 E-value=0.19 Score=23.89 Aligned_cols=22 Identities=41% Similarity=0.554 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHHHC
Q ss_conf 9999849988089999999707
Q 001411 235 TFAFVGPSGSGKSTIISMVQRL 256 (1082)
Q Consensus 235 ~~~ivG~sGsGKSTll~~l~g~ 256 (1082)
+++|+|+.||||||.++.+...
T Consensus 5 iIgitG~igSGKStv~~~l~~~ 26 (208)
T d1vhta_ 5 IVALTGGIGSGKSTVANAFADL 26 (208)
T ss_dssp EEEEECCTTSCHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9997898868899999999987
|
| >d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=87.66 E-value=0.21 Score=23.54 Aligned_cols=23 Identities=30% Similarity=0.575 Sum_probs=21.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 89998389997788999881326
Q 001411 865 SLAVVGQSGSGKSTVISLVMRFY 887 (1082)
Q Consensus 865 ~iaIvG~SGsGKSTL~~lL~gl~ 887 (1082)
++.|+|+.||||||+++.|..-|
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~~ 24 (182)
T d1zina1 2 NLVLMGLPGAGKGTQAEKIVAAY 24 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 89998899999899999999987
|
| >d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Archaeon Acidianus ambivalens [TaxId: 2283]
Probab=87.61 E-value=0.51 Score=20.36 Aligned_cols=27 Identities=26% Similarity=0.447 Sum_probs=19.1
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHCCC
Q ss_conf 898999984998808999999970788
Q 001411 232 AGKTFAFVGPSGSGKSTIISMVQRLYE 258 (1082)
Q Consensus 232 ~G~~~~ivG~sGsGKSTll~~l~g~~~ 258 (1082)
...+++++||+|+||||.+-=|+..+.
T Consensus 11 ~p~vi~lvGptGvGKTTTiAKLA~~~~ 37 (211)
T d1j8yf2 11 IPYVIMLVGVQGTGKATTAGKLAYFYK 37 (211)
T ss_dssp SSEEEEEECSCCC----HHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 998999989999998999999999999
|
| >d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=87.61 E-value=0.22 Score=23.38 Aligned_cols=24 Identities=21% Similarity=0.465 Sum_probs=21.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 899983899977889998813266
Q 001411 865 SLAVVGQSGSGKSTVISLVMRFYD 888 (1082)
Q Consensus 865 ~iaIvG~SGsGKSTL~~lL~gl~~ 888 (1082)
.+.++|.+||||||+++.|.+.+.
T Consensus 4 li~l~GlpgsGKSTla~~L~~~l~ 27 (213)
T d1bifa1 4 LIVMVGLPARGKTYISKKLTRYLN 27 (213)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 999989999999999999999997
|
| >d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=87.60 E-value=0.51 Score=20.35 Aligned_cols=26 Identities=23% Similarity=0.374 Sum_probs=22.2
Q ss_pred EEECCCEEEEECCCCCCHHHHHHHHH
Q ss_conf 87489899998499880899999997
Q 001411 229 SVDAGKTFAFVGPSGSGKSTIISMVQ 254 (1082)
Q Consensus 229 ~i~~G~~~~ivG~sGsGKSTll~~l~ 254 (1082)
-+++|+++.|.|++|+|||+|+.-++
T Consensus 22 Gi~~G~~~~I~G~~G~GKT~la~~~~ 47 (242)
T d1tf7a1 22 GLPIGRSTLVSGTSGTGKTLFSIQFL 47 (242)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHH
T ss_pred CCCCCEEEEEEECCCCCHHHHHHHHH
T ss_conf 99698399999479999999999999
|
| >d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Escherichia coli [TaxId: 562]
Probab=87.59 E-value=0.2 Score=23.78 Aligned_cols=23 Identities=22% Similarity=0.420 Sum_probs=16.9
Q ss_pred EEEEECCCCCCHHHHHHHHHHCC
Q ss_conf 99998499880899999997078
Q 001411 235 TFAFVGPSGSGKSTIISMVQRLY 257 (1082)
Q Consensus 235 ~~~ivG~sGsGKSTll~~l~g~~ 257 (1082)
.+.++||.||||||..+.|+-.+
T Consensus 2 ~I~i~G~pGSGKsT~~~~La~~~ 24 (179)
T d1e4va1 2 RIILLGAPVAGKGTQAQFIMEKY 24 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 89998799999899999999986
|
| >d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Probab=87.39 E-value=0.14 Score=25.18 Aligned_cols=24 Identities=42% Similarity=0.486 Sum_probs=21.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 899983899977889998813266
Q 001411 865 SLAVVGQSGSGKSTVISLVMRFYD 888 (1082)
Q Consensus 865 ~iaIvG~SGsGKSTL~~lL~gl~~ 888 (1082)
.+.|.|++||||||+++.|...+.
T Consensus 3 iivi~G~~GsGKTT~~~~La~~L~ 26 (194)
T d1nksa_ 3 IGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 999989899898999999999998
|
| >d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein ypt7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=87.35 E-value=0.23 Score=23.30 Aligned_cols=22 Identities=23% Similarity=0.392 Sum_probs=19.0
Q ss_pred EEEEECCCCCCHHHHHHHHHHC
Q ss_conf 9999849988089999999707
Q 001411 235 TFAFVGPSGSGKSTIISMVQRL 256 (1082)
Q Consensus 235 ~~~ivG~sGsGKSTll~~l~g~ 256 (1082)
.++++|++|+|||||++.+.+-
T Consensus 4 Ki~~vG~~~vGKSsLi~~~~~~ 25 (175)
T d1ky3a_ 4 KVIILGDSGVGKTSLMHRYVND 25 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999999996989999999709
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Probab=87.29 E-value=0.23 Score=23.22 Aligned_cols=22 Identities=23% Similarity=0.338 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 8999838999778899988132
Q 001411 865 SLAVVGQSGSGKSTVISLVMRF 886 (1082)
Q Consensus 865 ~iaIvG~SGsGKSTL~~lL~gl 886 (1082)
++.++|++|+|||||++-+.+-
T Consensus 2 kivlvG~~~vGKSsLi~~l~~~ 23 (160)
T d1r8sa_ 2 RILMVGLDAAGKTTILYKLKLG 23 (160)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 8999999998989999999659
|
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Probab=87.27 E-value=0.22 Score=23.50 Aligned_cols=23 Identities=26% Similarity=0.378 Sum_probs=20.3
Q ss_pred CEEEEECCCCCCHHHHHHHHHHC
Q ss_conf 89999849988089999999707
Q 001411 234 KTFAFVGPSGSGKSTIISMVQRL 256 (1082)
Q Consensus 234 ~~~~ivG~sGsGKSTll~~l~g~ 256 (1082)
+.++|+|+.|+|||||++.+.+-
T Consensus 1 k~V~ivG~~~~GKTsLl~~l~~~ 23 (207)
T d2fh5b1 1 RAVLFVGLCDSGKTLLFVRLLTG 23 (207)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHHCC
T ss_conf 98999999998989999999809
|
| >d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Escherichia coli [TaxId: 562]
Probab=87.27 E-value=0.24 Score=23.14 Aligned_cols=25 Identities=24% Similarity=0.349 Sum_probs=22.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 8999838999778899988132669
Q 001411 865 SLAVVGQSGSGKSTVISLVMRFYDP 889 (1082)
Q Consensus 865 ~iaIvG~SGsGKSTL~~lL~gl~~p 889 (1082)
.|+|-||.||||||+.+.|..-|.-
T Consensus 5 iI~I~GppGSGKgT~ak~La~~~gl 29 (225)
T d1ckea_ 5 VITIDGPSGAGKGTLCKAMAEALQW 29 (225)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCC
T ss_conf 8997799988989999999999699
|
| >d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: LAO/AO transport system kinase ArgK species: Escherichia coli [TaxId: 562]
Probab=87.25 E-value=0.15 Score=24.86 Aligned_cols=27 Identities=30% Similarity=0.351 Sum_probs=18.9
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 895899983899977889998813266
Q 001411 862 AGRSLAVVGQSGSGKSTVISLVMRFYD 888 (1082)
Q Consensus 862 ~Ge~iaIvG~SGsGKSTL~~lL~gl~~ 888 (1082)
+.-+|||+|+-|||||||+.-|.+.+.
T Consensus 53 ~~~~IgitG~pGaGKSTLi~~l~~~~~ 79 (327)
T d2p67a1 53 NTLRLGVTGTPGAGKSTFLEAFGMLLI 79 (327)
T ss_dssp CSEEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 832897438999989999999999997
|
| >d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Bacillus subtilis [TaxId: 1423]
Probab=87.19 E-value=0.12 Score=25.66 Aligned_cols=22 Identities=36% Similarity=0.522 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 8999838999778899988132
Q 001411 865 SLAVVGQSGSGKSTVISLVMRF 886 (1082)
Q Consensus 865 ~iaIvG~SGsGKSTL~~lL~gl 886 (1082)
.|||+|++++|||||++.|.|-
T Consensus 3 ~VaiiG~~nvGKSSLin~L~~~ 24 (185)
T d1lnza2 3 DVGLVGFPSVGKSTLLSVVSSA 24 (185)
T ss_dssp CEEEESSTTSSHHHHHHHSEEE
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 6999899998799999999689
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Probab=87.16 E-value=0.22 Score=23.44 Aligned_cols=78 Identities=9% Similarity=0.084 Sum_probs=41.4
Q ss_pred CHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHH-HHHHHHHCCCCEEEEEECCCHHHHCCCEEEEEECCEEEEE
Q ss_conf 92499999999997039987785177789897989999-9999986189649998069225530588999959889882
Q 001411 975 SGGQKQRVAIARAILKNPSILLLDEATSALDTASENLI-QEALDKLMEGRTTIMVAHRLSTIRNADKIAVLQQGKVAEI 1052 (1082)
Q Consensus 975 SgGQkQrlaLARAll~~p~ILiLDEpTS~LD~~te~~I-~~~L~~~~~~~TvI~IsHrl~~i~~~DrI~vl~~G~ive~ 1052 (1082)
...+......+...++++++++++=.-..-+...+... .+.++....++.+|++....+........-....-.+.+.
T Consensus 64 ~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~iilv~NK~Dl~~~~~~~~~~~~~~~~~i 142 (161)
T d2gj8a1 64 DEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADITGETLGMSEVNGHALIRL 142 (161)
T ss_dssp SHHHHHHHHHHHHHHHTCSEEEEEEETTTCCCCSHHHHCHHHHHHSCTTCCEEEEEECHHHHCCCCEEEEETTEEEEEC
T ss_pred CCCHHHHHHHHHHHHHHCCCCCEEECCCCCCCHHHHHHHHHHHHHCCCCCCEEECCCHHHHHHHHHHHHHHCCCCEEEE
T ss_conf 5202478999999987413320110256542034555444555420141010204654443355887987279967999
|
| >d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit species: Streptococcus pyogenes [TaxId: 1314]
Probab=87.15 E-value=0.29 Score=22.48 Aligned_cols=35 Identities=26% Similarity=0.421 Sum_probs=27.0
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCC
Q ss_conf 5899983899977889998813266984189999950
Q 001411 864 RSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYD 900 (1082)
Q Consensus 864 e~iaIvG~SGsGKSTL~~lL~gl~~p~~G~I~idg~d 900 (1082)
.-+.+.||.|+||||+++.|++.+. .+-+.+++-+
T Consensus 33 ~~ilL~GpPGtGKT~la~~la~~~~--~~~~~i~~d~ 67 (273)
T d1gvnb_ 33 TAFLLGGQPGSGKTSLRSAIFEETQ--GNVIVIDNDT 67 (273)
T ss_dssp EEEEEECCTTSCTHHHHHHHHHHTT--TCCEEECTHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH--CCEEEEECHH
T ss_conf 7999889799889999999999865--1548983289
|
| >d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=87.15 E-value=0.21 Score=23.54 Aligned_cols=24 Identities=33% Similarity=0.427 Sum_probs=20.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 899983899977889998813266
Q 001411 865 SLAVVGQSGSGKSTVISLVMRFYD 888 (1082)
Q Consensus 865 ~iaIvG~SGsGKSTL~~lL~gl~~ 888 (1082)
++.++|++||||||+.++|...+.
T Consensus 3 ~IvliG~~G~GKSTig~~La~~l~ 26 (165)
T d2iyva1 3 KAVLVGLPGSGKSTIGRRLAKALG 26 (165)
T ss_dssp SEEEECSTTSSHHHHHHHHHHHHT
T ss_pred CEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 489988999988999999999849
|
| >d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=87.06 E-value=0.23 Score=23.27 Aligned_cols=36 Identities=11% Similarity=0.389 Sum_probs=19.9
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCC
Q ss_conf 95899983899977889998813266984189999950
Q 001411 863 GRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYD 900 (1082)
Q Consensus 863 Ge~iaIvG~SGsGKSTL~~lL~gl~~p~~G~I~idg~d 900 (1082)
+..+.++||+|+|||.|++.|.+.+. .--+.+++.+
T Consensus 49 ~~~iLl~GPpG~GKT~lAkalA~~~~--~~~~~i~~s~ 84 (309)
T d1ofha_ 49 PKNILMIGPTGVGKTEIARRLAKLAN--APFIKVEATK 84 (309)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHHT--CCEEEEEGGG
T ss_pred CCEEEEECCCCCCHHHHHHHHHHCCC--CCHHCCCCCC
T ss_conf 86699989999888899999862132--2100034433
|
| >d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL1 [TaxId: 9606]
Probab=87.03 E-value=0.25 Score=23.02 Aligned_cols=22 Identities=23% Similarity=0.436 Sum_probs=19.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 8999838999778899988132
Q 001411 865 SLAVVGQSGSGKSTVISLVMRF 886 (1082)
Q Consensus 865 ~iaIvG~SGsGKSTL~~lL~gl 886 (1082)
+++|||++|+|||||++.+.+-
T Consensus 7 kI~ivG~~~vGKSSLi~~~~~~ 28 (169)
T d1upta_ 7 RILILGLDGAGKTTILYRLQVG 28 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999999998999999999679
|
| >d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cell division protein MukB species: Escherichia coli [TaxId: 562]
Probab=86.97 E-value=0.01 Score=34.62 Aligned_cols=35 Identities=20% Similarity=0.253 Sum_probs=28.3
Q ss_pred CCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 301203876289589998389997788999881326
Q 001411 852 IFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFY 887 (1082)
Q Consensus 852 vL~~isl~I~~Ge~iaIvG~SGsGKSTL~~lL~gl~ 887 (1082)
.+++.++.+.+| .+.|+|+|||||||++.+|.-.+
T Consensus 14 ~~~~~~i~f~~~-~tvi~G~NGsGKStil~Ai~~~L 48 (222)
T d1qhla_ 14 GFFARTFDLDEL-VTTLSGGNGAGKSTTMAAFVTAL 48 (222)
T ss_dssp TEEEEEECHHHH-HHHHHSCCSHHHHHHHHHHHHHH
T ss_pred CEEEEEEECCCC-EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 870279974998-08998899998799999999996
|
| >d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Phosphoribulokinase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=86.93 E-value=0.1 Score=26.30 Aligned_cols=25 Identities=32% Similarity=0.493 Sum_probs=21.6
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 5899983899977889998813266
Q 001411 864 RSLAVVGQSGSGKSTVISLVMRFYD 888 (1082)
Q Consensus 864 e~iaIvG~SGsGKSTL~~lL~gl~~ 888 (1082)
-.|||.|+|||||||+.+.|...+.
T Consensus 5 pIIgIaG~SGSGKTTva~~l~~i~~ 29 (288)
T d1a7ja_ 5 PIISVTGSSGAGTSTVKHTFDQIFR 29 (288)
T ss_dssp CEEEEESCC---CCTHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 8999989997809999999999971
|
| >d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus globisporus [TaxId: 1459]
Probab=86.91 E-value=0.25 Score=22.96 Aligned_cols=23 Identities=26% Similarity=0.560 Sum_probs=21.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 89998389997788999881326
Q 001411 865 SLAVVGQSGSGKSTVISLVMRFY 887 (1082)
Q Consensus 865 ~iaIvG~SGsGKSTL~~lL~gl~ 887 (1082)
+|.|+|+.||||||+++.|..-|
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~~ 24 (182)
T d1s3ga1 2 NIVLMGLPGAGKGTQADRIVEKY 24 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 89998899998799999999987
|
| >d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Escherichia coli [TaxId: 562]
Probab=86.91 E-value=0.27 Score=22.67 Aligned_cols=22 Identities=41% Similarity=0.527 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 8999838999778899988132
Q 001411 865 SLAVVGQSGSGKSTVISLVMRF 886 (1082)
Q Consensus 865 ~iaIvG~SGsGKSTL~~lL~gl 886 (1082)
.+||+|..||||||.++.|..+
T Consensus 5 iIgitG~igSGKStv~~~l~~~ 26 (208)
T d1vhta_ 5 IVALTGGIGSGKSTVANAFADL 26 (208)
T ss_dssp EEEEECCTTSCHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9997898868899999999987
|
| >d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.80 E-value=0.47 Score=20.63 Aligned_cols=30 Identities=30% Similarity=0.454 Sum_probs=21.8
Q ss_pred EEEEECCCCCCHHHHHHHHHH-----CCCCCCCEE
Q ss_conf 999984998808999999970-----788997679
Q 001411 235 TFAFVGPSGSGKSTIISMVQR-----LYEPTSGKI 264 (1082)
Q Consensus 235 ~~~ivG~sGsGKSTll~~l~g-----~~~~~~G~i 264 (1082)
.++++|.+|+|||||++-+.+ .+.|+.|..
T Consensus 7 Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~ 41 (171)
T d2erya1 7 RLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDS 41 (171)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSCCCSSCCTTCCEE
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCC
T ss_conf 89999999979999999997399885457664520
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Probab=86.78 E-value=0.34 Score=21.88 Aligned_cols=24 Identities=21% Similarity=0.252 Sum_probs=21.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 899983899977889998813266
Q 001411 865 SLAVVGQSGSGKSTVISLVMRFYD 888 (1082)
Q Consensus 865 ~iaIvG~SGsGKSTL~~lL~gl~~ 888 (1082)
+++++|+.|+|||||++.|.+-..
T Consensus 4 ki~ivG~~~~GKTsLi~~l~~~~~ 27 (165)
T d1ksha_ 4 RLLMLGLDNAGKTTILKKFNGEDV 27 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHTTCCC
T ss_pred EEEEECCCCCCHHHHHHHHCCCCC
T ss_conf 999999999899999999808998
|
| >d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=86.68 E-value=0.34 Score=21.89 Aligned_cols=27 Identities=22% Similarity=0.305 Sum_probs=23.9
Q ss_pred EEECCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 762895899983899977889998813
Q 001411 859 KVSAGRSLAVVGQSGSGKSTVISLVMR 885 (1082)
Q Consensus 859 ~I~~Ge~iaIvG~SGsGKSTL~~lL~g 885 (1082)
-+++|+.+-|.|++||||||++.-+.-
T Consensus 30 Gi~~G~~~li~G~pGsGKT~l~lq~~~ 56 (251)
T d1szpa2 30 GVETGSITELFGEFRTGKSQLCHTLAV 56 (251)
T ss_dssp SEESSSEEEEEESTTSSHHHHHHHHTT
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 986996999983899988999999999
|
| >d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermotoga maritima [TaxId: 2336]
Probab=86.67 E-value=0.24 Score=23.15 Aligned_cols=28 Identities=21% Similarity=0.440 Sum_probs=23.5
Q ss_pred EEEEECCCCCCHHHHHHHHHHCCCCCCC
Q ss_conf 9999849988089999999707889976
Q 001411 235 TFAFVGPSGSGKSTIISMVQRLYEPTSG 262 (1082)
Q Consensus 235 ~~~ivG~sGsGKSTll~~l~g~~~~~~G 262 (1082)
.+.+.||.|+||||+.++++..+....+
T Consensus 37 ~~L~~GPpGtGKT~lA~~la~~~~~~~~ 64 (238)
T d1in4a2 37 HVLLAGPPGLGKTTLAHIIASELQTNIH 64 (238)
T ss_dssp CEEEESSTTSSHHHHHHHHHHHHTCCEE
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCCCCC
T ss_conf 4898799997388999999850388853
|
| >d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=86.63 E-value=0.25 Score=22.94 Aligned_cols=22 Identities=27% Similarity=0.493 Sum_probs=14.3
Q ss_pred EEEECCCCCCHHHHHHHHHHCC
Q ss_conf 9998499880899999997078
Q 001411 236 FAFVGPSGSGKSTIISMVQRLY 257 (1082)
Q Consensus 236 ~~ivG~sGsGKSTll~~l~g~~ 257 (1082)
+.|.||.||||||+.+.|+..+
T Consensus 3 I~i~G~pGsGKsT~a~~La~~~ 24 (181)
T d2cdna1 3 VLLLGPPGAGKGTQAVKLAEKL 24 (181)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 9998899999799999999998
|
| >d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein Ygr205W species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=86.63 E-value=0.27 Score=22.67 Aligned_cols=23 Identities=26% Similarity=0.290 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 89998389997788999881326
Q 001411 865 SLAVVGQSGSGKSTVISLVMRFY 887 (1082)
Q Consensus 865 ~iaIvG~SGsGKSTL~~lL~gl~ 887 (1082)
.+||.|+.|||||||...|....
T Consensus 29 iIGi~G~qGSGKSTl~~~l~~~L 51 (286)
T d1odfa_ 29 FIFFSGPQGSGKSFTSIQIYNHL 51 (286)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99837998788999999999999
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=86.45 E-value=0.28 Score=22.59 Aligned_cols=23 Identities=22% Similarity=0.395 Sum_probs=20.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 89998389997788999881326
Q 001411 865 SLAVVGQSGSGKSTVISLVMRFY 887 (1082)
Q Consensus 865 ~iaIvG~SGsGKSTL~~lL~gl~ 887 (1082)
|++++|++|+|||||++.|.+-.
T Consensus 2 KI~liG~~nvGKSSLln~l~~~~ 24 (166)
T d2qtvb1 2 KLLFLGLDNAGKTTLLHMLKNDR 24 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89999999999999999995899
|
| >d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=86.43 E-value=0.37 Score=21.53 Aligned_cols=162 Identities=16% Similarity=0.150 Sum_probs=73.7
Q ss_pred CCCCCEEE-EEECCCEEEEECCCCCCHHHHHHH-HHCCCCCCCCEEEECCCCCCCCCHHHHHCCEEEECCCCCCCCCCHH
Q ss_conf 53012038-762895899983899977889998-8132669841899999507999978873332888366766642478
Q 001411 851 TIFENLNL-KVSAGRSLAVVGQSGSGKSTVISL-VMRFYDPISGTVLIDGYDIRTLNLRSLRRKIGLVQQEPALFSTTIY 928 (1082)
Q Consensus 851 ~vL~~isl-~I~~Ge~iaIvG~SGsGKSTL~~l-L~gl~~p~~G~I~idg~di~~~~~~~lr~~i~~vpQ~~~lf~gTIr 928 (1082)
+-|+++-- -+++|+.+-|.|++|+|||+++.- +..........+.+... +.+.... +
T Consensus 13 ~~LD~~l~GGi~~G~~~~I~G~~G~GKT~la~~~~~~~~~~~~~~~~~~s~---e~~~~~~------------------~ 71 (242)
T d1tf7a1 13 EGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTF---EETPQDI------------------I 71 (242)
T ss_dssp TTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEES---SSCHHHH------------------H
T ss_pred HHHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCCC---CCCHHHH------------------H
T ss_conf 779885568996983999994799999999999999999856887420126---6799999------------------9
Q ss_pred HHHCCCCCCCCHHHHHHHHHHHCHHHHHHHCCCCCCCCCCCCCCCCCHHHHH-HHHHHHHHCC--CCCEEEEECCCCCCC
Q ss_conf 8832399887999999999990088999627465444226999989924999-9999999703--998778517778989
Q 001411 929 ENIKYGNEDASEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQ-RVAIARAILK--NPSILLLDEATSALD 1005 (1082)
Q Consensus 929 eNl~~~~~~~~d~ei~~a~~~a~l~~~I~~lp~gldt~i~e~g~~LSgGQkQ-rlaLARAll~--~p~ILiLDEpTS~LD 1005 (1082)
....-.. ....+..+ .-. ...-......+.-..++..... .+.-.+..++ +|+++++|--++-.+
T Consensus 72 ~~~~~~~--~~~~~~~~---~~~-------~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~i~~~~~~~viiD~~~~l~~ 139 (242)
T d1tf7a1 72 KNARSFG--WDLAKLVD---EGK-------LFILDASPDPEGQEVVGGFDLSALIERINYAIQKYRARRVSIDSVTSVFQ 139 (242)
T ss_dssp HHHGGGT--CCHHHHHH---TTS-------EEEEECCCCSSCCSCCSSHHHHHHHHHHHHHHHHHTCSEEEEECSTTTST
T ss_pred HHHHHCC--CCHHHHHH---HCC-------HHHHHHCCCHHHHHHHCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf 9999849--98489887---143-------02444210335444430245899999999998863122200207889987
Q ss_pred H----HHHHHHHHHH-HHHC-CCCEEEEEECCCHH---------HH-CCCEEEEEE
Q ss_conf 7----9899999999-9861-89649998069225---------53-058899995
Q 001411 1006 T----ASENLIQEAL-DKLM-EGRTTIMVAHRLST---------IR-NADKIAVLQ 1045 (1082)
Q Consensus 1006 ~----~te~~I~~~L-~~~~-~~~TvI~IsHrl~~---------i~-~~DrI~vl~ 1045 (1082)
. .........+ +... .++|+++++|.... .. .+|.++.+.
T Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~ 195 (242)
T d1tf7a1 140 QYDASSVVRRELFRLVARLKQIGATTVMTTERIEEYGPIARYGVEEFVSDNVVILR 195 (242)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHHTCEEEEEEECSSSSSCSSTTSCHHHHCSEEEEEE
T ss_pred HCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCEEEECCEEEEEE
T ss_conf 60572678999999999998639716884210255422246762335362999988
|
| >d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Staphylococcus xylosus [TaxId: 1288]
Probab=86.39 E-value=0.4 Score=21.26 Aligned_cols=24 Identities=29% Similarity=0.249 Sum_probs=14.9
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHH
Q ss_conf 489899998499880899999997
Q 001411 231 DAGKTFAFVGPSGSGKSTIISMVQ 254 (1082)
Q Consensus 231 ~~G~~~~ivG~sGsGKSTll~~l~ 254 (1082)
-.|.-+.|.|+||+||||+.-.+.
T Consensus 13 ~~g~gvli~G~sg~GKS~la~~l~ 36 (169)
T d1ko7a2 13 VYGVGVLITGDSGIGKSETALELI 36 (169)
T ss_dssp ETTEEEEEEESTTSSHHHHHHHHH
T ss_pred ECCEEEEEEECCCCCHHHHHHHHH
T ss_conf 999999998089999999999999
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=86.24 E-value=0.18 Score=24.13 Aligned_cols=27 Identities=19% Similarity=0.316 Sum_probs=22.8
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 289589998389997788999881326
Q 001411 861 SAGRSLAVVGQSGSGKSTVISLVMRFY 887 (1082)
Q Consensus 861 ~~Ge~iaIvG~SGsGKSTL~~lL~gl~ 887 (1082)
++.-+++|||++|+|||||++.|.+-.
T Consensus 11 ~k~~kI~lvG~~~vGKTsLl~~l~~~~ 37 (186)
T d1f6ba_ 11 KKTGKLVFLGLDNAGKTTLLHMLKDDR 37 (186)
T ss_dssp TCCEEEEEEEETTSSHHHHHHHHSCC-
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 777789999999989899999996788
|
| >d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Transcription termination factor Rho, ATPase domain species: Escherichia coli [TaxId: 562]
Probab=86.22 E-value=0.22 Score=23.40 Aligned_cols=34 Identities=18% Similarity=0.358 Sum_probs=29.3
Q ss_pred CEEEEEECCCEEEEECCCCCCHHHHHHHHHHCCC
Q ss_conf 1038874898999984998808999999970788
Q 001411 225 NLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYE 258 (1082)
Q Consensus 225 ~is~~i~~G~~~~ivG~sGsGKSTll~~l~g~~~ 258 (1082)
|.=+.+.+|+..+|.|++|+|||||+..++.-..
T Consensus 35 D~l~PigrGQr~~I~g~~g~GKT~l~~~i~~~~~ 68 (289)
T d1xpua3 35 DLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIA 68 (289)
T ss_dssp HHHSCCBTTCEEEEEECSSSSHHHHHHHHHHHHH
T ss_pred EECCCCCCCCEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 4125645787556867999887899999999775
|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Thermus thermophilus [TaxId: 274]
Probab=86.20 E-value=0.17 Score=24.36 Aligned_cols=21 Identities=29% Similarity=0.567 Sum_probs=19.7
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999838999778899988132
Q 001411 866 LAVVGQSGSGKSTVISLVMRF 886 (1082)
Q Consensus 866 iaIvG~SGsGKSTL~~lL~gl 886 (1082)
|||+|++|+|||||++.|+|.
T Consensus 4 VaivG~~nvGKSTLin~L~~~ 24 (180)
T d1udxa2 4 VGLVGYPNAGKSSLLAAMTRA 24 (180)
T ss_dssp EEEECCGGGCHHHHHHHHCSS
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 999899999899999999689
|
| >d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Mycoplasma pneumoniae [TaxId: 2104]
Probab=86.08 E-value=0.45 Score=20.79 Aligned_cols=34 Identities=26% Similarity=0.371 Sum_probs=26.7
Q ss_pred CCCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 53012038762895899983899977889998813
Q 001411 851 TIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMR 885 (1082)
Q Consensus 851 ~vL~~isl~I~~Ge~iaIvG~SGsGKSTL~~lL~g 885 (1082)
..+|...+.+ .|.-+.|.|+||+||||++..|..
T Consensus 4 ~~~H~~~v~~-~g~gvli~G~sG~GKS~lal~l~~ 37 (177)
T d1knxa2 4 AQIHGVLLEV-FGVGVLLTGRSGIGKSECALDLIN 37 (177)
T ss_dssp EEEEEEEEEE-TTEEEEEEESSSSSHHHHHHHHHT
T ss_pred CEEEEEEEEE-CCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 3178999999-999999981899998999999998
|
| >d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: TrmE GTPase domain species: Thermotoga maritima [TaxId: 2336]
Probab=85.94 E-value=0.06 Score=28.19 Aligned_cols=23 Identities=26% Similarity=0.377 Sum_probs=18.2
Q ss_pred EEEEECCCCCCHHHHHHHHHHCC
Q ss_conf 99998499880899999997078
Q 001411 235 TFAFVGPSGSGKSTIISMVQRLY 257 (1082)
Q Consensus 235 ~~~ivG~sGsGKSTll~~l~g~~ 257 (1082)
.++++|++|+|||||++.|.|.-
T Consensus 2 kI~liG~~n~GKSSLin~l~g~~ 24 (160)
T d1xzpa2 2 RMVIVGKPNVGKSTLLNRLLNED 24 (160)
T ss_dssp EEEEECCHHHHTCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89999999999999999995899
|
| >d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=85.90 E-value=0.34 Score=21.83 Aligned_cols=26 Identities=19% Similarity=0.373 Sum_probs=22.9
Q ss_pred EEECCCEEEEECCCCCCHHHHHHHHH
Q ss_conf 87489899998499880899999997
Q 001411 229 SVDAGKTFAFVGPSGSGKSTIISMVQ 254 (1082)
Q Consensus 229 ~i~~G~~~~ivG~sGsGKSTll~~l~ 254 (1082)
=+++|+++.|.|++|||||||..-++
T Consensus 32 Glp~G~~~li~G~pGsGKT~~~lq~~ 57 (254)
T d1pzna2 32 GIETQAITEVFGEFGSGKTQLAHTLA 57 (254)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHH
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHH
T ss_conf 95588799998589898899999999
|
| >d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6, N-domain species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=85.86 E-value=0.57 Score=19.96 Aligned_cols=31 Identities=19% Similarity=0.376 Sum_probs=25.3
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHCCCCCCC
Q ss_conf 8989999849988089999999707889976
Q 001411 232 AGKTFAFVGPSGSGKSTIISMVQRLYEPTSG 262 (1082)
Q Consensus 232 ~G~~~~ivG~sGsGKSTll~~l~g~~~~~~G 262 (1082)
+...+.|.||.|+||||+++.++..+....+
T Consensus 42 ~~~~lll~GppGtGKT~l~~~l~~~l~~~~~ 72 (276)
T d1fnna2 42 HYPRATLLGRPGTGKTVTLRKLWELYKDKTT 72 (276)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHHTTSCC
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHHHHCCCC
T ss_conf 8881688898999899999999999754468
|
| >d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: di-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.83 E-value=0.62 Score=19.65 Aligned_cols=29 Identities=31% Similarity=0.516 Sum_probs=22.5
Q ss_pred EEEEECCCCCCHHHHHHHHHC-----CCCCCCCE
Q ss_conf 899983899977889998813-----26698418
Q 001411 865 SLAVVGQSGSGKSTVISLVMR-----FYDPISGT 893 (1082)
Q Consensus 865 ~iaIvG~SGsGKSTL~~lL~g-----l~~p~~G~ 893 (1082)
+++++|.+|+|||||++-+.+ -|.|+.|.
T Consensus 4 Ki~viG~~~vGKTsLi~r~~~~~f~~~~~~T~~~ 37 (171)
T d2erxa1 4 RVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVED 37 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCE
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCCCCCCCCEEE
T ss_conf 8999998997989999999709998763761331
|
| >d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein RalA species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]
Probab=85.68 E-value=0.57 Score=19.93 Aligned_cols=21 Identities=29% Similarity=0.420 Sum_probs=18.2
Q ss_pred EEEEECCCCCCHHHHHHHHHH
Q ss_conf 999984998808999999970
Q 001411 235 TFAFVGPSGSGKSTIISMVQR 255 (1082)
Q Consensus 235 ~~~ivG~sGsGKSTll~~l~g 255 (1082)
.+.++|..|+|||||++-+..
T Consensus 6 KivlvG~~~vGKTsli~~~~~ 26 (168)
T d1u8za_ 6 KVIMVGSGGVGKSALTLQFMY 26 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999899588999999972
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Probab=85.64 E-value=0.31 Score=22.23 Aligned_cols=22 Identities=27% Similarity=0.356 Sum_probs=18.5
Q ss_pred EEEEECCCCCCHHHHHHHHHHC
Q ss_conf 9999849988089999999707
Q 001411 235 TFAFVGPSGSGKSTIISMVQRL 256 (1082)
Q Consensus 235 ~~~ivG~sGsGKSTll~~l~g~ 256 (1082)
.++++|..|||||||++-+.+.
T Consensus 17 kI~vvG~~~~GKSsLi~rl~~~ 38 (177)
T d1zj6a1 17 KVIIVGLDNAGKTTILYQFSMN 38 (177)
T ss_dssp EEEEEESTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999999998989999999668
|
| >d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Meiotic recombination protein DMC1/LIM15 homolog species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.57 E-value=0.32 Score=22.04 Aligned_cols=27 Identities=11% Similarity=0.139 Sum_probs=24.2
Q ss_pred EEECCCEEEEECCCCCCHHHHHHHHHH
Q ss_conf 874898999984998808999999970
Q 001411 229 SVDAGKTFAFVGPSGSGKSTIISMVQR 255 (1082)
Q Consensus 229 ~i~~G~~~~ivG~sGsGKSTll~~l~g 255 (1082)
-+++|+++.|.|++|||||++..-++.
T Consensus 33 Gip~G~~~~i~G~~GsGKT~lalq~~~ 59 (258)
T d1v5wa_ 33 GIESMAITEAFGEFRTGKTQLSHTLCV 59 (258)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHH
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 976897999988998878899999999
|
| >d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=85.55 E-value=0.61 Score=19.69 Aligned_cols=23 Identities=26% Similarity=0.364 Sum_probs=20.6
Q ss_pred EEEEECCCCCCHHHHHHHHHHCC
Q ss_conf 99998499880899999997078
Q 001411 235 TFAFVGPSGSGKSTIISMVQRLY 257 (1082)
Q Consensus 235 ~~~ivG~sGsGKSTll~~l~g~~ 257 (1082)
.++|||...+|||||++++.+--
T Consensus 12 kiGivG~Pn~GKSTlfnalT~~~ 34 (296)
T d1ni3a1 12 KTGIVGMPNVGKSTFFRAITKSV 34 (296)
T ss_dssp EEEEEECSSSSHHHHHHHHHHST
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 79997899998999999997789
|
| >d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Escherichia coli [TaxId: 562]
Probab=85.50 E-value=0.31 Score=22.21 Aligned_cols=24 Identities=25% Similarity=0.487 Sum_probs=21.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 899983899977889998813266
Q 001411 865 SLAVVGQSGSGKSTVISLVMRFYD 888 (1082)
Q Consensus 865 ~iaIvG~SGsGKSTL~~lL~gl~~ 888 (1082)
++.|+||.||||||..+.|..-|.
T Consensus 2 ~I~i~G~pGSGKsT~~~~La~~~~ 25 (179)
T d1e4va1 2 RIILLGAPVAGKGTQAQFIMEKYG 25 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 899987999998999999999869
|
| >d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=85.49 E-value=0.37 Score=21.55 Aligned_cols=28 Identities=25% Similarity=0.342 Sum_probs=24.3
Q ss_pred EECCCEEEEECCCCCCHHHHHHHHHHCC
Q ss_conf 7489899998499880899999997078
Q 001411 230 VDAGKTFAFVGPSGSGKSTIISMVQRLY 257 (1082)
Q Consensus 230 i~~G~~~~ivG~sGsGKSTll~~l~g~~ 257 (1082)
+++|+++.|.|++|+|||+++.-++--.
T Consensus 31 l~~G~l~~i~G~~G~GKT~~~l~~a~~~ 58 (258)
T d2i1qa2 31 LESQSVTEFAGVFGSGKTQIMHQSCVNL 58 (258)
T ss_dssp EETTEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCCEEEEEEECCCCCHHHHHHHHHHHH
T ss_conf 6288599999179999899999999999
|
| >d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=85.49 E-value=0.26 Score=22.76 Aligned_cols=46 Identities=26% Similarity=0.512 Sum_probs=34.9
Q ss_pred CEEEEECCCCCCHHHHHHHHHHCCCCCCCEEEECCEECCCCCHHHHHHHCEEECCCC
Q ss_conf 899998499880899999997078899767999895078878788841135873677
Q 001411 234 KTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGLVSQEP 290 (1082)
Q Consensus 234 ~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~i~g~~~~~~~~~~~~~~i~~v~Q~~ 290 (1082)
+-+.++||+|||||-|++.|++++.. ==+..|+..+. ..||+..+.
T Consensus 50 sNILliGPTGvGKTlLAr~LAk~l~V--PFv~~daT~fT---------eaGYvG~DV 95 (443)
T d1g41a_ 50 KNILMIGPTGVGKTEIARRLAKLANA--PFIKVEATKFT---------EVGYVGKEV 95 (443)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHTTC--CEEEEEGGGGC-------------CCCCT
T ss_pred CCEEEECCCCCCHHHHHHHHHHHHCC--CEEEEECCEEE---------ECCEEECCH
T ss_conf 64799899998899999999987389--88986255114---------111110444
|
| >d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=85.37 E-value=0.34 Score=21.82 Aligned_cols=23 Identities=22% Similarity=0.349 Sum_probs=21.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 89998389997788999881326
Q 001411 865 SLAVVGQSGSGKSTVISLVMRFY 887 (1082)
Q Consensus 865 ~iaIvG~SGsGKSTL~~lL~gl~ 887 (1082)
++.|.||.||||||+.+.|..-|
T Consensus 2 ~I~i~G~pGsGKsT~a~~La~~~ 24 (181)
T d2cdna1 2 RVLLLGPPGAGKGTQAVKLAEKL 24 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 89998899999799999999998
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=85.37 E-value=0.3 Score=22.32 Aligned_cols=22 Identities=18% Similarity=0.271 Sum_probs=18.8
Q ss_pred EEEEECCCCCCHHHHHHHHHHC
Q ss_conf 9999849988089999999707
Q 001411 235 TFAFVGPSGSGKSTIISMVQRL 256 (1082)
Q Consensus 235 ~~~ivG~sGsGKSTll~~l~g~ 256 (1082)
+++++|++|+|||||++-+.+-
T Consensus 7 Ki~vvG~~~vGKTsLi~~l~~~ 28 (169)
T d3raba_ 7 KILIIGNSSVGKTSFLFRYADD 28 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999999991989999999739
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Probab=85.26 E-value=0.31 Score=22.15 Aligned_cols=22 Identities=18% Similarity=0.407 Sum_probs=18.6
Q ss_pred EEEEECCCCCCHHHHHHHHHHC
Q ss_conf 9999849988089999999707
Q 001411 235 TFAFVGPSGSGKSTIISMVQRL 256 (1082)
Q Consensus 235 ~~~ivG~sGsGKSTll~~l~g~ 256 (1082)
.++++|+.|+|||||++-+.+.
T Consensus 18 kI~vvG~~~vGKSsLi~~l~~~ 39 (176)
T d1fzqa_ 18 RILLLGLDNAGKTTLLKQLASE 39 (176)
T ss_dssp EEEEEESTTSSHHHHHHHHCCS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999999998999999999648
|
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Probab=85.13 E-value=0.37 Score=21.53 Aligned_cols=23 Identities=26% Similarity=0.379 Sum_probs=20.3
Q ss_pred CEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 58999838999778899988132
Q 001411 864 RSLAVVGQSGSGKSTVISLVMRF 886 (1082)
Q Consensus 864 e~iaIvG~SGsGKSTL~~lL~gl 886 (1082)
..|+|+|+.|+|||||++.|.+-
T Consensus 1 k~V~ivG~~~~GKTsLl~~l~~~ 23 (207)
T d2fh5b1 1 RAVLFVGLCDSGKTLLFVRLLTG 23 (207)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHHCC
T ss_conf 98999999998989999999809
|
| >d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Escherichia coli [TaxId: 562]
Probab=85.08 E-value=0.33 Score=21.93 Aligned_cols=42 Identities=21% Similarity=0.307 Sum_probs=32.0
Q ss_pred EEEECCCEEEEECCCCCCHHHHHHHHHHCCCCCCC-EEEECCE
Q ss_conf 88748989999849988089999999707889976-7999895
Q 001411 228 FSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSG-KILLDGH 269 (1082)
Q Consensus 228 ~~i~~G~~~~ivG~sGsGKSTll~~l~g~~~~~~G-~i~i~g~ 269 (1082)
=-+++|.++-+.||+||||||++..++.......| -+++|..
T Consensus 49 GGi~~g~itei~G~~gsGKTtl~l~~~~~~q~~g~~~vyidtE 91 (263)
T d1u94a1 49 GGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAE 91 (263)
T ss_dssp SSEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred CCCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEECCC
T ss_conf 9966735899805777478999999999987089879998654
|
| >d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Archaeal ATPase SSO1545 species: Sulfolobus solfataricus [TaxId: 2287]
Probab=85.02 E-value=0.39 Score=21.31 Aligned_cols=27 Identities=22% Similarity=0.177 Sum_probs=22.8
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHHCC
Q ss_conf 489899998499880899999997078
Q 001411 231 DAGKTFAFVGPSGSGKSTIISMVQRLY 257 (1082)
Q Consensus 231 ~~G~~~~ivG~sGsGKSTll~~l~g~~ 257 (1082)
..+..+.|.||.|+|||||++-++...
T Consensus 27 ~~~~~i~i~G~~G~GKTsLl~~~~~~~ 53 (283)
T d2fnaa2 27 LRAPITLVLGLRRTGKSSIIKIGINEL 53 (283)
T ss_dssp TCSSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHC
T ss_conf 059879998699982999999999977
|
| >d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-like estrogen-regulated growth inhibitor, RERG species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.01 E-value=0.64 Score=19.53 Aligned_cols=21 Identities=29% Similarity=0.510 Sum_probs=18.6
Q ss_pred EEEEECCCCCCHHHHHHHHHH
Q ss_conf 999984998808999999970
Q 001411 235 TFAFVGPSGSGKSTIISMVQR 255 (1082)
Q Consensus 235 ~~~ivG~sGsGKSTll~~l~g 255 (1082)
.++++|++|+|||||++-+.+
T Consensus 4 Ki~lvG~~~vGKTsli~r~~~ 24 (168)
T d2atva1 4 KLAIFGRAGVGKSALVVRFLT 24 (168)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999899789999999973
|
| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermus aquaticus [TaxId: 271]
Probab=84.99 E-value=0.38 Score=21.43 Aligned_cols=41 Identities=34% Similarity=0.560 Sum_probs=27.0
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCC
Q ss_conf 28958999838999778899988132669841899999507
Q 001411 861 SAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDI 901 (1082)
Q Consensus 861 ~~Ge~iaIvG~SGsGKSTL~~lL~gl~~p~~G~I~idg~di 901 (1082)
+++..+++|||+|+||||.+-=|...+.-..-++.+=..|.
T Consensus 4 ~~~~vi~lvGptGvGKTTTiaKLA~~~~~~g~kV~lit~Dt 44 (207)
T d1okkd2 4 PKGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDT 44 (207)
T ss_dssp CSSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCC
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEECC
T ss_conf 99779999899999889999999999997799079998136
|
| >d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]
Probab=84.92 E-value=0.31 Score=22.18 Aligned_cols=23 Identities=35% Similarity=0.611 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHHHCC
Q ss_conf 99998499880899999997078
Q 001411 235 TFAFVGPSGSGKSTIISMVQRLY 257 (1082)
Q Consensus 235 ~~~ivG~sGsGKSTll~~l~g~~ 257 (1082)
.++|+||.||||||+.+.|+-.+
T Consensus 8 rIiliG~PGSGKtT~a~~La~~~ 30 (189)
T d2ak3a1 8 RAAIMGAPGSGKGTVSSRITKHF 30 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHB
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 69998899998799999999997
|
| >d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein GEM species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.91 E-value=0.52 Score=20.29 Aligned_cols=24 Identities=25% Similarity=0.530 Sum_probs=20.3
Q ss_pred EEEEECCCCCCHHHHHHHHHHCCC
Q ss_conf 999984998808999999970788
Q 001411 235 TFAFVGPSGSGKSTIISMVQRLYE 258 (1082)
Q Consensus 235 ~~~ivG~sGsGKSTll~~l~g~~~ 258 (1082)
++.++|..|+|||||++.+.+...
T Consensus 5 Kv~lvG~~~vGKTsLi~~~~~~~~ 28 (172)
T d2g3ya1 5 RVVLIGEQGVGKSTLANIFAGVHD 28 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCCC
T ss_pred EEEEECCCCCCHHHHHHHHHHCCC
T ss_conf 999999899299999999972867
|
| >d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor SelB, N-terminal domain species: Methanococcus maripaludis [TaxId: 39152]
Probab=84.74 E-value=0.33 Score=21.94 Aligned_cols=23 Identities=22% Similarity=0.445 Sum_probs=20.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 89998389997788999881326
Q 001411 865 SLAVVGQSGSGKSTVISLVMRFY 887 (1082)
Q Consensus 865 ~iaIvG~SGsGKSTL~~lL~gl~ 887 (1082)
.|||+|+.++|||||++.|.+..
T Consensus 7 nIaiiG~~naGKSTL~n~L~~~~ 29 (179)
T d1wb1a4 7 NLGIFGHIDHGKTTLSKVLTEIA 29 (179)
T ss_dssp EEEEEECTTSSHHHHHHHHHTTC
T ss_pred EEEEEECCCCCHHHHHHHHHHHC
T ss_conf 99999077870999999999743
|
| >d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor IF2/eIF5b, N-terminal (G) domain species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=84.71 E-value=0.33 Score=21.91 Aligned_cols=22 Identities=18% Similarity=0.410 Sum_probs=20.2
Q ss_pred EEEEECCCCCCHHHHHHHHHHC
Q ss_conf 9999849988089999999707
Q 001411 235 TFAFVGPSGSGKSTIISMVQRL 256 (1082)
Q Consensus 235 ~~~ivG~sGsGKSTll~~l~g~ 256 (1082)
+++|+|+..+|||||++.|.+.
T Consensus 7 ~IaIiGh~d~GKSTL~~~L~~~ 28 (227)
T d1g7sa4 7 IVSVLGHVDHGKTTLLDHIRGS 28 (227)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHHHH
T ss_conf 7999969985499999999823
|
| >d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab9a species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.60 E-value=0.57 Score=19.93 Aligned_cols=21 Identities=24% Similarity=0.482 Sum_probs=17.8
Q ss_pred EEEEECCCCCCHHHHHHHHHH
Q ss_conf 999984998808999999970
Q 001411 235 TFAFVGPSGSGKSTIISMVQR 255 (1082)
Q Consensus 235 ~~~ivG~sGsGKSTll~~l~g 255 (1082)
.++++|++|+|||||++-+..
T Consensus 8 KI~vvG~~~vGKSSli~~~~~ 28 (174)
T d1wmsa_ 8 KVILLGDGGVGKSSLMNRYVT 28 (174)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999799999999984
|
| >d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Metallochaperone MeaB species: Methylobacterium extorquens [TaxId: 408]
Probab=84.52 E-value=0.53 Score=20.22 Aligned_cols=26 Identities=31% Similarity=0.415 Sum_probs=21.8
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHCC
Q ss_conf 89899998499880899999997078
Q 001411 232 AGKTFAFVGPSGSGKSTIISMVQRLY 257 (1082)
Q Consensus 232 ~G~~~~ivG~sGsGKSTll~~l~g~~ 257 (1082)
..-.++|+|+-|+|||||+..+...+
T Consensus 50 ~~~~igitG~pGaGKSTli~~l~~~~ 75 (323)
T d2qm8a1 50 RAIRVGITGVPGVGKSTTIDALGSLL 75 (323)
T ss_dssp CSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 81598611799888999999999987
|
| >d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxynucleoside monophosphate kinase species: Bacteriophage T4 [TaxId: 10665]
Probab=84.43 E-value=0.35 Score=21.71 Aligned_cols=30 Identities=23% Similarity=0.333 Sum_probs=21.8
Q ss_pred CEEEEECCCCCCHHHHHHHHHHCCCCCCCEEEEC
Q ss_conf 8999984998808999999970788997679998
Q 001411 234 KTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLD 267 (1082)
Q Consensus 234 ~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~i~ 267 (1082)
.+++|+|+-||||||..+.|...+ |-..++
T Consensus 2 ~iIgiTG~igSGKsTva~~l~e~~----g~~~i~ 31 (241)
T d1deka_ 2 KLIFLSGVKRSGKDTTADFIMSNY----SAVKYQ 31 (241)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHS----CEEECC
T ss_pred EEEEEECCCCCCHHHHHHHHHHHC----CCEEEC
T ss_conf 899997999988999999999868----985980
|
| >d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Escherichia coli [TaxId: 562]
Probab=84.41 E-value=0.31 Score=22.17 Aligned_cols=31 Identities=32% Similarity=0.439 Sum_probs=20.1
Q ss_pred EEEECCCEEEEECCCCCCHHHHHHHHHHCCC
Q ss_conf 8874898999984998808999999970788
Q 001411 228 FSVDAGKTFAFVGPSGSGKSTIISMVQRLYE 258 (1082)
Q Consensus 228 ~~i~~G~~~~ivG~sGsGKSTll~~l~g~~~ 258 (1082)
++-.+-.+++++||+|+||||.+-=|+..+.
T Consensus 4 ~~~~~p~vi~lvGptGvGKTTTiAKLA~~~~ 34 (211)
T d2qy9a2 4 VEGKAPFVILMVGVNGVGKTTTIGKLARQFE 34 (211)
T ss_dssp CCSCTTEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCCCCCEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 7899997999989999998999999999999
|
| >d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL8A [TaxId: 9606]
Probab=84.38 E-value=0.35 Score=21.71 Aligned_cols=22 Identities=27% Similarity=0.445 Sum_probs=18.4
Q ss_pred EEEEECCCCCCHHHHHHHHHHC
Q ss_conf 9999849988089999999707
Q 001411 235 TFAFVGPSGSGKSTIISMVQRL 256 (1082)
Q Consensus 235 ~~~ivG~sGsGKSTll~~l~g~ 256 (1082)
.++++|++|+|||||++-+.+-
T Consensus 4 ki~i~G~~~~GKTsLl~~l~~~ 25 (164)
T d1zd9a1 4 ELTLVGLQYSGKTTFVNVIASG 25 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999999998989999999719
|
| >d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.31 E-value=0.71 Score=19.13 Aligned_cols=29 Identities=38% Similarity=0.566 Sum_probs=22.1
Q ss_pred EEEEECCCCCCHHHHHHHHHC-----CCCCCCCE
Q ss_conf 899983899977889998813-----26698418
Q 001411 865 SLAVVGQSGSGKSTVISLVMR-----FYDPISGT 893 (1082)
Q Consensus 865 ~iaIvG~SGsGKSTL~~lL~g-----l~~p~~G~ 893 (1082)
++.++|.+|+|||||++-+.. -|.|+.|.
T Consensus 7 Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~ 40 (171)
T d2erya1 7 RLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIED 40 (171)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSCCCSSCCTTCCE
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCC
T ss_conf 8999999997999999999739988545766452
|
| >d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=84.27 E-value=0.72 Score=19.12 Aligned_cols=43 Identities=19% Similarity=0.187 Sum_probs=31.5
Q ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCC
Q ss_conf 97657717545889897999999999770997399980494300
Q 001411 362 PKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTV 405 (1082)
Q Consensus 362 ~~illlDEpts~lD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~ 405 (1082)
.+++++||.-. |+......+.+.+.........|++|++.+-+
T Consensus 116 ~kviiIde~d~-l~~~~q~~Llk~lE~~~~~~~~il~tn~~~~i 158 (239)
T d1njfa_ 116 FKVYLIDEVHM-LSRHSFNALLKTLEEPPEHVKFLLATTDPQKL 158 (239)
T ss_dssp SEEEEEETGGG-SCHHHHHHHHHHHHSCCTTEEEEEEESCGGGS
T ss_pred CEEEEEECCCC-CCHHHHHHHHHHHHCCCCCEEEEEECCCCCCC
T ss_conf 87999978110-89999999999985689886999973885636
|
| >d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6, N-domain species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=84.25 E-value=0.51 Score=20.33 Aligned_cols=30 Identities=17% Similarity=0.395 Sum_probs=24.5
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCCCCC
Q ss_conf 958999838999778899988132669841
Q 001411 863 GRSLAVVGQSGSGKSTVISLVMRFYDPISG 892 (1082)
Q Consensus 863 Ge~iaIvG~SGsGKSTL~~lL~gl~~p~~G 892 (1082)
...+.|.||.|+||||+++.+...+....+
T Consensus 43 ~~~lll~GppGtGKT~l~~~l~~~l~~~~~ 72 (276)
T d1fnna2 43 YPRATLLGRPGTGKTVTLRKLWELYKDKTT 72 (276)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTTSCC
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHHHCCCC
T ss_conf 881688898999899999999999754468
|
| >d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=84.19 E-value=0.4 Score=21.25 Aligned_cols=34 Identities=24% Similarity=0.236 Sum_probs=24.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCC
Q ss_conf 899983899977889998813266984189999950
Q 001411 865 SLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYD 900 (1082)
Q Consensus 865 ~iaIvG~SGsGKSTL~~lL~gl~~p~~G~I~idg~d 900 (1082)
.+-|.||+|+||||+++++++-+... -+.++..+
T Consensus 54 ~lll~GPpG~GKTt~a~~la~~~~~~--~~~~~~~~ 87 (253)
T d1sxja2 54 AAMLYGPPGIGKTTAAHLVAQELGYD--ILEQNASD 87 (253)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTTCE--EEEECTTS
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHH--HHCCCCCC
T ss_conf 49998799998889999999998751--20134432
|
| >d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-22a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=84.17 E-value=0.72 Score=19.08 Aligned_cols=21 Identities=29% Similarity=0.501 Sum_probs=18.2
Q ss_pred EEEEECCCCCCHHHHHHHHHH
Q ss_conf 999984998808999999970
Q 001411 235 TFAFVGPSGSGKSTIISMVQR 255 (1082)
Q Consensus 235 ~~~ivG~sGsGKSTll~~l~g 255 (1082)
.++++|.+|+|||||++-+..
T Consensus 6 Ki~lvG~~~vGKTsli~rl~~ 26 (167)
T d1z0ja1 6 KVCLLGDTGVGKSSIMWRFVE 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 899999899499999999973
|
| >d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab27b species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.17 E-value=0.4 Score=21.24 Aligned_cols=22 Identities=27% Similarity=0.360 Sum_probs=18.9
Q ss_pred EEEEECCCCCCHHHHHHHHHHC
Q ss_conf 9999849988089999999707
Q 001411 235 TFAFVGPSGSGKSTIISMVQRL 256 (1082)
Q Consensus 235 ~~~ivG~sGsGKSTll~~l~g~ 256 (1082)
.++++|+.|+|||||++-+.+-
T Consensus 7 Ki~ivG~~~vGKTsLi~~l~~~ 28 (186)
T d2f7sa1 7 KLLALGDSGVGKTTFLYRYTDN 28 (186)
T ss_dssp EEEEESCTTSSHHHHHHHHHCS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999999991989999999619
|
| >d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein M-Ras (XRas) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=84.11 E-value=0.73 Score=19.06 Aligned_cols=21 Identities=29% Similarity=0.455 Sum_probs=17.9
Q ss_pred EEEEECCCCCCHHHHHHHHHH
Q ss_conf 999984998808999999970
Q 001411 235 TFAFVGPSGSGKSTIISMVQR 255 (1082)
Q Consensus 235 ~~~ivG~sGsGKSTll~~l~g 255 (1082)
.+.++|.+|+|||||++-+.+
T Consensus 6 Ki~lvG~~~vGKTsll~~~~~ 26 (169)
T d1x1ra1 6 KLVVVGDGGVGKSALTIQFFQ 26 (169)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999899598999999970
|
| >d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermotoga maritima [TaxId: 2336]
Probab=84.03 E-value=0.43 Score=21.02 Aligned_cols=35 Identities=17% Similarity=0.276 Sum_probs=23.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCC
Q ss_conf 8999838999778899988132669841899999507
Q 001411 865 SLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDI 901 (1082)
Q Consensus 865 ~iaIvG~SGsGKSTL~~lL~gl~~p~~G~I~idg~di 901 (1082)
.+-+.||.|+||||+++++..-+.... +.+++.+.
T Consensus 37 ~~L~~GPpGtGKT~lA~~la~~~~~~~--~~~~~~~~ 71 (238)
T d1in4a2 37 HVLLAGPPGLGKTTLAHIIASELQTNI--HVTSGPVL 71 (238)
T ss_dssp CEEEESSTTSSHHHHHHHHHHHHTCCE--EEEETTTC
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCCCC--CCCCCCCC
T ss_conf 489879999738899999985038885--33257442
|
| >d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Centaurin gamma 1, G domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.03 E-value=0.7 Score=19.20 Aligned_cols=22 Identities=27% Similarity=0.376 Sum_probs=19.0
Q ss_pred EEEEECCCCCCHHHHHHHHHHC
Q ss_conf 9999849988089999999707
Q 001411 235 TFAFVGPSGSGKSTIISMVQRL 256 (1082)
Q Consensus 235 ~~~ivG~sGsGKSTll~~l~g~ 256 (1082)
.++++|.+|+|||||++-+.+.
T Consensus 7 ki~vlG~~~vGKTsLi~~~~~~ 28 (175)
T d2bmja1 7 RLGVLGDARSGKSSLIHRFLTG 28 (175)
T ss_dssp EEEEECCTTTTHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999998997899999999719
|
| >d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Meiotic recombination protein DMC1/LIM15 homolog species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.00 E-value=0.43 Score=20.95 Aligned_cols=27 Identities=11% Similarity=0.138 Sum_probs=24.5
Q ss_pred EEECCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 762895899983899977889998813
Q 001411 859 KVSAGRSLAVVGQSGSGKSTVISLVMR 885 (1082)
Q Consensus 859 ~I~~Ge~iaIvG~SGsGKSTL~~lL~g 885 (1082)
-+++|..+-|.|++|+|||+++.-++.
T Consensus 33 Gip~G~~~~i~G~~GsGKT~lalq~~~ 59 (258)
T d1v5wa_ 33 GIESMAITEAFGEFRTGKTQLSHTLCV 59 (258)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHH
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 976897999988998878899999999
|
| >d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Archaeal ATPase SSO1545 species: Sulfolobus solfataricus [TaxId: 2287]
Probab=83.99 E-value=0.41 Score=21.12 Aligned_cols=26 Identities=23% Similarity=0.313 Sum_probs=21.7
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 89589998389997788999881326
Q 001411 862 AGRSLAVVGQSGSGKSTVISLVMRFY 887 (1082)
Q Consensus 862 ~Ge~iaIvG~SGsGKSTL~~lL~gl~ 887 (1082)
.+..+.|.|++|+|||||++-++.-.
T Consensus 28 ~~~~i~i~G~~G~GKTsLl~~~~~~~ 53 (283)
T d2fnaa2 28 RAPITLVLGLRRTGKSSIIKIGINEL 53 (283)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHC
T ss_conf 59879998699982999999999977
|
| >d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab7 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=83.95 E-value=0.37 Score=21.50 Aligned_cols=21 Identities=24% Similarity=0.502 Sum_probs=18.5
Q ss_pred EEEEECCCCCCHHHHHHHHHH
Q ss_conf 999984998808999999970
Q 001411 235 TFAFVGPSGSGKSTIISMVQR 255 (1082)
Q Consensus 235 ~~~ivG~sGsGKSTll~~l~g 255 (1082)
.++++|.+|+|||||++-+.+
T Consensus 4 Kv~vvG~~~vGKSSLi~~l~~ 24 (184)
T d1vg8a_ 4 KVIILGDSGVGKTSLMNQYVN 24 (184)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999198999999971
|
| >d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rad species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.94 E-value=0.41 Score=21.13 Aligned_cols=24 Identities=21% Similarity=0.452 Sum_probs=20.2
Q ss_pred EEEEECCCCCCHHHHHHHHHHCCC
Q ss_conf 999984998808999999970788
Q 001411 235 TFAFVGPSGSGKSTIISMVQRLYE 258 (1082)
Q Consensus 235 ~~~ivG~sGsGKSTll~~l~g~~~ 258 (1082)
.++++|.+|+|||||++.+.+...
T Consensus 3 Ki~lvG~~~vGKTsLi~~~~~~~~ 26 (168)
T d2gjsa1 3 KVLLLGAPGVGKSALARIFGGVED 26 (168)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC--
T ss_pred EEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 999989899399999999818856
|
| >d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: cH-p21 Ras protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.92 E-value=0.36 Score=21.60 Aligned_cols=22 Identities=27% Similarity=0.440 Sum_probs=18.8
Q ss_pred EEEEECCCCCCHHHHHHHHHHC
Q ss_conf 9999849988089999999707
Q 001411 235 TFAFVGPSGSGKSTIISMVQRL 256 (1082)
Q Consensus 235 ~~~ivG~sGsGKSTll~~l~g~ 256 (1082)
.++++|++|+|||||++-+.+-
T Consensus 5 Ki~viG~~~vGKTsli~~l~~~ 26 (166)
T d1ctqa_ 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999997998999999999809
|
| >d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=83.91 E-value=0.39 Score=21.31 Aligned_cols=24 Identities=33% Similarity=0.512 Sum_probs=21.3
Q ss_pred EEEEECCCCCCHHHHHHHHHHCCC
Q ss_conf 999984998808999999970788
Q 001411 235 TFAFVGPSGSGKSTIISMVQRLYE 258 (1082)
Q Consensus 235 ~~~ivG~sGsGKSTll~~l~g~~~ 258 (1082)
.+.+.||+|+||||++++++..+.
T Consensus 47 ~lll~Gp~G~GKTtla~~iak~l~ 70 (231)
T d1iqpa2 47 HLLFAGPPGVGKTTAALALARELF 70 (231)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 699978999748799999999987
|
| >d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.89 E-value=0.74 Score=19.00 Aligned_cols=21 Identities=24% Similarity=0.531 Sum_probs=18.6
Q ss_pred EEEEECCCCCCHHHHHHHHHH
Q ss_conf 999984998808999999970
Q 001411 235 TFAFVGPSGSGKSTIISMVQR 255 (1082)
Q Consensus 235 ~~~ivG~sGsGKSTll~~l~g 255 (1082)
.++++|..|+|||||++-+.+
T Consensus 2 Kv~vvG~~~vGKTsLi~r~~~ 22 (164)
T d1yzqa1 2 KLVFLGEQSVGKTSLITRFMY 22 (164)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 899999899098999999984
|
| >d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Thermus thermophilus [TaxId: 274]
Probab=83.86 E-value=0.47 Score=20.64 Aligned_cols=24 Identities=25% Similarity=0.383 Sum_probs=20.3
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 589998389997788999881326
Q 001411 864 RSLAVVGQSGSGKSTVISLVMRFY 887 (1082)
Q Consensus 864 e~iaIvG~SGsGKSTL~~lL~gl~ 887 (1082)
..+-+.||.|+|||++++.+.+.+
T Consensus 43 ~giLl~GppGtGKT~la~aia~~~ 66 (247)
T d1ixza_ 43 KGVLLVGPPGVGKTHLARAVAGEA 66 (247)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHHC
T ss_conf 648876689888359999999873
|
| >d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=83.84 E-value=0.43 Score=20.99 Aligned_cols=24 Identities=25% Similarity=0.505 Sum_probs=20.6
Q ss_pred EEEEECCCCCCHHHHHHHHHHCCC
Q ss_conf 999984998808999999970788
Q 001411 235 TFAFVGPSGSGKSTIISMVQRLYE 258 (1082)
Q Consensus 235 ~~~ivG~sGsGKSTll~~l~g~~~ 258 (1082)
+++|-|.-||||||+++.|...+.
T Consensus 2 lI~ieG~dGsGKST~~~~L~~~l~ 25 (208)
T d1gsia_ 2 LIAIEGVDGAGKRTLVEKLSGAFR 25 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 899989987899999999999998
|
| >d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab11b species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.81 E-value=0.39 Score=21.38 Aligned_cols=22 Identities=36% Similarity=0.599 Sum_probs=18.9
Q ss_pred EEEEECCCCCCHHHHHHHHHHC
Q ss_conf 9999849988089999999707
Q 001411 235 TFAFVGPSGSGKSTIISMVQRL 256 (1082)
Q Consensus 235 ~~~ivG~sGsGKSTll~~l~g~ 256 (1082)
.++++|+.|+|||||++-+.+-
T Consensus 6 Ki~vvG~~~vGKTsLi~~~~~~ 27 (175)
T d2f9la1 6 KVVLIGDSGVGKSNLLSRFTRN 27 (175)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999990989999999829
|
| >d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab23 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=83.78 E-value=0.39 Score=21.37 Aligned_cols=21 Identities=29% Similarity=0.455 Sum_probs=17.8
Q ss_pred EEEEECCCCCCHHHHHHHHHH
Q ss_conf 999984998808999999970
Q 001411 235 TFAFVGPSGSGKSTIISMVQR 255 (1082)
Q Consensus 235 ~~~ivG~sGsGKSTll~~l~g 255 (1082)
.++++|++|+|||||++-+.+
T Consensus 4 Kv~liG~~~vGKSsLi~rl~~ 24 (164)
T d1z2aa1 4 KMVVVGNGAVGKSSMIQRYCK 24 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999899598999999982
|
| >d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=83.67 E-value=0.51 Score=20.33 Aligned_cols=26 Identities=23% Similarity=0.358 Sum_probs=23.0
Q ss_pred EEECCCEEEEECCCCCCHHHHHHHHH
Q ss_conf 76289589998389997788999881
Q 001411 859 KVSAGRSLAVVGQSGSGKSTVISLVM 884 (1082)
Q Consensus 859 ~I~~Ge~iaIvG~SGsGKSTL~~lL~ 884 (1082)
-+++|+.+-|.|++||||||+..-++
T Consensus 32 Glp~G~~~li~G~pGsGKT~~~lq~~ 57 (254)
T d1pzna2 32 GIETQAITEVFGEFGSGKTQLAHTLA 57 (254)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHH
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHH
T ss_conf 95588799998589898899999999
|
| >d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]
Probab=83.59 E-value=0.46 Score=20.76 Aligned_cols=112 Identities=18% Similarity=0.208 Sum_probs=54.9
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHHHHCCEEEECCCCCCCCCCHHHHHCCCCCCCCHH
Q ss_conf 89589998389997788999881326698418999995079999788733328883667666424788832399887999
Q 001411 862 AGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRKIGLVQQEPALFSTTIYENIKYGNEDASEI 941 (1082)
Q Consensus 862 ~Ge~iaIvG~SGsGKSTL~~lL~gl~~p~~G~I~idg~di~~~~~~~lr~~i~~vpQ~~~lf~gTIreNl~~~~~~~~d~ 941 (1082)
+.-++.|+|+.||||||+.+.|+.-|. -..|+-- +-+|+.+ ++...+...+.+.+..+. ...++
T Consensus 5 r~mrIiliG~PGSGKtT~a~~La~~~g----~~~is~g-------dllr~~~----~~~~~~~~~~~~~~~~~~-~v~~~ 68 (189)
T d2ak3a1 5 RLLRAAIMGAPGSGKGTVSSRITKHFE----LKHLSSG-------DLLRDNM----LRGTEIGVLAKTFIDQGK-LIPDD 68 (189)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHBC----CEEEEHH-------HHHHHHH----HTTCHHHHHHHHHHHTTC-CCCHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHC----CEEECHH-------HHHHHHH----HHHHHHHHHHHHHHHHHH-HCCCH
T ss_conf 621699988999987999999999979----8687189-------9999998----740156689998763664-13303
Q ss_pred HHHHHHHHHCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECC
Q ss_conf 99999999008899962746544422699998992499999999997039987785177
Q 001411 942 ELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEA 1000 (1082)
Q Consensus 942 ei~~a~~~a~l~~~I~~lp~gldt~i~e~g~~LSgGQkQrlaLARAll~~p~ILiLDEp 1000 (1082)
.+....+.. + ... ..-. .+-+ | +..-..|.-.+.+ .+.-..++.||-|
T Consensus 69 ~~~~l~~~~-~----~~~-~~~~-~ild-G--fPr~~~q~~~l~~-~~~~~~vi~L~v~ 116 (189)
T d2ak3a1 69 VMTRLVLHE-L----KNL-TQYN-WLLD-G--FPRTLPQAEALDR-AYQIDTVINLNVP 116 (189)
T ss_dssp HHHHHHHHH-H----HHH-TTSC-EEEE-S--CCCSHHHHHHHHT-TCCCCEEEEEECC
T ss_pred HHHHHHHHH-H----HHH-HHCC-CCCC-C--CCCHHHHHHHHHH-CCCCEEEEEEECC
T ss_conf 445445554-4----212-1058-4244-5--2100067887631-5753299997244
|
| >d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=83.45 E-value=0.44 Score=20.91 Aligned_cols=24 Identities=25% Similarity=0.482 Sum_probs=21.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 899983899977889998813266
Q 001411 865 SLAVVGQSGSGKSTVISLVMRFYD 888 (1082)
Q Consensus 865 ~iaIvG~SGsGKSTL~~lL~gl~~ 888 (1082)
.|+|-|.-||||||+++.|...+.
T Consensus 2 lI~ieG~dGsGKST~~~~L~~~l~ 25 (208)
T d1gsia_ 2 LIAIEGVDGAGKRTLVEKLSGAFR 25 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 899989987899999999999998
|
| >d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein PH0525 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=83.41 E-value=0.43 Score=20.97 Aligned_cols=22 Identities=32% Similarity=0.431 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHHHC
Q ss_conf 9999849988089999999707
Q 001411 235 TFAFVGPSGSGKSTIISMVQRL 256 (1082)
Q Consensus 235 ~~~ivG~sGsGKSTll~~l~g~ 256 (1082)
.+||+|...+|||||+++|.|-
T Consensus 2 ~v~lvG~pn~GKStlfn~lt~~ 23 (319)
T d1wxqa1 2 EIGVVGKPNVGKSTFFSAATLV 23 (319)
T ss_dssp EEEEEECTTSSHHHHHHHHHC-
T ss_pred CEEEECCCCCCHHHHHHHHHCC
T ss_conf 1768899999899999999788
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Probab=83.37 E-value=0.45 Score=20.84 Aligned_cols=26 Identities=19% Similarity=0.311 Sum_probs=22.1
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 28958999838999778899988132
Q 001411 861 SAGRSLAVVGQSGSGKSTVISLVMRF 886 (1082)
Q Consensus 861 ~~Ge~iaIvG~SGsGKSTL~~lL~gl 886 (1082)
++.=++.++|..|+|||||++-|.+-
T Consensus 13 ~k~~kI~vvG~~~~GKSsLi~rl~~~ 38 (177)
T d1zj6a1 13 HQEHKVIIVGLDNAGKTTILYQFSMN 38 (177)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHCC
T ss_conf 98579999999998989999999668
|
| >d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=83.35 E-value=0.41 Score=21.18 Aligned_cols=13 Identities=23% Similarity=0.488 Sum_probs=6.4
Q ss_pred CCCCCEEEEECCC
Q ss_conf 5699765771754
Q 001411 359 LRNPKILLLDEAT 371 (1082)
Q Consensus 359 ~~~~~illlDEpt 371 (1082)
..+..+..+||--
T Consensus 247 v~~~~~~~~dei~ 259 (443)
T d1g41a_ 247 VEQNGIVFIDEID 259 (443)
T ss_dssp HHHHCEEEEETGG
T ss_pred HHCCCCCCCCHHH
T ss_conf 7426755542233
|
| >d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Transcription termination factor Rho, ATPase domain species: Escherichia coli [TaxId: 562]
Probab=83.34 E-value=0.41 Score=21.17 Aligned_cols=36 Identities=14% Similarity=0.310 Sum_probs=29.9
Q ss_pred CCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 3012038762895899983899977889998813266
Q 001411 852 IFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYD 888 (1082)
Q Consensus 852 vL~~isl~I~~Ge~iaIvG~SGsGKSTL~~lL~gl~~ 888 (1082)
++ |.=+.|-+|++.+|+|++|+|||||+..+.+-..
T Consensus 33 ~I-D~l~PigrGQr~~I~g~~g~GKT~l~~~i~~~~~ 68 (289)
T d1xpua3 33 VL-DLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIA 68 (289)
T ss_dssp HH-HHHSCCBTTCEEEEEECSSSSHHHHHHHHHHHHH
T ss_pred EE-EECCCCCCCCEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 56-4125645787556867999887899999999775
|
| >d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein ypt7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=83.27 E-value=0.68 Score=19.33 Aligned_cols=21 Identities=24% Similarity=0.585 Sum_probs=19.0
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 899983899977889998813
Q 001411 865 SLAVVGQSGSGKSTVISLVMR 885 (1082)
Q Consensus 865 ~iaIvG~SGsGKSTL~~lL~g 885 (1082)
+++++|++|+|||||++-+.+
T Consensus 4 Ki~~vG~~~vGKSsLi~~~~~ 24 (175)
T d1ky3a_ 4 KVIILGDSGVGKTSLMHRYVN 24 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHC
T ss_conf 999999999698999999970
|
| >d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus, EF-G-2 [TaxId: 274]
Probab=83.16 E-value=0.54 Score=20.17 Aligned_cols=176 Identities=18% Similarity=0.187 Sum_probs=88.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC--CCCCEEEECCCCCCCCCHHHHHCCEEEECCCCCCCCCCHHHHH--CCCCCCCCH
Q ss_conf 899983899977889998813266--9841899999507999978873332888366766642478883--239988799
Q 001411 865 SLAVVGQSGSGKSTVISLVMRFYD--PISGTVLIDGYDIRTLNLRSLRRKIGLVQQEPALFSTTIYENI--KYGNEDASE 940 (1082)
Q Consensus 865 ~iaIvG~SGsGKSTL~~lL~gl~~--p~~G~I~idg~di~~~~~~~lr~~i~~vpQ~~~lf~gTIreNl--~~~~~~~~d 940 (1082)
.+||+|+.|+|||||+..|+.... ...|++. +|..+.+...++..+.+++-+.-..+--...+-|+ ++|..+...
T Consensus 4 Nv~iiGh~~~GKTtL~e~ll~~~g~~~~~g~v~-~g~~~~D~~~~E~~r~~ti~~~~~~~~~~~~~~n~iDtPGh~dF~~ 82 (267)
T d2dy1a2 4 TVALVGHAGSGKTTLTEALLYKTGAKERRGRVE-EGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYGDFVG 82 (267)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGG-GTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSGGGHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCHHHCCCH-HCCCCCCCHHHHHHHCCEEEEECCCCCCCCCCEEEECCCCHHHHHH
T ss_conf 999994889809999999999709755306622-2211356269888738768751022223432106880681554335
Q ss_pred HHHHHHHHHHCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEE---ECCCCCCCHHHHHHHHHHHH
Q ss_conf 999999999008899962746544422699998992499999999997039987785---17778989798999999999
Q 001411 941 IELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLL---DEATSALDTASENLIQEALD 1017 (1082)
Q Consensus 941 ~ei~~a~~~a~l~~~I~~lp~gldt~i~e~g~~LSgGQkQrlaLARAll~~p~ILiL---DEpTS~LD~~te~~I~~~L~ 1017 (1082)
++..++..+..-=+ .| +.......+-++-+-.|+.. +.|.++++ |.+ + |.. +.+ +.++
T Consensus 83 -e~~~al~~~D~avl----------vv-da~~Gv~~~t~~~~~~~~~~-~~p~~i~iNk~D~~--~-~~~--~~l-~~~~ 143 (267)
T d2dy1a2 83 -EIRGALEAADAALV----------AV-SAEAGVQVGTERAWTVAERL-GLPRMVVVTKLDKG--G-DYY--ALL-EDLR 143 (267)
T ss_dssp -HHHHHHHHCSEEEE----------EE-ETTTCSCHHHHHHHHHHHHT-TCCEEEEEECGGGC--C-CHH--HHH-HHHH
T ss_pred -HHHHHHCCCCCEEE----------EE-ECCCCCCCHHHHHHHHHHHC-CCCCCCCCCCCCCC--C-CCH--HHH-HHHH
T ss_conf -56543124673389----------84-23577421157887765540-44310133320222--2-101--234-4688
Q ss_pred HHCCCCEEEEEEC----CCHHH-HC-CCEEEEEECCEEEEECCHHHHHH
Q ss_conf 8618964999806----92255-30-58899995988988259678951
Q 001411 1018 KLMEGRTTIMVAH----RLSTI-RN-ADKIAVLQQGKVAEIGSHEQLLR 1060 (1082)
Q Consensus 1018 ~~~~~~TvI~IsH----rl~~i-~~-~DrI~vl~~G~ive~G~~~eLl~ 1060 (1082)
+.+....-+.+-. ....+ .. ..+.+..++|.-.+.--|.++.+
T Consensus 144 ~~lg~~vp~~~Pi~~~~~f~GvvDl~~~~a~~~~~~~~~~~~ip~~~~~ 192 (267)
T d2dy1a2 144 STLGPILPIDLPLYEGGKWVGLIDVFHGKAYRYENGEEREAEVPPEERE 192 (267)
T ss_dssp HHHCSEEECEEEEEETTEEEEEEETTTTEEEEEETTEEEEECCCGGGHH
T ss_pred HHHCCCCCEEEEECCCCCEEEEEECCCCEEEEECCCCCCEEECCHHHHH
T ss_conf 8746586768600258832687624765489961898745407777899
|
| >d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=83.10 E-value=0.46 Score=20.76 Aligned_cols=29 Identities=28% Similarity=0.508 Sum_probs=20.3
Q ss_pred EEEEECCCCCCHHHHHHHHHHCCCCCCCEEEEC
Q ss_conf 999984998808999999970788997679998
Q 001411 235 TFAFVGPSGSGKSTIISMVQRLYEPTSGKILLD 267 (1082)
Q Consensus 235 ~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~i~ 267 (1082)
.+.++||.||||||+.+.|+-.+ |-..++
T Consensus 4 rIvl~G~pGSGKtT~a~~La~~~----g~~~i~ 32 (180)
T d1akya1 4 RMVLIGPPGAGKGTQAPNLQERF----HAAHLA 32 (180)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH----CCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHH----CCCEEE
T ss_conf 99998999999899999999996----994583
|
| >d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=82.99 E-value=0.39 Score=21.35 Aligned_cols=44 Identities=23% Similarity=0.344 Sum_probs=29.4
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCHHH
Q ss_conf 998778517778989798999999999861896499980692255
Q 001411 991 NPSILLLDEATSALDTASENLIQEALDKLMEGRTTIMVAHRLSTI 1035 (1082)
Q Consensus 991 ~p~ILiLDEpTS~LD~~te~~I~~~L~~~~~~~TvI~IsHrl~~i 1035 (1082)
+..++++||.- .+.......+...+......+..|+++++.+.+
T Consensus 109 ~~~iilide~d-~~~~~~~~~ll~~l~~~~~~~~~i~~~n~~~~i 152 (231)
T d1iqpa2 109 SFKIIFLDEAD-ALTQDAQQALRRTMEMFSSNVRFILSCNYSSKI 152 (231)
T ss_dssp SCEEEEEETGG-GSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGS
T ss_pred CCEEEEEHHHH-HCCHHHHHHHHHHCCCCCCCEEEEECCCCHHHC
T ss_conf 72288614344-312147898764112477644788614876656
|
| >d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=82.90 E-value=0.45 Score=20.84 Aligned_cols=22 Identities=32% Similarity=0.668 Sum_probs=20.2
Q ss_pred EEEECCCCCCHHHHHHHHHHCC
Q ss_conf 9998499880899999997078
Q 001411 236 FAFVGPSGSGKSTIISMVQRLY 257 (1082)
Q Consensus 236 ~~ivG~sGsGKSTll~~l~g~~ 257 (1082)
+.+.||+|+||||+++.++..+
T Consensus 36 lll~Gp~G~GKTtl~~~i~~~l 57 (237)
T d1sxjd2 36 MLFYGPPGTGKTSTILALTKEL 57 (237)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 9998999998499999999997
|
| >d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Deinococcus radiodurans [TaxId: 1299]
Probab=82.87 E-value=0.8 Score=18.69 Aligned_cols=54 Identities=19% Similarity=0.388 Sum_probs=37.4
Q ss_pred EEECCCEEEEECCCCCCHHHHHHHHHHCCCCCCC-EEEECCEECCCCCHHHHHHHCEE
Q ss_conf 8748989999849988089999999707889976-79998950788787888411358
Q 001411 229 SVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSG-KILLDGHDLKSLQLKWLREQMGL 285 (1082)
Q Consensus 229 ~i~~G~~~~ivG~sGsGKSTll~~l~g~~~~~~G-~i~i~g~~~~~~~~~~~~~~i~~ 285 (1082)
-++.|.++-+.||+||||||++..++.......| -+++|... .+++. +.+.++.
T Consensus 53 Gip~g~itei~G~~~sGKT~l~l~~~~~aqk~g~~v~yiDtE~--~~~~~-~a~~~Gv 107 (268)
T d1xp8a1 53 GIPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEH--ALDPV-YARALGV 107 (268)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSC--CCCHH-HHHHTTC
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEECCC--CCCHH-HHHHHCC
T ss_conf 8667547898058765227999999999970799899998876--58999-9998289
|
| >d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=82.86 E-value=0.51 Score=20.37 Aligned_cols=30 Identities=17% Similarity=0.355 Sum_probs=24.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECC
Q ss_conf 8999838999778899988132669841899999
Q 001411 865 SLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDG 898 (1082)
Q Consensus 865 ~iaIvG~SGsGKSTL~~lL~gl~~p~~G~I~idg 898 (1082)
++.|.|+-||||||+++.|..-| |-..|+.
T Consensus 4 rIvl~G~pGSGKtT~a~~La~~~----g~~~i~~ 33 (180)
T d1akya1 4 RMVLIGPPGAGKGTQAPNLQERF----HAAHLAT 33 (180)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH----CCEEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH----CCCEEEC
T ss_conf 99998999999899999999996----9945834
|
| >d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: YjeE-like domain: Hypothetical protein HI0065 species: Haemophilus influenzae [TaxId: 727]
Probab=82.84 E-value=0.56 Score=20.00 Aligned_cols=27 Identities=19% Similarity=0.224 Sum_probs=13.0
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHHCC
Q ss_conf 489899998499880899999997078
Q 001411 231 DAGKTFAFVGPSGSGKSTIISMVQRLY 257 (1082)
Q Consensus 231 ~~G~~~~ivG~sGsGKSTll~~l~g~~ 257 (1082)
++|.++.+.|+-||||||+.+.++.-+
T Consensus 31 ~~g~ii~L~G~LGaGKTtfvr~~~~~l 57 (158)
T d1htwa_ 31 EKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHC
T ss_conf 998299996687765889999987642
|
| >d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=82.83 E-value=0.58 Score=19.86 Aligned_cols=29 Identities=17% Similarity=0.208 Sum_probs=24.7
Q ss_pred EEECCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 76289589998389997788999881326
Q 001411 859 KVSAGRSLAVVGQSGSGKSTVISLVMRFY 887 (1082)
Q Consensus 859 ~I~~Ge~iaIvG~SGsGKSTL~~lL~gl~ 887 (1082)
-+++|+.+-|.|++|+||||++.-++--.
T Consensus 30 Gl~~G~l~~i~G~~G~GKT~~~l~~a~~~ 58 (258)
T d2i1qa2 30 GLESQSVTEFAGVFGSGKTQIMHQSCVNL 58 (258)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCCCEEEEEEECCCCCHHHHHHHHHHHH
T ss_conf 86288599999179999899999999999
|
| >d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor IF2/eIF5b, N-terminal (G) domain species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=82.80 E-value=0.51 Score=20.39 Aligned_cols=23 Identities=22% Similarity=0.369 Sum_probs=20.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 89998389997788999881326
Q 001411 865 SLAVVGQSGSGKSTVISLVMRFY 887 (1082)
Q Consensus 865 ~iaIvG~SGsGKSTL~~lL~gl~ 887 (1082)
.+||+|+.++|||||++.|++..
T Consensus 7 ~IaIiGh~d~GKSTL~~~L~~~~ 29 (227)
T d1g7sa4 7 IVSVLGHVDHGKTTLLDHIRGSA 29 (227)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHHHHC
T ss_conf 79999699854999999998236
|
| >d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: YjeE-like domain: Hypothetical protein HI0065 species: Haemophilus influenzae [TaxId: 727]
Probab=82.70 E-value=0.58 Score=19.91 Aligned_cols=32 Identities=16% Similarity=0.178 Sum_probs=27.7
Q ss_pred EEECCCEEEEECCCCCCHHHHHHHHHCCCCCC
Q ss_conf 76289589998389997788999881326698
Q 001411 859 KVSAGRSLAVVGQSGSGKSTVISLVMRFYDPI 890 (1082)
Q Consensus 859 ~I~~Ge~iaIvG~SGsGKSTL~~lL~gl~~p~ 890 (1082)
..+||..+.+.|+=||||||+++-+.+-+-..
T Consensus 29 ~~~~g~ii~L~G~LGaGKTtfvr~~~~~lg~~ 60 (158)
T d1htwa_ 29 HTEKAIMVYLNGDLGAGKTTLTRGMLQGIGHQ 60 (158)
T ss_dssp CCSSCEEEEEECSTTSSHHHHHHHHHHHTTCC
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHCCCC
T ss_conf 57998299996687765889999987642234
|
| >d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermus thermophilus [TaxId: 274]
Probab=82.70 E-value=0.35 Score=21.78 Aligned_cols=24 Identities=25% Similarity=0.540 Sum_probs=20.8
Q ss_pred EEEEECCCCCCHHHHHHHHHHCCC
Q ss_conf 999984998808999999970788
Q 001411 235 TFAFVGPSGSGKSTIISMVQRLYE 258 (1082)
Q Consensus 235 ~~~ivG~sGsGKSTll~~l~g~~~ 258 (1082)
.+.+.||.|+||||+++++++.+.
T Consensus 37 ~~Ll~GPpG~GKTtla~~la~~~~ 60 (239)
T d1ixsb2 37 HLLLFGPPGLGKTTLAHVIAHELG 60 (239)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 389889799878889999999849
|
| >d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxynucleoside monophosphate kinase species: Bacteriophage T4 [TaxId: 10665]
Probab=82.69 E-value=0.43 Score=21.02 Aligned_cols=30 Identities=27% Similarity=0.414 Sum_probs=23.4
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEC
Q ss_conf 5899983899977889998813266984189999
Q 001411 864 RSLAVVGQSGSGKSTVISLVMRFYDPISGTVLID 897 (1082)
Q Consensus 864 e~iaIvG~SGsGKSTL~~lL~gl~~p~~G~I~id 897 (1082)
.+|||+|.-||||||.++.|..-+ |-..++
T Consensus 2 ~iIgiTG~igSGKsTva~~l~e~~----g~~~i~ 31 (241)
T d1deka_ 2 KLIFLSGVKRSGKDTTADFIMSNY----SAVKYQ 31 (241)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHS----CEEECC
T ss_pred EEEEEECCCCCCHHHHHHHHHHHC----CCEEEC
T ss_conf 899997999988999999999868----985980
|
| >d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=82.69 E-value=0.55 Score=20.05 Aligned_cols=25 Identities=28% Similarity=0.472 Sum_probs=21.7
Q ss_pred CEEEEECCCCCCHHHHHHHHHHCCC
Q ss_conf 8999984998808999999970788
Q 001411 234 KTFAFVGPSGSGKSTIISMVQRLYE 258 (1082)
Q Consensus 234 ~~~~ivG~sGsGKSTll~~l~g~~~ 258 (1082)
.-+.+.||.|||||++++.++....
T Consensus 39 ~giLL~GppGtGKT~l~~ala~~~~ 63 (258)
T d1e32a2 39 RGILLYGPPGTGKTLIARAVANETG 63 (258)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHC
T ss_conf 6468766998883089999998748
|
| >d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Haemophilus influenzae [TaxId: 727]
Probab=82.68 E-value=0.82 Score=18.64 Aligned_cols=22 Identities=27% Similarity=0.457 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHHHC
Q ss_conf 9999849988089999999707
Q 001411 235 TFAFVGPSGSGKSTIISMVQRL 256 (1082)
Q Consensus 235 ~~~ivG~sGsGKSTll~~l~g~ 256 (1082)
.++|||-..+|||||++.|.+-
T Consensus 4 ~~GivG~Pn~GKSTlf~~lt~~ 25 (278)
T d1jala1 4 KCGIVGLPNVGKSTLFNALTKA 25 (278)
T ss_dssp EEEEECCTTSSHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 4888899999889999999779
|
| >d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Escherichia coli [TaxId: 562]
Probab=82.56 E-value=0.2 Score=23.70 Aligned_cols=25 Identities=28% Similarity=0.446 Sum_probs=21.9
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9589998389997788999881326
Q 001411 863 GRSLAVVGQSGSGKSTVISLVMRFY 887 (1082)
Q Consensus 863 Ge~iaIvG~SGsGKSTL~~lL~gl~ 887 (1082)
.-+|+|+|++++|||||++.|.+..
T Consensus 16 ~~~I~lvG~~NvGKSSL~n~L~~~~ 40 (188)
T d1puia_ 16 GIEVAFAGRSNAGKSSALNTLTNQK 40 (188)
T ss_dssp SEEEEEEECTTSSHHHHHTTTCCC-
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 9789998899998999999985898
|
| >d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Lactobacillus casei [TaxId: 1582]
Probab=82.49 E-value=0.54 Score=20.18 Aligned_cols=33 Identities=24% Similarity=0.292 Sum_probs=24.5
Q ss_pred CCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 3012038762895899983899977889998813
Q 001411 852 IFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMR 885 (1082)
Q Consensus 852 vL~~isl~I~~Ge~iaIvG~SGsGKSTL~~lL~g 885 (1082)
.+|. ++-.-.|.-+.|+|+||+||||++..|..
T Consensus 4 ~lH~-~~v~~~g~gvl~~G~sG~GKStlal~l~~ 36 (176)
T d1kkma_ 4 SMHG-VLVDIYGLGVLITGDSGVGKSETALELVQ 36 (176)
T ss_dssp EEEE-EEEEETTEEEEEECCTTSCHHHHHHHHHH
T ss_pred EEEE-EEEEECCEEEEEEECCCCCHHHHHHHHHH
T ss_conf 2899-99999999999980899998999999998
|
| >d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of beta subunit of F1 ATP synthase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=82.43 E-value=0.6 Score=19.79 Aligned_cols=32 Identities=22% Similarity=0.338 Sum_probs=27.5
Q ss_pred CEEEEEECCCEEEEECCCCCCHHHHHHHHHHC
Q ss_conf 10388748989999849988089999999707
Q 001411 225 NLNFSVDAGKTFAFVGPSGSGKSTIISMVQRL 256 (1082)
Q Consensus 225 ~is~~i~~G~~~~ivG~sGsGKSTll~~l~g~ 256 (1082)
|.-+.+.+|+..+|.|++|+|||+|+.-++.-
T Consensus 60 D~l~pigkGQr~~If~~~g~GKt~l~~~i~~~ 91 (276)
T d2jdid3 60 DLLAPYAKGGKIGLFGGAGVGKTVLIMELINN 91 (276)
T ss_dssp HHHSCEETTCEEEEEECTTSSHHHHHHHHHHH
T ss_pred EEECCCCCCCEEEEECCCCCCHHHHHHHHHHH
T ss_conf 10256367887776679998989999999998
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=82.42 E-value=0.53 Score=20.20 Aligned_cols=21 Identities=19% Similarity=0.404 Sum_probs=18.7
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 899983899977889998813
Q 001411 865 SLAVVGQSGSGKSTVISLVMR 885 (1082)
Q Consensus 865 ~iaIvG~SGsGKSTL~~lL~g 885 (1082)
|+.++|.+|+|||||++-+.+
T Consensus 7 Ki~vvG~~~vGKTsLi~~l~~ 27 (169)
T d3raba_ 7 KILIIGNSSVGKTSFLFRYAD 27 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHC
T ss_conf 999999999198999999973
|
| >d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=82.32 E-value=0.43 Score=20.97 Aligned_cols=22 Identities=23% Similarity=0.440 Sum_probs=20.1
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9998389997788999881326
Q 001411 866 LAVVGQSGSGKSTVISLVMRFY 887 (1082)
Q Consensus 866 iaIvG~SGsGKSTL~~lL~gl~ 887 (1082)
+-+.||+|+||||+++++++-+
T Consensus 36 lll~Gp~G~GKTtl~~~i~~~l 57 (237)
T d1sxjd2 36 MLFYGPPGTGKTSTILALTKEL 57 (237)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 9998999998499999999997
|
| >d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap2a species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.31 E-value=0.47 Score=20.62 Aligned_cols=22 Identities=23% Similarity=0.335 Sum_probs=18.9
Q ss_pred EEEEECCCCCCHHHHHHHHHHC
Q ss_conf 9999849988089999999707
Q 001411 235 TFAFVGPSGSGKSTIISMVQRL 256 (1082)
Q Consensus 235 ~~~ivG~sGsGKSTll~~l~g~ 256 (1082)
.++++|.+|+|||||++-+.+-
T Consensus 5 Ki~lvG~~~vGKTsLi~r~~~~ 26 (167)
T d1kaoa_ 5 KVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999998993999999999719
|
| >d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.24 E-value=0.46 Score=20.71 Aligned_cols=22 Identities=18% Similarity=0.466 Sum_probs=19.1
Q ss_pred EEEEECCCCCCHHHHHHHHHHC
Q ss_conf 9999849988089999999707
Q 001411 235 TFAFVGPSGSGKSTIISMVQRL 256 (1082)
Q Consensus 235 ~~~ivG~sGsGKSTll~~l~g~ 256 (1082)
+++++|..|+|||||++-+.+-
T Consensus 7 Ki~lvG~~~vGKTsLi~~l~~~ 28 (171)
T d2ew1a1 7 KIVLIGNAGVGKTCLVRRFTQG 28 (171)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999991989999999729
|
| >d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: cH-p21 Ras protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.23 E-value=0.73 Score=19.04 Aligned_cols=21 Identities=38% Similarity=0.629 Sum_probs=18.9
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 899983899977889998813
Q 001411 865 SLAVVGQSGSGKSTVISLVMR 885 (1082)
Q Consensus 865 ~iaIvG~SGsGKSTL~~lL~g 885 (1082)
+++++|.+|+|||||++-+.+
T Consensus 5 Ki~viG~~~vGKTsli~~l~~ 25 (166)
T d1ctqa_ 5 KLVVVGAGGVGKSALTIQLIQ 25 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999799899999999980
|
| >d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=82.21 E-value=0.77 Score=18.86 Aligned_cols=28 Identities=32% Similarity=0.552 Sum_probs=14.6
Q ss_pred EEEEECCCCCCHHHHHHHHHHCCCCCCC
Q ss_conf 9999849988089999999707889976
Q 001411 235 TFAFVGPSGSGKSTIISMVQRLYEPTSG 262 (1082)
Q Consensus 235 ~~~ivG~sGsGKSTll~~l~g~~~~~~G 262 (1082)
.+.++|..|+|||||++-+.....|+.|
T Consensus 4 KivllG~~~vGKTsl~~r~~~~~~~t~~ 31 (195)
T d1svsa1 4 KLLLLGAGESGKSTIVKQMKIIHEAGTG 31 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHSCCCS
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCCCCC
T ss_conf 9999999998889999988408979724
|
| >d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=82.17 E-value=0.62 Score=19.66 Aligned_cols=33 Identities=24% Similarity=0.479 Sum_probs=24.9
Q ss_pred CEEEEECCCCCCHHHHHHHHHHCCCCCCCEEEECC
Q ss_conf 89999849988089999999707889976799989
Q 001411 234 KTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDG 268 (1082)
Q Consensus 234 ~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~i~g 268 (1082)
..+.++||+|+|||.|.+.|+..+.. --+.+|.
T Consensus 53 ~~~lf~Gp~GvGKT~lak~la~~l~~--~~i~~d~ 85 (315)
T d1r6bx3 53 GSFLFAGPTGVGKTEVTVQLSKALGI--ELLRFDM 85 (315)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHTC--EEEEEEG
T ss_pred EEEEEECCCCCHHHHHHHHHHHHCCC--CEEEECC
T ss_conf 58999778750069999999863367--7067415
|
| >d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Dictyostelium discoideum [TaxId: 44689]
Probab=82.14 E-value=0.5 Score=20.41 Aligned_cols=26 Identities=27% Similarity=0.397 Sum_probs=22.3
Q ss_pred EEEEECCCCCCHHHHHHHHHHCCC-CC
Q ss_conf 999984998808999999970788-99
Q 001411 235 TFAFVGPSGSGKSTIISMVQRLYE-PT 260 (1082)
Q Consensus 235 ~~~ivG~sGsGKSTll~~l~g~~~-~~ 260 (1082)
.++++|.-++|||||+++|+|.-- |.
T Consensus 26 ~ivVvG~~ssGKSSliNaLlG~~~lP~ 52 (306)
T d1jwyb_ 26 QIVVVGSQSSGKSSVLENIVGRDFLPR 52 (306)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSCCCCC
T ss_pred EEEEEECCCCCHHHHHHHHHCCCCCCC
T ss_conf 599981898979999999968997887
|
| >d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]
Probab=82.02 E-value=0.37 Score=21.52 Aligned_cols=22 Identities=32% Similarity=0.484 Sum_probs=17.7
Q ss_pred CEEEEECCCCCCHHHHHHHHHH
Q ss_conf 8999984998808999999970
Q 001411 234 KTFAFVGPSGSGKSTIISMVQR 255 (1082)
Q Consensus 234 ~~~~ivG~sGsGKSTll~~l~g 255 (1082)
=.++++|++|+|||||++-+.+
T Consensus 18 ~KI~lvG~~~vGKTsLi~~l~~ 39 (182)
T d1moza_ 18 LRILILGLDGAGKTTILYRLQI 39 (182)
T ss_dssp EEEEEEEETTSSHHHHHHHTCC
T ss_pred EEEEEECCCCCCHHHHHHHHHC
T ss_conf 8999999999988999988733
|
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=81.91 E-value=0.49 Score=20.54 Aligned_cols=22 Identities=27% Similarity=0.427 Sum_probs=18.7
Q ss_pred EEEEECCCCCCHHHHHHHHHHC
Q ss_conf 9999849988089999999707
Q 001411 235 TFAFVGPSGSGKSTIISMVQRL 256 (1082)
Q Consensus 235 ~~~ivG~sGsGKSTll~~l~g~ 256 (1082)
.++++|.+|+|||||++.+.+.
T Consensus 4 Ki~vvG~~~vGKTSli~~l~~~ 25 (166)
T d1g16a_ 4 KILLIGDSGVGKSCLLVRFVED 25 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999996789999999868
|
| >d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=81.75 E-value=0.52 Score=20.29 Aligned_cols=54 Identities=20% Similarity=0.452 Sum_probs=37.3
Q ss_pred EEECCCEEEEECCCCCCHHHHHHHHHHCCCCCCCE-EEECCEECCCCCHHHHHHHCEE
Q ss_conf 87489899998499880899999997078899767-9998950788787888411358
Q 001411 229 SVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGK-ILLDGHDLKSLQLKWLREQMGL 285 (1082)
Q Consensus 229 ~i~~G~~~~ivG~sGsGKSTll~~l~g~~~~~~G~-i~i~g~~~~~~~~~~~~~~i~~ 285 (1082)
-++.|.++.+.||+||||||++..++.......|. +++|... .+++.. .++++.
T Consensus 56 G~~~g~i~e~~G~~~~GKT~l~l~~~~~~q~~g~~~vyIDtE~--~~~~e~-a~~~Gv 110 (269)
T d1mo6a1 56 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEH--ALDPDY-AKKLGV 110 (269)
T ss_dssp SBCSSSEEEEECSSSSSHHHHHHHHHHHHHHTTCEEEEEESSC--CCCHHH-HHHHTC
T ss_pred CCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEEECCC--CCCHHH-HHHHCC
T ss_conf 8666336999648874889999999998754898899998976--679999-998099
|
| >d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rac species: Human (Homo sapiens) [TaxId: 9606]
Probab=81.74 E-value=0.52 Score=20.30 Aligned_cols=21 Identities=19% Similarity=0.328 Sum_probs=18.5
Q ss_pred EEEEECCCCCCHHHHHHHHHH
Q ss_conf 999984998808999999970
Q 001411 235 TFAFVGPSGSGKSTIISMVQR 255 (1082)
Q Consensus 235 ~~~ivG~sGsGKSTll~~l~g 255 (1082)
.++++|.+|+|||||++-+.+
T Consensus 7 KivviG~~~vGKTsli~~~~~ 27 (183)
T d1mh1a_ 7 KCVVVGDGAVGKTCLLISYTT 27 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999799999999974
|
| >d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab2b species: Human (Homo sapiens) [TaxId: 9606]
Probab=81.69 E-value=0.52 Score=20.27 Aligned_cols=22 Identities=23% Similarity=0.504 Sum_probs=18.9
Q ss_pred EEEEECCCCCCHHHHHHHHHHC
Q ss_conf 9999849988089999999707
Q 001411 235 TFAFVGPSGSGKSTIISMVQRL 256 (1082)
Q Consensus 235 ~~~ivG~sGsGKSTll~~l~g~ 256 (1082)
.++++|++|+|||||++-+.+-
T Consensus 5 KivvvG~~~vGKTsli~r~~~~ 26 (173)
T d2a5ja1 5 KYIIIGDTGVGKSCLLLQFTDK 26 (173)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999999993999999999629
|
| >d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Escherichia coli [TaxId: 562]
Probab=81.55 E-value=0.58 Score=19.91 Aligned_cols=43 Identities=23% Similarity=0.265 Sum_probs=33.5
Q ss_pred EEEECCCEEEEECCCCCCHHHHHHHHHCCCC-CCCCEEEECCCC
Q ss_conf 8762895899983899977889998813266-984189999950
Q 001411 858 LKVSAGRSLAVVGQSGSGKSTVISLVMRFYD-PISGTVLIDGYD 900 (1082)
Q Consensus 858 l~I~~Ge~iaIvG~SGsGKSTL~~lL~gl~~-p~~G~I~idg~d 900 (1082)
=-+++|..+-|.|++||||||++.-++.... +..-.++||...
T Consensus 49 GGi~~g~itei~G~~gsGKTtl~l~~~~~~q~~g~~~vyidtE~ 92 (263)
T d1u94a1 49 GGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEH 92 (263)
T ss_dssp SSEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred CCCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEECCCC
T ss_conf 99667358998057774789999999999870898799986544
|
| >d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=81.46 E-value=0.55 Score=20.09 Aligned_cols=33 Identities=18% Similarity=0.258 Sum_probs=24.9
Q ss_pred CCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHHCC
Q ss_conf 410103887489899998499880899999997078
Q 001411 222 VFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLY 257 (1082)
Q Consensus 222 ~l~~is~~i~~G~~~~ivG~sGsGKSTll~~l~g~~ 257 (1082)
+|+.++ .|=.+++|+||-++|||||++.|.|..
T Consensus 24 ~l~~~~---~~v~vvsi~G~~~sGKS~llN~l~~~~ 56 (277)
T d1f5na2 24 ILSAIT---QPMVVVAIVGLYRTGKSYLMNKLAGKK 56 (277)
T ss_dssp HHHTCC---SBEEEEEEEEBTTSSHHHHHHHHTTCS
T ss_pred HHHCCC---CCEEEEEEECCCCCCHHHHHHHHCCCC
T ss_conf 997079---987999988999997999999980998
|
| >d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Deinococcus radiodurans [TaxId: 1299]
Probab=81.42 E-value=0.54 Score=20.17 Aligned_cols=54 Identities=22% Similarity=0.388 Sum_probs=38.4
Q ss_pred EEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCC-EEEECCCCCCCCCHHHHHCCEEE
Q ss_conf 7628958999838999778899988132669841-89999950799997887333288
Q 001411 859 KVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISG-TVLIDGYDIRTLNLRSLRRKIGL 915 (1082)
Q Consensus 859 ~I~~Ge~iaIvG~SGsGKSTL~~lL~gl~~p~~G-~I~idg~di~~~~~~~lr~~i~~ 915 (1082)
-++.|..+-|.|++||||||++..++....-..| .++||... .++++ +.+++|+
T Consensus 53 Gip~g~itei~G~~~sGKT~l~l~~~~~aqk~g~~v~yiDtE~--~~~~~-~a~~~Gv 107 (268)
T d1xp8a1 53 GIPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEH--ALDPV-YARALGV 107 (268)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSC--CCCHH-HHHHTTC
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEECCC--CCCHH-HHHHHCC
T ss_conf 8667547898058765227999999999970799899998876--58999-9998289
|
| >d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=81.41 E-value=0.55 Score=20.10 Aligned_cols=24 Identities=21% Similarity=0.368 Sum_probs=21.1
Q ss_pred CEEEEECCCCCCHHHHHHHHHHCC
Q ss_conf 899998499880899999997078
Q 001411 234 KTFAFVGPSGSGKSTIISMVQRLY 257 (1082)
Q Consensus 234 ~~~~ivG~sGsGKSTll~~l~g~~ 257 (1082)
..+.+.||.|||||++++.++...
T Consensus 41 ~~vLL~GppGtGKT~la~alA~~~ 64 (246)
T d1d2na_ 41 VSVLLEGPPHSGKTALAAKIAEES 64 (246)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHCC
T ss_conf 079988969998899999986201
|
| >d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab23 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=81.38 E-value=0.86 Score=18.44 Aligned_cols=21 Identities=33% Similarity=0.553 Sum_probs=18.3
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 899983899977889998813
Q 001411 865 SLAVVGQSGSGKSTVISLVMR 885 (1082)
Q Consensus 865 ~iaIvG~SGsGKSTL~~lL~g 885 (1082)
|++++|.+|+|||||++-+.+
T Consensus 4 Kv~liG~~~vGKSsLi~rl~~ 24 (164)
T d1z2aa1 4 KMVVVGNGAVGKSSMIQRYCK 24 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999899598999999982
|
| >d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab7 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=81.35 E-value=0.63 Score=19.58 Aligned_cols=21 Identities=24% Similarity=0.612 Sum_probs=18.5
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 899983899977889998813
Q 001411 865 SLAVVGQSGSGKSTVISLVMR 885 (1082)
Q Consensus 865 ~iaIvG~SGsGKSTL~~lL~g 885 (1082)
|++++|.+|+|||||++-+.+
T Consensus 4 Kv~vvG~~~vGKSSLi~~l~~ 24 (184)
T d1vg8a_ 4 KVIILGDSGVGKTSLMNQYVN 24 (184)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999198999999971
|
| >d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab11b species: Human (Homo sapiens) [TaxId: 9606]
Probab=81.31 E-value=0.83 Score=18.55 Aligned_cols=21 Identities=38% Similarity=0.691 Sum_probs=18.7
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 899983899977889998813
Q 001411 865 SLAVVGQSGSGKSTVISLVMR 885 (1082)
Q Consensus 865 ~iaIvG~SGsGKSTL~~lL~g 885 (1082)
|++++|+.|+|||||++-+.+
T Consensus 6 Ki~vvG~~~vGKTsLi~~~~~ 26 (175)
T d2f9la1 6 KVVLIGDSGVGKSNLLSRFTR 26 (175)
T ss_dssp EEEEESSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999098999999982
|
| >d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Metallochaperone MeaB species: Methylobacterium extorquens [TaxId: 408]
Probab=81.31 E-value=0.64 Score=19.55 Aligned_cols=25 Identities=28% Similarity=0.432 Sum_probs=16.8
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9589998389997788999881326
Q 001411 863 GRSLAVVGQSGSGKSTVISLVMRFY 887 (1082)
Q Consensus 863 Ge~iaIvG~SGsGKSTL~~lL~gl~ 887 (1082)
.-++||+|+-|+|||||+..|...+
T Consensus 51 ~~~igitG~pGaGKSTli~~l~~~~ 75 (323)
T d2qm8a1 51 AIRVGITGVPGVGKSTTIDALGSLL 75 (323)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 1598611799888999999999987
|
| >d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Escherichia coli [TaxId: 562]
Probab=81.30 E-value=0.43 Score=20.97 Aligned_cols=38 Identities=26% Similarity=0.419 Sum_probs=24.1
Q ss_pred EEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEE
Q ss_conf 76289589998389997788999881326698418999
Q 001411 859 KVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLI 896 (1082)
Q Consensus 859 ~I~~Ge~iaIvG~SGsGKSTL~~lL~gl~~p~~G~I~i 896 (1082)
+-++-..+++|||+|+||||.+-=|...+.-..-+|.+
T Consensus 5 ~~~~p~vi~lvGptGvGKTTTiAKLA~~~~~~g~kV~l 42 (211)
T d2qy9a2 5 EGKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVML 42 (211)
T ss_dssp CSCTTEEEEEECCTTSCHHHHHHHHHHHHHTTTCCEEE
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEE
T ss_conf 89999799998999999899999999999977994799
|
| >d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Cow (Bos taurus) [TaxId: 9913]
Probab=81.28 E-value=0.67 Score=19.36 Aligned_cols=28 Identities=36% Similarity=0.422 Sum_probs=20.9
Q ss_pred EEEEECCCCCCHHHHHHHH-HHCCCCCCC
Q ss_conf 9999849988089999999-707889976
Q 001411 235 TFAFVGPSGSGKSTIISMV-QRLYEPTSG 262 (1082)
Q Consensus 235 ~~~ivG~sGsGKSTll~~l-~g~~~~~~G 262 (1082)
.+.++|.+|+|||||++-+ .+...|+-|
T Consensus 8 KilllG~~~vGKTsll~~~~~~~~~pTiG 36 (221)
T d1azta2 8 RLLLLGAGESGKSTIVKQMRILHVVLTSG 36 (221)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCCCCS
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCC
T ss_conf 79999899998899999895098278888
|
| >d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Bacterial conjugative coupling protein TrwB species: Escherichia coli [TaxId: 562]
Probab=81.25 E-value=0.49 Score=20.50 Aligned_cols=34 Identities=18% Similarity=0.351 Sum_probs=22.7
Q ss_pred CEEEEECCCCCCHHHHHHHHH-HCCCCCCCEEEEC
Q ss_conf 899998499880899999997-0788997679998
Q 001411 234 KTFAFVGPSGSGKSTIISMVQ-RLYEPTSGKILLD 267 (1082)
Q Consensus 234 ~~~~ivG~sGsGKSTll~~l~-g~~~~~~G~i~i~ 267 (1082)
..+.|+|++|||||++++.+. ..+....+-|.+|
T Consensus 51 ~H~~I~G~tGsGKT~~l~~li~~~~~~g~~~iiiD 85 (433)
T d1e9ra_ 51 RHLLVNGATGTGKSVLLRELAYTGLLRGDRMVIVD 85 (433)
T ss_dssp GCEEEEECTTSSHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred CEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEE
T ss_conf 65899907999689999999999984799889996
|
| >d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein RheB species: Human (Homo sapiens) [TaxId: 9606]
Probab=81.17 E-value=0.82 Score=18.61 Aligned_cols=38 Identities=26% Similarity=0.545 Sum_probs=26.4
Q ss_pred CCEEEEECCCCCCHHHHHHHHHC-----CCCCCCCE-----EEECCCC
Q ss_conf 95899983899977889998813-----26698418-----9999950
Q 001411 863 GRSLAVVGQSGSGKSTVISLVMR-----FYDPISGT-----VLIDGYD 900 (1082)
Q Consensus 863 Ge~iaIvG~SGsGKSTL~~lL~g-----l~~p~~G~-----I~idg~d 900 (1082)
.-+++++|.+|+|||||++.+.+ .+.|+.|. +.+||.+
T Consensus 4 ~~Kv~liG~~~vGKTsLl~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~ 51 (167)
T d1xtqa1 4 SRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQE 51 (167)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSCCCSCCCSSCCEEEEEEEEETTEE
T ss_pred CEEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCEECCCCEEEECCCEE
T ss_conf 338999998992989999999719888544754211310388317679
|
| >d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Equine herpesvirus type 4 [TaxId: 10331]
Probab=81.15 E-value=0.91 Score=18.22 Aligned_cols=32 Identities=22% Similarity=0.179 Sum_probs=25.6
Q ss_pred EEEEECCCCCCHHHHHHHHHHCCCCCCCEEEE
Q ss_conf 99998499880899999997078899767999
Q 001411 235 TFAFVGPSGSGKSTIISMVQRLYEPTSGKILL 266 (1082)
Q Consensus 235 ~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~i 266 (1082)
.+.|-|+-|+||||+++.|...+....+.+.+
T Consensus 8 rI~iEG~iGsGKSTl~~~L~~~l~~~~~v~~~ 39 (333)
T d1p6xa_ 8 RIYLDGVYGIGKSTTGRVMASAASGGSPTLYF 39 (333)
T ss_dssp EEEEECSTTSSHHHHHHHHHSGGGCSSCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCCCEEEE
T ss_conf 99998886678999999999986569976998
|
| >d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermotoga maritima [TaxId: 2336]
Probab=81.10 E-value=0.48 Score=20.58 Aligned_cols=28 Identities=25% Similarity=0.434 Sum_probs=19.8
Q ss_pred EECCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 6289589998389997788999881326
Q 001411 860 VSAGRSLAVVGQSGSGKSTVISLVMRFY 887 (1082)
Q Consensus 860 I~~Ge~iaIvG~SGsGKSTL~~lL~gl~ 887 (1082)
-++...+++|||+|+||||.+-=|...+
T Consensus 8 ~~~p~vi~lvGptGvGKTTTiAKLAa~~ 35 (213)
T d1vmaa2 8 PEPPFVIMVVGVNGTGKTTSCGKLAKMF 35 (213)
T ss_dssp SSSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 9999899998999998899999999999
|
| >d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL8A [TaxId: 9606]
Probab=81.08 E-value=0.64 Score=19.54 Aligned_cols=21 Identities=33% Similarity=0.561 Sum_probs=18.6
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 899983899977889998813
Q 001411 865 SLAVVGQSGSGKSTVISLVMR 885 (1082)
Q Consensus 865 ~iaIvG~SGsGKSTL~~lL~g 885 (1082)
++.++|++|+|||||++.+.+
T Consensus 4 ki~i~G~~~~GKTsLl~~l~~ 24 (164)
T d1zd9a1 4 ELTLVGLQYSGKTTFVNVIAS 24 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHC
T ss_conf 999999999898999999971
|
| >d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Dictyostelium discoideum [TaxId: 44689]
Probab=81.00 E-value=0.6 Score=19.76 Aligned_cols=53 Identities=17% Similarity=0.200 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHCCCCC--EEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEC
Q ss_conf 49999999999703998--7785177789897989999999998618964999806
Q 001411 977 GQKQRVAIARAILKNPS--ILLLDEATSALDTASENLIQEALDKLMEGRTTIMVAH 1030 (1082)
Q Consensus 977 GQkQrlaLARAll~~p~--ILiLDEpTS~LD~~te~~I~~~L~~~~~~~TvI~IsH 1030 (1082)
...+-..+++.+++++. |+....++..........+.+.+.. ...+|++++++
T Consensus 153 ~~~~~~~~~~~yi~~~~~~il~v~~~~~~~~~~~~~~~~~~~~~-~~~r~i~Vitk 207 (306)
T d1jwyb_ 153 IEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEVDP-EGKRTIGVITK 207 (306)
T ss_dssp SHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHHHCS-SCSSEEEEEEC
T ss_pred HHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHCC-CCCEEEEEEEC
T ss_conf 89999999999982777516876325631003499999997386-78858999820
|
| >d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoE (RND3) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=80.93 E-value=0.93 Score=18.17 Aligned_cols=21 Identities=24% Similarity=0.531 Sum_probs=17.8
Q ss_pred EEEEECCCCCCHHHHHHHHHH
Q ss_conf 999984998808999999970
Q 001411 235 TFAFVGPSGSGKSTIISMVQR 255 (1082)
Q Consensus 235 ~~~ivG~sGsGKSTll~~l~g 255 (1082)
.+.++|.+|+|||||++-+..
T Consensus 4 KivliG~~~vGKTsli~r~~~ 24 (179)
T d1m7ba_ 4 KIVVVGDSQCGKTALLHVFAK 24 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999598999999972
|
| >d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-33b species: Mouse (Mus musculus) [TaxId: 10090]
Probab=80.86 E-value=0.57 Score=19.92 Aligned_cols=21 Identities=19% Similarity=0.279 Sum_probs=18.2
Q ss_pred EEEEECCCCCCHHHHHHHHHH
Q ss_conf 999984998808999999970
Q 001411 235 TFAFVGPSGSGKSTIISMVQR 255 (1082)
Q Consensus 235 ~~~ivG~sGsGKSTll~~l~g 255 (1082)
.++++|..|+|||||++-+..
T Consensus 4 Kv~liG~~~vGKTsLl~~~~~ 24 (165)
T d1z06a1 4 KIIVIGDSNVGKTCLTYRFCA 24 (165)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999298999999973
|
| >d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=80.65 E-value=0.95 Score=18.10 Aligned_cols=23 Identities=26% Similarity=0.343 Sum_probs=21.0
Q ss_pred EEEEECCCCCCHHHHHHHHHHCC
Q ss_conf 99998499880899999997078
Q 001411 235 TFAFVGPSGSGKSTIISMVQRLY 257 (1082)
Q Consensus 235 ~~~ivG~sGsGKSTll~~l~g~~ 257 (1082)
.++++|...||||||+++|+|.-
T Consensus 28 ~ivvvG~~SsGKSsliNaLlg~~ 50 (299)
T d2akab1 28 QIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 69997689897999999996898
|
| >d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=80.39 E-value=0.58 Score=19.89 Aligned_cols=55 Identities=18% Similarity=0.160 Sum_probs=31.3
Q ss_pred CHHHHHHHHHHHHHCCCCC--EEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEC
Q ss_conf 9249999999999703998--7785177789897989999999998618964999806
Q 001411 975 SGGQKQRVAIARAILKNPS--ILLLDEATSALDTASENLIQEALDKLMEGRTTIMVAH 1030 (1082)
Q Consensus 975 SgGQkQrlaLARAll~~p~--ILiLDEpTS~LD~~te~~I~~~L~~~~~~~TvI~IsH 1030 (1082)
.....+-.++++.++.++. |+.+..++..+.......+.+.+.. ...++++++++
T Consensus 145 ~~~~~~i~~~~~~y~~~~~~~il~v~~a~~~~~~~~~~~~~~~~~~-~~~r~i~Vltk 201 (299)
T d2akab1 145 PDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKIAKEVDP-QGQRTIGVITK 201 (299)
T ss_dssp TTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHHHHHHHCT-TCSSEEEEEEC
T ss_pred HHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHCC-CCCCEEEEEEC
T ss_conf 1479999999999862756035664034542112599999997386-77813667702
|
| >d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Papillomavirus large T antigen helicase domain species: Simian virus 40 [TaxId: 10633]
Probab=80.34 E-value=0.52 Score=20.32 Aligned_cols=30 Identities=27% Similarity=0.495 Sum_probs=26.3
Q ss_pred EEECCCEEEEECCCCCCHHHHHHHHHHCCC
Q ss_conf 874898999984998808999999970788
Q 001411 229 SVDAGKTFAFVGPSGSGKSTIISMVQRLYE 258 (1082)
Q Consensus 229 ~i~~G~~~~ivG~sGsGKSTll~~l~g~~~ 258 (1082)
.++++..+.+.||.|+|||++.+.+++++.
T Consensus 150 ~~~~~~~~~~~g~~~~gk~~~~~~~~~~~~ 179 (362)
T d1svma_ 150 NIPKKRYWLFKGPIDSGKTTLAAALLELCG 179 (362)
T ss_dssp CCTTCCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 899767699989999888999999999859
|
| >d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab14 species: Human (Homo sapiens) [TaxId: 9606]
Probab=80.30 E-value=0.62 Score=19.63 Aligned_cols=22 Identities=23% Similarity=0.499 Sum_probs=18.6
Q ss_pred EEEEECCCCCCHHHHHHHHHHC
Q ss_conf 9999849988089999999707
Q 001411 235 TFAFVGPSGSGKSTIISMVQRL 256 (1082)
Q Consensus 235 ~~~ivG~sGsGKSTll~~l~g~ 256 (1082)
.++++|.+|+|||||++-+.+.
T Consensus 6 KivlvG~~~vGKTsli~~~~~~ 27 (166)
T d1z0fa1 6 KYIIIGDMGVGKSCLLHQFTEK 27 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999994989999999729
|
| >d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoA species: Human (Homo sapiens) [TaxId: 9606]
Probab=80.21 E-value=0.6 Score=19.75 Aligned_cols=22 Identities=18% Similarity=0.401 Sum_probs=19.0
Q ss_pred EEEEECCCCCCHHHHHHHHHHC
Q ss_conf 9999849988089999999707
Q 001411 235 TFAFVGPSGSGKSTIISMVQRL 256 (1082)
Q Consensus 235 ~~~ivG~sGsGKSTll~~l~g~ 256 (1082)
.+.++|.+|+|||||++-+.+-
T Consensus 4 KivvvG~~~vGKTsLi~~~~~~ 25 (177)
T d1kmqa_ 4 KLVIVGDGACGKTCLLIVNSKD 25 (177)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999998993889999999719
|
| >d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab18 species: Human (Homo sapiens) [TaxId: 9606]
Probab=80.20 E-value=0.63 Score=19.59 Aligned_cols=22 Identities=27% Similarity=0.440 Sum_probs=18.9
Q ss_pred EEEEECCCCCCHHHHHHHHHHC
Q ss_conf 9999849988089999999707
Q 001411 235 TFAFVGPSGSGKSTIISMVQRL 256 (1082)
Q Consensus 235 ~~~ivG~sGsGKSTll~~l~g~ 256 (1082)
.++++|..|+|||||++-+.+-
T Consensus 9 Ki~vvG~~~vGKTsli~~l~~~ 30 (177)
T d1x3sa1 9 KILIIGESGVGKSSLLLRFTDD 30 (177)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 8999998990889999999719
|
| >d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Ytp1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=80.17 E-value=0.61 Score=19.73 Aligned_cols=21 Identities=29% Similarity=0.457 Sum_probs=18.5
Q ss_pred EEEECCCCCCHHHHHHHHHHC
Q ss_conf 999849988089999999707
Q 001411 236 FAFVGPSGSGKSTIISMVQRL 256 (1082)
Q Consensus 236 ~~ivG~sGsGKSTll~~l~g~ 256 (1082)
++++|+.|+|||||++-+.+-
T Consensus 9 ivvvG~~~vGKTsli~~l~~~ 29 (194)
T d2bcgy1 9 LLLIGNSGVGKSCLLLRFSDD 29 (194)
T ss_dssp EEEEESTTSSHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999999990989999999619
|
| >d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab4a species: Human (Homo sapiens) [TaxId: 9606]
Probab=80.16 E-value=0.61 Score=19.73 Aligned_cols=21 Identities=29% Similarity=0.612 Sum_probs=18.5
Q ss_pred EEEEECCCCCCHHHHHHHHHH
Q ss_conf 999984998808999999970
Q 001411 235 TFAFVGPSGSGKSTIISMVQR 255 (1082)
Q Consensus 235 ~~~ivG~sGsGKSTll~~l~g 255 (1082)
.++++|..|+|||||++-+.+
T Consensus 7 KI~lvG~~~vGKTsll~~~~~ 27 (174)
T d2bmea1 7 KFLVIGNAGTGKSCLLHQFIE 27 (174)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999099999999970
|
| >d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyguanosine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=80.08 E-value=0.59 Score=19.83 Aligned_cols=26 Identities=23% Similarity=0.508 Sum_probs=22.5
Q ss_pred CEEEEECCCCCCHHHHHHHHHHCCCC
Q ss_conf 89999849988089999999707889
Q 001411 234 KTFAFVGPSGSGKSTIISMVQRLYEP 259 (1082)
Q Consensus 234 ~~~~ivG~sGsGKSTll~~l~g~~~~ 259 (1082)
++++|-|.-||||||+++.|...+..
T Consensus 3 k~IviEG~~GsGKST~~~~L~~~l~~ 28 (241)
T d2ocpa1 3 RRLSIEGNIAVGKSTFVKLLTKTYPE 28 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHCTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 19999899888599999999998730
|
| >d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap2a species: Human (Homo sapiens) [TaxId: 9606]
Probab=80.07 E-value=0.98 Score=17.96 Aligned_cols=21 Identities=29% Similarity=0.520 Sum_probs=18.9
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 899983899977889998813
Q 001411 865 SLAVVGQSGSGKSTVISLVMR 885 (1082)
Q Consensus 865 ~iaIvG~SGsGKSTL~~lL~g 885 (1082)
++.++|.+|+|||||++-+.+
T Consensus 5 Ki~lvG~~~vGKTsLi~r~~~ 25 (167)
T d1kaoa_ 5 KVVVLGSGGVGKSALTVQFVT 25 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999899399999999971
|
| >d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab27b species: Human (Homo sapiens) [TaxId: 9606]
Probab=80.07 E-value=0.72 Score=19.09 Aligned_cols=21 Identities=33% Similarity=0.488 Sum_probs=18.9
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 899983899977889998813
Q 001411 865 SLAVVGQSGSGKSTVISLVMR 885 (1082)
Q Consensus 865 ~iaIvG~SGsGKSTL~~lL~g 885 (1082)
+++++|++|+|||||++-+.+
T Consensus 7 Ki~ivG~~~vGKTsLi~~l~~ 27 (186)
T d2f7sa1 7 KLLALGDSGVGKTTFLYRYTD 27 (186)
T ss_dssp EEEEESCTTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHC
T ss_conf 999999999198999999961
|
| >d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras species: Human (Homo sapiens) [TaxId: 9606]
Probab=80.02 E-value=0.61 Score=19.70 Aligned_cols=22 Identities=27% Similarity=0.400 Sum_probs=18.5
Q ss_pred EEEEECCCCCCHHHHHHHHHHC
Q ss_conf 9999849988089999999707
Q 001411 235 TFAFVGPSGSGKSTIISMVQRL 256 (1082)
Q Consensus 235 ~~~ivG~sGsGKSTll~~l~g~ 256 (1082)
.++++|..|+|||||++-+.+-
T Consensus 8 Kv~lvG~~~vGKTsLi~r~~~~ 29 (173)
T d2fn4a1 8 KLVVVGGGGVGKSALTIQFIQS 29 (173)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999997996989999999739
|