Citrus Sinensis ID: 001415

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030------1040------1050------1060------1070------1080--
Protein Sequence
MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDDVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDKHDRAKAVEILVKDLKVFSTFNEELFKEITQLLTLENFRENEQLSKYGDTKSARSIMLVELKKLIEANPLFRDKLQFPNLKNSRLRTLINQSLNWQHQLCKNPRPNPDIKTLFVDHTCGQPNGARAPSPANNPLLGSLPKAGVFPPLGAHGPFQPTPAPVPTPLAGWMSNPPTVTHPAVSGGAIGLGSPSIPAAALKHPRTPPTNPSVDYPSGDSDHLSKRTRPIGISDEINLPVNVLPVSFTGHSHSHSHSQAFSTPEDLPKTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESEGKWGVPPPVDNGSTSSMPATPPVGGSGSDQAQR
Secondary Structure (PSIPRED)
cccHHHHHHHHHHHHccccHHHHHHHHHHHccccEEEHHHHHHHHHcccHHHHHHHHccccccccccEEEEEHHHHHHHHHHHHHccccHHHHHHHHHHcccccccccHHHHHHHHEEEEEccccccccccccccHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHcccccccccccEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHccccccccccccccEEEEEEEEcccccEEEEcccccccccccccEEEEccccccEEEEEEcccccEEEEEEcccccEEEEEcccccEEEEEEEEEEEcccccccccccccccccccEEEEEEcccccEEEEEEccccEEEEEcccccEEEccEEEEcccccEEEEEEcccccEEEEEEEEcccEEEEEEcccccEEEEcccccccEEEEEccccccccEEEEEEccccEEEEEcccccEEEEEccccccEEEEEEcccccEEEEEEccccEEEEEEcccccEEEEEEccccEEEEEccccEEEEEEEcccccccccEEEEcccccEEEEEEccccEEEEEcccccEEEEEccccccccEEEccccccccEEEEEEccccEEEEEcccEEEEEcccccccccccccccccccccccEEEEEEcccccEEEEEEcccEEEEEEccccccccccccccccccEEEEcccccEEEcccccccccccEEEEEEcccccEEEEEEcccEEEEEcccccEEEEEccccccEEEEEEccccccEEEEEEccccEEEEEccccEEEEEcccccccEEEEEEcccccEEEEEEccccEEEEEcccccccccEEEEcccccccccccccEEEEcccccEEEEEEcccEEEEEcccccEEEEEccccccccEEEEEEcccccEEEEEEccccEEEEEcccccEEEEEcccccccccccccccccEEEEEccccccEEEEEEccccEEEEccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHHHHHHcHHHHHHHHHHHHHHcccEEcHHHHHHHHHcccHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHccccHHHcccccccHHHHHHHHHHHHHHHHHHHccccccccccEEEEcccccccccccccccccccccccccccccccccccccccccccccccccHHccccccccccccccccccccccccccHHHHHccccccccccccccccccHHHHHHHccccccccccEEEEEEEcccccccEEEccccccEEEEEcccccEEEEEcccccEEEEEEcccccEEEEEEccccEEEEEEEccccEEEEcEEEEEEcccccccHHHHHcccccccEEEEEEcccccEEEEEccccEEEEEEcccccEEEEEEEEccccccEEEEEEcccccEEEEEEcccccEEEEEEcccccEEEEEEcccccEEEEEEcccccccEEEEEccccEEEEEEcccccEEEEEEcccccEEEEEEcccccEEEEcccccEEEEEEEcccccEEEEEccccEEEEEEcccccEEEEEEcccccccEEEEEEcccccEEEEEccccEEEEEEcccccEEEEEcccccccccccccccccccEEEEEEcccccEEEEcccccEEEEEEcccccEEEEEEcccccccccEEEEEEcccccEEEEEccccEEEEEEcccccEEEEEEcccccEEEEEccccccEEEEEEEcccccccEEEEEEcccccEEEEEcccEEEEEEcccccEEEEEccccccEEEEEEccccccEEEEEccccEEEEEEcccccEEEEEEcccccEEEEEEcccccEEEEEccccEEEEEEcccccEEEEEEEEEccccccccccEEEEEEcccccEEEEEcccEEEEEEcccccEEEEEEcccccccEEEEEEcccccEEEEEccccEEEEEEcccccEEEEEccccccEEEEEcccccEEEEEEEcccccEEEEEccccEEEEEEccccccEEEEccccccccEEEccccccccccccccccc
Coil and Loop (DISEMBL)
MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFedevhngnwdDVEKYLSGftkvddnrysmKIFFEIRKQKYLEALDKHDRAKAVEILVKDLKVFSTFNEELFKEITQLLTLENfreneqlskygdtksARSIMLVELKKLieanplfrdklqfpnlknsRLRTLINQSLNWQHqlcknprpnpdiktlfvdhtcgqpngarapspannpllgslpkagvfpplgahgpfqptpapvptplagwmsnpptvthpavsggaiglgspsipaaalkhprtpptnpsvdypsgdsdhlskrtrpigisdeinlpvnvlpvsftghshshshsqafstpedlpktvtrtlnqgsspmsmdfhpVQQTLLLVGtnvgdiglwevgsrerlvlrnfkvwdlgacsmplqaalvkdpgvsvnrviwspdgslfgvAYSRHIVQIYSyhggdevrQHLEidahvggvndiafshpnkqlcvitcgddktiKVWDATngakqyifegheapvysvcphhkeNIQFIFSTALDGKIKAWLYDnlgsrvdyeapgrwcttmaysadgtrtyqgfrkrslgvvqfdttknrflaagddfsikfwDMDSVQLLTSIdadgglpasprirfnkdgclLAVSTNDNGIKILATSDGIRLLRTFENLAydasrtsenskngdvrsladvkpriteesndkSKVWKLtelsepnqcrslrlpenlrATKISRLIFTNSGNAILALASNAIHLLWKWQrternssgkatasvapqlwqppsgimmtndvtdsnpeeavpcfalskndsyvmsasggkislfnmmtfktmatfmppppaatflafhpqdnniiaigmddssiqIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVssgadsqlcvwssdgwekqknrflqiptgrtptaqsdtrvqfhQDQIHFLVVHETQLAIFETTKLEcvkqwvpressapithatfscdsqLVYACFLDATVCVFSAANLKLrcrinpsaylpagvsssnvhplviaahpqepnefalglsdggvhvfeplesegkwgvpppvdngstssmpatppvggsgsdqaqr
Flexible Loop (DISEMBL)
MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDDVEKYLSGftkvddnrysMKIFFEIRKQKYLEALDKHDRAKAVEILVKDLKVFSTFNEELFKEITQLLTLENFRENeqlskygdtksaRSIMLVELKKLIEANPLFRDKLQFPNLKNSRLRTLINQSLNWQHQLCKNPRPNPDIKTLFVDHTCGQPNGARAPSPANNPLLGSLPKAGVFPPLGAHGPFQPTPAPVPTPLAGWMSNPPTVTHPAVSGGAIGLGSPSIPAAALKHPRTPPTNPSVDYPSGDSDHLSKRTRPIGISDEINLPVNVLPVSFTGHSHSHSHSqafstpedlpkTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGsrvdyeapgrwCTTMAYSADGTRTYQGFRKrslgvvqfdttKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAydasrtsenskngdvrsladvkpriteesndkskvwkltelsepnqcrslrlpeNLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNssgkatasvapqlwqppsgIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESEGKWGVPPPVDNGstssmpatppvggsgsdqaqr
Low Complexity Region (SEG)
MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDDVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDKHDRAKAVEILVKDLKVFSTFNEELFKEITQLLTLENFRENEQLSKYGDTKSARSIMLVELKKLIEANPLFRDKLQFPNLKNSRLRTLINQSLNWQHQLCKNPRPNPDIKTLFVDHTCGQPNGARAPSPANNPLLGSLPKAGVFPPLGAHGpfqptpapvptpLAGWMSNPPTVTHPAVSGGAIGLGSPSIPAAALKHPRTPPTNPSVDYPSGDSDHLSKRTRPIGISDEINLPVNVLPVSFTGhshshshsQAFSTPEDLPKTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNmmtfktmatfmppppaatflafHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESEGKWGVPPPVDNGSTSSMPATPPVGGSGSDQAQR
Disordered region (IsUnstruct)
******ELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDDVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDKHDRAKAVEILVKDLKVFSTFNEELFKEITQLLTLENFRENEQLSKYGDTKSARSIMLVELKKLIEANPLFRDKLQFPNLKNSRLRTLINQSLNWQHQLCKNPR*NPDIKTLFVDHTC***************************************************************************************************************EINLPVNVLPVSF*************************************FHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAY*************************************************RLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQR**************************************VPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIP**********TRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHP***NEFALGLSDGGVHVFE**************************************
Disordered Region (DISOPRED)
****SRE*VFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDDVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDKHDRAKAVEILVKDLKVFSTFNEELFKEITQLLTLENFRENEQLSK*****SARSIMLVELKKLIEANPLFRDKLQFPNLKNSRLRTLINQSLNWQHQLCKNPRPNPDIKTLFVDHTCGQPNG*RAPSPANNPLLGSLPKAGVFPPLGAHGPFQPT********************************************TPPTNPSVDYPSGDSDHLSKRTRPIGISDEINLPVNVLPVSFTGHSHSHSHSQAFSTPEDLPKTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESEGKWGVPP**************************
Disordered Region (DISEMBL)
MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDDVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDKHDRAKAVEILVKDLKVFSTFNEELFKEITQLLTLENFRENEQLSKYGDTKSARSIMLVELKKLIEANPLFRDKLQFPNLKNSRLRTLINQSLNWQHQLCKNPRPNPDIKTLFVDHTCGQPNGARAPSPANNPLLGSLPKAGVFPPLGAHGPFQPTPAPVPTPLAGWMSNPPTVTHPAVSGGAIGLGSPSIPAAALKHPRTPPTNPSVDYPSGDSDHLSKRTRPIGISDEINLPVNVLPVSFT****************DLPKTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDAS***********RSLADVKPRI********KVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRT************APQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESEGKWGVPPPVDNGSTSSM****************
Disordered Region (DISPRO)
**SLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDDVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDKHDRAKAVEILVKDLKVFSTFNEELFKEITQLLTLENFRENEQLSKYGDTKSARSIMLVELKKLIEANPLFRDKLQFPNLKNSRLRTLINQSLNWQHQLCKNPRPNPDIKTLFVDHTCGQPNGARAPSPANNPLLGSLPKAGVFPPLGAHGPFQPTPAPVPTPLAGWMSNPPTVTHPAVSGGAIGLGSPSIPAAALKHPRTPPTNPSVDYPSGDSDHLSKRTRPIGISDEINLPVNVLPVSFTGHSHSHSHSQAFSTPEDLPKTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESEGKWGVPPPVDNGSTSSM****************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDDVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDKHDRAKAVEILVKDLKVFSTFNEELFKEITQLLTLENFRENEQLSKYGDTKSARSIMLVELKKLIEANPLFRDKLQFPNLKNSRLRTLINQSLNWQHQLCKNPRPNPDIKTLFVDHTCGQPNGARAPSPANNPLLGSLPKAGVFPPLGAHGPFQPTPAPVPTPLAGWMSNPPTVTHPAVSGGAIGLGSPSIPAAALKHPRTPPTNPSVDYPSGDSDHLSKRTRPIGISDEINLPVNVLPVSFTGHSHSHSHSQAFSTPEDLPKTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESEGKWGVPPPVDNGSTSSMPATPPVGGSGSDQAQR
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	1082	2.2.26 [Sep-21-2011]
Q94AI7	1131	Protein TOPLESS OS=Arabid	yes	no	0.997	0.954	0.813	0.0
Q0WV90	1120	Topless-related protein 1	no	no	0.997	0.963	0.815	0.0
Q27GK7	1135	Topless-related protein 4	no	no	0.988	0.942	0.678	0.0
Q9LRZ0	1131	Topless-related protein 2	no	no	0.952	0.911	0.612	0.0
Q84JM4	1108	Topless-related protein 3	no	no	0.963	0.941	0.596	0.0
Q00808	1356	Vegetative incompatibilit	yes	no	0.274	0.219	0.280	1e-18
Q8YTC2	1258	Uncharacterized WD repeat	no	no	0.379	0.326	0.229	5e-15
Q8YRI1	1526	Uncharacterized WD repeat	no	no	0.416	0.295	0.223	2e-14
Q54KL5	335	WD repeat-containing prot	yes	no	0.191	0.617	0.254	4e-13
Q8YV57	1683	Uncharacterized WD repeat	no	no	0.367	0.236	0.217	1e-11

>sp|Q94AI7|TPL_ARATH Protein TOPLESS OS=Arabidopsis thaliana GN=TPL PE=1 SV=1

 Score = 1924 bits (4985), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 922/1134 (81%), Positives = 1001/1134 (88%), Gaps = 55/1134 (4%)

Query: 1    MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDDVEKYLSGF 60
            MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWD+VEKYLSGF
Sbjct: 1    MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDEVEKYLSGF 60

Query: 61   TKVDDNRYSMKIFFEIRKQKYLEALDKHDRAKAVEILVKDLKVFSTFNEELFKEITQLLT 120
            TKVDDNRYSMKIFFEIRKQKYLEALDKHDR KAV+ILVKDLKVFSTFNEELFKEITQLLT
Sbjct: 61   TKVDDNRYSMKIFFEIRKQKYLEALDKHDRPKAVDILVKDLKVFSTFNEELFKEITQLLT 120

Query: 121  LENFRENEQLSKYGDTKSARSIMLVELKKLIEANPLFRDKLQFPNLKNSRLRTLINQSLN 180
            LENFRENEQLSKYGDTKSAR+IMLVELKKLIEANPLFRDKLQFP L+NSRLRTLINQSLN
Sbjct: 121  LENFRENEQLSKYGDTKSARAIMLVELKKLIEANPLFRDKLQFPTLRNSRLRTLINQSLN 180

Query: 181  WQHQLCKNPRPNPDIKTLFVDHTCGQPNGARAPSPANNPLLGSLPKAGVFPPLGAHGPFQ 240
            WQHQLCKNPRPNPDIKTLFVDH+CG PNGARAPSP NNPLLG +PKAG FPPLGAHGPFQ
Sbjct: 181  WQHQLCKNPRPNPDIKTLFVDHSCGPPNGARAPSPVNNPLLGGIPKAGGFPPLGAHGPFQ 240

Query: 241  PTPAPVPTPLAGWMSNPPTVTHPAVSGGAIGLGSPSIPAAALKHPRTPPTNPSVDYPSGD 300
            PT +PVPTPLAGWMS+P +V HPAVS GAI LG PSIPAA LKHPRTPPTN S+DYPS D
Sbjct: 241  PTASPVPTPLAGWMSSPSSVPHPAVSAGAIALGGPSIPAA-LKHPRTPPTNASLDYPSAD 299

Query: 301  SDHLSKRTRPIGISDEINLPVNVLPVSFTGHSHSHSHSQAFSTPEDLPKTVTRTLNQGSS 360
            S+H+SKRTRP+GISDE+NL VN+LP+SF+G +H HS   AF  P+DLPKTV RTL+QGSS
Sbjct: 300  SEHVSKRTRPMGISDEVNLGVNMLPMSFSGQAHGHS--PAFKAPDDLPKTVARTLSQGSS 357

Query: 361  PMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPG 420
            PMSMDFHP++QTLLLVGTNVGDIGLWEVGSRERLV + FKVWDL  CSMPLQAALVK+P 
Sbjct: 358  PMSMDFHPIKQTLLLVGTNVGDIGLWEVGSRERLVQKTFKVWDLSKCSMPLQAALVKEPV 417

Query: 421  VSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQL 480
            VSVNRVIWSPDGSLFGVAYSRHIVQ+YSYHGG+++RQHLEIDAHVGGVNDI+FS PNKQL
Sbjct: 418  VSVNRVIWSPDGSLFGVAYSRHIVQLYSYHGGEDMRQHLEIDAHVGGVNDISFSTPNKQL 477

Query: 481  CVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLY 540
            CVITCGDDKTIKVWDA  G K++ FEGHEAPVYSVCPH+KENIQFIFSTALDGKIKAWLY
Sbjct: 478  CVITCGDDKTIKVWDAATGVKRHTFEGHEAPVYSVCPHYKENIQFIFSTALDGKIKAWLY 537

Query: 541  DNLGSRVDYEAPGRWCTTMAYSADGTR--------------------------TYQGFRK 574
            DN+GSRVDY+APGRWCTTMAYSADGTR                          TYQGF K
Sbjct: 538  DNMGSRVDYDAPGRWCTTMAYSADGTRLFSCGTSKDGESFIVEWNESEGAVKRTYQGFHK 597

Query: 575  RSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLA 634
            RSLGVVQFDTTKNR+LAAGDDFSIKFWDMD+VQLLT+ID DGGL ASPRIRFNK+G LLA
Sbjct: 598  RSLGVVQFDTTKNRYLAAGDDFSIKFWDMDAVQLLTAIDGDGGLQASPRIRFNKEGSLLA 657

Query: 635  VSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENS----------------------- 671
            VS N+N IKI+A SDG+RLL TFEN++ ++S+ + NS                       
Sbjct: 658  VSGNENVIKIMANSDGLRLLHTFENISSESSKPAINSIAAAAAAAATSAGHADRSANVVS 717

Query: 672  ---KNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFT 728
                NGD R++ DVKP ITEESNDKSK+WKLTE+SEP+QCRSLRLPENLR  KISRLIFT
Sbjct: 718  IQGMNGDSRNMVDVKPVITEESNDKSKIWKLTEVSEPSQCRSLRLPENLRVAKISRLIFT 777

Query: 729  NSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEA 788
            NSGNAILALASNAIHLLWKWQR ERN++GKATAS+ PQ WQP SGI+MTNDV ++NPEEA
Sbjct: 778  NSGNAILALASNAIHLLWKWQRNERNATGKATASLPPQQWQPASGILMTNDVAETNPEEA 837

Query: 789  VPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMD 848
            VPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMD
Sbjct: 838  VPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMD 897

Query: 849  DSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNR 908
            DS+IQIYNVRVDEVKSKLKGHSKRITGLAFS+ LNVLVSSGAD+QLCVW++DGWEKQ+++
Sbjct: 898  DSTIQIYNVRVDEVKSKLKGHSKRITGLAFSNVLNVLVSSGADAQLCVWNTDGWEKQRSK 957

Query: 909  FLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPRESSAPITH 968
             L +P GR  +A SDTRVQFHQDQ HFLVVHETQLAI+ETTKLEC+KQW  RES APITH
Sbjct: 958  VLPLPQGRPNSAPSDTRVQFHQDQAHFLVVHETQLAIYETTKLECMKQWAVRESLAPITH 1017

Query: 969  ATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEP 1028
            ATFSCDSQLVYA F+DATVCVFS+ANL+LRCR+NPSAYLPA +S+SNVHPLVIAAHPQEP
Sbjct: 1018 ATFSCDSQLVYASFMDATVCVFSSANLRLRCRVNPSAYLPASLSNSNVHPLVIAAHPQEP 1077

Query: 1029 NEFALGLSDGGVHVFEPLESEGKWGVPPPVDNGSTSSMPATPPVGGSGSDQAQR 1082
            N FA+GLSDGGVH+FEPLESEGKWGV PP +NGS S  P  P VG S SDQ QR
Sbjct: 1078 NMFAVGLSDGGVHIFEPLESEGKWGVAPPAENGSASGAPTAPSVGASASDQPQR 1131

Transcriptional corepressor. May repress the expression of root-promoting genes in the top half of the embryo to allow proper differentiation of the shoot pole during the transition stage of embryogenesis. Regulates the expression of PLT1 and PLT2. Negative regulator of jasmonate responses. Negative regulator of auxin responses.
Arabidopsis thaliana (taxid: 3702)

>sp|Q0WV90|TPR1_ARATH Topless-related protein 1 OS=Arabidopsis thaliana GN=TPR1 PE=1 SV=3

 Score = 1921 bits (4976), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 916/1123 (81%), Positives = 1003/1123 (89%), Gaps = 44/1123 (3%)

Query: 1    MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDDVEKYLSGF 60
            MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWD+VEKYLSGF
Sbjct: 1    MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDEVEKYLSGF 60

Query: 61   TKVDDNRYSMKIFFEIRKQKYLEALDKHDRAKAVEILVKDLKVFSTFNEELFKEITQLLT 120
            TKVDDNRYSMKIFFEIRKQKYLEALD+HDR KAV+ILVKDLKVFSTFNEELFKEITQLLT
Sbjct: 61   TKVDDNRYSMKIFFEIRKQKYLEALDRHDRPKAVDILVKDLKVFSTFNEELFKEITQLLT 120

Query: 121  LENFRENEQLSKYGDTKSARSIMLVELKKLIEANPLFRDKLQFPNLKNSRLRTLINQSLN 180
            LENFRENEQLSKYGDTKSAR+IMLVELKKLIEANPLFRDKLQFP L+ SRLRTLINQSLN
Sbjct: 121  LENFRENEQLSKYGDTKSARAIMLVELKKLIEANPLFRDKLQFPTLRTSRLRTLINQSLN 180

Query: 181  WQHQLCKNPRPNPDIKTLFVDHTCGQPNGARAPSPANNPLLGSLPKAGVFPPLGAHGPFQ 240
            WQHQLCKNPRPNPDIKTLFVDH+C  PN ARAPSP NNPLLGSLPKA  FPPLGAHGPFQ
Sbjct: 181  WQHQLCKNPRPNPDIKTLFVDHSCRLPNDARAPSPVNNPLLGSLPKAEGFPPLGAHGPFQ 240

Query: 241  PTPAPVPTPLAGWMSNPPTVTHPAVSGGAIGLGSPSIPAAALKHPRTPPTNPSVDYPSGD 300
            PTP+PVPTPLAGWMS+P +V HPAVSGG I LG+PSI  AALKHPRTPP+N +VDYPSGD
Sbjct: 241  PTPSPVPTPLAGWMSSPSSVPHPAVSGGPIALGAPSI-QAALKHPRTPPSNSAVDYPSGD 299

Query: 301  SDHLSKRTRPIGISDEINLPVNVLPVSFTGHSHSHSHSQAFSTPEDLPKTVTRTLNQGSS 360
            SDH+SKRTRP+GISDE++L VN+LP++F G +H H+  Q F  P+DLPKTV RTL+QGSS
Sbjct: 300  SDHVSKRTRPMGISDEVSLGVNMLPMTFPGQAHGHN--QTFKAPDDLPKTVARTLSQGSS 357

Query: 361  PMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPG 420
            PMSMDFHP++QTLLLVGTNVGDIGLWEVGSRERLV + FKVWDL  CSMPLQAALVK+P 
Sbjct: 358  PMSMDFHPIKQTLLLVGTNVGDIGLWEVGSRERLVQKTFKVWDLSKCSMPLQAALVKEPV 417

Query: 421  VSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQL 480
            VSVNRVIWSPDGSLFGVAYSRHIVQ+YSYHGG+++RQHLEIDAHVGGVNDIAFS PNKQL
Sbjct: 418  VSVNRVIWSPDGSLFGVAYSRHIVQLYSYHGGEDMRQHLEIDAHVGGVNDIAFSTPNKQL 477

Query: 481  CVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLY 540
            CV TCGDDKTIKVWDA  G K+Y FEGHEAPVYS+CPH+KENIQFIFSTALDGKIKAWLY
Sbjct: 478  CVTTCGDDKTIKVWDAATGVKRYTFEGHEAPVYSICPHYKENIQFIFSTALDGKIKAWLY 537

Query: 541  DNLGSRVDYEAPGRWCTTMAYSADGTR--------------------------TYQGFRK 574
            DN+GSRVDYEAPGRWCTTMAYSADGTR                          TYQGF K
Sbjct: 538  DNMGSRVDYEAPGRWCTTMAYSADGTRLFSCGTSKDGESFIVEWNESEGAVKRTYQGFHK 597

Query: 575  RSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLA 634
            RSLGVVQFDTTKNR+LAAGDDFSIKFWDMD++QLLT+IDADGGL ASPRIRFNK+G LLA
Sbjct: 598  RSLGVVQFDTTKNRYLAAGDDFSIKFWDMDTIQLLTAIDADGGLQASPRIRFNKEGSLLA 657

Query: 635  VSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENS---------------KNGDVRSL 679
            VS NDN IK++A SDG+RLL T ENL+ ++S+ + NS                NGD R++
Sbjct: 658  VSANDNMIKVMANSDGLRLLHTVENLSSESSKPAINSIPMVERPASVVSIPGMNGDSRNM 717

Query: 680  ADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALAS 739
             DVKP ITEESNDKSKVWKLTE+ EP+QCRSLRLPEN+R TKISRLIFTNSGNAILALAS
Sbjct: 718  VDVKPVITEESNDKSKVWKLTEVGEPSQCRSLRLPENMRVTKISRLIFTNSGNAILALAS 777

Query: 740  NAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDS 799
            NAIHLLWKWQR +RN++GKATAS+ PQ WQP SGI+MTNDV ++NPEEAVPCFALSKNDS
Sbjct: 778  NAIHLLWKWQRNDRNATGKATASLPPQQWQPASGILMTNDVAETNPEEAVPCFALSKNDS 837

Query: 800  YVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRV 859
            YVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDS+IQIYNVRV
Sbjct: 838  YVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSTIQIYNVRV 897

Query: 860  DEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPT 919
            DEVKSKLKGHSKRITGLAFS+ LNVLVSSGAD+QLCVW++DGWEKQK++ LQIP GR+ +
Sbjct: 898  DEVKSKLKGHSKRITGLAFSNVLNVLVSSGADAQLCVWNTDGWEKQKSKVLQIPQGRSTS 957

Query: 920  AQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVY 979
            + SDTRVQFHQDQ+HFLVVHETQLAI+ETTKLEC+KQW  RES+APITHATFSCDSQL+Y
Sbjct: 958  SLSDTRVQFHQDQVHFLVVHETQLAIYETTKLECMKQWPVRESAAPITHATFSCDSQLIY 1017

Query: 980  ACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGG 1039
              F+DAT+CVFS+ANL+LRCR+NPSAYLPA +S+SNVHPLVIAAHPQE N FA+GLSDGG
Sbjct: 1018 TSFMDATICVFSSANLRLRCRVNPSAYLPASLSNSNVHPLVIAAHPQESNMFAVGLSDGG 1077

Query: 1040 VHVFEPLESEGKWGVPPPVDNGSTSSMPATPPVGGSGSDQAQR 1082
            VH+FEPLESEGKWGV PP +NGS S++ ATP VG S SDQ QR
Sbjct: 1078 VHIFEPLESEGKWGVAPPPENGSASAVTATPSVGASASDQPQR 1120

Transcriptional corepressor. Activates TIR-NB-LRR R protein-mediated immune responses through repression of negative regulators such as CNGC2/DND1. Negative regulator of jasmonate responses.

Arabidopsis thaliana (taxid: 3702)

>sp|Q27GK7|TPR4_ARATH Topless-related protein 4 OS=Arabidopsis thaliana GN=TPR4 PE=1 SV=2

 Score = 1587 bits (4108), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 778/1147 (67%), Positives = 899/1147 (78%), Gaps = 77/1147 (6%)

Query: 1    MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDDVEKYLSGF 60
            MSSLSRELVFLILQFLDEEKFK+TVH+LE+ESGFFFNM+YFED V  G WDDVEKYLSGF
Sbjct: 1    MSSLSRELVFLILQFLDEEKFKDTVHRLEKESGFFFNMRYFEDSVTAGEWDDVEKYLSGF 60

Query: 61   TKVDDNRYSMKIFFEIRKQKYLEALDKHDRAKAVEILVKDLKVFSTFNEELFKEITQLLT 120
            TKVDDNRYSMKIFFEIRKQKYLEALDK D AKAV+ILVK+LKVFSTFNEELFKEIT LLT
Sbjct: 61   TKVDDNRYSMKIFFEIRKQKYLEALDKKDHAKAVDILVKELKVFSTFNEELFKEITMLLT 120

Query: 121  LENFRENEQLSKYGDTKSARSIMLVELKKLIEANPLFRDKLQFPNLKNSRLRTLINQSLN 180
            L NFRENEQLSKYGDTKSAR IML ELKKLIEANPLFRDKLQFP+LKNSRLRTLINQSLN
Sbjct: 121  LTNFRENEQLSKYGDTKSARGIMLGELKKLIEANPLFRDKLQFPSLKNSRLRTLINQSLN 180

Query: 181  WQHQLCKNPRPNPDIKTLFVDHTCGQPNGARAPSPANNPLLGSLPKAGVFPPLGAHGPFQ 240
            WQHQLCKNPRPNPDIKTLFVDHTCG PNGA  PSP  N L+GS+PK G FPPLGAHGPFQ
Sbjct: 181  WQHQLCKNPRPNPDIKTLFVDHTCGHPNGAHTPSPTTNHLMGSVPKVGGFPPLGAHGPFQ 240

Query: 241  PTPAPVPTPLAGWMSNPPTVTHPAVSGGAIGLGSPSIPAAALK--HPRTPPTNP-SVDYP 297
            PTPAP+ T LAGWM N P+V HP VS G IGLG+P+   + LK   PR+PPTN  S+DY 
Sbjct: 241  PTPAPLTTSLAGWMPN-PSVQHPTVSAGPIGLGAPNSAVSMLKRERPRSPPTNSLSMDYQ 299

Query: 298  SGDSDHLSKRTRPIGISDEI-NLPVNVLPVSFTGHSHSHSHSQAFSTPEDLPKTVTRTLN 356
            + DS+ + KR RP GISD + NLPVNVLPV++ G SH+H+    +ST +DLPK V+R L+
Sbjct: 300  TADSESVLKRPRPFGISDGVNNLPVNVLPVTYPGQSHAHA---TYST-DDLPKNVSRILS 355

Query: 357  QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALV 416
            QGS+  SMDFHPVQQT+LLVGTN+GDI +WEVGSRE+LV R+FKVWDL  C++ LQA+L 
Sbjct: 356  QGSAIKSMDFHPVQQTMLLVGTNLGDIAIWEVGSREKLVSRSFKVWDLATCTVNLQASLA 415

Query: 417  KDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHP 476
             +   +VNRV+WSPDG L GVAYS+HIV IYSYHGG+++R HLEIDAH G VND+AFS P
Sbjct: 416  SEYTAAVNRVVWSPDGGLLGVAYSKHIVHIYSYHGGEDLRNHLEIDAHAGNVNDLAFSQP 475

Query: 477  NKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIK 536
            N+QLCV+TCG+DKTIKVWDA  G K + FEGHEAPVYSVCPH KENIQFIFSTA+DGKIK
Sbjct: 476  NQQLCVVTCGEDKTIKVWDAVTGNKLHTFEGHEAPVYSVCPHQKENIQFIFSTAVDGKIK 535

Query: 537  AWLYDNLGSRVDYEAPGRWCTTMAYSADGT--------------------------RTYQ 570
            AWLYDN+GSRVDY+APGR CT+MAY ADGT                          RTY 
Sbjct: 536  AWLYDNMGSRVDYDAPGRSCTSMAYCADGTRLFSCGTSKEGESFIVEWNESEGAVKRTYL 595

Query: 571  GFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDG 630
            G  KRS+GVVQFDT KN+FL AGD+F +KFWDMDSV LL+S  A+GGLP+SP +R NK+G
Sbjct: 596  GLGKRSVGVVQFDTMKNKFLVAGDEFQVKFWDMDSVDLLSSTAAEGGLPSSPCLRINKEG 655

Query: 631  CLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASR------------------------ 666
             LLAVST DNGIKILA ++G R+L +  N   D+SR                        
Sbjct: 656  TLLAVSTTDNGIKILANAEGSRILHSMANRGLDSSRAPPGSVAKGPIVGTFGTPNSSTGM 715

Query: 667  -----------TSENSKNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPE 715
                        S    NGD RSL DVKPRI +++ +KSK WKLTE+SE +Q R+LRLP+
Sbjct: 716  SLSMGERSGPVASVTGLNGDNRSLPDVKPRIADDA-EKSKTWKLTEISERSQLRTLRLPD 774

Query: 716  NLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIM 775
             L   ++ +LI+TNSG AILALA NA H LWKWQ++ERN  GKA ++V PQLWQP SG++
Sbjct: 775  TLLPARVVKLIYTNSGGAILALAENAAHKLWKWQKSERNLLGKANSNVPPQLWQPSSGVL 834

Query: 776  MTNDVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAF 835
            MTND  + N E+ VPCFALSKNDSYVMSASGGKISLFNMMTFKTM TFM PPPAAT LAF
Sbjct: 835  MTNDTREGNKEDVVPCFALSKNDSYVMSASGGKISLFNMMTFKTMTTFMAPPPAATSLAF 894

Query: 836  HPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLC 895
            HPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGH KR+TGLAFS+ LNVLVSSGADSQLC
Sbjct: 895  HPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHQKRVTGLAFSNVLNVLVSSGADSQLC 954

Query: 896  VWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVK 955
            VWS DGWEKQ ++ +QIP+G +P   + TRVQFHQDQIH LVVH +QLAI+E  KLE +K
Sbjct: 955  VWSMDGWEKQASKQIQIPSGHSPNPLAHTRVQFHQDQIHVLVVHASQLAIYEAPKLENMK 1014

Query: 956  QWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSN 1015
            QW+P+ESS  +T A +SCDSQ +YA F D +V + +A  L+L+CRI P++YLP+   SS 
Sbjct: 1015 QWIPKESSGSVTDAVYSCDSQSIYAAFDDGSVSILTATTLQLKCRIGPNSYLPSN-PSSR 1073

Query: 1016 VHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESEGKWGVPPPVDNGSTSSMPATPPVGGS 1075
            V+P  +AAHP EPN+FA+GL+DGGVHV EP   EGKWG+  P +NG+  S+ + P     
Sbjct: 1074 VYPATVAAHPSEPNQFAVGLTDGGVHVIEPPGPEGKWGISAPPENGAGPSVSSAP----- 1128

Query: 1076 GSDQAQR 1082
            GSDQ  R
Sbjct: 1129 GSDQQPR 1135

Transcriptional corepressor. Negative regulator of jasmonate responses.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LRZ0|TPR2_ARATH Topless-related protein 2 OS=Arabidopsis thaliana GN=TPR2 PE=1 SV=2

 Score = 1367 bits (3539), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 687/1122 (61%), Positives = 831/1122 (74%), Gaps = 91/1122 (8%)

Query: 1    MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDDVEKYLSGF 60
            MSSLSRELVFLILQFLDEEKFKE+VHKLEQESGFFFN+KYFE++   G WD+VEKYLSGF
Sbjct: 1    MSSLSRELVFLILQFLDEEKFKESVHKLEQESGFFFNIKYFEEKALAGEWDEVEKYLSGF 60

Query: 61   TKVDDNRYSMKIFFEIRKQKYLEALDKHDRAKAVEILVKDLKVFSTFNEELFKEITQLLT 120
            TKVDDNRYSMKIFFEIRKQKYLEALD++DRAKAVEIL KDLKVF+TFNEEL+KEITQLLT
Sbjct: 61   TKVDDNRYSMKIFFEIRKQKYLEALDRNDRAKAVEILAKDLKVFATFNEELYKEITQLLT 120

Query: 121  LENFRENEQLSKYGDTKSARSIMLVELKKLIEANPLFRDKLQFPNLKNSRLRTLINQSLN 180
            LENFRENEQLSKYGDTKSARSIM  ELKKLIEANPLFR+KL FP+ K SRLRTLINQSLN
Sbjct: 121  LENFRENEQLSKYGDTKSARSIMYTELKKLIEANPLFREKLAFPSFKASRLRTLINQSLN 180

Query: 181  WQHQLCKNPRPNPDIKTLFVDHTCGQPNGARAPSPANNPLLGSLPKAGVFPPLGAH-GPF 239
            WQHQLCKNPRPNPDIKTLF+DH+C   NGARA +P N P + ++ +   F PLG H GPF
Sbjct: 181  WQHQLCKNPRPNPDIKTLFLDHSCSPSNGARALTPVNLP-VAAVARPSNFVPLGVHGGPF 239

Query: 240  QP--TPAPVPTPLAGWMSNP-PTVTHPAVSGGAIGLGSPSIPAAA--LKHPRTPPTNPSV 294
            Q    PAP    LAGWM+NP P+ + P  SG       P  P+    LKHPR P  +  +
Sbjct: 240  QSNPAPAPNANALAGWMANPNPSSSVP--SGVVAASPFPMQPSQVNELKHPRAPSNSLGL 297

Query: 295  -DYPSGDSDHLSKRTRPIGISDEINLPVNVLPVSFTGHSHSHSHSQAFSTPEDLPKTVTR 353
             DY S D + L KR R    S+E+  P             +HSH  A  + +DLP+ V  
Sbjct: 298  MDYQSADHEQLMKRLRSAQTSNEVTYP-------------AHSHPPA--SLDDLPRNVVS 342

Query: 354  TLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQA 413
            T+ QGS  +SMDFHP   TLL VG + G++ LWEVGSRE++V   FK+W++ ACS+  Q 
Sbjct: 343  TIRQGSVVISMDFHPSHHTLLAVGCSSGEVTLWEVGSREKVVTEPFKIWNMAACSVIFQG 402

Query: 414  ALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAF 473
            ++VK+P +SV RV WSPDG+L GV++++H++ +Y+Y G D +RQHLEIDAHVG VND+AF
Sbjct: 403  SIVKEPSISVTRVAWSPDGNLLGVSFTKHLIHVYAYQGSD-LRQHLEIDAHVGCVNDLAF 461

Query: 474  SHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDG 533
            +HPNKQ+CV+TCGDDK IKVWD + G K + FEGHEAPVYS+CPH KENIQFIFSTALDG
Sbjct: 462  AHPNKQMCVVTCGDDKLIKVWDLS-GKKLFTFEGHEAPVYSICPHQKENIQFIFSTALDG 520

Query: 534  KIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGT--------------------------R 567
            KIKAWLYDN+GSRVDY+APG+WCTTM YSADG+                          R
Sbjct: 521  KIKAWLYDNVGSRVDYDAPGQWCTTMLYSADGSRLFSCGTSKEGDSFLVEWNESEGALKR 580

Query: 568  TYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFN 627
            TY GFRK+S GVVQFDTT+NRFLA G+D  IKFW+MD+  LLT ++A+GGLP  PR+RFN
Sbjct: 581  TYLGFRKKSAGVVQFDTTRNRFLAVGEDNQIKFWNMDNTNLLTVVEAEGGLPNLPRLRFN 640

Query: 628  KDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKNGDVRSLADVKPRIT 687
            KDG LLAV+T DNG KILA +DG+R LR FE  +++AS+ S + K       + + P I 
Sbjct: 641  KDGNLLAVTTADNGFKILANTDGLRTLRAFEARSFEASKASIDMKVSTSAMASSISPAIG 700

Query: 688  E--------------------------------ESNDKSKVWKLTELSEPNQCRSLRLPE 715
            +                                +S DKSK  +LTE+ +P QCR + +P+
Sbjct: 701  KIEHMDAGSPARPTPIPNGIEAMSRTMEKPRNLDSVDKSKPLELTEIVDPTQCRQVTMPD 760

Query: 716  NLRA-TKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGI 774
            +  + +K++RL++TNSG  +LAL SN +  LWKW R E+N +GKATASV PQ WQP SG+
Sbjct: 761  SKDSVSKVARLLYTNSGVGVLALGSNGVQRLWKWIRNEQNPTGKATASVTPQHWQPNSGL 820

Query: 775  MMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLA 834
            +M NDV + NPE +VPC ALSKNDSYVMSA GGK+SLFNMMTFK M TFMPPPPA+TFLA
Sbjct: 821  LMANDVPE-NPEGSVPCIALSKNDSYVMSACGGKVSLFNMMTFKVMTTFMPPPPASTFLA 879

Query: 835  FHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQL 894
            FHPQDNNIIAIGM+DSSI IYNVRVDEVK+KLKGH K ITGLAFS ALN+LVSSGAD+QL
Sbjct: 880  FHPQDNNIIAIGMEDSSIHIYNVRVDEVKTKLKGHQKHITGLAFSTALNILVSSGADAQL 939

Query: 895  CVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECV 954
              W++D WEK+K+  +Q+P G+ P    DTRVQFH DQI  LV HETQLAI++ +K+EC+
Sbjct: 940  FFWTADSWEKKKSSAIQLPPGKAPVG--DTRVQFHNDQIQLLVSHETQLAIYDASKMECI 997

Query: 955  KQWVPRES-SAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGV-S 1012
             +WVP+E+ S+PIT A++SC+SQLVYA F D  + VF A +L+LRCRI PSAY+P    +
Sbjct: 998  HKWVPQEALSSPITSASYSCNSQLVYASFADGNIAVFDAESLRLRCRIAPSAYMPQPTPN 1057

Query: 1013 SSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESEGKWGV 1054
            S+ + P VI AHPQEPN+ A+GLSDG V V EP E   +WGV
Sbjct: 1058 SAPIFPQVITAHPQEPNQLAVGLSDGSVKVIEPSELSRRWGV 1099

Transcriptional corepressor. Negative regulator of jasmonate responses.

Arabidopsis thaliana (taxid: 3702)

>sp|Q84JM4|TPR3_ARATH Topless-related protein 3 OS=Arabidopsis thaliana GN=TPR3 PE=1 SV=1

 Score = 1333 bits (3449), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 669/1121 (59%), Positives = 818/1121 (72%), Gaps = 78/1121 (6%)

Query: 1    MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDDVEKYLSGF 60
            MSSLSRELVFLILQFL+EEKFKE+VH+LE+ESGFFFN KYF+++V  G WDDVE YLSGF
Sbjct: 1    MSSLSRELVFLILQFLEEEKFKESVHRLEKESGFFFNTKYFDEKVLAGEWDDVETYLSGF 60

Query: 61   TKVDDNRYSMKIFFEIRKQKYLEALDKHDRAKAVEILVKDLKVFSTFNEELFKEITQLLT 120
            TKVDDNRYSMKIFFEIRKQKYLEALD+ ++AKAVEILV+DL+VFSTFNEEL+KEITQLLT
Sbjct: 61   TKVDDNRYSMKIFFEIRKQKYLEALDRQEKAKAVEILVQDLRVFSTFNEELYKEITQLLT 120

Query: 121  LENFRENEQLSKYGDTKSARSIMLVELKKLIEANPLFRDKLQFPNLKNSRLRTLINQSLN 180
            L+NFRENEQLSKYGDTK+AR IML ELKKLIEANPLFRDKL FP L++SRLRTLINQSLN
Sbjct: 121  LQNFRENEQLSKYGDTKTARGIMLGELKKLIEANPLFRDKLMFPTLRSSRLRTLINQSLN 180

Query: 181  WQHQLCKNPRPNPDIKTLFVDHTCGQPNGARAPSPANNPLLGSLPKAGVFPPLGAH-GPF 239
            WQHQLCKNPRPNPDIKTLF DHTC  PNG  APS  N P+  +L K   +P LG H    
Sbjct: 181  WQHQLCKNPRPNPDIKTLFTDHTCTLPNGPLAPSAVNQPVT-TLTKPAAYPSLGPHVPFP 239

Query: 240  QPTPAPVPTPLAGWM--SNPPTVTHPAVSGGAIGLGSPSIPAAALKHPRTPPTNPS-VDY 296
                A     LA WM  ++  +    AV   A+ +  P    + LK PRTPP  P  VDY
Sbjct: 240  PGPAAANAGALASWMAAASGASAVQAAVVTPAL-MPQPQNQMSILKRPRTPPATPGIVDY 298

Query: 297  PSGDSDHLSKRTRPIGISDEINLPVNVLPVSFTGHSHSHSHSQAFSTPEDLPKTVTRTLN 356
             + D + L KR RP    +E+  P                  QA  + EDLP      L+
Sbjct: 299  QNPDHE-LMKRLRPAPSVEEVTYPA--------------PRQQAPWSLEDLPTKAALALH 343

Query: 357  QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALV 416
            QGS+  SM+F+P+Q TLLLVG+  G+I LWE+ +RERLV R FK+WD+  CS   QA + 
Sbjct: 344  QGSTVTSMEFYPMQNTLLLVGSATGEITLWELAARERLVSRPFKIWDMSNCSHQFQALIA 403

Query: 417  KDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHP 476
            K+  +SV RV WSPDG+  GVA+++H++Q+Y++ G +++RQH EIDAHVG VND+AF++P
Sbjct: 404  KETPISVTRVAWSPDGNFIGVAFTKHLIQLYAFSGPNDLRQHTEIDAHVGAVNDLAFANP 463

Query: 477  NKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIK 536
            N+QLCVITCGDDK IKVWD + G K + FEGH+APVYS+CPH+KENIQFIFSTA+DGKIK
Sbjct: 464  NRQLCVITCGDDKLIKVWDVS-GRKHFTFEGHDAPVYSICPHYKENIQFIFSTAIDGKIK 522

Query: 537  AWLYDNLGSRVDYEAPGRWCTTMAYSADGT--------------------------RTYQ 570
            AWLYDNLGSRVDY+APG+WCT M YSADGT                          RTY+
Sbjct: 523  AWLYDNLGSRVDYDAPGKWCTRMLYSADGTRLFSCGTSKDGDSFLVEWNESEGSIKRTYK 582

Query: 571  GFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDG 630
             F+K+  GVVQFDT+KN FLA G+D  IKFWDM+++ +LTS DA+GGLPA P +RFNKDG
Sbjct: 583  EFQKKLAGVVQFDTSKNHFLAVGEDGQIKFWDMNNINVLTSTDAEGGLPALPHLRFNKDG 642

Query: 631  CLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKNGDVRSLADVKPRI---- 686
             LLAV+T DNG KILA   G R LR  E  A +  RT  + K      +A V  ++    
Sbjct: 643  NLLAVTTADNGFKILANPAGFRSLRAMETPASETMRTPVDFKAVPGAPVASVNCKVERGS 702

Query: 687  -----------------TEESNDKSKVWKLTELSEPNQCRSLRLPENL-RATKISRLIFT 728
                              ++S DK K W+L E+ +P+QC    LP+    +TK+ +L++T
Sbjct: 703  PVRHSQMLNGVDPSKSRIDDSTDKPKSWQLAEILDPSQCFQATLPDTAGSSTKVVQLLYT 762

Query: 729  NSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEA 788
            NSG  ILAL SN I  LWKW   E+N SGKATA+V PQ WQP SG++MTNDV+  N E A
Sbjct: 763  NSGAGILALGSNGIQRLWKWVPNEQNPSGKATATVVPQHWQPNSGLLMTNDVSGVNLENA 822

Query: 789  VPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMD 848
             PC ALSKNDSYVMSA+GGK+SLFNMMTFK M TFMPPPPA+TFLAFHPQDNN+IAIGM+
Sbjct: 823  APCIALSKNDSYVMSAAGGKVSLFNMMTFKVMTTFMPPPPASTFLAFHPQDNNVIAIGME 882

Query: 849  DSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNR 908
            DS+I IYNVRVDEVKSKLKGH KRITGLAFS ALN+LVSSGAD+Q+C WS D WEK+K+ 
Sbjct: 883  DSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTALNILVSSGADAQICFWSIDTWEKRKSV 942

Query: 909  FLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPRES-SAPIT 967
             +Q+P G+   A  DTRVQFH DQ+  LVVHETQLA+F+ +K+EC++QW+P++S SAPI+
Sbjct: 943  AIQMPAGK--AANGDTRVQFHVDQLRILVVHETQLAVFDASKMECIRQWIPQDSLSAPIS 1000

Query: 968  HATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQE 1027
             A ++C+SQL+Y  F D  + VF A +L+LRCRI+PSAYLP G  +  + PLV+AAHPQ+
Sbjct: 1001 SAVYACNSQLIYTTFRDGNIGVFDADSLRLRCRISPSAYLPQG--NQGLSPLVVAAHPQD 1058

Query: 1028 PNEFALGLSDGGVHVFEPLESEGKWGVPPP---VDNGSTSS 1065
            PN+FA+GL+DG V + EP E EGKWG+ PP   +++ ST+S
Sbjct: 1059 PNQFAVGLNDGSVKMMEPTEGEGKWGMIPPSEAINSPSTTS 1099

Transcriptional corepressor. Negative regulator of jasmonate responses.

Arabidopsis thaliana (taxid: 3702)

>sp|Q00808|HETE1_PODAS Vegetative incompatibility protein HET-E-1 OS=Podospora anserina GN=HET-E1 PE=4 SV=1

 Score = 96.3 bits (238), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 100/357 (28%), Positives = 148/357 (41%), Gaps = 60/357 (16%)

Query: 350  TVTRTL-NQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDL--GA 406
            T T+TL   GSS +S+ F P  Q    V +  GD              +  K+WD   G 
Sbjct: 958  TCTQTLEGHGSSVLSVAFSPDGQR---VASGSGD--------------KTIKIWDTASGT 1000

Query: 407  CSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVG 466
            C+  L+       G SV  V +SPDG           ++I+    G    Q LE   H G
Sbjct: 1001 CTQTLEG-----HGGSVWSVAFSPDGQRVASGSDDKTIKIWDTASG-TCTQTLE--GHGG 1052

Query: 467  GVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFI 526
             V  + FS P+ Q  V +  DD TIK+WDA +G      EGH   V+SV      + Q +
Sbjct: 1053 WVQSVVFS-PDGQR-VASGSDDHTIKIWDAVSGTCTQTLEGHGDSVWSVA--FSPDGQRV 1108

Query: 527  FSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGV------- 579
             S ++DG IK W   +       E  G W  ++A+S DG R   G    ++ +       
Sbjct: 1109 ASGSIDGTIKIWDAASGTCTQTLEGHGGWVHSVAFSPDGQRVASGSIDGTIKIWDAASGT 1168

Query: 580  --------------VQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIR 625
                          V F     R  +   D +IK WD  S     +++  GG   S  + 
Sbjct: 1169 CTQTLEGHGGWVQSVAFSPDGQRVASGSSDKTIKIWDTASGTCTQTLEGHGGWVQS--VA 1226

Query: 626  FNKDGCLLAVSTNDNGIKILATSDG-----IRLLRTFENLAYDASRTSENSKNGDVR 677
            F+ DG  +A  ++DN IKI  T+ G     + +  T   L++D +    N+  G ++
Sbjct: 1227 FSPDGQRVASGSSDNTIKIWDTASGTCTQTLNVGSTATCLSFDYTNAYINTNIGRIQ 1283

Responsible for vegetative incompatibility through specific interactions with different alleles of the unlinked gene, het-c.

Podospora anserina (taxid: 5145)

>sp|Q8YTC2|Y2800_NOSS1 Uncharacterized WD repeat-containing protein alr2800 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=alr2800 PE=4 SV=1

 Score = 84.0 bits (206), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 114/497 (22%), Positives = 190/497 (38%), Gaps = 86/497 (17%)

Query: 429  SPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDD 488
            SP+G L     +   V+++    G  +   L    H   V  + FS P+ ++ + +CG D
Sbjct: 651  SPEGQLLATCDTDCHVRVWEVKSGKLL---LICRGHSNWVRFVVFS-PDGEI-LASCGAD 705

Query: 489  KTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVD 548
            + +K+W   +G       GHE  V+SV  H   + + + S + D  IK W   +      
Sbjct: 706  ENVKLWSVRDGVCIKTLTGHEHEVFSVAFH--PDGETLASASGDKTIKLWDIQDGTCLQT 763

Query: 549  YEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQL 608
                  W   +A+S DG                     N   ++  D +IK WD+   + 
Sbjct: 764  LTGHTDWVRCVAFSPDG---------------------NTLASSAADHTIKLWDVSQGKC 802

Query: 609  LTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTF-------ENLA 661
            L ++ +  G   S  + F+ DG  LA  + D  IKI     G   L+T+        ++A
Sbjct: 803  LRTLKSHTGWVRS--VAFSADGQTLASGSGDRTIKIWNYHTG-ECLKTYIGHTNSVYSIA 859

Query: 662  YDASRTSENSKNGD-VRSLADVKPRIT-----EESNDKSKVWKLTELSEPNQCRSLRLPE 715
            Y        S +GD    L D +  I        +N+   V   +   +   C SL    
Sbjct: 860  YSPDSKILVSGSGDRTIKLWDCQTHICIKTLHGHTNEVCSV-AFSPDGQTLACVSLDQSV 918

Query: 716  NLRATKISRLIFTNSGNA-------------ILALASNAIHL-LWKWQRTERNSSGKATA 761
             L   +  + +    GN              ILA  SN   + LW WQ      +GK  +
Sbjct: 919  RLWNCRTGQCLKAWYGNTDWALPVAFSPDRQILASGSNDKTVKLWDWQ------TGKYIS 972

Query: 762  SVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTM 820
            S+                       + +   A S +   + SAS    + L+N+ T +  
Sbjct: 973  SL-------------------EGHTDFIYGIAFSPDSQTLASASTDSSVRLWNISTGQCF 1013

Query: 821  ATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSH 880
               +        + FHPQ   IIA G  D +++++N+   +    L  HS +I G+A+S 
Sbjct: 1014 QILLEHTDWVYAVVFHPQ-GKIIATGSADCTVKLWNISTGQCLKTLSEHSDKILGMAWSP 1072

Query: 881  ALNVLVSSGADSQLCVW 897
               +L S+ AD  + +W
Sbjct: 1073 DGQLLASASADQSVRLW 1089

Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690)

>sp|Q8YRI1|YY46_NOSS1 Uncharacterized WD repeat-containing protein alr3466 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=alr3466 PE=4 SV=1

 Score = 82.4 bits (202), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 115/515 (22%), Positives = 211/515 (40%), Gaps = 64/515 (12%)

Query: 422  SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLC 481
            SV  V +SPDG LF    S  IV+ +    G E+   L    H   VN + FS   K L 
Sbjct: 866  SVLTVAFSPDGKLFATGDSGGIVRFWEAATGKEL---LTCKGHNSWVNSVGFSQDGKMLA 922

Query: 482  VITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYD 541
              +  DD+T+++WD ++G     F+GH + V SV      N   + S + D  ++ W   
Sbjct: 923  --SGSDDQTVRLWDISSGQCLKTFKGHTSRVRSVV--FSPNSLMLASGSSDQTVRLWDIS 978

Query: 542  NLGSRVDYEAPGRWCTTMAYSADGT-----------RTYQGFRKRSLGVVQFDTTKNR-- 588
            +      ++    W  ++A++ DG+           R +     +   + Q  T+  R  
Sbjct: 979  SGECLYIFQGHTGWVYSVAFNLDGSMLATGSGDQTVRLWDISSSQCFYIFQGHTSCVRSV 1038

Query: 589  -------FLAAG-DDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDN 640
                    LA+G DD +++ WD+ S   L ++   G       + F+ DG +LA   +D 
Sbjct: 1039 VFSSDGAMLASGSDDQTVRLWDISSGNCLYTLQ--GHTSCVRSVVFSPDGAMLASGGDDQ 1096

Query: 641  GIKILATSDGIRLLRTFENLAYDASRTSENSKNGDVRSLADVKPRITEESNDKSKVWKLT 700
             +++   S G        N  Y     +       VR L      +T  +    ++ +L 
Sbjct: 1097 IVRLWDISSG--------NCLY-----TLQGYTSWVRFLVFSPNGVTLANGSSDQIVRLW 1143

Query: 701  ELSEPNQCRSLRLPEN-LRATKIS---RLIFTNSGNAILAL----ASNAIHLLW---KW- 748
            ++S      +L+   N + A   S     + + SG+  + L    +S  +++L     W 
Sbjct: 1144 DISSKKCLYTLQGHTNWVNAVAFSPDGATLASGSGDQTVRLWDISSSKCLYILQGHTSWV 1203

Query: 749  QRTERNSSGKATASVAP----QLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSA 804
                 N  G   AS +     +LW+  S   +    T       V     + + S + S 
Sbjct: 1204 NSVVFNPDGSTLASGSSDQTVRLWEINSSKCL---CTFQGHTSWVNSVVFNPDGSMLASG 1260

Query: 805  SGGK-ISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVK 863
            S  K + L+++ + K + TF         +AF+P D +++A G  D +++++ +   +  
Sbjct: 1261 SSDKTVRLWDISSSKCLHTFQGHTNWVNSVAFNP-DGSMLASGSGDQTVRLWEISSSKCL 1319

Query: 864  SKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS 898
               +GH+  ++ + FS    +L S   D  + +WS
Sbjct: 1320 HTFQGHTSWVSSVTFSPDGTMLASGSDDQTVRLWS 1354

Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690)

>sp|Q54KL5|WDR5_DICDI WD repeat-containing protein 5 homolog OS=Dictyostelium discoideum GN=wdr5 PE=3 SV=1

 Score = 77.8 bits (190), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 60/236 (25%), Positives = 111/236 (47%), Gaps = 29/236 (12%)

Query: 422 SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLC 481
           S++ V +SPDG     A +   ++I+  + G   R    ++ H  G++DIA+S  +K +C
Sbjct: 48  SISSVKFSPDGKWLASASADKTIKIWGAYDGKFERT---LEGHKEGISDIAWSQDSKLIC 104

Query: 482 VITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYD 541
             +  DDKTIK+WD  +G      +GH+  V+ V  + + N+  I S + D  ++ W   
Sbjct: 105 --SASDDKTIKIWDVESGKMVKTLKGHKEYVFGVSFNPQSNL--IVSGSFDENVRIWDV- 159

Query: 542 NLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFW 601
           N G           CT M  +     T           V F+      ++   D +++ W
Sbjct: 160 NTGE----------CTKMISAHSDPVT----------GVHFNRDGTLVVSGSYDGTVRIW 199

Query: 602 DMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTF 657
           D  + QLL +I  + G   S  ++F+ +G  +   T DN +++ + ++  + L+T+
Sbjct: 200 DTTTGQLLNTISTEDGKEVS-FVKFSPNGKFVLAGTLDNTLRLWSYNNNKKCLKTY 254

Dictyostelium discoideum (taxid: 44689)

>sp|Q8YV57|Y2124_NOSS1 Uncharacterized WD repeat-containing protein all2124 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=all2124 PE=4 SV=1

 Score = 72.8 bits (177), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 110/505 (21%), Positives = 192/505 (38%), Gaps = 107/505 (21%)

Query: 454  EVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVY 513
            E+++   ++ H  GV  I+ S   +   + +   DKTIK+W + +G       GHE  VY
Sbjct: 1061 EMQERNRLEGHKDGVISISISRDGQ--TIASGSLDKTIKLW-SRDGRLFRTLNGHEDAVY 1117

Query: 514  SVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGT--RTYQG 571
            SV      + Q I S   D  IK W                       ++DGT  +T  G
Sbjct: 1118 SVS--FSPDGQTIASGGSDKTIKLW----------------------QTSDGTLLKTITG 1153

Query: 572  FRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGC 631
              ++++  V F        +A  D SIK WD  S QLL ++   G       +RF+ DG 
Sbjct: 1154 -HEQTVNNVYFSPDGKNLASASSDHSIKLWDTTSGQLLMTLT--GHSAGVITVRFSPDGQ 1210

Query: 632  LLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKNGDVRSLADVKPRITEESN 691
             +A  + D  +K+    DG +LL+T             N     V SL+      T  S 
Sbjct: 1211 TIAAGSEDKTVKLWHRQDG-KLLKTL------------NGHQDWVNSLSFSPDGKTLASA 1257

Query: 692  DKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRT 751
               K  KL  +++    ++L+   +     +  + F++ G AI + + +    LW     
Sbjct: 1258 SADKTIKLWRIADGKLVKTLKGHND----SVWDVNFSSDGKAIASASRDNTIKLWNRHGI 1313

Query: 752  ER-----NSSGKATASVAP--------------QLWQPP--------------------- 771
            E      +S G    +  P              +LWQ P                     
Sbjct: 1314 ELETFTGHSGGVYAVNFLPDSNIIASASLDNTIRLWQRPLISPLEVLAGNSGVYAVSFLH 1373

Query: 772  SGIMMTNDVTDSNPE----------------EAVPCFALSKNDSYVMSASGGK-ISLFNM 814
             G ++     D N +                +A+   + +     + SA+  K + ++ +
Sbjct: 1374 DGSIIATAGADGNIQLWHSQDGSLLKTLPGNKAIYGISFTPQGDLIASANADKTVKIWRV 1433

Query: 815  MTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRIT 874
               K + T +        + F P D   +A    D++++++NV   + K  LKGH+  + 
Sbjct: 1434 RDGKALKTLIGHDNEVNKVNFSP-DGKTLASASRDNTVKLWNVSDGKFKKTLKGHTDEVF 1492

Query: 875  GLAFSHALNVLVSSGADSQLCVWSS 899
             ++FS    ++ S+ AD  + +W S
Sbjct: 1493 WVSFSPDGKIIASASADKTIRLWDS 1517

Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	1082
24461849	1127	CTV.2 [Citrus trifoliata]	0.987	0.948	0.935	0.0
224134436	1172	predicted protein [Populus trichocarpa]	0.997	0.920	0.831	0.0
356550630	1132	PREDICTED: topless-related protein 1-lik	0.992	0.948	0.837	0.0
225463556	1138	PREDICTED: protein TOPLESS [Vitis vinife	0.993	0.944	0.838	0.0
356526242	1133	PREDICTED: protein TOPLESS-like [Glycine	0.992	0.947	0.838	0.0
449517721	1139	PREDICTED: LOW QUALITY PROTEIN: protein	0.995	0.945	0.832	0.0
449468952	1139	PREDICTED: protein TOPLESS-like [Cucumis	0.995	0.945	0.832	0.0
255553317	1115	WD-repeat protein, putative [Ricinus com	0.977	0.948	0.836	0.0
224128504	1153	predicted protein [Populus trichocarpa]	0.998	0.936	0.845	0.0
357458875	1138	WD repeat-containing protein, putative [	0.995	0.946	0.827	0.0

>gi|24461849|gb|AAN62336.1|AF506028_3 CTV.2 [Citrus trifoliata]

 Score = 2172 bits (5629), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 1067/1140 (93%), Positives = 1067/1140 (93%), Gaps = 71/1140 (6%)

Query: 1    MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDDVEKYLSGF 60
            MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDDVEKYLSGF
Sbjct: 1    MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDDVEKYLSGF 60

Query: 61   TKVDDNRYSMKIFFEIRKQKYLEALDKHDRAKAVEILVKDLKVFSTFNEELFKEITQLLT 120
            TKVDDNRYSMKIFFEIRKQKYLEALDKHDRAKAVEILVKDLKVFSTFNEELFKEITQLLT
Sbjct: 61   TKVDDNRYSMKIFFEIRKQKYLEALDKHDRAKAVEILVKDLKVFSTFNEELFKEITQLLT 120

Query: 121  LENFRENEQLSKYGDTKSARSIMLVELKKLIEANPLFRDKLQFPNLKNSRLRTLINQSLN 180
            LENFRENEQLSKYGDTKSARSIMLVELKKLIEANPLFRDKLQFPNLKNS        SLN
Sbjct: 121  LENFRENEQLSKYGDTKSARSIMLVELKKLIEANPLFRDKLQFPNLKNS--------SLN 172

Query: 181  WQHQLCKNPRPNPDIKTLFVDHTCGQPNGARAPSPANNPLLGSLPKAGVFPPLGAHGPFQ 240
            WQHQLCKNPRPNPDIKTLFVDHTCGQPNGARAPSPANNPLLGSLPKAGVFPPLGAHGPFQ
Sbjct: 173  WQHQLCKNPRPNPDIKTLFVDHTCGQPNGARAPSPANNPLLGSLPKAGVFPPLGAHGPFQ 232

Query: 241  PTPAPVPTPLAGWMSNPPTVTHPAVSGGAIGLGSPSIPAAALKHPRTPPTNPSVDYPSGD 300
            PTPAPVPTPLAGWMSNPPTVTHPAVSGGAIGLGSPSIPAAALKHPRTPPTNPSVDYPSGD
Sbjct: 233  PTPAPVPTPLAGWMSNPPTVTHPAVSGGAIGLGSPSIPAAALKHPRTPPTNPSVDYPSGD 292

Query: 301  SDHLSKRTRPIGISDEINLPVNVLPVSFTGHSHSHSHSQAFSTPEDLPKTVTRTLNQGSS 360
            SDHLSKRTRPIGISDEINLPVNVLPVSFTGHSHS    QAFS PEDLPKTVTRTLNQGSS
Sbjct: 293  SDHLSKRTRPIGISDEINLPVNVLPVSFTGHSHS----QAFSAPEDLPKTVTRTLNQGSS 348

Query: 361  PMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPG 420
            PMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPG
Sbjct: 349  PMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPG 408

Query: 421  VSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQL 480
            VSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQL
Sbjct: 409  VSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQL 468

Query: 481  CVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLY 540
            CVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLY
Sbjct: 469  CVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLY 528

Query: 541  DNLGSRVDYEAPGRWCTTMAYSADGTR--------------------------TYQGFRK 574
            DNLGSRVDYEAPGRWCTTMAYSADGTR                          TYQGFRK
Sbjct: 529  DNLGSRVDYEAPGRWCTTMAYSADGTRLFSCGTSKDGESFIVEWNESEGAVKRTYQGFRK 588

Query: 575  RSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLA 634
            RSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLA
Sbjct: 589  RSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLA 648

Query: 635  VSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSK---------------------- 672
            VSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSK                      
Sbjct: 649  VSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADR 708

Query: 673  ----------NGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKI 722
                      NGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKI
Sbjct: 709  AASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKI 768

Query: 723  SRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTD 782
            SRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTD
Sbjct: 769  SRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTD 828

Query: 783  SNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNI 842
            SNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNI
Sbjct: 829  SNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNI 888

Query: 843  IAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGW 902
            IAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVW SDGW
Sbjct: 889  IAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWGSDGW 948

Query: 903  EKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPRES 962
            EKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPRES
Sbjct: 949  EKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPRES 1008

Query: 963  SAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIA 1022
            SAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGV SSNVHPLVIA
Sbjct: 1009 SAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGV-SSNVHPLVIA 1067

Query: 1023 AHPQEPNEFALGLSDGGVHVFEPLESEGKWGVPPPVDNGSTSSMPATPPVGGSGSDQAQR 1082
            AHPQEPNEFALGLSDGGVHVFEPLESEGKWGVPPPVDNGSTSSMPATPPVGGSGSDQAQR
Sbjct: 1068 AHPQEPNEFALGLSDGGVHVFEPLESEGKWGVPPPVDNGSTSSMPATPPVGGSGSDQAQR 1127

Source: Citrus trifoliata

Species: Citrus trifoliata

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224134436|ref|XP_002327405.1| predicted protein [Populus trichocarpa] gi|222835959|gb|EEE74380.1| predicted protein [Populus trichocarpa]

 Score = 1999 bits (5179), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 977/1175 (83%), Positives = 1024/1175 (87%), Gaps = 96/1175 (8%)

Query: 1    MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDDVEKYLSGF 60
            MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWD+VEKYLSGF
Sbjct: 1    MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDEVEKYLSGF 60

Query: 61   TKVDDNRYSMKIFFEIRKQKYLEALDKHDRAKAVEILVKDLKVFSTFNEELFKEITQLLT 120
            TKVDDNRYSMKIFFEIRKQKYLEALDKHDR+KAVEILVKDLKVFSTFNEELFKEITQLLT
Sbjct: 61   TKVDDNRYSMKIFFEIRKQKYLEALDKHDRSKAVEILVKDLKVFSTFNEELFKEITQLLT 120

Query: 121  LENFRENEQLSKYGDTKSARSIMLVELKKLIEANPLFRDKLQFPNLKNSRLRTLINQSLN 180
            LENFRENEQLSKYGDTKSAR+IMLVELKKLIEANPLFRDKLQFPNLKNSRLRTLINQSLN
Sbjct: 121  LENFRENEQLSKYGDTKSARAIMLVELKKLIEANPLFRDKLQFPNLKNSRLRTLINQSLN 180

Query: 181  WQHQLCKNPRPNPDIKTLFVDHTCGQPNGARAPSPANNPLLGSLPKAGVFPPLGAHGPFQ 240
            WQHQLCK PR NPDIKTLF DH+CGQPNGARAPSPANNPLLGSLPKAG FPPLGAHGPFQ
Sbjct: 181  WQHQLCKTPRSNPDIKTLFFDHSCGQPNGARAPSPANNPLLGSLPKAGGFPPLGAHGPFQ 240

Query: 241  PTPAPVPTPLAGWMSNPPTVTHPAVSGG-AIGLGSPSIPA-------------------- 279
            PTPAPVP PLAGWMSNPPTVTHPAVSGG AIGLG+PSI                      
Sbjct: 241  PTPAPVPAPLAGWMSNPPTVTHPAVSGGGAIGLGAPSISGSSFLLFAIDASANHHTEYVS 300

Query: 280  ----------------AALKHPRTPPTNPSVDYPSGDSDHLSKRTRPIGISDEINLPVNV 323
                            AALKHPRTPP+NPSVDYPSGD DH++KRTRP+GISDE+NLPVNV
Sbjct: 301  IHVSLFNNICILLPCVAALKHPRTPPSNPSVDYPSGDPDHVAKRTRPMGISDEVNLPVNV 360

Query: 324  LPVSFTGHSHSHSHSQAFSTPEDLPKTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDI 383
            LP+SF GH H H   Q F+ P+DLPK V RTLNQGSSPMSMDFHPVQQT+LLVGTNVG+I
Sbjct: 361  LPMSFPGHGHGHG--QTFNAPDDLPKAVVRTLNQGSSPMSMDFHPVQQTILLVGTNVGEI 418

Query: 384  GLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHI 443
            GLWEVGSRERLVLRNFKVWDL ACSMPLQAALVKDPGVSVNRVIWSPDG+LFGVAYSRHI
Sbjct: 419  GLWEVGSRERLVLRNFKVWDLNACSMPLQAALVKDPGVSVNRVIWSPDGNLFGVAYSRHI 478

Query: 444  VQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQY 503
            VQIYSYHG D+VRQHLEIDAHVGGVND+AFS PNKQLCVITCGDDK IKVWDA  GAKQY
Sbjct: 479  VQIYSYHGNDDVRQHLEIDAHVGGVNDLAFSTPNKQLCVITCGDDKIIKVWDAATGAKQY 538

Query: 504  IFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSA 563
             FEGHEAPVYS+CPH+KENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSA
Sbjct: 539  TFEGHEAPVYSICPHYKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSA 598

Query: 564  DGTR--------------------------TYQGFRKRSLGVVQFDTTKNRFLAAGDDFS 597
            DGTR                          TY GFRK SLGVVQFDTTKNRFLAAGDDFS
Sbjct: 599  DGTRLFSCGTSKDGESYIVEWNESEGAVKRTYVGFRKHSLGVVQFDTTKNRFLAAGDDFS 658

Query: 598  IKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTF 657
            IKFWDMDSVQLLT+IDADGGLPASPRIRFNK+G LLAVS NDNGIKILA SDGIRLLRTF
Sbjct: 659  IKFWDMDSVQLLTTIDADGGLPASPRIRFNKEGTLLAVSANDNGIKILANSDGIRLLRTF 718

Query: 658  ENLAYDASRTSEN------------------------------SKNGDVRSLADVKPRIT 687
            ENL+YDASR SE+                                NGD R+L DVKPRI 
Sbjct: 719  ENLSYDASRASESPTVNPISAAAAAAATSSGLADRGASVVAVAGMNGDARNLGDVKPRIA 778

Query: 688  EESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWK 747
            EE NDKSK+WKLTE++EP+QCRSLRLPENLR TKISRLI+TNSGNAILALASNAIHLLWK
Sbjct: 779  EELNDKSKIWKLTEINEPSQCRSLRLPENLRVTKISRLIYTNSGNAILALASNAIHLLWK 838

Query: 748  WQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGG 807
            WQR++RN+SGKATA V PQLWQP SGI+MTND+TDSNPEEAV CFALSKNDSYVMSASGG
Sbjct: 839  WQRSDRNASGKATAGVPPQLWQPSSGILMTNDITDSNPEEAVACFALSKNDSYVMSASGG 898

Query: 808  KISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLK 867
            KISLFNMMTFKTM TFMPPPPAATFLAFHPQDNNIIAIGMDDS+IQIYNVRVDEVKSKLK
Sbjct: 899  KISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMDDSTIQIYNVRVDEVKSKLK 958

Query: 868  GHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQ 927
            GHSKRITGLAFSH L+VLVSSGAD+QLCVW+SDGWEKQK RFLQ+PTGRT TAQSDTRVQ
Sbjct: 959  GHSKRITGLAFSHVLSVLVSSGADAQLCVWNSDGWEKQKTRFLQVPTGRTTTAQSDTRVQ 1018

Query: 928  FHQDQIHFLVVHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATV 987
            FHQDQIHFLVVHETQLAIFETTKLECVKQW+PRESSAPI+HA FSCDSQLVYA FLDATV
Sbjct: 1019 FHQDQIHFLVVHETQLAIFETTKLECVKQWLPRESSAPISHAVFSCDSQLVYASFLDATV 1078

Query: 988  CVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLE 1047
            CVFSAANL+LRCRINPS+Y P  V SSNVHPLVIAAHPQEPN+FALGLSDGGVHVFEPLE
Sbjct: 1079 CVFSAANLRLRCRINPSSYPPPNV-SSNVHPLVIAAHPQEPNQFALGLSDGGVHVFEPLE 1137

Query: 1048 SEGKWGVPPPVDNGSTSSMPATPPVGGSGSDQAQR 1082
            SEGKWGVPPP +NGS SS+ A P VG SGSDQAQR
Sbjct: 1138 SEGKWGVPPPAENGSASSVAAIPSVGPSGSDQAQR 1172

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356550630|ref|XP_003543688.1| PREDICTED: topless-related protein 1-like [Glycine max]

 Score = 1992 bits (5160), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 955/1140 (83%), Positives = 1021/1140 (89%), Gaps = 66/1140 (5%)

Query: 1    MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDDVEKYLSGF 60
            MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWD+VE+YLSGF
Sbjct: 1    MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDEVERYLSGF 60

Query: 61   TKVDDNRYSMKIFFEIRKQKYLEALDKHDRAKAVEILVKDLKVFSTFNEELFKEITQLLT 120
            TKVDDNRYSMKIFFEIRKQKYLEALDKHDR+KAVEILVKDLKVF+TFNEELFKEITQLLT
Sbjct: 61   TKVDDNRYSMKIFFEIRKQKYLEALDKHDRSKAVEILVKDLKVFATFNEELFKEITQLLT 120

Query: 121  LENFRENEQLSKYGDTKSARSIMLVELKKLIEANPLFRDKLQFPNLKNSRLRTLINQSLN 180
            LENFRENEQLSKYGDTKSAR+IMLVELKKLIEANPLFRDKLQFPNLKNSRLRTLINQSLN
Sbjct: 121  LENFRENEQLSKYGDTKSARAIMLVELKKLIEANPLFRDKLQFPNLKNSRLRTLINQSLN 180

Query: 181  WQHQLCKNPRPNPDIKTLFVDHTCGQPNGARAPSPANNPLLGSLPKAGVFPPLGAHGPFQ 240
            WQHQLCKNPRPNPDIKTLFVDH+CGQPNGARAPSPANNPLLGSLPKAG FPPLGAHGPFQ
Sbjct: 181  WQHQLCKNPRPNPDIKTLFVDHSCGQPNGARAPSPANNPLLGSLPKAGGFPPLGAHGPFQ 240

Query: 241  PTPAPVPTPLAGWMSNPPTVTHPAVSGGAIGLGSPSIPAAALKHPRTPPTNPSVDYPSGD 300
            PTPAPVPTPLAGWMSNP TV HPAVSGGAIGLG+PSIPAA LKHPRTPPTNPSVDYPSGD
Sbjct: 241  PTPAPVPTPLAGWMSNPTTVAHPAVSGGAIGLGAPSIPAA-LKHPRTPPTNPSVDYPSGD 299

Query: 301  SDHLSKRTRPIGISDEINLPVNVLPVSFTGHSHSHSHSQAFSTPEDLPKTVTRTLNQGSS 360
            SDH+SKRTRPIG+SDE+NLPVNVL  +F GH H     QAF+ P+DLPKT  R+LNQGSS
Sbjct: 300  SDHVSKRTRPIGMSDEVNLPVNVLSATFPGHGHG----QAFNAPDDLPKTAMRSLNQGSS 355

Query: 361  PMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPG 420
            PMSMDFHPVQQTLLLVGTNVGDI LWEVGSRERL++RNFKVWDL ACSMP QAALVKDPG
Sbjct: 356  PMSMDFHPVQQTLLLVGTNVGDIALWEVGSRERLLMRNFKVWDLSACSMPFQAALVKDPG 415

Query: 421  VSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQL 480
            VSVNRVIWSPDG+LFGVAYSRHIVQIYSYHGGD+V QHLEIDAHVGGVND+AFSHPNKQL
Sbjct: 416  VSVNRVIWSPDGALFGVAYSRHIVQIYSYHGGDDVGQHLEIDAHVGGVNDLAFSHPNKQL 475

Query: 481  CVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLY 540
            CVITCGDDKTIKVWDA  GAKQY FEGHEAPVYS+CPH+KENIQFIFSTALDGKIKAWLY
Sbjct: 476  CVITCGDDKTIKVWDAATGAKQYTFEGHEAPVYSICPHYKENIQFIFSTALDGKIKAWLY 535

Query: 541  DNLGSRVDYEAPGRWCTTMAYSADGTR--------------------------TYQGFRK 574
            DNLGSRVDYEAPGRWCTTMAYSADGTR                          TYQGFRK
Sbjct: 536  DNLGSRVDYEAPGRWCTTMAYSADGTRLFSCGTSKEGESSIVEWNESEGAVKRTYQGFRK 595

Query: 575  RSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLA 634
            RSLGVVQFDTTKNR+LAAGDDFSIKFWDMD++QLLT++DADGGLPASPRIRFNKDG LLA
Sbjct: 596  RSLGVVQFDTTKNRYLAAGDDFSIKFWDMDNIQLLTTVDADGGLPASPRIRFNKDGALLA 655

Query: 635  VSTNDNGIKILATSDGIRLLRTFENLAYDASRTSE------------------------- 669
            VS N+NGIKILA +DGIRLLRT EN  YD SRTSE                         
Sbjct: 656  VSANENGIKILANADGIRLLRTLENSLYDTSRTSEAMTKPTINPISAAAAAATSAALAER 715

Query: 670  -------NSKNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKI 722
                    + NGD R+L DVKPRI+EESNDKSK+WKLTE++EP+QCRSL+LPEN+R  KI
Sbjct: 716  ASSVVAITAMNGDARNLGDVKPRISEESNDKSKIWKLTEINEPSQCRSLKLPENVRVNKI 775

Query: 723  SRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTD 782
            SRLI+TNSGNAILALASNAIHLLWKWQR +RNS+GKATASV PQLWQP SGI+MTND+TD
Sbjct: 776  SRLIYTNSGNAILALASNAIHLLWKWQRNDRNSTGKATASVQPQLWQPSSGILMTNDITD 835

Query: 783  SNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNI 842
            +N E+AVPCFALSKNDSYVMSASGGKISLFNMMTFKTM TFMPPPPAATFLAFHPQDNNI
Sbjct: 836  NNTEDAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNI 895

Query: 843  IAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGW 902
            IAIGMDDSSIQIYNVRVDEVKSKLKGH+KRITGLAFSH LNVLVSSGAD+Q+CVW++DGW
Sbjct: 896  IAIGMDDSSIQIYNVRVDEVKSKLKGHTKRITGLAFSHVLNVLVSSGADAQICVWNTDGW 955

Query: 903  EKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPRES 962
            EKQK+RFLQ+P GRTP AQ+DTRVQFHQDQI FLVVHETQLAI+E TKLEC+KQW PR+S
Sbjct: 956  EKQKSRFLQLPAGRTPPAQADTRVQFHQDQIRFLVVHETQLAIYEATKLECLKQWFPRDS 1015

Query: 963  SAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIA 1022
            SAPI+HATFSCDSQL+YA FLDATVCV S +NL+LRCRINPSAYL A V SSNV PLVIA
Sbjct: 1016 SAPISHATFSCDSQLIYASFLDATVCVLSVSNLRLRCRINPSAYLSASV-SSNVQPLVIA 1074

Query: 1023 AHPQEPNEFALGLSDGGVHVFEPLESEGKWGVPPPVDNGSTSSMPATPPVGGSGSDQAQR 1082
            AHPQEPN+FA+GLSDGGVHVFEP ESEGKWGVPPP++NGSTS+M AT    G+ SD+AQR
Sbjct: 1075 AHPQEPNQFAVGLSDGGVHVFEPHESEGKWGVPPPIENGSTSNMAATSV--GASSDEAQR 1132

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225463556|ref|XP_002268265.1| PREDICTED: protein TOPLESS [Vitis vinifera] gi|297743564|emb|CBI36431.3| unnamed protein product [Vitis vinifera]

 Score = 1989 bits (5154), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 960/1145 (83%), Positives = 1024/1145 (89%), Gaps = 70/1145 (6%)

Query: 1    MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDDVEKYLSGF 60
            MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVH+GNWD+VEKYLSGF
Sbjct: 1    MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHSGNWDEVEKYLSGF 60

Query: 61   TKVDDNRYSMKIFFEIRKQKYLEALDKHDRAKAVEILVKDLKVFSTFNEELFKEITQLLT 120
            TKVDDNRYSMKIFFEIRKQKYLEALDKHDR+KAVEILVKDLKVF+TFNEELFKEITQLLT
Sbjct: 61   TKVDDNRYSMKIFFEIRKQKYLEALDKHDRSKAVEILVKDLKVFATFNEELFKEITQLLT 120

Query: 121  LENFRENEQLSKYGDTKSARSIMLVELKKLIEANPLFRDKLQFPNLKNSRLRTLINQSLN 180
            LENFRENEQLSKYGDTKSAR+IMLVELKKLIEANPLFRDKLQFP+LKNSRLRTLINQSLN
Sbjct: 121  LENFRENEQLSKYGDTKSARAIMLVELKKLIEANPLFRDKLQFPHLKNSRLRTLINQSLN 180

Query: 181  WQHQLCKNPRPNPDIKTLFVDHTCGQPNGARAPSPANNPLLGSLPKAGVFPPLGAHGPFQ 240
            WQHQLCKNPRPNPDIKTLFVDHTCGQPNGARAPSPANNPLLGSLPKAG FPPLGAHGPFQ
Sbjct: 181  WQHQLCKNPRPNPDIKTLFVDHTCGQPNGARAPSPANNPLLGSLPKAGGFPPLGAHGPFQ 240

Query: 241  PTPAPVPTPLAGWMSNPPTVTHPAVSGGAIGLGSPSIPAAALKHPRTPPTNPSVDYPSGD 300
            PTPAPVPTPL  WMSNP TVTHPAVSGG IGLG+PSIPAA LKHPRTPPTNPSVDYPSGD
Sbjct: 241  PTPAPVPTPL--WMSNPSTVTHPAVSGGPIGLGAPSIPAA-LKHPRTPPTNPSVDYPSGD 297

Query: 301  SDHLSKRTRPIGISDEINLPVNVLPVSFTGHSHSHSHSQAFSTPEDLPKTVTRTLNQGSS 360
            S+H++KR RP+GISDE+NLPVNVLPV+F GH HS    QAF+ P+DLPKT+ R L QGSS
Sbjct: 298  SEHVAKRGRPMGISDEVNLPVNVLPVTFPGHGHS----QAFNAPDDLPKTLVRNLTQGSS 353

Query: 361  PMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPG 420
            PMSMDFHPVQQTLLLVGTNVGDIGLWEVGS+++LV RNFKVWD+GACS+PLQAAL KDPG
Sbjct: 354  PMSMDFHPVQQTLLLVGTNVGDIGLWEVGSKQKLVSRNFKVWDIGACSVPLQAALAKDPG 413

Query: 421  VSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQL 480
            VSVNR+IWSPDGSLFGVAYSRHIVQIYSYHGGD+VRQHLEIDAH GGVND+AFSHPNKQL
Sbjct: 414  VSVNRIIWSPDGSLFGVAYSRHIVQIYSYHGGDDVRQHLEIDAHAGGVNDLAFSHPNKQL 473

Query: 481  CVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLY 540
            CVITCGDDKTIKVWDATNG KQY FEGHE  VYSVCPH+KENIQFIFSTALDGKIKAWLY
Sbjct: 474  CVITCGDDKTIKVWDATNGTKQYTFEGHEDAVYSVCPHYKENIQFIFSTALDGKIKAWLY 533

Query: 541  DNLGSRVDYEAPGRWCTTMAYSADGTR--------------------------TYQGFRK 574
            DNLGSRVDY+APGRWCTTMAYSADGTR                          TYQGFRK
Sbjct: 534  DNLGSRVDYDAPGRWCTTMAYSADGTRLFSCGTSKDGDSYIVEWNESEGAVKRTYQGFRK 593

Query: 575  RSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLP---ASPRIRFNKDGC 631
            RSLGVVQFDTTKNRFLAAGDDFSIKFWDMD++QLLT +DA+GGLP   ASPRIRFNKDG 
Sbjct: 594  RSLGVVQFDTTKNRFLAAGDDFSIKFWDMDNIQLLTILDAEGGLPGLPASPRIRFNKDGT 653

Query: 632  LLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSEN--------------------- 670
            LLAVS N+N IKILA SDG+RLLRTF+NL+YDASR SE+                     
Sbjct: 654  LLAVSANENSIKILANSDGLRLLRTFDNLSYDASRASESVTKPAINSISAAAAAAAATSA 713

Query: 671  -------------SKNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENL 717
                           NGD R++ DVKPR+ EE+NDKSK+WKLTE++E +QCRSLRL ENL
Sbjct: 714  GLADRGASVVAIAGMNGDARNMGDVKPRLAEETNDKSKIWKLTEINETSQCRSLRLQENL 773

Query: 718  RATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMT 777
            R TKISRLI+TNSGNAILALASNAIH LWKWQR +RNSSGKATA+V+PQLWQP SGI+MT
Sbjct: 774  RITKISRLIYTNSGNAILALASNAIHFLWKWQRNDRNSSGKATATVSPQLWQPTSGILMT 833

Query: 778  NDVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHP 837
            NDV D+NPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTM TFMPPPPAATFLAFHP
Sbjct: 834  NDVADTNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMTTFMPPPPAATFLAFHP 893

Query: 838  QDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVW 897
            QDNNIIAIGMDDS+IQIYNVRVDEVKSKLKGHSKRITGLAFSH LNVLVSSGAD+QLCVW
Sbjct: 894  QDNNIIAIGMDDSTIQIYNVRVDEVKSKLKGHSKRITGLAFSHVLNVLVSSGADAQLCVW 953

Query: 898  SSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQW 957
            SSDGWEKQK+RFLQ+P GRT T QSDTRVQFHQDQ HFLVVHETQLAI+E TKL+CVKQW
Sbjct: 954  SSDGWEKQKSRFLQVPAGRTSTGQSDTRVQFHQDQTHFLVVHETQLAIYEATKLDCVKQW 1013

Query: 958  VPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVH 1017
            V RE++API+HATFSCDS LVYA FLDATVCVFSAANL+LRCRINP+AYLPA VS+SNVH
Sbjct: 1014 VQREAAAPISHATFSCDSLLVYASFLDATVCVFSAANLRLRCRINPTAYLPASVSNSNVH 1073

Query: 1018 PLVIAAHPQEPNEFALGLSDGGVHVFEPLESEGKWGVPPPVDNGSTSSMPATPPVGGSGS 1077
            PLVIAAHPQEPN+FALGLSDGGV VFEPLESEGKWGVPPPV+NGS SS+PATP VG SGS
Sbjct: 1074 PLVIAAHPQEPNQFALGLSDGGVCVFEPLESEGKWGVPPPVENGSASSVPATPSVGPSGS 1133

Query: 1078 DQAQR 1082
            DQ QR
Sbjct: 1134 DQPQR 1138

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356526242|ref|XP_003531727.1| PREDICTED: protein TOPLESS-like [Glycine max]

 Score = 1981 bits (5131), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 957/1141 (83%), Positives = 1023/1141 (89%), Gaps = 67/1141 (5%)

Query: 1    MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDDVEKYLSGF 60
            MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWD+VEKYLSGF
Sbjct: 1    MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDEVEKYLSGF 60

Query: 61   TKVDDNRYSMKIFFEIRKQKYLEALDKHDRAKAVEILVKDLKVFSTFNEELFKEITQLLT 120
            TKVDDNRYSMKIFFEIRKQKYLEALDKHDR+KAVEILVKDLKVF+TFNEELFKEITQLLT
Sbjct: 61   TKVDDNRYSMKIFFEIRKQKYLEALDKHDRSKAVEILVKDLKVFATFNEELFKEITQLLT 120

Query: 121  LENFRENEQLSKYGDTKSARSIMLVELKKLIEANPLFRDKLQFPNLKNSRLRTLINQSLN 180
            LENFRENEQLSKYGDTKSAR+IMLVELKKLIEANPLFRDKLQFPNLKNSRLRTLINQSLN
Sbjct: 121  LENFRENEQLSKYGDTKSARAIMLVELKKLIEANPLFRDKLQFPNLKNSRLRTLINQSLN 180

Query: 181  WQHQLCKNPRPNPDIKTLFVDHTCGQPNGARAPSPANNPLLGSLPKAGVFPPLGAHGPFQ 240
            WQHQLCKNPRPNPDIKTLFVDH+CGQPNGARAPSPANNPLLG+LPKAG FPPLGAHGPFQ
Sbjct: 181  WQHQLCKNPRPNPDIKTLFVDHSCGQPNGARAPSPANNPLLGALPKAGGFPPLGAHGPFQ 240

Query: 241  PTPAPVPTPLAGWMSNPPTVTHPAVS-GGAIGLGSPSIPAAALKHPRTPPTNPSVDYPSG 299
            PTPAPVPTPLAGWMSNP TV H AVS GGAIGLG+PS+P AALKHPRTPPTNPSVDYPSG
Sbjct: 241  PTPAPVPTPLAGWMSNPTTVAHAAVSGGGAIGLGAPSMP-AALKHPRTPPTNPSVDYPSG 299

Query: 300  DSDHLSKRTRPIGISDEINLPVNVLPVSFTGHSHSHSHSQAFSTPEDLPKTVTRTLNQGS 359
            DSDH++KRTRP+GISDE+NLPVNVL  +F GH     HSQAF+ P+D+PKTV RTLNQGS
Sbjct: 300  DSDHVAKRTRPMGISDEVNLPVNVLSATFPGHGQ---HSQAFNAPDDIPKTVVRTLNQGS 356

Query: 360  SPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDP 419
            SPMSMDFHP+QQ+LLLVGT+VGDI LWEVGSRERLV RNFKVWDL ACSMP QAALVKDP
Sbjct: 357  SPMSMDFHPMQQSLLLVGTHVGDIALWEVGSRERLVSRNFKVWDLSACSMPFQAALVKDP 416

Query: 420  GVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQ 479
            GVSVNRVIWSPDG+LFGVAYSRHIVQIYSYHGGDE+RQHLEIDAHVGGVND+AFSHPNKQ
Sbjct: 417  GVSVNRVIWSPDGALFGVAYSRHIVQIYSYHGGDEIRQHLEIDAHVGGVNDLAFSHPNKQ 476

Query: 480  LCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWL 539
            LCVITCGDDKTIKVWDA +GAKQY FEGHEAPVYSVCPH+KENIQFIFSTALDGKIKAWL
Sbjct: 477  LCVITCGDDKTIKVWDAASGAKQYTFEGHEAPVYSVCPHYKENIQFIFSTALDGKIKAWL 536

Query: 540  YDNLGSRVDYEAPGRWCTTMAYSADGT--------------------------RTYQGFR 573
            YDNLGSRVDYEAPGRWCTTMAYSADGT                          RTYQGFR
Sbjct: 537  YDNLGSRVDYEAPGRWCTTMAYSADGTRLFSCGTSKDGESSIVEWNESEGAVKRTYQGFR 596

Query: 574  KRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLL 633
            KRSLGVVQFDTTKNRFLAAGDDFSIKFWDMD+VQLLT++DADGGLPASPRIRFNKDG LL
Sbjct: 597  KRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDNVQLLTTVDADGGLPASPRIRFNKDGTLL 656

Query: 634  AVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSE------------------------ 669
            AVS N+NGIKILA  DGIRLLRT EN  Y+ASR SE                        
Sbjct: 657  AVSANENGIKILANGDGIRLLRTLENSLYEASRASEALTKPTINPISAAAAAATSAALAE 716

Query: 670  --------NSKNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATK 721
                       NGD R+L DVKPRI+EESNDKSK+WKLTE++E +QCRSL+LPEN+R TK
Sbjct: 717  RASSVVAIAGMNGDTRNLGDVKPRISEESNDKSKIWKLTEINEQSQCRSLKLPENVRVTK 776

Query: 722  ISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVT 781
            ISRLI+TNSGNAILALASNAIHLLWKWQR ERNSSGKATA++ PQLWQP SGI+MTND+ 
Sbjct: 777  ISRLIYTNSGNAILALASNAIHLLWKWQRNERNSSGKATATLQPQLWQPSSGILMTNDIA 836

Query: 782  DSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNN 841
            DSNPE+AVPCFALSKNDSYVMSASGGKISLFNMMTFKTM TFMPPPPAATFLAFHPQDNN
Sbjct: 837  DSNPEDAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNN 896

Query: 842  IIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDG 901
            IIAIGMDDSSIQIYNVRVDEVKSKLKGH+KRITGLAFSH LNVLVSSGAD+Q+CVW++DG
Sbjct: 897  IIAIGMDDSSIQIYNVRVDEVKSKLKGHTKRITGLAFSHVLNVLVSSGADAQICVWNTDG 956

Query: 902  WEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPRE 961
            WEKQK+RFLQ+P GRTP AQSDTRVQFHQDQI FLVVHETQLAI+E TKLE +KQW PR+
Sbjct: 957  WEKQKSRFLQLPPGRTPPAQSDTRVQFHQDQIQFLVVHETQLAIYEATKLEGLKQWFPRD 1016

Query: 962  SSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVI 1021
            SSAPI++ATFSCDSQLV+A FLDAT+CVFSA+NL+LRCRINPS+YLPA V SSN+ PLVI
Sbjct: 1017 SSAPISYATFSCDSQLVFASFLDATICVFSASNLRLRCRINPSSYLPASV-SSNIQPLVI 1075

Query: 1022 AAHPQEPNEFALGLSDGGVHVFEPLESEGKWGVPPPVDNGSTSSMPATPPVGGSGSDQAQ 1081
            AAHPQEPN+FALGLSDGGVHVFEPLESEGKWGVPPP++NGS S++ AT  VG   SDQAQ
Sbjct: 1076 AAHPQEPNQFALGLSDGGVHVFEPLESEGKWGVPPPIENGSASNVAAT-SVG--PSDQAQ 1132

Query: 1082 R 1082
            R
Sbjct: 1133 R 1133

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449517721|ref|XP_004165893.1| PREDICTED: LOW QUALITY PROTEIN: protein TOPLESS-like [Cucumis sativus]

 Score = 1979 bits (5127), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 952/1144 (83%), Positives = 1025/1144 (89%), Gaps = 67/1144 (5%)

Query: 1    MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDDVEKYLSGF 60
            MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWD+VEKYLSGF
Sbjct: 1    MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDEVEKYLSGF 60

Query: 61   TKVDDNRYSMKIFFEIRKQKYLEALDKHDRAKAVEILVKDLKVFSTFNEELFKEITQLLT 120
            TKVDDNRYSMKIFFEIRKQKYLEALDKHDR+KAV+ILVKDLKVF TFNEELFKEITQLLT
Sbjct: 61   TKVDDNRYSMKIFFEIRKQKYLEALDKHDRSKAVDILVKDLKVFXTFNEELFKEITQLLT 120

Query: 121  LENFRENEQLSKYGDTKSARSIMLVELKKLIEANPLFRDKLQFPNLKNSRLRTLINQSLN 180
            LENFRENEQLSKYGDTKSAR+IMLVELKKLIEANPLFRDKLQFP+LKNSRLRTLINQSLN
Sbjct: 121  LENFRENEQLSKYGDTKSARAIMLVELKKLIEANPLFRDKLQFPHLKNSRLRTLINQSLN 180

Query: 181  WQHQLCKNPRPNPDIKTLFVDHTCGQPNGARAPSPANNPLLGSLPKAGVFPPLGAHGPFQ 240
            WQHQLCKNPRPNPDIKTLFVDH+CGQPNGARAPSPANNPLLGSLPK G FPPLGAHGPFQ
Sbjct: 181  WQHQLCKNPRPNPDIKTLFVDHSCGQPNGARAPSPANNPLLGSLPKPGGFPPLGAHGPFQ 240

Query: 241  PTPAPVPTPLAGWMSNPPTVTHPAVS-GGAIGLGSPSIPAAALKHPRTPPTNPSVDYPSG 299
            PT APVP PLAGWMSNP  VTHPAVS GGAIGLG+PSIP AALKHPRTPPTNPSV+YPS 
Sbjct: 241  PTAAPVPAPLAGWMSNPSAVTHPAVSGGGAIGLGAPSIP-AALKHPRTPPTNPSVEYPSA 299

Query: 300  DSDHLSKRTRPIGISDEINLPVNVLPVSFTGHSHSHSHSQAFSTPEDLPKTVTRTLNQGS 359
            DSDH+SKR +P+G+SDE+NLPVNVLPVSFTG    H H+Q F+ P+DLPKTV RTLNQGS
Sbjct: 300  DSDHVSKRPKPMGMSDEVNLPVNVLPVSFTG----HGHAQTFNAPDDLPKTVMRTLNQGS 355

Query: 360  SPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDP 419
            +PMSMDFHP+QQTLLLVGTNVG+IGLWEVGSRERLV +NFKVWDL ACSMPLQAALVK+P
Sbjct: 356  NPMSMDFHPIQQTLLLVGTNVGEIGLWEVGSRERLVSKNFKVWDLNACSMPLQAALVKEP 415

Query: 420  GVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQ 479
             VSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGD++RQHLEIDAHVGGVND+AFS+PNKQ
Sbjct: 416  DVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDDMRQHLEIDAHVGGVNDLAFSNPNKQ 475

Query: 480  LCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWL 539
            LCVITCGDDKTIKVWDA NGA+QYIFEGHEAPV+SVCPH+KENIQFIFSTALDGKIKAWL
Sbjct: 476  LCVITCGDDKTIKVWDAGNGARQYIFEGHEAPVFSVCPHYKENIQFIFSTALDGKIKAWL 535

Query: 540  YDNLGSRVDYEAPGRWCTTMAYSADGT--------------------------RTYQGFR 573
            YDN+GSRVDY+APGRWCTTMAYSADGT                          RTYQGFR
Sbjct: 536  YDNMGSRVDYDAPGRWCTTMAYSADGTRLFSCGTSKDGDSYIVEWNESEGAVKRTYQGFR 595

Query: 574  KRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLL 633
            KRSLGVVQFDTTKNRFLAAGDDFSIKFWDMD+VQLLT++DADGGLPASPRIRFNKDG LL
Sbjct: 596  KRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDNVQLLTTVDADGGLPASPRIRFNKDGTLL 655

Query: 634  AVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKN-------------------- 673
            AVS N+NGIKILA  DGIRLLRTFENL+YDA+RTSE                        
Sbjct: 656  AVSGNENGIKILANVDGIRLLRTFENLSYDAARTSEAGTKPTINPISAAAAVAAAAAAGS 715

Query: 674  ---------------GDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLR 718
                           GD RSL DVKPRI E+SNDKSK+WKLTE++EP+QCRSLRLPEN+R
Sbjct: 716  AADRGASVVTMSGVAGDSRSLGDVKPRIPEDSNDKSKIWKLTEINEPSQCRSLRLPENVR 775

Query: 719  ATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTN 778
              KISRLI+TNSG+AILALASNAIHLLWKW R+ERNS+GKATA+V PQLWQP SGI+MTN
Sbjct: 776  VNKISRLIYTNSGSAILALASNAIHLLWKWTRSERNSTGKATANVLPQLWQPSSGILMTN 835

Query: 779  DVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQ 838
            DV D++ EEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTM TFMPPPPAATFLAFHPQ
Sbjct: 836  DVADTSSEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQ 895

Query: 839  DNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS 898
            DNNIIAIGMDDS+IQIYNVRVDEVKSKLKGHSKRITGLAFSH LNVLVSSGAD+QLCVWS
Sbjct: 896  DNNIIAIGMDDSTIQIYNVRVDEVKSKLKGHSKRITGLAFSHLLNVLVSSGADAQLCVWS 955

Query: 899  SDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWV 958
            SD WEKQK RFLQ+P+GR P++QSDTRVQFHQDQ+HFLVVHETQ+AI+ETTKLECVKQW 
Sbjct: 956  SDVWEKQKTRFLQLPSGRPPSSQSDTRVQFHQDQVHFLVVHETQIAIYETTKLECVKQWT 1015

Query: 959  PRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHP 1018
            PRES API+HATFSCDSQ++YA FLDATVCVF+ A+L+LRCRI+PSAYLPA VS+++V P
Sbjct: 1016 PRESGAPISHATFSCDSQMIYASFLDATVCVFTVASLRLRCRISPSAYLPASVSNASVQP 1075

Query: 1019 LVIAAHPQEPNEFALGLSDGGVHVFEPLESEGKWGVPPPVDNGSTSSMPATPPVGGSGSD 1078
            LVIAAHPQE N+FALGLSDGGVHVFEPLESEGKWGVPPPV+NGS SS+P TP VG SGS+
Sbjct: 1076 LVIAAHPQEANQFALGLSDGGVHVFEPLESEGKWGVPPPVENGSASSVPTTPSVGASGSE 1135

Query: 1079 QAQR 1082
            QA R
Sbjct: 1136 QAPR 1139

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449468952|ref|XP_004152185.1| PREDICTED: protein TOPLESS-like [Cucumis sativus]

 Score = 1978 bits (5125), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 952/1144 (83%), Positives = 1026/1144 (89%), Gaps = 67/1144 (5%)

Query: 1    MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDDVEKYLSGF 60
            MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWD+VEKYLSGF
Sbjct: 1    MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDEVEKYLSGF 60

Query: 61   TKVDDNRYSMKIFFEIRKQKYLEALDKHDRAKAVEILVKDLKVFSTFNEELFKEITQLLT 120
            TKVDDNRYSMKIFFEIRKQKYLEALDKHDR+KAV+ILVKDLKVFSTFNEELFKEITQLLT
Sbjct: 61   TKVDDNRYSMKIFFEIRKQKYLEALDKHDRSKAVDILVKDLKVFSTFNEELFKEITQLLT 120

Query: 121  LENFRENEQLSKYGDTKSARSIMLVELKKLIEANPLFRDKLQFPNLKNSRLRTLINQSLN 180
            LENFRENEQLSKYGDTKSAR+IMLVELKKLIEANPLFRDKLQFP+LKNSRLRTLINQSLN
Sbjct: 121  LENFRENEQLSKYGDTKSARAIMLVELKKLIEANPLFRDKLQFPHLKNSRLRTLINQSLN 180

Query: 181  WQHQLCKNPRPNPDIKTLFVDHTCGQPNGARAPSPANNPLLGSLPKAGVFPPLGAHGPFQ 240
            WQHQLCKNPRPNPDIKTLFVDH+CGQPNGARAPSPANNPLLGSLPK G FPPLGAHGPFQ
Sbjct: 181  WQHQLCKNPRPNPDIKTLFVDHSCGQPNGARAPSPANNPLLGSLPKPGGFPPLGAHGPFQ 240

Query: 241  PTPAPVPTPLAGWMSNPPTVTHPAVS-GGAIGLGSPSIPAAALKHPRTPPTNPSVDYPSG 299
            PT APVP PLAGWMSNP  VTHPAVS GGAIGLG+PSIP AALKHPRTPPTNPSV+YPS 
Sbjct: 241  PTAAPVPAPLAGWMSNPSAVTHPAVSGGGAIGLGAPSIP-AALKHPRTPPTNPSVEYPSA 299

Query: 300  DSDHLSKRTRPIGISDEINLPVNVLPVSFTGHSHSHSHSQAFSTPEDLPKTVTRTLNQGS 359
            DSDH+SKR +P+G+SDE+NLPVNVLPVSFTG    H H+Q F+ P+DLPKTV RTLNQGS
Sbjct: 300  DSDHVSKRPKPMGMSDEVNLPVNVLPVSFTG----HGHAQNFNAPDDLPKTVMRTLNQGS 355

Query: 360  SPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDP 419
            +PMSMDFHP+QQTLLLVGT+VG+IGLWEVGSRERLV +NFKVWDL ACSMPLQAALVK+P
Sbjct: 356  NPMSMDFHPIQQTLLLVGTDVGEIGLWEVGSRERLVSKNFKVWDLNACSMPLQAALVKEP 415

Query: 420  GVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQ 479
             VSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGD++RQHLEIDAHVGGVND+AFS+PNKQ
Sbjct: 416  DVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDDMRQHLEIDAHVGGVNDLAFSNPNKQ 475

Query: 480  LCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWL 539
            LCVITCGDDKTIKVWDA NGA+QYIFEGHEAPV+SVCPH+KENIQFIFSTALDGKIKAWL
Sbjct: 476  LCVITCGDDKTIKVWDAGNGARQYIFEGHEAPVFSVCPHYKENIQFIFSTALDGKIKAWL 535

Query: 540  YDNLGSRVDYEAPGRWCTTMAYSADGT--------------------------RTYQGFR 573
            YDN+GSRVDY+APGRWCTTMAYSADGT                          RTYQGFR
Sbjct: 536  YDNMGSRVDYDAPGRWCTTMAYSADGTRLFSCGTSKDGDSYIVEWNESEGAVKRTYQGFR 595

Query: 574  KRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLL 633
            KRSLGVVQFDTTKNRFLAAGDDFSIKFWDMD+VQLLT++DADGGLPASPRIRFNKDG LL
Sbjct: 596  KRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDNVQLLTTVDADGGLPASPRIRFNKDGTLL 655

Query: 634  AVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKN-------------------- 673
            AVS N+NGIKILA  DGIRLLRTFENL+YDA+RTSE                        
Sbjct: 656  AVSGNENGIKILANVDGIRLLRTFENLSYDAARTSEAGTKPTINPISAAAAVAAAAAAGS 715

Query: 674  ---------------GDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLR 718
                           GD RSL DVKPRI E+SNDKSK+WKLTE++EP+QCRSLRLPEN+R
Sbjct: 716  AADRGASVVTMSGVAGDSRSLGDVKPRIPEDSNDKSKIWKLTEINEPSQCRSLRLPENVR 775

Query: 719  ATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTN 778
              KISRLI+TNSG+AILALASNAIHLLWKW R+ERNS+GKATA+V PQLWQP SGI+MTN
Sbjct: 776  VNKISRLIYTNSGSAILALASNAIHLLWKWTRSERNSTGKATANVLPQLWQPSSGILMTN 835

Query: 779  DVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQ 838
            DV D++ EEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTM TFMPPPPAATFLAFHPQ
Sbjct: 836  DVADTSSEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQ 895

Query: 839  DNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS 898
            DNNIIAIGMDDS+IQIYNVRVDEVKSKLKGHSKRITGLAFSH LNVLVSSGAD+QLCVWS
Sbjct: 896  DNNIIAIGMDDSTIQIYNVRVDEVKSKLKGHSKRITGLAFSHLLNVLVSSGADAQLCVWS 955

Query: 899  SDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWV 958
            SD WEKQK RFLQ+P+GR P++QSDTRVQFHQDQ+HFLVVHETQ+AI+ETTKLECVKQW 
Sbjct: 956  SDVWEKQKTRFLQLPSGRPPSSQSDTRVQFHQDQVHFLVVHETQIAIYETTKLECVKQWT 1015

Query: 959  PRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHP 1018
            PRES API+HATFSCDSQ++YA FLDATVCVF+ A+L+LRCRI+PSAYLPA VS+++V P
Sbjct: 1016 PRESGAPISHATFSCDSQMIYASFLDATVCVFTVASLRLRCRISPSAYLPASVSNASVQP 1075

Query: 1019 LVIAAHPQEPNEFALGLSDGGVHVFEPLESEGKWGVPPPVDNGSTSSMPATPPVGGSGSD 1078
            LVIAAHPQE N+FALGLSDGGVHVFEPLESEGKWGVPPPV+NGS SS+P TP VG SGS+
Sbjct: 1076 LVIAAHPQEANQFALGLSDGGVHVFEPLESEGKWGVPPPVENGSASSVPTTPSVGASGSE 1135

Query: 1079 QAQR 1082
            QA R
Sbjct: 1136 QAPR 1139

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255553317|ref|XP_002517701.1| WD-repeat protein, putative [Ricinus communis] gi|223543333|gb|EEF44865.1| WD-repeat protein, putative [Ricinus communis]

 Score = 1962 bits (5083), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 953/1139 (83%), Positives = 1008/1139 (88%), Gaps = 81/1139 (7%)

Query: 1    MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDDVEKYLSGF 60
            MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVH+GNWD+VEKYLSGF
Sbjct: 1    MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHSGNWDEVEKYLSGF 60

Query: 61   TKVDDNRYSMKIFFEIRKQKYLEALDKHDRAKAVEILVKDLKVFSTFNEELFKEITQLLT 120
            TKVDDNRYSMKIFFEIRKQKYLEALDKHDR+KAV+ILVKDLKVF+TFNEELFKEITQLLT
Sbjct: 61   TKVDDNRYSMKIFFEIRKQKYLEALDKHDRSKAVDILVKDLKVFATFNEELFKEITQLLT 120

Query: 121  LENFRENEQLSKYGDTKSARSIMLVELKKLIEANPLFRDKLQFPNLKNSRLRTLINQSLN 180
            LENFRENEQLSKYGDTKSAR+IML                  FPNLKNSRLRTLINQSLN
Sbjct: 121  LENFRENEQLSKYGDTKSARAIML------------------FPNLKNSRLRTLINQSLN 162

Query: 181  WQHQLCKNPRPNPDIKTLFVDHTCGQPNGARAPSPANNPLLGSLPKAGVFPPLGAHGPFQ 240
            WQHQLCKNPRPNPDIKTLFVDH+CGQPNGARAPSPANNPLLGSLPKAG FPPLGAHGPFQ
Sbjct: 163  WQHQLCKNPRPNPDIKTLFVDHSCGQPNGARAPSPANNPLLGSLPKAGGFPPLGAHGPFQ 222

Query: 241  PTPAPVPTPLAGWMSNPPTVTHPAVSGG-AIGLGSPSIPAAALKHPRTPPTNPSVDYPSG 299
            PTPAPVP PLAGWMSNP  VTHPAVSGG AIGLG+PSIPAA LKHPRTPPTNPSVDYPSG
Sbjct: 223  PTPAPVPAPLAGWMSNPSAVTHPAVSGGGAIGLGAPSIPAA-LKHPRTPPTNPSVDYPSG 281

Query: 300  DSDHLSKRTRPIGISDEINLPVNVLPVSFTGHSHSHSHSQAFSTPEDLPKTVTRTLNQGS 359
            DSDH++KRTRP+GISDE+NLPVNVLPVSF GH H     Q F+ P+DLPKTV+RTLNQGS
Sbjct: 282  DSDHVAKRTRPMGISDEVNLPVNVLPVSFPGHGHG----QNFNAPDDLPKTVSRTLNQGS 337

Query: 360  SPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDP 419
            SPMSMDFHP++QTLLLVGTNVGD+ LWEVGSRERL+LRNFKVWD+  CSMPLQAALVKDP
Sbjct: 338  SPMSMDFHPLEQTLLLVGTNVGDVALWEVGSRERLMLRNFKVWDISTCSMPLQAALVKDP 397

Query: 420  GVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQ 479
            GVSVNRVIWSPDGSLFGVAYSRHIVQIYSYH GD+VRQHLEIDAHVGGVND+AFS PNKQ
Sbjct: 398  GVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHRGDDVRQHLEIDAHVGGVNDLAFSTPNKQ 457

Query: 480  LCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWL 539
            LCVITCGDDKTIKVWDA  G +QY FEGHEAPVYSVCPH+KENIQFIFSTALDGKIKAWL
Sbjct: 458  LCVITCGDDKTIKVWDAATGTRQYTFEGHEAPVYSVCPHYKENIQFIFSTALDGKIKAWL 517

Query: 540  YDNLGSRVDYEAPGRWCTTMAYSADGTR--------------------------TYQGFR 573
            YDNLGSRVDYEAPGRWCTTMAYSADGTR                          +YQGFR
Sbjct: 518  YDNLGSRVDYEAPGRWCTTMAYSADGTRLFSCGTSKDGESHIVEWNESEGNVKRSYQGFR 577

Query: 574  KRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLL 633
            KRSLGVVQFDTTKNRFLAAGDDFSIKFWDMD++QLLTSIDADGGLPASPRIRFNKDG LL
Sbjct: 578  KRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDNLQLLTSIDADGGLPASPRIRFNKDGSLL 637

Query: 634  AVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSEN----------------------- 670
            AVS N+NGIKILA SDG RLLRTFENL+YDASR SE                        
Sbjct: 638  AVSANENGIKILANSDGHRLLRTFENLSYDASRASEAVTKPIINPISAAAATSAGLADRT 697

Query: 671  -------SKNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKIS 723
                     NGD R++ DVKPRITEESNDKSK+WKLTE++EP QCRSLRLP+NLR  KIS
Sbjct: 698  ASVVTIPGMNGDARNMGDVKPRITEESNDKSKIWKLTEINEPTQCRSLRLPDNLRVNKIS 757

Query: 724  RLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDS 783
            RLI+TNSGNAILALASNAIHLLWKWQR+ERNS+GKATA+V+PQLWQP SGI+MTND+TD+
Sbjct: 758  RLIYTNSGNAILALASNAIHLLWKWQRSERNSTGKATANVSPQLWQPSSGILMTNDITDT 817

Query: 784  NPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNII 843
            NPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTM TFMPPPPAATFLAFHPQDNNII
Sbjct: 818  NPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNII 877

Query: 844  AIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWE 903
            AIGMDDS+IQIYNVRVDEVKSKLKGHSKRITGLAFSH LNVLVSSGAD+QLCVW+SDGWE
Sbjct: 878  AIGMDDSTIQIYNVRVDEVKSKLKGHSKRITGLAFSHVLNVLVSSGADAQLCVWNSDGWE 937

Query: 904  KQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPRESS 963
            KQK RFLQ+P GRT T QSDTRVQFHQDQI FLVVHETQLAI+E TKLEC KQWV RESS
Sbjct: 938  KQKTRFLQVPPGRTTTGQSDTRVQFHQDQIQFLVVHETQLAIYEATKLECTKQWVTRESS 997

Query: 964  APITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAA 1023
            API+HATFSCDSQLVYA FLDATVCVFSA NL+LRCRINPS+YL A VSSS +HPLVIAA
Sbjct: 998  APISHATFSCDSQLVYASFLDATVCVFSAQNLRLRCRINPSSYLSANVSSS-LHPLVIAA 1056

Query: 1024 HPQEPNEFALGLSDGGVHVFEPLESEGKWGVPPPVDNGSTSSMPATPPVGGSGSDQAQR 1082
            HPQEPN+FALGLSDGGVHVFEPLESEGKWGVPPP +NGS SS+PATP VG SGSDQAQR
Sbjct: 1057 HPQEPNQFALGLSDGGVHVFEPLESEGKWGVPPPAENGSASSVPATPSVGPSGSDQAQR 1115

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224128504|ref|XP_002329020.1| predicted protein [Populus trichocarpa] gi|222839691|gb|EEE78014.1| predicted protein [Populus trichocarpa]

 Score = 1959 bits (5076), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 976/1155 (84%), Positives = 1022/1155 (88%), Gaps = 75/1155 (6%)

Query: 1    MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDDVEKYLSGF 60
            MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWD+VEKYLSGF
Sbjct: 1    MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDEVEKYLSGF 60

Query: 61   TKVDDNRYSMKIFFEIRKQKYLEALDKHDRAKAVEILVKDLKVFSTFNEELFKEITQLLT 120
            TKVDDNRYSMKIFFEIRKQKYLEALDKHDR+ AVEILVKDLKVFSTFNEELFKEITQLLT
Sbjct: 61   TKVDDNRYSMKIFFEIRKQKYLEALDKHDRSMAVEILVKDLKVFSTFNEELFKEITQLLT 120

Query: 121  LENFRENEQLSKYGDTKSARSIMLVELKKLIEANPLFRDKLQFPNLKNSRLRTLINQSLN 180
            LENFRENEQLSKYGDTKSAR+IMLVELKKLIEANPLFRDKLQFPNLKNSRLRTLINQSLN
Sbjct: 121  LENFRENEQLSKYGDTKSARAIMLVELKKLIEANPLFRDKLQFPNLKNSRLRTLINQSLN 180

Query: 181  WQHQLCKNPRPNPDIKTLFVDHTCGQPNGARAPSPANNPLLGSLPKAGVFPPLGAHGPFQ 240
            WQHQLCKNPR NPDIKTLFVDH+CGQPNGARAPSPANNPLLGSLPKAG FPPLGAHGPFQ
Sbjct: 181  WQHQLCKNPRSNPDIKTLFVDHSCGQPNGARAPSPANNPLLGSLPKAGGFPPLGAHGPFQ 240

Query: 241  PTPAPVPTPLAGWMSNPPTVTHPAVSGG-AIGLGSPSIPAAALKHPRTPPTNPSVDYPSG 299
            P PAPVP PLAGWMS P TVTH AVSGG AIGLG+PSIPAA LKHPRTPPTN SVDYPSG
Sbjct: 241  PAPAPVPAPLAGWMSTPSTVTHSAVSGGGAIGLGAPSIPAA-LKHPRTPPTNLSVDYPSG 299

Query: 300  DSDHLSKRTRPIGISDEINLPVNVLPVSFTGHSHSHSHSQAFSTPEDLPKTVTRTLNQGS 359
            DSDH++KR RP+GISDE+NLPVNVLPVSF GH H H H QAF+ P+DLPK V RTLNQGS
Sbjct: 300  DSDHVAKRVRPMGISDEVNLPVNVLPVSFPGHGHGHGHGQAFNAPDDLPKVVARTLNQGS 359

Query: 360  SPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDP 419
            SPMSMDFHP+Q TLLLVGTNVGDIGLWEVGSRERLVLR FKVWDL ACSMPLQAAL KDP
Sbjct: 360  SPMSMDFHPLQLTLLLVGTNVGDIGLWEVGSRERLVLRIFKVWDLNACSMPLQAALAKDP 419

Query: 420  GVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQ 479
            GVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHG DEVRQHLEIDAHVGGVND+AFS PNKQ
Sbjct: 420  GVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGNDEVRQHLEIDAHVGGVNDLAFSTPNKQ 479

Query: 480  LCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWL 539
            LCVITCGDDKTIKVWDA+ GAK Y FEGHEAPVYS+CPH+KENIQFIFSTALDGKIKAWL
Sbjct: 480  LCVITCGDDKTIKVWDASTGAKLYTFEGHEAPVYSICPHYKENIQFIFSTALDGKIKAWL 539

Query: 540  YDNLGSRVDYEAPGRWCTTMAYSADGT--------------------------RTYQGFR 573
            YDNLGSRVDYEAPGRWCTTMAYSADGT                          RTY GFR
Sbjct: 540  YDNLGSRVDYEAPGRWCTTMAYSADGTRLFSCGTSKDGDSFIVEWNESEGAVKRTYLGFR 599

Query: 574  KRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLL 633
            K+S GVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLT+IDADGGLPASPRIRFNKDG LL
Sbjct: 600  KQSWGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTTIDADGGLPASPRIRFNKDGTLL 659

Query: 634  AVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSK--------------------- 672
            AVS NDNGIKILA +DGIRLLRTFENL++DASRTSE+                       
Sbjct: 660  AVSANDNGIKILANTDGIRLLRTFENLSFDASRTSESIAKVTLSASVVAIAGMVRWTCLF 719

Query: 673  -------------------------NGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQ 707
                                     NGD R+L DVKPR+TEESNDKSK+WKLTE++EP+Q
Sbjct: 720  IYSSIRILCSSNLHINYPSITQLIINGDARNLGDVKPRLTEESNDKSKIWKLTEINEPSQ 779

Query: 708  CRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQL 767
            CRSLRLPENLR TKISRLI+TNSGNAILALASNAIHLLWKWQR++RN+SGKATA V+PQL
Sbjct: 780  CRSLRLPENLRVTKISRLIYTNSGNAILALASNAIHLLWKWQRSDRNASGKATAGVSPQL 839

Query: 768  WQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPP 827
            WQP SGI+MTND TD+NPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTM TFMPPP
Sbjct: 840  WQPSSGILMTNDSTDTNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMTTFMPPP 899

Query: 828  PAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVS 887
            PAATFLAFHPQDNNIIAIGMDDS+IQIYNVRVDEVKSKLKGHSKRITGLAFSH LN+LVS
Sbjct: 900  PAATFLAFHPQDNNIIAIGMDDSTIQIYNVRVDEVKSKLKGHSKRITGLAFSHVLNMLVS 959

Query: 888  SGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFE 947
            SGAD+QLCVW+SDGWEKQK RFLQ+P GRTPTAQSDTRVQFHQDQIHFLVVHETQLAI+E
Sbjct: 960  SGADAQLCVWNSDGWEKQKARFLQVPAGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIYE 1019

Query: 948  TTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYL 1007
            TTKLECVKQWV RESSAPI+HA FSCDS LVYA FLDATVCVFSA NL+LRCRINP  YL
Sbjct: 1020 TTKLECVKQWVLRESSAPISHAVFSCDSHLVYASFLDATVCVFSAMNLRLRCRINPCTYL 1079

Query: 1008 PAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESEGKWGVPPPVDNGSTSSMP 1067
               V SSNVHPLVIAAHPQEPN+FALGLSDGGVHVFEPLESEGKWGVPPP +NGS SS+P
Sbjct: 1080 SPNV-SSNVHPLVIAAHPQEPNQFALGLSDGGVHVFEPLESEGKWGVPPPAENGSASSVP 1138

Query: 1068 ATPPVGGSGSDQAQR 1082
            ATP VG SGSDQAQR
Sbjct: 1139 ATPSVGPSGSDQAQR 1153

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357458875|ref|XP_003599718.1| WD repeat-containing protein, putative [Medicago truncatula] gi|357468121|ref|XP_003604345.1| WD repeat-containing protein, putative [Medicago truncatula] gi|355488766|gb|AES69969.1| WD repeat-containing protein, putative [Medicago truncatula] gi|355505400|gb|AES86542.1| WD repeat-containing protein, putative [Medicago truncatula]

 Score = 1953 bits (5060), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 946/1143 (82%), Positives = 1012/1143 (88%), Gaps = 66/1143 (5%)

Query: 1    MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDDVEKYLSGF 60
            MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWD+VEKYLSGF
Sbjct: 1    MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDEVEKYLSGF 60

Query: 61   TKVDDNRYSMKIFFEIRKQKYLEALDKHDRAKAVEILVKDLKVFSTFNEELFKEITQLLT 120
            TKVDDNRYSMKIFFEIRKQKYLEALDKHDR+KAVEILVKDLKVF+TFNEELFKEITQLLT
Sbjct: 61   TKVDDNRYSMKIFFEIRKQKYLEALDKHDRSKAVEILVKDLKVFATFNEELFKEITQLLT 120

Query: 121  LENFRENEQLSKYGDTKSARSIMLVELKKLIEANPLFRDKLQFPNLKNSRLRTLINQSLN 180
            LENFRENEQLSKYGDTKSAR+IMLVELKKLIEANPLFRDKLQFPNLKNSRLRTLINQSLN
Sbjct: 121  LENFRENEQLSKYGDTKSARAIMLVELKKLIEANPLFRDKLQFPNLKNSRLRTLINQSLN 180

Query: 181  WQHQLCKNPRPNPDIKTLFVDHTCGQPNGARAPSPANNPLLGSLPKAGVFPPLGAHGPFQ 240
            WQHQLCKNPRPNPDIKTLFVDH+CGQPNGARAPSPAN+PLLGSLPKAG FPPLGAHGPFQ
Sbjct: 181  WQHQLCKNPRPNPDIKTLFVDHSCGQPNGARAPSPANSPLLGSLPKAGGFPPLGAHGPFQ 240

Query: 241  PTPAPVPTPLAGWMSNPPTVTHPAVSG-GAIGLGSPSIPAAALKHPRTPPTNPSVDYPSG 299
            P PA VPT LAGWMSNP TV H AVSG GAIGLG+PS+P A LKHPRTPP NPSVDYPSG
Sbjct: 241  PNPAAVPTQLAGWMSNPTTVAHAAVSGAGAIGLGAPSMPGA-LKHPRTPPINPSVDYPSG 299

Query: 300  DSDHLSKRTRPIGISDEINLPVNVLPVSFTGHSHSHSHSQAFSTPEDLP--KTVTRTLNQ 357
            DSDH++KRTRP+GI+DE+NLPVNVL  +F GH HS    QAF+ P+DLP  KTVTRTLNQ
Sbjct: 300  DSDHVAKRTRPMGITDEVNLPVNVLSGTFPGHGHS----QAFNAPDDLPLPKTVTRTLNQ 355

Query: 358  GSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVK 417
            GSSPMSMDFHPVQQ+LLLVGTNVG I LWEVGSRE+LV RNFKVWDL ACSMP QAALVK
Sbjct: 356  GSSPMSMDFHPVQQSLLLVGTNVGGIALWEVGSREKLVSRNFKVWDLSACSMPFQAALVK 415

Query: 418  DPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPN 477
            DP VSVNRVIWSPDG+LFGVAYSRHIVQIYSYH GD+VRQHLEIDAHVGGVND+AFSHPN
Sbjct: 416  DPSVSVNRVIWSPDGALFGVAYSRHIVQIYSYHTGDDVRQHLEIDAHVGGVNDLAFSHPN 475

Query: 478  KQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKA 537
            KQLCVITCGDDKTIKVWDA +GAKQY FEGHEAPVYSVCPH+KENIQFIFSTALDGKIKA
Sbjct: 476  KQLCVITCGDDKTIKVWDAVSGAKQYTFEGHEAPVYSVCPHYKENIQFIFSTALDGKIKA 535

Query: 538  WLYDNLGSRVDYEAPGRWCTTMAYSADGTR--------------------------TYQG 571
            WLYDNLGSRVDY+APGRWCTTMAYSADGTR                          TYQG
Sbjct: 536  WLYDNLGSRVDYDAPGRWCTTMAYSADGTRLFSCGTSKDGESSIVEWNESEGAVKRTYQG 595

Query: 572  FRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGC 631
            FRKRS+GVVQFDTTKNRFLAAGDDFSIKFWDMD++QLLT++DADGGLPASPRIRFNKDG 
Sbjct: 596  FRKRSMGVVQFDTTKNRFLAAGDDFSIKFWDMDNIQLLTTVDADGGLPASPRIRFNKDGT 655

Query: 632  LLAVSTNDNGIKILATSDGIRLLRTFENLA-YDASRTSENSK------------------ 672
            LLAVS NDNGIKI+A +DGIRLLRT EN + YDASR SE +K                  
Sbjct: 656  LLAVSANDNGIKIVANADGIRLLRTLENNSMYDASRASEMAKPTINSMSSAAAATSAALA 715

Query: 673  ------------NGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRAT 720
                        NGD RS+ DVKPRI+EE+NDKSK+WKLTE++EP+ CRSL+LPEN+R  
Sbjct: 716  ERASSVAAIAGMNGDTRSMGDVKPRISEEANDKSKIWKLTEINEPSHCRSLKLPENVRVN 775

Query: 721  KISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDV 780
            KISRLI+TNSGNAILALASNAIHLLWKW R ERNSSGKA ASV  QLWQP SGI+MTND+
Sbjct: 776  KISRLIYTNSGNAILALASNAIHLLWKWPRNERNSSGKANASVPAQLWQPSSGILMTNDI 835

Query: 781  TDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDN 840
             DSNPE++VPCFALSKNDSYVMSASGGKISLFNMMTFKTM TFMPPPPAATFLAFHPQDN
Sbjct: 836  ADSNPEDSVPCFALSKNDSYVMSASGGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDN 895

Query: 841  NIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSD 900
            NIIAIGMDDSSIQIYNVRVDEVKSKLKGH+KRITGLAFSH LNVLVSSGAD+Q+CVW++D
Sbjct: 896  NIIAIGMDDSSIQIYNVRVDEVKSKLKGHTKRITGLAFSHVLNVLVSSGADAQICVWNTD 955

Query: 901  GWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPR 960
            GWEKQK RFLQ+P GRTP+AQSDTRVQFHQDQI FLVVHETQLAIFE TKLEC+KQW PR
Sbjct: 956  GWEKQKTRFLQLPPGRTPSAQSDTRVQFHQDQIQFLVVHETQLAIFEATKLECLKQWAPR 1015

Query: 961  ESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSS-SNVHPL 1019
            +SSAPI+HATFSCDSQL+YA FLDATVCVF+A+NL+LRCRINP AYLPA VSS SNV PL
Sbjct: 1016 DSSAPISHATFSCDSQLIYASFLDATVCVFNASNLRLRCRINPPAYLPASVSSNSNVQPL 1075

Query: 1020 VIAAHPQEPNEFALGLSDGGVHVFEPLESEGKWGVPPPVDNGSTSSMPATPPVGGSGSDQ 1079
            VIAAHP E N+FA+GLSDGGVHVFEPLESEGKWGVPPP +NGS+S+  A     G  SDQ
Sbjct: 1076 VIAAHPHEANQFAVGLSDGGVHVFEPLESEGKWGVPPPNENGSSSNNVAVATSVGLSSDQ 1135

Query: 1080 AQR 1082
            AQR
Sbjct: 1136 AQR 1138

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	1082
TAIR|locus:2036204	1131	TPL "TOPLESS" [Arabidopsis tha	0.523	0.500	0.854	0.0
TAIR|locus:2198888	1120	TPR1 "TOPLESS-related 1" [Arab	0.523	0.505	0.847	0.0
TAIR|locus:2086770	1131	TPR2 "TOPLESS-related 2" [Arab	0.648	0.620	0.594	0.0
TAIR|locus:2040100	740	AT2G25420 "AT2G25420" [Arabido	0.333	0.487	0.371	1.6e-91
DICTYBASE|DDB_G0278353	530	smu1 "suppressor of mec-8 and	0.146	0.298	0.305	4.6e-16
TAIR|locus:2159562	589	AT5G08560 "AT5G08560" [Arabido	0.175	0.322	0.246	1.2e-10
TAIR|locus:2172432	523	AT5G43920 "AT5G43920" [Arabido	0.171	0.355	0.253	2.2e-10
FB|FBgn0036354	391	Poc1 "Proteome of centrioles 1	0.069	0.191	0.307	3.3e-10
ASPGD|ASPL0000006405	1878	AN6960 [Emericella nidulans (t	0.143	0.082	0.281	1.1e-05
ASPGD|ASPL0000032162	1364	AN8468 [Emericella nidulans (t	0.285	0.226	0.236	6.2e-10

TAIR|locus:2036204 TPL "TOPLESS" [Arabidopsis thaliana (taxid:3702)]

 Score = 2597 (919.2 bits), Expect = 0., Sum P(3) = 0.
 Identities = 486/569 (85%), Positives = 519/569 (91%)

Query:     1 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDDVEKYLSGF 60
             MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWD+VEKYLSGF
Sbjct:     1 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDEVEKYLSGF 60

Query:    61 TKVDDNRYSMKIFFEIRKQKYLEALDKHDRAKAVEILVKDLKVFSTFNEELFKEITQLLT 120
             TKVDDNRYSMKIFFEIRKQKYLEALDKHDR KAV+ILVKDLKVFSTFNEELFKEITQLLT
Sbjct:    61 TKVDDNRYSMKIFFEIRKQKYLEALDKHDRPKAVDILVKDLKVFSTFNEELFKEITQLLT 120

Query:   121 LENFRENEQLSKYGDTKSARSIMLVELKKLIEANPLFRDKLQFPNLKNSRLRTLINQSLN 180
             LENFRENEQLSKYGDTKSAR+IMLVELKKLIEANPLFRDKLQFP L+NSRLRTLINQSLN
Sbjct:   121 LENFRENEQLSKYGDTKSARAIMLVELKKLIEANPLFRDKLQFPTLRNSRLRTLINQSLN 180

Query:   181 WQHQLCKNPRPNPDIKTLFVDHTCGQPNGARAPSPANNPLLGSLPKAGVFPPLGAHGXXX 240
             WQHQLCKNPRPNPDIKTLFVDH+CG PNGARAPSP NNPLLG +PKAG FPPLGAHG   
Sbjct:   181 WQHQLCKNPRPNPDIKTLFVDHSCGPPNGARAPSPVNNPLLGGIPKAGGFPPLGAHGPFQ 240

Query:   241 XXXXXXXXXLAGWMSNPPTVTHPAVSGGAIGLGSPSIPAAALKHPRTPPTNPSVDYPSGD 300
                      LAGWMS+P +V HPAVS GAI LG PSIPAA LKHPRTPPTN S+DYPS D
Sbjct:   241 PTASPVPTPLAGWMSSPSSVPHPAVSAGAIALGGPSIPAA-LKHPRTPPTNASLDYPSAD 299

Query:   301 SDHLSKRTRPIGISDEINLPVNVLPVSFTGXXXXXXXXQAFSTPEDLPKTVTRTLNQGSS 360
             S+H+SKRTRP+GISDE+NL VN+LP+SF+G         AF  P+DLPKTV RTL+QGSS
Sbjct:   300 SEHVSKRTRPMGISDEVNLGVNMLPMSFSGQAHGHS--PAFKAPDDLPKTVARTLSQGSS 357

Query:   361 PMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPG 420
             PMSMDFHP++QTLLLVGTNVGDIGLWEVGSRERLV + FKVWDL  CSMPLQAALVK+P 
Sbjct:   358 PMSMDFHPIKQTLLLVGTNVGDIGLWEVGSRERLVQKTFKVWDLSKCSMPLQAALVKEPV 417

Query:   421 VSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQL 480
             VSVNRVIWSPDGSLFGVAYSRHIVQ+YSYHGG+++RQHLEIDAHVGGVNDI+FS PNKQL
Sbjct:   418 VSVNRVIWSPDGSLFGVAYSRHIVQLYSYHGGEDMRQHLEIDAHVGGVNDISFSTPNKQL 477

Query:   481 CVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLY 540
             CVITCGDDKTIKVWDA  G K++ FEGHEAPVYSVCPH+KENIQFIFSTALDGKIKAWLY
Sbjct:   478 CVITCGDDKTIKVWDAATGVKRHTFEGHEAPVYSVCPHYKENIQFIFSTALDGKIKAWLY 537

Query:   541 DNLGSRVDYEAPGRWCTTMAYSADGTRTY 569
             DN+GSRVDY+APGRWCTTMAYSADGTR +
Sbjct:   538 DNMGSRVDYDAPGRWCTTMAYSADGTRLF 566

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0005515 "protein binding" evidence=IPI

GO:0010072 "primary shoot apical meristem specification" evidence=IGI;IMP

GO:0009733 "response to auxin stimulus" evidence=IPI

GO:0010051 "xylem and phloem pattern formation" evidence=IGI

GO:0042803 "protein homodimerization activity" evidence=IPI

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=IMP

TAIR|locus:2198888 TPR1 "TOPLESS-related 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 2564 (907.6 bits), Expect = 0., Sum P(2) = 0.
 Identities = 482/569 (84%), Positives = 515/569 (90%)

Query:     1 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDDVEKYLSGF 60
             MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWD+VEKYLSGF
Sbjct:     1 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDEVEKYLSGF 60

Query:    61 TKVDDNRYSMKIFFEIRKQKYLEALDKHDRAKAVEILVKDLKVFSTFNEELFKEITQLLT 120
             TKVDDNRYSMKIFFEIRKQKYLEALD+HDR KAV+ILVKDLKVFSTFNEELFKEITQLLT
Sbjct:    61 TKVDDNRYSMKIFFEIRKQKYLEALDRHDRPKAVDILVKDLKVFSTFNEELFKEITQLLT 120

Query:   121 LENFRENEQLSKYGDTKSARSIMLVELKKLIEANPLFRDKLQFPNLKNSRLRTLINQSLN 180
             LENFRENEQLSKYGDTKSAR+IMLVELKKLIEANPLFRDKLQFP L+ SRLRTLINQSLN
Sbjct:   121 LENFRENEQLSKYGDTKSARAIMLVELKKLIEANPLFRDKLQFPTLRTSRLRTLINQSLN 180

Query:   181 WQHQLCKNPRPNPDIKTLFVDHTCGQPNGARAPSPANNPLLGSLPKAGVFPPLGAHGXXX 240
             WQHQLCKNPRPNPDIKTLFVDH+C  PN ARAPSP NNPLLGSLPKA  FPPLGAHG   
Sbjct:   181 WQHQLCKNPRPNPDIKTLFVDHSCRLPNDARAPSPVNNPLLGSLPKAEGFPPLGAHGPFQ 240

Query:   241 XXXXXXXXXLAGWMSNPPTVTHPAVSGGAIGLGSPSIPAAALKHPRTPPTNPSVDYPSGD 300
                      LAGWMS+P +V HPAVSGG I LG+PSI AA LKHPRTPP+N +VDYPSGD
Sbjct:   241 PTPSPVPTPLAGWMSSPSSVPHPAVSGGPIALGAPSIQAA-LKHPRTPPSNSAVDYPSGD 299

Query:   301 SDHLSKRTRPIGISDEINLPVNVLPVSFTGXXXXXXXXQAFSTPEDLPKTVTRTLNQGSS 360
             SDH+SKRTRP+GISDE++L VN+LP++F G        Q F  P+DLPKTV RTL+QGSS
Sbjct:   300 SDHVSKRTRPMGISDEVSLGVNMLPMTFPGQAHGHN--QTFKAPDDLPKTVARTLSQGSS 357

Query:   361 PMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPG 420
             PMSMDFHP++QTLLLVGTNVGDIGLWEVGSRERLV + FKVWDL  CSMPLQAALVK+P 
Sbjct:   358 PMSMDFHPIKQTLLLVGTNVGDIGLWEVGSRERLVQKTFKVWDLSKCSMPLQAALVKEPV 417

Query:   421 VSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQL 480
             VSVNRVIWSPDGSLFGVAYSRHIVQ+YSYHGG+++RQHLEIDAHVGGVNDIAFS PNKQL
Sbjct:   418 VSVNRVIWSPDGSLFGVAYSRHIVQLYSYHGGEDMRQHLEIDAHVGGVNDIAFSTPNKQL 477

Query:   481 CVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLY 540
             CV TCGDDKTIKVWDA  G K+Y FEGHEAPVYS+CPH+KENIQFIFSTALDGKIKAWLY
Sbjct:   478 CVTTCGDDKTIKVWDAATGVKRYTFEGHEAPVYSICPHYKENIQFIFSTALDGKIKAWLY 537

Query:   541 DNLGSRVDYEAPGRWCTTMAYSADGTRTY 569
             DN+GSRVDYEAPGRWCTTMAYSADGTR +
Sbjct:   538 DNMGSRVDYEAPGRWCTTMAYSADGTRLF 566

GO:0005634 "nucleus" evidence=ISM

GO:0010072 "primary shoot apical meristem specification" evidence=IGI

GO:0005829 "cytosol" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2086770 TPR2 "TOPLESS-related 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 2230 (790.1 bits), Expect = 0., Sum P(2) = 0.
 Identities = 453/762 (59%), Positives = 547/762 (71%)

Query:     1 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDDVEKYLSGF 60
             MSSLSRELVFLILQFLDEEKFKE+VHKLEQESGFFFN+KYFE++   G WD+VEKYLSGF
Sbjct:     1 MSSLSRELVFLILQFLDEEKFKESVHKLEQESGFFFNIKYFEEKALAGEWDEVEKYLSGF 60

Query:    61 TKVDDNRYSMKIFFEIRKQKYLEALDKHDRAKAVEILVKDLKVFSTFNEELFKEITQLLT 120
             TKVDDNRYSMKIFFEIRKQKYLEALD++DRAKAVEIL KDLKVF+TFNEEL+KEITQLLT
Sbjct:    61 TKVDDNRYSMKIFFEIRKQKYLEALDRNDRAKAVEILAKDLKVFATFNEELYKEITQLLT 120

Query:   121 LENFRENEQLSKYGDTKSARSIMLVELKKLIEANPLFRDKLQFPNLKNSRLRTLINQSLN 180
             LENFRENEQLSKYGDTKSARSIM  ELKKLIEANPLFR+KL FP+ K SRLRTLINQSLN
Sbjct:   121 LENFRENEQLSKYGDTKSARSIMYTELKKLIEANPLFREKLAFPSFKASRLRTLINQSLN 180

Query:   181 WQHQLCKNPRPNPDIKTLFVDHTCGQPNGARAPSPANNPLLGSLPKAGVFPPLGAHGXXX 240
             WQHQLCKNPRPNPDIKTLF+DH+C   NGARA +P N P+  ++ +   F PLG HG   
Sbjct:   181 WQHQLCKNPRPNPDIKTLFLDHSCSPSNGARALTPVNLPV-AAVARPSNFVPLGVHGGPF 239

Query:   241 XXXXX---XXXXLAGWMSNP-PTVTHPAVSGGAIGLGSPSIPAAA--LKHPRTPPTNPSV 294
                         LAGWM+NP P+ + P  SG       P  P+    LKHPR P  +  +
Sbjct:   240 QSNPAPAPNANALAGWMANPNPSSSVP--SGVVAASPFPMQPSQVNELKHPRAPSNSLGL 297

Query:   295 -DYPSGDSDHLSKRTRPIGISDEINLPVNVLPVSFTGXXXXXXXXQAFSTPEDLPKTVTR 353
              DY S D + L KR R    S+E+  P +  P +               + +DLP+ V  
Sbjct:   298 MDYQSADHEQLMKRLRSAQTSNEVTYPAHSHPPA---------------SLDDLPRNVVS 342

Query:   354 TLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQA 413
             T+ QGS  +SMDFHP   TLL VG + G++ LWEVGSRE++V   FK+W++ ACS+  Q 
Sbjct:   343 TIRQGSVVISMDFHPSHHTLLAVGCSSGEVTLWEVGSREKVVTEPFKIWNMAACSVIFQG 402

Query:   414 ALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAF 473
             ++VK+P +SV RV WSPDG+L GV++++H++ +Y+Y G D +RQHLEIDAHVG VND+AF
Sbjct:   403 SIVKEPSISVTRVAWSPDGNLLGVSFTKHLIHVYAYQGSD-LRQHLEIDAHVGCVNDLAF 461

Query:   474 SHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDG 533
             +HPNKQ+CV+TCGDDK IKVWD + G K + FEGHEAPVYS+CPH KENIQFIFSTALDG
Sbjct:   462 AHPNKQMCVVTCGDDKLIKVWDLS-GKKLFTFEGHEAPVYSICPHQKENIQFIFSTALDG 520

Query:   534 KIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTR-------------------------- 567
             KIKAWLYDN+GSRVDY+APG+WCTTM YSADG+R                          
Sbjct:   521 KIKAWLYDNVGSRVDYDAPGQWCTTMLYSADGSRLFSCGTSKEGDSFLVEWNESEGALKR 580

Query:   568 TYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFN 627
             TY GFRK+S GVVQFDTT+NRFLA G+D  IKFW+MD+  LLT ++A+GGLP  PR+RFN
Sbjct:   581 TYLGFRKKSAGVVQFDTTRNRFLAVGEDNQIKFWNMDNTNLLTVVEAEGGLPNLPRLRFN 640

Query:   628 KDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKNGDVRSLADVKPRIT 687
             KDG LLAV+T DNG KILA +DG+R LR FE  +++AS+ S + K       + + P I 
Sbjct:   641 KDGNLLAVTTADNGFKILANTDGLRTLRAFEARSFEASKASIDMKVSTSAMASSISPAIG 700

Query:   688 E-ESNDKSKVWKLTELSEPN----QCRSLRLPENLRATKISR 724
             + E  D     + T +  PN      R++  P NL +   S+
Sbjct:   701 KIEHMDAGSPARPTPI--PNGIEAMSRTMEKPRNLDSVDKSK 740

GO:0005634 "nucleus" evidence=ISM

GO:0010072 "primary shoot apical meristem specification" evidence=IGI

GO:0005515 "protein binding" evidence=IPI

GO:0000226 "microtubule cytoskeleton organization" evidence=RCA

GO:0000911 "cytokinesis by cell plate formation" evidence=RCA

GO:0000956 "nuclear-transcribed mRNA catabolic process" evidence=RCA

TAIR|locus:2040100 AT2G25420 "AT2G25420" [Arabidopsis thaliana (taxid:3702)]

 Score = 604 (217.7 bits), Expect = 1.6e-91, Sum P(2) = 1.6e-91
 Identities = 139/374 (37%), Positives = 205/374 (54%)

Query:   698 KLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSG 757
             K  E+ +P+QC +L LP+     KI+RL ++ SG+ ILALA +A H LW W  ++ N   
Sbjct:   368 KPNEIKDPSQCNALVLPDCFSEEKIARLTYSPSGDYILALAEDATHKLWTWSSSQ-NEFC 426

Query:   758 KATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNXXXX 817
             K      P+L QP SG  M N++  S  +++  CFA+    SY+ S SGGKI++F+    
Sbjct:   427 KENVYPKPRLHQPQSGKTMENEMATS-VQKSTSCFAVK--GSYLFSTSGGKIAVFDLKNF 483

Query:   818 XXXXXXXXXXXXXXXXXXHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLA 877
                                P D  ++A+G+DD SI I+ +   +VK KL+GH ++IT LA
Sbjct:   484 EKVASFGSPTPMATYFIFIPGD--LLAVGLDDGSIFIHCLSSRKVKEKLEGHDQKITCLA 541

Query:   878 FSHALNVLVSSGADSQLCVWSSDGWEK--QKNRFLQIPTGRTPTAQS-DTRVQFHQDQIH 934
             FS   NVLVSS +D +LC+WS+  W K   KN   +        + S  T +QF   QI 
Sbjct:   542 FSRCFNVLVSSDSDGKLCLWSTKSWVKLTSKNSTRKFCNRSNLESTSLVTHIQFDPYQIE 601

Query:   935 FLVVHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAAN 994
              LVVH+  + ++E   L+C  QW+P  S   IT AT+S D +++Y  F   ++ +  +  
Sbjct:   602 LLVVHDGWIGLYEVRTLDCRLQWIPDASDPAITSATYSSDGEIIYVGFRCGSIKIVDSKT 661

Query:   995 LKLRCRINPSAYLPAGVS--SSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESEGKW 1052
                 C+IN +++     S  S  V+P V+AAHP  PN+ + GLS+G V V +PL S G W
Sbjct:   662 FMTLCQINLTSFTQLSTSNISLEVYPTVVAAHPSHPNQISAGLSNGKVIVLQPLWSGG-W 720

Query:  1053 GVPPPV-DNGSTSS 1065
             G   P+ DNG  S+
Sbjct:   721 GEAAPLEDNGDYSN 734

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0080008 "Cul4-RING ubiquitin ligase complex" evidence=ISS

GO:0006346 "methylation-dependent chromatin silencing" evidence=RCA

GO:0007267 "cell-cell signaling" evidence=RCA

GO:0009616 "virus induced gene silencing" evidence=RCA

GO:0009855 "determination of bilateral symmetry" evidence=RCA

GO:0010014 "meristem initiation" evidence=RCA

GO:0010050 "vegetative phase change" evidence=RCA

GO:0010073 "meristem maintenance" evidence=RCA

GO:0010267 "production of ta-siRNAs involved in RNA interference" evidence=RCA

GO:0031048 "chromatin silencing by small RNA" evidence=RCA

GO:0035196 "production of miRNAs involved in gene silencing by miRNA" evidence=RCA

GO:0051567 "histone H3-K9 methylation" evidence=RCA

DICTYBASE|DDB_G0278353 smu1 "suppressor of mec-8 and unc-52-like protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 136 (52.9 bits), Expect = 4.6e-16, Sum P(3) = 4.6e-16
 Identities = 58/190 (30%), Positives = 90/190 (47%)

Query:     5 SRELVFLILQFLDEEKFKETVHKLEQESGFFFNM----KYFEDEVHNGNWDDVEKYLSGF 60
             S++++ LILQFL E     ++  L++E+G   N     + F ++V NGNWD V       
Sbjct:    16 SQDVIKLILQFLKENSLGNSLTALQEETGINLNAVDSKETFLNDVKNGNWDSV------L 69

Query:    61 TKVDDNRYSMKIFFEIRKQKYLEALDKHDRAKAVEILVKDLKVFSTFNEELFKEITQLLT 120
             T V   R S  +  ++ +Q  +E L  H   K  E+    ++     N     +  + L 
Sbjct:    70 TVVSTLRLSTTLLMDLYEQ-IVELL--H--LKEYELCKYLIRKTEPLNYMKLNQQERYLK 124

Query:   121 LENFRENEQLS-----KYGDTKSARSIMLVELKKLIEANPLFRDKLQFPNLKNSRLRTLI 175
             LEN  + E +      KYG T   R       K+LIE   L  + +  P+   SRL +L+
Sbjct:   125 LENHLQREYIDLGDFYKYGITTEKRR------KQLIEQ--LNNEIITVPS---SRLLSLL 173

Query:   176 NQSLNWQ-HQ 184
             +QSL+WQ HQ
Sbjct:   174 SQSLHWQKHQ 183

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

TAIR|locus:2159562 AT5G08560 "AT5G08560" [Arabidopsis thaliana (taxid:3702)]

 Score = 132 (51.5 bits), Expect = 1.2e-10, Sum P(4) = 1.2e-10
 Identities = 50/203 (24%), Positives = 90/203 (44%)

Query:     7 ELVFLILQFLDEEKFKETVHKLEQESGFFFN---MKYFEDEVHNGNWDDVEKYLSGFTKV 63
             E V +I + L    + +T   LE+ESG   +   +K F  +V +G WD   K L      
Sbjct:    67 EFVRIITRALYSLGYDKTGAMLEEESGISLHNSTIKLFLQQVKDGKWDQSVKTLHRIGFP 126

Query:    64 DDNRYSMKIFFEIRKQKYLEALDKHDRAKAVEILVKDLKVFSTFNEELFKEITQLLTLEN 123
             D+       F  + +QK+LE L     A A+  L  ++       + + +  + L++  +
Sbjct:   127 DEKAVKAASFL-LLEQKFLEFLKVEKIADALRTLRNEMAPLRINTKRVHELASSLISPSS 185

Query:   124 FRENEQLSKYGDTKSARSIMLVELKKLIEANPLFRDKLQFPNLKNSRLRTLINQSLNWQH 183
             F  +   +   ++ ++RS +L EL+ L+ A+ +  +K         RL  L+  SL+ Q 
Sbjct:   186 FISHTTSTPGKESVNSRSKVLEELQTLLPASVIIPEK---------RLECLVENSLHIQR 236

Query:   184 QLCKNPRPNPDIKTLFVDHTCGQ 206
               C          +L+ DH CG+
Sbjct:   237 DSCVFHNTLDSDLSLYSDHQCGK 259

GO:0000166 "nucleotide binding" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0007062 "sister chromatid cohesion" evidence=RCA

GO:0007131 "reciprocal meiotic recombination" evidence=RCA

GO:0009630 "gravitropism" evidence=RCA

GO:0009887 "organ morphogenesis" evidence=RCA

GO:0009888 "tissue development" evidence=RCA

GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=RCA

GO:0010359 "regulation of anion channel activity" evidence=RCA

GO:0010413 "glucuronoxylan metabolic process" evidence=RCA

GO:0010638 "positive regulation of organelle organization" evidence=RCA

GO:0016926 "protein desumoylation" evidence=RCA

GO:0031048 "chromatin silencing by small RNA" evidence=RCA

GO:0033044 "regulation of chromosome organization" evidence=RCA

GO:0042138 "meiotic DNA double-strand break formation" evidence=RCA

GO:0045132 "meiotic chromosome segregation" evidence=RCA

GO:0045492 "xylan biosynthetic process" evidence=RCA

GO:0050665 "hydrogen peroxide biosynthetic process" evidence=RCA

TAIR|locus:2172432 AT5G43920 "AT5G43920" [Arabidopsis thaliana (taxid:3702)]

 Score = 118 (46.6 bits), Expect = 2.2e-10, Sum P(3) = 2.2e-10
 Identities = 52/205 (25%), Positives = 90/205 (43%)

Query:     7 ELVFLILQFLDEEKFKETVHKLEQESGFFF---NMKYFEDEVHNGNWDDVEKYLSGF--T 61
             E + +++Q L    FK +   LE ES   +   + ++ E +V +GNWD   + L      
Sbjct:    19 EFIRILVQCLYSLGFKNSASCLEFESKILYKTADSEFLEKQVLSGNWDSCVQVLDRIFDN 78

Query:    62 KVDDNRYSMKIFFEIRKQKYLEALDKHDRAKAVEILVKDLKVFSTFNEELFKEITQLLTL 121
              +DD R +    + + KQ  LE L + D + A+ +L K   +     E++ +    ++  
Sbjct:    79 SMDDTRNTA--LYLVFKQCLLEYLKRGDVSLALNVLRKQAPLLRMGKEKIHRLACDIVYS 136

Query:   122 ENFRENEQLSKYGDTKSARSIMLVELKKLIEANPLFRDKLQFPNLKNSRLRTLINQSLNW 181
             +     E  +        R  +LVEL+KLI   PL    +  P     RL  L+  ++  
Sbjct:   137 KEMESGEVDNCL--VLDLRRKLLVELEKLI---PL---PIVIPE---RRLEHLVETAVMD 185

Query:   182 QHQLCKNPRPNPDIKTLFVDHTCGQ 206
             Q   C     + D  +L+ DH CG+
Sbjct:   186 QIDTCMYHN-SCDAVSLYKDHCCGR 209

GO:0000166 "nucleotide binding" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

FB|FBgn0036354 Poc1 "Proteome of centrioles 1" [Drosophila melanogaster (taxid:7227)]

 Score = 92 (37.4 bits), Expect = 3.3e-10, Sum P(3) = 3.3e-10
 Identities = 24/78 (30%), Positives = 39/78 (50%)

Query:   580 VQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTND 639
             V FD+T +  L A DD S K W +   Q ++S         S +  F+ +G L+A +++D
Sbjct:   108 VDFDSTGHLMLTASDDKSAKIWRVARRQFVSSFAQQNNWVRSAK--FSPNGKLVATASDD 165

Query:   640 NGIKILATSDGIRLLRTF 657
               ++I     G   +RTF
Sbjct:   166 KSVRIYDVDSG-ECVRTF 182

GO:0051297 "centrosome organization" evidence=IMP

ASPGD|ASPL0000006405 AN6960 [Emericella nidulans (taxid:162425)]

 Score = 146 (56.5 bits), Expect = 1.1e-05, P = 1.1e-05
 Identities = 47/167 (28%), Positives = 79/167 (47%)

Query:   397 RNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVR 456
             R  K+W   A +  LQ  L +     V  V++S D  L   A     V+I+       ++
Sbjct:   453 RTVKIWH--AATGSLQRTL-EGHNDWVRSVVFSHDSRLIASASDDMTVKIWDT-ATVPLQ 508

Query:   457 QHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVC 516
              +LE  +H   V  + FSH ++ L   +  DD T+K+WD   G+ +   EGH+  V SV 
Sbjct:   509 NNLE--SHDNWVRSVVFSHDSRLLA--SASDDMTVKIWDTATGSLENTLEGHDDRVNSVS 564

Query:   517 PHHKENIQFIFSTALDGKIKAWLYDNLGS-RVDYEAPGRWCTTMAYS 562
                  + + + S + DG +K W Y   G+ +  ++  GR   ++A+S
Sbjct:   565 --FSPDSRLLASASDDGTVKIW-YAATGTVQHTFDGSGRVAISLAFS 608

GO:0055085 "transmembrane transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0030001 "metal ion transport" evidence=IEA

GO:0046873 "metal ion transmembrane transporter activity" evidence=IEA

ASPGD|ASPL0000032162 AN8468 [Emericella nidulans (taxid:162425)]

 Score = 184 (69.8 bits), Expect = 6.2e-10, P = 6.2e-10
 Identities = 81/343 (23%), Positives = 150/343 (43%)

Query:   580 VQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTND 639
             V F     + ++   D ++K WD  + +LL ++D   G   S  + F+ DG LLA  + D
Sbjct:   756 VVFSPDGKQLVSGSYDDTVKIWDPATGELLQTLDGHSGTVES--LAFSPDGKLLASGSYD 813

Query:   640 NGIKILATSDGIRLLRTFENLAYDASRTSENSKNGDVRSLADVKPRITEESNDKS-KVWK 698
             N I +  ++ G  LL+TFE   +             V    D K  +   S+D + K+W 
Sbjct:   814 NTIDLWDSATG-ELLQTFEGHPHSI---------WSVAFAPDGK-ELASASDDSTIKIWD 862

Query:   699 LT--ELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWK-------WQ 749
             L   EL +     S  +  ++  +   +L+ ++S ++ + + + A   L +       W 
Sbjct:   863 LATGELQQTLDSHSQSV-RSVAFSPDGKLLASSSLDSTIKVWNPATGELQQSLEGRSGWV 921

Query:   750 RTERNS-SGKATASVAPQ----LWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSA 804
             ++   S  GK  AS + +    LW P +G ++    T     ++V   A S +   + S+
Sbjct:   922 KSVAFSPDGKKLASGSEKNTVKLWNPATGELLQ---TLEGHSQSVRSVAFSPDGKQLASS 978

Query:   805 SGGK-ISLFNXXXXXXXXXXXXXXXXXXXXXXHPQDNNIIAIGMDDSSIQIYNVRVDEVK 863
             S    I L+N                       P   ++++ G DD++I+++++   E++
Sbjct:   979 SSDTTIKLWNSTTGELQQTFKGHDLWIRAVAFSPDGKHLVS-GSDDNTIKLWDLATSELQ 1037

Query:   864 SKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQK 906
               L+ HS+ +  +AFS     L SS  DS + +W S   E Q+
Sbjct:  1038 QSLEDHSRSVHAVAFSPDDKQLASSSLDSTIKLWDSATGELQR 1080

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q0WV90	TPR1_ARATH	No assigned EC number	0.8156	0.9972	0.9633	no	no
Q94AI7	TPL_ARATH	No assigned EC number	0.8130	0.9972	0.9540	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: estExt_Genewise1_v1.C_440031 hypothetical protein (1172 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	1082
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	7e-24
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	5e-23
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	6e-21
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	6e-19
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	2e-17
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	2e-17
smart00668	58	smart00668, CTLH, C-terminal to LisH motif	2e-15
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	3e-14
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	6e-13
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	9e-13
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	5e-12
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	1e-11
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	6e-10
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	1e-09
smart00667	34	smart00667, LisH, Lissencephaly type-1-like homolo	5e-06
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	6e-06
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	6e-06
smart00320	40	smart00320, WD40, WD40 repeats	1e-05
smart00320	40	smart00320, WD40, WD40 repeats	2e-05
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	4e-05
pfam10607	144	pfam10607, CLTH, CTLH/CRA C-terminal to LisH motif	3e-04
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	0.001

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score =  102 bits (257), Expect = 7e-24
 Identities = 60/245 (24%), Positives = 96/245 (39%), Gaps = 32/245 (13%)

Query: 422 SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLC 481
            V  V +SPDG L         ++++    G+ +R  L+   H G V D+A S     L 
Sbjct: 11  GVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRT-LK--GHTGPVRDVAASADGTYL- 66

Query: 482 VITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYD 541
             +   DKTI++WD   G       GH + V SV      + + + S++ D  IK W  +
Sbjct: 67  -ASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSP--DGRILSSSSRDKTIKVWDVE 123

Query: 542 NLGSRVDYEAPGRWCTTMAY----------SADGT------------RTYQGFRKRSLGV 579
                        W  ++A+          S DGT             T  G        
Sbjct: 124 TGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNS- 182

Query: 580 VQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTND 639
           V F     + L++  D +IK WD+ + + L ++        S  + F+ DG LLA  + D
Sbjct: 183 VAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNS--VAFSPDGYLLASGSED 240

Query: 640 NGIKI 644
             I++
Sbjct: 241 GTIRV 245

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score =  100 bits (250), Expect = 5e-23
 Identities = 64/325 (19%), Positives = 101/325 (31%), Gaps = 92/325 (28%)

Query: 362 MSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGV 421
             + F P  + L               GS +  +    KVWDL    +      +K    
Sbjct: 13  TCVAFSPDGKLLA-------------TGSGDGTI----KVWDLETGELLRT---LKGHTG 52

Query: 422 SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVR---QHLE------------------ 460
            V  V  S DG+      S   ++++    G+ VR    H                    
Sbjct: 53  PVRDVAASADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSS 112

Query: 461 ------------------IDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQ 502
                             +  H   VN +AFS       V +   D TIK+WD   G   
Sbjct: 113 RDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTF--VASSSQDGTIKLWDLRTGKCV 170

Query: 503 YIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYS 562
               GH   V SV          + S++ DG IK W                   ++A+S
Sbjct: 171 ATLTGHTGEVNSVAFSPDGE--KLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFS 228

Query: 563 ADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGD-DFSIKFWDMDSVQLLTSIDADGGLPAS 621
            DG                        LA+G  D +I+ WD+ + + + ++        +
Sbjct: 229 PDG----------------------YLLASGSEDGTIRVWDLRTGECVQTLSG----HTN 262

Query: 622 P--RIRFNKDGCLLAVSTNDNGIKI 644
               + ++ DG  LA  + D  I+I
Sbjct: 263 SVTSLAWSPDGKRLASGSADGTIRI 287

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 93.9 bits (234), Expect = 6e-21
 Identities = 68/303 (22%), Positives = 105/303 (34%), Gaps = 68/303 (22%)

Query: 318 NLPVNVLPVSFTGHSH-------SHSHSQAFSTPEDLPKTV----------TRTLNQGSS 360
           +L    L  +  GH+        S   +   S   D  KT+           RTL   +S
Sbjct: 37  DLETGELLRTLKGHTGPVRDVAASADGTYLASGSSD--KTIRLWDLETGECVRTLTGHTS 94

Query: 361 P-MSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDP 419
              S+ F P    +L   +    I +W+V + +              C   L+     D 
Sbjct: 95  YVSSVAFSP-DGRILSSSSRDKTIKVWDVETGK--------------CLTTLRGH--TDW 137

Query: 420 GVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQ 479
              VN V +SPDG+    +     ++++    G  V        H G VN +AFS   ++
Sbjct: 138 ---VNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATL---TGHTGEVNSVAFSPDGEK 191

Query: 480 LCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWL 539
           L   +   D TIK+WD + G       GHE  V SV       +  + S + DG I+ W 
Sbjct: 192 LL--SSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYL--LASGSEDGTIRVWD 247

Query: 540 YDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIK 599
                            T++A+S DG                      R  +   D +I+
Sbjct: 248 LRTGECVQTLSGHTNSVTSLAWSPDG---------------------KRLASGSADGTIR 286

Query: 600 FWD 602
            WD
Sbjct: 287 IWD 289

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 90.9 bits (224), Expect = 6e-19
 Identities = 96/461 (20%), Positives = 176/461 (38%), Gaps = 72/461 (15%)

Query: 454 EVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQY--IFEGHEAP 511
                L +  H   +  IAFS   + L   +   D TIK+WD  NG K    +   H++ 
Sbjct: 54  PDLSSLLLRGHEDSITSIAFSPDGELLL--SGSSDGTIKLWDLDNGEKLIKSLEGLHDSS 111

Query: 512 VYSVCPHHKE-NIQFIFSTALDGKIKAWLYDNLGSRV-DYEAPGRWCTTMAYSADGTRTY 569
           V  +     + N   + S++LDG +K W     G  +   E      T++A+S DG    
Sbjct: 112 VSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDG---- 167

Query: 570 QGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKD 629
                           K     +  D +IK WD+ + + L+++       +S  + F+ D
Sbjct: 168 ----------------KLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSS--LAFSPD 209

Query: 630 G-CLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKNGDVRSLADVKPRITE 688
           G  L+A  ++D  I++   S G  L  T     +  S  S  S +G +          + 
Sbjct: 210 GGLLIASGSSDGTIRLWDLSTGKLLRSTLSG--HSDSVVSSFSPDGSLL--------ASG 259

Query: 689 ESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKW 748
            S+   ++W L   S   +  S         + +  + F+  G  + + +S+    LW  
Sbjct: 260 SSDGTIRLWDLRSSSSLLRTLSGHS------SSVLSVAFSPDGKLLASGSSDGTVRLW-- 311

Query: 749 QRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASG-- 806
                +       S                 +T    E  V   + S + S ++S     
Sbjct: 312 -----DLETGKLLSS----------------LTLKGHEGPVSSLSFSPDGSLLVSGGSDD 350

Query: 807 GKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKL 866
           G I L+++ T K + T          ++F P D  +++ G  D +++++++    +   L
Sbjct: 351 GTIRLWDLRTGKPLKTLEGHSNV-LSVSFSP-DGRVVSSGSTDGTVRLWDLSTGSLLRNL 408

Query: 867 KGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKN 907
            GH+ R+T L FS     L S  +D+ + +W      K  +
Sbjct: 409 DGHTSRVTSLDFSPDGKSLASGSSDNTIRLWDLKTSLKSVS 449

Length = 466

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 83.5 bits (207), Expect = 2e-17
 Identities = 51/203 (25%), Positives = 77/203 (37%), Gaps = 32/203 (15%)

Query: 458 HLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSV-- 515
              +  H GGV  +AF  P+ +L + T   D TIKVWD   G      +GH  PV  V  
Sbjct: 2   RRTLKGHTGGVTCVAF-SPDGKL-LATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAA 59

Query: 516 CPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKR 575
                    ++ S + D  I+ W         D E                RT  G    
Sbjct: 60  SADGT----YLASGSSDKTIRLW---------DLETGEC-----------VRTLTGHTSY 95

Query: 576 SLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAV 635
               V F        ++  D +IK WD+++ + LT++        S  + F+ DG  +A 
Sbjct: 96  VSS-VAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNS--VAFSPDGTFVAS 152

Query: 636 STNDNGIKILATSDGIRLLRTFE 658
           S+ D  IK+     G + + T  
Sbjct: 153 SSQDGTIKLWDLRTG-KCVATLT 174

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 86.3 bits (212), Expect = 2e-17
 Identities = 82/386 (21%), Positives = 144/386 (37%), Gaps = 49/386 (12%)

Query: 397 RNFKVWDLGACSMPLQAALVKDPGVSVNRVIW-SPDGSLFGVAYSRHIVQIYSYHGGDEV 455
              K+WDL      +++ L      SV+++   SPDG+   +A S     +  +      
Sbjct: 87  GTIKLWDLDNGEKLIKS-LEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPG 145

Query: 456 RQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSV 515
           +    ++ H   V  +AFS P+ +L       D TIK+WD   G       GH  PV S+
Sbjct: 146 KLIRTLEGHSESVTSLAFS-PDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSL 204

Query: 516 CPHHKENIQFIFSTALDGKIKAW-----------LYDNLGSRVDYEAPGRWCTTMAYSAD 564
                  +  I S + DG I+ W           L  +  S V   +P       + S+D
Sbjct: 205 AFSPDGGL-LIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVSSFSPDGSLLA-SGSSD 262

Query: 565 GT-------------RTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTS 611
           GT             RT  G    S+  V F        +   D +++ WD+++ +LL+S
Sbjct: 263 GTIRLWDLRSSSSLLRTLSG-HSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSS 321

Query: 612 IDADGGLPASPRIRFNKDGCLLAVS-TNDNGIKILATSDGIRLLRTFENLAYDASRTSEN 670
           +   G       + F+ DG LL    ++D  I++     G  L        +    +   
Sbjct: 322 LTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLE---GHSNVLSVSF 378

Query: 671 SKNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNS 730
           S +G V S       +        ++W L+  S                  ++ L F+  
Sbjct: 379 SPDGRVVSSGSTDGTV--------RLWDLSTGSLLRNLDGHTSR-------VTSLDFSPD 423

Query: 731 GNAILALASNAIHLLWKWQRTERNSS 756
           G ++ + +S+    LW  + + ++ S
Sbjct: 424 GKSLASGSSDNTIRLWDLKTSLKSVS 449

Length = 466

>gnl|CDD|128914 smart00668, CTLH, C-terminal to LisH motif

 Score = 71.1 bits (175), Expect = 2e-15
 Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 1/59 (1%)

Query: 34 FFFNMKYFEDEVHNGNWDDVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDKHDRAK 92
           F   K   + +  G+WD+  ++LS        R S K+ FE+RKQK+LE + +    +
Sbjct: 1  EFDERKRIRELILKGDWDEALEWLSSLKPPLLERNS-KLEFELRKQKFLELVRQGKLEE 58

Alpha-helical motif of unknown function. Length = 58

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 73.9 bits (182), Expect = 3e-14
 Identities = 42/219 (19%), Positives = 84/219 (38%), Gaps = 29/219 (13%)

Query: 789 VPCFALSKNDSYVMSASG-GKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGM 847
           V C A S +   + + SG G I ++++ T + + T          +A    D   +A G 
Sbjct: 12  VTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASA-DGTYLASGS 70

Query: 848 DDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKN 907
            D +I+++++   E    L GH+  ++ +AFS    +L SS  D  + VW          
Sbjct: 71  SDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWD--------- 121

Query: 908 RFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPRESS---- 963
                      T +  T ++ H D ++ +        +  +++   +K W  R       
Sbjct: 122 ---------VETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVAT 172

Query: 964 -----APITHATFSCDSQLVYACFLDATVCVFSAANLKL 997
                  +    FS D + + +   D T+ ++  +  K 
Sbjct: 173 LTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKC 211

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 70.4 bits (173), Expect = 6e-13
 Identities = 37/170 (21%), Positives = 69/170 (40%), Gaps = 14/170 (8%)

Query: 831 TFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGA 890
           T +AF P D  ++A G  D +I+++++   E+   LKGH+  +  +A S     L S  +
Sbjct: 13  TCVAFSP-DGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSS 71

Query: 891 DSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV--HETQLAIFET 948
           D  + +W       +    ++  TG T    S   V F  D    L     +  + +++ 
Sbjct: 72  DKTIRLWDL-----ETGECVRTLTGHTSYVSS---VAFSPDG-RILSSSSRDKTIKVWDV 122

Query: 949 TKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLR 998
              +C+     R  +  +    FS D   V +   D T+ ++     K  
Sbjct: 123 ETGKCLT--TLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCV 170

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 69.7 bits (171), Expect = 9e-13
 Identities = 33/114 (28%), Positives = 56/114 (49%), Gaps = 2/114 (1%)

Query: 786 EEAVPCFALSKNDSYVMSASG-GKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIA 844
              V   A S +   ++S+S  G I L+++ T K + T          +AF P D  ++A
Sbjct: 177 TGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSP-DGYLLA 235

Query: 845 IGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS 898
            G +D +I+++++R  E    L GH+  +T LA+S     L S  AD  + +W 
Sbjct: 236 SGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 67.7 bits (166), Expect = 5e-12
 Identities = 48/238 (20%), Positives = 95/238 (39%), Gaps = 16/238 (6%)

Query: 766  QLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASG-GKISLFNMMTFKTMATFM 824
            ++W   +G ++    T       V   A S + +Y+ S S    I L+++ T + + T  
Sbjct: 34   KVWDLETGELLR---TLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVRTLT 90

Query: 825  PPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNV 884
                  + +AF P D  I++    D +I++++V   +  + L+GH+  +  +AFS     
Sbjct: 91   GHTSYVSSVAFSP-DGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTF 149

Query: 885  LVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQL 943
            + SS  D  + +W     +          TG T    S   V F  D    L    +  +
Sbjct: 150  VASSSQDGTIKLWDLRTGKCVATL-----TGHTGEVNS---VAFSPDGEKLLSSSSDGTI 201

Query: 944  AIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRI 1001
             +++ +  +C+     R     +    FS D  L+ +   D T+ V+     +    +
Sbjct: 202  KLWDLSTGKCLGT--LRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTL 257

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 68.2 bits (165), Expect = 1e-11
 Identities = 69/303 (22%), Positives = 106/303 (34%), Gaps = 54/303 (17%)

Query: 348 PKTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLW--EVGSRERLVLR-------- 397
            K ++          S+ F P    L+  G++ G I LW    G   R  L         
Sbjct: 188 GKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVS 247

Query: 398 ----------------NFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSR 441
                             ++WDL + S  L+   +     SV  V +SPDG L     S 
Sbjct: 248 SFSPDGSLLASGSSDGTIRLWDLRSSSSLLR--TLSGHSSSVLSVAFSPDGKLLASGSSD 305

Query: 442 HIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAK 501
             V+++    G  +   L +  H G V+ ++FS P+  L V    DD TI++WD   G  
Sbjct: 306 GTVRLWDLETGKLLSS-LTLKGHEGPVSSLSFS-PDGSLLVSGGSDDGTIRLWDLRTGKP 363

Query: 502 QYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAY 561
               EGH   V SV       +    ST  DG ++ W         + +      T++ +
Sbjct: 364 LKTLEGHS-NVLSVSFSPDGRVVSSGST--DGTVRLWDLSTGSLLRNLDGHTSRVTSLDF 420

Query: 562 SADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPAS 621
           S DG                         +   D +I+ WD+ +     S   DG + AS
Sbjct: 421 SPDG---------------------KSLASGSSDNTIRLWDLKTSLKSVSFSPDGKVLAS 459

Query: 622 PRI 624
              
Sbjct: 460 KSS 462

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 62.8 bits (151), Expect = 6e-10
 Identities = 56/318 (17%), Positives = 111/318 (34%), Gaps = 21/318 (6%)

Query: 767  LWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASG---GKISLFNMMT-FKTMAT 822
            LW   +G  +   +   +          S + + ++ AS    G + L+++ T  K + T
Sbjct: 91   LWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRT 150

Query: 823  FMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHAL 882
                  + T LAF P    + +    D +I+++++R  +  S L GH+  ++ LAFS   
Sbjct: 151  LEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDG 210

Query: 883  N-VLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHET 941
              ++ S  +D  + +W      K     L   +    ++       F  D          
Sbjct: 211  GLLIASGSSDGTIRLWDLSTG-KLLRSTLSGHSDSVVSS-------FSPDGSLLASGSSD 262

Query: 942  QLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRI 1001
                    +            S+ +    FS D +L+ +   D TV ++     KL   +
Sbjct: 263  GTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSL 322

Query: 1002 NPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESEGKWGVPPPVDNG 1061
                +    VSS       ++  P      + G  DG + +++    +    +    +  
Sbjct: 323  TLKGH-EGPVSS-------LSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHSNVL 374

Query: 1062 STSSMPATPPVGGSGSDQ 1079
            S S  P    V    +D 
Sbjct: 375  SVSFSPDGRVVSSGSTDG 392

Length = 466

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 60.0 bits (146), Expect = 1e-09
 Identities = 70/356 (19%), Positives = 127/356 (35%), Gaps = 75/356 (21%)

Query: 505 FEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSAD 564
            +GH   V  V      + + + + + DG IK W         D E           + +
Sbjct: 5   LKGHTGGVTCVAFS--PDGKLLATGSGDGTIKVW---------DLE-----------TGE 42

Query: 565 GTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRI 624
             RT +G     +  V          +   D +I+ WD+++ + + ++       +S  +
Sbjct: 43  LLRTLKG-HTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSS--V 99

Query: 625 RFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKNGDVRSLA--DV 682
            F+ DG +L+ S+ D  IK+     G + L T                   V S+A    
Sbjct: 100 AFSPDGRILSSSSRDKTIKVWDVETG-KCLTTL------------RGHTDWVNSVAFSPD 146

Query: 683 KPRITEESNDKS-KVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNA 741
              +   S D + K+W L          +L         +++ + F+  G  +L+     
Sbjct: 147 GTFVASSSQDGTIKLWDLRTGKC---VATLTGHTG----EVNSVAFSPDGEKLLS----- 194

Query: 742 IHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYV 801
                        SS   T      LW   +G  +    T    E  V   A S +   +
Sbjct: 195 -------------SSSDGTIK----LWDLSTGKCL---GTLRGHENGVNSVAFSPDGYLL 234

Query: 802 MSASG-GKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYN 856
            S S  G I ++++ T + + T      + T LA+ P D   +A G  D +I+I++
Sbjct: 235 ASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSP-DGKRLASGSADGTIRIWD 289

Length = 289

>gnl|CDD|128913 smart00667, LisH, Lissencephaly type-1-like homology motif

 Score = 44.0 bits (105), Expect = 5e-06
 Identities = 12/31 (38%), Positives = 18/31 (58%)

Query: 4  LSRELVFLILQFLDEEKFKETVHKLEQESGF 34
             EL  LIL++L    ++ET   L++ESG 
Sbjct: 2  SRSELNRLILEYLLRNGYEETAETLQKESGL 32

Alpha-helical motif present in Lis1, treacle, Nopp140, some katanin p60 subunits, muskelin, tonneau, LEUNIG and numerous WD40 repeat-containing proteins. It is suggested that LisH motifs contribute to the regulation of microtubule dynamics, either by mediating dimerisation, or else by binding cytoplasmic dynein heavy chain or microtubules directly. Length = 34

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 48.9 bits (117), Expect = 6e-06
 Identities = 30/134 (22%), Positives = 52/134 (38%), Gaps = 11/134 (8%)

Query: 866 LKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTR 925
           LKGH+  +T +AFS    +L +   D  + VW  +  E    R L+  TG          
Sbjct: 5   LKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELL--RTLKGHTG------PVRD 56

Query: 926 VQFHQDQIHFLVVHE-TQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLD 984
           V    D  +         + +++    ECV+      S   ++   FS D +++ +   D
Sbjct: 57  VAASADGTYLASGSSDKTIRLWDLETGECVRTLTGHTS--YVSSVAFSPDGRILSSSSRD 114

Query: 985 ATVCVFSAANLKLR 998
            T+ V+     K  
Sbjct: 115 KTIKVWDVETGKCL 128

Length = 289

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 43.5 bits (103), Expect = 6e-06
 Identities = 13/36 (36%), Positives = 18/36 (50%), Gaps = 2/36 (5%)

Query: 460 EIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWD 495
            +  H G V  +AFS     L   +  DD T++VWD
Sbjct: 6   TLKGHTGPVTSVAFSPDGNLL--ASGSDDGTVRVWD 39

Length = 39

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 43.1 bits (102), Expect = 1e-05
 Identities = 13/38 (34%), Positives = 19/38 (50%)

Query: 861 EVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS 898
           E+   LKGH+  +T +AFS     L S   D  + +W 
Sbjct: 3   ELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 42.3 bits (100), Expect = 2e-05
 Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 2/36 (5%)

Query: 460 EIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWD 495
            +  H G V  +AFS   K L   +  DD TIK+WD
Sbjct: 7   TLKGHTGPVTSVAFSPDGKYL--ASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 41.6 bits (98), Expect = 4e-05
 Identities = 14/38 (36%), Positives = 21/38 (55%)

Query: 861 EVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS 898
           ++   LKGH+  +T +AFS   N+L S   D  + VW 
Sbjct: 2   KLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39

Length = 39

>gnl|CDD|220824 pfam10607, CLTH, CTLH/CRA C-terminal to LisH motif domain

 Score = 41.8 bits (99), Expect = 3e-04
 Identities = 25/105 (23%), Positives = 49/105 (46%), Gaps = 11/105 (10%)

Query: 35  FFNMKYFEDEVHNGNWDDVEKYL----SGFTKVDDNRYSMKIFFEIRKQKYLEALDKHDR 90
           F       + + NG+ ++  ++         K++ N     + FE+R Q+++E + +   
Sbjct: 2   FKERNKIRESLLNGDLEEALEWCNENKPELLKINSN-----LEFELRLQQFIELIREGKI 56

Query: 91  AKAVEILVKDLKVFSTFNEELFKEITQLLTLENFRENEQLSKYGD 135
            +A+E   ++L  F  FNE+  KEI +L+ L  F +    S Y  
Sbjct: 57  LEALEYARENLAPF--FNEQHLKEIQKLMGLLAFPDPTDSSPYKS 99

RanBPM is a scaffolding protein and is important in regulating cellular function in both the immune system and the nervous system. This domain is at the C-terminus of the proteins and is the binding domain for the CRA motif (for CT11-RanBPM), which is comprised of approximately 100 amino acids at the C terminal of RanBPM. It was found to be important for the interaction of RanBPM with fragile X mental retardation protein (FMRP), but its functional significance has yet to be determined. This region contains CTLH and CRA domains annotated by SMART; however, these may be a single domain, and it is refereed to as a C-terminal to LisH motif. Length = 144

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 42.0 bits (97), Expect = 0.001
 Identities = 31/165 (18%), Positives = 55/165 (33%), Gaps = 25/165 (15%)

Query: 341 FSTPEDLPKTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFK 400
           +        +            S+ F P    L+  G++ G I LW++ + + L      
Sbjct: 311 WDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEG- 369

Query: 401 VWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLE 460
                                +V  V +SPDG +     +   V+++    G  +R    
Sbjct: 370 -------------------HSNVLSVSFSPDGRVVSSGSTDGTVRLWDLSTGSLLR---N 407

Query: 461 IDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIF 505
           +D H   V  + FS       + +   D TI++WD     K   F
Sbjct: 408 LDGHTSRVTSLDFS--PDGKSLASGSSDNTIRLWDLKTSLKSVSF 450

Length = 466

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	1082
KOG0275	508	consensus Conserved WD40 repeat-containing protein	100.0
KOG0293	519	consensus WD40 repeat-containing protein [Function	100.0
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0318	603	consensus WD40 repeat stress protein/actin interac	100.0
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	100.0
KOG0318	603	consensus WD40 repeat stress protein/actin interac	100.0
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	100.0
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	100.0
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	100.0
KOG1539	910	consensus WD repeat protein [General function pred	100.0
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	100.0
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	100.0
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	100.0
KOG0286	343	consensus G-protein beta subunit [General function	100.0
KOG0263	707	consensus Transcription initiation factor TFIID, s	100.0
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	100.0
KOG1063	764	consensus RNA polymerase II elongator complex, sub	100.0
KOG1539	910	consensus WD repeat protein [General function pred	100.0
KOG0279	315	consensus G protein beta subunit-like protein [Sig	100.0
KOG0286	343	consensus G-protein beta subunit [General function	100.0
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	100.0
KOG1063	764	consensus RNA polymerase II elongator complex, sub	100.0
KOG2106	626	consensus Uncharacterized conserved protein, conta	100.0
KOG0296	399	consensus Angio-associated migratory cell protein	100.0
KOG0279	315	consensus G protein beta subunit-like protein [Sig	100.0
KOG0295	406	consensus WD40 repeat-containing protein [Function	100.0
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	100.0
KOG0315	311	consensus G-protein beta subunit-like protein (con	100.0
KOG0315	311	consensus G-protein beta subunit-like protein (con	100.0
KOG0296	399	consensus Angio-associated migratory cell protein	100.0
KOG0295	406	consensus WD40 repeat-containing protein [Function	100.0
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	100.0
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	100.0
KOG0293	519	consensus WD40 repeat-containing protein [Function	100.0
KOG0645	312	consensus WD40 repeat protein [General function pr	100.0
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	100.0
KOG0263	707	consensus Transcription initiation factor TFIID, s	100.0
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	100.0
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	100.0
KOG2048	691	consensus WD40 repeat protein [General function pr	100.0
KOG2048	691	consensus WD40 repeat protein [General function pr	100.0
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	100.0
KOG2106	626	consensus Uncharacterized conserved protein, conta	100.0
KOG0284	464	consensus Polyadenylation factor I complex, subuni	100.0
KOG0266	456	consensus WD40 repeat-containing protein [General	100.0
KOG0645	312	consensus WD40 repeat protein [General function pr	100.0
KOG0316	307	consensus Conserved WD40 repeat-containing protein	100.0
KOG0282	503	consensus mRNA splicing factor [Function unknown]	99.98
KOG0266	456	consensus WD40 repeat-containing protein [General	99.98
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	99.98
KOG0316	307	consensus Conserved WD40 repeat-containing protein	99.98
KOG0284	464	consensus Polyadenylation factor I complex, subuni	99.98
KOG0278	334	consensus Serine/threonine kinase receptor-associa	99.97
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.97
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	99.97
KOG0282	503	consensus mRNA splicing factor [Function unknown]	99.97
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	99.97
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	99.97
KOG0643	327	consensus Translation initiation factor 3, subunit	99.97
PLN00181	793	protein SPA1-RELATED; Provisional	99.97
PLN00181	793	protein SPA1-RELATED; Provisional	99.97
KOG0275	508	consensus Conserved WD40 repeat-containing protein	99.97
KOG0640	430	consensus mRNA cleavage stimulating factor complex	99.97
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	99.96
KOG0641	350	consensus WD40 repeat protein [General function pr	99.96
KOG0643	327	consensus Translation initiation factor 3, subunit	99.96
KOG0278	334	consensus Serine/threonine kinase receptor-associa	99.96
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	99.96
KOG0283	712	consensus WD40 repeat-containing protein [Function	99.96
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	99.96
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.96
KOG0288	459	consensus WD40 repeat protein TipD [General functi	99.95
KOG0310	487	consensus Conserved WD40 repeat-containing protein	99.95
KOG1407	313	consensus WD40 repeat protein [Function unknown]	99.95
KOG0310	487	consensus Conserved WD40 repeat-containing protein	99.95
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.95
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.95
KOG1407	313	consensus WD40 repeat protein [Function unknown]	99.95
KOG0283	712	consensus WD40 repeat-containing protein [Function	99.95
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.95
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.95
KOG0640	430	consensus mRNA cleavage stimulating factor complex	99.95
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	99.95
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	99.95
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	99.95
KOG0288	459	consensus WD40 repeat protein TipD [General functi	99.95
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.95
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.95
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	99.95
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.95
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.94
KOG2096	420	consensus WD40 repeat protein [General function pr	99.94
PTZ00421	493	coronin; Provisional	99.94
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	99.94
PTZ00421	493	coronin; Provisional	99.94
KOG2096	420	consensus WD40 repeat protein [General function pr	99.94
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	99.94
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.94
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	99.93
PTZ00420	568	coronin; Provisional	99.93
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.93
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.93
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.93
KOG0289	506	consensus mRNA splicing factor [General function p	99.93
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.93
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	99.93
KOG1963	792	consensus WD40 repeat protein [General function pr	99.93
PTZ00420	568	coronin; Provisional	99.93
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.93
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.92
KOG0641	350	consensus WD40 repeat protein [General function pr	99.92
KOG0289	506	consensus mRNA splicing factor [General function p	99.92
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.92
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.92
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	99.92
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.91
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.91
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.91
KOG1274	933	consensus WD40 repeat protein [General function pr	99.91
KOG1963	792	consensus WD40 repeat protein [General function pr	99.91
KOG1273	405	consensus WD40 repeat protein [General function pr	99.91
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.9
KOG2055	514	consensus WD40 repeat protein [General function pr	99.9
KOG0639	705	consensus Transducin-like enhancer of split protei	99.9
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.9
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.9
KOG0646	476	consensus WD40 repeat protein [General function pr	99.9
KOG1274	933	consensus WD40 repeat protein [General function pr	99.9
KOG0639	705	consensus Transducin-like enhancer of split protei	99.9
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.9
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.9
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.89
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.89
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.89
KOG1273	405	consensus WD40 repeat protein [General function pr	99.89
KOG0646	476	consensus WD40 repeat protein [General function pr	99.89
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.88
KOG2055	514	consensus WD40 repeat protein [General function pr	99.88
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.88
KOG4328	498	consensus WD40 protein [Function unknown]	99.88
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.87
KOG0267	825	consensus Microtubule severing protein katanin p80	99.86
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.86
KOG0267	825	consensus Microtubule severing protein katanin p80	99.86
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.85
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.85
COG2319	466	FOG: WD40 repeat [General function prediction only	99.85
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.85
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.84
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.84
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.84
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.84
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.83
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.83
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.83
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.83
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.82
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.82
KOG4328	498	consensus WD40 protein [Function unknown]	99.82
COG2319	466	FOG: WD40 repeat [General function prediction only	99.82
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.81
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.81
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	99.8
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.8
KOG1310	758	consensus WD40 repeat protein [General function pr	99.8
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.79
KOG1912	1062	consensus WD40 repeat protein [General function pr	99.79
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.78
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.77
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.77
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.76
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.76
KOG4227	609	consensus WD40 repeat protein [General function pr	99.76
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.76
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.75
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	99.74
KOG0649	325	consensus WD40 repeat protein [General function pr	99.74
KOG1912	1062	consensus WD40 repeat protein [General function pr	99.74
KOG1188	376	consensus WD40 repeat protein [General function pr	99.74
PRK11028	330	6-phosphogluconolactonase; Provisional	99.73
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.73
KOG1310	758	consensus WD40 repeat protein [General function pr	99.73
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.73
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.72
KOG4227	609	consensus WD40 repeat protein [General function pr	99.72
PRK11028	330	6-phosphogluconolactonase; Provisional	99.72
KOG1188	376	consensus WD40 repeat protein [General function pr	99.72
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.72
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.71
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.71
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.7
KOG1334	559	consensus WD40 repeat protein [General function pr	99.7
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.7
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.7
KOG1334	559	consensus WD40 repeat protein [General function pr	99.69
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.67
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.67
KOG0649	325	consensus WD40 repeat protein [General function pr	99.67
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.67
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.66
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.65
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	99.65
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.64
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	99.64
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.63
PRK01742	429	tolB translocation protein TolB; Provisional	99.63
COG4946	668	Uncharacterized protein related to the periplasmic	99.63
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.62
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.62
PRK01742	429	tolB translocation protein TolB; Provisional	99.61
KOG2139	445	consensus WD40 repeat protein [General function pr	99.61
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.61
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.6
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.6
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.6
KOG2139	445	consensus WD40 repeat protein [General function pr	99.57
KOG2659	228	consensus LisH motif-containing protein [Cytoskele	99.55
KOG2321	703	consensus WD40 repeat protein [General function pr	99.53
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.53
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.52
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.51
KOG2321	703	consensus WD40 repeat protein [General function pr	99.5
PRK03629	429	tolB translocation protein TolB; Provisional	99.5
KOG2041	1189	consensus WD40 repeat protein [General function pr	99.49
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	99.48
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	99.47
PRK02889	427	tolB translocation protein TolB; Provisional	99.46
KOG2315	566	consensus Predicted translation initiation factor	99.46
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.46
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.45
PRK03629	429	tolB translocation protein TolB; Provisional	99.45
PRK04922	433	tolB translocation protein TolB; Provisional	99.45
KOG2315	566	consensus Predicted translation initiation factor	99.44
PRK05137	435	tolB translocation protein TolB; Provisional	99.44
PRK05137	435	tolB translocation protein TolB; Provisional	99.43
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.43
KOG2041	1189	consensus WD40 repeat protein [General function pr	99.43
PRK02889	427	tolB translocation protein TolB; Provisional	99.43
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	99.43
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.42
PRK04922	433	tolB translocation protein TolB; Provisional	99.42
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	99.41
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	99.41
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	99.41
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.4
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.39
PRK01029	428	tolB translocation protein TolB; Provisional	99.39
KOG1409	404	consensus Uncharacterized conserved protein, conta	99.37
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.36
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	99.36
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.35
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	99.35
COG4946	668	Uncharacterized protein related to the periplasmic	99.33
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.31
KOG2314	698	consensus Translation initiation factor 3, subunit	99.31
PRK04792	448	tolB translocation protein TolB; Provisional	99.3
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	99.3
PRK00178	430	tolB translocation protein TolB; Provisional	99.29
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	99.26
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.24
KOG2314	698	consensus Translation initiation factor 3, subunit	99.24
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	99.23
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.22
KOG4547	541	consensus WD40 repeat-containing protein [General	99.2
PRK04792	448	tolB translocation protein TolB; Provisional	99.18
PRK00178	430	tolB translocation protein TolB; Provisional	99.17
PRK01029	428	tolB translocation protein TolB; Provisional	99.17
KOG1409	404	consensus Uncharacterized conserved protein, conta	99.11
KOG4547	541	consensus WD40 repeat-containing protein [General	99.11
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	99.08
KOG0280	339	consensus Uncharacterized conserved protein [Amino	99.07
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.02
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	99.02
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	99.0
PRK04043	419	tolB translocation protein TolB; Provisional	99.0
KOG0280	339	consensus Uncharacterized conserved protein [Amino	99.0
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	98.98
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	98.97
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	98.96
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	98.93
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	98.87
PRK04043	419	tolB translocation protein TolB; Provisional	98.85
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	98.83
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	98.81
KOG4532	344	consensus WD40-like repeat containing protein [Gen	98.78
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	98.77
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	98.76
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	98.76
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	98.76
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	98.74
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	98.71
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	98.7
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	98.7
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	98.68
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	98.67
KOG4532	344	consensus WD40-like repeat containing protein [Gen	98.66
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	98.66
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	98.61
KOG1897	1096	consensus Damage-specific DNA binding complex, sub	98.6
KOG4714	319	consensus Nucleoporin [Nuclear structure]	98.57
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	98.57
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	98.57
KOG2695	425	consensus WD40 repeat protein [General function pr	98.55
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	98.54
PF10607	145	CLTH: CTLH/CRA C-terminal to LisH motif domain; In	98.54
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	98.53
PRK02888	635	nitrous-oxide reductase; Validated	98.53
KOG1897	1096	consensus Damage-specific DNA binding complex, sub	98.52
KOG4714	319	consensus Nucleoporin [Nuclear structure]	98.51
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	98.48
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.48
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	98.47
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	98.47
KOG0396	389	consensus Uncharacterized conserved protein [Funct	98.47
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	98.43
KOG2695	425	consensus WD40 repeat protein [General function pr	98.4
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	98.39
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	98.38
PRK02888	635	nitrous-oxide reductase; Validated	98.36
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	98.31
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	98.31
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	98.28
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.28
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	98.26
KOG3621	726	consensus WD40 repeat-containing protein [General	98.17
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	98.16
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	98.15
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	98.12
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	98.12
PF08513	27	LisH: LisH; InterPro: IPR013720 The LisH motif is	98.11
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	98.09
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	98.07
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	98.05
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.03
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	98.01
smart00668	58	CTLH C-terminal to LisH motif. Alpha-helical motif	97.99
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	97.98
KOG3621	726	consensus WD40 repeat-containing protein [General	97.97
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	97.96
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	97.96
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	97.95
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	97.92
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	97.91
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	97.9
smart00667	34	LisH Lissencephaly type-1-like homology motif. Alp	97.89
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	97.87
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	97.87
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	97.86
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	97.85
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	97.84
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	97.76
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	97.76
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	97.74
COG3391	381	Uncharacterized conserved protein [Function unknow	97.72
KOG1008	783	consensus Uncharacterized conserved protein, conta	97.62
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	97.6
KOG2817	394	consensus Predicted E3 ubiquitin ligase [Posttrans	97.58
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	97.54
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	97.5
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	97.47
PRK13616	591	lipoprotein LpqB; Provisional	97.45
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	97.41
PRK13616	591	lipoprotein LpqB; Provisional	97.38
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	97.37
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	97.36
COG3391	381	Uncharacterized conserved protein [Function unknow	97.32
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	97.29
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	97.28
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	97.27
KOG1008	783	consensus Uncharacterized conserved protein, conta	97.23
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	97.21
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	97.1
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	97.07
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	97.04
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	97.04
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	97.02
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	96.99
KOG2395	644	consensus Protein involved in vacuole import and d	96.96
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	96.94
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	96.9
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	96.9
PF14727	418	PHTB1_N: PTHB1 N-terminus	96.86
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	96.69
KOG2444	238	consensus WD40 repeat protein [General function pr	96.58
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	96.56
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	96.55
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	96.48
PHA02713	557	hypothetical protein; Provisional	96.48
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	96.47
PRK10115	686	protease 2; Provisional	96.45
KOG2395	644	consensus Protein involved in vacuole import and d	96.45
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	96.42
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	96.4
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	96.28
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	96.27
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	96.24
PRK10115	686	protease 2; Provisional	96.2
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	96.18
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	96.06
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	96.02
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	96.02
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	95.93
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	95.9
KOG1898	1205	consensus Splicing factor 3b, subunit 3 [RNA proce	95.88
PHA02713	557	hypothetical protein; Provisional	95.84
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	95.81
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	95.78
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	95.74
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	95.69
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	95.64
KOG1898	1205	consensus Splicing factor 3b, subunit 3 [RNA proce	95.58
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	95.5
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	95.28
KOG2444	238	consensus WD40 repeat protein [General function pr	95.27
COG3823	262	Glutamine cyclotransferase [Posttranslational modi	95.05
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	94.75
KOG1916	1283	consensus Nuclear protein, contains WD40 repeats [	94.69
KOG3616	1636	consensus Selective LIM binding factor [Transcript	94.68
TIGR03118	336	PEPCTERM_chp_1 conserved hypothetical protein TIGR	94.58
PF14727	418	PHTB1_N: PTHB1 N-terminus	94.55
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	94.5
TIGR03118	336	PEPCTERM_chp_1 conserved hypothetical protein TIGR	94.45
PRK13684	334	Ycf48-like protein; Provisional	94.38
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	94.32
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	94.23
PRK13684	334	Ycf48-like protein; Provisional	94.08
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	94.05
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	93.83
COG4590	733	ABC-type uncharacterized transport system, permeas	93.81
PHA02790	480	Kelch-like protein; Provisional	93.81
PHA03098	534	kelch-like protein; Provisional	93.75
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	93.47
KOG3630	1405	consensus Nuclear pore complex, Nup214/CAN compone	93.2
KOG2247	615	consensus WD40 repeat-containing protein [General	93.14
COG3292	671	Predicted periplasmic ligand-binding sensor domain	92.53
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	92.49
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	92.49
COG4257	353	Vgb Streptogramin lyase [Defense mechanisms]	92.46
PF14761	215	HPS3_N: Hermansky-Pudlak syndrome 3	92.44
PF07676	39	PD40: WD40-like Beta Propeller Repeat; InterPro: I	92.39
PF03022	287	MRJP: Major royal jelly protein; InterPro: IPR0035	92.3
cd08044	133	TAF5_NTD2 TAF5_NTD2 is the second conserved N-term	92.29
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	92.27
PHA03098	534	kelch-like protein; Provisional	92.26
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	92.21
PLN00033	398	photosystem II stability/assembly factor; Provisio	92.13
PF04494	142	TFIID_90kDa: WD40 associated region in TFIID subun	91.66
COG5167	776	VID27 Protein involved in vacuole import and degra	91.46
PLN00033	398	photosystem II stability/assembly factor; Provisio	91.33
PF13449	326	Phytase-like: Esterase-like activity of phytase	91.23
COG4257	353	Vgb Streptogramin lyase [Defense mechanisms]	90.9
PF11725	1774	AvrE: Pathogenicity factor; InterPro: IPR021085 Th	90.82
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	90.67
KOG1896	1366	consensus mRNA cleavage and polyadenylation factor	90.61
KOG3630	1405	consensus Nuclear pore complex, Nup214/CAN compone	90.04
PF13449	326	Phytase-like: Esterase-like activity of phytase	90.03
KOG1916	1283	consensus Nuclear protein, contains WD40 repeats [	89.92
PHA02790	480	Kelch-like protein; Provisional	89.69
COG4590	733	ABC-type uncharacterized transport system, permeas	89.66
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	89.36
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	89.19
PF14761	215	HPS3_N: Hermansky-Pudlak syndrome 3	89.06
PF02333	381	Phytase: Phytase; InterPro: IPR003431 Phytase (3.1	88.54
KOG2377	657	consensus Uncharacterized conserved protein [Funct	88.36
KOG3616	1636	consensus Selective LIM binding factor [Transcript	88.16
PF10214	765	Rrn6: RNA polymerase I-specific transcription-init	88.15
PF05935	477	Arylsulfotrans: Arylsulfotransferase (ASST); Inter	88.11
KOG1900	1311	consensus Nuclear pore complex, Nup155 component (	88.08
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	87.85
PF05935	477	Arylsulfotrans: Arylsulfotransferase (ASST); Inter	87.79
KOG1983	993	consensus Tomosyn and related SNARE-interacting pr	86.79
COG3823	262	Glutamine cyclotransferase [Posttranslational modi	86.75
KOG2377	657	consensus Uncharacterized conserved protein [Funct	85.09
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	84.96
COG1520	370	FOG: WD40-like repeat [Function unknown]	84.76
KOG4659	1899	consensus Uncharacterized conserved protein (Rhs f	84.73
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	83.8
COG5167	776	VID27 Protein involved in vacuole import and degra	83.57
PF12657	173	TFIIIC_delta: Transcription factor IIIC subunit de	83.48
PF10433	504	MMS1_N: Mono-functional DNA-alkylating methyl meth	83.2
TIGR03606	454	non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH	83.07
KOG1900	1311	consensus Nuclear pore complex, Nup155 component (	82.89
KOG1983	993	consensus Tomosyn and related SNARE-interacting pr	82.87
PF02333	381	Phytase: Phytase; InterPro: IPR003431 Phytase (3.1	82.79
TIGR03606	454	non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH	82.73
PRK13614	573	lipoprotein LpqB; Provisional	81.61
COG5290	1243	IkappaB kinase complex, IKAP component [Transcript	81.45
PRK13615	557	lipoprotein LpqB; Provisional	81.14
PF12657	173	TFIIIC_delta: Transcription factor IIIC subunit de	80.81
smart00036	302	CNH Domain found in NIK1-like kinases, mouse citro	80.8
PF12768	281	Rax2: Cortical protein marker for cell polarity	80.61
PF14781	136	BBS2_N: Ciliary BBSome complex subunit 2, N-termin	80.42
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	80.3

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=100.00  E-value=1e-65  Score=490.77  Aligned_cols=491  Identities=20%  Similarity=0.316  Sum_probs=419.8

Q ss_pred             hHHHHHHHHHHHhhcChHHHHHHHHHhcCCCcc----HHHHHHHhhccCHHHHHHHhccCccccCcccchhhHHHHHHHH
Q 001415            5 SRELVFLILQFLDEEKFKETVHKLEQESGFFFN----MKYFEDEVHNGNWDDVEKYLSGFTKVDDNRYSMKIFFEIRKQK   80 (1082)
Q Consensus         5 ~~~~~~li~q~L~~~g~~~s~~~L~~Esg~~~~----~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~   80 (1082)
                      ..+|||||.|||+|+.+.+++++||+|+++++|    ++.|.+.|.+|+||.++..+++|++++      +-+..||+|.
T Consensus         7 ssdVIrli~QflKE~~L~rtl~tLQeEt~VSLNTVDSvd~Fv~dI~sG~WD~VL~~vqsLKLP~------kkL~dLYEqi   80 (508)
T KOG0275|consen    7 SSDVIRLIEQFLKENSLHRTLQTLQEETNVSLNTVDSVDGFVNDINSGHWDTVLKTVQSLKLPD------KKLIDLYEQI   80 (508)
T ss_pred             cchHHHHHHHHHhhhhHHHHHHHHHHhhccceeechhHHHHHHhcccCchHHHHHHHHhccCch------hHHHHHHHHH
Confidence            468999999999999999999999999999998    889999999999999999999995543      6889999999


Q ss_pred             HHHHHhcCCHHHHHHHHHhc--cccccccCHHHHHHHHHHhccccccchhhhccCCCchHHHHHHHHHHHhhcccCCCcc
Q 001415           81 YLEALDKHDRAKAVEILVKD--LKVFSTFNEELFKEITQLLTLENFRENEQLSKYGDTKSARSIMLVELKKLIEANPLFR  158 (1082)
Q Consensus        81 ~lell~~~~~~~a~~~l~~~--l~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~~~~r~~l~~~l~~~~~~~~~~~  158 (1082)
                      .|||+|.++...|..+||+.  +.-|++.+|++|-+|+.||..+.++..+.|.+ .+.+.+|..+.+.|...+..     
T Consensus        81 vlEliELREL~tAR~~lRQTdpM~~lKQ~~peRy~~lE~ll~R~YFDp~EaY~d-ssKEkrRa~IAQ~ls~EV~V-----  154 (508)
T KOG0275|consen   81 VLELIELRELGTARSLLRQTDPMIMLKQIQPERYIRLENLLNRSYFDPREAYGD-SSKEKRRAVIAQALSGEVHV-----  154 (508)
T ss_pred             HHHHHHHHhhhHHHHHHhccCceehhhccChHHHHHHHHHhcccccChhhhcCc-chHHHHHHHHHHHhcCceEE-----
Confidence            99999999999999999975  66678889999999999999999999999876 35667778888888877765     


Q ss_pred             ccccCCCCcchHHHHHHHHHHHHHHhhCCCCCCCCCCcccccccccCCCCCCCCCCCCCCCcccCCCCCCCCCCCCCCCC
Q 001415          159 DKLQFPNLKNSRLRTLINQSLNWQHQLCKNPRPNPDIKTLFVDHTCGQPNGARAPSPANNPLLGSLPKAGVFPPLGAHGP  238 (1082)
Q Consensus       159 ~~~~~~~~p~~rL~~ll~~~~~~q~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (1082)
                             +||+||+.||+||++||+.                                          .|-+||+++.++
T Consensus       155 -------VppSRLlaLlGQaLKWQqH------------------------------------------QGLLPPGt~iDL  185 (508)
T KOG0275|consen  155 -------VPPSRLLALLGQALKWQQH------------------------------------------QGLLPPGTTIDL  185 (508)
T ss_pred             -------cChHHHHHHHHHHhhhHhh------------------------------------------cCCCCCCceeee
Confidence                   9999999999999999988                                          466779999999


Q ss_pred             CCCCCCCCCCCccccccCCCCcccCCcccCccCCCCCCcccccccCCCCCCCCCCCCCCCCCccccccccCCCCcccccc
Q 001415          239 FQPTPAPVPTPLAGWMSNPPTVTHPAVSGGAIGLGSPSIPAAALKHPRTPPTNPSVDYPSGDSDHLSKRTRPIGISDEIN  318 (1082)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~v~  318 (1082)
                      |++..+         +...+++++|+++...|+|+.++++                                        
T Consensus       186 FRGkAA---------~K~~~Ee~~Pt~l~r~IKFg~KSh~----------------------------------------  216 (508)
T KOG0275|consen  186 FRGKAA---------MKDQEEERYPTQLARSIKFGQKSHV----------------------------------------  216 (508)
T ss_pred             ccchhh---------hhhhHhhhchHHhhhheecccccch----------------------------------------
Confidence            999874         3667889999999999998888775                                        


Q ss_pred             ccccccccccccCccccCCCccCCCCCCCCcceeeecCCCCCceEEEEecCCCeEEEEEcCCCcEEEEEccccceeeeec
Q 001415          319 LPVNVLPVSFTGHSHSHSHSQAFSTPEDLPKTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRN  398 (1082)
Q Consensus       319 ~~~~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~llasgs~dg~i~iwd~~~~~~~~~~~  398 (1082)
                                                                 .|..|||||+| |++|+.||.|.+||..+|+......
T Consensus       217 -------------------------------------------EcA~FSPDgqy-LvsgSvDGFiEVWny~~GKlrKDLk  252 (508)
T KOG0275|consen  217 -------------------------------------------ECARFSPDGQY-LVSGSVDGFIEVWNYTTGKLRKDLK  252 (508)
T ss_pred             -------------------------------------------hheeeCCCCce-Eeeccccceeeeehhccchhhhhhh
Confidence                                                       46679999995 9999999999999999998876433


Q ss_pred             eeeeccCCCCcccccccccCCCCceeEEEEecCCCeEEEEeCCCeEEEEEccCCceeeEEEEee-ccccCeeEEEecCCC
Q 001415          399 FKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEID-AHVGGVNDIAFSHPN  477 (1082)
Q Consensus       399 ~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d~~v~iwd~~~~~~~~~~~~~~-~h~~~V~~l~fs~dg  477 (1082)
                      ++.-|           .+.-+.++|.|+.||.|...||+|+.||.|++|.+.+|.+++   .+. .|+..|+|+.||.|+
T Consensus       253 YQAqd-----------~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG~ClR---rFdrAHtkGvt~l~FSrD~  318 (508)
T KOG0275|consen  253 YQAQD-----------NFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIETGQCLR---RFDRAHTKGVTCLSFSRDN  318 (508)
T ss_pred             hhhhc-----------ceeecccceEEEeecccHHHhhccCcCCcEEEEEEecchHHH---HhhhhhccCeeEEEEccCc
Confidence            33211           366788999999999999999999999999999999999998   454 899999999999999


Q ss_pred             CceEEEEEeCCCcEEEEEccCCceeEEeecCCcCeEEEeeeecCCceEEEEecCCCcEEEEecCCCCceeeecCCCC--c
Q 001415          478 KQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGR--W  555 (1082)
Q Consensus       478 ~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~--~  555 (1082)
                      .  -+++++.|.++++.-+++|++++.++||...|+...|.  ++|+.+++++.||+|++|+..+.++..++...+.  .
T Consensus       319 S--qiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft--~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~  394 (508)
T KOG0275|consen  319 S--QILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFT--DDGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYP  394 (508)
T ss_pred             c--hhhcccccceEEEeccccchhHHHhcCccccccceEEc--CCCCeEEEecCCccEEEecCcchhhhhhccCCCCccc
Confidence            9  58999999999999999999999999999999999875  5568999999999999999999888877665432  3


Q ss_pred             eEEEEEccCCCeeeecccccceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEEecC-CCCCCcCeEEEcCCCCEEE
Q 001415          556 CTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDAD-GGLPASPRIRFNKDGCLLA  634 (1082)
Q Consensus       556 v~~~~~s~d~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~i~~~~~s~dg~~l~  634 (1082)
                      |.++-.-|.                    +...++++...++|+|-++. |+.++.+... ...+...++..+|.|.+++
T Consensus       395 vnsv~~~PK--------------------npeh~iVCNrsntv~imn~q-GQvVrsfsSGkREgGdFi~~~lSpkGewiY  453 (508)
T KOG0275|consen  395 VNSVILLPK--------------------NPEHFIVCNRSNTVYIMNMQ-GQVVRSFSSGKREGGDFINAILSPKGEWIY  453 (508)
T ss_pred             ceeEEEcCC--------------------CCceEEEEcCCCeEEEEecc-ceEEeeeccCCccCCceEEEEecCCCcEEE
Confidence            444433333                    23478999999999999974 6677776532 2233567888999999999


Q ss_pred             EEECCCcEEEEEecCCccceeecccccccccccccccCCCCccccCCCCceeeeccCCceeEEE
Q 001415          635 VSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKNGDVRSLADVKPRITEESNDKSKVWK  698 (1082)
Q Consensus       635 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~iw~  698 (1082)
                      +.+.|+.++.+...+| .+.+.+.-|...+.  .++-       .|..+.+++-+.||.+++|.
T Consensus       454 cigED~vlYCF~~~sG-~LE~tl~VhEkdvI--Gl~H-------HPHqNllAsYsEDgllKLWk  507 (508)
T KOG0275|consen  454 CIGEDGVLYCFSVLSG-KLERTLPVHEKDVI--GLTH-------HPHQNLLASYSEDGLLKLWK  507 (508)
T ss_pred             EEccCcEEEEEEeecC-ceeeeeeccccccc--cccc-------CcccchhhhhcccchhhhcC
Confidence            9999999999999998 67777777766554  2222       67788899999999999995

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=6.1e-64  Score=494.68  Aligned_cols=492  Identities=21%  Similarity=0.297  Sum_probs=403.9

Q ss_pred             hHHHHHHHHHHHhhcChHHHHHHHHHhcCCCcc---HHHHHHHhhccCHHHHHHHhccCccccCcccchhhHHHHHHHHH
Q 001415            5 SRELVFLILQFLDEEKFKETVHKLEQESGFFFN---MKYFEDEVHNGNWDDVEKYLSGFTKVDDNRYSMKIFFEIRKQKY   81 (1082)
Q Consensus         5 ~~~~~~li~q~L~~~g~~~s~~~L~~Esg~~~~---~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~   81 (1082)
                      +.|++|++.|+|+.+||.+|+.+||.|+|+.+.   .+.|.+.++.|+|+.++..+..+...+ +.....+.|++.+|+|
T Consensus        17 k~efi~il~q~l~slgy~~S~~~lE~es~ll~~tat~klf~q~vlqg~w~q~v~~~~~i~~~d-e~~~~ea~fLv~kQ~f   95 (519)
T KOG0293|consen   17 KGEFIRILWQILYSLGYDHSSPLLEWESGLLIPTATTKLFDQQVLQGQWDQQVMSLVRISFED-ERNRKEAMFLVNKQIF   95 (519)
T ss_pred             cchhhHhHHHHHHhcCccccchhhHHhhCcccccchHHHHHHHHHcccHHHHHHHHhhccCcc-hhhhHHHHHHHHHHHH
Confidence            458999999999999999999999999999885   899999999999999999998885444 3334459999999999


Q ss_pred             HHHHhcCCHHHHHHHHHhccccccccCHHHHHHHHHHhcc-ccccchhhhccCCCchHHHHHHHHHHHhhcccCCCcccc
Q 001415           82 LEALDKHDRAKAVEILVKDLKVFSTFNEELFKEITQLLTL-ENFRENEQLSKYGDTKSARSIMLVELKKLIEANPLFRDK  160 (1082)
Q Consensus        82 lell~~~~~~~a~~~l~~~l~~~~~~~~~~~~~l~~ll~~-~~~~~~~~~~~~~~~~~~r~~l~~~l~~~~~~~~~~~~~  160 (1082)
                      ||++..+...+|+..||+.+.++. ++.+++++|..-|.. .++..++... .......|.+|+++|+++|+|++|    
T Consensus        96 LEf~k~~~is~al~~l~~~~~~lr-~~~kk~~el~~sll~sn~~~~ne~~~-~~~~~n~R~~ll~elskyi~p~il----  169 (519)
T KOG0293|consen   96 LEFLKTGSISHALPVLRNPVLYLR-KNKKKFHELASSLLVSNDQFSNEENT-TAQLNNERDKLLDELSKYIPPNIL----  169 (519)
T ss_pred             HHHHhhccHhhhhHhhhcchhhhh-hhHHHHHHHHHHHhccccccccccch-hhhhchhHHHHHHHHHhhCCHhhc----
Confidence            999999999999999999998885 588999988875544 4444444432 123677899999999999999999    


Q ss_pred             ccCCCCcchHHHHHHHHHHHHHHhhCCCCCCCCCCcccccccccCCCCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCCC
Q 001415          161 LQFPNLKNSRLRTLINQSLNWQHQLCKNPRPNPDIKTLFVDHTCGQPNGARAPSPANNPLLGSLPKAGVFPPLGAHGPFQ  240 (1082)
Q Consensus       161 ~~~~~~p~~rL~~ll~~~~~~q~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (1082)
                           +|++||++||+||++||+++|+||| ..+..+||.||+|++               ..+|               
T Consensus       170 -----lP~rRLehLl~qAv~~Q~d~cvyhn-sldsvsll~Dh~c~~---------------~qip---------------  213 (519)
T KOG0293|consen  170 -----LPKRRLEHLLEQAVKYQRDSCVYHN-SLDSVSLLSDHFCGR---------------LQIP---------------  213 (519)
T ss_pred             -----CChHHHHHHHHHHHHHHHhHhHHhc-ccchhhhhhhcccCc---------------ccCC---------------
Confidence                 9999999999999999999999999 677799999999998               2222               


Q ss_pred             CCCCCCCCCccccccCCCCcccCCcccCccCCCCCCcccccccCCCCCCCCCCCCCCCCCccccccccCCCCcccccccc
Q 001415          241 PTPAPVPTPLAGWMSNPPTVTHPAVSGGAIGLGSPSIPAAALKHPRTPPTNPSVDYPSGDSDHLSKRTRPIGISDEINLP  320 (1082)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~v~~~  320 (1082)
                                                                                                      
T Consensus       214 --------------------------------------------------------------------------------  213 (519)
T KOG0293|consen  214 --------------------------------------------------------------------------------  213 (519)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccccccccCccccCCCccCCCCCCCCcceeeecCCCCCceEEEEecCCCeEEEEEcCCCcEEEEEccccceeeeecee
Q 001415          321 VNVLPVSFTGHSHSHSHSQAFSTPEDLPKTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFK  400 (1082)
Q Consensus       321 ~~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~llasgs~dg~i~iwd~~~~~~~~~~~~~  400 (1082)
                               ..                  ....+..|+++||.+.||++|+| ||+++.|.+..||++.....+..    
T Consensus       214 ---------~q------------------t~qil~~htdEVWfl~FS~nGky-LAsaSkD~Taiiw~v~~d~~~kl----  261 (519)
T KOG0293|consen  214 ---------SQ------------------TWQILQDHTDEVWFLQFSHNGKY-LASASKDSTAIIWIVVYDVHFKL----  261 (519)
T ss_pred             ---------ch------------------hhhhHhhCCCcEEEEEEcCCCee-EeeccCCceEEEEEEecCcceee----
Confidence                     00                  00023459999999999999996 99999999999999866544221    


Q ss_pred             eeccCCCCcccccccccCCCCceeEEEEecCCCeEEEEeCCCeEEEEEccCCceeeEEEEeeccccCeeEEEecCCCCce
Q 001415          401 VWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQL  480 (1082)
Q Consensus       401 ~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d~~v~iwd~~~~~~~~~~~~~~~h~~~V~~l~fs~dg~~~  480 (1082)
                                  .+.+.+|..+|..+.||||.+||++|+.+..+.+||+.+|......  -.+|...+.+++|.|||.  
T Consensus       262 ------------~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y--~~~~~~S~~sc~W~pDg~--  325 (519)
T KOG0293|consen  262 ------------KKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLY--PSGLGFSVSSCAWCPDGF--  325 (519)
T ss_pred             ------------eeeeecccCceEEEEECCCCCeEEecCchHheeeccCCcchhhhhc--ccCcCCCcceeEEccCCc--
Confidence                        1148899999999999999999999999999999999999876532  124568999999999999  


Q ss_pred             EEEEEeCCCcEEEEEccCCceeEEeecCC-cCeEEEeeeecCCceEEEEecCCCcEEEEecCCCCceeeecCCCCceEEE
Q 001415          481 CVITCGDDKTIKVWDATNGAKQYIFEGHE-APVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTM  559 (1082)
Q Consensus       481 ~l~s~s~d~~i~vwd~~~~~~~~~~~~h~-~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~  559 (1082)
                      .+++|+.|+++..||+ +|..+...++-. ..|.++++.+  ||.++++.+.|..|++++..+..... +.....++++.
T Consensus       326 ~~V~Gs~dr~i~~wdl-Dgn~~~~W~gvr~~~v~dlait~--Dgk~vl~v~~d~~i~l~~~e~~~dr~-lise~~~its~  401 (519)
T KOG0293|consen  326 RFVTGSPDRTIIMWDL-DGNILGNWEGVRDPKVHDLAITY--DGKYVLLVTVDKKIRLYNREARVDRG-LISEEQPITSF  401 (519)
T ss_pred             eeEecCCCCcEEEecC-CcchhhcccccccceeEEEEEcC--CCcEEEEEecccceeeechhhhhhhc-cccccCceeEE
Confidence            6999999999999995 455566665533 4588888754  55889999999999999987654443 23344566677


Q ss_pred             EEccCCCeeeecccccceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEEecCCCCCCcCeEEEcC-CCCEEEEEEC
Q 001415          560 AYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNK-DGCLLAVSTN  638 (1082)
Q Consensus       560 ~~s~d~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~-dg~~l~~~~~  638 (1082)
                      ++|.|++                     ++++.-.+..+++||++..+.+..+.+|.....+..-+|.- +..++++|+.
T Consensus       402 ~iS~d~k---------------------~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSE  460 (519)
T KOG0293|consen  402 SISKDGK---------------------LALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSE  460 (519)
T ss_pred             EEcCCCc---------------------EEEEEcccCeeEEeecchhhHHHHhhcccccceEEEeccCCCCcceEEecCC
Confidence            7666665                     77777789999999999998998888887665666667765 5689999999


Q ss_pred             CCcEEEEEecCCccceeecccccccccccccccCCCCccccCCCCceeeeccCCceeEEEecc
Q 001415          639 DNGIKILATSDGIRLLRTFENLAYDASRTSENSKNGDVRSLADVKPRITEESNDKSKVWKLTE  701 (1082)
Q Consensus       639 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~iw~~~~  701 (1082)
                      |+.|+||+..++ .++..+.+|...+.  +++++      ..+...+|+++.||+|+||....
T Consensus       461 D~kvyIWhr~sg-kll~~LsGHs~~vN--cVswN------P~~p~m~ASasDDgtIRIWg~~~  514 (519)
T KOG0293|consen  461 DSKVYIWHRISG-KLLAVLSGHSKTVN--CVSWN------PADPEMFASASDDGTIRIWGPSD  514 (519)
T ss_pred             CceEEEEEccCC-ceeEeecCCcceee--EEecC------CCCHHHhhccCCCCeEEEecCCc
Confidence            999999999999 88999999997776  77772      33556789999999999998764

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=1.7e-56  Score=475.08  Aligned_cols=574  Identities=15%  Similarity=0.232  Sum_probs=475.4

Q ss_pred             EEEecCCCeEEEEEcCCCcEEEEEcccccee-eeeceeeeccCCCCcccccccccCCCCceeEEEEecCCCeEEEEeCCC
Q 001415          364 MDFHPVQQTLLLVGTNVGDIGLWEVGSRERL-VLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRH  442 (1082)
Q Consensus       364 ~~~spdg~~llasgs~dg~i~iwd~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d~  442 (1082)
                      ++||++|+. |++.. ...|.+-|+.++... ..                  .-......+++++.+||+++|++++..+
T Consensus        25 ~~~s~nG~~-L~t~~-~d~Vi~idv~t~~~~l~s------------------~~~ed~d~ita~~l~~d~~~L~~a~rs~   84 (775)
T KOG0319|consen   25 VAWSSNGQH-LYTAC-GDRVIIIDVATGSIALPS------------------GSNEDEDEITALALTPDEEVLVTASRSQ   84 (775)
T ss_pred             eeECCCCCE-EEEec-CceEEEEEccCCceeccc------------------CCccchhhhheeeecCCccEEEEeeccc
Confidence            899999994 77765 346888899998873 21                  1334567899999999999999999999


Q ss_pred             eEEEEEccCCceeeEEEEeec-cccCeeEEEecCCCCceEEEEEeCCCcEEEEEccCCceeEEeecCCcCeEEEeeeecC
Q 001415          443 IVQIYSYHGGDEVRQHLEIDA-HVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKE  521 (1082)
Q Consensus       443 ~v~iwd~~~~~~~~~~~~~~~-h~~~V~~l~fs~dg~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~  521 (1082)
                      .+++|++.+++.++   .+.. |++||.-++|+|.|.  ++++|+.|+.++|||+..+.+.+.|+||.+.|.++.|++..
T Consensus        85 llrv~~L~tgk~ir---swKa~He~Pvi~ma~~~~g~--LlAtggaD~~v~VWdi~~~~~th~fkG~gGvVssl~F~~~~  159 (775)
T KOG0319|consen   85 LLRVWSLPTGKLIR---SWKAIHEAPVITMAFDPTGT--LLATGGADGRVKVWDIKNGYCTHSFKGHGGVVSSLLFHPHW  159 (775)
T ss_pred             eEEEEEcccchHhH---hHhhccCCCeEEEEEcCCCc--eEEeccccceEEEEEeeCCEEEEEecCCCceEEEEEeCCcc
Confidence            99999999998877   6776 999999999999997  89999999999999999999999999999999999999998


Q ss_pred             CceEEEEecCCCcEEEEecCCCCc-eeeecCCCCceEEEEEccCCCeeeecccccceeEEEecCCCCEEEEEeCCCeEEE
Q 001415          522 NIQFIFSTALDGKIKAWLYDNLGS-RVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKF  600 (1082)
Q Consensus       522 ~~~~l~s~~~dg~i~iwd~~~~~~-~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i  600 (1082)
                      +...|++|..|+++++||+.+... ...+..|...|+++++++|+.                     .+++++.|..+.+
T Consensus       160 ~~~lL~sg~~D~~v~vwnl~~~~tcl~~~~~H~S~vtsL~~~~d~~---------------------~~ls~~RDkvi~v  218 (775)
T KOG0319|consen  160 NRWLLASGATDGTVRVWNLNDKRTCLHTMILHKSAVTSLAFSEDSL---------------------ELLSVGRDKVIIV  218 (775)
T ss_pred             chhheeecCCCceEEEEEcccCchHHHHHHhhhhheeeeeeccCCc---------------------eEEEeccCcEEEE
Confidence            878899999999999999996555 667788888888888888876                     7999999999999


Q ss_pred             EECCCcceEEEEecCCCCCCcCeEEEcCC-----CCEEEEEECCCcEEEEEecCCccceeecccccccccccccccCCCC
Q 001415          601 WDMDSVQLLTSIDADGGLPASPRIRFNKD-----GCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKNGD  675 (1082)
Q Consensus       601 wd~~~~~~~~~~~~~~~~~~i~~~~~s~d-----g~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  675 (1082)
                      ||+.+.+....+.....   +.++.+-++     |.++++++.+|.+++||..++....+.-.......         .+
T Consensus       219 wd~~~~~~l~~lp~ye~---~E~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~~e~---------~~  286 (775)
T KOG0319|consen  219 WDLVQYKKLKTLPLYES---LESVVRLREELGGKGEYIITAGGSGVVQYWDSESGKCVYKQRQSDSEEI---------DH  286 (775)
T ss_pred             eehhhhhhhheechhhh---eeeEEEechhcCCcceEEEEecCCceEEEEecccchhhhhhccCCchhh---------hc
Confidence            99988887777765544   566777776     67999999999999999988843333222211111         11


Q ss_pred             ccccCCCCceeeeccCCceeEEEecccCCCCccccccccCcccccceeEEEEc-cCCceeeecccCCeEEEeeccccccC
Q 001415          676 VRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFT-NSGNAILALASNAIHLLWKWQRTERN  754 (1082)
Q Consensus       676 ~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s-~~~~~l~~~~~d~~i~iw~~~~~~~~  754 (1082)
                      ....+....++....|.++.++|.++......+..       ..+.|.++.|- |+.+.++++++.+.+++|+...... 
T Consensus       287 ~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG-------~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c-  358 (775)
T KOG0319|consen  287 LLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVG-------YNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYC-  358 (775)
T ss_pred             ceeccccCceEEEEccceEEEEEccccEEehhhcC-------CchhheeeeecCCccceEEEEeCCCceEEEecCCCce-
Confidence            12234455666777788999998876554444332       56788888875 5678899999999999996653221 


Q ss_pred             CCCCcccccCccccCCCCcceeecccCCCCCCCCccEEEeecCCCeEEEee-CCeEEEEecCCC----eeEEEECCCCCC
Q 001415          755 SSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTF----KTMATFMPPPPA  829 (1082)
Q Consensus       755 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~l~~~s-dg~i~iwd~~~~----~~~~~~~~~~~~  829 (1082)
                                           .  .+.  +|...|.++....+|-+|++|+ |.++++|.++++    -++....+|.+.
T Consensus       359 ---------------------~--ii~--GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~s  413 (775)
T KOG0319|consen  359 ---------------------Q--IIP--GHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNS  413 (775)
T ss_pred             ---------------------E--EEe--CchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccc
Confidence                                 1  122  3999999999778889999998 799999987433    345667899999


Q ss_pred             eeEEEEecCCCcEEEEEeCCCcEEEEeccccee---------eeeecccccCEEEEEEeCCCCEEEEEeCCCcEEEEEcC
Q 001415          830 ATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEV---------KSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSD  900 (1082)
Q Consensus       830 v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~---------~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~  900 (1082)
                      |.+++++.....++++++.|+++++|++...+.         ......|...|+|++++|+.+++||||.|.+.+||+++
T Consensus       414 vgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le  493 (775)
T KOG0319|consen  414 VGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLE  493 (775)
T ss_pred             cceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccceeeeccc
Confidence            999999986778999999999999999976221         12335799999999999999999999999999999999


Q ss_pred             CcccccceeeeccCCCCCCCCCCcEEEEcCCCcEEEE-EecCeEEEEEccCcceeeeeccCCCCcceeEEEEcCCCceEE
Q 001415          901 GWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVY  979 (1082)
Q Consensus       901 ~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~dg~~l~  979 (1082)
                      .     ........||.   .++.++.|+|..+.+++ +.|++|+||.+.++.|+.++.  ||...|..+.|-.+|+.|+
T Consensus       494 ~-----~~l~~vLsGH~---RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~e--GH~~aVlra~F~~~~~qli  563 (775)
T KOG0319|consen  494 Q-----LRLLGVLSGHT---RGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFE--GHTSAVLRASFIRNGKQLI  563 (775)
T ss_pred             C-----ceEEEEeeCCc---cceEEEEeccccceeEeccCCceEEEEEeccceeeeeec--CccceeEeeeeeeCCcEEE
Confidence            5     45778888998   78999999999999999 689999999999999999998  9999999999999999999


Q ss_pred             EeecCCcEEEEecCCceeeeeeCCCeecCCCCCCCCceeeEEEEeCCCCCeEEEEecCCcEEEEccCCCC
Q 001415          980 ACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESE 1049 (1082)
Q Consensus       980 t~s~dg~v~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~~~~~~~d~~~l~s~~~dg~v~vW~~~~~~ 1049 (1082)
                      +++.||.+++|++.++++++.+.       .| .+.++  +++-++ +..++++|+.||.|.+|.=.|.+
T Consensus       564 S~~adGliKlWnikt~eC~~tlD-------~H-~DrvW--aL~~~~-~~~~~~tgg~Dg~i~~wkD~Te~  622 (775)
T KOG0319|consen  564 SAGADGLIKLWNIKTNECEMTLD-------AH-NDRVW--ALSVSP-LLDMFVTGGGDGRIIFWKDVTEE  622 (775)
T ss_pred             eccCCCcEEEEeccchhhhhhhh-------hc-cceeE--EEeecC-ccceeEecCCCeEEEEeecCcHH
Confidence            99999999999999999999988       66 44477  555566 46799999999999999876655

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=4.3e-55  Score=464.35  Aligned_cols=547  Identities=13%  Similarity=0.189  Sum_probs=452.2

Q ss_pred             CCCCceEEEEecCCCeEEEEEcCCCcEEEEEccccceeeeeceeeeccCCCCcccccccccC-CCCceeEEEEecCCCeE
Q 001415          357 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKD-PGVSVNRVIWSPDGSLF  435 (1082)
Q Consensus       357 h~~~v~~~~~spdg~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~-h~~~V~~l~~spdg~~l  435 (1082)
                      ..+.+++++.+||+++ |++++....+++|++.+|+.+..                   .+. |+++|.-++|+|.|..|
T Consensus        61 d~d~ita~~l~~d~~~-L~~a~rs~llrv~~L~tgk~irs-------------------wKa~He~Pvi~ma~~~~g~Ll  120 (775)
T KOG0319|consen   61 DEDEITALALTPDEEV-LVTASRSQLLRVWSLPTGKLIRS-------------------WKAIHEAPVITMAFDPTGTLL  120 (775)
T ss_pred             chhhhheeeecCCccE-EEEeeccceEEEEEcccchHhHh-------------------HhhccCCCeEEEEEcCCCceE
Confidence            5689999999999995 88999999999999999987764                   444 99999999999999999


Q ss_pred             EEEeCCCeEEEEEccCCceeeEEEEeeccccCeeEEEecCCCCceEEEEEeCCCcEEEEEccCCc-eeEEeecCCcCeEE
Q 001415          436 GVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGA-KQYIFEGHEAPVYS  514 (1082)
Q Consensus       436 as~~~d~~v~iwd~~~~~~~~~~~~~~~h~~~V~~l~fs~dg~~~~l~s~s~d~~i~vwd~~~~~-~~~~~~~h~~~v~~  514 (1082)
                      |+|+.|+.|+|||+..+.+..   .|.||.+.|.++.|.|+-.+.+|++|+.|+++++||+.++. ++.++..|.+.|++
T Consensus       121 AtggaD~~v~VWdi~~~~~th---~fkG~gGvVssl~F~~~~~~~lL~sg~~D~~v~vwnl~~~~tcl~~~~~H~S~vts  197 (775)
T KOG0319|consen  121 ATGGADGRVKVWDIKNGYCTH---SFKGHGGVVSSLLFHPHWNRWLLASGATDGTVRVWNLNDKRTCLHTMILHKSAVTS  197 (775)
T ss_pred             EeccccceEEEEEeeCCEEEE---EecCCCceEEEEEeCCccchhheeecCCCceEEEEEcccCchHHHHHHhhhhheee
Confidence            999999999999999998776   79999999999999999876679999999999999999655 48888999999999


Q ss_pred             EeeeecCCceEEEEecCCCcEEEEecCCCCceeeecCCCCceEEEEEccCCCeeeecccccceeEEEecCCCCEEEEEeC
Q 001415          515 VCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGD  594 (1082)
Q Consensus       515 ~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~  594 (1082)
                      +.|.++  +..+++++.|..+.+||+...+.....+. ...+.++.+-+++.                ...+.+++++|.
T Consensus       198 L~~~~d--~~~~ls~~RDkvi~vwd~~~~~~l~~lp~-ye~~E~vv~l~~~~----------------~~~~~~~~TaG~  258 (775)
T KOG0319|consen  198 LAFSED--SLELLSVGRDKVIIVWDLVQYKKLKTLPL-YESLESVVRLREEL----------------GGKGEYIITAGG  258 (775)
T ss_pred             eeeccC--CceEEEeccCcEEEEeehhhhhhhheech-hhheeeEEEechhc----------------CCcceEEEEecC
Confidence            999766  47899999999999999966554444332 22344454444411                111458999999


Q ss_pred             CCeEEEEECCCcceEEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEecCCccceeecccccccccccccccCCC
Q 001415          595 DFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKNG  674 (1082)
Q Consensus       595 dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  674 (1082)
                      +|.+++||.+++++........ ...+..+...+....++..+.+..+.++|..+. ++.+.+-+....+.  .+.|   
T Consensus       259 ~g~~~~~d~es~~~~~~~~~~~-~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l-~i~k~ivG~ndEI~--Dm~~---  331 (775)
T KOG0319|consen  259 SGVVQYWDSESGKCVYKQRQSD-SEEIDHLLAIESMSQLLLVTAEQNLFLYDEDEL-TIVKQIVGYNDEIL--DMKF---  331 (775)
T ss_pred             CceEEEEecccchhhhhhccCC-chhhhcceeccccCceEEEEccceEEEEEcccc-EEehhhcCCchhhe--eeee---
Confidence            9999999999998877665443 223666666665566667778899999998887 67777777766665  3333   


Q ss_pred             CccccCCCCceeeeccCCceeEEEecccCCCCccccccccCcccccceeEEEEccCCceeeecccCCeEEEeeccccccC
Q 001415          675 DVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERN  754 (1082)
Q Consensus       675 ~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~  754 (1082)
                         ..|+.+.+++++....++++++.+....      -++  +|...|.++....+|..+++++.|.++++|.++.....
T Consensus       332 ---lG~e~~~laVATNs~~lr~y~~~~~~c~------ii~--GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~  400 (775)
T KOG0319|consen  332 ---LGPEESHLAVATNSPELRLYTLPTSYCQ------IIP--GHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSK  400 (775)
T ss_pred             ---cCCccceEEEEeCCCceEEEecCCCceE------EEe--CchhheeeeeecccCcEEEEecCCceEEEEEecCCcch
Confidence               2677899999999999999987764332      233  49999999998888889999999999999977321100


Q ss_pred             CCCCcccccCccccCCCCcceeecccCCCCCCCCccEEEeecCCC-eEEEee-CCeEEEEecCCCee---------EEEE
Q 001415          755 SSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDS-YVMSAS-GGKISLFNMMTFKT---------MATF  823 (1082)
Q Consensus       755 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~-~l~~~s-dg~i~iwd~~~~~~---------~~~~  823 (1082)
                                        ..++   ....+|.+.|.+++++..+- ++++++ |.++++|++...+.         ..+.
T Consensus       401 ------------------~~~~---a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~  459 (775)
T KOG0319|consen  401 ------------------SLCV---AQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTE  459 (775)
T ss_pred             ------------------hhhh---hhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHH
Confidence                              0011   11235999999999987654 677776 79999999975221         1133


Q ss_pred             CCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEecccceeeeeecccccCEEEEEEeCCCCEEEEEeCCCcEEEEEcCCcc
Q 001415          824 MPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWE  903 (1082)
Q Consensus       824 ~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~  903 (1082)
                      ..|...|++++++| +..++|+|+.|.+.+||++.......+|.||+..|+++.|+|..+.++|+|.|++|+||.+.+  
T Consensus       460 ~aHdKdIN~Vaia~-ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~--  536 (775)
T KOG0319|consen  460 RAHDKDINCVAIAP-NDKLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSIST--  536 (775)
T ss_pred             HhhcccccceEecC-CCceEEecccccceeeecccCceEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEecc--
Confidence            46889999999999 889999999999999999999999999999999999999999999999999999999999999  


Q ss_pred             cccceeeeccCCCCCCCCCCcEEEEcCCCcEEEE-EecCeEEEEEccCcceeeeeccCCCCcceeEEEEcCCCceEEEee
Q 001415          904 KQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACF  982 (1082)
Q Consensus       904 ~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~dg~~l~t~s  982 (1082)
                         ..++..++||.   ..|..+.|-.+|+.|++ +.||-+++|+++++.|+..+.  +|.+.|++++-+|++.+++||+
T Consensus       537 ---fSClkT~eGH~---~aVlra~F~~~~~qliS~~adGliKlWnikt~eC~~tlD--~H~DrvWaL~~~~~~~~~~tgg  608 (775)
T KOG0319|consen  537 ---FSCLKTFEGHT---SAVLRASFIRNGKQLISAGADGLIKLWNIKTNECEMTLD--AHNDRVWALSVSPLLDMFVTGG  608 (775)
T ss_pred             ---ceeeeeecCcc---ceeEeeeeeeCCcEEEeccCCCcEEEEeccchhhhhhhh--hccceeEEEeecCccceeEecC
Confidence               55788999998   78999999999999999 799999999999999999987  8999999999999999999999


Q ss_pred             cCCcEEEEecCCc
Q 001415          983 LDATVCVFSAANL  995 (1082)
Q Consensus       983 ~dg~v~vwd~~~~  995 (1082)
                      .||.|.+|.-.+.
T Consensus       609 ~Dg~i~~wkD~Te  621 (775)
T KOG0319|consen  609 GDGRIIFWKDVTE  621 (775)
T ss_pred             CCeEEEEeecCcH
Confidence            9999999965543

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=1.3e-50  Score=429.99  Aligned_cols=571  Identities=18%  Similarity=0.298  Sum_probs=445.0

Q ss_pred             eecCCCCCceEEEEecCCCeEEEEEcCCCcEEEEEccccceeeeeceeeeccCCCCcccccccccCCCCceeEEEEecCC
Q 001415          353 RTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDG  432 (1082)
Q Consensus       353 ~~~~h~~~v~~~~~spdg~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg  432 (1082)
                      ..+.+...|++++.||+|. +|++....|...+-+......+++..|                    ..+|.|+.|||||
T Consensus        50 l~~e~~~NI~~ialSp~g~-lllavdE~g~~~lvs~~~r~Vlh~f~f--------------------k~~v~~i~fSPng  108 (893)
T KOG0291|consen   50 LPLETRYNITRIALSPDGT-LLLAVDERGRALLVSLLSRSVLHRFNF--------------------KRGVGAIKFSPNG  108 (893)
T ss_pred             EEeecCCceEEEEeCCCce-EEEEEcCCCcEEEEecccceeeEEEee--------------------cCccceEEECCCC
Confidence            3445889999999999999 577778889999999988887775433                    4589999999999


Q ss_pred             CeEEEEeCCCeEEEEEccCCce-----eeEEEEeeccccCeeEEEecCCCCceEEEEEeCCCcEEEEEccCCce--eEEe
Q 001415          433 SLFGVAYSRHIVQIYSYHGGDE-----VRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAK--QYIF  505 (1082)
Q Consensus       433 ~~las~~~d~~v~iwd~~~~~~-----~~~~~~~~~h~~~V~~l~fs~dg~~~~l~s~s~d~~i~vwd~~~~~~--~~~~  505 (1082)
                      +++|+|. .+.+.||.......     .....++.+|...|.++.|+.|.+  +|++|+.|.++++|+++..+-  .+.+
T Consensus       109 ~~fav~~-gn~lqiw~~P~~~~~~~~pFvl~r~~~g~fddi~si~Ws~DSr--~l~~gsrD~s~rl~~v~~~k~~~~~~l  185 (893)
T KOG0291|consen  109 KFFAVGC-GNLLQIWHAPGEIKNEFNPFVLHRTYLGHFDDITSIDWSDDSR--LLVTGSRDLSARLFGVDGNKNLFTYAL  185 (893)
T ss_pred             cEEEEEe-cceeEEEecCcchhcccCcceEeeeecCCccceeEEEeccCCc--eEEeccccceEEEEEeccccccceEec
Confidence            9999985 46799998765432     233446789999999999999999  899999999999999987665  5778


Q ss_pred             ecCCcCeEEEeeeecCCceEEEEecCCCcEEEEecCCCCceeeec-----C---------CCCceEEEEEccCCCeeeec
Q 001415          506 EGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYE-----A---------PGRWCTTMAYSADGTRTYQG  571 (1082)
Q Consensus       506 ~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-----~---------~~~~v~~~~~s~d~~~~~~~  571 (1082)
                      .+|.+.|.++-|..+  ...+++.+.||.+.+|..........-.     +         ....+....|..- ++.+..
T Consensus       186 ~gHkd~VvacfF~~~--~~~l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~-~k~~ln  262 (893)
T KOG0291|consen  186 NGHKDYVVACFFGAN--SLDLYTVSKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKT-KKHYLN  262 (893)
T ss_pred             cCCCcceEEEEeccC--cceEEEEecCceEEEEEecCCCcccccccccccccccccccccchhhhcceEEEEE-Eeeeec
Confidence            899999988777543  3679999999999999876321111000     0         0001111111110 112222


Q ss_pred             ccccceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEEecCCCCCCcCeEEEcCCCCEEEEEECC-CcEEEEEecCC
Q 001415          572 FRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTND-NGIKILATSDG  650 (1082)
Q Consensus       572 ~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~d-g~i~iwd~~~~  650 (1082)
                      .....+.+.+|++.-+.++++-..|...+|++....++..+....+  .|..++|+..|.+|+.|+.. |.+-||+..+.
T Consensus       263 ~~~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~lih~LSis~~--~I~t~~~N~tGDWiA~g~~klgQLlVweWqsE  340 (893)
T KOG0291|consen  263 QNSSKVTAAAFHKGTNLLVVGFSSGEFGLYELPDFNLIHSLSISDQ--KILTVSFNSTGDWIAFGCSKLGQLLVWEWQSE  340 (893)
T ss_pred             ccccceeeeeccCCceEEEEEecCCeeEEEecCCceEEEEeecccc--eeeEEEecccCCEEEEcCCccceEEEEEeecc
Confidence            2335788999999999999999999999999999999999986655  79999999999999998764 78888887654


Q ss_pred             ccceeecccccccccccccccCCCCccccCCCCceeeeccCCceeEEEecccCCCCccccccccCcccccceeEEEEccC
Q 001415          651 IRLLRTFENLAYDASRTSENSKNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNS  730 (1082)
Q Consensus       651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~  730 (1082)
                       ..+                                                          +..++|...+.+++++||
T Consensus       341 -sYV----------------------------------------------------------lKQQgH~~~i~~l~YSpD  361 (893)
T KOG0291|consen  341 -SYV----------------------------------------------------------LKQQGHSDRITSLAYSPD  361 (893)
T ss_pred             -cee----------------------------------------------------------eeccccccceeeEEECCC
Confidence             111                                                          112338888999999999


Q ss_pred             CceeeecccCCeEEEeeccccccCCCCCcccccCccccCCCCcceeecccCCCCCCCCccEEEeecCCCeEEEee-CCeE
Q 001415          731 GNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKI  809 (1082)
Q Consensus       731 ~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~l~~~s-dg~i  809 (1082)
                      |+.+++++.||.|++||.                      .+|.+....   .+|...|+.+.|+..|+.+++.+ ||+|
T Consensus       362 gq~iaTG~eDgKVKvWn~----------------------~SgfC~vTF---teHts~Vt~v~f~~~g~~llssSLDGtV  416 (893)
T KOG0291|consen  362 GQLIATGAEDGKVKVWNT----------------------QSGFCFVTF---TEHTSGVTAVQFTARGNVLLSSSLDGTV  416 (893)
T ss_pred             CcEEEeccCCCcEEEEec----------------------cCceEEEEe---ccCCCceEEEEEEecCCEEEEeecCCeE
Confidence            999999999999998854                      455555432   23999999999999999999998 9999


Q ss_pred             EEEecCCCeeEEEECCCCC-CeeEEEEecCCCcEEEEEeCCC-cEEEEecccceeeeeecccccCEEEEEEeCCCCEEEE
Q 001415          810 SLFNMMTFKTMATFMPPPP-AATFLAFHPQDNNIIAIGMDDS-SIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVS  887 (1082)
Q Consensus       810 ~iwd~~~~~~~~~~~~~~~-~v~~l~~sp~~~~~lasg~~dg-~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s  887 (1082)
                      +.||+...+..+++..+.. ...|++..| .|.++..|+.|. .|++|++++|+++..+.||.++|.+++|+|++..|||
T Consensus       417 RAwDlkRYrNfRTft~P~p~QfscvavD~-sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS  495 (893)
T KOG0291|consen  417 RAWDLKRYRNFRTFTSPEPIQFSCVAVDP-SGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLAS  495 (893)
T ss_pred             EeeeecccceeeeecCCCceeeeEEEEcC-CCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEe
Confidence            9999999999999986543 568899999 888999998886 8999999999999999999999999999999999999


Q ss_pred             EeCCCcEEEEEcCCcccccceeeeccCCCCCCCCCCcEEEEcCCCcEEEE-EecCeEEEEEccCcceeeeeccC------
Q 001415          888 SGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFETTKLECVKQWVPR------  960 (1082)
Q Consensus       888 ~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~-~~d~~i~iwd~~~~~~~~~~~~~------  960 (1082)
                      +|.|.+|++||+-.... ..+.++..       ..+..++|+|||+.|++ ..||+|.+||...+..+..+...      
T Consensus       496 ~SWDkTVRiW~if~s~~-~vEtl~i~-------sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~g  567 (893)
T KOG0291|consen  496 GSWDKTVRIWDIFSSSG-TVETLEIR-------SDVLAVSFRPDGKELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGG  567 (893)
T ss_pred             ccccceEEEEEeeccCc-eeeeEeec-------cceeEEEEcCCCCeEEEEEecceEEEEEhhhceeeccccchhhcccc
Confidence            99999999999977421 11222222       45789999999999999 68999999999876665333211      


Q ss_pred             ------------CCCcceeEEEEcCCCceEEEeecCCcEEEEecCCceeeeeeCCCe-----------------------
Q 001415          961 ------------ESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSA----------------------- 1005 (1082)
Q Consensus       961 ------------~h~~~i~~l~~s~dg~~l~t~s~dg~v~vwd~~~~~~~~~~~~~~----------------------- 1005 (1082)
                                  ......+.+++|+||.+|++|+..+.|++|++.++.+++++....                       
T Consensus       568 R~~~D~~ta~~sa~~K~Ftti~ySaDG~~IlAgG~sn~iCiY~v~~~vllkkfqiS~N~sLdg~~efln~rkmtEfG~~~  647 (893)
T KOG0291|consen  568 RKETDRITAENSAKGKTFTTICYSADGKCILAGGESNSICIYDVPEGVLLKKFQISDNRSLDGVLEFLNRRKMTEFGNMD  647 (893)
T ss_pred             ccccceeehhhcccCCceEEEEEcCCCCEEEecCCcccEEEEECchhheeeeEEeccccchhHHHHHhccccccccCCcc
Confidence                        124678999999999999999999999999999998877665211                       


Q ss_pred             ---------------ecCC--------CCCCCCceeeEEEEeCCCCCeEEEEecCCcEEEEccCC
Q 001415         1006 ---------------YLPA--------GVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLE 1047 (1082)
Q Consensus      1006 ---------------~~~~--------gh~~~~v~~~~~~~~~~d~~~l~s~~~dg~v~vW~~~~ 1047 (1082)
                                     .+|.        .+....|.+.++.|+|. |+-+|.++..|- .+|.+.+
T Consensus       648 LiD~e~~~~e~~i~~~lpG~~~gdlssRr~rpeIrv~sv~fsPt-graFAaatTEGl-~IYsld~  710 (893)
T KOG0291|consen  648 LIDTEESDLEGRIDIALPGVQRGDLSSRRFRPEIRVTSVQFSPT-GRAFAAATTEGL-LIYSLDT  710 (893)
T ss_pred             ccccccccccccccccCCccccCCccccccCceEEEEEEEECCC-cCeeeeecccce-EEEecCC
Confidence                           0000        01122467889999995 788888887774 4555544

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=100.00  E-value=5e-50  Score=408.97  Aligned_cols=574  Identities=15%  Similarity=0.151  Sum_probs=433.8

Q ss_pred             EEEecCCCeEEEEEcCCCcEEEEEccccceeeeeceeeeccCCCCcccccccccCCCCceeEEEEecCCCeEEEEeCCCe
Q 001415          364 MDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHI  443 (1082)
Q Consensus       364 ~~~spdg~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d~~  443 (1082)
                      +.-.|.|..++.+.  ...|.+-+++......                   ++.+|..+++-..|||.|.|+|+|...|+
T Consensus        24 ig~dpkgd~ilY~n--Gksv~ir~i~~~~~~~-------------------iYtEH~~~vtVAkySPsG~yiASGD~sG~   82 (603)
T KOG0318|consen   24 IGGDPKGDNILYTN--GKSVIIRNIDNPASVD-------------------IYTEHAHQVTVAKYSPSGFYIASGDVSGK   82 (603)
T ss_pred             eccCCCCCeEEEeC--CCEEEEEECCCcccee-------------------eeccccceeEEEEeCCCceEEeecCCcCc
Confidence            44567777666653  4567777777665543                   48899999999999999999999999999


Q ss_pred             EEEEEccCCceeeEEEEeeccccCeeEEEecCCCCceEEEEE-eCCCcEEEEEccCCceeEEeecCCcCeEEEeeeecCC
Q 001415          444 VQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITC-GDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKEN  522 (1082)
Q Consensus       444 v~iwd~~~~~~~~~~~~~~~h~~~V~~l~fs~dg~~~~l~s~-s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~  522 (1082)
                      |||||....+.+. ..+++.-.++|..++|+.|+++ ++|+| +.++..+++-.++|..+..+.||...|.++.|-|...
T Consensus        83 vRIWdtt~~~hiL-Knef~v~aG~I~Di~Wd~ds~R-I~avGEGrerfg~~F~~DSG~SvGei~GhSr~ins~~~KpsRP  160 (603)
T KOG0318|consen   83 VRIWDTTQKEHIL-KNEFQVLAGPIKDISWDFDSKR-IAAVGEGRERFGHVFLWDSGNSVGEITGHSRRINSVDFKPSRP  160 (603)
T ss_pred             EEEEeccCcceee-eeeeeecccccccceeCCCCcE-EEEEecCccceeEEEEecCCCccceeeccceeEeeeeccCCCc
Confidence            9999998754432 2267778899999999999996 34444 3444555666678999999999999999999987765


Q ss_pred             ceEEEEecCCCcEEEEecCCCCceeeecCCCCceEEEEEccCCCeeeecccccceeEEEecCCCCEEEEEeCCCeEEEEE
Q 001415          523 IQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWD  602 (1082)
Q Consensus       523 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd  602 (1082)
                       -.+++|+.|++|.+|+-...+....+..|...|.++.|+|||.                     +|++++.||.+.+||
T Consensus       161 -fRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~---------------------~Fat~gsDgki~iyD  218 (603)
T KOG0318|consen  161 -FRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGS---------------------RFATAGSDGKIYIYD  218 (603)
T ss_pred             -eEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCC---------------------eEEEecCCccEEEEc
Confidence             6899999999999996555444455556666666666666655                     899999999999999


Q ss_pred             CCCcceEEEEe-cCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEecCCccceeecccccccccccccccCCCCccccCC
Q 001415          603 MDSVQLLTSID-ADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKNGDVRSLAD  681 (1082)
Q Consensus       603 ~~~~~~~~~~~-~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~  681 (1082)
                      -.+|+.+..+. ...+...|.+++|+||++.+++++.|.+++|||+.+. .+.+++.-... +....+.       ..-.
T Consensus       219 Gktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~-slv~t~~~~~~-v~dqqvG-------~lWq  289 (603)
T KOG0318|consen  219 GKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTN-SLVSTWPMGST-VEDQQVG-------CLWQ  289 (603)
T ss_pred             CCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeecc-ceEEEeecCCc-hhceEEE-------EEEe
Confidence            99999999987 3344558999999999999999999999999999988 55555543222 1000111       1223


Q ss_pred             CCceeeeccCCceeEEEecccCCCCccccccccCcccccceeEEEEccCCceeeecccCCeEEEeeccccccCCCCCccc
Q 001415          682 VKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATA  761 (1082)
Q Consensus       682 ~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~  761 (1082)
                      ...|++.+.+|++..++.........+       .+|...|+++..++++++|++++.||.|.-|+......        
T Consensus       290 kd~lItVSl~G~in~ln~~d~~~~~~i-------~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~--------  354 (603)
T KOG0318|consen  290 KDHLITVSLSGTINYLNPSDPSVLKVI-------SGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTS--------  354 (603)
T ss_pred             CCeEEEEEcCcEEEEecccCCChhhee-------cccccceeEEEEcCCCCEEEeeccCceEEEEecCCccc--------
Confidence            778899999999999998876522222       34999999999999999999999999999997653321        


Q ss_pred             ccCccccCCCCcceeecccCCCCCCCCccEEEeecCCCeEEEeeCCeEEEEecCCCeeEEE--ECCCCCCeeEEEEecCC
Q 001415          762 SVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMAT--FMPPPPAATFLAFHPQD  839 (1082)
Q Consensus       762 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~l~~~sdg~i~iwd~~~~~~~~~--~~~~~~~v~~l~~sp~~  839 (1082)
                                    -  .+.+..|...|.+++.+..+.++.++-|+++++.++........  .+ ......+++..+ +
T Consensus       355 --------------~--~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~-lg~QP~~lav~~-d  416 (603)
T KOG0318|consen  355 --------------D--RLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVK-LGSQPKGLAVLS-D  416 (603)
T ss_pred             --------------c--ccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceee-cCCCceeEEEcC-C
Confidence                          1  12234599999999999988888888899999998864433222  12 222344888888 6


Q ss_pred             CcEEEEEeCCCcEEEEecccceeeeeecccccCEEEEEEeCCCCEEEEEeCCCcEEEEEcCCcccccceeeeccCCCCCC
Q 001415          840 NNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPT  919 (1082)
Q Consensus       840 ~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~  919 (1082)
                      +.+++..+.++.+.+=|...-   ..+. -.-...+++++|++..++.|+.|+.|+||.+...+.........   |.  
T Consensus       417 ~~~avv~~~~~iv~l~~~~~~---~~~~-~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~---h~--  487 (603)
T KOG0318|consen  417 GGTAVVACISDIVLLQDQTKV---SSIP-IGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKLLE---HR--  487 (603)
T ss_pred             CCEEEEEecCcEEEEecCCcc---eeec-cccccceEEEcCCCCEEEEecccceEEEEEecCCcccceeeeec---cc--
Confidence            666666666655444433321   1221 22346789999999999999999999999999866433222222   22  


Q ss_pred             CCCCcEEEEcCCCcEEEEE-ecCeEEEEEccCcceeeeeccCCCCcceeEEEEcCCCceEEEeecCCcEEEEecCCceee
Q 001415          920 AQSDTRVQFHQDQIHFLVV-HETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLR  998 (1082)
Q Consensus       920 ~~~v~~~~fspdg~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~dg~~l~t~s~dg~v~vwd~~~~~~~  998 (1082)
                       +.+++++||||+.+||++ ..+.+.+||+.+.+..... -.-|...|.+++|||+.+++|||+-|..|.||++......
T Consensus       488 -a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~~~~~-w~FHtakI~~~aWsP~n~~vATGSlDt~Viiysv~kP~~~  565 (603)
T KOG0318|consen  488 -AAITDVAYSPDGAYLAAGDASRKVVLYDVASREVKTNR-WAFHTAKINCVAWSPNNKLVATGSLDTNVIIYSVKKPAKH  565 (603)
T ss_pred             -CCceEEEECCCCcEEEEeccCCcEEEEEcccCceecce-eeeeeeeEEEEEeCCCceEEEeccccceEEEEEccChhhh
Confidence             678999999999999996 5688999999888773322 2248999999999999999999999999999999887666


Q ss_pred             eeeCCCeecCCCCCCCCceeeEEEEeCCCCCeEEEEecCCcEEEEccC
Q 001415          999 CRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPL 1046 (1082)
Q Consensus       999 ~~~~~~~~~~~gh~~~~v~~~~~~~~~~d~~~l~s~~~dg~v~vW~~~ 1046 (1082)
                      ..+.      ..|... ++  .+.|..  ...+++.+.|.+|++|.+.
T Consensus       566 i~ik------nAH~~g-Vn--~v~wld--e~tvvSsG~Da~iK~W~v~  602 (603)
T KOG0318|consen  566 IIIK------NAHLGG-VN--SVAWLD--ESTVVSSGQDANIKVWNVT  602 (603)
T ss_pred             eEec------cccccC-ce--eEEEec--CceEEeccCcceeEEeccc
Confidence            4433      233333 44  788884  6899999999999999874

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=2.4e-53  Score=415.81  Aligned_cols=376  Identities=20%  Similarity=0.342  Sum_probs=298.1

Q ss_pred             cCCCCCCCCcceeeecCCCCCceEEEEecCCCeEEEEEcCCCcEEEEEccccceeeeeceeeeccCCCCcccccccccCC
Q 001415          340 AFSTPEDLPKTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDP  419 (1082)
Q Consensus       340 ~~~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h  419 (1082)
                      +.+......++-..+-+|.++|-|++|||+|++ ||+|+.|.++++||..+...+.+                   .++|
T Consensus        97 avfrvrpvtrCssS~~GH~e~Vl~~~fsp~g~~-l~tGsGD~TvR~WD~~TeTp~~t-------------------~KgH  156 (480)
T KOG0271|consen   97 AVFRVRPVTRCSSSIAGHGEAVLSVQFSPTGSR-LVTGSGDTTVRLWDLDTETPLFT-------------------CKGH  156 (480)
T ss_pred             hhhcccccceeccccCCCCCcEEEEEecCCCce-EEecCCCceEEeeccCCCCccee-------------------ecCC
Confidence            344555666777777789999999999999996 99999999999999999887764                   8999


Q ss_pred             CCceeEEEEecCCCeEEEEeCCCeEEEEEccCCceeeEEEEeeccccCeeEEEecC-----CCCceEEEEEeCCCcEEEE
Q 001415          420 GVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSH-----PNKQLCVITCGDDKTIKVW  494 (1082)
Q Consensus       420 ~~~V~~l~~spdg~~las~~~d~~v~iwd~~~~~~~~~~~~~~~h~~~V~~l~fs~-----dg~~~~l~s~s~d~~i~vw  494 (1082)
                      ...|.|++|||||+.||+|+.||+|++||.++|+++..  .+.+|...|++++|-|     ..+  +|++++.||+|+||
T Consensus       157 ~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~~g~--~l~gH~K~It~Lawep~hl~p~~r--~las~skDg~vrIW  232 (480)
T KOG0271|consen  157 KNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQIGR--ALRGHKKWITALAWEPLHLVPPCR--RLASSSKDGSVRIW  232 (480)
T ss_pred             ccEEEEEEECCCcchhhccccCCeEEEecCCCCCcccc--cccCcccceeEEeecccccCCCcc--ceecccCCCCEEEE
Confidence            99999999999999999999999999999999987765  6889999999999965     455  79999999999999


Q ss_pred             EccCCceeEEeecCCcCeEEEeeeecCCceEEEEecCCCcEEEEecCCCCceeeecCCCCceEEEEEccCCCeeeecccc
Q 001415          495 DATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRK  574 (1082)
Q Consensus       495 d~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~  574 (1082)
                      |+..+.++..+.||+.+|+|++|-..   .+|++|+.|++|++|+...+.....+.+|.++|..++.+.|--        
T Consensus       233 d~~~~~~~~~lsgHT~~VTCvrwGG~---gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~--------  301 (480)
T KOG0271|consen  233 DTKLGTCVRTLSGHTASVTCVRWGGE---GLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYV--------  301 (480)
T ss_pred             EccCceEEEEeccCccceEEEEEcCC---ceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhh--------
Confidence            99999999999999999999998432   4999999999999999988888888888988888888765531        


Q ss_pred             cceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEEecCCCC-CCcCeEEEcCCCCEEEEEECCCcEEEEEecCCccc
Q 001415          575 RSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGL-PASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRL  653 (1082)
Q Consensus       575 ~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-~~i~~~~~s~dg~~l~~~~~dg~i~iwd~~~~~~~  653 (1082)
                                    |-+|..|.+        +............ -.-.....-..+..|++|++|.++.+|+.....+ 
T Consensus       302 --------------LRtgaf~~t--------~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kk-  358 (480)
T KOG0271|consen  302 --------------LRTGAFDHT--------GRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKK-  358 (480)
T ss_pred             --------------hhccccccc--------cccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEeccccccc-
Confidence                          111111100        0000000000000 0000000011123344444444444443211100 


Q ss_pred             eeecccccccccccccccCCCCccccCCCCceeeeccCCceeEEEecccCCCCccccccccCcccccceeEEEEccCCce
Q 001415          654 LRTFENLAYDASRTSENSKNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNA  733 (1082)
Q Consensus       654 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~  733 (1082)
                                                                                         +|           
T Consensus       359 -------------------------------------------------------------------pi-----------  360 (480)
T KOG0271|consen  359 -------------------------------------------------------------------PI-----------  360 (480)
T ss_pred             -------------------------------------------------------------------ch-----------
Confidence                                                                               00           


Q ss_pred             eeecccCCeEEEeeccccccCCCCCcccccCccccCCCCcceeecccCCCCCCCCccEEEeecCCCeEEEee-CCeEEEE
Q 001415          734 ILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLF  812 (1082)
Q Consensus       734 l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~l~~~s-dg~i~iw  812 (1082)
                                                                 .   +..+|..-|..+.||||++++|+++ |..|++|
T Consensus       361 -------------------------------------------~---rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW  394 (480)
T KOG0271|consen  361 -------------------------------------------T---RMTGHQALVNHVSFSPDGRYIASASFDKSVKLW  394 (480)
T ss_pred             -------------------------------------------h---hhhchhhheeeEEECCCccEEEEeecccceeee
Confidence                                                       0   0113888899999999999999998 8999999


Q ss_pred             ecCCCeeEEEECCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEecccceeeeeecccccCEEEEEEeCCCCEEEEEeCCC
Q 001415          813 NMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADS  892 (1082)
Q Consensus       813 d~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg  892 (1082)
                      |..+|+.+.+|++|-+.|..++|+. |.++|++|+.|.++++|++++.++...|.||.+.|.++.|+|||..+++|+.|.
T Consensus       395 ~g~tGk~lasfRGHv~~VYqvawsa-DsRLlVS~SkDsTLKvw~V~tkKl~~DLpGh~DEVf~vDwspDG~rV~sggkdk  473 (480)
T KOG0271|consen  395 DGRTGKFLASFRGHVAAVYQVAWSA-DSRLLVSGSKDSTLKVWDVRTKKLKQDLPGHADEVFAVDWSPDGQRVASGGKDK  473 (480)
T ss_pred             eCCCcchhhhhhhccceeEEEEecc-CccEEEEcCCCceEEEEEeeeeeecccCCCCCceEEEEEecCCCceeecCCCce
Confidence            9999999999999999999999999 999999999999999999999999999999999999999999999999999999


Q ss_pred             cEEEEE
Q 001415          893 QLCVWS  898 (1082)
Q Consensus       893 ~i~vwd  898 (1082)
                      .+++|.
T Consensus       474 v~~lw~  479 (480)
T KOG0271|consen  474 VLRLWR  479 (480)
T ss_pred             EEEeec
Confidence            999994

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=100.00  E-value=5.4e-49  Score=401.46  Aligned_cols=540  Identities=17%  Similarity=0.214  Sum_probs=429.1

Q ss_pred             eeeecCCCCCceEEEEecCCCeEEEEEcCCCcEEEEEccccceeeeeceeeeccCCCCcccccccccCCCCceeEEEEec
Q 001415          351 VTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP  430 (1082)
Q Consensus       351 ~~~~~~h~~~v~~~~~spdg~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~sp  430 (1082)
                      +....+|..+++-..|||.|-| +|+|...|.|+|||....+.+...+|+                 .-.++|..|+|++
T Consensus        52 ~~iYtEH~~~vtVAkySPsG~y-iASGD~sG~vRIWdtt~~~hiLKnef~-----------------v~aG~I~Di~Wd~  113 (603)
T KOG0318|consen   52 VDIYTEHAHQVTVAKYSPSGFY-IASGDVSGKVRIWDTTQKEHILKNEFQ-----------------VLAGPIKDISWDF  113 (603)
T ss_pred             eeeeccccceeEEEEeCCCceE-EeecCCcCcEEEEeccCcceeeeeeee-----------------ecccccccceeCC
Confidence            4456679999999999999995 999999999999999875555443333                 3466999999999


Q ss_pred             CCCeEEEEeCC----CeEEEEEccCCceeeEEEEeeccccCeeEEEecCCCCceEEEEEeCCCcEEEEEccCCceeEEee
Q 001415          431 DGSLFGVAYSR----HIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFE  506 (1082)
Q Consensus       431 dg~~las~~~d----~~v~iwd~~~~~~~~~~~~~~~h~~~V~~l~fs~dg~~~~l~s~s~d~~i~vwd~~~~~~~~~~~  506 (1082)
                      |+++|++.++.    |.+.+||  +|..+.   ++.||...|.+++|-|.... .++||++|++|.+|+=.--+...++.
T Consensus       114 ds~RI~avGEGrerfg~~F~~D--SG~SvG---ei~GhSr~ins~~~KpsRPf-Ri~T~sdDn~v~ffeGPPFKFk~s~r  187 (603)
T KOG0318|consen  114 DSKRIAAVGEGRERFGHVFLWD--SGNSVG---EITGHSRRINSVDFKPSRPF-RIATGSDDNTVAFFEGPPFKFKSSFR  187 (603)
T ss_pred             CCcEEEEEecCccceeEEEEec--CCCccc---eeeccceeEeeeeccCCCce-EEEeccCCCeEEEeeCCCeeeeeccc
Confidence            99999887653    3455555  555455   78999999999999998876 89999999999999855556667788


Q ss_pred             cCCcCeEEEeeeecCCceEEEEecCCCcEEEEecCCCCceeeec---CCCCceEEEEEccCCCeeeecccccceeEEEec
Q 001415          507 GHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYE---APGRWCTTMAYSADGTRTYQGFRKRSLGVVQFD  583 (1082)
Q Consensus       507 ~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~---~~~~~v~~~~~s~d~~~~~~~~~~~~i~~~~~~  583 (1082)
                      .|...|.++.|+|+  |.++++.+.||.+.+||-.+++....+.   .|.+.|.+++|+||++                 
T Consensus       188 ~HskFV~~VRysPD--G~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~-----------------  248 (603)
T KOG0318|consen  188 EHSKFVNCVRYSPD--GSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDST-----------------  248 (603)
T ss_pred             ccccceeeEEECCC--CCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCc-----------------
Confidence            89999999998765  5899999999999999999998888777   6666777777776665                 


Q ss_pred             CCCCEEEEEeCCCeEEEEECCCcceEEEEecCCCC-CCcCeEEEcCCCCEEEEEECCCcEEEEEecCCccceeecccccc
Q 001415          584 TTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGL-PASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAY  662 (1082)
Q Consensus       584 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-~~i~~~~~s~dg~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~  662 (1082)
                          ++++++.|.+++|||+.+.+++.++...... .....+.|.  +..|++.+.+|.|.+++...+. ..+.+.+|..
T Consensus       249 ----~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWq--kd~lItVSl~G~in~ln~~d~~-~~~~i~GHnK  321 (603)
T KOG0318|consen  249 ----QFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQ--KDHLITVSLSGTINYLNPSDPS-VLKVISGHNK  321 (603)
T ss_pred             ----eEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEe--CCeEEEEEcCcEEEEecccCCC-hhheeccccc
Confidence                8999999999999999999999988755431 122344454  6688999999999999999985 8899999998


Q ss_pred             cccccccccCCCCccccCCCCceeeeccCCceeEEEecccCCCCccccccccCcccccceeEEEEccCCceeeecccCCe
Q 001415          663 DASRTSENSKNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAI  742 (1082)
Q Consensus       663 ~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~  742 (1082)
                      .+.  ++..       +++++++++++.||.|.-|+...+...      ++.+..|...|.+++-+..+. +++.+.|.+
T Consensus       322 ~IT--aLtv-------~~d~~~i~SgsyDG~I~~W~~~~g~~~------~~~g~~h~nqI~~~~~~~~~~-~~t~g~Dd~  385 (603)
T KOG0318|consen  322 SIT--ALTV-------SPDGKTIYSGSYDGHINSWDSGSGTSD------RLAGKGHTNQIKGMAASESGE-LFTIGWDDT  385 (603)
T ss_pred             cee--EEEE-------cCCCCEEEeeccCceEEEEecCCcccc------ccccccccceEEEEeecCCCc-EEEEecCCe
Confidence            887  5666       899999999999999999999865433      233345999999999887665 888899999


Q ss_pred             EEEeeccccccCCCCCcccccCccccCCCCcceeecccCCCCCCCCccEEEeecCCCeEEEeeCCeEEEEecCCCeeEEE
Q 001415          743 HLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMAT  822 (1082)
Q Consensus       743 i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~l~~~sdg~i~iwd~~~~~~~~~  822 (1082)
                      +++.++.........                 ...       -.....+++..+++.+++.+.++.|.+..-.+  .+..
T Consensus       386 l~~~~~~~~~~t~~~-----------------~~~-------lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~--~~~~  439 (603)
T KOG0318|consen  386 LRVISLKDNGYTKSE-----------------VVK-------LGSQPKGLAVLSDGGTAVVACISDIVLLQDQT--KVSS  439 (603)
T ss_pred             EEEEecccCcccccc-----------------eee-------cCCCceeEEEcCCCCEEEEEecCcEEEEecCC--ccee
Confidence            998876543321111                 000       23334489999999888888877777765322  2222


Q ss_pred             ECCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEecccceee--eeecccccCEEEEEEeCCCCEEEEEeCCCcEEEEEcC
Q 001415          823 FMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVK--SKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSD  900 (1082)
Q Consensus       823 ~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~--~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~  900 (1082)
                      .. ..-...+++++| ++..+|+|++||.|+||.+..+++.  ..+..|.++|++++||||+.+||+++..+.+.+||+.
T Consensus       440 ~~-~~y~~s~vAv~~-~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~  517 (603)
T KOG0318|consen  440 IP-IGYESSAVAVSP-DGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGDASRKVVLYDVA  517 (603)
T ss_pred             ec-cccccceEEEcC-CCCEEEEecccceEEEEEecCCcccceeeeecccCCceEEEECCCCcEEEEeccCCcEEEEEcc
Confidence            22 344678999999 9999999999999999999876533  4567899999999999999999999999999999999


Q ss_pred             CcccccceeeeccCCCCCCCCCCcEEEEcCCCcEEEE-EecCeEEEEEccCcceeeeeccCCCCcceeEEEEcCCCceEE
Q 001415          901 GWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVY  979 (1082)
Q Consensus       901 ~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~dg~~l~  979 (1082)
                      +.+...    ....-|.   ..|.+++|+|+.+++|+ +-|..|.||+++..... .....+|...|+.+.|-. ...|+
T Consensus       518 s~~~~~----~~w~FHt---akI~~~aWsP~n~~vATGSlDt~Viiysv~kP~~~-i~iknAH~~gVn~v~wld-e~tvv  588 (603)
T KOG0318|consen  518 SREVKT----NRWAFHT---AKINCVAWSPNNKLVATGSLDTNVIIYSVKKPAKH-IIIKNAHLGGVNSVAWLD-ESTVV  588 (603)
T ss_pred             cCceec----ceeeeee---eeEEEEEeCCCceEEEeccccceEEEEEccChhhh-eEeccccccCceeEEEec-CceEE
Confidence            976522    2222233   67899999999999999 68999999999876655 333347888899999974 56788


Q ss_pred             EeecCCcEEEEecC
Q 001415          980 ACFLDATVCVFSAA  993 (1082)
Q Consensus       980 t~s~dg~v~vwd~~  993 (1082)
                      +.+.|..|++|++.
T Consensus       589 SsG~Da~iK~W~v~  602 (603)
T KOG0318|consen  589 SSGQDANIKVWNVT  602 (603)
T ss_pred             eccCcceeEEeccc
Confidence            89999999999874

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=1.6e-49  Score=421.54  Aligned_cols=580  Identities=15%  Similarity=0.220  Sum_probs=448.7

Q ss_pred             cCCCeEEEEEcCCCcEEEEEccccceeeeeceeeeccCCCCcccccccccCCCCceeEEEEecCCCeEEEEeCCCeEEEE
Q 001415          368 PVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIY  447 (1082)
Q Consensus       368 pdg~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d~~v~iw  447 (1082)
                      ..|++  ++++....|.+||+.+|+.....                 +.......|+|++-+||.-.||+|..||.|+||
T Consensus        32 ~~Gr~--va~~a~E~vn~WdlRtge~~~~l-----------------~~~~~k~evt~l~~~~d~l~lAVGYaDGsVqif   92 (888)
T KOG0306|consen   32 GKGRA--VAVSALEQVNIWDLRTGEIEKKL-----------------ILLKKKAEVTCLRSSDDILLLAVGYADGSVQIF   92 (888)
T ss_pred             CCCcE--EEEeccccEeEEeeecchhhhhh-----------------hhhcccceEEEeeccCCcceEEEEecCceEEee
Confidence            45774  33445678999999999554321                 122344699999999999999999999999999


Q ss_pred             EccCCceeeEEEEeeccccCeeEEEecCCCCceEEEEEeCCCcEEEEEccCCceeEEeecCCcCeEEEeeeecCCceEEE
Q 001415          448 SYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIF  527 (1082)
Q Consensus       448 d~~~~~~~~~~~~~~~h~~~V~~l~fs~dg~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~  527 (1082)
                      +..++....   ++.||...|+++.|...|.  .|+|||.|+.|.+||+-...-+..+.||...|+..-|...  ..+++
T Consensus        93 ~~~s~~~~~---tfngHK~AVt~l~fd~~G~--rlaSGskDt~IIvwDlV~E~Gl~rL~GHkd~iT~~~F~~~--~~~lv  165 (888)
T KOG0306|consen   93 SLESEEILI---TFNGHKAAVTTLKFDKIGT--RLASGSKDTDIIVWDLVGEEGLFRLRGHKDSITQALFLNG--DSFLV  165 (888)
T ss_pred             ccCCCceee---eecccccceEEEEEcccCc--eEeecCCCccEEEEEeccceeeEEeecchHHHhHHhccCC--CeEEE
Confidence            999886554   8999999999999999999  7999999999999999998889999999999998877642  37999


Q ss_pred             EecCCCcEEEEecCCCCceeeecCCCCceEEEEEccCCCeeeecccccceeEEEecCCCCEEEEEeCCCeEEEEECCCc-
Q 001415          528 STALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSV-  606 (1082)
Q Consensus       528 s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-  606 (1082)
                      +.+.|+.|++||+++..+..+.-.|...+..+++.+                       +.+++++.|+.+++|++... 
T Consensus       166 S~sKDs~iK~WdL~tqhCf~Thvd~r~Eiw~l~~~~-----------------------~~lvt~~~dse~~v~~L~~~~  222 (888)
T KOG0306|consen  166 SVSKDSMIKFWDLETQHCFETHVDHRGEIWALVLDE-----------------------KLLVTAGTDSELKVWELAFED  222 (888)
T ss_pred             EeccCceEEEEecccceeeeEEecccceEEEEEEec-----------------------ceEEEEecCCceEEEEeeccc
Confidence            999999999999999888877777777777777665                       26899999999999998211 


Q ss_pred             -----------ceEEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEecCCccceeeccc-------ccc------
Q 001415          607 -----------QLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFEN-------LAY------  662 (1082)
Q Consensus       607 -----------~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-------~~~------  662 (1082)
                                 +...++...+. .....++..++++++++-+.|..+.++.+.+..+..+.+..       +..      
T Consensus       223 D~~~~~~~~s~~~~G~~~rqsk-~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~  301 (888)
T KOG0306|consen  223 DEKETNRYISTKLRGTFIRQSK-GREINLVTDFSDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENED  301 (888)
T ss_pred             ccccccccceeeccceeeeccC-CceeEEeecCcccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhcccccccc
Confidence                       11112221111 23445777788999999999999999988765332222211       000      


Q ss_pred             cc-------------cccccccCCCCccccCCCCceeeeccCCceeEEEecccCCC--CccccccccCcccccceeEEEE
Q 001415          663 DA-------------SRTSENSKNGDVRSLADVKPRITEESNDKSKVWKLTELSEP--NQCRSLRLPENLRATKISRLIF  727 (1082)
Q Consensus       663 ~~-------------~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~--~~~~~~~~~~~~~~~~i~~~~~  727 (1082)
                      .+             .+....+...+...++.....++.-.++++..+.++.....  ...+.-.+...+|...|.++++
T Consensus       302 ~v~~sl~~~i~r~~~ir~~~kiks~dv~~~~~~~~~lv~l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~v  381 (888)
T KOG0306|consen  302 DVEKSLSDEIKRLETIRTSAKIKSFDVTPSGGTENTLVLLANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCV  381 (888)
T ss_pred             chhhhHHHHHHHHHheechhheeEEEEEecCCcceeEEEeecCceEEEEeccCCCCCccccccceeeeccchhheeEEEe
Confidence            00             00011111122222333332333366788888888762211  1112222223459999999999


Q ss_pred             ccCCceeeecccCCeEEEeeccccccCCCCCcccccCccccCCCCcceeecccCCCCCCCCccEEEeecCCCeEEEeeC-
Q 001415          728 TNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASG-  806 (1082)
Q Consensus       728 s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~l~~~sd-  806 (1082)
                      +.+...+++++ ++.+.+|+.                      .+.+++...     ....+.+..|-|.++++++|.+ 
T Consensus       382 S~d~~~~~Sga-~~SikiWn~----------------------~t~kciRTi-----~~~y~l~~~Fvpgd~~Iv~G~k~  433 (888)
T KOG0306|consen  382 SSDSILLASGA-GESIKIWNR----------------------DTLKCIRTI-----TCGYILASKFVPGDRYIVLGTKN  433 (888)
T ss_pred             ecCceeeeecC-CCcEEEEEc----------------------cCcceeEEe-----ccccEEEEEecCCCceEEEeccC
Confidence            99987555554 456777754                      444444432     3447888999999999999985 


Q ss_pred             CeEEEEecCCCeeEEEECCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEeccc-----ceeeeeec-------ccccCEE
Q 001415          807 GKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRV-----DEVKSKLK-------GHSKRIT  874 (1082)
Q Consensus       807 g~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~-----~~~~~~l~-------~h~~~V~  874 (1082)
                      |.+.+||+.+...+.+.+.|.+.+..++.+| |+..+++|+.|.+|++||..-     |.....+.       .-...|.
T Consensus       434 Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~p-D~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL  512 (888)
T KOG0306|consen  434 GELQVFDLASASLVETIRAHDGAIWSISLSP-DNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVL  512 (888)
T ss_pred             CceEEEEeehhhhhhhhhccccceeeeeecC-CCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEE
Confidence            9999999999999999999999999999999 899999999999999999752     21111121       1346799


Q ss_pred             EEEEeCCCCEEEEEeCCCcEEEEEcCCcccccceeeeccCCCCCCCCCCcEEEEcCCCcEEEE-EecCeEEEEEccCcce
Q 001415          875 GLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFETTKLEC  953 (1082)
Q Consensus       875 ~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~-~~d~~i~iwd~~~~~~  953 (1082)
                      |+.+||||++||.+=-|.+|+||-+++     .++.-...||.   .+|.++..|||++.+++ +.|+.|++|-++-|.|
T Consensus       513 ~v~~Spdgk~LaVsLLdnTVkVyflDt-----lKFflsLYGHk---LPV~smDIS~DSklivTgSADKnVKiWGLdFGDC  584 (888)
T KOG0306|consen  513 CVSVSPDGKLLAVSLLDNTVKVYFLDT-----LKFFLSLYGHK---LPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDC  584 (888)
T ss_pred             EEEEcCCCcEEEEEeccCeEEEEEecc-----eeeeeeecccc---cceeEEeccCCcCeEEeccCCCceEEeccccchh
Confidence            999999999999999999999999999     55677888998   68999999999999999 6899999999999999


Q ss_pred             eeeeccCCCCcceeEEEEcCCCceEEEeecCCcEEEEecCCceeeeeeCCCeecCCCCCCCCceeeEEEEeCCCCCeEEE
Q 001415          954 VKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFAL 1033 (1082)
Q Consensus       954 ~~~~~~~~h~~~i~~l~~s~dg~~l~t~s~dg~v~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~~~~~~~d~~~l~s 1033 (1082)
                      .+.+.  +|.+.|.++.|-|+..++.+++.|+.|+-||....+.+..+.       ||... ++  +++-+| +|.++++
T Consensus       585 HKS~f--AHdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~-------~H~~e-v~--cLav~~-~G~~vvs  651 (888)
T KOG0306|consen  585 HKSFF--AHDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKLD-------GHHSE-VW--CLAVSP-NGSFVVS  651 (888)
T ss_pred             hhhhh--cccCceeEEEEcccceeEEEecCcceEEeechhhhhhheeec-------cchhe-ee--eeEEcC-CCCeEEe
Confidence            99988  899999999999999999999999999999999999999888       66444 66  677778 5899999


Q ss_pred             EecCCcEEEEccCC
Q 001415         1034 GLSDGGVHVFEPLE 1047 (1082)
Q Consensus      1034 ~~~dg~v~vW~~~~ 1047 (1082)
                      ++.|..|++|+-..
T Consensus       652 ~shD~sIRlwE~td  665 (888)
T KOG0306|consen  652 SSHDKSIRLWERTD  665 (888)
T ss_pred             ccCCceeEeeeccC
Confidence            99999999999766

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=9.7e-49  Score=415.59  Aligned_cols=550  Identities=13%  Similarity=0.183  Sum_probs=425.7

Q ss_pred             CCCCCceEEEEecCCCeEEEEEcCCCcEEEEEccccceeeeeceeeeccCCCCcccccccccCCCCceeEEEEecCCCeE
Q 001415          356 NQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLF  435 (1082)
Q Consensus       356 ~h~~~v~~~~~spdg~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l  435 (1082)
                      ....+|+|+.-+||.- +||+|..||.|+||+..++..+.+                   +.||..+|+++.|+..|..|
T Consensus        63 ~~k~evt~l~~~~d~l-~lAVGYaDGsVqif~~~s~~~~~t-------------------fngHK~AVt~l~fd~~G~rl  122 (888)
T KOG0306|consen   63 KKKAEVTCLRSSDDIL-LLAVGYADGSVQIFSLESEEILIT-------------------FNGHKAAVTTLKFDKIGTRL  122 (888)
T ss_pred             cccceEEEeeccCCcc-eEEEEecCceEEeeccCCCceeee-------------------ecccccceEEEEEcccCceE
Confidence            3447899999999987 699999999999999988766553                   88999999999999999999


Q ss_pred             EEEeCCCeEEEEEccCCceeeEEEEeeccccCeeEEEecCCCCceEEEEEeCCCcEEEEEccCCceeEEeecCCcCeEEE
Q 001415          436 GVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSV  515 (1082)
Q Consensus       436 as~~~d~~v~iwd~~~~~~~~~~~~~~~h~~~V~~l~fs~dg~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~  515 (1082)
                      |+|+.|+.|.+||+-......   .+.||.+.|+..-|..+.+  ++++.|.|+.|++||+++..|..+.-.|.+.++++
T Consensus       123 aSGskDt~IIvwDlV~E~Gl~---rL~GHkd~iT~~~F~~~~~--~lvS~sKDs~iK~WdL~tqhCf~Thvd~r~Eiw~l  197 (888)
T KOG0306|consen  123 ASGSKDTDIIVWDLVGEEGLF---RLRGHKDSITQALFLNGDS--FLVSVSKDSMIKFWDLETQHCFETHVDHRGEIWAL  197 (888)
T ss_pred             eecCCCccEEEEEeccceeeE---EeecchHHHhHHhccCCCe--EEEEeccCceEEEEecccceeeeEEecccceEEEE
Confidence            999999999999998766554   7999999999999998777  89999999999999999999999999999999999


Q ss_pred             eeeecCCceEEEEecCCCcEEEEecCCCCceeeecCCCCceEEEEEccCCCeeeecccccceeEEEecCCCCEEEEEeCC
Q 001415          516 CPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDD  595 (1082)
Q Consensus       516 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d  595 (1082)
                      ++.+    ..+++++.|+.+++|++......      ....+.+++..-|.  +.....+...-+..++++.++++-+.|
T Consensus       198 ~~~~----~~lvt~~~dse~~v~~L~~~~D~------~~~~~~~s~~~~G~--~~rqsk~R~i~l~~d~s~r~~~c~g~d  265 (888)
T KOG0306|consen  198 VLDE----KLLVTAGTDSELKVWELAFEDDE------KETNRYISTKLRGT--FIRQSKGREINLVTDFSDRFLVCQGAD  265 (888)
T ss_pred             EEec----ceEEEEecCCceEEEEeeccccc------ccccccceeeccce--eeeccCCceeEEeecCcccEEEEecch
Confidence            9865    47999999999999998321111      00112223333232  111122234445667777788899999


Q ss_pred             CeEEEEECCCcceEEE-------------E-------------------ecCCCCCCcCeEEEcCCCC---EEEEEECCC
Q 001415          596 FSIKFWDMDSVQLLTS-------------I-------------------DADGGLPASPRIRFNKDGC---LLAVSTNDN  640 (1082)
Q Consensus       596 g~i~iwd~~~~~~~~~-------------~-------------------~~~~~~~~i~~~~~s~dg~---~l~~~~~dg  640 (1082)
                      ..+.++.+.+.+.+..             .                   ..-.....+.++.+.|++.   .|+. -.++
T Consensus       266 ~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~~~i~r~~~ir~~~kiks~dv~~~~~~~~~lv~-l~nN  344 (888)
T KOG0306|consen  266 KVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDDVEKSLSDEIKRLETIRTSAKIKSFDVTPSGGTENTLVL-LANN  344 (888)
T ss_pred             hhhhheeecCHHHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHheechhheeEEEEEecCCcceeEEE-eecC
Confidence            9999998865321100             0                   0000012356777777543   2333 6678


Q ss_pred             cEEEEEecCCccc--------eeecccccccccccccccCCCCccccCCCCceeeeccCCceeEEEecccCCCCcccccc
Q 001415          641 GIKILATSDGIRL--------LRTFENLAYDASRTSENSKNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLR  712 (1082)
Q Consensus       641 ~i~iwd~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~  712 (1082)
                      ++.+|.+......        .-.+.+|...+.  ++++       +.+...+++ +..+.+++|+..+.+....+    
T Consensus       345 tv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVR--sl~v-------S~d~~~~~S-ga~~SikiWn~~t~kciRTi----  410 (888)
T KOG0306|consen  345 TVEWYSLENSGKTSPEADRTSNIEIGGHRSDVR--SLCV-------SSDSILLAS-GAGESIKIWNRDTLKCIRTI----  410 (888)
T ss_pred             ceEEEEeccCCCCCccccccceeeeccchhhee--EEEe-------ecCceeeee-cCCCcEEEEEccCcceeEEe----
Confidence            8888887652111        123345555444  4444       555444444 45589999999875443332    


Q ss_pred             ccCcccccceeEEEEccCCceeeecccCCeEEEeeccccccCCCCCcccccCccccCCCCcceeecccCCCCCCCCccEE
Q 001415          713 LPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCF  792 (1082)
Q Consensus       713 ~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l  792 (1082)
                           ..+.+.+..|.|.+++++.+..+|.+.+||+.....                      +.. .  ..|.+.|.++
T Consensus       411 -----~~~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l----------------------~Et-i--~AHdgaIWsi  460 (888)
T KOG0306|consen  411 -----TCGYILASKFVPGDRYIVLGTKNGELQVFDLASASL----------------------VET-I--RAHDGAIWSI  460 (888)
T ss_pred             -----ccccEEEEEecCCCceEEEeccCCceEEEEeehhhh----------------------hhh-h--hccccceeee
Confidence                 344788899999999999999999999998764321                      111 1  1399999999


Q ss_pred             EeecCCCeEEEee-CCeEEEEecCC-----CeeEEEEC-------CCCCCeeEEEEecCCCcEEEEEeCCCcEEEEeccc
Q 001415          793 ALSKNDSYVMSAS-GGKISLFNMMT-----FKTMATFM-------PPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRV  859 (1082)
Q Consensus       793 ~~s~dg~~l~~~s-dg~i~iwd~~~-----~~~~~~~~-------~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~  859 (1082)
                      +.+||++.+++|+ |.+|++||..-     +...+.+.       .-...|.|+.+|| |+++||++--|.+|+||-+.+
T Consensus       461 ~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Sp-dgk~LaVsLLdnTVkVyflDt  539 (888)
T KOG0306|consen  461 SLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSP-DGKLLAVSLLDNTVKVYFLDT  539 (888)
T ss_pred             eecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcC-CCcEEEEEeccCeEEEEEecc
Confidence            9999999999998 78999999751     22211111       1356799999999 999999999999999999999


Q ss_pred             ceeeeeecccccCEEEEEEeCCCCEEEEEeCCCcEEEEEcCCcccccceeeeccCCCCCCCCCCcEEEEcCCCcEEEE-E
Q 001415          860 DEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-V  938 (1082)
Q Consensus       860 ~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~-~  938 (1082)
                      -+....+.||.-||.||.+|||++.++|||.|.+|++|-++-|.+     .....+|.   ..|.++.|-|+...+.+ +
T Consensus       540 lKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDC-----HKS~fAHd---DSvm~V~F~P~~~~FFt~g  611 (888)
T KOG0306|consen  540 LKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDC-----HKSFFAHD---DSVMSVQFLPKTHLFFTCG  611 (888)
T ss_pred             eeeeeeecccccceeEEeccCCcCeEEeccCCCceEEeccccchh-----hhhhhccc---CceeEEEEcccceeEEEec
Confidence            999999999999999999999999999999999999999998765     44455565   67899999998888877 7


Q ss_pred             ecCeEEEEEccCcceeeeeccCCCCcceeEEEEcCCCceEEEeecCCcEEEEecCCceee
Q 001415          939 HETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLR  998 (1082)
Q Consensus       939 ~d~~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~dg~~l~t~s~dg~v~vwd~~~~~~~  998 (1082)
                      .|+.++-||..+.++++.+.  +|...|++++.+|+|.+++++|.|.+|++|......++
T Consensus       612 KD~kvKqWDg~kFe~iq~L~--~H~~ev~cLav~~~G~~vvs~shD~sIRlwE~tde~~~  669 (888)
T KOG0306|consen  612 KDGKVKQWDGEKFEEIQKLD--GHHSEVWCLAVSPNGSFVVSSSHDKSIRLWERTDEILI  669 (888)
T ss_pred             CcceEEeechhhhhhheeec--cchheeeeeEEcCCCCeEEeccCCceeEeeeccCccee
Confidence            89999999999999999887  89999999999999999999999999999987764443

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=5.1e-46  Score=395.19  Aligned_cols=545  Identities=15%  Similarity=0.236  Sum_probs=421.2

Q ss_pred             eEEEEecCCCeEEEEEcCCCcEEEEEccccceeeeeceeeeccCCCCcccccccccCCCCceeEEEEecCCCeEEEEeCC
Q 001415          362 MSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSR  441 (1082)
Q Consensus       362 ~~~~~spdg~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d  441 (1082)
                      -.+.|++||.. +. ....+.|.++|+...+...                   ..-.+...|.+++.||+|.+|++...+
T Consensus        18 Gnl~ft~dG~s-vi-SPvGNrvsv~dLknN~S~T-------------------l~~e~~~NI~~ialSp~g~lllavdE~   76 (893)
T KOG0291|consen   18 GNLVFTKDGNS-VI-SPVGNRVSVFDLKNNKSYT-------------------LPLETRYNITRIALSPDGTLLLAVDER   76 (893)
T ss_pred             CcEEECCCCCE-EE-eccCCEEEEEEccCCccee-------------------EEeecCCceEEEEeCCCceEEEEEcCC
Confidence            45789999985 33 3457889999997755432                   134567799999999999999999999


Q ss_pred             CeEEEEEccCCceeeEEEEeeccccCeeEEEecCCCCceEEEEEeCCCcEEEEEccCC--------ceeEEeecCCcCeE
Q 001415          442 HIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNG--------AKQYIFEGHEAPVY  513 (1082)
Q Consensus       442 ~~v~iwd~~~~~~~~~~~~~~~h~~~V~~l~fs~dg~~~~l~s~s~d~~i~vwd~~~~--------~~~~~~~~h~~~v~  513 (1082)
                      |...+-++.....+..   + ....+|.|+.|||||+  ++|.|. .+.+.||.....        ...+++.+|...|.
T Consensus        77 g~~~lvs~~~r~Vlh~---f-~fk~~v~~i~fSPng~--~fav~~-gn~lqiw~~P~~~~~~~~pFvl~r~~~g~fddi~  149 (893)
T KOG0291|consen   77 GRALLVSLLSRSVLHR---F-NFKRGVGAIKFSPNGK--FFAVGC-GNLLQIWHAPGEIKNEFNPFVLHRTYLGHFDDIT  149 (893)
T ss_pred             CcEEEEecccceeeEE---E-eecCccceEEECCCCc--EEEEEe-cceeEEEecCcchhcccCcceEeeeecCCcccee
Confidence            9999998887654432   2 2356899999999999  455544 578999976432        22356789999999


Q ss_pred             EEeeeecCCceEEEEecCCCcEEEEecCCCCc--eeeecCCCCceEEEEEccCCCeeeecccccceeEEEecCCCCEEEE
Q 001415          514 SVCPHHKENIQFIFSTALDGKIKAWLYDNLGS--RVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLA  591 (1082)
Q Consensus       514 ~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~--~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~i~~~~~~~~~~~l~~  591 (1082)
                      ++.|+.+.  ++|++|+.|-.+++|+++..+.  ...+.+|...|...-|..+..                     .+++
T Consensus       150 si~Ws~DS--r~l~~gsrD~s~rl~~v~~~k~~~~~~l~gHkd~VvacfF~~~~~---------------------~l~t  206 (893)
T KOG0291|consen  150 SIDWSDDS--RLLVTGSRDLSARLFGVDGNKNLFTYALNGHKDYVVACFFGANSL---------------------DLYT  206 (893)
T ss_pred             EEEeccCC--ceEEeccccceEEEEEeccccccceEeccCCCcceEEEEeccCcc---------------------eEEE
Confidence            99997544  7999999999999999987666  345556666666666655544                     6889


Q ss_pred             EeCCCeEEEEECCCc-----------------------ce---------EEEEecCCCCCCcCeEEEcCCCCEEEEEECC
Q 001415          592 AGDDFSIKFWDMDSV-----------------------QL---------LTSIDADGGLPASPRIRFNKDGCLLAVSTND  639 (1082)
Q Consensus       592 ~~~dg~i~iwd~~~~-----------------------~~---------~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~d  639 (1082)
                      .+.||.+.+|.....                       +.         ....-.......+++.+|++..+.|++|-..
T Consensus       207 vskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t~~lvvgFss  286 (893)
T KOG0291|consen  207 VSKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHKGTNLLVVGFSS  286 (893)
T ss_pred             EecCceEEEEEecCCCcccccccccccccccccccccchhhhcceEEEEEEeeeecccccceeeeeccCCceEEEEEecC
Confidence            999999999977511                       00         0000011111346677777777777777777


Q ss_pred             CcEEEEEecCCccceeecccccccccccccccCCCCccccCCCCceeeeccCCceeEEEecccCCCCccccccccCcccc
Q 001415          640 NGIKILATSDGIRLLRTFENLAYDASRTSENSKNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRA  719 (1082)
Q Consensus       640 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~  719 (1082)
                      |...+|++..- .+++.+                                                   ..       ..
T Consensus       287 G~f~LyelP~f-~lih~L---------------------------------------------------Si-------s~  307 (893)
T KOG0291|consen  287 GEFGLYELPDF-NLIHSL---------------------------------------------------SI-------SD  307 (893)
T ss_pred             CeeEEEecCCc-eEEEEe---------------------------------------------------ec-------cc
Confidence            77777765433 222111                                                   10       45


Q ss_pred             cceeEEEEccCCceeeecccC-CeEEEeeccccccCCCCCcccccCccccCCCCcceeecccCCCCCCCCccEEEeecCC
Q 001415          720 TKISRLIFTNSGNAILALASN-AIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKND  798 (1082)
Q Consensus       720 ~~i~~~~~s~~~~~l~~~~~d-~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg  798 (1082)
                      .+|..++|+..|..++.++.. |++.+|+++...+                         .++.++|...+.++++||||
T Consensus       308 ~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsY-------------------------VlKQQgH~~~i~~l~YSpDg  362 (893)
T KOG0291|consen  308 QKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESY-------------------------VLKQQGHSDRITSLAYSPDG  362 (893)
T ss_pred             ceeeEEEecccCCEEEEcCCccceEEEEEeeccce-------------------------eeeccccccceeeEEECCCC
Confidence            678999999999999998887 9999999875433                         12334599999999999999


Q ss_pred             CeEEEee-CCeEEEEecCCCeeEEEECCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEecccceeeeeecccc-cCEEEE
Q 001415          799 SYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHS-KRITGL  876 (1082)
Q Consensus       799 ~~l~~~s-dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~-~~V~~l  876 (1082)
                      +++|+|+ ||+|+|||..++-|..++..|...|+.+.|+. .++.+++.+-||+|+.||+...+..+++.... -...|+
T Consensus       363 q~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~-~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~Qfscv  441 (893)
T KOG0291|consen  363 QLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTA-RGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCV  441 (893)
T ss_pred             cEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEe-cCCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEE
Confidence            9999998 69999999999999999999999999999999 99999999999999999999999988887542 345678


Q ss_pred             EEeCCCCEEEEEeCCC-cEEEEEcCCcccccceeeeccCCCCCCCCCCcEEEEcCCCcEEEE-EecCeEEEEEccCc-ce
Q 001415          877 AFSHALNVLVSSGADS-QLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFETTKL-EC  953 (1082)
Q Consensus       877 ~~s~d~~~l~s~s~Dg-~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~-~~d~~i~iwd~~~~-~~  953 (1082)
                      +..|.|..+..|+.|. .|.||++++|+     .+....||.   ++|.+++|+|+|..|++ +-|++|++||+-.. ..
T Consensus       442 avD~sGelV~AG~~d~F~IfvWS~qTGq-----llDiLsGHE---gPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~  513 (893)
T KOG0291|consen  442 AVDPSGELVCAGAQDSFEIFVWSVQTGQ-----LLDILSGHE---GPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGT  513 (893)
T ss_pred             EEcCCCCEEEeeccceEEEEEEEeecCe-----eeehhcCCC---CcceeeEEccccCeEEeccccceEEEEEeeccCce
Confidence            8888899999999886 49999999954     678888998   78999999999999999 68999999997433 23


Q ss_pred             eeeeccCCCCcceeEEEEcCCCceEEEeecCCcEEEEecCCceeeeeeCCCeecCCC----------CCCCCceeeEEEE
Q 001415          954 VKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAG----------VSSSNVHPLVIAA 1023 (1082)
Q Consensus       954 ~~~~~~~~h~~~i~~l~~s~dg~~l~t~s~dg~v~vwd~~~~~~~~~~~~~~~~~~g----------h~~~~v~~~~~~~ 1023 (1082)
                      +.++   .+...++.++|+|||+-||+++-||.|.+||...+..+..|....-+..|          ++...-.-+.+.|
T Consensus       514 vEtl---~i~sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~y  590 (893)
T KOG0291|consen  514 VETL---EIRSDVLAVSFRPDGKELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICY  590 (893)
T ss_pred             eeeE---eeccceeEEEEcCCCCeEEEEEecceEEEEEhhhceeeccccchhhccccccccceeehhhcccCCceEEEEE
Confidence            3333   34678999999999999999999999999999999888666533323222          2233344568999


Q ss_pred             eCCCCCeEEEEecCCcEEEEccCCCC--Ccccc
Q 001415         1024 HPQEPNEFALGLSDGGVHVFEPLESE--GKWGV 1054 (1082)
Q Consensus      1024 ~~~d~~~l~s~~~dg~v~vW~~~~~~--~~~~~ 1054 (1082)
                      ++ ||..+++||....|.++++.++.  .+|..
T Consensus       591 Sa-DG~~IlAgG~sn~iCiY~v~~~vllkkfqi  622 (893)
T KOG0291|consen  591 SA-DGKCILAGGESNSICIYDVPEGVLLKKFQI  622 (893)
T ss_pred             cC-CCCEEEecCCcccEEEEECchhheeeeEEe
Confidence            99 79999999999999999999987  44444

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=5.9e-50  Score=392.07  Aligned_cols=362  Identities=18%  Similarity=0.250  Sum_probs=301.2

Q ss_pred             ccCCCCceeEEEEecCCCeEEEEeCCCeEEEEEccCCceeeEEEEeeccccCeeEEEecCCCCceEEEEEeCCCcEEEEE
Q 001415          416 VKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWD  495 (1082)
Q Consensus       416 ~~~h~~~V~~l~~spdg~~las~~~d~~v~iwd~~~~~~~~~~~~~~~h~~~V~~l~fs~dg~~~~l~s~s~d~~i~vwd  495 (1082)
                      +.||.++|.|++|||+|+.||+|+.|.++++||+.+.....   +.++|...|.|++|+|||+  .||+|+.||+|++||
T Consensus       111 ~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~---t~KgH~~WVlcvawsPDgk--~iASG~~dg~I~lwd  185 (480)
T KOG0271|consen  111 IAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLF---TCKGHKNWVLCVAWSPDGK--KIASGSKDGSIRLWD  185 (480)
T ss_pred             cCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcce---eecCCccEEEEEEECCCcc--hhhccccCCeEEEec
Confidence            78999999999999999999999999999999999987665   8999999999999999999  799999999999999


Q ss_pred             ccCCcee-EEeecCCcCeEEEeeee---cCCceEEEEecCCCcEEEEecCCCCceeeecCCCCceEEEEEccCCCeeeec
Q 001415          496 ATNGAKQ-YIFEGHEAPVYSVCPHH---KENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQG  571 (1082)
Q Consensus       496 ~~~~~~~-~~~~~h~~~v~~~~~~~---~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~  571 (1082)
                      .++|+++ +.+.+|...|++++|.|   .++..+|++++.||.++|||+..+.+...+.+|...|+++.|..+|      
T Consensus       186 pktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~g------  259 (480)
T KOG0271|consen  186 PKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGEG------  259 (480)
T ss_pred             CCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcCCc------
Confidence            9998876 68999999999999975   3556799999999999999999999999999999999999998776      


Q ss_pred             ccccceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEecCCc
Q 001415          572 FRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGI  651 (1082)
Q Consensus       572 ~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~iwd~~~~~  651 (1082)
                                      ++++++.|++|++|+...|.+...+++|.+  .|+.++++.|- .|-+|..|.+          
T Consensus       260 ----------------liySgS~DrtIkvw~a~dG~~~r~lkGHah--wvN~lalsTdy-~LRtgaf~~t----------  310 (480)
T KOG0271|consen  260 ----------------LIYSGSQDRTIKVWRALDGKLCRELKGHAH--WVNHLALSTDY-VLRTGAFDHT----------  310 (480)
T ss_pred             ----------------eEEecCCCceEEEEEccchhHHHhhcccch--heeeeeccchh-hhhccccccc----------
Confidence                            599999999999999999999999998887  78888877542 1111111100          


Q ss_pred             cceeecccccccccccccccCCCCccccCCCCceeeeccCCceeEEEecccCCCCccccccccCcccccceeEEEEccCC
Q 001415          652 RLLRTFENLAYDASRTSENSKNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSG  731 (1082)
Q Consensus       652 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~  731 (1082)
                                                    +...-..+                 +.+.-                    
T Consensus       311 ------------------------------~~~~~~~s-----------------e~~~~--------------------  323 (480)
T KOG0271|consen  311 ------------------------------GRKPKSFS-----------------EEQKK--------------------  323 (480)
T ss_pred             ------------------------------cccCCChH-----------------HHHHH--------------------
Confidence                                          00000000                 00000                    


Q ss_pred             ceeeecccCCeEEEeeccccccCCCCCcccccCccccCCCCcceeecccCCCCCCCCccEEEeecCCCeEEEeeC-CeEE
Q 001415          732 NAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASG-GKIS  810 (1082)
Q Consensus       732 ~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~l~~~sd-g~i~  810 (1082)
                                                      .+.-                      +..+.-..+..+++|+| .++.
T Consensus       324 --------------------------------Al~r----------------------Y~~~~~~~~erlVSgsDd~tlf  349 (480)
T KOG0271|consen  324 --------------------------------ALER----------------------YEAVLKDSGERLVSGSDDFTLF  349 (480)
T ss_pred             --------------------------------HHHH----------------------HHHhhccCcceeEEecCCceEE
Confidence                                            0000                      00011123457788875 7799


Q ss_pred             EEecC-CCeeEEEECCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEecccceeeeeecccccCEEEEEEeCCCCEEEEEe
Q 001415          811 LFNMM-TFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSG  889 (1082)
Q Consensus       811 iwd~~-~~~~~~~~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s  889 (1082)
                      +|+.. +.+++..+.+|...|+.+.||| |++++|+++.|..|++|+-.+|+.+..|+||-++|+.++||.|.++|++|+
T Consensus       350 lW~p~~~kkpi~rmtgHq~lVn~V~fSP-d~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvawsaDsRLlVS~S  428 (480)
T KOG0271|consen  350 LWNPFKSKKPITRMTGHQALVNHVSFSP-DGRYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSADSRLLVSGS  428 (480)
T ss_pred             EecccccccchhhhhchhhheeeEEECC-CccEEEEeecccceeeeeCCCcchhhhhhhccceeEEEEeccCccEEEEcC
Confidence            99876 4457888999999999999999 999999999999999999999999999999999999999999999999999


Q ss_pred             CCCcEEEEEcCCcccccceeeeccCCCCCCCCCCcEEEEcCCCcEEEE-EecCeEEEEE
Q 001415          890 ADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFE  947 (1082)
Q Consensus       890 ~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~-~~d~~i~iwd  947 (1082)
                      .|.++++|++.+.     ++.....||.   ..|.++.|+|||..+++ +.|+.+++|.
T Consensus       429 kDsTLKvw~V~tk-----Kl~~DLpGh~---DEVf~vDwspDG~rV~sggkdkv~~lw~  479 (480)
T KOG0271|consen  429 KDSTLKVWDVRTK-----KLKQDLPGHA---DEVFAVDWSPDGQRVASGGKDKVLRLWR  479 (480)
T ss_pred             CCceEEEEEeeee-----eecccCCCCC---ceEEEEEecCCCceeecCCCceEEEeec
Confidence            9999999999994     3455666776   68999999999999999 6899999994

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=100.00  E-value=1.1e-43  Score=373.52  Aligned_cols=605  Identities=15%  Similarity=0.185  Sum_probs=399.6

Q ss_pred             ceEEEEecCCCeEEEEEcCCCcEEEEEccccceeeeeceeeeccCCCCcccccccccCCCCceeEEEEecCCCeEEEEe-
Q 001415          361 PMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAY-  439 (1082)
Q Consensus       361 v~~~~~spdg~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~-  439 (1082)
                      -..++-+|-.- ++|. -....|.++|++..+..+                   ++..|..+++|+|||++|+|+|+|- 
T Consensus        40 ~~gLa~~p~Sg-l~aY-pAGCvVVlfn~~~~tQ~h-------------------lvnssRk~~t~vAfS~~GryvatGEc   98 (1080)
T KOG1408|consen   40 ANGLASVPCSG-LCAY-PAGCVVVLFNVDSCTQSH-------------------LVNSSRKPLTCVAFSQNGRYVATGEC   98 (1080)
T ss_pred             CCccccccccc-ceee-ccCcEEEEEcccccchhh-------------------eecccCcceeEEEEcCCCcEEEeccc
Confidence            34556666555 3443 234678899987655443                   4778888999999999999999984 


Q ss_pred             -CCCeEEEEEccCCceeeEEEEeeccccCeeEEEecCCCCceEEEEEeC--CCcEEEEEccCCceeEEeecCCcCeEEEe
Q 001415          440 -SRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGD--DKTIKVWDATNGAKQYIFEGHEAPVYSVC  516 (1082)
Q Consensus       440 -~d~~v~iwd~~~~~~~~~~~~~~~h~~~V~~l~fs~dg~~~~l~s~s~--d~~i~vwd~~~~~~~~~~~~h~~~v~~~~  516 (1082)
                       ....+++|++.....+.   ++..|...|+|++|+|.++  |+++.+.  |-.|.+||++.......-+ -...|.+++
T Consensus        99 G~~pa~kVw~la~h~vVA---EfvdHKY~vtcvaFsp~~k--yvvSVGsQHDMIVnv~dWr~N~~~asnk-iss~Vsav~  172 (1080)
T KOG1408|consen   99 GRTPASKVWSLAFHGVVA---EFVDHKYNVTCVAFSPGNK--YVVSVGSQHDMIVNVNDWRVNSSGASNK-ISSVVSAVA  172 (1080)
T ss_pred             CCCccceeeeeccccchh---hhhhccccceeeeecCCCc--EEEeeccccceEEEhhhhhhcccccccc-cceeEEEEE
Confidence             55679999999877665   7889999999999999999  7887764  4457889887654443322 346788888


Q ss_pred             eeecCCceEEEEecCCCcEEEEecCCCCceee---ecCCC-----------------C---ceEEEEEccCCCe------
Q 001415          517 PHHKENIQFIFSTALDGKIKAWLYDNLGSRVD---YEAPG-----------------R---WCTTMAYSADGTR------  567 (1082)
Q Consensus       517 ~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~---~~~~~-----------------~---~v~~~~~s~d~~~------  567 (1082)
                      |+  .+|.++++.+ ...|++|.++.......   +.+..                 .   .-...+++..|..      
T Consensus       173 fs--EdgSYfvT~g-nrHvk~wyl~~~~KykdpiPl~gRs~~lg~lr~n~f~avaCg~gicAestfait~qGhLvEFSsR  249 (1080)
T KOG1408|consen  173 FS--EDGSYFVTSG-NRHVKLWYLQIQSKYKDPIPLPGRSYFLGNLRFNEFLAVACGVGICAESTFAITAQGHLVEFSSR  249 (1080)
T ss_pred             Ec--cCCceeeeee-eeeEEEEEeeccccccCCccccchhhhccccccchhhhhhhcCcccccceEEEecccceeeechh
Confidence            75  5557888776 67899999987652210   00000                 0   0012233333321      


Q ss_pred             -eee---cccccceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEEec----------------------CCCCCCc
Q 001415          568 -TYQ---GFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDA----------------------DGGLPAS  621 (1082)
Q Consensus       568 -~~~---~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~----------------------~~~~~~i  621 (1082)
                       ++.   ..+.....|++.+  .+++++|+.+|.|++|+..+-....++..                      .......
T Consensus       250 RLLDKWVqcRTTnAnCIcVs--~r~I~cgCa~g~vrlFnp~tL~y~~Tlpr~halg~d~a~~~q~~~~~s~~~~a~fPD~  327 (1080)
T KOG1408|consen  250 RLLDKWVQCRTTNANCICVS--SRLIACGCAKGMVRLFNPETLDYAGTLPRSHALGSDTANLSQPEPKNSESSPAIFPDA  327 (1080)
T ss_pred             hhhhhhhhhhccccceeeee--cceEEEeeccceeeecCcchhhhccccccccccccchhhcccccccccccCcccCCce
Confidence             100   0111223344444  45899999999999999877554443321                      0111223


Q ss_pred             CeEEEcCCCCEEEEEECCCcEEEEEecCCccceeecc--ccccccccc-cc--ccCCCCccccCCCCceeeeccCCceeE
Q 001415          622 PRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFE--NLAYDASRT-SE--NSKNGDVRSLADVKPRITEESNDKSKV  696 (1082)
Q Consensus       622 ~~~~~s~dg~~l~~~~~dg~i~iwd~~~~~~~~~~~~--~~~~~~~~~-~~--~~~~~~~~~s~~~~~l~~~~~d~~i~i  696 (1082)
                      .++.|++....|.+...|..++|||+++-.+.-+...  -|..-+... .+  ..........| ...+++++.|++|++
T Consensus       328 IA~~Fdet~~klscVYndhSlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp-~~cF~TCSsD~TIRl  406 (1080)
T KOG1408|consen  328 IACQFDETTDKLSCVYNDHSLYVWDVRDVNKVGKCSSMLYHSACIWDVENLPCNVHSPTAACLP-RGCFTTCSSDGTIRL  406 (1080)
T ss_pred             eEEEecCCCceEEEEEcCceEEEEeccccccccceeeeeeccceeeeeccccccccCcccccCC-ccceeEecCCCcEEE
Confidence            5788999999999999999999999987643322111  111100000 00  00000000011 112445555555555


Q ss_pred             EEecccCCCCccccccccCcccccceeEEEEccCCceeeecccCCeEEEeeccccccCCCCCcccccCccccCCCCccee
Q 001415          697 WKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMM  776 (1082)
Q Consensus       697 w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  776 (1082)
                      |++.........+..              .++.+-..++.  .|+...                     -+.|...+..-
T Consensus       407 W~l~~ctnn~vyrRN--------------ils~~l~ki~y--~d~~~q---------------------~~~d~~~~~fd  449 (1080)
T KOG1408|consen  407 WDLAFCTNNQVYRRN--------------ILSANLSKIPY--EDSTQQ---------------------IMHDASAGIFD  449 (1080)
T ss_pred             eecccccccceeecc--------------cchhhhhcCcc--ccCchh---------------------hhhhccCCccc
Confidence            554432111111000              00000000000  000000                     00011111100


Q ss_pred             ecccCCCCCCCCccEEEeecCCCeEEEee-CCeEEEEecCCCeeEEEECCCCCCeeEEEEecC--CCcEEEEEeCCCcEE
Q 001415          777 TNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQ--DNNIIAIGMDDSSIQ  853 (1082)
Q Consensus       777 ~~~~~~~~~~~~i~~l~~s~dg~~l~~~s-dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~--~~~~lasg~~dg~v~  853 (1082)
                      ......-.....++++++||+|++||+|. .|.++||++.+.+....+..|..+|.|+.||..  ..++||+++.|.-|.
T Consensus       450 ka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIH  529 (1080)
T KOG1408|consen  450 KALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIH  529 (1080)
T ss_pred             ccchhhcCcccceEEEEECCCcceecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEE
Confidence            00011112567799999999999999998 499999999999999999999999999999853  457999999999999


Q ss_pred             EEecccc-eeeeeecccccCEEEEEEeCCC--CEEEEEeCCCcEEEEEcCCcccccceeeeccCCCCCCCCCCcEEEEcC
Q 001415          854 IYNVRVD-EVKSKLKGHSKRITGLAFSHAL--NVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQ  930 (1082)
Q Consensus       854 iwd~~~~-~~~~~l~~h~~~V~~l~~s~d~--~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fsp  930 (1082)
                      |||+... .++.++.+|++.|+++.|.-.|  ..+++++.|..|.+ +....... .. +-...-+......+..++..|
T Consensus       530 V~Dv~rny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimF-r~~qk~~~-g~-~f~r~t~t~~ktTlYDm~Vdp  606 (1080)
T KOG1408|consen  530 VYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMF-RVNQKASS-GR-LFPRHTQTLSKTTLYDMAVDP  606 (1080)
T ss_pred             EEecccccchhhhhcccccceeEEEEeecCCceEEEeccCchhhhe-ehhccccC-ce-eccccccccccceEEEeeeCC
Confidence            9999754 6778999999999999998777  77999999997754 33321110 01 111111122225678999999


Q ss_pred             CCcEEEE-EecCeEEEEEccCcceeeeeccC-CCCcceeEEEEcCCCceEEEeecCCcEEEEecCCceeeeeeCCCeecC
Q 001415          931 DQIHFLV-VHETQLAIFETTKLECVKQWVPR-ESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLP 1008 (1082)
Q Consensus       931 dg~~l~~-~~d~~i~iwd~~~~~~~~~~~~~-~h~~~i~~l~~s~dg~~l~t~s~dg~v~vwd~~~~~~~~~~~~~~~~~ 1008 (1082)
                      ..+++++ +.|+.|+||++.+|+..+.|+.. +|.+....+...|.|-|||+.+.|.++.++|+.+|+++.+..      
T Consensus       607 ~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~------  680 (1080)
T KOG1408|consen  607 TSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMT------  680 (1080)
T ss_pred             CcceEEEEecccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhhhc------
Confidence            9999999 79999999999999999999843 566788899999999999999999999999999999998877      


Q ss_pred             CCCCCCCceeeEEEEeCCCCCeEEEEecCCcEEEEccCCCC
Q 001415         1009 AGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESE 1049 (1082)
Q Consensus      1009 ~gh~~~~v~~~~~~~~~~d~~~l~s~~~dg~v~vW~~~~~~ 1049 (1082)
                       ||+..   ++.+.|.+ |.+.|++.+.||+|+||.++...
T Consensus       681 -GHsE~---VTG~kF~n-DCkHlISvsgDgCIFvW~lp~~m  716 (1080)
T KOG1408|consen  681 -GHSEA---VTGVKFLN-DCKHLISVSGDGCIFVWKLPLTM  716 (1080)
T ss_pred             -Ccchh---eeeeeecc-cchhheeecCCceEEEEECchhH
Confidence             76333   44899999 68999999999999999998743

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=100.00  E-value=3.7e-40  Score=332.71  Aligned_cols=357  Identities=19%  Similarity=0.339  Sum_probs=281.6

Q ss_pred             CCCcceeeecCCCCCceEEEEecCCCeEEEEEcCCCcEEEEEccccceeeeeceeeeccCCCCcccccccccCCCCceeE
Q 001415          346 DLPKTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNR  425 (1082)
Q Consensus       346 ~~~~~~~~~~~h~~~v~~~~~spdg~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~  425 (1082)
                      ++|....+.+.|+++|.+++|+|-..-++++|+.|-+.++|++.........   .-++..+....-  .-...+..|++
T Consensus       166 ~I~~~~~kvl~~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~---q~~lrh~~~~~~--~s~~~nkdVT~  240 (524)
T KOG0273|consen  166 EIPSSKAKVLRHESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGST---QLVLRHCIREGG--KSVPSNKDVTS  240 (524)
T ss_pred             cccccceeeccCCCceEEEecCchhhhhhhccCCccceeeeeehhhccccch---hhhhhhhhhhhc--ccCCccCCcce
Confidence            4567777888899999999999988767999999999999998641110000   000000000000  01122458999


Q ss_pred             EEEecCCCeEEEEeCCCeEEEEEccCCceeeEEEEeeccccCeeEEEecCCCCceEEEEEeCCCcEEEEEccCCceeEEe
Q 001415          426 VIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIF  505 (1082)
Q Consensus       426 l~~spdg~~las~~~d~~v~iwd~~~~~~~~~~~~~~~h~~~V~~l~fs~dg~~~~l~s~s~d~~i~vwd~~~~~~~~~~  505 (1082)
                      ++|+.+|..||+|+.||.++||+..... +.   ++..|.++|.++.|+.+|.  +|++++.|+++.+||..+|.....+
T Consensus       241 L~Wn~~G~~LatG~~~G~~riw~~~G~l-~~---tl~~HkgPI~slKWnk~G~--yilS~~vD~ttilwd~~~g~~~q~f  314 (524)
T KOG0273|consen  241 LDWNNDGTLLATGSEDGEARIWNKDGNL-IS---TLGQHKGPIFSLKWNKKGT--YILSGGVDGTTILWDAHTGTVKQQF  314 (524)
T ss_pred             EEecCCCCeEEEeecCcEEEEEecCchh-hh---hhhccCCceEEEEEcCCCC--EEEeccCCccEEEEeccCceEEEee
Confidence            9999999999999999999999988754 33   6889999999999999999  8999999999999999999998888


Q ss_pred             ecCCcCeEEEeeeecCCceEEEEecCCCcEEEEecCCCCceeeecCCCCceEEEEEccCCCeeeecccccceeEEEecCC
Q 001415          506 EGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTT  585 (1082)
Q Consensus       506 ~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~i~~~~~~~~  585 (1082)
                      .-|..+-..+.|-..                                                                 
T Consensus       315 ~~~s~~~lDVdW~~~-----------------------------------------------------------------  329 (524)
T KOG0273|consen  315 EFHSAPALDVDWQSN-----------------------------------------------------------------  329 (524)
T ss_pred             eeccCCccceEEecC-----------------------------------------------------------------
Confidence            877766333333211                                                                 


Q ss_pred             CCEEEEEeCCCeEEEEECCCcceEEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEecCCccceeeccccccccc
Q 001415          586 KNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDAS  665 (1082)
Q Consensus       586 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~  665 (1082)
                       ..|++++.|+.|+|+.+....++.++.+|.+  +|.++.|+|.|.+|++++.|++++||..... .....+.       
T Consensus       330 -~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g--~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~-~~~~~l~-------  398 (524)
T KOG0273|consen  330 -DEFATSSTDGCIHVCKVGEDRPVKTFIGHHG--EVNALKWNPTGSLLASCSDDGTLKIWSMGQS-NSVHDLQ-------  398 (524)
T ss_pred             -ceEeecCCCceEEEEEecCCCcceeeecccC--ceEEEEECCCCceEEEecCCCeeEeeecCCC-cchhhhh-------
Confidence             1377777888888888888888888887655  8999999999999999999999999987554 1111111       


Q ss_pred             ccccccCCCCccccCCCCceeeeccCCceeEEEecccCCCCccccccccCcccccceeEEEEccCCceeeecccCCeEEE
Q 001415          666 RTSENSKNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLL  745 (1082)
Q Consensus       666 ~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~i  745 (1082)
                                                                         .|...|..+.|+|+|...           
T Consensus       399 ---------------------------------------------------~Hskei~t~~wsp~g~v~-----------  416 (524)
T KOG0273|consen  399 ---------------------------------------------------AHSKEIYTIKWSPTGPVT-----------  416 (524)
T ss_pred             ---------------------------------------------------hhccceeeEeecCCCCcc-----------
Confidence                                                               177788889999887410           


Q ss_pred             eeccccccCCCCCcccccCccccCCCCcceeecccCCCCCCCCccEEEeecCCCeEEEe-eCCeEEEEecCCCeeEEEEC
Q 001415          746 WKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSA-SGGKISLFNMMTFKTMATFM  824 (1082)
Q Consensus       746 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~l~~~-sdg~i~iwd~~~~~~~~~~~  824 (1082)
                                            |++                         .++..++++ .|++|++||+..+.++.+|.
T Consensus       417 ----------------------~n~-------------------------~~~~~l~sas~dstV~lwdv~~gv~i~~f~  449 (524)
T KOG0273|consen  417 ----------------------SNP-------------------------NMNLMLASASFDSTVKLWDVESGVPIHTLM  449 (524)
T ss_pred             ----------------------CCC-------------------------cCCceEEEeecCCeEEEEEccCCceeEeec
Confidence                                  010                         123345555 48999999999999999999


Q ss_pred             CCCCCeeEEEEecCCCcEEEEEeCCCcEEEEecccceeeeeecccccCEEEEEEeCCCCEEEEEeCCCcEEEEEcC
Q 001415          825 PPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSD  900 (1082)
Q Consensus       825 ~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~  900 (1082)
                      .|..+|.+++|+| +++++|+|+.||.|.+|+.++++.++...+. +.|..++|+.+|..|..+-.|+.+++-|+.
T Consensus       450 kH~~pVysvafS~-~g~ylAsGs~dg~V~iws~~~~~l~~s~~~~-~~Ifel~Wn~~G~kl~~~~sd~~vcvldlr  523 (524)
T KOG0273|consen  450 KHQEPVYSVAFSP-NGRYLASGSLDGCVHIWSTKTGKLVKSYQGT-GGIFELCWNAAGDKLGACASDGSVCVLDLR  523 (524)
T ss_pred             cCCCceEEEEecC-CCcEEEecCCCCeeEeccccchheeEeecCC-CeEEEEEEcCCCCEEEEEecCCCceEEEec
Confidence            9999999999999 9999999999999999999999999888754 569999999999999999999999998874

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=100.00  E-value=4e-38  Score=339.50  Aligned_cols=589  Identities=15%  Similarity=0.151  Sum_probs=435.1

Q ss_pred             EEEecCCCeEEEEEcCCCcEEEEEccccceeeeeceeeeccCCCCcccccccccCCCCceeEEEEecCCCeEEEEeCCCe
Q 001415          364 MDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHI  443 (1082)
Q Consensus       364 ~~~spdg~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d~~  443 (1082)
                      ..|..-|..++++.+.+.+..+||.+.-..+..                   -..+...|+|++=..|--|.|++   ..
T Consensus        39 ~~~~~~~~~~~vtt~vgksfqvYd~~kl~ll~v-------------------s~~lp~~I~alas~~~~vy~A~g---~~   96 (910)
T KOG1539|consen   39 FRVVALGSTFYVTTCVGKSFQVYDVNKLNLLFV-------------------SKPLPDKITALASDKDYVYVASG---NK   96 (910)
T ss_pred             eeeeecCceEEEEEecCceEEEEeccceEEEEe-------------------cCCCCCceEEEEecCceEEEecC---cE
Confidence            777777877899999999999999988777752                   34677899999865554444433   34


Q ss_pred             EEEEEccCCceeeEEEEeeccccCeeEEEecCCCCceEEEEEeCCCcEEEEEccCC-ce----eEEeecCCcCeEEEeee
Q 001415          444 VQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNG-AK----QYIFEGHEAPVYSVCPH  518 (1082)
Q Consensus       444 v~iwd~~~~~~~~~~~~~~~h~~~V~~l~fs~dg~~~~l~s~s~d~~i~vwd~~~~-~~----~~~~~~h~~~v~~~~~~  518 (1082)
                      |.+|.  .++.+..  .+.+|.+.|.-+.  +-|.  .++++..++.+.||+..++ ..    +..++...+.|+++. |
T Consensus        97 i~~~~--rgk~i~~--~~~~~~a~v~~l~--~fGe--~lia~d~~~~l~vw~~s~~~~e~~l~~~~~~~~~~~Ital~-H  167 (910)
T KOG1539|consen   97 IYAYA--RGKHIRH--TTLLHGAKVHLLL--PFGE--HLIAVDISNILFVWKTSSIQEELYLQSTFLKVEGDFITALL-H  167 (910)
T ss_pred             EEEEE--ccceEEE--EeccccceEEEEe--eecc--eEEEEEccCcEEEEEeccccccccccceeeeccCCceeeEe-c
Confidence            55554  4544443  5667877777665  3466  6899999999999998874 22    122232233377764 6


Q ss_pred             ecCCceEEEEecCCCcEEEEecCCCCceeeecCCCCceEEEEEccCCCeeeecccccceeEEEecCCCCEEEEEeCCCeE
Q 001415          519 HKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSI  598 (1082)
Q Consensus       519 ~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i  598 (1082)
                      |+.--+.++.|+.+|.+.+|++++++...++......|+++.-+|-=.                     .++.|..+|+|
T Consensus       168 P~TYLNKIvvGs~~G~lql~Nvrt~K~v~~f~~~~s~IT~ieqsPaLD---------------------VVaiG~~~G~V  226 (910)
T KOG1539|consen  168 PSTYLNKIVVGSSQGRLQLWNVRTGKVVYTFQEFFSRITAIEQSPALD---------------------VVAIGLENGTV  226 (910)
T ss_pred             chhheeeEEEeecCCcEEEEEeccCcEEEEecccccceeEeccCCcce---------------------EEEEeccCceE
Confidence            665556899999999999999999999999998888888776655432                     68889999999


Q ss_pred             EEEECCCcceEEEEecCCCCCCcCeEEEcCCCCEE-EEEECCCcEEEEEecCCccceeecccccccccccccccCCCCcc
Q 001415          599 KFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLL-AVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKNGDVR  677 (1082)
Q Consensus       599 ~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  677 (1082)
                      .+++++.++.+.+++...+  .|++++|..||..+ ++|+..|.+.+||+...+........|...+.  ...|      
T Consensus       227 iifNlK~dkil~sFk~d~g--~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~--~~~f------  296 (910)
T KOG1539|consen  227 IIFNLKFDKILMSFKQDWG--RVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVT--GATF------  296 (910)
T ss_pred             EEEEcccCcEEEEEEcccc--ceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcc--ccee------
Confidence            9999999999999987633  69999999999765 56666799999999877333333334433332  2333      


Q ss_pred             ccCCCCceeeeccCCceeEEEecccCCCCccccccccCcccccceeEEEEc-cCCceeeecccCCeEEEeeccccccCCC
Q 001415          678 SLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFT-NSGNAILALASNAIHLLWKWQRTERNSS  756 (1082)
Q Consensus       678 ~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s-~~~~~l~~~~~d~~i~iw~~~~~~~~~~  756 (1082)
                       .+....+++++.|+.+++|-.+.+...  .+.++.. .+|..+..++.|. .+|..+++++.|++++.+++.....+.+
T Consensus       297 -l~~epVl~ta~~DnSlk~~vfD~~dg~--pR~LR~R-~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~  372 (910)
T KOG1539|consen  297 -LPGEPVLVTAGADNSLKVWVFDSGDGV--PRLLRSR-GGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQE  372 (910)
T ss_pred             -cCCCceEeeccCCCceeEEEeeCCCCc--chheeec-cCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHh
Confidence             677778889999999998887754333  2222221 3589999999998 7889999999999999888765543322


Q ss_pred             CCcccccCccccCCCCcceeecccCCCCCCCCccEEEeecCC----CeEEEe--eCCeEEEEecCCCee-EEEEC-----
Q 001415          757 GKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKND----SYVMSA--SGGKISLFNMMTFKT-MATFM-----  824 (1082)
Q Consensus       757 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg----~~l~~~--sdg~i~iwd~~~~~~-~~~~~-----  824 (1082)
                      -..       ......++.....-...-.-.+|..+++...-    .-++++  ++..++.|+..+... ...+.     
T Consensus       373 l~~-------~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~  445 (910)
T KOG1539|consen  373 LGQ-------LHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFK  445 (910)
T ss_pred             hcc-------cccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCcccc
Confidence            111       01111111111000000023445566654321    123333  356799999987655 23333     


Q ss_pred             CCCCCeeEEEEecCCCcEEEEEeCCCcEEEEecccceeeeee---cccccCEEEEEEeCCCCEEEEEeCCCcEEEEEcCC
Q 001415          825 PPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKL---KGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDG  901 (1082)
Q Consensus       825 ~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l---~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~  901 (1082)
                      .....+++++.++ .|++.+.|+..|.|.+|++++|-....+   ..|.++|++++...-++.+++++.+|.+++||...
T Consensus       446 ~~~~~~~av~vs~-CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~  524 (910)
T KOG1539|consen  446 KDDINATAVCVSF-CGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKK  524 (910)
T ss_pred             ccCcceEEEEEec-cCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCC
Confidence            2346799999999 9999999999999999999999888888   58999999999988899999999999999999998


Q ss_pred             cccccceeeeccCCCCCCCCCCcEEEEcCCCcEEEE-EecCeEEEEEccCcceeeeeccCCCCcceeEEEEcCCCceEEE
Q 001415          902 WEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYA  980 (1082)
Q Consensus       902 ~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~dg~~l~t  980 (1082)
                      ....     ....    ....+..+..+.....+++ ..|-.|.++|..+.+.++.+.  +|...|++++|||||++|++
T Consensus       525 k~l~-----~~l~----l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~--gh~nritd~~FS~DgrWlis  593 (910)
T KOG1539|consen  525 KVLK-----KSLR----LGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFW--GHGNRITDMTFSPDGRWLIS  593 (910)
T ss_pred             ccee-----eeec----cCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhh--ccccceeeeEeCCCCcEEEE
Confidence            5421     1111    1145788888888888888 677899999999999999998  89999999999999999999


Q ss_pred             eecCCcEEEEecCCceeeeeeCCCeecCCCCCCCCceeeEEEEeCCCCCeEEEEecC-CcEEEEccCCCC
Q 001415          981 CFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSD-GGVHVFEPLESE 1049 (1082)
Q Consensus       981 ~s~dg~v~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~~~~~~~d~~~l~s~~~d-g~v~vW~~~~~~ 1049 (1082)
                      ++.|++|++||+.++.++-.+...           ..++++.|+|+ |++||+...| ..|.+|--.+--
T Consensus       594 asmD~tIr~wDlpt~~lID~~~vd-----------~~~~sls~SPn-gD~LAT~Hvd~~gIylWsNkslF  651 (910)
T KOG1539|consen  594 ASMDSTIRTWDLPTGTLIDGLLVD-----------SPCTSLSFSPN-GDFLATVHVDQNGIYLWSNKSLF  651 (910)
T ss_pred             eecCCcEEEEeccCcceeeeEecC-----------CcceeeEECCC-CCEEEEEEecCceEEEEEchhHh
Confidence            999999999999999999766511           34568999995 9999999999 789999766544

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=100.00  E-value=1.8e-39  Score=341.97  Aligned_cols=555  Identities=14%  Similarity=0.160  Sum_probs=371.3

Q ss_pred             CCCCceEEEEecCCCeEEEEEc--CCCcEEEEEccccceeeeeceeeeccCCCCcccccccccCCCCceeEEEEecCCCe
Q 001415          357 QGSSPMSMDFHPVQQTLLLVGT--NVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSL  434 (1082)
Q Consensus       357 h~~~v~~~~~spdg~~llasgs--~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~  434 (1082)
                      |..+++|++||++|+| +|+|-  ....++||++.....+.+                   +..|.-.|+|++|||.++|
T Consensus        77 sRk~~t~vAfS~~Gry-vatGEcG~~pa~kVw~la~h~vVAE-------------------fvdHKY~vtcvaFsp~~ky  136 (1080)
T KOG1408|consen   77 SRKPLTCVAFSQNGRY-VATGECGRTPASKVWSLAFHGVVAE-------------------FVDHKYNVTCVAFSPGNKY  136 (1080)
T ss_pred             cCcceeEEEEcCCCcE-EEecccCCCccceeeeeccccchhh-------------------hhhccccceeeeecCCCcE
Confidence            7889999999999996 99886  456699999988765553                   7789999999999999999


Q ss_pred             EEEEeC--CCeEEEEEccCCceeeEEEEeeccccCeeEEEecCCCCceEEEEEeCCCcEEEEEccCCceeEE--------
Q 001415          435 FGVAYS--RHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYI--------  504 (1082)
Q Consensus       435 las~~~--d~~v~iwd~~~~~~~~~~~~~~~h~~~V~~l~fs~dg~~~~l~s~s~d~~i~vwd~~~~~~~~~--------  504 (1082)
                      +++.+.  |-.|.+||+.......    -..-...|..++|+.||.  |+++.+ ...|++|.++.++....        
T Consensus       137 vvSVGsQHDMIVnv~dWr~N~~~a----snkiss~Vsav~fsEdgS--YfvT~g-nrHvk~wyl~~~~KykdpiPl~gRs  209 (1080)
T KOG1408|consen  137 VVSVGSQHDMIVNVNDWRVNSSGA----SNKISSVVSAVAFSEDGS--YFVTSG-NRHVKLWYLQIQSKYKDPIPLPGRS  209 (1080)
T ss_pred             EEeeccccceEEEhhhhhhccccc----ccccceeEEEEEEccCCc--eeeeee-eeeEEEEEeeccccccCCccccchh
Confidence            998765  5578889887543322    122345799999999999  788877 47899999886542110        


Q ss_pred             -----ee------------------------cC-----------------CcCeEEEeeeecCCceEEEEecCCCcEEEE
Q 001415          505 -----FE------------------------GH-----------------EAPVYSVCPHHKENIQFIFSTALDGKIKAW  538 (1082)
Q Consensus       505 -----~~------------------------~h-----------------~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw  538 (1082)
                           +.                        ||                 +..-.|++++    ..+|++|+.+|.|++|
T Consensus       210 ~~lg~lr~n~f~avaCg~gicAestfait~qGhLvEFSsRRLLDKWVqcRTTnAnCIcVs----~r~I~cgCa~g~vrlF  285 (1080)
T KOG1408|consen  210 YFLGNLRFNEFLAVACGVGICAESTFAITAQGHLVEFSSRRLLDKWVQCRTTNANCICVS----SRLIACGCAKGMVRLF  285 (1080)
T ss_pred             hhccccccchhhhhhhcCcccccceEEEecccceeeechhhhhhhhhhhhccccceeeee----cceEEEeeccceeeec
Confidence                 00                        11                 0111233332    2689999999999999


Q ss_pred             ecCCCCceeeecCCCCceEEEEEccCCCeeeecccc---cceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEEe-c
Q 001415          539 LYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRK---RSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSID-A  614 (1082)
Q Consensus       539 d~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~---~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~  614 (1082)
                      +..+..-.-++.....--..++--..-..+..+...   .....+.|++....+.+...|..|+|||++.-..+.... .
T Consensus       286 np~tL~y~~Tlpr~halg~d~a~~~q~~~~~s~~~~a~fPD~IA~~Fdet~~klscVYndhSlYvWDvrD~~kvgk~~s~  365 (1080)
T KOG1408|consen  286 NPETLDYAGTLPRSHALGSDTANLSQPEPKNSESSPAIFPDAIACQFDETTDKLSCVYNDHSLYVWDVRDVNKVGKCSSM  365 (1080)
T ss_pred             CcchhhhccccccccccccchhhcccccccccccCcccCCceeEEEecCCCceEEEEEcCceEEEEeccccccccceeee
Confidence            887755444333211100000000000111111111   123457788888999999999999999998644322110 0


Q ss_pred             CCCCCCcCeEE------------EcCCCCEEEEEECCCcEEEEEecCCccceeecccccccccccccccCCCCccccCCC
Q 001415          615 DGGLPASPRIR------------FNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKNGDVRSLADV  682 (1082)
Q Consensus       615 ~~~~~~i~~~~------------~s~dg~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~  682 (1082)
                      --|...|..+.            .-|.+ .+++++.|++|++|++..+. --..+........-..+.        ..|+
T Consensus       366 lyHS~ciW~Ve~~p~nv~~~~~aclp~~-cF~TCSsD~TIRlW~l~~ct-nn~vyrRNils~~l~ki~--------y~d~  435 (1080)
T KOG1408|consen  366 LYHSACIWDVENLPCNVHSPTAACLPRG-CFTTCSSDGTIRLWDLAFCT-NNQVYRRNILSANLSKIP--------YEDS  435 (1080)
T ss_pred             eeccceeeeeccccccccCcccccCCcc-ceeEecCCCcEEEeeccccc-ccceeecccchhhhhcCc--------cccC
Confidence            00111122222            22333 47899999999999987631 111111100000000000        0111


Q ss_pred             CceeeeccCCceeEEEecccCCCCccccccccCcccccceeEEEEccCCceeeecccCCeEEEeeccccccCCCCCcccc
Q 001415          683 KPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATAS  762 (1082)
Q Consensus       683 ~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~  762 (1082)
                      ..-+.  .|...-++|-...      ..     -.....+.+++++|+|++|+++...|.+++|++.....         
T Consensus       436 ~~q~~--~d~~~~~fdka~~------s~-----~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~---------  493 (1080)
T KOG1408|consen  436 TQQIM--HDASAGIFDKALV------ST-----CDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEY---------  493 (1080)
T ss_pred             chhhh--hhccCCcccccch------hh-----cCcccceEEEEECCCcceecccCccCceEEEEehhhhh---------
Confidence            10000  0001111111100      00     01456789999999999999999999999998864221         


Q ss_pred             cCccccCCCCcceeecccCCCCCCCCccEEEeec---CCCeEEEee-CCeEEEEecC-CCeeEEEECCCCCCeeEEEEec
Q 001415          763 VAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSK---NDSYVMSAS-GGKISLFNMM-TFKTMATFMPPPPAATFLAFHP  837 (1082)
Q Consensus       763 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~---dg~~l~~~s-dg~i~iwd~~-~~~~~~~~~~~~~~v~~l~~sp  837 (1082)
                                      ......|...|.|+.||.   ..++||+++ |.-|.|||+. +..+++++.+|...|+++.|.-
T Consensus       494 ----------------~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~  557 (1080)
T KOG1408|consen  494 ----------------TCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFAC  557 (1080)
T ss_pred             ----------------hhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccceeEEEEee
Confidence                            011223999999999984   356899998 5679999997 5677889999999999999987


Q ss_pred             CCC-cEEEEEeCCCcEEEEecccceeeeeecc-----cccCEEEEEEeCCCCEEEEEeCCCcEEEEEcCCcccccceeee
Q 001415          838 QDN-NIIAIGMDDSSIQIYNVRVDEVKSKLKG-----HSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQ  911 (1082)
Q Consensus       838 ~~~-~~lasg~~dg~v~iwd~~~~~~~~~l~~-----h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~  911 (1082)
                      .++ ..+++++.|..|.+--.+...-...+..     ....++.++..|..+++++++.|..|+||++.+++.     .+
T Consensus       558 ~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq-----~k  632 (1080)
T KOG1408|consen  558 NGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQ-----VK  632 (1080)
T ss_pred             cCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEecccceEEEeccccce-----ee
Confidence            332 5677888888776543332111112221     235689999999999999999999999999999765     33


Q ss_pred             ccCCCCCCCCCCcEEEEcCCCcEEEE-EecCeEEEEEccCcceeeeeccCCCCcceeEEEEcCCCceEEEeecCCcEEEE
Q 001415          912 IPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVF  990 (1082)
Q Consensus       912 ~~~~~~~~~~~v~~~~fspdg~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~dg~~l~t~s~dg~v~vw  990 (1082)
                      .+.+.....+....+...|.|.|+|+ +.|+++.++|..+|+|+.+..  ||+..|+.+.|++|-+.|++.+.||.|.||
T Consensus       633 ~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~--GHsE~VTG~kF~nDCkHlISvsgDgCIFvW  710 (1080)
T KOG1408|consen  633 SFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMT--GHSEAVTGVKFLNDCKHLISVSGDGCIFVW  710 (1080)
T ss_pred             eecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhhhc--CcchheeeeeecccchhheeecCCceEEEE
Confidence            33443333366788999999999999 799999999999999998877  999999999999999999999999999999


Q ss_pred             ecCCcee
Q 001415          991 SAANLKL  997 (1082)
Q Consensus       991 d~~~~~~  997 (1082)
                      .+...+.
T Consensus       711 ~lp~~mi  717 (1080)
T KOG1408|consen  711 KLPLTMI  717 (1080)
T ss_pred             ECchhHh
Confidence            9876443

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=8.1e-41  Score=333.20  Aligned_cols=285  Identities=18%  Similarity=0.264  Sum_probs=259.2

Q ss_pred             ccccCeeEEEecCCCCceEEEEEeCCCcEEEEEccCCceeEEeecCCcCeEEEeeeecCCceEEEEecCCCcEEEEecCC
Q 001415          463 AHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDN  542 (1082)
Q Consensus       463 ~h~~~V~~l~fs~dg~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~  542 (1082)
                      |.+.+|..+.||.|++  .|+|||.+|.++||+..+...+.+|.||...|.++.|+|..++..+++|+.||++++|++++
T Consensus       173 gd~rPis~~~fS~ds~--~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~  250 (459)
T KOG0272|consen  173 GDTRPISGCSFSRDSK--HLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQ  250 (459)
T ss_pred             cCCCcceeeEeecCCC--eEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCC
Confidence            5677999999999999  89999999999999999999999999999999999999986557899999999999999999


Q ss_pred             CCceeeecCCCCceEEEEEccCCCeeeecccccceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEEecCCCCCCcC
Q 001415          543 LGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASP  622 (1082)
Q Consensus       543 ~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~  622 (1082)
                      ...+..+.+|...|..++|.|+|+                     +|++++.|.+-++||+.++..+....+|..  .|.
T Consensus       251 e~~l~~l~gH~~RVs~VafHPsG~---------------------~L~TasfD~tWRlWD~~tk~ElL~QEGHs~--~v~  307 (459)
T KOG0272|consen  251 ETPLQDLEGHLARVSRVAFHPSGK---------------------FLGTASFDSTWRLWDLETKSELLLQEGHSK--GVF  307 (459)
T ss_pred             CcchhhhhcchhhheeeeecCCCc---------------------eeeecccccchhhcccccchhhHhhccccc--ccc
Confidence            888888888888887777777766                     899999999999999999988877776655  899


Q ss_pred             eEEEcCCCCEEEEEECCCcEEEEEecCCccceeecccccccccccccccCCCCccccCCCCceeeeccCCceeEEEeccc
Q 001415          623 RIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKNGDVRSLADVKPRITEESNDKSKVWKLTEL  702 (1082)
Q Consensus       623 ~~~~s~dg~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~iw~~~~~  702 (1082)
                      +++|.+||.++++|+.|..-+|||++++. .+..+                                             
T Consensus       308 ~iaf~~DGSL~~tGGlD~~~RvWDlRtgr-~im~L---------------------------------------------  341 (459)
T KOG0272|consen  308 SIAFQPDGSLAATGGLDSLGRVWDLRTGR-CIMFL---------------------------------------------  341 (459)
T ss_pred             eeEecCCCceeeccCccchhheeecccCc-EEEEe---------------------------------------------
Confidence            99999999999999999999999999882 11111                                             


Q ss_pred             CCCCccccccccCcccccceeEEEEccCCceeeecccCCeEEEeeccccccCCCCCcccccCccccCCCCcceeecccCC
Q 001415          703 SEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTD  782 (1082)
Q Consensus       703 ~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  782 (1082)
                                                                                                      
T Consensus       342 --------------------------------------------------------------------------------  341 (459)
T KOG0272|consen  342 --------------------------------------------------------------------------------  341 (459)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCCCccEEEeecCCCeEEEee-CCeEEEEecCCCeeEEEECCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEecccce
Q 001415          783 SNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDE  861 (1082)
Q Consensus       783 ~~~~~~i~~l~~s~dg~~l~~~s-dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~  861 (1082)
                      .+|..+|.+++|+|+|-.+|+|+ |++++|||++..+.+.++.+|.+.|+.|.|+|+.|.+|++++.|++++||...++.
T Consensus       342 ~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~  421 (459)
T KOG0272|consen  342 AGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWS  421 (459)
T ss_pred             cccccceeeEeECCCceEEeecCCCCcEEEeeecccccceecccccchhhheEecccCCeEEEEcccCcceeeecCCCcc
Confidence            12777788888889998999987 78999999998889999999999999999999889999999999999999999999


Q ss_pred             eeeeecccccCEEEEEEeCCCCEEEEEeCCCcEEEEE
Q 001415          862 VKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS  898 (1082)
Q Consensus       862 ~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd  898 (1082)
                      +++.+.||.+.|.++++++|+.+++|++.|.++++|.
T Consensus       422 ~~ksLaGHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~  458 (459)
T KOG0272|consen  422 PLKSLAGHEGKVISLDISPDSQAIATSSFDRTIKLWR  458 (459)
T ss_pred             cchhhcCCccceEEEEeccCCceEEEeccCceeeecc
Confidence            9999999999999999999999999999999999995

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=1.3e-40  Score=331.65  Aligned_cols=285  Identities=18%  Similarity=0.298  Sum_probs=264.7

Q ss_pred             ecCCCCCceEEEEecCCCeEEEEEcCCCcEEEEEccccceeeeeceeeeccCCCCcccccccccCCCCceeEEEEecC--
Q 001415          354 TLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPD--  431 (1082)
Q Consensus       354 ~~~h~~~v~~~~~spdg~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spd--  431 (1082)
                      .++.+.+|..+.||+|++ +||||+-+|.++||++.+...+.+                   +.+|+..|.++.|+|.  
T Consensus       171 Q~gd~rPis~~~fS~ds~-~laT~swsG~~kvW~~~~~~~~~~-------------------l~gH~~~v~~~~fhP~~~  230 (459)
T KOG0272|consen  171 QVGDTRPISGCSFSRDSK-HLATGSWSGLVKVWSVPQCNLLQT-------------------LRGHTSRVGAAVFHPVDS  230 (459)
T ss_pred             hccCCCcceeeEeecCCC-eEEEeecCCceeEeecCCcceeEE-------------------EeccccceeeEEEccCCC
Confidence            345778999999999999 599999999999999999877764                   8999999999999996  


Q ss_pred             CCeEEEEeCCCeEEEEEccCCceeeEEEEeeccccCeeEEEecCCCCceEEEEEeCCCcEEEEEccCCceeEEeecCCcC
Q 001415          432 GSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAP  511 (1082)
Q Consensus       432 g~~las~~~d~~v~iwd~~~~~~~~~~~~~~~h~~~V~~l~fs~dg~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~  511 (1082)
                      +..||+|+.||++++|++.+...+.   .+.+|...|..++|.|+|+  +|+|++.|.+-++||+.++..+....||...
T Consensus       231 ~~~lat~s~Dgtvklw~~~~e~~l~---~l~gH~~RVs~VafHPsG~--~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~  305 (459)
T KOG0272|consen  231 DLNLATASADGTVKLWKLSQETPLQ---DLEGHLARVSRVAFHPSGK--FLGTASFDSTWRLWDLETKSELLLQEGHSKG  305 (459)
T ss_pred             ccceeeeccCCceeeeccCCCcchh---hhhcchhhheeeeecCCCc--eeeecccccchhhcccccchhhHhhcccccc
Confidence            6799999999999999999987666   7999999999999999999  8999999999999999999999999999999


Q ss_pred             eEEEeeeecCCceEEEEecCCCcEEEEecCCCCceeeecCCCCceEEEEEccCCCeeeecccccceeEEEecCCCCEEEE
Q 001415          512 VYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLA  591 (1082)
Q Consensus       512 v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~i~~~~~~~~~~~l~~  591 (1082)
                      |.+++|++++  .++++|+.|..-+|||++++.+...+.+|..+|.++.|+|+|.                     .+++
T Consensus       306 v~~iaf~~DG--SL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy---------------------~lAT  362 (459)
T KOG0272|consen  306 VFSIAFQPDG--SLAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGY---------------------HLAT  362 (459)
T ss_pred             cceeEecCCC--ceeeccCccchhheeecccCcEEEEecccccceeeEeECCCce---------------------EEee
Confidence            9999997654  7999999999999999999999999999999999999988887                     8999


Q ss_pred             EeCCCeEEEEECCCcceEEEEecCCCCCCcCeEEEcC-CCCEEEEEECCCcEEEEEecCCccceeecccccccccccccc
Q 001415          592 AGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNK-DGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSEN  670 (1082)
Q Consensus       592 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~-dg~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  670 (1082)
                      |+.|++++|||++....+.++..|..  -|+.+.|+| .|.+|++++.|+++++|...+. .+.+.+.+|...+.  ++.
T Consensus       363 gs~Dnt~kVWDLR~r~~ly~ipAH~n--lVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~-~~~ksLaGHe~kV~--s~D  437 (459)
T KOG0272|consen  363 GSSDNTCKVWDLRMRSELYTIPAHSN--LVSQVKYSPQEGYFLVTASYDNTVKIWSTRTW-SPLKSLAGHEGKVI--SLD  437 (459)
T ss_pred             cCCCCcEEEeeecccccceecccccc--hhhheEecccCCeEEEEcccCcceeeecCCCc-ccchhhcCCccceE--EEE
Confidence            99999999999999999998887766  699999999 8899999999999999998888 89999999999887  677


Q ss_pred             cCCCCccccCCCCceeeeccCCceeEEE
Q 001415          671 SKNGDVRSLADVKPRITEESNDKSKVWK  698 (1082)
Q Consensus       671 ~~~~~~~~s~~~~~l~~~~~d~~i~iw~  698 (1082)
                      +       +++++.+++++.|.++++|.
T Consensus       438 i-------s~d~~~i~t~s~DRT~KLW~  458 (459)
T KOG0272|consen  438 I-------SPDSQAIATSSFDRTIKLWR  458 (459)
T ss_pred             e-------ccCCceEEEeccCceeeecc
Confidence            7       99999999999999999995

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=100.00  E-value=1.2e-38  Score=302.55  Aligned_cols=290  Identities=19%  Similarity=0.297  Sum_probs=255.4

Q ss_pred             eecCCCCCceEEEEecCCCeEEEEEcCCCcEEEEEccccceeeeeceeeeccCCCCcccccccccCCCCceeEEEEecCC
Q 001415          353 RTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDG  432 (1082)
Q Consensus       353 ~~~~h~~~v~~~~~spdg~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg  432 (1082)
                      .+.+|...|.++.|++|+++ ++++|.||.+.|||.-|....+-                   +.-....|..+||+|.|
T Consensus        50 ~LkGH~~Ki~~~~ws~Dsr~-ivSaSqDGklIvWDs~TtnK~ha-------------------ipl~s~WVMtCA~sPSg  109 (343)
T KOG0286|consen   50 TLKGHLNKIYAMDWSTDSRR-IVSASQDGKLIVWDSFTTNKVHA-------------------IPLPSSWVMTCAYSPSG  109 (343)
T ss_pred             EecccccceeeeEecCCcCe-EEeeccCCeEEEEEcccccceeE-------------------EecCceeEEEEEECCCC
Confidence            34459999999999999996 99999999999999988777663                   34456799999999999


Q ss_pred             CeEEEEeCCCeEEEEEccCC--c-eeeEEEEeeccccCeeEEEecCCCCceEEEEEeCCCcEEEEEccCCceeEEeecCC
Q 001415          433 SLFGVAYSRHIVQIYSYHGG--D-EVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHE  509 (1082)
Q Consensus       433 ~~las~~~d~~v~iwd~~~~--~-~~~~~~~~~~h~~~V~~l~fs~dg~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~  509 (1082)
                      +++|.|+-|+...||++.+.  + .+....++.+|++.+.|+.|.+|+.   |+|+|.|.+..+||+++|+.+..|.||.
T Consensus       110 ~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~~---ilT~SGD~TCalWDie~g~~~~~f~GH~  186 (343)
T KOG0286|consen  110 NFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDNH---ILTGSGDMTCALWDIETGQQTQVFHGHT  186 (343)
T ss_pred             CeEEecCcCceeEEEecccccccccceeeeeecCccceeEEEEEcCCCc---eEecCCCceEEEEEcccceEEEEecCCc
Confidence            99999999999999999865  2 2234447899999999999999876   8999999999999999999999999999


Q ss_pred             cCeEEEeeeecCCceEEEEecCCCcEEEEecCCCCceeeecCCCCceEEEEEccCCCeeeecccccceeEEEecCCCCEE
Q 001415          510 APVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRF  589 (1082)
Q Consensus       510 ~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~i~~~~~~~~~~~l  589 (1082)
                      +.|.++.+.|. +++.+++|+-|+..++||++.+.....+.+|...|.++.|.|+|.                     .|
T Consensus       187 gDV~slsl~p~-~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~---------------------af  244 (343)
T KOG0286|consen  187 GDVMSLSLSPS-DGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGD---------------------AF  244 (343)
T ss_pred             ccEEEEecCCC-CCCeEEecccccceeeeeccCcceeEeecccccccceEEEccCCC---------------------ee
Confidence            99999999875 568999999999999999999999999999999888888877776                     79


Q ss_pred             EEEeCCCeEEEEECCCcceEEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEecCCccceeeccccccccccccc
Q 001415          590 LAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSE  669 (1082)
Q Consensus       590 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  669 (1082)
                      ++|++|++.++||++..+.+..+.......+|++++||..|++|++|..|..+.+||.-.+ +....+.           
T Consensus       245 atGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~-e~vg~L~-----------  312 (343)
T KOG0286|consen  245 ATGSDDATCRLYDLRADQELAVYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKG-ERVGVLA-----------  312 (343)
T ss_pred             eecCCCceeEEEeecCCcEEeeeccCcccCCceeEEEcccccEEEeeecCCceeEeecccc-ceEEEee-----------
Confidence            9999999999999999999999988777788999999999999999999999999997655 2222221           


Q ss_pred             ccCCCCccccCCCCceeeeccCCceeEEEecccCCCCccccccccCcccccceeEEEEccCCceeeecccCCeEEEe
Q 001415          670 NSKNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLW  746 (1082)
Q Consensus       670 ~~~~~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iw  746 (1082)
                                                                     +|.++|.++..+|||..+++++.|..++||
T Consensus       313 -----------------------------------------------GHeNRvScl~~s~DG~av~TgSWDs~lriW  342 (343)
T KOG0286|consen  313 -----------------------------------------------GHENRVSCLGVSPDGMAVATGSWDSTLRIW  342 (343)
T ss_pred             -----------------------------------------------ccCCeeEEEEECCCCcEEEecchhHheeec
Confidence                                                           288889999999999999999999998888

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=100.00  E-value=4e-38  Score=340.04  Aligned_cols=277  Identities=18%  Similarity=0.282  Sum_probs=239.8

Q ss_pred             CCCCCCcceeeecC-CCCCceEEEEecCCCeEEEEEcCCCcEEEEEccccceeee---eceee---------eccCCCCc
Q 001415          343 TPEDLPKTVTRTLN-QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVL---RNFKV---------WDLGACSM  409 (1082)
Q Consensus       343 ~~~~~~~~~~~~~~-h~~~v~~~~~spdg~~llasgs~dg~i~iwd~~~~~~~~~---~~~~~---------~d~~~~~~  409 (1082)
                      ....+|..+..++. -...++|+.||+|++ ++|.|-.|..|++|.+...+....   ..+..         -++.....
T Consensus       362 ~~~~lpSic~YT~~nt~~~v~ca~fSddss-mlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~  440 (707)
T KOG0263|consen  362 GRNSLPSICMYTFHNTYQGVTCAEFSDDSS-MLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDS  440 (707)
T ss_pred             CCCCCCcEEEEEEEEcCCcceeEeecCCcc-hhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccC
Confidence            35566777777776 457899999999999 799999999999999985331110   00000         12222233


Q ss_pred             ccccccccCCCCceeEEEEecCCCeEEEEeCCCeEEEEEccCCceeeEEEEeeccccCeeEEEecCCCCceEEEEEeCCC
Q 001415          410 PLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDK  489 (1082)
Q Consensus       410 ~~~~~~~~~h~~~V~~l~~spdg~~las~~~d~~v~iwd~~~~~~~~~~~~~~~h~~~V~~l~fs~dg~~~~l~s~s~d~  489 (1082)
                      ......+.||.++|..+.|+||.++|++++.|++||+|.+.+..++.   ...||..+|+++.|+|-|-  |+||+|.|+
T Consensus       441 ~~~~~~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V---~y~GH~~PVwdV~F~P~Gy--YFatas~D~  515 (707)
T KOG0263|consen  441 SGTSRTLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLV---IYKGHLAPVWDVQFAPRGY--YFATASHDQ  515 (707)
T ss_pred             CceeEEeecCCCceeeeeecccccceeeccCCcceeeeecccceeEE---EecCCCcceeeEEecCCce--EEEecCCCc
Confidence            33444589999999999999999999999999999999999988766   6889999999999999998  899999999


Q ss_pred             cEEEEEccCCceeEEeecCCcCeEEEeeeecCCceEEEEecCCCcEEEEecCCCCceeeecCCCCceEEEEEccCCCeee
Q 001415          490 TIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTY  569 (1082)
Q Consensus       490 ~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~  569 (1082)
                      +.++|......+++.+.||.+.|.|+.|+|+.  .++++||.|.+||+||+.++..+..+.+|..+|.+++|||+|+   
T Consensus       516 tArLWs~d~~~PlRifaghlsDV~cv~FHPNs--~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr---  590 (707)
T KOG0263|consen  516 TARLWSTDHNKPLRIFAGHLSDVDCVSFHPNS--NYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGR---  590 (707)
T ss_pred             eeeeeecccCCchhhhcccccccceEEECCcc--cccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCc---
Confidence            99999999999999999999999999999876  6999999999999999999999999999999888888888887   


Q ss_pred             ecccccceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEecC
Q 001415          570 QGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSD  649 (1082)
Q Consensus       570 ~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~iwd~~~  649 (1082)
                                        +|++|++||.|.+||+.+++++..+..|.+  .|.++.|+.||..|++|+.|.+|++||+..
T Consensus       591 ------------------~LaSg~ed~~I~iWDl~~~~~v~~l~~Ht~--ti~SlsFS~dg~vLasgg~DnsV~lWD~~~  650 (707)
T KOG0263|consen  591 ------------------YLASGDEDGLIKIWDLANGSLVKQLKGHTG--TIYSLSFSRDGNVLASGGADNSVRLWDLTK  650 (707)
T ss_pred             ------------------eEeecccCCcEEEEEcCCCcchhhhhcccC--ceeEEEEecCCCEEEecCCCCeEEEEEchh
Confidence                              899999999999999999999999988844  799999999999999999999999999865


Q ss_pred             C
Q 001415          650 G  650 (1082)
Q Consensus       650 ~  650 (1082)
                      .
T Consensus       651 ~  651 (707)
T KOG0263|consen  651 V  651 (707)
T ss_pred             h
Confidence            4

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=2e-36  Score=315.36  Aligned_cols=478  Identities=17%  Similarity=0.252  Sum_probs=351.2

Q ss_pred             cCCCCCceEEEEecCCCeEEEEEcCCCcEEEEEccccceeeeeceeeeccCCCCcccccccccCCCCceeEEEEecCCCe
Q 001415          355 LNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSL  434 (1082)
Q Consensus       355 ~~h~~~v~~~~~spdg~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~  434 (1082)
                      ..|.+.|.++.|+|...+ +.++-..|.|.|||.++...+...                   .-..-+|.+..|-+-.++
T Consensus        10 ~~rSdRVKsVd~HPtePw-~la~LynG~V~IWnyetqtmVksf-------------------eV~~~PvRa~kfiaRknW   69 (794)
T KOG0276|consen   10 QSRSDRVKSVDFHPTEPW-ILAALYNGDVQIWNYETQTMVKSF-------------------EVSEVPVRAAKFIARKNW   69 (794)
T ss_pred             hccCCceeeeecCCCCce-EEEeeecCeeEEEecccceeeeee-------------------eecccchhhheeeeccce
Confidence            348999999999999998 566778999999999998888752                   233458999999999999


Q ss_pred             EEEEeCCCeEEEEEccCCceeeEEEEeeccccCeeEEEecCCCCceEEEEEeCCCcEEEEEccCC-ceeEEeecCCcCeE
Q 001415          435 FGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNG-AKQYIFEGHEAPVY  513 (1082)
Q Consensus       435 las~~~d~~v~iwd~~~~~~~~~~~~~~~h~~~V~~l~fs~dg~~~~l~s~s~d~~i~vwd~~~~-~~~~~~~~h~~~v~  513 (1082)
                      +++|+.|..|+||+..+++.+.   .+..|.+-|.+++..|...  +++|+|+|-+|++||.+.+ .+.+++.||..-|.
T Consensus        70 iv~GsDD~~IrVfnynt~ekV~---~FeAH~DyIR~iavHPt~P--~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVM  144 (794)
T KOG0276|consen   70 IVTGSDDMQIRVFNYNTGEKVK---TFEAHSDYIRSIAVHPTLP--YVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVM  144 (794)
T ss_pred             EEEecCCceEEEEecccceeeE---EeeccccceeeeeecCCCC--eEEecCCccEEEEeeccCceeeeeEEcCcceEEE
Confidence            9999999999999999998777   8999999999999999999  8999999999999999865 67789999999999


Q ss_pred             EEeeeecCCceEEEEecCCCcEEEEecCCCCceeeecCCCCceEEEEEccCCCeeeecccccceeEEEecCCCCEEEEEe
Q 001415          514 SVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAG  593 (1082)
Q Consensus       514 ~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~i~~~~~~~~~~~l~~~~  593 (1082)
                      +++|.|... +.+++++.|++|++|.+....+..++.+|...|.++.+-+.|.                   ..++++|+
T Consensus       145 qv~fnPkD~-ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gd-------------------kpylIsga  204 (794)
T KOG0276|consen  145 QVAFNPKDP-NTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGD-------------------KPYLISGA  204 (794)
T ss_pred             EEEecCCCc-cceeeeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCC-------------------cceEEecC
Confidence            999998655 7899999999999999999999999999999999998877663                   35899999


Q ss_pred             CCCeEEEEECCCcceEEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEecCCccceeecccccccccccccccCC
Q 001415          594 DDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKN  673 (1082)
Q Consensus       594 ~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  673 (1082)
                      .|.+|+|||..+..|++++.+|.+  .|..+.|+|.-.++++|+.||+++||+..+- ++...+.-....+.  +++   
T Consensus       205 DD~tiKvWDyQtk~CV~TLeGHt~--Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty-~lE~tLn~gleRvW--~I~---  276 (794)
T KOG0276|consen  205 DDLTIKVWDYQTKSCVQTLEGHTN--NVSFVFFHPELPIIISGSEDGTVRIWNSKTY-KLEKTLNYGLERVW--CIA---  276 (794)
T ss_pred             CCceEEEeecchHHHHHHhhcccc--cceEEEecCCCcEEEEecCCccEEEecCcce-ehhhhhhcCCceEE--EEe---
Confidence            999999999999999999998877  7999999999999999999999999998765 33333322211111  111   


Q ss_pred             CCccccCCCCceeeeccCCceeEEEecccCCCCccccccccCcccccceeEEEEccCCceeeecccC-CeEEEeeccccc
Q 001415          674 GDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASN-AIHLLWKWQRTE  752 (1082)
Q Consensus       674 ~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d-~~i~iw~~~~~~  752 (1082)
                          ..+.+..+++|..+|.+.+ .+.                   .....+..++.|+.+.+.... ..+.+-      
T Consensus       277 ----~~k~~~~i~vG~Deg~i~v-~lg-------------------reeP~vsMd~~gKIiwa~~~ei~~~~~k------  326 (794)
T KOG0276|consen  277 ----AHKGDGKIAVGFDEGSVTV-KLG-------------------REEPAVSMDSNGKIIWAVHSEIQAVNLK------  326 (794)
T ss_pred             ----ecCCCCeEEEeccCCcEEE-Ecc-------------------CCCCceeecCCccEEEEcCceeeeeece------
Confidence                1345555666666555443 221                   122335555566544444332 111111      


Q ss_pred             cCCCCCcccccCccccCCCCcceeecccCCCC-CCCCccEEEeecCCCeEEEeeCCeEEEEecCCCeeEEEECCCCCCee
Q 001415          753 RNSSGKATASVAPQLWQPPSGIMMTNDVTDSN-PEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAAT  831 (1082)
Q Consensus       753 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~l~~s~dg~~l~~~sdg~i~iwd~~~~~~~~~~~~~~~~v~  831 (1082)
                            ......    +...|+.+....+..+ -.-....++-||+|+++++++||...||..-.     -....-+.-.
T Consensus       327 ------s~~~~~----ev~DgErL~LsvKeLgs~eiyPq~L~hsPNGrfV~VcgdGEyiIyTala-----~RnK~fG~~~  391 (794)
T KOG0276|consen  327 ------SVGAQK----EVTDGERLPLSVKELGSVEIYPQTLAHSPNGRFVVVCGDGEYIIYTALA-----LRNKAFGSGL  391 (794)
T ss_pred             ------eccCcc----cccCCccccchhhhccccccchHHhccCCCCcEEEEecCccEEEEEeee-----hhhcccccce
Confidence                  111100    3334443333222211 11223467889999999999999999886321     1122445677


Q ss_pred             EEEEecCCCcEEEEEeCCCcEEEEecccceeeeeecccccCEEEEEEeCCCCEEEEEeCCCcEEEEEcCCcccccceeee
Q 001415          832 FLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQ  911 (1082)
Q Consensus       832 ~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~  911 (1082)
                      ...|++ |....|+-..++.|.++  ++.+....++..-.    ...--.|.+|...+ ++.+++||.++++..     +
T Consensus       392 eFvw~~-dsne~avRes~~~vki~--knfke~ksi~~~~~----~e~i~gg~Llg~~s-s~~~~fydW~~~~lV-----r  458 (794)
T KOG0276|consen  392 EFVWAA-DSNEFAVRESNGNVKIF--KNFKEHKSIRPDMS----AEGIFGGPLLGVRS-SDFLCFYDWESGELV-----R  458 (794)
T ss_pred             eEEEcC-CCCeEEEEecCCceEEE--ecceeccccccccc----eeeecCCceEEEEe-CCeEEEEEcccceEE-----E
Confidence            889999 77788888888999998  56665555542211    11122355555555 555999999996543     2


Q ss_pred             ccCCCCCCCCCCcEEEEcCCCcEEEEEecCeEEEEEcc
Q 001415          912 IPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETT  949 (1082)
Q Consensus       912 ~~~~~~~~~~~v~~~~fspdg~~l~~~~d~~i~iwd~~  949 (1082)
                      ...      .....+.|+.+|.+++.+.|...+++..+
T Consensus       459 rI~------v~~k~v~w~d~g~lVai~~d~Sfyil~~n  490 (794)
T KOG0276|consen  459 RIE------VTSKHVYWSDNGELVAIAGDDSFYILKFN  490 (794)
T ss_pred             EEe------eccceeEEecCCCEEEEEecCceeEEEec
Confidence            222      12367999999999999888877766553

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=100.00  E-value=4.1e-36  Score=317.48  Aligned_cols=644  Identities=14%  Similarity=0.150  Sum_probs=419.2

Q ss_pred             ceeeecCCCCCceEEEEecCCC---eEEEEEcCCCcEEEEEccccceeeeeceeeeccCCCCcccccccccCCCCceeEE
Q 001415          350 TVTRTLNQGSSPMSMDFHPVQQ---TLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRV  426 (1082)
Q Consensus       350 ~~~~~~~h~~~v~~~~~spdg~---~llasgs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l  426 (1082)
                      ....+-+|..+|+|+.|-|+.+   + +++|+.|+.|++|.++....+...                 .+.+|.  +.++
T Consensus        46 i~t~l~GH~a~VnC~~~l~~s~~~a~-~vsG~sD~~v~lW~l~~~~~~~i~-----------------~~~g~~--~~~~  105 (764)
T KOG1063|consen   46 IVTTLDGHVARVNCVHWLPTSEIVAE-MVSGDSDGRVILWKLRDEYLIKIY-----------------TIQGHC--KECV  105 (764)
T ss_pred             eEEeccCCccceEEEEEcccccccce-EEEccCCCcEEEEEEeehheEEEE-----------------eecCcc--eeEE
Confidence            3345556999999999999887   4 889999999999999844433321                 244554  4455


Q ss_pred             EEecCCCeEEEEeCCCeEEEEEccCCceee-EEEEeeccccCeeEEEecCCCCceEEEEEeCCCcEEEEEccCC--ceeE
Q 001415          427 IWSPDGSLFGVAYSRHIVQIYSYHGGDEVR-QHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNG--AKQY  503 (1082)
Q Consensus       427 ~~spdg~~las~~~d~~v~iwd~~~~~~~~-~~~~~~~h~~~V~~l~fs~dg~~~~l~s~s~d~~i~vwd~~~~--~~~~  503 (1082)
                      ++........+.+.|+++.+||.+..+... ....+.--..--.|+++.++.+..+++.|+.+..|.++.-.++  +.+.
T Consensus       106 cv~a~~~~~~~~~ad~~v~vw~~~~~e~~~~~~~rf~~k~~ipLcL~~~~~~~~~lla~Ggs~~~v~~~s~~~d~f~~v~  185 (764)
T KOG1063|consen  106 CVVARSSVMTCKAADGTVSVWDKQQDEVFLLAVLRFEIKEAIPLCLAALKNNKTFLLACGGSKFVVDLYSSSADSFARVA  185 (764)
T ss_pred             EEEeeeeEEEeeccCceEEEeecCCCceeeehheehhhhhHhhHHHhhhccCCcEEEEecCcceEEEEeccCCcceeEEE
Confidence            555444444444789999999996554211 1111222222345777788666557888888888888875544  4566


Q ss_pred             EeecCCcCeEEEeeeecCC-ceEEEEecCCCcEEEEecCCCCcee------eecC-CCCceEE----EEEccCCCeeeec
Q 001415          504 IFEGHEAPVYSVCPHHKEN-IQFIFSTALDGKIKAWLYDNLGSRV------DYEA-PGRWCTT----MAYSADGTRTYQG  571 (1082)
Q Consensus       504 ~~~~h~~~v~~~~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~------~~~~-~~~~v~~----~~~s~d~~~~~~~  571 (1082)
                      .+.||.+.|.+++|..... .-+|++++.|..||+|.+.-.....      .... ...++..    +.+.-.-..++.|
T Consensus       186 el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~G  265 (764)
T KOG1063|consen  186 ELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMG  265 (764)
T ss_pred             EeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcC
Confidence            8899999999999976554 5689999999999999875433111      0000 0011111    1111111133445


Q ss_pred             ccccceeEEEecCCCCEEEEEeCCCeEEEEECCCc--ceEEEEe--cC-CCCCCcCeEEEcCCCCEEEEEECCCcEEEEE
Q 001415          572 FRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSV--QLLTSID--AD-GGLPASPRIRFNKDGCLLAVSTNDNGIKILA  646 (1082)
Q Consensus       572 ~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~--~~~~~~~--~~-~~~~~i~~~~~s~dg~~l~~~~~dg~i~iwd  646 (1082)
                      |.+ -+.++.|+|.+..|++++.|.++.+|...+.  --+....  .. +.........|+|+++.+++-+..|..++|.
T Consensus       266 HeD-WV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWk  344 (764)
T KOG1063|consen  266 HED-WVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFHLWK  344 (764)
T ss_pred             ccc-ceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcEEEEe
Confidence            554 7888889999989999999999999987654  2222222  11 1223467899999999999999999999998


Q ss_pred             ecCC--ccceeecccccccccccccccCCCCccccCCCCceeeeccCCceeEEEecccCCCCccccccccCcccccceeE
Q 001415          647 TSDG--IRLLRTFENLAYDASRTSENSKNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISR  724 (1082)
Q Consensus       647 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~  724 (1082)
                      ..+.  ......+.+|...+.  .+.|       .|.|+++++.+.|.+-++|-.-..+..  -..+.-| +.|...+++
T Consensus       345 t~d~~~w~~~~~iSGH~~~V~--dv~W-------~psGeflLsvs~DQTTRlFa~wg~q~~--wHEiaRP-QiHGyDl~c  412 (764)
T KOG1063|consen  345 TKDKTFWTQEPVISGHVDGVK--DVDW-------DPSGEFLLSVSLDQTTRLFARWGRQQE--WHEIARP-QIHGYDLTC  412 (764)
T ss_pred             ccCccceeeccccccccccce--eeee-------cCCCCEEEEeccccceeeecccccccc--eeeeccc-cccccccee
Confidence            3332  234455677777666  5666       999999999999999999876521111  1111111 238888999


Q ss_pred             EEEccCCceeeecccCCeEEEeeccccccCCCCCcccccCccccCCCCcc-eeecccCCCCCCCCccEEEeecCCCeE-E
Q 001415          725 LIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGI-MMTNDVTDSNPEEAVPCFALSKNDSYV-M  802 (1082)
Q Consensus       725 ~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~l~~s~dg~~l-~  802 (1082)
                      ++|-+....+++++....+++|+....-...            ...-.+. .....  .......|..+-.|...-+. .
T Consensus       413 ~~~vn~~~~FVSgAdEKVlRvF~aPk~fv~~------------l~~i~g~~~~~~~--~~p~gA~VpaLGLSnKa~~~~e  478 (764)
T KOG1063|consen  413 LSFVNEDLQFVSGADEKVLRVFEAPKSFVKS------------LMAICGKCFKGSD--ELPDGANVPALGLSNKAFFPGE  478 (764)
T ss_pred             eehccCCceeeecccceeeeeecCcHHHHHH------------HHHHhCccccCch--hcccccccccccccCCCCcccc
Confidence            9999876678898899999999865421000            0000000 00000  00011112222222111110 0


Q ss_pred             EeeCCe-------------EEEEecC---------CCeeEEEECCCCCCeeEEEEecCCCcEEEEEeCC-----CcEEEE
Q 001415          803 SASGGK-------------ISLFNMM---------TFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDD-----SSIQIY  855 (1082)
Q Consensus       803 ~~sdg~-------------i~iwd~~---------~~~~~~~~~~~~~~v~~l~~sp~~~~~lasg~~d-----g~v~iw  855 (1082)
                      +-+.+.             ..+....         ....+..+.+|..+|.+++.+| +++++|+++..     ..|++|
T Consensus       479 ~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~-~gnliASaCKS~~~ehAvI~lw  557 (764)
T KOG1063|consen  479 TNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISP-TGNLIASACKSSLKEHAVIRLW  557 (764)
T ss_pred             cccccccceeeecccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecC-CCCEEeehhhhCCccceEEEEE
Confidence            000000             0000000         0123355778999999999999 99999999864     479999


Q ss_pred             ecccceeeeeecccccCEEEEEEeCCCCEEEEEeCCCcEEEEEcCCcccccceeeeccCCCCCCCCCCcEEEEcCCCcEE
Q 001415          856 NVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHF  935 (1082)
Q Consensus       856 d~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l  935 (1082)
                      +..+...+..+.+|+-.|+.|+|||||++|++++.|+++.+|..........+ ....+.|.   .-|-++.|+||++++
T Consensus       558 ~t~~W~~~~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~-fa~~k~Ht---RIIWdcsW~pde~~F  633 (764)
T KOG1063|consen  558 NTANWLQVQELEGHSLTVTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFR-FACLKAHT---RIIWDCSWSPDEKYF  633 (764)
T ss_pred             eccchhhhheecccceEEEEEEECCCCcEEEEeecCceEEeeeeecccchhhh-hccccccc---eEEEEcccCccccee
Confidence            99999988999999999999999999999999999999999998665443333 22244444   457889999999999


Q ss_pred             EE-EecCeEEEEEccCc--ceeeeeccCCCCcceeEEEEcCC-----CceEEEeecCCcEEEEecCCceeeee---eCCC
Q 001415          936 LV-VHETQLAIFETTKL--ECVKQWVPRESSAPITHATFSCD-----SQLVYACFLDATVCVFSAANLKLRCR---INPS 1004 (1082)
Q Consensus       936 ~~-~~d~~i~iwd~~~~--~~~~~~~~~~h~~~i~~l~~s~d-----g~~l~t~s~dg~v~vwd~~~~~~~~~---~~~~ 1004 (1082)
                      ++ +.|+.|++|.....  +.+..+....+...|++++|.|-     +..++.|-+.|.|.||....-.....   +...
T Consensus       634 aTaSRDK~VkVW~~~~~~d~~i~~~a~~~~~~aVTAv~~~~~~~~e~~~~vavGle~GeI~l~~~~~~~~~~~~~~~~~~  713 (764)
T KOG1063|consen  634 ATASRDKKVKVWEEPDLRDKYISRFACLKFSLAVTAVAYLPVDHNEKGDVVAVGLEKGEIVLWRRKREHRQVTVGTFNLD  713 (764)
T ss_pred             EEecCCceEEEEeccCchhhhhhhhchhccCCceeeEEeeccccccccceEEEEecccEEEEEecccccccccceeeeec
Confidence            99 68999999999888  77766666678899999999872     33678888999999999652111110   0000


Q ss_pred             eecCCCCCCCCceeeEEEEeCCC---------CCeEEEEecCCcEEEEccC
Q 001415         1005 AYLPAGVSSSNVHPLVIAAHPQE---------PNEFALGLSDGGVHVFEPL 1046 (1082)
Q Consensus      1005 ~~~~~gh~~~~v~~~~~~~~~~d---------~~~l~s~~~dg~v~vW~~~ 1046 (1082)
                      .-++ .+.++...+..+.|.|..         ...|++|++|.+++++++.
T Consensus       714 ~~l~-~~~~~~~aV~rl~w~p~~~~~~~~~~~~l~la~~g~D~~vri~nv~  763 (764)
T KOG1063|consen  714 TRLC-ATIGPDSAVNRLLWRPTCSDDWVEDKEWLNLAVGGDDESVRIFNVD  763 (764)
T ss_pred             cccc-cccChHHhhheeEeccccccccccccceeEEeeecccceeEEeecc
Confidence            0000 111222234467888641         2237999999999999864

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=100.00  E-value=2e-35  Score=318.72  Aligned_cols=546  Identities=14%  Similarity=0.190  Sum_probs=413.1

Q ss_pred             CCCCCceEEEEecCCCeEEEEEcCCCcEEEEEccccceeeeeceeeeccCCCCcccccccccCCCCceeEEEEecCCCeE
Q 001415          356 NQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLF  435 (1082)
Q Consensus       356 ~h~~~v~~~~~spdg~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l  435 (1082)
                      .+.+.|+|++=..+--   .+++ ...|.+|.-  |+.+..                  +..+|.+.|.-+.  |=|.++
T Consensus        74 ~lp~~I~alas~~~~v---y~A~-g~~i~~~~r--gk~i~~------------------~~~~~~a~v~~l~--~fGe~l  127 (910)
T KOG1539|consen   74 PLPDKITALASDKDYV---YVAS-GNKIYAYAR--GKHIRH------------------TTLLHGAKVHLLL--PFGEHL  127 (910)
T ss_pred             CCCCceEEEEecCceE---EEec-CcEEEEEEc--cceEEE------------------EeccccceEEEEe--eecceE
Confidence            3789999988766543   2322 345666643  333321                  3567777777665  468899


Q ss_pred             EEEeCCCeEEEEEccCC-ceeeEEEEe-eccccCeeEEEecCCCCceEEEEEeCCCcEEEEEccCCceeEEeecCCcCeE
Q 001415          436 GVAYSRHIVQIYSYHGG-DEVRQHLEI-DAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVY  513 (1082)
Q Consensus       436 as~~~d~~v~iwd~~~~-~~~~~~~~~-~~h~~~V~~l~fs~dg~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~  513 (1082)
                      .++..++.+.||+..++ .......++ +...+.|+++.- |.-----++.|+.+|.+++|++++++.++++.++...|+
T Consensus       128 ia~d~~~~l~vw~~s~~~~e~~l~~~~~~~~~~~Ital~H-P~TYLNKIvvGs~~G~lql~Nvrt~K~v~~f~~~~s~IT  206 (910)
T KOG1539|consen  128 IAVDISNILFVWKTSSIQEELYLQSTFLKVEGDFITALLH-PSTYLNKIVVGSSQGRLQLWNVRTGKVVYTFQEFFSRIT  206 (910)
T ss_pred             EEEEccCcEEEEEeccccccccccceeeeccCCceeeEec-chhheeeEEEeecCCcEEEEEeccCcEEEEeccccccee
Confidence            99999999999999885 221110122 222233776653 432111378899999999999999999999999999999


Q ss_pred             EEeeeecCCceEEEEecCCCcEEEEecCCCCceeeecCCCCceEEEEEccCCCeeeecccccceeEEEecCCCCEEEEEe
Q 001415          514 SVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAG  593 (1082)
Q Consensus       514 ~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~i~~~~~~~~~~~l~~~~  593 (1082)
                      ++.-+|.-  ..++.|..+|+|.+++++..+....+....+.|++++|..||..                    .+++++
T Consensus       207 ~ieqsPaL--DVVaiG~~~G~ViifNlK~dkil~sFk~d~g~VtslSFrtDG~p--------------------~las~~  264 (910)
T KOG1539|consen  207 AIEQSPAL--DVVAIGLENGTVIIFNLKFDKILMSFKQDWGRVTSLSFRTDGNP--------------------LLASGR  264 (910)
T ss_pred             EeccCCcc--eEEEEeccCceEEEEEcccCcEEEEEEccccceeEEEeccCCCe--------------------eEEecc
Confidence            99865554  58999999999999999999999888888889999999988873                    577788


Q ss_pred             CCCeEEEEECCCcceEEEEe-cCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEecCC---ccceeeccccccccccccc
Q 001415          594 DDFSIKFWDMDSVQLLTSID-ADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG---IRLLRTFENLAYDASRTSE  669 (1082)
Q Consensus       594 ~dg~i~iwd~~~~~~~~~~~-~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~iwd~~~~---~~~~~~~~~~~~~~~~~~~  669 (1082)
                      ..|.+.+||++..+.+.... .|  ...+....|-|....+++++.|+.+++|-..++   .+.++.-.+|..+..  ++
T Consensus       265 ~~G~m~~wDLe~kkl~~v~~nah--~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~--~i  340 (910)
T KOG1539|consen  265 SNGDMAFWDLEKKKLINVTRNAH--YGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPS--CI  340 (910)
T ss_pred             CCceEEEEEcCCCeeeeeeeccc--cCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCch--he
Confidence            88999999999888877665 34  336888999999999999999999998866644   244555667777665  55


Q ss_pred             ccCCCCccccCCCCceeeeccCCceeEEEecccCCCCcccccccc-----------CcccccceeEEEEccCC-----ce
Q 001415          670 NSKNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLP-----------ENLRATKISRLIFTNSG-----NA  733 (1082)
Q Consensus       670 ~~~~~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~-----------~~~~~~~i~~~~~s~~~-----~~  733 (1082)
                      .|      ....|..+.+++.|++.+.+++..............+           ....-.+|..+++....     +.
T Consensus       341 rf------y~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv  414 (910)
T KOG1539|consen  341 RF------YGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNV  414 (910)
T ss_pred             ee------eccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcce
Confidence            55      1467889999999999998887653322222211000           01123456566655432     34


Q ss_pred             eeecccCCeEEEeeccccccCCCCCcccccCccccCCCCcceeecccCCCCCCCCccEEEeecCCCeEEEee-CCeEEEE
Q 001415          734 ILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLF  812 (1082)
Q Consensus       734 l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~l~~~s-dg~i~iw  812 (1082)
                      +.+.-.+...+.|++....                   .|...-...........+++++.++.|++.+.|. .|.|-+|
T Consensus       415 ~~~h~~~~~~~tW~~~n~~-------------------~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~f  475 (910)
T KOG1539|consen  415 ITAHKGKRSAYTWNFRNKT-------------------SGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRF  475 (910)
T ss_pred             eEEecCcceEEEEeccCcc-------------------cccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEE
Confidence            4455556778888776322                   1111111000111346789999999999999996 6999999


Q ss_pred             ecCCCeeEEEE---CCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEecccceeeeeecccccCEEEEEEeCCCCEEEEEe
Q 001415          813 NMMTFKTMATF---MPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSG  889 (1082)
Q Consensus       813 d~~~~~~~~~~---~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s  889 (1082)
                      |+++|-....+   ..|..+|+.++... -++.+++++.+|.+.+||..+..++..++ -...++++..+.....++.+.
T Consensus       476 NmQSGi~r~sf~~~~ah~~~V~gla~D~-~n~~~vsa~~~Gilkfw~f~~k~l~~~l~-l~~~~~~iv~hr~s~l~a~~~  553 (910)
T KOG1539|consen  476 NMQSGIHRKSFGDSPAHKGEVTGLAVDG-TNRLLVSAGADGILKFWDFKKKVLKKSLR-LGSSITGIVYHRVSDLLAIAL  553 (910)
T ss_pred             EcccCeeecccccCccccCceeEEEecC-CCceEEEccCcceEEEEecCCcceeeeec-cCCCcceeeeeehhhhhhhhc
Confidence            99999998888   58999999999998 78899999999999999999988887776 345688899999999999999


Q ss_pred             CCCcEEEEEcCCcccccceeeeccCCCCCCCCCCcEEEEcCCCcEEEE-EecCeEEEEEccCcceeeeeccCCCCcceeE
Q 001415          890 ADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFETTKLECVKQWVPRESSAPITH  968 (1082)
Q Consensus       890 ~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~h~~~i~~  968 (1082)
                      .|-.|+++|+.+     .++.+.+.||.   ..|++++|||||++|++ +.|++|++||+.++.++-.+..   ..+.++
T Consensus       554 ddf~I~vvD~~t-----~kvvR~f~gh~---nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~~v---d~~~~s  622 (910)
T KOG1539|consen  554 DDFSIRVVDVVT-----RKVVREFWGHG---NRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGLLV---DSPCTS  622 (910)
T ss_pred             CceeEEEEEchh-----hhhhHHhhccc---cceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeEec---CCccee
Confidence            999999999998     45677788888   78999999999999999 7899999999999999988865   568999


Q ss_pred             EEEcCCCceEEEeecC-CcEEEEec
Q 001415          969 ATFSCDSQLVYACFLD-ATVCVFSA  992 (1082)
Q Consensus       969 l~~s~dg~~l~t~s~d-g~v~vwd~  992 (1082)
                      +.|||+|.+|||+..| .-|++|.=
T Consensus       623 ls~SPngD~LAT~Hvd~~gIylWsN  647 (910)
T KOG1539|consen  623 LSFSPNGDFLATVHVDQNGIYLWSN  647 (910)
T ss_pred             eEECCCCCEEEEEEecCceEEEEEc
Confidence            9999999999999988 66999953

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=100.00  E-value=6.8e-37  Score=289.09  Aligned_cols=295  Identities=20%  Similarity=0.269  Sum_probs=244.8

Q ss_pred             eecCCCCCceEEEEecCCCeEEEEEcCCCcEEEEEccccceeeeeceeeeccCCCCcccccccccCCCCceeEEEEecCC
Q 001415          353 RTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDG  432 (1082)
Q Consensus       353 ~~~~h~~~v~~~~~spdg~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg  432 (1082)
                      .+.+|++.|+.++..+.+..++.+++.|.++.+|++.......-.              ....+.||...|..++.++||
T Consensus        10 tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~--------------~~r~~~GHsH~v~dv~~s~dg   75 (315)
T KOG0279|consen   10 TLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGV--------------PVRRLTGHSHFVSDVVLSSDG   75 (315)
T ss_pred             eecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCc--------------eeeeeeccceEecceEEccCC
Confidence            344599999999999998889999999999999998654222111              111388999999999999999


Q ss_pred             CeEEEEeCCCeEEEEEccCCceeeEEEEeeccccCeeEEEecCCCCceEEEEEeCCCcEEEEEccCCceeEEeecC--Cc
Q 001415          433 SLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGH--EA  510 (1082)
Q Consensus       433 ~~las~~~d~~v~iwd~~~~~~~~~~~~~~~h~~~V~~l~fs~dg~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h--~~  510 (1082)
                      ++.++++.|+++++||+.+++..+   .|.||...|.+++|++|++  .+++|+.|++|++|++..+. ..++..+  .+
T Consensus        76 ~~alS~swD~~lrlWDl~~g~~t~---~f~GH~~dVlsva~s~dn~--qivSGSrDkTiklwnt~g~c-k~t~~~~~~~~  149 (315)
T KOG0279|consen   76 NFALSASWDGTLRLWDLATGESTR---RFVGHTKDVLSVAFSTDNR--QIVSGSRDKTIKLWNTLGVC-KYTIHEDSHRE  149 (315)
T ss_pred             ceEEeccccceEEEEEecCCcEEE---EEEecCCceEEEEecCCCc--eeecCCCcceeeeeeecccE-EEEEecCCCcC
Confidence            999999999999999999997665   7899999999999999999  59999999999999976544 4444433  78


Q ss_pred             CeEEEeeeecCCceEEEEecCCCcEEEEecCCCCceeeecCCCCceEEEEEccCCCeeeecccccceeEEEecCCCCEEE
Q 001415          511 PVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFL  590 (1082)
Q Consensus       511 ~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~i~~~~~~~~~~~l~  590 (1082)
                      .|.+++|+|+.+..+|++++.|++|++||+++.+....+.+|.+.++.+++||||.                     ..+
T Consensus       150 WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGs---------------------lca  208 (315)
T KOG0279|consen  150 WVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGS---------------------LCA  208 (315)
T ss_pred             cEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCC---------------------EEe
Confidence            99999999998778999999999999999999888888889999888888888887                     788


Q ss_pred             EEeCCCeEEEEECCCcceEEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEecCCccceeecccccc-------c
Q 001415          591 AAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAY-------D  663 (1082)
Q Consensus       591 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-------~  663 (1082)
                      +|+.||.+.+||++.++.+..+...   ..|.+++|+|+..+|+.+. +..|+|||+.++ ..+..+.....       .
T Consensus       209 sGgkdg~~~LwdL~~~k~lysl~a~---~~v~sl~fspnrywL~~at-~~sIkIwdl~~~-~~v~~l~~d~~g~s~~~~~  283 (315)
T KOG0279|consen  209 SGGKDGEAMLWDLNEGKNLYSLEAF---DIVNSLCFSPNRYWLCAAT-ATSIKIWDLESK-AVVEELKLDGIGPSSKAGD  283 (315)
T ss_pred             cCCCCceEEEEEccCCceeEeccCC---CeEeeEEecCCceeEeecc-CCceEEEeccch-hhhhhccccccccccccCC
Confidence            8999999999999999998888643   3699999999887776655 456999999887 34333322111       2


Q ss_pred             ccccccccCCCCccccCCCCceeeeccCCceeEEEec
Q 001415          664 ASRTSENSKNGDVRSLADVKPRITEESNDKSKVWKLT  700 (1082)
Q Consensus       664 ~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~iw~~~  700 (1082)
                      +...+++|       +++|..|+.|..|+.|++|.+.
T Consensus       284 ~~clslaw-------s~dG~tLf~g~td~~irv~qv~  313 (315)
T KOG0279|consen  284 PICLSLAW-------SADGQTLFAGYTDNVIRVWQVA  313 (315)
T ss_pred             cEEEEEEE-------cCCCcEEEeeecCCcEEEEEee
Confidence            22224555       9999999999999999999874

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=100.00  E-value=1.4e-35  Score=281.81  Aligned_cols=294  Identities=16%  Similarity=0.228  Sum_probs=246.6

Q ss_pred             eeeecccccceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEE
Q 001415          567 RTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILA  646 (1082)
Q Consensus       567 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~iwd  646 (1082)
                      +++.||.. .|.++.|++|.+++++++.||.+.|||.-+...+..+.....  .|..++|+|.|+++++|+-|+...||+
T Consensus        49 r~LkGH~~-Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~--WVMtCA~sPSg~~VAcGGLdN~Csiy~  125 (343)
T KOG0286|consen   49 RTLKGHLN-KIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSS--WVMTCAYSPSGNFVACGGLDNKCSIYP  125 (343)
T ss_pred             EEeccccc-ceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCce--eEEEEEECCCCCeEEecCcCceeEEEe
Confidence            44444433 556666666666999999999999999999888888876654  899999999999999999999999998


Q ss_pred             ecCCccceeecccccccccccccccCCCCccccCCCCceeeeccCCceeEEEecccCCCCccccccccCcccccceeEEE
Q 001415          647 TSDGIRLLRTFENLAYDASRTSENSKNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLI  726 (1082)
Q Consensus       647 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  726 (1082)
                      +.+....                                      +.+++                              
T Consensus       126 ls~~d~~--------------------------------------g~~~v------------------------------  137 (343)
T KOG0286|consen  126 LSTRDAE--------------------------------------GNVRV------------------------------  137 (343)
T ss_pred             ccccccc--------------------------------------cccee------------------------------
Confidence            7643100                                      00000                              


Q ss_pred             EccCCceeeecccCCeEEEeeccccccCCCCCcccccCccccCCCCcceeecccCCCCCCCCccEEEeecCCCeEEEeeC
Q 001415          727 FTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASG  806 (1082)
Q Consensus       727 ~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~l~~~sd  806 (1082)
                                                                        ...+.  +|...+.|+.|-+|+.+|...+|
T Consensus       138 --------------------------------------------------~r~l~--gHtgylScC~f~dD~~ilT~SGD  165 (343)
T KOG0286|consen  138 --------------------------------------------------SRELA--GHTGYLSCCRFLDDNHILTGSGD  165 (343)
T ss_pred             --------------------------------------------------eeeec--CccceeEEEEEcCCCceEecCCC
Confidence                                                              00011  28888899999887766655568


Q ss_pred             CeEEEEecCCCeeEEEECCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEecccceeeeeecccccCEEEEEEeCCCCEEE
Q 001415          807 GKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLV  886 (1082)
Q Consensus       807 g~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~  886 (1082)
                      .+..+||+++++.+..|.+|.+.|.+++++|.+++.+++|+-|+..++||++.+.+++.|.+|.+.|+++.|.|+|.-++
T Consensus       166 ~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afa  245 (343)
T KOG0286|consen  166 MTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFA  245 (343)
T ss_pred             ceEEEEEcccceEEEEecCCcccEEEEecCCCCCCeEEecccccceeeeeccCcceeEeecccccccceEEEccCCCeee
Confidence            99999999999999999999999999999998899999999999999999999999999999999999999999999999


Q ss_pred             EEeCCCcEEEEEcCCcccccceeeeccCCCCCCCCCCcEEEEcCCCcEEEE-EecCeEEEEEccCcceeeeeccCCCCcc
Q 001415          887 SSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFETTKLECVKQWVPRESSAP  965 (1082)
Q Consensus       887 s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~h~~~  965 (1082)
                      +|++|++.++||++..+..     ..+. +.....+|++++||-.|++|.+ ..|..+.+||.-.++.+..+.  +|..+
T Consensus       246 tGSDD~tcRlyDlRaD~~~-----a~ys-~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~--GHeNR  317 (343)
T KOG0286|consen  246 TGSDDATCRLYDLRADQEL-----AVYS-HDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLA--GHENR  317 (343)
T ss_pred             ecCCCceeEEEeecCCcEE-----eeec-cCcccCCceeEEEcccccEEEeeecCCceeEeeccccceEEEee--ccCCe
Confidence            9999999999999985432     1111 3333478999999999999999 578999999999999888887  99999


Q ss_pred             eeEEEEcCCCceEEEeecCCcEEEEe
Q 001415          966 ITHATFSCDSQLVYACFLDATVCVFS  991 (1082)
Q Consensus       966 i~~l~~s~dg~~l~t~s~dg~v~vwd  991 (1082)
                      |+++..+|||.-+++||.|.+++||.
T Consensus       318 vScl~~s~DG~av~TgSWDs~lriW~  343 (343)
T KOG0286|consen  318 VSCLGVSPDGMAVATGSWDSTLRIWA  343 (343)
T ss_pred             eEEEEECCCCcEEEecchhHheeecC
Confidence            99999999999999999999999994

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=4.2e-34  Score=309.05  Aligned_cols=489  Identities=17%  Similarity=0.259  Sum_probs=344.0

Q ss_pred             CCCCceEEEEecCCCeEEEEEcCCCcEEEEEccccceeeeeceeeeccCCCCcccccccccCCCCceeEEEEecCCCeEE
Q 001415          357 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFG  436 (1082)
Q Consensus       357 h~~~v~~~~~spdg~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la  436 (1082)
                      .+..|..++|+|...+ +.++-..|.|.+||+.-+.++.+                   +.+|.++|..++|.|++.+++
T Consensus         8 kSsRvKglsFHP~rPw-ILtslHsG~IQlWDYRM~tli~r-------------------FdeHdGpVRgv~FH~~qplFV   67 (1202)
T KOG0292|consen    8 KSSRVKGLSFHPKRPW-ILTSLHSGVIQLWDYRMGTLIDR-------------------FDEHDGPVRGVDFHPTQPLFV   67 (1202)
T ss_pred             ccccccceecCCCCCE-EEEeecCceeeeehhhhhhHHhh-------------------hhccCCccceeeecCCCCeEE
Confidence            5678999999999997 77888999999999999998875                   889999999999999999999


Q ss_pred             EEeCCCeEEEEEccCCceeeEEEEeeccccCeeEEEecCCCCceEEEEEeCCCcEEEEEccCCceeEEeecCCcCeEEEe
Q 001415          437 VAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVC  516 (1082)
Q Consensus       437 s~~~d~~v~iwd~~~~~~~~~~~~~~~h~~~V~~l~fs~dg~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~  516 (1082)
                      +|+.|..|++|+.++.+++.   ++.||-+-|..+.|.+.-.  +++|+|+|.+|+||++.+++++..++||..-|.|..
T Consensus        68 SGGDDykIkVWnYk~rrclf---tL~GHlDYVRt~~FHheyP--WIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAq  142 (1202)
T KOG0292|consen   68 SGGDDYKIKVWNYKTRRCLF---TLLGHLDYVRTVFFHHEYP--WILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQ  142 (1202)
T ss_pred             ecCCccEEEEEecccceehh---hhccccceeEEeeccCCCc--eEEEccCCCeEEEEeccCCceEEEEecCceEEEeec
Confidence            99999999999999988776   8999999999999999888  899999999999999999999999999999999999


Q ss_pred             eeecCCceEEEEecCCCcEEEEecCCCCceeeecCC-CCceEE------EEEccCC--CeeeecccccceeEEEecCCCC
Q 001415          517 PHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAP-GRWCTT------MAYSADG--TRTYQGFRKRSLGVVQFDTTKN  587 (1082)
Q Consensus       517 ~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~v~~------~~~s~d~--~~~~~~~~~~~i~~~~~~~~~~  587 (1082)
                      |+|..|  .++++|.|.+||+||+...+......+. ......      +--.+|.  +.++.|| +..+.-++|+|.-.
T Consensus       143 FhptED--lIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGH-DRGVNwaAfhpTlp  219 (1202)
T KOG0292|consen  143 FHPTED--LIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGH-DRGVNWAAFHPTLP  219 (1202)
T ss_pred             cCCccc--eEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeeccc-ccccceEEecCCcc
Confidence            999874  8999999999999999764443322210 000000      0001111  1445555 44788899999999


Q ss_pred             EEEEEeCCCeEEEEECCCcceEEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEecCCccceeeccccccccccc
Q 001415          588 RFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRT  667 (1082)
Q Consensus       588 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  667 (1082)
                      .+++|+.|..|++|.+..-+....-...+|...|.++-|+|...++++.+.|++|++||+... ..++.++.        
T Consensus       220 liVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kR-t~v~tfrr--------  290 (1202)
T KOG0292|consen  220 LIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKR-TSVQTFRR--------  290 (1202)
T ss_pred             eEEecCCcceeeEEEeccccceeehhhhcccCCcceEEecCccceeEecCCCccEEEEecccc-cceeeeec--------
Confidence            999999999999999987665444444455668999999999999999999999999998755 22322221        


Q ss_pred             ccccCCCCccccCCCCceeeeccCCceeEEEecccCCCCccccccccCcccccceeEEEEccCCceeeecccCCeEEEee
Q 001415          668 SENSKNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWK  747 (1082)
Q Consensus       668 ~~~~~~~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iw~  747 (1082)
                                                                        ..++...++.+|..+.+++ +.|+.+.+|.
T Consensus       291 --------------------------------------------------endRFW~laahP~lNLfAA-gHDsGm~VFk  319 (1202)
T KOG0292|consen  291 --------------------------------------------------ENDRFWILAAHPELNLFAA-GHDSGMIVFK  319 (1202)
T ss_pred             --------------------------------------------------cCCeEEEEEecCCcceeee-ecCCceEEEE
Confidence                                                              3445667888888885555 4554555564


Q ss_pred             ccccccCCCCCcccccCccccCCCCcceeecccCCCCCCCCccEEEeecCCCeEEEeeCCeEEEEecCCCeeE--EEECC
Q 001415          748 WQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTM--ATFMP  825 (1082)
Q Consensus       748 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~l~~~sdg~i~iwd~~~~~~~--~~~~~  825 (1082)
                      ++                                   ...++.++    ++..|....+..|+-+|+.+.+..  ..++.
T Consensus       320 le-----------------------------------RErpa~~v----~~n~LfYvkd~~i~~~d~~t~~d~~v~~lr~  360 (1202)
T KOG0292|consen  320 LE-----------------------------------RERPAYAV----NGNGLFYVKDRFIRSYDLRTQKDTAVASLRR  360 (1202)
T ss_pred             Ec-----------------------------------ccCceEEE----cCCEEEEEccceEEeeeccccccceeEeccC
Confidence            43                                   12233332    344555555888999999875433  33443


Q ss_pred             C---CCCeeEEEEecCCCcEEEEEeCC-CcEEEEeccccee-----eeeecccccCEEEEEEeCCCCEEEEEeCCCcEEE
Q 001415          826 P---PPAATFLAFHPQDNNIIAIGMDD-SSIQIYNVRVDEV-----KSKLKGHSKRITGLAFSHALNVLVSSGADSQLCV  896 (1082)
Q Consensus       826 ~---~~~v~~l~~sp~~~~~lasg~~d-g~v~iwd~~~~~~-----~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~v  896 (1082)
                      .   ..++.++.++|..+..+++...| |.-.++.+.....     ....++  ....++-.. .+++.+---.+..+.+
T Consensus       361 ~g~~~~~~~smsYNpae~~vlics~~~n~~y~L~~ipk~~~~~~~~~~~~k~--tG~~a~fva-rNrfavl~k~~~~v~i  437 (1202)
T KOG0292|consen  361 PGTLWQPPRSLSYNPAENAVLICSNLDNGEYELVQIPKDSDGVSDGKDVKKG--TGEGALFVA-RNRFAVLDKSNEQVVI  437 (1202)
T ss_pred             CCcccCCcceeeeccccCeEEEEeccCCCeEEEEEecCcccccCCchhhhcC--CCCceEEEE-ecceEEEEecCcceEE
Confidence            3   35688999999555555554444 3444454432210     001111  112222222 2222222222555666


Q ss_pred             EEcCCcccccceeeeccCCCCCCCCCCcEEEEcCCCcEEEEEecCeEEEEEccCcceeeeeccCCCCcceeEEEEcCCCc
Q 001415          897 WSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQ  976 (1082)
Q Consensus       897 wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~dg~  976 (1082)
                      =++.....   +.+..+       ..+..+-+..+|.+|+. +...|.+||+.....+..+.    -..|.-++||+|.+
T Consensus       438 k~l~N~vt---kkl~~~-------~~~~~IF~ag~g~lll~-~~~~v~lfdvQq~~~~~si~----~s~vkyvvws~dm~  502 (1202)
T KOG0292|consen  438 KNLKNKVT---KKLLLP-------ESTDDIFYAGTGNLLLR-SPDSVTLFDVQQKKKVGSIK----VSKVKYVVWSNDMS  502 (1202)
T ss_pred             ecccchhh---hcccCc-------ccccceeeccCccEEEE-cCCeEEEEEeecceEEEEEe----cCceeEEEEcCccc
Confidence            66655211   111111       23455666666766554 45678999998888888776    46788999999988


Q ss_pred             eEEEeecCCcEEEEe
Q 001415          977 LVYACFLDATVCVFS  991 (1082)
Q Consensus       977 ~l~t~s~dg~v~vwd  991 (1082)
                      ++|.-+ ..+|.|.+
T Consensus       503 ~vAll~-Kh~i~i~~  516 (1202)
T KOG0292|consen  503 RVALLS-KHTITIAD  516 (1202)
T ss_pred             hhhhcc-cceEEEEe
Confidence            766554 34555554

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=100.00  E-value=1.4e-34  Score=305.87  Aligned_cols=545  Identities=18%  Similarity=0.226  Sum_probs=372.1

Q ss_pred             EEEecCCCeEEEEEcCCCcEEEEEccccceeeeeceeeeccCCCCcccccccccCCCCceeEEEEecCCC---eEEEEeC
Q 001415          364 MDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGS---LFGVAYS  440 (1082)
Q Consensus       364 ~~~spdg~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~---~las~~~  440 (1082)
                      ..|.|.+  ++|.| ....|.+||..+.....                   .+.||.++|+|+.|-|+.+   ++++|+.
T Consensus        20 ~sw~~~~--~vafG-a~~~Iav~dp~k~~i~t-------------------~l~GH~a~VnC~~~l~~s~~~a~~vsG~s   77 (764)
T KOG1063|consen   20 SSWGPGG--LVAFG-AGPAIAVADPEKILIVT-------------------TLDGHVARVNCVHWLPTSEIVAEMVSGDS   77 (764)
T ss_pred             ccccccc--eEEec-CCceEEEeCcccceeEE-------------------eccCCccceEEEEEcccccccceEEEccC
Confidence            3456666  35554 46789999987663333                   3899999999999999888   8999999


Q ss_pred             CCeEEEEEccCCceeeEEEEeeccccCeeEEEecCCCCceEEEEEeCCCcEEEEEccCCc--eeEEeecCCcCeEEEeee
Q 001415          441 RHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGA--KQYIFEGHEAPVYSVCPH  518 (1082)
Q Consensus       441 d~~v~iwd~~~~~~~~~~~~~~~h~~~V~~l~fs~dg~~~~l~s~s~d~~i~vwd~~~~~--~~~~~~~h~~~v~~~~~~  518 (1082)
                      |+.|++|.+... .+....++.+|...+.|+  ...-.  ...+.+.|+++.+||.+..+  +...+.-..+.+..+|+ 
T Consensus        78 D~~v~lW~l~~~-~~~~i~~~~g~~~~~~cv--~a~~~--~~~~~~ad~~v~vw~~~~~e~~~~~~~rf~~k~~ipLcL-  151 (764)
T KOG1063|consen   78 DGRVILWKLRDE-YLIKIYTIQGHCKECVCV--VARSS--VMTCKAADGTVSVWDKQQDEVFLLAVLRFEIKEAIPLCL-  151 (764)
T ss_pred             CCcEEEEEEeeh-heEEEEeecCcceeEEEE--Eeeee--EEEeeccCceEEEeecCCCceeeehheehhhhhHhhHHH-
Confidence            999999999943 344555777776665554  33322  22223689999999974444  11111111111111111 


Q ss_pred             ecCCceEEEEecCCCcEEEEecCCCCceeeecCCCCceEEEEEccCCCeeeecccccceeEEEecCCCCEEEEEeCCCeE
Q 001415          519 HKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSI  598 (1082)
Q Consensus       519 ~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i  598 (1082)
                                                               ++.++...                   -.++.|+.+..|
T Consensus       152 -----------------------------------------~~~~~~~~-------------------~lla~Ggs~~~v  171 (764)
T KOG1063|consen  152 -----------------------------------------AALKNNKT-------------------FLLACGGSKFVV  171 (764)
T ss_pred             -----------------------------------------hhhccCCc-------------------EEEEecCcceEE
Confidence                                                     11111000                   024445556666


Q ss_pred             EEEECCCcceEEEEecCCCCCCcCeEEEcCCC---CEEEEEECCCcEEEEEecCCc--------------------cce-
Q 001415          599 KFWDMDSVQLLTSIDADGGLPASPRIRFNKDG---CLLAVSTNDNGIKILATSDGI--------------------RLL-  654 (1082)
Q Consensus       599 ~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~dg---~~l~~~~~dg~i~iwd~~~~~--------------------~~~-  654 (1082)
                      .++.-.+.+........+|...|.+++|...+   -+|++++.|..||||.+.-+.                    ... 
T Consensus       172 ~~~s~~~d~f~~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~  251 (764)
T KOG1063|consen  172 DLYSSSADSFARVAELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILE  251 (764)
T ss_pred             EEeccCCcceeEEEEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeee
Confidence            66654444433333334445589999998744   488999999999999875332                    000 


Q ss_pred             ---------eecccccccccccccccCCCCccccCCCCceeeeccCCceeEEEecccCCCCccccccccC-cccccceeE
Q 001415          655 ---------RTFENLAYDASRTSENSKNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPE-NLRATKISR  724 (1082)
Q Consensus       655 ---------~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~-~~~~~~i~~  724 (1082)
                               ..+.+|...+.  ++.|       .|.+..|++++.|.++.+|...+....- ....++.. .+......+
T Consensus       252 ~i~~~is~eall~GHeDWV~--sv~W-------~p~~~~LLSASaDksmiiW~pd~~tGiW-v~~vRlGe~gg~a~GF~g  321 (764)
T KOG1063|consen  252 EIQYRISFEALLMGHEDWVY--SVWW-------HPEGLDLLSASADKSMIIWKPDENTGIW-VDVVRLGEVGGSAGGFWG  321 (764)
T ss_pred             eEEEEEehhhhhcCcccceE--EEEE-------ccchhhheecccCcceEEEecCCccceE-EEEEEeecccccccceee
Confidence                     11224554444  4555       8889999999999999999977532111 11112221 124456788


Q ss_pred             EEEccCCceeeecccCCeEEEeeccccccCCCCCcccccCccccCCCCcceeecccCCCCCCCCccEEEeecCCCeEEEe
Q 001415          725 LIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSA  804 (1082)
Q Consensus       725 ~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~l~~~  804 (1082)
                      ..|+|+++.+++-+..|..++|....              ...|...        ....+|...|..++|+|.|.+|.+.
T Consensus       322 ~lw~~n~~~ii~~g~~Gg~hlWkt~d--------------~~~w~~~--------~~iSGH~~~V~dv~W~psGeflLsv  379 (764)
T KOG1063|consen  322 GLWSPNSNVIIAHGRTGGFHLWKTKD--------------KTFWTQE--------PVISGHVDGVKDVDWDPSGEFLLSV  379 (764)
T ss_pred             EEEcCCCCEEEEecccCcEEEEeccC--------------ccceeec--------cccccccccceeeeecCCCCEEEEe
Confidence            99999999999999999999996111              1223322        1123599999999999999999998


Q ss_pred             e-CCeEEEEecC----CCeeEEEECCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEecc---------------------
Q 001415          805 S-GGKISLFNMM----TFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVR---------------------  858 (1082)
Q Consensus       805 s-dg~i~iwd~~----~~~~~~~~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~---------------------  858 (1082)
                      + |-+-|+|-.-    +...+..-+.|....+|++|-+ ....+++|.+...+|+|+..                     
T Consensus       380 s~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn-~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~  458 (764)
T KOG1063|consen  380 SLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVN-EDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDEL  458 (764)
T ss_pred             ccccceeeecccccccceeeecccccccccceeeehcc-CCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhc
Confidence            8 6677776543    1233444556788899999998 67788889888999999751                     


Q ss_pred             ----------------------cce---------------------------------eeeeecccccCEEEEEEeCCCC
Q 001415          859 ----------------------VDE---------------------------------VKSKLKGHSKRITGLAFSHALN  883 (1082)
Q Consensus       859 ----------------------~~~---------------------------------~~~~l~~h~~~V~~l~~s~d~~  883 (1082)
                                            +|.                                 .+.++.||.-.|++++.+|+|+
T Consensus       459 p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gn  538 (764)
T KOG1063|consen  459 PDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGN  538 (764)
T ss_pred             ccccccccccccCCCCcccccccccccceeeecccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCC
Confidence                                  010                                 1122457888999999999999


Q ss_pred             EEEEEeCCC-----cEEEEEcCCcccccceeeeccCCCCCCCCCCcEEEEcCCCcEEEE-EecCeEEEEEccCcceeeee
Q 001415          884 VLVSSGADS-----QLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFETTKLECVKQW  957 (1082)
Q Consensus       884 ~l~s~s~Dg-----~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~-~~d~~i~iwd~~~~~~~~~~  957 (1082)
                      ++||++...     .|++|+..+...     .....+|.   ..|+.++|||||++|++ +.|+++.+|....... ..+
T Consensus       539 liASaCKS~~~ehAvI~lw~t~~W~~-----~~~L~~Hs---LTVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~-~e~  609 (764)
T KOG1063|consen  539 LIASACKSSLKEHAVIRLWNTANWLQ-----VQELEGHS---LTVTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIK-DEF  609 (764)
T ss_pred             EEeehhhhCCccceEEEEEeccchhh-----hheecccc---eEEEEEEECCCCcEEEEeecCceEEeeeeecccc-hhh
Confidence            999998754     489999988554     23455666   57899999999999999 8999999998743322 111


Q ss_pred             c---cCCCCcceeEEEEcCCCceEEEeecCCcEEEEecCCc--eeeeeeCCCeecCCCCCCCCceeeEEEEeCCCC----
Q 001415          958 V---PRESSAPITHATFSCDSQLVYACFLDATVCVFSAANL--KLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEP---- 1028 (1082)
Q Consensus       958 ~---~~~h~~~i~~l~~s~dg~~l~t~s~dg~v~vwd~~~~--~~~~~~~~~~~~~~gh~~~~v~~~~~~~~~~d~---- 1028 (1082)
                      .   ...|...|.+..|+||+.++||+|.|.+|+||.....  +.+..+.   .++.+     ...++++|.|-+.    
T Consensus       610 ~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~d~~i~~~a---~~~~~-----~aVTAv~~~~~~~~e~~  681 (764)
T KOG1063|consen  610 RFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDLRDKYISRFA---CLKFS-----LAVTAVAYLPVDHNEKG  681 (764)
T ss_pred             hhccccccceEEEEcccCcccceeEEecCCceEEEEeccCchhhhhhhhc---hhccC-----CceeeEEeecccccccc
Confidence            1   4579999999999999999999999999999999988  5555542   12222     2234677766443    


Q ss_pred             CeEEEEecCCcEEEEccC
Q 001415         1029 NEFALGLSDGGVHVFEPL 1046 (1082)
Q Consensus      1029 ~~l~s~~~dg~v~vW~~~ 1046 (1082)
                      ..+++|-+.|.|.+|...
T Consensus       682 ~~vavGle~GeI~l~~~~  699 (764)
T KOG1063|consen  682 DVVAVGLEKGEIVLWRRK  699 (764)
T ss_pred             ceEEEEecccEEEEEecc
Confidence            378999999999999976

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=100.00  E-value=5.7e-34  Score=289.89  Aligned_cols=509  Identities=19%  Similarity=0.262  Sum_probs=368.6

Q ss_pred             ceeeecCCCCCceEEEEecCCCeEEEEEcCCCc--------EEEEEccccceeeeeceeeeccCCCCcccccccccCCCC
Q 001415          350 TVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGD--------IGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGV  421 (1082)
Q Consensus       350 ~~~~~~~h~~~v~~~~~spdg~~llasgs~dg~--------i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~  421 (1082)
                      .....++|.+.|.|++.+||.- ++++|...|+        ++|||..+-..+..                   +..-..
T Consensus        96 ~Qr~y~GH~ddikc~~vHPdri-~vatGQ~ag~~g~~~~phvriWdsv~L~TL~V-------------------~g~f~~  155 (626)
T KOG2106|consen   96 SQRHYLGHNDDIKCMAVHPDRI-RVATGQGAGTSGRPLQPHVRIWDSVTLSTLHV-------------------IGFFDR  155 (626)
T ss_pred             hcccccCCCCceEEEeecCCce-eeccCcccccCCCcCCCeeeecccccceeeee-------------------eccccc
Confidence            3446778999999999999987 4888776663        99999877666653                   555667


Q ss_pred             ceeEEEEec--CCCeEEEE--eCCCeEEEEEccCCceeeEEEEeeccccCeeEEEecCCCCceEEEEEeCCCcEEEEEcc
Q 001415          422 SVNRVIWSP--DGSLFGVA--YSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDAT  497 (1082)
Q Consensus       422 ~V~~l~~sp--dg~~las~--~~d~~v~iwd~~~~~~~~~~~~~~~h~~~V~~l~fs~dg~~~~l~s~s~d~~i~vwd~~  497 (1082)
                      .|.|++||+  .|.+|+..  +.+..+.+||++.+....   ....-...|....|.|.+.. ++++++ .+.+.+|+.+
T Consensus       156 GV~~vaFsk~~~G~~l~~vD~s~~h~lSVWdWqk~~~~~---~vk~sne~v~~a~FHPtd~n-liit~G-k~H~~Fw~~~  230 (626)
T KOG2106|consen  156 GVTCVAFSKINGGSLLCAVDDSNPHMLSVWDWQKKAKLG---PVKTSNEVVFLATFHPTDPN-LIITCG-KGHLYFWTLR  230 (626)
T ss_pred             cceeeeecccCCCceEEEecCCCccccchhhchhhhccC---cceeccceEEEEEeccCCCc-EEEEeC-CceEEEEEcc
Confidence            999999999  45566654  345679999999887655   34455678999999999987 566666 5889999999


Q ss_pred             CCceeEE---eecC-CcCeEEEeeeecCCceEEEEecCCCcEEEEecCCCCceeeecCCCCceEEEEEccCCCeeeeccc
Q 001415          498 NGAKQYI---FEGH-EAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFR  573 (1082)
Q Consensus       498 ~~~~~~~---~~~h-~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~  573 (1082)
                      .+...++   +..+ ...|.+++|.++++   +++|..+|.|.||+..+.........|.+.|.+++...+|.       
T Consensus       231 ~~~l~k~~~~fek~ekk~Vl~v~F~engd---viTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~Gt-------  300 (626)
T KOG2106|consen  231 GGSLVKRQGIFEKREKKFVLCVTFLENGD---VITGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLRDGT-------  300 (626)
T ss_pred             CCceEEEeeccccccceEEEEEEEcCCCC---EEeecCCceEEEEeCCCceEEeEeeecCCceEEEEEecCcc-------
Confidence            8876653   3333 35689999877664   89999999999999877665555557888888888888876       


Q ss_pred             ccceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEecCCccc
Q 001415          574 KRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRL  653 (1082)
Q Consensus       574 ~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~iwd~~~~~~~  653 (1082)
                                     |++|+.|..|..|| ..-+.++..+......+++.++-...+  |++|...+.|..=.+.++..+
T Consensus       301 ---------------llSGgKDRki~~Wd-~~y~k~r~~elPe~~G~iRtv~e~~~d--i~vGTtrN~iL~Gt~~~~f~~  362 (626)
T KOG2106|consen  301 ---------------LLSGGKDRKIILWD-DNYRKLRETELPEQFGPIRTVAEGKGD--ILVGTTRNFILQGTLENGFTL  362 (626)
T ss_pred             ---------------EeecCccceEEecc-ccccccccccCchhcCCeeEEecCCCc--EEEeeccceEEEeeecCCceE
Confidence                           88899999999999 455555555555555566666544333  666666555543333222100


Q ss_pred             eeecccccccccccccccCCCCccccCCCCceeeeccCCceeEEEecccCCCCccccccccCcccccceeEEEEccCCce
Q 001415          654 LRTFENLAYDASRTSENSKNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNA  733 (1082)
Q Consensus       654 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~  733 (1082)
                                                                                  ...+|......++.+|+.++
T Consensus       363 ------------------------------------------------------------~v~gh~delwgla~hps~~q  382 (626)
T KOG2106|consen  363 ------------------------------------------------------------TVQGHGDELWGLATHPSKNQ  382 (626)
T ss_pred             ------------------------------------------------------------EEEecccceeeEEcCCChhh
Confidence                                                                        00126677888999999999


Q ss_pred             eeecccCCeEEEeeccccccCCCCCcccccCccccCCCCcceeecccCCCCCCCCccEEEeecCCCeEEEee-CCeEEEE
Q 001415          734 ILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLF  812 (1082)
Q Consensus       734 l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~l~~~s-dg~i~iw  812 (1082)
                      +++++.|+.+++|+-..               -+|...             -..++.|+.|+|.| .+|.|. .|...+.
T Consensus       383 ~~T~gqdk~v~lW~~~k---------------~~wt~~-------------~~d~~~~~~fhpsg-~va~Gt~~G~w~V~  433 (626)
T KOG2106|consen  383 LLTCGQDKHVRLWNDHK---------------LEWTKI-------------IEDPAECADFHPSG-VVAVGTATGRWFVL  433 (626)
T ss_pred             eeeccCcceEEEccCCc---------------eeEEEE-------------ecCceeEeeccCcc-eEEEeeccceEEEE
Confidence            99999999999996110               122211             35678899999999 888887 6999999


Q ss_pred             ecCCCeeEEEECCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEecccc-eeeeee-cccccCEEEEEEeCCCCEEEEEeC
Q 001415          813 NMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVD-EVKSKL-KGHSKRITGLAFSHALNVLVSSGA  890 (1082)
Q Consensus       813 d~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~-~~~~~l-~~h~~~V~~l~~s~d~~~l~s~s~  890 (1082)
                      |.++...+..-.. ...+++++|+| +|.+||+|+.|+.|+||.+..+ ...... +.|.++|+.+.||+|+++|.+-+.
T Consensus       434 d~e~~~lv~~~~d-~~~ls~v~ysp-~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~~~~~~S~  511 (626)
T KOG2106|consen  434 DTETQDLVTIHTD-NEQLSVVRYSP-DGAFLAVGSHDNHIYIYRVSANGRKYSRVGKCSGSPITHLDWSSDSQFLVSNSG  511 (626)
T ss_pred             ecccceeEEEEec-CCceEEEEEcC-CCCEEEEecCCCeEEEEEECCCCcEEEEeeeecCceeEEeeecCCCceEEeccC
Confidence            9999666555554 88899999999 9999999999999999998754 322222 334489999999999999999999


Q ss_pred             CCcEEEEEcCCcccccceeeeccCCCCCCCCCCcEEEEcCCCcEEEEEecCeEEEEEccCcceeeeec--cCCCCcceeE
Q 001415          891 DSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWV--PRESSAPITH  968 (1082)
Q Consensus       891 Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~~d~~i~iwd~~~~~~~~~~~--~~~h~~~i~~  968 (1082)
                      |-.|..|....  +...             ..+..+.|...                    .|..-|.  ...|...|..
T Consensus       512 d~eiLyW~~~~--~~~~-------------ts~kDvkW~t~--------------------~c~lGF~v~g~s~~t~i~a  556 (626)
T KOG2106|consen  512 DYEILYWKPSE--CKQI-------------TSVKDVKWATY--------------------TCTLGFEVFGGSDGTDINA  556 (626)
T ss_pred             ceEEEEEcccc--Cccc-------------ceecceeeeee--------------------EEEEEEEEecccCCchHHH
Confidence            99999993322  1100             11233333221                    1111111  1245778888


Q ss_pred             EEEcCCCceEEEeecCCcEEEEecCCceeeeeeCCCeecCCCCCCCCceeeEEEEeCCCCCeEEEEecCCcEEEEcc
Q 001415          969 ATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEP 1045 (1082)
Q Consensus       969 l~~s~dg~~l~t~s~dg~v~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~~~~~~~d~~~l~s~~~dg~v~vW~~ 1045 (1082)
                      ++-|.+.+++|+|.+.|+|++|...--+..+.+  +.+  .+|+++   ...++|.-.| .++++.+.|..|..|++
T Consensus       557 ~~rs~~~~~lA~gdd~g~v~lf~yPc~s~rA~~--he~--~ghs~~---vt~V~Fl~~d-~~li~tg~D~Si~qW~l  625 (626)
T KOG2106|consen  557 VARSHCEKLLASGDDFGKVHLFSYPCSSPRAPS--HEY--GGHSSH---VTNVAFLCKD-SHLISTGKDTSIMQWRL  625 (626)
T ss_pred             hhhhhhhhhhhccccCceEEEEccccCCCcccc--eee--ccccce---eEEEEEeeCC-ceEEecCCCceEEEEEe
Confidence            899999999999999999999998765554332  222  255455   4478998865 45666669999999986

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=100.00  E-value=3.5e-35  Score=287.77  Aligned_cols=338  Identities=17%  Similarity=0.248  Sum_probs=282.3

Q ss_pred             ccCCCCceeEEEEecCCCeEEEEeCCCeEEEEEccCCceeeEEEEeeccccCeeEEEecCCCCceEEEEEeCCCcEEEEE
Q 001415          416 VKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWD  495 (1082)
Q Consensus       416 ~~~h~~~V~~l~~spdg~~las~~~d~~v~iwd~~~~~~~~~~~~~~~h~~~V~~l~fs~dg~~~~l~s~s~d~~i~vwd  495 (1082)
                      +..|++.|.+++.+|+.+++|+|+.|....||++.++....   ++.+|.+.|+++.||.||.  +||||+.+|.|+||.
T Consensus        60 F~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~---eltgHKDSVt~~~Fshdgt--lLATGdmsG~v~v~~  134 (399)
T KOG0296|consen   60 FDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAG---ELTGHKDSVTCCSFSHDGT--LLATGDMSGKVLVFK  134 (399)
T ss_pred             hhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCccee---EecCCCCceEEEEEccCce--EEEecCCCccEEEEE
Confidence            78899999999999999999999999999999999999555   7899999999999999999  899999999999999


Q ss_pred             ccCCceeEEeecCCcCeEEEeeeecCCceEEEEecCCCcEEEEecCCCCceeeecCCCCceEEEEEccCCCeeeeccccc
Q 001415          496 ATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKR  575 (1082)
Q Consensus       496 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~  575 (1082)
                      ..++.....+......+.=+.|||..  ..|++|+.||.+-+|.+.+......+.+|..++++-.|.|||+         
T Consensus       135 ~stg~~~~~~~~e~~dieWl~WHp~a--~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGK---------  203 (399)
T KOG0296|consen  135 VSTGGEQWKLDQEVEDIEWLKWHPRA--HILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGK---------  203 (399)
T ss_pred             cccCceEEEeecccCceEEEEecccc--cEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCc---------
Confidence            99999999987667778888999855  7999999999999999998877788888888888877777776         


Q ss_pred             ceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEecCCcccee
Q 001415          576 SLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLR  655 (1082)
Q Consensus       576 ~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~iwd~~~~~~~~~  655 (1082)
                                  +++++..||+|++||..+++++..+....+ ...+++.++..+..++.|..++.+++-+..+++ .+.
T Consensus       204 ------------r~~tgy~dgti~~Wn~ktg~p~~~~~~~e~-~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgK-Vv~  269 (399)
T KOG0296|consen  204 ------------RILTGYDDGTIIVWNPKTGQPLHKITQAEG-LELPCISLNLAGSTLTKGNSEGVACGVNNGSGK-VVN  269 (399)
T ss_pred             ------------eEEEEecCceEEEEecCCCceeEEeccccc-CcCCccccccccceeEeccCCccEEEEccccce-EEE
Confidence                        799999999999999999999988875543 357889999999999999999988887665551 111


Q ss_pred             ecccccccccccccccCCCCccccCCCCceeeeccCCceeEEEecccCCCCccccccccCcccccceeEEEEccCCceee
Q 001415          656 TFENLAYDASRTSENSKNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAIL  735 (1082)
Q Consensus       656 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~  735 (1082)
                      ...+                                                                      .+..+.
T Consensus       270 ~~n~----------------------------------------------------------------------~~~~l~  279 (399)
T KOG0296|consen  270 CNNG----------------------------------------------------------------------TVPELK  279 (399)
T ss_pred             ecCC----------------------------------------------------------------------CCcccc
Confidence            1100                                                                      000000


Q ss_pred             ecccCCeEEEeeccccccCCCCCcccccCccccCCCCcceeecccCCCCCCCCccEEEeecCCCeEEEee-CCeEEEEec
Q 001415          736 ALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNM  814 (1082)
Q Consensus       736 ~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~l~~~s-dg~i~iwd~  814 (1082)
                      ..                                            .......|.++.++..-.+.|+|+ ||+|.|||+
T Consensus       280 ~~--------------------------------------------~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~  315 (399)
T KOG0296|consen  280 PS--------------------------------------------QEELDESVESIPSSSKLPLAACGSVDGTIAIYDL  315 (399)
T ss_pred             cc--------------------------------------------chhhhhhhhhcccccccchhhcccccceEEEEec
Confidence            00                                            000123344455555666778887 899999999


Q ss_pred             CCCeeEEEECCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEecccceeeeeecccccCEEEEEEeCCCCEEEEEeCCCcE
Q 001415          815 MTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQL  894 (1082)
Q Consensus       815 ~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i  894 (1082)
                      ...+....+. |...|+.+.|-+  ..+|++++.+|.|+.||.++|+++.++.||...|.+++++|+.++++|+|.|++.
T Consensus       316 a~~~~R~~c~-he~~V~~l~w~~--t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~Il~f~ls~~~~~vvT~s~D~~a  392 (399)
T KOG0296|consen  316 AASTLRHICE-HEDGVTKLKWLN--TDYLLTACANGKVRQWDARTGQLKFTYTGHQMGILDFALSPQKRLVVTVSDDNTA  392 (399)
T ss_pred             ccchhheecc-CCCceEEEEEcC--cchheeeccCceEEeeeccccceEEEEecCchheeEEEEcCCCcEEEEecCCCeE
Confidence            8877666655 788899999987  4688899999999999999999999999999999999999999999999999999


Q ss_pred             EEEEcC
Q 001415          895 CVWSSD  900 (1082)
Q Consensus       895 ~vwd~~  900 (1082)
                      +|+++.
T Consensus       393 ~VF~v~  398 (399)
T KOG0296|consen  393 LVFEVP  398 (399)
T ss_pred             EEEecC
Confidence            999864

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=100.00  E-value=2.1e-35  Score=279.09  Aligned_cols=295  Identities=15%  Similarity=0.227  Sum_probs=249.4

Q ss_pred             ccccceeEEEEccC-CceeeecccCCeEEEeeccccccCCCCCcccccCccccCCCCcceeecccCCCCCCCCccEEEee
Q 001415          717 LRATKISRLIFTNS-GNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALS  795 (1082)
Q Consensus       717 ~~~~~i~~~~~s~~-~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s  795 (1082)
                      +|.+.|..++..+. ...+++++.|..+.+|++...                 |.+.|.+... +.+  |...|..++.+
T Consensus        13 gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~d-----------------d~~~G~~~r~-~~G--HsH~v~dv~~s   72 (315)
T KOG0279|consen   13 GHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSD-----------------DIKYGVPVRR-LTG--HSHFVSDVVLS   72 (315)
T ss_pred             CCCceEEEEEeecCCCceEEEcccceEEEEEEeccC-----------------ccccCceeee-eec--cceEecceEEc
Confidence            39999999999887 467889999999999998753                 3344444443 333  99999999999


Q ss_pred             cCCCeEEEee-CCeEEEEecCCCeeEEEECCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEecccceeeeeeccc--ccC
Q 001415          796 KNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGH--SKR  872 (1082)
Q Consensus       796 ~dg~~l~~~s-dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h--~~~  872 (1082)
                      +||++.++++ |+.+++||+.+++..+.|.+|...|.+++|++ |.+.+++|+.|.+|.+|+...+ +..++..+  .+-
T Consensus        73 ~dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~-dn~qivSGSrDkTiklwnt~g~-ck~t~~~~~~~~W  150 (315)
T KOG0279|consen   73 SDGNFALSASWDGTLRLWDLATGESTRRFVGHTKDVLSVAFST-DNRQIVSGSRDKTIKLWNTLGV-CKYTIHEDSHREW  150 (315)
T ss_pred             cCCceEEeccccceEEEEEecCCcEEEEEEecCCceEEEEecC-CCceeecCCCcceeeeeeeccc-EEEEEecCCCcCc
Confidence            9999999998 89999999999999999999999999999999 8999999999999999998754 44444333  789


Q ss_pred             EEEEEEeCC--CCEEEEEeCCCcEEEEEcCCcccccceeeeccCCCCCCCCCCcEEEEcCCCcEEEE-EecCeEEEEEcc
Q 001415          873 ITGLAFSHA--LNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFETT  949 (1082)
Q Consensus       873 V~~l~~s~d--~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~-~~d~~i~iwd~~  949 (1082)
                      |+|+.|+|+  ..+|++++.|++|++||+++.     +....+.||.   +.++.+++||||..+++ +.||.+.+||++
T Consensus       151 VscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~-----~l~~~~~gh~---~~v~t~~vSpDGslcasGgkdg~~~LwdL~  222 (315)
T KOG0279|consen  151 VSCVRFSPNESNPIIVSASWDKTVKVWNLRNC-----QLRTTFIGHS---GYVNTVTVSPDGSLCASGGKDGEAMLWDLN  222 (315)
T ss_pred             EEEEEEcCCCCCcEEEEccCCceEEEEccCCc-----chhhcccccc---ccEEEEEECCCCCEEecCCCCceEEEEEcc
Confidence            999999998  789999999999999999993     4556666777   78999999999999999 689999999999


Q ss_pred             CcceeeeeccCCCCcceeEEEEcCCCceEEEeecCCcEEEEecCCceeeeeeCCCeecCCCCCCCCceeeEEEEeCCCCC
Q 001415          950 KLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPN 1029 (1082)
Q Consensus       950 ~~~~~~~~~~~~h~~~i~~l~~s~dg~~l~t~s~dg~v~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~~~~~~~d~~ 1029 (1082)
                      .++++..+   +|...|.+++|+|+.-+|+.+ .+..|+|||++++.++..+.+..--+ .-....+..++++|++ ||.
T Consensus       223 ~~k~lysl---~a~~~v~sl~fspnrywL~~a-t~~sIkIwdl~~~~~v~~l~~d~~g~-s~~~~~~~clslaws~-dG~  296 (315)
T KOG0279|consen  223 EGKNLYSL---EAFDIVNSLCFSPNRYWLCAA-TATSIKIWDLESKAVVEELKLDGIGP-SSKAGDPICLSLAWSA-DGQ  296 (315)
T ss_pred             CCceeEec---cCCCeEeeEEecCCceeEeec-cCCceEEEeccchhhhhhcccccccc-ccccCCcEEEEEEEcC-CCc
Confidence            99997666   578999999999987766655 46679999999999998776444333 2234457889999999 799


Q ss_pred             eEEEEecCCcEEEEccCC
Q 001415         1030 EFALGLSDGGVHVFEPLE 1047 (1082)
Q Consensus      1030 ~l~s~~~dg~v~vW~~~~ 1047 (1082)
                      .|+.|..|+.|++|.+..
T Consensus       297 tLf~g~td~~irv~qv~~  314 (315)
T KOG0279|consen  297 TLFAGYTDNVIRVWQVAK  314 (315)
T ss_pred             EEEeeecCCcEEEEEeec
Confidence            999999999999998753

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=4.2e-36  Score=293.91  Aligned_cols=303  Identities=17%  Similarity=0.273  Sum_probs=265.8

Q ss_pred             ceeeecCCCCCceEEEEecCCCeEEEEEcCCCcEEEEEccccceeeeeceeeeccCCCCcccccccccCCCCceeEEEEe
Q 001415          350 TVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWS  429 (1082)
Q Consensus       350 ~~~~~~~h~~~v~~~~~spdg~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s  429 (1082)
                      ...++.+|..+|+.+-|+|+-. ++|+++.|++|++||..+|+....                   ++||++.|..++|+
T Consensus       100 l~~~l~g~r~~vt~v~~hp~~~-~v~~as~d~tikv~D~~tg~~e~~-------------------LrGHt~sv~di~~~  159 (406)
T KOG0295|consen  100 LVQKLAGHRSSVTRVIFHPSEA-LVVSASEDATIKVFDTETGELERS-------------------LRGHTDSVFDISFD  159 (406)
T ss_pred             chhhhhccccceeeeeeccCce-EEEEecCCceEEEEEccchhhhhh-------------------hhccccceeEEEEe
Confidence            3446778999999999999998 799999999999999999998653                   89999999999999


Q ss_pred             cCCCeEEEEeCCCeEEEEEccCC-ceeeEEEEeeccccCeeEEEecCCCCceEEEEEeCCCcEEEEEccCCceeEEeecC
Q 001415          430 PDGSLFGVAYSRHIVQIYSYHGG-DEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGH  508 (1082)
Q Consensus       430 pdg~~las~~~d~~v~iwd~~~~-~~~~~~~~~~~h~~~V~~l~fs~dg~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h  508 (1082)
                      ..|++||+++.|-.+++||.++. ++++   .+.+|...|.++.|-|.|.  +++|++.|.+|+.|++.+|.+++++.+|
T Consensus       160 a~Gk~l~tcSsDl~~~LWd~~~~~~c~k---s~~gh~h~vS~V~f~P~gd--~ilS~srD~tik~We~~tg~cv~t~~~h  234 (406)
T KOG0295|consen  160 ASGKYLATCSSDLSAKLWDFDTFFRCIK---SLIGHEHGVSSVFFLPLGD--HILSCSRDNTIKAWECDTGYCVKTFPGH  234 (406)
T ss_pred             cCccEEEecCCccchhheeHHHHHHHHH---HhcCcccceeeEEEEecCC--eeeecccccceeEEecccceeEEeccCc
Confidence            99999999999999999999873 3344   6889999999999999998  8999999999999999999999999999


Q ss_pred             CcCeEEEeeeecCCceEEEEecCCCcEEEEecCCCCceeeecCCCCceEEEEEccCCCeeeecccccceeEEEec-CCCC
Q 001415          509 EAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFD-TTKN  587 (1082)
Q Consensus       509 ~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~i~~~~~~-~~~~  587 (1082)
                      ...|..+..  ..||.++++++.|.++++|-+.+..+...+..|..+|.+++|.|....-  .     +....-+ ..+.
T Consensus       235 ~ewvr~v~v--~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~--~-----i~~at~~~~~~~  305 (406)
T KOG0295|consen  235 SEWVRMVRV--NQDGTIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYP--S-----ISEATGSTNGGQ  305 (406)
T ss_pred             hHhEEEEEe--cCCeeEEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCc--c-----hhhccCCCCCcc
Confidence            999998885  5677999999999999999999999999999999999999999876411  0     0000001 1345


Q ss_pred             EEEEEeCCCeEEEEECCCcceEEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEecCCccceeeccccccccccc
Q 001415          588 RFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRT  667 (1082)
Q Consensus       588 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  667 (1082)
                      ++++++.|++|++||+.++.++.++.+|..  .|..++|+|.|+||+++.+|+++++||+.+. ++.+.+..|..-+.  
T Consensus       306 ~l~s~SrDktIk~wdv~tg~cL~tL~ghdn--wVr~~af~p~Gkyi~ScaDDktlrvwdl~~~-~cmk~~~ah~hfvt--  380 (406)
T KOG0295|consen  306 VLGSGSRDKTIKIWDVSTGMCLFTLVGHDN--WVRGVAFSPGGKYILSCADDKTLRVWDLKNL-QCMKTLEAHEHFVT--  380 (406)
T ss_pred             EEEeecccceEEEEeccCCeEEEEEecccc--eeeeeEEcCCCeEEEEEecCCcEEEEEeccc-eeeeccCCCcceeE--
Confidence            888999999999999999999999998876  8999999999999999999999999999998 78888888777666  


Q ss_pred             ccccCCCCccccCCCCceeeeccCCceeEEE
Q 001415          668 SENSKNGDVRSLADVKPRITEESNDKSKVWK  698 (1082)
Q Consensus       668 ~~~~~~~~~~~s~~~~~l~~~~~d~~i~iw~  698 (1082)
                      ++.|       ..+..++++|+-|.++++|.
T Consensus       381 ~lDf-------h~~~p~VvTGsVdqt~KvwE  404 (406)
T KOG0295|consen  381 SLDF-------HKTAPYVVTGSVDQTVKVWE  404 (406)
T ss_pred             EEec-------CCCCceEEeccccceeeeee
Confidence            6777       55566899999999999996

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=9.3e-34  Score=295.48  Aligned_cols=460  Identities=15%  Similarity=0.191  Sum_probs=354.4

Q ss_pred             ccCCCCceeEEEEecCCCeEEEEeCCCeEEEEEccCCceeeEEEEeeccccCeeEEEecCCCCceEEEEEeCCCcEEEEE
Q 001415          416 VKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWD  495 (1082)
Q Consensus       416 ~~~h~~~V~~l~~spdg~~las~~~d~~v~iwd~~~~~~~~~~~~~~~h~~~V~~l~fs~dg~~~~l~s~s~d~~i~vwd  495 (1082)
                      +..++..|.++.|.|...+++++-.+|.|.|||.++...++   .+.-..-+|.+..|-+--+  ++++|++|..|+|++
T Consensus         9 ~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVk---sfeV~~~PvRa~kfiaRkn--Wiv~GsDD~~IrVfn   83 (794)
T KOG0276|consen    9 FQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVK---SFEVSEVPVRAAKFIARKN--WIVTGSDDMQIRVFN   83 (794)
T ss_pred             hhccCCceeeeecCCCCceEEEeeecCeeEEEecccceeee---eeeecccchhhheeeeccc--eEEEecCCceEEEEe
Confidence            45588999999999999999999999999999999988777   5666778999999998777  899999999999999


Q ss_pred             ccCCceeEEeecCCcCeEEEeeeecCCceEEEEecCCCcEEEEecCCCC-ceeeecCCCCceEEEEEccCCCeeeecccc
Q 001415          496 ATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLG-SRVDYEAPGRWCTTMAYSADGTRTYQGFRK  574 (1082)
Q Consensus       496 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~-~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~  574 (1082)
                      ..+++.++.|.+|.+-|.+++.||..  .++++++.|-+|++||++..- +..++.+|.+.|..++|.|...        
T Consensus        84 ynt~ekV~~FeAH~DyIR~iavHPt~--P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~--------  153 (794)
T KOG0276|consen   84 YNTGEKVKTFEAHSDYIRSIAVHPTL--PYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDP--------  153 (794)
T ss_pred             cccceeeEEeeccccceeeeeecCCC--CeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCc--------
Confidence            99999999999999999999999876  599999999999999998754 4568889999999998888654        


Q ss_pred             cceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEEecCCCCCCcCeEEEcC--CCCEEEEEECCCcEEEEEecCCcc
Q 001415          575 RSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNK--DGCLLAVSTNDNGIKILATSDGIR  652 (1082)
Q Consensus       575 ~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~--dg~~l~~~~~dg~i~iwd~~~~~~  652 (1082)
                                  +.|++++-|++|+||.+.+..+..++++|..  .|+++.|-+  |..+|++|++|..++|||.++. .
T Consensus       154 ------------ntFaS~sLDrTVKVWslgs~~~nfTl~gHek--GVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk-~  218 (794)
T KOG0276|consen  154 ------------NTFASASLDRTVKVWSLGSPHPNFTLEGHEK--GVNCVDYYTGGDKPYLISGADDLTIKVWDYQTK-S  218 (794)
T ss_pred             ------------cceeeeeccccEEEEEcCCCCCceeeecccc--CcceEEeccCCCcceEEecCCCceEEEeecchH-H
Confidence                        4799999999999999999999999987765  799999987  4579999999999999999988 8


Q ss_pred             ceeecccccccccccccccCCCCccccCCCCceeeeccCCceeEEEecccCCCCccccccccCcccccceeEEEEccCCc
Q 001415          653 LLRTFENLAYDASRTSENSKNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGN  732 (1082)
Q Consensus       653 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~  732 (1082)
                      +++++.+|...+.  .+.|       .|.-..+++|+.||++++|+..+......+..       ...++.+++-.+.+.
T Consensus       219 CV~TLeGHt~Nvs--~v~f-------hp~lpiiisgsEDGTvriWhs~Ty~lE~tLn~-------gleRvW~I~~~k~~~  282 (794)
T KOG0276|consen  219 CVQTLEGHTNNVS--FVFF-------HPELPIIISGSEDGTVRIWNSKTYKLEKTLNY-------GLERVWCIAAHKGDG  282 (794)
T ss_pred             HHHHhhcccccce--EEEe-------cCCCcEEEEecCCccEEEecCcceehhhhhhc-------CCceEEEEeecCCCC
Confidence            9999999998876  5666       78888999999999999999876543332221       457899999999888


Q ss_pred             eeeecccCCeEEEeeccccccCCCCCcccccCccccCCCCcceeecccCCCCCCCCccEEEeecCCCeEEEeeC--CeEE
Q 001415          733 AILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASG--GKIS  810 (1082)
Q Consensus       733 ~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~l~~~sd--g~i~  810 (1082)
                      .++.+..+|.+.+=                                      -......+.+++.|+++-+...  -.+.
T Consensus       283 ~i~vG~Deg~i~v~--------------------------------------lgreeP~vsMd~~gKIiwa~~~ei~~~~  324 (794)
T KOG0276|consen  283 KIAVGFDEGSVTVK--------------------------------------LGREEPAVSMDSNGKIIWAVHSEIQAVN  324 (794)
T ss_pred             eEEEeccCCcEEEE--------------------------------------ccCCCCceeecCCccEEEEcCceeeeee
Confidence            88888888877652                                      1222334555666655544331  1111


Q ss_pred             EE------ecCCCeeEE----EECCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEecccceeeeeecccccCEEEEEEeC
Q 001415          811 LF------NMMTFKTMA----TFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSH  880 (1082)
Q Consensus       811 iw------d~~~~~~~~----~~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~  880 (1082)
                      +-      ++..|+.+.    .+-...-....++.+| +|+++++++ ||.-.||..-..+     ..+.+.-....|++
T Consensus       325 ~ks~~~~~ev~DgErL~LsvKeLgs~eiyPq~L~hsP-NGrfV~Vcg-dGEyiIyTala~R-----nK~fG~~~eFvw~~  397 (794)
T KOG0276|consen  325 LKSVGAQKEVTDGERLPLSVKELGSVEIYPQTLAHSP-NGRFVVVCG-DGEYIIYTALALR-----NKAFGSGLEFVWAA  397 (794)
T ss_pred             ceeccCcccccCCccccchhhhccccccchHHhccCC-CCcEEEEec-CccEEEEEeeehh-----hcccccceeEEEcC
Confidence            11      222332221    1111122245688899 898887665 8888888632211     12445567788999


Q ss_pred             CCCEEEEEeCCCcEEEEEcCCcccccceeeeccCCCCCCCCCCcEEEEcCCCcEEEEEecCeEEEEEccCcceeeeeccC
Q 001415          881 ALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPR  960 (1082)
Q Consensus       881 d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~~d~~i~iwd~~~~~~~~~~~~~  960 (1082)
                      |....++-..++.|+++  +..+..+  .+..          -..+.+--.|.+|.+..++.+++||.++++.++.+.. 
T Consensus       398 dsne~avRes~~~vki~--knfke~k--si~~----------~~~~e~i~gg~Llg~~ss~~~~fydW~~~~lVrrI~v-  462 (794)
T KOG0276|consen  398 DSNEFAVRESNGNVKIF--KNFKEHK--SIRP----------DMSAEGIFGGPLLGVRSSDFLCFYDWESGELVRRIEV-  462 (794)
T ss_pred             CCCeEEEEecCCceEEE--ecceecc--cccc----------ccceeeecCCceEEEEeCCeEEEEEcccceEEEEEee-
Confidence            98888888888889988  3322111  1110          0112233356677778899999999999999998864 


Q ss_pred             CCCcceeEEEEcCCCceEEEeecCC
Q 001415          961 ESSAPITHATFSCDSQLVYACFLDA  985 (1082)
Q Consensus       961 ~h~~~i~~l~~s~dg~~l~t~s~dg  985 (1082)
                          ....+.|+.+|.+++.++.|.
T Consensus       463 ----~~k~v~w~d~g~lVai~~d~S  483 (794)
T KOG0276|consen  463 ----TSKHVYWSDNGELVAIAGDDS  483 (794)
T ss_pred             ----ccceeEEecCCCEEEEEecCc
Confidence                456789999999999888664

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=100.00  E-value=9.5e-35  Score=269.46  Aligned_cols=297  Identities=18%  Similarity=0.294  Sum_probs=238.8

Q ss_pred             eEEEEEcCCCcEEEEEccccceeeeeceeeeccCCCCcccccccccCCCCceeEEEEecCCCeEEEEeCCCeEEEEEccC
Q 001415          372 TLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHG  451 (1082)
Q Consensus       372 ~llasgs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d~~v~iwd~~~  451 (1082)
                      -+||+++.|.+|++|...+|.+..+                   +....+.|+.+.+.||+++||+++. ..|++||+.+
T Consensus        11 viLvsA~YDhTIRfWqa~tG~C~rT-------------------iqh~dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~~S   70 (311)
T KOG0315|consen   11 VILVSAGYDHTIRFWQALTGICSRT-------------------IQHPDSQVNRLEITPDKKDLAAAGN-QHVRLYDLNS   70 (311)
T ss_pred             eEEEeccCcceeeeeehhcCeEEEE-------------------EecCccceeeEEEcCCcchhhhccC-CeeEEEEccC
Confidence            3899999999999999999999875                   4455778999999999999999975 5699999999


Q ss_pred             CceeeEEEEeeccccCeeEEEecCCCCceEEEEEeCCCcEEEEEccCCceeEEeecCCcCeEEEeeeecCCceEEEEecC
Q 001415          452 GDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTAL  531 (1082)
Q Consensus       452 ~~~~~~~~~~~~h~~~V~~l~fs~dg~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~  531 (1082)
                      +..- +..++.+|...|+++.|-.+|+  .+++||+||+++|||++...+.+.+. |..+|+++..+|..  .-|++|..
T Consensus        71 ~np~-Pv~t~e~h~kNVtaVgF~~dgr--WMyTgseDgt~kIWdlR~~~~qR~~~-~~spVn~vvlhpnQ--teLis~dq  144 (311)
T KOG0315|consen   71 NNPN-PVATFEGHTKNVTAVGFQCDGR--WMYTGSEDGTVKIWDLRSLSCQRNYQ-HNSPVNTVVLHPNQ--TELISGDQ  144 (311)
T ss_pred             CCCC-ceeEEeccCCceEEEEEeecCe--EEEecCCCceEEEEeccCcccchhcc-CCCCcceEEecCCc--ceEEeecC
Confidence            8754 4558999999999999999999  89999999999999999977777766 77899999887654  34555655


Q ss_pred             CCcEEEEecCCCCceeeecCCCCceEEEEEccCCCeeeecccccceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEE
Q 001415          532 DGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTS  611 (1082)
Q Consensus       532 dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~  611 (1082)
                      +|.|++||+.                                                               +..+...
T Consensus       145 sg~irvWDl~---------------------------------------------------------------~~~c~~~  161 (311)
T KOG0315|consen  145 SGNIRVWDLG---------------------------------------------------------------ENSCTHE  161 (311)
T ss_pred             CCcEEEEEcc---------------------------------------------------------------CCccccc
Confidence            5555555554                                                               3333333


Q ss_pred             EecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEecCCccceeecccccccccccccccCCCCccccCCCCceeeeccC
Q 001415          612 IDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKNGDVRSLADVKPRITEESN  691 (1082)
Q Consensus       612 ~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d  691 (1082)
                      +-.+.. ..|.++...|||.+++.+...|..++|++-+. .....+.                                 
T Consensus       162 liPe~~-~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~-~~~s~l~---------------------------------  206 (311)
T KOG0315|consen  162 LIPEDD-TSIQSLTVMPDGSMLAAANNKGNCYVWRLLNH-QTASELE---------------------------------  206 (311)
T ss_pred             cCCCCC-cceeeEEEcCCCcEEEEecCCccEEEEEccCC-Cccccce---------------------------------
Confidence            322222 36889999999999999999999999987553 1000000                                 


Q ss_pred             CceeEEEecccCCCCccccccccCcccccceeEEEEccCCceeeecccCCeEEEeeccccccCCCCCcccccCccccCCC
Q 001415          692 DKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPP  771 (1082)
Q Consensus       692 ~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~  771 (1082)
                                                   ++..                                               
T Consensus       207 -----------------------------P~~k-----------------------------------------------  210 (311)
T KOG0315|consen  207 -----------------------------PVHK-----------------------------------------------  210 (311)
T ss_pred             -----------------------------Ehhh-----------------------------------------------
Confidence                                         0000                                               


Q ss_pred             CcceeecccCCCCCCCCccEEEeecCCCeEEEee-CCeEEEEecCCC-eeEEEECCCCCCeeEEEEecCCCcEEEEEeCC
Q 001415          772 SGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTF-KTMATFMPPPPAATFLAFHPQDNNIIAIGMDD  849 (1082)
Q Consensus       772 ~~~~~~~~~~~~~~~~~i~~l~~s~dg~~l~~~s-dg~i~iwd~~~~-~~~~~~~~~~~~v~~l~~sp~~~~~lasg~~d  849 (1082)
                              +  ..|...+..+.+|||+++||+++ |.+++||+.++. +....+.+|...+..++||. |++||++|+.|
T Consensus       211 --------~--~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~-dg~YlvTassd  279 (311)
T KOG0315|consen  211 --------F--QAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDFFKLELVLTGHQRWVWDCAFSA-DGEYLVTASSD  279 (311)
T ss_pred             --------e--ecccceEEEEEECCCCcEEEeecCCceEEEEecCCceeeEEEeecCCceEEeeeecc-CccEEEecCCC
Confidence                    0  11777788888999999999887 688999999887 66778899999999999999 99999999999


Q ss_pred             CcEEEEecccceeeeeecccccCEEEEEEe
Q 001415          850 SSIQIYNVRVDEVKSKLKGHSKRITGLAFS  879 (1082)
Q Consensus       850 g~v~iwd~~~~~~~~~l~~h~~~V~~l~~s  879 (1082)
                      +.+++|++..++.++...+|.....|++..
T Consensus       280 ~~~rlW~~~~~k~v~qy~gh~K~~vc~~ln  309 (311)
T KOG0315|consen  280 HTARLWDLSAGKEVRQYQGHHKAAVCVALN  309 (311)
T ss_pred             CceeecccccCceeeecCCcccccEEEEee
Confidence            999999999999999999999988888764

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=100.00  E-value=3.9e-34  Score=265.37  Aligned_cols=273  Identities=15%  Similarity=0.244  Sum_probs=228.3

Q ss_pred             ceeeecccCCeEEEeeccccccCCCCCcccccCccccCCCCcceeecccCCCCCCCCccEEEeecCCCeEEEeeCCeEEE
Q 001415          732 NAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGKISL  811 (1082)
Q Consensus       732 ~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~l~~~sdg~i~i  811 (1082)
                      -+|++++-|.+|++|                      +..+|.+......   ....|..+.+.||++.||+++.-.|++
T Consensus        11 viLvsA~YDhTIRfW----------------------qa~tG~C~rTiqh---~dsqVNrLeiTpdk~~LAaa~~qhvRl   65 (311)
T KOG0315|consen   11 VILVSAGYDHTIRFW----------------------QALTGICSRTIQH---PDSQVNRLEITPDKKDLAAAGNQHVRL   65 (311)
T ss_pred             eEEEeccCcceeeee----------------------ehhcCeEEEEEec---CccceeeEEEcCCcchhhhccCCeeEE
Confidence            358888999988887                      5567776654331   578899999999999999999999999


Q ss_pred             EecCCCe--eEEEECCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEecccceeeeeecccccCEEEEEEeCCCCEEEEEe
Q 001415          812 FNMMTFK--TMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSG  889 (1082)
Q Consensus       812 wd~~~~~--~~~~~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s  889 (1082)
                      ||+.++.  ++.++.+|...|+++.|.- +|+++++|++||+++|||++.-.+.+.++ |.++|+++..+|+..-|++++
T Consensus        66 yD~~S~np~Pv~t~e~h~kNVtaVgF~~-dgrWMyTgseDgt~kIWdlR~~~~qR~~~-~~spVn~vvlhpnQteLis~d  143 (311)
T KOG0315|consen   66 YDLNSNNPNPVATFEGHTKNVTAVGFQC-DGRWMYTGSEDGTVKIWDLRSLSCQRNYQ-HNSPVNTVVLHPNQTELISGD  143 (311)
T ss_pred             EEccCCCCCceeEEeccCCceEEEEEee-cCeEEEecCCCceEEEEeccCcccchhcc-CCCCcceEEecCCcceEEeec
Confidence            9999765  5899999999999999999 99999999999999999999966655555 779999999999999999999


Q ss_pred             CCCcEEEEEcCCcccccceeeeccCCCCCCCCCCcEEEEcCCCcEEEEE-ecCeEEEEEccCcceeeeec----cCCCCc
Q 001415          890 ADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQLAIFETTKLECVKQWV----PRESSA  964 (1082)
Q Consensus       890 ~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~-~d~~i~iwd~~~~~~~~~~~----~~~h~~  964 (1082)
                      .+|.|++||+....+...   ..++..    ..|.++...|||.+++++ ..|..++|++-+.+....+.    ...|.+
T Consensus       144 qsg~irvWDl~~~~c~~~---liPe~~----~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~  216 (311)
T KOG0315|consen  144 QSGNIRVWDLGENSCTHE---LIPEDD----TSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNG  216 (311)
T ss_pred             CCCcEEEEEccCCccccc---cCCCCC----cceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccc
Confidence            999999999988543221   112111    568999999999999996 56899999987654333322    347899


Q ss_pred             ceeEEEEcCCCceEEEeecCCcEEEEecCCc-eeeeeeCCCeecCCCCCCCCceeeEEEEeCCCCCeEEEEecCCcEEEE
Q 001415          965 PITHATFSCDSQLVYACFLDATVCVFSAANL-KLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVF 1043 (1082)
Q Consensus       965 ~i~~l~~s~dg~~l~t~s~dg~v~vwd~~~~-~~~~~~~~~~~~~~gh~~~~v~~~~~~~~~~d~~~l~s~~~dg~v~vW 1043 (1082)
                      .+..+.+|||+++||++|.|.+++||+.++. +...++.       || ...++  .++|+. |+.+|++|+.|+.+++|
T Consensus       217 ~il~C~lSPd~k~lat~ssdktv~iwn~~~~~kle~~l~-------gh-~rWvW--dc~FS~-dg~YlvTassd~~~rlW  285 (311)
T KOG0315|consen  217 HILRCLLSPDVKYLATCSSDKTVKIWNTDDFFKLELVLT-------GH-QRWVW--DCAFSA-DGEYLVTASSDHTARLW  285 (311)
T ss_pred             eEEEEEECCCCcEEEeecCCceEEEEecCCceeeEEEee-------cC-CceEE--eeeecc-CccEEEecCCCCceeec
Confidence            9999999999999999999999999999988 5555555       54 23455  899998 79999999999999999


Q ss_pred             ccCCCC
Q 001415         1044 EPLESE 1049 (1082)
Q Consensus      1044 ~~~~~~ 1049 (1082)
                      +++.++
T Consensus       286 ~~~~~k  291 (311)
T KOG0315|consen  286 DLSAGK  291 (311)
T ss_pred             ccccCc
Confidence            999998

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=100.00  E-value=4.6e-33  Score=273.02  Aligned_cols=333  Identities=15%  Similarity=0.180  Sum_probs=259.9

Q ss_pred             ceeeecCCCCCceEEEEecCCCeEEEEEcCCCcEEEEEccccceeeeeceeeeccCCCCcccccccccCCCCceeEEEEe
Q 001415          350 TVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWS  429 (1082)
Q Consensus       350 ~~~~~~~h~~~v~~~~~spdg~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s  429 (1082)
                      .+..+.+|++.|.+++.+|+.+ ++|||+.|..-.||+..+|..+..                   +.+|++.|+|+.||
T Consensus        56 S~~tF~~H~~svFavsl~P~~~-l~aTGGgDD~AflW~~~~ge~~~e-------------------ltgHKDSVt~~~Fs  115 (399)
T KOG0296|consen   56 SLVTFDKHTDSVFAVSLHPNNN-LVATGGGDDLAFLWDISTGEFAGE-------------------LTGHKDSVTCCSFS  115 (399)
T ss_pred             ceeehhhcCCceEEEEeCCCCc-eEEecCCCceEEEEEccCCcceeE-------------------ecCCCCceEEEEEc
Confidence            3445667999999999999777 799999999999999999997764                   88999999999999


Q ss_pred             cCCCeEEEEeCCCeEEEEEccCCceeeEEEEeeccccCeeEEEecCCCCceEEEEEeCCCcEEEEEccCCceeEEeecCC
Q 001415          430 PDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHE  509 (1082)
Q Consensus       430 pdg~~las~~~d~~v~iwd~~~~~~~~~~~~~~~h~~~V~~l~fs~dg~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~  509 (1082)
                      .||.+||+|+.+|.|+||...++....   .+.+....|.-+.|.|-+.  +|+.|+.||.+.+|.+.++...+.+.||.
T Consensus       116 hdgtlLATGdmsG~v~v~~~stg~~~~---~~~~e~~dieWl~WHp~a~--illAG~~DGsvWmw~ip~~~~~kv~~Gh~  190 (399)
T KOG0296|consen  116 HDGTLLATGDMSGKVLVFKVSTGGEQW---KLDQEVEDIEWLKWHPRAH--ILLAGSTDGSVWMWQIPSQALCKVMSGHN  190 (399)
T ss_pred             cCceEEEecCCCccEEEEEcccCceEE---EeecccCceEEEEeccccc--EEEeecCCCcEEEEECCCcceeeEecCCC
Confidence            999999999999999999999998766   4545667888999999888  89999999999999999998899999999


Q ss_pred             cCeEEEeeeecCCceEEEEecCCCcEEEEecCCCCceeeecCCCCceEEEEEccCCCeeeecccccceeEEEecCCCCEE
Q 001415          510 APVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRF  589 (1082)
Q Consensus       510 ~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~i~~~~~~~~~~~l  589 (1082)
                      .++++=.|.|+  |+.++++..||+|++|++.++.+...+....+                    ....++.++..+..+
T Consensus       191 ~~ct~G~f~pd--GKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~--------------------~~~~~~~~~~~~~~~  248 (399)
T KOG0296|consen  191 SPCTCGEFIPD--GKRILTGYDDGTIIVWNPKTGQPLHKITQAEG--------------------LELPCISLNLAGSTL  248 (399)
T ss_pred             CCcccccccCC--CceEEEEecCceEEEEecCCCceeEEeccccc--------------------CcCCcccccccccee
Confidence            99999998765  68999999999999999999877765543221                    133344455555578


Q ss_pred             EEEeCCCeEEEEECCCcceEEEEecCCC------C---CCcCeEEEcCCCCEEEEEECCCcEEEEEecCCccceeecccc
Q 001415          590 LAAGDDFSIKFWDMDSVQLLTSIDADGG------L---PASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENL  660 (1082)
Q Consensus       590 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~------~---~~i~~~~~s~dg~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~  660 (1082)
                      +.|+.++.+++-+..+|+.+........      .   ..|.++.++..=.+.|+|+-||+|.|||+...          
T Consensus       249 ~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~----------  318 (399)
T KOG0296|consen  249 TKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAAS----------  318 (399)
T ss_pred             EeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccc----------
Confidence            8888999999988888888776653100      0   01112222222233334444444444443221          


Q ss_pred             cccccccccccCCCCccccCCCCceeeeccCCceeEEEecccCCCCccccccccCcccccceeEEEEccCCceeeecccC
Q 001415          661 AYDASRTSENSKNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASN  740 (1082)
Q Consensus       661 ~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d  740 (1082)
                                                                .....                                 
T Consensus       319 ------------------------------------------~~R~~---------------------------------  323 (399)
T KOG0296|consen  319 ------------------------------------------TLRHI---------------------------------  323 (399)
T ss_pred             ------------------------------------------hhhee---------------------------------
Confidence                                                      00000                                 


Q ss_pred             CeEEEeeccccccCCCCCcccccCccccCCCCcceeecccCCCCCCCCccEEEeecCCCeEEEee-CCeEEEEecCCCee
Q 001415          741 AIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKT  819 (1082)
Q Consensus       741 ~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~l~~~s-dg~i~iwd~~~~~~  819 (1082)
                                                             +   .|...|..+.|-+ ..+|++++ +|.|+.||.++|++
T Consensus       324 ---------------------------------------c---~he~~V~~l~w~~-t~~l~t~c~~g~v~~wDaRtG~l  360 (399)
T KOG0296|consen  324 ---------------------------------------C---EHEDGVTKLKWLN-TDYLLTACANGKVRQWDARTGQL  360 (399)
T ss_pred             ---------------------------------------c---cCCCceEEEEEcC-cchheeeccCceEEeeeccccce
Confidence                                                   0   1667788888877 45666655 89999999999999


Q ss_pred             EEEECCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEecc
Q 001415          820 MATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVR  858 (1082)
Q Consensus       820 ~~~~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~  858 (1082)
                      +.++.+|...|.+++++| +.+++++++.|++.+||++.
T Consensus       361 ~~~y~GH~~~Il~f~ls~-~~~~vvT~s~D~~a~VF~v~  398 (399)
T KOG0296|consen  361 KFTYTGHQMGILDFALSP-QKRLVVTVSDDNTALVFEVP  398 (399)
T ss_pred             EEEEecCchheeEEEEcC-CCcEEEEecCCCeEEEEecC
Confidence            999999999999999999 89999999999999999864

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=3.3e-34  Score=280.72  Aligned_cols=300  Identities=22%  Similarity=0.335  Sum_probs=267.8

Q ss_pred             ccCCCCceeEEEEecCCCeEEEEeCCCeEEEEEccCCceeeEEEEeeccccCeeEEEecCCCCceEEEEEeCCCcEEEEE
Q 001415          416 VKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWD  495 (1082)
Q Consensus       416 ~~~h~~~V~~l~~spdg~~las~~~d~~v~iwd~~~~~~~~~~~~~~~h~~~V~~l~fs~dg~~~~l~s~s~d~~i~vwd  495 (1082)
                      +.+|..+|+.+-|.|+-..+++++.|++|++||..+++...   .++||.+.|.+++|+..|+  ++++++.|-.+++||
T Consensus       104 l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~---~LrGHt~sv~di~~~a~Gk--~l~tcSsDl~~~LWd  178 (406)
T KOG0295|consen  104 LAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELER---SLRGHTDSVFDISFDASGK--YLATCSSDLSAKLWD  178 (406)
T ss_pred             hhccccceeeeeeccCceEEEEecCCceEEEEEccchhhhh---hhhccccceeEEEEecCcc--EEEecCCccchhhee
Confidence            67899999999999999999999999999999999999866   7999999999999999999  899999999999999


Q ss_pred             ccC-CceeEEeecCCcCeEEEeeeecCCceEEEEecCCCcEEEEecCCCCceeeecCCCCceEEEEEccCCCeeeecccc
Q 001415          496 ATN-GAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRK  574 (1082)
Q Consensus       496 ~~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~  574 (1082)
                      ..+ -++++.+.+|...|.+++|.|.+  .+|++++.|.+|+.|+++++-+..++.+|..+|..+....||.        
T Consensus       179 ~~~~~~c~ks~~gh~h~vS~V~f~P~g--d~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGt--------  248 (406)
T KOG0295|consen  179 FDTFFRCIKSLIGHEHGVSSVFFLPLG--DHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGT--------  248 (406)
T ss_pred             HHHHHHHHHHhcCcccceeeEEEEecC--CeeeecccccceeEEecccceeEEeccCchHhEEEEEecCCee--------
Confidence            987 67888999999999999998876  6999999999999999999999999999999999888888887        


Q ss_pred             cceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEecCCccce
Q 001415          575 RSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLL  654 (1082)
Q Consensus       575 ~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~iwd~~~~~~~~  654 (1082)
                                   .+++++.|.+|++|-..++++...+..|.+  +|.+++|.|...+  .     .|            
T Consensus       249 -------------i~As~s~dqtl~vW~~~t~~~k~~lR~hEh--~vEci~wap~~~~--~-----~i------------  294 (406)
T KOG0295|consen  249 -------------IIASCSNDQTLRVWVVATKQCKAELREHEH--PVECIAWAPESSY--P-----SI------------  294 (406)
T ss_pred             -------------EEEecCCCceEEEEEeccchhhhhhhcccc--ceEEEEecccccC--c-----ch------------
Confidence                         789999999999999999998888888777  6888888775321  0     00            


Q ss_pred             eecccccccccccccccCCCCccccCCCCceeeeccCCceeEEEecccCCCCccccccccCcccccceeEEEEccCCcee
Q 001415          655 RTFENLAYDASRTSENSKNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAI  734 (1082)
Q Consensus       655 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l  734 (1082)
                                     .+                                                               
T Consensus       295 ---------------~~---------------------------------------------------------------  296 (406)
T KOG0295|consen  295 ---------------SE---------------------------------------------------------------  296 (406)
T ss_pred             ---------------hh---------------------------------------------------------------
Confidence                           00                                                               


Q ss_pred             eecccCCeEEEeeccccccCCCCCcccccCccccCCCCcceeecccCCCCCCCCccEEEeecCCCeEEEee-CCeEEEEe
Q 001415          735 LALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFN  813 (1082)
Q Consensus       735 ~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~l~~~s-dg~i~iwd  813 (1082)
                      +++                                               ...         .++++++++ |++|++||
T Consensus       297 at~-----------------------------------------------~~~---------~~~~l~s~SrDktIk~wd  320 (406)
T KOG0295|consen  297 ATG-----------------------------------------------STN---------GGQVLGSGSRDKTIKIWD  320 (406)
T ss_pred             ccC-----------------------------------------------CCC---------CccEEEeecccceEEEEe
Confidence            000                                               000         345777777 78999999


Q ss_pred             cCCCeeEEEECCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEecccceeeeeecccccCEEEEEEeCCCCEEEEEeCCCc
Q 001415          814 MMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQ  893 (1082)
Q Consensus       814 ~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~  893 (1082)
                      +.++.++.++.+|...|..++|+| +|+||+++.+|+++++||++++++...+..|..-|++++|..+..+++||+-|.+
T Consensus       321 v~tg~cL~tL~ghdnwVr~~af~p-~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~lDfh~~~p~VvTGsVdqt  399 (406)
T KOG0295|consen  321 VSTGMCLFTLVGHDNWVRGVAFSP-GGKYILSCADDKTLRVWDLKNLQCMKTLEAHEHFVTSLDFHKTAPYVVTGSVDQT  399 (406)
T ss_pred             ccCCeEEEEEecccceeeeeEEcC-CCeEEEEEecCCcEEEEEeccceeeeccCCCcceeEEEecCCCCceEEeccccce
Confidence            999999999999999999999999 9999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEc
Q 001415          894 LCVWSS  899 (1082)
Q Consensus       894 i~vwd~  899 (1082)
                      +++|.-
T Consensus       400 ~KvwEc  405 (406)
T KOG0295|consen  400 VKVWEC  405 (406)
T ss_pred             eeeeec
Confidence            999963

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=100.00  E-value=4.7e-34  Score=278.14  Aligned_cols=299  Identities=17%  Similarity=0.264  Sum_probs=252.8

Q ss_pred             CcceeeecC-CCCCceEEEEecCCCeEEEEEcCCCcEEEEEccccceeeeeceeeeccCCCCcccccccccCCCCceeEE
Q 001415          348 PKTVTRTLN-QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRV  426 (1082)
Q Consensus       348 ~~~~~~~~~-h~~~v~~~~~spdg~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l  426 (1082)
                      |.++.+.+. |.+.|.|+++.|-.++ +++|+.|++|.|||+.+|++..+                   +.||-..|..+
T Consensus       140 pwKl~rVi~gHlgWVr~vavdP~n~w-f~tgs~DrtikIwDlatg~Lklt-------------------ltGhi~~vr~v  199 (460)
T KOG0285|consen  140 PWKLYRVISGHLGWVRSVAVDPGNEW-FATGSADRTIKIWDLATGQLKLT-------------------LTGHIETVRGV  199 (460)
T ss_pred             cceehhhhhhccceEEEEeeCCCcee-EEecCCCceeEEEEcccCeEEEe-------------------ecchhheeeee
Confidence            555556554 9999999999999996 99999999999999999998875                   88999999999


Q ss_pred             EEecCCCeEEEEeCCCeEEEEEccCCceeeEEEEeeccccCeeEEEecCCCCceEEEEEeCCCcEEEEEccCCceeEEee
Q 001415          427 IWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFE  506 (1082)
Q Consensus       427 ~~spdg~~las~~~d~~v~iwd~~~~~~~~~~~~~~~h~~~V~~l~fs~dg~~~~l~s~s~d~~i~vwd~~~~~~~~~~~  506 (1082)
                      ++|+--.||.+++.|+.|+.||++..+.++   .+.||-..|.|++..|.-.  .|++|+.|.+++|||+++...+..+.
T Consensus       200 avS~rHpYlFs~gedk~VKCwDLe~nkvIR---~YhGHlS~V~~L~lhPTld--vl~t~grDst~RvWDiRtr~~V~~l~  274 (460)
T KOG0285|consen  200 AVSKRHPYLFSAGEDKQVKCWDLEYNKVIR---HYHGHLSGVYCLDLHPTLD--VLVTGGRDSTIRVWDIRTRASVHVLS  274 (460)
T ss_pred             eecccCceEEEecCCCeeEEEechhhhhHH---HhccccceeEEEeccccce--eEEecCCcceEEEeeecccceEEEec
Confidence            999999999999999999999999999888   7889999999999999988  89999999999999999999999999


Q ss_pred             cCCcCeEEEeeeecCCceEEEEecCCCcEEEEecCCCCceeeecCCCCceEEEEEccCCCeeeecccccceeEEEecCCC
Q 001415          507 GHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTK  586 (1082)
Q Consensus       507 ~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~i~~~~~~~~~  586 (1082)
                      ||..+|.++.+.+..  ..+++|+.|++|++||+..++....+..|...+.+++..|.                     .
T Consensus       275 GH~~~V~~V~~~~~d--pqvit~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~---------------------e  331 (460)
T KOG0285|consen  275 GHTNPVASVMCQPTD--PQVITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPK---------------------E  331 (460)
T ss_pred             CCCCcceeEEeecCC--CceEEecCCceEEEeeeccCceeEeeecccceeeEEecCCc---------------------h
Confidence            999999999886654  47999999999999999998888877777776666665554                     4


Q ss_pred             CEEEEEeCCCeEEEEECCCcceEEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEecCCccceeecccccccccc
Q 001415          587 NRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASR  666 (1082)
Q Consensus       587 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~  666 (1082)
                      ..|++++.|. |+.|++..|..+..+.++..  -|.+++.+.|| ++++|+++|.+.+||..++. ..+.......+.  
T Consensus       332 ~~fASas~dn-ik~w~~p~g~f~~nlsgh~~--iintl~~nsD~-v~~~G~dng~~~fwdwksg~-nyQ~~~t~vqpG--  404 (460)
T KOG0285|consen  332 NLFASASPDN-IKQWKLPEGEFLQNLSGHNA--IINTLSVNSDG-VLVSGGDNGSIMFWDWKSGH-NYQRGQTIVQPG--  404 (460)
T ss_pred             hhhhccCCcc-ceeccCCccchhhccccccc--eeeeeeeccCc-eEEEcCCceEEEEEecCcCc-ccccccccccCC--
Confidence            4677877765 89999999999988877665  68889988877 67889999999999998883 222221110000  


Q ss_pred             cccccCCCCccccCCCCceeeeccCCceeEEEecccCCCCccccccccCcccccceeEEEEccCCceeeecccCCeEEEe
Q 001415          667 TSENSKNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLW  746 (1082)
Q Consensus       667 ~~~~~~~~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iw  746 (1082)
                                                              .+        .....|.+.+|...|..|+++..|..|++|
T Consensus       405 ----------------------------------------Sl--------~sEagI~as~fDktg~rlit~eadKtIk~~  436 (460)
T KOG0285|consen  405 ----------------------------------------SL--------ESEAGIFASCFDKTGSRLITGEADKTIKMY  436 (460)
T ss_pred             ----------------------------------------cc--------ccccceeEEeecccCceEEeccCCcceEEE
Confidence                                                    00        045678889999999999999999999999


Q ss_pred             ecc
Q 001415          747 KWQ  749 (1082)
Q Consensus       747 ~~~  749 (1082)
                      .-+
T Consensus       437 keD  439 (460)
T KOG0285|consen  437 KED  439 (460)
T ss_pred             ecc
Confidence            643

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=100.00  E-value=2.7e-33  Score=283.28  Aligned_cols=288  Identities=19%  Similarity=0.300  Sum_probs=250.7

Q ss_pred             CCCCceEEEEecCCCeEEEEEcCCCcEEEEEccccceeeeeceeeeccCCCCcccccccccCCCCceeEEEEecCCCeEE
Q 001415          357 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFG  436 (1082)
Q Consensus       357 h~~~v~~~~~spdg~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la  436 (1082)
                      ....|++++|+.+|. +||+|+.||.++||+...+. +.                   .+..|.++|.++.|+.+|.||+
T Consensus       234 ~nkdVT~L~Wn~~G~-~LatG~~~G~~riw~~~G~l-~~-------------------tl~~HkgPI~slKWnk~G~yil  292 (524)
T KOG0273|consen  234 SNKDVTSLDWNNDGT-LLATGSEDGEARIWNKDGNL-IS-------------------TLGQHKGPIFSLKWNKKGTYIL  292 (524)
T ss_pred             ccCCcceEEecCCCC-eEEEeecCcEEEEEecCchh-hh-------------------hhhccCCceEEEEEcCCCCEEE
Confidence            457899999999999 79999999999999986543 33                   3889999999999999999999


Q ss_pred             EEeCCCeEEEEEccCCceeeEEEEeeccccCeeEEEecCCCCceEEEEEeCCCcEEEEEccCCceeEEeecCCcCeEEEe
Q 001415          437 VAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVC  516 (1082)
Q Consensus       437 s~~~d~~v~iwd~~~~~~~~~~~~~~~h~~~V~~l~fs~dg~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~  516 (1082)
                      +++.|+++.+||..++....   .+.-|..+-..+.|-.+..   +++++.|+.|+|+-+....++.++.+|.++|.++.
T Consensus       293 S~~vD~ttilwd~~~g~~~q---~f~~~s~~~lDVdW~~~~~---F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk  366 (524)
T KOG0273|consen  293 SGGVDGTTILWDAHTGTVKQ---QFEFHSAPALDVDWQSNDE---FATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALK  366 (524)
T ss_pred             eccCCccEEEEeccCceEEE---eeeeccCCccceEEecCce---EeecCCCceEEEEEecCCCcceeeecccCceEEEE
Confidence            99999999999999998665   5667888878899987776   89999999999999999999999999999999999


Q ss_pred             eeecCCceEEEEecCCCcEEEEecCCCCceeeecCCCCceEEEEEccCCCeeeecccccceeEEEecCC-CCEEEEEeCC
Q 001415          517 PHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTT-KNRFLAAGDD  595 (1082)
Q Consensus       517 ~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~d  595 (1082)
                      |.+..  .+|++++.|+++++|..........+..|...|..+.|+|+|.             +..+|. +..+++++.|
T Consensus       367 ~n~tg--~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~-------------v~~n~~~~~~l~sas~d  431 (524)
T KOG0273|consen  367 WNPTG--SLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGP-------------VTSNPNMNLMLASASFD  431 (524)
T ss_pred             ECCCC--ceEEEecCCCeeEeeecCCCcchhhhhhhccceeeEeecCCCC-------------ccCCCcCCceEEEeecC
Confidence            87554  7999999999999999999899999999999999999999987             334443 3468889999


Q ss_pred             CeEEEEECCCcceEEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEecCCccceeecccccccccccccccCCCC
Q 001415          596 FSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKNGD  675 (1082)
Q Consensus       596 g~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  675 (1082)
                      ++|++||+..+.++..+..|..  +|.+++|+|+|+++++|+.||.|.+|+..++ ++++...                 
T Consensus       432 stV~lwdv~~gv~i~~f~kH~~--pVysvafS~~g~ylAsGs~dg~V~iws~~~~-~l~~s~~-----------------  491 (524)
T KOG0273|consen  432 STVKLWDVESGVPIHTLMKHQE--PVYSVAFSPNGRYLASGSLDGCVHIWSTKTG-KLVKSYQ-----------------  491 (524)
T ss_pred             CeEEEEEccCCceeEeeccCCC--ceEEEEecCCCcEEEecCCCCeeEeccccch-heeEeec-----------------
Confidence            9999999999999999976655  8999999999999999999999999999887 4443332                 


Q ss_pred             ccccCCCCceeeeccCCceeEEEecccCCCCccccccccCcccccceeEEEEccCCceeeecccCCeEEEeec
Q 001415          676 VRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKW  748 (1082)
Q Consensus       676 ~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iw~~  748 (1082)
                                                                ..+.|..++|+.+|..+.++..|+.+++-|+
T Consensus       492 ------------------------------------------~~~~Ifel~Wn~~G~kl~~~~sd~~vcvldl  522 (524)
T KOG0273|consen  492 ------------------------------------------GTGGIFELCWNAAGDKLGACASDGSVCVLDL  522 (524)
T ss_pred             ------------------------------------------CCCeEEEEEEcCCCCEEEEEecCCCceEEEe
Confidence                                                      2345777888888888888888888887654

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1.8e-33  Score=279.25  Aligned_cols=293  Identities=18%  Similarity=0.270  Sum_probs=240.3

Q ss_pred             cccCCCCceeEEEEecCCCeEEEEeCCCeEEEEEccCCceeeEEEEeeccccCeeEEEecCCCCceEEEEEeCCCcEEEE
Q 001415          415 LVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVW  494 (1082)
Q Consensus       415 ~~~~h~~~V~~l~~spdg~~las~~~d~~v~iwd~~~~~~~~~~~~~~~h~~~V~~l~fs~dg~~~~l~s~s~d~~i~vw  494 (1082)
                      ++..|+++|+-+.||++|+|||+++.|.+..||.+.....++...++.+|..+|..+.||||++  +|++|+.|..+.+|
T Consensus       219 il~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdr--yLlaCg~~e~~~lw  296 (519)
T KOG0293|consen  219 ILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDR--YLLACGFDEVLSLW  296 (519)
T ss_pred             hHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCC--eEEecCchHheeec
Confidence            5889999999999999999999999999999999987776777779999999999999999999  89999999999999


Q ss_pred             EccCCceeEEee-cCCcCeEEEeeeecCCceEEEEecCCCcEEEEecCCCCceeeecCCCCceEEEEEccCCCeeeeccc
Q 001415          495 DATNGAKQYIFE-GHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFR  573 (1082)
Q Consensus       495 d~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~  573 (1082)
                      |+.+|.+.+.+. +|...+.+++|.|++  ..+++|+.|+++..||++....                     ..+.+.+
T Consensus       297 Dv~tgd~~~~y~~~~~~S~~sc~W~pDg--~~~V~Gs~dr~i~~wdlDgn~~---------------------~~W~gvr  353 (519)
T KOG0293|consen  297 DVDTGDLRHLYPSGLGFSVSSCAWCPDG--FRFVTGSPDRTIIMWDLDGNIL---------------------GNWEGVR  353 (519)
T ss_pred             cCCcchhhhhcccCcCCCcceeEEccCC--ceeEecCCCCcEEEecCCcchh---------------------hcccccc
Confidence            999999988765 356789999997655  7899999999999999975321                     1122223


Q ss_pred             ccceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEecCCccc
Q 001415          574 KRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRL  653 (1082)
Q Consensus       574 ~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~iwd~~~~~~~  653 (1082)
                      ...+..+++.+||+++++.+.|..|++++.++......+..+.   +|+++.+|.||+++++.-.+..+++||+... ..
T Consensus       354 ~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lise~~---~its~~iS~d~k~~LvnL~~qei~LWDl~e~-~l  429 (519)
T KOG0293|consen  354 DPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRGLISEEQ---PITSFSISKDGKLALVNLQDQEIHLWDLEEN-KL  429 (519)
T ss_pred             cceeEEEEEcCCCcEEEEEecccceeeechhhhhhhccccccC---ceeEEEEcCCCcEEEEEcccCeeEEeecchh-hH
Confidence            3356666677777799999999999999998877665555443   5999999999999999999999999999854 44


Q ss_pred             eeecccccccccccccccCCCCccccCCCCceeeeccCCceeEEEecccCCCCccccccccCcccccceeEEEEccCCce
Q 001415          654 LRTFENLAYDASRTSENSKNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNA  733 (1082)
Q Consensus       654 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~  733 (1082)
                      ++.+.+|....                                                                    +
T Consensus       430 v~kY~Ghkq~~--------------------------------------------------------------------f  441 (519)
T KOG0293|consen  430 VRKYFGHKQGH--------------------------------------------------------------------F  441 (519)
T ss_pred             HHHhhcccccc--------------------------------------------------------------------e
Confidence            44444432211                                                                    0


Q ss_pred             eeecccCCeEEEeeccccccCCCCCcccccCccccCCCCcceeecccCCCCCCCCccEEEee-cCCCeEEEee-CCeEEE
Q 001415          734 ILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALS-KNDSYVMSAS-GGKISL  811 (1082)
Q Consensus       734 l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s-~dg~~l~~~s-dg~i~i  811 (1082)
                      ++                                                       .-||- .+.+++++|+ |++|+|
T Consensus       442 iI-------------------------------------------------------rSCFgg~~~~fiaSGSED~kvyI  466 (519)
T KOG0293|consen  442 II-------------------------------------------------------RSCFGGGNDKFIASGSEDSKVYI  466 (519)
T ss_pred             EE-------------------------------------------------------EeccCCCCcceEEecCCCceEEE
Confidence            11                                                       11111 2456889998 699999


Q ss_pred             EecCCCeeEEEECCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEeccc
Q 001415          812 FNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRV  859 (1082)
Q Consensus       812 wd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~  859 (1082)
                      |+..+++++..+.+|...|+||+|+|.+..++|+|++||+||||....
T Consensus       467 Whr~sgkll~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~~~  514 (519)
T KOG0293|consen  467 WHRISGKLLAVLSGHSKTVNCVSWNPADPEMFASASDDGTIRIWGPSD  514 (519)
T ss_pred             EEccCCceeEeecCCcceeeEEecCCCCHHHhhccCCCCeEEEecCCc
Confidence            999999999999999999999999999999999999999999998653

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=100.00  E-value=4.7e-32  Score=255.21  Aligned_cols=294  Identities=19%  Similarity=0.331  Sum_probs=225.5

Q ss_pred             eecCCCCCceEEEEecC-CCeEEEEEcCCCcEEEEEccccceeeeeceeeeccCCCCcccccccccCCCCceeEEEEecC
Q 001415          353 RTLNQGSSPMSMDFHPV-QQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPD  431 (1082)
Q Consensus       353 ~~~~h~~~v~~~~~spd-g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spd  431 (1082)
                      .+-+|++.|+.++|+|- |. +||+++.|+.|+||+...+....-               ...+-.+|+..|.++||||.
T Consensus         9 ~~~gh~~r~W~~awhp~~g~-ilAscg~Dk~vriw~~~~~~s~~c---------------k~vld~~hkrsVRsvAwsp~   72 (312)
T KOG0645|consen    9 KLSGHKDRVWSVAWHPGKGV-ILASCGTDKAVRIWSTSSGDSWTC---------------KTVLDDGHKRSVRSVAWSPH   72 (312)
T ss_pred             eecCCCCcEEEEEeccCCce-EEEeecCCceEEEEecCCCCcEEE---------------EEeccccchheeeeeeecCC
Confidence            55669999999999999 87 799999999999999985322211               11124589999999999999


Q ss_pred             CCeEEEEeCCCeEEEEEccCCceeeEEEEeeccccCeeEEEecCCCCceEEEEEeCCCcEEEEEccCC---ceeEEeecC
Q 001415          432 GSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNG---AKQYIFEGH  508 (1082)
Q Consensus       432 g~~las~~~d~~v~iwd~~~~~~~~~~~~~~~h~~~V~~l~fs~dg~~~~l~s~s~d~~i~vwd~~~~---~~~~~~~~h  508 (1082)
                      |++||+|+.|.++.||.-..++ .....++.||...|.|++||++|.  +||++++|++|.||.+..+   .++..++.|
T Consensus        73 g~~La~aSFD~t~~Iw~k~~~e-fecv~~lEGHEnEVK~Vaws~sG~--~LATCSRDKSVWiWe~deddEfec~aVL~~H  149 (312)
T KOG0645|consen   73 GRYLASASFDATVVIWKKEDGE-FECVATLEGHENEVKCVAWSASGN--YLATCSRDKSVWIWEIDEDDEFECIAVLQEH  149 (312)
T ss_pred             CcEEEEeeccceEEEeecCCCc-eeEEeeeeccccceeEEEEcCCCC--EEEEeeCCCeEEEEEecCCCcEEEEeeeccc
Confidence            9999999999999999877554 444568999999999999999999  8999999999999998854   466789999


Q ss_pred             CcCeEEEeeeecCCceEEEEecCCCcEEEEecCCC---CceeeecCCCCceEEEEEccCCCeeeecccccceeEEEecCC
Q 001415          509 EAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNL---GSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTT  585 (1082)
Q Consensus       509 ~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~---~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~i~~~~~~~~  585 (1082)
                      ...|..+.|+|..  .+|++++.|.+|++|+-...   ....++..+..                     .+.+++|++.
T Consensus       150 tqDVK~V~WHPt~--dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~---------------------TVW~~~F~~~  206 (312)
T KOG0645|consen  150 TQDVKHVIWHPTE--DLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHEN---------------------TVWSLAFDNI  206 (312)
T ss_pred             cccccEEEEcCCc--ceeEEeccCCeEEEEeecCCCCeeEEEEecCccc---------------------eEEEEEecCC
Confidence            9999999999987  49999999999999976521   12334444444                     4555556666


Q ss_pred             CCEEEEEeCCCeEEEEECCCcceEEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEecCCccceeeccccccccc
Q 001415          586 KNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDAS  665 (1082)
Q Consensus       586 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~  665 (1082)
                      |.++++++.|++++||...+.     +. ..+...+..++|.  ...|++++.|+.|+++.....               
T Consensus       207 G~rl~s~sdD~tv~Iw~~~~~-----~~-~~~sr~~Y~v~W~--~~~IaS~ggD~~i~lf~~s~~---------------  263 (312)
T KOG0645|consen  207 GSRLVSCSDDGTVSIWRLYTD-----LS-GMHSRALYDVPWD--NGVIASGGGDDAIRLFKESDS---------------  263 (312)
T ss_pred             CceEEEecCCcceEeeeeccC-----cc-hhcccceEeeeec--ccceEeccCCCEEEEEEecCC---------------
Confidence            668999999999999986522     11 1222357778888  558999999999999875432               


Q ss_pred             ccccccCCCCccccCCCCceeeeccCCceeEEEecccCCCCccccccccCcccccceeEEEEccC-CceeeecccCCeEE
Q 001415          666 RTSENSKNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNS-GNAILALASNAIHL  744 (1082)
Q Consensus       666 ~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~-~~~l~~~~~d~~i~  744 (1082)
                                    |++..+            +           .+.-....|...|+++.|+|. .++|++++.||.++
T Consensus       264 --------------~d~p~~------------~-----------l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~  306 (312)
T KOG0645|consen  264 --------------PDEPSW------------N-----------LLAKKEGAHEVDVNSVQWNPKVSNRLASGGDDGIVN  306 (312)
T ss_pred             --------------CCCchH------------H-----------HHHhhhcccccccceEEEcCCCCCceeecCCCceEE
Confidence                          000000            0           000001227789999999995 67899999999999


Q ss_pred             Eeec
Q 001415          745 LWKW  748 (1082)
Q Consensus       745 iw~~  748 (1082)
                      +|.+
T Consensus       307 ~W~l  310 (312)
T KOG0645|consen  307 FWEL  310 (312)
T ss_pred             EEEe
Confidence            9975

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=100.00  E-value=9.3e-33  Score=263.84  Aligned_cols=290  Identities=19%  Similarity=0.245  Sum_probs=243.6

Q ss_pred             ceeeecCCCCCceEEEEecCCCeEEEEEcCCCcEEEEEccccceeeeeceeeeccCCCCcccccccccCCCCceeEEEEe
Q 001415          350 TVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWS  429 (1082)
Q Consensus       350 ~~~~~~~h~~~v~~~~~spdg~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s  429 (1082)
                      ....+.+|+++|..+.|+|+|. ++|+|+.|..|.+|++.....-.                  ..+++|.++|..+.|.
T Consensus        39 p~m~l~gh~geI~~~~F~P~gs-~~aSgG~Dr~I~LWnv~gdceN~------------------~~lkgHsgAVM~l~~~   99 (338)
T KOG0265|consen   39 PIMLLPGHKGEIYTIKFHPDGS-CFASGGSDRAIVLWNVYGDCENF------------------WVLKGHSGAVMELHGM   99 (338)
T ss_pred             hhhhcCCCcceEEEEEECCCCC-eEeecCCcceEEEEeccccccce------------------eeeccccceeEeeeec
Confidence            3446677999999999999999 59999999999999975433221                  1478999999999999


Q ss_pred             cCCCeEEEEeCCCeEEEEEccCCceeeEEEEeeccccCeeEEEecCCCCceEEEEEeCCCcEEEEEccCCceeEEeecCC
Q 001415          430 PDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHE  509 (1082)
Q Consensus       430 pdg~~las~~~d~~v~iwd~~~~~~~~~~~~~~~h~~~V~~l~fs~dg~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~  509 (1082)
                      +|++.|++++.|.+|+.||+++|++.+   .+++|..-|+++.-+.-|.. ++.|++.|+++++||+++...++++. ..
T Consensus       100 ~d~s~i~S~gtDk~v~~wD~~tG~~~r---k~k~h~~~vNs~~p~rrg~~-lv~SgsdD~t~kl~D~R~k~~~~t~~-~k  174 (338)
T KOG0265|consen  100 RDGSHILSCGTDKTVRGWDAETGKRIR---KHKGHTSFVNSLDPSRRGPQ-LVCSGSDDGTLKLWDIRKKEAIKTFE-NK  174 (338)
T ss_pred             cCCCEEEEecCCceEEEEecccceeee---hhccccceeeecCccccCCe-EEEecCCCceEEEEeecccchhhccc-cc
Confidence            999999999999999999999999887   78899999999996666766 78999999999999999999998886 45


Q ss_pred             cCeEEEeeeecCCceEEEEecCCCcEEEEecCCCCceeeecCCCCceEEEEEccCCCeeeecccccceeEEEecCCCCEE
Q 001415          510 APVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRF  589 (1082)
Q Consensus       510 ~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~i~~~~~~~~~~~l  589 (1082)
                      -.+++++|....  ..+++|+-|+.|++||++.......+.+|.+.|+.+..+++|.                     ++
T Consensus       175 yqltAv~f~d~s--~qv~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs---------------------~l  231 (338)
T KOG0265|consen  175 YQLTAVGFKDTS--DQVISGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGS---------------------FL  231 (338)
T ss_pred             eeEEEEEecccc--cceeeccccCceeeeccccCcceEEeecccCceeeEEeccCCC---------------------cc
Confidence            678888886444  6899999999999999999889999999999888888888876                     78


Q ss_pred             EEEeCCCeEEEEECCC----cceEEEEecCCCCC--CcCeEEEcCCCCEEEEEECCCcEEEEEecCCccceeeccccccc
Q 001415          590 LAAGDDFSIKFWDMDS----VQLLTSIDADGGLP--ASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYD  663 (1082)
Q Consensus       590 ~~~~~dg~i~iwd~~~----~~~~~~~~~~~~~~--~i~~~~~s~dg~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~  663 (1082)
                      ++-+.|.++++||++.    .+++..+.++.+..  ....++|+|+++.+..|+.|..+++||.... ..+..       
T Consensus       232 lsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r-~~lyk-------  303 (338)
T KOG0265|consen  232 LSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSR-RILYK-------  303 (338)
T ss_pred             ccccccceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccCCCCccccccccceEEEeecccc-cEEEE-------
Confidence            8999999999999874    34577777665532  3457899999999999999999999997543 22211       


Q ss_pred             ccccccccCCCCccccCCCCceeeeccCCceeEEEecccCCCCccccccccCcccccceeEEEEccCCceeeecccCCeE
Q 001415          664 ASRTSENSKNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIH  743 (1082)
Q Consensus       664 ~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i  743 (1082)
                                                                       +|+  |.+.|..+.|+|....+.+++.|.+|
T Consensus       304 -------------------------------------------------lpG--h~gsvn~~~Fhp~e~iils~~sdk~i  332 (338)
T KOG0265|consen  304 -------------------------------------------------LPG--HYGSVNEVDFHPTEPIILSCSSDKTI  332 (338)
T ss_pred             -------------------------------------------------cCC--cceeEEEeeecCCCcEEEEeccCcee
Confidence                                                             233  78888999999999999999999888


Q ss_pred             EE
Q 001415          744 LL  745 (1082)
Q Consensus       744 ~i  745 (1082)
                      .+
T Consensus       333 ~l  334 (338)
T KOG0265|consen  333 YL  334 (338)
T ss_pred             Ee
Confidence            75

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=100.00  E-value=1.6e-33  Score=304.56  Aligned_cols=274  Identities=15%  Similarity=0.210  Sum_probs=235.2

Q ss_pred             cccceeEEEEccCCceeeecccCCeEEEeeccccccCCCCCcccccCccccCCCCcceeecccCCCCCCCCccEEEeecC
Q 001415          718 RATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKN  797 (1082)
Q Consensus       718 ~~~~i~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~d  797 (1082)
                      ....+.+..|++|+..++.+..|..|++|.+...+..+-                        +   +...         
T Consensus       377 t~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~l------------------------k---~~~~---------  420 (707)
T KOG0263|consen  377 TYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKL------------------------K---DASD---------  420 (707)
T ss_pred             cCCcceeEeecCCcchhhccccccEEEEEecchhhhccc------------------------c---chhh---------
Confidence            456789999999999999999999999997753221000                        0   0000         


Q ss_pred             CCeEEEee-CCeEEEEecCCCeeEEEECCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEecccceeeeeecccccCEEEE
Q 001415          798 DSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGL  876 (1082)
Q Consensus       798 g~~l~~~s-dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l  876 (1082)
                      ...+-+.+ |-.+.+.|-.+.....++.+|.++|..+.|+| +.++|+++++|++||+|.+.+..++...+||..+|+.+
T Consensus       421 l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GPVyg~sFsP-d~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV  499 (707)
T KOG0263|consen  421 LSNIDTESADVDVDMLDDDSSGTSRTLYGHSGPVYGCSFSP-DRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDV  499 (707)
T ss_pred             hccccccccchhhhhccccCCceeEEeecCCCceeeeeecc-cccceeeccCCcceeeeecccceeEEEecCCCcceeeE
Confidence            01111222 22356667777777888999999999999999 99999999999999999999999999999999999999


Q ss_pred             EEeCCCCEEEEEeCCCcEEEEEcCCcccccceeeeccCCCCCCCCCCcEEEEcCCCcEEEE-EecCeEEEEEccCcceee
Q 001415          877 AFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFETTKLECVK  955 (1082)
Q Consensus       877 ~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~-~~d~~i~iwd~~~~~~~~  955 (1082)
                      .|+|-|-|+||+|.|++.++|..+.     ...++++.+|.   ..|.++.|+|+..|+++ +.|.++++||+.+|..++
T Consensus       500 ~F~P~GyYFatas~D~tArLWs~d~-----~~PlRifaghl---sDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VR  571 (707)
T KOG0263|consen  500 QFAPRGYYFATASHDQTARLWSTDH-----NKPLRIFAGHL---SDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVR  571 (707)
T ss_pred             EecCCceEEEecCCCceeeeeeccc-----CCchhhhcccc---cccceEEECCcccccccCCCCceEEEEEcCCCcEEE
Confidence            9999999999999999999999988     45677888888   68999999999999999 689999999999999999


Q ss_pred             eeccCCCCcceeEEEEcCCCceEEEeecCCcEEEEecCCceeeeeeCCCeecCCCCCCCCceeeEEEEeCCCCCeEEEEe
Q 001415          956 QWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGL 1035 (1082)
Q Consensus       956 ~~~~~~h~~~i~~l~~s~dg~~l~t~s~dg~v~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~~~~~~~d~~~l~s~~ 1035 (1082)
                      .|.  ||.++|++++|||+|++|++|++||.|++||+.+++++..+.       +| ...++  ++.|+. ||..||+||
T Consensus       572 iF~--GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~-------~H-t~ti~--SlsFS~-dg~vLasgg  638 (707)
T KOG0263|consen  572 IFT--GHKGPVTALAFSPCGRYLASGDEDGLIKIWDLANGSLVKQLK-------GH-TGTIY--SLSFSR-DGNVLASGG  638 (707)
T ss_pred             Eec--CCCCceEEEEEcCCCceEeecccCCcEEEEEcCCCcchhhhh-------cc-cCcee--EEEEec-CCCEEEecC
Confidence            997  899999999999999999999999999999999999999888       77 33355  899998 799999999


Q ss_pred             cCCcEEEEccCCCC
Q 001415         1036 SDGGVHVFEPLESE 1049 (1082)
Q Consensus      1036 ~dg~v~vW~~~~~~ 1049 (1082)
                      .|++|++||+....
T Consensus       639 ~DnsV~lWD~~~~~  652 (707)
T KOG0263|consen  639 ADNSVRLWDLTKVI  652 (707)
T ss_pred             CCCeEEEEEchhhc
Confidence            99999999997766

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=100.00  E-value=2.1e-32  Score=261.47  Aligned_cols=294  Identities=21%  Similarity=0.333  Sum_probs=238.4

Q ss_pred             cccCCCCceeEEEEecCCCeEEEEeCCCeEEEEEccCCceeeEEEEeeccccCeeEEEecCCCCceEEEEEeCCCcEEEE
Q 001415          415 LVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVW  494 (1082)
Q Consensus       415 ~~~~h~~~V~~l~~spdg~~las~~~d~~v~iwd~~~~~~~~~~~~~~~h~~~V~~l~fs~dg~~~~l~s~s~d~~i~vw  494 (1082)
                      .+.+|++.|..+.|+|+|.+||+|+.|..|.+|++.....  -...+++|.+.|..+.|.+|+.  .++++|.|++|+.|
T Consensus        42 ~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdce--N~~~lkgHsgAVM~l~~~~d~s--~i~S~gtDk~v~~w  117 (338)
T KOG0265|consen   42 LLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCE--NFWVLKGHSGAVMELHGMRDGS--HILSCGTDKTVRGW  117 (338)
T ss_pred             hcCCCcceEEEEEECCCCCeEeecCCcceEEEEecccccc--ceeeeccccceeEeeeeccCCC--EEEEecCCceEEEE
Confidence            4789999999999999999999999999999999765432  2236789999999999999999  79999999999999


Q ss_pred             EccCCceeEEeecCCcCeEEEeeeecCCceEEEEecCCCcEEEEecCCCCceeeecCCCCceEEEEEccCCCeeeecccc
Q 001415          495 DATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRK  574 (1082)
Q Consensus       495 d~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~  574 (1082)
                      |+++|++++.+++|..-|+++.... .+-.++.+++.|+++++||++......++.. ..                    
T Consensus       118 D~~tG~~~rk~k~h~~~vNs~~p~r-rg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~-ky--------------------  175 (338)
T KOG0265|consen  118 DAETGKRIRKHKGHTSFVNSLDPSR-RGPQLVCSGSDDGTLKLWDIRKKEAIKTFEN-KY--------------------  175 (338)
T ss_pred             ecccceeeehhccccceeeecCccc-cCCeEEEecCCCceEEEEeecccchhhcccc-ce--------------------
Confidence            9999999999999999999998432 3336888899999999999997665554421 22                    


Q ss_pred             cceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEecCCccce
Q 001415          575 RSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLL  654 (1082)
Q Consensus       575 ~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~iwd~~~~~~~~  654 (1082)
                       .+.++.|...+..+++|+-|+.|++||++.+.....+.+|..  .|+.+..+++|.++.+-+.|.++++||.+.-..  
T Consensus       176 -qltAv~f~d~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh~D--tIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p--  250 (338)
T KOG0265|consen  176 -QLTAVGFKDTSDQVISGGIDNDIKVWDLRKNDGLYTLSGHAD--TITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAP--  250 (338)
T ss_pred             -eEEEEEecccccceeeccccCceeeeccccCcceEEeecccC--ceeeEEeccCCCccccccccceEEEEEecccCC--
Confidence             334445555555899999999999999999999999997766  899999999999999999999999999753300  


Q ss_pred             eecccccccccccccccCCCCccccCCCCceeeeccCCceeEEEecccCCCCccccccccCcccccceeEEEEccCCcee
Q 001415          655 RTFENLAYDASRTSENSKNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAI  734 (1082)
Q Consensus       655 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l  734 (1082)
                                                ..         ..+.++.                                    
T Consensus       251 --------------------------~~---------R~v~if~------------------------------------  259 (338)
T KOG0265|consen  251 --------------------------SQ---------RCVKIFQ------------------------------------  259 (338)
T ss_pred             --------------------------CC---------ceEEEee------------------------------------
Confidence                                      00         0000100                                    


Q ss_pred             eecccCCeEEEeeccccccCCCCCcccccCccccCCCCcceeecccCCCCCCCCccEEEeecCCCeEEEee-CCeEEEEe
Q 001415          735 LALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFN  813 (1082)
Q Consensus       735 ~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~l~~~s-dg~i~iwd  813 (1082)
                         +..   .                                       +.......++|+|+++.+.+|+ |..+++||
T Consensus       260 ---g~~---h---------------------------------------nfeknlL~cswsp~~~~i~ags~dr~vyvwd  294 (338)
T KOG0265|consen  260 ---GHI---H---------------------------------------NFEKNLLKCSWSPNGTKITAGSADRFVYVWD  294 (338)
T ss_pred             ---cch---h---------------------------------------hhhhhcceeeccCCCCccccccccceEEEee
Confidence               000   0                                       0122234568899999998887 78899999


Q ss_pred             cCCCeeEEEECCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEe
Q 001415          814 MMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYN  856 (1082)
Q Consensus       814 ~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd  856 (1082)
                      ..+...+..+.+|.+.|.+++|+| ...+|.+++.|.+|++=.
T Consensus       295 ~~~r~~lyklpGh~gsvn~~~Fhp-~e~iils~~sdk~i~lge  336 (338)
T KOG0265|consen  295 TTSRRILYKLPGHYGSVNEVDFHP-TEPIILSCSSDKTIYLGE  336 (338)
T ss_pred             cccccEEEEcCCcceeEEEeeecC-CCcEEEEeccCceeEeec
Confidence            999999999999999999999999 899999999999998743

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.3e-30  Score=282.36  Aligned_cols=449  Identities=15%  Similarity=0.252  Sum_probs=312.0

Q ss_pred             ccCCCCceeEEEEecCCCeEEEEeCCCeEEEEEccCCceeeEEEEeeccccCeeEEEecCCCCceEEEEEeCCCcEEEEE
Q 001415          416 VKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWD  495 (1082)
Q Consensus       416 ~~~h~~~V~~l~~spdg~~las~~~d~~v~iwd~~~~~~~~~~~~~~~h~~~V~~l~fs~dg~~~~l~s~s~d~~i~vwd  495 (1082)
                      +..-+..|..++|.|...+++++-..|.|++||..-+..+.   .+.+|.++|..++|.|.+.  +++|||+|..|+||+
T Consensus         5 fEskSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~---rFdeHdGpVRgv~FH~~qp--lFVSGGDDykIkVWn   79 (1202)
T KOG0292|consen    5 FESKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLID---RFDEHDGPVRGVDFHPTQP--LFVSGGDDYKIKVWN   79 (1202)
T ss_pred             hhcccccccceecCCCCCEEEEeecCceeeeehhhhhhHHh---hhhccCCccceeeecCCCC--eEEecCCccEEEEEe
Confidence            33456689999999999999999999999999999988777   7899999999999999999  899999999999999


Q ss_pred             ccCCceeEEeecCCcCeEEEeeeecCCceEEEEecCCCcEEEEecCCCCceeeecCCCCceEEEEEccCCCeeeeccccc
Q 001415          496 ATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKR  575 (1082)
Q Consensus       496 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~  575 (1082)
                      .++.+++.++.||.+-|..+.||+.-  .+|+++|.|.+|+||++.+..+...+++|.+.|.+..|.|...         
T Consensus        80 Yk~rrclftL~GHlDYVRt~~FHhey--PWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptED---------  148 (1202)
T KOG0292|consen   80 YKTRRCLFTLLGHLDYVRTVFFHHEY--PWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTED---------  148 (1202)
T ss_pred             cccceehhhhccccceeEEeeccCCC--ceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccc---------
Confidence            99999999999999999999998766  5999999999999999999999999999999888877776544         


Q ss_pred             ceeEEEecCCCCEEEEEeCCCeEEEEECCCcce---------------------------EEEEecCCCCCCcCeEEEcC
Q 001415          576 SLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQL---------------------------LTSIDADGGLPASPRIRFNK  628 (1082)
Q Consensus       576 ~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~---------------------------~~~~~~~~~~~~i~~~~~s~  628 (1082)
                                  .+++++-|.+|||||+..-+.                           +-..-..+|...|+.++|+|
T Consensus       149 ------------lIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhp  216 (1202)
T KOG0292|consen  149 ------------LIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHP  216 (1202)
T ss_pred             ------------eEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecC
Confidence                        799999999999999853211                           11111223333566666666


Q ss_pred             CCCEEEEEECCCcEEEEEecCCccceeecccccccccccccccCCCCccccCCCCceeeeccCCceeEEEecccCCCCcc
Q 001415          629 DGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQC  708 (1082)
Q Consensus       629 dg~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~  708 (1082)
                      .-.++++|++|..|++|.+...                                            +.|.+++      +
T Consensus       217 TlpliVSG~DDRqVKlWrmnet--------------------------------------------KaWEvDt------c  246 (1202)
T KOG0292|consen  217 TLPLIVSGADDRQVKLWRMNET--------------------------------------------KAWEVDT------C  246 (1202)
T ss_pred             CcceEEecCCcceeeEEEeccc--------------------------------------------cceeehh------h
Confidence            6666666666666666654322                                            2233321      1


Q ss_pred             ccccccCcccccceeEEEEccCCceeeecccCCeEEEeeccccccCCCCCcccccCccccCCCCcceeecccCCCCCCCC
Q 001415          709 RSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEA  788 (1082)
Q Consensus       709 ~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  788 (1082)
                             ++|.+.|.++.|+|..+.+++.+.|+.|++||+.....                      +...-   .....
T Consensus       247 -------rgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~----------------------v~tfr---rendR  294 (1202)
T KOG0292|consen  247 -------RGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTS----------------------VQTFR---RENDR  294 (1202)
T ss_pred             -------hcccCCcceEEecCccceeEecCCCccEEEEecccccc----------------------eeeee---ccCCe
Confidence                   34999999999999999999999999999998763221                      11110   14566


Q ss_pred             ccEEEeecCCCeEEEeeCCeEEEEecCCCeeEEEECCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEeccccee--eeee
Q 001415          789 VPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEV--KSKL  866 (1082)
Q Consensus       789 i~~l~~s~dg~~l~~~sdg~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~--~~~l  866 (1082)
                      ...++.+|..+++|+|.|+.+.+|.++.-++.            .+.+  ++.++.+-  |..|+-+|+.+.+-  +..+
T Consensus       295 FW~laahP~lNLfAAgHDsGm~VFkleRErpa------------~~v~--~n~LfYvk--d~~i~~~d~~t~~d~~v~~l  358 (1202)
T KOG0292|consen  295 FWILAAHPELNLFAAGHDSGMIVFKLERERPA------------YAVN--GNGLFYVK--DRFIRSYDLRTQKDTAVASL  358 (1202)
T ss_pred             EEEEEecCCcceeeeecCCceEEEEEcccCce------------EEEc--CCEEEEEc--cceEEeeeccccccceeEec
Confidence            78899999999999999988888887643332            3333  34444443  88999999988543  3444


Q ss_pred             ccc---ccCEEEEEEeCCCCEEEEE-eC-CCcEEEEEcCCcccccceeeeccCCCCCCCCCCcEEEEcCCCcEEEEE-ec
Q 001415          867 KGH---SKRITGLAFSHALNVLVSS-GA-DSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HE  940 (1082)
Q Consensus       867 ~~h---~~~V~~l~~s~d~~~l~s~-s~-Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~-~d  940 (1082)
                      +..   ..++.++.++|....+..+ .. .+.-.++.+...............+     .+ ....|-..+++.+.. ++
T Consensus       359 r~~g~~~~~~~smsYNpae~~vlics~~~n~~y~L~~ipk~~~~~~~~~~~~k~-----tG-~~a~fvarNrfavl~k~~  432 (1202)
T KOG0292|consen  359 RRPGTLWQPPRSLSYNPAENAVLICSNLDNGEYELVQIPKDSDGVSDGKDVKKG-----TG-EGALFVARNRFAVLDKSN  432 (1202)
T ss_pred             cCCCcccCCcceeeeccccCeEEEEeccCCCeEEEEEecCcccccCCchhhhcC-----CC-CceEEEEecceEEEEecC
Confidence            433   3678999999976654444 33 3444455554421111000000000     11 122232233333332 24


Q ss_pred             CeEEEEEccCcceeeeeccCCCCcceeEEEEcCCCceEEEeecCCcEEEEecCCceeeeeeC
Q 001415          941 TQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRIN 1002 (1082)
Q Consensus       941 ~~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~dg~~l~t~s~dg~v~vwd~~~~~~~~~~~ 1002 (1082)
                      ..+.+-++.+... +.+..   ...+..|-+..+|.+|+..  ...|.+||+..++.+..+.
T Consensus       433 ~~v~ik~l~N~vt-kkl~~---~~~~~~IF~ag~g~lll~~--~~~v~lfdvQq~~~~~si~  488 (1202)
T KOG0292|consen  433 EQVVIKNLKNKVT-KKLLL---PESTDDIFYAGTGNLLLRS--PDSVTLFDVQQKKKVGSIK  488 (1202)
T ss_pred             cceEEecccchhh-hcccC---cccccceeeccCccEEEEc--CCeEEEEEeecceEEEEEe
Confidence            4455544433221 22221   1234455566666665543  5679999999999888776

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=100.00  E-value=6.2e-30  Score=270.92  Aligned_cols=505  Identities=13%  Similarity=0.162  Sum_probs=342.5

Q ss_pred             CCceeEEEEecCCCeEEEEeCCCeEEEEEccCCceeeEEEEeeccc-cCeeEEEecCCCCceEEEEEeCCCcEEEEEccC
Q 001415          420 GVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHV-GGVNDIAFSHPNKQLCVITCGDDKTIKVWDATN  498 (1082)
Q Consensus       420 ~~~V~~l~~spdg~~las~~~d~~v~iwd~~~~~~~~~~~~~~~h~-~~V~~l~fs~dg~~~~l~s~s~d~~i~vwd~~~  498 (1082)
                      ..+|+++|||.+.+.||.+=.+|.|.||++..+=....  .+.++. ..|.+++|++.++   |.|.+.+|+|.-||+.+
T Consensus        25 Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~--vi~g~~drsIE~L~W~e~~R---LFS~g~sg~i~EwDl~~   99 (691)
T KOG2048|consen   25 PSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEP--VIHGPEDRSIESLAWAEGGR---LFSSGLSGSITEWDLHT   99 (691)
T ss_pred             ccceEEEEEeccCCceeeeccCCcEEEEccCCCceeeE--EEecCCCCceeeEEEccCCe---EEeecCCceEEEEeccc
Confidence            35899999999999999999999999999998643332  455654 5899999996665   89999999999999999


Q ss_pred             CceeEEeecCCcCeEEEeeeecCCceEEEEecCCCcEEEEecCCCCceeeecCCCCceEEEEEccCCCeeeeccccccee
Q 001415          499 GAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLG  578 (1082)
Q Consensus       499 ~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~i~  578 (1082)
                      ++.+..+....+.|++++.++..  ..++.|+.||.+..++............                   ....+.+.
T Consensus       100 lk~~~~~d~~gg~IWsiai~p~~--~~l~IgcddGvl~~~s~~p~~I~~~r~l-------------------~rq~sRvL  158 (691)
T KOG2048|consen  100 LKQKYNIDSNGGAIWSIAINPEN--TILAIGCDDGVLYDFSIGPDKITYKRSL-------------------MRQKSRVL  158 (691)
T ss_pred             CceeEEecCCCcceeEEEeCCcc--ceEEeecCCceEEEEecCCceEEEEeec-------------------ccccceEE
Confidence            99999999999999999998766  5899999999766666554332221111                   11123455


Q ss_pred             EEEecCCCCEEEEEeCCCeEEEEECCCcceEEEEecC-----C-CCCCcCeEEEcCCCCEEEEEECCCcEEEEEecCCcc
Q 001415          579 VVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDAD-----G-GLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIR  652 (1082)
Q Consensus       579 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-----~-~~~~i~~~~~s~dg~~l~~~~~dg~i~iwd~~~~~~  652 (1082)
                      ++.|+|++..+++|+.||.|++||..++..+......     . ...-|.++.|-.++ .|++|...|+|.+||...+ .
T Consensus       159 slsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~-tI~sgDS~G~V~FWd~~~g-T  236 (691)
T KOG2048|consen  159 SLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDS-TIASGDSAGTVTFWDSIFG-T  236 (691)
T ss_pred             EEEecCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecC-cEEEecCCceEEEEcccCc-c
Confidence            5666666668999999999999999998876632211     1 11224555555444 5777888888888887666 3


Q ss_pred             ceeecccccccccccccccCCCCccccCCCCceeeeccCCceeEEEecccCCCCccccccccCcccccceeEEEEccCCc
Q 001415          653 LLRTFENLAYDASRTSENSKNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGN  732 (1082)
Q Consensus       653 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~  732 (1082)
                      +.+.+..                                                          |...|.+++..+++.
T Consensus       237 LiqS~~~----------------------------------------------------------h~adVl~Lav~~~~d  258 (691)
T KOG2048|consen  237 LIQSHSC----------------------------------------------------------HDADVLALAVADNED  258 (691)
T ss_pred             hhhhhhh----------------------------------------------------------hhcceeEEEEcCCCC
Confidence            3222211                                                          677788888888888


Q ss_pred             eeeecccCCeEEEeeccccccCCCCCcccccCccccCCCCcceeecccCCCCCCCCccEEEeecCCCeEEEee-CCeEEE
Q 001415          733 AILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISL  811 (1082)
Q Consensus       733 ~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~l~~~s-dg~i~i  811 (1082)
                      ++++++.|+.+..|........             |-..        .....|...+++++..++  .+++|+ |..+.+
T Consensus       259 ~vfsaGvd~~ii~~~~~~~~~~-------------wv~~--------~~r~~h~hdvrs~av~~~--~l~sgG~d~~l~i  315 (691)
T KOG2048|consen  259 RVFSAGVDPKIIQYSLTTNKSE-------------WVIN--------SRRDLHAHDVRSMAVIEN--ALISGGRDFTLAI  315 (691)
T ss_pred             eEEEccCCCceEEEEecCCccc-------------eeee--------ccccCCcccceeeeeecc--eEEecceeeEEEE
Confidence            8999999988877755432110             1111        011238899999999887  666665 566666


Q ss_pred             EecCCCeeEEEECCCCCCeeE-EEEecCCCcEEEEEeCCCcEEEEeccccee---------eeeecccccCEEEEEEeCC
Q 001415          812 FNMMTFKTMATFMPPPPAATF-LAFHPQDNNIIAIGMDDSSIQIYNVRVDEV---------KSKLKGHSKRITGLAFSHA  881 (1082)
Q Consensus       812 wd~~~~~~~~~~~~~~~~v~~-l~~sp~~~~~lasg~~dg~v~iwd~~~~~~---------~~~l~~h~~~V~~l~~s~d  881 (1082)
                      -.....+...........-.+ +...|  .++|..--.+..+.+|.+.+...         .+........|.+.+.|||
T Consensus       316 ~~s~~~~~~~h~~~~~~p~~~~v~~a~--~~~L~~~w~~h~v~lwrlGS~~~~g~~~~~~Llkl~~k~~~nIs~~aiSPd  393 (691)
T KOG2048|consen  316 CSSREFKNMDHRQKNLFPASDRVSVAP--ENRLLVLWKAHGVDLWRLGSVILQGEYNYIHLLKLFTKEKENISCAAISPD  393 (691)
T ss_pred             ccccccCchhhhccccccccceeecCc--cceEEEEeccccccceeccCcccccccChhhheeeecCCccceeeeccCCC
Confidence            544331111111100011111 23333  34555555577888888766511         1112223456999999999


Q ss_pred             CCEEEEEeCCCcEEEEEcCCcccccceeeeccCCCCCCCCCCcEEEEcCCCcEEEE-E-ecCeEEEEEccCcc--eeeee
Q 001415          882 LNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-V-HETQLAIFETTKLE--CVKQW  957 (1082)
Q Consensus       882 ~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~-~-~d~~i~iwd~~~~~--~~~~~  957 (1082)
                      |++++.+.-. .+++|.++.........+.....   .......+.|+-|+..++. + ....+.+++..+..  .+..+
T Consensus       394 g~~Ia~st~~-~~~iy~L~~~~~vk~~~v~~~~~---~~~~a~~i~ftid~~k~~~~s~~~~~le~~el~~ps~kel~~~  469 (691)
T KOG2048|consen  394 GNLIAISTVS-RTKIYRLQPDPNVKVINVDDVPL---ALLDASAISFTIDKNKLFLVSKNIFSLEEFELETPSFKELKSI  469 (691)
T ss_pred             CCEEEEeecc-ceEEEEeccCcceeEEEeccchh---hhccceeeEEEecCceEEEEecccceeEEEEecCcchhhhhcc
Confidence            9999987643 47899887733222222211111   1135678899988887776 4 56778888776543  33333


Q ss_pred             ccCCCCcceeEEEEcCCCceEEEeecCCcEEEEecCCceeeeeeCCCeecCCCCCCCCceeeEEEEeCCCCCeEEEEecC
Q 001415          958 VPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSD 1037 (1082)
Q Consensus       958 ~~~~h~~~i~~l~~s~dg~~l~t~s~dg~v~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~~~~~~~d~~~l~s~~~d 1037 (1082)
                      ...+-...|..+..||||.|||+.+.+|.|.+|++.+++......       .   -....+++.|+|.+.+.|+.+..|
T Consensus       470 ~~~~~~~~I~~l~~SsdG~yiaa~~t~g~I~v~nl~~~~~~~l~~-------r---ln~~vTa~~~~~~~~~~lvvats~  539 (691)
T KOG2048|consen  470 QSQAKCPSISRLVVSSDGNYIAAISTRGQIFVYNLETLESHLLKV-------R---LNIDVTAAAFSPFVRNRLVVATSN  539 (691)
T ss_pred             ccccCCCcceeEEEcCCCCEEEEEeccceEEEEEcccceeecchh-------c---cCcceeeeeccccccCcEEEEecC
Confidence            333346789999999999999999999999999999988765432       0   113456888997777889999999


Q ss_pred             CcEEEEccCCCC
Q 001415         1038 GGVHVFEPLESE 1049 (1082)
Q Consensus      1038 g~v~vW~~~~~~ 1049 (1082)
                      +.|.-+|++...
T Consensus       540 nQv~efdi~~~~  551 (691)
T KOG2048|consen  540 NQVFEFDIEARN  551 (691)
T ss_pred             CeEEEEecchhh
Confidence            999999994443

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=100.00  E-value=3.7e-29  Score=265.03  Aligned_cols=500  Identities=14%  Similarity=0.149  Sum_probs=358.9

Q ss_pred             CCCCceEEEEecCCCeEEEEEcCCCcEEEEEccccceeeeeceeeeccCCCCcccccccccCCCCceeEEEEecCCCeEE
Q 001415          357 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFG  436 (1082)
Q Consensus       357 h~~~v~~~~~spdg~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la  436 (1082)
                      ...+|.|+|||.+.+. ||.+-.||.|.||++..+=....                 .+..+....|.+++|+ +|..|.
T Consensus        24 ~Ps~I~slA~s~kS~~-lAvsRt~g~IEiwN~~~~w~~~~-----------------vi~g~~drsIE~L~W~-e~~RLF   84 (691)
T KOG2048|consen   24 KPSEIVSLAYSHKSNQ-LAVSRTDGNIEIWNLSNNWFLEP-----------------VIHGPEDRSIESLAWA-EGGRLF   84 (691)
T ss_pred             eccceEEEEEeccCCc-eeeeccCCcEEEEccCCCceeeE-----------------EEecCCCCceeeEEEc-cCCeEE
Confidence            3578999999999995 99999999999999987543321                 1223446789999999 566777


Q ss_pred             EEeCCCeEEEEEccCCceeeEEEEeeccccCeeEEEecCCCCceEEEEEeCCCcEEEEEccCCceeE--EeecCCcCeEE
Q 001415          437 VAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQY--IFEGHEAPVYS  514 (1082)
Q Consensus       437 s~~~d~~v~iwd~~~~~~~~~~~~~~~h~~~V~~l~fs~dg~~~~l~s~s~d~~i~vwd~~~~~~~~--~~~~h~~~v~~  514 (1082)
                      +.+.+|.|.-||+.+++...   .+....+.|++++.+|.+.  .++.|++||.+..+++..++...  .+...+++|.+
T Consensus        85 S~g~sg~i~EwDl~~lk~~~---~~d~~gg~IWsiai~p~~~--~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLs  159 (691)
T KOG2048|consen   85 SSGLSGSITEWDLHTLKQKY---NIDSNGGAIWSIAINPENT--ILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLS  159 (691)
T ss_pred             eecCCceEEEEecccCceeE---EecCCCcceeEEEeCCccc--eEEeecCCceEEEEecCCceEEEEeecccccceEEE
Confidence            88899999999999988665   6777889999999999998  78999999988888888777654  34455689999


Q ss_pred             EeeeecCCceEEEEecCCCcEEEEecCCCCceeeecC--------CCCceEEEEEccCCCeeeecccccceeEEEecCCC
Q 001415          515 VCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEA--------PGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTK  586 (1082)
Q Consensus       515 ~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~--------~~~~v~~~~~s~d~~~~~~~~~~~~i~~~~~~~~~  586 (1082)
                      +.|+++.  ..|++|+.||.|++||...+......+.        ...-|.++.|-.++                     
T Consensus       160 lsw~~~~--~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~---------------------  216 (691)
T KOG2048|consen  160 LSWNPTG--TKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDS---------------------  216 (691)
T ss_pred             EEecCCc--cEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecC---------------------
Confidence            9987654  6799999999999999998776652211        11123444444443                     


Q ss_pred             CEEEEEeCCCeEEEEECCCcceEEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEecCCccceeecccccccccc
Q 001415          587 NRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASR  666 (1082)
Q Consensus       587 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~  666 (1082)
                       .+++|...|+|.+||...+.+++....+..  .|.+++..+++.++++++.|+.|.-|...+....             
T Consensus       217 -tI~sgDS~G~V~FWd~~~gTLiqS~~~h~a--dVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~-------------  280 (691)
T KOG2048|consen  217 -TIASGDSAGTVTFWDSIFGTLIQSHSCHDA--DVLALAVADNEDRVFSAGVDPKIIQYSLTTNKSE-------------  280 (691)
T ss_pred             -cEEEecCCceEEEEcccCcchhhhhhhhhc--ceeEEEEcCCCCeEEEccCCCceEEEEecCCccc-------------
Confidence             599999999999999999999999887765  6999999999999999999999988876655210             


Q ss_pred             cccccCCCCccccCCCCceeeeccCCceeEEEecccCCCCccccccccCcccccceeEEEEccCCceeeecccCCeEEEe
Q 001415          667 TSENSKNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLW  746 (1082)
Q Consensus       667 ~~~~~~~~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iw  746 (1082)
                                                    |-...            ....|...+.+++..++  .+++++.|..+.+-
T Consensus       281 ------------------------------wv~~~------------~r~~h~hdvrs~av~~~--~l~sgG~d~~l~i~  316 (691)
T KOG2048|consen  281 ------------------------------WVINS------------RRDLHAHDVRSMAVIEN--ALISGGRDFTLAIC  316 (691)
T ss_pred             ------------------------------eeeec------------cccCCcccceeeeeecc--eEEecceeeEEEEc
Confidence                                          11000            00127778888888877  78888989888764


Q ss_pred             eccccccCCCCCcccccCccccCCCCcceeecccCCCCCCCCc-cEEEeecCCCeEEEeeCCeEEEEecCCCe-------
Q 001415          747 KWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAV-PCFALSKNDSYVMSASGGKISLFNMMTFK-------  818 (1082)
Q Consensus       747 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i-~~l~~s~dg~~l~~~sdg~i~iwd~~~~~-------  818 (1082)
                      ......              ..+-.   ..        ...+- ..+...|..++++.-....+.+|.+.+..       
T Consensus       317 ~s~~~~--------------~~~h~---~~--------~~~p~~~~v~~a~~~~L~~~w~~h~v~lwrlGS~~~~g~~~~  371 (691)
T KOG2048|consen  317 SSREFK--------------NMDHR---QK--------NLFPASDRVSVAPENRLLVLWKAHGVDLWRLGSVILQGEYNY  371 (691)
T ss_pred             cccccC--------------chhhh---cc--------ccccccceeecCccceEEEEeccccccceeccCcccccccCh
Confidence            322100              00000   00        00001 11333455555555556778888876541       


Q ss_pred             --eEEEECCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEecccceee-----eeecccccCEEEEEEeCCCCEEEEEe-C
Q 001415          819 --TMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVK-----SKLKGHSKRITGLAFSHALNVLVSSG-A  890 (1082)
Q Consensus       819 --~~~~~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~-----~~l~~h~~~V~~l~~s~d~~~l~s~s-~  890 (1082)
                        ..+........|.+.+.|| +|++||.+. -..++||.++....+     .......-.+..+.|+-|+..++.++ .
T Consensus       372 ~~Llkl~~k~~~nIs~~aiSP-dg~~Ia~st-~~~~~iy~L~~~~~vk~~~v~~~~~~~~~a~~i~ftid~~k~~~~s~~  449 (691)
T KOG2048|consen  372 IHLLKLFTKEKENISCAAISP-DGNLIAIST-VSRTKIYRLQPDPNVKVINVDDVPLALLDASAISFTIDKNKLFLVSKN  449 (691)
T ss_pred             hhheeeecCCccceeeeccCC-CCCEEEEee-ccceEEEEeccCcceeEEEeccchhhhccceeeEEEecCceEEEEecc
Confidence              1222233455699999999 999999876 346888888752222     11223334677889999998888888 6


Q ss_pred             CCcEEEEEcCCcccccceeeeccCCCCCCCCCCcEEEEcCCCcEEEE-EecCeEEEEEccCcceeeeeccCCCCcceeEE
Q 001415          891 DSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFETTKLECVKQWVPRESSAPITHA  969 (1082)
Q Consensus       891 Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~h~~~i~~l  969 (1082)
                      +..+.+.++++.......-....    .....|..++.||||.++|+ +..+.|.+|++++++......  .-...|+.+
T Consensus       450 ~~~le~~el~~ps~kel~~~~~~----~~~~~I~~l~~SsdG~yiaa~~t~g~I~v~nl~~~~~~~l~~--rln~~vTa~  523 (691)
T KOG2048|consen  450 IFSLEEFELETPSFKELKSIQSQ----AKCPSISRLVVSSDGNYIAAISTRGQIFVYNLETLESHLLKV--RLNIDVTAA  523 (691)
T ss_pred             cceeEEEEecCcchhhhhccccc----cCCCcceeEEEcCCCCEEEEEeccceEEEEEcccceeecchh--ccCcceeee
Confidence            67788888887543322222211    23367999999999999999 788999999999887654432  114789999


Q ss_pred             EEcC-CCceEEEeecCCcEEEEecCCce
Q 001415          970 TFSC-DSQLVYACFLDATVCVFSAANLK  996 (1082)
Q Consensus       970 ~~s~-dg~~l~t~s~dg~v~vwd~~~~~  996 (1082)
                      +|+| +...|+.+..|+.|.=||++..+
T Consensus       524 ~~~~~~~~~lvvats~nQv~efdi~~~~  551 (691)
T KOG2048|consen  524 AFSPFVRNRLVVATSNNQVFEFDIEARN  551 (691)
T ss_pred             eccccccCcEEEEecCCeEEEEecchhh
Confidence            9995 56678889999999999995544

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=100.00  E-value=2.8e-32  Score=265.86  Aligned_cols=287  Identities=16%  Similarity=0.304  Sum_probs=244.9

Q ss_pred             cccCCCCceeEEEEecCCCeEEEEeCCCeEEEEEccCCceeeEEEEeeccccCeeEEEecCCCCceEEEEEeCCCcEEEE
Q 001415          415 LVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVW  494 (1082)
Q Consensus       415 ~~~~h~~~V~~l~~spdg~~las~~~d~~v~iwd~~~~~~~~~~~~~~~h~~~V~~l~fs~dg~~~~l~s~s~d~~i~vw  494 (1082)
                      ++.+|.+.|.|+++.|-..++++|+.|++++|||+.+|+...   ++.||...|..+++|+--.  |+++++.|+.|+.|
T Consensus       146 Vi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~Lkl---tltGhi~~vr~vavS~rHp--YlFs~gedk~VKCw  220 (460)
T KOG0285|consen  146 VISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKL---TLTGHIETVRGVAVSKRHP--YLFSAGEDKQVKCW  220 (460)
T ss_pred             hhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEE---eecchhheeeeeeecccCc--eEEEecCCCeeEEE
Confidence            588999999999999999999999999999999999998655   8999999999999999888  89999999999999


Q ss_pred             EccCCceeEEeecCCcCeEEEeeeecCCceEEEEecCCCcEEEEecCCCCceeeecCCCCceEEEEEccCCCeeeecccc
Q 001415          495 DATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRK  574 (1082)
Q Consensus       495 d~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~  574 (1082)
                      |++..+.++.+.||-..|.++..+|.-+  .                                                 
T Consensus       221 DLe~nkvIR~YhGHlS~V~~L~lhPTld--v-------------------------------------------------  249 (460)
T KOG0285|consen  221 DLEYNKVIRHYHGHLSGVYCLDLHPTLD--V-------------------------------------------------  249 (460)
T ss_pred             echhhhhHHHhccccceeEEEeccccce--e-------------------------------------------------
Confidence            9999999999999999999999887653  3                                                 


Q ss_pred             cceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEecCCccce
Q 001415          575 RSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLL  654 (1082)
Q Consensus       575 ~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~iwd~~~~~~~~  654 (1082)
                                    +++|+.|.++++||+++...+..+.+|..  +|.++.+.|-...+++|+.|++|++||+..++...
T Consensus       250 --------------l~t~grDst~RvWDiRtr~~V~~l~GH~~--~V~~V~~~~~dpqvit~S~D~tvrlWDl~agkt~~  313 (460)
T KOG0285|consen  250 --------------LVTGGRDSTIRVWDIRTRASVHVLSGHTN--PVASVMCQPTDPQVITGSHDSTVRLWDLRAGKTMI  313 (460)
T ss_pred             --------------EEecCCcceEEEeeecccceEEEecCCCC--cceeEEeecCCCceEEecCCceEEEeeeccCceeE
Confidence                          55555666666777777777777776655  78899999877789999999999999987762110


Q ss_pred             eecccccccccccccccCCCCccccCCCCceeeeccCCceeEEEecccCCCCccccccccCcccccceeEEEEccCCcee
Q 001415          655 RTFENLAYDASRTSENSKNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAI  734 (1082)
Q Consensus       655 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l  734 (1082)
                       .+                                                                             
T Consensus       314 -tl-----------------------------------------------------------------------------  315 (460)
T KOG0285|consen  314 -TL-----------------------------------------------------------------------------  315 (460)
T ss_pred             -ee-----------------------------------------------------------------------------
Confidence             00                                                                             


Q ss_pred             eecccCCeEEEeeccccccCCCCCcccccCccccCCCCcceeecccCCCCCCCCccEEEeecCCCeEEEeeCCeEEEEec
Q 001415          735 LALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNM  814 (1082)
Q Consensus       735 ~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~l~~~sdg~i~iwd~  814 (1082)
                                                                      ..|...+.+++.+|....+|+++.+.|+-|++
T Consensus       316 ------------------------------------------------t~hkksvral~lhP~e~~fASas~dnik~w~~  347 (460)
T KOG0285|consen  316 ------------------------------------------------THHKKSVRALCLHPKENLFASASPDNIKQWKL  347 (460)
T ss_pred             ------------------------------------------------ecccceeeEEecCCchhhhhccCCccceeccC
Confidence                                                            01677788888999988999999899999999


Q ss_pred             CCCeeEEEECCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEecccceeeeeec--------ccccCEEEEEEeCCCCEEE
Q 001415          815 MTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLK--------GHSKRITGLAFSHALNVLV  886 (1082)
Q Consensus       815 ~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~--------~h~~~V~~l~~s~d~~~l~  886 (1082)
                      ..+..+..+.+|..-+.+++... |+ ++++|+++|.+..||.++|-..+.+.        .....|.+.+|...|..|+
T Consensus       348 p~g~f~~nlsgh~~iintl~~ns-D~-v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg~rli  425 (460)
T KOG0285|consen  348 PEGEFLQNLSGHNAIINTLSVNS-DG-VLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKTGSRLI  425 (460)
T ss_pred             Cccchhhccccccceeeeeeecc-Cc-eEEEcCCceEEEEEecCcCcccccccccccCCccccccceeEEeecccCceEE
Confidence            99999999999999999999998 55 78889999999999999885544432        1235689999999999999


Q ss_pred             EEeCCCcEEEEEcCC
Q 001415          887 SSGADSQLCVWSSDG  901 (1082)
Q Consensus       887 s~s~Dg~i~vwd~~~  901 (1082)
                      +|..|.+|++|.-+.
T Consensus       426 t~eadKtIk~~keDe  440 (460)
T KOG0285|consen  426 TGEADKTIKMYKEDE  440 (460)
T ss_pred             eccCCcceEEEeccc
Confidence            999999999997655

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=100.00  E-value=2.7e-30  Score=263.26  Aligned_cols=426  Identities=18%  Similarity=0.243  Sum_probs=307.1

Q ss_pred             CCCCceEEEEecC--CCeEEEE-EcCCCcEEEEEccccceeeeeceeeeccCCCCcccccccccCCCCceeEEEEecCCC
Q 001415          357 QGSSPMSMDFHPV--QQTLLLV-GTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGS  433 (1082)
Q Consensus       357 h~~~v~~~~~spd--g~~llas-gs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~  433 (1082)
                      -+..|+|++||+-  |..|++. -+.+..+.|||+..+..+..                   .+..+..|...+|.|.+.
T Consensus       153 f~~GV~~vaFsk~~~G~~l~~vD~s~~h~lSVWdWqk~~~~~~-------------------vk~sne~v~~a~FHPtd~  213 (626)
T KOG2106|consen  153 FDRGVTCVAFSKINGGSLLCAVDDSNPHMLSVWDWQKKAKLGP-------------------VKTSNEVVFLATFHPTDP  213 (626)
T ss_pred             ccccceeeeecccCCCceEEEecCCCccccchhhchhhhccCc-------------------ceeccceEEEEEeccCCC
Confidence            5678999999984  4444443 23356689999988776653                   344566889999999666


Q ss_pred             eEEEEeCCCeEEEEEccCCceeeEEEEeeccc-cCeeEEEecCCCCceEEEEEeCCCcEEEEEccCCceeEEeecCCcCe
Q 001415          434 LFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHV-GGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPV  512 (1082)
Q Consensus       434 ~las~~~d~~v~iwd~~~~~~~~~~~~~~~h~-~~V~~l~fs~dg~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v  512 (1082)
                      -|......+.+..|+++++...+....++.++ ..|.|++|.++|+   +++|..+|.|.||+..+.+..+....|.+.|
T Consensus       214 nliit~Gk~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~engd---viTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv  290 (626)
T KOG2106|consen  214 NLIITCGKGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENGD---VITGDSGGNILIWSKGTNRISKQVHAHDGGV  290 (626)
T ss_pred             cEEEEeCCceEEEEEccCCceEEEeeccccccceEEEEEEEcCCCC---EEeecCCceEEEEeCCCceEEeEeeecCCce
Confidence            66655567889999999998877666666654 5799999999999   8999999999999998888777777999999


Q ss_pred             EEEeeeecCCceEEEEecCCCcEEEEecCCCCceeee--cCCCCceEEEEEc-------------------cCCCeeeec
Q 001415          513 YSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDY--EAPGRWCTTMAYS-------------------ADGTRTYQG  571 (1082)
Q Consensus       513 ~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~--~~~~~~v~~~~~s-------------------~d~~~~~~~  571 (1082)
                      .+++...++   .|++|+.|+.|..|| +..+.....  ....+.++.++-.                   ..-..+..+
T Consensus       291 ~~L~~lr~G---tllSGgKDRki~~Wd-~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~g  366 (626)
T KOG2106|consen  291 FSLCMLRDG---TLLSGGKDRKIILWD-DNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQG  366 (626)
T ss_pred             EEEEEecCc---cEeecCccceEEecc-ccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEe
Confidence            999986544   577799999999998 333333322  2222334333211                   111133444


Q ss_pred             ccccceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEecCCc
Q 001415          572 FRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGI  651 (1082)
Q Consensus       572 ~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~iwd~~~~~  651 (1082)
                      |.+ ....++.+|+.+++++++.|+.+++|+  ..+++.+.....   ++.++.|+|.| .++.|+..|...+.|.++. 
T Consensus       367 h~d-elwgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt~~~~d---~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~-  438 (626)
T KOG2106|consen  367 HGD-ELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWTKIIED---PAECADFHPSG-VVAVGTATGRWFVLDTETQ-  438 (626)
T ss_pred             ccc-ceeeEEcCCChhheeeccCcceEEEcc--CCceeEEEEecC---ceeEeeccCcc-eEEEeeccceEEEEecccc-
Confidence            444 677788888888888888888888888  445544443322   46788888888 8888888888888887653 


Q ss_pred             cceeecccccccccccccccCCCCccccCCCCceeeeccCCceeEEEecccCCCCccccccccCcccccceeEEEEccCC
Q 001415          652 RLLRTFENLAYDASRTSENSKNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSG  731 (1082)
Q Consensus       652 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~  731 (1082)
                      .++....                                                           ...+++.+.|+|+|
T Consensus       439 ~lv~~~~-----------------------------------------------------------d~~~ls~v~ysp~G  459 (626)
T KOG2106|consen  439 DLVTIHT-----------------------------------------------------------DNEQLSVVRYSPDG  459 (626)
T ss_pred             eeEEEEe-----------------------------------------------------------cCCceEEEEEcCCC
Confidence            2211110                                                           34567888888999


Q ss_pred             ceeeecccCCeEEEeeccccccCCCCCcccccCccccCCCCcceeecccCCCCCCCCccEEEeecCCCeEEEee-CCeEE
Q 001415          732 NAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKIS  810 (1082)
Q Consensus       732 ~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~l~~~s-dg~i~  810 (1082)
                      .+++.++.|+.|++|.++...                     ......-.  .+..+|+.+.||+|++++.+-+ |-.|.
T Consensus       460 ~~lAvgs~d~~iyiy~Vs~~g---------------------~~y~r~~k--~~gs~ithLDwS~Ds~~~~~~S~d~eiL  516 (626)
T KOG2106|consen  460 AFLAVGSHDNHIYIYRVSANG---------------------RKYSRVGK--CSGSPITHLDWSSDSQFLVSNSGDYEIL  516 (626)
T ss_pred             CEEEEecCCCeEEEEEECCCC---------------------cEEEEeee--ecCceeEEeeecCCCceEEeccCceEEE
Confidence            888888888888888765322                     11111111  1458899999999999999987 56799


Q ss_pred             EEecCCCeeEEEE------------------CCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEecccce---eeeeeccc
Q 001415          811 LFNMMTFKTMATF------------------MPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDE---VKSKLKGH  869 (1082)
Q Consensus       811 iwd~~~~~~~~~~------------------~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~---~~~~l~~h  869 (1082)
                      .|.....+.....                  ..+...+..++-+. +.+++|+|.+.|.|++|...--+   ...+..+|
T Consensus       517 yW~~~~~~~~ts~kDvkW~t~~c~lGF~v~g~s~~t~i~a~~rs~-~~~~lA~gdd~g~v~lf~yPc~s~rA~~he~~gh  595 (626)
T KOG2106|consen  517 YWKPSECKQITSVKDVKWATYTCTLGFEVFGGSDGTDINAVARSH-CEKLLASGDDFGKVHLFSYPCSSPRAPSHEYGGH  595 (626)
T ss_pred             EEccccCcccceecceeeeeeEEEEEEEEecccCCchHHHhhhhh-hhhhhhccccCceEEEEccccCCCcccceeeccc
Confidence            9954432221111                  12334466677777 88899999999999999876433   34567799


Q ss_pred             ccCEEEEEEeCCCCEEEEEeCCCcEEEEEc
Q 001415          870 SKRITGLAFSHALNVLVSSGADSQLCVWSS  899 (1082)
Q Consensus       870 ~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~  899 (1082)
                      ++-|++++|..+...|++.+.|..|..|++
T Consensus       596 s~~vt~V~Fl~~d~~li~tg~D~Si~qW~l  625 (626)
T KOG2106|consen  596 SSHVTNVAFLCKDSHLISTGKDTSIMQWRL  625 (626)
T ss_pred             cceeEEEEEeeCCceEEecCCCceEEEEEe
Confidence            999999999999889998889999999986

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=100.00  E-value=3.7e-33  Score=277.16  Aligned_cols=284  Identities=19%  Similarity=0.305  Sum_probs=242.1

Q ss_pred             CCCCceEEEEecCCCeEEEEEcCCCcEEEEEccccceeeeeceeeeccCCCCcccccccccCCCCceeEEEEecCCCeEE
Q 001415          357 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFG  436 (1082)
Q Consensus       357 h~~~v~~~~~spdg~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la  436 (1082)
                      -+..|..+.|.|+|++ |++|+..|.+.+|+..+-      +|.             .++..|..+|+++.||++|.+++
T Consensus        95 vkc~V~~v~WtPeGRR-Lltgs~SGEFtLWNg~~f------nFE-------------tilQaHDs~Vr~m~ws~~g~wmi  154 (464)
T KOG0284|consen   95 VKCPVNVVRWTPEGRR-LLTGSQSGEFTLWNGTSF------NFE-------------TILQAHDSPVRTMKWSHNGTWMI  154 (464)
T ss_pred             cccceeeEEEcCCCce-eEeecccccEEEecCcee------eHH-------------HHhhhhcccceeEEEccCCCEEE
Confidence            4678999999999997 899999999999996321      111             14789999999999999999999


Q ss_pred             EEeCCCeEEEEEccCCceeeEEEEeecc-ccCeeEEEecCCCCceEEEEEeCCCcEEEEEccCCceeEEeecCCcCeEEE
Q 001415          437 VAYSRHIVQIYSYHGGDEVRQHLEIDAH-VGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSV  515 (1082)
Q Consensus       437 s~~~d~~v~iwd~~~~~~~~~~~~~~~h-~~~V~~l~fs~dg~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~  515 (1082)
                      +|+.+|.|++|+..-....    .+.+| ...|++++|||++.  .++++++||+|+|||....+.-..+.||.-.|.++
T Consensus       155 SgD~gG~iKyWqpnmnnVk----~~~ahh~eaIRdlafSpnDs--kF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksv  228 (464)
T KOG0284|consen  155 SGDKGGMIKYWQPNMNNVK----IIQAHHAEAIRDLAFSPNDS--KFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSV  228 (464)
T ss_pred             EcCCCceEEecccchhhhH----HhhHhhhhhhheeccCCCCc--eeEEecCCCeEEEEeccCCchhheeccCCCCccee
Confidence            9999999999998754322    34454 48999999999888  69999999999999999999999999999999999


Q ss_pred             eeeecCCceEEEEecCCCcEEEEecCCCCceeeecCCCCceEEEEEccCCCeeeecccccceeEEEecCCCCEEEEEeCC
Q 001415          516 CPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDD  595 (1082)
Q Consensus       516 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d  595 (1082)
                      .|+|..  .+|++++.|..|++||.+++.++.++..|...|..+.|++++.                     +|++++.|
T Consensus       229 dWHP~k--gLiasgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N---------------------~Llt~skD  285 (464)
T KOG0284|consen  229 DWHPTK--GLIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGN---------------------WLLTGSKD  285 (464)
T ss_pred             ccCCcc--ceeEEccCCceeEeecCCCcchhhhhhhccceEEEEEEcCCCC---------------------eeEEccCC
Confidence            999877  5899999999999999999999999998888888877777665                     89999999


Q ss_pred             CeEEEEECCCcceEEEEecCCCCCCcCeEEEcC-CCCEEEEEECCCcEEEEEecCCccceeecccccccccccccccCCC
Q 001415          596 FSIKFWDMDSVQLLTSIDADGGLPASPRIRFNK-DGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKNG  674 (1082)
Q Consensus       596 g~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~-dg~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  674 (1082)
                      ..++++|+++.+.+..+++|..  .+.++.|+| ...++.+|+.||.|..|.+.....+.                    
T Consensus       286 ~~~kv~DiR~mkEl~~~r~Hkk--dv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~--------------------  343 (464)
T KOG0284|consen  286 QSCKVFDIRTMKELFTYRGHKK--DVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLG--------------------  343 (464)
T ss_pred             ceEEEEehhHhHHHHHhhcchh--hheeeccccccccceeeccCCCceEEEecccccccc--------------------
Confidence            9999999998888888887765  799999999 67788999999999999875221110                    


Q ss_pred             CccccCCCCceeeeccCCceeEEEecccCCCCccccccccCcccccceeEEEEccCCceeeecccCCeEEEeecc
Q 001415          675 DVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQ  749 (1082)
Q Consensus       675 ~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iw~~~  749 (1082)
                                                            .....|...|.+++|+|-|..|++++.|.++++|.-.
T Consensus       344 --------------------------------------~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~r~  380 (464)
T KOG0284|consen  344 --------------------------------------EIPPAHDGEIWSLAYHPLGHILATGSNDRTVRFWTRN  380 (464)
T ss_pred             --------------------------------------CCCcccccceeeeeccccceeEeecCCCcceeeeccC
Confidence                                                  0112278889999999999999999999999999654

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=100.00  E-value=3.2e-31  Score=299.68  Aligned_cols=288  Identities=20%  Similarity=0.349  Sum_probs=238.7

Q ss_pred             CCCCceEEEEecCCCeEEEEEcCCCcEEEEEccccc--eeeeeceeeeccCCCCcccccccccCCCCceeEEEEecCCCe
Q 001415          357 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRE--RLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSL  434 (1082)
Q Consensus       357 h~~~v~~~~~spdg~~llasgs~dg~i~iwd~~~~~--~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~  434 (1082)
                      |...|.|+.|||||++ +++++.|+.+++|+..+++  .+.                   .+.+|...|.+++|||||++
T Consensus       158 ~~~sv~~~~fs~~g~~-l~~~~~~~~i~~~~~~~~~~~~~~-------------------~l~~h~~~v~~~~fs~d~~~  217 (456)
T KOG0266|consen  158 ECPSVTCVDFSPDGRA-LAAASSDGLIRIWKLEGIKSNLLR-------------------ELSGHTRGVSDVAFSPDGSY  217 (456)
T ss_pred             ccCceEEEEEcCCCCe-EEEccCCCcEEEeecccccchhhc-------------------cccccccceeeeEECCCCcE
Confidence            4899999999999996 9999999999999997766  332                   25799999999999999999


Q ss_pred             EEEEeCCCeEEEEEc-cCCceeeEEEEeeccccCeeEEEecCCCCceEEEEEeCCCcEEEEEccCCceeEEeecCCcCeE
Q 001415          435 FGVAYSRHIVQIYSY-HGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVY  513 (1082)
Q Consensus       435 las~~~d~~v~iwd~-~~~~~~~~~~~~~~h~~~V~~l~fs~dg~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~  513 (1082)
                      +++++.|++|+|||+ ..+..++   ++.+|...|++++|+|+|+  ++++|+.|++|+|||+++++++..+.+|.+.|+
T Consensus       218 l~s~s~D~tiriwd~~~~~~~~~---~l~gH~~~v~~~~f~p~g~--~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is  292 (456)
T KOG0266|consen  218 LLSGSDDKTLRIWDLKDDGRNLK---TLKGHSTYVTSVAFSPDGN--LLVSGSDDGTVRIWDVRTGECVRKLKGHSDGIS  292 (456)
T ss_pred             EEEecCCceEEEeeccCCCeEEE---EecCCCCceEEEEecCCCC--EEEEecCCCcEEEEeccCCeEEEeeeccCCceE
Confidence            999999999999999 4446555   7889999999999999997  899999999999999999999999999999999


Q ss_pred             EEeeeecCCceEEEEecCCCcEEEEecCCCCce--eeecCCCCceEEEEEccCCCeeeecccccceeEEEecCCCCEEEE
Q 001415          514 SVCPHHKENIQFIFSTALDGKIKAWLYDNLGSR--VDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLA  591 (1082)
Q Consensus       514 ~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~--~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~i~~~~~~~~~~~l~~  591 (1082)
                      +++|.+  ++.+|++++.|+.|++||+.++...  ..+..+...                  . .+..+.|+|++.++++
T Consensus       293 ~~~f~~--d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~------------------~-~~~~~~fsp~~~~ll~  351 (456)
T KOG0266|consen  293 GLAFSP--DGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENS------------------A-PVTSVQFSPNGKYLLS  351 (456)
T ss_pred             EEEECC--CCCEEEEcCCCccEEEEECCCCceeeeecccCCCCC------------------C-ceeEEEECCCCcEEEE
Confidence            999865  4579999999999999999987732  222222221                  0 3444555555569999


Q ss_pred             EeCCCeEEEEECCCcceEEEEecCCCC-CCcCeEEEcCCCCEEEEEECCCcEEEEEecCCccceeeccccc-cccccccc
Q 001415          592 AGDDFSIKFWDMDSVQLLTSIDADGGL-PASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLA-YDASRTSE  669 (1082)
Q Consensus       592 ~~~dg~i~iwd~~~~~~~~~~~~~~~~-~~i~~~~~s~dg~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-~~~~~~~~  669 (1082)
                      ++.|+.+++||+..+.....+..+... ..+.+..+++.+.++++|+.|+.|.+|+..++ .....+.+|. ..+.  ..
T Consensus       352 ~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~-~~~~~l~~h~~~~~~--~~  428 (456)
T KOG0266|consen  352 ASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSG-GILQRLEGHSKAAVS--DL  428 (456)
T ss_pred             ecCCCeEEEEEccCCcceeeecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCcc-chhhhhcCCCCCcee--cc
Confidence            999999999999999999999877663 23445556789999999999999999999986 6777777773 3322  44


Q ss_pred             ccCCCCccccCCCCceeeec--cCCceeEEEec
Q 001415          670 NSKNGDVRSLADVKPRITEE--SNDKSKVWKLT  700 (1082)
Q Consensus       670 ~~~~~~~~~s~~~~~l~~~~--~d~~i~iw~~~  700 (1082)
                      .+       .+....+++++  .|+.+++|...
T Consensus       429 ~~-------~~~~~~~~s~s~~~d~~~~~w~~~  454 (456)
T KOG0266|consen  429 SS-------HPTENLIASSSFEGDGLIRLWKYD  454 (456)
T ss_pred             cc-------CCCcCeeeecCcCCCceEEEecCC
Confidence            44       78888888887  68899999754

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=100.00  E-value=1.8e-30  Score=244.64  Aligned_cols=291  Identities=16%  Similarity=0.232  Sum_probs=233.7

Q ss_pred             cccceeEEEEccC-CceeeecccCCeEEEeeccccccCCCCCcccccCccccCCCCcceeecccCCCCCCCCccEEEeec
Q 001415          718 RATKISRLIFTNS-GNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSK  796 (1082)
Q Consensus       718 ~~~~i~~~~~s~~-~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~  796 (1082)
                      |.+++..++|+|- |..|++++.|..|++|+.....              -|     .+.  .....+|...|++++|+|
T Consensus        13 h~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~--------------s~-----~ck--~vld~~hkrsVRsvAwsp   71 (312)
T KOG0645|consen   13 HKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGD--------------SW-----TCK--TVLDDGHKRSVRSVAWSP   71 (312)
T ss_pred             CCCcEEEEEeccCCceEEEeecCCceEEEEecCCCC--------------cE-----EEE--EeccccchheeeeeeecC
Confidence            8889999999999 8899999999999999765210              01     011  112235999999999999


Q ss_pred             CCCeEEEee-CCeEEEEecC--CCeeEEEECCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEecccc---eeeeeecccc
Q 001415          797 NDSYVMSAS-GGKISLFNMM--TFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVD---EVKSKLKGHS  870 (1082)
Q Consensus       797 dg~~l~~~s-dg~i~iwd~~--~~~~~~~~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~---~~~~~l~~h~  870 (1082)
                      .|++||+++ |.++.||.-.  ..+++.++.+|..+|.+++|++ +|.+||+++.|..|-||.+..+   ++...|..|+
T Consensus        72 ~g~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~-sG~~LATCSRDKSVWiWe~deddEfec~aVL~~Ht  150 (312)
T KOG0645|consen   72 HGRYLASASFDATVVIWKKEDGEFECVATLEGHENEVKCVAWSA-SGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHT  150 (312)
T ss_pred             CCcEEEEeeccceEEEeecCCCceeEEeeeeccccceeEEEEcC-CCCEEEEeeCCCeEEEEEecCCCcEEEEeeecccc
Confidence            999999998 8999999876  4578999999999999999999 9999999999999999999854   6788999999


Q ss_pred             cCEEEEEEeCCCCEEEEEeCCCcEEEEEcCCcccccceeeeccCCCCCCCCCCcEEEEcCCCcEEEE-EecCeEEEEEcc
Q 001415          871 KRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFETT  949 (1082)
Q Consensus       871 ~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~-~~d~~i~iwd~~  949 (1082)
                      ..|..+.|+|...+|+|+|.|.+|++|+-..+  ....+.+...+|.   ..|-+++|++.|..|++ +.|+.++||...
T Consensus       151 qDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~d--ddW~c~~tl~g~~---~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~  225 (312)
T KOG0645|consen  151 QDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDD--DDWECVQTLDGHE---NTVWSLAFDNIGSRLVSCSDDGTVSIWRLY  225 (312)
T ss_pred             ccccEEEEcCCcceeEEeccCCeEEEEeecCC--CCeeEEEEecCcc---ceEEEEEecCCCceEEEecCCcceEeeeec
Confidence            99999999999999999999999999988731  2356777788887   57899999999999888 578999999864


Q ss_pred             CcceeeeeccCCCCcceeEEEEcCCCceEEEeecCCcEEEEecCCceeeeeeCCCeecCCCCCCCCceeeEEEEeCCCCC
Q 001415          950 KLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPN 1029 (1082)
Q Consensus       950 ~~~~~~~~~~~~h~~~i~~l~~s~dg~~l~t~s~dg~v~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~~~~~~~d~~ 1029 (1082)
                      +     .+ ...|+..+..+.|.  ...|++++.|+.|+||.-..+-.-..+.........|   ..-+-++.|.|...+
T Consensus       226 ~-----~~-~~~~sr~~Y~v~W~--~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aH---e~dVNsV~w~p~~~~  294 (312)
T KOG0645|consen  226 T-----DL-SGMHSRALYDVPWD--NGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAH---EVDVNSVQWNPKVSN  294 (312)
T ss_pred             c-----Cc-chhcccceEeeeec--ccceEeccCCCEEEEEEecCCCCCchHHHHHhhhccc---ccccceEEEcCCCCC
Confidence            1     12 23578899999997  5689999999999999876431111111111111123   233449999996678


Q ss_pred             eEEEEecCCcEEEEccC
Q 001415         1030 EFALGLSDGGVHVFEPL 1046 (1082)
Q Consensus      1030 ~l~s~~~dg~v~vW~~~ 1046 (1082)
                      +|++|+.||.|++|.+.
T Consensus       295 ~L~s~~DDG~v~~W~l~  311 (312)
T KOG0645|consen  295 RLASGGDDGIVNFWELE  311 (312)
T ss_pred             ceeecCCCceEEEEEec
Confidence            99999999999999875

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=4.9e-31  Score=242.68  Aligned_cols=283  Identities=17%  Similarity=0.268  Sum_probs=236.4

Q ss_pred             cccccCCCCceeEEEEecCCCeEEEEeCCCeEEEEEccCCceeeEEEEeeccccCeeEEEecCCCCceEEEEEeCCCcEE
Q 001415          413 AALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIK  492 (1082)
Q Consensus       413 ~~~~~~h~~~V~~l~~spdg~~las~~~d~~v~iwd~~~~~~~~~~~~~~~h~~~V~~l~fs~dg~~~~l~s~s~d~~i~  492 (1082)
                      ..++..|.++|.++.|+-||+|.++++.|.+|++||...|..++   +..+|...|..++.+.|+.  -+++|+.|+.+.
T Consensus        10 ~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~lik---tYsghG~EVlD~~~s~Dns--kf~s~GgDk~v~   84 (307)
T KOG0316|consen   10 LSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIK---TYSGHGHEVLDAALSSDNS--KFASCGGDKAVQ   84 (307)
T ss_pred             ceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceee---eecCCCceeeecccccccc--ccccCCCCceEE
Confidence            33588999999999999999999999999999999999999887   8999999999999999998  599999999999


Q ss_pred             EEEccCCceeEEeecCCcCeEEEeeeecCCceEEEEecCCCcEEEEecCCCC--ceeeecCCCCceEEEEEccCCCeeee
Q 001415          493 VWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLG--SRVDYEAPGRWCTTMAYSADGTRTYQ  570 (1082)
Q Consensus       493 vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~--~~~~~~~~~~~v~~~~~s~d~~~~~~  570 (1082)
                      +||+.+|+.++.+.+|.+.|+.+.|+...  ..+++|+.|..+++||.++..  +.+.+......|.++..+.       
T Consensus        85 vwDV~TGkv~Rr~rgH~aqVNtV~fNees--SVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~~-------  155 (307)
T KOG0316|consen   85 VWDVNTGKVDRRFRGHLAQVNTVRFNEES--SVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVAE-------  155 (307)
T ss_pred             EEEcccCeeeeecccccceeeEEEecCcc--eEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEecc-------
Confidence            99999999999999999999999986544  799999999999999998643  3344444445555554432       


Q ss_pred             cccccceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEecCC
Q 001415          571 GFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG  650 (1082)
Q Consensus       571 ~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~iwd~~~~  650 (1082)
                                      ..+++|+.||+++.||++.|++...+-++    +|+++.|++|++..++++.|+++++.|-.+|
T Consensus       156 ----------------heIvaGS~DGtvRtydiR~G~l~sDy~g~----pit~vs~s~d~nc~La~~l~stlrLlDk~tG  215 (307)
T KOG0316|consen  156 ----------------HEIVAGSVDGTVRTYDIRKGTLSSDYFGH----PITSVSFSKDGNCSLASSLDSTLRLLDKETG  215 (307)
T ss_pred             ----------------cEEEeeccCCcEEEEEeecceeehhhcCC----cceeEEecCCCCEEEEeeccceeeecccchh
Confidence                            26899999999999999999887766543    7999999999999999999999999999999


Q ss_pred             ccceeecccccccccccccccCCCCccccCCCCceeeeccCCceeEEEecccCCCCccccccccCcccccc-eeEEEEcc
Q 001415          651 IRLLRTFENLAYDASRTSENSKNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATK-ISRLIFTN  729 (1082)
Q Consensus       651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~-i~~~~~s~  729 (1082)
                       ++++...+|.........++       ......+++|+.||.+.+||+.+.........       +... +.++.+.|
T Consensus       216 -klL~sYkGhkn~eykldc~l-------~qsdthV~sgSEDG~Vy~wdLvd~~~~sk~~~-------~~~v~v~dl~~hp  280 (307)
T KOG0316|consen  216 -KLLKSYKGHKNMEYKLDCCL-------NQSDTHVFSGSEDGKVYFWDLVDETQISKLSV-------VSTVIVTDLSCHP  280 (307)
T ss_pred             -HHHHHhcccccceeeeeeee-------cccceeEEeccCCceEEEEEeccceeeeeecc-------CCceeEEeeeccc
Confidence             78888999887665433333       77778899999999999999987544433332       3333 78999999


Q ss_pred             CCceeeecccCCeEE
Q 001415          730 SGNAILALASNAIHL  744 (1082)
Q Consensus       730 ~~~~l~~~~~d~~i~  744 (1082)
                      ....+++++..+.+.
T Consensus       281 ~~~~f~~A~~~~~~~  295 (307)
T KOG0316|consen  281 TMDDFITATGHGDLF  295 (307)
T ss_pred             CccceeEecCCceec
Confidence            988788777665443

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=99.98  E-value=7.4e-32  Score=274.34  Aligned_cols=290  Identities=19%  Similarity=0.307  Sum_probs=247.2

Q ss_pred             cccCCCCceeEEEEec-CCCeEEEEeCCCeEEEEEccC-CceeeEEEEeeccccCeeEEEecCCCCceEEEEEeCCCcEE
Q 001415          415 LVKDPGVSVNRVIWSP-DGSLFGVAYSRHIVQIYSYHG-GDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIK  492 (1082)
Q Consensus       415 ~~~~h~~~V~~l~~sp-dg~~las~~~d~~v~iwd~~~-~~~~~~~~~~~~h~~~V~~l~fs~dg~~~~l~s~s~d~~i~  492 (1082)
                      .+.||+..|+++.|.| .+.+|++++.|+.|+||++-. +++++   ++.||..+|.+++|+++|.  -++|+|.|+.|+
T Consensus       209 ~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lr---tf~gH~k~Vrd~~~s~~g~--~fLS~sfD~~lK  283 (503)
T KOG0282|consen  209 NLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLR---TFKGHRKPVRDASFNNCGT--SFLSASFDRFLK  283 (503)
T ss_pred             eccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceeh---hhhcchhhhhhhhccccCC--eeeeeecceeee
Confidence            5889999999999999 999999999999999999986 66666   8999999999999999999  699999999999


Q ss_pred             EEEccCCceeEEeecCCcCeEEEeeeecCCceEEEEecCCCcEEEEecCCCCceeeecCCCCceEEEEEccCCCeeeecc
Q 001415          493 VWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGF  572 (1082)
Q Consensus       493 vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~  572 (1082)
                      +||+++|+++..+. ....++++.|+|++ .+.+++|+.|+.|+.||+++++.+..+..|-+.+..+.|-++|+      
T Consensus       284 lwDtETG~~~~~f~-~~~~~~cvkf~pd~-~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~------  355 (503)
T KOG0282|consen  284 LWDTETGQVLSRFH-LDKVPTCVKFHPDN-QNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGR------  355 (503)
T ss_pred             eeccccceEEEEEe-cCCCceeeecCCCC-CcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCc------
Confidence            99999999999987 45677899999877 37899999999999999999998888888888888888887776      


Q ss_pred             cccceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEecCCcc
Q 001415          573 RKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIR  652 (1082)
Q Consensus       573 ~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~iwd~~~~~~  652 (1082)
                                     ++++.++|+.++||+....-.+....... .....++..+|++++++.-+.|+.|.++.+....+
T Consensus       356 ---------------rFissSDdks~riWe~~~~v~ik~i~~~~-~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r  419 (503)
T KOG0282|consen  356 ---------------RFISSSDDKSVRIWENRIPVPIKNIADPE-MHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFR  419 (503)
T ss_pred             ---------------eEeeeccCccEEEEEcCCCccchhhcchh-hccCcceecCCCCCeehhhccCceEEEEecccccc
Confidence                           89999999999999998887766543322 22578999999999999999999999887543211


Q ss_pred             c--eeecccccccccccccccCCCCccccCCCCceeeeccCCceeEEEecccCCCCccccccccCcccccceeEEEEccC
Q 001415          653 L--LRTFENLAYDASRTSENSKNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNS  730 (1082)
Q Consensus       653 ~--~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~  730 (1082)
                      .  .+.+++|                                                                      
T Consensus       420 ~nkkK~feGh----------------------------------------------------------------------  429 (503)
T KOG0282|consen  420 LNKKKRFEGH----------------------------------------------------------------------  429 (503)
T ss_pred             cCHhhhhcce----------------------------------------------------------------------
Confidence            0  0000000                                                                      


Q ss_pred             CceeeecccCCeEEEeeccccccCCCCCcccccCccccCCCCcceeecccCCCCCCCCccEEEeecCCCeEEEee-CCeE
Q 001415          731 GNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKI  809 (1082)
Q Consensus       731 ~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~l~~~s-dg~i  809 (1082)
                                                                           .-.+.-..+.|||||.+|++|+ +|.+
T Consensus       430 -----------------------------------------------------~vaGys~~v~fSpDG~~l~SGdsdG~v  456 (503)
T KOG0282|consen  430 -----------------------------------------------------SVAGYSCQVDFSPDGRTLCSGDSDGKV  456 (503)
T ss_pred             -----------------------------------------------------eccCceeeEEEcCCCCeEEeecCCccE
Confidence                                                                 0123345688999999999997 7999


Q ss_pred             EEEecCCCeeEEEECCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEe
Q 001415          810 SLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYN  856 (1082)
Q Consensus       810 ~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd  856 (1082)
                      .+||..+.+.+..+..|...+..+.|+|.....+|+++.||.|++|+
T Consensus       457 ~~wdwkt~kl~~~lkah~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd  503 (503)
T KOG0282|consen  457 NFWDWKTTKLVSKLKAHDQPCIGVDWHPVEPSKVATCGWDGLIKIWD  503 (503)
T ss_pred             EEeechhhhhhhccccCCcceEEEEecCCCcceeEecccCceeEecC
Confidence            99999999999999999999999999998888999999999999996

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.98  E-value=1.5e-30  Score=294.36  Aligned_cols=289  Identities=27%  Similarity=0.413  Sum_probs=244.9

Q ss_pred             cccceeEEEEccCCceeeecccCCeEEEeeccccccCCCCCcccccCccccCCCCcceeecccCCCCCCCCccEEEeecC
Q 001415          718 RATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKN  797 (1082)
Q Consensus       718 ~~~~i~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~d  797 (1082)
                      +...|.++.|+++|+.+++++.++.+++|+......                     .....+  .+|...|.+++|+||
T Consensus       158 ~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~---------------------~~~~~l--~~h~~~v~~~~fs~d  214 (456)
T KOG0266|consen  158 ECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKS---------------------NLLREL--SGHTRGVSDVAFSPD  214 (456)
T ss_pred             ccCceEEEEEcCCCCeEEEccCCCcEEEeecccccc---------------------hhhccc--cccccceeeeEECCC
Confidence            467889999999999999999999999997632110                     001111  249999999999999


Q ss_pred             CCeEEEee-CCeEEEEec-CCCeeEEEECCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEecccceeeeeecccccCEEE
Q 001415          798 DSYVMSAS-GGKISLFNM-MTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITG  875 (1082)
Q Consensus       798 g~~l~~~s-dg~i~iwd~-~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~  875 (1082)
                      ++++++++ |++|+|||+ ..+..++++.+|...|++++|+| +++++++|+.|++|+|||+.+++++..+.+|.+.|++
T Consensus       215 ~~~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p-~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~  293 (456)
T KOG0266|consen  215 GSYLLSGSDDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSP-DGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISG  293 (456)
T ss_pred             CcEEEEecCCceEEEeeccCCCeEEEEecCCCCceEEEEecC-CCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEE
Confidence            99999998 689999999 56689999999999999999999 6799999999999999999999999999999999999


Q ss_pred             EEEeCCCCEEEEEeCCCcEEEEEcCCcccccceeeeccCCCCCCCCCCcEEEEcCCCcEEEEE-ecCeEEEEEccCccee
Q 001415          876 LAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQLAIFETTKLECV  954 (1082)
Q Consensus       876 l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~-~d~~i~iwd~~~~~~~  954 (1082)
                      ++|++|+.+|++++.|+.|++||+.++...   +.....++.... .+..+.|+|++++++++ .|+.+++||+..+.++
T Consensus       294 ~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~---~~~~~~~~~~~~-~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~  369 (456)
T KOG0266|consen  294 LAFSPDGNLLVSASYDGTIRVWDLETGSKL---CLKLLSGAENSA-PVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSV  369 (456)
T ss_pred             EEECCCCCEEEEcCCCccEEEEECCCCcee---eeecccCCCCCC-ceeEEEECCCCcEEEEecCCCeEEEEEccCCcce
Confidence            999999999999999999999999997643   344555555433 68999999999999995 6779999999999999


Q ss_pred             eeeccCCCCc---ceeEEEEcCCCceEEEeecCCcEEEEecCCceeeeeeCCCeecCCCCCCCCceeeEEEEeCCCCCeE
Q 001415          955 KQWVPRESSA---PITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEF 1031 (1082)
Q Consensus       955 ~~~~~~~h~~---~i~~l~~s~dg~~l~t~s~dg~v~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~~~~~~~d~~~l 1031 (1082)
                      ..+.  +|..   .+.+..++++|+++++|+.|+.|++|++.++..++.+.       +|..  -....+.++|. .+++
T Consensus       370 ~~~~--~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~-------~h~~--~~~~~~~~~~~-~~~~  437 (456)
T KOG0266|consen  370 GTYT--GHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRLE-------GHSK--AAVSDLSSHPT-ENLI  437 (456)
T ss_pred             eeec--ccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCccchhhhhc-------CCCC--CceeccccCCC-cCee
Confidence            9888  4433   56666778999999999999999999999999998888       5531  23347888884 6788


Q ss_pred             EEEe--cCCcEEEEccC
Q 001415         1032 ALGL--SDGGVHVFEPL 1046 (1082)
Q Consensus      1032 ~s~~--~dg~v~vW~~~ 1046 (1082)
                      ++++  .|+.+++|...
T Consensus       438 ~s~s~~~d~~~~~w~~~  454 (456)
T KOG0266|consen  438 ASSSFEGDGLIRLWKYD  454 (456)
T ss_pred             eecCcCCCceEEEecCC
Confidence            8887  79999999764

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=99.98  E-value=2.4e-32  Score=264.88  Aligned_cols=273  Identities=20%  Similarity=0.328  Sum_probs=228.9

Q ss_pred             CCCCceEEEEecCCCeEEEEEcCCCcEEEEEccccceeeeeceeeeccCCCCcccccccccCCCCceeEEEEecCCCeEE
Q 001415          357 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFG  436 (1082)
Q Consensus       357 h~~~v~~~~~spdg~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la  436 (1082)
                      ..+.|.|+.+..+   .+++|..|++|.|||.++..++.                   ++.||++.|.|+.|  |.+.|+
T Consensus       196 ~skgVYClQYDD~---kiVSGlrDnTikiWD~n~~~c~~-------------------~L~GHtGSVLCLqy--d~rvii  251 (499)
T KOG0281|consen  196 NSKGVYCLQYDDE---KIVSGLRDNTIKIWDKNSLECLK-------------------ILTGHTGSVLCLQY--DERVIV  251 (499)
T ss_pred             cCCceEEEEecch---hhhcccccCceEEeccccHHHHH-------------------hhhcCCCcEEeeec--cceEEE
Confidence            4578999998643   38999999999999999888776                   48999999999998  567999


Q ss_pred             EEeCCCeEEEEEccCCceeeEEEEeeccccCeeEEEecCCCCceEEEEEeCCCcEEEEEccCCce---eEEeecCCcCeE
Q 001415          437 VAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAK---QYIFEGHEAPVY  513 (1082)
Q Consensus       437 s~~~d~~v~iwd~~~~~~~~~~~~~~~h~~~V~~l~fs~dg~~~~l~s~s~d~~i~vwd~~~~~~---~~~~~~h~~~v~  513 (1082)
                      +|+.|.+|+|||+++|+++.   ++-+|...|..+.|+..    ++++++.|.++.|||+.+...   .+.+.||...|+
T Consensus       252 sGSSDsTvrvWDv~tge~l~---tlihHceaVLhlrf~ng----~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVN  324 (499)
T KOG0281|consen  252 SGSSDSTVRVWDVNTGEPLN---TLIHHCEAVLHLRFSNG----YMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVN  324 (499)
T ss_pred             ecCCCceEEEEeccCCchhh---HHhhhcceeEEEEEeCC----EEEEecCCceeEEEeccCchHHHHHHHHhhhhhhee
Confidence            99999999999999999887   78899999999999843    799999999999999987653   357789999999


Q ss_pred             EEeeeecCCceEEEEecCCCcEEEEecCCCCceeeecCCCCceEEEEEccCCCeeeecccccceeEEEecCCCCEEEEEe
Q 001415          514 SVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAG  593 (1082)
Q Consensus       514 ~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~i~~~~~~~~~~~l~~~~  593 (1082)
                      .+.|.  .  +++++++.|.+|++|+..+.+...++.+|...+.++.+.                       ++.+++|+
T Consensus       325 vVdfd--~--kyIVsASgDRTikvW~~st~efvRtl~gHkRGIAClQYr-----------------------~rlvVSGS  377 (499)
T KOG0281|consen  325 VVDFD--D--KYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQYR-----------------------DRLVVSGS  377 (499)
T ss_pred             eeccc--c--ceEEEecCCceEEEEeccceeeehhhhcccccceehhcc-----------------------CeEEEecC
Confidence            99874  2  599999999999999999999998888888877766542                       34788999


Q ss_pred             CCCeEEEEECCCcceEEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEecCCccc--------eeeccccccccc
Q 001415          594 DDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRL--------LRTFENLAYDAS  665 (1082)
Q Consensus       594 ~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~iwd~~~~~~~--------~~~~~~~~~~~~  665 (1082)
                      .|.+|++||+..|.++..+++|..  -|.++.|.  .+.+++|..||.|++||+..+...        +..+..|...+.
T Consensus       378 SDntIRlwdi~~G~cLRvLeGHEe--LvRciRFd--~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVF  453 (499)
T KOG0281|consen  378 SDNTIRLWDIECGACLRVLEGHEE--LVRCIRFD--NKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVF  453 (499)
T ss_pred             CCceEEEEeccccHHHHHHhchHH--hhhheeec--CceeeeccccceEEEEecccccCCcccccchHHHhhhhccceeE
Confidence            999999999999999999998876  58899985  678999999999999999877433        222233333332


Q ss_pred             ccccccCCCCccccCCCCceeeeccCCceeEEEeccc
Q 001415          666 RTSENSKNGDVRSLADVKPRITEESNDKSKVWKLTEL  702 (1082)
Q Consensus       666 ~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~iw~~~~~  702 (1082)
                        .+         .-|.-.+++++.|.+|.+||....
T Consensus       454 --rL---------QFD~fqIvsssHddtILiWdFl~~  479 (499)
T KOG0281|consen  454 --RL---------QFDEFQIISSSHDDTILIWDFLNG  479 (499)
T ss_pred             --EE---------eecceEEEeccCCCeEEEEEcCCC
Confidence              22         336677889999999999998764

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.98  E-value=1.1e-30  Score=240.40  Aligned_cols=282  Identities=17%  Similarity=0.212  Sum_probs=230.8

Q ss_pred             Ccceeeec-CCCCCceEEEEecCCCeEEEEEcCCCcEEEEEccccceeeeeceeeeccCCCCcccccccccCCCCceeEE
Q 001415          348 PKTVTRTL-NQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRV  426 (1082)
Q Consensus       348 ~~~~~~~~-~h~~~v~~~~~spdg~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l  426 (1082)
                      |.+-.+.+ .|+++|.++.|+-||+| .++++.|.+|++|+...|.++++                   +.+|..+|..+
T Consensus         6 ptkr~~~l~~~qgaV~avryN~dGnY-~ltcGsdrtvrLWNp~rg~likt-------------------YsghG~EVlD~   65 (307)
T KOG0316|consen    6 PTKRLSILDCAQGAVRAVRYNVDGNY-CLTCGSDRTVRLWNPLRGALIKT-------------------YSGHGHEVLDA   65 (307)
T ss_pred             cchhceeecccccceEEEEEccCCCE-EEEcCCCceEEeecccccceeee-------------------ecCCCceeeec
Confidence            34333444 49999999999999996 77888899999999999999985                   88999999999


Q ss_pred             EEecCCCeEEEEeCCCeEEEEEccCCceeeEEEEeeccccCeeEEEecCCCCceEEEEEeCCCcEEEEEccC--CceeEE
Q 001415          427 IWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATN--GAKQYI  504 (1082)
Q Consensus       427 ~~spdg~~las~~~d~~v~iwd~~~~~~~~~~~~~~~h~~~V~~l~fs~dg~~~~l~s~s~d~~i~vwd~~~--~~~~~~  504 (1082)
                      +.+.|...+|+|+.|..|.+||+.+|+.++   .+.+|.+.|+.++|+.+..  .+++|+.|.++++||.++  -++++.
T Consensus        66 ~~s~Dnskf~s~GgDk~v~vwDV~TGkv~R---r~rgH~aqVNtV~fNeesS--Vv~SgsfD~s~r~wDCRS~s~ePiQi  140 (307)
T KOG0316|consen   66 ALSSDNSKFASCGGDKAVQVWDVNTGKVDR---RFRGHLAQVNTVRFNEESS--VVASGSFDSSVRLWDCRSRSFEPIQI  140 (307)
T ss_pred             cccccccccccCCCCceEEEEEcccCeeee---ecccccceeeEEEecCcce--EEEeccccceeEEEEcccCCCCccch
Confidence            999999999999999999999999999887   7999999999999999988  899999999999999876  467888


Q ss_pred             eecCCcCeEEEeeeecCCceEEEEecCCCcEEEEecCCCCceeeecCCCCceEEEEEccCCCeeeecccccceeEEEecC
Q 001415          505 FEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDT  584 (1082)
Q Consensus       505 ~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~i~~~~~~~  584 (1082)
                      +......|.++.+..    ..|++|+.||+++.||++.+.....+  -++                     ++++++|++
T Consensus       141 ldea~D~V~Si~v~~----heIvaGS~DGtvRtydiR~G~l~sDy--~g~---------------------pit~vs~s~  193 (307)
T KOG0316|consen  141 LDEAKDGVSSIDVAE----HEIVAGSVDGTVRTYDIRKGTLSSDY--FGH---------------------PITSVSFSK  193 (307)
T ss_pred             hhhhcCceeEEEecc----cEEEeeccCCcEEEEEeecceeehhh--cCC---------------------cceeEEecC
Confidence            888888999987643    57999999999999999865433222  233                     444555555


Q ss_pred             CCCEEEEEeCCCeEEEEECCCcceEEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEecCCccceeecccccccc
Q 001415          585 TKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDA  664 (1082)
Q Consensus       585 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~  664 (1082)
                      +++..++++.|+++++.|-.+|+++..+.+|.....-..++++.....+++|++||.+.+||+.+. ..+..+..+....
T Consensus       194 d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~-~~~sk~~~~~~v~  272 (307)
T KOG0316|consen  194 DGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDE-TQISKLSVVSTVI  272 (307)
T ss_pred             CCCEEEEeeccceeeecccchhHHHHHhcccccceeeeeeeecccceeEEeccCCceEEEEEeccc-eeeeeeccCCcee
Confidence            555889999999999999999999999999887665567888888899999999999999999887 4444444443332


Q ss_pred             cccccccCCCCccccCCCCceeeecc
Q 001415          665 SRTSENSKNGDVRSLADVKPRITEES  690 (1082)
Q Consensus       665 ~~~~~~~~~~~~~~s~~~~~l~~~~~  690 (1082)
                      .. .+.+       .|.-..++++..
T Consensus       273 v~-dl~~-------hp~~~~f~~A~~  290 (307)
T KOG0316|consen  273 VT-DLSC-------HPTMDDFITATG  290 (307)
T ss_pred             EE-eeec-------ccCccceeEecC
Confidence            11 3344       555555655544

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=99.98  E-value=2.2e-31  Score=264.55  Aligned_cols=285  Identities=16%  Similarity=0.248  Sum_probs=240.4

Q ss_pred             cccceeEEEEccCCceeeecccCCeEEEeeccccccCCCCCcccccCccccCCCCcceeecccCCCCCCCCccEEEeecC
Q 001415          718 RATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKN  797 (1082)
Q Consensus       718 ~~~~i~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~d  797 (1082)
                      -...|..+.|.|+|+.|++++..|.+.+|+...-.+                         ..-.+.|...|+++.|+++
T Consensus        95 vkc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnF-------------------------EtilQaHDs~Vr~m~ws~~  149 (464)
T KOG0284|consen   95 VKCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNF-------------------------ETILQAHDSPVRTMKWSHN  149 (464)
T ss_pred             cccceeeEEEcCCCceeEeecccccEEEecCceeeH-------------------------HHHhhhhcccceeEEEccC
Confidence            345788999999999999999999999997532111                         1112349999999999999


Q ss_pred             CCeEEEee-CCeEEEEecCCCeeEEEECCC-CCCeeEEEEecCCCcEEEEEeCCCcEEEEecccceeeeeecccccCEEE
Q 001415          798 DSYVMSAS-GGKISLFNMMTFKTMATFMPP-PPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITG  875 (1082)
Q Consensus       798 g~~l~~~s-dg~i~iwd~~~~~~~~~~~~~-~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~  875 (1082)
                      |.++++|+ +|.|++|+..-. .+..+..| ...|++++||| ....++++++||+|+|||....+.-..+.||.-.|.+
T Consensus       150 g~wmiSgD~gG~iKyWqpnmn-nVk~~~ahh~eaIRdlafSp-nDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVks  227 (464)
T KOG0284|consen  150 GTWMISGDKGGMIKYWQPNMN-NVKIIQAHHAEAIRDLAFSP-NDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKS  227 (464)
T ss_pred             CCEEEEcCCCceEEecccchh-hhHHhhHhhhhhhheeccCC-CCceeEEecCCCeEEEEeccCCchhheeccCCCCcce
Confidence            99999998 589999998653 33444444 48899999999 6678889999999999999998888899999999999


Q ss_pred             EEEeCCCCEEEEEeCCCcEEEEEcCCcccccceeeeccCCCCCCCCCCcEEEEcCCCcEEEE-EecCeEEEEEccCccee
Q 001415          876 LAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFETTKLECV  954 (1082)
Q Consensus       876 l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~-~~d~~i~iwd~~~~~~~  954 (1082)
                      ++|+|...+||++|.|..|++||.+++.     ++....+|.   ..|..+.|+|++.+|++ +.|..++++|+++.+.+
T Consensus       228 vdWHP~kgLiasgskDnlVKlWDprSg~-----cl~tlh~HK---ntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl  299 (464)
T KOG0284|consen  228 VDWHPTKGLIASGSKDNLVKLWDPRSGS-----CLATLHGHK---NTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKEL  299 (464)
T ss_pred             eccCCccceeEEccCCceeEeecCCCcc-----hhhhhhhcc---ceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHH
Confidence            9999999999999999999999999965     566677777   67899999999999999 78999999999988888


Q ss_pred             eeeccCCCCcceeEEEEcCC-CceEEEeecCCcEEEEecCCceeeeeeCCCeecCCCCCCCCceeeEEEEeCCCCCeEEE
Q 001415          955 KQWVPRESSAPITHATFSCD-SQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFAL 1033 (1082)
Q Consensus       955 ~~~~~~~h~~~i~~l~~s~d-g~~l~t~s~dg~v~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~~~~~~~d~~~l~s 1033 (1082)
                      ..+.  +|...|++++|+|- ..+|.+|+.||.|..|.+...+.+..+.      .+|... |+  +++|+| -|.+|++
T Consensus       300 ~~~r--~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~------~AHd~~-iw--sl~~hP-lGhil~t  367 (464)
T KOG0284|consen  300 FTYR--GHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEIP------PAHDGE-IW--SLAYHP-LGHILAT  367 (464)
T ss_pred             HHhh--cchhhheeeccccccccceeeccCCCceEEEeccccccccCCC------cccccc-ee--eeeccc-cceeEee
Confidence            7777  89999999999995 4578889999999999999666665443      344233 44  899999 5999999


Q ss_pred             EecCCcEEEEccCCCC
Q 001415         1034 GLSDGGVHVFEPLESE 1049 (1082)
Q Consensus      1034 ~~~dg~v~vW~~~~~~ 1049 (1082)
                      |+.|.++++|.-....
T Consensus       368 gsnd~t~rfw~r~rp~  383 (464)
T KOG0284|consen  368 GSNDRTVRFWTRNRPG  383 (464)
T ss_pred             cCCCcceeeeccCCCC
Confidence            9999999999876555

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=99.97  E-value=5.9e-31  Score=244.19  Aligned_cols=287  Identities=17%  Similarity=0.305  Sum_probs=224.9

Q ss_pred             cccCCCCceeEEEEec---CCCeEEEEeCCCeEEEEEccCCceeeEEEEeeccccCeeEEEecCCCCceEEEEEeCCCcE
Q 001415          415 LVKDPGVSVNRVIWSP---DGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTI  491 (1082)
Q Consensus       415 ~~~~h~~~V~~l~~sp---dg~~las~~~d~~v~iwd~~~~~~~~~~~~~~~h~~~V~~l~fs~dg~~~~l~s~s~d~~i  491 (1082)
                      +..+|+.+|..++|||   +|-+|++++.|+.-.+-+-++|.-+.   ++.||.+.|++.....+..  ..++++.|-+.
T Consensus         9 ~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwig---tfeghkgavw~~~l~~na~--~aasaaadfta   83 (334)
T KOG0278|consen    9 TCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIG---TFEGHKGAVWSATLNKNAT--RAASAAADFTA   83 (334)
T ss_pred             EEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEE---eeeccCcceeeeecCchhh--hhhhhcccchh
Confidence            3679999999999997   89999999999998888888988777   8999999999999988877  68999999999


Q ss_pred             EEEEccCCceeEEeecCCcCeEEEeeeecCCceEEEEecCCCcEEEEecCCCCcee-eecCCCCceEEEEEccCCCeeee
Q 001415          492 KVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRV-DYEAPGRWCTTMAYSADGTRTYQ  570 (1082)
Q Consensus       492 ~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~-~~~~~~~~v~~~~~s~d~~~~~~  570 (1082)
                      +|||.-+|..+++|. |...|.+++|+.+.  ++|++|+.+..+|++|++..+... .+..|.+.|..+.|....+    
T Consensus        84 kvw~a~tgdelhsf~-hkhivk~~af~~ds--~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~----  156 (334)
T KOG0278|consen   84 KVWDAVTGDELHSFE-HKHIVKAVAFSQDS--NYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDK----  156 (334)
T ss_pred             hhhhhhhhhhhhhhh-hhheeeeEEecccc--hhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCc----
Confidence            999999999999998 89999999987554  799999999999999998654332 3334444333333322221    


Q ss_pred             cccccceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEecCC
Q 001415          571 GFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG  650 (1082)
Q Consensus       571 ~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~iwd~~~~  650 (1082)
                                       .+++...|++||+||.+++..++++..                                    
T Consensus       157 -----------------~iLSSadd~tVRLWD~rTgt~v~sL~~------------------------------------  183 (334)
T KOG0278|consen  157 -----------------CILSSADDKTVRLWDHRTGTEVQSLEF------------------------------------  183 (334)
T ss_pred             -----------------eEEeeccCCceEEEEeccCcEEEEEec------------------------------------
Confidence                             344444444444444444443333322                                    


Q ss_pred             ccceeecccccccccccccccCCCCccccCCCCceeeeccCCceeEEEecccCCCCccccccccCcccccceeEEEEccC
Q 001415          651 IRLLRTFENLAYDASRTSENSKNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNS  730 (1082)
Q Consensus       651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~  730 (1082)
                                                                                                      
T Consensus       184 --------------------------------------------------------------------------------  183 (334)
T KOG0278|consen  184 --------------------------------------------------------------------------------  183 (334)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CceeeecccCCeEEEeeccccccCCCCCcccccCccccCCCCcceeecccCCCCCCCCccEEEeecCCCeEEEeeCCeEE
Q 001415          731 GNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGKIS  810 (1082)
Q Consensus       731 ~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~l~~~sdg~i~  810 (1082)
                                                                             ...|+++.+++||++|.++..+.|.
T Consensus       184 -------------------------------------------------------~s~VtSlEvs~dG~ilTia~gssV~  208 (334)
T KOG0278|consen  184 -------------------------------------------------------NSPVTSLEVSQDGRILTIAYGSSVK  208 (334)
T ss_pred             -------------------------------------------------------CCCCcceeeccCCCEEEEecCceeE
Confidence                                                                   3344555666666666666666777


Q ss_pred             EEecCCCeeEEEECCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEecccceeeeee-cccccCEEEEEEeCCCCEEEEEe
Q 001415          811 LFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKL-KGHSKRITGLAFSHALNVLVSSG  889 (1082)
Q Consensus       811 iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l-~~h~~~V~~l~~s~d~~~l~s~s  889 (1082)
                      +||..+...++.+. -+..|.+..++| +...+++|++|..++.||..+|+.+..+ ++|-++|.|+.|+|||...++||
T Consensus       209 Fwdaksf~~lKs~k-~P~nV~SASL~P-~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGS  286 (334)
T KOG0278|consen  209 FWDAKSFGLLKSYK-MPCNVESASLHP-KKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGS  286 (334)
T ss_pred             Eeccccccceeecc-CccccccccccC-CCceEEecCcceEEEEEeccCCceeeecccCCCCceEEEEECCCCceeeccC
Confidence            77777777777665 344688999999 7789999999999999999999998885 99999999999999999999999


Q ss_pred             CCCcEEEEEcCCcc
Q 001415          890 ADSQLCVWSSDGWE  903 (1082)
Q Consensus       890 ~Dg~i~vwd~~~~~  903 (1082)
                      .||+|++|....++
T Consensus       287 EDGTirlWQt~~~~  300 (334)
T KOG0278|consen  287 EDGTIRLWQTTPGK  300 (334)
T ss_pred             CCceEEEEEecCCC
Confidence            99999999987754

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.97  E-value=6.8e-29  Score=258.94  Aligned_cols=579  Identities=16%  Similarity=0.206  Sum_probs=337.7

Q ss_pred             cceeeecCCCCCceEEEEecCCCeEEEEEcCCCcEEEEEccccceeeeeceeeeccCCCCcccccccccCCCCceeEEEE
Q 001415          349 KTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIW  428 (1082)
Q Consensus       349 ~~~~~~~~h~~~v~~~~~spdg~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~  428 (1082)
                      +.+-.+-.|.+.|+.+.|||-...|||++|.|..|+||.+..|-....             .-....+.+..-.|.|+.|
T Consensus        70 r~i~~l~~H~d~VtDl~FspF~D~LLAT~S~D~~VKiW~lp~g~~q~L-------------Sape~~~g~~~~~vE~l~f  136 (1012)
T KOG1445|consen   70 RDIGILAAHGDQVTDLGFSPFADELLATCSRDEPVKIWKLPRGHSQKL-------------SAPEIDVGGGNVIVECLRF  136 (1012)
T ss_pred             cccceeecccceeeccCccccchhhhhcccCCCeeEEEecCCCccccc-------------CCcceeecCCceEEEEeec
Confidence            344455569999999999998888999999999999999975432210             0111135555678999999


Q ss_pred             ecCCCeEEEEeCCCeEEEEEccCCceeeEEEEeeccccCeeEEEecCCCCceEEEEEeCCCcEEEEEccC-CceeEEeec
Q 001415          429 SPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATN-GAKQYIFEG  507 (1082)
Q Consensus       429 spdg~~las~~~d~~v~iwd~~~~~~~~~~~~~~~h~~~V~~l~fs~dg~~~~l~s~s~d~~i~vwd~~~-~~~~~~~~~  507 (1082)
                      .|...-|...+..|.++|||+.+++.+.   ++.+|.+.|.++.|+.||+  +|++.+.|+.|+|||.+. ++.++...+
T Consensus       137 HpTaDgil~s~a~g~v~i~D~stqk~~~---el~~h~d~vQSa~WseDG~--llatscKdkqirifDPRa~~~piQ~te~  211 (1012)
T KOG1445|consen  137 HPTADGILASGAHGSVYITDISTQKTAV---ELSGHTDKVQSADWSEDGK--LLATSCKDKQIRIFDPRASMEPIQTTEG  211 (1012)
T ss_pred             ccCcCceEEeccCceEEEEEcccCceee---cccCCchhhhccccccCCc--eEeeecCCcceEEeCCccCCCccccccc
Confidence            9966555556677999999999998666   8999999999999999999  899999999999999875 678888888


Q ss_pred             CCcCe-EEEeeeecCCceEEEEecCC----CcEEEEecCCCCceeeecCCCCceEEEEEccCCCeeeecccccceeEEEe
Q 001415          508 HEAPV-YSVCPHHKENIQFIFSTALD----GKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQF  582 (1082)
Q Consensus       508 h~~~v-~~~~~~~~~~~~~l~s~~~d----g~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~i~~~~~  582 (1082)
                      |.+.- ..+.|.  ++-..|++.+.+    ..|++||.+.....         +..+.+...          ..+..--|
T Consensus       212 H~~~rdsRv~w~--Gn~~rlisTGF~~~R~reV~~~Dtr~f~~p---------~~tleld~s----------tGvLiPl~  270 (1012)
T KOG1445|consen  212 HGGMRDSRVLWA--GNWERLISTGFTTKRIREVRAYDTRKFGAP---------VHTLELDSS----------TGVLIPLY  270 (1012)
T ss_pred             cccchhheeeec--cchhhhhhcccchhhheeeeeeeccccCCc---------ceeEEeecc----------cceEeeee
Confidence            87642 223443  333467777655    46899998753322         112211110          12222345


Q ss_pred             cCCCCEEE-EEeCCCeEEEEECCCcceEEE--Ee--cCCC---------------CCCcCe------------E------
Q 001415          583 DTTKNRFL-AAGDDFSIKFWDMDSVQLLTS--ID--ADGG---------------LPASPR------------I------  624 (1082)
Q Consensus       583 ~~~~~~l~-~~~~dg~i~iwd~~~~~~~~~--~~--~~~~---------------~~~i~~------------~------  624 (1082)
                      +||.+.++ +|-.+..|..+.+...+....  ++  ....               ...|..            .      
T Consensus       271 DpDt~llfLaGKG~~~l~~lE~~d~qPyLs~v~~~tle~~~~GA~lvpkral~VM~~EV~rvlQLt~~~ivPi~y~VPRk  350 (1012)
T KOG1445|consen  271 DPDTRLLFLAGKGTNKLFMLEMQDRQPYLSHVFELTLEEQTLGATLVPKRALHVMDGEVDRVLQLTKSSIVPIPYIVPRK  350 (1012)
T ss_pred             cCCCceEEEecCCcceEEEEEecCCCcchhhhhhhcchhhhccceecchhhhhhcchhhhhheecccCceeecccccchh
Confidence            55555444 444677787777755432110  00  0000               000000            0      


Q ss_pred             ---EEcCC--------------CCEEEEEECCCcEEEEEecCCccc--------------------eeecc------ccc
Q 001415          625 ---RFNKD--------------GCLLAVSTNDNGIKILATSDGIRL--------------------LRTFE------NLA  661 (1082)
Q Consensus       625 ---~~s~d--------------g~~l~~~~~dg~i~iwd~~~~~~~--------------------~~~~~------~~~  661 (1082)
                         .|+.|              |.++.  +.+..+.-..+.-..+.                    ...+.      .+.
T Consensus       351 syrdFH~DLfPeT~G~~p~~~ageWln--G~Nq~vqKvSl~Pa~r~h~~~pp~~~P~p~~a~t~sf~~v~~ppaaP~~~~  428 (1012)
T KOG1445|consen  351 SYRDFHSDLFPETRGAEPGCTAGEWLN--GTNQVVQKVSLAPAQRSHSPPPPEPVPTPKVAQTPSFVPVPTPPAAPRPMS  428 (1012)
T ss_pred             hhhhhhhhhCccccCCccCcCccceec--CccccccccccCchhccCCCCCCCCCCCcccccCCCCccccCCCCCCCccc
Confidence               11111              00000  00000000000000000                    00000      000


Q ss_pred             c--------cc-cc-ccc-------------------------------ccCCCCccccCCCCcee---e-eccC--Cce
Q 001415          662 Y--------DA-SR-TSE-------------------------------NSKNGDVRSLADVKPRI---T-EESN--DKS  694 (1082)
Q Consensus       662 ~--------~~-~~-~~~-------------------------------~~~~~~~~~s~~~~~l~---~-~~~d--~~i  694 (1082)
                      .        +. .. .++                               .+.......++....++   + --.|  .+.
T Consensus       429 n~~~~~~~~Pd~~~qpaV~~~~e~r~l~~~~~E~~~g~~~~~~dad~~~g~sS~~s~~~~~~~~~~kP~S~plt~~~s~~  508 (1012)
T KOG1445|consen  429 NNNSSSNNVPDVQEQPAVPKKEEVRELDYRPYEKENGVHTPNADADSTQGNSSPISTISPEPVTIVKPASTPLTDSVSTP  508 (1012)
T ss_pred             cccccccCCCccccCCCcCcchhhhhhcccccccccCccCCCcccccccCCCCCccccCCCcccccCCCCcccccccccc
Confidence            0        00 00 000                               00000000000000000   0 0000  000


Q ss_pred             eEEEe------c---------------------cc-------CCCCccccccccCccccc-ce------------eEEEE
Q 001415          695 KVWKL------T---------------------EL-------SEPNQCRSLRLPENLRAT-KI------------SRLIF  727 (1082)
Q Consensus       695 ~iw~~------~---------------------~~-------~~~~~~~~~~~~~~~~~~-~i------------~~~~~  727 (1082)
                      .+...      .                     ..       ....+++...-. .+|.. .|            .+-.|
T Consensus       509 s~~~P~~~ksvPe~~~~~~g~~~sat~~v~~s~s~r~~s~v~G~iSKFRH~~Gt-~ghks~hi~NLrnln~~~PgEsnGf  587 (1012)
T KOG1445|consen  509 SVVGPAFGKSVPEQPPVNFGKPISATNRVPLSQSVRPKSCVVGQISKFRHVDGT-QGHKSAHISNLRNLNTRLPGESNGF  587 (1012)
T ss_pred             cccCccccccCCCCCCcccCCCccccccccccccccccceeeccchheeeccCc-cccchhhhhhhhcccccCCCccCce
Confidence            00000      0                     00       000000000000 00110 01            11123


Q ss_pred             ccCCceee--ecccCCeEEEeeccccccCCCCCcccccCccccCCCCcceeecccCCCCCCCCccEEEeec-CCCeEEEe
Q 001415          728 TNSGNAIL--ALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSK-NDSYVMSA  804 (1082)
Q Consensus       728 s~~~~~l~--~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~-dg~~l~~~  804 (1082)
                      +.+..+++  ..+..|.|-||++.....-|++-...                     ......|+.+.|.| |...||++
T Consensus       588 can~~rvAVPL~g~gG~iai~el~~PGrLPDgv~p~---------------------l~Ngt~vtDl~WdPFD~~rLAVa  646 (1012)
T KOG1445|consen  588 CANNKRVAVPLAGSGGVIAIYELNEPGRLPDGVMPG---------------------LFNGTLVTDLHWDPFDDERLAVA  646 (1012)
T ss_pred             eeccceEEEEecCCCceEEEEEcCCCCCCCcccccc---------------------cccCceeeecccCCCChHHeeec
Confidence            33333333  34567899999987655555443321                     12567788999998 66678877


Q ss_pred             e-CCeEEEEecCCC-------eeEEEECCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEecccceeeeeecccccCEEEE
Q 001415          805 S-GGKISLFNMMTF-------KTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGL  876 (1082)
Q Consensus       805 s-dg~i~iwd~~~~-------~~~~~~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l  876 (1082)
                      + ||.|++|.+..+       .+...+..|...|+++.|+|--..+||+++.|-+|++||+.+++....+.+|++.|.++
T Consensus       647 ~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~gHtdqIf~~  726 (1012)
T KOG1445|consen  647 TDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVGHTDQIFGI  726 (1012)
T ss_pred             ccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhheeccCcCceeEE
Confidence            7 599999998754       34456788999999999999777899999999999999999999999999999999999


Q ss_pred             EEeCCCCEEEEEeCCCcEEEEEcCCcccccceeeeccCCCCCCCCCCcEEEEcCCCcEEEE-Ee----cCeEEEEEccCc
Q 001415          877 AFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VH----ETQLAIFETTKL  951 (1082)
Q Consensus       877 ~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~-~~----d~~i~iwd~~~~  951 (1082)
                      +|||||+.+|+.+.||+|+||+..+++.      ...++..+....-..|.|.-||+++++ +.    +++|.+||..+.
T Consensus       727 AWSpdGr~~AtVcKDg~~rVy~Prs~e~------pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l  800 (1012)
T KOG1445|consen  727 AWSPDGRRIATVCKDGTLRVYEPRSREQ------PVYEGKGPVGTRGARILWACDGRIVIVVGFDKSSERQVQMYDAQTL  800 (1012)
T ss_pred             EECCCCcceeeeecCceEEEeCCCCCCC------ccccCCCCccCcceeEEEEecCcEEEEecccccchhhhhhhhhhhc
Confidence            9999999999999999999999988543      222333222244568899999999988 44    467999998765


Q ss_pred             ce--eeeeccCCCCcceeEEEEcCCCc-eEEEeecCCcEEEEecCCcee
Q 001415          952 EC--VKQWVPRESSAPITHATFSCDSQ-LVYACFLDATVCVFSAANLKL  997 (1082)
Q Consensus       952 ~~--~~~~~~~~h~~~i~~l~~s~dg~-~l~t~s~dg~v~vwd~~~~~~  997 (1082)
                      ..  +.+...+. ...+.--.+.+|.. ++++|-.|..|.+|.+.-.+.
T Consensus       801 ~~~pl~t~~lDv-aps~LvP~YD~Ds~~lfltGKGD~~v~~yEv~~esP  848 (1012)
T KOG1445|consen  801 DLRPLYTQVLDV-APSPLVPHYDYDSNVLFLTGKGDRFVNMYEVIYESP  848 (1012)
T ss_pred             cCCcceeeeecc-cCccccccccCCCceEEEecCCCceEEEEEecCCCc
Confidence            42  22211111 11111223455654 567777899999999865554

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=99.97  E-value=5.3e-31  Score=255.59  Aligned_cols=277  Identities=17%  Similarity=0.300  Sum_probs=227.9

Q ss_pred             CCCceeEEEEecCCCeEEEEeCCCeEEEEEccCCceeeEEEEeeccccCeeEEEecCCCCceEEEEEeCCCcEEEEEccC
Q 001415          419 PGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATN  498 (1082)
Q Consensus       419 h~~~V~~l~~spdg~~las~~~d~~v~iwd~~~~~~~~~~~~~~~h~~~V~~l~fs~dg~~~~l~s~s~d~~i~vwd~~~  498 (1082)
                      ....|+|+.+  |...+++|..|++|+|||..+-.+++   .+.||++.|.|+.|.  .+  ++++|+.|.+|+|||+++
T Consensus       196 ~skgVYClQY--DD~kiVSGlrDnTikiWD~n~~~c~~---~L~GHtGSVLCLqyd--~r--viisGSSDsTvrvWDv~t  266 (499)
T KOG0281|consen  196 NSKGVYCLQY--DDEKIVSGLRDNTIKIWDKNSLECLK---ILTGHTGSVLCLQYD--ER--VIVSGSSDSTVRVWDVNT  266 (499)
T ss_pred             cCCceEEEEe--cchhhhcccccCceEEeccccHHHHH---hhhcCCCcEEeeecc--ce--EEEecCCCceEEEEeccC
Confidence            3458999987  67789999999999999999988777   789999999999995  44  899999999999999999


Q ss_pred             CceeEEeecCCcCeEEEeeeecCCceEEEEecCCCcEEEEecCCCCce---eeecCCCCceEEEEEccCCCeeeeccccc
Q 001415          499 GAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSR---VDYEAPGRWCTTMAYSADGTRTYQGFRKR  575 (1082)
Q Consensus       499 ~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~---~~~~~~~~~v~~~~~s~d~~~~~~~~~~~  575 (1082)
                      |+++.++-+|...|..+.|+.    .++++++.|.++.+||+......   ..+.+|...|..+.               
T Consensus       267 ge~l~tlihHceaVLhlrf~n----g~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVd---------------  327 (499)
T KOG0281|consen  267 GEPLNTLIHHCEAVLHLRFSN----GYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVD---------------  327 (499)
T ss_pred             CchhhHHhhhcceeEEEEEeC----CEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeec---------------
Confidence            999999999999999999852    48999999999999999875532   23344444444444               


Q ss_pred             ceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEecCCcccee
Q 001415          576 SLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLR  655 (1082)
Q Consensus       576 ~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~iwd~~~~~~~~~  655 (1082)
                            |+.  +++++++.|.+|++|++.+++++.++.+|..  .|.|+.+  .|+++++|+.|.+|++||+..| .+++
T Consensus       328 ------fd~--kyIVsASgDRTikvW~~st~efvRtl~gHkR--GIAClQY--r~rlvVSGSSDntIRlwdi~~G-~cLR  394 (499)
T KOG0281|consen  328 ------FDD--KYIVSASGDRTIKVWSTSTCEFVRTLNGHKR--GIACLQY--RDRLVVSGSSDNTIRLWDIECG-ACLR  394 (499)
T ss_pred             ------ccc--ceEEEecCCceEEEEeccceeeehhhhcccc--cceehhc--cCeEEEecCCCceEEEEecccc-HHHH
Confidence                  333  3899999999999999999999999987765  5656555  5899999999999999999999 8999


Q ss_pred             ecccccccccccccccCCCCccccCCCCceeeeccCCceeEEEecccCCCCcc----ccccccCcccccceeEEEEccCC
Q 001415          656 TFENLAYDASRTSENSKNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQC----RSLRLPENLRATKISRLIFTNSG  731 (1082)
Q Consensus       656 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~----~~~~~~~~~~~~~i~~~~~s~~~  731 (1082)
                      .+++|..-+.  ++.|         |.+.+++|+.||+|++||+.....+...    -...+.  .|.+.|..+.|.  .
T Consensus       395 vLeGHEeLvR--ciRF---------d~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv--~hsgRVFrLQFD--~  459 (499)
T KOG0281|consen  395 VLEGHEELVR--CIRF---------DNKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLV--EHSGRVFRLQFD--E  459 (499)
T ss_pred             HHhchHHhhh--heee---------cCceeeeccccceEEEEecccccCCcccccchHHHhhh--hccceeEEEeec--c
Confidence            9999988776  6666         7889999999999999999876544221    111222  278889888885  4


Q ss_pred             ceeeecccCCeEEEeecccc
Q 001415          732 NAILALASNAIHLLWKWQRT  751 (1082)
Q Consensus       732 ~~l~~~~~d~~i~iw~~~~~  751 (1082)
                      .++++++.|.+|.+||+...
T Consensus       460 fqIvsssHddtILiWdFl~~  479 (499)
T KOG0281|consen  460 FQIISSSHDDTILIWDFLNG  479 (499)
T ss_pred             eEEEeccCCCeEEEEEcCCC
Confidence            56999999999999998643

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=99.97  E-value=1.9e-30  Score=264.03  Aligned_cols=284  Identities=19%  Similarity=0.257  Sum_probs=239.0

Q ss_pred             ccccceeEEEEcc-CCceeeecccCCeEEEeeccccccCCCCCcccccCccccCCCCcceeecccCCCCCCCCccEEEee
Q 001415          717 LRATKISRLIFTN-SGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALS  795 (1082)
Q Consensus       717 ~~~~~i~~~~~s~-~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s  795 (1082)
                      +|...|+++.|.| .+..+++++.|+.|++|++-                   +  .+.+++..   .+|..+|..++|+
T Consensus       212 gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy-------------------~--~~~~lrtf---~gH~k~Vrd~~~s  267 (503)
T KOG0282|consen  212 GHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVY-------------------D--DRRCLRTF---KGHRKPVRDASFN  267 (503)
T ss_pred             CCccccchhhhccceeeEEEecCCCceEEEEEEe-------------------c--Ccceehhh---hcchhhhhhhhcc
Confidence            4999999999999 88999999999999999753                   3  33444432   2499999999999


Q ss_pred             cCCCeEEEee-CCeEEEEecCCCeeEEEECCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEecccceeeeeecccccCEE
Q 001415          796 KNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRIT  874 (1082)
Q Consensus       796 ~dg~~l~~~s-dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~  874 (1082)
                      ++|..+.+++ |+.|++||+++|+++..+. ....++|+.|.|++.+.+++|+.|+.|+.||+++++.+++...|-+.|.
T Consensus       268 ~~g~~fLS~sfD~~lKlwDtETG~~~~~f~-~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~  346 (503)
T KOG0282|consen  268 NCGTSFLSASFDRFLKLWDTETGQVLSRFH-LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAIL  346 (503)
T ss_pred             ccCCeeeeeecceeeeeeccccceEEEEEe-cCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhhee
Confidence            9999999888 8999999999999999997 4557899999996668999999999999999999999999999999999


Q ss_pred             EEEEeCCCCEEEEEeCCCcEEEEEcCCcccccceeeeccCCCCCCCCCCcEEEEcCCCcEEEE-EecCeEEEEEccCcce
Q 001415          875 GLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFETTKLEC  953 (1082)
Q Consensus       875 ~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~-~~d~~i~iwd~~~~~~  953 (1082)
                      .+.|-++|++++++++|++++||+....-...  .......     ....++..+|++.++++ +.|+.|.+|.+...-.
T Consensus       347 ~i~F~~~g~rFissSDdks~riWe~~~~v~ik--~i~~~~~-----hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r  419 (503)
T KOG0282|consen  347 DITFVDEGRRFISSSDDKSVRIWENRIPVPIK--NIADPEM-----HTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFR  419 (503)
T ss_pred             eeEEccCCceEeeeccCccEEEEEcCCCccch--hhcchhh-----ccCcceecCCCCCeehhhccCceEEEEecccccc
Confidence            99999999999999999999999998854322  2222222     33578999999999999 8999999998643221


Q ss_pred             ---eeeeccCCC--CcceeEEEEcCCCceEEEeecCCcEEEEecCCceeeeeeCCCeecCCCCCCCCceeeEEEEeCCCC
Q 001415          954 ---VKQWVPRES--SAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEP 1028 (1082)
Q Consensus       954 ---~~~~~~~~h--~~~i~~l~~s~dg~~l~t~s~dg~v~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~~~~~~~d~ 1028 (1082)
                         ...+.  +|  .+--..+.|||||++|++|+.||.+.+||..+-++++.+.       .|   .-..+.+.|+|...
T Consensus       420 ~nkkK~fe--Gh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lk-------ah---~~~ci~v~wHP~e~  487 (503)
T KOG0282|consen  420 LNKKKRFE--GHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLK-------AH---DQPCIGVDWHPVEP  487 (503)
T ss_pred             cCHhhhhc--ceeccCceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhccc-------cC---CcceEEEEecCCCc
Confidence               22233  55  4456778999999999999999999999999999999888       33   23356899999988


Q ss_pred             CeEEEEecCCcEEEEc
Q 001415         1029 NEFALGLSDGGVHVFE 1044 (1082)
Q Consensus      1029 ~~l~s~~~dg~v~vW~ 1044 (1082)
                      ..+|+++.||.|++|+
T Consensus       488 Skvat~~w~G~Ikiwd  503 (503)
T KOG0282|consen  488 SKVATCGWDGLIKIWD  503 (503)
T ss_pred             ceeEecccCceeEecC
Confidence            9999999999999996

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=99.97  E-value=1.1e-28  Score=268.29  Aligned_cols=284  Identities=25%  Similarity=0.433  Sum_probs=236.2

Q ss_pred             cCCCCCceEEEEecCCCeEEEEEcCCCcEEEEEccccceeeeeceeeeccCCCCcccccccccCCCCceeEEEEecCCCe
Q 001415          355 LNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSL  434 (1082)
Q Consensus       355 ~~h~~~v~~~~~spdg~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~  434 (1082)
                      .+|.++|++++|+|+++ ++++|+.||.|.+|++.+++....                   +..|...+.++.|+|++++
T Consensus         6 ~~h~~~i~~~~~~~~~~-~l~~~~~~g~i~i~~~~~~~~~~~-------------------~~~~~~~i~~~~~~~~~~~   65 (289)
T cd00200           6 KGHTGGVTCVAFSPDGK-LLATGSGDGTIKVWDLETGELLRT-------------------LKGHTGPVRDVAASADGTY   65 (289)
T ss_pred             cccCCCEEEEEEcCCCC-EEEEeecCcEEEEEEeeCCCcEEE-------------------EecCCcceeEEEECCCCCE
Confidence            36999999999999999 588899999999999988765442                   6678889999999999999


Q ss_pred             EEEEeCCCeEEEEEccCCceeeEEEEeeccccCeeEEEecCCCCceEEEEEeCCCcEEEEEccCCceeEEeecCCcCeEE
Q 001415          435 FGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYS  514 (1082)
Q Consensus       435 las~~~d~~v~iwd~~~~~~~~~~~~~~~h~~~V~~l~fs~dg~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~  514 (1082)
                      |++++.+|.|++|++.+++.+.   .+..|...|.++.|++++.  ++++++.|+.|++||+.+++....+..|...+.+
T Consensus        66 l~~~~~~~~i~i~~~~~~~~~~---~~~~~~~~i~~~~~~~~~~--~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~  140 (289)
T cd00200          66 LASGSSDKTIRLWDLETGECVR---TLTGHTSYVSSVAFSPDGR--ILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNS  140 (289)
T ss_pred             EEEEcCCCeEEEEEcCcccceE---EEeccCCcEEEEEEcCCCC--EEEEecCCCeEEEEECCCcEEEEEeccCCCcEEE
Confidence            9999999999999999876555   5778999999999999977  7888888999999999999999999999999999


Q ss_pred             EeeeecCCceEEEEecCCCcEEEEecCCCCceeeecCCCCceEEEEEccCCCeeeecccccceeEEEecCCCCEEEEEeC
Q 001415          515 VCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGD  594 (1082)
Q Consensus       515 ~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~  594 (1082)
                      ++|++.  +.++++++.|+.|++||+........+..+...+.++.|++++                     +.+++++.
T Consensus       141 ~~~~~~--~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~---------------------~~l~~~~~  197 (289)
T cd00200         141 VAFSPD--GTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDG---------------------EKLLSSSS  197 (289)
T ss_pred             EEEcCc--CCEEEEEcCCCcEEEEEccccccceeEecCccccceEEECCCc---------------------CEEEEecC
Confidence            999875  4688888889999999998766666555555555555555554                     47888888


Q ss_pred             CCeEEEEECCCcceEEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEecCCccceeecccccccccccccccCCC
Q 001415          595 DFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKNG  674 (1082)
Q Consensus       595 dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  674 (1082)
                      ++.|++||+.+++.+..+..+..  .+.+++|+|++.++++++.++.+++|+..++ .....+..               
T Consensus       198 ~~~i~i~d~~~~~~~~~~~~~~~--~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~-~~~~~~~~---------------  259 (289)
T cd00200         198 DGTIKLWDLSTGKCLGTLRGHEN--GVNSVAFSPDGYLLASGSEDGTIRVWDLRTG-ECVQTLSG---------------  259 (289)
T ss_pred             CCcEEEEECCCCceecchhhcCC--ceEEEEEcCCCcEEEEEcCCCcEEEEEcCCc-eeEEEccc---------------
Confidence            99999999999888887765543  6899999999989888888999999998764 22221111               


Q ss_pred             CccccCCCCceeeeccCCceeEEEecccCCCCccccccccCcccccceeEEEEccCCceeeecccCCeEEEee
Q 001415          675 DVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWK  747 (1082)
Q Consensus       675 ~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iw~  747 (1082)
                                                                 +...|.++.|++++..+++++.|+.+++|+
T Consensus       260 -------------------------------------------~~~~i~~~~~~~~~~~l~~~~~d~~i~iw~  289 (289)
T cd00200         260 -------------------------------------------HTNSVTSLAWSPDGKRLASGSADGTIRIWD  289 (289)
T ss_pred             -------------------------------------------cCCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence                                                       555788888999888888888899888884

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=99.97  E-value=2.2e-28  Score=265.76  Aligned_cols=284  Identities=27%  Similarity=0.435  Sum_probs=238.9

Q ss_pred             ccCCCCceeEEEEecCCCeEEEEeCCCeEEEEEccCCceeeEEEEeeccccCeeEEEecCCCCceEEEEEeCCCcEEEEE
Q 001415          416 VKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWD  495 (1082)
Q Consensus       416 ~~~h~~~V~~l~~spdg~~las~~~d~~v~iwd~~~~~~~~~~~~~~~h~~~V~~l~fs~dg~~~~l~s~s~d~~i~vwd  495 (1082)
                      +.+|.++|++++|+|++++|++++.||.|++|++.+++...   .+..|...+..+.|+|+++  ++++++.|+.|++||
T Consensus         5 ~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~---~~~~~~~~i~~~~~~~~~~--~l~~~~~~~~i~i~~   79 (289)
T cd00200           5 LKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLR---TLKGHTGPVRDVAASADGT--YLASGSSDKTIRLWD   79 (289)
T ss_pred             hcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEE---EEecCCcceeEEEECCCCC--EEEEEcCCCeEEEEE
Confidence            67899999999999999999999999999999999887544   6778999999999999997  799999999999999


Q ss_pred             ccCCceeEEeecCCcCeEEEeeeecCCceEEEEecCCCcEEEEecCCCCceeeecCCCCceEEEEEccCCCeeeeccccc
Q 001415          496 ATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKR  575 (1082)
Q Consensus       496 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~  575 (1082)
                      +.+++.+..+..|...+.++.|++.  +.++++++.|+.+++||+.+......+..+...+.++.+++++          
T Consensus        80 ~~~~~~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~----------  147 (289)
T cd00200          80 LETGECVRTLTGHTSYVSSVAFSPD--GRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDG----------  147 (289)
T ss_pred             cCcccceEEEeccCCcEEEEEEcCC--CCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcC----------
Confidence            9998899999999999999999765  4688888889999999998766666665555556666665554          


Q ss_pred             ceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEecCCcccee
Q 001415          576 SLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLR  655 (1082)
Q Consensus       576 ~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~iwd~~~~~~~~~  655 (1082)
                                 .++++++.++.|++||+.+++.+..+..+..  .+.+++|+|+++.+++++.++.+++||..++. ...
T Consensus       148 -----------~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~--~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~-~~~  213 (289)
T cd00200         148 -----------TFVASSSQDGTIKLWDLRTGKCVATLTGHTG--EVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGK-CLG  213 (289)
T ss_pred             -----------CEEEEEcCCCcEEEEEccccccceeEecCcc--ccceEEECCCcCEEEEecCCCcEEEEECCCCc-eec
Confidence                       4677777799999999998888888875543  68999999999999999999999999876431 000


Q ss_pred             ecccccccccccccccCCCCccccCCCCceeeeccCCceeEEEecccCCCCccccccccCcccccceeEEEEccCCceee
Q 001415          656 TFENLAYDASRTSENSKNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAIL  735 (1082)
Q Consensus       656 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~  735 (1082)
                      .+.                                                                             
T Consensus       214 ~~~-----------------------------------------------------------------------------  216 (289)
T cd00200         214 TLR-----------------------------------------------------------------------------  216 (289)
T ss_pred             chh-----------------------------------------------------------------------------
Confidence            000                                                                             


Q ss_pred             ecccCCeEEEeeccccccCCCCCcccccCccccCCCCcceeecccCCCCCCCCccEEEeecCCCeEEEee-CCeEEEEec
Q 001415          736 ALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNM  814 (1082)
Q Consensus       736 ~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~l~~~s-dg~i~iwd~  814 (1082)
                                                                      .|...+.+++|++++.++++++ ++.|++||+
T Consensus       217 ------------------------------------------------~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~  248 (289)
T cd00200         217 ------------------------------------------------GHENGVNSVAFSPDGYLLASGSEDGTIRVWDL  248 (289)
T ss_pred             ------------------------------------------------hcCCceEEEEEcCCCcEEEEEcCCCcEEEEEc
Confidence                                                            0445677888888888888888 899999999


Q ss_pred             CCCeeEEEECCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEe
Q 001415          815 MTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYN  856 (1082)
Q Consensus       815 ~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd  856 (1082)
                      .+++....+..|...+.+++|+| ++.+|++++.||.|++|+
T Consensus       249 ~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~i~iw~  289 (289)
T cd00200         249 RTGECVQTLSGHTNSVTSLAWSP-DGKRLASGSADGTIRIWD  289 (289)
T ss_pred             CCceeEEEccccCCcEEEEEECC-CCCEEEEecCCCeEEecC
Confidence            99899999988999999999999 889999999999999996

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=99.97  E-value=2.1e-29  Score=236.55  Aligned_cols=293  Identities=18%  Similarity=0.296  Sum_probs=229.3

Q ss_pred             cccCCCCceeEEEEecCCCeEEEEeCCCeEEEEEccCCceeeEEEEeeccccCeeEEEecCCCCceEEEEEeCCCcEEEE
Q 001415          415 LVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVW  494 (1082)
Q Consensus       415 ~~~~h~~~V~~l~~spdg~~las~~~d~~v~iwd~~~~~~~~~~~~~~~h~~~V~~l~fs~dg~~~~l~s~s~d~~i~vw  494 (1082)
                      .+.||..+++.+.++.+|.+|.+++.|.++.||-..+|+.+.   ++.||++.|+|++...+.+  .+++|+.|.++++|
T Consensus         5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlG---ty~GHtGavW~~Did~~s~--~liTGSAD~t~kLW   79 (327)
T KOG0643|consen    5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLG---TYDGHTGAVWCCDIDWDSK--HLITGSADQTAKLW   79 (327)
T ss_pred             ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceee---eecCCCceEEEEEecCCcc--eeeeccccceeEEE
Confidence            488999999999999999999999999999999999998777   8999999999999999999  79999999999999


Q ss_pred             EccCCceeEEeecCCcCeEEEeeeecCCceEEEEecCCCcEEEEecCCCCceeeecCCCCceEEEEEccCCCeeeecccc
Q 001415          495 DATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRK  574 (1082)
Q Consensus       495 d~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~  574 (1082)
                      |+++|+++..++ ...+|..+.|++.+  ++++.+..+ .+                                       
T Consensus        80 Dv~tGk~la~~k-~~~~Vk~~~F~~~g--n~~l~~tD~-~m---------------------------------------  116 (327)
T KOG0643|consen   80 DVETGKQLATWK-TNSPVKRVDFSFGG--NLILASTDK-QM---------------------------------------  116 (327)
T ss_pred             EcCCCcEEEEee-cCCeeEEEeeccCC--cEEEEEehh-hc---------------------------------------
Confidence            999999999988 56788888887655  344433321 10                                       


Q ss_pred             cceeEEEecCCCCEEEEEeCCCeEEEEECC-------CcceEEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEe
Q 001415          575 RSLGVVQFDTTKNRFLAAGDDFSIKFWDMD-------SVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILAT  647 (1082)
Q Consensus       575 ~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~-------~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~iwd~  647 (1082)
                                        +..+.|.++|++       ..++...+..+.  ..++.+-|+|-+++|++|..+|.|.+||.
T Consensus       117 ------------------g~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~--skit~a~Wg~l~~~ii~Ghe~G~is~~da  176 (327)
T KOG0643|consen  117 ------------------GYTCFVSVFDIRDDSSDIDSEEPYLKIPTPD--SKITSALWGPLGETIIAGHEDGSISIYDA  176 (327)
T ss_pred             ------------------CcceEEEEEEccCChhhhcccCceEEecCCc--cceeeeeecccCCEEEEecCCCcEEEEEc
Confidence                              112233344433       334444444443  36888999999999999999999999999


Q ss_pred             cCCccceeecccccccccccccccCCCCccccCCCCceeeeccCCceeEEEecccCCCCccccccccCcccccceeEEEE
Q 001415          648 SDGIRLLRTFENLAYDASRTSENSKNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIF  727 (1082)
Q Consensus       648 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  727 (1082)
                      .++.+.+...                                                                      
T Consensus       177 ~~g~~~v~s~----------------------------------------------------------------------  186 (327)
T KOG0643|consen  177 RTGKELVDSD----------------------------------------------------------------------  186 (327)
T ss_pred             ccCceeeech----------------------------------------------------------------------
Confidence            8873322100                                                                      


Q ss_pred             ccCCceeeecccCCeEEEeeccccccCCCCCcccccCccccCCCCcceeecccCCCCCCCCccEEEeecCCCeEEEee-C
Q 001415          728 TNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-G  806 (1082)
Q Consensus       728 s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~l~~~s-d  806 (1082)
                                                                             ..|...|+.+++++|..++++++ |
T Consensus       187 -------------------------------------------------------~~h~~~Ind~q~s~d~T~FiT~s~D  211 (327)
T KOG0643|consen  187 -------------------------------------------------------EEHSSKINDLQFSRDRTYFITGSKD  211 (327)
T ss_pred             -------------------------------------------------------hhhccccccccccCCcceEEecccC
Confidence                                                                   01667788888999999999998 6


Q ss_pred             CeEEEEecCCCeeEEEECCCCCCeeEEEEecCCCcEEEEEeCCC-------------cEEEEecccceeeeeecccccCE
Q 001415          807 GKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDS-------------SIQIYNVRVDEVKSKLKGHSKRI  873 (1082)
Q Consensus       807 g~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasg~~dg-------------~v~iwd~~~~~~~~~l~~h~~~V  873 (1082)
                      .+-++||..+.++++++. ...+|++.+++|.....+..|+.+.             .-+.|++-..+.+..+++|-++|
T Consensus       212 ttakl~D~~tl~v~Kty~-te~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPI  290 (327)
T KOG0643|consen  212 TTAKLVDVRTLEVLKTYT-TERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPI  290 (327)
T ss_pred             ccceeeeccceeeEEEee-ecccccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCc
Confidence            789999999999999887 4568999999994444444444332             12334444456677889999999


Q ss_pred             EEEEEeCCCCEEEEEeCCCcEEEEEcCC
Q 001415          874 TGLAFSHALNVLVSSGADSQLCVWSSDG  901 (1082)
Q Consensus       874 ~~l~~s~d~~~l~s~s~Dg~i~vwd~~~  901 (1082)
                      ++++|+|||+..+||+.||.|++.-++.
T Consensus       291 NsvAfhPdGksYsSGGEDG~VR~h~Fd~  318 (327)
T KOG0643|consen  291 NSVAFHPDGKSYSSGGEDGYVRLHHFDS  318 (327)
T ss_pred             ceeEECCCCcccccCCCCceEEEEEecc
Confidence            9999999999999999999999997765

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.97  E-value=2.1e-28  Score=299.59  Aligned_cols=311  Identities=14%  Similarity=0.224  Sum_probs=220.8

Q ss_pred             CCcEEEEEccccceeeeeceeeeccCCCCcccccccccCCCCceeEEEEecCCCeEEEEeCCCeEEEEEccCC----cee
Q 001415          380 VGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGG----DEV  455 (1082)
Q Consensus       380 dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d~~v~iwd~~~~----~~~  455 (1082)
                      +|.+++|+..+.......              ...-+..|.+.|.+++|+|||++||+|+.|+.|+||+....    ...
T Consensus       457 ~gl~~~~~~~~~~~~~~~--------------~~~~~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~  522 (793)
T PLN00181        457 EGLCKYLSFSKLRVKADL--------------KQGDLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDI  522 (793)
T ss_pred             hhhhhhhcccceEEEEee--------------ccccccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCccccccccc
Confidence            677888888764443210              01124569999999999999999999999999999998642    111


Q ss_pred             e-EEEEeeccccCeeEEEecCCCCceEEEEEeCCCcEEEEEccCCceeEEeecCCcCeEEEeeeecCCceEEEEecCCCc
Q 001415          456 R-QHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGK  534 (1082)
Q Consensus       456 ~-~~~~~~~h~~~V~~l~fs~dg~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~  534 (1082)
                      . ....+. +...|.+++|++.... +|++++.||+|++||+.+++.+..+.+|.+.|++++|++. ++.+|++|+.|+.
T Consensus       523 ~~~~~~~~-~~~~v~~l~~~~~~~~-~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~-~~~~L~Sgs~Dg~  599 (793)
T PLN00181        523 HYPVVELA-SRSKLSGICWNSYIKS-QVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSA-DPTLLASGSDDGS  599 (793)
T ss_pred             ccceEEec-ccCceeeEEeccCCCC-EEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCC-CCCEEEEEcCCCE
Confidence            1 111233 3468999999886433 7999999999999999999999999999999999998753 2356677766666


Q ss_pred             EEEEecCCCCceeeecCCCCceEEEEEccCCCeeeecccccceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEEec
Q 001415          535 IKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDA  614 (1082)
Q Consensus       535 i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~  614 (1082)
                      |++||+.                                                               ++..+..+..
T Consensus       600 v~iWd~~---------------------------------------------------------------~~~~~~~~~~  616 (793)
T PLN00181        600 VKLWSIN---------------------------------------------------------------QGVSIGTIKT  616 (793)
T ss_pred             EEEEECC---------------------------------------------------------------CCcEEEEEec
Confidence            6666654                                                               3333333332


Q ss_pred             CCCCCCcCeEEEc-CCCCEEEEEECCCcEEEEEecCCccceeecccccccccccccccCCCCccccCCCCceeeeccCCc
Q 001415          615 DGGLPASPRIRFN-KDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKNGDVRSLADVKPRITEESNDK  693 (1082)
Q Consensus       615 ~~~~~~i~~~~~s-~dg~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~  693 (1082)
                      +.   .+.++.|+ ++|.+|++|+.||.|++||+.+.......+.                                   
T Consensus       617 ~~---~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~-----------------------------------  658 (793)
T PLN00181        617 KA---NICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMI-----------------------------------  658 (793)
T ss_pred             CC---CeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEec-----------------------------------
Confidence            21   36778884 5799999999999999999865411110000                                   


Q ss_pred             eeEEEecccCCCCccccccccCcccccceeEEEEccCCceeeecccCCeEEEeeccccccCCCCCcccccCccccCCCCc
Q 001415          694 SKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSG  773 (1082)
Q Consensus       694 i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~  773 (1082)
                                             +|...|..+.|. ++..+++++.|                                 
T Consensus       659 -----------------------~h~~~V~~v~f~-~~~~lvs~s~D---------------------------------  681 (793)
T PLN00181        659 -----------------------GHSKTVSYVRFV-DSSTLVSSSTD---------------------------------  681 (793)
T ss_pred             -----------------------CCCCCEEEEEEe-CCCEEEEEECC---------------------------------
Confidence                                   033344444443 33344444444                                 


Q ss_pred             ceeecccCCCCCCCCccEEEeecCCCeEEEeeCCeEEEEecCC------CeeEEEECCCCCCeeEEEEecCCCcEEEEEe
Q 001415          774 IMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMT------FKTMATFMPPPPAATFLAFHPQDNNIIAIGM  847 (1082)
Q Consensus       774 ~~~~~~~~~~~~~~~i~~l~~s~dg~~l~~~sdg~i~iwd~~~------~~~~~~~~~~~~~v~~l~~sp~~~~~lasg~  847 (1082)
                                                       +.|++||+..      ...+..+.+|...+.+++|+| ++.+||+|+
T Consensus       682 ---------------------------------~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~-~~~~lasgs  727 (793)
T PLN00181        682 ---------------------------------NTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSV-SDGYIATGS  727 (793)
T ss_pred             ---------------------------------CEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcC-CCCEEEEEe
Confidence                                             4555555442      245677888999999999999 789999999


Q ss_pred             CCCcEEEEecccceeeee-------------ecccccCEEEEEEeCCCCEEEEEeCCCcEEEEEc
Q 001415          848 DDSSIQIYNVRVDEVKSK-------------LKGHSKRITGLAFSHALNVLVSSGADSQLCVWSS  899 (1082)
Q Consensus       848 ~dg~v~iwd~~~~~~~~~-------------l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~  899 (1082)
                      .||.|++|+......+..             ...|...|.+++|+|++..|++|+.||+|+||++
T Consensus       728 ~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~~~dG~I~i~~~  792 (793)
T PLN00181        728 ETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSSTLVAANSTGNIKILEM  792 (793)
T ss_pred             CCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCCCCeEEEecCCCcEEEEec
Confidence            999999999765433211             1345567999999999999999999999999986

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.97  E-value=2.3e-28  Score=299.20  Aligned_cols=305  Identities=14%  Similarity=0.183  Sum_probs=230.5

Q ss_pred             ecCCCCCceEEEEecCCCeEEEEEcCCCcEEEEEccccceeeeeceeeeccCCCCcccccccccCCCCceeEEEEec-CC
Q 001415          354 TLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP-DG  432 (1082)
Q Consensus       354 ~~~h~~~v~~~~~spdg~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~sp-dg  432 (1082)
                      +..|.+.|++++|+|+|+ ++|+|+.|+.|+|||..+......           ........+ .+...|.+++|+| ++
T Consensus       479 ~~~~~~~V~~i~fs~dg~-~latgg~D~~I~iwd~~~~~~~~~-----------~~~~~~~~~-~~~~~v~~l~~~~~~~  545 (793)
T PLN00181        479 LLNSSNLVCAIGFDRDGE-FFATAGVNKKIKIFECESIIKDGR-----------DIHYPVVEL-ASRSKLSGICWNSYIK  545 (793)
T ss_pred             ccCCCCcEEEEEECCCCC-EEEEEeCCCEEEEEECCccccccc-----------ccccceEEe-cccCceeeEEeccCCC
Confidence            345999999999999999 599999999999999864211000           000000012 2346899999988 58


Q ss_pred             CeEEEEeCCCeEEEEEccCCceeeEEEEeeccccCeeEEEecC-CCCceEEEEEeCCCcEEEEEccCCceeEEeecCCcC
Q 001415          433 SLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSH-PNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAP  511 (1082)
Q Consensus       433 ~~las~~~d~~v~iwd~~~~~~~~~~~~~~~h~~~V~~l~fs~-dg~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~  511 (1082)
                      .+||+++.||+|+|||+.+++.+.   .+.+|.+.|++++|+| ++.  +|++|+.|++|++||+.++..+..+..+ ..
T Consensus       546 ~~las~~~Dg~v~lWd~~~~~~~~---~~~~H~~~V~~l~~~p~~~~--~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~-~~  619 (793)
T PLN00181        546 SQVASSNFEGVVQVWDVARSQLVT---EMKEHEKRVWSIDYSSADPT--LLASGSDDGSVKLWSINQGVSIGTIKTK-AN  619 (793)
T ss_pred             CEEEEEeCCCeEEEEECCCCeEEE---EecCCCCCEEEEEEcCCCCC--EEEEEcCCCEEEEEECCCCcEEEEEecC-CC
Confidence            899999999999999999887665   6889999999999997 667  8999999999999999999999888855 67


Q ss_pred             eEEEeeeecCCceEEEEecCCCcEEEEecCCCC-ceeeecCCCCceEEEEEccCCCeeeecccccceeEEEecCCCCEEE
Q 001415          512 VYSVCPHHKENIQFIFSTALDGKIKAWLYDNLG-SRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFL  590 (1082)
Q Consensus       512 v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~-~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~i~~~~~~~~~~~l~  590 (1082)
                      |.++.|.+ +++.++++|+.||.|++||++... ....+..|...|..+.|. +                     +..++
T Consensus       620 v~~v~~~~-~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~---------------------~~~lv  676 (793)
T PLN00181        620 ICCVQFPS-ESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-D---------------------SSTLV  676 (793)
T ss_pred             eEEEEEeC-CCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-C---------------------CCEEE
Confidence            88888854 456899999999999999998754 334555566666666654 2                     34799


Q ss_pred             EEeCCCeEEEEECCCc------ceEEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEecCCccceeecccccccc
Q 001415          591 AAGDDFSIKFWDMDSV------QLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDA  664 (1082)
Q Consensus       591 ~~~~dg~i~iwd~~~~------~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~  664 (1082)
                      +++.|+.|++||+..+      .++..+.+|..  .+..++|++++.+|++|+.|+.|++|+...... ...+...... 
T Consensus       677 s~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~--~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~-~~s~~~~~~~-  752 (793)
T PLN00181        677 SSSTDNTLKLWDLSMSISGINETPLHSFMGHTN--VKNFVGLSVSDGYIATGSETNEVFVYHKAFPMP-VLSYKFKTID-  752 (793)
T ss_pred             EEECCCEEEEEeCCCCccccCCcceEEEcCCCC--CeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCc-eEEEecccCC-
Confidence            9999999999999743      45667766544  678899999999999999999999999765411 1111000000 


Q ss_pred             cccccccCCCCccccCCCCceeeeccCCceeEEEecccCCCCccccccccCcccccceeEEEEccCCceeeecccCCeEE
Q 001415          665 SRTSENSKNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHL  744 (1082)
Q Consensus       665 ~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~  744 (1082)
                                                                ....+..  ..+...|.+++|++++..+++++.+|.|+
T Consensus       753 ------------------------------------------~~~~~~~--~~~~~~V~~v~ws~~~~~lva~~~dG~I~  788 (793)
T PLN00181        753 ------------------------------------------PVSGLEV--DDASQFISSVCWRGQSSTLVAANSTGNIK  788 (793)
T ss_pred             ------------------------------------------ccccccc--CCCCcEEEEEEEcCCCCeEEEecCCCcEE
Confidence                                                      0000000  11556799999999999999999999999


Q ss_pred             Eeec
Q 001415          745 LWKW  748 (1082)
Q Consensus       745 iw~~  748 (1082)
                      +|++
T Consensus       789 i~~~  792 (793)
T PLN00181        789 ILEM  792 (793)
T ss_pred             EEec
Confidence            9975

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=99.97  E-value=6.2e-30  Score=245.68  Aligned_cols=291  Identities=19%  Similarity=0.295  Sum_probs=236.8

Q ss_pred             cccceeEEEEccCCceeeecccCCeEEEeeccccccCCCCCcccccCccccCCCCcceeecccCCCCCCCCccEEEeecC
Q 001415          718 RATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKN  797 (1082)
Q Consensus       718 ~~~~i~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~d  797 (1082)
                      ....+.+..|+|||+++++++-||.|.+|+...+....+-+.-+.         .....        +...|.|+.||.|
T Consensus       212 ~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAq---------d~fMM--------md~aVlci~FSRD  274 (508)
T KOG0275|consen  212 QKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQ---------DNFMM--------MDDAVLCISFSRD  274 (508)
T ss_pred             cccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhh---------cceee--------cccceEEEeeccc
Confidence            456678899999999999999999999999876654443332221         11111        6788999999999


Q ss_pred             CCeEEEee-CCeEEEEecCCCeeEEEEC-CCCCCeeEEEEecCCCcEEEEEeCCCcEEEEecccceeeeeecccccCEEE
Q 001415          798 DSYVMSAS-GGKISLFNMMTFKTMATFM-PPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITG  875 (1082)
Q Consensus       798 g~~l~~~s-dg~i~iwd~~~~~~~~~~~-~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~  875 (1082)
                      ...+|+|+ ||+|++|.+.+|.|++.|. .|...|+|+.||. |+..+.+++.|.+++|.-+.+|+++..++||++.|+.
T Consensus       275 sEMlAsGsqDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSr-D~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~  353 (508)
T KOG0275|consen  275 SEMLASGSQDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSR-DNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNE  353 (508)
T ss_pred             HHHhhccCcCCcEEEEEEecchHHHHhhhhhccCeeEEEEcc-CcchhhcccccceEEEeccccchhHHHhcCccccccc
Confidence            99999998 8999999999999999987 8999999999999 8888999999999999999999999999999999999


Q ss_pred             EEEeCCCCEEEEEeCCCcEEEEEcCCcccccceeeeccCCCCCCCCCCcEEEEcCC-CcEEEEE-ecCeEEEEEccCcce
Q 001415          876 LAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQD-QIHFLVV-HETQLAIFETTKLEC  953 (1082)
Q Consensus       876 l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspd-g~~l~~~-~d~~i~iwd~~~~~~  953 (1082)
                      ..|++||..+++++.||+|+||+.++.++..     .+.... ....|..+-.-|. -..++++ ..+++.|.++ .|+.
T Consensus       354 a~ft~dG~~iisaSsDgtvkvW~~KtteC~~-----Tfk~~~-~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~-qGQv  426 (508)
T KOG0275|consen  354 ATFTDDGHHIISASSDGTVKVWHGKTTECLS-----TFKPLG-TDYPVNSVILLPKNPEHFIVCNRSNTVYIMNM-QGQV  426 (508)
T ss_pred             eEEcCCCCeEEEecCCccEEEecCcchhhhh-----hccCCC-CcccceeEEEcCCCCceEEEEcCCCeEEEEec-cceE
Confidence            9999999999999999999999999966533     222111 1145666666664 3445554 5578888887 5777


Q ss_pred             eeeeccCCC-CcceeEEEEcCCCceEEEeecCCcEEEEecCCceeeeeeCCCeecCCCCCCCCceeeEEEEeCCCCCeEE
Q 001415          954 VKQWVPRES-SAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFA 1032 (1082)
Q Consensus       954 ~~~~~~~~h-~~~i~~l~~s~dg~~l~t~s~dg~v~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~~~~~~~d~~~l~ 1032 (1082)
                      ++.+..... .+...+.+.||.|.++++.++|+.++.|.+.+|++...+..+.-.          ++.++.+|. .+++|
T Consensus       427 VrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~VhEkd----------vIGl~HHPH-qNllA  495 (508)
T KOG0275|consen  427 VRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPVHEKD----------VIGLTHHPH-QNLLA  495 (508)
T ss_pred             EeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCceeeeeeccccc----------ccccccCcc-cchhh
Confidence            777764322 456677789999999999999999999999999999887743322          345788885 68999


Q ss_pred             EEecCCcEEEEc
Q 001415         1033 LGLSDGGVHVFE 1044 (1082)
Q Consensus      1033 s~~~dg~v~vW~ 1044 (1082)
                      +-++||.+++|.
T Consensus       496 sYsEDgllKLWk  507 (508)
T KOG0275|consen  496 SYSEDGLLKLWK  507 (508)
T ss_pred             hhcccchhhhcC
Confidence            999999999996

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=99.97  E-value=1.5e-28  Score=235.20  Aligned_cols=312  Identities=14%  Similarity=0.196  Sum_probs=228.4

Q ss_pred             eeeecCCCCCceEEEEecCCCeEEEEEcCCCcEEEEEccccceeee-eceeeeccCCCCcccccccccCCCCceeEEEEe
Q 001415          351 VTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVL-RNFKVWDLGACSMPLQAALVKDPGVSVNRVIWS  429 (1082)
Q Consensus       351 ~~~~~~h~~~v~~~~~spdg~~llasgs~dg~i~iwd~~~~~~~~~-~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s  429 (1082)
                      -..+..|++++.+.+|||||. |+|+|+.|..|+|.|++..-.... ..+..-+ .....|... .+-.|.++|+++.|.
T Consensus       105 t~ylt~HK~~cR~aafs~DG~-lvATGsaD~SIKildvermlaks~~~em~~~~-~qa~hPvIR-TlYDH~devn~l~FH  181 (430)
T KOG0640|consen  105 TKYLTSHKSPCRAAAFSPDGS-LVATGSADASIKILDVERMLAKSKPKEMISGD-TQARHPVIR-TLYDHVDEVNDLDFH  181 (430)
T ss_pred             eEEEeecccceeeeeeCCCCc-EEEccCCcceEEEeehhhhhhhcchhhhccCC-cccCCceEe-ehhhccCcccceeec
Confidence            346667999999999999999 799999999999999973111000 0000000 011112222 478899999999999


Q ss_pred             cCCCeEEEEeCCCeEEEEEccCCceeeEEEEeeccccCeeEEEecCCCCceEEEEEeCCCcEEEEEccCCceeEEe---e
Q 001415          430 PDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIF---E  506 (1082)
Q Consensus       430 pdg~~las~~~d~~v~iwd~~~~~~~~~~~~~~~h~~~V~~l~fs~dg~~~~l~s~s~d~~i~vwd~~~~~~~~~~---~  506 (1082)
                      |....|++|+.|++|+++|.......+....+ ....+|.++.|.|.|.  +|+.|....++++||+++-++...-   .
T Consensus       182 Pre~ILiS~srD~tvKlFDfsK~saKrA~K~~-qd~~~vrsiSfHPsGe--fllvgTdHp~~rlYdv~T~QcfvsanPd~  258 (430)
T KOG0640|consen  182 PRETILISGSRDNTVKLFDFSKTSAKRAFKVF-QDTEPVRSISFHPSGE--FLLVGTDHPTLRLYDVNTYQCFVSANPDD  258 (430)
T ss_pred             chhheEEeccCCCeEEEEecccHHHHHHHHHh-hccceeeeEeecCCCc--eEEEecCCCceeEEeccceeEeeecCccc
Confidence            99999999999999999999765433222122 3456899999999999  8999999999999999998887654   4


Q ss_pred             cCCcCeEEEeeeecCCceEEEEecCCCcEEEEecCCCCceeeecCCCCceEEEEEccCCCeeeecccccceeEEEecCCC
Q 001415          507 GHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTK  586 (1082)
Q Consensus       507 ~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~i~~~~~~~~~  586 (1082)
                      .|.+.|+++.+++  .+.+.++++.||.|++||--+.+++.++.                   ..|.+..+.+..|..++
T Consensus       259 qht~ai~~V~Ys~--t~~lYvTaSkDG~IklwDGVS~rCv~t~~-------------------~AH~gsevcSa~Ftkn~  317 (430)
T KOG0640|consen  259 QHTGAITQVRYSS--TGSLYVTASKDGAIKLWDGVSNRCVRTIG-------------------NAHGGSEVCSAVFTKNG  317 (430)
T ss_pred             ccccceeEEEecC--CccEEEEeccCCcEEeeccccHHHHHHHH-------------------hhcCCceeeeEEEccCC
Confidence            6899999998754  55799999999999999977665554332                   12333355666666666


Q ss_pred             CEEEEEeCCCeEEEEECCCcceEEEEecCCCCC---CcCeEEEcCCCCEEEEEEC-CCcEEEEEecCCccceeecccccc
Q 001415          587 NRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLP---ASPRIRFNKDGCLLAVSTN-DNGIKILATSDGIRLLRTFENLAY  662 (1082)
Q Consensus       587 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~---~i~~~~~s~dg~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~  662 (1082)
                      +++++.|.|..+++|.+.+++++..+.+.+...   .-+...|+....+++.-.. .+.+.-||.++..+.         
T Consensus       318 kyiLsSG~DS~vkLWEi~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~---------  388 (430)
T KOG0640|consen  318 KYILSSGKDSTVKLWEISTGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRV---------  388 (430)
T ss_pred             eEEeecCCcceeeeeeecCCceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhh---------
Confidence            799999999999999999999999987653221   1234456666666655432 456777777665221         


Q ss_pred             cccccccccCCCCccccCCCCceeeeccCCceeEEEecccCCCCccccccccCcccccceeEEEEccCCceeeecccCCe
Q 001415          663 DASRTSENSKNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAI  742 (1082)
Q Consensus       663 ~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~  742 (1082)
                                                      .+|.+                 +|.+.+..+.-+|.+..+++++.|..
T Consensus       389 --------------------------------~l~sl-----------------gHn~a~R~i~HSP~~p~FmTcsdD~r  419 (430)
T KOG0640|consen  389 --------------------------------ALLSL-----------------GHNGAVRWIVHSPVEPAFMTCSDDFR  419 (430)
T ss_pred             --------------------------------hhccc-----------------CCCCCceEEEeCCCCCceeeecccce
Confidence                                            12221                 28888899999999999999999999


Q ss_pred             EEEee
Q 001415          743 HLLWK  747 (1082)
Q Consensus       743 i~iw~  747 (1082)
                      .++|-
T Consensus       420 aRFWy  424 (430)
T KOG0640|consen  420 ARFWY  424 (430)
T ss_pred             eeeee
Confidence            99984

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=99.96  E-value=7.3e-28  Score=237.68  Aligned_cols=305  Identities=17%  Similarity=0.278  Sum_probs=229.3

Q ss_pred             cCCCCceeEEEEecCCCeEEEEeCCCeEEEEEccCCceeeEEEEeeccccCeeEEEecCCCC-ceEEEEEeCCCcEEEEE
Q 001415          417 KDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNK-QLCVITCGDDKTIKVWD  495 (1082)
Q Consensus       417 ~~h~~~V~~l~~spdg~~las~~~d~~v~iwd~~~~~~~~~~~~~~~h~~~V~~l~fs~dg~-~~~l~s~s~d~~i~vwd  495 (1082)
                      .-|.+.|.++...  +++|++|+.||.+++||..... ..   .+.||.++|.+++|--.+. .-.|++++.|.++++|-
T Consensus       102 ~~hdDWVSsv~~~--~~~IltgsYDg~~riWd~~Gk~-~~---~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~  175 (423)
T KOG0313|consen  102 FLHDDWVSSVKGA--SKWILTGSYDGTSRIWDLKGKS-IK---TIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWK  175 (423)
T ss_pred             ccchhhhhhhccc--CceEEEeecCCeeEEEecCCce-EE---EEecCCcceeeeEEEecCCccceEEEecCCceEEEEE
Confidence            4588999999887  8899999999999999988653 33   5889999999888843322 12599999999999999


Q ss_pred             ccCCce----eEEeecCCcCeEEEeeeecCCceEEEEecCCCcEEEEecCCCCceeeecCCCCc------eEEEEEccCC
Q 001415          496 ATNGAK----QYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRW------CTTMAYSADG  565 (1082)
Q Consensus       496 ~~~~~~----~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~------v~~~~~s~d~  565 (1082)
                      ++.+..    +....||...|.++...  ++|..+++|+.|.+|.+|+...... -.++.....      -..-.-....
T Consensus       176 ~~~~~~~~~~~~~~~GHk~~V~sVsv~--~sgtr~~SgS~D~~lkiWs~~~~~~-~~~E~~s~~rrk~~~~~~~~~~r~P  252 (423)
T KOG0313|consen  176 WNVGENKVKALKVCRGHKRSVDSVSVD--SSGTRFCSGSWDTMLKIWSVETDEE-DELESSSNRRRKKQKREKEGGTRTP  252 (423)
T ss_pred             ecCchhhhhHHhHhcccccceeEEEec--CCCCeEEeecccceeeecccCCCcc-ccccccchhhhhhhhhhhcccccCc
Confidence            987754    34456999999999875  4557999999999999999322110 000000000      0000000000


Q ss_pred             CeeeecccccceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEE
Q 001415          566 TRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKIL  645 (1082)
Q Consensus       566 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~iw  645 (1082)
                      ..++.||.. .+..+.|++ ...+++++.|.+|+.||+.++..+..+....   .+.++.++|..++|++|+.|..+++|
T Consensus       253 ~vtl~GHt~-~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~~~k---sl~~i~~~~~~~Ll~~gssdr~irl~  327 (423)
T KOG0313|consen  253 LVTLEGHTE-PVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLTTNK---SLNCISYSPLSKLLASGSSDRHIRLW  327 (423)
T ss_pred             eEEeccccc-ceeeEEEcC-CCceEeecccceEEEEEeecccceeeeecCc---ceeEeecccccceeeecCCCCceeec
Confidence            022333333 566666666 4578999999999999999999988886544   47899999999999999999999999


Q ss_pred             EecCCccceeecccccccccccccccCCCCccccCCCCceeeeccCCceeEEEecccCCCCccccccccCcccccceeEE
Q 001415          646 ATSDGIRLLRTFENLAYDASRTSENSKNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRL  725 (1082)
Q Consensus       646 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~  725 (1082)
                      |.+++..                                                                         
T Consensus       328 DPR~~~g-------------------------------------------------------------------------  334 (423)
T KOG0313|consen  328 DPRTGDG-------------------------------------------------------------------------  334 (423)
T ss_pred             CCCCCCC-------------------------------------------------------------------------
Confidence            8765410                                                                         


Q ss_pred             EEccCCceeeecccCCeEEEeeccccccCCCCCcccccCccccCCCCcceeecccCCCCCCCCccEEEeecCCCeEEEee
Q 001415          726 IFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS  805 (1082)
Q Consensus       726 ~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~l~~~s  805 (1082)
                                                                                                      
T Consensus       335 --------------------------------------------------------------------------------  334 (423)
T KOG0313|consen  335 --------------------------------------------------------------------------------  334 (423)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCeEEEEecCCCeeEEEECCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEecccce-eeeeecccccCEEEEEEeCCCCE
Q 001415          806 GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDE-VKSKLKGHSKRITGLAFSHALNV  884 (1082)
Q Consensus       806 dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~-~~~~l~~h~~~V~~l~~s~d~~~  884 (1082)
                                 .-...++.+|.+-|.++.|+|.+..+|++|+.|+++++||+++.+ .+..+.+|...|.++.|+ ++..
T Consensus       335 -----------s~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~-~~~~  402 (423)
T KOG0313|consen  335 -----------SVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWN-EGGL  402 (423)
T ss_pred             -----------ceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEecc-CCce
Confidence                       001234556777888888888788899999999999999999877 899999999999999997 6779


Q ss_pred             EEEEeCCCcEEEEEcC
Q 001415          885 LVSSGADSQLCVWSSD  900 (1082)
Q Consensus       885 l~s~s~Dg~i~vwd~~  900 (1082)
                      +++||.|.+|+++.-.
T Consensus       403 IvSGGaD~~l~i~~~~  418 (423)
T KOG0313|consen  403 IVSGGADNKLRIFKGS  418 (423)
T ss_pred             EEeccCcceEEEeccc
Confidence            9999999999998654

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.96  E-value=1.6e-26  Score=211.20  Aligned_cols=319  Identities=16%  Similarity=0.240  Sum_probs=238.6

Q ss_pred             ceeeecCCCCCceEEEEecCCCeEEEEEcCCCcEEEEEccccceeeeeceeeeccCCCCcccccccccCCCCceeEEEEe
Q 001415          350 TVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWS  429 (1082)
Q Consensus       350 ~~~~~~~h~~~v~~~~~spdg~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s  429 (1082)
                      ..+.++.....|.+++|+|.|. |.|+|+...+.+|-.+..-..++.    ..+.....+....+-.+.|.+.|.|.+||
T Consensus        24 ~~i~~l~dsqairav~fhp~g~-lyavgsnskt~ric~yp~l~~~r~----~hea~~~pp~v~~kr~khhkgsiyc~~ws   98 (350)
T KOG0641|consen   24 EAINILEDSQAIRAVAFHPAGG-LYAVGSNSKTFRICAYPALIDLRH----AHEAAKQPPSVLCKRNKHHKGSIYCTAWS   98 (350)
T ss_pred             EEEEEecchhheeeEEecCCCc-eEEeccCCceEEEEccccccCccc----ccccccCCCeEEeeeccccCccEEEEEec
Confidence            3567778899999999999999 799999999998876643222210    00001111111222357899999999999


Q ss_pred             cCCCeEEEEeCCCeEEEEEcc--CCceeeEEEEeeccccCeeEEEecCC---CCceEEEEEe-CCCcEEEEEccCCceeE
Q 001415          430 PDGSLFGVAYSRHIVQIYSYH--GGDEVRQHLEIDAHVGGVNDIAFSHP---NKQLCVITCG-DDKTIKVWDATNGAKQY  503 (1082)
Q Consensus       430 pdg~~las~~~d~~v~iwd~~--~~~~~~~~~~~~~h~~~V~~l~fs~d---g~~~~l~s~s-~d~~i~vwd~~~~~~~~  503 (1082)
                      |+|++||+|+.|.+|++.-..  +........++.-|.+.|..++|..+   +.. +|++++ .|..|.+-|..+|+..+
T Consensus        99 ~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~-il~s~gagdc~iy~tdc~~g~~~~  177 (350)
T KOG0641|consen   99 PCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGA-ILASAGAGDCKIYITDCGRGQGFH  177 (350)
T ss_pred             CccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCce-EEEecCCCcceEEEeecCCCCcce
Confidence            999999999999999986554  44444444578889999999999654   222 666655 57889999999999999


Q ss_pred             EeecCCcCeEEEeeeecCCceEEEEecCCCcEEEEecCCCCceeeecCCCCceEEEEEccCCCeeeecccccceeEEEec
Q 001415          504 IFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFD  583 (1082)
Q Consensus       504 ~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~i~~~~~~  583 (1082)
                      .+.||++.|.++--   =++.++++|+.|.+|++||++-...+..+...              .--.|-....+..++.+
T Consensus       178 a~sghtghilalys---wn~~m~~sgsqdktirfwdlrv~~~v~~l~~~--------------~~~~glessavaav~vd  240 (350)
T KOG0641|consen  178 ALSGHTGHILALYS---WNGAMFASGSQDKTIRFWDLRVNSCVNTLDND--------------FHDGGLESSAVAAVAVD  240 (350)
T ss_pred             eecCCcccEEEEEE---ecCcEEEccCCCceEEEEeeeccceeeeccCc--------------ccCCCcccceeEEEEEC
Confidence            99999999988742   23468999999999999999865544433211              01112223467778888


Q ss_pred             CCCCEEEEEeCCCeEEEEECCCcceEEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEecCCccceeeccccccc
Q 001415          584 TTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYD  663 (1082)
Q Consensus       584 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~  663 (1082)
                      |.|+.|++|-.|....+||++.++.++.+..|..  .|.++.|+|...++++++.|..|++-|++...  .+.+     +
T Consensus       241 psgrll~sg~~dssc~lydirg~r~iq~f~phsa--dir~vrfsp~a~yllt~syd~~ikltdlqgdl--a~el-----~  311 (350)
T KOG0641|consen  241 PSGRLLASGHADSSCMLYDIRGGRMIQRFHPHSA--DIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDL--AHEL-----P  311 (350)
T ss_pred             CCcceeeeccCCCceEEEEeeCCceeeeeCCCcc--ceeEEEeCCCceEEEEecccceEEEeecccch--hhcC-----c
Confidence            8888999999999999999999999999987765  79999999999999999999999999886441  1111     0


Q ss_pred             ccccccccCCCCccccCCCCceeeeccCCceeEEEecccCCCCccccccccCcccccceeEEEEccCCceeeecccCCeE
Q 001415          664 ASRTSENSKNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIH  743 (1082)
Q Consensus       664 ~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i  743 (1082)
                      +                    ++++                            .|..++..+.|.|..-.+++.+.|.+.
T Consensus       312 ~--------------------~vv~----------------------------ehkdk~i~~rwh~~d~sfisssadkt~  343 (350)
T KOG0641|consen  312 I--------------------MVVA----------------------------EHKDKAIQCRWHPQDFSFISSSADKTA  343 (350)
T ss_pred             e--------------------EEEE----------------------------eccCceEEEEecCccceeeeccCcceE
Confidence            0                    0010                            077778888999998889999999999


Q ss_pred             EEeec
Q 001415          744 LLWKW  748 (1082)
Q Consensus       744 ~iw~~  748 (1082)
                      .+|.+
T Consensus       344 tlwa~  348 (350)
T KOG0641|consen  344 TLWAL  348 (350)
T ss_pred             EEecc
Confidence            99954

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=99.96  E-value=2.9e-27  Score=222.35  Aligned_cols=301  Identities=12%  Similarity=0.114  Sum_probs=236.8

Q ss_pred             eeecCCCCCceEEEEecCCCeEEEEEcCCCcEEEEEccccceeeeeceeeeccCCCCcccccccccCCCCceeEEEEecC
Q 001415          352 TRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPD  431 (1082)
Q Consensus       352 ~~~~~h~~~v~~~~~spdg~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spd  431 (1082)
                      +.+.+|..+++.+.|+.+|. ||++++.|.++.||-..+|+.+.+                   +.||++.|+|++.+-+
T Consensus         4 i~l~GHERplTqiKyN~eGD-LlFscaKD~~~~vw~s~nGerlGt-------------------y~GHtGavW~~Did~~   63 (327)
T KOG0643|consen    4 ILLQGHERPLTQIKYNREGD-LLFSCAKDSTPTVWYSLNGERLGT-------------------YDGHTGAVWCCDIDWD   63 (327)
T ss_pred             cccccCccccceEEecCCCc-EEEEecCCCCceEEEecCCceeee-------------------ecCCCceEEEEEecCC
Confidence            35667999999999999999 799999999999999999999985                   8899999999999999


Q ss_pred             CCeEEEEeCCCeEEEEEccCCceeeEEEEeeccccCeeEEEecCCCCceEEEEEe-----CCCcEEEEEcc-------CC
Q 001415          432 GSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCG-----DDKTIKVWDAT-------NG  499 (1082)
Q Consensus       432 g~~las~~~d~~v~iwd~~~~~~~~~~~~~~~h~~~V~~l~fs~dg~~~~l~s~s-----~d~~i~vwd~~-------~~  499 (1082)
                      .+++++|+.|.++++||+++|+++..   +. -..+|..+.|+++|..  ++.+.     ..+.|.++|++       +.
T Consensus        64 s~~liTGSAD~t~kLWDv~tGk~la~---~k-~~~~Vk~~~F~~~gn~--~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~  137 (327)
T KOG0643|consen   64 SKHLITGSADQTAKLWDVETGKQLAT---WK-TNSPVKRVDFSFGGNL--ILASTDKQMGYTCFVSVFDIRDDSSDIDSE  137 (327)
T ss_pred             cceeeeccccceeEEEEcCCCcEEEE---ee-cCCeeEEEeeccCCcE--EEEEehhhcCcceEEEEEEccCChhhhccc
Confidence            99999999999999999999998873   32 4568999999999993  33332     34679999998       45


Q ss_pred             ceeEEeecCCcCeEEEeeeecCCceEEEEecCCCcEEEEecCCCCcee-eecCCCCceEEEEEccCCCeeeeccccccee
Q 001415          500 AKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRV-DYEAPGRWCTTMAYSADGTRTYQGFRKRSLG  578 (1082)
Q Consensus       500 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~-~~~~~~~~v~~~~~s~d~~~~~~~~~~~~i~  578 (1082)
                      ++...+..+...++.+.|.+.+  ++|++|..||.|.+||++++.... ....|...|..+.+++|..            
T Consensus       138 ep~~kI~t~~skit~a~Wg~l~--~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T------------  203 (327)
T KOG0643|consen  138 EPYLKIPTPDSKITSALWGPLG--ETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRT------------  203 (327)
T ss_pred             CceEEecCCccceeeeeecccC--CEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcc------------
Confidence            6688888889999999998766  699999999999999999875544 4456666777777777766            


Q ss_pred             EEEecCCCCEEEEEeCCCeEEEEECCCcceEEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEecCCccceeecc
Q 001415          579 VVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFE  658 (1082)
Q Consensus       579 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~iwd~~~~~~~~~~~~  658 (1082)
                               ++++++.|.+-++||..+-+.++++....   ++++.+++|-...++.|+.....   |+.+.......++
T Consensus       204 ---------~FiT~s~Dttakl~D~~tl~v~Kty~te~---PvN~aaisP~~d~VilgGGqeA~---dVTTT~~r~GKFE  268 (327)
T KOG0643|consen  204 ---------YFITGSKDTTAKLVDVRTLEVLKTYTTER---PVNTAAISPLLDHVILGGGQEAM---DVTTTSTRAGKFE  268 (327)
T ss_pred             ---------eEEecccCccceeeeccceeeEEEeeecc---cccceecccccceEEecCCceee---eeeeecccccchh
Confidence                     89999999999999999999999987654   68999999988888877653332   2222111111111


Q ss_pred             cccccccccccccCCCCccccCCCCceeeeccCCceeEEEecccCCCCccccccccCcccccceeEEEEccCCceeeecc
Q 001415          659 NLAYDASRTSENSKNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALA  738 (1082)
Q Consensus       659 ~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~  738 (1082)
                      .                                   +.|++--.+.....       .+|-++|.+++|+|+|+..++++
T Consensus       269 A-----------------------------------rFyh~i~eEEigrv-------kGHFGPINsvAfhPdGksYsSGG  306 (327)
T KOG0643|consen  269 A-----------------------------------RFYHLIFEEEIGRV-------KGHFGPINSVAFHPDGKSYSSGG  306 (327)
T ss_pred             h-----------------------------------hHHHHHHHHHhccc-------cccccCcceeEECCCCcccccCC
Confidence            1                                   11111111111111       23999999999999999999999


Q ss_pred             cCCeEEEeecc
Q 001415          739 SNAIHLLWKWQ  749 (1082)
Q Consensus       739 ~d~~i~iw~~~  749 (1082)
                      .||.|++.-++
T Consensus       307 EDG~VR~h~Fd  317 (327)
T KOG0643|consen  307 EDGYVRLHHFD  317 (327)
T ss_pred             CCceEEEEEec
Confidence            99999997554

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=99.96  E-value=1.1e-28  Score=229.21  Aligned_cols=306  Identities=16%  Similarity=0.245  Sum_probs=253.9

Q ss_pred             CcccccceeEEEEc---cCCceeeecccCCeEEEeeccccccCCCCCcccccCccccCCCCcceeecccCCCCCCCCccE
Q 001415          715 ENLRATKISRLIFT---NSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPC  791 (1082)
Q Consensus       715 ~~~~~~~i~~~~~s---~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  791 (1082)
                      ..+|..+|..++|+   |+|-+|++++.|+.-.+-                      +-.+|.-+...   .+|.+.|.+
T Consensus        10 c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr----------------------~g~tgdwigtf---eghkgavw~   64 (334)
T KOG0278|consen   10 CHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLR----------------------NGDTGDWIGTF---EGHKGAVWS   64 (334)
T ss_pred             EcCCCcceeEEeccCCCCCceEEEEeccCCCchhc----------------------cCCCCCcEEee---eccCcceee
Confidence            35599999999997   588889999998754432                      33445444432   249999999


Q ss_pred             EEeecCCCeEEEee-CCeEEEEecCCCeeEEEECCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEecccc-eeeeeeccc
Q 001415          792 FALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVD-EVKSKLKGH  869 (1082)
Q Consensus       792 l~~s~dg~~l~~~s-dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~-~~~~~l~~h  869 (1082)
                      .++..+....|+++ |=+-++||.-+|..+..+. |..-|.+++|+. |.++|++|+.+..+||||++.. ....++.+|
T Consensus        65 ~~l~~na~~aasaaadftakvw~a~tgdelhsf~-hkhivk~~af~~-ds~~lltgg~ekllrvfdln~p~App~E~~gh  142 (334)
T KOG0278|consen   65 ATLNKNATRAASAAADFTAKVWDAVTGDELHSFE-HKHIVKAVAFSQ-DSNYLLTGGQEKLLRVFDLNRPKAPPKEISGH  142 (334)
T ss_pred             eecCchhhhhhhhcccchhhhhhhhhhhhhhhhh-hhheeeeEEecc-cchhhhccchHHHhhhhhccCCCCCchhhcCC
Confidence            99999888888887 6779999999999999987 888999999999 8999999999999999999865 345778999


Q ss_pred             ccCEEEEEEeCCCCEEEEEeCCCcEEEEEcCCcccccceeeeccCCCCCCCCCCcEEEEcCCCcEEEEEecCeEEEEEcc
Q 001415          870 SKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETT  949 (1082)
Q Consensus       870 ~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~~d~~i~iwd~~  949 (1082)
                      .+.|..+.|....+.++|++.|++||+||..++...+...  ..       ..|+++..++||++|.++..+.|.+||.+
T Consensus       143 tg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~--~~-------s~VtSlEvs~dG~ilTia~gssV~Fwdak  213 (334)
T KOG0278|consen  143 TGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLE--FN-------SPVTSLEVSQDGRILTIAYGSSVKFWDAK  213 (334)
T ss_pred             CCcceeEEEeccCceEEeeccCCceEEEEeccCcEEEEEe--cC-------CCCcceeeccCCCEEEEecCceeEEeccc
Confidence            9999999999999999999999999999999976533222  11       46899999999999999999999999999


Q ss_pred             CcceeeeeccCCCCcceeEEEEcCCCceEEEeecCCcEEEEecCCceeeeeeCCCeecCCCCCCCCceeeEEEEeCCCCC
Q 001415          950 KLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPN 1029 (1082)
Q Consensus       950 ~~~~~~~~~~~~h~~~i~~l~~s~dg~~l~t~s~dg~v~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~~~~~~~d~~ 1029 (1082)
                      +...+..+..   ...|.+..++|+...+++|++|..++.||+.+|+.+....      .||.+   .+.++.|+| ||.
T Consensus       214 sf~~lKs~k~---P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~n------kgh~g---pVhcVrFSP-dGE  280 (334)
T KOG0278|consen  214 SFGLLKSYKM---PCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYN------KGHFG---PVHCVRFSP-DGE  280 (334)
T ss_pred             cccceeeccC---ccccccccccCCCceEEecCcceEEEEEeccCCceeeecc------cCCCC---ceEEEEECC-CCc
Confidence            9999888775   4579999999999999999999999999999999997642      14422   244999999 799


Q ss_pred             eEEEEecCCcEEEEccCCCC--CccccCCCCCCCCCCCCCCC
Q 001415         1030 EFALGLSDGGVHVFEPLESE--GKWGVPPPVDNGSTSSMPAT 1069 (1082)
Q Consensus      1030 ~l~s~~~dg~v~vW~~~~~~--~~~~~~~~~~~~~~~~~~~~ 1069 (1082)
                      ..++|++||+|++|....++  +.|.-..|-+.|.-.+.|+.
T Consensus       281 ~yAsGSEDGTirlWQt~~~~~~~~~~~~~~ed~~eev~s~~e  322 (334)
T KOG0278|consen  281 LYASGSEDGTIRLWQTTPGKTYGLWKCVKPEDDGEEVASPKE  322 (334)
T ss_pred             eeeccCCCceEEEEEecCCCchhhccccChhhhccccccccc
Confidence            99999999999999998888  56777777766665554443

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=99.96  E-value=1.8e-27  Score=234.98  Aligned_cols=291  Identities=15%  Similarity=0.260  Sum_probs=233.2

Q ss_pred             CcceeeecCCCCCceEEEEecCCCeEEEEEcCCCcEEEEEccccceeeeeceeeeccCCCCcccccccccCCCCceeEEE
Q 001415          348 PKTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVI  427 (1082)
Q Consensus       348 ~~~~~~~~~h~~~v~~~~~spdg~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~  427 (1082)
                      +++-...+.|.+.|.++...  +++ +++|+.||.++|||.. |+...                   .+.||+++|.+++
T Consensus        95 aP~pl~~~~hdDWVSsv~~~--~~~-IltgsYDg~~riWd~~-Gk~~~-------------------~~~Ght~~ik~v~  151 (423)
T KOG0313|consen   95 APKPLQCFLHDDWVSSVKGA--SKW-ILTGSYDGTSRIWDLK-GKSIK-------------------TIVGHTGPIKSVA  151 (423)
T ss_pred             CCCccccccchhhhhhhccc--Cce-EEEeecCCeeEEEecC-CceEE-------------------EEecCCcceeeeE
Confidence            45556778899999999999  564 9999999999999986 44443                   2789999999888


Q ss_pred             EecCC---CeEEEEeCCCeEEEEEccCCceee-EEEEeeccccCeeEEEecCCCCceEEEEEeCCCcEEEEEccC-----
Q 001415          428 WSPDG---SLFGVAYSRHIVQIYSYHGGDEVR-QHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATN-----  498 (1082)
Q Consensus       428 ~spdg---~~las~~~d~~v~iwd~~~~~~~~-~~~~~~~h~~~V~~l~fs~dg~~~~l~s~s~d~~i~vwd~~~-----  498 (1082)
                      |---.   ..+++++.|.++++|.++.++... ....-.||...|-+++..++|.  .+++|+.|.+|.||+..+     
T Consensus       152 ~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgt--r~~SgS~D~~lkiWs~~~~~~~~  229 (423)
T KOG0313|consen  152 WVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGT--RFCSGSWDTMLKIWSVETDEEDE  229 (423)
T ss_pred             EEecCCccceEEEecCCceEEEEEecCchhhhhHHhHhcccccceeEEEecCCCC--eEEeecccceeeecccCCCcccc
Confidence            75433   359999999999999998775432 1113459999999999999999  799999999999999321     


Q ss_pred             --------------------CceeEEeecCCcCeEEEeeeecCCceEEEEecCCCcEEEEecCCCCceeeecCCCCceEE
Q 001415          499 --------------------GAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTT  558 (1082)
Q Consensus       499 --------------------~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~  558 (1082)
                                          +.++.++.||..+|.++.|.+ .  ..+++++.|.+|+.||+.++.....+..       
T Consensus       230 ~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d-~--~v~yS~SwDHTIk~WDletg~~~~~~~~-------  299 (423)
T KOG0313|consen  230 LESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD-A--TVIYSVSWDHTIKVWDLETGGLKSTLTT-------  299 (423)
T ss_pred             ccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcC-C--CceEeecccceEEEEEeecccceeeeec-------
Confidence                                235667889999999999975 3  5899999999999999998766544332       


Q ss_pred             EEEccCCCeeeecccccceeEEEecCCCCEEEEEeCCCeEEEEECCCcc---eEEEEecCCCCCCcCeEEEcC-CCCEEE
Q 001415          559 MAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQ---LLTSIDADGGLPASPRIRFNK-DGCLLA  634 (1082)
Q Consensus       559 ~~~s~d~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~---~~~~~~~~~~~~~i~~~~~s~-dg~~l~  634 (1082)
                                     ...+.++.++|..+.+++|+.|..|++||.+++.   ....+.+|..  .|.++.|+| +...|+
T Consensus       300 ---------------~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~n--wVssvkwsp~~~~~~~  362 (423)
T KOG0313|consen  300 ---------------NKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKN--WVSSVKWSPTNEFQLV  362 (423)
T ss_pred             ---------------CcceeEeecccccceeeecCCCCceeecCCCCCCCceeEEeeecchh--hhhheecCCCCceEEE
Confidence                           2255566666666799999999999999998764   2345555544  899999999 556788


Q ss_pred             EEECCCcEEEEEecCCccceeecccccccccccccccCCCCccccCCCCceeeeccCCceeEEEec
Q 001415          635 VSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKNGDVRSLADVKPRITEESNDKSKVWKLT  700 (1082)
Q Consensus       635 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~iw~~~  700 (1082)
                      +++.|+++++||+++....+..+.+|...+.  ++.|        .++..+++|+.|.+++++...
T Consensus       363 S~S~D~t~klWDvRS~k~plydI~~h~DKvl--~vdW--------~~~~~IvSGGaD~~l~i~~~~  418 (423)
T KOG0313|consen  363 SGSYDNTVKLWDVRSTKAPLYDIAGHNDKVL--SVDW--------NEGGLIVSGGADNKLRIFKGS  418 (423)
T ss_pred             EEecCCeEEEEEeccCCCcceeeccCCceEE--EEec--------cCCceEEeccCcceEEEeccc
Confidence            9999999999999999778888888877766  5555        467789999999999998754

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=6.7e-28  Score=263.84  Aligned_cols=302  Identities=17%  Similarity=0.228  Sum_probs=209.6

Q ss_pred             CCCCCceEEEEecCCCeEEEEEcCCCcEEEEEccccceeeeeceeeeccCCCCcccccccccCCCCceeEEEEec---CC
Q 001415          356 NQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP---DG  432 (1082)
Q Consensus       356 ~h~~~v~~~~~spdg~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~sp---dg  432 (1082)
                      .|++.||++.||+||+| ||+|+.||.|+||.+...+....      +.........  .+.. .+.+..+..++   .+
T Consensus       265 ah~gaIw~mKFS~DGKy-LAsaGeD~virVWkVie~e~~~~------~~~~~~~~~~--~~~~-~s~~~p~~s~~~~~~~  334 (712)
T KOG0283|consen  265 AHKGAIWAMKFSHDGKY-LASAGEDGVIRVWKVIESERMRV------AEGDSSCMYF--EYNA-NSQIEPSTSSEEKISS  334 (712)
T ss_pred             ccCCcEEEEEeCCCCce-eeecCCCceEEEEEEeccchhcc------cccccchhhh--hhhh-ccccCccccccccccc
Confidence            59999999999999995 99999999999999976443211      0000000000  0000 00011111111   11


Q ss_pred             C--eEEEEeCCCeEEEEEccCCceeeEEEEeeccccCeeEEEecCCCCceEEEEEeCCCcEEEEEccCCceeEEeecCCc
Q 001415          433 S--LFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEA  510 (1082)
Q Consensus       433 ~--~las~~~d~~v~iwd~~~~~~~~~~~~~~~h~~~V~~l~fs~dg~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~  510 (1082)
                      +  ....+.....+.+-+..-.-.-.++..+.||.+.|.++.||.++   +|++++.|++||+|++....|++.|. |.+
T Consensus       335 ~~s~~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~---fLLSSSMDKTVRLWh~~~~~CL~~F~-Hnd  410 (712)
T KOG0283|consen  335 RTSSSRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNN---FLLSSSMDKTVRLWHPGRKECLKVFS-HND  410 (712)
T ss_pred             cccccccccCCccccCCCccccccccchhhhhccchhheecccccCC---eeEeccccccEEeecCCCcceeeEEe-cCC
Confidence            1  11112222222221111111112334789999999999999877   69999999999999999999999998 999


Q ss_pred             CeEEEeeeecCCceEEEEecCCCcEEEEecCCCCceeeecCCCCceEEEEEccCCCeeeecccccceeEEEecCCCCEEE
Q 001415          511 PVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFL  590 (1082)
Q Consensus       511 ~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~i~~~~~~~~~~~l~  590 (1082)
                      .|+|++|+|..| +++++|+.|+.+|||++...+... +..-..-|+++                     +|.|+|+..+
T Consensus       411 fVTcVaFnPvDD-ryFiSGSLD~KvRiWsI~d~~Vv~-W~Dl~~lITAv---------------------cy~PdGk~av  467 (712)
T KOG0283|consen  411 FVTCVAFNPVDD-RYFISGSLDGKVRLWSISDKKVVD-WNDLRDLITAV---------------------CYSPDGKGAV  467 (712)
T ss_pred             eeEEEEecccCC-CcEeecccccceEEeecCcCeeEe-ehhhhhhheeE---------------------EeccCCceEE
Confidence            999999999877 799999999999999987533322 22222444444                     4555555899


Q ss_pred             EEeCCCeEEEEECCCcceEEEEecCCC------CCCcCeEEEcC-CCCEEEEEECCCcEEEEEecCCccceeeccccccc
Q 001415          591 AAGDDFSIKFWDMDSVQLLTSIDADGG------LPASPRIRFNK-DGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYD  663 (1082)
Q Consensus       591 ~~~~dg~i~iwd~~~~~~~~~~~~~~~------~~~i~~~~~s~-dg~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~  663 (1082)
                      +|+.+|.+++|+....+.......+.+      ...|+.+.|.| +...+++.+.|..|+|+|.++. .++..+.+....
T Consensus       468 IGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~-~lv~KfKG~~n~  546 (712)
T KOG0283|consen  468 IGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDK-DLVHKFKGFRNT  546 (712)
T ss_pred             EEEeccEEEEEEccCCeEEEeeeEeeccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccch-hhhhhhcccccC
Confidence            999999999999988877665543221      12699999998 4456888899999999999766 677777776665


Q ss_pred             ccccccccCCCCccccCCCCceeeeccCCceeEEEeccc
Q 001415          664 ASRTSENSKNGDVRSLADVKPRITEESNDKSKVWKLTEL  702 (1082)
Q Consensus       664 ~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~iw~~~~~  702 (1082)
                      .......|       +.||+++++++.|..|++|++...
T Consensus       547 ~SQ~~Asf-------s~Dgk~IVs~seDs~VYiW~~~~~  578 (712)
T KOG0283|consen  547 SSQISASF-------SSDGKHIVSASEDSWVYIWKNDSF  578 (712)
T ss_pred             CcceeeeE-------ccCCCEEEEeecCceEEEEeCCCC
Confidence            55445555       889999999999999999998653

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=99.96  E-value=7.6e-26  Score=219.62  Aligned_cols=289  Identities=21%  Similarity=0.374  Sum_probs=224.2

Q ss_pred             cccCCCCceeEEEEecCCCeEEEEeCCCeEEEEEccCCceeeEEEEeeccccCeeEEEecCCCCceEEEEEeC--CCcEE
Q 001415          415 LVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGD--DKTIK  492 (1082)
Q Consensus       415 ~~~~h~~~V~~l~~spdg~~las~~~d~~v~iwd~~~~~~~~~~~~~~~h~~~V~~l~fs~dg~~~~l~s~s~--d~~i~  492 (1082)
                      .+..-.+.|+++.|+++|.+|++++.|.+++|||..+++.++   ++..+...|..+.|......  ++.++.  |.+||
T Consensus         9 ~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~---ti~skkyG~~~~~Fth~~~~--~i~sStk~d~tIr   83 (311)
T KOG1446|consen    9 VFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVK---TINSKKYGVDLACFTHHSNT--VIHSSTKEDDTIR   83 (311)
T ss_pred             ccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceee---EeecccccccEEEEecCCce--EEEccCCCCCceE
Confidence            456677899999999999999999999999999999999877   67777889999999888774  555554  88999


Q ss_pred             EEEccCCceeEEeecCCcCeEEEeeeecCCceEEEEecCCCcEEEEecCCCCceeeecCCCCceEEEEEccCCCeeeecc
Q 001415          493 VWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGF  572 (1082)
Q Consensus       493 vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~  572 (1082)
                      .-++.+.+.++.|.||...|.+++.+|.+  ..+++++.|++|++||++                               
T Consensus        84 yLsl~dNkylRYF~GH~~~V~sL~~sP~~--d~FlS~S~D~tvrLWDlR-------------------------------  130 (311)
T KOG1446|consen   84 YLSLHDNKYLRYFPGHKKRVNSLSVSPKD--DTFLSSSLDKTVRLWDLR-------------------------------  130 (311)
T ss_pred             EEEeecCceEEEcCCCCceEEEEEecCCC--CeEEecccCCeEEeeEec-------------------------------
Confidence            99999999999999999999999987765  355666555555555554                               


Q ss_pred             cccceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEecCCcc
Q 001415          573 RKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIR  652 (1082)
Q Consensus       573 ~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~iwd~~~~~~  652 (1082)
                                                      ..++...+....    -..+||.|+|-++|++...+.|++||++.-..
T Consensus       131 --------------------------------~~~cqg~l~~~~----~pi~AfDp~GLifA~~~~~~~IkLyD~Rs~dk  174 (311)
T KOG1446|consen  131 --------------------------------VKKCQGLLNLSG----RPIAAFDPEGLIFALANGSELIKLYDLRSFDK  174 (311)
T ss_pred             --------------------------------CCCCceEEecCC----CcceeECCCCcEEEEecCCCeEEEEEecccCC
Confidence                                            444443333222    24588999999999988888999998764310


Q ss_pred             ceeecccccccccccccccCCCCccccCCCCceeeeccCCceeEEEecccCCCCccccccccCcccccceeEEEEccCCc
Q 001415          653 LLRTFENLAYDASRTSENSKNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGN  732 (1082)
Q Consensus       653 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~  732 (1082)
                                                                                         ++-..  |..+  
T Consensus       175 -------------------------------------------------------------------gPF~t--f~i~--  183 (311)
T KOG1446|consen  175 -------------------------------------------------------------------GPFTT--FSIT--  183 (311)
T ss_pred             -------------------------------------------------------------------CCcee--EccC--
Confidence                                                                               00000  0000  


Q ss_pred             eeeecccCCeEEEeeccccccCCCCCcccccCccccCCCCcceeecccCCCCCCCCccEEEeecCCCeEEEeeC-CeEEE
Q 001415          733 AILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASG-GKISL  811 (1082)
Q Consensus       733 ~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~l~~~sd-g~i~i  811 (1082)
                                                                        .+.....+.+.|||||++++.+.+ +.+++
T Consensus       184 --------------------------------------------------~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~  213 (311)
T KOG1446|consen  184 --------------------------------------------------DNDEAEWTDLEFSPDGKSILLSTNASFIYL  213 (311)
T ss_pred             --------------------------------------------------CCCccceeeeEEcCCCCEEEEEeCCCcEEE
Confidence                                                              002344567888999998887764 77899


Q ss_pred             EecCCCeeEEEECCCCCC---eeEEEEecCCCcEEEEEeCCCcEEEEecccceeeeeecc-cccCEEEEEEeCCCCEEEE
Q 001415          812 FNMMTFKTMATFMPPPPA---ATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKG-HSKRITGLAFSHALNVLVS  887 (1082)
Q Consensus       812 wd~~~~~~~~~~~~~~~~---v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~-h~~~V~~l~~s~d~~~l~s  887 (1082)
                      .|.-+|....++..+...   ....+|+| |++++.+|+.||+|.+|++++|..+..+++ +.+++.++.|+|.-.+++|
T Consensus       214 lDAf~G~~~~tfs~~~~~~~~~~~a~ftP-ds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~~~mf~s  292 (311)
T KOG1446|consen  214 LDAFDGTVKSTFSGYPNAGNLPLSATFTP-DSKFVLSGSDDGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNPRYAMFVS  292 (311)
T ss_pred             EEccCCcEeeeEeeccCCCCcceeEEECC-CCcEEEEecCCCcEEEEEcCCCcEeeEecCCCCCCccccccCCceeeeee
Confidence            999999988888776544   36789999 999999999999999999999999999998 7999999999998877777


Q ss_pred             EeCCCcEEEEEcCC
Q 001415          888 SGADSQLCVWSSDG  901 (1082)
Q Consensus       888 ~s~Dg~i~vwd~~~  901 (1082)
                      +  +..+.+|=...
T Consensus       293 a--~s~l~fw~p~~  304 (311)
T KOG1446|consen  293 A--SSNLVFWLPDE  304 (311)
T ss_pred             c--CceEEEEeccc
Confidence            6  45688886654

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.96  E-value=3.2e-27  Score=239.25  Aligned_cols=295  Identities=17%  Similarity=0.229  Sum_probs=233.4

Q ss_pred             eeeecCCCCCceEEEEecCCCeEEEEEcCCCcEEEEEccccceeeeeceeeecc----CCCCcccccccccCCCCceeEE
Q 001415          351 VTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDL----GACSMPLQAALVKDPGVSVNRV  426 (1082)
Q Consensus       351 ~~~~~~h~~~v~~~~~spdg~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~d~----~~~~~~~~~~~~~~h~~~V~~l  426 (1082)
                      ......|.-+|.||+++||+++ .++++.+|+|.=|++.+|+....    +|.-    .....+.+..- .+|...|.++
T Consensus       135 ~~~~~~H~~s~~~vals~d~~~-~fsask~g~i~kw~v~tgk~~~~----i~~~~ev~k~~~~~~k~~r-~~h~keil~~  208 (479)
T KOG0299|consen  135 FRVIGKHQLSVTSVALSPDDKR-VFSASKDGTILKWDVLTGKKDRY----IIERDEVLKSHGNPLKESR-KGHVKEILTL  208 (479)
T ss_pred             ceeeccccCcceEEEeeccccc-eeecCCCcceeeeehhcCccccc----ccccchhhhhccCCCCccc-ccccceeEEE
Confidence            3455569999999999999996 99999999999999999986521    1111    00112222211 4899999999


Q ss_pred             EEecCCCeEEEEeCCCeEEEEEccCCceeeEEEEeeccccCeeEEEecCCCCceEEEEEeCCCcEEEEEccCCceeEEee
Q 001415          427 IWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFE  506 (1082)
Q Consensus       427 ~~spdg~~las~~~d~~v~iwd~~~~~~~~~~~~~~~h~~~V~~l~fs~dg~~~~l~s~s~d~~i~vwd~~~~~~~~~~~  506 (1082)
                      +.||||+|||+|+.|..|.||+..+.+.++   .+.+|.+.|.+++|-....  -+++++.|++|++|+++....+.++-
T Consensus       209 avS~Dgkylatgg~d~~v~Iw~~~t~ehv~---~~~ghr~~V~~L~fr~gt~--~lys~s~Drsvkvw~~~~~s~vetly  283 (479)
T KOG0299|consen  209 AVSSDGKYLATGGRDRHVQIWDCDTLEHVK---VFKGHRGAVSSLAFRKGTS--ELYSASADRSVKVWSIDQLSYVETLY  283 (479)
T ss_pred             EEcCCCcEEEecCCCceEEEecCcccchhh---cccccccceeeeeeecCcc--ceeeeecCCceEEEehhHhHHHHHHh
Confidence            999999999999999999999999998777   6899999999999987666  58999999999999999999999999


Q ss_pred             cCCcCeEEEeeeecCCceEEEEecCCCcEEEEecCCCCceeeecCCCCceEEEEEccCCCeeeecccccceeEEEecCCC
Q 001415          507 GHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTK  586 (1082)
Q Consensus       507 ~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~i~~~~~~~~~  586 (1082)
                      ||.+.|.++......  ..+.+|+.|+++++|++. .+....+.++.+.+.+++|-.+.                     
T Consensus       284 GHqd~v~~IdaL~re--R~vtVGgrDrT~rlwKi~-eesqlifrg~~~sidcv~~In~~---------------------  339 (479)
T KOG0299|consen  284 GHQDGVLGIDALSRE--RCVTVGGRDRTVRLWKIP-EESQLIFRGGEGSIDCVAFINDE---------------------  339 (479)
T ss_pred             CCccceeeechhccc--ceEEeccccceeEEEecc-ccceeeeeCCCCCeeeEEEeccc---------------------
Confidence            999999999765433  566666699999999994 44555666666666666665544                     


Q ss_pred             CEEEEEeCCCeEEEEECCCcceEEEEecCCC----------CCCcCeEEEcCCCCEEEEEECCCcEEEEEecCCccceee
Q 001415          587 NRFLAAGDDFSIKFWDMDSVQLLTSIDADGG----------LPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRT  656 (1082)
Q Consensus       587 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~----------~~~i~~~~~s~dg~~l~~~~~dg~i~iwd~~~~~~~~~~  656 (1082)
                       +|++|+.+|.|.+|++...+++.+.....+          ..+|++++..|...++++|+.+|.|++|.+.++.+.+..
T Consensus       340 -HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~  418 (479)
T KOG0299|consen  340 -HFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINL  418 (479)
T ss_pred             -ceeeccCCceEEEeeecccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccce
Confidence             599999999999999999988876643211          126889999999999999999999999999998666555


Q ss_pred             cccccccccccccccCCCCccccCCCCceeee
Q 001415          657 FENLAYDASRTSENSKNGDVRSLADVKPRITE  688 (1082)
Q Consensus       657 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~  688 (1082)
                      +..........+++|       +.+|+.+++|
T Consensus       419 l~~ls~~GfVNsl~f-------~~sgk~ivag  443 (479)
T KOG0299|consen  419 LYSLSLVGFVNSLAF-------SNSGKRIVAG  443 (479)
T ss_pred             eeecccccEEEEEEE-------ccCCCEEEEe
Confidence            554444433335555       8888876665

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=99.95  E-value=6.7e-28  Score=240.44  Aligned_cols=296  Identities=18%  Similarity=0.263  Sum_probs=241.7

Q ss_pred             CCCCcceeeecC-CCCCceEEEEecCCCeEEEEEcCCCcEEEEEccccceeeeeceeeeccCCCCcccccccccCCCCce
Q 001415          345 EDLPKTVTRTLN-QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSV  423 (1082)
Q Consensus       345 ~~~~~~~~~~~~-h~~~v~~~~~spdg~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V  423 (1082)
                      +.+|......+. |.++|..+.|-++... |++|+.|..|.+|++..++.-.                 ...+.|..+.|
T Consensus       161 ~~lpS~~~~~ld~h~gev~~v~~l~~sdt-latgg~Dr~Ik~W~v~~~k~~~-----------------~~tLaGs~g~i  222 (459)
T KOG0288|consen  161 DTLPSRALFVLDAHEGEVHDVEFLRNSDT-LATGGSDRIIKLWNVLGEKSEL-----------------ISTLAGSLGNI  222 (459)
T ss_pred             cccchhhhhhhhccccccceeEEccCcch-hhhcchhhhhhhhhcccchhhh-----------------hhhhhccCCCc
Confidence            334555545454 9999999999999774 9999999999999998766221                 11377888999


Q ss_pred             eEEEEecCCCeEEEEeCCCeEEEEEccCCceeeEEEEeeccccCeeEEEecCCCCceEEEEEeCCCcEEEEEccCCceeE
Q 001415          424 NRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQY  503 (1082)
Q Consensus       424 ~~l~~spdg~~las~~~d~~v~iwd~~~~~~~~~~~~~~~h~~~V~~l~fs~dg~~~~l~s~s~d~~i~vwd~~~~~~~~  503 (1082)
                      +.+.|.++++++++++.|+.+++|++.......   ++.||++.|+++.|.....  .+++|+.|.+|++||+..+.|.+
T Consensus       223 t~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~---TLsGHtdkVt~ak~~~~~~--~vVsgs~DRtiK~WDl~k~~C~k  297 (459)
T KOG0288|consen  223 TSIDFDSDNKHVIAASNDKNLRLWNVDSLRLRH---TLSGHTDKVTAAKFKLSHS--RVVSGSADRTIKLWDLQKAYCSK  297 (459)
T ss_pred             ceeeecCCCceEEeecCCCceeeeeccchhhhh---hhcccccceeeehhhcccc--ceeeccccchhhhhhhhhhheec
Confidence            999999999999999999999999999987666   8999999999999988776  59999999999999999999888


Q ss_pred             EeecCCcCeEEEeeeecCCceEEEEecCCCcEEEEecCCCCceeeecCCCCceEEEEEccCCCeeeecccccceeEEEec
Q 001415          504 IFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFD  583 (1082)
Q Consensus       504 ~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~i~~~~~~  583 (1082)
                      ++- ....+..++..    ...+++|-.|+.|++||.++.........++ .|+++..+++|.                 
T Consensus       298 t~l-~~S~cnDI~~~----~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg-~vtSl~ls~~g~-----------------  354 (459)
T KOG0288|consen  298 TVL-PGSQCNDIVCS----ISDVISGHFDKKVRFWDIRSADKTRSVPLGG-RVTSLDLSMDGL-----------------  354 (459)
T ss_pred             ccc-ccccccceEec----ceeeeecccccceEEEeccCCceeeEeecCc-ceeeEeeccCCe-----------------
Confidence            765 33445555543    2578999999999999999888777766655 677777666665                 


Q ss_pred             CCCCEEEEEeCCCeEEEEECCCcceEEEEecCCC--CCCcCeEEEcCCCCEEEEEECCCcEEEEEecCCccceeeccccc
Q 001415          584 TTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGG--LPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLA  661 (1082)
Q Consensus       584 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~--~~~i~~~~~s~dg~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~  661 (1082)
                          .+++++.|.++.+.|+++.+....+...+.  ....+.+.|||++.|+++|+.||.|+||++.++ ++...+....
T Consensus       355 ----~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tg-KlE~~l~~s~  429 (459)
T KOG0288|consen  355 ----ELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTG-KLEKVLSLST  429 (459)
T ss_pred             ----EEeeecCCCceeeeecccccEEEEeeccccccccccceeEECCCCceeeeccCCCcEEEEEccCc-eEEEEeccCC
Confidence                788899999999999999998888865542  234788999999999999999999999999998 5655555544


Q ss_pred             ccccccccccCCCCccccCCCCceeeeccCCceeEEE
Q 001415          662 YDASRTSENSKNGDVRSLADVKPRITEESNDKSKVWK  698 (1082)
Q Consensus       662 ~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~iw~  698 (1082)
                      ......++.|       .+.|..+++++.++.+.+|.
T Consensus       430 s~~aI~s~~W-------~~sG~~Llsadk~~~v~lW~  459 (459)
T KOG0288|consen  430 SNAAITSLSW-------NPSGSGLLSADKQKAVTLWT  459 (459)
T ss_pred             CCcceEEEEE-------cCCCchhhcccCCcceEecC
Confidence            4422226777       89999999999999999983

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.95  E-value=1.3e-26  Score=236.90  Aligned_cols=286  Identities=17%  Similarity=0.264  Sum_probs=236.7

Q ss_pred             cccceeEEEEccCCceeeecccCCeEEEeeccccccCCCCCcccccCccccCCCCcceeecccCCCCCCCCccEEEeecC
Q 001415          718 RATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKN  797 (1082)
Q Consensus       718 ~~~~i~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~d  797 (1082)
                      ..+.|.+++|+|...+=++.+..-.+.+|+.....                      ......   .....+.+++|-.|
T Consensus        25 e~~~vssl~fsp~~P~d~aVt~S~rvqly~~~~~~----------------------~~k~~s---rFk~~v~s~~fR~D   79 (487)
T KOG0310|consen   25 EHNSVSSLCFSPKHPYDFAVTSSVRVQLYSSVTRS----------------------VRKTFS---RFKDVVYSVDFRSD   79 (487)
T ss_pred             ccCcceeEecCCCCCCceEEecccEEEEEecchhh----------------------hhhhHH---hhccceeEEEeecC
Confidence            56789999999987665555566667777543221                      111111   15678999999999


Q ss_pred             CCeEEEeeC-CeEEEEecCCCeeEEEECCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEecccceeeeeecccccCEEEE
Q 001415          798 DSYVMSASG-GKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGL  876 (1082)
Q Consensus       798 g~~l~~~sd-g~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l  876 (1082)
                      |+++|+|.+ |.|+|||..+...++.+..|..++..+.|+|+++..+++|++|+.+++||+.+......+.+|++.|.|.
T Consensus        80 G~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g  159 (487)
T KOG0310|consen   80 GRLLAAGDESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCG  159 (487)
T ss_pred             CeEEEccCCcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEee
Confidence            999999985 9999999888778889999999999999999999999999999999999999998877999999999999


Q ss_pred             EEeCCC-CEEEEEeCCCcEEEEEcCCcccccceeeeccCCCCCCCCCCcEEEEcCCCcEEEEEecCeEEEEEccCcceee
Q 001415          877 AFSHAL-NVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVK  955 (1082)
Q Consensus       877 ~~s~d~-~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~~d~~i~iwd~~~~~~~~  955 (1082)
                      +|+|-. .+++|||.||+|++||+....   ........+     .+|..+.|-|.|..+|++....++|||+.+|....
T Consensus       160 ~~~~~~~hivvtGsYDg~vrl~DtR~~~---~~v~elnhg-----~pVe~vl~lpsgs~iasAgGn~vkVWDl~~G~qll  231 (487)
T KOG0310|consen  160 DISPANDHIVVTGSYDGKVRLWDTRSLT---SRVVELNHG-----CPVESVLALPSGSLIASAGGNSVKVWDLTTGGQLL  231 (487)
T ss_pred             ccccCCCeEEEecCCCceEEEEEeccCC---ceeEEecCC-----CceeeEEEcCCCCEEEEcCCCeEEEEEecCCceeh
Confidence            999865 489999999999999998842   234444444     56899999999999999999999999999776655


Q ss_pred             eeccCCCCcceeEEEEcCCCceEEEeecCCcEEEEecCCceeeeeeCCCeecCCCCCCCCceeeEEEEeCCCCCeEEEEe
Q 001415          956 QWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGL 1035 (1082)
Q Consensus       956 ~~~~~~h~~~i~~l~~s~dg~~l~t~s~dg~v~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~~~~~~~d~~~l~s~~ 1035 (1082)
                      .... .|...|+|+++..|+..|++|+-|+.|+|||+.+.+.+..+.    .|..       .++++-+| |++.++.|.
T Consensus       232 ~~~~-~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~----~~~p-------vLsiavs~-dd~t~viGm  298 (487)
T KOG0310|consen  232 TSMF-NHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWK----YPGP-------VLSIAVSP-DDQTVVIGM  298 (487)
T ss_pred             hhhh-cccceEEEEEeecCCceEeecccccceEEEEccceEEEEeee----cccc-------eeeEEecC-CCceEEEec
Confidence            4442 489999999999999999999999999999999999998877    3332       45788888 578999999


Q ss_pred             cCCcEEEEccCCCC
Q 001415         1036 SDGGVHVFEPLESE 1049 (1082)
Q Consensus      1036 ~dg~v~vW~~~~~~ 1049 (1082)
                      .||.+.+=+....+
T Consensus       299 snGlv~~rr~~~k~  312 (487)
T KOG0310|consen  299 SNGLVSIRRREVKK  312 (487)
T ss_pred             ccceeeeehhhccc
Confidence            99999887666655

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=99.95  E-value=2.1e-26  Score=215.96  Aligned_cols=276  Identities=16%  Similarity=0.242  Sum_probs=227.0

Q ss_pred             EeeccccCeeEEEecCCCCceEEEEEeCCCcEEEEEccCCceeEE--eecCCcCeEEEeeeecCCceEEEEecCCCcEEE
Q 001415          460 EIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYI--FEGHEAPVYSVCPHHKENIQFIFSTALDGKIKA  537 (1082)
Q Consensus       460 ~~~~h~~~V~~l~fs~dg~~~~l~s~s~d~~i~vwd~~~~~~~~~--~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~i  537 (1082)
                      .+.+|...|.+++|+.+|.  .|++|+.|+++.+|+++..+....  ..+|.+.|-.++|++... ..+++++.|.+|++
T Consensus        15 ~~~~~~~~v~Sv~wn~~g~--~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~-d~~atas~dk~ir~   91 (313)
T KOG1407|consen   15 ELQGHVQKVHSVAWNCDGT--KLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHP-DLFATASGDKTIRI   91 (313)
T ss_pred             HhhhhhhcceEEEEcccCc--eeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCC-cceEEecCCceEEE
Confidence            4678999999999999999  799999999999999998765543  468999999999988655 68999999999999


Q ss_pred             EecCCCCceeeecCCCCceEEEEEccCCCeeeecccccceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEEecCCC
Q 001415          538 WLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGG  617 (1082)
Q Consensus       538 wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~  617 (1082)
                      ||.+..++..........+                      .+.|+|+|+++++++.|..|.+.|.++.+.+...+... 
T Consensus        92 wd~r~~k~~~~i~~~~eni----------------------~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~~-  148 (313)
T KOG1407|consen   92 WDIRSGKCTARIETKGENI----------------------NITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQFKF-  148 (313)
T ss_pred             EEeccCcEEEEeeccCcce----------------------EEEEcCCCCEEEEecCcccEEEEEecccceeehhcccc-
Confidence            9999888776655444333                      24555666699999999999999999988877665443 


Q ss_pred             CCCcCeEEEcCCCCEEEEEECCCcEEEEEecCCccceeecccccccccccccccCCCCccccCCCCceeeeccCCceeEE
Q 001415          618 LPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKNGDVRSLADVKPRITEESNDKSKVW  697 (1082)
Q Consensus       618 ~~~i~~~~~s~dg~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~iw  697 (1082)
                        .+..++|+-++.+++.....|.|.|...... +                                             
T Consensus       149 --e~ne~~w~~~nd~Fflt~GlG~v~ILsypsL-k---------------------------------------------  180 (313)
T KOG1407|consen  149 --EVNEISWNNSNDLFFLTNGLGCVEILSYPSL-K---------------------------------------------  180 (313)
T ss_pred             --eeeeeeecCCCCEEEEecCCceEEEEecccc-c---------------------------------------------
Confidence              3677888877777777666677776643211 0                                             


Q ss_pred             EecccCCCCccccccccCcccccceeEEEEccCCceeeecccCCeEEEeeccccccCCCCCcccccCccccCCCCcceee
Q 001415          698 KLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMT  777 (1082)
Q Consensus       698 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  777 (1082)
                                             ++.++                                                    
T Consensus       181 -----------------------pv~si----------------------------------------------------  185 (313)
T KOG1407|consen  181 -----------------------PVQSI----------------------------------------------------  185 (313)
T ss_pred             -----------------------ccccc----------------------------------------------------
Confidence                                   00000                                                    


Q ss_pred             cccCCCCCCCCccEEEeecCCCeEEEee-CCeEEEEecCCCeeEEEECCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEe
Q 001415          778 NDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYN  856 (1082)
Q Consensus       778 ~~~~~~~~~~~i~~l~~s~dg~~l~~~s-dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd  856 (1082)
                           ..|.....|+.|+|+|+++|+|+ |..+.+||++..-+.+.+..+.-+|..+.||. +|++||+|++|..|-|-+
T Consensus       186 -----~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~-dg~~lASaSEDh~IDIA~  259 (313)
T KOG1407|consen  186 -----KAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLDWPVRTLSFSH-DGRMLASASEDHFIDIAE  259 (313)
T ss_pred             -----ccCCcceEEEEECCCCceEeeccccceeeccChhHhhhheeeccccCceEEEEecc-CcceeeccCccceEEeEe
Confidence                 11677778899999999999998 67899999999999999999999999999999 999999999999999999


Q ss_pred             cccceeeeeecccccCEEEEEEeCCCCEEEEEeCC
Q 001415          857 VRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGAD  891 (1082)
Q Consensus       857 ~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~D  891 (1082)
                      +++|..+..++ +.++-..++|+|...+||.++.|
T Consensus       260 vetGd~~~eI~-~~~~t~tVAWHPk~~LLAyA~dd  293 (313)
T KOG1407|consen  260 VETGDRVWEIP-CEGPTFTVAWHPKRPLLAYACDD  293 (313)
T ss_pred             cccCCeEEEee-ccCCceeEEecCCCceeeEEecC
Confidence            99999888887 78899999999999999998776

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.95  E-value=1.2e-26  Score=237.29  Aligned_cols=284  Identities=20%  Similarity=0.278  Sum_probs=228.6

Q ss_pred             ecCCCCCceEEEEecCCCeEEEEEcCCCcEEEEEccccceeeeeceeeeccCCCCcccccccccCCCCceeEEEEecCCC
Q 001415          354 TLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGS  433 (1082)
Q Consensus       354 ~~~h~~~v~~~~~spdg~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~  433 (1082)
                      .....+.|.+++|||...+=+|+.+ .-.+.||+..+......                   +......|.++.|-.||+
T Consensus        22 ~~ke~~~vssl~fsp~~P~d~aVt~-S~rvqly~~~~~~~~k~-------------------~srFk~~v~s~~fR~DG~   81 (487)
T KOG0310|consen   22 VHKEHNSVSSLCFSPKHPYDFAVTS-SVRVQLYSSVTRSVRKT-------------------FSRFKDVVYSVDFRSDGR   81 (487)
T ss_pred             cccccCcceeEecCCCCCCceEEec-ccEEEEEecchhhhhhh-------------------HHhhccceeEEEeecCCe
Confidence            3446689999999997765455443 56788999877665542                   444567899999999999


Q ss_pred             eEEEEeCCCeEEEEEccCCceeeEEEEeeccccCeeEEEecCCCCceEEEEEeCCCcEEEEEccCCceeEEeecCCcCeE
Q 001415          434 LFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVY  513 (1082)
Q Consensus       434 ~las~~~d~~v~iwd~~~~~~~~~~~~~~~h~~~V~~l~fs~dg~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~  513 (1082)
                      +||+|+..|.|+|+|+++...++   .+.+|+.+|..+.|+|++.. .+++|++|+.+++||+.+......+.+|++.|.
T Consensus        82 LlaaGD~sG~V~vfD~k~r~iLR---~~~ah~apv~~~~f~~~d~t-~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR  157 (487)
T KOG0310|consen   82 LLAAGDESGHVKVFDMKSRVILR---QLYAHQAPVHVTKFSPQDNT-MLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVR  157 (487)
T ss_pred             EEEccCCcCcEEEeccccHHHHH---HHhhccCceeEEEecccCCe-EEEecCCCceEEEEEcCCcEEEEEecCCcceeE
Confidence            99999999999999977755555   68899999999999999887 899999999999999999998779999999999


Q ss_pred             EEeeeecCCceEEEEecCCCcEEEEecCCCCceeeecCCCCceEEEEEccCCCeeeecccccceeEEEecCCCCEEEEEe
Q 001415          514 SVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAG  593 (1082)
Q Consensus       514 ~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~i~~~~~~~~~~~l~~~~  593 (1082)
                      +.+|+|-.+ +.+++|+.||.|++||.+........-.|+.+|..+.+-|.|.                     .+++++
T Consensus       158 ~g~~~~~~~-hivvtGsYDg~vrl~DtR~~~~~v~elnhg~pVe~vl~lpsgs---------------------~iasAg  215 (487)
T KOG0310|consen  158 CGDISPAND-HIVVTGSYDGKVRLWDTRSLTSRVVELNHGCPVESVLALPSGS---------------------LIASAG  215 (487)
T ss_pred             eeccccCCC-eEEEecCCCceEEEEEeccCCceeEEecCCCceeeEEEcCCCC---------------------EEEEcC
Confidence            999987654 7999999999999999998765555555777777777777765                     566665


Q ss_pred             CCCeEEEEECCCcce-EEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEecCCccceeecccccccccccccccC
Q 001415          594 DDFSIKFWDMDSVQL-LTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSK  672 (1082)
Q Consensus       594 ~dg~i~iwd~~~~~~-~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  672 (1082)
                       ...+++||+.+|.. +.....|.  ..|+|+++..++..|++++-|+.+++||..+- +.+                  
T Consensus       216 -Gn~vkVWDl~~G~qll~~~~~H~--KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~-Kvv------------------  273 (487)
T KOG0310|consen  216 -GNSVKVWDLTTGGQLLTSMFNHN--KTVTCLRLASDSTRLLSGSLDRHVKVFDTTNY-KVV------------------  273 (487)
T ss_pred             -CCeEEEEEecCCceehhhhhccc--ceEEEEEeecCCceEeecccccceEEEEccce-EEE------------------
Confidence             45799999986554 44444343  37999999999999999999999999996543 221                  


Q ss_pred             CCCccccCCCCceeeeccCCceeEEEecccCCCCccccccccCcccccceeEEEEccCCceeeecccCCeEEEe
Q 001415          673 NGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLW  746 (1082)
Q Consensus       673 ~~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iw  746 (1082)
                                            .-|.                   -.++|.+++.+|+++.++.|..||.+.+-
T Consensus       274 ----------------------~s~~-------------------~~~pvLsiavs~dd~t~viGmsnGlv~~r  306 (487)
T KOG0310|consen  274 ----------------------HSWK-------------------YPGPVLSIAVSPDDQTVVIGMSNGLVSIR  306 (487)
T ss_pred             ----------------------Eeee-------------------cccceeeEEecCCCceEEEecccceeeee
Confidence                                  1222                   34578889999999999999999887765

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.95  E-value=2.7e-25  Score=232.28  Aligned_cols=501  Identities=17%  Similarity=0.228  Sum_probs=329.0

Q ss_pred             eeEEeecCCcCeEEEeeeecCCceEEEEecCCCcEEEEecCCCCceeeecCCCCceEEEEEccCCCeeeecccccceeEE
Q 001415          501 KQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVV  580 (1082)
Q Consensus       501 ~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~i~~~  580 (1082)
                      .+..+.+|...|+.+.|++-.| .+|++|+.|..|+||.+..+... .+.              ...+..++.+..+.++
T Consensus        71 ~i~~l~~H~d~VtDl~FspF~D-~LLAT~S~D~~VKiW~lp~g~~q-~LS--------------ape~~~g~~~~~vE~l  134 (1012)
T KOG1445|consen   71 DIGILAAHGDQVTDLGFSPFAD-ELLATCSRDEPVKIWKLPRGHSQ-KLS--------------APEIDVGGGNVIVECL  134 (1012)
T ss_pred             ccceeecccceeeccCccccch-hhhhcccCCCeeEEEecCCCccc-ccC--------------CcceeecCCceEEEEe
Confidence            4556788999999999998777 58999999999999988632111 111              0123334445577888


Q ss_pred             EecCCCCEEEEEeCCCeEEEEECCCcceEEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEecCCccceeecccc
Q 001415          581 QFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENL  660 (1082)
Q Consensus       581 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~  660 (1082)
                      .|+|...-++..+..|+++|||+.+++.+..+.+|..  .|.++.|+.||.+|++.+.|..|+|||.+.....++..++|
T Consensus       135 ~fHpTaDgil~s~a~g~v~i~D~stqk~~~el~~h~d--~vQSa~WseDG~llatscKdkqirifDPRa~~~piQ~te~H  212 (1012)
T KOG1445|consen  135 RFHPTADGILASGAHGSVYITDISTQKTAVELSGHTD--KVQSADWSEDGKLLATSCKDKQIRIFDPRASMEPIQTTEGH  212 (1012)
T ss_pred             ecccCcCceEEeccCceEEEEEcccCceeecccCCch--hhhccccccCCceEeeecCCcceEEeCCccCCCcccccccc
Confidence            8888887888888899999999999999999988776  68999999999999999999999999999887888888887


Q ss_pred             cccccccccccCCCCccccCCCCceeeeccC----CceeEEEecccCCCCccccccccCcccccceeEEEEccCCceeee
Q 001415          661 AYDASRTSENSKNGDVRSLADVKPRITEESN----DKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILA  736 (1082)
Q Consensus       661 ~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d----~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~  736 (1082)
                      ....- ..+.|       ..+-..+++.+.+    ..+++||............+.     ....|.--.|.||.+.++.
T Consensus       213 ~~~rd-sRv~w-------~Gn~~rlisTGF~~~R~reV~~~Dtr~f~~p~~tleld-----~stGvLiPl~DpDt~llfL  279 (1012)
T KOG1445|consen  213 GGMRD-SRVLW-------AGNWERLISTGFTTKRIREVRAYDTRKFGAPVHTLELD-----SSTGVLIPLYDPDTRLLFL  279 (1012)
T ss_pred             ccchh-heeee-------ccchhhhhhcccchhhheeeeeeeccccCCcceeEEee-----cccceEeeeecCCCceEEE
Confidence            76522 23444       4444566666554    478999988765443332222     2334444567777765544


Q ss_pred             cc-cCCeEEEeeccccc---------------------------------------------------------------
Q 001415          737 LA-SNAIHLLWKWQRTE---------------------------------------------------------------  752 (1082)
Q Consensus       737 ~~-~d~~i~iw~~~~~~---------------------------------------------------------------  752 (1082)
                      ++ .+..+..+++...+                                                               
T Consensus       280 aGKG~~~l~~lE~~d~qPyLs~v~~~tle~~~~GA~lvpkral~VM~~EV~rvlQLt~~~ivPi~y~VPRksyrdFH~DL  359 (1012)
T KOG1445|consen  280 AGKGTNKLFMLEMQDRQPYLSHVFELTLEEQTLGATLVPKRALHVMDGEVDRVLQLTKSSIVPIPYIVPRKSYRDFHSDL  359 (1012)
T ss_pred             ecCCcceEEEEEecCCCcchhhhhhhcchhhhccceecchhhhhhcchhhhhheecccCceeecccccchhhhhhhhhhh
Confidence            43 35666666665432                                                               


Q ss_pred             ----------------------------cC--------------C----------------------------CCC--cc
Q 001415          753 ----------------------------RN--------------S----------------------------SGK--AT  760 (1082)
Q Consensus       753 ----------------------------~~--------------~----------------------------~~~--~~  760 (1082)
                                                  ..              |                            .+.  ..
T Consensus       360 fPeT~G~~p~~~ageWlnG~Nq~vqKvSl~Pa~r~h~~~pp~~~P~p~~a~t~sf~~v~~ppaaP~~~~n~~~~~~~~Pd  439 (1012)
T KOG1445|consen  360 FPETRGAEPGCTAGEWLNGTNQVVQKVSLAPAQRSHSPPPPEPVPTPKVAQTPSFVPVPTPPAAPRPMSNNNSSSNNVPD  439 (1012)
T ss_pred             CccccCCccCcCccceecCccccccccccCchhccCCCCCCCCCCCcccccCCCCccccCCCCCCCccccccccccCCCc
Confidence                                        00              0                            000  00


Q ss_pred             cccCccc-------------cCCCCc---------------------------------ceee----------c----cc
Q 001415          761 ASVAPQL-------------WQPPSG---------------------------------IMMT----------N----DV  780 (1082)
Q Consensus       761 ~~~~~~~-------------~~~~~~---------------------------------~~~~----------~----~~  780 (1082)
                      ......+             ++...|                                 ..+.          .    ..
T Consensus       440 ~~~qpaV~~~~e~r~l~~~~~E~~~g~~~~~~dad~~~g~sS~~s~~~~~~~~~~kP~S~plt~~~s~~s~~~P~~~ksv  519 (1012)
T KOG1445|consen  440 VQEQPAVPKKEEVRELDYRPYEKENGVHTPNADADSTQGNSSPISTISPEPVTIVKPASTPLTDSVSTPSVVGPAFGKSV  519 (1012)
T ss_pred             cccCCCcCcchhhhhhcccccccccCccCCCcccccccCCCCCccccCCCcccccCCCCcccccccccccccCccccccC
Confidence            0000000             000000                                 0000          0    00


Q ss_pred             C----------------------------------------C-CCCCCC-c------------cEEEeecCCCeEEE---
Q 001415          781 T----------------------------------------D-SNPEEA-V------------PCFALSKNDSYVMS---  803 (1082)
Q Consensus       781 ~----------------------------------------~-~~~~~~-i------------~~l~~s~dg~~l~~---  803 (1082)
                      .                                        + .+|... |            .+=-|..+.+.+|+   
T Consensus       520 Pe~~~~~~g~~~sat~~v~~s~s~r~~s~v~G~iSKFRH~~Gt~ghks~hi~NLrnln~~~PgEsnGfcan~~rvAVPL~  599 (1012)
T KOG1445|consen  520 PEQPPVNFGKPISATNRVPLSQSVRPKSCVVGQISKFRHVDGTQGHKSAHISNLRNLNTRLPGESNGFCANNKRVAVPLA  599 (1012)
T ss_pred             CCCCCcccCCCccccccccccccccccceeeccchheeeccCccccchhhhhhhhcccccCCCccCceeeccceEEEEec
Confidence            0                                        0 000000 0            00012223344443   


Q ss_pred             eeCCeEEEEecCCC-eeEE-EECC--CCCCeeEEEEecCCCcEEEEEeCCCcEEEEecccc-------eeeeeecccccC
Q 001415          804 ASGGKISLFNMMTF-KTMA-TFMP--PPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVD-------EVKSKLKGHSKR  872 (1082)
Q Consensus       804 ~sdg~i~iwd~~~~-~~~~-~~~~--~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~-------~~~~~l~~h~~~  872 (1082)
                      |+.|.|.||++... +..- .+.+  ....|+.+.|.|-|...||++++||.|++|.+..+       ..-..+.+|...
T Consensus       600 g~gG~iai~el~~PGrLPDgv~p~l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eK  679 (1012)
T KOG1445|consen  600 GSGGVIAIYELNEPGRLPDGVMPGLFNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEK  679 (1012)
T ss_pred             CCCceEEEEEcCCCCCCCcccccccccCceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccce
Confidence            34688999998742 2211 1111  23469999999999999999999999999999764       344678899999


Q ss_pred             EEEEEEeCC-CCEEEEEeCCCcEEEEEcCCcccccceeeeccCCCCCCCCCCcEEEEcCCCcEEEE-EecCeEEEEEccC
Q 001415          873 ITGLAFSHA-LNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFETTK  950 (1082)
Q Consensus       873 V~~l~~s~d-~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~-~~d~~i~iwd~~~  950 (1082)
                      |+++.|+|- ...|++++.|.+|++||+.+..     ....+.+|.   ..|..++|||||+.+|+ +.||.|++|..++
T Consensus       680 I~slRfHPLAadvLa~asyd~Ti~lWDl~~~~-----~~~~l~gHt---dqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs  751 (1012)
T KOG1445|consen  680 ITSLRFHPLAADVLAVASYDSTIELWDLANAK-----LYSRLVGHT---DQIFGIAWSPDGRRIATVCKDGTLRVYEPRS  751 (1012)
T ss_pred             EEEEEecchhhhHhhhhhccceeeeeehhhhh-----hhheeccCc---CceeEEEECCCCcceeeeecCceEEEeCCCC
Confidence            999999985 4689999999999999999854     344566777   68999999999999999 8999999999887


Q ss_pred             cceeeeeccCCCCcceeEEEEcCCCceEEEeecCC----cEEEEecCCcee--eeeeCCCeecCCCCCCCCceeeEEEEe
Q 001415          951 LECVKQWVPRESSAPITHATFSCDSQLVYACFLDA----TVCVFSAANLKL--RCRINPSAYLPAGVSSSNVHPLVIAAH 1024 (1082)
Q Consensus       951 ~~~~~~~~~~~h~~~i~~l~~s~dg~~l~t~s~dg----~v~vwd~~~~~~--~~~~~~~~~~~~gh~~~~v~~~~~~~~ 1024 (1082)
                      ++....-....-..+-..|.|.-||+++++.+.|.    .|.+||..+...  +....    +  .   ....++.-.|.
T Consensus       752 ~e~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l~~~pl~t~~----l--D---vaps~LvP~YD  822 (1012)
T KOG1445|consen  752 REQPVYEGKGPVGTRGARILWACDGRIVIVVGFDKSSERQVQMYDAQTLDLRPLYTQV----L--D---VAPSPLVPHYD  822 (1012)
T ss_pred             CCCccccCCCCccCcceeEEEEecCcEEEEecccccchhhhhhhhhhhccCCcceeee----e--c---ccCcccccccc
Confidence            65432211101123334567888999998887664    588998876442  22111    0  0   00112233455


Q ss_pred             CCCCCeEEEEecCCcEEEEccCCCC
Q 001415         1025 PQEPNEFALGLSDGGVHVFEPLESE 1049 (1082)
Q Consensus      1025 ~~d~~~l~s~~~dg~v~vW~~~~~~ 1049 (1082)
                      ++.+-++++|-.|..|.+|++.-.+
T Consensus       823 ~Ds~~lfltGKGD~~v~~yEv~~es  847 (1012)
T KOG1445|consen  823 YDSNVLFLTGKGDRFVNMYEVIYES  847 (1012)
T ss_pred             CCCceEEEecCCCceEEEEEecCCC
Confidence            5556678899999999999987665

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.95  E-value=1e-26  Score=261.17  Aligned_cols=304  Identities=17%  Similarity=0.242  Sum_probs=241.5

Q ss_pred             cccceeEEEEccCCceeeecc--cCCeEEEeeccccccCCCCCcccccCccccCCCCcceeecccCCCCCCCCccEEEee
Q 001415          718 RATKISRLIFTNSGNAILALA--SNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALS  795 (1082)
Q Consensus       718 ~~~~i~~~~~s~~~~~l~~~~--~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s  795 (1082)
                      +...|.++..+|+|..+++++  .|+.+++|+.+.-...          ...++..-.+   .......|.+.|.|+.|+
T Consensus        12 ~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~----------~~~~~~~l~k---~l~~m~~h~~sv~CVR~S   78 (942)
T KOG0973|consen   12 NEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDE----------KEEKNENLPK---HLCTMDDHDGSVNCVRFS   78 (942)
T ss_pred             CCeeEEEEEecCCceeEecCCccccccceeeccccccch----------hhhhhcccch---hheeeccccCceeEEEEC
Confidence            455689999999999999999  8999999987532110          0111221011   111122489999999999


Q ss_pred             cCCCeEEEeeC-CeEEEEecCC------------------CeeEEEECCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEe
Q 001415          796 KNDSYVMSASG-GKISLFNMMT------------------FKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYN  856 (1082)
Q Consensus       796 ~dg~~l~~~sd-g~i~iwd~~~------------------~~~~~~~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd  856 (1082)
                      |||++||+|+| ..|.||....                  .+++..+.+|...|..++|+| ++.+||+++.|++|.||+
T Consensus        79 ~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp-~~~~lvS~s~DnsViiwn  157 (942)
T KOG0973|consen   79 PDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSP-DDSLLVSVSLDNSVIIWN  157 (942)
T ss_pred             CCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCC-CccEEEEecccceEEEEc
Confidence            99999999996 6689998762                  246778999999999999999 999999999999999999


Q ss_pred             cccceeeeeecccccCEEEEEEeCCCCEEEEEeCCCcEEEEEcCCcccccceeeeccCCCCCCCCCCcEEEEcCCCcEEE
Q 001415          857 VRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFL  936 (1082)
Q Consensus       857 ~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~  936 (1082)
                      ..+.+++.++++|.+.|-.+.|.|-|+||||-+.|++|+||++.+...  .+.+..+..+.+.......+.|||||++|+
T Consensus       158 ~~tF~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i--~k~It~pf~~~~~~T~f~RlSWSPDG~~la  235 (942)
T KOG0973|consen  158 AKTFELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGI--EKSITKPFEESPLTTFFLRLSWSPDGHHLA  235 (942)
T ss_pred             cccceeeeeeecccccccceEECCccCeeeeecCCceEEEEEccccee--eEeeccchhhCCCcceeeecccCCCcCeec
Confidence            999999999999999999999999999999999999999999777443  233444444444445678999999999999


Q ss_pred             E--Eec---CeEEEEEccCcceeeeeccCCCCcceeEEEEcCC--------C-----c----eEEEeecCCcEEEEecCC
Q 001415          937 V--VHE---TQLAIFETTKLECVKQWVPRESSAPITHATFSCD--------S-----Q----LVYACFLDATVCVFSAAN  994 (1082)
Q Consensus       937 ~--~~d---~~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~d--------g-----~----~l~t~s~dg~v~vwd~~~  994 (1082)
                      +  +..   ..+.|.+-.+.+.-..+.  ||..++.+++|+|.        |     .    .+|+|+.|++|.||....
T Consensus       236 s~nA~n~~~~~~~IieR~tWk~~~~Lv--GH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~  313 (942)
T KOG0973|consen  236 SPNAVNGGKSTIAIIERGTWKVDKDLV--GHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTAL  313 (942)
T ss_pred             chhhccCCcceeEEEecCCceeeeeee--cCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCC
Confidence            9  333   357888776666666665  89999999999981        1     1    588999999999999988


Q ss_pred             ceeeeeeCCCeecCCCCCCCCceeeEEEEeCCCCCeEEEEecCCcEEEEccCCCC
Q 001415          995 LKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESE 1049 (1082)
Q Consensus       995 ~~~~~~~~~~~~~~~gh~~~~v~~~~~~~~~~d~~~l~s~~~dg~v~vW~~~~~~ 1049 (1082)
                      .+.+..+.       .-..  ..++.++|+| ||..|.+++.||+|.+..++..|
T Consensus       314 ~RPl~vi~-------~lf~--~SI~DmsWsp-dG~~LfacS~DGtV~~i~Fee~E  358 (942)
T KOG0973|consen  314 PRPLFVIH-------NLFN--KSIVDMSWSP-DGFSLFACSLDGTVALIHFEEKE  358 (942)
T ss_pred             CCchhhhh-------hhhc--CceeeeeEcC-CCCeEEEEecCCeEEEEEcchHH
Confidence            88776544       1112  3456999999 69999999999999999998877

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=99.95  E-value=3.9e-26  Score=214.12  Aligned_cols=278  Identities=17%  Similarity=0.263  Sum_probs=232.3

Q ss_pred             eecCCCCCceEEEEecCCCeEEEEEcCCCcEEEEEccccceeeeeceeeeccCCCCcccccccccCCCCceeEEEEec-C
Q 001415          353 RTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP-D  431 (1082)
Q Consensus       353 ~~~~h~~~v~~~~~spdg~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~sp-d  431 (1082)
                      .+.+|...|.+++|+-+|.+ ||+|+.|+++.+|+++..+.+...                 ...+|.+.|-.++|+| .
T Consensus        15 ~~~~~~~~v~Sv~wn~~g~~-lasgs~dktv~v~n~e~~r~~~~~-----------------~~~gh~~svdql~w~~~~   76 (313)
T KOG1407|consen   15 ELQGHVQKVHSVAWNCDGTK-LASGSFDKTVSVWNLERDRFRKEL-----------------VYRGHTDSVDQLCWDPKH   76 (313)
T ss_pred             HhhhhhhcceEEEEcccCce-eeecccCCceEEEEecchhhhhhh-----------------cccCCCcchhhheeCCCC
Confidence            45568999999999999997 999999999999999887544321                 3789999999999999 6


Q ss_pred             CCeEEEEeCCCeEEEEEccCCceeeEEEEeeccccCeeEEEecCCCCceEEEEEeCCCcEEEEEccCCceeEEeecCCcC
Q 001415          432 GSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAP  511 (1082)
Q Consensus       432 g~~las~~~d~~v~iwd~~~~~~~~~~~~~~~h~~~V~~l~fs~dg~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~  511 (1082)
                      ...+|+++.|.+|++||+..+++...   ... .+.=..+.|+|+|.  +++.++.|..|.+.|.++.+.+...+ ..-.
T Consensus        77 ~d~~atas~dk~ir~wd~r~~k~~~~---i~~-~~eni~i~wsp~g~--~~~~~~kdD~it~id~r~~~~~~~~~-~~~e  149 (313)
T KOG1407|consen   77 PDLFATASGDKTIRIWDIRSGKCTAR---IET-KGENINITWSPDGE--YIAVGNKDDRITFIDARTYKIVNEEQ-FKFE  149 (313)
T ss_pred             CcceEEecCCceEEEEEeccCcEEEE---eec-cCcceEEEEcCCCC--EEEEecCcccEEEEEecccceeehhc-ccce
Confidence            77999999999999999999998763   322 33445689999999  79999999999999999888776655 4456


Q ss_pred             eEEEeeeecCCceEEEEecCCCcEEEEecCCCCceeeecCCCCceEEEEEccCCCeeeecccccceeEEEecCCCCEEEE
Q 001415          512 VYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLA  591 (1082)
Q Consensus       512 v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~i~~~~~~~~~~~l~~  591 (1082)
                      +.-++|+.++  .+++.....|.|.|-.....+++..+..|...+.++.|+|+|+                     +|++
T Consensus       150 ~ne~~w~~~n--d~Fflt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~Gr---------------------yfA~  206 (313)
T KOG1407|consen  150 VNEISWNNSN--DLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGR---------------------YFAT  206 (313)
T ss_pred             eeeeeecCCC--CEEEEecCCceEEEEeccccccccccccCCcceEEEEECCCCc---------------------eEee
Confidence            7778887444  5677777789999999999899999999998888888888777                     8999


Q ss_pred             EeCCCeEEEEECCCcceEEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEecCCccceeeccccccccccccccc
Q 001415          592 AGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENS  671 (1082)
Q Consensus       592 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  671 (1082)
                      |+.|..+.+||+..--+++.+....-  +|+.+.|+-||++||+++.|..|-|=++.+|.                    
T Consensus       207 GsADAlvSLWD~~ELiC~R~isRldw--pVRTlSFS~dg~~lASaSEDh~IDIA~vetGd--------------------  264 (313)
T KOG1407|consen  207 GSADALVSLWDVDELICERCISRLDW--PVRTLSFSHDGRMLASASEDHFIDIAEVETGD--------------------  264 (313)
T ss_pred             ccccceeeccChhHhhhheeeccccC--ceEEEEeccCcceeeccCccceEEeEecccCC--------------------
Confidence            99999999999999888888876544  79999999999999999999999888887773                    


Q ss_pred             CCCCccccCCCCceeeeccCCceeEEEecccCCCCccccccccCcccccceeEEEEccCCceeeecccC
Q 001415          672 KNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASN  740 (1082)
Q Consensus       672 ~~~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d  740 (1082)
                                             ++|++.                 +.++...++|+|....|+.++.|
T Consensus       265 -----------------------~~~eI~-----------------~~~~t~tVAWHPk~~LLAyA~dd  293 (313)
T KOG1407|consen  265 -----------------------RVWEIP-----------------CEGPTFTVAWHPKRPLLAYACDD  293 (313)
T ss_pred             -----------------------eEEEee-----------------ccCCceeEEecCCCceeeEEecC
Confidence                                   344443                 56677889999999988887776

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.95  E-value=1.3e-26  Score=253.84  Aligned_cols=276  Identities=14%  Similarity=0.217  Sum_probs=214.0

Q ss_pred             cccceeEEEEccCCceeeecccCCeEEEeecccccc---------------CCCC--------------Cccc------c
Q 001415          718 RATKISRLIFTNSGNAILALASNAIHLLWKWQRTER---------------NSSG--------------KATA------S  762 (1082)
Q Consensus       718 ~~~~i~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~---------------~~~~--------------~~~~------~  762 (1082)
                      |.+.|.++.|++||++||++|.|+.|+||.+.....               ...+              ....      .
T Consensus       266 h~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~s  345 (712)
T KOG0283|consen  266 HKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQS  345 (712)
T ss_pred             cCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccCC
Confidence            899999999999999999999999999999876210               0000              0000      0


Q ss_pred             cCccccCCCCcc-eeecccCCCCCCCCccEEEeecCCCeEEEeeCCeEEEEecCCCeeEEEECCCCCCeeEEEEecCCCc
Q 001415          763 VAPQLWQPPSGI-MMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNN  841 (1082)
Q Consensus       763 ~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~l~~s~dg~~l~~~sdg~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~  841 (1082)
                      .. .+.+..... .........+|...|..+.||.++-+|-+.-|.+|++|++....++..|. |...|||++|+|.|.+
T Consensus       346 ~~-~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~fLLSSSMDKTVRLWh~~~~~CL~~F~-HndfVTcVaFnPvDDr  423 (712)
T KOG0283|consen  346 PC-VLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNNFLLSSSMDKTVRLWHPGRKECLKVFS-HNDFVTCVAFNPVDDR  423 (712)
T ss_pred             cc-ccCCCccccccccchhhhhccchhheecccccCCeeEeccccccEEeecCCCcceeeEEe-cCCeeEEEEecccCCC
Confidence            00 011111111 11111122359999999999998855555559999999999999999998 9999999999999999


Q ss_pred             EEEEEeCCCcEEEEecccceeeeeecccccCEEEEEEeCCCCEEEEEeCCCcEEEEEcCCcccccceeeeccCCCCCCCC
Q 001415          842 IIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQ  921 (1082)
Q Consensus       842 ~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~  921 (1082)
                      ++++|+-||.||||++...+.+.-...+ .-|++++|+|||++.+.|+-+|.+++|+....+.....-+....+......
T Consensus       424 yFiSGSLD~KvRiWsI~d~~Vv~W~Dl~-~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~  502 (712)
T KOG0283|consen  424 YFISGSLDGKVRLWSISDKKVVDWNDLR-DLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGK  502 (712)
T ss_pred             cEeecccccceEEeecCcCeeEeehhhh-hhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCccccCc
Confidence            9999999999999999987765544444 789999999999999999999999999999877666555555554444445


Q ss_pred             CCcEEEEcCCC--cEEEEEecCeEEEEEccCcceeeeeccCCCCcceeEEEEcCCCceEEEeecCCcEEEEecCCce
Q 001415          922 SDTRVQFHQDQ--IHFLVVHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLK  996 (1082)
Q Consensus       922 ~v~~~~fspdg--~~l~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~dg~~l~t~s~dg~v~vwd~~~~~  996 (1082)
                      .|+.+.|.|..  +.|+++.|..|+|||..+...+..|........-....|+.||++|+++++|..|+||+.....
T Consensus       503 rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~~~~~  579 (712)
T KOG0283|consen  503 RITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVYIWKNDSFN  579 (712)
T ss_pred             eeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeecCceEEEEeCCCCc
Confidence            79999999754  4888899999999999888888888743334445667899999999999999999999985444

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.95  E-value=2.2e-26  Score=235.55  Aligned_cols=297  Identities=20%  Similarity=0.286  Sum_probs=219.0

Q ss_pred             ccCCCCceeEEEEecCCCeEEEEeCCCeEEEEEccCCceeeE-EEEee-ccccCeeEEEecCCCCceEEEEEeCCCcEEE
Q 001415          416 VKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQ-HLEID-AHVGGVNDIAFSHPNKQLCVITCGDDKTIKV  493 (1082)
Q Consensus       416 ~~~h~~~V~~l~~spdg~~las~~~d~~v~iwd~~~~~~~~~-~~~~~-~h~~~V~~l~fs~dg~~~~l~s~s~d~~i~v  493 (1082)
                      +.+|+..|+++++.|.|..|++|+.|.+|++||+.....-.+ ...+. .....|.++.||+.|.++++++|  ....+|
T Consensus       163 l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg--~aqakl  240 (641)
T KOG0772|consen  163 LKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSG--SAQAKL  240 (641)
T ss_pred             ccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEec--CcceeE
Confidence            789999999999999999999999999999999986532111 11121 23457999999999996444444  567899


Q ss_pred             EEccCCceeEE-------------eecCCcCeEEEeeeecCCceEEEEecCCCcEEEEecCCCCceeee-cCCCCceEEE
Q 001415          494 WDATNGAKQYI-------------FEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDY-EAPGRWCTTM  559 (1082)
Q Consensus       494 wd~~~~~~~~~-------------~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-~~~~~~v~~~  559 (1082)
                      +| +.|..+..             -+||...+++.+|+|... ..+++++.||++|+||+......... .....     
T Consensus       241 ~D-RdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k-~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~-----  313 (641)
T KOG0772|consen  241 LD-RDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNK-EEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPA-----  313 (641)
T ss_pred             Ec-cCCceeeeeeccchhhhhhhccCCceeeeeccccccCcc-cceEEecCCCcEEEEecCCchhheeEEeeccC-----
Confidence            99 55544433             248999999999999776 57999999999999999875543321 11100     


Q ss_pred             EEccCCCeeeecccccceeEEEecCCCCEEEEEeCCCeEEEEECCCcce---EEEEecCCCCCCcCeEEEcCCCCEEEEE
Q 001415          560 AYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQL---LTSIDADGGLPASPRIRFNKDGCLLAVS  636 (1082)
Q Consensus       560 ~~s~d~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~---~~~~~~~~~~~~i~~~~~s~dg~~l~~~  636 (1082)
                                 +...-.+..++|+++++.+++|+.||.|.+|+......   ...-..|.....|++++||+||++|++-
T Consensus       314 -----------~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSR  382 (641)
T KOG0772|consen  314 -----------GGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSR  382 (641)
T ss_pred             -----------CCcccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhc
Confidence                       01112455667777777999999999999999754321   2233455555589999999999999999


Q ss_pred             ECCCcEEEEEecCCccceeecccccccccccccccCCCCccccCCCCceeeeccCCceeEEEecccCCCCccccccccCc
Q 001415          637 TNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPEN  716 (1082)
Q Consensus       637 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~  716 (1082)
                      +.|+++++||++..++++....+..                                                       
T Consensus       383 g~D~tLKvWDLrq~kkpL~~~tgL~-------------------------------------------------------  407 (641)
T KOG0772|consen  383 GFDDTLKVWDLRQFKKPLNVRTGLP-------------------------------------------------------  407 (641)
T ss_pred             cCCCceeeeeccccccchhhhcCCC-------------------------------------------------------
Confidence            9999999999987644433222110                                                       


Q ss_pred             ccccceeEEEEccCCceeeecccCCeEEEeeccccccCCCCCcccccCccccCCCCcceeecccCCCCCCCCccEEEeec
Q 001415          717 LRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSK  796 (1082)
Q Consensus       717 ~~~~~i~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~  796 (1082)
                                                                                          ....-+.++|||
T Consensus       408 --------------------------------------------------------------------t~~~~tdc~FSP  419 (641)
T KOG0772|consen  408 --------------------------------------------------------------------TPFPGTDCCFSP  419 (641)
T ss_pred             --------------------------------------------------------------------ccCCCCccccCC
Confidence                                                                                122234566777


Q ss_pred             CCCeEEEee-------CCeEEEEecCCCeeEEEECCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEe
Q 001415          797 NDSYVMSAS-------GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYN  856 (1082)
Q Consensus       797 dg~~l~~~s-------dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd  856 (1082)
                      +.++|++|.       .|.+.+||..+...+..+.-....|..+.|+| .-+.|.+|+.||.+++|-
T Consensus       420 d~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~aSvv~~~Whp-kLNQi~~gsgdG~~~vyY  485 (641)
T KOG0772|consen  420 DDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDISTASVVRCLWHP-KLNQIFAGSGDGTAHVYY  485 (641)
T ss_pred             CceEEEecccccCCCCCceEEEEeccceeeEEEecCCCceEEEEeecc-hhhheeeecCCCceEEEE
Confidence            777777764       25799999999999999988888999999999 777888899999999874

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.95  E-value=7.6e-27  Score=245.84  Aligned_cols=253  Identities=19%  Similarity=0.262  Sum_probs=209.0

Q ss_pred             CCCCce---EEEEecCCCeEEEEEcCCCcEEEEEccccceeeeeceeeeccCCCCcccccccccCCCCceeEEEEecCCC
Q 001415          357 QGSSPM---SMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGS  433 (1082)
Q Consensus       357 h~~~v~---~~~~spdg~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~  433 (1082)
                      |...|.   ++..++.+.++|++|+.||.|++|++..-....            +.+... .+..|.+.|+.++...+|+
T Consensus        20 n~~~v~~~~~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~------------s~~~~a-sme~HsDWVNDiiL~~~~~   86 (735)
T KOG0308|consen   20 NRNGVNITKALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEP------------STPYIA-SMEHHSDWVNDIILCGNGK   86 (735)
T ss_pred             ccccccchhhccccCCCCceEEecCCCceEEEeccccccCCc------------ccchhh-hhhhhHhHHhhHHhhcCCC
Confidence            455555   555665555469999999999999986543221            111111 3778999999999999999


Q ss_pred             eEEEEeCCCeEEEEEccCCceeeEEEEeeccccCeeEEEe-cCCCCceEEEEEeCCCcEEEEEccCCc--eeEE------
Q 001415          434 LFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAF-SHPNKQLCVITCGDDKTIKVWDATNGA--KQYI------  504 (1082)
Q Consensus       434 ~las~~~d~~v~iwd~~~~~~~~~~~~~~~h~~~V~~l~f-s~dg~~~~l~s~s~d~~i~vwd~~~~~--~~~~------  504 (1082)
                      .|++++.|-+|++|+...+. .....++..|.+.|.|++. .++..  ++||||-|+.|.+||+.+|.  .+.+      
T Consensus        87 tlIS~SsDtTVK~W~~~~~~-~~c~stir~H~DYVkcla~~ak~~~--lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~  163 (735)
T KOG0308|consen   87 TLISASSDTTVKVWNAHKDN-TFCMSTIRTHKDYVKCLAYIAKNNE--LVASGGLDRKIFLWDINTGTATLVASFNNVTV  163 (735)
T ss_pred             ceEEecCCceEEEeecccCc-chhHhhhhcccchheeeeecccCce--eEEecCCCccEEEEEccCcchhhhhhcccccc
Confidence            99999999999999998774 1122378899999999999 66666  89999999999999999873  3322      


Q ss_pred             --ee-cCCcCeEEEeeeecCCceEEEEecCCCcEEEEecCCCCceeeecCCCCceEEEEEccCCCeeeecccccceeEEE
Q 001415          505 --FE-GHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQ  581 (1082)
Q Consensus       505 --~~-~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~i~~~~  581 (1082)
                        +. |+...|++++..+  .|..+++|+..+.+++||.++......+.+|...|..+..+.||+               
T Consensus       164 ~sl~sG~k~siYSLA~N~--t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt---------------  226 (735)
T KOG0308|consen  164 NSLGSGPKDSIYSLAMNQ--TGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGT---------------  226 (735)
T ss_pred             ccCCCCCccceeeeecCC--cceEEEecCcccceEEeccccccceeeeeccccceEEEEEcCCCC---------------
Confidence              23 7888999998654  447899999999999999999999999999999888888888877               


Q ss_pred             ecCCCCEEEEEeCCCeEEEEECCCcceEEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEecCC
Q 001415          582 FDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG  650 (1082)
Q Consensus       582 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~iwd~~~~  650 (1082)
                            ++++++.||+|++||+...+++.++..|..  .+.++..+|+=..+++|+.||.|..=|+++.
T Consensus       227 ------~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e--~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~  287 (735)
T KOG0308|consen  227 ------RLLSASSDGTIRLWDLGQQRCLATYIVHKE--GVWALQSSPSFTHVYSGGRDGNIYRTDLRNP  287 (735)
T ss_pred             ------eEeecCCCceEEeeeccccceeeeEEeccC--ceEEEeeCCCcceEEecCCCCcEEecccCCc
Confidence                  799999999999999999999999988876  5899999999999999999999998888765

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=99.95  E-value=1.4e-26  Score=221.90  Aligned_cols=303  Identities=15%  Similarity=0.247  Sum_probs=231.7

Q ss_pred             CCCcCeEEEcCCCCEEEEEECCCcEEEEEecCCccceeecccccccccccccccCCCCccccCCCCceeeeccCCceeEE
Q 001415          618 LPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKNGDVRSLADVKPRITEESNDKSKVW  697 (1082)
Q Consensus       618 ~~~i~~~~~s~dg~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~iw  697 (1082)
                      ..++.+.+|++||.++++|+.|.+|+|.|+.....  + - .+..                      +..+..+..    
T Consensus       112 K~~cR~aafs~DG~lvATGsaD~SIKildvermla--k-s-~~~e----------------------m~~~~~qa~----  161 (430)
T KOG0640|consen  112 KSPCRAAAFSPDGSLVATGSADASIKILDVERMLA--K-S-KPKE----------------------MISGDTQAR----  161 (430)
T ss_pred             ccceeeeeeCCCCcEEEccCCcceEEEeehhhhhh--h-c-chhh----------------------hccCCcccC----
Confidence            34788999999999999999999999999863211  0 0 0000                      001110000    


Q ss_pred             EecccCCCCccccccccCcccccceeEEEEccCCceeeecccCCeEEEeeccccccCCCCCcccccCccccCCCCcceee
Q 001415          698 KLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMT  777 (1082)
Q Consensus       698 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  777 (1082)
                             ...++.  +-.  |...|..+.|+|....|++++.|+++++||+.......        ..++          
T Consensus       162 -------hPvIRT--lYD--H~devn~l~FHPre~ILiS~srD~tvKlFDfsK~saKr--------A~K~----------  212 (430)
T KOG0640|consen  162 -------HPVIRT--LYD--HVDEVNDLDFHPRETILISGSRDNTVKLFDFSKTSAKR--------AFKV----------  212 (430)
T ss_pred             -------CceEee--hhh--ccCcccceeecchhheEEeccCCCeEEEEecccHHHHH--------HHHH----------
Confidence                   000111  111  88999999999999999999999999999986432110        0011          


Q ss_pred             cccCCCCCCCCccEEEeecCCCeEEEeeC-CeEEEEecCCCeeEEEE---CCCCCCeeEEEEecCCCcEEEEEeCCCcEE
Q 001415          778 NDVTDSNPEEAVPCFALSKNDSYVMSASG-GKISLFNMMTFKTMATF---MPPPPAATFLAFHPQDNNIIAIGMDDSSIQ  853 (1082)
Q Consensus       778 ~~~~~~~~~~~i~~l~~s~dg~~l~~~sd-g~i~iwd~~~~~~~~~~---~~~~~~v~~l~~sp~~~~~lasg~~dg~v~  853 (1082)
                        +   ....+|.++.|+|.|.+|++|.| ..+++||+.+.++...-   ..|.+.|+++.+++ .+++.++|+.||.|+
T Consensus       213 --~---qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~-t~~lYvTaSkDG~Ik  286 (430)
T KOG0640|consen  213 --F---QDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAITQVRYSS-TGSLYVTASKDGAIK  286 (430)
T ss_pred             --h---hccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCcccccccceeEEEecC-CccEEEEeccCCcEE
Confidence              1   14678999999999999999997 78999999998887654   35778899999999 999999999999999


Q ss_pred             EEecccceeeeeec-ccc-cCEEEEEEeCCCCEEEEEeCCCcEEEEEcCCcccccceeeeccCCCCCCC--CCCcEEEEc
Q 001415          854 IYNVRVDEVKSKLK-GHS-KRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTA--QSDTRVQFH  929 (1082)
Q Consensus       854 iwd~~~~~~~~~l~-~h~-~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~--~~v~~~~fs  929 (1082)
                      +||--+++|+.++. +|. ..|.+..|..+|+++++.+.|..+++|.+.++..     +....|...+.  .--+...|.
T Consensus       287 lwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~-----l~~YtGAg~tgrq~~rtqAvFN  361 (430)
T KOG0640|consen  287 LWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRM-----LKEYTGAGTTGRQKHRTQAVFN  361 (430)
T ss_pred             eeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCce-----EEEEecCCcccchhhhhhhhhc
Confidence            99999999998885 564 4799999999999999999999999999999654     33333221100  122556677


Q ss_pred             CCCcEEEEE--ecCeEEEEEccCcceeeeeccCCCCcceeEEEEcCCCceEEEeecCCcEEEEe
Q 001415          930 QDQIHFLVV--HETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFS  991 (1082)
Q Consensus       930 pdg~~l~~~--~d~~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~dg~~l~t~s~dg~v~vwd  991 (1082)
                      ....+++.-  ..+.++-||.+++..+..+.. +|.+.+..+.-||.+.-+++++.|-.+++|-
T Consensus       362 htEdyVl~pDEas~slcsWdaRtadr~~l~sl-gHn~a~R~i~HSP~~p~FmTcsdD~raRFWy  424 (430)
T KOG0640|consen  362 HTEDYVLFPDEASNSLCSWDARTADRVALLSL-GHNGAVRWIVHSPVEPAFMTCSDDFRARFWY  424 (430)
T ss_pred             CccceEEccccccCceeeccccchhhhhhccc-CCCCCceEEEeCCCCCceeeecccceeeeee
Confidence            777777773  346899999999988887775 8999999999999999999999999999995

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.95  E-value=1.7e-26  Score=215.55  Aligned_cols=287  Identities=18%  Similarity=0.271  Sum_probs=225.2

Q ss_pred             eEEEEecC--CCeEEEEEcC-----CCcEEEEEccccceeeeeceeeeccCCCCcccccccccCCCCceeEEEEecC-CC
Q 001415          362 MSMDFHPV--QQTLLLVGTN-----VGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPD-GS  433 (1082)
Q Consensus       362 ~~~~~spd--g~~llasgs~-----dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spd-g~  433 (1082)
                      .++.|||-  ++..+|++..     .|++.|-++..++.+..  ++.+|               -.+.+..++||+. ..
T Consensus        12 ysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e--~~s~d---------------~~D~LfdV~Wse~~e~   74 (311)
T KOG0277|consen   12 YSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQE--CQSYD---------------TEDGLFDVAWSENHEN   74 (311)
T ss_pred             ceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEE--EEeee---------------cccceeEeeecCCCcc
Confidence            67889994  4422333322     58899999975554432  22222               3558999999994 56


Q ss_pred             eEEEEeCCCeEEEEEccCCceeeEEEEeeccccCeeEEEecCCCCceEEEEEeCCCcEEEEEccCCceeEEeecCCcCeE
Q 001415          434 LFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVY  513 (1082)
Q Consensus       434 ~las~~~d~~v~iwd~~~~~~~~~~~~~~~h~~~V~~l~fs~dg~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~  513 (1082)
                      .+++++.||+++|||+.-.  -.++..++.|...|.++.|++-.++ .++++|.|++|++|+...++.++++.||...|.
T Consensus        75 ~~~~a~GDGSLrl~d~~~~--s~Pi~~~kEH~~EV~Svdwn~~~r~-~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy  151 (311)
T KOG0277|consen   75 QVIAASGDGSLRLFDLTMP--SKPIHKFKEHKREVYSVDWNTVRRR-IFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIY  151 (311)
T ss_pred             eEEEEecCceEEEeccCCC--CcchhHHHhhhhheEEeccccccce-eEEeeccCCceEeecCCCCcceEeecCCccEEE
Confidence            7888899999999995432  2345578899999999999998776 677779999999999999999999999999999


Q ss_pred             EEeeeecCCceEEEEecCCCcEEEEecCCCCceeeecCCCCceEEEEEccCCCeeeecccccceeEEEecCCCCEEEEEe
Q 001415          514 SVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAG  593 (1082)
Q Consensus       514 ~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~i~~~~~~~~~~~l~~~~  593 (1082)
                      ...|+|... +++++++.|+++++||++.......+..|...+.++.|+.-..                    +.+++|+
T Consensus       152 ~a~~sp~~~-nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~--------------------~vl~Tg~  210 (311)
T KOG0277|consen  152 QAAFSPHIP-NLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNH--------------------NVLATGG  210 (311)
T ss_pred             EEecCCCCC-CeEEEccCCceEEEEEecCCCceeEEEeccceeEeecccccCC--------------------cEEEecC
Confidence            999998754 6999999999999999998877777777777777777765543                    3688999


Q ss_pred             CCCeEEEEECCCcc-eEEEEecCCCCCCcCeEEEcC-CCCEEEEEECCCcEEEEEecCCccceeeccccccccccccccc
Q 001415          594 DDFSIKFWDMDSVQ-LLTSIDADGGLPASPRIRFNK-DGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENS  671 (1082)
Q Consensus       594 ~dg~i~iwd~~~~~-~~~~~~~~~~~~~i~~~~~s~-dg~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  671 (1082)
                      .|+.|++||++.-+ ++..+.+|+  -.|+.+.||| ....|++++.|-+++|||...+...+.....|..-+.  .+.|
T Consensus       211 vd~~vr~wDir~~r~pl~eL~gh~--~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~HtEFv~--g~Dw  286 (311)
T KOG0277|consen  211 VDNLVRGWDIRNLRTPLFELNGHG--LAVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETVDHHTEFVC--GLDW  286 (311)
T ss_pred             CCceEEEEehhhccccceeecCCc--eEEEEEecCcchhhHhhhccccceEEecccccchhhhhhhhccceEEe--cccc
Confidence            99999999998654 466665554  4799999999 4578999999999999999877677777776665544  2333


Q ss_pred             CCCCccccCCCCceeeeccCCceeEEEe
Q 001415          672 KNGDVRSLADVKPRITEESNDKSKVWKL  699 (1082)
Q Consensus       672 ~~~~~~~s~~~~~l~~~~~d~~i~iw~~  699 (1082)
                           . .-++..+++.+.|+.+++|+.
T Consensus       287 -----s-~~~~~~vAs~gWDe~l~Vw~p  308 (311)
T KOG0277|consen  287 -----S-LFDPGQVASTGWDELLYVWNP  308 (311)
T ss_pred             -----c-cccCceeeecccccceeeecc
Confidence                 1 227788999999999999984

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=99.95  E-value=7.3e-25  Score=212.84  Aligned_cols=289  Identities=14%  Similarity=0.163  Sum_probs=228.4

Q ss_pred             cccceeEEEEccCCceeeecccCCeEEEeeccccccCCCCCcccccCccccCCCCcceeecccCCCCCCCCccEEEeecC
Q 001415          718 RATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKN  797 (1082)
Q Consensus       718 ~~~~i~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~d  797 (1082)
                      ....|.++.|+++|..+++++.|..+++||...                      |+......   .+...+..++|...
T Consensus        13 ~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~----------------------g~~~~ti~---skkyG~~~~~Fth~   67 (311)
T KOG1446|consen   13 TNGKINSLDFSDDGLLLITSSEDDSLRLYDSLS----------------------GKQVKTIN---SKKYGVDLACFTHH   67 (311)
T ss_pred             CCCceeEEEecCCCCEEEEecCCCeEEEEEcCC----------------------CceeeEee---cccccccEEEEecC
Confidence            467899999999999999999999999987653                      33222211   14567888889877


Q ss_pred             CCeEEEee---CCeEEEEecCCCeeEEEECCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEecccceeeeeecccccCEE
Q 001415          798 DSYVMSAS---GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRIT  874 (1082)
Q Consensus       798 g~~l~~~s---dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~  874 (1082)
                      ...++.++   |.+|+..++.+.+.++.+.||...|++++.+| .+..+++++.|++|++||++..++...+.....+  
T Consensus        68 ~~~~i~sStk~d~tIryLsl~dNkylRYF~GH~~~V~sL~~sP-~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~p--  144 (311)
T KOG1446|consen   68 SNTVIHSSTKEDDTIRYLSLHDNKYLRYFPGHKKRVNSLSVSP-KDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGRP--  144 (311)
T ss_pred             CceEEEccCCCCCceEEEEeecCceEEEcCCCCceEEEEEecC-CCCeEEecccCCeEEeeEecCCCCceEEecCCCc--
Confidence            77666665   67899999999999999999999999999999 7789999999999999999988888777654444  


Q ss_pred             EEEEeCCCCEEEEEeCCCcEEEEEcCCcccccceeeeccCCCCCCCCCCcEEEEcCCCcEEEEE-ecCeEEEEEccCcce
Q 001415          875 GLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQLAIFETTKLEC  953 (1082)
Q Consensus       875 ~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~-~d~~i~iwd~~~~~~  953 (1082)
                      .+||.|.|-++|++.....|++||++..............+.   ......+.|||||++|+.+ ..+.+++.|.-+|..
T Consensus       145 i~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~---~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~  221 (311)
T KOG1446|consen  145 IAAFDPEGLIFALANGSELIKLYDLRSFDKGPFTTFSITDND---EAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTV  221 (311)
T ss_pred             ceeECCCCcEEEEecCCCeEEEEEecccCCCCceeEccCCCC---ccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcE
Confidence            478999999999998888999999998655443333333222   2567999999999999985 567899999999998


Q ss_pred             eeeeccCCCCc-ceeEEEEcCCCceEEEeecCCcEEEEecCCceeeeeeCCCeecCCCCCCCCceeeEEEEeCCCCCeEE
Q 001415          954 VKQWVPRESSA-PITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFA 1032 (1082)
Q Consensus       954 ~~~~~~~~h~~-~i~~l~~s~dg~~l~t~s~dg~v~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~~~~~~~d~~~l~ 1032 (1082)
                      ...+....... --.+.+|+||++++++|+.||+|.+|++++|+.+.++...    .   .  ....++.|+|   .+..
T Consensus       222 ~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~----~---~--~~~~~~~fnP---~~~m  289 (311)
T KOG1446|consen  222 KSTFSGYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRGP----N---G--GPVSCVRFNP---RYAM  289 (311)
T ss_pred             eeeEeeccCCCCcceeEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEecCC----C---C--CCccccccCC---ceee
Confidence            88877433222 2357899999999999999999999999999999988821    1   1  2233677998   3555


Q ss_pred             EEecCCcEEEEccCCCC
Q 001415         1033 LGLSDGGVHVFEPLESE 1049 (1082)
Q Consensus      1033 s~~~dg~v~vW~~~~~~ 1049 (1082)
                      .++.+..+.+|=+...+
T Consensus       290 f~sa~s~l~fw~p~~~~  306 (311)
T KOG1446|consen  290 FVSASSNLVFWLPDEDA  306 (311)
T ss_pred             eeecCceEEEEeccccc
Confidence            55668899999777554

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=99.95  E-value=7e-26  Score=253.54  Aligned_cols=283  Identities=18%  Similarity=0.306  Sum_probs=241.1

Q ss_pred             CCCCCceEEEEecCCCeEEEEEcCCCcEEEEEccccceeeeeceeeeccCCCCcccccccccCCCCceeEEEEecCCCeE
Q 001415          356 NQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLF  435 (1082)
Q Consensus       356 ~h~~~v~~~~~spdg~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l  435 (1082)
                      .|...+.|..|. ++  .+++|+.|++|++||..++..+..                  .+.||.+.|++++|..-+.+|
T Consensus       206 ~~~~~~~~~q~~-~~--~~~~~s~~~tl~~~~~~~~~~i~~------------------~l~GH~g~V~~l~~~~~~~~l  264 (537)
T KOG0274|consen  206 TDDHVVLCLQLH-DG--FFKSGSDDSTLHLWDLNNGYLILT------------------RLVGHFGGVWGLAFPSGGDKL  264 (537)
T ss_pred             cCcchhhhheee-cC--eEEecCCCceeEEeecccceEEEe------------------eccCCCCCceeEEEecCCCEE
Confidence            368899999999 55  489999999999999999988874                  278999999999998888999


Q ss_pred             EEEeCCCeEEEEEccCCceeeEEEEeeccccCeeEEEecCCCCceEEEEEeCCCcEEEEEccCCceeEEeecCCcCeEEE
Q 001415          436 GVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSV  515 (1082)
Q Consensus       436 as~~~d~~v~iwd~~~~~~~~~~~~~~~h~~~V~~l~fs~dg~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~  515 (1082)
                      ++|+.|.++++||..+|++..   .+.+|...|.++...+.    ++++|+.|.+|++|++.++.++..+.+|.++|.++
T Consensus       265 vsgS~D~t~rvWd~~sg~C~~---~l~gh~stv~~~~~~~~----~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v  337 (537)
T KOG0274|consen  265 VSGSTDKTERVWDCSTGECTH---SLQGHTSSVRCLTIDPF----LLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCV  337 (537)
T ss_pred             EEEecCCcEEeEecCCCcEEE---EecCCCceEEEEEccCc----eEeeccCCceEEEEeccCcceEEEeccccccEEEE
Confidence            999999999999999999887   78899999999987543    68999999999999999999999999999999999


Q ss_pred             eeeecCCceEEEEecCCCcEEEEecCCCCceeeecCCCCceEEEEEccCCCeeeecccccceeEEEecCCCCEEEEEeCC
Q 001415          516 CPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDD  595 (1082)
Q Consensus       516 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d  595 (1082)
                      ..+    +.++++|+.|++|++||+.+.+.+..+.+|...|.++.+... .                     ++++|+.|
T Consensus       338 ~~~----~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~-~---------------------~~~Sgs~D  391 (537)
T KOG0274|consen  338 QLD----EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSE-N---------------------RLLSGSLD  391 (537)
T ss_pred             Eec----CCEEEEEecCceEEEEEhhhceeeeeecCCcceEEEEEecCc-c---------------------eEEeeeec
Confidence            875    358999999999999999999999999999999998877653 2                     69999999


Q ss_pred             CeEEEEECCCc-ceEEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEecCCccceeecccc-cccccccccccCC
Q 001415          596 FSIKFWDMDSV-QLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENL-AYDASRTSENSKN  673 (1082)
Q Consensus       596 g~i~iwd~~~~-~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~  673 (1082)
                      ++|++||+.++ +++..+..|...  +  -.+...+++|++++.|+.|++||..++ .+.+.+.+. ...+.  .+++  
T Consensus       392 ~~IkvWdl~~~~~c~~tl~~h~~~--v--~~l~~~~~~Lvs~~aD~~Ik~WD~~~~-~~~~~~~~~~~~~v~--~l~~--  462 (537)
T KOG0274|consen  392 TTIKVWDLRTKRKCIHTLQGHTSL--V--SSLLLRDNFLVSSSADGTIKLWDAEEG-ECLRTLEGRHVGGVS--ALAL--  462 (537)
T ss_pred             cceEeecCCchhhhhhhhcCCccc--c--cccccccceeEeccccccEEEeecccC-ceeeeeccCCcccEE--Eeec--
Confidence            99999999999 999999887662  3  334456889999999999999999998 667777663 33322  2222  


Q ss_pred             CCccccCCCCceeeeccCCceeEEEecccCCCCcc
Q 001415          674 GDVRSLADVKPRITEESNDKSKVWKLTELSEPNQC  708 (1082)
Q Consensus       674 ~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~  708 (1082)
                             ....++.++.++.+++||+..+......
T Consensus       463 -------~~~~il~s~~~~~~~l~dl~~~~~~~~l  490 (537)
T KOG0274|consen  463 -------GKEEILCSSDDGSVKLWDLRSGTLIRTL  490 (537)
T ss_pred             -------CcceEEEEecCCeeEEEecccCchhhhh
Confidence                   1478899999999999999876554433

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=99.95  E-value=5.8e-27  Score=233.78  Aligned_cols=285  Identities=19%  Similarity=0.328  Sum_probs=232.2

Q ss_pred             ccCCCCceeEEEEecCCCeEEEEeCCCeEEEEEccCCceeeEEEEeeccccCeeEEEecCCCCceEEEEEeCCCcEEEEE
Q 001415          416 VKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWD  495 (1082)
Q Consensus       416 ~~~h~~~V~~l~~spdg~~las~~~d~~v~iwd~~~~~~~~~~~~~~~h~~~V~~l~fs~dg~~~~l~s~s~d~~i~vwd  495 (1082)
                      +..|.+.|..+.|-++...|++|+.|..|++|++..++ .....++.|-.++|+.+.|.++++  .+++++.|+.+++|+
T Consensus       171 ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k-~~~~~tLaGs~g~it~~d~d~~~~--~~iAas~d~~~r~Wn  247 (459)
T KOG0288|consen  171 LDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEK-SELISTLAGSLGNITSIDFDSDNK--HVIAASNDKNLRLWN  247 (459)
T ss_pred             hhccccccceeEEccCcchhhhcchhhhhhhhhcccch-hhhhhhhhccCCCcceeeecCCCc--eEEeecCCCceeeee
Confidence            77899999999999999999999999999999998876 223337888889999999999999  789999999999999


Q ss_pred             ccCCceeEEeecCCcCeEEEeeeecCCceEEEEecCCCcEEEEecCCCCceeeecCCCCceEEEEEccCCCeeeeccccc
Q 001415          496 ATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKR  575 (1082)
Q Consensus       496 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~  575 (1082)
                      +.+.+...++.||.+.|+++.|.-..  ..+++|+.|.+|+.||+....+..+.. ....+..+..+             
T Consensus       248 vd~~r~~~TLsGHtdkVt~ak~~~~~--~~vVsgs~DRtiK~WDl~k~~C~kt~l-~~S~cnDI~~~-------------  311 (459)
T KOG0288|consen  248 VDSLRLRHTLSGHTDKVTAAKFKLSH--SRVVSGSADRTIKLWDLQKAYCSKTVL-PGSQCNDIVCS-------------  311 (459)
T ss_pred             ccchhhhhhhcccccceeeehhhccc--cceeeccccchhhhhhhhhhheecccc-ccccccceEec-------------
Confidence            99999999999999999999986544  349999999999999998754443322 12222222222             


Q ss_pred             ceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEecCCcccee
Q 001415          576 SLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLR  655 (1082)
Q Consensus       576 ~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~iwd~~~~~~~~~  655 (1082)
                                ...+++|-.|+.|++||+++..+......++   .|+++..+++|..|.+.+.|..+.+.|+++. ....
T Consensus       312 ----------~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg---~vtSl~ls~~g~~lLsssRDdtl~viDlRt~-eI~~  377 (459)
T KOG0288|consen  312 ----------ISDVISGHFDKKVRFWDIRSADKTRSVPLGG---RVTSLDLSMDGLELLSSSRDDTLKVIDLRTK-EIRQ  377 (459)
T ss_pred             ----------ceeeeecccccceEEEeccCCceeeEeecCc---ceeeEeeccCCeEEeeecCCCceeeeecccc-cEEE
Confidence                      1247778899999999999999999988766   4899999999999999999999999988765 1111


Q ss_pred             ecccccccccccccccCCCCccccCCCCceeeeccCCceeEEEecccCCCCccccccccCcccccceeEEEEccCCceee
Q 001415          656 TFENLAYDASRTSENSKNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAIL  735 (1082)
Q Consensus       656 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~  735 (1082)
                      .+                                                                      +..|-.  
T Consensus       378 ~~----------------------------------------------------------------------sA~g~k--  385 (459)
T KOG0288|consen  378 TF----------------------------------------------------------------------SAEGFK--  385 (459)
T ss_pred             Ee----------------------------------------------------------------------eccccc--
Confidence            11                                                                      111100  


Q ss_pred             ecccCCeEEEeeccccccCCCCCcccccCccccCCCCcceeecccCCCCCCCCccEEEeecCCCeEEEee-CCeEEEEec
Q 001415          736 ALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNM  814 (1082)
Q Consensus       736 ~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~l~~~s-dg~i~iwd~  814 (1082)
                                                                       .....+.+.|||++.|+++|+ ||.|+||++
T Consensus       386 -------------------------------------------------~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v  416 (459)
T KOG0288|consen  386 -------------------------------------------------CASDWTRVVFSPDGSYVAAGSADGSVYIWSV  416 (459)
T ss_pred             -------------------------------------------------cccccceeEECCCCceeeeccCCCcEEEEEc
Confidence                                                             122367889999999999997 899999999


Q ss_pred             CCCeeEEEECCCCC--CeeEEEEecCCCcEEEEEeCCCcEEEE
Q 001415          815 MTFKTMATFMPPPP--AATFLAFHPQDNNIIAIGMDDSSIQIY  855 (1082)
Q Consensus       815 ~~~~~~~~~~~~~~--~v~~l~~sp~~~~~lasg~~dg~v~iw  855 (1082)
                      .++++...+.....  .|++++|+| .|..|++++.++.+.+|
T Consensus       417 ~tgKlE~~l~~s~s~~aI~s~~W~~-sG~~Llsadk~~~v~lW  458 (459)
T KOG0288|consen  417 FTGKLEKVLSLSTSNAAITSLSWNP-SGSGLLSADKQKAVTLW  458 (459)
T ss_pred             cCceEEEEeccCCCCcceEEEEEcC-CCchhhcccCCcceEec
Confidence            99999988876544  499999999 89999999999999999

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.95  E-value=6.4e-26  Score=254.78  Aligned_cols=318  Identities=18%  Similarity=0.271  Sum_probs=225.9

Q ss_pred             CCCCceEEEEecCCCeEEEEEc--CCCcEEEEEccccceeeeeceeeeccCCCCcccccccccCCCCceeEEEEecCCCe
Q 001415          357 QGSSPMSMDFHPVQQTLLLVGT--NVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSL  434 (1082)
Q Consensus       357 h~~~v~~~~~spdg~~llasgs--~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~  434 (1082)
                      ++..|.+++.+|||.. +|||+  .||.++||+.+.=-.    ....++..   .+........|.+.|+|+.|||||++
T Consensus        12 ~~~~IfSIdv~pdg~~-~aTgGq~~d~~~~iW~~~~vl~----~~~~~~~~---l~k~l~~m~~h~~sv~CVR~S~dG~~   83 (942)
T KOG0973|consen   12 NEKSIFSIDVHPDGVK-FATGGQVLDGGIVIWSQDPVLD----EKEEKNEN---LPKHLCTMDDHDGSVNCVRFSPDGSY   83 (942)
T ss_pred             CCeeEEEEEecCCcee-EecCCccccccceeeccccccc----hhhhhhcc---cchhheeeccccCceeEEEECCCCCe
Confidence            3567999999999995 99999  899999999753110    01111111   22233347789999999999999999


Q ss_pred             EEEEeCCCeEEEEEccC----------C-----ceeeEEEEeeccccCeeEEEecCCCCceEEEEEeCCCcEEEEEccCC
Q 001415          435 FGVAYSRHIVQIYSYHG----------G-----DEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNG  499 (1082)
Q Consensus       435 las~~~d~~v~iwd~~~----------~-----~~~~~~~~~~~h~~~V~~l~fs~dg~~~~l~s~s~d~~i~vwd~~~~  499 (1082)
                      ||+|+.|+.|.||....          |     +..+....+.+|...|..++|+|++.  +||+++.|++|.|||..+.
T Consensus        84 lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~--~lvS~s~DnsViiwn~~tF  161 (942)
T KOG0973|consen   84 LASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDS--LLVSVSLDNSVIIWNAKTF  161 (942)
T ss_pred             EeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCcc--EEEEecccceEEEEccccc
Confidence            99999999999999873          0     11234557889999999999999999  8999999999999999999


Q ss_pred             ceeEEeecCCcCeEEEeeeecCCceEEEEecCCCcEEEEecCCCCceeeecCCC------CceEEEEEccCCCeeeeccc
Q 001415          500 AKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPG------RWCTTMAYSADGTRTYQGFR  573 (1082)
Q Consensus       500 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~------~~v~~~~~s~d~~~~~~~~~  573 (1082)
                      +.+.++.+|.+.|..+.|.|.  |+++++-+.|++|++|+..+-.....++.+-      ..+..+.|||||.       
T Consensus       162 ~~~~vl~~H~s~VKGvs~DP~--Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~-------  232 (942)
T KOG0973|consen  162 ELLKVLRGHQSLVKGVSWDPI--GKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGH-------  232 (942)
T ss_pred             eeeeeeecccccccceEECCc--cCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcC-------
Confidence            999999999999999998654  5899999999999999976644444444332      2344555555555       


Q ss_pred             ccceeEEEecCCCCEEEEEe----CCCeEEEEECCCcceEEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEecC
Q 001415          574 KRSLGVVQFDTTKNRFLAAG----DDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSD  649 (1082)
Q Consensus       574 ~~~i~~~~~~~~~~~l~~~~----~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~iwd~~~  649 (1082)
                                    +|++..    .-.++.|.+-.+-+.-..+-+|..  ++.+++|+|.   |+-.-..         +
T Consensus       233 --------------~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~--p~evvrFnP~---lfe~~~~---------n  284 (942)
T KOG0973|consen  233 --------------HLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSA--PVEVVRFNPK---LFERNNK---------N  284 (942)
T ss_pred             --------------eecchhhccCCcceeEEEecCCceeeeeeecCCC--ceEEEEeChH---Hhccccc---------c
Confidence                          666532    344677877766666666766655  8899999982   0000000         0


Q ss_pred             CccceeecccccccccccccccCCCCccccCC--CCceeeeccCCceeEEEecccCCCCccccccccCcccccceeEEEE
Q 001415          650 GIRLLRTFENLAYDASRTSENSKNGDVRSLAD--VKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIF  727 (1082)
Q Consensus       650 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~--~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  727 (1082)
                      |...                         .++  -..+++|+.|+++.||......+...+..+      ....|.+++|
T Consensus       285 g~~~-------------------------~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~l------f~~SI~DmsW  333 (942)
T KOG0973|consen  285 GTST-------------------------QPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIHNL------FNKSIVDMSW  333 (942)
T ss_pred             CCcc-------------------------CCCcceEEEEEecCCccEEEEecCCCCchhhhhhh------hcCceeeeeE
Confidence            0000                         000  013456666666666665433322222222      5677889999


Q ss_pred             ccCCceeeecccCCeEEEeeccccc
Q 001415          728 TNSGNAILALASNAIHLLWKWQRTE  752 (1082)
Q Consensus       728 s~~~~~l~~~~~d~~i~iw~~~~~~  752 (1082)
                      +|||-.|++++.||+|.+..++..+
T Consensus       334 spdG~~LfacS~DGtV~~i~Fee~E  358 (942)
T KOG0973|consen  334 SPDGFSLFACSLDGTVALIHFEEKE  358 (942)
T ss_pred             cCCCCeEEEEecCCeEEEEEcchHH
Confidence            9999999999999999999887654

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.95  E-value=2e-25  Score=213.94  Aligned_cols=248  Identities=17%  Similarity=0.209  Sum_probs=194.2

Q ss_pred             CCCCCceEEEEecCCCeEEEEEcCCCcEEEEEcccc-ceeeeeceeeeccCCCCcccccccccCCCCceeEEEEecCCCe
Q 001415          356 NQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSR-ERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSL  434 (1082)
Q Consensus       356 ~h~~~v~~~~~spdg~~llasgs~dg~i~iwd~~~~-~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~  434 (1082)
                      ...+.|.+++|||....++++||-||+|++|+++.. ....                  +....|.++|.+++||.||..
T Consensus        25 pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~------------------ka~~~~~~PvL~v~Wsddgsk   86 (347)
T KOG0647|consen   25 PPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVP------------------KAQQSHDGPVLDVCWSDDGSK   86 (347)
T ss_pred             CcccchheeEeccccCceEEecccCCceEEEEEecCCcccc------------------hhhhccCCCeEEEEEccCCce
Confidence            367999999999977778889999999999999763 3222                  246789999999999999999


Q ss_pred             EEEEeCCCeEEEEEccCCceeeEEEEeeccccCeeEEEecCCCCceEEEEEeCCCcEEEEEccCCceeEEeecCCcCeEE
Q 001415          435 FGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYS  514 (1082)
Q Consensus       435 las~~~d~~v~iwd~~~~~~~~~~~~~~~h~~~V~~l~fs~dg~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~  514 (1082)
                      +++|+.|+.+++||+.+++..    .+..|.++|.++.|-+......|+|||.|++|+.||+++..++.++. -.+++++
T Consensus        87 Vf~g~~Dk~~k~wDL~S~Q~~----~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~-LPeRvYa  161 (347)
T KOG0647|consen   87 VFSGGCDKQAKLWDLASGQVS----QVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQ-LPERVYA  161 (347)
T ss_pred             EEeeccCCceEEEEccCCCee----eeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeee-ccceeee
Confidence            999999999999999999644    47789999999999887665589999999999999999999999887 5577887


Q ss_pred             EeeeecCCceEEEEecCCCcEEEEecCCCCceeeecCCCCceEEEEEccCCCeeeecccccceeEEEecCCCCEEEEEeC
Q 001415          515 VCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGD  594 (1082)
Q Consensus       515 ~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~  594 (1082)
                      +..-.    .+++.+..++.|.+++++++........  .        |         -+..+++++...+....+.|+-
T Consensus       162 ~Dv~~----pm~vVata~r~i~vynL~n~~te~k~~~--S--------p---------Lk~Q~R~va~f~d~~~~alGsi  218 (347)
T KOG0647|consen  162 ADVLY----PMAVVATAERHIAVYNLENPPTEFKRIE--S--------P---------LKWQTRCVACFQDKDGFALGSI  218 (347)
T ss_pred             hhccC----ceeEEEecCCcEEEEEcCCCcchhhhhc--C--------c---------ccceeeEEEEEecCCceEeeee
Confidence            76432    4788899999999999976543331111  0        0         0113445555555556789999


Q ss_pred             CCeEEEEECCCc--ceEEEEecCCC-------CCCcCeEEEcCCCCEEEEEECCCcEEEEEecC
Q 001415          595 DFSIKFWDMDSV--QLLTSIDADGG-------LPASPRIRFNKDGCLLAVSTNDNGIKILATSD  649 (1082)
Q Consensus       595 dg~i~iwd~~~~--~~~~~~~~~~~-------~~~i~~~~~s~dg~~l~~~~~dg~i~iwd~~~  649 (1082)
                      +|.+-|..+..+  +.-..++.|..       ...|++++|+|.-..|++++.||++.+||-..
T Consensus       219 EGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkda  282 (347)
T KOG0647|consen  219 EGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDA  282 (347)
T ss_pred             cceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEeecccceEEEecCCceEEEecchh
Confidence            999999988876  33344444432       33577899999888899999999999998643

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=99.95  E-value=2.4e-25  Score=249.33  Aligned_cols=287  Identities=18%  Similarity=0.275  Sum_probs=237.6

Q ss_pred             CCCCceeEEEEecCCCeEEEEeCCCeEEEEEccCCceeeEEEEeeccccCeeEEEecCCCCceEEEEEeCCCcEEEEEcc
Q 001415          418 DPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDAT  497 (1082)
Q Consensus       418 ~h~~~V~~l~~spdg~~las~~~d~~v~iwd~~~~~~~~~~~~~~~h~~~V~~l~fs~dg~~~~l~s~s~d~~i~vwd~~  497 (1082)
                      .|...+.+..|.  +.++++++.+.+|++||..++..+..  .+.||.+.|++++|...+.  ++++|+.|.++++||..
T Consensus       206 ~~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~i~~--~l~GH~g~V~~l~~~~~~~--~lvsgS~D~t~rvWd~~  279 (537)
T KOG0274|consen  206 TDDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYLILT--RLVGHFGGVWGLAFPSGGD--KLVSGSTDKTERVWDCS  279 (537)
T ss_pred             cCcchhhhheee--cCeEEecCCCceeEEeecccceEEEe--eccCCCCCceeEEEecCCC--EEEEEecCCcEEeEecC
Confidence            467789999998  67899999999999999999887662  3899999999999987555  79999999999999999


Q ss_pred             CCceeEEeecCCcCeEEEeeeecCCceEEEEecCCCcEEEEecCCCCceeeecCCCCceEEEEEccCCCeeeecccccce
Q 001415          498 NGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSL  577 (1082)
Q Consensus       498 ~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~i  577 (1082)
                      +|.+.+++.+|.+.|.++...+    .++++|+.|.+|++|++.++.....+.+|..+|.++...               
T Consensus       280 sg~C~~~l~gh~stv~~~~~~~----~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~---------------  340 (537)
T KOG0274|consen  280 TGECTHSLQGHTSSVRCLTIDP----FLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD---------------  340 (537)
T ss_pred             CCcEEEEecCCCceEEEEEccC----ceEeeccCCceEEEEeccCcceEEEeccccccEEEEEec---------------
Confidence            9999999999999999987532    578889999999999999988888888888888888776               


Q ss_pred             eEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEecCCccceeec
Q 001415          578 GVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTF  657 (1082)
Q Consensus       578 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~iwd~~~~~~~~~~~  657 (1082)
                              +..+++|+.|++|++||+.+++++..+.+|.+  .|.++.+... ..+++|+.|++|++||+.+..+++..+
T Consensus       341 --------~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~--~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl  409 (537)
T KOG0274|consen  341 --------EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTG--RVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTL  409 (537)
T ss_pred             --------CCEEEEEecCceEEEEEhhhceeeeeecCCcc--eEEEEEecCc-ceEEeeeeccceEeecCCchhhhhhhh
Confidence                    22799999999999999999999999998766  7999888765 899999999999999998763232222


Q ss_pred             ccccccccccccccCCCCccccCCCCceeeeccCCceeEEEecccCCCCccccccccCcccccceeEEEEccCCceeeec
Q 001415          658 ENLAYDASRTSENSKNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILAL  737 (1082)
Q Consensus       658 ~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~  737 (1082)
                      .+|                                                                             
T Consensus       410 ~~h-----------------------------------------------------------------------------  412 (537)
T KOG0274|consen  410 QGH-----------------------------------------------------------------------------  412 (537)
T ss_pred             cCC-----------------------------------------------------------------------------
Confidence            221                                                                             


Q ss_pred             ccCCeEEEeeccccccCCCCCcccccCccccCCCCcceeecccCCCCCCCCccEEEeecCCCeEEEee-CCeEEEEecCC
Q 001415          738 ASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMT  816 (1082)
Q Consensus       738 ~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~l~~~s-dg~i~iwd~~~  816 (1082)
                                                                      ..-+.++.  ..+++|++++ |++|++||..+
T Consensus       413 ------------------------------------------------~~~v~~l~--~~~~~Lvs~~aD~~Ik~WD~~~  442 (537)
T KOG0274|consen  413 ------------------------------------------------TSLVSSLL--LRDNFLVSSSADGTIKLWDAEE  442 (537)
T ss_pred             ------------------------------------------------cccccccc--cccceeEeccccccEEEeeccc
Confidence                                                            11111111  2455777776 78999999999


Q ss_pred             CeeEEEECC-CCCCeeEEEEecCCCcEEEEEeCCCcEEEEecccceeeeeecccc
Q 001415          817 FKTMATFMP-PPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHS  870 (1082)
Q Consensus       817 ~~~~~~~~~-~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~  870 (1082)
                      +++++++.+ |...|.++++.   ...+++++.||.+++||+.++++...+-.+.
T Consensus       443 ~~~~~~~~~~~~~~v~~l~~~---~~~il~s~~~~~~~l~dl~~~~~~~~l~~~~  494 (537)
T KOG0274|consen  443 GECLRTLEGRHVGGVSALALG---KEEILCSSDDGSVKLWDLRSGTLIRTLLSTD  494 (537)
T ss_pred             CceeeeeccCCcccEEEeecC---cceEEEEecCCeeEEEecccCchhhhhhhcc
Confidence            999999998 66888888886   3478889999999999999999888774443

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.95  E-value=3.7e-26  Score=233.85  Aligned_cols=299  Identities=18%  Similarity=0.269  Sum_probs=220.0

Q ss_pred             cCCCCceeeeccCCceeEEEecccCCCCccccccccCcccccceeEEEEccCCceeeecccCCeEEEeeccccccCCCCC
Q 001415          679 LADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGK  758 (1082)
Q Consensus       679 s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~  758 (1082)
                      .|.|.++++|+.|..|++||+..+.........-.|.  ....|.++.|++.|..|++.+...+.+++|-          
T Consensus       176 Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~--E~h~i~sl~ys~Tg~~iLvvsg~aqakl~DR----------  243 (641)
T KOG0772|consen  176 DPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPC--ETHQINSLQYSVTGDQILVVSGSAQAKLLDR----------  243 (641)
T ss_pred             cCCCceeeeccccceEEEEecccccccchhhhccCcc--cccccceeeecCCCCeEEEEecCcceeEEcc----------
Confidence            8999999999999999999999876544332222222  5667888999999988888888877777642          


Q ss_pred             cccccCccccCCCCcceeecccCCCCCCCCccEEEeecCCCeEEEeeCCeEEEEecCCCeeEEEECCCCCCeeEEEEecC
Q 001415          759 ATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQ  838 (1082)
Q Consensus       759 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~l~~~sdg~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~  838 (1082)
                                                            ||..++-...|.-+|-|+.      .-++|...++|.+|+|.
T Consensus       244 --------------------------------------dG~~~~e~~KGDQYI~Dm~------nTKGHia~lt~g~whP~  279 (641)
T KOG0772|consen  244 --------------------------------------DGFEIVEFSKGDQYIRDMY------NTKGHIAELTCGCWHPD  279 (641)
T ss_pred             --------------------------------------CCceeeeeeccchhhhhhh------ccCCceeeeeccccccC
Confidence                                                  3333333333333333432      34578889999999998


Q ss_pred             CCcEEEEEeCCCcEEEEecccce-eeeeec-----ccccCEEEEEEeCCCCEEEEEeCCCcEEEEEcCCcccccceeeec
Q 001415          839 DNNIIAIGMDDSSIQIYNVRVDE-VKSKLK-----GHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQI  912 (1082)
Q Consensus       839 ~~~~lasg~~dg~v~iwd~~~~~-~~~~l~-----~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~  912 (1082)
                      ....+.+++.||++||||+...+ .+..++     +..-+++.++|++||+++|.|+.||.|.+|+..+....  .....
T Consensus       280 ~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~--p~~~v  357 (641)
T KOG0772|consen  280 NKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVR--PVMKV  357 (641)
T ss_pred             cccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCceeeecCCCcchhhhcccCCceeeeecCCcccc--cceEe
Confidence            88899999999999999998643 233332     34457899999999999999999999999998553322  22233


Q ss_pred             cCCCCCCCCCCcEEEEcCCCcEEEE-EecCeEEEEEccCcc-eeeeeccCCCCcceeEEEEcCCCceEEEeec------C
Q 001415          913 PTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFETTKLE-CVKQWVPRESSAPITHATFSCDSQLVYACFL------D  984 (1082)
Q Consensus       913 ~~~~~~~~~~v~~~~fspdg~~l~~-~~d~~i~iwd~~~~~-~~~~~~~~~h~~~i~~l~~s~dg~~l~t~s~------d  984 (1082)
                      ...|.. ...|++|.||+||++|++ +.|+.+++||++..+ ++..+..-....+-+.++||||.++|++|..      .
T Consensus       358 k~AH~~-g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~  436 (641)
T KOG0772|consen  358 KDAHLP-GQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTA  436 (641)
T ss_pred             eeccCC-CCceeEEEeccccchhhhccCCCceeeeeccccccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCC
Confidence            333432 147999999999999999 999999999998654 3433332122456678999999999999873      4


Q ss_pred             CcEEEEecCCceeeeeeCCCeecCCCCCCCCceeeEEEEeCCCCCeEEEEecCCcEEEE-ccCC
Q 001415          985 ATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVF-EPLE 1047 (1082)
Q Consensus       985 g~v~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~~~~~~~d~~~l~s~~~dg~v~vW-~~~~ 1047 (1082)
                      |++.+||..+...+..+...    .      ..++.+.|+|. =+.+.+|+.||+++++ |...
T Consensus       437 g~L~f~d~~t~d~v~ki~i~----~------aSvv~~~Whpk-LNQi~~gsgdG~~~vyYdp~~  489 (641)
T KOG0772|consen  437 GTLFFFDRMTLDTVYKIDIS----T------ASVVRCLWHPK-LNQIFAGSGDGTAHVYYDPNE  489 (641)
T ss_pred             ceEEEEeccceeeEEEecCC----C------ceEEEEeecch-hhheeeecCCCceEEEECccc
Confidence            78999999999999988722    1      34558999995 4667788889998875 4433

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.94  E-value=1.4e-25  Score=215.32  Aligned_cols=296  Identities=15%  Similarity=0.278  Sum_probs=239.6

Q ss_pred             ceee-ecCCCCCceEEEEecCCCeEEEEEcCCCcEEEEEccccceeeeeceeeeccCCCCcccccccccCCCCceeEEEE
Q 001415          350 TVTR-TLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIW  428 (1082)
Q Consensus       350 ~~~~-~~~h~~~v~~~~~spdg~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~  428 (1082)
                      .+.+ +.+|++.||.++...... ++.+++.|.+-+||.+++|.++.+                   +.||.+.|++++|
T Consensus       139 ~lvre~~GHkDGiW~Vaa~~tqp-i~gtASADhTA~iWs~Esg~CL~~-------------------Y~GH~GSVNsikf  198 (481)
T KOG0300|consen  139 RLVRELEGHKDGIWHVAADSTQP-ICGTASADHTARIWSLESGACLAT-------------------YTGHTGSVNSIKF  198 (481)
T ss_pred             eehhhhcccccceeeehhhcCCc-ceeecccccceeEEeeccccceee-------------------ecccccceeeEEe
Confidence            3444 445999999999887777 799999999999999999999985                   8899999999999


Q ss_pred             ecCCCeEEEEeCCCeEEEEEc------cC--------C-----------------------ceeeEEEEeeccccCeeEE
Q 001415          429 SPDGSLFGVAYSRHIVQIYSY------HG--------G-----------------------DEVRQHLEIDAHVGGVNDI  471 (1082)
Q Consensus       429 spdg~~las~~~d~~v~iwd~------~~--------~-----------------------~~~~~~~~~~~h~~~V~~l  471 (1082)
                      ++.+.++++++.|++..||..      ..        +                       ..-.++..+.+|.+.|.+.
T Consensus       199 h~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~  278 (481)
T KOG0300|consen  199 HNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSAC  278 (481)
T ss_pred             ccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEeh
Confidence            999999999999999999951      11        0                       0012355788999999999


Q ss_pred             EecCCCCceEEEEEeCCCcEEEEEccCCceeEEeecCCcCeEEEeeeecCCceEEEEecCCCcEEEEecCCCC-ceeeec
Q 001415          472 AFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLG-SRVDYE  550 (1082)
Q Consensus       472 ~fs~dg~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~-~~~~~~  550 (1082)
                      .|-..|+  -+++++.|.+..+||+++|..+..+.||....+.++-+|..  .++++.+.|.+.++||++..- ....+.
T Consensus       279 dWL~gg~--Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHptQ--rLVvTsSrDtTFRLWDFReaI~sV~VFQ  354 (481)
T KOG0300|consen  279 DWLAGGQ--QMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHPTQ--RLVVTSSRDTTFRLWDFREAIQSVAVFQ  354 (481)
T ss_pred             hhhcCcc--eeeeeeccccceeeeeccCceeccccCcchhccccccCCcc--eEEEEeccCceeEeccchhhcceeeeec
Confidence            9999999  59999999999999999999999999999999999887655  789999999999999998432 234677


Q ss_pred             CCCCceEEEEEccCCCeeeecccccceeEEEecCCCCEEEEEeCCCeEEEEECCCcc-eEEEEecCCCCCCcCeEEEcCC
Q 001415          551 APGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQ-LLTSIDADGGLPASPRIRFNKD  629 (1082)
Q Consensus       551 ~~~~~v~~~~~s~d~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~~~i~~~~~s~d  629 (1082)
                      +|...|+++.|..|.+                      +++|+.|.+|++||++... ++.++....   +++.++.+..
T Consensus       355 GHtdtVTS~vF~~dd~----------------------vVSgSDDrTvKvWdLrNMRsplATIRtdS---~~NRvavs~g  409 (481)
T KOG0300|consen  355 GHTDTVTSVVFNTDDR----------------------VVSGSDDRTVKVWDLRNMRSPLATIRTDS---PANRVAVSKG  409 (481)
T ss_pred             ccccceeEEEEecCCc----------------------eeecCCCceEEEeeeccccCcceeeecCC---ccceeEeecC
Confidence            7888888888777664                      9999999999999998654 566665443   5788999998


Q ss_pred             CCEEEEEECCCcEEEEEecCCccceeecccccccccccccccCCCCccccCCCCceeeeccCCceeEEEecccCCCCccc
Q 001415          630 GCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCR  709 (1082)
Q Consensus       630 g~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~  709 (1082)
                      +..++.-..+..|++||++.. ++.+..+                                                   
T Consensus       410 ~~iIAiPhDNRqvRlfDlnG~-RlaRlPr---------------------------------------------------  437 (481)
T KOG0300|consen  410 HPIIAIPHDNRQVRLFDLNGN-RLARLPR---------------------------------------------------  437 (481)
T ss_pred             CceEEeccCCceEEEEecCCC-ccccCCc---------------------------------------------------
Confidence            889999989999999998654 2211110                                                   


Q ss_pred             cccccCcccccceeEEEEccCC--ceeeecccCCeEEEeecc
Q 001415          710 SLRLPENLRATKISRLIFTNSG--NAILALASNAIHLLWKWQ  749 (1082)
Q Consensus       710 ~~~~~~~~~~~~i~~~~~s~~~--~~l~~~~~d~~i~iw~~~  749 (1082)
                         ...++|..-|.+++|..+-  .-|++++-|..+.-|++.
T Consensus       438 ---tsRqgHrRMV~c~AW~eehp~cnLftcGFDR~v~gW~in  476 (481)
T KOG0300|consen  438 ---TSRQGHRRMVTCCAWLEEHPACNLFTCGFDRMVAGWKIN  476 (481)
T ss_pred             ---ccccccceeeeeeeccccCcccccccccccceeeeeEec
Confidence               0012367778888887543  358899999999999765

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.94  E-value=2.8e-25  Score=213.96  Aligned_cols=307  Identities=16%  Similarity=0.241  Sum_probs=221.8

Q ss_pred             EEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEecCCccceeecccccccccccccccCCCCccccCCCCceeeecc
Q 001415          611 SIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKNGDVRSLADVKPRITEES  690 (1082)
Q Consensus       611 ~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~  690 (1082)
                      .+++|..  .|++++|+.||++|++++.|+.|++|++.+-..     +.|....      .                   
T Consensus        81 ~LKgH~~--~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~-----~eHr~~R------~-------------------  128 (420)
T KOG2096|consen   81 VLKGHKK--EVTDVAFSSDGKKLATISGDRSIRLWDVRDFEN-----KEHRCIR------Q-------------------  128 (420)
T ss_pred             hhhccCC--ceeeeEEcCCCceeEEEeCCceEEEEecchhhh-----hhhhHhh------c-------------------
Confidence            3444544  899999999999999999999999999876311     1111000      0                   


Q ss_pred             CCceeEEEecccCCCCccccccccCcccccceeEEEEccCCceeee-cccCCeEEEeeccccccCCCCCcccccCccccC
Q 001415          691 NDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILA-LASNAIHLLWKWQRTERNSSGKATASVAPQLWQ  769 (1082)
Q Consensus       691 d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~-~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~  769 (1082)
                                           .+    ..+..+.+.|.||-+.+++ +.....+++|.+....-   |.....  ..-||
T Consensus       129 ---------------------nv----e~dhpT~V~FapDc~s~vv~~~~g~~l~vyk~~K~~d---G~~~~~--~v~~D  178 (420)
T KOG2096|consen  129 ---------------------NV----EYDHPTRVVFAPDCKSVVVSVKRGNKLCVYKLVKKTD---GSGSHH--FVHID  178 (420)
T ss_pred             ---------------------cc----cCCCceEEEECCCcceEEEEEccCCEEEEEEeeeccc---CCCCcc--ccccc
Confidence                                 00    2235567888888765544 44456888887653221   111110  01122


Q ss_pred             CCCcceeecccCCCCCCCCccEEEeecCCCeEEEee-CCeEEEEecCCCeeEEEECCCCCCeeEEEEecCCCcEEEEEeC
Q 001415          770 PPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMD  848 (1082)
Q Consensus       770 ~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~l~~~s-dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasg~~  848 (1082)
                      -.  ..      ...|.-.+..+-...++++|++++ |..|.+|++. |+.+..+......-+..+.|| +|+++|+++.
T Consensus       179 ~~--~f------~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aavSP-~GRFia~~gF  248 (420)
T KOG2096|consen  179 NL--EF------ERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAVSP-DGRFIAVSGF  248 (420)
T ss_pred             cc--cc------chhcccceEEEeecCCceEEEEecCCCcEEEEecC-CceeeeeccccccccceeeCC-CCcEEEEecC
Confidence            10  00      012566677777778899999998 6779999999 899998887777788899999 9999999999


Q ss_pred             CCcEEEEecc---cc-----eeeeeecccccCEEEEEEeCCCCEEEEEeCCCcEEEEEcCCcccccc--eeeeccCCC-C
Q 001415          849 DSSIQIYNVR---VD-----EVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKN--RFLQIPTGR-T  917 (1082)
Q Consensus       849 dg~v~iwd~~---~~-----~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~--~~~~~~~~~-~  917 (1082)
                      .-.|++|.+-   .|     ..+..|+||.+.|.+++||++...+++++.||++++||++-......  ..+...... .
T Consensus       249 TpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~  328 (420)
T KOG2096|consen  249 TPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLH  328 (420)
T ss_pred             CCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEecCCCchHhhcCCcchh
Confidence            9999999873   22     34467899999999999999999999999999999999875322111  111111000 0


Q ss_pred             CCCCCCcEEEEcCCCcEEEEEecCeEEEEEccCcceeeeeccCCCCcceeEEEEcCCCceEEEeecCCcEEEEe
Q 001415          918 PTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFS  991 (1082)
Q Consensus       918 ~~~~~v~~~~fspdg~~l~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~dg~~l~t~s~dg~v~vwd  991 (1082)
                      ...+....++++|.|+.||.+....+++|..++|+....+. ..|+..|.+++|++||+++++++ |..++|+.
T Consensus       329 aag~~p~RL~lsP~g~~lA~s~gs~l~~~~se~g~~~~~~e-~~h~~~Is~is~~~~g~~~atcG-dr~vrv~~  400 (420)
T KOG2096|consen  329 AAGSEPVRLELSPSGDSLAVSFGSDLKVFASEDGKDYPELE-DIHSTTISSISYSSDGKYIATCG-DRYVRVIR  400 (420)
T ss_pred             hcCCCceEEEeCCCCcEEEeecCCceEEEEcccCccchhHH-HhhcCceeeEEecCCCcEEeeec-ceeeeeec
Confidence            01133468999999999999999999999999998887776 37899999999999999999986 78888865

>PTZ00421 coronin; Provisional

Probab=99.94  E-value=1.4e-24  Score=243.58  Aligned_cols=265  Identities=15%  Similarity=0.205  Sum_probs=200.7

Q ss_pred             ccceeEEEEccCCceeeecccCCeEEEeeccccccCCCCCcccccCccccCCCCcceeecccCCCCCCCCccEEEeec-C
Q 001415          719 ATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSK-N  797 (1082)
Q Consensus       719 ~~~i~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~-d  797 (1082)
                      ...|.....++++..+++++.+.....|+.....            ..++....|+.........+|...|.+++|+| +
T Consensus        20 ~~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~------------~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d   87 (493)
T PTZ00421         20 FLNVTPSTALWDCSNTIACNDRFIAVPWQQLGST------------AVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFD   87 (493)
T ss_pred             eeccccccccCCCCCcEeECCceEEEEEecCCce------------EEeeccccccCCCCCceEeCCCCCEEEEEEcCCC
Confidence            3445556677787778888888888888654221            11223333332221111234999999999999 8


Q ss_pred             CCeEEEee-CCeEEEEecCCC-------eeEEEECCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEecccceeeeeeccc
Q 001415          798 DSYVMSAS-GGKISLFNMMTF-------KTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGH  869 (1082)
Q Consensus       798 g~~l~~~s-dg~i~iwd~~~~-------~~~~~~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h  869 (1082)
                      +++|++++ |++|++||+.++       ..+..+.+|...|.+++|+|.++.+|++|+.|+.|+|||+.+++.+..+.+|
T Consensus        88 ~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h  167 (493)
T PTZ00421         88 PQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCH  167 (493)
T ss_pred             CCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCC
Confidence            88999997 799999999764       3567889999999999999954579999999999999999999999999999


Q ss_pred             ccCEEEEEEeCCCCEEEEEeCCCcEEEEEcCCcccccceeeeccCCCCCCCCCCcEEEEcCCCcEEEE-E----ecCeEE
Q 001415          870 SKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-V----HETQLA  944 (1082)
Q Consensus       870 ~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~-~----~d~~i~  944 (1082)
                      ...|.+++|+|+|.+|++++.|++|++||+.+++.     +....+|..  .....+.|.+++..+++ +    .|+.|+
T Consensus       168 ~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~-----v~tl~~H~~--~~~~~~~w~~~~~~ivt~G~s~s~Dr~Vk  240 (493)
T PTZ00421        168 SDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTI-----VSSVEAHAS--AKSQRCLWAKRKDLIITLGCSKSQQRQIM  240 (493)
T ss_pred             CCceEEEEEECCCCEEEEecCCCEEEEEECCCCcE-----EEEEecCCC--CcceEEEEcCCCCeEEEEecCCCCCCeEE
Confidence            99999999999999999999999999999998653     222334432  22456789998888776 3    368999


Q ss_pred             EEEccCcceeeeeccCCCCcceeEEEEcCCCceEEEee-cCCcEEEEecCCceeeeeeC
Q 001415          945 IFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACF-LDATVCVFSAANLKLRCRIN 1002 (1082)
Q Consensus       945 iwd~~~~~~~~~~~~~~h~~~i~~l~~s~dg~~l~t~s-~dg~v~vwd~~~~~~~~~~~ 1002 (1082)
                      +||+++...........+...+....|++|+.+|++++ .|+.|++||+.+++++....
T Consensus       241 lWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~  299 (493)
T PTZ00421        241 LWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSS  299 (493)
T ss_pred             EEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEee
Confidence            99998765432222112345667778999999999887 59999999999998776543

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.94  E-value=3.4e-26  Score=213.58  Aligned_cols=251  Identities=13%  Similarity=0.263  Sum_probs=210.0

Q ss_pred             eeecCCCCCceEEEEecCCCeEEEEEcCCCcEEEEEccccceeeeeceeeeccCCCCcccccccccCCCCceeEEEEec-
Q 001415          352 TRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP-  430 (1082)
Q Consensus       352 ~~~~~h~~~v~~~~~spdg~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~sp-  430 (1082)
                      .+.+.-.+.+..++||+.....+++++.||+++|||......                  +-..++.|..+|.++.|++ 
T Consensus        54 ~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~------------------Pi~~~kEH~~EV~Svdwn~~  115 (311)
T KOG0277|consen   54 CQSYDTEDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSK------------------PIHKFKEHKREVYSVDWNTV  115 (311)
T ss_pred             EEeeecccceeEeeecCCCcceEEEEecCceEEEeccCCCCc------------------chhHHHhhhhheEEeccccc
Confidence            344556789999999999888899999999999999533211                  1124889999999999999 


Q ss_pred             CCCeEEEEeCCCeEEEEEccCCceeeEEEEeeccccCeeEEEecCCCCceEEEEEeCCCcEEEEEccCCceeEEeecCCc
Q 001415          431 DGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEA  510 (1082)
Q Consensus       431 dg~~las~~~d~~v~iwd~~~~~~~~~~~~~~~h~~~V~~l~fs~dg~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~  510 (1082)
                      +++.+++++-|++|++|+...+..++   ++.||...|...+|+|.... +++++|.|+++++||++.......+..|..
T Consensus       116 ~r~~~ltsSWD~TiKLW~~~r~~Sv~---Tf~gh~~~Iy~a~~sp~~~n-lfas~Sgd~~l~lwdvr~~gk~~~i~ah~~  191 (311)
T KOG0277|consen  116 RRRIFLTSSWDGTIKLWDPNRPNSVQ---TFNGHNSCIYQAAFSPHIPN-LFASASGDGTLRLWDVRSPGKFMSIEAHNS  191 (311)
T ss_pred             cceeEEeeccCCceEeecCCCCcceE---eecCCccEEEEEecCCCCCC-eEEEccCCceEEEEEecCCCceeEEEeccc
Confidence            67778888999999999999888776   89999999999999998777 899999999999999987555555899999


Q ss_pred             CeEEEeeeecCCceEEEEecCCCcEEEEecCCCCc-eeeecCCCCceEEEEEccCCCeeeecccccceeEEEecCCCCEE
Q 001415          511 PVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGS-RVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRF  589 (1082)
Q Consensus       511 ~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~-~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~i~~~~~~~~~~~l  589 (1082)
                      .+.++.|+.... ..+++|+.|+.|+.||++..+. +..+.+|+-.|+.+.|||...                    ..|
T Consensus       192 Eil~cdw~ky~~-~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~--------------------~lL  250 (311)
T KOG0277|consen  192 EILCCDWSKYNH-NVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHA--------------------SLL  250 (311)
T ss_pred             eeEeecccccCC-cEEEecCCCceEEEEehhhccccceeecCCceEEEEEecCcchh--------------------hHh
Confidence            999999976544 7999999999999999998654 457788888899999988765                    258


Q ss_pred             EEEeCCCeEEEEECCCc-ceEEEEecCCCCCCcCeEEEcC-CCCEEEEEECCCcEEEEEe
Q 001415          590 LAAGDDFSIKFWDMDSV-QLLTSIDADGGLPASPRIRFNK-DGCLLAVSTNDNGIKILAT  647 (1082)
Q Consensus       590 ~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~i~~~~~s~-dg~~l~~~~~dg~i~iwd~  647 (1082)
                      ++++.|-+++|||...+ .++.+...|..  .+..+.|++ ++.++|+.+-|+.++||+.
T Consensus       251 aSasYDmT~riw~~~~~ds~~e~~~~HtE--Fv~g~Dws~~~~~~vAs~gWDe~l~Vw~p  308 (311)
T KOG0277|consen  251 ASASYDMTVRIWDPERQDSAIETVDHHTE--FVCGLDWSLFDPGQVASTGWDELLYVWNP  308 (311)
T ss_pred             hhccccceEEecccccchhhhhhhhccce--EEeccccccccCceeeecccccceeeecc
Confidence            89999999999998743 45556665554  578888988 7889999999999999974

>PTZ00421 coronin; Provisional

Probab=99.94  E-value=7e-25  Score=245.91  Aligned_cols=264  Identities=13%  Similarity=0.118  Sum_probs=197.6

Q ss_pred             CCCCceEEEEecCCCeEEEEEcCCCcEEEEEccccceeeeeceeeeccCCCCcccccccccCCCCceeEEEEec-CCCeE
Q 001415          357 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP-DGSLF  435 (1082)
Q Consensus       357 h~~~v~~~~~spdg~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~sp-dg~~l  435 (1082)
                      |-..|....+++|+.. +++++.+.....|+...+..+.      +.-.....+.....+.+|.+.|++++|+| ++++|
T Consensus        19 ~~~~i~~~~~~~d~~~-~~~~n~~~~a~~w~~~gg~~v~------~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~L   91 (493)
T PTZ00421         19 HFLNVTPSTALWDCSN-TIACNDRFIAVPWQQLGSTAVL------KHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKL   91 (493)
T ss_pred             ceeccccccccCCCCC-cEeECCceEEEEEecCCceEEe------eccccccCCCCCceEeCCCCCEEEEEEcCCCCCEE
Confidence            4466777888899774 6777778888899876654322      11111111112234789999999999999 89999


Q ss_pred             EEEeCCCeEEEEEccCCce----eeEEEEeeccccCeeEEEecCCCCceEEEEEeCCCcEEEEEccCCceeEEeecCCcC
Q 001415          436 GVAYSRHIVQIYSYHGGDE----VRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAP  511 (1082)
Q Consensus       436 as~~~d~~v~iwd~~~~~~----~~~~~~~~~h~~~V~~l~fs~dg~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~  511 (1082)
                      |+|+.|++|+|||+.++..    ......+.+|...|.+++|+|++.. +|++|+.|++|+|||+.+++.+..+.+|...
T Consensus        92 aSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~-iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~  170 (493)
T PTZ00421         92 FTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMN-VLASAGADMVVNVWDVERGKAVEVIKCHSDQ  170 (493)
T ss_pred             EEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCC-EEEEEeCCCEEEEEECCCCeEEEEEcCCCCc
Confidence            9999999999999986532    1233468899999999999998744 7999999999999999999999999999999


Q ss_pred             eEEEeeeecCCceEEEEecCCCcEEEEecCCCCceeeecCCCCceEEEEEccCCCeeeecccccceeEEEecCCCCEEEE
Q 001415          512 VYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLA  591 (1082)
Q Consensus       512 v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~i~~~~~~~~~~~l~~  591 (1082)
                      |.+++|+++  +.+|++++.|+.|++||++++.....+..|....                    ...+.|.+++..+++
T Consensus       171 V~sla~spd--G~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~--------------------~~~~~w~~~~~~ivt  228 (493)
T PTZ00421        171 ITSLEWNLD--GSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAK--------------------SQRCLWAKRKDLIIT  228 (493)
T ss_pred             eEEEEEECC--CCEEEEecCCCEEEEEECCCCcEEEEEecCCCCc--------------------ceEEEEcCCCCeEEE
Confidence            999999864  4799999999999999999876655555444321                    122334444446666


Q ss_pred             Ee----CCCeEEEEECCCcc-eEEEEecCCCCCCcCeEEEcCCCCEEEEEE-CCCcEEEEEecCCc
Q 001415          592 AG----DDFSIKFWDMDSVQ-LLTSIDADGGLPASPRIRFNKDGCLLAVST-NDNGIKILATSDGI  651 (1082)
Q Consensus       592 ~~----~dg~i~iwd~~~~~-~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~-~dg~i~iwd~~~~~  651 (1082)
                      ++    .|+.|++||+++.. .+.....+. ...+....|++++++|++++ .|+.|++||+.++.
T Consensus       229 ~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~-~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~  293 (493)
T PTZ00421        229 LGCSKSQQRQIMLWDTRKMASPYSTVDLDQ-SSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNER  293 (493)
T ss_pred             EecCCCCCCeEEEEeCCCCCCceeEeccCC-CCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCc
Confidence            44    47999999998754 333333222 22455567899999999887 59999999998873

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.94  E-value=1.3e-24  Score=209.28  Aligned_cols=314  Identities=15%  Similarity=0.191  Sum_probs=211.5

Q ss_pred             cccCCCCceeEEEEecCCCeEEEEeCCCeEEEEEccCCc-----eeeEEEEeeccccCeeEEEecCCCCceEEEEEeCCC
Q 001415          415 LVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGD-----EVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDK  489 (1082)
Q Consensus       415 ~~~~h~~~V~~l~~spdg~~las~~~d~~v~iwd~~~~~-----~~~~~~~~~~h~~~V~~l~fs~dg~~~~l~s~s~d~  489 (1082)
                      .+++|.+.|++++||.||++||+++.|++|+||++..-.     +++...    .-+-.+.++|+||-+. +++++-...
T Consensus        81 ~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nv----e~dhpT~V~FapDc~s-~vv~~~~g~  155 (420)
T KOG2096|consen   81 VLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNV----EYDHPTRVVFAPDCKS-VVVSVKRGN  155 (420)
T ss_pred             hhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccc----cCCCceEEEECCCcce-EEEEEccCC
Confidence            589999999999999999999999999999999997532     222111    1224678999999986 566666667


Q ss_pred             cEEEEEccCCceeEEeecCCcCeEEEeeeecCCceEEEEecCCCcEEEEecCCCCceeeecCCCCceEEEEEccCCCeee
Q 001415          490 TIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTY  569 (1082)
Q Consensus       490 ~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~  569 (1082)
                      ++++|.+...+. ....-|.-.+-.+.|..                               .|...+..           
T Consensus       156 ~l~vyk~~K~~d-G~~~~~~v~~D~~~f~~-------------------------------kh~v~~i~-----------  192 (420)
T KOG2096|consen  156 KLCVYKLVKKTD-GSGSHHFVHIDNLEFER-------------------------------KHQVDIIN-----------  192 (420)
T ss_pred             EEEEEEeeeccc-CCCCcccccccccccch-------------------------------hcccceEE-----------
Confidence            788887542221 00000100010011100                               01111111           


Q ss_pred             ecccccceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEecC
Q 001415          570 QGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSD  649 (1082)
Q Consensus       570 ~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~iwd~~~  649 (1082)
                                +-....+.++++++.|..|.+|++. |+.+..+.....  .-...+.||+|+++++++-...|++|.+--
T Consensus       193 ----------iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~--~n~~aavSP~GRFia~~gFTpDVkVwE~~f  259 (420)
T KOG2096|consen  193 ----------IGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQS--SNYDAAVSPDGRFIAVSGFTPDVKVWEPIF  259 (420)
T ss_pred             ----------EeecCCceEEEEecCCCcEEEEecC-Cceeeeeccccc--cccceeeCCCCcEEEEecCCCCceEEEEEe
Confidence                      1122233478899999999999998 888887765433  456789999999999999999999997532


Q ss_pred             CccceeecccccccccccccccCCCCccccCCCCceeeeccCCceeEEEecccCCCCccccccccCcccccceeEEEEcc
Q 001415          650 GIRLLRTFENLAYDASRTSENSKNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTN  729 (1082)
Q Consensus       650 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~  729 (1082)
                      ++      .+.-.                             ...+++.              +.  +|...|..++|++
T Consensus       260 ~k------dG~fq-----------------------------ev~rvf~--------------Lk--GH~saV~~~aFsn  288 (420)
T KOG2096|consen  260 TK------DGTFQ-----------------------------EVKRVFS--------------LK--GHQSAVLAAAFSN  288 (420)
T ss_pred             cc------Ccchh-----------------------------hhhhhhe--------------ec--cchhheeeeeeCC
Confidence            20      00000                             1112222              22  2999999999999


Q ss_pred             CCceeeecccCCeEEEeeccccc-cCCCCCcccccCccccCCCCcceeecccCCCCCCCCccEEEeecCCCeEEEeeCCe
Q 001415          730 SGNAILALASNAIHLLWKWQRTE-RNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGK  808 (1082)
Q Consensus       730 ~~~~l~~~~~d~~i~iw~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~l~~~sdg~  808 (1082)
                      +..++++.+.||.+++||.+..- ...+.+.+.          +|.   ..+.  ........++++|.|+.||.+....
T Consensus       289 ~S~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk----------~g~---~pl~--aag~~p~RL~lsP~g~~lA~s~gs~  353 (420)
T KOG2096|consen  289 SSTRAVTVSKDGKWRIWDTDVRYEAGQDPKILK----------EGS---APLH--AAGSEPVRLELSPSGDSLAVSFGSD  353 (420)
T ss_pred             CcceeEEEecCCcEEEeeccceEecCCCchHhh----------cCC---cchh--hcCCCceEEEeCCCCcEEEeecCCc
Confidence            99999999999999999986431 111111111          110   0010  1233344899999999999999899


Q ss_pred             EEEEecCCCeeEEEEC-CCCCCeeEEEEecCCCcEEEEEeCCCcEEEEec
Q 001415          809 ISLFNMMTFKTMATFM-PPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNV  857 (1082)
Q Consensus       809 i~iwd~~~~~~~~~~~-~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~  857 (1082)
                      ++++..++++....+. .|...|.+++|++ +|+++|+++ |..++++.-
T Consensus       354 l~~~~se~g~~~~~~e~~h~~~Is~is~~~-~g~~~atcG-dr~vrv~~n  401 (420)
T KOG2096|consen  354 LKVFASEDGKDYPELEDIHSTTISSISYSS-DGKYIATCG-DRYVRVIRN  401 (420)
T ss_pred             eEEEEcccCccchhHHHhhcCceeeEEecC-CCcEEeeec-ceeeeeecC
Confidence            9999999988776664 5788899999999 999999886 678888763

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.94  E-value=5.1e-25  Score=235.85  Aligned_cols=277  Identities=18%  Similarity=0.243  Sum_probs=235.4

Q ss_pred             eEEEEecCCCeEEEEEcCCCcEEEEEccccceeeeeceeeeccCCCCcccccccccCCCCceeEEEEecCCCeEEEEeCC
Q 001415          362 MSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSR  441 (1082)
Q Consensus       362 ~~~~~spdg~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d  441 (1082)
                      +-+.||..+  +||+|. ...|++|+..++.....                   ..-+...|+++.|+++|++||+|..+
T Consensus       181 nlldWss~n--~laVal-g~~vylW~~~s~~v~~l-------------------~~~~~~~vtSv~ws~~G~~LavG~~~  238 (484)
T KOG0305|consen  181 NLLDWSSAN--VLAVAL-GQSVYLWSASSGSVTEL-------------------CSFGEELVTSVKWSPDGSHLAVGTSD  238 (484)
T ss_pred             hHhhcccCC--eEEEEe-cceEEEEecCCCceEEe-------------------EecCCCceEEEEECCCCCEEEEeecC
Confidence            446788655  477664 56899999999886542                   22337899999999999999999999


Q ss_pred             CeEEEEEccCCceeeEEEEeec-cccCeeEEEecCCCCceEEEEEeCCCcEEEEEccCCceeEE-eecCCcCeEEEeeee
Q 001415          442 HIVQIYSYHGGDEVRQHLEIDA-HVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYI-FEGHEAPVYSVCPHH  519 (1082)
Q Consensus       442 ~~v~iwd~~~~~~~~~~~~~~~-h~~~V~~l~fs~dg~~~~l~s~s~d~~i~vwd~~~~~~~~~-~~~h~~~v~~~~~~~  519 (1082)
                      |.|.|||..+.+.++   .+.+ |...|.+++|.  +.  .+.+|+.|+.|..+|++..+.... +.+|...|..+.|++
T Consensus       239 g~v~iwD~~~~k~~~---~~~~~h~~rvg~laW~--~~--~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~  311 (484)
T KOG0305|consen  239 GTVQIWDVKEQKKTR---TLRGSHASRVGSLAWN--SS--VLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSP  311 (484)
T ss_pred             CeEEEEehhhccccc---cccCCcCceeEEEecc--Cc--eEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECC
Confidence            999999999888776   6777 99999999998  44  689999999999999998876655 889999999999976


Q ss_pred             cCCceEEEEecCCCcEEEEecCCCCceeeecCCCCceEEEEEccCCCeeeecccccceeEEEecCCCCEEEEEe--CCCe
Q 001415          520 KENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAG--DDFS  597 (1082)
Q Consensus       520 ~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~i~~~~~~~~~~~l~~~~--~dg~  597 (1082)
                      +.  .++++|+.|+.+.|||.....+...+..|...|..++|+|-..                    ..||+|+  .|+.
T Consensus       312 d~--~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~--------------------~lLAsGGGs~D~~  369 (484)
T KOG0305|consen  312 DG--NQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQS--------------------GLLATGGGSADRC  369 (484)
T ss_pred             CC--CeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCcc--------------------CceEEcCCCcccE
Confidence            54  7999999999999999998899999999999999999998754                    3577754  7999


Q ss_pred             EEEEECCCcceEEEEecCCCCCCcCeEEEcCCCCEEEEE--ECCCcEEEEEecCCccceeecccccccccccccccCCCC
Q 001415          598 IKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVS--TNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKNGD  675 (1082)
Q Consensus       598 i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~--~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  675 (1082)
                      |++||..+++.+..+....   .|.++.|++..+-|+++  ..++.|.||+..+. .....+.+|...+.  .+++    
T Consensus       370 i~fwn~~~g~~i~~vdtgs---QVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~-~~~~~l~gH~~RVl--~la~----  439 (484)
T KOG0305|consen  370 IKFWNTNTGARIDSVDTGS---QVCSLIWSKKYKELLSTHGYSENQITLWKYPSM-KLVAELLGHTSRVL--YLAL----  439 (484)
T ss_pred             EEEEEcCCCcEecccccCC---ceeeEEEcCCCCEEEEecCCCCCcEEEEecccc-ceeeeecCCcceeE--EEEE----
Confidence            9999999999999887654   49999999988766654  45778999999886 77888889988866  5666    


Q ss_pred             ccccCCCCceeeeccCCceeEEEeccc
Q 001415          676 VRSLADVKPRITEESNDKSKVWKLTEL  702 (1082)
Q Consensus       676 ~~~s~~~~~l~~~~~d~~i~iw~~~~~  702 (1082)
                         +|||..+++++.|.++++|++-..
T Consensus       440 ---SPdg~~i~t~a~DETlrfw~~f~~  463 (484)
T KOG0305|consen  440 ---SPDGETIVTGAADETLRFWNLFDE  463 (484)
T ss_pred             ---CCCCCEEEEecccCcEEeccccCC
Confidence               999999999999999999998753

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.94  E-value=2.2e-24  Score=208.12  Aligned_cols=242  Identities=21%  Similarity=0.239  Sum_probs=202.7

Q ss_pred             CCCCCCCccEEEeecCCCeEEEee-CCeEEEEecCCCeeEEEECCCCCCeeEEEEecCCCc--EEEEEeCCCcEEEEecc
Q 001415          782 DSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNN--IIAIGMDDSSIQIYNVR  858 (1082)
Q Consensus       782 ~~~~~~~i~~l~~s~dg~~l~~~s-dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~--~lasg~~dg~v~iwd~~  858 (1082)
                      ...|...++++++  ++.++|+|+ |.+|+|||+.+...+..+..|.+.|+++.|.+ ...  .|.+|++||.|.+|+..
T Consensus        39 ~~aH~~sitavAV--s~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~-~~S~shLlS~sdDG~i~iw~~~  115 (362)
T KOG0294|consen   39 FSAHAGSITALAV--SGPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYP-PLSKSHLLSGSDDGHIIIWRVG  115 (362)
T ss_pred             ccccccceeEEEe--cceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecC-CcchhheeeecCCCcEEEEEcC
Confidence            3459999999998  678999997 78999999999999999999999999999998 543  78899999999999999


Q ss_pred             cceeeeeecccccCEEEEEEeCCCCEEEEEeCCCcEEEEEcCCcccccceeeeccCCCCCCCCCCcEEEEcCCCcEEEEE
Q 001415          859 VDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV  938 (1082)
Q Consensus       859 ~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~  938 (1082)
                      ..+++..+++|.+.|+.++.+|.+++-++.+.|+.++.||+-.+....  ++.. .      ...+.+.|+|.|.+++.+
T Consensus       116 ~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~--v~~L-~------~~at~v~w~~~Gd~F~v~  186 (362)
T KOG0294|consen  116 SWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAF--VLNL-K------NKATLVSWSPQGDHFVVS  186 (362)
T ss_pred             CeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccce--eecc-C------CcceeeEEcCCCCEEEEE
Confidence            999999999999999999999999999999999999999998876422  2221 1      123569999999999999


Q ss_pred             ecCeEEEEEccCcceeeeeccCCCCcceeEEEEcCCCceEEEeecCCcEEEEecCCceeeeeeCCCeecCCCCCCCCcee
Q 001415          939 HETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHP 1018 (1082)
Q Consensus       939 ~d~~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~dg~~l~t~s~dg~v~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~ 1018 (1082)
                      ..+.|-+|.+.+.........   ...+.++.|- ++..|++|.+|+.|.+||.+++...+.+.       +|.+. |. 
T Consensus       187 ~~~~i~i~q~d~A~v~~~i~~---~~r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds~~~~~~~~-------AH~~R-VK-  253 (362)
T KOG0294|consen  187 GRNKIDIYQLDNASVFREIEN---PKRILCATFL-DGSELLVGGDNEWISLKDTDSDTPLTEFL-------AHENR-VK-  253 (362)
T ss_pred             eccEEEEEecccHhHhhhhhc---cccceeeeec-CCceEEEecCCceEEEeccCCCccceeee-------cchhh-ee-
Confidence            899999999988887766653   3457777775 56788999999999999999988888777       54232 44 


Q ss_pred             eEEE-EeCCCCCeEEEEecCCcEEEEccCCCC
Q 001415         1019 LVIA-AHPQEPNEFALGLSDGGVHVFEPLESE 1049 (1082)
Q Consensus      1019 ~~~~-~~~~d~~~l~s~~~dg~v~vW~~~~~~ 1049 (1082)
                       .+. |...++.+|+++++||.|+|||+....
T Consensus       254 -~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~~  284 (362)
T KOG0294|consen  254 -DIASYTNPEHEYLVTASSDGFIKVWDIDMET  284 (362)
T ss_pred             -eeEEEecCCceEEEEeccCceEEEEEccccc
Confidence             444 333367899999999999999999874

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.93  E-value=6.3e-25  Score=235.16  Aligned_cols=254  Identities=16%  Similarity=0.279  Sum_probs=213.9

Q ss_pred             CCCcceeeecC-CCCCceEEEEecCCCeEEEEEcCCCcEEEEEccccceeeeeceeeeccCCCCcccccccccC-CCCce
Q 001415          346 DLPKTVTRTLN-QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKD-PGVSV  423 (1082)
Q Consensus       346 ~~~~~~~~~~~-h~~~v~~~~~spdg~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~-h~~~V  423 (1082)
                      .....+..+.. +.+.|+++.|+++|++ ||+|..+|.|.|||..+.+.+..                   +.+ |...|
T Consensus       204 ~~s~~v~~l~~~~~~~vtSv~ws~~G~~-LavG~~~g~v~iwD~~~~k~~~~-------------------~~~~h~~rv  263 (484)
T KOG0305|consen  204 ASSGSVTELCSFGEELVTSVKWSPDGSH-LAVGTSDGTVQIWDVKEQKKTRT-------------------LRGSHASRV  263 (484)
T ss_pred             cCCCceEEeEecCCCceEEEEECCCCCE-EEEeecCCeEEEEehhhcccccc-------------------ccCCcCcee
Confidence            33444444444 4899999999999995 99999999999999988877764                   555 99999


Q ss_pred             eEEEEecCCCeEEEEeCCCeEEEEEccCCceeeEEEEeeccccCeeEEEecCCCCceEEEEEeCCCcEEEEEccCCceeE
Q 001415          424 NRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQY  503 (1082)
Q Consensus       424 ~~l~~spdg~~las~~~d~~v~iwd~~~~~~~~~~~~~~~h~~~V~~l~fs~dg~~~~l~s~s~d~~i~vwd~~~~~~~~  503 (1082)
                      .+++|+  +..+.+|+.++.|..+|+...+....  .+.+|...|..+.|++|+.  ++|+|+.|+.+.|||..+..++.
T Consensus       264 g~laW~--~~~lssGsr~~~I~~~dvR~~~~~~~--~~~~H~qeVCgLkws~d~~--~lASGgnDN~~~Iwd~~~~~p~~  337 (484)
T KOG0305|consen  264 GSLAWN--SSVLSSGSRDGKILNHDVRISQHVVS--TLQGHRQEVCGLKWSPDGN--QLASGGNDNVVFIWDGLSPEPKF  337 (484)
T ss_pred             EEEecc--CceEEEecCCCcEEEEEEecchhhhh--hhhcccceeeeeEECCCCC--eeccCCCccceEeccCCCccccE
Confidence            999998  77899999999999999998876553  3889999999999999999  89999999999999998889999


Q ss_pred             EeecCCcCeEEEeeeecCCceEEEEec--CCCcEEEEecCCCCceeeecCCCCceEEEEEccCCCeeeecccccceeEEE
Q 001415          504 IFEGHEAPVYSVCPHHKENIQFIFSTA--LDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQ  581 (1082)
Q Consensus       504 ~~~~h~~~v~~~~~~~~~~~~~l~s~~--~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~i~~~~  581 (1082)
                      .+..|.+.|.+++|+|-.. .+||+|+  .|++|++||..++..+.... .+..|.++.|++..+               
T Consensus       338 ~~~~H~aAVKA~awcP~q~-~lLAsGGGs~D~~i~fwn~~~g~~i~~vd-tgsQVcsL~Wsk~~k---------------  400 (484)
T KOG0305|consen  338 TFTEHTAAVKALAWCPWQS-GLLATGGGSADRCIKFWNTNTGARIDSVD-TGSQVCSLIWSKKYK---------------  400 (484)
T ss_pred             EEeccceeeeEeeeCCCcc-CceEEcCCCcccEEEEEEcCCCcEecccc-cCCceeeEEEcCCCC---------------
Confidence            9999999999999998776 4888886  49999999998655544332 344566666666554               


Q ss_pred             ecCCCCEEEE--EeCCCeEEEEECCCcceEEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEecCC
Q 001415          582 FDTTKNRFLA--AGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG  650 (1082)
Q Consensus       582 ~~~~~~~l~~--~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~iwd~~~~  650 (1082)
                            .+++  |..++.|.||+..+.+.+..+.+|..  .|..++++|||..+++|+.|.++++|++-+.
T Consensus       401 ------Ei~sthG~s~n~i~lw~~ps~~~~~~l~gH~~--RVl~la~SPdg~~i~t~a~DETlrfw~~f~~  463 (484)
T KOG0305|consen  401 ------ELLSTHGYSENQITLWKYPSMKLVAELLGHTS--RVLYLALSPDGETIVTGAADETLRFWNLFDE  463 (484)
T ss_pred             ------EEEEecCCCCCcEEEEeccccceeeeecCCcc--eeEEEEECCCCCEEEEecccCcEEeccccCC
Confidence                  4554  44678999999999999999988776  7999999999999999999999999998664

>PTZ00420 coronin; Provisional

Probab=99.93  E-value=7.6e-24  Score=237.85  Aligned_cols=235  Identities=14%  Similarity=0.199  Sum_probs=179.8

Q ss_pred             EcCCCcEEEEEccccceeeeeceeeeccCCCCcccccccccCCCCceeEEEEecC-CCeEEEEeCCCeEEEEEccCCce-
Q 001415          377 GTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPD-GSLFGVAYSRHIVQIYSYHGGDE-  454 (1082)
Q Consensus       377 gs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spd-g~~las~~~d~~v~iwd~~~~~~-  454 (1082)
                      |+.++.|.+|+......+.                   .+.+|.+.|.+++|+|+ +.+||+|+.|++|+|||+.++.. 
T Consensus        50 GG~~gvI~L~~~~r~~~v~-------------------~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~  110 (568)
T PTZ00420         50 GGLIGAIRLENQMRKPPVI-------------------KLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDES  110 (568)
T ss_pred             CCceeEEEeeecCCCceEE-------------------EEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCcc
Confidence            4556777777765543332                   37899999999999996 89999999999999999986432 


Q ss_pred             e----eEEEEeeccccCeeEEEecCCCCceEEEEEeCCCcEEEEEccCCceeEEeecCCcCeEEEeeeecCCceEEEEec
Q 001415          455 V----RQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTA  530 (1082)
Q Consensus       455 ~----~~~~~~~~h~~~V~~l~fs~dg~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~  530 (1082)
                      .    .....+.+|...|.+++|+|++.. ++++++.|++|+|||+.+++.+..+. |...|.+++|+++  |.+|++++
T Consensus       111 ~~~i~~p~~~L~gH~~~V~sVaf~P~g~~-iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~Slswspd--G~lLat~s  186 (568)
T PTZ00420        111 VKEIKDPQCILKGHKKKISIIDWNPMNYY-IMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIK--GNLLSGTC  186 (568)
T ss_pred             ccccccceEEeecCCCcEEEEEECCCCCe-EEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCC--CCEEEEEe
Confidence            1    122357899999999999999885 56899999999999999999888776 6678999998765  47899999


Q ss_pred             CCCcEEEEecCCCCceeeecCCCCceEEEEEccCCCeeeecccccceeEEEecCCCCEEEEEeCCC----eEEEEECCC-
Q 001415          531 LDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDF----SIKFWDMDS-  605 (1082)
Q Consensus       531 ~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg----~i~iwd~~~-  605 (1082)
                      .|+.|++||++++.....+..|.+.+....                +....|++++.++++++.|+    .|++||++. 
T Consensus       187 ~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~----------------v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~  250 (568)
T PTZ00420        187 VGKHMHIIDPRKQEIASSFHIHDGGKNTKN----------------IWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNT  250 (568)
T ss_pred             cCCEEEEEECCCCcEEEEEecccCCceeEE----------------EEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCC
Confidence            999999999998777766666655433222                12223456667888887664    799999984 


Q ss_pred             cceEEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEecCC
Q 001415          606 VQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG  650 (1082)
Q Consensus       606 ~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~iwd~~~~  650 (1082)
                      ++++..+..+.....+......++|.++++|..|+.|++|++..+
T Consensus       251 ~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~  295 (568)
T PTZ00420        251 TSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGNCRYYQHSLG  295 (568)
T ss_pred             CCceEEEEecCCccceEEeeeCCCCCEEEEEECCCeEEEEEccCC
Confidence            667766655554333333444557899999999999999999766

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.93  E-value=3.2e-24  Score=205.74  Aligned_cols=288  Identities=17%  Similarity=0.220  Sum_probs=211.3

Q ss_pred             ccCCCCceeEEEEec-CCCeEEEEeCCCeEEEEEccCCceeeEEEEeeccccCeeEEEecCCCCceEEEEEeCCCcEEEE
Q 001415          416 VKDPGVSVNRVIWSP-DGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVW  494 (1082)
Q Consensus       416 ~~~h~~~V~~l~~sp-dg~~las~~~d~~v~iwd~~~~~~~~~~~~~~~h~~~V~~l~fs~dg~~~~l~s~s~d~~i~vw  494 (1082)
                      -....+.|.+|+||| ...+++.++-|++||+|+++....... .....|.++|.+++|+.||.  .+++|+.|+.+++|
T Consensus        23 ~~pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~-ka~~~~~~PvL~v~Wsddgs--kVf~g~~Dk~~k~w   99 (347)
T KOG0647|consen   23 PNPPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVP-KAQQSHDGPVLDVCWSDDGS--KVFSGGCDKQAKLW   99 (347)
T ss_pred             CCCcccchheeEeccccCceEEecccCCceEEEEEecCCcccc-hhhhccCCCeEEEEEccCCc--eEEeeccCCceEEE
Confidence            445678999999999 666777899999999999987422222 24667999999999999998  69999999999999


Q ss_pred             EccCCceeEEeecCCcCeEEEeeeecCCceEEEEecCCCcEEEEecCCCCceeeecCCCCceEEEEEccCCCeeeecccc
Q 001415          495 DATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRK  574 (1082)
Q Consensus       495 d~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~  574 (1082)
                      |+.++ .+..+..|.++|..+.|.+...-..|++|+.|++|+.||.+...++.++..++. +.++.              
T Consensus       100 DL~S~-Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeR-vYa~D--------------  163 (347)
T KOG0647|consen  100 DLASG-QVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPER-VYAAD--------------  163 (347)
T ss_pred             EccCC-CeeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccce-eeehh--------------
Confidence            99999 456677799999999998877667899999999999999998777766655432 22111              


Q ss_pred             cceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEecCCcc-c
Q 001415          575 RSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIR-L  653 (1082)
Q Consensus       575 ~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~iwd~~~~~~-~  653 (1082)
                               -....++++..++.|.+|+++.+..........-.-.+++++...|....+.|+-+|.+.|..+..+.. .
T Consensus       164 ---------v~~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~  234 (347)
T KOG0647|consen  164 ---------VLYPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKD  234 (347)
T ss_pred             ---------ccCceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccC
Confidence                     112257788889999999997654332221111112478999999888889999999999988876522 1


Q ss_pred             eeecccccccccccccccCCCCccccCCCCceeeeccCCceeEEEecccCCCCccccccccCcccccceeEEEEccCCce
Q 001415          654 LRTFENLAYDASRTSENSKNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNA  733 (1082)
Q Consensus       654 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~  733 (1082)
                      --.++.|.....                        .++                         .--.|.+++|+|.-..
T Consensus       235 nFtFkCHR~~~~------------------------~~~-------------------------~VYaVNsi~FhP~hgt  265 (347)
T KOG0647|consen  235 NFTFKCHRSTNS------------------------VND-------------------------DVYAVNSIAFHPVHGT  265 (347)
T ss_pred             ceeEEEeccCCC------------------------CCC-------------------------ceEEecceEeecccce
Confidence            111222211100                        000                         1235778999999999


Q ss_pred             eeecccCCeEEEeeccccccCCCCCcccccCccccCCCCcceeecccCCCCCCCCccEEEeecCCCeEEEee
Q 001415          734 ILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS  805 (1082)
Q Consensus       734 l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~l~~~s  805 (1082)
                      |++++.||+..+||-+....                     +    .....|..+|++.+|+.+|.++|.+.
T Consensus       266 lvTaGsDGtf~FWDkdar~k---------------------L----k~s~~~~qpItcc~fn~~G~ifaYA~  312 (347)
T KOG0647|consen  266 LVTAGSDGTFSFWDKDARTK---------------------L----KTSETHPQPITCCSFNRNGSIFAYAL  312 (347)
T ss_pred             EEEecCCceEEEecchhhhh---------------------h----hccCcCCCccceeEecCCCCEEEEEe
Confidence            99999999999998653221                     0    01123889999999999999998774

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.93  E-value=1.5e-24  Score=230.72  Aligned_cols=238  Identities=17%  Similarity=0.291  Sum_probs=204.7

Q ss_pred             ecCCCCCceEEEEecCCCeEEEEEcCCCcEEEEEccccceeeeeceeeeccCCCCcccccccccCCCCceeE-EEEec-C
Q 001415          354 TLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNR-VIWSP-D  431 (1082)
Q Consensus       354 ~~~h~~~v~~~~~spdg~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~-l~~sp-d  431 (1082)
                      +.+|+..|..+++.+...  ++++|.||++++|+-..++.+...                 .+.+|.+-|.+ +++-+ |
T Consensus        10 l~gH~~DVr~v~~~~~~~--i~s~sRd~t~~vw~~~~~~~l~~~-----------------~~~~~~g~i~~~i~y~e~~   70 (745)
T KOG0301|consen   10 LEGHKSDVRAVAVTDGVC--IISGSRDGTVKVWAKKGKQYLETH-----------------AFEGPKGFIANSICYAESD   70 (745)
T ss_pred             eccCccchheeEecCCeE--EeecCCCCceeeeeccCcccccce-----------------ecccCcceeeccceecccc
Confidence            445999999999888874  889999999999998766655432                 35678888888 88886 6


Q ss_pred             CCeEEEEeCCCeEEEEEccCCceeeEEEEeeccccCeeEEEecCCCCceEEEEEeCCCcEEEEEccCCceeEEeecCCcC
Q 001415          432 GSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAP  511 (1082)
Q Consensus       432 g~~las~~~d~~v~iwd~~~~~~~~~~~~~~~h~~~V~~l~fs~dg~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~  511 (1082)
                      +-.|.+|+.|.+|.+|...+...+.   .+.||...|.+++...++.   ++|||.|.++++|-  .+++...+.+|...
T Consensus        71 ~~~l~~g~~D~~i~v~~~~~~~P~~---~LkgH~snVC~ls~~~~~~---~iSgSWD~TakvW~--~~~l~~~l~gH~as  142 (745)
T KOG0301|consen   71 KGRLVVGGMDTTIIVFKLSQAEPLY---TLKGHKSNVCSLSIGEDGT---LISGSWDSTAKVWR--IGELVYSLQGHTAS  142 (745)
T ss_pred             CcceEeecccceEEEEecCCCCchh---hhhccccceeeeecCCcCc---eEecccccceEEec--chhhhcccCCcchh
Confidence            6679999999999999999988666   8999999999999877775   89999999999995  56777889999999


Q ss_pred             eEEEeeeecCCceEEEEecCCCcEEEEecCCCCceeeecCCCCceEEEEEccCCCeeeecccccceeEEEecCCCCEEEE
Q 001415          512 VYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLA  591 (1082)
Q Consensus       512 v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~i~~~~~~~~~~~l~~  591 (1082)
                      |+++...+..   .+++|+.|++|++|.-  ++...++.+|.+.|+.+++-+++.                      |++
T Consensus       143 VWAv~~l~e~---~~vTgsaDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~~~~----------------------flS  195 (745)
T KOG0301|consen  143 VWAVASLPEN---TYVTGSADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLDDSH----------------------FLS  195 (745)
T ss_pred             eeeeeecCCC---cEEeccCcceeeeccC--CchhhhhccchhheeeeEEecCCC----------------------eEe
Confidence            9999876543   7999999999999965  567778899999999999988875                      999


Q ss_pred             EeCCCeEEEEECCCcceEEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEec
Q 001415          592 AGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATS  648 (1082)
Q Consensus       592 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~iwd~~  648 (1082)
                      ++.||.|+.|++ +|+++..+.+|..  .+.+++...++..++++++|++++||+..
T Consensus       196 csNDg~Ir~w~~-~ge~l~~~~ghtn--~vYsis~~~~~~~Ivs~gEDrtlriW~~~  249 (745)
T KOG0301|consen  196 CSNDGSIRLWDL-DGEVLLEMHGHTN--FVYSISMALSDGLIVSTGEDRTLRIWKKD  249 (745)
T ss_pred             ecCCceEEEEec-cCceeeeeeccce--EEEEEEecCCCCeEEEecCCceEEEeecC
Confidence            999999999998 7888888877665  68899988888999999999999999865

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.93  E-value=2.9e-25  Score=234.02  Aligned_cols=373  Identities=16%  Similarity=0.174  Sum_probs=259.9

Q ss_pred             CCCcee---EEEEec-CCCeEEEEeCCCeEEEEEccCCcee---eEEEEeeccccCeeEEEecCCCCceEEEEEeCCCcE
Q 001415          419 PGVSVN---RVIWSP-DGSLFGVAYSRHIVQIYSYHGGDEV---RQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTI  491 (1082)
Q Consensus       419 h~~~V~---~l~~sp-dg~~las~~~d~~v~iwd~~~~~~~---~~~~~~~~h~~~V~~l~fs~dg~~~~l~s~s~d~~i  491 (1082)
                      |...|.   .+..++ .++||.+|+.||.|++|++......   .....++.|.+.|+.++...+|+  .|+|+|.|-+|
T Consensus        20 n~~~v~~~~~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~--tlIS~SsDtTV   97 (735)
T KOG0308|consen   20 NRNGVNITKALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGK--TLISASSDTTV   97 (735)
T ss_pred             ccccccchhhccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCC--ceEEecCCceE
Confidence            444444   444444 6778999999999999998754321   12346889999999999999998  69999999999


Q ss_pred             EEEEccCC--ceeEEeecCCcCeEEEeeeecCCceEEEEecCCCcEEEEecCCCCceeeecCCCCceEEEEEccCCCeee
Q 001415          492 KVWDATNG--AKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTY  569 (1082)
Q Consensus       492 ~vwd~~~~--~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~  569 (1082)
                      ++|+...+  -++.++..|.+-|.+++.- ..+..++++||.|+.|.+||+.++............+.++..        
T Consensus        98 K~W~~~~~~~~c~stir~H~DYVkcla~~-ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~s--------  168 (735)
T KOG0308|consen   98 KVWNAHKDNTFCMSTIRTHKDYVKCLAYI-AKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGS--------  168 (735)
T ss_pred             EEeecccCcchhHhhhhcccchheeeeec-ccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCC--------
Confidence            99999887  6788899999999999973 344479999999999999999976542221111111111111        


Q ss_pred             ecccccceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEecC
Q 001415          570 QGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSD  649 (1082)
Q Consensus       570 ~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~iwd~~~  649 (1082)
                        .....+.+++.++.+..+++|+..+.|++||.++++.+..+.+|..  .|..+..++||..+++++.||+|++||+..
T Consensus       169 --G~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~kimkLrGHTd--NVr~ll~~dDGt~~ls~sSDgtIrlWdLgq  244 (735)
T KOG0308|consen  169 --GPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTD--NVRVLLVNDDGTRLLSASSDGTIRLWDLGQ  244 (735)
T ss_pred             --CCccceeeeecCCcceEEEecCcccceEEeccccccceeeeecccc--ceEEEEEcCCCCeEeecCCCceEEeeeccc
Confidence              1233677888888888899999999999999999988888876654  577777777777777777777777666532


Q ss_pred             CccceeecccccccccccccccCCCCccccCCCCceeeeccCCceeEEEecccCCCCccccccccCcccccceeEEEEcc
Q 001415          650 GIRLLRTFENLAYDASRTSENSKNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTN  729 (1082)
Q Consensus       650 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~  729 (1082)
                                                                                                      
T Consensus       245 --------------------------------------------------------------------------------  244 (735)
T KOG0308|consen  245 --------------------------------------------------------------------------------  244 (735)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCceeeecccCCeEEEeeccccccCCCCCcccccCccccCCCCcceeecccCCCCCCCCccEEEeecCCCeEEEeeCCeE
Q 001415          730 SGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGKI  809 (1082)
Q Consensus       730 ~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~l~~~sdg~i  809 (1082)
                                                                                                      
T Consensus       245 --------------------------------------------------------------------------------  244 (735)
T KOG0308|consen  245 --------------------------------------------------------------------------------  244 (735)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             EEEecCCCeeEEEECCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEecccc-eeeeeecccccCEEEEEEeCCCCEEEEE
Q 001415          810 SLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVD-EVKSKLKGHSKRITGLAFSHALNVLVSS  888 (1082)
Q Consensus       810 ~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~-~~~~~l~~h~~~V~~l~~s~d~~~l~s~  888 (1082)
                             .+++.++..|...|.++..+| +-..+.+|+.||.|..=|+.+. ++...++ ...+|..+..+.+.+-+-++
T Consensus       245 -------QrCl~T~~vH~e~VWaL~~~~-sf~~vYsG~rd~~i~~Tdl~n~~~~tlick-~daPv~~l~~~~~~~~~Wvt  315 (735)
T KOG0308|consen  245 -------QRCLATYIVHKEGVWALQSSP-SFTHVYSGGRDGNIYRTDLRNPAKSTLICK-EDAPVLKLHLHEHDNSVWVT  315 (735)
T ss_pred             -------cceeeeEEeccCceEEEeeCC-CcceEEecCCCCcEEecccCCchhheEeec-CCCchhhhhhccccCCceee
Confidence                   233333334444555566666 6677888888888888888774 3322232 44566677766444444667


Q ss_pred             eCCCcEEEEEcCCcccccceeeeccCCCCCCCCCCcEEEEcCCCcEEEEEecCeEEEEEccCcceeeeeccCCCCcceeE
Q 001415          889 GADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPRESSAPITH  968 (1082)
Q Consensus       889 s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~i~~  968 (1082)
                      +.|+.|+-|....                       ...+++.|++...+.+....+++... ......  +| ..+|..
T Consensus       316 Ttds~I~rW~~~~-----------------------~~~l~~s~~~~~~~T~~~~~~~~~~~-tp~~vi--~G-g~ai~k  368 (735)
T KOG0308|consen  316 TTDSSIKRWKLEP-----------------------DIALSVSGDLDFFSTDSNNHSCDLTN-TPDSVI--PG-GAAIKK  368 (735)
T ss_pred             eccccceecCCcc-----------------------ccccccCCCCCcccccCCCccccccC-CCceec--cC-chhhhh
Confidence            7899999997654                       22445556555555555555554321 111111  12 345666


Q ss_pred             EEEcCCCceEEEeecCCcEEEEecCCceeeeeeC
Q 001415          969 ATFSCDSQLVYACFLDATVCVFSAANLKLRCRIN 1002 (1082)
Q Consensus       969 l~~s~dg~~l~t~s~dg~v~vwd~~~~~~~~~~~ 1002 (1082)
                      -++-.|.++++|-...|.+.+||+-..+.+..+.
T Consensus       369 ~~mL~dkRhVlTkDa~gnv~lwDIl~~~~~~d~g  402 (735)
T KOG0308|consen  369 HAMLNDKRHVLTKDAKGNVALWDILACVKVEDFG  402 (735)
T ss_pred             hhhhcCcceEeeecCCCCEEEEEeeeeeehhhcc
Confidence            6777899999999999999999998877765554

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.93  E-value=8.6e-24  Score=212.37  Aligned_cols=279  Identities=17%  Similarity=0.294  Sum_probs=222.7

Q ss_pred             CcCeEEEcCCCCEEEEEECCCcEEEEEecCCccceeecccccccccccccccCCCCccccCCCCceeeeccCCceeEEEe
Q 001415          620 ASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKNGDVRSLADVKPRITEESNDKSKVWKL  699 (1082)
Q Consensus       620 ~i~~~~~s~dg~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~iw~~  699 (1082)
                      .+.++...|....+.+|+.|..+.++|...+ +.+..+.+                                        
T Consensus       221 gi~ald~~~s~~~ilTGG~d~~av~~d~~s~-q~l~~~~G----------------------------------------  259 (506)
T KOG0289|consen  221 GITALDIIPSSSKILTGGEDKTAVLFDKPSN-QILATLKG----------------------------------------  259 (506)
T ss_pred             CeeEEeecCCCCcceecCCCCceEEEecchh-hhhhhccC----------------------------------------
Confidence            4667777777678889999988888887665 34333333                                        


Q ss_pred             cccCCCCccccccccCcccccceeEEEEccCCceeeecccCCeEEEeeccccccCCCCCcccccCccccCCCCcceeecc
Q 001415          700 TELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTND  779 (1082)
Q Consensus       700 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  779 (1082)
                                        |...|..+.++++...+++++.|..|++|.......                   ...    
T Consensus       260 ------------------h~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~-------------------~~~----  298 (506)
T KOG0289|consen  260 ------------------HTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSE-------------------PTS----  298 (506)
T ss_pred             ------------------cceEEEEEEeccchhheeecCCcceEEeeccccccC-------------------ccc----
Confidence                              667788899999999999999999999996542210                   000    


Q ss_pred             cCCCCCCCCccEEEeecCCCeEEEee-CCeEEEEecCCCeeEEEECC--CCCCeeEEEEecCCCcEEEEEeCCCcEEEEe
Q 001415          780 VTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMP--PPPAATFLAFHPQDNNIIAIGMDDSSIQIYN  856 (1082)
Q Consensus       780 ~~~~~~~~~i~~l~~s~dg~~l~~~s-dg~i~iwd~~~~~~~~~~~~--~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd  856 (1082)
                        ...|..+|+.+..+|.|.|+++++ |+...+.|++++.++.....  ..-.+++.+|+| ||.++++|..||.|+|||
T Consensus       299 --~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHp-DgLifgtgt~d~~vkiwd  375 (506)
T KOG0289|consen  299 --SRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHP-DGLIFGTGTPDGVVKIWD  375 (506)
T ss_pred             --cccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcC-CceEEeccCCCceEEEEE
Confidence              112899999999999999999998 58899999999998877654  334589999999 999999999999999999


Q ss_pred             cccceeeeeecccccCEEEEEEeCCCCEEEEEeCCCcEEEEEcCCcccccceeeeccCCCCCCCCCCcEEEEcCCCcEEE
Q 001415          857 VRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFL  936 (1082)
Q Consensus       857 ~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~  936 (1082)
                      +.++..+..|.+|+++|..++|+.+|-|||+++.|+.|++||++.-+..+  .+.....     ..+.++.|.+.|++|+
T Consensus       376 lks~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~k--t~~l~~~-----~~v~s~~fD~SGt~L~  448 (506)
T KOG0289|consen  376 LKSQTNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFK--TIQLDEK-----KEVNSLSFDQSGTYLG  448 (506)
T ss_pred             cCCccccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccc--eeecccc-----ccceeEEEcCCCCeEE
Confidence            99999999999999999999999999999999999999999998744222  2222221     3578999999999999


Q ss_pred             EE-ecCeEEEEEccC--cceeeeeccCCCCcceeEEEEcCCCceEEEeecCCcEEEEec
Q 001415          937 VV-HETQLAIFETTK--LECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSA  992 (1082)
Q Consensus       937 ~~-~d~~i~iwd~~~--~~~~~~~~~~~h~~~i~~l~~s~dg~~l~t~s~dg~v~vwd~  992 (1082)
                      ++ .+-+|++++-.+  .+++..+  ..|.+..+.+.|..+.+++++++.|..++++.+
T Consensus       449 ~~g~~l~Vy~~~k~~k~W~~~~~~--~~~sg~st~v~Fg~~aq~l~s~smd~~l~~~a~  505 (506)
T KOG0289|consen  449 IAGSDLQVYICKKKTKSWTEIKEL--ADHSGLSTGVRFGEHAQYLASTSMDAILRLYAL  505 (506)
T ss_pred             eecceeEEEEEecccccceeeehh--hhcccccceeeecccceEEeeccchhheEEeec
Confidence            95 455566665443  3444444  377889999999999999999999999888764

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.93  E-value=1.6e-24  Score=220.41  Aligned_cols=270  Identities=14%  Similarity=0.229  Sum_probs=218.1

Q ss_pred             cceeeecCCCCCceEEEEecCCCeEEEEEcCCCcEEEEEccccceeeeeceeeeccCCCCcccccccccCCCCceeEEEE
Q 001415          349 KTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIW  428 (1082)
Q Consensus       349 ~~~~~~~~h~~~v~~~~~spdg~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~  428 (1082)
                      .++...+.|.++|+.+.+-|....++|+++..+.|.|||+.+-.-....         .+.-.+...+.+|...=+.|+|
T Consensus       115 v~i~~~i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~---------~~~~~Pdl~L~gH~~eg~glsW  185 (422)
T KOG0264|consen  115 VEISQKINHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKA---------SGECRPDLRLKGHEKEGYGLSW  185 (422)
T ss_pred             eEEEEeccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccc---------cccCCCceEEEeeccccccccc
Confidence            3455678899999999999999999999999999999999764333210         0011122248899998899999


Q ss_pred             ec-CCCeEEEEeCCCeEEEEEccCCce----eeEEEEeeccccCeeEEEecCCCCceEEEEEeCCCcEEEEEcc--CCce
Q 001415          429 SP-DGSLFGVAYSRHIVQIYSYHGGDE----VRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDAT--NGAK  501 (1082)
Q Consensus       429 sp-dg~~las~~~d~~v~iwd~~~~~~----~~~~~~~~~h~~~V~~l~fs~dg~~~~l~s~s~d~~i~vwd~~--~~~~  501 (1082)
                      ++ ..-+|++++.|++|++||+.....    +.....+.+|...|..++|++-... ++++++.|+.+.|||++  +.++
T Consensus       186 n~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~-lF~sv~dd~~L~iwD~R~~~~~~  264 (422)
T KOG0264|consen  186 NRQQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHED-LFGSVGDDGKLMIWDTRSNTSKP  264 (422)
T ss_pred             ccccceeEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchh-hheeecCCCeEEEEEcCCCCCCC
Confidence            99 556899999999999999985433    5556678999999999999998777 79999999999999999  5667


Q ss_pred             eEEeecCCcCeEEEeeeecCCceEEEEecCCCcEEEEecCCCCc-eeeecCCCCceEEEEEccCCCeeeecccccceeEE
Q 001415          502 QYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGS-RVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVV  580 (1082)
Q Consensus       502 ~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~-~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~i~~~  580 (1082)
                      .+...+|.+.|.+++|+|..+ ..||+|+.|++|++||+++... ...+..|...|..+.|+|...              
T Consensus       265 ~~~~~ah~~~vn~~~fnp~~~-~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~e--------------  329 (422)
T KOG0264|consen  265 SHSVKAHSAEVNCVAFNPFNE-FILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNE--------------  329 (422)
T ss_pred             cccccccCCceeEEEeCCCCC-ceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCC--------------
Confidence            778889999999999998764 7999999999999999998665 458888889999999998865              


Q ss_pred             EecCCCCEEEEEeCCCeEEEEECCCcce------------EEEEecCCCCCCcCeEEEcCCCCE-EEEEECCCcEEEEEe
Q 001415          581 QFDTTKNRFLAAGDDFSIKFWDMDSVQL------------LTSIDADGGLPASPRIRFNKDGCL-LAVSTNDNGIKILAT  647 (1082)
Q Consensus       581 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~------------~~~~~~~~~~~~i~~~~~s~dg~~-l~~~~~dg~i~iwd~  647 (1082)
                            ..|++++.|+.+.+||+..-..            --.+...+|...|..+.|+|+..+ +++.+.|+.+.||.+
T Consensus       330 ------tvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~  403 (422)
T KOG0264|consen  330 ------TVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQM  403 (422)
T ss_pred             ------ceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeec
Confidence                  3588899999999999864211            122444456668999999997655 667889999999987


Q ss_pred             cC
Q 001415          648 SD  649 (1082)
Q Consensus       648 ~~  649 (1082)
                      ..
T Consensus       404 s~  405 (422)
T KOG0264|consen  404 AE  405 (422)
T ss_pred             cc
Confidence            63

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.93  E-value=4.1e-25  Score=216.79  Aligned_cols=283  Identities=14%  Similarity=0.195  Sum_probs=226.5

Q ss_pred             ccCCCCceeEEEEecCC-CeEEEEeCCCeEEEEEccCCceeeEEEEeeccccCeeEEEecCCCCceEEEEEeCCCcEEEE
Q 001415          416 VKDPGVSVNRVIWSPDG-SLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVW  494 (1082)
Q Consensus       416 ~~~h~~~V~~l~~spdg-~~las~~~d~~v~iwd~~~~~~~~~~~~~~~h~~~V~~l~fs~dg~~~~l~s~s~d~~i~vw  494 (1082)
                      +.||.+.|.|+|=.|.. ..+|+|+.||.|+|||+....+..   ++..|.+.|..+++.. +   .+++++.|.+|+.|
T Consensus        62 L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~---~f~AH~G~V~Gi~v~~-~---~~~tvgdDKtvK~w  134 (433)
T KOG0268|consen   62 LDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIR---TFKAHEGLVRGICVTQ-T---SFFTVGDDKTVKQW  134 (433)
T ss_pred             ccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhh---eeecccCceeeEEecc-c---ceEEecCCcceeee
Confidence            68999999999999977 889999999999999999988777   7999999999999987 3   48999999999999


Q ss_pred             EccCCceeEEeecCCcCeEEEeeeecCCceEEEEecCCCcEEEEecCCCCceeeecCCCCceEEEEEccCCCeeeecccc
Q 001415          495 DATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRK  574 (1082)
Q Consensus       495 d~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~  574 (1082)
                      .+.- .+++++.+ ...+..+.-+...  ..+++||.  .|-|||.....+...+.-....+.++.|+|-..        
T Consensus       135 k~~~-~p~~tilg-~s~~~gIdh~~~~--~~FaTcGe--~i~IWD~~R~~Pv~smswG~Dti~svkfNpvET--------  200 (433)
T KOG0268|consen  135 KIDG-PPLHTILG-KSVYLGIDHHRKN--SVFATCGE--QIDIWDEQRDNPVSSMSWGADSISSVKFNPVET--------  200 (433)
T ss_pred             eccC-Ccceeeec-ccccccccccccc--ccccccCc--eeeecccccCCccceeecCCCceeEEecCCCcc--------
Confidence            9765 46677664 3445555433322  57888775  489999986555555544444444444444433        


Q ss_pred             cceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEecCCccce
Q 001415          575 RSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLL  654 (1082)
Q Consensus       575 ~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~iwd~~~~~~~~  654 (1082)
                                  ..|++++.|+.|.+||++++.++..+.....   -+.++|+|.+-.+++++.|..++.+|++......
T Consensus       201 ------------sILas~~sDrsIvLyD~R~~~Pl~KVi~~mR---TN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~  265 (433)
T KOG0268|consen  201 ------------SILASCASDRSIVLYDLRQASPLKKVILTMR---TNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPL  265 (433)
T ss_pred             ------------hheeeeccCCceEEEecccCCccceeeeecc---ccceecCccccceeeccccccceehhhhhhcccc
Confidence                        2466677999999999999999887765443   4679999988889999999999999999988888


Q ss_pred             eecccccccccccccccCCCCccccCCCCceeeeccCCceeEEEecccCCCCccccccccCcccccceeEEEEccCCcee
Q 001415          655 RTFENLAYDASRTSENSKNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAI  734 (1082)
Q Consensus       655 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l  734 (1082)
                      ....+|...+.  .+.|       +|.|+.+++|+.|.+|+||....+........-      .-..|.++.||.|.+++
T Consensus       266 ~v~~dhvsAV~--dVdf-------sptG~EfvsgsyDksIRIf~~~~~~SRdiYhtk------RMq~V~~Vk~S~Dskyi  330 (433)
T KOG0268|consen  266 NVHKDHVSAVM--DVDF-------SPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHTK------RMQHVFCVKYSMDSKYI  330 (433)
T ss_pred             hhhcccceeEE--Eecc-------CCCcchhccccccceEEEeecCCCcchhhhhHh------hhheeeEEEEeccccEE
Confidence            88888888777  6777       999999999999999999999875443333222      23568999999999999


Q ss_pred             eecccCCeEEEeecc
Q 001415          735 LALASNAIHLLWKWQ  749 (1082)
Q Consensus       735 ~~~~~d~~i~iw~~~  749 (1082)
                      ++|+.|+.|++|...
T Consensus       331 ~SGSdd~nvRlWka~  345 (433)
T KOG0268|consen  331 ISGSDDGNVRLWKAK  345 (433)
T ss_pred             EecCCCcceeeeecc
Confidence            999999999999654

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.93  E-value=1.9e-22  Score=221.85  Aligned_cols=518  Identities=14%  Similarity=0.199  Sum_probs=323.5

Q ss_pred             EEEEecCCCeEEEEeCCCeEEEEEccCCceeeEEEEeeccccCeeEEEecCCCCc-eEEEEEeCCCcEEEEEccCCceeE
Q 001415          425 RVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQ-LCVITCGDDKTIKVWDATNGAKQY  503 (1082)
Q Consensus       425 ~l~~spdg~~las~~~d~~v~iwd~~~~~~~~~~~~~~~h~~~V~~l~fs~dg~~-~~l~s~s~d~~i~vwd~~~~~~~~  503 (1082)
                      .-.||+|++++.... +..|.||...++.++.   .+.+|..++..+.+.|.... .++++++.||+|++||...+..++
T Consensus        21 ~avfSnD~k~l~~~~-~~~V~VyS~~Tg~~i~---~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~Llk   96 (792)
T KOG1963|consen   21 PAVFSNDAKFLFLCT-GNFVKVYSTATGECIT---SLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGELLK   96 (792)
T ss_pred             ccccccCCcEEEEee-CCEEEEEecchHhhhh---hcccccCccceeeecCCCccceEEEEEecCccEEEecCCCcEEEE
Confidence            347999999998775 4679999999999887   79999999999999887663 478899999999999999999999


Q ss_pred             EeecCCcCeEEEeeeec--CCceEEEEecCCCcE-EEEecCCCCceeeecCCCCceEEEEEccCCCeeeecccccceeEE
Q 001415          504 IFEGHEAPVYSVCPHHK--ENIQFIFSTALDGKI-KAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVV  580 (1082)
Q Consensus       504 ~~~~h~~~v~~~~~~~~--~~~~~l~s~~~dg~i-~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~i~~~  580 (1082)
                      ++..+. ++.++.+.+.  .....+..+..|..+ .....+....       ..+..-..+..--......+.  .-.++
T Consensus        97 t~~~~~-~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q-------~~~~~~~t~~~~~~d~~~~~~--~~~~I  166 (792)
T KOG1963|consen   97 TFDNNL-PVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQ-------SSRFVLATFDSAKGDFLKEHQ--EPKSI  166 (792)
T ss_pred             EEecCC-ceeEEEechhHhCccceeEeecccceeeeecccccccc-------eeeeEeeeccccchhhhhhhc--CCccE
Confidence            987543 3333322110  000111112222111 1010000000       000000000000000000010  12345


Q ss_pred             EecCCCCEEEEEeCCCeEEEEECCCcceEEEE--ecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEecCCccceeecc
Q 001415          581 QFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSI--DADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFE  658 (1082)
Q Consensus       581 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~--~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~iwd~~~~~~~~~~~~  658 (1082)
                      .+++.+.+.... .+..+.+|+..++......  ....|...+++.+++|++++++++..||.|.+|.--..       .
T Consensus       167 ~~~~~ge~~~i~-~~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~-------~  238 (792)
T KOG1963|consen  167 VDNNSGEFKGIV-HMCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGS-------S  238 (792)
T ss_pred             EEcCCceEEEEE-EeeeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEecccc-------c
Confidence            556666544443 4556888888775511111  11122234789999999999999999999999963221       0


Q ss_pred             cccccccccccccCCCCccccCCCCceeeeccCCceeEEEecccCCCCccccccccCcccccceeEEEEccCCceeeecc
Q 001415          659 NLAYDASRTSENSKNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALA  738 (1082)
Q Consensus       659 ~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~  738 (1082)
                                                    ..+-+..+|.              +    |...|.+++|+++|.+|++|+
T Consensus       239 ------------------------------~~~~t~t~lH--------------W----H~~~V~~L~fS~~G~~LlSGG  270 (792)
T KOG1963|consen  239 ------------------------------DDSETCTLLH--------------W----HHDEVNSLSFSSDGAYLLSGG  270 (792)
T ss_pred             ------------------------------cccccceEEE--------------e----cccccceeEEecCCceEeecc
Confidence                                          0001111111              1    788999999999999999999


Q ss_pred             cCCeEEEeeccccccCCCCCcccccCccccCCCCcceeecccCCCCCCCCccEEEeecCCCeEEEee-CCeEEEEecCCC
Q 001415          739 SNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTF  817 (1082)
Q Consensus       739 ~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~l~~~s-dg~i~iwd~~~~  817 (1082)
                      ..+.+.+|.+.++..                       + .++.  -..+|..+.+|||+.+.+... |+.|.+....+.
T Consensus       271 ~E~VLv~Wq~~T~~k-----------------------q-fLPR--Lgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl  324 (792)
T KOG1963|consen  271 REGVLVLWQLETGKK-----------------------Q-FLPR--LGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDL  324 (792)
T ss_pred             cceEEEEEeecCCCc-----------------------c-cccc--cCCeeEEEEEcCCCCeEEEEecCceEEEEeccch
Confidence            999999997653321                       1 1111  578899999999999877764 899999988665


Q ss_pred             eeEEEECCC-----------CCCeeEEEEecCCCcEEEEEeCCCcEEEEecccceeeeeec-----------ccccCEEE
Q 001415          818 KTMATFMPP-----------PPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLK-----------GHSKRITG  875 (1082)
Q Consensus       818 ~~~~~~~~~-----------~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~-----------~h~~~V~~  875 (1082)
                      ....++.+.           .+-.+.++++| ..+.++..+..|.|.+||+.+.+.+..+.           .+.-.+++
T Consensus       325 ~~k~tIsgi~~~~~~~k~~~~~l~t~~~idp-r~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~ita  403 (792)
T KOG1963|consen  325 EIKSTISGIKPPTPSTKTRPQSLTTGVSIDP-RTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITA  403 (792)
T ss_pred             hhhhhccCccCCCccccccccccceeEEEcC-CCCceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeee
Confidence            554444332           23367889999 67778888899999999998876665543           12345788


Q ss_pred             EEEeCCCCEEEEEeC--------CC--cEEEEEcCCcccccceeeeccCCCCCCCCCCcEEEEcCCCc-EEEE-EecCeE
Q 001415          876 LAFSHALNVLVSSGA--------DS--QLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQI-HFLV-VHETQL  943 (1082)
Q Consensus       876 l~~s~d~~~l~s~s~--------Dg--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~-~l~~-~~d~~i  943 (1082)
                      ++.+-.|.+++|+-.        ||  .+++|-.......-.....+...|..  ..+..+.+++... ..++ +.||.+
T Consensus       404 v~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~I~~PH~~--~~vat~~~~~~rs~~~vta~~dg~~  481 (792)
T KOG1963|consen  404 VARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNPNSKTFILNTKINNPHGN--AFVATIFLNPTRSVRCVTASVDGDF  481 (792)
T ss_pred             ehhhccceEEEEeeeeehhhhccCceEEEEEEEEcCCcceeEEEEEEecCCCc--eeEEEEEecCcccceeEEeccCCeE
Confidence            888888999998632        33  47899887755433333333333332  2233333444333 5555 689999


Q ss_pred             EEEEccCcceee----ee----ccCCCCcceeEEEEcCCCceEEEeecCCcEEEEecCC-ceeeeeeCCCeecCCCCCCC
Q 001415          944 AIFETTKLECVK----QW----VPRESSAPITHATFSCDSQLVYACFLDATVCVFSAAN-LKLRCRINPSAYLPAGVSSS 1014 (1082)
Q Consensus       944 ~iwd~~~~~~~~----~~----~~~~h~~~i~~l~~s~dg~~l~t~s~dg~v~vwd~~~-~~~~~~~~~~~~~~~gh~~~ 1014 (1082)
                      +||-....+.+.    .|    ...-|..++++++||.||..|+.+ .|++|.+||..+ .++.+...... .+.+    
T Consensus       482 KiW~~~~~~n~~k~~s~W~c~~i~sy~k~~i~a~~fs~dGslla~s-~~~~Itiwd~~~~~~l~~~~~~~~-~~~~----  555 (792)
T KOG1963|consen  482 KIWVFTDDSNIYKKSSNWTCKAIGSYHKTPITALCFSQDGSLLAVS-FDDTITIWDYDTKNELLCTEGSRN-WPIA----  555 (792)
T ss_pred             EEEEEecccccCcCccceEEeeeeccccCcccchhhcCCCcEEEEe-cCCEEEEecCCChhhhhccccccc-cchH----
Confidence            999884332211    11    112368899999999999877655 689999999999 55554443222 1211    


Q ss_pred             CceeeEEEEeCC-CCCeEEEEecCCcEEEEccCCCCCcc
Q 001415         1015 NVHPLVIAAHPQ-EPNEFALGLSDGGVHVFEPLESEGKW 1052 (1082)
Q Consensus      1015 ~v~~~~~~~~~~-d~~~l~s~~~dg~v~vW~~~~~~~~~ 1052 (1082)
                           ...|..+ .....++....+.+.+|++.+....|
T Consensus       556 -----~~~~~~~~~~~~~~~~~~~~~l~~WNll~~~l~w  589 (792)
T KOG1963|consen  556 -----ELLFTAQTQNDGALVHATQQRLSVWNLLSMSLIW  589 (792)
T ss_pred             -----hHhhhcccccccceeeccCceEehHhhhhhheec
Confidence                 1222211 02234455668899999999988666

>PTZ00420 coronin; Provisional

Probab=99.93  E-value=2.1e-23  Score=234.40  Aligned_cols=242  Identities=14%  Similarity=0.193  Sum_probs=175.7

Q ss_pred             eeeecCCCCCceEEEEecC-CCeEEEEEcCCCcEEEEEccccceeeeeceeeeccCCCCcccccccccCCCCceeEEEEe
Q 001415          351 VTRTLNQGSSPMSMDFHPV-QQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWS  429 (1082)
Q Consensus       351 ~~~~~~h~~~v~~~~~spd-g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s  429 (1082)
                      +..+.+|.+.|++++|+|+ +. +||+|+.||+|+|||+.++......      +   .  .....+.+|...|.+++|+
T Consensus        67 v~~L~gH~~~V~~lafsP~~~~-lLASgS~DgtIrIWDi~t~~~~~~~------i---~--~p~~~L~gH~~~V~sVaf~  134 (568)
T PTZ00420         67 VIKLKGHTSSILDLQFNPCFSE-ILASGSEDLTIRVWEIPHNDESVKE------I---K--DPQCILKGHKKKISIIDWN  134 (568)
T ss_pred             EEEEcCCCCCEEEEEEcCCCCC-EEEEEeCCCeEEEEECCCCCccccc------c---c--cceEEeecCCCcEEEEEEC
Confidence            4456679999999999998 55 6999999999999999865321100      0   0  0011367899999999999


Q ss_pred             cCCCe-EEEEeCCCeEEEEEccCCceeeEEEEeeccccCeeEEEecCCCCceEEEEEeCCCcEEEEEccCCceeEEeecC
Q 001415          430 PDGSL-FGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGH  508 (1082)
Q Consensus       430 pdg~~-las~~~d~~v~iwd~~~~~~~~~~~~~~~h~~~V~~l~fs~dg~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h  508 (1082)
                      |++.. ||+++.|++|+|||+.+++...   .+. |...|.+++|+|+|.  +|++++.|+.|+|||+++++.+..+.+|
T Consensus       135 P~g~~iLaSgS~DgtIrIWDl~tg~~~~---~i~-~~~~V~SlswspdG~--lLat~s~D~~IrIwD~Rsg~~i~tl~gH  208 (568)
T PTZ00420        135 PMNYYIMCSSGFDSFVNIWDIENEKRAF---QIN-MPKKLSSLKWNIKGN--LLSGTCVGKHMHIIDPRKQEIASSFHIH  208 (568)
T ss_pred             CCCCeEEEEEeCCCeEEEEECCCCcEEE---EEe-cCCcEEEEEECCCCC--EEEEEecCCEEEEEECCCCcEEEEEecc
Confidence            99876 5789999999999999987554   343 567899999999999  7899999999999999999999999999


Q ss_pred             CcCeEEEeeee---cCCceEEEEecCCC----cEEEEecCCCCc-eeeecCCCCceEEEEEccCCCeeeecccccceeEE
Q 001415          509 EAPVYSVCPHH---KENIQFIFSTALDG----KIKAWLYDNLGS-RVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVV  580 (1082)
Q Consensus       509 ~~~v~~~~~~~---~~~~~~l~s~~~dg----~i~iwd~~~~~~-~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~i~~~  580 (1082)
                      .+.+.+.++..   .+++.+|++++.|+    .|++||++.... ......... ..                  .+...
T Consensus       209 ~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~-~~------------------~L~p~  269 (568)
T PTZ00420        209 DGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNA-SA------------------PLIPH  269 (568)
T ss_pred             cCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCC-cc------------------ceEEe
Confidence            98765544332   24556888887764    799999986332 222111110 00                  11111


Q ss_pred             EecCCCCEEEEEeCCCeEEEEECCCcceEEEEecCCCCCCcCeEEEcCCC
Q 001415          581 QFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDG  630 (1082)
Q Consensus       581 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~dg  630 (1082)
                      ...+++.++++|+.|+.|++|++..+. +..+.......+..+++|.|+.
T Consensus       270 ~D~~tg~l~lsGkGD~tIr~~e~~~~~-~~~l~~~~s~~p~~g~~f~Pkr  318 (568)
T PTZ00420        270 YDESTGLIYLIGKGDGNCRYYQHSLGS-IRKVNEYKSCSPFRSFGFLPKQ  318 (568)
T ss_pred             eeCCCCCEEEEEECCCeEEEEEccCCc-EEeecccccCCCccceEEcccc
Confidence            113345678899999999999998764 3334433344567889999964

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.93  E-value=5.2e-24  Score=216.12  Aligned_cols=293  Identities=17%  Similarity=0.212  Sum_probs=222.9

Q ss_pred             cccCCCCceeEEEEecCCCeEEEEeCCCeEEEEEccCCceeeEE--------------EEe-eccccCeeEEEecCCCCc
Q 001415          415 LVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQH--------------LEI-DAHVGGVNDIAFSHPNKQ  479 (1082)
Q Consensus       415 ~~~~h~~~V~~l~~spdg~~las~~~d~~v~iwd~~~~~~~~~~--------------~~~-~~h~~~V~~l~fs~dg~~  479 (1082)
                      ....|.-+|.|++++||+++..+++.+++|.=|++.+++..+..              ..- .+|...|.+++.|+||+ 
T Consensus       137 ~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgk-  215 (479)
T KOG0299|consen  137 VIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGK-  215 (479)
T ss_pred             eeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCc-
Confidence            36789999999999999999999999999999999988743110              011 37889999999999999 


Q ss_pred             eEEEEEeCCCcEEEEEccCCceeEEeecCCcCeEEEeeeecCCceEEEEecCCCcEEEEecCCCCceeeecCCCCceEEE
Q 001415          480 LCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTM  559 (1082)
Q Consensus       480 ~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~  559 (1082)
                       ||++|+.|..|.||+.++.+.++.+.+|.+.|.+++|-...  ..+++++.|+.|++|+++......++-+|...|..+
T Consensus       216 -ylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt--~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v~~I  292 (479)
T KOG0299|consen  216 -YLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGT--SELYSASADRSVKVWSIDQLSYVETLYGHQDGVLGI  292 (479)
T ss_pred             -EEEecCCCceEEEecCcccchhhcccccccceeeeeeecCc--cceeeeecCCceEEEehhHhHHHHHHhCCccceeee
Confidence             89999999999999999999999999999999999996544  579999999999999999888877888888888877


Q ss_pred             EEccCCCeeeecccccceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEEecCCCCCCcCeEEEcCCCCEEEEEECC
Q 001415          560 AYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTND  639 (1082)
Q Consensus       560 ~~s~d~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~d  639 (1082)
                      ....-++                     .+-+|+.|+++++|++.....+ .+.++.  ..+-|++|-.+ ..+++|+.+
T Consensus       293 daL~reR---------------------~vtVGgrDrT~rlwKi~eesql-ifrg~~--~sidcv~~In~-~HfvsGSdn  347 (479)
T KOG0299|consen  293 DALSRER---------------------CVTVGGRDRTVRLWKIPEESQL-IFRGGE--GSIDCVAFIND-EHFVSGSDN  347 (479)
T ss_pred             chhcccc---------------------eEEeccccceeEEEecccccee-eeeCCC--CCeeeEEEecc-cceeeccCC
Confidence            6655554                     3444569999999999543333 333333  35788888765 468899999


Q ss_pred             CcEEEEEecCCccceeecccccccccccccccCCCCccccCCCCceeeeccCCceeEEEecccCCCCccccccccCcccc
Q 001415          640 NGIKILATSDGIRLLRTFENLAYDASRTSENSKNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRA  719 (1082)
Q Consensus       640 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~  719 (1082)
                      |.|.+|++...+.+...-..|....                +.                          ..     -.+.
T Consensus       348 G~IaLWs~~KKkplf~~~~AHgv~~----------------~~--------------------------~~-----~~~~  380 (479)
T KOG0299|consen  348 GSIALWSLLKKKPLFTSRLAHGVIP----------------EL--------------------------DP-----VNGN  380 (479)
T ss_pred             ceEEEeeecccCceeEeeccccccC----------------Cc--------------------------cc-----cccc
Confidence            9999999987644333322222110                00                          00     0033


Q ss_pred             cceeEEEEccCCceeeecccCCeEEEeeccccccCCCCCcccccCccccCCCCcceeecccCCCCCCCCccEEEeecCCC
Q 001415          720 TKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDS  799 (1082)
Q Consensus       720 ~~i~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~  799 (1082)
                      ..|++++..|....+++++.+|.+++|.+..+-..                   ..+   +....-.+.|++++|+++|+
T Consensus       381 ~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~-------------------i~~---l~~ls~~GfVNsl~f~~sgk  438 (479)
T KOG0299|consen  381 FWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRA-------------------INL---LYSLSLVGFVNSLAFSNSGK  438 (479)
T ss_pred             cceeeeEecccCceEEecCCCCceEEEEecCCccc-------------------cce---eeecccccEEEEEEEccCCC
Confidence            58999999999999999999999999976543110                   000   00111467899999999999


Q ss_pred             eEEEee
Q 001415          800 YVMSAS  805 (1082)
Q Consensus       800 ~l~~~s  805 (1082)
                      .+++|.
T Consensus       439 ~ivagi  444 (479)
T KOG0299|consen  439 RIVAGI  444 (479)
T ss_pred             EEEEec
Confidence            887775

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.92  E-value=1.4e-23  Score=201.74  Aligned_cols=306  Identities=18%  Similarity=0.335  Sum_probs=228.5

Q ss_pred             EeeccccCeeEEEecCCCCceEEEEEeCCCcEEEEEccCCceeEEeecCCcCeEEEeeeecCCceEEEEecCCCcEEEEe
Q 001415          460 EIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWL  539 (1082)
Q Consensus       460 ~~~~h~~~V~~l~fs~dg~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd  539 (1082)
                      .+.||.++|+.++-.....  ++.+++.|.+.+||.+++|.|+.++.||.+.|+++.|++..  .++++++.|++-.||.
T Consensus       143 e~~GHkDGiW~Vaa~~tqp--i~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~--~L~lTaSGD~taHIW~  218 (481)
T KOG0300|consen  143 ELEGHKDGIWHVAADSTQP--ICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSG--LLLLTASGDETAHIWK  218 (481)
T ss_pred             hhcccccceeeehhhcCCc--ceeecccccceeEEeeccccceeeecccccceeeEEecccc--ceEEEccCCcchHHHH
Confidence            6889999999999876655  89999999999999999999999999999999999998765  6999999999999996


Q ss_pred             cC----CCCce--e------eecCCC--CceEEEEEccCCC------eeeecccccceeEEEecCCCCEEEEEeCCCeEE
Q 001415          540 YD----NLGSR--V------DYEAPG--RWCTTMAYSADGT------RTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIK  599 (1082)
Q Consensus       540 ~~----~~~~~--~------~~~~~~--~~v~~~~~s~d~~------~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~  599 (1082)
                      ..    .....  .      ....+.  .+-..-....||.      ..+.| +...+.+..|-..++++++++-|.+..
T Consensus       219 ~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltg-H~~vV~a~dWL~gg~Q~vTaSWDRTAn  297 (481)
T KOG0300|consen  219 AAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTG-HRAVVSACDWLAGGQQMVTASWDRTAN  297 (481)
T ss_pred             HhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeec-cccceEehhhhcCcceeeeeeccccce
Confidence            21    11100  0      000000  0111111222322      12333 334677778888899999999999999


Q ss_pred             EEECCCcceEEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEecCCccceeecccccccccccccccCCCCcccc
Q 001415          600 FWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKNGDVRSL  679 (1082)
Q Consensus       600 iwd~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s  679 (1082)
                      +||+++++.+..+.+|.+  ..+.++-+|..+++++.+.|.+.++||.+...+.+..++                     
T Consensus       298 lwDVEtge~v~~LtGHd~--ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQ---------------------  354 (481)
T KOG0300|consen  298 LWDVETGEVVNILTGHDS--ELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQ---------------------  354 (481)
T ss_pred             eeeeccCceeccccCcch--hccccccCCcceEEEEeccCceeEeccchhhcceeeeec---------------------
Confidence            999999999999998876  688899999999999999999999999864311111111                     


Q ss_pred             CCCCceeeeccCCceeEEEecccCCCCccccccccCcccccceeEEEEccCCceeeecccCCeEEEeeccccccCCCCCc
Q 001415          680 ADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKA  759 (1082)
Q Consensus       680 ~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~  759 (1082)
                                                                                                      
T Consensus       355 --------------------------------------------------------------------------------  354 (481)
T KOG0300|consen  355 --------------------------------------------------------------------------------  354 (481)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccCccccCCCCcceeecccCCCCCCCCccEEEeecCCCeEEEee-CCeEEEEecCCCe-eEEEECCCCCCeeEEEEec
Q 001415          760 TASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFK-TMATFMPPPPAATFLAFHP  837 (1082)
Q Consensus       760 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~l~~~s-dg~i~iwd~~~~~-~~~~~~~~~~~v~~l~~sp  837 (1082)
                                              +|...|+++.|..|.+ +++|+ |.+|++||+.+.+ ++.++. ....++.++.+.
T Consensus       355 ------------------------GHtdtVTS~vF~~dd~-vVSgSDDrTvKvWdLrNMRsplATIR-tdS~~NRvavs~  408 (481)
T KOG0300|consen  355 ------------------------GHTDTVTSVVFNTDDR-VVSGSDDRTVKVWDLRNMRSPLATIR-TDSPANRVAVSK  408 (481)
T ss_pred             ------------------------ccccceeEEEEecCCc-eeecCCCceEEEeeeccccCcceeee-cCCccceeEeec
Confidence                                    2555566666655554 34444 4677888877543 344554 456788999998


Q ss_pred             CCCcEEEEEeCCCcEEEEecccceeeeee-----cccccCEEEEEEeCCC--CEEEEEeCCCcEEEEEcCC
Q 001415          838 QDNNIIAIGMDDSSIQIYNVRVDEVKSKL-----KGHSKRITGLAFSHAL--NVLVSSGADSQLCVWSSDG  901 (1082)
Q Consensus       838 ~~~~~lasg~~dg~v~iwd~~~~~~~~~l-----~~h~~~V~~l~~s~d~--~~l~s~s~Dg~i~vwd~~~  901 (1082)
                       ++.+||.--++..|++||+...+ +..+     ++|...|+|++|..+.  .-|++++-|..+.-|++..
T Consensus       409 -g~~iIAiPhDNRqvRlfDlnG~R-laRlPrtsRqgHrRMV~c~AW~eehp~cnLftcGFDR~v~gW~in~  477 (481)
T KOG0300|consen  409 -GHPIIAIPHDNRQVRLFDLNGNR-LARLPRTSRQGHRRMVTCCAWLEEHPACNLFTCGFDRMVAGWKINT  477 (481)
T ss_pred             -CCceEEeccCCceEEEEecCCCc-cccCCcccccccceeeeeeeccccCcccccccccccceeeeeEecc
Confidence             88899999999999999998554 3333     5899999999998654  3488999999999999876

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.92  E-value=2.8e-22  Score=183.61  Aligned_cols=301  Identities=16%  Similarity=0.156  Sum_probs=229.5

Q ss_pred             CCcCeEEEcCCCCEEEEEECCCcEEEEEecCCccceeecccccccccccccccCCCCccccCCCCceeeeccCCceeEEE
Q 001415          619 PASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKNGDVRSLADVKPRITEESNDKSKVWK  698 (1082)
Q Consensus       619 ~~i~~~~~s~dg~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~iw~  698 (1082)
                      ..|.+++|+|.|.+.++|++..+++|-....   +...-.+|.......++-+                          .
T Consensus        33 qairav~fhp~g~lyavgsnskt~ric~yp~---l~~~r~~hea~~~pp~v~~--------------------------k   83 (350)
T KOG0641|consen   33 QAIRAVAFHPAGGLYAVGSNSKTFRICAYPA---LIDLRHAHEAAKQPPSVLC--------------------------K   83 (350)
T ss_pred             hheeeEEecCCCceEEeccCCceEEEEcccc---ccCcccccccccCCCeEEe--------------------------e
Confidence            3689999999999999999999998865432   1222223322221101111                          0


Q ss_pred             ecccCCCCccccccccCcccccceeEEEEccCCceeeecccCCeEEEeeccccccCCCCCcccccCccccCCCCcceeec
Q 001415          699 LTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTN  778 (1082)
Q Consensus       699 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  778 (1082)
                                     ....|.+.|.+.+|+|+|+.+++++.|..|++..+.....+..|.                .   
T Consensus        84 ---------------r~khhkgsiyc~~ws~~geliatgsndk~ik~l~fn~dt~~~~g~----------------d---  129 (350)
T KOG0641|consen   84 ---------------RNKHHKGSIYCTAWSPCGELIATGSNDKTIKVLPFNADTCNATGH----------------D---  129 (350)
T ss_pred             ---------------eccccCccEEEEEecCccCeEEecCCCceEEEEecccccccccCc----------------c---
Confidence                           012388999999999999999999999999987665433322221                1   


Q ss_pred             ccCCCCCCCCccEEEeec----CCCeEEEee--CCeEEEEecCCCeeEEEECCCCCCeeEEEEecCCCcEEEEEeCCCcE
Q 001415          779 DVTDSNPEEAVPCFALSK----NDSYVMSAS--GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSI  852 (1082)
Q Consensus       779 ~~~~~~~~~~i~~l~~s~----dg~~l~~~s--dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasg~~dg~v  852 (1082)
                       +...-|.+.|+.++|-.    .|.+|++++  |.+|++-|...++....+.+|.+.|.++.--  ++.++++|+.|.+|
T Consensus       130 -le~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~sghtghilalysw--n~~m~~sgsqdkti  206 (350)
T KOG0641|consen  130 -LEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALSGHTGHILALYSW--NGAMFASGSQDKTI  206 (350)
T ss_pred             -eeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeecCCcccEEEEEEe--cCcEEEccCCCceE
Confidence             11122889999999964    355788876  5678888999999999999999998876422  56899999999999


Q ss_pred             EEEecccceeeeeecc-------cccCEEEEEEeCCCCEEEEEeCCCcEEEEEcCCcccccceeeeccCCCCCCCCCCcE
Q 001415          853 QIYNVRVDEVKSKLKG-------HSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTR  925 (1082)
Q Consensus       853 ~iwd~~~~~~~~~l~~-------h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~  925 (1082)
                      ++||++-..++.++..       .++.|.+++..|.|++|++|-.|....+||+..+     +.++.+..|.   ..|.+
T Consensus       207 rfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lydirg~-----r~iq~f~phs---adir~  278 (350)
T KOG0641|consen  207 RFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGG-----RMIQRFHPHS---ADIRC  278 (350)
T ss_pred             EEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEEeeCC-----ceeeeeCCCc---cceeE
Confidence            9999998888777642       2367999999999999999999999999999995     4566666666   68999


Q ss_pred             EEEcCCCcEEEE-EecCeEEEEEccCc--ceeeeeccCCCCcceeEEEEcCCCceEEEeecCCcEEEEecC
Q 001415          926 VQFHQDQIHFLV-VHETQLAIFETTKL--ECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAA  993 (1082)
Q Consensus       926 ~~fspdg~~l~~-~~d~~i~iwd~~~~--~~~~~~~~~~h~~~i~~l~~s~dg~~l~t~s~dg~v~vwd~~  993 (1082)
                      +.|||...|+.+ +.|..|++-|+...  ..+.......|...+..+.|.|..--+++.+.|.++.+|.+.
T Consensus       279 vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~ehkdk~i~~rwh~~d~sfisssadkt~tlwa~~  349 (350)
T KOG0641|consen  279 VRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHKDKAIQCRWHPQDFSFISSSADKTATLWALN  349 (350)
T ss_pred             EEeCCCceEEEEecccceEEEeecccchhhcCceEEEEeccCceEEEEecCccceeeeccCcceEEEeccC
Confidence            999999999999 68999999998532  222333345788999999999998888999999999999764

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.92  E-value=2.3e-23  Score=209.33  Aligned_cols=284  Identities=15%  Similarity=0.224  Sum_probs=235.5

Q ss_pred             CCCceEEEEecCCCeEEEEEcCCCcEEEEEccccceeeeeceeeeccCCCCcccccccccCCCCceeEEEEecCCCeEEE
Q 001415          358 GSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGV  437 (1082)
Q Consensus       358 ~~~v~~~~~spdg~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las  437 (1082)
                      .-.++++...|... .+.+|+.|..+.++|...++.+.                   ++.||.-.|+.+.|+|+...+++
T Consensus       219 ~pgi~ald~~~s~~-~ilTGG~d~~av~~d~~s~q~l~-------------------~~~Gh~kki~~v~~~~~~~~v~~  278 (506)
T KOG0289|consen  219 TPGITALDIIPSSS-KILTGGEDKTAVLFDKPSNQILA-------------------TLKGHTKKITSVKFHKDLDTVIT  278 (506)
T ss_pred             CCCeeEEeecCCCC-cceecCCCCceEEEecchhhhhh-------------------hccCcceEEEEEEeccchhheee
Confidence            35688888888845 59999999999999999988877                   48999999999999999999999


Q ss_pred             EeCCCeEEEEEccCCceeeEEEEeeccccCeeEEEecCCCCceEEEEEeCCCcEEEEEccCCceeEEeecC--CcCeEEE
Q 001415          438 AYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGH--EAPVYSV  515 (1082)
Q Consensus       438 ~~~d~~v~iwd~~~~~~~~~~~~~~~h~~~V~~l~fs~dg~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h--~~~v~~~  515 (1082)
                      ++.|..|+||.........   ....|.++|+.+...|.|.  ||++++.|++..+.|+++|..+......  .-.+++.
T Consensus       279 aSad~~i~vws~~~~s~~~---~~~~h~~~V~~ls~h~tge--YllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~  353 (506)
T KOG0289|consen  279 ASADEIIRVWSVPLSSEPT---SSRPHEEPVTGLSLHPTGE--YLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSA  353 (506)
T ss_pred             cCCcceEEeeccccccCcc---ccccccccceeeeeccCCc--EEEEecCCceEEEEEccCCcEEEEEeeccccceeEEe
Confidence            9999999999998776544   5778999999999999999  8999999999999999999998776532  2347888


Q ss_pred             eeeecCCceEEEEecCCCcEEEEecCCCCceeeecCCCCceEEEEEccCCCeeeecccccceeEEEecCCCCEEEEEeCC
Q 001415          516 CPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDD  595 (1082)
Q Consensus       516 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d  595 (1082)
                      +|||++  ..+.+|..|+.|++||+.+......+.+|.++|..++|+.+|-                     +++++++|
T Consensus       354 ~fHpDg--Lifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY---------------------~Lat~add  410 (506)
T KOG0289|consen  354 AFHPDG--LIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGY---------------------WLATAADD  410 (506)
T ss_pred             eEcCCc--eEEeccCCCceEEEEEcCCccccccCCCCCCceeEEEeccCce---------------------EEEEEecC
Confidence            888654  7999999999999999999998889999999999999999887                     89999999


Q ss_pred             CeEEEEECCCcceEEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEecCC-ccceeecccccccccccccccCCC
Q 001415          596 FSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG-IRLLRTFENLAYDASRTSENSKNG  674 (1082)
Q Consensus       596 g~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~  674 (1082)
                      +.|++||++..+...++...... ++.++.|.+.|.+|+.++.+=.|++++-.+. ......+..|.....  .+.|   
T Consensus       411 ~~V~lwDLRKl~n~kt~~l~~~~-~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W~~~~~~~~~sg~st--~v~F---  484 (506)
T KOG0289|consen  411 GSVKLWDLRKLKNFKTIQLDEKK-EVNSLSFDQSGTYLGIAGSDLQVYICKKKTKSWTEIKELADHSGLST--GVRF---  484 (506)
T ss_pred             CeEEEEEehhhcccceeeccccc-cceeEEEcCCCCeEEeecceeEEEEEecccccceeeehhhhcccccc--eeee---
Confidence            99999999998888888766554 6899999999999999977666666553222 234444444443222  4445   


Q ss_pred             CccccCCCCceeeeccCCceeEEEe
Q 001415          675 DVRSLADVKPRITEESNDKSKVWKL  699 (1082)
Q Consensus       675 ~~~~s~~~~~l~~~~~d~~i~iw~~  699 (1082)
                          ....+++++++.|..++++.+
T Consensus       485 ----g~~aq~l~s~smd~~l~~~a~  505 (506)
T KOG0289|consen  485 ----GEHAQYLASTSMDAILRLYAL  505 (506)
T ss_pred             ----cccceEEeeccchhheEEeec
Confidence                667778888888887777643

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.92  E-value=6.7e-23  Score=197.96  Aligned_cols=248  Identities=16%  Similarity=0.271  Sum_probs=193.7

Q ss_pred             eEEEEeeccccCeeEEEecCCCCceEEEEEeCCCcEEEEEccCCceeEEeecCCcCeEEEeeeecCCceEEEEecCCCcE
Q 001415          456 RQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKI  535 (1082)
Q Consensus       456 ~~~~~~~~h~~~V~~l~fs~dg~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i  535 (1082)
                      .+.+.+..|.++|+++|.+  +.  ++||||.|-+|+|||+.+...+..+-.|.+.|+++.|.+......|++|+.||.|
T Consensus        34 ~~lF~~~aH~~sitavAVs--~~--~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i  109 (362)
T KOG0294|consen   34 KPLFAFSAHAGSITALAVS--GP--YVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHI  109 (362)
T ss_pred             eccccccccccceeEEEec--ce--eEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCCcE
Confidence            3455678999999999986  66  8999999999999999999999999999999999999877655689999999999


Q ss_pred             EEEecCCCCceeeecCCCCceEEEEEccCCCeeeecccccceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEEecC
Q 001415          536 KAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDAD  615 (1082)
Q Consensus       536 ~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~  615 (1082)
                      .+|+...-.....+..|.+.|+.+++.|.++                     ..++.+.|+.++.||+-.|+.-..+...
T Consensus       110 ~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~K---------------------LALsVg~D~~lr~WNLV~Gr~a~v~~L~  168 (362)
T KOG0294|consen  110 IIWRVGSWELLKSLKAHKGQVTDLSIHPSGK---------------------LALSVGGDQVLRTWNLVRGRVAFVLNLK  168 (362)
T ss_pred             EEEEcCCeEEeeeecccccccceeEecCCCc---------------------eEEEEcCCceeeeehhhcCccceeeccC
Confidence            9999998777777777777777666666655                     7788999999999999999877666554


Q ss_pred             CCCCCcCeEEEcCCCCEEEEEECCCcEEEEEecCCccceeecccccccccccccccCCCCccccCCCCceeeeccCCcee
Q 001415          616 GGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKNGDVRSLADVKPRITEESNDKSK  695 (1082)
Q Consensus       616 ~~~~~i~~~~~s~dg~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~  695 (1082)
                      ..   ...+.|+|.|.+++++..+ .|-+|.+.+. .....+.                                     
T Consensus       169 ~~---at~v~w~~~Gd~F~v~~~~-~i~i~q~d~A-~v~~~i~-------------------------------------  206 (362)
T KOG0294|consen  169 NK---ATLVSWSPQGDHFVVSGRN-KIDIYQLDNA-SVFREIE-------------------------------------  206 (362)
T ss_pred             Cc---ceeeEEcCCCCEEEEEecc-EEEEEecccH-hHhhhhh-------------------------------------
Confidence            43   3559999999988877764 4667765443 1100000                                     


Q ss_pred             EEEecccCCCCccccccccCcccccceeEEEEccCCceeeecccCCeEEEeeccccccCCCCCcccccCccccCCCCcce
Q 001415          696 VWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIM  775 (1082)
Q Consensus       696 iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  775 (1082)
                                                                                                      
T Consensus       207 --------------------------------------------------------------------------------  206 (362)
T KOG0294|consen  207 --------------------------------------------------------------------------------  206 (362)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             eecccCCCCCCCCccEEEeecCCCeEEEee-CCeEEEEecCCCeeEEEECCCCCCeeEEEE-ecCCCcEEEEEeCCCcEE
Q 001415          776 MTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAF-HPQDNNIIAIGMDDSSIQ  853 (1082)
Q Consensus       776 ~~~~~~~~~~~~~i~~l~~s~dg~~l~~~s-dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~-sp~~~~~lasg~~dg~v~  853 (1082)
                               ....+.|+.|-. +..+++|. ++.|.+||.++..+...+.+|..+|..+.+ ...++.+|++++.||.|+
T Consensus       207 ---------~~~r~l~~~~l~-~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~  276 (362)
T KOG0294|consen  207 ---------NPKRILCATFLD-GSELLVGGDNEWISLKDTDSDTPLTEFLAHENRVKDIASYTNPEHEYLVTASSDGFIK  276 (362)
T ss_pred             ---------ccccceeeeecC-CceEEEecCCceEEEeccCCCccceeeecchhheeeeEEEecCCceEEEEeccCceEE
Confidence                     112233444433 34555554 588999999999999999999999999984 333778999999999999


Q ss_pred             EEecccc
Q 001415          854 IYNVRVD  860 (1082)
Q Consensus       854 iwd~~~~  860 (1082)
                      |||+...
T Consensus       277 vWd~~~~  283 (362)
T KOG0294|consen  277 VWDIDME  283 (362)
T ss_pred             EEEcccc
Confidence            9999865

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.92  E-value=8.5e-24  Score=196.55  Aligned_cols=257  Identities=18%  Similarity=0.235  Sum_probs=205.1

Q ss_pred             CCCCCceEEEEecCCCeEEEEEcCCCcEEEEEccccceeeeeceeeeccCCCCcccccccccCCCCceeEEEEec--CCC
Q 001415          356 NQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP--DGS  433 (1082)
Q Consensus       356 ~h~~~v~~~~~spdg~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~sp--dg~  433 (1082)
                      .|.+.|..+...--|++ |||++.|++|+|+.+..+....                .-..|.||.++|+.++|-.  -|.
T Consensus         9 ~H~D~IHda~lDyygkr-lATcsSD~tVkIf~v~~n~~s~----------------ll~~L~Gh~GPVwqv~wahPk~G~   71 (299)
T KOG1332|consen    9 QHEDMIHDAQLDYYGKR-LATCSSDGTVKIFEVRNNGQSK----------------LLAELTGHSGPVWKVAWAHPKFGT   71 (299)
T ss_pred             hhhhhhhHhhhhhhcce-eeeecCCccEEEEEEcCCCCce----------------eeeEecCCCCCeeEEeecccccCc
Confidence            48899999999999996 9999999999999997755311                0113899999999999987  899


Q ss_pred             eEEEEeCCCeEEEEEccCCceeeEEEEeeccccCeeEEEecCCCCceEEEEEeCCCcEEEEEccCC---ceeEEeecCCc
Q 001415          434 LFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNG---AKQYIFEGHEA  510 (1082)
Q Consensus       434 ~las~~~d~~v~iwd~~~~~~~~~~~~~~~h~~~V~~l~fs~dg~~~~l~s~s~d~~i~vwd~~~~---~~~~~~~~h~~  510 (1082)
                      +||+++.||.|.||.-+++. ..+..+...|...|++++|.|.+-.++|++++.||.|.|.+.++.   ...+....|.-
T Consensus        72 iLAScsYDgkVIiWke~~g~-w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~  150 (299)
T KOG1332|consen   72 ILASCSYDGKVIIWKEENGR-WTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEI  150 (299)
T ss_pred             EeeEeecCceEEEEecCCCc-hhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhcccc
Confidence            99999999999999999883 445557788999999999999988889999999999999998764   22345567999


Q ss_pred             CeEEEeeeecCC-c-----------eEEEEecCCCcEEEEecCCCCc--eeeecCCCCceEEEEEccCCCeeeecccccc
Q 001415          511 PVYSVCPHHKEN-I-----------QFIFSTALDGKIKAWLYDNLGS--RVDYEAPGRWCTTMAYSADGTRTYQGFRKRS  576 (1082)
Q Consensus       511 ~v~~~~~~~~~~-~-----------~~l~s~~~dg~i~iwd~~~~~~--~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~  576 (1082)
                      .|++++|.|..- |           ..|++|+.|..|++|+.++..-  ...+..|.+.|+.++|.|.-..         
T Consensus       151 GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl---------  221 (299)
T KOG1332|consen  151 GVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGL---------  221 (299)
T ss_pred             ccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCC---------
Confidence            999999987621 1           5699999999999999987532  2357888999999999886420         


Q ss_pred             eeEEEecCCCCEEEEEeCCCeEEEEECCCc-ce-EEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEec
Q 001415          577 LGVVQFDTTKNRFLAAGDDFSIKFWDMDSV-QL-LTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATS  648 (1082)
Q Consensus       577 i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~-~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~iwd~~  648 (1082)
                              ...++++++.||.+.||..+.. +. ..++ .+.-...+..+.||..|+.|++++.|+.+.+|.-.
T Consensus       222 --------~~s~iAS~SqDg~viIwt~~~e~e~wk~tl-l~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~  286 (299)
T KOG1332|consen  222 --------PKSTIASCSQDGTVIIWTKDEEYEPWKKTL-LEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKEN  286 (299)
T ss_pred             --------CceeeEEecCCCcEEEEEecCccCcccccc-cccCCcceEEEEEeccccEEEEecCCcEEEEEEeC
Confidence                    1126999999999999976522 11 1111 11223368899999999999999999999999754

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.92  E-value=1.6e-24  Score=212.60  Aligned_cols=287  Identities=16%  Similarity=0.207  Sum_probs=223.5

Q ss_pred             eecCCCCCceEEEEecCCCeEEEEEcCCCcEEEEEccccceeeeeceeeeccCCCCcccccccccCCCCceeEEEEecCC
Q 001415          353 RTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDG  432 (1082)
Q Consensus       353 ~~~~h~~~v~~~~~spdg~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg  432 (1082)
                      .+-+|.+.|.|++=+|..-..+|+|+.||.|+|||+....++.+                   +..|.+.|..|++..  
T Consensus        61 ~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~-------------------f~AH~G~V~Gi~v~~--  119 (433)
T KOG0268|consen   61 SLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRT-------------------FKAHEGLVRGICVTQ--  119 (433)
T ss_pred             hccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhhe-------------------eecccCceeeEEecc--
Confidence            55679999999999999844699999999999999998887764                   889999999999987  


Q ss_pred             CeEEEEeCCCeEEEEEccCCceeeEEEEeeccccCeeEEEecCCCCceEEEEEeCCCcEEEEEccCCceeEEeecCCcCe
Q 001415          433 SLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPV  512 (1082)
Q Consensus       433 ~~las~~~d~~v~iwd~~~~~~~~~~~~~~~h~~~V~~l~fs~dg~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v  512 (1082)
                      ..+++++.|.+|+.|.+... .+.   ++.+ ...+..+.-+..+.  .++|||.  .|.|||.....++..+.-....|
T Consensus       120 ~~~~tvgdDKtvK~wk~~~~-p~~---tilg-~s~~~gIdh~~~~~--~FaTcGe--~i~IWD~~R~~Pv~smswG~Dti  190 (433)
T KOG0268|consen  120 TSFFTVGDDKTVKQWKIDGP-PLH---TILG-KSVYLGIDHHRKNS--VFATCGE--QIDIWDEQRDNPVSSMSWGADSI  190 (433)
T ss_pred             cceEEecCCcceeeeeccCC-cce---eeec-cccccccccccccc--cccccCc--eeeecccccCCccceeecCCCce
Confidence            77888999999999998873 222   3333 34566666666666  6888875  59999999999999998888899


Q ss_pred             EEEeeeecCCceEEEEecCCCcEEEEecCCCCceeeecCCCCceEEEEEccCCCeeeecccccceeEEEecCCCCEEEEE
Q 001415          513 YSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAA  592 (1082)
Q Consensus       513 ~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~i~~~~~~~~~~~l~~~  592 (1082)
                      .++.|+|... ..|++|+.|+.|.+||++...+....... .                     ....++|+|.+-.|+++
T Consensus       191 ~svkfNpvET-sILas~~sDrsIvLyD~R~~~Pl~KVi~~-m---------------------RTN~IswnPeafnF~~a  247 (433)
T KOG0268|consen  191 SSVKFNPVET-SILASCASDRSIVLYDLRQASPLKKVILT-M---------------------RTNTICWNPEAFNFVAA  247 (433)
T ss_pred             eEEecCCCcc-hheeeeccCCceEEEecccCCccceeeee-c---------------------cccceecCccccceeec
Confidence            9999998775 68999999999999999986665432211 0                     23346666655578899


Q ss_pred             eCCCeEEEEECCCcc-eEEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEecCCccceeeccccccccccccccc
Q 001415          593 GDDFSIKFWDMDSVQ-LLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENS  671 (1082)
Q Consensus       593 ~~dg~i~iwd~~~~~-~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  671 (1082)
                      ++|..++.+|++.-+ ++.....|  ...|.++.|||.|+-+++|+.|.+|+||....+...-.-.......+.  ++.|
T Consensus       248 ~ED~nlY~~DmR~l~~p~~v~~dh--vsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYhtkRMq~V~--~Vk~  323 (433)
T KOG0268|consen  248 NEDHNLYTYDMRNLSRPLNVHKDH--VSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHTKRMQHVF--CVKY  323 (433)
T ss_pred             cccccceehhhhhhcccchhhccc--ceeEEEeccCCCcchhccccccceEEEeecCCCcchhhhhHhhhheee--EEEE
Confidence            999999999987643 44555544  447999999999999999999999999998776322111112222222  5555


Q ss_pred             CCCCccccCCCCceeeeccCCceeEEEecccC
Q 001415          672 KNGDVRSLADVKPRITEESNDKSKVWKLTELS  703 (1082)
Q Consensus       672 ~~~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~  703 (1082)
                             +.|.+++++|+.|+.|++|......
T Consensus       324 -------S~Dskyi~SGSdd~nvRlWka~Ase  348 (433)
T KOG0268|consen  324 -------SMDSKYIISGSDDGNVRLWKAKASE  348 (433)
T ss_pred             -------eccccEEEecCCCcceeeeecchhh
Confidence                   9999999999999999999976543

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.91  E-value=4e-23  Score=219.82  Aligned_cols=274  Identities=14%  Similarity=0.229  Sum_probs=221.1

Q ss_pred             ccccceeEEEEccCCceeeecccCCeEEEeeccccccCCCCCcccccCccccCCCCcceeecccCCCCCCCCccE-EEee
Q 001415          717 LRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPC-FALS  795 (1082)
Q Consensus       717 ~~~~~i~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-l~~s  795 (1082)
                      +|...|..+++.+.. .+++++.||++++|+-.....                      +.. ....+|.+.|.. +++-
T Consensus        12 gH~~DVr~v~~~~~~-~i~s~sRd~t~~vw~~~~~~~----------------------l~~-~~~~~~~g~i~~~i~y~   67 (745)
T KOG0301|consen   12 GHKSDVRAVAVTDGV-CIISGSRDGTVKVWAKKGKQY----------------------LET-HAFEGPKGFIANSICYA   67 (745)
T ss_pred             cCccchheeEecCCe-EEeecCCCCceeeeeccCccc----------------------ccc-eecccCcceeeccceec
Confidence            488888888877665 689999999999996432111                      110 001125555555 6766


Q ss_pred             c-CCCeEEEee-CCeEEEEecCCCeeEEEECCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEecccceeeeeecccccCE
Q 001415          796 K-NDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRI  873 (1082)
Q Consensus       796 ~-dg~~l~~~s-dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V  873 (1082)
                      + ++-.+++|+ |.+|.+|...+..+..++.+|...|.++.... ++. +++|+.|.++++|..  +++...+.+|...|
T Consensus        68 e~~~~~l~~g~~D~~i~v~~~~~~~P~~~LkgH~snVC~ls~~~-~~~-~iSgSWD~TakvW~~--~~l~~~l~gH~asV  143 (745)
T KOG0301|consen   68 ESDKGRLVVGGMDTTIIVFKLSQAEPLYTLKGHKSNVCSLSIGE-DGT-LISGSWDSTAKVWRI--GELVYSLQGHTASV  143 (745)
T ss_pred             cccCcceEeecccceEEEEecCCCCchhhhhccccceeeeecCC-cCc-eEecccccceEEecc--hhhhcccCCcchhe
Confidence            4 333466665 89999999999999999999999999999887 665 899999999999975  46677799999999


Q ss_pred             EEEEEeCCCCEEEEEeCCCcEEEEEcCCcccccceeeeccCCCCCCCCCCcEEEEcCCCcEEEEEecCeEEEEEccCcce
Q 001415          874 TGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLEC  953 (1082)
Q Consensus       874 ~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~~d~~i~iwd~~~~~~  953 (1082)
                      +++++-|++ .++|||.|.+|++|.-.+       .++.+.+|.   ..|+.+++-+++.++-++.||.|++|++ +|++
T Consensus       144 WAv~~l~e~-~~vTgsaDKtIklWk~~~-------~l~tf~gHt---D~VRgL~vl~~~~flScsNDg~Ir~w~~-~ge~  211 (745)
T KOG0301|consen  144 WAVASLPEN-TYVTGSADKTIKLWKGGT-------LLKTFSGHT---DCVRGLAVLDDSHFLSCSNDGSIRLWDL-DGEV  211 (745)
T ss_pred             eeeeecCCC-cEEeccCcceeeeccCCc-------hhhhhccch---hheeeeEEecCCCeEeecCCceEEEEec-cCce
Confidence            999999988 889999999999997644       677888888   6899999999999999999999999999 7888


Q ss_pred             eeeeccCCCCcceeEEEEcCCCceEEEeecCCcEEEEecCCceeeeeeCCCeecCCCCCCCCceeeEEEEeCCCCCeEEE
Q 001415          954 VKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFAL 1033 (1082)
Q Consensus       954 ~~~~~~~~h~~~i~~l~~s~dg~~l~t~s~dg~v~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~~~~~~~d~~~l~s 1033 (1082)
                      +....  +|..-|.++....++..++++++|++++||+..  ++.+.|.    +|.    ..++  ++.+.+  +.-+++
T Consensus       212 l~~~~--ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~--e~~q~I~----lPt----tsiW--sa~~L~--NgDIvv  275 (745)
T KOG0301|consen  212 LLEMH--GHTNFVYSISMALSDGLIVSTGEDRTLRIWKKD--ECVQVIT----LPT----TSIW--SAKVLL--NGDIVV  275 (745)
T ss_pred             eeeee--ccceEEEEEEecCCCCeEEEecCCceEEEeecC--ceEEEEe----cCc----cceE--EEEEee--CCCEEE
Confidence            77765  999999999999999999999999999999987  6666666    332    2355  555555  345899


Q ss_pred             EecCCcEEEEccC
Q 001415         1034 GLSDGGVHVFEPL 1046 (1082)
Q Consensus      1034 ~~~dg~v~vW~~~ 1046 (1082)
                      |++||.|+||...
T Consensus       276 g~SDG~VrVfT~~  288 (745)
T KOG0301|consen  276 GGSDGRVRVFTVD  288 (745)
T ss_pred             eccCceEEEEEec
Confidence            9999999999877

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.91  E-value=1.9e-22  Score=212.38  Aligned_cols=494  Identities=11%  Similarity=0.113  Sum_probs=279.4

Q ss_pred             CceEEEEecCCCeEEEEEcCCCcEEEEEccccceeeeeceeeeccCCCCcccccccccCCCCceeEEEEecCCCeEEEEe
Q 001415          360 SPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAY  439 (1082)
Q Consensus       360 ~v~~~~~spdg~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~  439 (1082)
                      .|..++|-|||..|++.+  +..+.|||++.|..+.+                   +++|.+.|.|+|||.||+.+|+|+
T Consensus        14 ci~d~afkPDGsqL~lAA--g~rlliyD~ndG~llqt-------------------LKgHKDtVycVAys~dGkrFASG~   72 (1081)
T KOG1538|consen   14 CINDIAFKPDGTQLILAA--GSRLLVYDTSDGTLLQP-------------------LKGHKDTVYCVAYAKDGKRFASGS   72 (1081)
T ss_pred             chheeEECCCCceEEEec--CCEEEEEeCCCcccccc-------------------cccccceEEEEEEccCCceeccCC
Confidence            899999999999766543  57899999999998874                   999999999999999999999999


Q ss_pred             CCCeEEEEEccCCceeeEEEEeeccccCeeEEEecCCCCceEEEEEeCCCcEEEEEccCCceeEEeecCCcCeEEEeeee
Q 001415          440 SRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHH  519 (1082)
Q Consensus       440 ~d~~v~iwd~~~~~~~~~~~~~~~h~~~V~~l~fs~dg~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~  519 (1082)
                      .|..|.+|+.+-...++     ..|.+.|.|+.|+|-..  .|+|++-. ..-+|..+.....+. + ....+.+++|  
T Consensus        73 aDK~VI~W~~klEG~Lk-----YSH~D~IQCMsFNP~~h--~LasCsLs-dFglWS~~qK~V~K~-k-ss~R~~~CsW--  140 (1081)
T KOG1538|consen   73 ADKSVIIWTSKLEGILK-----YSHNDAIQCMSFNPITH--QLASCSLS-DFGLWSPEQKSVSKH-K-SSSRIICCSW--  140 (1081)
T ss_pred             CceeEEEecccccceee-----eccCCeeeEeecCchHH--Hhhhcchh-hccccChhhhhHHhh-h-hheeEEEeee--
Confidence            99999999977544333     36999999999999998  68888753 466898665443321 1 2234555555  


Q ss_pred             cCCceEEEEecCCCcEEEEecCCCCceeeecC---CCCceEEEEEccCCCeeeecccccceeEEEecCCCCEEEEEeCCC
Q 001415          520 KENIQFIFSTALDGKIKAWLYDNLGSRVDYEA---PGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDF  596 (1082)
Q Consensus       520 ~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~---~~~~v~~~~~s~d~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg  596 (1082)
                      ..||++++.|-.+|+|.+-+-.. ++...+.-   ...+|.+++|+|...   .|             ....+++..-..
T Consensus       141 tnDGqylalG~~nGTIsiRNk~g-Eek~~I~Rpgg~Nspiwsi~~~p~sg---~G-------------~~di~aV~DW~q  203 (1081)
T KOG1538|consen  141 TNDGQYLALGMFNGTISIRNKNG-EEKVKIERPGGSNSPIWSICWNPSSG---EG-------------RNDILAVADWGQ  203 (1081)
T ss_pred             cCCCcEEEEeccCceEEeecCCC-CcceEEeCCCCCCCCceEEEecCCCC---CC-------------ccceEEEEeccc
Confidence            57789999999999999885433 33333332   455788888887653   11             112566777778


Q ss_pred             eEEEEECCCcceEEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEecCCccceeecccccccccccccccCCCCc
Q 001415          597 SIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKNGDV  676 (1082)
Q Consensus       597 ~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  676 (1082)
                      ++.++.+. |+.+..-..-+-  ...|+.+.++|.++..|+.|+.+.+|... | -.+.++......+.  ++..     
T Consensus       204 TLSFy~Ls-G~~Igk~r~L~F--dP~CisYf~NGEy~LiGGsdk~L~~fTR~-G-vrLGTvg~~D~WIW--tV~~-----  271 (1081)
T KOG1538|consen  204 TLSFYQLS-GKQIGKDRALNF--DPCCISYFTNGEYILLGGSDKQLSLFTRD-G-VRLGTVGEQDSWIW--TVQA-----  271 (1081)
T ss_pred             eeEEEEec-ceeecccccCCC--CchhheeccCCcEEEEccCCCceEEEeec-C-eEEeeccccceeEE--EEEE-----
Confidence            88888874 444432221111  35789999999999999999999998532 3 12222222222221  2222     


Q ss_pred             cccCCCCceeeeccCCceeEEEecccCCCCccccccccCcccccceeEEEEc--cCCceeeecccC--CeEEEeeccccc
Q 001415          677 RSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFT--NSGNAILALASN--AIHLLWKWQRTE  752 (1082)
Q Consensus       677 ~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s--~~~~~l~~~~~d--~~i~iw~~~~~~  752 (1082)
                        -|+++.++.|..||+|..|++...    ....+.-..-......+.+.+-  -.++.+-..+.|  ..+.+|+-..  
T Consensus       272 --~PNsQ~v~~GCqDGTiACyNl~fS----TVH~ly~~RYA~R~sMtDVivQhLi~~qkvrIkC~DLVkKiaiYrnrL--  343 (1081)
T KOG1538|consen  272 --KPNSQYVVVGCQDGTIACYNLIFS----TVHGLYKDRYAYRDSMTDVIVQHLITEQKVRIKCKDLVKKIAIYRNRL--  343 (1081)
T ss_pred             --ccCCceEEEEEccCeeehhhhHHh----HhhhhhHHhhhhhhhhHHHHHHHHhhcceeeeeHHHHHHHHHhhhhhh--
Confidence              556666666666666666655321    0000000000000000000000  000000000000  0000000000  


Q ss_pred             cCCCCCcccccCccccCCCCcceeecccCCCCCCCCccEEEee---cCCCeEEEeeCCeEEEEecCCCeeEEEECCCCCC
Q 001415          753 RNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALS---KNDSYVMSASGGKISLFNMMTFKTMATFMPPPPA  829 (1082)
Q Consensus       753 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s---~dg~~l~~~sdg~i~iwd~~~~~~~~~~~~~~~~  829 (1082)
                           ..--...+.+|...++.......+.  ...-...+.+|   -.+..++.+.+..+.-+|...-+...-.  -..-
T Consensus       344 -----AVQLpeki~iYel~se~~~~mhY~v--~ekI~kkf~cSLlVVc~~HiVlCqekrLqClDF~Gvk~ReW~--M~S~  414 (1081)
T KOG1538|consen  344 -----AVQLPEKILIYELYSEDLSDMHYRV--KEKIIKKFECSLLVVCANHIVLCQEKRLQCLDFSGVKEREWQ--MESL  414 (1081)
T ss_pred             -----eecccceEEEEeccccccccchhHH--HHHHHhhccceEEEEEcCeEEEEcccceeeecccchhhhhhh--HHHH
Confidence                 0000001222222222211110000  00001111111   1234555555666666665421110000  0000


Q ss_pred             eeEEE--EecCCCcEEEEEeCCCcEEEEecccceeeeeecccccCEEEEEEeCCCCEEEEEeCCCcEEEEEcCCcccccc
Q 001415          830 ATFLA--FHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKN  907 (1082)
Q Consensus       830 v~~l~--~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~  907 (1082)
                      |.-+.  =-|.+..-|+.|..||.|+-.-+.+.-++. +......|.|+..+...+.||+..+.++..++|+.+++..  
T Consensus       415 iRYikV~GGP~gREgL~vGlknGqV~kiF~dN~~PiL-l~~~~tAvrClDINA~R~kLAvVDD~~~c~v~DI~t~elL--  491 (1081)
T KOG1538|consen  415 IRYIKVIGGPPGREGLLVGLKNGQVLKIFVDNLFPIL-LLKQATAVRCLDINASRKKLAVVDDNDTCLVYDIDTKELL--  491 (1081)
T ss_pred             HHhhhhhcCCCCcceeEEEecCCcEEEEEecCCchhh-eecccceeEEeeccCCcceEEEEccCCeEEEEEccCCceE--
Confidence            11111  112255678889999987655455433332 2335578999999999999999999999999999997642  


Q ss_pred             eeeeccCCCCCCCCCCcEEEEcCCCcEEE-EEecCeEEE
Q 001415          908 RFLQIPTGRTPTAQSDTRVQFHQDQIHFL-VVHETQLAI  945 (1082)
Q Consensus       908 ~~~~~~~~~~~~~~~v~~~~fspdg~~l~-~~~d~~i~i  945 (1082)
                        ++.        .++.+++|.....-+. .+..|.+.|
T Consensus       492 --~QE--------pg~nSV~wNT~~E~MlcfT~~g~L~V  520 (1081)
T KOG1538|consen  492 --FQE--------PGANSVAWNTQCEDMLCFTGGGYLNV  520 (1081)
T ss_pred             --eec--------CCCceEEeeccccceEEEecCCceEE
Confidence              222        3467889987644433 355565544

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.91  E-value=1e-23  Score=195.99  Aligned_cols=265  Identities=18%  Similarity=0.240  Sum_probs=206.3

Q ss_pred             cccCCCCceeEEEEecCCCeEEEEeCCCeEEEEEccCCceeeEEEEeeccccCeeEEEecC--CCCceEEEEEeCCCcEE
Q 001415          415 LVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSH--PNKQLCVITCGDDKTIK  492 (1082)
Q Consensus       415 ~~~~h~~~V~~l~~spdg~~las~~~d~~v~iwd~~~~~~~~~~~~~~~h~~~V~~l~fs~--dg~~~~l~s~s~d~~i~  492 (1082)
                      +...|.+.|..+...--|++||+++.|++|+|+.+........+.+|.||.++|+.++|..  -|.  +||+++.||.|.
T Consensus         6 idt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~--iLAScsYDgkVI   83 (299)
T KOG1332|consen    6 IDTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGT--ILASCSYDGKVI   83 (299)
T ss_pred             hhhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCc--EeeEeecCceEE
Confidence            4678999999999999999999999999999999998877667779999999999999977  677  899999999999


Q ss_pred             EEEccCCc--eeEEeecCCcCeEEEeeeecCCceEEEEecCCCcEEEEecCCCCc---eeeecCCCCceEEEEEccC---
Q 001415          493 VWDATNGA--KQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGS---RVDYEAPGRWCTTMAYSAD---  564 (1082)
Q Consensus       493 vwd~~~~~--~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~---~~~~~~~~~~v~~~~~s~d---  564 (1082)
                      ||.-.+|+  .......|...|++++|.|..-|-.|++++.||.|.+.+.+....   ......|.-.|.+++|.|-   
T Consensus        84 iWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~  163 (299)
T KOG1332|consen   84 IWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAP  163 (299)
T ss_pred             EEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCC
Confidence            99977774  345667899999999999999999999999999999999887622   2345567778899999886   


Q ss_pred             CCeeeecccccceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEEecCCCCCCcCeEEEcCCC----CEEEEEECCC
Q 001415          565 GTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDG----CLLAVSTNDN  640 (1082)
Q Consensus       565 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~dg----~~l~~~~~dg  640 (1082)
                      |..+-.+.          ...-..|++|+.|..|+||+...++-+..-...+|...|+.++|.|.-    .+|++++.||
T Consensus       164 g~~~~~~~----------~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg  233 (299)
T KOG1332|consen  164 GSLVDQGP----------AAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDG  233 (299)
T ss_pred             ccccccCc----------ccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCC
Confidence            32110000          001247999999999999999887543322233445589999999953    5799999999


Q ss_pred             cEEEEEecCCcc--ceeecccccccccccccccCCCCccccCCCCceeeeccCCceeEEEec
Q 001415          641 GIKILATSDGIR--LLRTFENLAYDASRTSENSKNGDVRSLADVKPRITEESNDKSKVWKLT  700 (1082)
Q Consensus       641 ~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~iw~~~  700 (1082)
                      ++.||.......  ....+........  .+.|       +..|..|++++.|+.+.+|.-.
T Consensus       234 ~viIwt~~~e~e~wk~tll~~f~~~~w--~vSW-------S~sGn~LaVs~GdNkvtlwke~  286 (299)
T KOG1332|consen  234 TVIIWTKDEEYEPWKKTLLEEFPDVVW--RVSW-------SLSGNILAVSGGDNKVTLWKEN  286 (299)
T ss_pred             cEEEEEecCccCcccccccccCCcceE--EEEE-------eccccEEEEecCCcEEEEEEeC
Confidence            999998763311  1222232222222  4445       8899999999999999999865

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.91  E-value=4.7e-20  Score=203.23  Aligned_cols=252  Identities=17%  Similarity=0.248  Sum_probs=205.0

Q ss_pred             CCCCCceEEEEecCCCeEEEEEcCCCcEEEEEccccc-eeeeeceeeeccCCCCcccccccccCCCCceeEEEEecCCCe
Q 001415          356 NQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRE-RLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSL  434 (1082)
Q Consensus       356 ~h~~~v~~~~~spdg~~llasgs~dg~i~iwd~~~~~-~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~  434 (1082)
                      .|+..-+.++|.|+|. +|.+++.||.|++|+..... ...                   .+.-++..|.+++.  ++.+
T Consensus        11 aht~G~t~i~~d~~ge-fi~tcgsdg~ir~~~~~sd~e~P~-------------------ti~~~g~~v~~ia~--~s~~   68 (933)
T KOG1274|consen   11 AHTGGLTLICYDPDGE-FICTCGSDGDIRKWKTNSDEEEPE-------------------TIDISGELVSSIAC--YSNH   68 (933)
T ss_pred             hccCceEEEEEcCCCC-EEEEecCCCceEEeecCCcccCCc-------------------hhhccCceeEEEee--cccc
Confidence            5888899999999999 58888999999999986542 111                   12236777877776  5569


Q ss_pred             EEEEeCCCeEEEEEccCCceeeEEEEeeccccCeeEEEecCCCCceEEEEEeCCCcEEEEEccCCceeEEeecCCcCeEE
Q 001415          435 FGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYS  514 (1082)
Q Consensus       435 las~~~d~~v~iwd~~~~~~~~~~~~~~~h~~~V~~l~fs~dg~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~  514 (1082)
                      |++|+.+++|.+|...+++.-.   .+...+-++.+++|+.+|+  ++|.||.|-.|++-++.+....+.+++|.++|.+
T Consensus        69 f~~~s~~~tv~~y~fps~~~~~---iL~Rftlp~r~~~v~g~g~--~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~  143 (933)
T KOG1274|consen   69 FLTGSEQNTVLRYKFPSGEEDT---ILARFTLPIRDLAVSGSGK--MIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQ  143 (933)
T ss_pred             eEEeeccceEEEeeCCCCCccc---eeeeeeccceEEEEecCCc--EEEeecCceeEEEEeccccchheeecccCCceee
Confidence            9999999999999999887543   2334466899999999999  8999999999999999999999999999999999


Q ss_pred             EeeeecCCceEEEEecCCCcEEEEecCCCCceeeecCCCCceEEEEEccCCCeeeecccccceeEEEecCCCCEEEEEeC
Q 001415          515 VCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGD  594 (1082)
Q Consensus       515 ~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~  594 (1082)
                      +.++|..  .+|++.+-||.|++||+.++.....+..-...-..             .....+..++|+|++..+++.+.
T Consensus       144 l~~~p~~--~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~-------------~~s~i~~~~aW~Pk~g~la~~~~  208 (933)
T KOG1274|consen  144 LSYDPKG--NFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEF-------------ILSRICTRLAWHPKGGTLAVPPV  208 (933)
T ss_pred             eeEcCCC--CEEEEEecCceEEEEEcccchhhhhcccCCccccc-------------cccceeeeeeecCCCCeEEeecc
Confidence            9987654  79999999999999999987665544432210000             00124455778888778999999


Q ss_pred             CCeEEEEECCCcceEEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEecC
Q 001415          595 DFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSD  649 (1082)
Q Consensus       595 dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~iwd~~~  649 (1082)
                      |+.|.+|+..+.+....+........+..++|+|+|+|||+++.+|.|.|||..+
T Consensus       209 d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t  263 (933)
T KOG1274|consen  209 DNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDT  263 (933)
T ss_pred             CCeEEEEccCCceeheeecccccccceEEEEEcCCCcEEeeeccCCcEEEEeccc
Confidence            9999999999999988887666555689999999999999999999999999986

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.91  E-value=9.4e-21  Score=208.63  Aligned_cols=516  Identities=12%  Similarity=0.134  Sum_probs=316.7

Q ss_pred             CCceEEEEecCCCeEEEEEcCCCcEEEEEccccceeeeeceeeeccCCCCcccccccccCCCCceeEEEEecCC---CeE
Q 001415          359 SSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDG---SLF  435 (1082)
Q Consensus       359 ~~v~~~~~spdg~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg---~~l  435 (1082)
                      ..-....||+|+++|+..  .+..|.||.+.||.++.                   .+.+|..++..+.+.|..   .++
T Consensus        17 ~~~~~avfSnD~k~l~~~--~~~~V~VyS~~Tg~~i~-------------------~l~~~~a~l~s~~~~~~~~~~~~~   75 (792)
T KOG1963|consen   17 GNKSPAVFSNDAKFLFLC--TGNFVKVYSTATGECIT-------------------SLEDHTAPLTSVIVLPSSENANYL   75 (792)
T ss_pred             ceecccccccCCcEEEEe--eCCEEEEEecchHhhhh-------------------hcccccCccceeeecCCCccceEE
Confidence            333445799999975443  47899999999999887                   388999999999999854   477


Q ss_pred             EEEeCCCeEEEEEccCCceeeEEEEeeccccCeeEEEec----CCCCceEEEEEeCCCcEEEEEccCCceeE--------
Q 001415          436 GVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFS----HPNKQLCVITCGDDKTIKVWDATNGAKQY--------  503 (1082)
Q Consensus       436 as~~~d~~v~iwd~~~~~~~~~~~~~~~h~~~V~~l~fs----~dg~~~~l~s~s~d~~i~vwd~~~~~~~~--------  503 (1082)
                      .+++.+|.|++||...+..++   ++..+ .++..+.+.    ..... +.++...-..+.-...+.+....        
T Consensus        76 ~~~sl~G~I~vwd~~~~~Llk---t~~~~-~~v~~~~~~~~~a~~s~~-~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~  150 (792)
T KOG1963|consen   76 IVCSLDGTIRVWDWSDGELLK---TFDNN-LPVHALVYKPAQADISAN-VYVSVEDYSILTTFSKKLSKQSSRFVLATFD  150 (792)
T ss_pred             EEEecCccEEEecCCCcEEEE---EEecC-CceeEEEechhHhCccce-eEeecccceeeeecccccccceeeeEeeecc
Confidence            799999999999999998776   33322 223333332    11110 11221111111111111111111        


Q ss_pred             -----EeecCCcCeEEEeeeecCCceEEEEecCCCcEEEEecCCCCceeeecCCCCceEEEEEccCCCeeeeccccccee
Q 001415          504 -----IFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLG  578 (1082)
Q Consensus       504 -----~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~i~  578 (1082)
                           .+..|.. -.++...+.+   .+.....+..+.+|+..... .... .               +-..-++...+.
T Consensus       151 ~~~~d~~~~~~~-~~~I~~~~~g---e~~~i~~~~~~~~~~v~~~~-~~~~-~---------------~~~~~~Htf~~t  209 (792)
T KOG1963|consen  151 SAKGDFLKEHQE-PKSIVDNNSG---EFKGIVHMCKIHIYFVPKHT-KHTS-S---------------RDITVHHTFNIT  209 (792)
T ss_pred             ccchhhhhhhcC-CccEEEcCCc---eEEEEEEeeeEEEEEecccc-eeec-c---------------chhhhhhcccce
Confidence                 1122222 1233333332   23333345567777766533 1100 0               001112222367


Q ss_pred             EEEecCCCCEEEEEeCCCeEEEEECCC--cceEEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEecCCccceee
Q 001415          579 VVQFDTTKNRFLAAGDDFSIKFWDMDS--VQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRT  656 (1082)
Q Consensus       579 ~~~~~~~~~~l~~~~~dg~i~iwd~~~--~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~iwd~~~~~~~~~~  656 (1082)
                      +.+++|.+++++++..||.|.+|.--.  +.....-..|-|...|.+++|+++|.+|++|+..|.+.+|.+.++.+  +.
T Consensus       210 ~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~k--qf  287 (792)
T KOG1963|consen  210 CVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGKK--QF  287 (792)
T ss_pred             eEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccceEEEEEeecCCCc--cc
Confidence            788888888999999999999996433  22222222333445799999999999999999999999999998842  22


Q ss_pred             cccccccccccccccCCCCccccCCCCceeeeccCCceeEEEecccCCCCcccccccc----CcccccceeEEEEccCCc
Q 001415          657 FENLAYDASRTSENSKNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLP----ENLRATKISRLIFTNSGN  732 (1082)
Q Consensus       657 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~----~~~~~~~i~~~~~s~~~~  732 (1082)
                      +......+         .++..+||+...+....|+.|.+-...++.....+..+..+    .....+-.+.+.++|..+
T Consensus       288 LPRLgs~I---------~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~  358 (792)
T KOG1963|consen  288 LPRLGSPI---------LHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTN  358 (792)
T ss_pred             ccccCCee---------EEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCCCC
Confidence            22212222         22334899999999999999999988776555555544443    122345567889999888


Q ss_pred             eeeecccCCeEEEeeccccccCCCCCcccccCccccCCCCcceeecccCCCCCCCCccEEEeecCCCeEEEee-------
Q 001415          733 AILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-------  805 (1082)
Q Consensus       733 ~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~l~~~s-------  805 (1082)
                      .++..+..+.+.+||+........-      .+...+...+..        .+.-.++.++.+..|.++++..       
T Consensus       359 ~~vln~~~g~vQ~ydl~td~~i~~~------~v~~~n~~~~~~--------n~~v~itav~~~~~gs~maT~E~~~d~~~  424 (792)
T KOG1963|consen  359 SLVLNGHPGHVQFYDLYTDSTIYKL------QVCDENYSDGDV--------NIQVGITAVARSRFGSWMATLEARIDKFN  424 (792)
T ss_pred             ceeecCCCceEEEEeccccceeeeE------EEEeecccCCcc--------eeEEeeeeehhhccceEEEEeeeeehhhh
Confidence            8999999999999998654321100      011111111110        1345678888888899999874       


Q ss_pred             --CC--eEEEEecCCCeeE----E-EECCCCCCeeEEEEecCCCc-EEEEEeCCCcEEEEecccc----------eeeee
Q 001415          806 --GG--KISLFNMMTFKTM----A-TFMPPPPAATFLAFHPQDNN-IIAIGMDDSSIQIYNVRVD----------EVKSK  865 (1082)
Q Consensus       806 --dg--~i~iwd~~~~~~~----~-~~~~~~~~v~~l~~sp~~~~-~lasg~~dg~v~iwd~~~~----------~~~~~  865 (1082)
                        ||  .+++|.......-    . ....|...+...++.+.... ..++++.||.++||-+...          .|...
T Consensus       425 ~~~~e~~LKFW~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i  504 (792)
T KOG1963|consen  425 FFDGEVSLKFWQYNPNSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAI  504 (792)
T ss_pred             ccCceEEEEEEEEcCCcceeEEEEEEecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccceEEeee
Confidence              33  3889976643322    2 23467766666666543444 7899999999999988432          23333


Q ss_pred             ecccccCEEEEEEeCCCCEEEEEeCCCcEEEEEcCCc-ccccceeeeccCCCCCCCCCCcEEEEc---CCCcEEEEEecC
Q 001415          866 LKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGW-EKQKNRFLQIPTGRTPTAQSDTRVQFH---QDQIHFLVVHET  941 (1082)
Q Consensus       866 l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~fs---pdg~~l~~~~d~  941 (1082)
                      -.-|..++++++|+.||..|+ ++.|++|.+||..+. +...     .. +...  ..+..+.|.   +....++....+
T Consensus       505 ~sy~k~~i~a~~fs~dGslla-~s~~~~Itiwd~~~~~~l~~-----~~-~~~~--~~~~~~~~~~~~~~~~~~~~~~~~  575 (792)
T KOG1963|consen  505 GSYHKTPITALCFSQDGSLLA-VSFDDTITIWDYDTKNELLC-----TE-GSRN--WPIAELLFTAQTQNDGALVHATQQ  575 (792)
T ss_pred             eccccCcccchhhcCCCcEEE-EecCCEEEEecCCChhhhhc-----cc-cccc--cchHhHhhhcccccccceeeccCc
Confidence            334788999999999996555 567889999999883 2111     11 1100  112222222   222333445678


Q ss_pred             eEEEEEccCcceee
Q 001415          942 QLAIFETTKLECVK  955 (1082)
Q Consensus       942 ~i~iwd~~~~~~~~  955 (1082)
                      .+.+|++.++...-
T Consensus       576 ~l~~WNll~~~l~w  589 (792)
T KOG1963|consen  576 RLSVWNLLSMSLIW  589 (792)
T ss_pred             eEehHhhhhhheec
Confidence            89999998777655

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.91  E-value=3e-22  Score=193.00  Aligned_cols=295  Identities=17%  Similarity=0.220  Sum_probs=220.9

Q ss_pred             eeEEEEecCCCeEEEEeCCCeEEEEEccCCceeeEEEEeeccccCeeEEEecCCCCceEEEEEeCCCcEEEEEccCCcee
Q 001415          423 VNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQ  502 (1082)
Q Consensus       423 V~~l~~spdg~~las~~~d~~v~iwd~~~~~~~~~~~~~~~h~~~V~~l~fs~dg~~~~l~s~s~d~~i~vwd~~~~~~~  502 (1082)
                      -.|+.||+.|.+||+|+.||.|.|||+.+...-+   .+.+|..+|.+++||+||+  .|+|+|.|..|.+||+..|.++
T Consensus        26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar---~lsaH~~pi~sl~WS~dgr--~LltsS~D~si~lwDl~~gs~l  100 (405)
T KOG1273|consen   26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIAR---MLSAHVRPITSLCWSRDGR--KLLTSSRDWSIKLWDLLKGSPL  100 (405)
T ss_pred             cceEEeccCcceeeeeccCCcEEEEEccccchhh---hhhccccceeEEEecCCCC--EeeeecCCceeEEEeccCCCce
Confidence            7899999999999999999999999999977544   6889999999999999999  7999999999999999999999


Q ss_pred             EEeecCCcCeEEEeeeecCCceEEEEecCCCcEEEEecCCCCceeeecCCCCceEEEEEccCCCeeeecccccceeEEEe
Q 001415          503 YIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQF  582 (1082)
Q Consensus       503 ~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~i~~~~~  582 (1082)
                      +.+. ...+|+.+.|+|......+++-- +..-.+-++.....           ..+..++++..-.      .-.+..|
T Consensus       101 ~rir-f~spv~~~q~hp~k~n~~va~~~-~~sp~vi~~s~~~h-----------~~Lp~d~d~dln~------sas~~~f  161 (405)
T KOG1273|consen  101 KRIR-FDSPVWGAQWHPRKRNKCVATIM-EESPVVIDFSDPKH-----------SVLPKDDDGDLNS------SASHGVF  161 (405)
T ss_pred             eEEE-ccCccceeeeccccCCeEEEEEe-cCCcEEEEecCCce-----------eeccCCCcccccc------ccccccc
Confidence            9888 67899999999987755555433 32233333332111           1222333332111      1122358


Q ss_pred             cCCCCEEEEEeCCCeEEEEECCCcceEEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEecCCccceeecccccc
Q 001415          583 DTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAY  662 (1082)
Q Consensus       583 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~  662 (1082)
                      ++.|+++++|...|.+.++|..+.+++..++... ...|..+.++..|++++..+.|..|+.|++..-...         
T Consensus       162 dr~g~yIitGtsKGkllv~~a~t~e~vas~rits-~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~---------  231 (405)
T KOG1273|consen  162 DRRGKYIITGTSKGKLLVYDAETLECVASFRITS-VQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDE---------  231 (405)
T ss_pred             cCCCCEEEEecCcceEEEEecchheeeeeeeech-heeeeEEEEeccCcEEEEecCCceEEEEehhhhccc---------
Confidence            8889999999999999999999999998887554 236889999999999999999999999987532000         


Q ss_pred             cccccccccCCCCccccCCCCceeeeccCCceeEEEecccCCCCccccccccCcccccceeEEEEccCCceeeecccCCe
Q 001415          663 DASRTSENSKNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAI  742 (1082)
Q Consensus       663 ~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~  742 (1082)
                                                +.++.+.              .        ..                      
T Consensus       232 --------------------------~r~~e~e--------------~--------~~----------------------  241 (405)
T KOG1273|consen  232 --------------------------GRDGEVE--------------P--------EH----------------------  241 (405)
T ss_pred             --------------------------CccCCcC--------------h--------hH----------------------
Confidence                                      0000000              0        00                      


Q ss_pred             EEEeeccccccCCCCCcccccCccccCCCCcceeecccCCCCCCCCccEEEeecCCCeEEEeeC--CeEEEEecCCCeeE
Q 001415          743 HLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASG--GKISLFNMMTFKTM  820 (1082)
Q Consensus       743 i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~l~~~sd--g~i~iwd~~~~~~~  820 (1082)
                                             ++-|+             -....-.+++||.+|.|+++++.  ..++||.-..|..+
T Consensus       242 -----------------------K~qDv-------------VNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLV  285 (405)
T KOG1273|consen  242 -----------------------KLQDV-------------VNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIGSLV  285 (405)
T ss_pred             -----------------------HHHHH-------------HhhhhhhheeecCCccEEEeccccceeEEEEecCCccee
Confidence                                   00000             02334457889999999998873  66999999999999


Q ss_pred             EEECCCC-CCeeEEEEecCCCcEEEEEeCCCcEEEEeccc
Q 001415          821 ATFMPPP-PAATFLAFHPQDNNIIAIGMDDSSIQIYNVRV  859 (1082)
Q Consensus       821 ~~~~~~~-~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~  859 (1082)
                      +.+.+.. .....+.|+| -...+++- ..|.|++|....
T Consensus       286 KILhG~kgE~l~DV~whp-~rp~i~si-~sg~v~iw~~~~  323 (405)
T KOG1273|consen  286 KILHGTKGEELLDVNWHP-VRPIIASI-ASGVVYIWAVVQ  323 (405)
T ss_pred             eeecCCchhheeeccccc-ceeeeeec-cCCceEEEEeec
Confidence            9999888 4578899999 67677766 788999998653

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.90  E-value=4.6e-22  Score=192.22  Aligned_cols=272  Identities=19%  Similarity=0.185  Sum_probs=205.3

Q ss_pred             CCCCceEEEEecCCCeEEEEEcCCCcEEEEEccccceeeeeceeeeccCCCCcccccccccCCCCceeEEEEecCCCeEE
Q 001415          357 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFG  436 (1082)
Q Consensus       357 h~~~v~~~~~spdg~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la  436 (1082)
                      ..+.|..|.|+|.+.. |++++-||++++||+.......                    .-.|..++.+++|-+ ...++
T Consensus        12 P~d~IS~v~f~~~~~~-LLvssWDgslrlYdv~~~~l~~--------------------~~~~~~plL~c~F~d-~~~~~   69 (323)
T KOG1036|consen   12 PEDGISSVKFSPSSSD-LLVSSWDGSLRLYDVPANSLKL--------------------KFKHGAPLLDCAFAD-ESTIV   69 (323)
T ss_pred             ChhceeeEEEcCcCCc-EEEEeccCcEEEEeccchhhhh--------------------heecCCceeeeeccC-CceEE
Confidence            4688999999999996 5556799999999998875443                    345888999999987 56788


Q ss_pred             EEeCCCeEEEEEccCCceeeEEEEeeccccCeeEEEecCCCCceEEEEEeCCCcEEEEEccCCceeEEeecCCcCeEEEe
Q 001415          437 VAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVC  516 (1082)
Q Consensus       437 s~~~d~~v~iwd~~~~~~~~~~~~~~~h~~~V~~l~fs~dg~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~  516 (1082)
                      +|+.||.|+.+|+.++....    +..|..+|.||.+++...  .+++||.|++|++||.+.......+. ....|.++.
T Consensus        70 ~G~~dg~vr~~Dln~~~~~~----igth~~~i~ci~~~~~~~--~vIsgsWD~~ik~wD~R~~~~~~~~d-~~kkVy~~~  142 (323)
T KOG1036|consen   70 TGGLDGQVRRYDLNTGNEDQ----IGTHDEGIRCIEYSYEVG--CVISGSWDKTIKFWDPRNKVVVGTFD-QGKKVYCMD  142 (323)
T ss_pred             EeccCceEEEEEecCCccee----eccCCCceEEEEeeccCC--eEEEcccCccEEEEeccccccccccc-cCceEEEEe
Confidence            99999999999999987654    778999999999998777  69999999999999998766666655 344788876


Q ss_pred             eeecCCceEEEEecCCCcEEEEecCCCCceeeecCCCCceEEEEEccCCCeeeecccccceeEEEecCCCCEEEEEeCCC
Q 001415          517 PHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDF  596 (1082)
Q Consensus       517 ~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg  596 (1082)
                      ..    ++.|+.|+.|..+.+||+++...........-                   +-.+.++++-|++.-+++++-||
T Consensus       143 v~----g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~l-------------------kyqtR~v~~~pn~eGy~~sSieG  199 (323)
T KOG1036|consen  143 VS----GNRLVVGTSDRKVLIYDLRNLDEPFQRRESSL-------------------KYQTRCVALVPNGEGYVVSSIEG  199 (323)
T ss_pred             cc----CCEEEEeecCceEEEEEcccccchhhhccccc-------------------eeEEEEEEEecCCCceEEEeecc
Confidence            53    35799999999999999998665442221110                   11344455555555788999999


Q ss_pred             eEEEEECCCc----ceEEEEecCCC-------CCCcCeEEEcCCCCEEEEEECCCcEEEEEecCCccceeeccccccccc
Q 001415          597 SIKFWDMDSV----QLLTSIDADGG-------LPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDAS  665 (1082)
Q Consensus       597 ~i~iwd~~~~----~~~~~~~~~~~-------~~~i~~~~~s~dg~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~  665 (1082)
                      .|.+=.++..    +....++.|..       ..+|++++|+|--..+++|+.||.|.+||+.+. +.+..+......+.
T Consensus       200 RVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~r-Krl~q~~~~~~SI~  278 (323)
T KOG1036|consen  200 RVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNR-KRLKQLAKYETSIS  278 (323)
T ss_pred             eEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccceEEecCCCceEEEccCcch-hhhhhccCCCCceE
Confidence            9888666554    22333333321       236899999999889999999999999999877 34444444333333


Q ss_pred             ccccccCCCCccccCCCCceeeecc
Q 001415          666 RTSENSKNGDVRSLADVKPRITEES  690 (1082)
Q Consensus       666 ~~~~~~~~~~~~~s~~~~~l~~~~~  690 (1082)
                        +++|       +.+|..||+++.
T Consensus       279 --slsf-------s~dG~~LAia~s  294 (323)
T KOG1036|consen  279 --SLSF-------SMDGSLLAIASS  294 (323)
T ss_pred             --EEEe-------ccCCCeEEEEec
Confidence              6666       889999988765

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.90  E-value=4e-22  Score=202.27  Aligned_cols=291  Identities=13%  Similarity=0.204  Sum_probs=224.1

Q ss_pred             CCcCeEEEcCCCCEEEEEECCCcEEEEEecCCccceeecccccccccccccccCCCCccccCCCCceeeeccCCceeEEE
Q 001415          619 PASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKNGDVRSLADVKPRITEESNDKSKVWK  698 (1082)
Q Consensus       619 ~~i~~~~~s~dg~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~iw~  698 (1082)
                      ..|+++.|+|....|++++.|+.++||.+......  .+.         ++.+                           
T Consensus       214 ~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~--~lq---------S~~l---------------------------  255 (514)
T KOG2055|consen  214 GGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNP--KLQ---------SIHL---------------------------  255 (514)
T ss_pred             CCceEEEecCCCceEEEecCCCcEEEEEecCccCh--hhe---------eeee---------------------------
Confidence            46999999999999999999999999987543111  000         1111                           


Q ss_pred             ecccCCCCccccccccCcccccceeEEEEccCCc-eeeecccCCeEEEeeccccccCCCCCcccccCccccCCCCcceee
Q 001415          699 LTELSEPNQCRSLRLPENLRATKISRLIFTNSGN-AILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMT  777 (1082)
Q Consensus       699 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~-~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  777 (1082)
                                         ...+|.+..|.|+|. .+++++....++.||+...+..+-.                    
T Consensus       256 -------------------~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~k~~--------------------  296 (514)
T KOG2055|consen  256 -------------------EKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKVTKLK--------------------  296 (514)
T ss_pred             -------------------ccCccceeeecCCCceEEEecccceEEEEeecccccccccc--------------------
Confidence                               456788999999998 7888888899999987644332211                    


Q ss_pred             cccCCCCCCCCccEEEeecCCCeEEEee-CCeEEEEecCCCeeEEEECCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEe
Q 001415          778 NDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYN  856 (1082)
Q Consensus       778 ~~~~~~~~~~~i~~l~~s~dg~~l~~~s-dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd  856 (1082)
                        .........+..+.+|+++++|+..+ .|.|.+....+++.+.++. ..+.|..++|+. +++.|++.+.+|.|++||
T Consensus       297 --~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~K-ieG~v~~~~fsS-dsk~l~~~~~~GeV~v~n  372 (514)
T KOG2055|consen  297 --PPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFK-IEGVVSDFTFSS-DSKELLASGGTGEVYVWN  372 (514)
T ss_pred             --CCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheee-eccEEeeEEEec-CCcEEEEEcCCceEEEEe
Confidence              11111245678899999999999888 5999999999999998887 567899999999 778888888899999999


Q ss_pred             cccceeeeeeccccc-CEEEEEEeCCCCEEEEEeCCCcEEEEEcCCcccc-cceeeeccCCCCCCCCCCcEEEEcCCCcE
Q 001415          857 VRVDEVKSKLKGHSK-RITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQ-KNRFLQIPTGRTPTAQSDTRVQFHQDQIH  934 (1082)
Q Consensus       857 ~~~~~~~~~l~~h~~-~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~-~~~~~~~~~~~~~~~~~v~~~~fspdg~~  934 (1082)
                      +....++.++....+ .-++++.|++|.+||+|+..|.|.|||.++.-.. ..+.+.....   ....|+.+.|++|++.
T Consensus       373 l~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dN---Ltt~Itsl~Fn~d~qi  449 (514)
T KOG2055|consen  373 LRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDN---LTTAITSLQFNHDAQI  449 (514)
T ss_pred             cCCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhh---hheeeeeeeeCcchhh
Confidence            999999888863321 2356888899999999999999999997762111 0111111111   1257899999999999


Q ss_pred             EEEE---ecCeEEEEEccCcceeeeeccCC-CCcceeEEEEcCCCceEEEeecCCcEEEEecC
Q 001415          935 FLVV---HETQLAIFETTKLECVKQWVPRE-SSAPITHATFSCDSQLVYACFLDATVCVFSAA  993 (1082)
Q Consensus       935 l~~~---~d~~i~iwd~~~~~~~~~~~~~~-h~~~i~~l~~s~dg~~l~t~s~dg~v~vwd~~  993 (1082)
                      ||.+   ....+++-.+.+......|.... .-+.|+|++|||.|.+||.|.++|.|.+|.+.
T Consensus       450 LAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL~  512 (514)
T KOG2055|consen  450 LAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKLH  512 (514)
T ss_pred             hhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEeecCCCceeeEeec
Confidence            9984   45789999999888888887543 24679999999999999999999999999864

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.90  E-value=8.3e-23  Score=208.41  Aligned_cols=282  Identities=12%  Similarity=0.165  Sum_probs=223.0

Q ss_pred             cccceeEEEEccCCceeeecccCCeEEEeeccccccCCCCCcccccCccccCCCCcceeecccCCCCCCCCccEEEeecC
Q 001415          718 RATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKN  797 (1082)
Q Consensus       718 ~~~~i~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~d  797 (1082)
                      |..-|.+++++...+.+++++. |.|+|||+....-..                   .+. .+........|+++.+.||
T Consensus       418 HGEvVcAvtIS~~trhVyTgGk-gcVKVWdis~pg~k~-------------------Pvs-qLdcl~rdnyiRSckL~pd  476 (705)
T KOG0639|consen  418 HGEVVCAVTISNPTRHVYTGGK-GCVKVWDISQPGNKS-------------------PVS-QLDCLNRDNYIRSCKLLPD  476 (705)
T ss_pred             cCcEEEEEEecCCcceeEecCC-CeEEEeeccCCCCCC-------------------ccc-cccccCcccceeeeEecCC
Confidence            7788888999988887777664 689999987431100                   000 0111125678999999999


Q ss_pred             CCeEEEeeC-CeEEEEecCCCeeE--EEECCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEecccceeeeeecccccCEE
Q 001415          798 DSYVMSASG-GKISLFNMMTFKTM--ATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRIT  874 (1082)
Q Consensus       798 g~~l~~~sd-g~i~iwd~~~~~~~--~~~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~  874 (1082)
                      |+.|++|+. .++.|||+..-...  ..+......+.+++.+| |.++.++++.||.|.|||+.+...++.|+||.+.+.
T Consensus       477 grtLivGGeastlsiWDLAapTprikaeltssapaCyALa~sp-DakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGas  555 (705)
T KOG0639|consen  477 GRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISP-DAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGAS  555 (705)
T ss_pred             CceEEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCC-ccceeeeeccCCcEEEEEcccceeeecccCCCCCce
Confidence            999999986 78999999865443  33444445688899999 899999999999999999999999999999999999


Q ss_pred             EEEEeCCCCEEEEEeCCCcEEEEEcCCcccccceeeeccCCCCCCCCCCcEEEEcCCCcEEEEEe-cCeEEEEEccCcce
Q 001415          875 GLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVH-ETQLAIFETTKLEC  953 (1082)
Q Consensus       875 ~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~~-d~~i~iwd~~~~~~  953 (1082)
                      ||.+++||..|-||+-|.+||-||+..+......-         ....|.++-++|.+.+|+++. .+.+.|......+.
T Consensus       556 cIdis~dGtklWTGGlDntvRcWDlregrqlqqhd---------F~SQIfSLg~cP~~dWlavGMens~vevlh~skp~k  626 (705)
T KOG0639|consen  556 CIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQHD---------FSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPEK  626 (705)
T ss_pred             eEEecCCCceeecCCCccceeehhhhhhhhhhhhh---------hhhhheecccCCCccceeeecccCcEEEEecCCccc
Confidence            99999999999999999999999999865322111         115688999999999999974 56788877654443


Q ss_pred             eeeeccCCCCcceeEEEEcCCCceEEEeecCCcEEEEecCCceeeeeeCCCeecCCCCCCCCceeeEEEEeCCCCCeEEE
Q 001415          954 VKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFAL 1033 (1082)
Q Consensus       954 ~~~~~~~~h~~~i~~l~~s~dg~~l~t~s~dg~v~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~~~~~~~d~~~l~s 1033 (1082)
                         +..+.|.+.|.++.|++.|+++++.+.|+.+..|...-|..+....       .  .  ..+++|..+. |.+++++
T Consensus       627 ---yqlhlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqsk-------E--~--SsVlsCDIS~-ddkyIVT  691 (705)
T KOG0639|consen  627 ---YQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSK-------E--S--SSVLSCDISF-DDKYIVT  691 (705)
T ss_pred             ---eeecccccEEEEEEecccCceeeecCchhhhhhccCccccceeecc-------c--c--Ccceeeeecc-CceEEEe
Confidence               3445789999999999999999999999999999999998886544       1  1  2345777776 4689999


Q ss_pred             EecCCcEEEEcc
Q 001415         1034 GLSDGGVHVFEP 1045 (1082)
Q Consensus      1034 ~~~dg~v~vW~~ 1045 (1082)
                      |+.|....||.+
T Consensus       692 GSGdkkATVYeV  703 (705)
T KOG0639|consen  692 GSGDKKATVYEV  703 (705)
T ss_pred             cCCCcceEEEEE
Confidence            999998888875

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.90  E-value=7.2e-23  Score=215.65  Aligned_cols=436  Identities=15%  Similarity=0.147  Sum_probs=273.5

Q ss_pred             EEEec---CCCeEEEEeCCCeEEEEEccCCcee---eEEEEeeccccCeeEEEecCCCCceEEEEEeCCCcEEEEEccCC
Q 001415          426 VIWSP---DGSLFGVAYSRHIVQIYSYHGGDEV---RQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNG  499 (1082)
Q Consensus       426 l~~sp---dg~~las~~~d~~v~iwd~~~~~~~---~~~~~~~~h~~~V~~l~fs~dg~~~~l~s~s~d~~i~vwd~~~~  499 (1082)
                      ..|++   ....||.+.+||.|.++|.....--   +++.....|...|..+.|.| |+. .|++++.|.++++||++++
T Consensus        55 ~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wap-ge~-~lVsasGDsT~r~Wdvk~s  132 (720)
T KOG0321|consen   55 DSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAP-GES-LLVSASGDSTIRPWDVKTS  132 (720)
T ss_pred             ccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCC-Cce-eEEEccCCceeeeeeeccc
Confidence            66766   3457899999999999998754311   22335678999999999999 554 8999999999999999999


Q ss_pred             ceeEE--eecCCcCeEEEeeeecCCceEEEEecCCCcEEEEecCCCCceeeecCCCCceEEEEEccCCCeeeecccccce
Q 001415          500 AKQYI--FEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSL  577 (1082)
Q Consensus       500 ~~~~~--~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~i  577 (1082)
                      +++..  +.||.+.|.++||.+... ..+++|+.||.|.|||++.........             +...++..|.... 
T Consensus       133 ~l~G~~~~~GH~~SvkS~cf~~~n~-~vF~tGgRDg~illWD~R~n~~d~~e~-------------~~~~~~~~~n~~p-  197 (720)
T KOG0321|consen  133 RLVGGRLNLGHTGSVKSECFMPTNP-AVFCTGGRDGEILLWDCRCNGVDALEE-------------FDNRIYGRHNTAP-  197 (720)
T ss_pred             eeecceeecccccccchhhhccCCC-cceeeccCCCcEEEEEEeccchhhHHH-------------HhhhhhccccCCC-
Confidence            98876  899999999999998755 689999999999999987533110000             0000000000000 


Q ss_pred             eEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEEecCCCCCCcCe---EEEcCCCCEEEEEEC-CCcEEEEEecCCccc
Q 001415          578 GVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPR---IRFNKDGCLLAVSTN-DNGIKILATSDGIRL  653 (1082)
Q Consensus       578 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~---~~~s~dg~~l~~~~~-dg~i~iwd~~~~~~~  653 (1082)
                           .|.  .-    ....++-|-.           +.  ..|.+   +.+..|...||+++. |+.|+|||++.....
T Consensus       198 -----tps--kp----~~kr~~k~kA-----------~s--~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~  253 (720)
T KOG0321|consen  198 -----TPS--KP----LKKRIRKWKA-----------AS--NTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTA  253 (720)
T ss_pred             -----CCC--ch----hhcccccccc-----------cc--CceeeeeEEEEEeccceeeeccCCCcceEEEeecccccc
Confidence                 000  00    0001111111           11  12333   556667788888877 999999999876322


Q ss_pred             eeecccccccccccccccCCCCccccCCCCceeeeccCCceeEEEecccCCCCccccccccC-cccccceeEEEEccCCc
Q 001415          654 LRTFENLAYDASRTSENSKNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPE-NLRATKISRLIFTNSGN  732 (1082)
Q Consensus       654 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~s~~~~  732 (1082)
                      .+.-...       ...+                                          +. ....-.+.++.....|.
T Consensus       254 ~r~ep~~-------~~~~------------------------------------------~t~skrs~G~~nL~lDssGt  284 (720)
T KOG0321|consen  254 YRQEPRG-------SDKY------------------------------------------PTHSKRSVGQVNLILDSSGT  284 (720)
T ss_pred             cccCCCc-------ccCc------------------------------------------cCcccceeeeEEEEecCCCC
Confidence            2111100       0000                                          00 00233567778888889


Q ss_pred             eeeecccCCeEEEeeccccccCCCCCcccccCccccCCCCcceeecccCCCCCCCCccEEEeecCCCeEEEee-CCeEEE
Q 001415          733 AILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISL  811 (1082)
Q Consensus       733 ~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~l~~~s-dg~i~i  811 (1082)
                      ++++.+.|+.|++|++......+.+......                     ....-..-..+||+.++++|+ |....+
T Consensus       285 ~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~---------------------~~sf~vks~lSpd~~~l~SgSsd~~ayi  343 (720)
T KOG0321|consen  285 YLFASCTDNSIYFYNMRSLSISPVAEFSGKL---------------------NSSFYVKSELSPDDCSLLSGSSDEQAYI  343 (720)
T ss_pred             eEEEEecCCcEEEEeccccCcCchhhccCcc---------------------cceeeeeeecCCCCceEeccCCCcceee
Confidence            9999999999999998866554433321110                     011112235689999999997 799999


Q ss_pred             EecCCCee-EEEECCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEeccccee--------------eeeecccccCEEEE
Q 001415          812 FNMMTFKT-MATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEV--------------KSKLKGHSKRITGL  876 (1082)
Q Consensus       812 wd~~~~~~-~~~~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~--------------~~~l~~h~~~V~~l  876 (1082)
                      |.+.+.+. ...+.+|...|++++|.|..-.-+|++++|..++||++..+-.              ..++++|.-.+..+
T Consensus       344 w~vs~~e~~~~~l~Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~l~e~~~adk~s~v~~~~~rfk~~~p~~~nv  423 (720)
T KOG0321|consen  344 WVVSSPEAPPALLLGHTREVTTVRWLPSATTPVATCSDDFRVKIWRLSNGLEEIYAADKDSIVYEYSRRFKGHLPQVLNV  423 (720)
T ss_pred             eeecCccCChhhhhCcceEEEEEeeccccCCCceeeccCcceEEEeccCchhhccccccchhhhhhhhhhhccccccccc
Confidence            99987654 4567789999999999996666778889999999999965422              22345555555555


Q ss_pred             EEeCCCCEEEEEeCCCcEEEEEcCCcccccceeeeccCCCCCCCCCCcEEEEcCCCcEEEEE---e--cCeEEEEEccCc
Q 001415          877 AFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV---H--ETQLAIFETTKL  951 (1082)
Q Consensus       877 ~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~---~--d~~i~iwd~~~~  951 (1082)
                      .++-.+.+....  .+..++|...                       ..++..|++.-...+   .  .-.|...+....
T Consensus       424 ~ss~~~t~~~pR--~~~~r~~ssP-----------------------~s~a~~~s~~s~~~~~~~t~qt~~i~~~p~kr~  478 (720)
T KOG0321|consen  424 NSSLRKTYKDPR--EGMNRISSSP-----------------------VSLACSPSGASDDCGYGVTDQTSGIVVFPTKRN  478 (720)
T ss_pred             cccccccccchh--hhccccccCc-----------------------cchhcCcCCcccccCCCcccccccceecchhcc
Confidence            444333322221  3334444322                       334445554444431   1  123444444443


Q ss_pred             ceeeeeccCCCCcceeEEEEcCCCceEEEeec-----------CCcEEEEecCCcee
Q 001415          952 ECVKQWVPRESSAPITHATFSCDSQLVYACFL-----------DATVCVFSAANLKL  997 (1082)
Q Consensus       952 ~~~~~~~~~~h~~~i~~l~~s~dg~~l~t~s~-----------dg~v~vwd~~~~~~  997 (1082)
                      +....-...+|...|+...+++-+..+++++-           ++.+++|.......
T Consensus       479 ~~~ss~~s~~~~~Svs~~d~ss~~s~~~s~SP~~~~~stpp~sets~~s~~s~l~pp  535 (720)
T KOG0321|consen  479 KPSSSRGSGGHLSSVSAEDWSSEKSQLASRSPQKNRGSTPPISETSVNSPNSSLHPP  535 (720)
T ss_pred             CccccccccccccccccCCCccccccccccCcccccCCCCCcCcccccccccccCCc
Confidence            33333333356677777778887778888887           88888887655433

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.90  E-value=4.2e-22  Score=190.04  Aligned_cols=323  Identities=15%  Similarity=0.203  Sum_probs=226.3

Q ss_pred             ecCCCCCceEEEEecCCCeEEEEEcCCCcEEEEEccccceeeeeceeeeccCCCCcccccccccCCCCceeEEEEec-CC
Q 001415          354 TLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP-DG  432 (1082)
Q Consensus       354 ~~~h~~~v~~~~~spdg~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~sp-dg  432 (1082)
                      .-.|.+.|+++.+.+..-+++++|+.||.|.+||++.-.......+-.  ...|....+  ...+|.-.|..+-|-| |.
T Consensus        39 ~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~--k~~c~v~~~--h~~~Hky~iss~~WyP~Dt  114 (397)
T KOG4283|consen   39 VRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIA--KHKCIVAKQ--HENGHKYAISSAIWYPIDT  114 (397)
T ss_pred             eccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhcccee--heeeecccc--CCccceeeeeeeEEeeecC
Confidence            345999999999999665579999999999999997644211100000  001111111  2568999999999999 88


Q ss_pred             CeEEEEeCCCeEEEEEccCCceeeEEEEeeccccCeeEEEecCCCC-ceEEEEEeCCCcEEEEEccCCceeEEeecCCcC
Q 001415          433 SLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNK-QLCVITCGDDKTIKVWDATNGAKQYIFEGHEAP  511 (1082)
Q Consensus       433 ~~las~~~d~~v~iwd~~~~~~~~~~~~~~~h~~~V~~l~fs~dg~-~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~  511 (1082)
                      ..+.+++.|.+++|||..+-+...   .+. -.+.|.+-+|||-.. .-++|+|..|-.|++.|+.+|.+-+++.||.+.
T Consensus       115 GmFtssSFDhtlKVWDtnTlQ~a~---~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~  190 (397)
T KOG4283|consen  115 GMFTSSSFDHTLKVWDTNTLQEAV---DFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDG  190 (397)
T ss_pred             ceeecccccceEEEeecccceeeE---Eee-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCc
Confidence            899999999999999999876543   232 356788888888654 337888888999999999999999999999999


Q ss_pred             eEEEeeeecCCceEEEEecCCCcEEEEecCCCCceeeecCCCCceEEEEEccCCCeeeecccccceeEEEecCCCCEEEE
Q 001415          512 VYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLA  591 (1082)
Q Consensus       512 v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~i~~~~~~~~~~~l~~  591 (1082)
                      |.++.|+|..+ -.|++|+.||.|++||++..                                                
T Consensus       191 vlaV~Wsp~~e-~vLatgsaDg~irlWDiRra------------------------------------------------  221 (397)
T KOG4283|consen  191 VLAVEWSPSSE-WVLATGSADGAIRLWDIRRA------------------------------------------------  221 (397)
T ss_pred             eEEEEeccCce-eEEEecCCCceEEEEEeecc------------------------------------------------
Confidence            99999998776 68999999999999998741                                                


Q ss_pred             EeCCCeEEEEECCCcceEEEEe-cCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEecCCccceeecccccccccccccc
Q 001415          592 AGDDFSIKFWDMDSVQLLTSID-ADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSEN  670 (1082)
Q Consensus       592 ~~~dg~i~iwd~~~~~~~~~~~-~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  670 (1082)
                         .|..++.|...++....++ ...+...+..++|+.+|.++++.+.|..+++|+..+|....+.+......... ..+
T Consensus       222 ---sgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G~ntl~~~g~~~~n~~~-~~~  297 (397)
T KOG4283|consen  222 ---SGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMESGRNTLREFGPIIHNQTT-SFA  297 (397)
T ss_pred             ---cceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEEeecccCcccccccccccccccc-cce
Confidence               1334455544433322222 22334468999999999999999999999999999886555544322111110 112


Q ss_pred             cCCCCccccCCCCceeeeccCCceeEEEecccCCCCccccccccCcccccceeEEEEccCCceeeecccCCeEEEeec
Q 001415          671 SKNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKW  748 (1082)
Q Consensus       671 ~~~~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iw~~  748 (1082)
                      +.   .. +.+...++.--.++.+.++++-++.......       .|...|.+.++.|+-+...++..|+.+..|-.
T Consensus       298 ~~---~~-~~~s~vfv~~p~~~~lall~~~sgs~ir~l~-------~h~k~i~c~~~~~~fq~~~tg~~d~ni~~w~p  364 (397)
T KOG4283|consen  298 VH---IQ-SMDSDVFVLFPNDGSLALLNLLEGSFVRRLS-------THLKRINCAAYRPDFEQCFTGDMNGNIYMWSP  364 (397)
T ss_pred             EE---Ee-ecccceEEEEecCCeEEEEEccCceEEEeee-------cccceeeEEeecCchhhhhccccCCccccccc
Confidence            21   11 2233333333334555555554432222111       16778899999999999999999999999954

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.90  E-value=2.5e-22  Score=204.57  Aligned_cols=215  Identities=15%  Similarity=0.140  Sum_probs=177.2

Q ss_pred             CCceeEEEEecCCCeEEEEeCCCeEEEEEccCCceeeEEEEeeccccCeeEEEecCCCCceEEEEEeCCCcEEEEEcc--
Q 001415          420 GVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDAT--  497 (1082)
Q Consensus       420 ~~~V~~l~~spdg~~las~~~d~~v~iwd~~~~~~~~~~~~~~~h~~~V~~l~fs~dg~~~~l~s~s~d~~i~vwd~~--  497 (1082)
                      .++|.|++-+|+|.+|+.|+..|.|++|.+.+|..+.   .+.+|-..|+|+.|+.||.  +|+|||.||.|.+|++-  
T Consensus        81 Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~---v~~aHYQ~ITcL~fs~dgs--~iiTgskDg~V~vW~l~~l  155 (476)
T KOG0646|consen   81 PGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLN---VLSAHYQSITCLKFSDDGS--HIITGSKDGAVLVWLLTDL  155 (476)
T ss_pred             ccceeeeecCCCceEEEeecccCcEEEEEeccccHHH---HHHhhccceeEEEEeCCCc--EEEecCCCccEEEEEEEee
Confidence            4589999999999999999999999999999999887   6789999999999999999  89999999999999874  


Q ss_pred             -------CCceeEEeecCCcCeEEEeeeecCCceEEEEecCCCcEEEEecCCCCceeeecCCCCceEEEEEccCCCeeee
Q 001415          498 -------NGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQ  570 (1082)
Q Consensus       498 -------~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~  570 (1082)
                             +-++++.+..|.-+|+++...+.+...++++++.|.++++||+..+.....+..                   
T Consensus       156 v~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~f-------------------  216 (476)
T KOG0646|consen  156 VSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITF-------------------  216 (476)
T ss_pred             cccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEec-------------------
Confidence                   346788999999999999988776667999999999999999987654443322                   


Q ss_pred             cccccceeEEEecCCCCEEEEEeCCCeEEEEECCC----------------cceEEEEecCCCCCCcCeEEEcCCCCEEE
Q 001415          571 GFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDS----------------VQLLTSIDADGGLPASPRIRFNKDGCLLA  634 (1082)
Q Consensus       571 ~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~----------------~~~~~~~~~~~~~~~i~~~~~s~dg~~l~  634 (1082)
                         ...+.+++++|-+..+++|+++|.|.+.++..                +..+..+.+|.+...|+|++++-||.+|+
T Consensus       217 ---p~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLl  293 (476)
T KOG0646|consen  217 ---PSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLL  293 (476)
T ss_pred             ---CCcceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEE
Confidence               22455666666666888888888888877643                22344555666556899999999999999


Q ss_pred             EEECCCcEEEEEecCCccceeecccccc
Q 001415          635 VSTNDNGIKILATSDGIRLLRTFENLAY  662 (1082)
Q Consensus       635 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~  662 (1082)
                      +|+.||.+.|||+.+. ++++++.....
T Consensus       294 SGd~dg~VcvWdi~S~-Q~iRtl~~~kg  320 (476)
T KOG0646|consen  294 SGDEDGKVCVWDIYSK-QCIRTLQTSKG  320 (476)
T ss_pred             eeCCCCCEEEEecchH-HHHHHHhhhcc
Confidence            9999999999999877 66666654333

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.90  E-value=9.4e-22  Score=216.39  Aligned_cols=250  Identities=16%  Similarity=0.195  Sum_probs=201.1

Q ss_pred             cccceeEEEEccCCceeeecccCCeEEEeeccccccCCCCCcccccCccccCCCCcceeecccCCCCCCCCccEEEeecC
Q 001415          718 RATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKN  797 (1082)
Q Consensus       718 ~~~~i~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~d  797 (1082)
                      |....+.++|.|+|..|++++.||.|++|+.......|+.-          +              .+...|.+++.  +
T Consensus        12 ht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti----------~--------------~~g~~v~~ia~--~   65 (933)
T KOG1274|consen   12 HTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETI----------D--------------ISGELVSSIAC--Y   65 (933)
T ss_pred             ccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchh----------h--------------ccCceeEEEee--c
Confidence            77788999999999999999999999999765432111100          0              03445555554  4


Q ss_pred             CCeEEEee-CCeEEEEecCCCeeEEEECCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEecccceeeeeecccccCEEEE
Q 001415          798 DSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGL  876 (1082)
Q Consensus       798 g~~l~~~s-dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l  876 (1082)
                      +.++++++ +++|.+|.+.++..-..+....-++++++|+- +|.++|.|++|-.|++-++.+......+++|.++|.+|
T Consensus        66 s~~f~~~s~~~tv~~y~fps~~~~~iL~Rftlp~r~~~v~g-~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l  144 (933)
T KOG1274|consen   66 SNHFLTGSEQNTVLRYKFPSGEEDTILARFTLPIRDLAVSG-SGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQL  144 (933)
T ss_pred             ccceEEeeccceEEEeeCCCCCccceeeeeeccceEEEEec-CCcEEEeecCceeEEEEeccccchheeecccCCceeee
Confidence            45777777 69999999998876655555667899999999 99999999999999999999999999999999999999


Q ss_pred             EEeCCCCEEEEEeCCCcEEEEEcCCcccccceeeeccCCCCCCCCCCcEEEEcCCCcEE-EEEecCeEEEEEccCcceee
Q 001415          877 AFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHF-LVVHETQLAIFETTKLECVK  955 (1082)
Q Consensus       877 ~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l-~~~~d~~i~iwd~~~~~~~~  955 (1082)
                      .|+|.+.+||+.+.||.|++|++.++......-.............+..++|+|+|..+ +.+.|+.|++|+...+....
T Consensus       145 ~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f  224 (933)
T KOG1274|consen  145 SYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQF  224 (933)
T ss_pred             eEcCCCCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceehe
Confidence            99999999999999999999999987653321111111111112456789999995555 45899999999999999998


Q ss_pred             eeccCCCCcceeEEEEcCCCceEEEeecCCcEEEEecCC
Q 001415          956 QWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAAN  994 (1082)
Q Consensus       956 ~~~~~~h~~~i~~l~~s~dg~~l~t~s~dg~v~vwd~~~  994 (1082)
                      .+....|...+..++|||+|+|||+++-||.|.|||.++
T Consensus       225 ~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t  263 (933)
T KOG1274|consen  225 KLRDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDT  263 (933)
T ss_pred             eecccccccceEEEEEcCCCcEEeeeccCCcEEEEeccc
Confidence            888877777799999999999999999999999999997

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.90  E-value=1.2e-22  Score=207.18  Aligned_cols=274  Identities=15%  Similarity=0.205  Sum_probs=220.6

Q ss_pred             cCCCCceeeeccCCceeEEEecccCCCCccccccccCcccccceeEEEEccCCceeeecccCCeEEEeeccccccCCCCC
Q 001415          679 LADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGK  758 (1082)
Q Consensus       679 s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~  758 (1082)
                      +...+.+.+|+. |.|++||+...........+....  ..+.|+++...|||+.|++++.-.++.|||+........  
T Consensus       428 S~~trhVyTgGk-gcVKVWdis~pg~k~PvsqLdcl~--rdnyiRSckL~pdgrtLivGGeastlsiWDLAapTprik--  502 (705)
T KOG0639|consen  428 SNPTRHVYTGGK-GCVKVWDISQPGNKSPVSQLDCLN--RDNYIRSCKLLPDGRTLIVGGEASTLSIWDLAAPTPRIK--  502 (705)
T ss_pred             cCCcceeEecCC-CeEEEeeccCCCCCCccccccccC--cccceeeeEecCCCceEEeccccceeeeeeccCCCcchh--
Confidence            556666777766 899999998764444443333322  678899999999999999999999999999874322110  


Q ss_pred             cccccCccccCCCCcceeecccCCCCCCCCccEEEeecCCCeEEEe-eCCeEEEEecCCCeeEEEECCCCCCeeEEEEec
Q 001415          759 ATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSA-SGGKISLFNMMTFKTMATFMPPPPAATFLAFHP  837 (1082)
Q Consensus       759 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~l~~~-sdg~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp  837 (1082)
                                         ..+..  ..-...+++.+||.++.+++ +||.|.|||+.+...++.|++|...+.|+.+++
T Consensus       503 -------------------aelts--sapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~  561 (705)
T KOG0639|consen  503 -------------------AELTS--SAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISK  561 (705)
T ss_pred             -------------------hhcCC--cchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEecC
Confidence                               01111  23446678999999987776 489999999999999999999999999999999


Q ss_pred             CCCcEEEEEeCCCcEEEEecccceeeeeecccccCEEEEEEeCCCCEEEEEeCCCcEEEEEcCCcccccceeeeccCCCC
Q 001415          838 QDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRT  917 (1082)
Q Consensus       838 ~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~  917 (1082)
                       ||..|-+|+-|.+||-||+++++.+.... ..+.|.++..+|.+.+|+.|-.++.+.|-.....++..   +..   |.
T Consensus       562 -dGtklWTGGlDntvRcWDlregrqlqqhd-F~SQIfSLg~cP~~dWlavGMens~vevlh~skp~kyq---lhl---he  633 (705)
T KOG0639|consen  562 -DGTKLWTGGLDNTVRCWDLREGRQLQQHD-FSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPEKYQ---LHL---HE  633 (705)
T ss_pred             -CCceeecCCCccceeehhhhhhhhhhhhh-hhhhheecccCCCccceeeecccCcEEEEecCCcccee---ecc---cc
Confidence             99999999999999999999987665543 45779999999999999999999988888777644321   111   12


Q ss_pred             CCCCCCcEEEEcCCCcEEEE-EecCeEEEEEccCcceeeeeccCCCCcceeEEEEcCCCceEEEeecCCcEEEEec
Q 001415          918 PTAQSDTRVQFHQDQIHFLV-VHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSA  992 (1082)
Q Consensus       918 ~~~~~v~~~~fspdg~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~dg~~l~t~s~dg~v~vwd~  992 (1082)
                         ..|.++.|++-|+++++ +.|+-+..|...-|..+....   ..+.|.+..+|.|.+|++||+.|....||.+
T Consensus       634 ---ScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqsk---E~SsVlsCDIS~ddkyIVTGSGdkkATVYeV  703 (705)
T KOG0639|consen  634 ---SCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSK---ESSSVLSCDISFDDKYIVTGSGDKKATVYEV  703 (705)
T ss_pred             ---cEEEEEEecccCceeeecCchhhhhhccCccccceeecc---ccCcceeeeeccCceEEEecCCCcceEEEEE
Confidence               56899999999999999 799999999998888876655   2789999999999999999999999888875

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.90  E-value=2.2e-22  Score=204.89  Aligned_cols=234  Identities=20%  Similarity=0.328  Sum_probs=183.1

Q ss_pred             cceeeecCCCCCceEEEEecCCCeEEEEEcCCCcEEEEEccccceeeeeceeeeccCCCCcccccccccCCCCceeEEEE
Q 001415          349 KTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIW  428 (1082)
Q Consensus       349 ~~~~~~~~h~~~v~~~~~spdg~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~  428 (1082)
                      +.-.++.+|+++-+.++|++...-.|++|+.|++|++||+.......            .......++.+|+..|..++|
T Consensus       168 ~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~------------~~~~p~~~~~~h~~~VeDV~~  235 (422)
T KOG0264|consen  168 RPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHTICLWDINAESKED------------KVVDPKTIFSGHEDVVEDVAW  235 (422)
T ss_pred             CCceEEEeecccccccccccccceeEeeccCCCcEEEEeccccccCC------------ccccceEEeecCCcceehhhc
Confidence            33458889999999999999988789999999999999997654421            111223358999999999999


Q ss_pred             ec-CCCeEEEEeCCCeEEEEEccCCceeeEEEEeeccccCeeEEEecCCCCceEEEEEeCCCcEEEEEccC-CceeEEee
Q 001415          429 SP-DGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATN-GAKQYIFE  506 (1082)
Q Consensus       429 sp-dg~~las~~~d~~v~iwd~~~~~~~~~~~~~~~h~~~V~~l~fs~dg~~~~l~s~s~d~~i~vwd~~~-~~~~~~~~  506 (1082)
                      +| +...+++++.|+.+.|||+.++ ..+......+|.+.|.|++|+|-+.. +|||||.|++|++||+++ .++++++.
T Consensus       236 h~~h~~lF~sv~dd~~L~iwD~R~~-~~~~~~~~~ah~~~vn~~~fnp~~~~-ilAT~S~D~tV~LwDlRnL~~~lh~~e  313 (422)
T KOG0264|consen  236 HPLHEDLFGSVGDDGKLMIWDTRSN-TSKPSHSVKAHSAEVNCVAFNPFNEF-ILATGSADKTVALWDLRNLNKPLHTFE  313 (422)
T ss_pred             cccchhhheeecCCCeEEEEEcCCC-CCCCcccccccCCceeEEEeCCCCCc-eEEeccCCCcEEEeechhcccCceecc
Confidence            99 7778999999999999999964 33334467899999999999998887 899999999999999987 45789999


Q ss_pred             cCCcCeEEEeeeecCCceEEEEecCCCcEEEEecCCCCceeeecCCCCceEEEEEccCCCeeeecccccceeEEEecCCC
Q 001415          507 GHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTK  586 (1082)
Q Consensus       507 ~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~i~~~~~~~~~  586 (1082)
                      +|...|..+.|+|..+ ..|++++.|+.+.+||+..-...............+       ....|.+...+..+.|+|..
T Consensus       314 ~H~dev~~V~WSPh~e-tvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEl-------lF~HgGH~~kV~DfsWnp~e  385 (422)
T KOG0264|consen  314 GHEDEVFQVEWSPHNE-TVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPEL-------LFIHGGHTAKVSDFSWNPNE  385 (422)
T ss_pred             CCCcceEEEEeCCCCC-ceeEecccCCcEEEEeccccccccChhhhccCCcce-------eEEecCcccccccccCCCCC
Confidence            9999999999999776 699999999999999998644433211111111111       22233334467778888887


Q ss_pred             CEE-EEEeCCCeEEEEECC
Q 001415          587 NRF-LAAGDDFSIKFWDMD  604 (1082)
Q Consensus       587 ~~l-~~~~~dg~i~iwd~~  604 (1082)
                      .++ +++++|+.+.||.+.
T Consensus       386 PW~I~SvaeDN~LqIW~~s  404 (422)
T KOG0264|consen  386 PWTIASVAEDNILQIWQMA  404 (422)
T ss_pred             CeEEEEecCCceEEEeecc
Confidence            755 567899999999875

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.90  E-value=2.3e-20  Score=204.23  Aligned_cols=279  Identities=16%  Similarity=0.226  Sum_probs=200.5

Q ss_pred             CEEEEEeCCCeEEEEECCCcceEEEEecCCCCCCcCeEEEcCCCCEE-EEEECCCcEEEEEecCCccceeeccccccccc
Q 001415          587 NRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLL-AVSTNDNGIKILATSDGIRLLRTFENLAYDAS  665 (1082)
Q Consensus       587 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~  665 (1082)
                      ..+++++.|+.|++||+.+++.+..+..+..   +.+++|+|+++.+ ++++.++.|++||..++. ....+.       
T Consensus         2 ~~~~s~~~d~~v~~~d~~t~~~~~~~~~~~~---~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~-~~~~~~-------   70 (300)
T TIGR03866         2 KAYVSNEKDNTISVIDTATLEVTRTFPVGQR---PRGITLSKDGKLLYVCASDSDTIQVIDLATGE-VIGTLP-------   70 (300)
T ss_pred             cEEEEecCCCEEEEEECCCCceEEEEECCCC---CCceEECCCCCEEEEEECCCCeEEEEECCCCc-EEEecc-------
Confidence            3578889999999999999998888875433   6789999999877 456678889999876541 100000       


Q ss_pred             ccccccCCCCccccCCCCceeeeccCCceeEEEecccCCCCccccccccCcccccceeEEEEccCCceeeecccCCeEEE
Q 001415          666 RTSENSKNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLL  745 (1082)
Q Consensus       666 ~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~i  745 (1082)
                                                                                                      
T Consensus        71 --------------------------------------------------------------------------------   70 (300)
T TIGR03866        71 --------------------------------------------------------------------------------   70 (300)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             eeccccccCCCCCcccccCccccCCCCcceeecccCCCCCCCCccEEEeecCCCeEEEe-e-CCeEEEEecCCCeeEEEE
Q 001415          746 WKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSA-S-GGKISLFNMMTFKTMATF  823 (1082)
Q Consensus       746 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~l~~~-s-dg~i~iwd~~~~~~~~~~  823 (1082)
                                                             ....+..++++|+++.++++ . ++.+++||+.+.+.+..+
T Consensus        71 ---------------------------------------~~~~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~  111 (300)
T TIGR03866        71 ---------------------------------------SGPDPELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEI  111 (300)
T ss_pred             ---------------------------------------CCCCccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEe
Confidence                                                   00112345677777766544 3 578999999887777766


Q ss_pred             CCCCCCeeEEEEecCCCcEEEEEeCCC-cEEEEecccceeeeeecccccCEEEEEEeCCCCEEEEE-eCCCcEEEEEcCC
Q 001415          824 MPPPPAATFLAFHPQDNNIIAIGMDDS-SIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSS-GADSQLCVWSSDG  901 (1082)
Q Consensus       824 ~~~~~~v~~l~~sp~~~~~lasg~~dg-~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~-s~Dg~i~vwd~~~  901 (1082)
                      .. ...+.+++|+| ++.+++++..++ .+.+||..+++....+.. ...+.+++|+|++++|+.+ ..++.|.+||+.+
T Consensus       112 ~~-~~~~~~~~~~~-dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~  188 (300)
T TIGR03866       112 PV-GVEPEGMAVSP-DGKIVVNTSETTNMAHFIDTKTYEIVDNVLV-DQRPRFAEFTADGKELWVSSEIGGTVSVIDVAT  188 (300)
T ss_pred             eC-CCCcceEEECC-CCCEEEEEecCCCeEEEEeCCCCeEEEEEEc-CCCccEEEECCCCCEEEEEcCCCCEEEEEEcCc
Confidence            53 33468899999 888888888765 567789988877655432 2345789999999988554 4689999999998


Q ss_pred             cccccceeeeccCCCCCCCCCCcEEEEcCCCcEEEE--EecCeEEEEEccCcceeeeeccCCCCcceeEEEEcCCCceEE
Q 001415          902 WEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV--VHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVY  979 (1082)
Q Consensus       902 ~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~--~~d~~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~dg~~l~  979 (1082)
                      ++............+. .......++|+|+++++++  +.++.+.+||..+++.+..+.   +...+.+++|+|+|++|+
T Consensus       189 ~~~~~~~~~~~~~~~~-~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~---~~~~~~~~~~~~~g~~l~  264 (300)
T TIGR03866       189 RKVIKKITFEIPGVHP-EAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDYLL---VGQRVWQLAFTPDEKYLL  264 (300)
T ss_pred             ceeeeeeeeccccccc-ccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEE---eCCCcceEEECCCCCEEE
Confidence            6543221111111110 0122357899999998655  356789999999888776553   234789999999999998


Q ss_pred             Eee-cCCcEEEEecCCceeeeeeC
Q 001415          980 ACF-LDATVCVFSAANLKLRCRIN 1002 (1082)
Q Consensus       980 t~s-~dg~v~vwd~~~~~~~~~~~ 1002 (1082)
                      +++ .+|.|++||+.+++.+.++.
T Consensus       265 ~~~~~~~~i~v~d~~~~~~~~~~~  288 (300)
T TIGR03866       265 TTNGVSNDVSVIDVAALKVIKSIK  288 (300)
T ss_pred             EEcCCCCeEEEEECCCCcEEEEEE
Confidence            864 68999999999999998876

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.89  E-value=2.8e-20  Score=203.54  Aligned_cols=294  Identities=13%  Similarity=0.145  Sum_probs=203.6

Q ss_pred             CCeEEEEeCCCeEEEEEccCCceeeEEEEeeccccCeeEEEecCCCCceEEEEEeCCCcEEEEEccCCceeEEeecCCcC
Q 001415          432 GSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAP  511 (1082)
Q Consensus       432 g~~las~~~d~~v~iwd~~~~~~~~~~~~~~~h~~~V~~l~fs~dg~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~  511 (1082)
                      ++.+++++.|+.|++||+.+++.+.   .+..|. .+.+++|+|+|+. ++++++.++.|++||..+++.+..+..+.. 
T Consensus         1 ~~~~~s~~~d~~v~~~d~~t~~~~~---~~~~~~-~~~~l~~~~dg~~-l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~-   74 (300)
T TIGR03866         1 EKAYVSNEKDNTISVIDTATLEVTR---TFPVGQ-RPRGITLSKDGKL-LYVCASDSDTIQVIDLATGEVIGTLPSGPD-   74 (300)
T ss_pred             CcEEEEecCCCEEEEEECCCCceEE---EEECCC-CCCceEECCCCCE-EEEEECCCCeEEEEECCCCcEEEeccCCCC-
Confidence            3578899999999999999888665   455554 4678999999984 346778899999999999988887765544 


Q ss_pred             eEEEeeeecCCceEE-EEecCCCcEEEEecCCCCceeeecCCCCceEEEEEccCCCeeeecccccceeEEEecCCCCEEE
Q 001415          512 VYSVCPHHKENIQFI-FSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFL  590 (1082)
Q Consensus       512 v~~~~~~~~~~~~~l-~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~i~~~~~~~~~~~l~  590 (1082)
                      +..++|+++.  +.+ ++++.++.+++||+.+......+.. ...+.                     .++++|++..++
T Consensus        75 ~~~~~~~~~g--~~l~~~~~~~~~l~~~d~~~~~~~~~~~~-~~~~~---------------------~~~~~~dg~~l~  130 (300)
T TIGR03866        75 PELFALHPNG--KILYIANEDDNLVTVIDIETRKVLAEIPV-GVEPE---------------------GMAVSPDGKIVV  130 (300)
T ss_pred             ccEEEECCCC--CEEEEEcCCCCeEEEEECCCCeEEeEeeC-CCCcc---------------------eEEECCCCCEEE
Confidence            4566776543  555 4556689999999987544333321 11223                     355555566787


Q ss_pred             EEeCCC-eEEEEECCCcceEEEEecCCCCCCcCeEEEcCCCCEEEEEE-CCCcEEEEEecCCccceeecccccccccccc
Q 001415          591 AAGDDF-SIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVST-NDNGIKILATSDGIRLLRTFENLAYDASRTS  668 (1082)
Q Consensus       591 ~~~~dg-~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~  668 (1082)
                      ++..++ .+.+||..+++.........   ....++|+|+|++|++++ .++.|++||+.++. ....+.          
T Consensus       131 ~~~~~~~~~~~~d~~~~~~~~~~~~~~---~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~-~~~~~~----------  196 (300)
T TIGR03866       131 NTSETTNMAHFIDTKTYEIVDNVLVDQ---RPRFAEFTADGKELWVSSEIGGTVSVIDVATRK-VIKKIT----------  196 (300)
T ss_pred             EEecCCCeEEEEeCCCCeEEEEEEcCC---CccEEEECCCCCEEEEEcCCCCEEEEEEcCcce-eeeeee----------
Confidence            777654 57788998887766554322   357799999999886554 58899999987652 111110          


Q ss_pred             cccCCCCccccCCCCceeeeccCCceeEEEecccCCCCccccccccCcccccceeEEEEccCCceeeecccCCeEEEeec
Q 001415          669 ENSKNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKW  748 (1082)
Q Consensus       669 ~~~~~~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iw~~  748 (1082)
                                                                                +...+.      ..        
T Consensus       197 ----------------------------------------------------------~~~~~~------~~--------  204 (300)
T TIGR03866       197 ----------------------------------------------------------FEIPGV------HP--------  204 (300)
T ss_pred             ----------------------------------------------------------eccccc------cc--------
Confidence                                                                      000000      00        


Q ss_pred             cccccCCCCCcccccCccccCCCCcceeecccCCCCCCCCccEEEeecCCCeEEEe--eCCeEEEEecCCCeeEEEECCC
Q 001415          749 QRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSA--SGGKISLFNMMTFKTMATFMPP  826 (1082)
Q Consensus       749 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~l~~~--sdg~i~iwd~~~~~~~~~~~~~  826 (1082)
                                                          .......++|+|++++++++  .++.+.+||..+++....+. +
T Consensus       205 ------------------------------------~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~  247 (300)
T TIGR03866       205 ------------------------------------EAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDYLL-V  247 (300)
T ss_pred             ------------------------------------ccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEE-e
Confidence                                                01112356788888875443  35779999999888776553 3


Q ss_pred             CCCeeEEEEecCCCcEEEEE-eCCCcEEEEecccceeeeeecccccCEEEEEEeC
Q 001415          827 PPAATFLAFHPQDNNIIAIG-MDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSH  880 (1082)
Q Consensus       827 ~~~v~~l~~sp~~~~~lasg-~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~  880 (1082)
                      ...+.+++|+| ++++|+++ ..+|.|.+||+.+++++..++.. ...+.++|+|
T Consensus       248 ~~~~~~~~~~~-~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~~~-~~~~~~~~~~  300 (300)
T TIGR03866       248 GQRVWQLAFTP-DEKYLLTTNGVSNDVSVIDVAALKVIKSIKVG-RLPWGVVVRP  300 (300)
T ss_pred             CCCcceEEECC-CCCEEEEEcCCCCeEEEEECCCCcEEEEEEcc-cccceeEeCC
Confidence            45789999999 78888776 56899999999999999998865 5558888875

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.89  E-value=2.5e-21  Score=187.12  Aligned_cols=283  Identities=17%  Similarity=0.157  Sum_probs=209.6

Q ss_pred             cCCCCceeEEEEecCCCeEEEEeCCCeEEEEEccCCceeeEEEEeeccccCeeEEEecCCCCceEEEEEeCCCcEEEEEc
Q 001415          417 KDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDA  496 (1082)
Q Consensus       417 ~~h~~~V~~l~~spdg~~las~~~d~~v~iwd~~~~~~~~~~~~~~~h~~~V~~l~fs~dg~~~~l~s~s~d~~i~vwd~  496 (1082)
                      ....+.|+.+.|+|.+..|++++-||++++|++.......    .-.|..++.+++|.++..   +++|+.||.|+.+|+
T Consensus        10 npP~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~----~~~~~~plL~c~F~d~~~---~~~G~~dg~vr~~Dl   82 (323)
T KOG1036|consen   10 NPPEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKL----KFKHGAPLLDCAFADEST---IVTGGLDGQVRRYDL   82 (323)
T ss_pred             CCChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhh----heecCCceeeeeccCCce---EEEeccCceEEEEEe
Confidence            3457799999999999999999999999999999875333    335899999999998665   899999999999999


Q ss_pred             cCCceeEEeecCCcCeEEEeeeecCCceEEEEecCCCcEEEEecCCCCceeeecCCCCceEEEEEccCCCeeeecccccc
Q 001415          497 TNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRS  576 (1082)
Q Consensus       497 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~  576 (1082)
                      .++..... ..|..+|.++...+..  ..+++|+.|++|++||.+.......+.... .|.++                 
T Consensus        83 n~~~~~~i-gth~~~i~ci~~~~~~--~~vIsgsWD~~ik~wD~R~~~~~~~~d~~k-kVy~~-----------------  141 (323)
T KOG1036|consen   83 NTGNEDQI-GTHDEGIRCIEYSYEV--GCVISGSWDKTIKFWDPRNKVVVGTFDQGK-KVYCM-----------------  141 (323)
T ss_pred             cCCcceee-ccCCCceEEEEeeccC--CeEEEcccCccEEEEeccccccccccccCc-eEEEE-----------------
Confidence            98876554 4599999999987554  479999999999999998633333222221 33333                 


Q ss_pred             eeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEecCCc---cc
Q 001415          577 LGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGI---RL  653 (1082)
Q Consensus       577 i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~iwd~~~~~---~~  653 (1082)
                            +-.++.|++|+.+..+.+||+++...........-...++++++-|++.-.++++-||.|.+=.+....   ..
T Consensus       142 ------~v~g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~sk  215 (323)
T KOG1036|consen  142 ------DVSGNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSK  215 (323)
T ss_pred             ------eccCCEEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhh
Confidence                  333457999999999999999986654433322223357899999988889999999999876655441   12


Q ss_pred             eeecccccccccccccccCCCCccccCCCCceeeeccCCceeEEEecccCCCCccccccccCcccccceeEEEEccCCce
Q 001415          654 LRTFENLAYDASRTSENSKNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNA  733 (1082)
Q Consensus       654 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~  733 (1082)
                      .-.++.|........+.++-..+.++|--..+++|+.||.|.+||+...+...++..       ....|..++|+.+|..
T Consensus       216 kyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~-------~~~SI~slsfs~dG~~  288 (323)
T KOG1036|consen  216 KYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQLAK-------YETSISSLSFSMDGSL  288 (323)
T ss_pred             ceeEEeeecccCCceEEEEeceeEeccccceEEecCCCceEEEccCcchhhhhhccC-------CCCceEEEEeccCCCe
Confidence            223444433322223334445555589999999999999999999986544433332       3567999999999999


Q ss_pred             eeecccC
Q 001415          734 ILALASN  740 (1082)
Q Consensus       734 l~~~~~d  740 (1082)
                      |+.++.-
T Consensus       289 LAia~sy  295 (323)
T KOG1036|consen  289 LAIASSY  295 (323)
T ss_pred             EEEEech
Confidence            9887764

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.89  E-value=5.9e-21  Score=182.29  Aligned_cols=308  Identities=14%  Similarity=0.204  Sum_probs=227.0

Q ss_pred             ccCCCCceeEEEEec-CCCeEEEEeCCCeEEEEEccCCceee------------EEEEeeccccCeeEEEecCCCCceEE
Q 001415          416 VKDPGVSVNRVIWSP-DGSLFGVAYSRHIVQIYSYHGGDEVR------------QHLEIDAHVGGVNDIAFSHPNKQLCV  482 (1082)
Q Consensus       416 ~~~h~~~V~~l~~sp-dg~~las~~~d~~v~iwd~~~~~~~~------------~~~~~~~h~~~V~~l~fs~dg~~~~l  482 (1082)
                      ...|.+.|+++.+.+ .|+|+++|+.||.|.+||+++.....            ...--.+|.-.|.++.|-|-+.. ++
T Consensus        39 ~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtG-mF  117 (397)
T KOG4283|consen   39 VRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTG-MF  117 (397)
T ss_pred             eccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCc-ee
Confidence            567999999999999 89999999999999999998654110            01112468889999999997666 79


Q ss_pred             EEEeCCCcEEEEEccCCceeEEeecCCcCeEEEeeeecCCc-eEEEEecCCCcEEEEecCCCCceeeecCCCCceEEEEE
Q 001415          483 ITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENI-QFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAY  561 (1082)
Q Consensus       483 ~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~  561 (1082)
                      .+++.|.+++|||..+-+....|+ ..+.|.+-+++|-... -++++|..|-.|++.|+.++.....+.+|.+.|.++.|
T Consensus       118 tssSFDhtlKVWDtnTlQ~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~W  196 (397)
T KOG4283|consen  118 TSSSFDHTLKVWDTNTLQEAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEW  196 (397)
T ss_pred             ecccccceEEEeecccceeeEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEEe
Confidence            999999999999999998888887 6678888888776543 36677777889999999999999999999999999999


Q ss_pred             ccCCCeeeecccccceeEEEecCCCCEEEEEeCCCeEEEEECCCc-ceEEEEecCCCCCCcCeEEEcCCCCEEEEEECCC
Q 001415          562 SADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSV-QLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDN  640 (1082)
Q Consensus       562 s~d~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg  640 (1082)
                      +|....                    .|++|+.||.|++||++.. .+.                               
T Consensus       197 sp~~e~--------------------vLatgsaDg~irlWDiRrasgcf-------------------------------  225 (397)
T KOG4283|consen  197 SPSSEW--------------------VLATGSADGAIRLWDIRRASGCF-------------------------------  225 (397)
T ss_pred             ccCcee--------------------EEEecCCCceEEEEEeeccccee-------------------------------
Confidence            988763                    4778999999999998642 222                               


Q ss_pred             cEEEEEecCCccceeecccccccccccccccCCCCccccCCCCceeeeccCCceeEEEecccCCCCccccccccCccccc
Q 001415          641 GIKILATSDGIRLLRTFENLAYDASRTSENSKNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRAT  720 (1082)
Q Consensus       641 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~  720 (1082)
                        ++.|..+++.+. .++                                                       ....|.+
T Consensus       226 --~~lD~hn~k~~p-~~~-------------------------------------------------------~n~ah~g  247 (397)
T KOG4283|consen  226 --RVLDQHNTKRPP-ILK-------------------------------------------------------TNTAHYG  247 (397)
T ss_pred             --EEeecccCccCc-ccc-------------------------------------------------------ccccccc
Confidence              222222221000 000                                                       0012788


Q ss_pred             ceeEEEEccCCceeeecccCCeEEEeeccccccCC--CCCcccccCccccCCCCcceeecccCCCCCCCCccEEEeecCC
Q 001415          721 KISRLIFTNSGNAILALASNAIHLLWKWQRTERNS--SGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKND  798 (1082)
Q Consensus       721 ~i~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg  798 (1082)
                      .+..++|+.++.++++++.|..+++|+...+....  .+....       +..++             -.+. +. +-+.
T Consensus       248 kvngla~tSd~~~l~~~gtd~r~r~wn~~~G~ntl~~~g~~~~-------n~~~~-------------~~~~-~~-~~~s  305 (397)
T KOG4283|consen  248 KVNGLAWTSDARYLASCGTDDRIRVWNMESGRNTLREFGPIIH-------NQTTS-------------FAVH-IQ-SMDS  305 (397)
T ss_pred             eeeeeeecccchhhhhccCccceEEeecccCcccccccccccc-------ccccc-------------ceEE-Ee-eccc
Confidence            89999999999999999999999999876543211  111110       00000             0000 11 2222


Q ss_pred             C-eEEEeeCCeEEEEecCCCeeEEEECCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEec
Q 001415          799 S-YVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNV  857 (1082)
Q Consensus       799 ~-~l~~~sdg~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~  857 (1082)
                      . ++..-.++.+.++++-++..++.+..|...+.|.++-| +-+...+|..|+.|..|-.
T Consensus       306 ~vfv~~p~~~~lall~~~sgs~ir~l~~h~k~i~c~~~~~-~fq~~~tg~~d~ni~~w~p  364 (397)
T KOG4283|consen  306 DVFVLFPNDGSLALLNLLEGSFVRRLSTHLKRINCAAYRP-DFEQCFTGDMNGNIYMWSP  364 (397)
T ss_pred             ceEEEEecCCeEEEEEccCceEEEeeecccceeeEEeecC-chhhhhccccCCccccccc
Confidence            2 22222468899999999999999999988899999999 7888899999999999976

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.89  E-value=2.3e-21  Score=186.93  Aligned_cols=299  Identities=12%  Similarity=0.176  Sum_probs=207.8

Q ss_pred             CCCcceeeecCCCCCceEEEEecCCCeEEEEEcCCCcEEEEEccccceeeeeceeeeccCCCCcccccccccCCCCceeE
Q 001415          346 DLPKTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNR  425 (1082)
Q Consensus       346 ~~~~~~~~~~~h~~~v~~~~~spdg~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~  425 (1082)
                      +.|..+..++.|.. -.|+.||+.|. +||+|..||.|.|||+.|...-+                   ++.+|..+|++
T Consensus        12 ~~PEel~~tld~~~-a~~~~Fs~~G~-~lAvGc~nG~vvI~D~~T~~iar-------------------~lsaH~~pi~s   70 (405)
T KOG1273|consen   12 EYPEELTHTLDNPL-AECCQFSRWGD-YLAVGCANGRVVIYDFDTFRIAR-------------------MLSAHVRPITS   70 (405)
T ss_pred             cChHhhceeccCCc-cceEEeccCcc-eeeeeccCCcEEEEEccccchhh-------------------hhhccccceeE
Confidence            34667778888877 89999999999 59999999999999998865332                   58999999999


Q ss_pred             EEEecCCCeEEEEeCCCeEEEEEccCCceeeEEEEeeccccCeeEEEecCCCCceEEEEEeCCCcEEEEEccCCceeEEe
Q 001415          426 VIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIF  505 (1082)
Q Consensus       426 l~~spdg~~las~~~d~~v~iwd~~~~~~~~~~~~~~~h~~~V~~l~fs~dg~~~~l~s~s~d~~i~vwd~~~~~~~~~~  505 (1082)
                      ++||+||+.|++++.|..|.+||+..|.++++.    ....+|+.+.|.|-..+..+| .-.+..-.+-++..++...--
T Consensus        71 l~WS~dgr~LltsS~D~si~lwDl~~gs~l~ri----rf~spv~~~q~hp~k~n~~va-~~~~~sp~vi~~s~~~h~~Lp  145 (405)
T KOG1273|consen   71 LCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRI----RFDSPVWGAQWHPRKRNKCVA-TIMEESPVVIDFSDPKHSVLP  145 (405)
T ss_pred             EEecCCCCEeeeecCCceeEEEeccCCCceeEE----EccCccceeeeccccCCeEEE-EEecCCcEEEEecCCceeecc
Confidence            999999999999999999999999999977632    246799999999987763444 334444555555543221111


Q ss_pred             ecCCcC--eEEEeeeecCCceEEEEecCCCcEEEEecCCCCceeeecCCC-CceEEEEEccCCCeeeecccccceeEEEe
Q 001415          506 EGHEAP--VYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPG-RWCTTMAYSADGTRTYQGFRKRSLGVVQF  582 (1082)
Q Consensus       506 ~~h~~~--v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~~v~~~~~s~d~~~~~~~~~~~~i~~~~~  582 (1082)
                      ....+.  +.+-+-.++..|+++++|...|.+.++|..+.+....+.... ..|..+.++.                   
T Consensus       146 ~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~-------------------  206 (405)
T KOG1273|consen  146 KDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSR-------------------  206 (405)
T ss_pred             CCCccccccccccccccCCCCEEEEecCcceEEEEecchheeeeeeeechheeeeEEEEec-------------------
Confidence            111111  111111245667899999999999999999877666555443 4444444444                   


Q ss_pred             cCCCCEEEEEeCCCeEEEEECCCc-------ce--EEEEecCCCCCCcCeEEEcCCCCEEEEEEC-CCcEEEEEecCCcc
Q 001415          583 DTTKNRFLAAGDDFSIKFWDMDSV-------QL--LTSIDADGGLPASPRIRFNKDGCLLAVSTN-DNGIKILATSDGIR  652 (1082)
Q Consensus       583 ~~~~~~l~~~~~dg~i~iwd~~~~-------~~--~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~-dg~i~iwd~~~~~~  652 (1082)
                        .|..|+.-+.|..||.|++..-       +.  .+.++---+...-.+++|+.+|.|++.++. ...++||....| .
T Consensus       207 --~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~G-s  283 (405)
T KOG1273|consen  207 --KGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIG-S  283 (405)
T ss_pred             --cCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecCCccEEEeccccceeEEEEecCCc-c
Confidence              4458999999999999997621       11  111110001112467899999999988764 467999999888 7


Q ss_pred             ceeecccccccccccccccCCCCccccCCCCceeeeccCCceeEEEecc
Q 001415          653 LLRTFENLAYDASRTSENSKNGDVRSLADVKPRITEESNDKSKVWKLTE  701 (1082)
Q Consensus       653 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~iw~~~~  701 (1082)
                      +++.+.+....... .+.+       .|-...+++- ..|.+++|....
T Consensus       284 LVKILhG~kgE~l~-DV~w-------hp~rp~i~si-~sg~v~iw~~~~  323 (405)
T KOG1273|consen  284 LVKILHGTKGEELL-DVNW-------HPVRPIIASI-ASGVVYIWAVVQ  323 (405)
T ss_pred             eeeeecCCchhhee-eccc-------ccceeeeeec-cCCceEEEEeec
Confidence            88888876643321 2233       3333334444 678999998754

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.89  E-value=1.5e-21  Score=198.89  Aligned_cols=297  Identities=17%  Similarity=0.266  Sum_probs=216.2

Q ss_pred             EEeCC-CcEEEEEccCCceeEEeecC-CcCeEEEeeeecCCceEEEEecC-CCcEEEEecCCCCceeeecCCCCceEEEE
Q 001415          484 TCGDD-KTIKVWDATNGAKQYIFEGH-EAPVYSVCPHHKENIQFIFSTAL-DGKIKAWLYDNLGSRVDYEAPGRWCTTMA  560 (1082)
Q Consensus       484 s~s~d-~~i~vwd~~~~~~~~~~~~h-~~~v~~~~~~~~~~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~~~v~~~~  560 (1082)
                      +++.| .++.+||+++|....++++. ...-.++...   ++.+++++.. ...+.+|.+...........-.+.+.+++
T Consensus        12 ssS~d~~~~~~~dl~TGt~~~~ykg~~~a~~~sl~~l---~~~yllsaq~~rp~l~vw~i~k~~~~~q~~v~Pg~v~al~   88 (476)
T KOG0646|consen   12 SSSFDPINCIVWDLRTGTSLLQYKGSYLAQAASLTAL---NNEYLLSAQLKRPLLHVWEILKKDQVVQYIVLPGPVHALA   88 (476)
T ss_pred             ccCCCCcceeEEecCCCceeEEecCcccccchhhhhh---chhheeeecccCccccccccCchhhhhhhcccccceeeee
Confidence            34444 45999999999999988865 2222222211   1145666654 45788998876554443333444455555


Q ss_pred             EccCCCeeeecccccceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEEecCCCCCCcCeEEEcCCCCEEEEEECCC
Q 001415          561 YSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDN  640 (1082)
Q Consensus       561 ~s~d~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg  640 (1082)
                      -+|+|                     .+++.|+..|.|++|.+.+|.++..+..|-.  .|+++.|+.||.++++|+.||
T Consensus        89 s~n~G---------------------~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ--~ITcL~fs~dgs~iiTgskDg  145 (476)
T KOG0646|consen   89 SSNLG---------------------YFLLAGTISGNLYLWELSSGILLNVLSAHYQ--SITCLKFSDDGSHIITGSKDG  145 (476)
T ss_pred             cCCCc---------------------eEEEeecccCcEEEEEeccccHHHHHHhhcc--ceeEEEEeCCCcEEEecCCCc
Confidence            55554                     4788887999999999999999999866544  899999999999999999999


Q ss_pred             cEEEEEecCCccceeecccccccccccccccCCCCccccCCCCceeeeccCCceeEEEecccCCCCccccccccCccccc
Q 001415          641 GIKILATSDGIRLLRTFENLAYDASRTSENSKNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRAT  720 (1082)
Q Consensus       641 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~  720 (1082)
                      .|.+|.+.+-.   .....+.                             -.-++.|.                  .|.-
T Consensus       146 ~V~vW~l~~lv---~a~~~~~-----------------------------~~p~~~f~------------------~Htl  175 (476)
T KOG0646|consen  146 AVLVWLLTDLV---SADNDHS-----------------------------VKPLHIFS------------------DHTL  175 (476)
T ss_pred             cEEEEEEEeec---ccccCCC-----------------------------ccceeeec------------------cCcc
Confidence            99999875431   1111100                             01112221                  1777


Q ss_pred             ceeEEEEccCC--ceeeecccCCeEEEeeccccccCCCCCcccccCccccCCCCcceeecccCCCCCCCCccEEEeecCC
Q 001415          721 KISRLIFTNSG--NAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKND  798 (1082)
Q Consensus       721 ~i~~~~~s~~~--~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg  798 (1082)
                      .|+++...+.|  .++++++.|.++++||+..                      |.++....    ....+.+++++|-+
T Consensus       176 sITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~----------------------g~LLlti~----fp~si~av~lDpae  229 (476)
T KOG0646|consen  176 SITDLQIGSGGTNARLYTASEDRTIKLWDLSL----------------------GVLLLTIT----FPSSIKAVALDPAE  229 (476)
T ss_pred             eeEEEEecCCCccceEEEecCCceEEEEEecc----------------------ceeeEEEe----cCCcceeEEEcccc
Confidence            78888777653  5799999999999997653                      33332222    56789999999999


Q ss_pred             CeEEEee-CCeEEEEecCCC----------------eeEEEECCCCC--CeeEEEEecCCCcEEEEEeCCCcEEEEeccc
Q 001415          799 SYVMSAS-GGKISLFNMMTF----------------KTMATFMPPPP--AATFLAFHPQDNNIIAIGMDDSSIQIYNVRV  859 (1082)
Q Consensus       799 ~~l~~~s-dg~i~iwd~~~~----------------~~~~~~~~~~~--~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~  859 (1082)
                      +.+..|+ +|.|.+.++...                .....+.+|.+  .|+|++++- |+.+|++|+.||.|+|||+.+
T Consensus       230 ~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~-DgtlLlSGd~dg~VcvWdi~S  308 (476)
T KOG0646|consen  230 RVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAIST-DGTLLLSGDEDGKVCVWDIYS  308 (476)
T ss_pred             cEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEec-CccEEEeeCCCCCEEEEecch
Confidence            9999987 699888876532                34456778888  899999999 999999999999999999999


Q ss_pred             ceeeeeecccccCEEEEEEeCCCC
Q 001415          860 DEVKSKLKGHSKRITGLAFSHALN  883 (1082)
Q Consensus       860 ~~~~~~l~~h~~~V~~l~~s~d~~  883 (1082)
                      .++++++..-.++|+.+.+.|-.+
T Consensus       309 ~Q~iRtl~~~kgpVtnL~i~~~~~  332 (476)
T KOG0646|consen  309 KQCIRTLQTSKGPVTNLQINPLER  332 (476)
T ss_pred             HHHHHHHhhhccccceeEeecccc
Confidence            999999987889999999976543

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.88  E-value=2.6e-21  Score=202.17  Aligned_cols=314  Identities=17%  Similarity=0.219  Sum_probs=226.8

Q ss_pred             EEEeeccccCeeEEEecCCCCceEEEEEeCCCcEEEEEccCCceeEEeecCCcCeEEEeeeecCCceEEEEecCCCcEEE
Q 001415          458 HLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKA  537 (1082)
Q Consensus       458 ~~~~~~h~~~V~~l~fs~dg~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~i  537 (1082)
                      ...+.||++.|.++...|.|.  +|++|+.||+|+||.+.+|.|++++. ..+.|.+++|+|.++...|+++-... +.+
T Consensus       393 ~lvyrGHtg~Vr~iSvdp~G~--wlasGsdDGtvriWEi~TgRcvr~~~-~d~~I~~vaw~P~~~~~vLAvA~~~~-~~i  468 (733)
T KOG0650|consen  393 ALVYRGHTGLVRSISVDPSGE--WLASGSDDGTVRIWEIATGRCVRTVQ-FDSEIRSVAWNPLSDLCVLAVAVGEC-VLI  468 (733)
T ss_pred             eeeEeccCCeEEEEEecCCcc--eeeecCCCCcEEEEEeecceEEEEEe-ecceeEEEEecCCCCceeEEEEecCc-eEE
Confidence            346789999999999999999  89999999999999999999999887 56789999999998876666665544 554


Q ss_pred             EecCCCCceeeecCCCCceEEEEEccCCCeeeecccccceeEEEecCCCCEEEEE----eCCCeEEEEECCCcce----E
Q 001415          538 WLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAA----GDDFSIKFWDMDSVQL----L  609 (1082)
Q Consensus       538 wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~i~~~~~~~~~~~l~~~----~~dg~i~iwd~~~~~~----~  609 (1082)
                      -+..-+.....                      +.            ....|+++    ..++.+..|.-...+.    +
T Consensus       469 vnp~~G~~~e~----------------------~~------------t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v  514 (733)
T KOG0650|consen  469 VNPIFGDRLEV----------------------GP------------TKELLASAPNESEPDAAVVTWSRASLDELEKGV  514 (733)
T ss_pred             eCccccchhhh----------------------cc------------hhhhhhcCCCccCCcccceeechhhhhhhccce
Confidence            44322211100                      00            00012222    2355677786542211    1


Q ss_pred             EEEecCCCCCCcCeEEEcCCCCEEEEEECC---CcEEEEEecCCccceeecccccccccccccccCCCCccccCCCCcee
Q 001415          610 TSIDADGGLPASPRIRFNKDGCLLAVSTND---NGIKILATSDGIRLLRTFENLAYDASRTSENSKNGDVRSLADVKPRI  686 (1082)
Q Consensus       610 ~~~~~~~~~~~i~~~~~s~dg~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~  686 (1082)
                      ...-.+  ...|..+.|+..|.||++...+   ..|.|.++.....               ...|               
T Consensus       515 ~~~I~~--~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK~~s---------------Q~PF---------------  562 (733)
T KOG0650|consen  515 CIVIKH--PKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSKRKS---------------QSPF---------------  562 (733)
T ss_pred             EEEEec--CCccceeeeecCCceEEEeccCCCcceEEEEecccccc---------------cCch---------------
Confidence            122112  2368999999999999987654   3355555433210               0001               


Q ss_pred             eeccCCceeEEEecccCCCCccccccccCcccccceeEEEEccCCceeeecccCCeEEEeeccccccCCCCCcccccCcc
Q 001415          687 TEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQ  766 (1082)
Q Consensus       687 ~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~  766 (1082)
                                                   +...+.|.++.|+|...++++++.. .|++||+..                
T Consensus       563 -----------------------------~kskG~vq~v~FHPs~p~lfVaTq~-~vRiYdL~k----------------  596 (733)
T KOG0650|consen  563 -----------------------------RKSKGLVQRVKFHPSKPYLFVATQR-SVRIYDLSK----------------  596 (733)
T ss_pred             -----------------------------hhcCCceeEEEecCCCceEEEEecc-ceEEEehhH----------------
Confidence                                         1145678899999999888877665 677776653                


Q ss_pred             ccCCCCcceeecccCCCCCCCCccEEEeecCCCeEEEee-CCeEEEEecC-CCeeEEEECCCCCCeeEEEEecCCCcEEE
Q 001415          767 LWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMM-TFKTMATFMPPPPAATFLAFHPQDNNIIA  844 (1082)
Q Consensus       767 ~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~l~~~s-dg~i~iwd~~-~~~~~~~~~~~~~~v~~l~~sp~~~~~la  844 (1082)
                            +.++...++   ....|..++.+|.|.-|+.|+ |+.+..+|+. +.++.+++..|...+++|+|++ .-.++|
T Consensus       597 ------qelvKkL~t---g~kwiS~msihp~GDnli~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~-ryPLfa  666 (733)
T KOG0650|consen  597 ------QELVKKLLT---GSKWISSMSIHPNGDNLILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHK-RYPLFA  666 (733)
T ss_pred             ------HHHHHHHhc---CCeeeeeeeecCCCCeEEEecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhcc-ccceee
Confidence                  222222222   467899999999999888887 7999999998 4467788999999999999999 888999


Q ss_pred             EEeCCCcEEEEecc------cc---eeeeeecccccC----EEEEEEeCCCCEEEEEeCCCcEEEE
Q 001415          845 IGMDDSSIQIYNVR------VD---EVKSKLKGHSKR----ITGLAFSHALNVLVSSGADSQLCVW  897 (1082)
Q Consensus       845 sg~~dg~v~iwd~~------~~---~~~~~l~~h~~~----V~~l~~s~d~~~l~s~s~Dg~i~vw  897 (1082)
                      +|+.||++.|+.-.      ..   -.+..+++|...    |....|+|...+|++++.||+|++|
T Consensus       667 s~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlf  732 (733)
T KOG0650|consen  667 SGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKTNDLGVLDTIWHPRQPWLFSAGADGTIRLF  732 (733)
T ss_pred             eecCCCcEEEEeeeeehhhhcCCceEeeeeccCceeecccceEeecccCCCceEEecCCCceEEee
Confidence            99999999998532      22   245678899876    8999999999999999999999998

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.88  E-value=1.1e-20  Score=192.06  Aligned_cols=292  Identities=15%  Similarity=0.242  Sum_probs=220.4

Q ss_pred             ccCeeEEEecCCCCceEEEEEeCCCcEEEEEcc--CCceeEEeecCCcCeEEEeeeecCCceEEEEecCCCcEEEEecCC
Q 001415          465 VGGVNDIAFSHPNKQLCVITCGDDKTIKVWDAT--NGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDN  542 (1082)
Q Consensus       465 ~~~V~~l~fs~dg~~~~l~s~s~d~~i~vwd~~--~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~  542 (1082)
                      .++|++|.|.|...  ++++++.|++++||-+.  ....++.+.-...+|.+.+|++.+. ..+++++....+..||+.+
T Consensus       213 ~~~I~sv~FHp~~p--lllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~-~~i~~s~rrky~ysyDle~  289 (514)
T KOG2055|consen  213 HGGITSVQFHPTAP--LLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGH-SVIFTSGRRKYLYSYDLET  289 (514)
T ss_pred             cCCceEEEecCCCc--eEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCc-eEEEecccceEEEEeeccc
Confidence            46899999999998  89999999999999875  3456677766778999999987543 3899999999999999976


Q ss_pred             CCceeeecCCCCceEEEEEccCCCeeeecccccceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEEecCCCCCCcC
Q 001415          543 LGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASP  622 (1082)
Q Consensus       543 ~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~  622 (1082)
                      .+....-.                  ..|.....+....+++++++++..|..|.|.+....+++.+.+++..+.   |.
T Consensus       290 ak~~k~~~------------------~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~KieG~---v~  348 (514)
T KOG2055|consen  290 AKVTKLKP------------------PYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKIEGV---VS  348 (514)
T ss_pred             cccccccC------------------CCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheeeeccE---Ee
Confidence            44332111                  1122233455566677777999999999999999999999999987765   88


Q ss_pred             eEEEcCCCCEEEEEECCCcEEEEEecCCccceeecccccccccccccccCCCCccccCCCCceeeeccCCceeEEEeccc
Q 001415          623 RIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKNGDVRSLADVKPRITEESNDKSKVWKLTEL  702 (1082)
Q Consensus       623 ~~~~s~dg~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~iw~~~~~  702 (1082)
                      .++|+.|++.|++.+.+|.|.+||++.. .+.+.+....                                         
T Consensus       349 ~~~fsSdsk~l~~~~~~GeV~v~nl~~~-~~~~rf~D~G-----------------------------------------  386 (514)
T KOG2055|consen  349 DFTFSSDSKELLASGGTGEVYVWNLRQN-SCLHRFVDDG-----------------------------------------  386 (514)
T ss_pred             eEEEecCCcEEEEEcCCceEEEEecCCc-ceEEEEeecC-----------------------------------------
Confidence            9999999999999999999999999876 3333222110                                         


Q ss_pred             CCCCccccccccCcccccceeEEEEccCCceeeecccCCeEEEeeccccccCCCCCcccccCccccCCCCcceeecccCC
Q 001415          703 SEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTD  782 (1082)
Q Consensus       703 ~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  782 (1082)
                                      .-.-++++.+.++.++++++..|.|-|||....-.+...+.+...                   
T Consensus       387 ----------------~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~-------------------  431 (514)
T KOG2055|consen  387 ----------------SVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTV-------------------  431 (514)
T ss_pred             ----------------ccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhh-------------------
Confidence                            001245677788888888888888888876533221111111110                   


Q ss_pred             CCCCCCccEEEeecCCCeEEEee---CCeEEEEecCCCeeEEEECCCC---CCeeEEEEecCCCcEEEEEeCCCcEEEEe
Q 001415          783 SNPEEAVPCFALSKNDSYVMSAS---GGKISLFNMMTFKTMATFMPPP---PAATFLAFHPQDNNIIAIGMDDSSIQIYN  856 (1082)
Q Consensus       783 ~~~~~~i~~l~~s~dg~~l~~~s---dg~i~iwd~~~~~~~~~~~~~~---~~v~~l~~sp~~~~~lasg~~dg~v~iwd  856 (1082)
                      ..-...|+++.|++|.++||.++   .+.+++-.+.+......+....   +.|+|++||| .+.++|.|..+|.|.+|.
T Consensus       432 dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP-~sG~lAvGNe~grv~l~k  510 (514)
T KOG2055|consen  432 DNLTTAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSP-NSGYLAVGNEAGRVHLFK  510 (514)
T ss_pred             hhhheeeeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecC-CCceEEeecCCCceeeEe
Confidence            11356799999999999999998   4679999998877776665443   4589999999 888999999999999998


Q ss_pred             cc
Q 001415          857 VR  858 (1082)
Q Consensus       857 ~~  858 (1082)
                      +.
T Consensus       511 L~  512 (514)
T KOG2055|consen  511 LH  512 (514)
T ss_pred             ec
Confidence            64

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.88  E-value=3.1e-20  Score=195.81  Aligned_cols=232  Identities=12%  Similarity=0.165  Sum_probs=158.1

Q ss_pred             ceeEEEEecCCCeEEEEeCCCeEEEEEccCCceeeEEEEeeccccCeeEEEecCCCCceEEEEEeCCCcEEEEEccCCce
Q 001415          422 SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAK  501 (1082)
Q Consensus       422 ~V~~l~~spdg~~las~~~d~~v~iwd~~~~~~~~~~~~~~~h~~~V~~l~fs~dg~~~~l~s~s~d~~i~vwd~~~~~~  501 (1082)
                      .|..++|-|||..|+.+. +..+.+||...|..+.   ++++|.+.|.|++|+.||+  .++||+.|+.|.+|+-+-.. 
T Consensus        14 ci~d~afkPDGsqL~lAA-g~rlliyD~ndG~llq---tLKgHKDtVycVAys~dGk--rFASG~aDK~VI~W~~klEG-   86 (1081)
T KOG1538|consen   14 CINDIAFKPDGTQLILAA-GSRLLVYDTSDGTLLQ---PLKGHKDTVYCVAYAKDGK--RFASGSADKSVIIWTSKLEG-   86 (1081)
T ss_pred             chheeEECCCCceEEEec-CCEEEEEeCCCccccc---ccccccceEEEEEEccCCc--eeccCCCceeEEEecccccc-
Confidence            899999999999998875 4569999999999777   8999999999999999999  79999999999999854322 


Q ss_pred             eEEeecCCcCeEEEeeeecCCceEEEEecCCCcEEEEecCCCCceeeecCCCCceEEEEEccCCCeeeecccccceeEEE
Q 001415          502 QYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQ  581 (1082)
Q Consensus       502 ~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~i~~~~  581 (1082)
                      +-.. .|.+.|.++.|+|-.  +.|++++.. ..-+|..+.                       +.+..-.....+.+++
T Consensus        87 ~LkY-SH~D~IQCMsFNP~~--h~LasCsLs-dFglWS~~q-----------------------K~V~K~kss~R~~~Cs  139 (1081)
T KOG1538|consen   87 ILKY-SHNDAIQCMSFNPIT--HQLASCSLS-DFGLWSPEQ-----------------------KSVSKHKSSSRIICCS  139 (1081)
T ss_pred             eeee-ccCCeeeEeecCchH--HHhhhcchh-hccccChhh-----------------------hhHHhhhhheeEEEee
Confidence            2222 399999999998765  678887753 345664432                       2111112223556667


Q ss_pred             ecCCCCEEEEEeCCCeEEEEECCCcceEEEEecCCCCCCcCeEEEcCCC-----CEEEEEECCCcEEEEEecCCccceee
Q 001415          582 FDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDG-----CLLAVSTNDNGIKILATSDGIRLLRT  656 (1082)
Q Consensus       582 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~dg-----~~l~~~~~dg~i~iwd~~~~~~~~~~  656 (1082)
                      |+.||.+++.|-.+|+|.+-+....+.+..-...+...+|.+++|+|..     ..+++.....++.++.+...  .+..
T Consensus       140 WtnDGqylalG~~nGTIsiRNk~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~--~Igk  217 (1081)
T KOG1538|consen  140 WTNDGQYLALGMFNGTISIRNKNGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGK--QIGK  217 (1081)
T ss_pred             ecCCCcEEEEeccCceEEeecCCCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecce--eecc
Confidence            7777779999999999999875433334333434455689999999953     35666666666666655322  1110


Q ss_pred             cccccccccccccccCCCCccccCCCCceeeeccCCceeEEE
Q 001415          657 FENLAYDASRTSENSKNGDVRSLADVKPRITEESNDKSKVWK  698 (1082)
Q Consensus       657 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~iw~  698 (1082)
                      -+         .+.|....+...++|++++.|+.|+.+++|.
T Consensus       218 ~r---------~L~FdP~CisYf~NGEy~LiGGsdk~L~~fT  250 (1081)
T KOG1538|consen  218 DR---------ALNFDPCCISYFTNGEYILLGGSDKQLSLFT  250 (1081)
T ss_pred             cc---------cCCCCchhheeccCCcEEEEccCCCceEEEe
Confidence            00         3344333334455555555555555555554

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.88  E-value=5.5e-21  Score=193.98  Aligned_cols=295  Identities=17%  Similarity=0.232  Sum_probs=213.6

Q ss_pred             CCCCceEEEEecCCC-eEEEEEcCCCcEEEEEccccceeeeeceeeeccCCCCcccccccccCCCCceeEEEEec-CCCe
Q 001415          357 QGSSPMSMDFHPVQQ-TLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP-DGSL  434 (1082)
Q Consensus       357 h~~~v~~~~~spdg~-~llasgs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~sp-dg~~  434 (1082)
                      +..+|++++|+|... .++|+|+..|.|-+||+.+.+.-....               ..+..|.++|.++.|+| +-..
T Consensus       185 ~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v---------------~~f~~hs~~Vs~l~F~P~n~s~  249 (498)
T KOG4328|consen  185 TDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGV---------------YLFTPHSGPVSGLKFSPANTSQ  249 (498)
T ss_pred             cccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCce---------------EEeccCCccccceEecCCChhh
Confidence            889999999999886 789999999999999996433322111               13789999999999999 6678


Q ss_pred             EEEEeCCCeEEEEEccCCceeeEEEEeeccccCeeEEEecCCCCceEEEEEeCCCcEEEEEccCCce-eEEeecCCcCeE
Q 001415          435 FGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAK-QYIFEGHEAPVY  513 (1082)
Q Consensus       435 las~~~d~~v~iwd~~~~~~~~~~~~~~~h~~~V~~l~fs~dg~~~~l~s~s~d~~i~vwd~~~~~~-~~~~~~h~~~v~  513 (1082)
                      +.+.+.||+|++-|++++..- ....+......+..+.|+.+..  .++.+..=|...+||.+++.. ...+.-|...|.
T Consensus       250 i~ssSyDGtiR~~D~~~~i~e-~v~s~~~d~~~fs~~d~~~e~~--~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~  326 (498)
T KOG4328|consen  250 IYSSSYDGTIRLQDFEGNISE-EVLSLDTDNIWFSSLDFSAESR--SVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKIT  326 (498)
T ss_pred             eeeeccCceeeeeeecchhhH-HHhhcCccceeeeeccccCCCc--cEEEeecccceEEEEeecCCccchhhhhhhcccc
Confidence            889999999999999976422 1113333455678889988888  577777777999999998654 666777999999


Q ss_pred             EEeeeecCCceEEEEecCCCcEEEEecCCCCcee----eecCCCCceEEEEEccCCCeeeecccccceeEEEecCCCCEE
Q 001415          514 SVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRV----DYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRF  589 (1082)
Q Consensus       514 ~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~----~~~~~~~~v~~~~~s~d~~~~~~~~~~~~i~~~~~~~~~~~l  589 (1082)
                      +++++|-.. .++++++.|++.+|||++......    ....|...                     +.+..|+|.+..|
T Consensus       327 sv~~NP~~p-~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~Hrrs---------------------V~sAyFSPs~gtl  384 (498)
T KOG4328|consen  327 SVALNPVCP-WFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRS---------------------VNSAYFSPSGGTL  384 (498)
T ss_pred             eeecCCCCc-hheeecccCcceeeeehhhhcCCCCcceecccccce---------------------eeeeEEcCCCCce
Confidence            999998765 799999999999999998654332    22233444                     4445555555579


Q ss_pred             EEEeCCCeEEEEECC----CcceEEEEecCCCC---CCcCeEEEcCCCCEEEEEECCCcEEEEEecCCccceeecccccc
Q 001415          590 LAAGDDFSIKFWDMD----SVQLLTSIDADGGL---PASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAY  662 (1082)
Q Consensus       590 ~~~~~dg~i~iwd~~----~~~~~~~~~~~~~~---~~i~~~~~s~dg~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~  662 (1082)
                      ++.+.|..|+|||..    ...+...+......   -.....+|.|+..++++|-.-..|-|+|...+ +.+..+.....
T Consensus       385 ~TT~~D~~IRv~dss~~sa~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~-q~v~el~~P~~  463 (498)
T KOG4328|consen  385 LTTCQDNEIRVFDSSCISAKDEPLGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGG-QMVCELHDPES  463 (498)
T ss_pred             EeeccCCceEEeecccccccCCccceeeccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCC-EEeeeccCccc
Confidence            999999999999983    33344444322211   12345789999999999999999999998777 55555444443


Q ss_pred             cccccccccCCCCccccCCCCcee-eeccCCceeEEEe
Q 001415          663 DASRTSENSKNGDVRSLADVKPRI-TEESNDKSKVWKL  699 (1082)
Q Consensus       663 ~~~~~~~~~~~~~~~~s~~~~~l~-~~~~d~~i~iw~~  699 (1082)
                      ........|       .|-+..++ -++..|.|.+|.-
T Consensus       464 ~tI~~vn~~-------HP~~~~~~aG~~s~Gki~vft~  494 (498)
T KOG4328|consen  464 STIPSVNEF-------HPMRDTLAAGGNSSGKIYVFTN  494 (498)
T ss_pred             cccccceee-------cccccceeccCCccceEEEEec
Confidence            222223444       66666444 4455678888754

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.87  E-value=6.9e-21  Score=200.88  Aligned_cols=290  Identities=13%  Similarity=0.103  Sum_probs=206.8

Q ss_pred             ceeeecccCCeEEEeeccccccCCCCCcccccCccccCCCCcceeecccCCCCCCCCccEEEeecCCCeEEEee-CCeEE
Q 001415          732 NAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKIS  810 (1082)
Q Consensus       732 ~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~l~~~s-dg~i~  810 (1082)
                      ..|+.+.++|.|.++|.....+.++..     .++.|              ..|...|..+.|-|....|++++ |.+++
T Consensus        65 HiLavadE~G~i~l~dt~~~~fr~ee~-----~lk~~--------------~aH~nAifDl~wapge~~lVsasGDsT~r  125 (720)
T KOG0321|consen   65 HILAVADEDGGIILFDTKSIVFRLEER-----QLKKP--------------LAHKNAIFDLKWAPGESLLVSASGDSTIR  125 (720)
T ss_pred             ceEEEecCCCceeeecchhhhcchhhh-----hhccc--------------ccccceeEeeccCCCceeEEEccCCceee
Confidence            457777888999999876544431111     11111              12899999999999666777776 68899


Q ss_pred             EEecCCCeeEEE--ECCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEecccce---------------------------
Q 001415          811 LFNMMTFKTMAT--FMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDE---------------------------  861 (1082)
Q Consensus       811 iwd~~~~~~~~~--~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~---------------------------  861 (1082)
                      +||+...++...  +.+|.+.|.++||.|.+...+++|+.||.|.|||+.-..                           
T Consensus       126 ~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~k  205 (720)
T KOG0321|consen  126 PWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKK  205 (720)
T ss_pred             eeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhc
Confidence            999999988877  889999999999999999999999999999999985221                           


Q ss_pred             eeeeecccccCEEE---EEEeCCCCEEEEEeC-CCcEEEEEcCCcccccc-eeeeccCCCC--CCCCCCcEEEEcCCCcE
Q 001415          862 VKSKLKGHSKRITG---LAFSHALNVLVSSGA-DSQLCVWSSDGWEKQKN-RFLQIPTGRT--PTAQSDTRVQFHQDQIH  934 (1082)
Q Consensus       862 ~~~~l~~h~~~V~~---l~~s~d~~~l~s~s~-Dg~i~vwd~~~~~~~~~-~~~~~~~~~~--~~~~~v~~~~fspdg~~  934 (1082)
                      .+...++|...|.+   +.+..|...||++|. |+.|+|||+........ .......-+.  ....++.++.....|.+
T Consensus       206 r~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~  285 (720)
T KOG0321|consen  206 RIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTY  285 (720)
T ss_pred             cccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCe
Confidence            11122345555555   566678899999998 99999999987543221 1111111111  11134566666667788


Q ss_pred             EEE-EecCeEEEEEccCcceeeeeccCCC--CcceeEEEEcCCCceEEEeecCCcEEEEecCCceeeeeeCCCeecCCCC
Q 001415          935 FLV-VHETQLAIFETTKLECVKQWVPRES--SAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGV 1011 (1082)
Q Consensus       935 l~~-~~d~~i~iwd~~~~~~~~~~~~~~h--~~~i~~l~~s~dg~~l~t~s~dg~v~vwd~~~~~~~~~~~~~~~~~~gh 1011 (1082)
                      |.+ +.|+.|+.|++.....-......++  ..--..-..|||+.+|++|+.|..+++|.+.+.+.--.+.      .||
T Consensus       286 L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l------~Gh  359 (720)
T KOG0321|consen  286 LFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALL------LGH  359 (720)
T ss_pred             EEEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccCChhhh------hCc
Confidence            887 8999999999976554433332233  1122233579999999999999999999998876653322      143


Q ss_pred             CCCCceeeEEEEeCCCCCeEEEEecCCcEEEEccCCCC
Q 001415         1012 SSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESE 1049 (1082)
Q Consensus      1012 ~~~~v~~~~~~~~~~d~~~l~s~~~dg~v~vW~~~~~~ 1049 (1082)
                         .+.+..+.|.|.+-.-++++++|-++++|++..+-
T Consensus       360 ---t~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~l  394 (720)
T KOG0321|consen  360 ---TREVTTVRWLPSATTPVATCSDDFRVKIWRLSNGL  394 (720)
T ss_pred             ---ceEEEEEeeccccCCCceeeccCcceEEEeccCch
Confidence               34566899998766679999999999999997765

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.86  E-value=4e-22  Score=212.98  Aligned_cols=236  Identities=12%  Similarity=0.304  Sum_probs=206.3

Q ss_pred             cCCCCCceEEEEecCCCeEEEEEcCCCcEEEEEccccceeeeeceeeeccCCCCcccccccccCCCCceeEEEEecCCCe
Q 001415          355 LNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSL  434 (1082)
Q Consensus       355 ~~h~~~v~~~~~spdg~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~  434 (1082)
                      ..|...|.|+..-..++ .+++|+.|..+-+|.+.....+.                   .+.+|..+|.|+.|+++..+
T Consensus        25 ~~hsaav~~lk~~~s~r-~~~~Gg~~~k~~L~~i~kp~~i~-------------------S~~~hespIeSl~f~~~E~L   84 (825)
T KOG0267|consen   25 VAHSAAVGCLKIRKSSR-SLVTGGEDEKVNLWAIGKPNAIT-------------------SLTGHESPIESLTFDTSERL   84 (825)
T ss_pred             hhhhhhhceeeeeccce-eeccCCCceeeccccccCCchhh-------------------eeeccCCcceeeecCcchhh
Confidence            34889999999866667 69999999999999986544433                   27899999999999999999


Q ss_pred             EEEEeCCCeEEEEEccCCceeeEEEEeeccccCeeEEEecCCCCceEEEEEeCCCcEEEEEccCCceeEEeecCCcCeEE
Q 001415          435 FGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYS  514 (1082)
Q Consensus       435 las~~~d~~v~iwd~~~~~~~~~~~~~~~h~~~V~~l~fs~dg~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~  514 (1082)
                      |+.|+.+|+|++||++.++.++   ++.||...+..+.|+|-+.  +.++|+.|+.+++||++...|.+.+.+|...|..
T Consensus        85 laagsasgtiK~wDleeAk~vr---tLtgh~~~~~sv~f~P~~~--~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~  159 (825)
T KOG0267|consen   85 LAAGSASGTIKVWDLEEAKIVR---TLTGHLLNITSVDFHPYGE--FFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDV  159 (825)
T ss_pred             hcccccCCceeeeehhhhhhhh---hhhccccCcceeeeccceE--EeccccccccceehhhhccCceeeecCCcceeEE
Confidence            9999999999999999998887   8999999999999999999  7899999999999999999999999999999999


Q ss_pred             EeeeecCCceEEEEecCCCcEEEEecCCCCceeeecCCCCceEEEEEccCCCeeeecccccceeEEEecCCCCEEEEEeC
Q 001415          515 VCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGD  594 (1082)
Q Consensus       515 ~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~  594 (1082)
                      +.|.|  +|.++++++.|.++++||+..++....|..|...+.++.|.|..-                     .++.|+.
T Consensus       160 l~lsP--~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~---------------------Lla~Gs~  216 (825)
T KOG0267|consen  160 LRLSP--DGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEV---------------------LLAPGSS  216 (825)
T ss_pred             EeecC--CCceeeccCCcceeeeecccccccccccccccccccccccCchhh---------------------hhccCCC
Confidence            99865  558999999999999999998888888888887777766655443                     6788999


Q ss_pred             CCeEEEEECCCcceEEEEecCCCCCCcCeEEEcCCCCEEEEEECCC
Q 001415          595 DFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDN  640 (1082)
Q Consensus       595 dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg  640 (1082)
                      |+++++||+++.+.+......  ...|.+.+|+|++..+++|....
T Consensus       217 d~tv~f~dletfe~I~s~~~~--~~~v~~~~fn~~~~~~~~G~q~s  260 (825)
T KOG0267|consen  217 DRTVRFWDLETFEVISSGKPE--TDGVRSLAFNPDGKIVLSGEQIS  260 (825)
T ss_pred             CceeeeeccceeEEeeccCCc--cCCceeeeecCCceeeecCchhh
Confidence            999999999999888877655  44799999999999998886543

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.86  E-value=2.7e-20  Score=194.71  Aligned_cols=322  Identities=14%  Similarity=0.280  Sum_probs=232.0

Q ss_pred             eeecccccceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEEecCCCCCCcCeEEEcCCCC--EEEEEECCCcEEEE
Q 001415          568 TYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGC--LLAVSTNDNGIKIL  645 (1082)
Q Consensus       568 ~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~dg~--~l~~~~~dg~i~iw  645 (1082)
                      ++.|| .+.+.++..+|.|.+|++|+.||+|+||.+.+|.++..+...+.   |.+++|+|.+.  .||++.... +.|.
T Consensus       395 vyrGH-tg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~d~~---I~~vaw~P~~~~~vLAvA~~~~-~~iv  469 (733)
T KOG0650|consen  395 VYRGH-TGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQFDSE---IRSVAWNPLSDLCVLAVAVGEC-VLIV  469 (733)
T ss_pred             eEecc-CCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEeecce---eEEEEecCCCCceeEEEEecCc-eEEe
Confidence            34444 44788888999999999999999999999999999999987764   99999999654  455544443 6666


Q ss_pred             EecCCccceeecccccccccccccccCCCCccccCCCCceee----eccCCceeEEEecccCCCC--ccccccccCcccc
Q 001415          646 ATSDGIRLLRTFENLAYDASRTSENSKNGDVRSLADVKPRIT----EESNDKSKVWKLTELSEPN--QCRSLRLPENLRA  719 (1082)
Q Consensus       646 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~----~~~d~~i~iw~~~~~~~~~--~~~~~~~~~~~~~  719 (1082)
                      +..-|.+.....                       ....++.    ...+..+..|.-.......  .+..+.     |.
T Consensus       470 np~~G~~~e~~~-----------------------t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~-----~~  521 (733)
T KOG0650|consen  470 NPIFGDRLEVGP-----------------------TKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIK-----HP  521 (733)
T ss_pred             Cccccchhhhcc-----------------------hhhhhhcCCCccCCcccceeechhhhhhhccceEEEEe-----cC
Confidence            544331111100                       0111111    1223456677655332222  122222     78


Q ss_pred             cceeEEEEccCCceeeecccC---CeEEEeeccccccCCCCCcccccCccccCCCCcceeecccCCCCCCCCccEEEeec
Q 001415          720 TKISRLIFTNSGNAILALASN---AIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSK  796 (1082)
Q Consensus       720 ~~i~~~~~s~~~~~l~~~~~d---~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~  796 (1082)
                      ..|..+.|+..|.+|++...+   ..+.|+++.....                   ..    .+.  ...+.|.++.|+|
T Consensus       522 k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK~~s-------------------Q~----PF~--kskG~vq~v~FHP  576 (733)
T KOG0650|consen  522 KSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSKRKS-------------------QS----PFR--KSKGLVQRVKFHP  576 (733)
T ss_pred             CccceeeeecCCceEEEeccCCCcceEEEEecccccc-------------------cC----chh--hcCCceeEEEecC
Confidence            899999999999999988774   5677776543211                   10    111  1467788999999


Q ss_pred             CCCeEEEeeCCeEEEEecCCCeeEEEECCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEecccc-eeeeeecccccCEEE
Q 001415          797 NDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVD-EVKSKLKGHSKRITG  875 (1082)
Q Consensus       797 dg~~l~~~sdg~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~-~~~~~l~~h~~~V~~  875 (1082)
                      ...++++++...|+|||+..+..+..+......|..++++| .|.-|+.|+.|+.+..+|+.-+ +..++++.|...|++
T Consensus       577 s~p~lfVaTq~~vRiYdL~kqelvKkL~tg~kwiS~msihp-~GDnli~gs~d~k~~WfDldlsskPyk~lr~H~~avr~  655 (733)
T KOG0650|consen  577 SKPYLFVATQRSVRIYDLSKQELVKKLLTGSKWISSMSIHP-NGDNLILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRS  655 (733)
T ss_pred             CCceEEEEeccceEEEehhHHHHHHHHhcCCeeeeeeeecC-CCCeEEEecCCCeeEEEEcccCcchhHHhhhhhhhhhh
Confidence            99999999999999999999888888888888899999999 8888888999999999999854 677889999999999


Q ss_pred             EEEeCCCCEEEEEeCCCcEEEEEcCCcccccceeeeccCCCCCCCCCCcEEEEcCCCcEEEEEecCeEEEEEccCcceee
Q 001415          876 LAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVK  955 (1082)
Q Consensus       876 l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~~d~~i~iwd~~~~~~~~  955 (1082)
                      ++|++.-.++++|+.||++.|+.-.-..    -+++.+                                      -.+.
T Consensus       656 Va~H~ryPLfas~sdDgtv~Vfhg~VY~----Dl~qnp--------------------------------------liVP  693 (733)
T KOG0650|consen  656 VAFHKRYPLFASGSDDGTVIVFHGMVYN----DLLQNP--------------------------------------LIVP  693 (733)
T ss_pred             hhhccccceeeeecCCCcEEEEeeeeeh----hhhcCC--------------------------------------ceEe
Confidence            9999999999999999999988422110    000000                                      0011


Q ss_pred             eeccCCCC----cceeEEEEcCCCceEEEeecCCcEEEE
Q 001415          956 QWVPRESS----APITHATFSCDSQLVYACFLDATVCVF  990 (1082)
Q Consensus       956 ~~~~~~h~----~~i~~l~~s~dg~~l~t~s~dg~v~vw  990 (1082)
                      .-...+|.    ..|....|.|..-+|++++.||+|++|
T Consensus       694 lK~L~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlf  732 (733)
T KOG0650|consen  694 LKRLRGHEKTNDLGVLDTIWHPRQPWLFSAGADGTIRLF  732 (733)
T ss_pred             eeeccCceeecccceEeecccCCCceEEecCCCceEEee
Confidence            11112443    348889999999999999999999998

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.86  E-value=4.5e-22  Score=212.61  Aligned_cols=237  Identities=18%  Similarity=0.258  Sum_probs=201.9

Q ss_pred             ccCCCCceeEEEEecCCCeEEEEeCCCeEEEEEccCCceeeEEEEeeccccCeeEEEecCCCCceEEEEEeCCCcEEEEE
Q 001415          416 VKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWD  495 (1082)
Q Consensus       416 ~~~h~~~V~~l~~spdg~~las~~~d~~v~iwd~~~~~~~~~~~~~~~h~~~V~~l~fs~dg~~~~l~s~s~d~~i~vwd  495 (1082)
                      ...|...|.|+..-..++.+++|+.|..+-+|.+..-..+.   .+.+|..+|.++.|+++..  +|++|+.+|+|++||
T Consensus        24 ~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~---S~~~hespIeSl~f~~~E~--LlaagsasgtiK~wD   98 (825)
T KOG0267|consen   24 FVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAIT---SLTGHESPIESLTFDTSER--LLAAGSASGTIKVWD   98 (825)
T ss_pred             hhhhhhhhceeeeeccceeeccCCCceeeccccccCCchhh---eeeccCCcceeeecCcchh--hhcccccCCceeeee
Confidence            55688899999987789999999999999999987655444   6889999999999999988  899999999999999


Q ss_pred             ccCCceeEEeecCCcCeEEEeeeecCCceEEEEecCCCcEEEEecCCCCceeeecCCCCceEEEEEccCCCeeeeccccc
Q 001415          496 ATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKR  575 (1082)
Q Consensus       496 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~  575 (1082)
                      ++.++.++++.||...+.++.|+|..  .+.++|+.|..+++||.+...+...+..|...+..+.|+|+|+         
T Consensus        99 leeAk~vrtLtgh~~~~~sv~f~P~~--~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr---------  167 (825)
T KOG0267|consen   99 LEEAKIVRTLTGHLLNITSVDFHPYG--EFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDGR---------  167 (825)
T ss_pred             hhhhhhhhhhhccccCcceeeeccce--EEeccccccccceehhhhccCceeeecCCcceeEEEeecCCCc---------
Confidence            99999999999999999999998765  7889999999999999998888888888777777777777776         


Q ss_pred             ceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEecCCcccee
Q 001415          576 SLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLR  655 (1082)
Q Consensus       576 ~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~iwd~~~~~~~~~  655 (1082)
                                  +++.+++|.+++|||+..|+.+..+..|..  .+.++.|+|..-+++.|+.|+++++||+++- +.+.
T Consensus       168 ------------~v~~g~ed~tvki~d~~agk~~~ef~~~e~--~v~sle~hp~e~Lla~Gs~d~tv~f~dletf-e~I~  232 (825)
T KOG0267|consen  168 ------------WVASGGEDNTVKIWDLTAGKLSKEFKSHEG--KVQSLEFHPLEVLLAPGSSDRTVRFWDLETF-EVIS  232 (825)
T ss_pred             ------------eeeccCCcceeeeecccccccccccccccc--cccccccCchhhhhccCCCCceeeeecccee-EEee
Confidence                        889999999999999999999999987765  6888999999999999999999999999865 4444


Q ss_pred             ecccccccccccccccCCCCccccCCCCceeeeccCC
Q 001415          656 TFENLAYDASRTSENSKNGDVRSLADVKPRITEESND  692 (1082)
Q Consensus       656 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~  692 (1082)
                      ........+.  +..|       .+++..+++|....
T Consensus       233 s~~~~~~~v~--~~~f-------n~~~~~~~~G~q~s  260 (825)
T KOG0267|consen  233 SGKPETDGVR--SLAF-------NPDGKIVLSGEQIS  260 (825)
T ss_pred             ccCCccCCce--eeee-------cCCceeeecCchhh
Confidence            4444333333  5555       78888887776543

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.85  E-value=2e-20  Score=201.97  Aligned_cols=284  Identities=15%  Similarity=0.262  Sum_probs=206.2

Q ss_pred             CCCCceeeeccCCceeEEEecccCCCCccccccccCcccccceeEEEEcc-CCceeeecccCCeEEEeeccccccCCCCC
Q 001415          680 ADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTN-SGNAILALASNAIHLLWKWQRTERNSSGK  758 (1082)
Q Consensus       680 ~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~-~~~~l~~~~~d~~i~iw~~~~~~~~~~~~  758 (1082)
                      ++-..++.++. ..++++.+........+..-.-........+..+.|.. +.++|++++.+|.|.+||+.....+    
T Consensus        49 r~~~qiv~AGr-s~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~rn----  123 (839)
T KOG0269|consen   49 RDINQIVVAGR-SLLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSNLIATCSTNGVISVWDLNKSIRN----  123 (839)
T ss_pred             CCcceeEEecc-cceeeEeeCcccCCcceeeecccccceeeehhhcccccchhhhheeecCCCcEEEEecCccccc----
Confidence            44444444443 45566666544333332221100011122344566653 3578999999999999998742111    


Q ss_pred             cccccCccccCCCCcceeecccCCCCCCCCccEEEeecCCC-eEEEee-CCeEEEEecCCCeeEEEECCCCCCeeEEEEe
Q 001415          759 ATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDS-YVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFH  836 (1082)
Q Consensus       759 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~-~l~~~s-dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s  836 (1082)
                                     +.+.   ...+|...+.++.|++-.. +|++|+ ||.|++||++..+-..++.+....|..|.|+
T Consensus       124 ---------------k~l~---~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fs  185 (839)
T KOG0269|consen  124 ---------------KLLT---VFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFS  185 (839)
T ss_pred             ---------------hhhh---HhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccccchhhhceeec
Confidence                           0100   1123999999999997554 677777 7999999999999999999988999999999


Q ss_pred             cCCCcEEEEEeCCCcEEEEecccc-eeeeeecccccCEEEEEEeCCCCEEEEEeCCCcEEEEEcCCcccccceeeeccCC
Q 001415          837 PQDNNIIAIGMDDSSIQIYNVRVD-EVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTG  915 (1082)
Q Consensus       837 p~~~~~lasg~~dg~v~iwd~~~~-~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~  915 (1082)
                      |..+..++++.+.|.+++||++.. ++...+.+|.++|.|+.|+|++.+|||||.|++|+||++.+.+......+...  
T Consensus       186 p~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tInTi--  263 (839)
T KOG0269|consen  186 PGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTINTI--  263 (839)
T ss_pred             cCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCccceeEEeec--
Confidence            988899999999999999999864 67788899999999999999999999999999999999998655433333332  


Q ss_pred             CCCCCCCCcEEEEcCCCcEEE-EE---ecCeEEEEEccCcce-eeeeccCCCCcceeEEEEcC-CCceEEEeecCCcEEE
Q 001415          916 RTPTAQSDTRVQFHQDQIHFL-VV---HETQLAIFETTKLEC-VKQWVPRESSAPITHATFSC-DSQLVYACFLDATVCV  989 (1082)
Q Consensus       916 ~~~~~~~v~~~~fspdg~~l~-~~---~d~~i~iwd~~~~~~-~~~~~~~~h~~~i~~l~~s~-dg~~l~t~s~dg~v~v  989 (1082)
                           ..+..++|-|+..+.+ ++   .|-.|+|||+...-. ..++  ..|...++.++|-. |...|.+++.||+|..
T Consensus       264 -----apv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~--~eH~~~vt~i~W~~~d~~~l~s~sKD~tv~q  336 (839)
T KOG0269|consen  264 -----APVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATF--LEHTDSVTGIAWDSGDRINLWSCSKDGTVLQ  336 (839)
T ss_pred             -----ceeeeeeeccCccchhhhhhccccceEEEEeeccccccceee--eccCccccceeccCCCceeeEeecCccHHHH
Confidence                 5689999999877654 43   678999999864432 2233  37899999999965 5667889999999876


Q ss_pred             EecCCc
Q 001415          990 FSAANL  995 (1082)
Q Consensus       990 wd~~~~  995 (1082)
                      -.+.+.
T Consensus       337 h~~kna  342 (839)
T KOG0269|consen  337 HLFKNA  342 (839)
T ss_pred             hhhhcc
Confidence            555443

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.85  E-value=3.3e-19  Score=178.69  Aligned_cols=171  Identities=20%  Similarity=0.262  Sum_probs=140.2

Q ss_pred             CCCCceEEEEecCCCeEEEEEcCCCcEEEEEccccceeeeeceeeeccCCCCcccccccccCCCCceeEEEEecCCCeEE
Q 001415          357 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFG  436 (1082)
Q Consensus       357 h~~~v~~~~~spdg~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la  436 (1082)
                      ...+|..+.|.+++...+|||+.|..|+||.++.+..-...         .... -...+..|...|+++.|+|+|..||
T Consensus        12 ~~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~---------~~V~-y~s~Ls~H~~aVN~vRf~p~gelLA   81 (434)
T KOG1009|consen   12 DHEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGD---------MKVE-YLSSLSRHTRAVNVVRFSPDGELLA   81 (434)
T ss_pred             CCCceEEEEeccCcccceecccCccceeeeeeeecCCCCCc---------eeEE-EeecccCCcceeEEEEEcCCcCeee
Confidence            45789999999988755999999999999999765432200         0011 1225889999999999999999999


Q ss_pred             EEeCCCeEEEEEcc--------C-----CceeeEEEEeeccccCeeEEEecCCCCceEEEEEeCCCcEEEEEccCCceeE
Q 001415          437 VAYSRHIVQIYSYH--------G-----GDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQY  503 (1082)
Q Consensus       437 s~~~d~~v~iwd~~--------~-----~~~~~~~~~~~~h~~~V~~l~fs~dg~~~~l~s~s~d~~i~vwd~~~~~~~~  503 (1082)
                      +|+.+|.|.+|-..        +     .+.......+.+|...|..++|+|++.  ++++++.|.++++||+..|..+.
T Consensus        82 Sg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~--~l~s~s~dns~~l~Dv~~G~l~~  159 (434)
T KOG1009|consen   82 SGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSN--FLVSGSVDNSVRLWDVHAGQLLA  159 (434)
T ss_pred             ecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCc--eeeeeeccceEEEEEeccceeEe
Confidence            99999999999776        3     222233446889999999999999999  89999999999999999999999


Q ss_pred             EeecCCcCeEEEeeeecCCceEEEEecCCCcEEEEecC
Q 001415          504 IFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYD  541 (1082)
Q Consensus       504 ~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~  541 (1082)
                      .+.+|..-|..++|.|-.  +++++-+.|...+.+.+.
T Consensus       160 ~~~dh~~yvqgvawDpl~--qyv~s~s~dr~~~~~~~~  195 (434)
T KOG1009|consen  160 ILDDHEHYVQGVAWDPLN--QYVASKSSDRHPEGFSAK  195 (434)
T ss_pred             eccccccccceeecchhh--hhhhhhccCcccceeeee
Confidence            999999999999997655  799999998866666544

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.85  E-value=3.6e-17  Score=189.93  Aligned_cols=372  Identities=24%  Similarity=0.419  Sum_probs=267.6

Q ss_pred             eecCCCCCceEEEEecCCCeEEEEEcCCCcEEEEEccccc-eeeeeceeeeccCCCCcccccccccCCC-CceeEEEE-e
Q 001415          353 RTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRE-RLVLRNFKVWDLGACSMPLQAALVKDPG-VSVNRVIW-S  429 (1082)
Q Consensus       353 ~~~~h~~~v~~~~~spdg~~llasgs~dg~i~iwd~~~~~-~~~~~~~~~~d~~~~~~~~~~~~~~~h~-~~V~~l~~-s  429 (1082)
                      ....|...+.++.|.+.+.. ++.++.|+.+.+|+...+. ....                   +.++. ..+..+.+ +
T Consensus        60 ~~~~~~~~i~~~~~~~~~~~-~~~~~~d~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~  119 (466)
T COG2319          60 LLRGHEDSITSIAFSPDGEL-LLSGSSDGTIKLWDLDNGEKLIKS-------------------LEGLHDSSVSKLALSS  119 (466)
T ss_pred             eeeeccceEEEEEECCCCcE-EEEecCCCcEEEEEcCCCceeEEE-------------------EeccCCCceeeEEEEC
Confidence            45669999999999999994 8888899999999998876 3321                   33322 47777777 8


Q ss_pred             cCCC-eEEEEeC-CCeEEEEEccC-CceeeEEEEeeccccCeeEEEecCCCCceEEEEEeC-CCcEEEEEccCCceeEEe
Q 001415          430 PDGS-LFGVAYS-RHIVQIYSYHG-GDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGD-DKTIKVWDATNGAKQYIF  505 (1082)
Q Consensus       430 pdg~-~las~~~-d~~v~iwd~~~-~~~~~~~~~~~~h~~~V~~l~fs~dg~~~~l~s~s~-d~~i~vwd~~~~~~~~~~  505 (1082)
                      +++. +++..+. |+.+.+|+... .....   .+..|...|..++|+|++.  ++++++. |+.+++|++..+..+..+
T Consensus       120 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~---~~~~~~~~v~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~  194 (466)
T COG2319         120 PDGNSILLASSSLDGTVKLWDLSTPGKLIR---TLEGHSESVTSLAFSPDGK--LLASGSSLDGTIKLWDLRTGKPLSTL  194 (466)
T ss_pred             CCcceEEeccCCCCccEEEEEecCCCeEEE---EEecCcccEEEEEECCCCC--EEEecCCCCCceEEEEcCCCceEEee
Confidence            8888 5555444 89999999997 44443   6889999999999999999  6788775 999999999999999999


Q ss_pred             ecCCcCeEEEeeeecCCceEEEEecCCCcEEEEecCCCCcee-eecCCCCceEEEEEccCCCeeeecccccceeEEEecC
Q 001415          506 EGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRV-DYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDT  584 (1082)
Q Consensus       506 ~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~-~~~~~~~~v~~~~~s~d~~~~~~~~~~~~i~~~~~~~  584 (1082)
                      .+|...|.++.|.+... ..+++++.|+.|++||........ .+..+.... ..                     .|++
T Consensus       195 ~~~~~~v~~~~~~~~~~-~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~---------------------~~~~  251 (466)
T COG2319         195 AGHTDPVSSLAFSPDGG-LLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VS---------------------SFSP  251 (466)
T ss_pred             ccCCCceEEEEEcCCcc-eEEEEecCCCcEEEEECCCCcEEeeecCCCCcce-eE---------------------eECC
Confidence            99999999999984432 255555999999999877443333 233333322 11                     4555


Q ss_pred             CCCEEEEEeCCCeEEEEECCCcce-EEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEecCCccceeeccccccc
Q 001415          585 TKNRFLAAGDDFSIKFWDMDSVQL-LTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYD  663 (1082)
Q Consensus       585 ~~~~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~  663 (1082)
                      ++..+++++.|+.+++|+...... +..+..+  ...+.++.|+|++..+++++.|+.+.+|+..+..... ...     
T Consensus       252 ~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~-~~~-----  323 (466)
T COG2319         252 DGSLLASGSSDGTIRLWDLRSSSSLLRTLSGH--SSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLS-SLT-----  323 (466)
T ss_pred             CCCEEEEecCCCcEEEeeecCCCcEEEEEecC--CccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEE-Eee-----
Confidence            555788999999999999987665 4444333  4478899999988888888888889999765541110 000     


Q ss_pred             ccccccccCCCCccccCCCCceeeeccCCceeEEEecccCCCCccccccccCcccccceeEEEEccCCceeeecccCCeE
Q 001415          664 ASRTSENSKNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIH  743 (1082)
Q Consensus       664 ~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i  743 (1082)
                                                         .                .                           
T Consensus       324 -----------------------------------~----------------~---------------------------  325 (466)
T COG2319         324 -----------------------------------L----------------K---------------------------  325 (466)
T ss_pred             -----------------------------------e----------------c---------------------------
Confidence                                               0                0                           


Q ss_pred             EEeeccccccCCCCCcccccCccccCCCCcceeecccCCCCCCCCccEEEeecCCCeEEEe--eCCeEEEEecCCCeeEE
Q 001415          744 LLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSA--SGGKISLFNMMTFKTMA  821 (1082)
Q Consensus       744 ~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~l~~~--sdg~i~iwd~~~~~~~~  821 (1082)
                                                              .|...+..+.+.+++..++.+  .++.+.+|+........
T Consensus       326 ----------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~  365 (466)
T COG2319         326 ----------------------------------------GHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLK  365 (466)
T ss_pred             ----------------------------------------ccCCceEEEEECCCCCEEEEeecCCCcEEeeecCCCceeE
Confidence                                                    022223334442121233333  24566677777665222


Q ss_pred             EECCCCCCeeEEEEecCCCcEEEE-EeCCCcEEEEecccceeeeeecccccCEEEEEEeCCCCEEEEEeCCCcEEEEEcC
Q 001415          822 TFMPPPPAATFLAFHPQDNNIIAI-GMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSD  900 (1082)
Q Consensus       822 ~~~~~~~~v~~l~~sp~~~~~las-g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~  900 (1082)
                      ...... .+..+.+++ + ..++. +..++.+.+|+............+...+....+++++..+++++.++.+++|+..
T Consensus       366 ~~~~~~-~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  442 (466)
T COG2319         366 TLEGHS-NVLSVSFSP-D-GRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRLWDLK  442 (466)
T ss_pred             EecCCc-eEEEEEECC-C-CCEEEEecCCCceEEEecccCeeeeeccCCCCcEEEEEECCCCcEEEEecCCCcEEEEecc
Confidence            222222 288899988 7 55554 7889999999999888777766554789999999999999999999999999988


Q ss_pred             C
Q 001415          901 G  901 (1082)
Q Consensus       901 ~  901 (1082)
                      .
T Consensus       443 ~  443 (466)
T COG2319         443 T  443 (466)
T ss_pred             C
Confidence            7

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.85  E-value=1.5e-19  Score=179.07  Aligned_cols=269  Identities=15%  Similarity=0.248  Sum_probs=193.7

Q ss_pred             CcceeeecCCCCCceEEEEecCCC-eEEEEEcCCCcEEEEEccccce-eeeeceeeeccCCCCcccccccccCCCCceeE
Q 001415          348 PKTVTRTLNQGSSPMSMDFHPVQQ-TLLLVGTNVGDIGLWEVGSRER-LVLRNFKVWDLGACSMPLQAALVKDPGVSVNR  425 (1082)
Q Consensus       348 ~~~~~~~~~h~~~v~~~~~spdg~-~llasgs~dg~i~iwd~~~~~~-~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~  425 (1082)
                      |..-.+.++|.+.++.+.-++-|+ .+.|+=+..|.|.||++...-. +......+.+    +...+...+.+|.+.=+.
T Consensus       141 P~~~~~~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~----s~~~Pl~t~~ghk~EGy~  216 (440)
T KOG0302|consen  141 PQIEMKSIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKD----SEFRPLFTFNGHKGEGYG  216 (440)
T ss_pred             ccccccccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccc----cccCceEEecccCcccee
Confidence            444457778999999999998763 3677778889999999854211 1111111111    111122247899999999


Q ss_pred             EEEec-CCCeEEEEeCCCeEEEEEccCCceeeEEEEeeccccCeeEEEecCCCCceEEEEEeCCCcEEEEEccCC---ce
Q 001415          426 VIWSP-DGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNG---AK  501 (1082)
Q Consensus       426 l~~sp-dg~~las~~~d~~v~iwd~~~~~~~~~~~~~~~h~~~V~~l~fs~dg~~~~l~s~s~d~~i~vwd~~~~---~~  501 (1082)
                      |+||| .-..|++|..-+.|++|...+|.-..-...+.+|+..|-.++|||.... +|+|||.||+|+|||++++   .+
T Consensus       217 LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~-vfaScS~DgsIrIWDiRs~~~~~~  295 (440)
T KOG0302|consen  217 LDWSPIKTGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDG-VFASCSCDGSIRIWDIRSGPKKAA  295 (440)
T ss_pred             eecccccccccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCc-eEEeeecCceEEEEEecCCCccce
Confidence            99999 3335788888888999999987654444457789999999999999887 8999999999999999988   34


Q ss_pred             eEEeecCCcCeEEEeeeecCCceEEEEecCCCcEEEEecCCCC---ceeeecCCCCceEEEEEccCCCeeeeccccccee
Q 001415          502 QYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLG---SRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLG  578 (1082)
Q Consensus       502 ~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~---~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~i~  578 (1082)
                      +.+ +.|.+.|+.+.|+...  .+|++|+.||+++|||++..+   ++..+..|..+|+++.|+|...            
T Consensus       296 ~~~-kAh~sDVNVISWnr~~--~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~------------  360 (440)
T KOG0302|consen  296 VST-KAHNSDVNVISWNRRE--PLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHED------------  360 (440)
T ss_pred             eEe-eccCCceeeEEccCCc--ceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccC------------
Confidence            444 7899999999997655  499999999999999998643   3446666777777777766543            


Q ss_pred             EEEecCCCCEEEEEeCCCeEEEEECCCcce----------------EEEEecCCCCCCcCeEEEcCC-CCEEEEEECCCc
Q 001415          579 VVQFDTTKNRFLAAGDDFSIKFWDMDSVQL----------------LTSIDADGGLPASPRIRFNKD-GCLLAVSTNDNG  641 (1082)
Q Consensus       579 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~----------------~~~~~~~~~~~~i~~~~~s~d-g~~l~~~~~dg~  641 (1082)
                              ..|++++.|..|.+||+....-                -+.+-.|.+...+..+.|++. ..+|++.+.||.
T Consensus       361 --------s~iaasg~D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dGf  432 (440)
T KOG0302|consen  361 --------SVIAASGEDNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDGF  432 (440)
T ss_pred             --------ceEEeccCCCcEEEEEeeccCChhhhccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEecccce
Confidence                    3578889999999999853211                112223444446788999984 346666666663


Q ss_pred             EEEE
Q 001415          642 IKIL  645 (1082)
Q Consensus       642 i~iw  645 (1082)
                       .||
T Consensus       433 -nVf  435 (440)
T KOG0302|consen  433 -NVF  435 (440)
T ss_pred             -eEE
Confidence             444

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.84  E-value=1.3e-20  Score=203.31  Aligned_cols=244  Identities=13%  Similarity=0.221  Sum_probs=189.8

Q ss_pred             CceEEEEecCCCeEEEEEcCCCcEEEEEccc---cceeeeeceeeeccCCCCcccccccccCCCCceeEEEEec-CCCeE
Q 001415          360 SPMSMDFHPVQQTLLLVGTNVGDIGLWEVGS---RERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP-DGSLF  435 (1082)
Q Consensus       360 ~v~~~~~spdg~~llasgs~dg~i~iwd~~~---~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~sp-dg~~l  435 (1082)
                      .+..|+|+.--..|||+++..|.|.+||+..   .+.+.                   .+..|+..|+++.|++ ...+|
T Consensus        89 S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~-------------------~f~EH~Rs~~~ldfh~tep~il  149 (839)
T KOG0269|consen   89 SAADVKWGQLYSNLIATCSTNGVISVWDLNKSIRNKLLT-------------------VFNEHERSANKLDFHSTEPNIL  149 (839)
T ss_pred             ehhhcccccchhhhheeecCCCcEEEEecCccccchhhh-------------------HhhhhccceeeeeeccCCccEE
Confidence            4455677754455899999999999999976   22221                   4889999999999999 56788


Q ss_pred             EEEeCCCeEEEEEccCCceeeEEEEeeccccCeeEEEecCCCCceEEEEEeCCCcEEEEEccC-CceeEEeecCCcCeEE
Q 001415          436 GVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATN-GAKQYIFEGHEAPVYS  514 (1082)
Q Consensus       436 as~~~d~~v~iwd~~~~~~~~~~~~~~~h~~~V~~l~fs~dg~~~~l~s~s~d~~i~vwd~~~-~~~~~~~~~h~~~v~~  514 (1082)
                      ++|+.||+|++||+...+...   ++.+....|..|.|+|.... .++++.+.|.+++||++. .++...+.+|.++|.+
T Consensus       150 iSGSQDg~vK~~DlR~~~S~~---t~~~nSESiRDV~fsp~~~~-~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c  225 (839)
T KOG0269|consen  150 ISGSQDGTVKCWDLRSKKSKS---TFRSNSESIRDVKFSPGYGN-KFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLC  225 (839)
T ss_pred             EecCCCceEEEEeeecccccc---cccccchhhhceeeccCCCc-eEEEecCCceEEEeeccCchhHHHHhhcccCceEE
Confidence            999999999999999887655   67788999999999997666 899999999999999986 4567788999999999


Q ss_pred             EeeeecCCceEEEEecCCCcEEEEecCCCCceeeecC-CCCceEEEEEccCCCeeeecccccceeEEEecCCCCEEEEEe
Q 001415          515 VCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEA-PGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAG  593 (1082)
Q Consensus       515 ~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-~~~~v~~~~~s~d~~~~~~~~~~~~i~~~~~~~~~~~l~~~~  593 (1082)
                      +.|+|  ++.+||+||.|+.|+|||+.+.+....... ...++..+.|-|+..                    .+|++++
T Consensus       226 ~nwhP--nr~~lATGGRDK~vkiWd~t~~~~~~~~tInTiapv~rVkWRP~~~--------------------~hLAtcs  283 (839)
T KOG0269|consen  226 LNWHP--NREWLATGGRDKMVKIWDMTDSRAKPKHTINTIAPVGRVKWRPARS--------------------YHLATCS  283 (839)
T ss_pred             EeecC--CCceeeecCCCccEEEEeccCCCccceeEEeecceeeeeeeccCcc--------------------chhhhhh
Confidence            99998  447999999999999999987554433332 234566667766654                    2456554


Q ss_pred             --CCCeEEEEECCCc-ceEEEEecCCCCCCcCeEEEcC-CCCEEEEEECCCcEEEEEecCC
Q 001415          594 --DDFSIKFWDMDSV-QLLTSIDADGGLPASPRIRFNK-DGCLLAVSTNDNGIKILATSDG  650 (1082)
Q Consensus       594 --~dg~i~iwd~~~~-~~~~~~~~~~~~~~i~~~~~s~-dg~~l~~~~~dg~i~iwd~~~~  650 (1082)
                        .|-.|+|||++.. -+..++..|..  .++.++|.. |...+.+++.||++..-...++
T Consensus       284 mv~dtsV~VWDvrRPYIP~~t~~eH~~--~vt~i~W~~~d~~~l~s~sKD~tv~qh~~kna  342 (839)
T KOG0269|consen  284 MVVDTSVHVWDVRRPYIPYATFLEHTD--SVTGIAWDSGDRINLWSCSKDGTVLQHLFKNA  342 (839)
T ss_pred             ccccceEEEEeeccccccceeeeccCc--cccceeccCCCceeeEeecCccHHHHhhhhcc
Confidence              6889999999754 34556665554  678888866 5667888889988765444443

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.84  E-value=1.8e-18  Score=167.04  Aligned_cols=285  Identities=15%  Similarity=0.216  Sum_probs=190.7

Q ss_pred             cccCCCCceeEEEEecCCCeEEEEeCCCeEEEEEccCC-ceeeEEEEeeccccCeeEEEecCC--CCceEEEEEeCCCcE
Q 001415          415 LVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGG-DEVRQHLEIDAHVGGVNDIAFSHP--NKQLCVITCGDDKTI  491 (1082)
Q Consensus       415 ~~~~h~~~V~~l~~spdg~~las~~~d~~v~iwd~~~~-~~~~~~~~~~~h~~~V~~l~fs~d--g~~~~l~s~s~d~~i  491 (1082)
                      +-.+|.+-|.|+.|.+-|+.+|+|+.|++|+|||.... .........+.|.+.|..+.|.+.  |+  .+|+++.|+++
T Consensus         8 i~s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGq--vvA~cS~Drtv   85 (361)
T KOG2445|consen    8 IDSGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQ--VVATCSYDRTV   85 (361)
T ss_pred             cccCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccc--eEEEEecCCce
Confidence            35689999999999999999999999999999996433 234445578899999999999764  56  89999999999


Q ss_pred             EEEEccC---------CceeEEeecCCcCeEEEeeeecCCceEEEEecCCCcEEEEecCCCCceeeecCCCCceEEEEEc
Q 001415          492 KVWDATN---------GAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYS  562 (1082)
Q Consensus       492 ~vwd~~~---------~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s  562 (1082)
                      .||.=..         -....++......|+.++|.|..-|-.+++++.||.+|||+.-........+... .+.-+ ..
T Consensus        86 ~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~-Ei~~~-~~  163 (361)
T KOG2445|consen   86 SIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQH-EIQNV-ID  163 (361)
T ss_pred             eeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhh-hhhhc-cC
Confidence            9997421         1233466677889999999999989999999999999999876543332221110 00000 00


Q ss_pred             cCCCeeeecccccceeEEEecCC---CCEEEEEeCC-----CeEEEEECCCc--ceEEEEecCCCCCCcCeEEEcCC---
Q 001415          563 ADGTRTYQGFRKRSLGVVQFDTT---KNRFLAAGDD-----FSIKFWDMDSV--QLLTSIDADGGLPASPRIRFNKD---  629 (1082)
Q Consensus       563 ~d~~~~~~~~~~~~i~~~~~~~~---~~~l~~~~~d-----g~i~iwd~~~~--~~~~~~~~~~~~~~i~~~~~s~d---  629 (1082)
                      |-      +.......|+.|++.   ...|++|+.+     +.+.||....+  +....-...++..+|+.++|.|+   
T Consensus       164 pp------~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr  237 (361)
T KOG2445|consen  164 PP------GKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGR  237 (361)
T ss_pred             Cc------ccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCC
Confidence            11      111223344555543   2356666654     47888876543  33333333355568999999995   


Q ss_pred             -CCEEEEEECCCcEEEEEecCCccceeecccccccccccccccCCCCccccCCCCceeeeccCCceeEEEecccCCCCcc
Q 001415          630 -GCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQC  708 (1082)
Q Consensus       630 -g~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~  708 (1082)
                       -..||+++.|| |+||.+......+..- +    ..             .++.        -..+.+-.+.        
T Consensus       238 ~y~~lAvA~kDg-v~I~~v~~~~s~i~~e-e----~~-------------~~~~--------~~~l~v~~vs--------  282 (361)
T KOG2445|consen  238 SYHLLAVATKDG-VRIFKVKVARSAIEEE-E----VL-------------APDL--------MTDLPVEKVS--------  282 (361)
T ss_pred             ceeeEEEeecCc-EEEEEEeeccchhhhh-c----cc-------------CCCC--------ccccceEEee--------
Confidence             35799999999 9999987542211000 0    00             0000        0000000000        


Q ss_pred             ccccccCcccccceeEEEEccCCceeeecccCCeEEEeecc
Q 001415          709 RSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQ  749 (1082)
Q Consensus       709 ~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iw~~~  749 (1082)
                         .+  ..|.++|..+.|+-.|..|.+.+.||.+++|...
T Consensus       283 ---~~--~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkan  318 (361)
T KOG2445|consen  283 ---EL--DDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKAN  318 (361)
T ss_pred             ---ec--cCCCCceEEEEEeeeeeEEeecCCCceeeehhhh
Confidence               01  2288999999999999999999999999999644

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.84  E-value=2.1e-19  Score=174.92  Aligned_cols=301  Identities=15%  Similarity=0.209  Sum_probs=205.1

Q ss_pred             cccceeEEEEcc----CCceeeecccCCeEEEeeccccccCCCCCcccccCccccCCCCcceeecccCCCCCCCCccEEE
Q 001415          718 RATKISRLIFTN----SGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFA  793 (1082)
Q Consensus       718 ~~~~i~~~~~s~----~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~  793 (1082)
                      |..+|..++|++    +...+++......+.+|+.....                    +..+-.......+......++
T Consensus        37 ~~~~I~gv~fN~~~~~~e~~vfatvG~~rvtiy~c~~d~--------------------~ir~lq~y~D~d~~Esfytcs   96 (385)
T KOG1034|consen   37 HNKPIFGVAFNSFLGCDEPQVFATVGGNRVTIYECPGDG--------------------GIRLLQSYADEDHDESFYTCS   96 (385)
T ss_pred             CCCccceeeeehhcCCCCCceEEEeCCcEEEEEEECCcc--------------------ceeeeeeccCCCCCcceEEEE
Confidence            677889999984    33345555555677888664321                    111111111223666667777


Q ss_pred             eecCC----CeEEEee-CCeEEEEecCCCeeEEEECCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEecccceeeeee--
Q 001415          794 LSKND----SYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKL--  866 (1082)
Q Consensus       794 ~s~dg----~~l~~~s-dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l--  866 (1082)
                      |+-|-    .++|+++ -|.|+|.|+.++++...+.+|...|+.+.+.|+..+++++++.|.+|++|++++..++..+  
T Consensus        97 w~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG  176 (385)
T KOG1034|consen   97 WSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGG  176 (385)
T ss_pred             EEecCCCCCeeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecc
Confidence            76543    3666666 5999999999999999999999999999999988899999999999999999999999887  


Q ss_pred             -cccccCEEEEEEeCCCCEEEEEeCCCcEEEEEcCCcccccce-------------eeeccCCCCCC-------CCCCcE
Q 001415          867 -KGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNR-------------FLQIPTGRTPT-------AQSDTR  925 (1082)
Q Consensus       867 -~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~-------------~~~~~~~~~~~-------~~~v~~  925 (1082)
                       .||.+.|.++.|+++|.+|+|+|.|.+|++|++...+.....             .......|.+.       ...|.+
T Consensus       177 ~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDC  256 (385)
T KOG1034|consen  177 VEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDC  256 (385)
T ss_pred             cccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHH
Confidence             579999999999999999999999999999999954321100             00111111100       012222


Q ss_pred             EEEcCCCcEEEE-EecCeEEEEEc-cCcceeeeeccC-----------CCCcceeEEEE--cCCCceEEEeecCCcEEEE
Q 001415          926 VQFHQDQIHFLV-VHETQLAIFET-TKLECVKQWVPR-----------ESSAPITHATF--SCDSQLVYACFLDATVCVF  990 (1082)
Q Consensus       926 ~~fspdg~~l~~-~~d~~i~iwd~-~~~~~~~~~~~~-----------~h~~~i~~l~~--s~dg~~l~t~s~dg~v~vw  990 (1082)
                      +.|-  |.++++ +-++.|..|.. +-.+.+......           -....|+-+.|  .|-+++||.|...|.|.+|
T Consensus       257 vrw~--gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vw  334 (385)
T KOG1034|consen  257 VRWF--GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVW  334 (385)
T ss_pred             HHHH--hhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEE
Confidence            2222  567777 77889999987 222221111100           11345555554  5568899999999999999


Q ss_pred             ecCCceeeeeeCCCeecCCCCCCCCceeeEEEEeCCCCCeEEEEecCCcEEEEccCC
Q 001415          991 SAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLE 1047 (1082)
Q Consensus       991 d~~~~~~~~~~~~~~~~~~gh~~~~v~~~~~~~~~~d~~~l~s~~~dg~v~vW~~~~ 1047 (1082)
                      |++..+....-.    +  .|+.....+...+|+. |+.+|+...+|++|.-||.-+
T Consensus       335 dL~~~ep~~~tt----l--~~s~~~~tVRQ~sfS~-dgs~lv~vcdd~~Vwrwdrv~  384 (385)
T KOG1034|consen  335 DLDNNEPPKCTT----L--THSKSGSTVRQTSFSR-DGSILVLVCDDGTVWRWDRVS  384 (385)
T ss_pred             ECCCCCCccCce----E--Eeccccceeeeeeecc-cCcEEEEEeCCCcEEEEEeec
Confidence            999877642111    1  1111113334778887 799999999999999998643

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.84  E-value=1.3e-18  Score=168.01  Aligned_cols=260  Identities=13%  Similarity=0.233  Sum_probs=191.5

Q ss_pred             cCCCCCceEEEEecCCCeEEEEEcCCCcEEEEEccccceeeeeceeeeccCCCCcccccccccCCCCceeEEEEec--CC
Q 001415          355 LNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP--DG  432 (1082)
Q Consensus       355 ~~h~~~v~~~~~spdg~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~sp--dg  432 (1082)
                      .+|.+-|.|+.|.+-|++ +|+++.|++|.|||.......-..               ....+.|.+.|..+.|-+  -|
T Consensus        10 s~h~DlihdVs~D~~GRR-mAtCSsDq~vkI~d~~~~s~~W~~---------------Ts~Wrah~~Si~rV~WAhPEfG   73 (361)
T KOG2445|consen   10 SGHKDLIHDVSFDFYGRR-MATCSSDQTVKIWDSTSDSGTWSC---------------TSSWRAHDGSIWRVVWAHPEFG   73 (361)
T ss_pred             cCCcceeeeeeecccCce-eeeccCCCcEEEEeccCCCCceEE---------------eeeEEecCCcEEEEEecCcccc
Confidence            358999999999999997 999999999999997543322110               012568999999999977  69


Q ss_pred             CeEEEEeCCCeEEEEEccC------CceeeEEEEeeccccCeeEEEecCCCCceEEEEEeCCCcEEEEEccCCcee----
Q 001415          433 SLFGVAYSRHIVQIYSYHG------GDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQ----  502 (1082)
Q Consensus       433 ~~las~~~d~~v~iwd~~~------~~~~~~~~~~~~h~~~V~~l~fs~dg~~~~l~s~s~d~~i~vwd~~~~~~~----  502 (1082)
                      +.+|+++.|+++.||.=..      +..-....++......|+++.|.|.-..+.+|+++.||.+|||+.-..-.+    
T Consensus        74 qvvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~  153 (361)
T KOG2445|consen   74 QVVATCSYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWT  153 (361)
T ss_pred             ceEEEEecCCceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccch
Confidence            9999999999999997521      122233446777788999999999877778999999999999987543222    


Q ss_pred             --EEee-------cCCcCeEEEeeeecCC-ceEEEEecCC-----CcEEEEecCCCCc----eeeecCCCCceEEEEEcc
Q 001415          503 --YIFE-------GHEAPVYSVCPHHKEN-IQFIFSTALD-----GKIKAWLYDNLGS----RVDYEAPGRWCTTMAYSA  563 (1082)
Q Consensus       503 --~~~~-------~h~~~v~~~~~~~~~~-~~~l~s~~~d-----g~i~iwd~~~~~~----~~~~~~~~~~v~~~~~s~  563 (1082)
                        +.+.       .+..+..|+.|+++.- ..+|+.|+.+     +.++||.......    ...+..+..+|+.++|.|
T Consensus       154 Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAP  233 (361)
T KOG2445|consen  154 LQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAP  233 (361)
T ss_pred             hhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeecc
Confidence              2222       3566778888876542 2467777655     4788997765542    235667888899999988


Q ss_pred             CCCeeeecccccceeEEEecCCCCEEEEEeCCCeEEEEECCCcc-----------------eEEEEe-cCCCCCCcCeEE
Q 001415          564 DGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQ-----------------LLTSID-ADGGLPASPRIR  625 (1082)
Q Consensus       564 d~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-----------------~~~~~~-~~~~~~~i~~~~  625 (1082)
                      .-.+-+                 ..+++++.|| |+||.+....                 .+..+. ..+|...|..+.
T Consensus       234 n~Gr~y-----------------~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~  295 (361)
T KOG2445|consen  234 NIGRSY-----------------HLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVR  295 (361)
T ss_pred             ccCCce-----------------eeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEE
Confidence            754222                 2588899999 9999987311                 112222 233445899999


Q ss_pred             EcCCCCEEEEEECCCcEEEEEec
Q 001415          626 FNKDGCLLAVSTNDNGIKILATS  648 (1082)
Q Consensus       626 ~s~dg~~l~~~~~dg~i~iwd~~  648 (1082)
                      |+-.|..|++.+.||.|++|...
T Consensus       296 wNmtGtiLsStGdDG~VRLWkan  318 (361)
T KOG2445|consen  296 WNMTGTILSSTGDDGCVRLWKAN  318 (361)
T ss_pred             EeeeeeEEeecCCCceeeehhhh
Confidence            99999999999999999999754

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.83  E-value=1.4e-19  Score=183.50  Aligned_cols=255  Identities=13%  Similarity=0.175  Sum_probs=187.2

Q ss_pred             CCeEEEEEcCCCcEEEEEccccceeeeeceeeeccCCCCcc------cccccccCCCCceeEEEEecC-CCeEEEEeCCC
Q 001415          370 QQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMP------LQAALVKDPGVSVNRVIWSPD-GSLFGVAYSRH  442 (1082)
Q Consensus       370 g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~------~~~~~~~~h~~~V~~l~~spd-g~~las~~~d~  442 (1082)
                      |. ++|.|+.|..|.|||+.=...+. ..+   .+......      .......+|++.|.+++|+.. ...||+|+.|.
T Consensus       192 gN-yvAiGtmdp~IeIWDLDI~d~v~-P~~---~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~  266 (463)
T KOG0270|consen  192 GN-YVAIGTMDPEIEIWDLDIVDAVL-PCV---TLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADK  266 (463)
T ss_pred             cc-eEEEeccCceeEEeccccccccc-cce---eechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCc
Confidence            45 59999999999999986432221 001   11100000      011124589999999999984 55889999999


Q ss_pred             eEEEEEccCCceeeEEEEeeccccCeeEEEecCCCCceEEEEEeCCCcEEEEEccCCcee-EEeecCCcCeEEEeeeecC
Q 001415          443 IVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQ-YIFEGHEAPVYSVCPHHKE  521 (1082)
Q Consensus       443 ~v~iwd~~~~~~~~~~~~~~~h~~~V~~l~fs~dg~~~~l~s~s~d~~i~vwd~~~~~~~-~~~~~h~~~v~~~~~~~~~  521 (1082)
                      +|++||+.++++..   ++..|.+.|.++.|.|.... +|++|+.|++|.+.|.+..... ..++ ..+.|-.++|.+..
T Consensus       267 TV~lWD~~~g~p~~---s~~~~~k~Vq~l~wh~~~p~-~LLsGs~D~~V~l~D~R~~~~s~~~wk-~~g~VEkv~w~~~s  341 (463)
T KOG0270|consen  267 TVKLWDVDTGKPKS---SITHHGKKVQTLEWHPYEPS-VLLSGSYDGTVALKDCRDPSNSGKEWK-FDGEVEKVAWDPHS  341 (463)
T ss_pred             eEEEEEcCCCCcce---ehhhcCCceeEEEecCCCce-EEEeccccceEEeeeccCccccCceEE-eccceEEEEecCCC
Confidence            99999999999776   67789999999999998877 8999999999999999853322 2222 45778889998766


Q ss_pred             CceEEEEecCCCcEEEEecCCC-CceeeecCCCCceEEEEEccCCCeeeecccccceeEEEecCCCCEEEEEeCCCeEEE
Q 001415          522 NIQFIFSTALDGKIKAWLYDNL-GSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKF  600 (1082)
Q Consensus       522 ~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i  600 (1082)
                      . ..++++..||+|+-+|++.. ++..++..|...|.++++++.-.                    ..+++++.|+.+++
T Consensus       342 e-~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p--------------------~~l~t~s~d~~Vkl  400 (463)
T KOG0270|consen  342 E-NSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTP--------------------GLLSTASTDKVVKL  400 (463)
T ss_pred             c-eeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCC--------------------cceeeccccceEEE
Confidence            5 57888899999999999987 66778888888888888776544                    36888999999999


Q ss_pred             EECCCcceEEEEecCCCCCCcCeEEEcCCC-CEEEEEECCCcEEEEEecCCcccee
Q 001415          601 WDMDSVQLLTSIDADGGLPASPRIRFNKDG-CLLAVSTNDNGIKILATSDGIRLLR  655 (1082)
Q Consensus       601 wd~~~~~~~~~~~~~~~~~~i~~~~~s~dg-~~l~~~~~dg~i~iwd~~~~~~~~~  655 (1082)
                      |++............-......|+++.|+- -.++.|+..+.+++||+.+.....+
T Consensus       401 w~~~~~~~~~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~V~k  456 (463)
T KOG0270|consen  401 WKFDVDSPKSVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNSPVRK  456 (463)
T ss_pred             EeecCCCCcccccccccccceeecccCCCcceEEEecCccceEEEeecccChhHHH
Confidence            998754432222111122245677788854 4567788888899999987744433

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.83  E-value=1.4e-18  Score=177.79  Aligned_cols=292  Identities=12%  Similarity=0.175  Sum_probs=212.8

Q ss_pred             eeeeccCCceeEEEecccCCCCccccccccCcccccceeEEEEccCCc-eeeecccCCeEEEeeccccccCCCCCccccc
Q 001415          685 RITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGN-AILALASNAIHLLWKWQRTERNSSGKATASV  763 (1082)
Q Consensus       685 l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~-~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~  763 (1082)
                      +.+++....+++||.............+     ....+.++.|+.... .++..+.|..+++|.-..             
T Consensus         5 l~~aS~gd~~kl~D~s~~~~~~~~~~~t-----~~pg~~s~~w~~~n~lvvas~~gdk~~~~~~K~g-------------   66 (673)
T KOG4378|consen    5 LHVASTGDKTKLSDFSDLETKSEYVHQT-----AEPGDFSFNWQRRNFLVVASMAGDKVMRIKEKDG-------------   66 (673)
T ss_pred             eeeeccCCceEEeecccccCccccccCC-----CCCcceeeeccccceEEEeecCCceeEEEecccC-------------
Confidence            3445555689999998776555544433     223488888887764 334555678888885321             


Q ss_pred             CccccCCCCcceeecccCCCCCCCCccEEEeecCCCeEEEee-CCeEEEEecCCCeeEEEECCCCCCeeEEEEecCCCcE
Q 001415          764 APQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNI  842 (1082)
Q Consensus       764 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~l~~~s-dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~  842 (1082)
                             .++.+......   ....-.|++......|+++|+ .+.|+|||++...+.+.+.+|...|+++.+.- ...+
T Consensus        67 -------~~~~Vp~~~k~---~gd~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~-~Dey  135 (673)
T KOG4378|consen   67 -------KTPEVPRVRKL---TGDNAFCVACASQSLYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNN-TDEY  135 (673)
T ss_pred             -------CCCccceeecc---ccchHHHHhhhhcceeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecC-Ccce
Confidence                   11111111110   122344555555558888887 58899999998888888999999999999998 7789


Q ss_pred             EEEEeCCCcEEEEecccceeeeeeccc-ccCEEEEEEeCCCCE-EEEEeCCCcEEEEEcCCcccccceeeeccCCCCCCC
Q 001415          843 IAIGMDDSSIQIYNVRVDEVKSKLKGH-SKRITGLAFSHALNV-LVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTA  920 (1082)
Q Consensus       843 lasg~~dg~v~iwd~~~~~~~~~l~~h-~~~V~~l~~s~d~~~-l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~  920 (1082)
                      ||+++..|.|.|..+.++....+|... ...|.-+.|||..+. |.+++.+|.|.+||+.+...    .......|.   
T Consensus       136 iAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp----~~~~~~~Hs---  208 (673)
T KOG4378|consen  136 IASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSP----IFHASEAHS---  208 (673)
T ss_pred             eEEeccCCcEEEEecccCccccceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCc----ccchhhhcc---
Confidence            999999999999999998877777644 345668999998765 56789999999999998432    334444555   


Q ss_pred             CCCcEEEEcCCCcEEEE--EecCeEEEEEccCcceeeeeccCCCCcceeEEEEcCCCceEEEeecCCcEEEEecCCcee-
Q 001415          921 QSDTRVQFHQDQIHFLV--VHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKL-  997 (1082)
Q Consensus       921 ~~v~~~~fspdg~~l~~--~~d~~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~dg~~l~t~s~dg~v~vwd~~~~~~-  997 (1082)
                      .+...|+|+|....|++  +.|..|.+||....+....+..   ..+.++++|+++|.+|+.|+..|.|..||+...+. 
T Consensus       209 AP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~y---~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~P  285 (673)
T KOG4378|consen  209 APCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLTY---SHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAP  285 (673)
T ss_pred             CCcCcceecCCccceEEEecccceEEEeecccccccceeee---cCCcceeeecCCceEEEeecCCceEEEEecccCCCC
Confidence            56789999998776665  7999999999987777666653   56899999999999999999999999999986554 


Q ss_pred             eeeeCCCeecCCCCCCCCceeeEEEEeC
Q 001415          998 RCRINPSAYLPAGVSSSNVHPLVIAAHP 1025 (1082)
Q Consensus       998 ~~~~~~~~~~~~gh~~~~v~~~~~~~~~ 1025 (1082)
                      +.++.       .|...   +.+++|-|
T Consensus       286 v~v~s-------ah~~s---Vt~vafq~  303 (673)
T KOG4378|consen  286 VAVRS-------AHDAS---VTRVAFQP  303 (673)
T ss_pred             ceEee-------ecccc---eeEEEeee
Confidence            44433       33233   44778877

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.83  E-value=2.9e-19  Score=176.94  Aligned_cols=229  Identities=19%  Similarity=0.304  Sum_probs=167.2

Q ss_pred             CcceeeecCCCCCceEEEEecCCCeEEEEEcCCCcEEEEEccccceeeeeceeeeccCCCCcccccccccCCCCceeEEE
Q 001415          348 PKTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVI  427 (1082)
Q Consensus       348 ~~~~~~~~~h~~~v~~~~~spdg~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~  427 (1082)
                      .+.+...-+|+.+=++++|||-..--|++|..-+.|++|...+|.-...           ..     -+.+|+..|-.|+
T Consensus       201 ~~Pl~t~~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~vd-----------~~-----Pf~gH~~SVEDLq  264 (440)
T KOG0302|consen  201 FRPLFTFNGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPSTGSWKVD-----------QR-----PFTGHTKSVEDLQ  264 (440)
T ss_pred             cCceEEecccCccceeeecccccccccccCccccceEeeeeccCceeec-----------Cc-----cccccccchhhhc
Confidence            4445555569999999999993322388998889999999988764431           11     2667999999999


Q ss_pred             Eec-CCCeEEEEeCCCeEEEEEccCCceeeEEEEeeccccCeeEEEecCCCCceEEEEEeCCCcEEEEEccC---CceeE
Q 001415          428 WSP-DGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATN---GAKQY  503 (1082)
Q Consensus       428 ~sp-dg~~las~~~d~~v~iwd~~~~~~~~~~~~~~~h~~~V~~l~fs~dg~~~~l~s~s~d~~i~vwd~~~---~~~~~  503 (1082)
                      ||| ....||+|+.||+|+|||+..+...... ..+.|.+.|+-|.|+..-.  +||+|+.||+++|||+++   ++++.
T Consensus       265 WSptE~~vfaScS~DgsIrIWDiRs~~~~~~~-~~kAh~sDVNVISWnr~~~--lLasG~DdGt~~iwDLR~~~~~~pVA  341 (440)
T KOG0302|consen  265 WSPTEDGVFASCSCDGSIRIWDIRSGPKKAAV-STKAHNSDVNVISWNRREP--LLASGGDDGTLSIWDLRQFKSGQPVA  341 (440)
T ss_pred             cCCccCceEEeeecCceEEEEEecCCCcccee-EeeccCCceeeEEccCCcc--eeeecCCCceEEEEEhhhccCCCcce
Confidence            999 4568999999999999999988433333 3488999999999998888  899999999999999975   77889


Q ss_pred             EeecCCcCeEEEeeeecCCceEEEEecCCCcEEEEecCCCCceeeecCCCCceEEEEEccCCCeeeecc-cccceeEEEe
Q 001415          504 IFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGF-RKRSLGVVQF  582 (1082)
Q Consensus       504 ~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~-~~~~i~~~~~  582 (1082)
                      .++-|..+|+++.|+|..+ ..|++++.|..|.+||+....-.-.....  ....+.--|  ..++.-| .+..+.-+.|
T Consensus       342 ~fk~Hk~pItsieW~p~e~-s~iaasg~D~QitiWDlsvE~D~ee~~~~--a~~~L~dlP--pQLLFVHqGQke~KevhW  416 (440)
T KOG0302|consen  342 TFKYHKAPITSIEWHPHED-SVIAASGEDNQITIWDLSVEADEEEIDQE--AAEGLQDLP--PQLLFVHQGQKEVKEVHW  416 (440)
T ss_pred             eEEeccCCeeEEEeccccC-ceEEeccCCCcEEEEEeeccCChhhhccc--cccchhcCC--ceeEEEecchhHhhhhee
Confidence            9999999999999999876 58889999999999998643221100000  000000000  0222222 3446677888


Q ss_pred             cCCCC-EEEEEeCCCeEEEE
Q 001415          583 DTTKN-RFLAAGDDFSIKFW  601 (1082)
Q Consensus       583 ~~~~~-~l~~~~~dg~i~iw  601 (1082)
                      +++-. ++++.+.|| +.||
T Consensus       417 H~QiPG~lvsTa~dG-fnVf  435 (440)
T KOG0302|consen  417 HRQIPGLLVSTAIDG-FNVF  435 (440)
T ss_pred             ccCCCCeEEEecccc-eeEE
Confidence            87654 666677777 4444

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.83  E-value=3.5e-19  Score=180.54  Aligned_cols=238  Identities=17%  Similarity=0.253  Sum_probs=175.3

Q ss_pred             CCCeEEEEeCCCeEEEEEccCCceeeEEEE------------------eeccccCeeEEEecCCCCceEEEEEeCCCcEE
Q 001415          431 DGSLFGVAYSRHIVQIYSYHGGDEVRQHLE------------------IDAHVGGVNDIAFSHPNKQLCVITCGDDKTIK  492 (1082)
Q Consensus       431 dg~~las~~~d~~v~iwd~~~~~~~~~~~~------------------~~~h~~~V~~l~fs~dg~~~~l~s~s~d~~i~  492 (1082)
                      -|+|+|.|+.|..|.|||+.--..+.+...                  ..+|++.|.+++|+..-+. +|||||.|.+|+
T Consensus       191 ~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~n-VLaSgsaD~TV~  269 (463)
T KOG0270|consen  191 AGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRN-VLASGSADKTVK  269 (463)
T ss_pred             CcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccce-eEEecCCCceEE
Confidence            478999999999999999864332222222                  2379999999999988777 899999999999


Q ss_pred             EEEccCCceeEEeecCCcCeEEEeeeecCCceEEEEecCCCcEEEEecCCCCceeeecCCCCceEEEEEccCCCeeeecc
Q 001415          493 VWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGF  572 (1082)
Q Consensus       493 vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~  572 (1082)
                      +||+.+|++..++..|.+.|.++.|++... .+|++|+.|++|.+.|.+......           ..|+-+|       
T Consensus       270 lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p-~~LLsGs~D~~V~l~D~R~~~~s~-----------~~wk~~g-------  330 (463)
T KOG0270|consen  270 LWDVDTGKPKSSITHHGKKVQTLEWHPYEP-SVLLSGSYDGTVALKDCRDPSNSG-----------KEWKFDG-------  330 (463)
T ss_pred             EEEcCCCCcceehhhcCCceeEEEecCCCc-eEEEeccccceEEeeeccCccccC-----------ceEEecc-------
Confidence            999999999999999999999999998654 799999999999999998532221           1222222       


Q ss_pred             cccceeEEEecCCC-CEEEEEeCCCeEEEEECCCc-ceEEEEecCCCCCCcCeEEEcCC-CCEEEEEECCCcEEEEEecC
Q 001415          573 RKRSLGVVQFDTTK-NRFLAAGDDFSIKFWDMDSV-QLLTSIDADGGLPASPRIRFNKD-GCLLAVSTNDNGIKILATSD  649 (1082)
Q Consensus       573 ~~~~i~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~i~~~~~s~d-g~~l~~~~~dg~i~iwd~~~  649 (1082)
                         .+-.++|+|.. ..++++..||+++-+|++.. +++.+++.|..  +|.++++++. -.++++++.++.+++|++..
T Consensus       331 ---~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~--~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~  405 (463)
T KOG0270|consen  331 ---EVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDD--EISGLSVNIQTPGLLSTASTDKVVKLWKFDV  405 (463)
T ss_pred             ---ceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccC--CcceEEecCCCCcceeeccccceEEEEeecC
Confidence               23334444433 35778889999999999865 88999988876  8999999984 46788999999999999875


Q ss_pred             Cccceeecccccccccc-cccccCCCCccccCCC-CceeeeccCCceeEEEeccc
Q 001415          650 GIRLLRTFENLAYDASR-TSENSKNGDVRSLADV-KPRITEESNDKSKVWKLTEL  702 (1082)
Q Consensus       650 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~s~~~-~~l~~~~~d~~i~iw~~~~~  702 (1082)
                      ....  ....|.....+ .+.++       .|+- -.++.|+..+.+++||+...
T Consensus       406 ~~~~--~v~~~~~~~~rl~c~~~-------~~~~a~~la~GG~k~~~~vwd~~~~  451 (463)
T KOG0270|consen  406 DSPK--SVKEHSFKLGRLHCFAL-------DPDVAFTLAFGGEKAVLRVWDIFTN  451 (463)
T ss_pred             CCCc--ccccccccccceeeccc-------CCCcceEEEecCccceEEEeecccC
Confidence            4221  11111111111 02222       3333 35677888888999998753

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.82  E-value=3.8e-19  Score=181.79  Aligned_cols=287  Identities=11%  Similarity=0.105  Sum_probs=215.1

Q ss_pred             cccccccccccCccccCCCccCCCCCCCCcceeeecCCCCCceEEEEecCCCeEEEEEcCCCcEEEEEccccceeeeece
Q 001415          320 PVNVLPVSFTGHSHSHSHSQAFSTPEDLPKTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNF  399 (1082)
Q Consensus       320 ~~~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~llasgs~dg~i~iwd~~~~~~~~~~~~  399 (1082)
                      ++++||++-...+               +.-+.++-.|.  +..+.|+......+|+.+.|..|++|.-...  +.+  +
T Consensus        13 ~~kl~D~s~~~~~---------------~~~~~~t~~pg--~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~--~~~--V   71 (673)
T KOG4378|consen   13 KTKLSDFSDLETK---------------SEYVHQTAEPG--DFSFNWQRRNFLVVASMAGDKVMRIKEKDGK--TPE--V   71 (673)
T ss_pred             ceEEeecccccCc---------------cccccCCCCCc--ceeeeccccceEEEeecCCceeEEEecccCC--CCc--c
Confidence            4778877644432               22222333344  8899998887534455566788899964322  110  1


Q ss_pred             eeeccCCCCcccccccccCCCCceeEEEEecCCCeEEEEeCCCeEEEEEccCCceeeEEEEeeccccCeeEEEecCCCCc
Q 001415          400 KVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQ  479 (1082)
Q Consensus       400 ~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d~~v~iwd~~~~~~~~~~~~~~~h~~~V~~l~fs~dg~~  479 (1082)
                                |...+ +.+  +.-.|++......|+++|+..+.|+|||++...+.+   .+.+|...|+++.+...+. 
T Consensus        72 ----------p~~~k-~~g--d~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~hr---~lkdh~stvt~v~YN~~De-  134 (673)
T KOG4378|consen   72 ----------PRVRK-LTG--DNAFCVACASQSLYEISGGQSGCVKIWDLRAKLIHR---FLKDHQSTVTYVDYNNTDE-  134 (673)
T ss_pred             ----------ceeec-ccc--chHHHHhhhhcceeeeccCcCceeeehhhHHHHHhh---hccCCcceeEEEEecCCcc-
Confidence                      11110 112  233444444455899999999999999999665554   6889999999999998888 


Q ss_pred             eEEEEEeCCCcEEEEEccCCceeEEeecCCcC-eEEEeeeecCCceEEEEecCCCcEEEEecCCCCceee-ecCCCCceE
Q 001415          480 LCVITCGDDKTIKVWDATNGAKQYIFEGHEAP-VYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVD-YEAPGRWCT  557 (1082)
Q Consensus       480 ~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~-v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~-~~~~~~~v~  557 (1082)
                       +||+++..|.|.|..+.++.....|....+. |.-+.+++... .+|.+++.+|.|.+||+....+... ...|..+..
T Consensus       135 -yiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr-~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~  212 (673)
T KOG4378|consen  135 -YIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKR-FLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCR  212 (673)
T ss_pred             -eeEEeccCCcEEEEecccCccccceecCCCCeEEEeecccccc-eeeEeeccCCeEEEEeccCCCcccchhhhccCCcC
Confidence             8999999999999999999888888754344 55778877654 6888999999999999988776653 345677778


Q ss_pred             EEEEccCCCeeeecccccceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEEecCCCCCCcCeEEEcCCCCEEEEEE
Q 001415          558 TMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVST  637 (1082)
Q Consensus       558 ~~~~s~d~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~  637 (1082)
                      .++|+|...                    ..|++.|.|..|.+||....+....+....   +...++|+++|.+|+.|.
T Consensus       213 gicfspsne--------------------~l~vsVG~Dkki~~yD~~s~~s~~~l~y~~---Plstvaf~~~G~~L~aG~  269 (673)
T KOG4378|consen  213 GICFSPSNE--------------------ALLVSVGYDKKINIYDIRSQASTDRLTYSH---PLSTVAFSECGTYLCAGN  269 (673)
T ss_pred             cceecCCcc--------------------ceEEEecccceEEEeecccccccceeeecC---CcceeeecCCceEEEeec
Confidence            888887765                    258889999999999999887777765433   588999999999999999


Q ss_pred             CCCcEEEEEecCCccceeeccccccccccccccc
Q 001415          638 NDNGIKILATSDGIRLLRTFENLAYDASRTSENS  671 (1082)
Q Consensus       638 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  671 (1082)
                      ..|.|..||++..+.++..+..|...+.  +++|
T Consensus       270 s~G~~i~YD~R~~k~Pv~v~sah~~sVt--~vaf  301 (673)
T KOG4378|consen  270 SKGELIAYDMRSTKAPVAVRSAHDASVT--RVAF  301 (673)
T ss_pred             CCceEEEEecccCCCCceEeeeccccee--EEEe
Confidence            9999999999999889999988888766  5666

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.82  E-value=2.8e-18  Score=172.08  Aligned_cols=339  Identities=16%  Similarity=0.211  Sum_probs=206.2

Q ss_pred             CCceeEEEEecCCC-eEEEEeCCCeEEEEEccCCc------eeeEEEEeeccccCeeEEEecCCCCceEEEEEeCCCcEE
Q 001415          420 GVSVNRVIWSPDGS-LFGVAYSRHIVQIYSYHGGD------EVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIK  492 (1082)
Q Consensus       420 ~~~V~~l~~spdg~-~las~~~d~~v~iwd~~~~~------~~~~~~~~~~h~~~V~~l~fs~dg~~~~l~s~s~d~~i~  492 (1082)
                      ..+|..+.|.+++. .||+|+.|..|+||-+..+.      .+.....+..|...|+++.|+|+|.  +|+||+++|.|.
T Consensus        13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~ge--lLASg~D~g~v~   90 (434)
T KOG1009|consen   13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGE--LLASGGDGGEVF   90 (434)
T ss_pred             CCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcC--eeeecCCCceEE
Confidence            34899999999777 99999999999999886432      3445567889999999999999999  899999999999


Q ss_pred             EEEccCCceeEEeecCCcCeEEEeeeecCCceEEEEecCCCcEEEEecCCCCceeeecCCCCceEEEEEccCCCeeeecc
Q 001415          493 VWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGF  572 (1082)
Q Consensus       493 vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~  572 (1082)
                      +|-...-. +     +... +....  ... .+          .+|        .....|...+.               
T Consensus        91 lWk~~~~~-~-----~~~d-~e~~~--~ke-~w----------~v~--------k~lr~h~~diy---------------  127 (434)
T KOG1009|consen   91 LWKQGDVR-I-----FDAD-TEADL--NKE-KW----------VVK--------KVLRGHRDDIY---------------  127 (434)
T ss_pred             EEEecCcC-C-----cccc-chhhh--Ccc-ce----------EEE--------EEecccccchh---------------
Confidence            99754300 0     0000 00000  000 01          111        11122333444               


Q ss_pred             cccceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEecCCcc
Q 001415          573 RKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIR  652 (1082)
Q Consensus       573 ~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~iwd~~~~~~  652 (1082)
                            .++|+|++.++++++.|+.+++||+..|+....+..|.+  .+..++|.|-++++++-+.|...+.+.+... +
T Consensus       128 ------dL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~--yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~-~  198 (434)
T KOG1009|consen  128 ------DLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEH--YVQGVAWDPLNQYVASKSSDRHPEGFSAKLK-Q  198 (434)
T ss_pred             ------hhhccCCCceeeeeeccceEEEEEeccceeEeecccccc--ccceeecchhhhhhhhhccCcccceeeeeee-e
Confidence                  444555555899999999999999999999999988877  6899999999999999999987777765433 1


Q ss_pred             ceeecccccccccccccccCCCCccccCCCCceeeeccCCceeEEEecccCCCCccccccccCcccccceeEEEEccCCc
Q 001415          653 LLRTFENLAYDASRTSENSKNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGN  732 (1082)
Q Consensus       653 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~  732 (1082)
                      .....   ...+.. ...+       .        .......+++.-++                -..-...++|+|+|.
T Consensus       199 ~~~~~---~~~~m~-~~~~-------~--------~~e~~s~rLfhDeT----------------lksFFrRlsfTPdG~  243 (434)
T KOG1009|consen  199 VIKRH---GLDIMP-AKAF-------N--------EREGKSTRLFHDET----------------LKSFFRRLSFTPDGS  243 (434)
T ss_pred             eeeee---eeeEee-eccc-------C--------CCCcceeeeeecCc----------------hhhhhhhcccCCCCc
Confidence            11111   100000 0000       0        00001111221111                111233455566665


Q ss_pred             eeeecccCCeEEEeeccccccCCCCCcccccCccccCCCCcceeecccCCCCCCCCccEEEeecCCCeEEEeeCCeEEEE
Q 001415          733 AILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGKISLF  812 (1082)
Q Consensus       733 ~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~l~~~sdg~i~iw  812 (1082)
                      .+++.+.-  +.+                                       +......                ..+++
T Consensus       244 llvtPag~--~~~---------------------------------------g~~~~~n----------------~tYvf  266 (434)
T KOG1009|consen  244 LLVTPAGL--FKV---------------------------------------GGGVFRN----------------TSYVF  266 (434)
T ss_pred             EEEcccce--eee---------------------------------------CCceeec----------------eeEee
Confidence            44443221  100                                       0000000                11222


Q ss_pred             ecC-CCeeEEEECCCCCCeeEEEEecC-----------------CCcEEEEEeCCCcEEEEecccceeeeeec-ccccCE
Q 001415          813 NMM-TFKTMATFMPPPPAATFLAFHPQ-----------------DNNIIAIGMDDSSIQIYNVRVDEVKSKLK-GHSKRI  873 (1082)
Q Consensus       813 d~~-~~~~~~~~~~~~~~v~~l~~sp~-----------------~~~~lasg~~dg~v~iwd~~~~~~~~~l~-~h~~~V  873 (1082)
                      +-. ..++...+......+..+.|+|-                 -+..+|+++.+ .|+|||.++-.++.... -|-.+|
T Consensus       267 srk~l~rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt~~-svyvydtq~~~P~~~v~nihy~~i  345 (434)
T KOG1009|consen  267 SRKDLKRPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIATKN-SVYVYDTQTLEPLAVVDNIHYSAI  345 (434)
T ss_pred             ccccccCceeecCCCCcceEEEEeeeeEEEeccccccccccccccceEEEEeecc-eEEEeccccccceEEEeeeeeeee
Confidence            221 11233333333333344443331                 34456667655 89999998877766554 588999


Q ss_pred             EEEEEeCCCCEEEEEeCCCcEEEEEcCCcccc
Q 001415          874 TGLAFSHALNVLVSSGADSQLCVWSSDGWEKQ  905 (1082)
Q Consensus       874 ~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~  905 (1082)
                      +.++|++||..|+..|.||..-+-.++.++..
T Consensus       346 TDiaws~dg~~l~vSS~DGyCS~vtfe~~elg  377 (434)
T KOG1009|consen  346 TDIAWSDDGSVLLVSSTDGFCSLVTFEPWELG  377 (434)
T ss_pred             cceeecCCCcEEEEeccCCceEEEEEcchhcc
Confidence            99999999999999999999988888886643

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.82  E-value=1.8e-18  Score=175.88  Aligned_cols=312  Identities=12%  Similarity=0.127  Sum_probs=226.5

Q ss_pred             CCceeEEeecCCcCeEEEeeeecCCceEEEEecCCCcEEEEecCCCC----ceeeecCCCCceEEEEEccCCCeeeeccc
Q 001415          498 NGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLG----SRVDYEAPGRWCTTMAYSADGTRTYQGFR  573 (1082)
Q Consensus       498 ~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~----~~~~~~~~~~~v~~~~~s~d~~~~~~~~~  573 (1082)
                      +-......+-+.++|++++|+|..+..++++|..-|.|-+||+.+.+    ....+..|..+|.++.|+|...       
T Consensus       175 ~~~~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~-------  247 (498)
T KOG4328|consen  175 DYRILNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANT-------  247 (498)
T ss_pred             cceecceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCCh-------
Confidence            33344455668899999999999988899999999999999996332    3446677777788887777654       


Q ss_pred             ccceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEecCCccc
Q 001415          574 KRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRL  653 (1082)
Q Consensus       574 ~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~iwd~~~~~~~  653 (1082)
                                   ..+++.+.||+|++-|++.+..-..+........+.++.|+.+...++.+..-|.+.+||.+++...
T Consensus       248 -------------s~i~ssSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~  314 (498)
T KOG4328|consen  248 -------------SQIYSSSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSE  314 (498)
T ss_pred             -------------hheeeeccCceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCcc
Confidence                         3689999999999999987765444443333345778889998888888888889999999988776


Q ss_pred             eeecccccccccccccccCCCCccccCCCCceeeeccCCceeEEEecccCCCCccccccccCcccccceeEEEEccCCce
Q 001415          654 LRTFENLAYDASRTSENSKNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNA  733 (1082)
Q Consensus       654 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~  733 (1082)
                      ...+.-|...+.  .++++      .....++++++.|++.+|||+......... .+....  |...|.+..|||.+..
T Consensus       315 ~~~~~lh~kKI~--sv~~N------P~~p~~laT~s~D~T~kIWD~R~l~~K~sp-~lst~~--HrrsV~sAyFSPs~gt  383 (498)
T KOG4328|consen  315 YENLRLHKKKIT--SVALN------PVCPWFLATASLDQTAKIWDLRQLRGKASP-FLSTLP--HRRSVNSAYFSPSGGT  383 (498)
T ss_pred             chhhhhhhcccc--eeecC------CCCchheeecccCcceeeeehhhhcCCCCc-ceeccc--ccceeeeeEEcCCCCc
Confidence            777776766554  55552      224567899999999999999876554431 222222  8899999999999988


Q ss_pred             eeecccCCeEEEeeccccccCCCCCcccccCccccCCCCcceeecccCCCCCCCC--ccEEEeecCCCeEEEee-CCeEE
Q 001415          734 ILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEA--VPCFALSKNDSYVMSAS-GGKIS  810 (1082)
Q Consensus       734 l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--i~~l~~s~dg~~l~~~s-dg~i~  810 (1082)
                      |++.+.|..|+|||..-              +.-|+...+.......    +..+  ....+|.|+..++++|. -..|-
T Consensus       384 l~TT~~D~~IRv~dss~--------------~sa~~~p~~~I~Hn~~----t~RwlT~fKA~W~P~~~li~vg~~~r~ID  445 (498)
T KOG4328|consen  384 LLTTCQDNEIRVFDSSC--------------ISAKDEPLGTIPHNNR----TGRWLTPFKAAWDPDYNLIVVGRYPRPID  445 (498)
T ss_pred             eEeeccCCceEEeeccc--------------ccccCCccceeeccCc----ccccccchhheeCCCccEEEEeccCccee
Confidence            99999999999998631              1112333322221111    1122  34568999999999997 47799


Q ss_pred             EEecCCCeeEEEECCCCC-CeeE-EEEecCCCcEEEEEeCCCcEEEEecc
Q 001415          811 LFNMMTFKTMATFMPPPP-AATF-LAFHPQDNNIIAIGMDDSSIQIYNVR  858 (1082)
Q Consensus       811 iwd~~~~~~~~~~~~~~~-~v~~-l~~sp~~~~~lasg~~dg~v~iwd~~  858 (1082)
                      |+|-..++.+..+..... .|.+ ..|+|-+..++|-|+..|.|+||--+
T Consensus       446 v~~~~~~q~v~el~~P~~~tI~~vn~~HP~~~~~~aG~~s~Gki~vft~k  495 (498)
T KOG4328|consen  446 VFDGNGGQMVCELHDPESSTIPSVNEFHPMRDTLAAGGNSSGKIYVFTNK  495 (498)
T ss_pred             EEcCCCCEEeeeccCccccccccceeecccccceeccCCccceEEEEecC
Confidence            999999988888665543 4554 58999433366666778899988643

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.82  E-value=3.9e-16  Score=181.23  Aligned_cols=369  Identities=22%  Similarity=0.389  Sum_probs=268.5

Q ss_pred             EeeccccCeeEEEecCCCCceEEEEEeCCCcEEEEEccCCc-eeEEeecCCc-CeEEEeeeecCCce-EEEEecC-CCcE
Q 001415          460 EIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGA-KQYIFEGHEA-PVYSVCPHHKENIQ-FIFSTAL-DGKI  535 (1082)
Q Consensus       460 ~~~~h~~~V~~l~fs~dg~~~~l~s~s~d~~i~vwd~~~~~-~~~~~~~h~~-~v~~~~~~~~~~~~-~l~s~~~-dg~i  535 (1082)
                      .+..|...+..+.|.+.+.  .++.++.|+.+.+|+...+. .+..+.++.. .+..+.+. ..++. .++..+. |+.+
T Consensus        60 ~~~~~~~~i~~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~d~~~  136 (466)
T COG2319          60 LLRGHEDSITSIAFSPDGE--LLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALS-SPDGNSILLASSSLDGTV  136 (466)
T ss_pred             eeeeccceEEEEEECCCCc--EEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEE-CCCcceEEeccCCCCccE
Confidence            3567899999999999999  78888899999999998887 7777776443 77777774 45545 5555444 9999


Q ss_pred             EEEecCC-CCceeeecCCCCceEEEEEccCCCeeeecccccceeEEEecCCCCEEEEEeC-CCeEEEEECCCcceEEEEe
Q 001415          536 KAWLYDN-LGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGD-DFSIKFWDMDSVQLLTSID  613 (1082)
Q Consensus       536 ~iwd~~~-~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~  613 (1082)
                      .+|+... ......+..+...+..+.|++++.                     .+++++. |+.+++|+...+..+..+.
T Consensus       137 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (466)
T COG2319         137 KLWDLSTPGKLIRTLEGHSESVTSLAFSPDGK---------------------LLASGSSLDGTIKLWDLRTGKPLSTLA  195 (466)
T ss_pred             EEEEecCCCeEEEEEecCcccEEEEEECCCCC---------------------EEEecCCCCCceEEEEcCCCceEEeec
Confidence            9999987 556666666777676666666664                     6777775 9999999999988888887


Q ss_pred             cCCCCCCcCeEEEcCCCC-EEEEEECCCcEEEEEecCCcccee-ecccccccccccccccCCCCccccCCCCceeeeccC
Q 001415          614 ADGGLPASPRIRFNKDGC-LLAVSTNDNGIKILATSDGIRLLR-TFENLAYDASRTSENSKNGDVRSLADVKPRITEESN  691 (1082)
Q Consensus       614 ~~~~~~~i~~~~~s~dg~-~l~~~~~dg~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d  691 (1082)
                      .+..  .+.+++|+|++. .+++++.|+.+++||...+. ... .+.+                                
T Consensus       196 ~~~~--~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~-~~~~~~~~--------------------------------  240 (466)
T COG2319         196 GHTD--PVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGK-LLRSTLSG--------------------------------  240 (466)
T ss_pred             cCCC--ceEEEEEcCCcceEEEEecCCCcEEEEECCCCc-EEeeecCC--------------------------------
Confidence            6444  799999999998 55555889999999654321 100 0000                                


Q ss_pred             CceeEEEecccCCCCccccccccCcccccceeEEEEccCCceeeecccCCeEEEeeccccccCCCCCcccccCccccCCC
Q 001415          692 DKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPP  771 (1082)
Q Consensus       692 ~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~  771 (1082)
                                                                                                      
T Consensus       241 --------------------------------------------------------------------------------  240 (466)
T COG2319         241 --------------------------------------------------------------------------------  240 (466)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CcceeecccCCCCCCCCccEEEeecCCCeEEEee-CCeEEEEecCCCee-EEEECCCCCCeeEEEEecCCCcEEEEEeCC
Q 001415          772 SGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKT-MATFMPPPPAATFLAFHPQDNNIIAIGMDD  849 (1082)
Q Consensus       772 ~~~~~~~~~~~~~~~~~i~~l~~s~dg~~l~~~s-dg~i~iwd~~~~~~-~~~~~~~~~~v~~l~~sp~~~~~lasg~~d  849 (1082)
                                   |.... ...|++++.++++++ ++.+++|+...... ...+..|...+.++.|+| ++..+++++.|
T Consensus       241 -------------~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~d  305 (466)
T COG2319         241 -------------HSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSP-DGKLLASGSSD  305 (466)
T ss_pred             -------------CCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEEecCCccEEEEEECC-CCCEEEEeeCC
Confidence                         11221 114556665555444 56777777765443 344456778899999999 77777779999


Q ss_pred             CcEEEEecccceeeeeec--ccccCEEEEEEeCCCCEEEEE-eCCCcEEEEEcCCcccccceeeeccCCCCCCCCCCcEE
Q 001415          850 SSIQIYNVRVDEVKSKLK--GHSKRITGLAFSHALNVLVSS-GADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRV  926 (1082)
Q Consensus       850 g~v~iwd~~~~~~~~~l~--~h~~~V~~l~~s~d~~~l~s~-s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~  926 (1082)
                      +.+.+|+..+........  .|...+..+.|.+++..++.+ ..|+.+.+|++....     ........    ..+..+
T Consensus       306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~-----~~~~~~~~----~~~~~~  376 (466)
T COG2319         306 GTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGK-----PLKTLEGH----SNVLSV  376 (466)
T ss_pred             CcEEEEEcCCCceEEEeeecccCCceEEEEECCCCCEEEEeecCCCcEEeeecCCCc-----eeEEecCC----ceEEEE
Confidence            999999998887766665  888889999994333556555 688999999998854     11111111    115788


Q ss_pred             EEcCCCcEEEE--EecCeEEEEEccCcceeeeeccCCCCcceeEEEEcCCCceEEEeecCCcEEEEecCC
Q 001415          927 QFHQDQIHFLV--VHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAAN  994 (1082)
Q Consensus       927 ~fspdg~~l~~--~~d~~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~dg~~l~t~s~dg~v~vwd~~~  994 (1082)
                      .+++ ......  ..++.+.+|+.............  ...+....+++++..+++++.++.+++|+..+
T Consensus       377 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  443 (466)
T COG2319         377 SFSP-DGRVVSSGSTDGTVRLWDLSTGSLLRNLDGH--TSRVTSLDFSPDGKSLASGSSDNTIRLWDLKT  443 (466)
T ss_pred             EECC-CCCEEEEecCCCceEEEecccCeeeeeccCC--CCcEEEEEECCCCcEEEEecCCCcEEEEeccC
Confidence            8888 533333  46789999999988887766531  17899999999999999999999999999988

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.81  E-value=4.9e-18  Score=165.42  Aligned_cols=306  Identities=15%  Similarity=0.224  Sum_probs=210.2

Q ss_pred             cccCCCCceeEEEEec-----CCCeEEEEeCCCeEEEEEccCCceeeEEEEe--eccccCeeEEEecCCCC--ceEEEEE
Q 001415          415 LVKDPGVSVNRVIWSP-----DGSLFGVAYSRHIVQIYSYHGGDEVRQHLEI--DAHVGGVNDIAFSHPNK--QLCVITC  485 (1082)
Q Consensus       415 ~~~~h~~~V~~l~~sp-----dg~~las~~~d~~v~iwd~~~~~~~~~~~~~--~~h~~~V~~l~fs~dg~--~~~l~s~  485 (1082)
                      +..+|+.+|..++|.+     .-..+|+++. ..+.+|.......++.+...  ..|......++|+-|..  ..++|.|
T Consensus        33 l~ed~~~~I~gv~fN~~~~~~e~~vfatvG~-~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~~  111 (385)
T KOG1034|consen   33 LKEDHNKPIFGVAFNSFLGCDEPQVFATVGG-NRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAAG  111 (385)
T ss_pred             hhccCCCccceeeeehhcCCCCCceEEEeCC-cEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEee
Confidence            5678999999999986     3345565554 56889988765433322222  24777888999976543  2488999


Q ss_pred             eCCCcEEEEEccCCceeEEeecCCcCeEEEeeeecCCceEEEEecCCCcEEEEecCCCCceeeec---CCCCceEEEEEc
Q 001415          486 GDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYE---APGRWCTTMAYS  562 (1082)
Q Consensus       486 s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~---~~~~~v~~~~~s  562 (1082)
                      |.-|.|+|.|+.++++...+.+|...|+.+.++|... +++++++.|..||+|++++..++..+.   +|...|.++.  
T Consensus       112 G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~-qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD--  188 (385)
T KOG1034|consen  112 GYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRP-QLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVD--  188 (385)
T ss_pred             cceeEEEEEecchhhhccceeccCccchhhhcCCCCC-cEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEE--
Confidence            9999999999999999999999999999999998755 799999999999999999887776543   3444455554  


Q ss_pred             cCCCeeeecccccceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEEe------cC--------------------C
Q 001415          563 ADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSID------AD--------------------G  616 (1082)
Q Consensus       563 ~d~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~------~~--------------------~  616 (1082)
                                         |++++.+++++|.|.+|++|++...+....++      ..                    .
T Consensus       189 -------------------~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~di  249 (385)
T KOG1034|consen  189 -------------------FSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDI  249 (385)
T ss_pred             -------------------EcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCcccccccccccccc
Confidence                               45555589999999999999998543221111      00                    1


Q ss_pred             CCCCcCeEEEcCCCCEEEEEECCCcEEEEEecCCccceeeccccccccc-ccccccCC-----CCccccCCCCceeeecc
Q 001415          617 GLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDAS-RTSENSKN-----GDVRSLADVKPRITEES  690 (1082)
Q Consensus       617 ~~~~i~~~~~s~dg~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~-~~~~~~~~-----~~~~~s~~~~~l~~~~~  690 (1082)
                      |...|-|+.|-  |+++++-+-++.|..|....-.+.+........... -....+..     ....+.+-++.|+.|..
T Consensus       250 HrnyVDCvrw~--gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq  327 (385)
T KOG1034|consen  250 HRNYVDCVRWF--GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQ  327 (385)
T ss_pred             ccchHHHHHHH--hhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccC
Confidence            11123333333  578888888999999987321122111111110000 00001100     11223566788999999


Q ss_pred             CCceeEEEecccCCCCccccccccCcccccceeEEEEccCCceeeecccCCeEEEeec
Q 001415          691 NDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKW  748 (1082)
Q Consensus       691 d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iw~~  748 (1082)
                      .|.+.+||+...... .+..+.-.  .....|+..+|+.||..|+..+.|+.|.-||.
T Consensus       328 ~g~v~vwdL~~~ep~-~~ttl~~s--~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdr  382 (385)
T KOG1034|consen  328 SGKVYVWDLDNNEPP-KCTTLTHS--KSGSTVRQTSFSRDGSILVLVCDDGTVWRWDR  382 (385)
T ss_pred             CCcEEEEECCCCCCc-cCceEEec--cccceeeeeeecccCcEEEEEeCCCcEEEEEe
Confidence            999999999976554 33333222  25678999999999999999999999999875

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.81  E-value=2.9e-17  Score=169.74  Aligned_cols=506  Identities=14%  Similarity=0.133  Sum_probs=284.7

Q ss_pred             CCCCCceEEEEecCCCeEEEEEcCCCcEEEEEccccceeeeeceeeeccCCCCcccccccccCCCCceeEEEEecCCCeE
Q 001415          356 NQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLF  435 (1082)
Q Consensus       356 ~h~~~v~~~~~spdg~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l  435 (1082)
                      .|...|.|+.|+.... ++.++ .|..+.+|.-.+.......     .+.....|     ..-|-.+-. ..=-.....+
T Consensus        12 r~~e~vc~v~w~~~ee-i~~~~-dDh~~~~~~~~~~~s~~~~-----~~p~df~p-----t~~h~~~rs-~~~g~~~d~~   78 (737)
T KOG1524|consen   12 RNSEKVCCVDWSSNEE-IYFVS-DDHQIFKWSDVSRDSVEVA-----KLPDDFVP-----TDMHLGGRS-SGGGKGSDTL   78 (737)
T ss_pred             ccceeEEeecccccce-EEEec-cCceEEEeecccchhhhhh-----hCCcccCC-----ccccccccc-cCCCCCcceE
Confidence            5777788999999988 35554 4556555544333222110     00000000     001100000 0000123578


Q ss_pred             EEEeCCCeEEEEEccCCceeeEEEEeeccccCeeEEEecCCCCceEEEEEeCCCcEEEEEccCCceeEEeecCCcCeEEE
Q 001415          436 GVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSV  515 (1082)
Q Consensus       436 as~~~d~~v~iwd~~~~~~~~~~~~~~~h~~~V~~l~fs~dg~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~  515 (1082)
                      +.++.||.+.|-+-.. +..+   ....|.+.|.+-.|+|||.  -|++++.||.|++|. ++|....++.....+|.|+
T Consensus        79 ~i~s~DGkf~il~k~~-rVE~---sv~AH~~A~~~gRW~~dGt--gLlt~GEDG~iKiWS-rsGMLRStl~Q~~~~v~c~  151 (737)
T KOG1524|consen   79 LICSNDGRFVILNKSA-RVER---SISAHAAAISSGRWSPDGA--GLLTAGEDGVIKIWS-RSGMLRSTVVQNEESIRCA  151 (737)
T ss_pred             EEEcCCceEEEecccc-hhhh---hhhhhhhhhhhcccCCCCc--eeeeecCCceEEEEe-ccchHHHHHhhcCceeEEE
Confidence            8888999988877443 2222   5779999999999999999  799999999999999 7887777777678899999


Q ss_pred             eeeecCCceEEEEecCCCcEEEEecCCCCceeeecCCCCceEEEEEccCCCeeeecccccceeEEEecCCCCEEEEEeCC
Q 001415          516 CPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDD  595 (1082)
Q Consensus       516 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d  595 (1082)
                      +|.|+.+ +.+++.+  +.+.+=.+...........|.+-|.++.                     |++..+.+++||+|
T Consensus       152 ~W~p~S~-~vl~c~g--~h~~IKpL~~n~k~i~WkAHDGiiL~~~---------------------W~~~s~lI~sgGED  207 (737)
T KOG1524|consen  152 RWAPNSN-SIVFCQG--GHISIKPLAANSKIIRWRAHDGLVLSLS---------------------WSTQSNIIASGGED  207 (737)
T ss_pred             EECCCCC-ceEEecC--CeEEEeecccccceeEEeccCcEEEEee---------------------cCccccceeecCCc
Confidence            9988775 4555443  3455555555555556666665555555                     45555589999999


Q ss_pred             CeEEEEECCCcceEEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEecCCccceeecccccccccccccccCCCC
Q 001415          596 FSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKNGD  675 (1082)
Q Consensus       596 g~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  675 (1082)
                      -..++||.. |..+..-..|..  +|++++|+|+ +.++.++. +++++=.                             
T Consensus       208 ~kfKvWD~~-G~~Lf~S~~~ey--~ITSva~npd-~~~~v~S~-nt~R~~~-----------------------------  253 (737)
T KOG1524|consen  208 FRFKIWDAQ-GANLFTSAAEEY--AITSVAFNPE-KDYLLWSY-NTARFSS-----------------------------  253 (737)
T ss_pred             eeEEeeccc-CcccccCChhcc--ceeeeeeccc-cceeeeee-eeeeecC-----------------------------
Confidence            999999964 555555555554  8999999999 55555543 2222100                             


Q ss_pred             ccccCCCCceeeeccCCceeEEEecccCCCCccccccccCcccccceeEEEEccCCceeeecccCCeEEEeeccccccCC
Q 001415          676 VRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNS  755 (1082)
Q Consensus       676 ~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~  755 (1082)
                                                               ...+.|..++||+||.++++++..|.+.+=..-.     
T Consensus       254 -----------------------------------------p~~GSifnlsWS~DGTQ~a~gt~~G~v~~A~~ie-----  287 (737)
T KOG1524|consen  254 -----------------------------------------PRVGSIFNLSWSADGTQATCGTSTGQLIVAYAIE-----  287 (737)
T ss_pred             -----------------------------------------CCccceEEEEEcCCCceeeccccCceEEEeeeeh-----
Confidence                                                     0356788899999999999999988776421100     


Q ss_pred             CCCcccccCccccCCCCcceeecccCCCCCCCCccEEEeecCCCeEEEe-eCCeEEEEecCCCeeEEEECCCCCCeeEEE
Q 001415          756 SGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSA-SGGKISLFNMMTFKTMATFMPPPPAATFLA  834 (1082)
Q Consensus       756 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~l~~~-sdg~i~iwd~~~~~~~~~~~~~~~~v~~l~  834 (1082)
                                                    ...+       -+.+=++. ....|.+-|+.++.+ ..+. ....+...+
T Consensus       288 ------------------------------q~l~-------~~n~~~t~~~r~~I~vrdV~~~v~-d~LE-~p~rv~k~s  328 (737)
T KOG1524|consen  288 ------------------------------QQLV-------SGNLKATSKSRKSITVRDVATGVQ-DILE-FPQRVVKFS  328 (737)
T ss_pred             ------------------------------hhhh-------hccceeEeeccceEEeehhhhhHH-HHhh-Cccceeeee
Confidence                                          0000       00111112 134466666655433 2222 344555555


Q ss_pred             EecCCCcEEEEEeCCCcEEEEecccceeeeeecccccCEEEEEEeCCCCEEEEEeCCCcEEEEEcCCcccccceeeeccC
Q 001415          835 FHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPT  914 (1082)
Q Consensus       835 ~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~  914 (1082)
                      +.-  + +|+++. ...|++|.-........+.+....+.-+.-   ++...-.....+|.+|..+......    ..+.
T Consensus       329 L~Y--~-hLvvaT-s~qvyiys~knwntpiiidgre~tr~lieq---~ek~fli~dgsSi~lytyegR~~~n----p~~P  397 (737)
T KOG1524|consen  329 LGY--G-HLVVAT-SLQVYIYSEKNWNTPIIIDGREDTRNLIEQ---GEKYFLILDGSSIWLYTYEGRLHLN----PRYP  397 (737)
T ss_pred             ece--e-EEEEEe-ccEEEEEecCCccCcEEEeccccchhHhhh---hhhheEEecCcEEEEEEecCceecC----CCCC
Confidence            543  3 333333 246888776554433344443333221211   1111112223346666555422111    1111


Q ss_pred             CCCCCCCCCcEEEEcCCCcEEEE---EecCeEEEEEc-cCcceeeeeccCCCCcceeEEEEc----CCCceEEEeecCCc
Q 001415          915 GRTPTAQSDTRVQFHQDQIHFLV---VHETQLAIFET-TKLECVKQWVPRESSAPITHATFS----CDSQLVYACFLDAT  986 (1082)
Q Consensus       915 ~~~~~~~~v~~~~fspdg~~l~~---~~d~~i~iwd~-~~~~~~~~~~~~~h~~~i~~l~~s----~dg~~l~t~s~dg~  986 (1082)
                      |...  .....-..|-....|+.   +....+.+||. .+|+....-..-.|...|..++..    ++.+.++.-...+.
T Consensus       398 g~~~--dlL~~rtlsLandtLaird~ad~kvlhlFd~istgk~qgDgk~L~hk~~IveIAldqkG~tnDrkVAFiDknrd  475 (737)
T KOG1524|consen  398 GSQI--DLLTWRTLSLANDTLAIRDNADPKVLHLFDLISTGKRQGDGKSLRHKQQIVEIALDQKGLTNDRKVAFIDKNRD  475 (737)
T ss_pred             Cccc--ccccceeeecccceEEeecCCCCeeEEeccCCCCCcccCCccccchhhhHHHhHhhccCCCccceEEEEecCCc
Confidence            1110  11111122333334555   23356788888 666654332222355566666654    35567777777777


Q ss_pred             EEEEecCCceeeeeeCCCeecCCCCCCCCceeeEEEEeCCCCCeEEEEecCCcEEEEccCCCC
Q 001415          987 VCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESE 1049 (1082)
Q Consensus       987 v~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~~~~~~~d~~~l~s~~~dg~v~vW~~~~~~ 1049 (1082)
                      +.|=.+.......++-     .-|     .....++|+.  -.-+++|-.|+++.||-.+...
T Consensus       476 l~ItsvKrfgkee~I~-----KiG-----TmVhtLawnd--ttNiLcglqDt~fsVWy~pn~v  526 (737)
T KOG1524|consen  476 LFITSVKRFGKEEEIY-----KIG-----TMVHTLAWND--TTNILCGLQDTCFSVWYYPNEV  526 (737)
T ss_pred             EEEEeehhcCchhhhh-----hhh-----hhhhhhhhcc--ccceeeeeccceEEEEEcCCcc
Confidence            7776554322211111     112     2233688884  4568889999999999887644

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=99.80  E-value=4.8e-18  Score=165.13  Aligned_cols=406  Identities=15%  Similarity=0.153  Sum_probs=238.2

Q ss_pred             EEEEecCCCeEEEEEcCCCcEEEEEccccceeeeeceeeeccCCCCcccccccccCCCCceeEEEEecCCCeEEEE-eCC
Q 001415          363 SMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVA-YSR  441 (1082)
Q Consensus       363 ~~~~spdg~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~-~~d  441 (1082)
                      -+.|||+|+| +|+.+.- .+.|-|.++-+.++.                    -.--+.|..+.|+.|.-+++.+ ..+
T Consensus        13 ~c~fSp~g~y-iAs~~~y-rlviRd~~tlq~~ql--------------------f~cldki~yieW~ads~~ilC~~yk~   70 (447)
T KOG4497|consen   13 FCSFSPCGNY-IASLSRY-RLVIRDSETLQLHQL--------------------FLCLDKIVYIEWKADSCHILCVAYKD   70 (447)
T ss_pred             ceeECCCCCe-eeeeeee-EEEEeccchhhHHHH--------------------HHHHHHhhheeeeccceeeeeeeecc
Confidence            4679999996 8877644 888888887665541                    1123478889999999887765 678


Q ss_pred             CeEEEEEccCCceeeEEEEeeccccCeeEEEecCCCCceEEEEEeCCCcEEEEEccCCceeEEeecCCcCeEEEeeeecC
Q 001415          442 HIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKE  521 (1082)
Q Consensus       442 ~~v~iwd~~~~~~~~~~~~~~~h~~~V~~l~fs~dg~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~  521 (1082)
                      +.|.+|++...+-..   .+....+++.++.|||||+. +|.+...|-.|.||.+.+.+....- -....+..++|+++ 
T Consensus        71 ~~vqvwsl~Qpew~c---kIdeg~agls~~~WSPdgrh-iL~tseF~lriTVWSL~t~~~~~~~-~pK~~~kg~~f~~d-  144 (447)
T KOG4497|consen   71 PKVQVWSLVQPEWYC---KIDEGQAGLSSISWSPDGRH-ILLTSEFDLRITVWSLNTQKGYLLP-HPKTNVKGYAFHPD-  144 (447)
T ss_pred             ceEEEEEeecceeEE---EeccCCCcceeeeECCCcce-EeeeecceeEEEEEEeccceeEEec-ccccCceeEEECCC-
Confidence            899999998876554   56677889999999999987 7888889999999999887765432 23344577787654 


Q ss_pred             CceEEEEecCCCc---EEEEecCCCCceeeecCCCCceEEEEEccCCCeeeecccccceeEEEecCCCCEEEEEeCCCeE
Q 001415          522 NIQFIFSTALDGK---IKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSI  598 (1082)
Q Consensus       522 ~~~~l~s~~~dg~---i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i  598 (1082)
                       |++.+.++.-..   +.+.....-.....+....-..+.+.|+|||                     +.++        
T Consensus       145 -g~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg---------------------~~la--------  194 (447)
T KOG4497|consen  145 -GQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDG---------------------NWLA--------  194 (447)
T ss_pred             -CceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCC---------------------cEEE--------
Confidence             467666654211   1111000000111222223333444555554                     4544        


Q ss_pred             EEEECCCcceEEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEecCCccceeecccccccccccccccCCCCccc
Q 001415          599 KFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKNGDVRS  678 (1082)
Q Consensus       599 ~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  678 (1082)
                       +||.--.-.+..+...   -.+..++|+|.+++|++|+.|+.+++.+--+-+ ....+. |.                 
T Consensus       195 -Vwd~~Leykv~aYe~~---lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk-~f~efl-hl-----------------  251 (447)
T KOG4497|consen  195 -VWDNVLEYKVYAYERG---LGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWK-PFGEFL-HL-----------------  251 (447)
T ss_pred             -Eecchhhheeeeeeec---cceeEEEeccccceEEeeccchhhhhhceeeee-ehhhhc-cc-----------------
Confidence             5553222122222211   147889999999999999999999987644331 111110 00                 


Q ss_pred             cCCCCceeeeccCCceeEEEecccCCCCccccccccCcccccceeEEEEccCCceeeecccCCeEEEeeccccccCCCCC
Q 001415          679 LADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGK  758 (1082)
Q Consensus       679 s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~  758 (1082)
                              .+-.|-+..+-..+.    ...         -.-...++.|.|..-         ...+|.........  .
T Consensus       252 --------~s~~dp~~~~~~ke~----~~~---------~ql~~~cLsf~p~~~---------~a~~~~~se~~YE~--~  299 (447)
T KOG4497|consen  252 --------CSYHDPTLHLLEKET----FSI---------VQLLHHCLSFTPTDL---------EAHIWEESETIYEQ--Q  299 (447)
T ss_pred             --------hhccCchhhhhhhhh----cch---------hhhcccccccCCCcc---------ccCccccchhhhhh--h
Confidence                    000001100000000    000         000112333443321         00111110000000  0


Q ss_pred             cccccCccccCCCCcceeecccCCCCCCCCccEEEeecCCCeEEEeeC---CeEEEEecCCCeeEEEECCCCCCeeEEEE
Q 001415          759 ATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASG---GKISLFNMMTFKTMATFMPPPPAATFLAF  835 (1082)
Q Consensus       759 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~l~~~sd---g~i~iwd~~~~~~~~~~~~~~~~v~~l~~  835 (1082)
                      . ....+....+.+.      .  .+..-.+.-++||+|..++++-.|   +.+.+||+...+....+. ....|....|
T Consensus       300 ~-~pv~~~~lkp~tD------~--pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLi-Qk~piraf~W  369 (447)
T KOG4497|consen  300 M-TPVKVHKLKPPTD------F--PNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVLI-QKHPIRAFEW  369 (447)
T ss_pred             h-cceeeecccCCCC------C--CCcccccceeeecCCceEEeeecCCCCceEEEEechhhhhhhhhh-hccceeEEEe
Confidence            0 0000000000010      0  113456778999999999999986   569999999876655554 5668999999


Q ss_pred             ecCCCcEEEEEeCCCcEEEEecccceeeeeecccccCEEEEEEeCCCCEEEEEeCCCc
Q 001415          836 HPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQ  893 (1082)
Q Consensus       836 sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~  893 (1082)
                      .| +...|+.......+++|......++.. .+..-.|..+.|.-+|..++-.+.|..
T Consensus       370 dP-~~prL~vctg~srLY~W~psg~~~V~v-P~~GF~i~~l~W~~~g~~i~l~~kDaf  425 (447)
T KOG4497|consen  370 DP-GRPRLVVCTGKSRLYFWAPSGPRVVGV-PKKGFNIQKLQWLQPGEFIVLCGKDAF  425 (447)
T ss_pred             CC-CCceEEEEcCCceEEEEcCCCceEEec-CCCCceeeeEEecCCCcEEEEEcCCce
Confidence            99 666666666677899998775444433 333467999999999999999998874

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.80  E-value=2.6e-19  Score=202.77  Aligned_cols=280  Identities=13%  Similarity=0.190  Sum_probs=211.3

Q ss_pred             cccccccccccccCccccCCCccCCCCCCCCcceeeecCCCCCceEEEEecCCCe---EEEEEcCCCcEEEEEcccccee
Q 001415          318 NLPVNVLPVSFTGHSHSHSHSQAFSTPEDLPKTVTRTLNQGSSPMSMDFHPVQQT---LLLVGTNVGDIGLWEVGSRERL  394 (1082)
Q Consensus       318 ~~~~~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~---llasgs~dg~i~iwd~~~~~~~  394 (1082)
                      ++++.+|.++|.....              .-+....+.-....+.++|++.|..   ++|.|..||.|.+||...-  +
T Consensus        38 ~~slEifeld~~~~~~--------------dlk~~~s~~s~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~--~  101 (1049)
T KOG0307|consen   38 SASLEIFELDFSDESS--------------DLKPVGSLQSSNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASI--I  101 (1049)
T ss_pred             ccccceeeecccCccc--------------cccccccccccccceeeeecccCCCccceeeccccCCceEEecchhh--c
Confidence            4556677666655321              1123344556778899999998886   6999999999999998652  0


Q ss_pred             eeeceeeeccCCCCcccccccccCCCCceeEEEEecCCC-eEEEEeCCCeEEEEEccCCceeeEEEEee--ccccCeeEE
Q 001415          395 VLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGS-LFGVAYSRHIVQIYSYHGGDEVRQHLEID--AHVGGVNDI  471 (1082)
Q Consensus       395 ~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~-~las~~~d~~v~iwd~~~~~~~~~~~~~~--~h~~~V~~l  471 (1082)
                      .          ....+. -.....|++.|..+.|++.+. +||+|+.||.|.|||+..-+...   ...  .-.+.|.++
T Consensus       102 ~----------~~~~~~-la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~---~~~~~~~~~eI~~l  167 (1049)
T KOG0307|consen  102 A----------NASEEV-LATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPF---TPGSQAPPSEIKCL  167 (1049)
T ss_pred             c----------CcchHH-HhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCC---CCCCCCCcccceEe
Confidence            0          000111 113678999999999999665 99999999999999998754332   221  245689999


Q ss_pred             EecCCCCceEEEEEeCCCcEEEEEccCCceeEEeecCCc--CeEEEeeeecCCceEEEEecCCC--cEEEEecCCCC-ce
Q 001415          472 AFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEA--PVYSVCPHHKENIQFIFSTALDG--KIKAWLYDNLG-SR  546 (1082)
Q Consensus       472 ~fs~dg~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~--~v~~~~~~~~~~~~~l~s~~~dg--~i~iwd~~~~~-~~  546 (1082)
                      +|+..-+. +|++++.+|.+.|||++..+.+-.+..|.+  .+..+.|+|+...+++++...|+  .|.+||++... ..
T Consensus       168 sWNrkvqh-ILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~  246 (1049)
T KOG0307|consen  168 SWNRKVSH-ILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPL  246 (1049)
T ss_pred             ccchhhhH-HhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCch
Confidence            99988776 899999999999999999988877776654  47789999987754444444443  59999988644 34


Q ss_pred             eeecCCCCceEEEEEccCCCeeeecccccceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEEecCCCCCCcCeEEE
Q 001415          547 VDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRF  626 (1082)
Q Consensus       547 ~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~  626 (1082)
                      ..++.|...|.++.|++.+.                    .++++++.|+.|.+|+.++++.+..+...+.  ++..+.|
T Consensus       247 k~~~~H~~GilslsWc~~D~--------------------~lllSsgkD~~ii~wN~~tgEvl~~~p~~~n--W~fdv~w  304 (1049)
T KOG0307|consen  247 KILEGHQRGILSLSWCPQDP--------------------RLLLSSGKDNRIICWNPNTGEVLGELPAQGN--WCFDVQW  304 (1049)
T ss_pred             hhhcccccceeeeccCCCCc--------------------hhhhcccCCCCeeEecCCCceEeeecCCCCc--ceeeeee
Confidence            45567777777777776653                    3788999999999999999999999986544  7899999


Q ss_pred             cCCC-CEEEEEECCCcEEEEEecCC
Q 001415          627 NKDG-CLLAVSTNDNGIKILATSDG  650 (1082)
Q Consensus       627 s~dg-~~l~~~~~dg~i~iwd~~~~  650 (1082)
                      +|.. ..+++++-||.|.|+.+.+.
T Consensus       305 ~pr~P~~~A~asfdgkI~I~sl~~~  329 (1049)
T KOG0307|consen  305 CPRNPSVMAAASFDGKISIYSLQGT  329 (1049)
T ss_pred             cCCCcchhhhheeccceeeeeeecC
Confidence            9955 48888999999999998765

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.80  E-value=4.4e-18  Score=176.23  Aligned_cols=223  Identities=17%  Similarity=0.188  Sum_probs=154.8

Q ss_pred             EeeccccCeeEEEecCCCCceEEEEEeCCCcEEEEEccCCceeEEe-ecCCcCeEEEeeeecCCceEEEEecCCCcEEEE
Q 001415          460 EIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIF-EGHEAPVYSVCPHHKENIQFIFSTALDGKIKAW  538 (1082)
Q Consensus       460 ~~~~h~~~V~~l~fs~dg~~~~l~s~s~d~~i~vwd~~~~~~~~~~-~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw  538 (1082)
                      ++.||++.|+|++|+.+|.  +|++||+|-.+.|||.-..+.++.+ +||...|.++.|.|..+...+++|..|..|+++
T Consensus        45 eL~GH~GCVN~LeWn~dG~--lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lf  122 (758)
T KOG1310|consen   45 ELTGHTGCVNCLEWNADGE--LLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLF  122 (758)
T ss_pred             hhccccceecceeecCCCC--EEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEE
Confidence            6889999999999999999  8999999999999999988888776 589999999999999888999999999999999


Q ss_pred             ecCCCCce----------eeecCCCCceEEEEEccCCCeeeecccccceeEEEecCCC-CEEEEEeCCCeEEEEECCCcc
Q 001415          539 LYDNLGSR----------VDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTK-NRFLAAGDDFSIKFWDMDSVQ  607 (1082)
Q Consensus       539 d~~~~~~~----------~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~  607 (1082)
                      |+...+..          ..+..|...|..                     ++..|++ ..+.++++||+|+-+|++...
T Consensus       123 dl~~~~~~~~d~~~~~~~~~~~cht~rVKr---------------------ia~~p~~PhtfwsasEDGtirQyDiREph  181 (758)
T KOG1310|consen  123 DLDSSKEGGMDHGMEETTRCWSCHTDRVKR---------------------IATAPNGPHTFWSASEDGTIRQYDIREPH  181 (758)
T ss_pred             ecccccccccccCccchhhhhhhhhhhhhh---------------------eecCCCCCceEEEecCCcceeeecccCCc
Confidence            99853321          122223333333                     4444444 578899999999999998632


Q ss_pred             eE-------E-EEecCCCCCCcCeEEEcC-CCCEEEEEECCCcEEEEEecCCccce-----------------eec-ccc
Q 001415          608 LL-------T-SIDADGGLPASPRIRFNK-DGCLLAVSTNDNGIKILATSDGIRLL-----------------RTF-ENL  660 (1082)
Q Consensus       608 ~~-------~-~~~~~~~~~~i~~~~~s~-dg~~l~~~~~dg~i~iwd~~~~~~~~-----------------~~~-~~~  660 (1082)
                      .-       . ............++.++| +..+|++|+.|...++||.+...+..                 ..+ .+|
T Consensus       182 ~c~p~~~~~~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~h  261 (758)
T KOG1310|consen  182 VCNPDEDCPSILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGH  261 (758)
T ss_pred             cCCccccccHHHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCcc
Confidence            11       0 011111223467899999 56789999999999999953211111                 000 011


Q ss_pred             ccccccc--ccccCCCCccccCCCCceeeeccCCceeEEEecccCCC
Q 001415          661 AYDASRT--SENSKNGDVRSLADVKPRITEESNDKSKVWKLTELSEP  705 (1082)
Q Consensus       661 ~~~~~~~--~~~~~~~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~  705 (1082)
                      .......  ........+.++|+|..+++.-....|+++|+...+.+
T Consensus       262 lkn~~gn~~~~~~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~~~~  308 (758)
T KOG1310|consen  262 LKNSQGNLDRYITCCTYVTFNPNGTELLVSWGGEHVYLFDVNEDKSP  308 (758)
T ss_pred             ccCcccccccceeeeEEEEECCCCcEEEEeeCCeEEEEEeecCCCCc
Confidence            1000000  00000112346889988888888789999999875443

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.79  E-value=3.4e-17  Score=159.09  Aligned_cols=230  Identities=13%  Similarity=0.128  Sum_probs=169.3

Q ss_pred             cCCceeeecccCCeEEEeeccccccCCCCCcccccCccccCCCCcceeecccCCCCCCCCccEEEeecCCCeEEEeeCCe
Q 001415          729 NSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGK  808 (1082)
Q Consensus       729 ~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~l~~~sdg~  808 (1082)
                      |+..++++.+.+.-|.+||.-+++...+-+        .+|.            ...-....+++|+|||..|.+|....
T Consensus       121 P~t~l~a~ssr~~PIh~wdaftG~lraSy~--------~ydh------------~de~taAhsL~Fs~DGeqlfaGykrc  180 (406)
T KOG2919|consen  121 PSTNLFAVSSRDQPIHLWDAFTGKLRASYR--------AYDH------------QDEYTAAHSLQFSPDGEQLFAGYKRC  180 (406)
T ss_pred             CccceeeeccccCceeeeeccccccccchh--------hhhh------------HHhhhhheeEEecCCCCeEeecccce
Confidence            566778888888888888765433221111        1110            01223456899999999999999999


Q ss_pred             EEEEec-CCCeeEEE---E----CCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEecccceeeeeecccccCEEEEEEeC
Q 001415          809 ISLFNM-MTFKTMAT---F----MPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSH  880 (1082)
Q Consensus       809 i~iwd~-~~~~~~~~---~----~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~  880 (1082)
                      |++||+ +.|+....   +    .+..+-+.+++|+|.+...+|+|+....+-||.-..+.++..+-+|.+.|+.+.|.+
T Consensus       181 irvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~e  260 (406)
T KOG2919|consen  181 IRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCE  260 (406)
T ss_pred             EEEeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEecc
Confidence            999999 44432221   1    123566899999998888999999999999999888999999999999999999999


Q ss_pred             CCCEEEEEeC-CCcEEEEEcCCcccccceeeeccCCCCCCCCCCcEEEEcCCCcEEEEE-ecCeEEEEEccC-cceeeee
Q 001415          881 ALNVLVSSGA-DSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQLAIFETTK-LECVKQW  957 (1082)
Q Consensus       881 d~~~l~s~s~-Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~-~d~~i~iwd~~~-~~~~~~~  957 (1082)
                      ||+.|.+|.. |-.|..||++....    .+-....|......-......|+|++|+++ .+|.|++||+++ |..+..+
T Consensus       261 dGn~lfsGaRk~dkIl~WDiR~~~~----pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~  336 (406)
T KOG2919|consen  261 DGNKLFSGARKDDKILCWDIRYSRD----PVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVT  336 (406)
T ss_pred             CcCeecccccCCCeEEEEeehhccc----hhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCccccc
Confidence            9999999875 67799999987432    222222232201112334557889999995 899999999988 6656555


Q ss_pred             ccCCCCcceeEEEEcCCCceEEEeecC
Q 001415          958 VPRESSAPITHATFSCDSQLVYACFLD  984 (1082)
Q Consensus       958 ~~~~h~~~i~~l~~s~dg~~l~t~s~d  984 (1082)
                      .  .|...++.+++.|--.++|+++..
T Consensus       337 ~--~~sd~vNgvslnP~mpilatssGq  361 (406)
T KOG2919|consen  337 G--NYSDTVNGVSLNPIMPILATSSGQ  361 (406)
T ss_pred             c--cccccccceecCcccceeeeccCc
Confidence            4  678899999999998888887643

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=99.79  E-value=1e-15  Score=165.29  Aligned_cols=490  Identities=13%  Similarity=0.154  Sum_probs=282.9

Q ss_pred             CCCCceEEEEecCCCeEEEEEcCCCcEEEEEccccceeeeeceeeeccCCCCcccccccccCCCCceeEEEEecC-----
Q 001415          357 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPD-----  431 (1082)
Q Consensus       357 h~~~v~~~~~spdg~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spd-----  431 (1082)
                      |.+.-.++.|+|.|  |+|-|+ ...|.+-|..+-+.+..                   +..|...|+.+.|+|-     
T Consensus        14 ~~sN~~A~Dw~~~G--LiAygs-hslV~VVDs~s~q~iqs-------------------ie~h~s~V~~VrWap~~~p~~   71 (1062)
T KOG1912|consen   14 SRSNRNAADWSPSG--LIAYGS-HSLVSVVDSRSLQLIQS-------------------IELHQSAVTSVRWAPAPSPRD   71 (1062)
T ss_pred             CcccccccccCccc--eEEEec-CceEEEEehhhhhhhhc-------------------cccCccceeEEEeccCCCchh
Confidence            44557889999999  788886 45788889888777764                   6778899999999882     


Q ss_pred             -C------CeEEEEeCCCeEEEEEccCCceeeEEEEeeccccCeeEEEecC---CCCceEEEEEeCCCcEEEEEccCCce
Q 001415          432 -G------SLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSH---PNKQLCVITCGDDKTIKVWDATNGAK  501 (1082)
Q Consensus       432 -g------~~las~~~d~~v~iwd~~~~~~~~~~~~~~~h~~~V~~l~fs~---dg~~~~l~s~s~d~~i~vwd~~~~~~  501 (1082)
                       +      -.||++...|.|.+||...+..+.   .+..|.++|..+.|-+   +.+. +|+.-....+|.+|+..+|+.
T Consensus        72 llS~~~~~lliAsaD~~GrIil~d~~~~s~~~---~l~~~~~~~qdl~W~~~rd~Srd-~LlaIh~ss~lvLwntdtG~k  147 (1062)
T KOG1912|consen   72 LLSPSSSQLLIASADISGRIILVDFVLASVIN---WLSHSNDSVQDLCWVPARDDSRD-VLLAIHGSSTLVLWNTDTGEK  147 (1062)
T ss_pred             ccCccccceeEEeccccCcEEEEEehhhhhhh---hhcCCCcchhheeeeeccCcchh-eeEEecCCcEEEEEEccCCce
Confidence             2      267888888999999999887665   6888999999999965   3323 566666678999999999999


Q ss_pred             eEEeecCCcCeEEEeeeecCCceEEEEecCCCcEEEEecCCCCceeeecCCCCceEEEEEccCCC-------eeeec---
Q 001415          502 QYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGT-------RTYQG---  571 (1082)
Q Consensus       502 ~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~-------~~~~~---  571 (1082)
                      +...........++.+.|-.. ..+..-+..|.+.+-+.-...+      +..+...+.+..+-.       ....+   
T Consensus       148 ~Wk~~ys~~iLs~f~~DPfd~-rh~~~l~s~g~vl~~~~l~~se------p~~pgk~~qI~sd~Sdl~~lere~at~ns~  220 (1062)
T KOG1912|consen  148 FWKYDYSHEILSCFRVDPFDS-RHFCVLGSKGFVLSCKDLGLSE------PDVPGKEFQITSDHSDLAHLERETATGNST  220 (1062)
T ss_pred             eeccccCCcceeeeeeCCCCc-ceEEEEccCceEEEEeccCCCC------CCCCceeEEEecCccchhhhhhhhhccccc
Confidence            988776666777777776554 3445455566666554432111      011111111111100       00000   


Q ss_pred             -cccc------ceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEEecCCCCCCcCeEEEcCCC--CEEEEEECCCcE
Q 001415          572 -FRKR------SLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDG--CLLAVSTNDNGI  642 (1082)
Q Consensus       572 -~~~~------~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~dg--~~l~~~~~dg~i  642 (1082)
                       ....      ....++|+|.-+.++-......+.++|++-..++.......+  .+.-+.+-|++  ..|++...||.+
T Consensus       221 ts~~~sa~fity~a~faf~p~~rn~lfi~~prellv~dle~~~~l~vvpier~--~akfv~vlP~~~rd~LfclH~nG~l  298 (1062)
T KOG1912|consen  221 TSTPASAYFITYCAQFAFSPHWRNILFITFPRELLVFDLEYECCLAVVPIERG--GAKFVDVLPDPRRDALFCLHSNGRL  298 (1062)
T ss_pred             cCCCcchhHHHHHHhhhcChhhhceEEEEeccceEEEcchhhceeEEEEeccC--CcceeEeccCCCcceEEEEecCCeE
Confidence             0000      011245677666566666677899999999888888876655  34456666654  579999999999


Q ss_pred             EEEEecCCccceeecccccccccccccccCCCCccccCCCCceeeeccCCceeEEEecccCCCCccccccccCcccccce
Q 001415          643 KILATSDGIRLLRTFENLAYDASRTSENSKNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKI  722 (1082)
Q Consensus       643 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i  722 (1082)
                      .+|-........+....        .+..                 +....+.+-...                 .+..+
T Consensus       299 tirvrk~~~~~f~~~~~--------~l~~-----------------dl~~Q~~~vr~m-----------------~~~rp  336 (1062)
T KOG1912|consen  299 TIRVRKEEPTEFKKPNA--------SLSM-----------------DLGEQVHVVRPM-----------------EEFRP  336 (1062)
T ss_pred             EEEEeeccCccccccch--------hhcc-----------------ccccceEEEeec-----------------hhccc
Confidence            99976543111111000        0000                 000011111110                 11122


Q ss_pred             eEEEEccC-CceeeecccCCeEEEeeccccccCCCCCcccccCccccCCCCcceeecccCCCCCCCCccEEEeecCCCeE
Q 001415          723 SRLIFTNS-GNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYV  801 (1082)
Q Consensus       723 ~~~~~s~~-~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~l  801 (1082)
                      ......|. ...++..-.+|...+|.+..+....++......-..-+|.......         -..-.-+.+|.||   
T Consensus       337 ~~~~~cPs~~sa~avl~s~g~~~~w~l~~~ri~~~~~s~~iel~~pf~f~~~~~~---------v~k~~l~~LS~dg---  404 (1062)
T KOG1912|consen  337 VIGASCPSTPSALAVLYSSGDSTFWQLSNGRIHLDYRSSSIELVLPFDFNLSTKL---------VGKTSLISLSDDG---  404 (1062)
T ss_pred             ceeecCCCChhhhhhhhhcchhHHHhhhcCCcCcccccccccccccccccCceee---------hhhccccchhhcC---
Confidence            22223333 3344455556667777666433322221100000000000000000         0000001112222   


Q ss_pred             EEeeCCeEEEEecCCCeeEEEECCCCCCeeEEEEecCCC-------cEEEEEeCCCcEEEEecccceeeeeecccccCEE
Q 001415          802 MSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDN-------NIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRIT  874 (1082)
Q Consensus       802 ~~~sdg~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~-------~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~  874 (1082)
                                 ...+|........ ....+-+.-.| ++       .++|.|+..|+|.++|+.++...+.+..|++.|.
T Consensus       405 -----------~h~sGs~~~~~~p-~p~~t~~~~~p-~~n~~~~~~pLvAvGT~sGTV~vvdvst~~v~~~fsvht~~Vk  471 (1062)
T KOG1912|consen  405 -----------SHSSGSTCVRMRP-MPELTKVENDP-GGNTPAGTVPLVAVGTNSGTVDVVDVSTNAVAASFSVHTSLVK  471 (1062)
T ss_pred             -----------CCCCCceeeeccc-CcccceeecCC-CCCccceeeeeEEeecCCceEEEEEecchhhhhhhccccccee
Confidence                       0011111111110 00011111111 11       2889999999999999999999999999999999


Q ss_pred             EEEEeCCCCEEEE---------EeCCCcEEEEEcCCcccccceeeeccCCCCCCCCCCcEEEEcCCCcEEEEE-ecCeEE
Q 001415          875 GLAFSHALNVLVS---------SGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQLA  944 (1082)
Q Consensus       875 ~l~~s~d~~~l~s---------~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~-~d~~i~  944 (1082)
                      ++.|-....++-.         ++--+.+.+-|+.+|-....+-++.++     ..+|..+..|..|+||+.. .+.-+.
T Consensus       472 gleW~g~sslvSfsys~~n~~sg~vrN~l~vtdLrtGlsk~fR~l~~~d-----espI~~irvS~~~~yLai~Fr~~plE  546 (1062)
T KOG1912|consen  472 GLEWLGNSSLVSFSYSHVNSASGGVRNDLVVTDLRTGLSKRFRGLQKPD-----ESPIRAIRVSSSGRYLAILFRREPLE  546 (1062)
T ss_pred             eeeeccceeEEEeeeccccccccceeeeEEEEEcccccccccccCCCCC-----cCcceeeeecccCceEEEEecccchH
Confidence            9999755543322         222245788899997643333222222     2679999999999999995 677899


Q ss_pred             EEEccCcce
Q 001415          945 IFETTKLEC  953 (1082)
Q Consensus       945 iwd~~~~~~  953 (1082)
                      +||+++..+
T Consensus       547 iwd~kt~~~  555 (1062)
T KOG1912|consen  547 IWDLKTLRM  555 (1062)
T ss_pred             HHhhccchH
Confidence            999876554

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.78  E-value=2.7e-17  Score=164.10  Aligned_cols=217  Identities=15%  Similarity=0.283  Sum_probs=167.0

Q ss_pred             cccCCCCceeEEEEec-CCCeEEEEeCCCeEEEEEccCCce----eeEEEEeeccccCeeEEEecCCCCceEEEEEeCCC
Q 001415          415 LVKDPGVSVNRVIWSP-DGSLFGVAYSRHIVQIYSYHGGDE----VRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDK  489 (1082)
Q Consensus       415 ~~~~h~~~V~~l~~sp-dg~~las~~~d~~v~iwd~~~~~~----~~~~~~~~~h~~~V~~l~fs~dg~~~~l~s~s~d~  489 (1082)
                      .+.||+++|..++|+| +...||+|+.|.+|.||.+..+..    ......+.||...|..++|.|.-.. +|+|++.|.
T Consensus        76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~N-VLlsag~Dn  154 (472)
T KOG0303|consen   76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPN-VLLSAGSDN  154 (472)
T ss_pred             CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchh-hHhhccCCc
Confidence            5889999999999999 788999999999999999875533    2345578999999999999999887 799999999


Q ss_pred             cEEEEEccCCceeEEeecCCcCeEEEeeeecCCceEEEEecCCCcEEEEecCCCCceeeecCCCC-ceEEEEEccCCCee
Q 001415          490 TIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGR-WCTTMAYSADGTRT  568 (1082)
Q Consensus       490 ~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-~v~~~~~s~d~~~~  568 (1082)
                      +|.+||+.+|+.+-++. |.+.|++++|+.  +|.++++.+.|+.||+||.++++....-..|.+ .-..+.|-.+|.  
T Consensus       155 ~v~iWnv~tgeali~l~-hpd~i~S~sfn~--dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~--  229 (472)
T KOG0303|consen  155 TVSIWNVGTGEALITLD-HPDMVYSMSFNR--DGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGK--  229 (472)
T ss_pred             eEEEEeccCCceeeecC-CCCeEEEEEecc--CCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCc--
Confidence            99999999999999988 999999999865  557999999999999999998777665544433 333344444443  


Q ss_pred             eecccccceeEEEecCCCCEEEEEe----CCCeEEEEECCCcce---EEEEecCCCCCCcCeEEEcCCCCEEEEE-ECCC
Q 001415          569 YQGFRKRSLGVVQFDTTKNRFLAAG----DDFSIKFWDMDSVQL---LTSIDADGGLPASPRIRFNKDGCLLAVS-TNDN  640 (1082)
Q Consensus       569 ~~~~~~~~i~~~~~~~~~~~l~~~~----~dg~i~iwd~~~~~~---~~~~~~~~~~~~i~~~~~s~dg~~l~~~-~~dg  640 (1082)
                                          +++.+    .+..+-+||...-+.   ...+...   ..|.---|.+|..+++.+ -.|+
T Consensus       230 --------------------i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDtS---nGvl~PFyD~dt~ivYl~GKGD~  286 (472)
T KOG0303|consen  230 --------------------IFTTGFSRMSERQIALWDPNNLEEPIALQELDTS---NGVLLPFYDPDTSIVYLCGKGDS  286 (472)
T ss_pred             --------------------eeeeccccccccceeccCcccccCcceeEEeccC---CceEEeeecCCCCEEEEEecCCc
Confidence                                33333    578899998765432   3333322   235555678888877654 5799


Q ss_pred             cEEEEEecCCccceeecccc
Q 001415          641 GIKILATSDGIRLLRTFENL  660 (1082)
Q Consensus       641 ~i~iwd~~~~~~~~~~~~~~  660 (1082)
                      .|+.|.+.+....+..+...
T Consensus       287 ~IRYyEit~d~P~~hyln~f  306 (472)
T KOG0303|consen  287 SIRYFEITNEPPFVHYLNTF  306 (472)
T ss_pred             ceEEEEecCCCceeEEeccc
Confidence            99999998875555555443

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.77  E-value=2.2e-17  Score=155.90  Aligned_cols=308  Identities=14%  Similarity=0.204  Sum_probs=193.5

Q ss_pred             ceeEEeecCCcCeEEEeeeecCCceEEEEecCCCcEEEEecCCCCceeeec-CCCCceEEEEEccCCCeeeeccccccee
Q 001415          500 AKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYE-APGRWCTTMAYSADGTRTYQGFRKRSLG  578 (1082)
Q Consensus       500 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~~~~s~d~~~~~~~~~~~~i~  578 (1082)
                      .+...+++|.+.|+++.|..+   .+|++|..-|.|++|++.+......+. .+...++.+..-|++             
T Consensus         5 dP~fvLRp~~~~v~s~~fqa~---~rL~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~d-------------   68 (323)
T KOG0322|consen    5 DPFFVLRPHSSSVTSVLFQAN---ERLMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPND-------------   68 (323)
T ss_pred             CCeeEeccccchheehhhccc---hhhhcccccceEEEEEeecCccchhhhhhccceeeceeecCCc-------------
Confidence            345677789999999998544   369999999999999999988877777 455566666666654             


Q ss_pred             EEEecCCCCEEEEEeCCCeEEEEECCCcceEEEEecCCCCCCcCeEEEcCCCCEEEEEECCC-cEEEEEecCCccceeec
Q 001415          579 VVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDN-GIKILATSDGIRLLRTF  657 (1082)
Q Consensus       579 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg-~i~iwd~~~~~~~~~~~  657 (1082)
                               .+.+-+.|+.+.+|++..+..+..-..     .++++-|.+..  +...+... ..-.++-+.... .+..
T Consensus        69 ---------~l~tqgRd~~L~lw~ia~s~~i~i~Si-----~~nslgFCrfS--l~~~~k~~eqll~yp~rgsde-~h~~  131 (323)
T KOG0322|consen   69 ---------SLDTQGRDPLLILWTIAYSAFISIHSI-----VVNSLGFCRFS--LVKKPKNSEQLLEYPSRGSDE-THKQ  131 (323)
T ss_pred             ---------chhhcCCCceEEEEEccCcceEEEeee-----eccccccccce--eccCCCcchhheecCCcccch-hhhh
Confidence                     488889999999999987655443221     23333333311  01100000 111111110000 0000


Q ss_pred             ccccccccccccccCCCCccccCCCCceeeeccCCceeEEEecccCCCCccccccccCcccccceeEEEEcc-CCc--ee
Q 001415          658 ENLAYDASRTSENSKNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTN-SGN--AI  734 (1082)
Q Consensus       658 ~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~-~~~--~l  734 (1082)
                                                   -++..-.+.+-+-.              .....+.+.+..+.. ++.  .+
T Consensus       132 -----------------------------D~g~~tqv~i~dd~--------------~~~Klgsvmc~~~~~~c~s~~ll  168 (323)
T KOG0322|consen  132 -----------------------------DGGDTTQVQIADDS--------------ERSKLGSVMCQDKDHACGSTFLL  168 (323)
T ss_pred             -----------------------------ccCccceeEccCch--------------hccccCceeeeeccccccceEEE
Confidence                                         00000011111111              011233344333222 222  35


Q ss_pred             eecccCCeEEEeeccccccCCCCCcccccCccccCCCCcceeecccCCCCCCCCccEEEeecCCCeEEEee-CCeEEEEe
Q 001415          735 LALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFN  813 (1082)
Q Consensus       735 ~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~l~~~s-dg~i~iwd  813 (1082)
                      +++.++|.+.+||+...+...             +..........  ...|..+|.++.|.+.-..=++|+ +..+..|+
T Consensus       169 laGyEsghvv~wd~S~~~~~~-------------~~~~~~kv~~~--~ash~qpvlsldyas~~~rGisgga~dkl~~~S  233 (323)
T KOG0322|consen  169 LAGYESGHVVIWDLSTGDKII-------------QLPQSSKVESP--NASHKQPVLSLDYASSCDRGISGGADDKLVMYS  233 (323)
T ss_pred             EEeccCCeEEEEEccCCceee-------------ccccccccccc--hhhccCcceeeeechhhcCCcCCCccccceeee
Confidence            677778999999987642111             11111111111  123889999999976544444444 56788888


Q ss_pred             cCCC--ee--EEEECCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEecccceeeeeecccccCEEEEEEeCCCCEEEEEe
Q 001415          814 MMTF--KT--MATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSG  889 (1082)
Q Consensus       814 ~~~~--~~--~~~~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s  889 (1082)
                      +...  .+  ...+......|..+.+-| |++.+|+++.|+.||||+.++...++.++-|++.|++++|+||...+|.++
T Consensus       234 l~~s~gslq~~~e~~lknpGv~gvrIRp-D~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~lmAaas  312 (323)
T KOG0322|consen  234 LNHSTGSLQIRKEITLKNPGVSGVRIRP-DGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCELMAAAS  312 (323)
T ss_pred             eccccCcccccceEEecCCCccceEEcc-CCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCchhhhcc
Confidence            7632  22  222233345688899999 999999999999999999999999999999999999999999999999999


Q ss_pred             CCCcEEEEEc
Q 001415          890 ADSQLCVWSS  899 (1082)
Q Consensus       890 ~Dg~i~vwd~  899 (1082)
                      .|++|-+|++
T Consensus       313 kD~rISLWkL  322 (323)
T KOG0322|consen  313 KDARISLWKL  322 (323)
T ss_pred             CCceEEeeec
Confidence            9999999986

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.77  E-value=5.4e-17  Score=157.72  Aligned_cols=280  Identities=15%  Similarity=0.264  Sum_probs=188.2

Q ss_pred             eeEEEecCCCCceEEEEEeCCCcEEEEEccCC-------ce-----eEEee-cCCcCeEEEeeee-----cCCceEEEEe
Q 001415          468 VNDIAFSHPNKQLCVITCGDDKTIKVWDATNG-------AK-----QYIFE-GHEAPVYSVCPHH-----KENIQFIFST  529 (1082)
Q Consensus       468 V~~l~fs~dg~~~~l~s~s~d~~i~vwd~~~~-------~~-----~~~~~-~h~~~v~~~~~~~-----~~~~~~l~s~  529 (1082)
                      ...+.|||||.  .|++-+.|..+++|++-..       ..     ..+++ .....|...+|.+     .++..++++.
T Consensus        52 ~kgckWSPDGS--ciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~s  129 (406)
T KOG2919|consen   52 LKGCKWSPDGS--CILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVS  129 (406)
T ss_pred             hccceeCCCCc--eEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeec
Confidence            44689999999  8999999999999987521       11     11111 1234567777652     3455789999


Q ss_pred             cCCCcEEEEecCCCCceeeecCCCC-----ceEEEEEccCCCeeeecccccceeEEEecCCCCEEEEEeCCCeEEEEEC-
Q 001415          530 ALDGKIKAWLYDNLGSRVDYEAPGR-----WCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDM-  603 (1082)
Q Consensus       530 ~~dg~i~iwd~~~~~~~~~~~~~~~-----~v~~~~~s~d~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~-  603 (1082)
                      +.+.-|++||.-+++....+..-..     ...+++|+|||.                     +|++| ....|+++|+ 
T Consensus       130 sr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGe---------------------qlfaG-ykrcirvFdt~  187 (406)
T KOG2919|consen  130 SRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGE---------------------QLFAG-YKRCIRVFDTS  187 (406)
T ss_pred             cccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCC---------------------eEeec-ccceEEEeecc
Confidence            9999999999998887765554322     233455555554                     66654 4678999998 


Q ss_pred             CCcceEEEEe--c---CCCCCCcCeEEEcC-CCCEEEEEECCCcEEEEEecCCccceeecccccccccccccccCCCCcc
Q 001415          604 DSVQLLTSID--A---DGGLPASPRIRFNK-DGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKNGDVR  677 (1082)
Q Consensus       604 ~~~~~~~~~~--~---~~~~~~i~~~~~s~-dg~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  677 (1082)
                      +.|..-..+.  .   .+...-+.+++|+| +.+.+++|+....+-||.-... .+...+                    
T Consensus       188 RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~-~pl~ll--------------------  246 (406)
T KOG2919|consen  188 RPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGR-RPLQLL--------------------  246 (406)
T ss_pred             CCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCC-Cceeee--------------------
Confidence            5554322211  1   12233567888998 5568888887766666543322 000000                    


Q ss_pred             ccCCCCceeeeccCCceeEEEecccCCCCccccccccCcccccceeEEEEccCCceeeecccCCeEEEeeccccccCCCC
Q 001415          678 SLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSG  757 (1082)
Q Consensus       678 ~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~  757 (1082)
                                                                                                      
T Consensus       247 --------------------------------------------------------------------------------  246 (406)
T KOG2919|consen  247 --------------------------------------------------------------------------------  246 (406)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CcccccCccccCCCCcceeecccCCCCCCCCccEEEeecCCCeEEEee--CCeEEEEecCC-CeeEEEECCCCC-CeeE-
Q 001415          758 KATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS--GGKISLFNMMT-FKTMATFMPPPP-AATF-  832 (1082)
Q Consensus       758 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~l~~~s--dg~i~iwd~~~-~~~~~~~~~~~~-~v~~-  832 (1082)
                                               .+|.+.|+.++|.+||..|.+|.  +..|..||++. ..++..+..|.. .=.. 
T Consensus       247 -------------------------ggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI  301 (406)
T KOG2919|consen  247 -------------------------GGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDPVYALERHVGDTNQRI  301 (406)
T ss_pred             -------------------------cccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccchhhhhhhhccCccceE
Confidence                                     02667777777777777777776  56788888874 344555555544 2223 


Q ss_pred             -EEEecCCCcEEEEEeCCCcEEEEeccc-ceeeeeecccccCEEEEEEeCCCCEEEEEeCCCcEEEEEcCC
Q 001415          833 -LAFHPQDNNIIAIGMDDSSIQIYNVRV-DEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDG  901 (1082)
Q Consensus       833 -l~~sp~~~~~lasg~~dg~v~iwd~~~-~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~  901 (1082)
                       ....| ++++||+|+.||.|++||+++ |..+..+..|+..|+.++++|--.++|+++..   +++...+
T Consensus       302 ~FDld~-~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd~vNgvslnP~mpilatssGq---r~f~~~~  368 (406)
T KOG2919|consen  302 LFDLDP-KGEILASGDTDGSVRVWDLKDLGNEVSVTGNYSDTVNGVSLNPIMPILATSSGQ---RIFKYPK  368 (406)
T ss_pred             EEecCC-CCceeeccCCCccEEEEecCCCCCcccccccccccccceecCcccceeeeccCc---eeecCCC
Confidence             44567 899999999999999999998 77788888899999999999999999988754   4454433

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.76  E-value=4.8e-17  Score=162.31  Aligned_cols=245  Identities=14%  Similarity=0.200  Sum_probs=175.3

Q ss_pred             CCCcceeeecCCCCCceEEEEecCCCeEEEEEcCCCcEEEEEccccceeeeeceeeeccCCCCcccccccccCCCCceeE
Q 001415          346 DLPKTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNR  425 (1082)
Q Consensus       346 ~~~~~~~~~~~h~~~v~~~~~spdg~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~  425 (1082)
                      .++...-..-+|+++|..++|+|-....+|+||.|.+|.||++..+.+....            ......|.+|...|--
T Consensus        69 r~d~~~P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~l------------tepvv~L~gH~rrVg~  136 (472)
T KOG0303|consen   69 RMDASYPLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDL------------TEPVVELYGHQRRVGL  136 (472)
T ss_pred             ccCCCCCCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCc------------ccceEEEeecceeEEE
Confidence            3444444566899999999999998889999999999999999776554321            1122358999999999


Q ss_pred             EEEec-CCCeEEEEeCCCeEEEEEccCCceeeEEEEeeccccCeeEEEecCCCCceEEEEEeCCCcEEEEEccCCceeEE
Q 001415          426 VIWSP-DGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYI  504 (1082)
Q Consensus       426 l~~sp-dg~~las~~~d~~v~iwd~~~~~~~~~~~~~~~h~~~V~~l~fs~dg~~~~l~s~s~d~~i~vwd~~~~~~~~~  504 (1082)
                      ++|.| -.+.|++++.|.+|.|||+.+|+.+.   ++. |.+.|+++.|+.||.  ++++.+.|+.|||||.++++.+..
T Consensus       137 V~wHPtA~NVLlsag~Dn~v~iWnv~tgeali---~l~-hpd~i~S~sfn~dGs--~l~TtckDKkvRv~dpr~~~~v~e  210 (472)
T KOG0303|consen  137 VQWHPTAPNVLLSAGSDNTVSIWNVGTGEALI---TLD-HPDMVYSMSFNRDGS--LLCTTCKDKKVRVIDPRRGTVVSE  210 (472)
T ss_pred             EeecccchhhHhhccCCceEEEEeccCCceee---ecC-CCCeEEEEEeccCCc--eeeeecccceeEEEcCCCCcEeee
Confidence            99999 56789999999999999999999765   555 999999999999999  899999999999999999999998


Q ss_pred             eecCCcCeEE-EeeeecCCceEEEEec---CCCcEEEEecCCCCceeeecCCCCceEEEEEccCCCeeeecccccceeEE
Q 001415          505 FEGHEAPVYS-VCPHHKENIQFIFSTA---LDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVV  580 (1082)
Q Consensus       505 ~~~h~~~v~~-~~~~~~~~~~~l~s~~---~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~i~~~  580 (1082)
                      -.+|.+.=.. +.|.  .++..+.+|-   .+..+-+||..+.+....+..-.                   ....+..-
T Consensus       211 ~~~heG~k~~Raifl--~~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~elD-------------------tSnGvl~P  269 (472)
T KOG0303|consen  211 GVAHEGAKPARAIFL--ASGKIFTTGFSRMSERQIALWDPNNLEEPIALQELD-------------------TSNGVLLP  269 (472)
T ss_pred             cccccCCCcceeEEe--ccCceeeeccccccccceeccCcccccCcceeEEec-------------------cCCceEEe
Confidence            8888764222 2233  4445444442   36789999987655433221100                   00122222


Q ss_pred             EecCCCCEEEE-EeCCCeEEEEECCCcce-EEEEecCCCCCCcCeEEEcCC
Q 001415          581 QFDTTKNRFLA-AGDDFSIKFWDMDSVQL-LTSIDADGGLPASPRIRFNKD  629 (1082)
Q Consensus       581 ~~~~~~~~l~~-~~~dg~i~iwd~~~~~~-~~~~~~~~~~~~i~~~~~s~d  629 (1082)
                      -|+++.+.+.. |-.|+.||.|.+....+ +.-+.......+-..+.|-|.
T Consensus       270 FyD~dt~ivYl~GKGD~~IRYyEit~d~P~~hyln~f~S~epQRG~g~mPK  320 (472)
T KOG0303|consen  270 FYDPDTSIVYLCGKGDSSIRYFEITNEPPFVHYLNTFSSKEPQRGMGFMPK  320 (472)
T ss_pred             eecCCCCEEEEEecCCcceEEEEecCCCceeEEecccccCCcccccccccc
Confidence            34555555544 55899999999877653 222322222334566777774

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.76  E-value=3.6e-17  Score=154.53  Aligned_cols=310  Identities=14%  Similarity=0.175  Sum_probs=197.2

Q ss_pred             ccccCCCCceeEEEEecCCCeEEEEeCCCeEEEEEccCCceeeEEEEee-ccccCeeEEEecCCCCceEEEEEeCCCcEE
Q 001415          414 ALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEID-AHVGGVNDIAFSHPNKQLCVITCGDDKTIK  492 (1082)
Q Consensus       414 ~~~~~h~~~V~~l~~spdg~~las~~~d~~v~iwd~~~~~~~~~~~~~~-~h~~~V~~l~fs~dg~~~~l~s~s~d~~i~  492 (1082)
                      -++.+|.+.|+++.|-.+++ |.+|..-|.|++|++++.....   .+. .|...|+.+.-.|++.   +.+-+.|+.+.
T Consensus         8 fvLRp~~~~v~s~~fqa~~r-L~sg~~~G~V~~w~lqt~r~~~---~~r~~g~~~it~lq~~p~d~---l~tqgRd~~L~   80 (323)
T KOG0322|consen    8 FVLRPHSSSVTSVLFQANER-LMSGLSVGIVKMWVLQTERDLP---LIRLFGRLFITNLQSIPNDS---LDTQGRDPLLI   80 (323)
T ss_pred             eEeccccchheehhhccchh-hhcccccceEEEEEeecCccch---hhhhhccceeeceeecCCcc---hhhcCCCceEE
Confidence            35789999999999988776 8889999999999999987655   466 4677899999999865   89999999999


Q ss_pred             EEEccCCceeEEeecCCcCeEEEeeeecCCceEEEEecCCCcEEEEecCCCCceeeecCCCCceEEEEEccCCCeeeecc
Q 001415          493 VWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGF  572 (1082)
Q Consensus       493 vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~  572 (1082)
                      +|++.-+..+..   |.-.++++.|.+..    +...+...   .|                    +.+.|+...-. . 
T Consensus        81 lw~ia~s~~i~i---~Si~~nslgFCrfS----l~~~~k~~---eq--------------------ll~yp~rgsde-~-  128 (323)
T KOG0322|consen   81 LWTIAYSAFISI---HSIVVNSLGFCRFS----LVKKPKNS---EQ--------------------LLEYPSRGSDE-T-  128 (323)
T ss_pred             EEEccCcceEEE---eeeeccccccccce----eccCCCcc---hh--------------------heecCCcccch-h-
Confidence            999987654432   33445555543321    22222111   11                    11111110000 0 


Q ss_pred             cccceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEEecCCCCCCcCeEEEcC-CC--CEEEEEECCCcEEEEEecC
Q 001415          573 RKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNK-DG--CLLAVSTNDNGIKILATSD  649 (1082)
Q Consensus       573 ~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~-dg--~~l~~~~~dg~i~iwd~~~  649 (1082)
                                     +.--++..-.+++-|-..         ......+.+..+.- ++  -++++|.++|.+.+||+.+
T Consensus       129 ---------------h~~D~g~~tqv~i~dd~~---------~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~  184 (323)
T KOG0322|consen  129 ---------------HKQDGGDTTQVQIADDSE---------RSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLST  184 (323)
T ss_pred             ---------------hhhccCccceeEccCchh---------ccccCceeeeeccccccceEEEEEeccCCeEEEEEccC
Confidence                           000011111122111100         00011122222111 12  2466788889999999887


Q ss_pred             CccceeecccccccccccccccCCCCccccCCCCceeeeccCCceeEEEecccCCCCccccccccCcccccceeEEEEcc
Q 001415          650 GIRLLRTFENLAYDASRTSENSKNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTN  729 (1082)
Q Consensus       650 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~  729 (1082)
                      +...+. +...                                    |..            ..+...|..++.++.|.+
T Consensus       185 ~~~~~~-~~~~------------------------------------~kv------------~~~~ash~qpvlsldyas  215 (323)
T KOG0322|consen  185 GDKIIQ-LPQS------------------------------------SKV------------ESPNASHKQPVLSLDYAS  215 (323)
T ss_pred             Cceeec-cccc------------------------------------ccc------------ccchhhccCcceeeeech
Confidence            722211 1100                                    000            001112778888888887


Q ss_pred             CCceeeecccCCeEEEeeccccccCCCCCcccccCccccCCCCcceeecccCCCCCCCCccEEEeecCCCeEEEee-CCe
Q 001415          730 SGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGK  808 (1082)
Q Consensus       730 ~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~l~~~s-dg~  808 (1082)
                      .-..=++++.+..+..|+++....+               ..-+..+.  +    ..-.+..+.+-||++.+|+++ |+.
T Consensus       216 ~~~rGisgga~dkl~~~Sl~~s~gs---------------lq~~~e~~--l----knpGv~gvrIRpD~KIlATAGWD~R  274 (323)
T KOG0322|consen  216 SCDRGISGGADDKLVMYSLNHSTGS---------------LQIRKEIT--L----KNPGVSGVRIRPDGKILATAGWDHR  274 (323)
T ss_pred             hhcCCcCCCccccceeeeeccccCc---------------ccccceEE--e----cCCCccceEEccCCcEEeecccCCc
Confidence            7666677777778888876532110               00011111  1    345678899999999999998 999


Q ss_pred             EEEEecCCCeeEEEECCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEec
Q 001415          809 ISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNV  857 (1082)
Q Consensus       809 i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~  857 (1082)
                      |+||+.++..++..+.-|.+.|++++|+| +..++|.++.|++|.+|++
T Consensus       275 iRVyswrtl~pLAVLkyHsagvn~vAfsp-d~~lmAaaskD~rISLWkL  322 (323)
T KOG0322|consen  275 IRVYSWRTLNPLAVLKYHSAGVNAVAFSP-DCELMAAASKDARISLWKL  322 (323)
T ss_pred             EEEEEeccCCchhhhhhhhcceeEEEeCC-CCchhhhccCCceEEeeec
Confidence            99999999999999999999999999999 8889999999999999986

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.76  E-value=1.4e-16  Score=158.15  Aligned_cols=121  Identities=10%  Similarity=0.135  Sum_probs=98.3

Q ss_pred             cccCCCCceeEEEEecCCCeEEEEeCCCeEEEEEccCC------ceeeEEEEee-ccccCeeEEEecCCCCceEEEEEeC
Q 001415          415 LVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGG------DEVRQHLEID-AHVGGVNDIAFSHPNKQLCVITCGD  487 (1082)
Q Consensus       415 ~~~~h~~~V~~l~~spdg~~las~~~d~~v~iwd~~~~------~~~~~~~~~~-~h~~~V~~l~fs~dg~~~~l~s~s~  487 (1082)
                      -+.+|.+.|.++.||.++++||+|+.|..+++|+++..      +.+.   ... .|...|.|++|...+.  .+++|+.
T Consensus        51 D~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~---~~~~~H~SNIF~L~F~~~N~--~~~SG~~  125 (609)
T KOG4227|consen   51 DVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIG---VMEHPHRSNIFSLEFDLENR--FLYSGER  125 (609)
T ss_pred             hhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCce---eccCccccceEEEEEccCCe--eEecCCC
Confidence            47899999999999999999999999999999998632      2222   222 3557999999998777  7999999


Q ss_pred             CCcEEEEEccCCceeEEeec--CCcCeEEEeeeecCCceEEEEecCCCcEEEEecCC
Q 001415          488 DKTIKVWDATNGAKQYIFEG--HEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDN  542 (1082)
Q Consensus       488 d~~i~vwd~~~~~~~~~~~~--h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~  542 (1082)
                      +++|...|+++.+.+..+..  ..+.|+.+..+|..  +.+++.+.++.|.+||.+.
T Consensus       126 ~~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~D--N~~~~~t~~~~V~~~D~Rd  180 (609)
T KOG4227|consen  126 WGTVIKHDIETKQSIYVANENNNRGDVYHMDQHPTD--NTLIVVTRAKLVSFIDNRD  180 (609)
T ss_pred             cceeEeeecccceeeeeecccCcccceeecccCCCC--ceEEEEecCceEEEEeccC
Confidence            99999999999998887752  23478888888764  5788888888888887764

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.76  E-value=1.3e-18  Score=188.89  Aligned_cols=284  Identities=16%  Similarity=0.247  Sum_probs=213.6

Q ss_pred             ceeeecCCCCCceEEEEecCCCeEEEEEcCCCcEEEEEccccceeeeeceeeeccCCCCcccccccccCCCCceeEEEEe
Q 001415          350 TVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWS  429 (1082)
Q Consensus       350 ~~~~~~~h~~~v~~~~~spdg~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s  429 (1082)
                      .+.++++|...|+|+.|...|+| +++|+.|..|+||..+++.++..                   ..||.+.|+.++.+
T Consensus       182 ~ikrLlgH~naVyca~fDrtg~~-Iitgsdd~lvKiwS~et~~~lAs-------------------~rGhs~ditdlavs  241 (1113)
T KOG0644|consen  182 NIKRLLGHRNAVYCAIFDRTGRY-IITGSDDRLVKIWSMETARCLAS-------------------CRGHSGDITDLAVS  241 (1113)
T ss_pred             HHHHHHhhhhheeeeeeccccce-EeecCccceeeeeeccchhhhcc-------------------CCCCccccchhccc
Confidence            34578899999999999999996 99999999999999999998875                   88999999999999


Q ss_pred             cCCCeEEEEeCCCeEEEEEccCCceeeEEEEeeccccCeeEEEecCCCCceEEEEEeCCCcEEEEEccCCceeEE---ee
Q 001415          430 PDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYI---FE  506 (1082)
Q Consensus       430 pdg~~las~~~d~~v~iwd~~~~~~~~~~~~~~~h~~~V~~l~fs~dg~~~~l~s~s~d~~i~vwd~~~~~~~~~---~~  506 (1082)
                      .+..++|+++.|..|++|.+..+..+.   .+.||++.|++++|+|-      .+.+.||++++||.+-.-.+..   +.
T Consensus       242 ~~n~~iaaaS~D~vIrvWrl~~~~pvs---vLrghtgavtaiafsP~------~sss~dgt~~~wd~r~~~~~y~prp~~  312 (1113)
T KOG0644|consen  242 SNNTMIAAASNDKVIRVWRLPDGAPVS---VLRGHTGAVTAIAFSPR------ASSSDDGTCRIWDARLEPRIYVPRPLK  312 (1113)
T ss_pred             hhhhhhhhcccCceEEEEecCCCchHH---HHhccccceeeeccCcc------ccCCCCCceEeccccccccccCCCCCC
Confidence            999999999999999999999998777   78999999999999984      4778999999999871111111   11


Q ss_pred             c-CCcCeEEEeeeecCCceEEEEecCCCcEEEEecCCCCceeeecCCCCceEEEEEccCCCeeeecccccceeEEEecCC
Q 001415          507 G-HEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTT  585 (1082)
Q Consensus       507 ~-h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~i~~~~~~~~  585 (1082)
                      . ....+.++.|  ..++..+++++.|+.-..|.......      +...+.-+.++.|-                    
T Consensus       313 ~~~~~~~~s~~~--~~~~~~f~Tgs~d~ea~n~e~~~l~~------~~~~lif~t~ssd~--------------------  364 (1113)
T KOG0644|consen  313 FTEKDLVDSILF--ENNGDRFLTGSRDGEARNHEFEQLAW------RSNLLIFVTRSSDL--------------------  364 (1113)
T ss_pred             cccccceeeeec--cccccccccccCCcccccchhhHhhh------hccceEEEeccccc--------------------
Confidence            1 1233444444  34456789999999888885542111      00000111111110                    


Q ss_pred             CCEEEEEeCCCeEEEEECCCcceEEEEecCCCCCCcCeEEEcC-CCCEEEEEECCCcEEEEEecCCccceeecccccccc
Q 001415          586 KNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNK-DGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDA  664 (1082)
Q Consensus       586 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~-dg~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~  664 (1082)
                      ..+.+++-.+-.+++|++.+|.+...+.++.+  .+..+.++| +.....+++.||...|||+..+........+|..  
T Consensus       365 ~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd--~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~~gh~k--  440 (1113)
T KOG0644|consen  365 SSIVVTARNDHRLCVWNLYTGQLLHNLMGHSD--EVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYFIGHGK--  440 (1113)
T ss_pred             cccceeeeeeeEeeeeecccchhhhhhccccc--ceeeeeecCCCcHhhhhccCCCceEeeecccCCcceeeecccce--
Confidence            12456666788899999999999988887766  678899999 5566678899999999999988554444444322  


Q ss_pred             cccccccCCCCccccCCCCceeeeccCCceeEEEeccc
Q 001415          665 SRTSENSKNGDVRSLADVKPRITEESNDKSKVWKLTEL  702 (1082)
Q Consensus       665 ~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~iw~~~~~  702 (1082)
                              ..+.+++++|..++....-|.+.+......
T Consensus       441 --------l~d~kFSqdgts~~lsd~hgql~i~g~gqs  470 (1113)
T KOG0644|consen  441 --------LVDGKFSQDGTSIALSDDHGQLYILGTGQS  470 (1113)
T ss_pred             --------eeccccCCCCceEecCCCCCceEEeccCCC
Confidence                    223445999999998888888888876554

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.75  E-value=1.6e-17  Score=188.54  Aligned_cols=253  Identities=15%  Similarity=0.202  Sum_probs=193.9

Q ss_pred             cccceeEEEEccCCce----eeecccCCeEEEeeccccccCCCCCcccccCccccCCCCcceeecccCCCCCCCCccEEE
Q 001415          718 RATKISRLIFTNSGNA----ILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFA  793 (1082)
Q Consensus       718 ~~~~i~~~~~s~~~~~----l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~  793 (1082)
                      ...+...++|.+.|..    |+.+..||.|.+|+......+.+..                .   ......|.+.|..+.
T Consensus        63 s~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~----------------~---la~~~~h~G~V~gLD  123 (1049)
T KOG0307|consen   63 SSNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEE----------------V---LATKSKHTGPVLGLD  123 (1049)
T ss_pred             ccccceeeeecccCCCccceeeccccCCceEEecchhhccCcchH----------------H---HhhhcccCCceeeee
Confidence            4567788999998876    7888889999999865321110000                0   111223999999999


Q ss_pred             eecCCC-eEEEee-CCeEEEEecCCCeeEEEEC--CCCCCeeEEEEecCCCcEEEEEeCCCcEEEEecccceeeeeeccc
Q 001415          794 LSKNDS-YVMSAS-GGKISLFNMMTFKTMATFM--PPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGH  869 (1082)
Q Consensus       794 ~s~dg~-~l~~~s-dg~i~iwd~~~~~~~~~~~--~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h  869 (1082)
                      |++... +||+|+ +|.|.|||+.+.+...++.  .....|.+++|+....++||+++.+|.+.|||++..+.+-.+..|
T Consensus       124 fN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~  203 (1049)
T KOG0307|consen  124 FNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDT  203 (1049)
T ss_pred             ccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccC
Confidence            999777 888887 5999999999765555542  245679999999878889999999999999999998888777766


Q ss_pred             cc--CEEEEEEeCCC-CEEEEEeCCC---cEEEEEcCCcccccceeeeccCCCCCCCCCCcEEEEcCCCcEEEEEecCeE
Q 001415          870 SK--RITGLAFSHAL-NVLVSSGADS---QLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQL  943 (1082)
Q Consensus       870 ~~--~V~~l~~s~d~-~~l~s~s~Dg---~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~~d~~i  943 (1082)
                      .+  .+..++|+|+. ..|++++.|.   .|.+||++.-                                         
T Consensus       204 ~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~a-----------------------------------------  242 (1049)
T KOG0307|consen  204 PGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFA-----------------------------------------  242 (1049)
T ss_pred             CCccceeeeeeCCCCceeeeeecCCCCCceeEeeccccc-----------------------------------------
Confidence            55  46789999986 3456665543   4777877651                                         


Q ss_pred             EEEEccCcceeeeeccCCCCcceeEEEEcCCC-ceEEEeecCCcEEEEecCCceeeeeeCCCeecCCCCCCCCceeeEEE
Q 001415          944 AIFETTKLECVKQWVPRESSAPITHATFSCDS-QLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIA 1022 (1082)
Q Consensus       944 ~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~dg-~~l~t~s~dg~v~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~~~ 1022 (1082)
                             ...++.+.  +|...|.++.|++.+ ++|++++.|+.|.+|+.++++.+..+.      .+  +.  +...+.
T Consensus       243 -------ssP~k~~~--~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p------~~--~n--W~fdv~  303 (1049)
T KOG0307|consen  243 -------SSPLKILE--GHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELP------AQ--GN--WCFDVQ  303 (1049)
T ss_pred             -------CCchhhhc--ccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecC------CC--Cc--ceeeee
Confidence                   11222232  789999999999966 899999999999999999999998876      11  23  445899


Q ss_pred             EeCCCCCeEEEEecCCcEEEEccCCCC
Q 001415         1023 AHPQEPNEFALGLSDGGVHVFEPLESE 1049 (1082)
Q Consensus      1023 ~~~~d~~~l~s~~~dg~v~vW~~~~~~ 1049 (1082)
                      |+|.+...++.++-||.|-|+.+....
T Consensus       304 w~pr~P~~~A~asfdgkI~I~sl~~~~  330 (1049)
T KOG0307|consen  304 WCPRNPSVMAAASFDGKISIYSLQGTD  330 (1049)
T ss_pred             ecCCCcchhhhheeccceeeeeeecCC
Confidence            999888899999999999999998877

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=99.74  E-value=3.3e-16  Score=152.46  Aligned_cols=396  Identities=14%  Similarity=0.166  Sum_probs=235.6

Q ss_pred             EEEEecCCCeEEEEeCCCeEEEEEccCCceeeEEEEeeccccCeeEEEecCCCCceEEEEEeCCCcEEEEEccCCceeEE
Q 001415          425 RVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYI  504 (1082)
Q Consensus       425 ~l~~spdg~~las~~~d~~v~iwd~~~~~~~~~~~~~~~h~~~V~~l~fs~dg~~~~l~s~s~d~~i~vwd~~~~~~~~~  504 (1082)
                      -++|||+|+|+|+++.- .+.|-|..+-+..+    +-.--+.|..+.|..|.-. .|.....|+.|.+|++...+-...
T Consensus        13 ~c~fSp~g~yiAs~~~y-rlviRd~~tlq~~q----lf~cldki~yieW~ads~~-ilC~~yk~~~vqvwsl~Qpew~ck   86 (447)
T KOG4497|consen   13 FCSFSPCGNYIASLSRY-RLVIRDSETLQLHQ----LFLCLDKIVYIEWKADSCH-ILCVAYKDPKVQVWSLVQPEWYCK   86 (447)
T ss_pred             ceeECCCCCeeeeeeee-EEEEeccchhhHHH----HHHHHHHhhheeeecccee-eeeeeeccceEEEEEeecceeEEE
Confidence            46899999999999765 67788877755433    2222457889999988875 566778899999999999988888


Q ss_pred             eecCCcCeEEEeeeecCCceEEEEecCCCcEEEEecCCCCceeeecCCCCceEEEEEccCCCeeeecccccceeEEEecC
Q 001415          505 FEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDT  584 (1082)
Q Consensus       505 ~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~i~~~~~~~  584 (1082)
                      +.....++.+++|+|++. +.|.+...|-.|.+|.+.+..... +.-....+..++|.+||                   
T Consensus        87 Ideg~agls~~~WSPdgr-hiL~tseF~lriTVWSL~t~~~~~-~~~pK~~~kg~~f~~dg-------------------  145 (447)
T KOG4497|consen   87 IDEGQAGLSSISWSPDGR-HILLTSEFDLRITVWSLNTQKGYL-LPHPKTNVKGYAFHPDG-------------------  145 (447)
T ss_pred             eccCCCcceeeeECCCcc-eEeeeecceeEEEEEEeccceeEE-ecccccCceeEEECCCC-------------------
Confidence            888888999999987653 577777889999999998754332 22222333445555554                   


Q ss_pred             CCCEEEEEeCCCe---EEEEECCCcceEEEEecCCCCCCcCeEEEcCCCCEEEEEEC--CCcEEEEEecCCccceeeccc
Q 001415          585 TKNRFLAAGDDFS---IKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTN--DNGIKILATSDGIRLLRTFEN  659 (1082)
Q Consensus       585 ~~~~l~~~~~dg~---i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~--dg~i~iwd~~~~~~~~~~~~~  659 (1082)
                        ++.+.++....   +.+.....-..+..+....-  ..+.+.|+|||..|++-..  +-.|..|....|..       
T Consensus       146 --~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~--DltgieWsPdg~~laVwd~~Leykv~aYe~~lG~k-------  214 (447)
T KOG4497|consen  146 --QFCAILSRRDCKDYVQISSCKAWILLKEFKLDTI--DLTGIEWSPDGNWLAVWDNVLEYKVYAYERGLGLK-------  214 (447)
T ss_pred             --ceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcc--cccCceECCCCcEEEEecchhhheeeeeeecccee-------
Confidence              45555553211   11211122233444443332  4678999999998876432  12222222222200       


Q ss_pred             ccccccccccccCCCCccccCCCCceeeeccCCceeEEEecccCCCCccccccccCcccccceeEEEEccCCceeeecc-
Q 001415          660 LAYDASRTSENSKNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALA-  738 (1082)
Q Consensus       660 ~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-  738 (1082)
                              .+++       +|.++.+++|+.|+.+++.+-                         +.|.+-++++--++ 
T Consensus       215 --------~v~w-------sP~~qflavGsyD~~lrvlnh-------------------------~tWk~f~eflhl~s~  254 (447)
T KOG4497|consen  215 --------FVEW-------SPCNQFLAVGSYDQMLRVLNH-------------------------FTWKPFGEFLHLCSY  254 (447)
T ss_pred             --------EEEe-------ccccceEEeeccchhhhhhce-------------------------eeeeehhhhccchhc
Confidence                    2223       566666666666665555331                         23333333221111 


Q ss_pred             cCCeEEEeeccccccCCCCCcccccCccccCCCCcceeecccCCCCCCCCccEEEeecCCCeEEEeeCCeEEEEecC---
Q 001415          739 SNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMM---  815 (1082)
Q Consensus       739 ~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~l~~~sdg~i~iwd~~---  815 (1082)
                      .|....+                      ...++-..         ..-...++.|.|..-- +.-....=.+|...   
T Consensus       255 ~dp~~~~----------------------~~ke~~~~---------~ql~~~cLsf~p~~~~-a~~~~~se~~YE~~~~p  302 (447)
T KOG4497|consen  255 HDPTLHL----------------------LEKETFSI---------VQLLHHCLSFTPTDLE-AHIWEESETIYEQQMTP  302 (447)
T ss_pred             cCchhhh----------------------hhhhhcch---------hhhcccccccCCCccc-cCccccchhhhhhhhcc
Confidence            1111000                      00000000         1112335555543210 00000000112211   


Q ss_pred             ----CCeeEEEECCCCCCeeEEEEecCCCcEEEEEeCC--CcEEEEecccceeeeeecccccCEEEEEEeCCCCEEEEEe
Q 001415          816 ----TFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDD--SSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSG  889 (1082)
Q Consensus       816 ----~~~~~~~~~~~~~~v~~l~~sp~~~~~lasg~~d--g~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s  889 (1082)
                          ..++...+......+.-++|++ |..++|+-.+.  +.+.+||++..++...+. ...+|....|.|....|+.+.
T Consensus       303 v~~~~lkp~tD~pnPk~g~g~lafs~-Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLi-Qk~piraf~WdP~~prL~vct  380 (447)
T KOG4497|consen  303 VKVHKLKPPTDFPNPKCGAGKLAFSC-DSTYAATRNDKYPNALWLWDLQNLKLHAVLI-QKHPIRAFEWDPGRPRLVVCT  380 (447)
T ss_pred             eeeecccCCCCCCCcccccceeeecC-CceEEeeecCCCCceEEEEechhhhhhhhhh-hccceeEEEeCCCCceEEEEc
Confidence                1122223334455688899999 89999886543  589999999877665554 567899999999999999988


Q ss_pred             CCCcEEEEEcCCcccccceeeeccCCCCCCCCCCcEEEEcCCCcEEEEEecC
Q 001415          890 ADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHET  941 (1082)
Q Consensus       890 ~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~~d~  941 (1082)
                      ....+.+|....     .+++..+...    -.|..+.|.-+|..++..+..
T Consensus       381 g~srLY~W~psg-----~~~V~vP~~G----F~i~~l~W~~~g~~i~l~~kD  423 (447)
T KOG4497|consen  381 GKSRLYFWAPSG-----PRVVGVPKKG----FNIQKLQWLQPGEFIVLCGKD  423 (447)
T ss_pred             CCceEEEEcCCC-----ceEEecCCCC----ceeeeEEecCCCcEEEEEcCC
Confidence            888899999877     3344443322    468999999999998875433

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.74  E-value=1.9e-15  Score=141.12  Aligned_cols=288  Identities=11%  Similarity=0.123  Sum_probs=195.4

Q ss_pred             cceeEEEEccCCceeeecccCCeEEEeeccccccCCCCCcccccCccccCCCCcceeecccCCCCCCCCccEEEeecCCC
Q 001415          720 TKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDS  799 (1082)
Q Consensus       720 ~~i~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~  799 (1082)
                      ..|.+-+++|.+++++++..+|.|.+..+..-.....             ...|+...  +..++|..+++.++|.  ..
T Consensus        11 ~tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa-------------~~~gk~~i--v~eqahdgpiy~~~f~--d~   73 (325)
T KOG0649|consen   11 NTVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSA-------------EPPGKLKI--VPEQAHDGPIYYLAFH--DD   73 (325)
T ss_pred             HHHHHHhhCCcceEEEEecCCCeEEEEEehhhhcccc-------------CCCCCcce--eeccccCCCeeeeeee--hh
Confidence            3466678999999999999999999998764332111             01111111  1224599999999997  56


Q ss_pred             eEEEeeCCeEEEEecCCCee------EEEEC-------CCCCCeeEEEEecCCCcEEEEEeCCCcEEEEecccceeeeee
Q 001415          800 YVMSASGGKISLFNMMTFKT------MATFM-------PPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKL  866 (1082)
Q Consensus       800 ~l~~~sdg~i~iwd~~~~~~------~~~~~-------~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l  866 (1082)
                      +|++++||.|+-|.......      +....       ..-.+|+++...|..+.++. ++.|+.++-||+++|+...++
T Consensus        74 ~Lls~gdG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~-AgGD~~~y~~dlE~G~i~r~~  152 (325)
T KOG0649|consen   74 FLLSGGDGLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILF-AGGDGVIYQVDLEDGRIQREY  152 (325)
T ss_pred             heeeccCceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEE-ecCCeEEEEEEecCCEEEEEE
Confidence            88899999999887653211      11111       12245899999995555555 457999999999999999999


Q ss_pred             cccccCEEEEEEeCCCCEEEEEeCCCcEEEEEcCCcccccceeeeccCCCCCCC--CCCcEEEEcCCCcEEEEEecCeEE
Q 001415          867 KGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTA--QSDTRVQFHQDQIHFLVVHETQLA  944 (1082)
Q Consensus       867 ~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~--~~v~~~~fspdg~~l~~~~d~~i~  944 (1082)
                      +||++.|.++.--.....+.||+.||++|+||.++++...  .+..........  .+---.+..-+..+|+++....+.
T Consensus       153 rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~--~ie~yk~~~~lRp~~g~wigala~~edWlvCGgGp~ls  230 (325)
T KOG0649|consen  153 RGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVS--MIEPYKNPNLLRPDWGKWIGALAVNEDWLVCGGGPKLS  230 (325)
T ss_pred             cCCcceeeeeeecccCcceeecCCCccEEEEeccccceeE--EeccccChhhcCcccCceeEEEeccCceEEecCCCcee
Confidence            9999999999985566678999999999999999976532  222222111100  011114455567799998888999


Q ss_pred             EEEccCcceeeeeccCCCCcceeEEEEcCCCceEEEeecCCcEEEEecCCceeeeeeCCCeecCCCCCCCCceeeEEEEe
Q 001415          945 IFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAH 1024 (1082)
Q Consensus       945 iwd~~~~~~~~~~~~~~h~~~i~~l~~s~dg~~l~t~s~dg~v~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~~~~~ 1024 (1082)
                      +|+++..++...+..++   ++..+.|-  .+.++++++.+.|.-|.+. |.+...+.      .+|    ...++..++
T Consensus       231 lwhLrsse~t~vfpipa---~v~~v~F~--~d~vl~~G~g~~v~~~~l~-Gvl~a~ip------~~s----~~c~s~s~~  294 (325)
T KOG0649|consen  231 LWHLRSSESTCVFPIPA---RVHLVDFV--DDCVLIGGEGNHVQSYTLN-GVLQANIP------VES----TACYSASWQ  294 (325)
T ss_pred             EEeccCCCceEEEeccc---ceeEeeee--cceEEEeccccceeeeeec-cEEEEecc------CCc----cceeeeccc
Confidence            99999999999988744   67777884  4577888888889999875 44443333      121    112233343


Q ss_pred             CCCCCeEEEEecCCcEEEE
Q 001415         1025 PQEPNEFALGLSDGGVHVF 1043 (1082)
Q Consensus      1025 ~~d~~~l~s~~~dg~v~vW 1043 (1082)
                      .+--+.+-.++..+.+.+.
T Consensus       295 ~~p~k~~s~ag~s~~~~i~  313 (325)
T KOG0649|consen  295 TSPIKFISIAGFSNKLHIL  313 (325)
T ss_pred             CCceEEEEecccceeeeee
Confidence            3224556666777777665

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=99.74  E-value=2.3e-15  Score=162.70  Aligned_cols=573  Identities=11%  Similarity=0.089  Sum_probs=326.2

Q ss_pred             CCCCcceeeecC-CCCCceEEEEecC-----------CCeEEEEEcCCCcEEEEEccccceeeeeceeeeccCCCCcccc
Q 001415          345 EDLPKTVTRTLN-QGSSPMSMDFHPV-----------QQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQ  412 (1082)
Q Consensus       345 ~~~~~~~~~~~~-h~~~v~~~~~spd-----------g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~  412 (1082)
                      |...-+.++.+. |...|+.+.|+|-           .+.++|++...|.|.+||...+..+..                
T Consensus        41 Ds~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~~----------------  104 (1062)
T KOG1912|consen   41 DSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVINW----------------  104 (1062)
T ss_pred             ehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhhhh----------------
Confidence            333445555555 8899999999763           345788999999999999988776653                


Q ss_pred             cccccCCCCceeEEEEec---CC-CeEEEEeCCCeEEEEEccCCceeeEEEEeeccccCeeEEEecCCCCceEEEEEeCC
Q 001415          413 AALVKDPGVSVNRVIWSP---DG-SLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDD  488 (1082)
Q Consensus       413 ~~~~~~h~~~V~~l~~sp---dg-~~las~~~d~~v~iwd~~~~~~~~~~~~~~~h~~~V~~l~fs~dg~~~~l~s~s~d  488 (1082)
                         +..|..+|..++|-|   +. ..|++-....++.+||..+|+.+.   ....-.....|+.+.|-+...+.+. +..
T Consensus       105 ---l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~W---k~~ys~~iLs~f~~DPfd~rh~~~l-~s~  177 (1062)
T KOG1912|consen  105 ---LSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFW---KYDYSHEILSCFRVDPFDSRHFCVL-GSK  177 (1062)
T ss_pred             ---hcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceee---ccccCCcceeeeeeCCCCcceEEEE-ccC
Confidence               778899999999987   44 456666677899999999998765   3333344667788888665523333 344


Q ss_pred             CcEEEEEcc-------CCceeEEeecCCc----------------C-------eEEE--eeeecCCceEEEEecCCCcEE
Q 001415          489 KTIKVWDAT-------NGAKQYIFEGHEA----------------P-------VYSV--CPHHKENIQFIFSTALDGKIK  536 (1082)
Q Consensus       489 ~~i~vwd~~-------~~~~~~~~~~h~~----------------~-------v~~~--~~~~~~~~~~l~s~~~dg~i~  536 (1082)
                      |.+-+-+.-       .|+..+.-..|..                .       ..+.  +|+|.-  +-++.......+.
T Consensus       178 g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~--rn~lfi~~prell  255 (1062)
T KOG1912|consen  178 GFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHW--RNILFITFPRELL  255 (1062)
T ss_pred             ceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhh--hceEEEEeccceE
Confidence            555554432       1233332222222                0       0111  233333  2344445567788


Q ss_pred             EEecCCCCceeeecCCCCceEEEEEccCCCeeeecccccceeEEEecCCCCEEEEEeCCCeEEEEECCC-----------
Q 001415          537 AWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDS-----------  605 (1082)
Q Consensus       537 iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~-----------  605 (1082)
                      ++|++-..+......+.+.+.-+.+-|+++                   ...+++.-.||.+.+|-.+.           
T Consensus       256 v~dle~~~~l~vvpier~~akfv~vlP~~~-------------------rd~LfclH~nG~ltirvrk~~~~~f~~~~~~  316 (1062)
T KOG1912|consen  256 VFDLEYECCLAVVPIERGGAKFVDVLPDPR-------------------RDALFCLHSNGRLTIRVRKEEPTEFKKPNAS  316 (1062)
T ss_pred             EEcchhhceeEEEEeccCCcceeEeccCCC-------------------cceEEEEecCCeEEEEEeeccCccccccchh
Confidence            999887777766666666666666777665                   23588888899999996543           


Q ss_pred             -----cceEEEEecCCCCCCcCeEEEcCC-CCEEEEEECCCcEEEEEecCCccceeecccccccccccccccC-------
Q 001415          606 -----VQLLTSIDADGGLPASPRIRFNKD-GCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSK-------  672 (1082)
Q Consensus       606 -----~~~~~~~~~~~~~~~i~~~~~s~d-g~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-------  672 (1082)
                           ++....+....... +...+..|. ...++.--.+|.+.+|.+.++........+......  ...|.       
T Consensus       317 l~~dl~~Q~~~vr~m~~~r-p~~~~~cPs~~sa~avl~s~g~~~~w~l~~~ri~~~~~s~~iel~~--pf~f~~~~~~v~  393 (1062)
T KOG1912|consen  317 LSMDLGEQVHVVRPMEEFR-PVIGASCPSTPSALAVLYSSGDSTFWQLSNGRIHLDYRSSSIELVL--PFDFNLSTKLVG  393 (1062)
T ss_pred             hccccccceEEEeechhcc-cceeecCCCChhhhhhhhhcchhHHHhhhcCCcCcccccccccccc--cccccCceeehh
Confidence                 22222222212211 223334443 445555566788888888765211110000000000  00000       


Q ss_pred             --------------------------CC-CccccCCC-------CceeeeccCCceeEEEecccCCCCccccccccCccc
Q 001415          673 --------------------------NG-DVRSLADV-------KPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLR  718 (1082)
Q Consensus       673 --------------------------~~-~~~~s~~~-------~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~  718 (1082)
                                                .. .....|.+       ..++.|...|+|.++|+.+.........       |
T Consensus       394 k~~l~~LS~dg~h~sGs~~~~~~p~p~~t~~~~~p~~n~~~~~~pLvAvGT~sGTV~vvdvst~~v~~~fsv-------h  466 (1062)
T KOG1912|consen  394 KTSLISLSDDGSHSSGSTCVRMRPMPELTKVENDPGGNTPAGTVPLVAVGTNSGTVDVVDVSTNAVAASFSV-------H  466 (1062)
T ss_pred             hccccchhhcCCCCCCceeeecccCcccceeecCCCCCccceeeeeEEeecCCceEEEEEecchhhhhhhcc-------c
Confidence                                      00 00011122       2457899999999999987644433332       8


Q ss_pred             ccceeEEEEccCCceeeecccCCeEEEeeccccccCCCCCcccccCccccCCCCcceeecccCCCCCCCCccEEEeecCC
Q 001415          719 ATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKND  798 (1082)
Q Consensus       719 ~~~i~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg  798 (1082)
                      ...|.++.|..+...+-.+... ..            +........+.+-+..+|.-....-.....+.+|+.+..|..|
T Consensus       467 t~~VkgleW~g~sslvSfsys~-~n------------~~sg~vrN~l~vtdLrtGlsk~fR~l~~~despI~~irvS~~~  533 (1062)
T KOG1912|consen  467 TSLVKGLEWLGNSSLVSFSYSH-VN------------SASGGVRNDLVVTDLRTGLSKRFRGLQKPDESPIRAIRVSSSG  533 (1062)
T ss_pred             ccceeeeeeccceeEEEeeecc-cc------------ccccceeeeEEEEEcccccccccccCCCCCcCcceeeeecccC
Confidence            8899999998877644333221 00            0000001123455677776554332233468899999999999


Q ss_pred             CeEEEee-CCeEEEEecCCCeeEEEECCCCCCeeEEEEe-cCCCc----------------EEEEEeCCCcEEEEeccc-
Q 001415          799 SYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFH-PQDNN----------------IIAIGMDDSSIQIYNVRV-  859 (1082)
Q Consensus       799 ~~l~~~s-dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s-p~~~~----------------~lasg~~dg~v~iwd~~~-  859 (1082)
                      +|++..- +.-+.+||+++..+++.....-..++.+.|+ | .-.                ..+..+  +..+++.+.. 
T Consensus       534 ~yLai~Fr~~plEiwd~kt~~~lr~mS~a~P~it~leWsl~-~~~si~qk~ls~q~sms~n~vv~ds--~es~~~~~~~~  610 (1062)
T KOG1912|consen  534 RYLAILFRREPLEIWDLKTLRMLRLMSLALPLITVLEWSLP-KHPSIKQKELSKQSSMSENLVVLDS--VESRIYHITLS  610 (1062)
T ss_pred             ceEEEEecccchHHHhhccchHHHHHhhcCCcEEEEeeccc-CCCCcccccchhhhhhhhceeeecc--ccchheehhhh
Confidence            9999997 5679999998877776655444558889998 3 111                223322  2233333221 


Q ss_pred             ------cee-eeeecccccCEEEEEEeCCCCEEEEEeCCCcEEEEEcCCcccccceeeeccCCCCCCCCCCcEEEEcCCC
Q 001415          860 ------DEV-KSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQ  932 (1082)
Q Consensus       860 ------~~~-~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg  932 (1082)
                            +.. ....+...-.+..|+|  .+..|+.|+.+|.+++||+.....-  .....+. +   ......+.+-|..
T Consensus       611 a~~~sdgsq~~~a~esfafal~~mAw--k~d~lv~GD~~GNl~~WDlg~R~SR--g~~d~p~-~---ra~~l~~~~ipG~  682 (1062)
T KOG1912|consen  611 ALVVSDGSQVNTAWESFAFALCAMAW--KDDILVVGDVEGNLVVWDLGRRQSR--GVRDSPD-P---RAHSLTFPQIPGD  682 (1062)
T ss_pred             hhhhccccchhhHHHHHHHHHHhhhc--cCCeeEeecccCceeEEeccccccc--CccCCCC-c---hhhheecccCCCC
Confidence                  111 0111111122334666  4678999999999999998763211  0111111 0   0122333444543


Q ss_pred             cEEEEEecCeEEEEEccCcceeeeeccCCCCcceeEEEEcCCCceEEEeecCCcEEEEecCCcee
Q 001415          933 IHFLVVHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKL  997 (1082)
Q Consensus       933 ~~l~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~dg~~l~t~s~dg~v~vwd~~~~~~  997 (1082)
                      ..+++-....+-+||.+....+..+.....+..+..+.+......++  ..|.++++-.+.....
T Consensus       683 ~~~lvl~~d~~~lwdtk~~~lV~siag~dssfrlldvdlc~~~~~~l--~~d~~~Rf~~m~mks~  745 (1062)
T KOG1912|consen  683 HTTLVLELDWLPLWDTKADTLVLSIAGMDSSFRLLDVDLCEKSPLVL--PNDNKERFRVMPMKSP  745 (1062)
T ss_pred             ceEEEEecCcceecccccceeeeeeccCCcceEEEEEEecccCceec--CCCCceeEEeccccCC
Confidence            34444445568899988888777663222234455555544433333  2344777766655443

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.74  E-value=1.7e-16  Score=155.85  Aligned_cols=287  Identities=16%  Similarity=0.196  Sum_probs=195.4

Q ss_pred             CeEEEEeCCCeEEEEEccCCceeeEEEEeeccccCeeEEEecCC-CCceEEEEEeCCCcEEEEEccCCceeEE--eecCC
Q 001415          433 SLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHP-NKQLCVITCGDDKTIKVWDATNGAKQYI--FEGHE  509 (1082)
Q Consensus       433 ~~las~~~d~~v~iwd~~~~~~~~~~~~~~~h~~~V~~l~fs~d-g~~~~l~s~s~d~~i~vwd~~~~~~~~~--~~~h~  509 (1082)
                      ..+|++...|.|++||..+++.+.   .+++|...++.++|..+ +.. .+.+|+.||+|++||+++......  +..+.
T Consensus        41 ~~vav~lSngsv~lyd~~tg~~l~---~fk~~~~~~N~vrf~~~ds~h-~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~  116 (376)
T KOG1188|consen   41 TAVAVSLSNGSVRLYDKGTGQLLE---EFKGPPATTNGVRFISCDSPH-GVISCSSDGTVRLWDIRSQAESARISWTQQS  116 (376)
T ss_pred             eeEEEEecCCeEEEEeccchhhhh---eecCCCCcccceEEecCCCCC-eeEEeccCCeEEEEEeecchhhhheeccCCC
Confidence            568899999999999999988777   78999999999999875 333 799999999999999998765544  34454


Q ss_pred             -cCeEEEeeeecCCceEEEEecC----CCcEEEEecCCCCcee--eecCCCCceEEEEEccCCCeeeecccccceeEEEe
Q 001415          510 -APVYSVCPHHKENIQFIFSTAL----DGKIKAWLYDNLGSRV--DYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQF  582 (1082)
Q Consensus       510 -~~v~~~~~~~~~~~~~l~s~~~----dg~i~iwd~~~~~~~~--~~~~~~~~v~~~~~s~d~~~~~~~~~~~~i~~~~~  582 (1082)
                       .+..+++  ..-+++.+++|..    +-.|.+||++...+..  ....|...|+.+.|.|...                
T Consensus       117 ~~~f~~ld--~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~p----------------  178 (376)
T KOG1188|consen  117 GTPFICLD--LNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDP----------------  178 (376)
T ss_pred             CCcceEee--ccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCC----------------
Confidence             3444444  3334467777753    5679999999876632  3455666677766666543                


Q ss_pred             cCCCCEEEEEeCCCeEEEEECCCcc----eEEEEecCCCCCCcCeEEEcCCC-CEEEEEECCCcEEEEEecCCccceeec
Q 001415          583 DTTKNRFLAAGDDFSIKFWDMDSVQ----LLTSIDADGGLPASPRIRFNKDG-CLLAVSTNDNGIKILATSDGIRLLRTF  657 (1082)
Q Consensus       583 ~~~~~~l~~~~~dg~i~iwd~~~~~----~~~~~~~~~~~~~i~~~~~s~dg-~~l~~~~~dg~i~iwd~~~~~~~~~~~  657 (1082)
                          +.|++|+.||.|.++|+....    ++..+.   ....|.++.|..++ +.|.+-+..++..+|++..+......-
T Consensus       179 ----nlLlSGSvDGLvnlfD~~~d~EeDaL~~viN---~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~  251 (376)
T KOG1188|consen  179 ----NLLLSGSVDGLVNLFDTKKDNEEDALLHVIN---HGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLE  251 (376)
T ss_pred             ----CeEEeecccceEEeeecCCCcchhhHHHhhc---ccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhccc
Confidence                478999999999999987542    222332   22358889999877 458888999999999999885322221


Q ss_pred             cccc-cccccccccc-CCCCccccCCCCceeeecc-CCceeEEEecccCCCCccccccccCcccccceeEEEEccCCcee
Q 001415          658 ENLA-YDASRTSENS-KNGDVRSLADVKPRITEES-NDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAI  734 (1082)
Q Consensus       658 ~~~~-~~~~~~~~~~-~~~~~~~s~~~~~l~~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l  734 (1082)
                      .... ....+...+. .-.+.....++...+.++. -+...++-+.................+|...|+++.|...+..+
T Consensus       252 ~~~~~~~d~r~~~~~dY~I~~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~~~l  331 (376)
T KOG1188|consen  252 NPDVSADDLRKEDNCDYVINEHSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVKNDVL  331 (376)
T ss_pred             CccchhhhHHhhhhhhheeecccCCCcceEEEeccccCceeEEEeeecccccccCccccccCCcHHHHHHHhhhccccee
Confidence            1100 0011000000 0011111233444444444 67777777765444444445555555688889999999999999


Q ss_pred             eecccCCeEEEeec
Q 001415          735 LALASNAIHLLWKW  748 (1082)
Q Consensus       735 ~~~~~d~~i~iw~~  748 (1082)
                      .+++.||.+.+|..
T Consensus       332 ~TGGEDG~l~~Wk~  345 (376)
T KOG1188|consen  332 YTGGEDGLLQAWKV  345 (376)
T ss_pred             eccCCCceEEEEec
Confidence            99999999999974

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.73  E-value=3.1e-15  Score=164.66  Aligned_cols=273  Identities=10%  Similarity=0.132  Sum_probs=174.4

Q ss_pred             eeeccCCceeEEEecccCCCCccccccccCcccccceeEEEEccCCceeeecc-cCCeEEEeeccccccCCCCCcccccC
Q 001415          686 ITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALA-SNAIHLLWKWQRTERNSSGKATASVA  764 (1082)
Q Consensus       686 ~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~d~~i~iw~~~~~~~~~~~~~~~~~~  764 (1082)
                      ++...++.|.+|++...........+.     .......++++|+++.|++++ .++.+.+|++..              
T Consensus         6 ~~~~~~~~I~~~~~~~~g~l~~~~~~~-----~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~--------------   66 (330)
T PRK11028          6 IASPESQQIHVWNLNHEGALTLLQVVD-----VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIAD--------------   66 (330)
T ss_pred             EEcCCCCCEEEEEECCCCceeeeeEEe-----cCCCCccEEECCCCCEEEEEECCCCcEEEEEECC--------------
Confidence            344678999999996422222222221     234567889999999887664 468888887641              


Q ss_pred             ccccCCCCcceeec-ccCCCCCCCCccEEEeecCCCeEEEee--CCeEEEEecCC-Ce---eEEEECCCCCCeeEEEEec
Q 001415          765 PQLWQPPSGIMMTN-DVTDSNPEEAVPCFALSKNDSYVMSAS--GGKISLFNMMT-FK---TMATFMPPPPAATFLAFHP  837 (1082)
Q Consensus       765 ~~~~~~~~~~~~~~-~~~~~~~~~~i~~l~~s~dg~~l~~~s--dg~i~iwd~~~-~~---~~~~~~~~~~~v~~l~~sp  837 (1082)
                             .+..... ...   .......++|+|+|+++++++  ++.|.+|++.+ +.   ....+. +......++++|
T Consensus        67 -------~g~l~~~~~~~---~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~p  135 (330)
T PRK11028         67 -------DGALTFAAESP---LPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIE-GLEGCHSANIDP  135 (330)
T ss_pred             -------CCceEEeeeec---CCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeecc-CCCcccEeEeCC
Confidence                   1111000 000   123456899999999998886  68899999974 22   222232 233467789999


Q ss_pred             CCCcEE-EEEeCCCcEEEEecccceeee-------eecccccCEEEEEEeCCCCEEEEEeC-CCcEEEEEcCC--ccccc
Q 001415          838 QDNNII-AIGMDDSSIQIYNVRVDEVKS-------KLKGHSKRITGLAFSHALNVLVSSGA-DSQLCVWSSDG--WEKQK  906 (1082)
Q Consensus       838 ~~~~~l-asg~~dg~v~iwd~~~~~~~~-------~l~~h~~~V~~l~~s~d~~~l~s~s~-Dg~i~vwd~~~--~~~~~  906 (1082)
                       +++++ ++...++.|.+||+.+...+.       .... ......++|+|||++++++.. +++|.+|+++.  ++...
T Consensus       136 -~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~-g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~  213 (330)
T PRK11028        136 -DNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVE-GAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIEC  213 (330)
T ss_pred             -CCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCC-CCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEE
Confidence             66666 455567999999997632221       1111 234568999999999988876 89999999984  22211


Q ss_pred             ceeeeccCCCCCCCCCCcEEEEcCCCcEEEEE--ecCeEEEEEccCcce----eeeeccCCCCcceeEEEEcCCCceEEE
Q 001415          907 NRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV--HETQLAIFETTKLEC----VKQWVPRESSAPITHATFSCDSQLVYA  980 (1082)
Q Consensus       907 ~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~--~d~~i~iwd~~~~~~----~~~~~~~~h~~~i~~l~~s~dg~~l~t  980 (1082)
                      ...+...............+.|+|||++++++  .++.|.+|+++....    +.....   ......++|+|||++|++
T Consensus       214 ~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~---~~~p~~~~~~~dg~~l~v  290 (330)
T PRK11028        214 VQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPT---ETQPRGFNIDHSGKYLIA  290 (330)
T ss_pred             EEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEec---cccCCceEECCCCCEEEE
Confidence            11111111110111223468999999999986  457899999865432    222221   124567899999999998


Q ss_pred             eec-CCcEEEEecC
Q 001415          981 CFL-DATVCVFSAA  993 (1082)
Q Consensus       981 ~s~-dg~v~vwd~~  993 (1082)
                      ++. +++|.+|+++
T Consensus       291 a~~~~~~v~v~~~~  304 (330)
T PRK11028        291 AGQKSHHISVYEID  304 (330)
T ss_pred             EEccCCcEEEEEEc
Confidence            885 8999999874

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.73  E-value=5.9e-17  Score=169.64  Aligned_cols=229  Identities=16%  Similarity=0.285  Sum_probs=179.6

Q ss_pred             cccCCCCceeEEEEecCCCeEEEEeCCCeEEEEEcc-----CCceeeEEEEeeccccCeeEEEecCCCCceEEEEEeCCC
Q 001415          415 LVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYH-----GGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDK  489 (1082)
Q Consensus       415 ~~~~h~~~V~~l~~spdg~~las~~~d~~v~iwd~~-----~~~~~~~~~~~~~h~~~V~~l~fs~dg~~~~l~s~s~d~  489 (1082)
                      .+..|.+.|+.++|.|-...|++++.||++.+|+++     ....+.++.++.+|.++|.|++.++++.  .+++|+.||
T Consensus       289 tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~--~~ysgg~Dg  366 (577)
T KOG0642|consen  289 TLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGE--HCYSGGIDG  366 (577)
T ss_pred             eeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCce--EEEeeccCc
Confidence            477899999999999999999999999999999993     3345677889999999999999999999  799999999


Q ss_pred             cEEEEEccC------C----ceeEEeecCCcCeEEEeeeecCCceEEEEecCCCcEEEEecCCCCceeeecCCCC--ceE
Q 001415          490 TIKVWDATN------G----AKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGR--WCT  557 (1082)
Q Consensus       490 ~i~vwd~~~------~----~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~--~v~  557 (1082)
                      +|+.|++-.      .    .....+.||.+.|+.++++...  ..|++++.||+++.|+...... ..+.....  ...
T Consensus       367 ~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~--~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~Pl  443 (577)
T KOG0642|consen  367 TIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTK--DRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYPL  443 (577)
T ss_pred             eeeeeccCCCCCcccccCcchhccceeccccceeeeeecccc--cceeeecCCceEEeeccCCcCc-cccCCccccCCcc
Confidence            999995542      1    2345778999999999998777  4799999999999998876555 22222111  111


Q ss_pred             EEEEccCC--------C---------------eeeec------ccccceeEEEecCCCCEEEEEeCCCeEEEEECCCcce
Q 001415          558 TMAYSADG--------T---------------RTYQG------FRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQL  608 (1082)
Q Consensus       558 ~~~~s~d~--------~---------------~~~~~------~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~  608 (1082)
                      ++.+....        +               .++..      .....+..+..+|.....+++.+|+.|+++|..++++
T Consensus       444 svd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~  523 (577)
T KOG0642|consen  444 SVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKI  523 (577)
T ss_pred             eEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceeccccccccc
Confidence            22211110        0               11111      1123456678889899999999999999999999999


Q ss_pred             EEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEecCC
Q 001415          609 LTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG  650 (1082)
Q Consensus       609 ~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~iwd~~~~  650 (1082)
                      +.....|..  .++++++.|+|-+|++++.|+.+++|.+...
T Consensus       524 l~s~~a~~~--svtslai~~ng~~l~s~s~d~sv~l~kld~k  563 (577)
T KOG0642|consen  524 LHSMVAHKD--SVTSLAIDPNGPYLMSGSHDGSVRLWKLDVK  563 (577)
T ss_pred             chheeeccc--eecceeecCCCceEEeecCCceeehhhccch
Confidence            988876654  7899999999999999999999999987544

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.73  E-value=4.5e-16  Score=161.55  Aligned_cols=224  Identities=15%  Similarity=0.201  Sum_probs=160.3

Q ss_pred             cccCCCCceeEEEEecCCCeEEEEeCCCeEEEEEccCCceeeEEEEeeccccCeeEEEecCCCCceEEEEEeCCCcEEEE
Q 001415          415 LVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVW  494 (1082)
Q Consensus       415 ~~~~h~~~V~~l~~spdg~~las~~~d~~v~iwd~~~~~~~~~~~~~~~h~~~V~~l~fs~dg~~~~l~s~s~d~~i~vw  494 (1082)
                      .+.||++.|.|++|+.||.+||+|+.|-.+.|||.-..+.+..+  -.||.+.|.++.|-|.....++++|..|..|+++
T Consensus        45 eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI--~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lf  122 (758)
T KOG1310|consen   45 ELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSI--STGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLF  122 (758)
T ss_pred             hhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeee--ecccccceeEEeeeccCCCeEEEeccCcceEEEE
Confidence            48899999999999999999999999999999999977766543  3599999999999997665589999999999999


Q ss_pred             EccC----------CceeEEeecCCcCeEEEeeeecCCceEEEEecCCCcEEEEecCCCCceeeecCCCCceEEEEEccC
Q 001415          495 DATN----------GAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSAD  564 (1082)
Q Consensus       495 d~~~----------~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d  564 (1082)
                      |+..          ....+.+..|...|..++..+... +.+.+++.||+|+-+|++.......-.  .-.+..+.+.++
T Consensus       123 dl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~P-htfwsasEDGtirQyDiREph~c~p~~--~~~~~l~ny~~~  199 (758)
T KOG1310|consen  123 DLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGP-HTFWSASEDGTIRQYDIREPHVCNPDE--DCPSILVNYNPQ  199 (758)
T ss_pred             ecccccccccccCccchhhhhhhhhhhhhheecCCCCC-ceEEEecCCcceeeecccCCccCCccc--cccHHHHHhchh
Confidence            9985          233455677999999888765443 689999999999999998633221000  001111111221


Q ss_pred             CCeeeecccccceeEEEecCCCC-EEEEEeCCCeEEEEECCC--------cc----------eEEEEec-CC----C---
Q 001415          565 GTRTYQGFRKRSLGVVQFDTTKN-RFLAAGDDFSIKFWDMDS--------VQ----------LLTSIDA-DG----G---  617 (1082)
Q Consensus       565 ~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~iwd~~~--------~~----------~~~~~~~-~~----~---  617 (1082)
                      -         -...++.++|... +|++|+.|-..++||.+.        +.          ++.-+.. |-    +   
T Consensus       200 l---------ielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~  270 (758)
T KOG1310|consen  200 L---------IELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLD  270 (758)
T ss_pred             h---------heeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccc
Confidence            1         1455667777654 677888999999999421        11          1222211 10    0   


Q ss_pred             --CCCcCeEEEcCCCCEEEEEECCCcEEEEEecCCcc
Q 001415          618 --LPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIR  652 (1082)
Q Consensus       618 --~~~i~~~~~s~dg~~l~~~~~dg~i~iwd~~~~~~  652 (1082)
                        ...++-+.|+|+|.-|++.-....|+++|+..++.
T Consensus       271 ~~~~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~~~  307 (758)
T KOG1310|consen  271 RYITCCTYVTFNPNGTELLVSWGGEHVYLFDVNEDKS  307 (758)
T ss_pred             cceeeeEEEEECCCCcEEEEeeCCeEEEEEeecCCCC
Confidence              01145688999999888887778899999876643

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.73  E-value=1.1e-17  Score=181.75  Aligned_cols=284  Identities=19%  Similarity=0.271  Sum_probs=208.4

Q ss_pred             ccCCCCceeEEEEecCCCeEEEEeCCCeEEEEEccCCceeeEEEEeeccccCeeEEEecCCCCceEEEEEeCCCcEEEEE
Q 001415          416 VKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWD  495 (1082)
Q Consensus       416 ~~~h~~~V~~l~~spdg~~las~~~d~~v~iwd~~~~~~~~~~~~~~~h~~~V~~l~fs~dg~~~~l~s~s~d~~i~vwd  495 (1082)
                      +.+|...|+|+.|...|.++++|+.|..|+||..+++.++.   ...||.+.|+.++.+.+..  ++++++.|..|++|.
T Consensus       186 LlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lA---s~rGhs~ditdlavs~~n~--~iaaaS~D~vIrvWr  260 (1113)
T KOG0644|consen  186 LLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLA---SCRGHSGDITDLAVSSNNT--MIAAASNDKVIRVWR  260 (1113)
T ss_pred             HHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhc---cCCCCccccchhccchhhh--hhhhcccCceEEEEe
Confidence            78999999999999999999999999999999999998777   7999999999999998877  799999999999999


Q ss_pred             ccCCceeEEeecCCcCeEEEeeeecCCceEEEEecCCCcEEEEecCCCCceeeecCCCCceEEEEEccCCCeeeeccccc
Q 001415          496 ATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKR  575 (1082)
Q Consensus       496 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~  575 (1082)
                      +.++.++..+.+|++.|++++|+|..      +.+.||++++||.+- ..             ..+.|.-.         
T Consensus       261 l~~~~pvsvLrghtgavtaiafsP~~------sss~dgt~~~wd~r~-~~-------------~~y~prp~---------  311 (1113)
T KOG0644|consen  261 LPDGAPVSVLRGHTGAVTAIAFSPRA------SSSDDGTCRIWDARL-EP-------------RIYVPRPL---------  311 (1113)
T ss_pred             cCCCchHHHHhccccceeeeccCccc------cCCCCCceEeccccc-cc-------------cccCCCCC---------
Confidence            99999999999999999999998743      677899999998761 00             01111000         


Q ss_pred             ceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEecCCcccee
Q 001415          576 SLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLR  655 (1082)
Q Consensus       576 ~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~iwd~~~~~~~~~  655 (1082)
                                                +..++            .-+.++.|...+..+++++.|+.-..|...-      
T Consensus       312 --------------------------~~~~~------------~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~------  347 (1113)
T KOG0644|consen  312 --------------------------KFTEK------------DLVDSILFENNGDRFLTGSRDGEARNHEFEQ------  347 (1113)
T ss_pred             --------------------------Ccccc------------cceeeeeccccccccccccCCcccccchhhH------
Confidence                                      00000            0123344444455555666655544443210      


Q ss_pred             ecccccccccccccccCCCCccccCCCCceeeeccCCceeEEEecccCCCCccccccccCcccccceeEEEEccCCceee
Q 001415          656 TFENLAYDASRTSENSKNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAIL  735 (1082)
Q Consensus       656 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~  735 (1082)
                                                                                           +++..++-.++
T Consensus       348 ---------------------------------------------------------------------l~~~~~~lif~  358 (1113)
T KOG0644|consen  348 ---------------------------------------------------------------------LAWRSNLLIFV  358 (1113)
T ss_pred             ---------------------------------------------------------------------hhhhccceEEE
Confidence                                                                                 00100110011


Q ss_pred             ecccCCeEEEeeccccccCCCCCcccccCccccCCCCcceeecccCCCCCCCCccEEEeecCCCeEEEe-eCCeEEEEec
Q 001415          736 ALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSA-SGGKISLFNM  814 (1082)
Q Consensus       736 ~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~l~~~-sdg~i~iwd~  814 (1082)
                      +...|                                                        -..+.+++ .+-.+.+|++
T Consensus       359 t~ssd--------------------------------------------------------~~~~~~~ar~~~~~~vwnl  382 (1113)
T KOG0644|consen  359 TRSSD--------------------------------------------------------LSSIVVTARNDHRLCVWNL  382 (1113)
T ss_pred             ecccc--------------------------------------------------------ccccceeeeeeeEeeeeec
Confidence            11110                                                        00122333 3466889999


Q ss_pred             CCCeeEEEECCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEecccceeeeee-cccccCEEEEEEeCCCCEEEEEeCCCc
Q 001415          815 MTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKL-KGHSKRITGLAFSHALNVLVSSGADSQ  893 (1082)
Q Consensus       815 ~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l-~~h~~~V~~l~~s~d~~~l~s~s~Dg~  893 (1082)
                      .+|...+.+.+|...+..+.++|.+.+...+++.||...|||+..|..++.. .+| +.+..-+||+||..++....-|.
T Consensus       383 ~~g~l~H~l~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~~gh-~kl~d~kFSqdgts~~lsd~hgq  461 (1113)
T KOG0644|consen  383 YTGQLLHNLMGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYFIGH-GKLVDGKFSQDGTSIALSDDHGQ  461 (1113)
T ss_pred             ccchhhhhhcccccceeeeeecCCCcHhhhhccCCCceEeeecccCCcceeeeccc-ceeeccccCCCCceEecCCCCCc
Confidence            9999999999999999999999988888889999999999999988666544 455 55667799999999999888898


Q ss_pred             EEEEEcCCcc
Q 001415          894 LCVWSSDGWE  903 (1082)
Q Consensus       894 i~vwd~~~~~  903 (1082)
                      +.|.....++
T Consensus       462 l~i~g~gqs~  471 (1113)
T KOG0644|consen  462 LYILGTGQSK  471 (1113)
T ss_pred             eEEeccCCCc
Confidence            8888765543

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.72  E-value=3.1e-15  Score=148.85  Aligned_cols=241  Identities=13%  Similarity=0.191  Sum_probs=185.1

Q ss_pred             CCCccEEEeecCCCeEEEeeCCeEEEEecCCCeeEEEECCCCCCeeEEEEecCCCcEEEEEeCCC--cEEEEecccceee
Q 001415          786 EEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDS--SIQIYNVRVDEVK  863 (1082)
Q Consensus       786 ~~~i~~l~~s~dg~~l~~~sdg~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasg~~dg--~v~iwd~~~~~~~  863 (1082)
                      ...+..+.|..|...|..|+....++|+.+..............|..+-|+.   .++|..+.+.  .+++++.+.+..+
T Consensus         5 ~~ti~~~~~Nqd~~~lsvGs~~Gyk~~~~~~~~k~~~~~~~~~~IvEmLFSS---SLvaiV~~~qpr~Lkv~~~Kk~~~I   81 (391)
T KOG2110|consen    5 KPTINFIGFNQDSTLLSVGSKDGYKIFSCSPFEKCFSKDTEGVSIVEMLFSS---SLVAIVSIKQPRKLKVVHFKKKTTI   81 (391)
T ss_pred             CcceeeeeeccceeEEEccCCCceeEEecCchHHhhcccCCCeEEEEeeccc---ceeEEEecCCCceEEEEEcccCceE
Confidence            4456677799999999999977789998886655444444445577778876   4666666544  4899998888777


Q ss_pred             eeecccccCEEEEEEeCCCCEEEEEeCCCcEEEEEcCCcccccceeeeccCCCCCCCCCCcEEEEcCCCcEEEE-E--ec
Q 001415          864 SKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-V--HE  940 (1082)
Q Consensus       864 ~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~-~--~d  940 (1082)
                      ..+. ...+|.++.+.  .++|+++=.+. |.|||+++.+.     +.......+...++.++.+++.+.++|. +  ..
T Consensus        82 Ce~~-fpt~IL~VrmN--r~RLvV~Lee~-IyIydI~~Mkl-----LhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~  152 (391)
T KOG2110|consen   82 CEIF-FPTSILAVRMN--RKRLVVCLEES-IYIYDIKDMKL-----LHTIETTPPNPKGLCALSPNNANCYLAYPGSTTS  152 (391)
T ss_pred             EEEe-cCCceEEEEEc--cceEEEEEccc-EEEEeccccee-----ehhhhccCCCccceEeeccCCCCceEEecCCCCC
Confidence            6665 44678888885  55677665555 99999999543     3333322221234556666667779998 3  56


Q ss_pred             CeEEEEEccCcceeeeeccCCCCcceeEEEEcCCCceEEEeecCCc-EEEEecCCceeeeeeCCCeecCCCCCCCCceee
Q 001415          941 TQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDAT-VCVFSAANLKLRCRINPSAYLPAGVSSSNVHPL 1019 (1082)
Q Consensus       941 ~~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~dg~~l~t~s~dg~-v~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~ 1019 (1082)
                      |.|.+||+.+.+.+..+.  .|.+++.+++|++||.+|||+|+.|+ ||||.+.+|+.+..++...+        .+...
T Consensus       153 GdV~l~d~~nl~~v~~I~--aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~--------~~~Iy  222 (391)
T KOG2110|consen  153 GDVVLFDTINLQPVNTIN--AHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTY--------PVSIY  222 (391)
T ss_pred             ceEEEEEcccceeeeEEE--ecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCce--------eeEEE
Confidence            899999999999998887  89999999999999999999999998 69999999999999884443        24456


Q ss_pred             EEEEeCCCCCeEEEEecCCcEEEEccCCCC
Q 001415         1020 VIAAHPQEPNEFALGLSDGGVHVFEPLESE 1049 (1082)
Q Consensus      1020 ~~~~~~~d~~~l~s~~~dg~v~vW~~~~~~ 1049 (1082)
                      +++|+| |+++|++.+..++|+++.++...
T Consensus       223 SL~Fs~-ds~~L~~sS~TeTVHiFKL~~~~  251 (391)
T KOG2110|consen  223 SLSFSP-DSQFLAASSNTETVHIFKLEKVS  251 (391)
T ss_pred             EEEECC-CCCeEEEecCCCeEEEEEecccc
Confidence            999999 68999999999999999998866

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.72  E-value=6.4e-16  Score=153.53  Aligned_cols=323  Identities=11%  Similarity=0.091  Sum_probs=211.9

Q ss_pred             eecCCCCCceEEEEecCCCeEEEEEcCCCcEEEEEccccceeeeeceeeeccCCCCcccccccccCCCCceeEEEEecCC
Q 001415          353 RTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDG  432 (1082)
Q Consensus       353 ~~~~h~~~v~~~~~spdg~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg  432 (1082)
                      -+++|.+.|+++.||.+|++ ||+|+.|..+++|+++.-...++           ..|.+. .-..|...|.|++|....
T Consensus        51 D~~~H~GCiNAlqFS~N~~~-L~SGGDD~~~~~W~~de~~~~k~-----------~KPI~~-~~~~H~SNIF~L~F~~~N  117 (609)
T KOG4227|consen   51 DVREHTGCINALQFSHNDRF-LASGGDDMHGRVWNVDELMVRKT-----------PKPIGV-MEHPHRSNIFSLEFDLEN  117 (609)
T ss_pred             hhhhhccccceeeeccCCeE-EeecCCcceeeeechHHHHhhcC-----------CCCcee-ccCccccceEEEEEccCC
Confidence            46789999999999999995 99999999999999975433221           011111 234667899999999999


Q ss_pred             CeEEEEeCCCeEEEEEccCCceeeEEEEeeccc---cCeeEEEecCCCCceEEEEEeCCCcEEEEEccCCc-ee--EEee
Q 001415          433 SLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHV---GGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGA-KQ--YIFE  506 (1082)
Q Consensus       433 ~~las~~~d~~v~iwd~~~~~~~~~~~~~~~h~---~~V~~l~fs~dg~~~~l~s~s~d~~i~vwd~~~~~-~~--~~~~  506 (1082)
                      ++|.+|..+++|.+-|+++.+.+.    ...|.   +.|+.+..+|-..  .|++.+.++.|.+||.+... .+  ..+.
T Consensus       118 ~~~~SG~~~~~VI~HDiEt~qsi~----V~~~~~~~~~VY~m~~~P~DN--~~~~~t~~~~V~~~D~Rd~~~~~~~~~~A  191 (609)
T KOG4227|consen  118 RFLYSGERWGTVIKHDIETKQSIY----VANENNNRGDVYHMDQHPTDN--TLIVVTRAKLVSFIDNRDRQNPISLVLPA  191 (609)
T ss_pred             eeEecCCCcceeEeeecccceeee----eecccCcccceeecccCCCCc--eEEEEecCceEEEEeccCCCCCCceeeec
Confidence            999999999999999999987665    22344   4899999999987  79999999999999987644 22  2223


Q ss_pred             cCCcCeEEEeeeecCCceEEEEecCCCcEEEEecCCCCceeeecCCCCceEEEEEccCCCeeeecccccceeEEEecCCC
Q 001415          507 GHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTK  586 (1082)
Q Consensus       507 ~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~i~~~~~~~~~  586 (1082)
                      ........+.|+|... .+|++.+..+-+-+||.+................              ......-.+.|+|.|
T Consensus       192 N~~~~F~t~~F~P~~P-~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~--------------~~~~~~M~~~~~~~G  256 (609)
T KOG4227|consen  192 NSGKNFYTAEFHPETP-ALILVNSETGGPNVFDRRMQARPVYQRSMFKGLP--------------QENTEWMGSLWSPSG  256 (609)
T ss_pred             CCCccceeeeecCCCc-eeEEeccccCCCCceeeccccchHHhhhccccCc--------------ccchhhhheeeCCCC
Confidence            3345566777887654 6899999999999999876433221100000000              000112234566666


Q ss_pred             CEEEEEeCCCeEEEEECCCcceE-EEEecC----CCCCCcCeEEEcCCCCEEEEEECCCcEEEEEecCCcccee-ecccc
Q 001415          587 NRFLAAGDDFSIKFWDMDSVQLL-TSIDAD----GGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLR-TFENL  660 (1082)
Q Consensus       587 ~~l~~~~~dg~i~iwd~~~~~~~-~~~~~~----~~~~~i~~~~~s~dg~~l~~~~~dg~i~iwd~~~~~~~~~-~~~~~  660 (1082)
                      ++|++.-....-.+||+.+..+. ..+...    -....+.+++|..|-. +++|+.+-.|++|.+........ +.-++
T Consensus       257 ~Q~msiRR~~~P~~~D~~S~R~~V~k~D~N~~GY~N~~T~KS~~F~~D~~-v~tGSD~~~i~~WklP~~~ds~G~~~IG~  335 (609)
T KOG4227|consen  257 NQFMSIRRGKCPLYFDFISQRCFVLKSDHNPNGYCNIKTIKSMTFIDDYT-VATGSDHWGIHIWKLPRANDSYGFTQIGH  335 (609)
T ss_pred             CeehhhhccCCCEEeeeecccceeEeccCCCCcceeeeeeeeeeeeccee-eeccCcccceEEEecCCCccccCccccCc
Confidence            67777665555567777665442 222211    1123466788876554 89999999999998753311110 00111


Q ss_pred             cccccccccccCCCCccccCCCCceeeeccCCceeEEEecccCCCCccccccccCcccccceeEEEEccCCceeeecccC
Q 001415          661 AYDASRTSENSKNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASN  740 (1082)
Q Consensus       661 ~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d  740 (1082)
                      .....              |. ..++-    +              .+..  +  ++|...+..+.|++....|++.+-.
T Consensus       336 ~~~~~--------------~~-~~~i~----~--------------~~~V--L--rGHRSv~NQVRF~~H~~~l~SSGVE  378 (609)
T KOG4227|consen  336 DEEEM--------------PS-EIFIE----K--------------ELTV--L--RGHRSVPNQVRFSQHNNLLVSSGVE  378 (609)
T ss_pred             chhhC--------------ch-hheec----c--------------eeEE--E--ecccccccceeecCCcceEeccchh
Confidence            10000              00 00000    0              0111  1  2388889999999999999999999


Q ss_pred             CeEEEee
Q 001415          741 AIHLLWK  747 (1082)
Q Consensus       741 ~~i~iw~  747 (1082)
                      ..+++|.
T Consensus       379 ~~~KlWS  385 (609)
T KOG4227|consen  379 NSFKLWS  385 (609)
T ss_pred             hheeccc
Confidence            9999995

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.72  E-value=6.5e-15  Score=162.07  Aligned_cols=252  Identities=11%  Similarity=0.099  Sum_probs=163.8

Q ss_pred             CCccEEEeecCCCeEEEee--CCeEEEEecC-CCee--EEEECCCCCCeeEEEEecCCCcEEEEEe-CCCcEEEEeccc-
Q 001415          787 EAVPCFALSKNDSYVMSAS--GGKISLFNMM-TFKT--MATFMPPPPAATFLAFHPQDNNIIAIGM-DDSSIQIYNVRV-  859 (1082)
Q Consensus       787 ~~i~~l~~s~dg~~l~~~s--dg~i~iwd~~-~~~~--~~~~~~~~~~v~~l~~sp~~~~~lasg~-~dg~v~iwd~~~-  859 (1082)
                      .....++++|++++|++++  ++.|.+|++. +++.  ..... .......++|+| ++++|++++ .++.|.+|++.+ 
T Consensus        35 ~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~-~~~~p~~i~~~~-~g~~l~v~~~~~~~v~v~~~~~~  112 (330)
T PRK11028         35 GQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESP-LPGSPTHISTDH-QGRFLFSASYNANCVSVSPLDKD  112 (330)
T ss_pred             CCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeec-CCCCceEEEECC-CCCEEEEEEcCCCeEEEEEECCC
Confidence            4567889999999987775  5889999987 3332  22222 234577899999 777776665 488999999974 


Q ss_pred             ce---eeeeecccccCEEEEEEeCCCCEEEEEe-CCCcEEEEEcCCcccccc---eeeeccCCCCCCCCCCcEEEEcCCC
Q 001415          860 DE---VKSKLKGHSKRITGLAFSHALNVLVSSG-ADSQLCVWSSDGWEKQKN---RFLQIPTGRTPTAQSDTRVQFHQDQ  932 (1082)
Q Consensus       860 ~~---~~~~l~~h~~~V~~l~~s~d~~~l~s~s-~Dg~i~vwd~~~~~~~~~---~~~~~~~~~~~~~~~v~~~~fspdg  932 (1082)
                      +.   .+..+.+ .....+++++|+++++++++ .++.|.+||+++......   .......+     .....++|+|||
T Consensus       113 g~~~~~~~~~~~-~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g-----~~p~~~~~~pdg  186 (330)
T PRK11028        113 GIPVAPIQIIEG-LEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEG-----AGPRHMVFHPNQ  186 (330)
T ss_pred             CCCCCceeeccC-CCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCCC-----CCCceEEECCCC
Confidence            32   2233332 23467789999999886554 568999999987322111   11122222     345789999999


Q ss_pred             cEEEEE--ecCeEEEEEccC--cc--eeeeeccC----CCCcceeEEEEcCCCceEEEeec-CCcEEEEecCCceeeeee
Q 001415          933 IHFLVV--HETQLAIFETTK--LE--CVKQWVPR----ESSAPITHATFSCDSQLVYACFL-DATVCVFSAANLKLRCRI 1001 (1082)
Q Consensus       933 ~~l~~~--~d~~i~iwd~~~--~~--~~~~~~~~----~h~~~i~~l~~s~dg~~l~t~s~-dg~v~vwd~~~~~~~~~~ 1001 (1082)
                      ++++++  .++.|.+|+++.  ++  .+..+...    .+......+.|+|||++|+++.. ++.|.+|++........+
T Consensus       187 ~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~  266 (330)
T PRK11028        187 QYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSF  266 (330)
T ss_pred             CEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEE
Confidence            999885  368999999973  32  23322210    11223346899999999999864 689999999653321111


Q ss_pred             CCCeecCCCCCCCCceeeEEEEeCCCCCeEEEEec-CCcEEEEccCCCCCcccc
Q 001415         1002 NPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLS-DGGVHVFEPLESEGKWGV 1054 (1082)
Q Consensus      1002 ~~~~~~~~gh~~~~v~~~~~~~~~~d~~~l~s~~~-dg~v~vW~~~~~~~~~~~ 1054 (1082)
                      .  ...+.+     ..+..+.++| ||++|+++.. +++|.+|++....+.+..
T Consensus       267 ~--~~~~~~-----~~p~~~~~~~-dg~~l~va~~~~~~v~v~~~~~~~g~l~~  312 (330)
T PRK11028        267 E--GHQPTE-----TQPRGFNIDH-SGKYLIAAGQKSHHISVYEIDGETGLLTE  312 (330)
T ss_pred             e--EEEecc-----ccCCceEECC-CCCEEEEEEccCCcEEEEEEcCCCCcEEE
Confidence            1  111112     2334688999 5788777665 899999988654433433

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.72  E-value=5.4e-16  Score=152.40  Aligned_cols=276  Identities=13%  Similarity=0.135  Sum_probs=191.6

Q ss_pred             EEEEEcCCCcEEEEEccccceeeeeceeeeccCCCCcccccccccCCCCceeEEEEec--CCCeEEEEeCCCeEEEEEcc
Q 001415          373 LLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP--DGSLFGVAYSRHIVQIYSYH  450 (1082)
Q Consensus       373 llasgs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~sp--dg~~las~~~d~~v~iwd~~  450 (1082)
                      .+|++-..|.|++||..+++.+..                   +++|...++.++|..  ....+.+|+.||+|++||+.
T Consensus        42 ~vav~lSngsv~lyd~~tg~~l~~-------------------fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~R  102 (376)
T KOG1188|consen   42 AVAVSLSNGSVRLYDKGTGQLLEE-------------------FKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIR  102 (376)
T ss_pred             eEEEEecCCeEEEEeccchhhhhe-------------------ecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEee
Confidence            588899999999999999888764                   788888999999988  46678899999999999999


Q ss_pred             CCceeeEEEEeeccc-cCeeEEEecCCCCceEEEEEe----CCCcEEEEEccCCce-eEEe-ecCCcCeEEEeeeecCCc
Q 001415          451 GGDEVRQHLEIDAHV-GGVNDIAFSHPNKQLCVITCG----DDKTIKVWDATNGAK-QYIF-EGHEAPVYSVCPHHKENI  523 (1082)
Q Consensus       451 ~~~~~~~~~~~~~h~-~~V~~l~fs~dg~~~~l~s~s----~d~~i~vwd~~~~~~-~~~~-~~h~~~v~~~~~~~~~~~  523 (1082)
                      ......+. .+.+|. .+..|++..-.++  ++++|.    .+-.|.+||++..+. ++.+ ..|...|++++|+|+.. 
T Consensus       103 s~~e~a~~-~~~~~~~~~f~~ld~nck~~--ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~p-  178 (376)
T KOG1188|consen  103 SQAESARI-SWTQQSGTPFICLDLNCKKN--IIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDP-  178 (376)
T ss_pred             cchhhhhe-eccCCCCCcceEeeccCcCC--eEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCC-
Confidence            87655433 455565 4666777665666  677765    456799999998766 5544 56999999999999765 


Q ss_pred             eEEEEecCCCcEEEEecCCCCce---eeecCCCCceEEEEEccCCCeeeecccccceeEEEecCCCCEEEEEeCCCeEEE
Q 001415          524 QFIFSTALDGKIKAWLYDNLGSR---VDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKF  600 (1082)
Q Consensus       524 ~~l~s~~~dg~i~iwd~~~~~~~---~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i  600 (1082)
                      ++|++|+.||.|.++|+......   ...-.+...|..+.|..++-                    +++.+-+...+..+
T Consensus       179 nlLlSGSvDGLvnlfD~~~d~EeDaL~~viN~~sSI~~igw~~~~y--------------------krI~clTH~Etf~~  238 (376)
T KOG1188|consen  179 NLLLSGSVDGLVNLFDTKKDNEEDALLHVINHGSSIHLIGWLSKKY--------------------KRIMCLTHMETFAI  238 (376)
T ss_pred             CeEEeecccceEEeeecCCCcchhhHHHhhcccceeeeeeeecCCc--------------------ceEEEEEccCceeE
Confidence            79999999999999999764321   12222334455555555542                    35778888899999


Q ss_pred             EECCCcceEEEEecCCCC----------CCcCeEEEcC-CCCEEEEEEC-CCcEEEEEecC---C--ccceeeccccccc
Q 001415          601 WDMDSVQLLTSIDADGGL----------PASPRIRFNK-DGCLLAVSTN-DNGIKILATSD---G--IRLLRTFENLAYD  663 (1082)
Q Consensus       601 wd~~~~~~~~~~~~~~~~----------~~i~~~~~s~-dg~~l~~~~~-dg~i~iwd~~~---~--~~~~~~~~~~~~~  663 (1082)
                      |+++.+.....+....-.          ..+... .+| ++...+.++. -+...++-+..   +  ......+.++...
T Consensus       239 ~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~~-~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~e  317 (376)
T KOG1188|consen  239 YELEDGSEETWLENPDVSADDLRKEDNCDYVINE-HSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEE  317 (376)
T ss_pred             EEccCCChhhcccCccchhhhHHhhhhhhheeec-ccCCCcceEEEeccccCceeEEEeeecccccccCccccccCCcHH
Confidence            999988765544322100          011111 123 4455555544 55665554432   2  2334455555555


Q ss_pred             ccccccccCCCCccccCCCCceeeeccCCceeEEEec
Q 001415          664 ASRTSENSKNGDVRSLADVKPRITEESNDKSKVWKLT  700 (1082)
Q Consensus       664 ~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~iw~~~  700 (1082)
                      +.+ .+.|       ...+..+.+|+.||.+.+|...
T Consensus       318 iVR-~i~~-------~~~~~~l~TGGEDG~l~~Wk~~  346 (376)
T KOG1188|consen  318 IVR-DILF-------DVKNDVLYTGGEDGLLQAWKVE  346 (376)
T ss_pred             HHH-HHhh-------hcccceeeccCCCceEEEEecC
Confidence            544 4444       5678889999999999999864

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.72  E-value=2.6e-15  Score=155.59  Aligned_cols=179  Identities=20%  Similarity=0.262  Sum_probs=135.9

Q ss_pred             eecC-CCCCceEEEEecCCCeEEEEEcCCCcEEEEEccccceeeeeceeeeccCCCCcccccccccCCCCceeEEEEecC
Q 001415          353 RTLN-QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPD  431 (1082)
Q Consensus       353 ~~~~-h~~~v~~~~~spdg~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spd  431 (1082)
                      +.+. |.+.|.|-.|+|||.- |++++.||.|++|.- +|.+..                   .+.....+|.|++|.|+
T Consensus        98 ~sv~AH~~A~~~gRW~~dGtg-Llt~GEDG~iKiWSr-sGMLRS-------------------tl~Q~~~~v~c~~W~p~  156 (737)
T KOG1524|consen   98 RSISAHAAAISSGRWSPDGAG-LLTAGEDGVIKIWSR-SGMLRS-------------------TVVQNEESIRCARWAPN  156 (737)
T ss_pred             hhhhhhhhhhhhcccCCCCce-eeeecCCceEEEEec-cchHHH-------------------HHhhcCceeEEEEECCC
Confidence            3344 9999999999999996 888899999999984 343332                   24556779999999999


Q ss_pred             CCeEEEEeCCCeEEEEEccCCceeeEEEEeeccccCeeEEEecCCCCceEEEEEeCCCcEEEEEccCCceeEEeecCCcC
Q 001415          432 GSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAP  511 (1082)
Q Consensus       432 g~~las~~~d~~v~iwd~~~~~~~~~~~~~~~h~~~V~~l~fs~dg~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~  511 (1082)
                      ...++.+. .+.+.|=-+.-...+-   ..+.|.+-|.++.|++...  ++++|+.|...+||| ..|..+..-..|..+
T Consensus       157 S~~vl~c~-g~h~~IKpL~~n~k~i---~WkAHDGiiL~~~W~~~s~--lI~sgGED~kfKvWD-~~G~~Lf~S~~~ey~  229 (737)
T KOG1524|consen  157 SNSIVFCQ-GGHISIKPLAANSKII---RWRAHDGLVLSLSWSTQSN--IIASGGEDFRFKIWD-AQGANLFTSAAEEYA  229 (737)
T ss_pred             CCceEEec-CCeEEEeeccccccee---EEeccCcEEEEeecCcccc--ceeecCCceeEEeec-ccCcccccCChhccc
Confidence            98888774 4557776666543332   6889999999999999999  899999999999999 678888888889999


Q ss_pred             eEEEeeeecCCceEEEEecCCCcEEEEecCCCCceeeecCCCCceEEEEEccCCCeeeecccc
Q 001415          512 VYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRK  574 (1082)
Q Consensus       512 v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~  574 (1082)
                      |++++|.|+.   .++.++. +++|+=           ....+.|..++||+||..+..|...
T Consensus       230 ITSva~npd~---~~~v~S~-nt~R~~-----------~p~~GSifnlsWS~DGTQ~a~gt~~  277 (737)
T KOG1524|consen  230 ITSVAFNPEK---DYLLWSY-NTARFS-----------SPRVGSIFNLSWSADGTQATCGTST  277 (737)
T ss_pred             eeeeeecccc---ceeeeee-eeeeec-----------CCCccceEEEEEcCCCceeeccccC
Confidence            9999998763   3444442 333311           2234567778888888755444443

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.71  E-value=4.2e-16  Score=149.16  Aligned_cols=228  Identities=17%  Similarity=0.211  Sum_probs=174.3

Q ss_pred             CCeEEEEecCCCe--e-EEEECCCCCCeeEEEEecCCCcEEEEEeCC-------CcEEEEeccc---------ceeeeee
Q 001415          806 GGKISLFNMMTFK--T-MATFMPPPPAATFLAFHPQDNNIIAIGMDD-------SSIQIYNVRV---------DEVKSKL  866 (1082)
Q Consensus       806 dg~i~iwd~~~~~--~-~~~~~~~~~~v~~l~~sp~~~~~lasg~~d-------g~v~iwd~~~---------~~~~~~l  866 (1082)
                      ++.|.+.+++...  . ...|..+.++|..++-+|.+.++|++...+       ..+.||.+..         .+++..+
T Consensus        39 dNqVhll~~d~e~s~l~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~L  118 (370)
T KOG1007|consen   39 DNQVHLLRLDSEGSELLSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASL  118 (370)
T ss_pred             cceeEEEEecCccchhhhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcC
Confidence            5778877776432  2 245677889999999999888999987753       2467898753         2445555


Q ss_pred             c-ccccCEEEEEEeCCCCEEEEEeCCCcEEEEEcCCcccccceeeeccCCCCCCCCCCcEEEEcC--CCcEEEEEecCeE
Q 001415          867 K-GHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQ--DQIHFLVVHETQL  943 (1082)
Q Consensus       867 ~-~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fsp--dg~~l~~~~d~~i  943 (1082)
                      . .+-+.|.|+.|.|++..+++-. |..|.+|+++........+.......  .....++-+|||  ||..+++..|+++
T Consensus       119 dteavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e--~~~~ftsg~WspHHdgnqv~tt~d~tl  195 (370)
T KOG1007|consen  119 DTEAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAE--MRHSFTSGAWSPHHDGNQVATTSDSTL  195 (370)
T ss_pred             CHHHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeeccccccc--ccceecccccCCCCccceEEEeCCCcE
Confidence            5 5667999999999999999886 78899999998655322222111111  113457788998  8999999999999


Q ss_pred             EEEEccCcceeeeeccCCCCcceeEEEEcCCCc-eEEEeecCCcEEEEecCCcee-eeeeCCCeecCCCCCCCCceeeEE
Q 001415          944 AIFETTKLECVKQWVPRESSAPITHATFSCDSQ-LVYACFLDATVCVFSAANLKL-RCRINPSAYLPAGVSSSNVHPLVI 1021 (1082)
Q Consensus       944 ~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~dg~-~l~t~s~dg~v~vwd~~~~~~-~~~~~~~~~~~~gh~~~~v~~~~~ 1021 (1082)
                      ..||+++..+...+. .+|...|..+.|.|+.+ +|+++++||.|++||...-+. +..+.       +| .|.++  ++
T Consensus       196 ~~~D~RT~~~~~sI~-dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~-------~H-sHWvW--~V  264 (370)
T KOG1007|consen  196 QFWDLRTMKKNNSIE-DAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELP-------GH-SHWVW--AV  264 (370)
T ss_pred             EEEEccchhhhcchh-hhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccC-------CC-ceEEE--EE
Confidence            999999988877665 47889999999999877 588999999999999986543 33333       54 67777  89


Q ss_pred             EEeCCCCCeEEEEecCCcEEEEccCC
Q 001415         1022 AAHPQEPNEFALGLSDGGVHVFEPLE 1047 (1082)
Q Consensus      1022 ~~~~~d~~~l~s~~~dg~v~vW~~~~ 1047 (1082)
                      .|+|...+++++||.|..|.+|...+
T Consensus       265 Rfn~~hdqLiLs~~SDs~V~Lsca~s  290 (370)
T KOG1007|consen  265 RFNPEHDQLILSGGSDSAVNLSCASS  290 (370)
T ss_pred             EecCccceEEEecCCCceeEEEeccc
Confidence            99997778999999999999998754

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.71  E-value=1.2e-15  Score=146.12  Aligned_cols=212  Identities=15%  Similarity=0.229  Sum_probs=159.6

Q ss_pred             ccccccCCCCceeEEEEec-CCCeEEEEeCC-------CeEEEEEccCCcee------eEEEEee-ccccCeeEEEecCC
Q 001415          412 QAALVKDPGVSVNRVIWSP-DGSLFGVAYSR-------HIVQIYSYHGGDEV------RQHLEID-AHVGGVNDIAFSHP  476 (1082)
Q Consensus       412 ~~~~~~~h~~~V~~l~~sp-dg~~las~~~d-------~~v~iwd~~~~~~~------~~~~~~~-~h~~~V~~l~fs~d  476 (1082)
                      ..+++..|.+.|+.++-+| |.+.|+++..+       ..+.||.+......      .....+. .+-+.|.|+.|.|+
T Consensus        55 ~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pn  134 (370)
T KOG1007|consen   55 LSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPN  134 (370)
T ss_pred             hhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCC
Confidence            3346888999999999999 77788887653       24789998643221      1111233 45678999999999


Q ss_pred             CCceEEEEEeCCCcEEEEEccCCce-eEEee-----cCCcCeEEEeeeecCCceEEEEecCCCcEEEEecCCCCceeee-
Q 001415          477 NKQLCVITCGDDKTIKVWDATNGAK-QYIFE-----GHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDY-  549 (1082)
Q Consensus       477 g~~~~l~s~s~d~~i~vwd~~~~~~-~~~~~-----~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-  549 (1082)
                      +.+  +++-. |..|.+|+++.+.. +..+.     +|....++-+|+|..+++.+++.+ |+++..||+++..+...+ 
T Consensus       135 s~k--lasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt~-d~tl~~~D~RT~~~~~sI~  210 (370)
T KOG1007|consen  135 SDK--LASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATTS-DSTLQFWDLRTMKKNNSIE  210 (370)
T ss_pred             CCe--eEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEeC-CCcEEEEEccchhhhcchh
Confidence            984  55554 88999999998766 33332     355667888899988887777664 899999999987766544 


Q ss_pred             cCCCCceEEEEEccCCCeeeecccccceeEEEecCCCCEEEEEeCCCeEEEEECCC-cceEEEEecCCCCCCcCeEEEcC
Q 001415          550 EAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDS-VQLLTSIDADGGLPASPRIRFNK  628 (1082)
Q Consensus       550 ~~~~~~v~~~~~s~d~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~i~~~~~s~  628 (1082)
                      ..|+..|..+.|.|+.+.                    +|++++.||.|++||.+. ..++..+..|.+  .+.++.|+|
T Consensus       211 dAHgq~vrdlDfNpnkq~--------------------~lvt~gDdgyvriWD~R~tk~pv~el~~HsH--WvW~VRfn~  268 (370)
T KOG1007|consen  211 DAHGQRVRDLDFNPNKQH--------------------ILVTCGDDGYVRIWDTRKTKFPVQELPGHSH--WVWAVRFNP  268 (370)
T ss_pred             hhhcceeeeccCCCCceE--------------------EEEEcCCCccEEEEeccCCCccccccCCCce--EEEEEEecC
Confidence            456667777777776552                    578899999999999874 556788887777  899999999


Q ss_pred             -CCCEEEEEECCCcEEEEEecC
Q 001415          629 -DGCLLAVSTNDNGIKILATSD  649 (1082)
Q Consensus       629 -dg~~l~~~~~dg~i~iwd~~~  649 (1082)
                       ..+++++|+.|..|.+|....
T Consensus       269 ~hdqLiLs~~SDs~V~Lsca~s  290 (370)
T KOG1007|consen  269 EHDQLILSGGSDSAVNLSCASS  290 (370)
T ss_pred             ccceEEEecCCCceeEEEeccc
Confidence             567888999999999987643

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.70  E-value=1.4e-15  Score=169.04  Aligned_cols=260  Identities=20%  Similarity=0.263  Sum_probs=191.3

Q ss_pred             eecCCCCCceEEEEecCCCeEEEEEcCCCcEEEEEccccceeeeeceeeeccCCCCcccccccccCCCCceeEEEEecCC
Q 001415          353 RTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDG  432 (1082)
Q Consensus       353 ~~~~h~~~v~~~~~spdg~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg  432 (1082)
                      ..+.-..+|+|++|+|....++|.|..+|.|.+||+..+......             ........|..+|+.+.|-.+-
T Consensus       237 ~~~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s-------------~ls~~~~sh~~~v~~vvW~~~~  303 (555)
T KOG1587|consen  237 LVLESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPS-------------GLSALEVSHSEPVTAVVWLQNE  303 (555)
T ss_pred             EEEecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCc-------------ccccccccCCcCeEEEEEeccC
Confidence            566678999999999999989999999999999999887653210             1111356899999999998754


Q ss_pred             C--eEEEEeCCCeEEEEEccCCceeeEEEEee---------ccccCeeEEEecCCCCceEEEEEeCCCcEEEEEcc---C
Q 001415          433 S--LFGVAYSRHIVQIYSYHGGDEVRQHLEID---------AHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDAT---N  498 (1082)
Q Consensus       433 ~--~las~~~d~~v~iwd~~~~~~~~~~~~~~---------~h~~~V~~l~fs~dg~~~~l~s~s~d~~i~vwd~~---~  498 (1082)
                      .  -+++++.||.|..|+++.-........+.         .-...+++++|.+.... .++.|+.+|.|.-=+-.   .
T Consensus       304 ~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~-~FiVGTe~G~v~~~~r~g~~~  382 (555)
T KOG1587|consen  304 HNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPN-HFIVGTEEGKVYKGCRKGYTP  382 (555)
T ss_pred             CCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCc-eEEEEcCCcEEEEEeccCCcc
Confidence            4  49999999999999887433211110111         12346899999988777 78999999998773322   2


Q ss_pred             Cc-----eeEEeecCCcCeEEEeeeecCCceEEEEecCCCcEEEEecC-CCCceeeecCCCCceEEEEEccCCCeeeecc
Q 001415          499 GA-----KQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYD-NLGSRVDYEAPGRWCTTMAYSADGTRTYQGF  572 (1082)
Q Consensus       499 ~~-----~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~-~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~  572 (1082)
                      +.     .+..+..|.++|.++.++|-.. ..+.+++ |.++++|... ...+...+..+...+.+++|||-...     
T Consensus       383 ~~~~~~~~~~~~~~h~g~v~~v~~nPF~~-k~fls~g-DW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpa-----  455 (555)
T KOG1587|consen  383 APEVSYKGHSTFITHIGPVYAVSRNPFYP-KNFLSVG-DWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPA-----  455 (555)
T ss_pred             cccccccccccccccCcceEeeecCCCcc-ceeeeec-cceeEeccccCCCCcchhhhhccceeeeeEEcCcCce-----
Confidence            22     2335567899999999877664 3444444 9999999887 55666666666777888888886542     


Q ss_pred             cccceeEEEecCCCCEEEEEeCCCeEEEEECCCcc--eEEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEecCC
Q 001415          573 RKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQ--LLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG  650 (1082)
Q Consensus       573 ~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~--~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~iwd~~~~  650 (1082)
                                     .|+++..||.|.+||+....  ++.+....  ....+.+.|+++|+.|++|...|.+.+|++...
T Consensus       456 ---------------vF~~~d~~G~l~iWDLl~~~~~Pv~s~~~~--~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~~  518 (555)
T KOG1587|consen  456 ---------------VFATVDGDGNLDIWDLLQDDEEPVLSQKVC--SPALTRVRWSPNGKLLAVGDANGTTHILKLSES  518 (555)
T ss_pred             ---------------EEEEEcCCCceehhhhhccccCCccccccc--ccccceeecCCCCcEEEEecCCCcEEEEEcCch
Confidence                           57888899999999986543  34444333  335678889999999999999999999998644

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=99.70  E-value=1.8e-16  Score=162.72  Aligned_cols=322  Identities=17%  Similarity=0.217  Sum_probs=228.9

Q ss_pred             EeeccccCeeEEEecCCCCceEEEEEeCCCcEEEEEccCCceeEEe-ecCCcCeEEEeeeecCCceEEEEecCCCcEEEE
Q 001415          460 EIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIF-EGHEAPVYSVCPHHKENIQFIFSTALDGKIKAW  538 (1082)
Q Consensus       460 ~~~~h~~~V~~l~fs~dg~~~~l~s~s~d~~i~vwd~~~~~~~~~~-~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw  538 (1082)
                      .|.+|.+.|..|.|...|.  .+++|+.|..|.+||+..++....+ .||...|....|.|..+...+++++.||.+++=
T Consensus       137 kL~~H~GcVntV~FN~~Gd--~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s  214 (559)
T KOG1334|consen  137 KLNKHKGCVNTVHFNQRGD--VLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVS  214 (559)
T ss_pred             cccCCCCccceeeecccCc--eeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceeee
Confidence            5889999999999999999  8999999999999999998887666 579888988889888888899999999999987


Q ss_pred             ecCCCCce---eeecCCCCceEEEEEccCCCeeeecccccceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEEecC
Q 001415          539 LYDNLGSR---VDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDAD  615 (1082)
Q Consensus       539 d~~~~~~~---~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~  615 (1082)
                      .+......   ..+..|.+.|..++.-|+..                    ..|.++++|+.+.-.|++.+.....+...
T Consensus       215 ~i~~t~~~e~t~rl~~h~g~vhklav~p~sp--------------------~~f~S~geD~~v~~~Dlr~~~pa~~~~cr  274 (559)
T KOG1334|consen  215 EILETGYVENTKRLAPHEGPVHKLAVEPDSP--------------------KPFLSCGEDAVVFHIDLRQDVPAEKFVCR  274 (559)
T ss_pred             eeccccceecceecccccCccceeeecCCCC--------------------CcccccccccceeeeeeccCCccceeeee
Confidence            66543332   23445556666666666554                    25889999999999999887655444322


Q ss_pred             CCC----CCcCeEEEcCCC-CEEEEEECCCcEEEEEecCCccceeecccccccccccccccCCCCccccCCCCceeeecc
Q 001415          616 GGL----PASPRIRFNKDG-CLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKNGDVRSLADVKPRITEES  690 (1082)
Q Consensus       616 ~~~----~~i~~~~~s~dg-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~  690 (1082)
                      ...    .....++..|.. ..+++++.|..+++||.+.-...  ...+    +   .-.|       .|          
T Consensus       275 ~~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e--~~n~----~---~~~f-------~p----------  328 (559)
T KOG1334|consen  275 EADEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKE--ENNG----V---LDKF-------CP----------  328 (559)
T ss_pred             ccCCccceeeeeEecCCCCccccccCChhhhhhhhcccchhhc--cccc----h---hhhc-------CC----------
Confidence            111    245688888854 58899999999999987543110  0000    0   0001       00          


Q ss_pred             CCceeEEEecccCCCCccccccccCcccccceeEEEEccCCceeeecccCCeEEEeeccccccCCCCCcccccCccccCC
Q 001415          691 NDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQP  770 (1082)
Q Consensus       691 d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~  770 (1082)
                                     ..     +.. .....|++++|+.++.-+++...|-.|+++.-....    |.......++    
T Consensus       329 ---------------~h-----l~~-d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~----G~~p~~~s~~----  379 (559)
T KOG1334|consen  329 ---------------HH-----LVE-DDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGD----GSEPDPSSPR----  379 (559)
T ss_pred             ---------------cc-----ccc-cCcccceeEEecCCccceeeeecccceEEecccccc----CCCCCCCcch----
Confidence                           00     000 134568999999998889998999899988433211    1111111100    


Q ss_pred             CCcceeecccCCCCCCCCccEEEe-ecCCCeEEEeeC-CeEEEEecCCCeeEEEECCCCCCeeEEEEecCCCcEEEEEeC
Q 001415          771 PSGIMMTNDVTDSNPEEAVPCFAL-SKNDSYVMSASG-GKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMD  848 (1082)
Q Consensus       771 ~~~~~~~~~~~~~~~~~~i~~l~~-s~dg~~l~~~sd-g~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasg~~  848 (1082)
                        ........++......|..+-| -|...|+++|+| |.|.||+-.+++.++.+.+...-|+|+.-+| --.+||+.+-
T Consensus       380 --~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~VVNCLEpHP-~~PvLAsSGi  456 (559)
T KOG1334|consen  380 --EQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRHVVNCLEPHP-HLPVLASSGI  456 (559)
T ss_pred             --hhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHHHHhhcccceEeccCCCC-CCchhhccCC
Confidence              0111111333233455777765 588899999998 9999999999999999998888999999999 7789999999


Q ss_pred             CCcEEEEecccce
Q 001415          849 DSSIQIYNVRVDE  861 (1082)
Q Consensus       849 dg~v~iwd~~~~~  861 (1082)
                      |..|+||...+.+
T Consensus       457 d~DVKIWTP~~~e  469 (559)
T KOG1334|consen  457 DHDVKIWTPLTAE  469 (559)
T ss_pred             ccceeeecCCccc
Confidence            9999999875443

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.70  E-value=5e-15  Score=165.59  Aligned_cols=303  Identities=17%  Similarity=0.219  Sum_probs=205.3

Q ss_pred             ceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEEecCCC-CCCcCeEEEcC--CCCEEEEEECCCcEEEEEecCCcc
Q 001415          576 SLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGG-LPASPRIRFNK--DGCLLAVSTNDNGIKILATSDGIR  652 (1082)
Q Consensus       576 ~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-~~~i~~~~~s~--dg~~l~~~~~dg~i~iwd~~~~~~  652 (1082)
                      .-..+.|+|-...++++++.-.|+|||.+.++.+..+..... ...|+.+.+-.  |..++++++.||.|+||+-.....
T Consensus      1066 ~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~ 1145 (1387)
T KOG1517|consen 1066 PPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKW 1145 (1387)
T ss_pred             CCceeeecCCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEeccccccc
Confidence            344567777777899999888999999999999887764432 23566676654  556788888888888886432100


Q ss_pred             ceeecccccccccccccccCCCCccccCCCCceeeeccCCceeEEEecccCCCCccccccccCcccccceeEEEEccCCc
Q 001415          653 LLRTFENLAYDASRTSENSKNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGN  732 (1082)
Q Consensus       653 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~  732 (1082)
                                                  +...++++                                      |++=..
T Consensus      1146 ----------------------------~~~eLVTa--------------------------------------w~~Ls~ 1159 (1387)
T KOG1517|consen 1146 ----------------------------KKPELVTA--------------------------------------WSSLSD 1159 (1387)
T ss_pred             ----------------------------CCceeEEe--------------------------------------eccccc
Confidence                                        00001111                                      111011


Q ss_pred             eeeecccCCeEEEeeccccccCCCCCcccccCccccCCCCcceeecccCCCCCCCCccEEEeec-CCCeEEEeeCCeEEE
Q 001415          733 AILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSK-NDSYVMSASGGKISL  811 (1082)
Q Consensus       733 ~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~-dg~~l~~~sdg~i~i  811 (1082)
                      .+.+....|.+.                                                .|-. .|.++++|.-..|+|
T Consensus      1160 ~~~~~r~~~~v~------------------------------------------------dWqQ~~G~Ll~tGd~r~IRI 1191 (1387)
T KOG1517|consen 1160 QLPGARGTGLVV------------------------------------------------DWQQQSGHLLVTGDVRSIRI 1191 (1387)
T ss_pred             cCccCCCCCeee------------------------------------------------ehhhhCCeEEecCCeeEEEE
Confidence            111111112222                                                2222 334444444477999


Q ss_pred             EecCCCeeEEEECC-CCCCeeEEEEecCCCcEEEEEeCCCcEEEEecccc---eeeeeecccccC--EEEEEEeCCCCE-
Q 001415          812 FNMMTFKTMATFMP-PPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVD---EVKSKLKGHSKR--ITGLAFSHALNV-  884 (1082)
Q Consensus       812 wd~~~~~~~~~~~~-~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~---~~~~~l~~h~~~--V~~l~~s~d~~~-  884 (1082)
                      ||...-..+..+.. ....++++.-+-..|.++|+|..||.|++||.+..   ..+...+.|...  |..+.+-+.|-. 
T Consensus      1192 WDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~e 1271 (1387)
T KOG1517|consen 1192 WDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGE 1271 (1387)
T ss_pred             EecccceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcc
Confidence            99998777776653 34457777766657899999999999999998754   356677889887  999999887755 


Q ss_pred             EEEEeCCCcEEEEEcCCcccccceeeeccCCCCCCCCCCcEEEEcCCCcEEEEEecCeEEEEEccCcceeeeeccC----
Q 001415          885 LVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPR----  960 (1082)
Q Consensus       885 l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~~d~~i~iwd~~~~~~~~~~~~~----  960 (1082)
                      |++|+.||.|++||+......  ..+.... +....+..+++..+++...+|+++.+.|+||++. |+.+..+...    
T Consensus      1272 lvSgs~~G~I~~~DlR~~~~e--~~~~iv~-~~~yGs~lTal~VH~hapiiAsGs~q~ikIy~~~-G~~l~~~k~n~~F~ 1347 (1387)
T KOG1517|consen 1272 LVSGSQDGDIQLLDLRMSSKE--TFLTIVA-HWEYGSALTALTVHEHAPIIASGSAQLIKIYSLS-GEQLNIIKYNPGFM 1347 (1387)
T ss_pred             eeeeccCCeEEEEecccCccc--ccceeee-ccccCccceeeeeccCCCeeeecCcceEEEEecC-hhhhcccccCcccc
Confidence            999999999999999984221  1122111 1110124799999999999999777999999984 4444443321    


Q ss_pred             -CCCcceeEEEEcCCCceEEEeecCCcEEEEecCCce
Q 001415          961 -ESSAPITHATFSCDSQLVYACFLDATVCVFSAANLK  996 (1082)
Q Consensus       961 -~h~~~i~~l~~s~dg~~l~t~s~dg~v~vwd~~~~~  996 (1082)
                       ...+.+.+++|.|-.-+||+|+.|.+|.||......
T Consensus      1348 ~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~k~~ 1384 (1387)
T KOG1517|consen 1348 GQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSCEKPR 1384 (1387)
T ss_pred             cCcCCCcceeeecchhHhhhhccCCceEEEeecCCcC
Confidence             124578999999999999999999999999877654

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.70  E-value=2.9e-15  Score=167.45  Aligned_cols=305  Identities=17%  Similarity=0.283  Sum_probs=207.7

Q ss_pred             cCeeEEEecCCCCceEEEEEeCCCcEEEEEccCCceeEEeecCC---cCeEEEeeeecCCceEEEEecCCCcEEEEecCC
Q 001415          466 GGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHE---APVYSVCPHHKENIQFIFSTALDGKIKAWLYDN  542 (1082)
Q Consensus       466 ~~V~~l~fs~dg~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~---~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~  542 (1082)
                      ..-..+.|+|-..  .++++...-.|+|||.+.++.+..|..+.   ..|+.+++-...|..++++|+.||.|+||+--.
T Consensus      1065 ~~pk~~~~hpf~p--~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~ 1142 (1387)
T KOG1517|consen 1065 QPPKTLKFHPFEP--QIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYA 1142 (1387)
T ss_pred             CCCceeeecCCCc--eeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEecccc
Confidence            3556678888777  57888777789999999999988886543   568888887777778999999999999996432


Q ss_pred             CC-ceeeecCCCCceEEEEEccCCCeeeecccccceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEEecCCCCCCc
Q 001415          543 LG-SRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPAS  621 (1082)
Q Consensus       543 ~~-~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i  621 (1082)
                      .. ....+      |+  +|++=... ..+..+.. ..+.|.....+|+++|+-..|+|||.........+..... ..+
T Consensus      1143 ~~~~~~eL------VT--aw~~Ls~~-~~~~r~~~-~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~-t~v 1211 (1387)
T KOG1517|consen 1143 DKWKKPEL------VT--AWSSLSDQ-LPGARGTG-LVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSS-TLV 1211 (1387)
T ss_pred             cccCCcee------EE--eecccccc-CccCCCCC-eeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCC-ccc
Confidence            21 11111      11  11111101 11111112 5677888888899988899999999998887777765433 235


Q ss_pred             CeEEEcC-CCCEEEEEECCCcEEEEEecCCccceeecccccccccccccccCCCCccccCCCCceeeeccCCceeEEEec
Q 001415          622 PRIRFNK-DGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKNGDVRSLADVKPRITEESNDKSKVWKLT  700 (1082)
Q Consensus       622 ~~~~~s~-dg~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~iw~~~  700 (1082)
                      +++.-+- .|+.+++|..||.|++||.+.....                                      ..|..|.- 
T Consensus      1212 TaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~d--------------------------------------s~v~~~R~- 1252 (1387)
T KOG1517|consen 1212 TALSADLVHGNIIAAGFADGSVRVYDRRMAPPD--------------------------------------SLVCVYRE- 1252 (1387)
T ss_pred             eeecccccCCceEEEeecCCceEEeecccCCcc--------------------------------------ccceeecc-
Confidence            5554433 5799999999999999998654210                                      11222221 


Q ss_pred             ccCCCCccccccccCcccccc--eeEEEEccCCc-eeeecccCCeEEEeeccccccCCCCCcccccCccccCCCCcceee
Q 001415          701 ELSEPNQCRSLRLPENLRATK--ISRLIFTNSGN-AILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMT  777 (1082)
Q Consensus       701 ~~~~~~~~~~~~~~~~~~~~~--i~~~~~s~~~~-~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  777 (1082)
                                       |...  |..+.+.+.|- .|++++.+|.|++||+........-.     .+.-|+        
T Consensus      1253 -----------------h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~-----iv~~~~-------- 1302 (1387)
T KOG1517|consen 1253 -----------------HNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLT-----IVAHWE-------- 1302 (1387)
T ss_pred             -----------------cCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccce-----eeeccc--------
Confidence                             3333  77888888664 49999999999999876421000000     000010        


Q ss_pred             cccCCCCCCCCccEEEeecCCCeEEEeeCCeEEEEecCCCeeEEEECC-------CCCCeeEEEEecCCCcEEEEEeCCC
Q 001415          778 NDVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMP-------PPPAATFLAFHPQDNNIIAIGMDDS  850 (1082)
Q Consensus       778 ~~~~~~~~~~~i~~l~~s~dg~~l~~~sdg~i~iwd~~~~~~~~~~~~-------~~~~v~~l~~sp~~~~~lasg~~dg  850 (1082)
                             ..+..+++..+++...+|+|+.+.|+||++.. +.+..++.       ..+.+.|++|+| ..-++|+|+.|.
T Consensus      1303 -------yGs~lTal~VH~hapiiAsGs~q~ikIy~~~G-~~l~~~k~n~~F~~q~~gs~scL~FHP-~~~llAaG~~Ds 1373 (1387)
T KOG1517|consen 1303 -------YGSALTALTVHEHAPIIASGSAQLIKIYSLSG-EQLNIIKYNPGFMGQRIGSVSCLAFHP-HRLLLAAGSADS 1373 (1387)
T ss_pred             -------cCccceeeeeccCCCeeeecCcceEEEEecCh-hhhcccccCcccccCcCCCcceeeecc-hhHhhhhccCCc
Confidence                   12358899999999999999999999999864 33333322       234689999999 888999999999


Q ss_pred             cEEEEecccce
Q 001415          851 SIQIYNVRVDE  861 (1082)
Q Consensus       851 ~v~iwd~~~~~  861 (1082)
                      +|.||.....+
T Consensus      1374 ~V~iYs~~k~~ 1384 (1387)
T KOG1517|consen 1374 TVSIYSCEKPR 1384 (1387)
T ss_pred             eEEEeecCCcC
Confidence            99999876543

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=99.69  E-value=4.9e-16  Score=159.52  Aligned_cols=309  Identities=11%  Similarity=0.143  Sum_probs=229.1

Q ss_pred             eecCCCCCceEEEEecCCCeEEEEEcCCCcEEEEEccccceeeeeceeeeccCCCCcccccccccCCCCceeEEEEec--
Q 001415          353 RTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP--  430 (1082)
Q Consensus       353 ~~~~h~~~v~~~~~spdg~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~sp--  430 (1082)
                      ++-+|.+.|..|.|...|. +|++|+.|..|.+||+..+.....                  ...+|...|....|-|  
T Consensus       137 kL~~H~GcVntV~FN~~Gd-~l~SgSDD~~vv~WdW~~~~~~l~------------------f~SGH~~NvfQaKFiP~s  197 (559)
T KOG1334|consen  137 KLNKHKGCVNTVHFNQRGD-VLASGSDDLQVVVWDWVSGSPKLS------------------FESGHCNNVFQAKFIPFS  197 (559)
T ss_pred             cccCCCCccceeeecccCc-eeeccCccceEEeehhhccCcccc------------------cccccccchhhhhccCCC
Confidence            4445999999999999999 599999999999999998876654                  3678999999999988  


Q ss_pred             CCCeEEEEeCCCeEEEEEccCCceeeEEEEeeccccCeeEEEecCCCCceEEEEEeCCCcEEEEEccCCceeEEe---ec
Q 001415          431 DGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIF---EG  507 (1082)
Q Consensus       431 dg~~las~~~d~~v~iwd~~~~~~~~~~~~~~~h~~~V~~l~fs~dg~~~~l~s~s~d~~i~vwd~~~~~~~~~~---~~  507 (1082)
                      +.+.+++++.||.|++=.+.....+.....+..|.++|.-++.-|+..+ -|.+++.|+.+.-.|+.++..-..+   ..
T Consensus       198 ~d~ti~~~s~dgqvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~-~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~  276 (559)
T KOG1334|consen  198 GDRTIVTSSRDGQVRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPK-PFLSCGEDAVVFHIDLRQDVPAEKFVCREA  276 (559)
T ss_pred             CCcCceeccccCceeeeeeccccceecceecccccCccceeeecCCCCC-cccccccccceeeeeeccCCccceeeeecc
Confidence            6678999999999999877655444444467789999999999999887 7899999999999999887554333   22


Q ss_pred             CCc---CeEEEeeeecCCceEEEEecCCCcEEEEecCCCCceeeecCCCCceEEEEEccCCCeeeecccccceeEEEecC
Q 001415          508 HEA---PVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDT  584 (1082)
Q Consensus       508 h~~---~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~i~~~~~~~  584 (1082)
                      +..   ...+++..|... ..+++++.|..+++||.+.....-..    ..+  -.|.|+  .+. ....-.|++++|+.
T Consensus       277 ~~~~~v~L~~Ia~~P~nt-~~faVgG~dqf~RvYD~R~~~~e~~n----~~~--~~f~p~--hl~-~d~~v~ITgl~Ysh  346 (559)
T KOG1334|consen  277 DEKERVGLYTIAVDPRNT-NEFAVGGSDQFARVYDQRRIDKEENN----GVL--DKFCPH--HLV-EDDPVNITGLVYSH  346 (559)
T ss_pred             CCccceeeeeEecCCCCc-cccccCChhhhhhhhcccchhhcccc----chh--hhcCCc--ccc-ccCcccceeEEecC
Confidence            333   456777776554 58999999999999998753222100    000  012221  111 12333677777877


Q ss_pred             CCCEEEEEeCCCeEEEEECCC--c----------ceEEE-EecCCCCCCcCeEEE-cCCCCEEEEEECCCcEEEEEecCC
Q 001415          585 TKNRFLAAGDDFSIKFWDMDS--V----------QLLTS-IDADGGLPASPRIRF-NKDGCLLAVSTNDNGIKILATSDG  650 (1082)
Q Consensus       585 ~~~~l~~~~~dg~i~iwd~~~--~----------~~~~~-~~~~~~~~~i~~~~~-s~dg~~l~~~~~dg~i~iwd~~~~  650 (1082)
                      ++.-++++..|-.|+++.-.-  |          ..+.. +++|.....|..+-| .|...++++|+.=|.|.||+-.++
T Consensus       347 ~~sElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~  426 (559)
T KOG1334|consen  347 DGSELLASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTG  426 (559)
T ss_pred             CccceeeeecccceEEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchh
Confidence            777788888888899985432  2          22233 677777667888776 578899999999999999999888


Q ss_pred             ccceeecccccccccccccccCCCCccccCCCCceeeeccCCceeEEEecc
Q 001415          651 IRLLRTFENLAYDASRTSENSKNGDVRSLADVKPRITEESNDKSKVWKLTE  701 (1082)
Q Consensus       651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~iw~~~~  701 (1082)
                       +.++.+.+....+.  ++.-       .|--..|++++-|..|+||....
T Consensus       427 -eii~~MegDr~VVN--CLEp-------HP~~PvLAsSGid~DVKIWTP~~  467 (559)
T KOG1334|consen  427 -EIIRFMEGDRHVVN--CLEP-------HPHLPVLASSGIDHDVKIWTPLT  467 (559)
T ss_pred             -HHHHHhhcccceEe--ccCC-------CCCCchhhccCCccceeeecCCc
Confidence             67777766655332  4444       56677899999999999998744

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.67  E-value=1.2e-14  Score=161.65  Aligned_cols=285  Identities=15%  Similarity=0.157  Sum_probs=189.3

Q ss_pred             CeEEEEEccCCceeeEEEEeeccccCeeEEEecCCCCceEEEEEeCCCcEEEEEccCCce--eEE----eecCCcCeEEE
Q 001415          442 HIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAK--QYI----FEGHEAPVYSV  515 (1082)
Q Consensus       442 ~~v~iwd~~~~~~~~~~~~~~~h~~~V~~l~fs~dg~~~~l~s~s~d~~i~vwd~~~~~~--~~~----~~~h~~~v~~~  515 (1082)
                      +.+.||++.......  ..+ .-...|.++.|+|.... +++.|..+|.|.+||+..+..  ...    ...|..+++.+
T Consensus       222 ~~~~vW~~~~p~~Pe--~~~-~~~s~v~~~~f~p~~p~-ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~v  297 (555)
T KOG1587|consen  222 GVLLVWSLKNPNTPE--LVL-ESPSEVTCLKFCPFDPN-LLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAV  297 (555)
T ss_pred             ceEEEEecCCCCCce--EEE-ecCCceeEEEeccCCcc-eEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEE
Confidence            479999999873332  122 34568999999998887 899999999999999987655  222    23578888888


Q ss_pred             eeeecCCceEEEEecCCCcEEEEecCCCCceeeecCCCCceEEEEEccCCCeeeecccccceeEEEecCCCCEEEEEeCC
Q 001415          516 CPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDD  595 (1082)
Q Consensus       516 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d  595 (1082)
                      .|..+..+.-+++++.||.|..|+++.........                                      +. ..  
T Consensus       298 vW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~--------------------------------------~~-~~--  336 (555)
T KOG1587|consen  298 VWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGL--------------------------------------LL-ES--  336 (555)
T ss_pred             EEeccCCCCceEEEecCCcEeeeeccccccchhhc--------------------------------------cc-cc--
Confidence            88776655567888888888888665321110000                                      00 00  


Q ss_pred             CeEEEEECCCcceEEEEecCCCCCCcCeEEEcC-CCCEEEEEECCCcEEEEEecCCccceeecccccccccccccccCCC
Q 001415          596 FSIKFWDMDSVQLLTSIDADGGLPASPRIRFNK-DGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKNG  674 (1082)
Q Consensus       596 g~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~-dg~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  674 (1082)
                       ..     ..+   ...   .....+++++|.+ +-..+++|+..|.|..-..........                   
T Consensus       337 -~~-----~~~---~~~---~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~-------------------  385 (555)
T KOG1587|consen  337 -KK-----HKG---QQS---SKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPE-------------------  385 (555)
T ss_pred             -cc-----ccc---ccc---ccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCccccc-------------------
Confidence             00     000   000   1122467888887 556788888888875422211100000                   


Q ss_pred             CccccCCCCceeeeccCCceeEEEecccCCCCccccccccCcccccceeEEEEccCCceeeecccCCeEEEeeccccccC
Q 001415          675 DVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERN  754 (1082)
Q Consensus       675 ~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~  754 (1082)
                                                                        +.|.+..                       
T Consensus       386 --------------------------------------------------~~~~~~~-----------------------  392 (555)
T KOG1587|consen  386 --------------------------------------------------VSYKGHS-----------------------  392 (555)
T ss_pred             --------------------------------------------------ccccccc-----------------------
Confidence                                                              0000000                       


Q ss_pred             CCCCcccccCccccCCCCcceeecccCCCCCCCCccEEEeecCCC-eEEEeeCCeEEEEecC-CCeeEEEECCCCCCeeE
Q 001415          755 SSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDS-YVMSASGGKISLFNMM-TFKTMATFMPPPPAATF  832 (1082)
Q Consensus       755 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~-~l~~~sdg~i~iwd~~-~~~~~~~~~~~~~~v~~  832 (1082)
                                                ....|.+.|+++.++|=+. .+.+++|.+++||... ...++..+..+...+++
T Consensus       393 --------------------------~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~~v~~  446 (555)
T KOG1587|consen  393 --------------------------TFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPDYVTD  446 (555)
T ss_pred             --------------------------cccccCcceEeeecCCCccceeeeeccceeEeccccCCCCcchhhhhccceeee
Confidence                                      0001566677777776554 4455568888999887 66677777777778999


Q ss_pred             EEEecCCCcEEEEEeCCCcEEEEecccc--eeeeeecccccCEEEEEEeCCCCEEEEEeCCCcEEEEEcCC
Q 001415          833 LAFHPQDNNIIAIGMDDSSIQIYNVRVD--EVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDG  901 (1082)
Q Consensus       833 l~~sp~~~~~lasg~~dg~v~iwd~~~~--~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~  901 (1082)
                      ++|||....++|++..||.|.+||+...  ..+...+-+....+.+.|+++|+.|+.|+..|++.+|++..
T Consensus       447 vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~  517 (555)
T KOG1587|consen  447 VAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPVLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILKLSE  517 (555)
T ss_pred             eEEcCcCceEEEEEcCCCceehhhhhccccCCcccccccccccceeecCCCCcEEEEecCCCcEEEEEcCc
Confidence            9999977789999999999999999754  44455555567778888999999999999999999999975

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.67  E-value=1e-14  Score=142.26  Aligned_cols=251  Identities=14%  Similarity=0.146  Sum_probs=175.7

Q ss_pred             CCCceEEEEecCCCeEEEEEcCCCcEEEEEccccceeeeeceeeeccCCCCcccccccccCCCCceeEEEEecCCCeEEE
Q 001415          358 GSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGV  437 (1082)
Q Consensus       358 ~~~v~~~~~spdg~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las  437 (1082)
                      ..+|+|.+|++|++ .+|++.....|.||.....+.-.                ....+..|...|++++|+|....|++
T Consensus        10 ~~pitchAwn~drt-~iAv~~~~~evhiy~~~~~~~w~----------------~~htls~Hd~~vtgvdWap~snrIvt   72 (361)
T KOG1523|consen   10 LEPITCHAWNSDRT-QIAVSPNNHEVHIYSMLGADLWE----------------PAHTLSEHDKIVTGVDWAPKSNRIVT   72 (361)
T ss_pred             cCceeeeeecCCCc-eEEeccCCceEEEEEecCCCCce----------------eceehhhhCcceeEEeecCCCCceeE
Confidence            47899999999999 59999999999999987655211                12258899999999999999999999


Q ss_pred             EeCCCeEEEEEccCCceeeEEEEeeccccCeeEEEecCCCCceEEEEEeCCCcEEEEEccCCcee----EEeecCCcCeE
Q 001415          438 AYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQ----YIFEGHEAPVY  513 (1082)
Q Consensus       438 ~~~d~~v~iwd~~~~~~~~~~~~~~~h~~~V~~l~fs~dg~~~~l~s~s~d~~i~vwd~~~~~~~----~~~~~h~~~v~  513 (1082)
                      |+.|..-++|....+..-++...+..|...++++.|+|.+.  .+|+||..+.|.||-.+...-=    +.-+.+...|.
T Consensus        73 cs~drnayVw~~~~~~~WkptlvLlRiNrAAt~V~WsP~en--kFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~  150 (361)
T KOG1523|consen   73 CSHDRNAYVWTQPSGGTWKPTLVLLRINRAATCVKWSPKEN--KFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVT  150 (361)
T ss_pred             ccCCCCccccccCCCCeeccceeEEEeccceeeEeecCcCc--eEEeccCccEEEEEEEecccceehhhhhCCcccccee
Confidence            99999999999966655666667888999999999999999  6999999999999987654321    12234667899


Q ss_pred             EEeeeecCCceEEEEecCCCcEEEEecCCCCceeeecCCCCceEEEEEccCCCeeeec-ccccceeEEEecCCCCEEEEE
Q 001415          514 SVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQG-FRKRSLGVVQFDTTKNRFLAA  592 (1082)
Q Consensus       514 ~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~-~~~~~i~~~~~~~~~~~l~~~  592 (1082)
                      ++.|++++  -+|++|+.|+..+++..--.... .-.....+-..+   |-|...... ...+-+..+.|+|+|+.|+-.
T Consensus       151 sldWhpnn--VLlaaGs~D~k~rVfSayIK~Vd-ekpap~pWgsk~---PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv  224 (361)
T KOG1523|consen  151 SLDWHPNN--VLLAAGSTDGKCRVFSAYIKGVD-EKPAPTPWGSKM---PFGQLMSEASSSGGWVHGVLFSPSGNRLAWV  224 (361)
T ss_pred             eeeccCCc--ceecccccCcceeEEEEeeeccc-cCCCCCCCccCC---cHHHHHHhhccCCCceeeeEeCCCCCEeeEe
Confidence            99999766  68999999999999853210000 000000000000   001110111 233456677777888899999


Q ss_pred             eCCCeEEEEECCCcc-eEEEEecCCCCCCcCeEEEcCCCCEEEE
Q 001415          593 GDDFSIKFWDMDSVQ-LLTSIDADGGLPASPRIRFNKDGCLLAV  635 (1082)
Q Consensus       593 ~~dg~i~iwd~~~~~-~~~~~~~~~~~~~i~~~~~s~dg~~l~~  635 (1082)
                      +.|..+.+-|..... .+.......  -+..++.|-.+...++.
T Consensus       225 ~Hds~v~~~da~~p~~~v~~~~~~~--lP~ls~~~ise~~vv~a  266 (361)
T KOG1523|consen  225 GHDSTVSFVDAAGPSERVQSVATAQ--LPLLSVSWISENSVVAA  266 (361)
T ss_pred             cCCCceEEeecCCCchhccchhhcc--CCceeeEeecCCceeec
Confidence            999999999876654 233332222  25666777665544433

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.67  E-value=2.5e-14  Score=133.66  Aligned_cols=251  Identities=16%  Similarity=0.214  Sum_probs=172.0

Q ss_pred             CceEEEEecCCCeEEEEEcCCCcEEEEEccccceeeeeceeeeccCCCCcccccc--cccCCCCceeEEEEecCCCeEEE
Q 001415          360 SPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAA--LVKDPGVSVNRVIWSPDGSLFGV  437 (1082)
Q Consensus       360 ~v~~~~~spdg~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~--~~~~h~~~V~~l~~spdg~~las  437 (1082)
                      .|.+-++||.+++ |++|..+|.|.+..+..-..-.           ...+.+..  ...+|.++|+.++|.  ..+|++
T Consensus        12 tvf~qa~sp~~~~-l~agn~~G~iav~sl~sl~s~s-----------a~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls   77 (325)
T KOG0649|consen   12 TVFAQAISPSKQY-LFAGNLFGDIAVLSLKSLDSGS-----------AEPPGKLKIVPEQAHDGPIYYLAFH--DDFLLS   77 (325)
T ss_pred             HHHHHhhCCcceE-EEEecCCCeEEEEEehhhhccc-----------cCCCCCcceeeccccCCCeeeeeee--hhheee
Confidence            3556689999995 9999999999999885421110           01111111  247999999999998  456777


Q ss_pred             EeCCCeEEEEEccCCce---eeEEE--Eeeccc-----cCeeEEEecCCCCceEEEEEeCCCcEEEEEccCCceeEEeec
Q 001415          438 AYSRHIVQIYSYHGGDE---VRQHL--EIDAHV-----GGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEG  507 (1082)
Q Consensus       438 ~~~d~~v~iwd~~~~~~---~~~~~--~~~~h~-----~~V~~l~fs~dg~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~  507 (1082)
                      |+ ||.|+=|.+.....   .+...  ....|.     ..|+++-..|....  ++.++.|+.++-||+++|+..++++|
T Consensus        78 ~g-dG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enS--i~~AgGD~~~y~~dlE~G~i~r~~rG  154 (325)
T KOG0649|consen   78 GG-DGLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENS--ILFAGGDGVIYQVDLEDGRIQREYRG  154 (325)
T ss_pred             cc-CceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCc--EEEecCCeEEEEEEecCCEEEEEEcC
Confidence            75 59999998764332   01000  011222     35889999988774  56666899999999999999999999


Q ss_pred             CCcCeEEEeeeecCCceEEEEecCCCcEEEEecCCCCceeeecCCCCceEEEEEccCCCeeeecccccceeEEEecCCCC
Q 001415          508 HEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKN  587 (1082)
Q Consensus       508 h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~i~~~~~~~~~~  587 (1082)
                      |++-|.++.--. .+ ..+++|+.||++|+||.++.+....+....++           ..+..+...-|.+++  -+..
T Consensus       155 HtDYvH~vv~R~-~~-~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~-----------~~lRp~~g~wigala--~~ed  219 (325)
T KOG0649|consen  155 HTDYVHSVVGRN-AN-GQILSGAEDGTVRVWDTKTQKHVSMIEPYKNP-----------NLLRPDWGKWIGALA--VNED  219 (325)
T ss_pred             Ccceeeeeeecc-cC-cceeecCCCccEEEEeccccceeEEeccccCh-----------hhcCcccCceeEEEe--ccCc
Confidence            999999987522 22 47999999999999999998877655433221           111111122233333  3344


Q ss_pred             EEEEEeCCCeEEEEECCCcceEEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEec
Q 001415          588 RFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATS  648 (1082)
Q Consensus       588 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~iwd~~  648 (1082)
                      ++++|+. ..+.+|.++..++...+....+   +..+.|..  +.+++++..+.+.-|.+.
T Consensus       220 WlvCGgG-p~lslwhLrsse~t~vfpipa~---v~~v~F~~--d~vl~~G~g~~v~~~~l~  274 (325)
T KOG0649|consen  220 WLVCGGG-PKLSLWHLRSSESTCVFPIPAR---VHLVDFVD--DCVLIGGEGNHVQSYTLN  274 (325)
T ss_pred             eEEecCC-CceeEEeccCCCceEEEecccc---eeEeeeec--ceEEEeccccceeeeeec
Confidence            7777654 5689999999999888876654   66677754  467777777788888764

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.67  E-value=1.1e-15  Score=160.26  Aligned_cols=246  Identities=15%  Similarity=0.213  Sum_probs=184.7

Q ss_pred             CCCCccEEEeecCCCeEEEee-CCeEEEEecC--------CCeeEEEECCCCCCeeEEEEecCCCcEEEEEeCCCcEEEE
Q 001415          785 PEEAVPCFALSKNDSYVMSAS-GGKISLFNMM--------TFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIY  855 (1082)
Q Consensus       785 ~~~~i~~l~~s~dg~~l~~~s-dg~i~iwd~~--------~~~~~~~~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iw  855 (1082)
                      |...|+.++|.+-...|++++ +|.|.+|+++        ..+++.++++|.++|.|+++++ .+..+++|+.||+|+.|
T Consensus       293 ~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~-n~~~~ysgg~Dg~I~~w  371 (577)
T KOG0642|consen  293 HDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPS-NGEHCYSGGIDGTIRCW  371 (577)
T ss_pred             chhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecC-CceEEEeeccCceeeee
Confidence            788899999999999999998 7999999993        2367889999999999999999 99999999999999999


Q ss_pred             ecccc----------eeeeeecccccCEEEEEEeCCCCEEEEEeCCCcEEEEEcCCcccccceeeeccCCCCCCCCCCcE
Q 001415          856 NVRVD----------EVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTR  925 (1082)
Q Consensus       856 d~~~~----------~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~  925 (1082)
                      ++...          .....+.||.+.|+.+++|+....|++++.||+++.|+......   ........+    +....
T Consensus       372 ~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~---~~f~~~~e~----g~Pls  444 (577)
T KOG0642|consen  372 NLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP---CTFGEPKEH----GYPLS  444 (577)
T ss_pred             ccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCc---cccCCcccc----CCcce
Confidence            66421          24467889999999999999999999999999999999877443   111111111    22355


Q ss_pred             EEEcCCC-cEEEE-EecCeEEEEEccCcceeeeeccCCC-----CcceeEEEEcCCCceEEEeecCCcEEEEecCCceee
Q 001415          926 VQFHQDQ-IHFLV-VHETQLAIFETTKLECVKQWVPRES-----SAPITHATFSCDSQLVYACFLDATVCVFSAANLKLR  998 (1082)
Q Consensus       926 ~~fspdg-~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~h-----~~~i~~l~~s~dg~~l~t~s~dg~v~vwd~~~~~~~  998 (1082)
                      +.|-... ...++ ..-+.--+++...+..+..+....-     ...+..+.+.|.+.+.+++.+|+.|+++|..+++++
T Consensus       445 vd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l  524 (577)
T KOG0642|consen  445 VDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKIL  524 (577)
T ss_pred             EeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceecccccccccc
Confidence            5554332 11222 1223333444444444444432211     245778889999999999999999999999999998


Q ss_pred             eeeCCCeecCCCCCCCCceeeEEEEeCCCCCeEEEEecCCcEEEEccCCCC
Q 001415          999 CRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESE 1049 (1082)
Q Consensus       999 ~~~~~~~~~~~gh~~~~v~~~~~~~~~~d~~~l~s~~~dg~v~vW~~~~~~ 1049 (1082)
                      ....          .+.+...++++.|+ |-+|++++.||.+++|.+....
T Consensus       525 ~s~~----------a~~~svtslai~~n-g~~l~s~s~d~sv~l~kld~k~  564 (577)
T KOG0642|consen  525 HSMV----------AHKDSVTSLAIDPN-GPYLMSGSHDGSVRLWKLDVKT  564 (577)
T ss_pred             hhee----------eccceecceeecCC-CceEEeecCCceeehhhccchh
Confidence            7654          22244557888884 8899999999999999986654

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.66  E-value=1.4e-15  Score=154.47  Aligned_cols=201  Identities=16%  Similarity=0.185  Sum_probs=152.9

Q ss_pred             eEEEEecCCCcEEEEEeCCCcEEEEecccceeeeeecccccCEEEEEEeCCCCEEEEEeCCCcEEEEEcCCcccccceee
Q 001415          831 TFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFL  910 (1082)
Q Consensus       831 ~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~  910 (1082)
                      .+++|+. ++..|++|+.||.+|||+..+...+.....|.+.|.++.|||||++|++.+.| ..+||+++++......  
T Consensus       148 k~vaf~~-~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~--  223 (398)
T KOG0771|consen  148 KVVAFNG-DGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARK--  223 (398)
T ss_pred             eEEEEcC-CCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhc--
Confidence            7799999 89999999999999999988888888888899999999999999999999999 7999999997432211  


Q ss_pred             eccCCCCCCCCCCcEEEEcCCC---cE-EEE-E-ecCeEEEEEccCcce---eeeeccCCCCcceeEEEEcCCCceEEEe
Q 001415          911 QIPTGRTPTAQSDTRVQFHQDQ---IH-FLV-V-HETQLAIFETTKLEC---VKQWVPRESSAPITHATFSCDSQLVYAC  981 (1082)
Q Consensus       911 ~~~~~~~~~~~~v~~~~fspdg---~~-l~~-~-~d~~i~iwd~~~~~~---~~~~~~~~h~~~i~~l~~s~dg~~l~t~  981 (1082)
                       .+.+..   .....+.|+.|+   .+ +++ . .-+.|..||+.....   .+....-.-...|++++.|+||+++|.|
T Consensus       224 -t~~~k~---~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlG  299 (398)
T KOG0771|consen  224 -TPFSKD---EMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALG  299 (398)
T ss_pred             -CCcccc---hhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEe
Confidence             111111   456788999887   33 333 2 335666666533221   1111111113579999999999999999


Q ss_pred             ecCCcEEEEecCCceeeeeeCCCeecCCCCCCCCceeeEEEEeCCCCCeEEEEecCCcEEEEccCCCC
Q 001415          982 FLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESE 1049 (1082)
Q Consensus       982 s~dg~v~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~~~~~~~d~~~l~s~~~dg~v~vW~~~~~~ 1049 (1082)
                      +.||.|.|++..+.+.+..++      ..   |...++.+.|+| |.+.+++.+.|.+..|..+.-..
T Consensus       300 T~dGsVai~~~~~lq~~~~vk------~a---H~~~VT~ltF~P-dsr~~~svSs~~~~~v~~l~vd~  357 (398)
T KOG0771|consen  300 TMDGSVAIYDAKSLQRLQYVK------EA---HLGFVTGLTFSP-DSRYLASVSSDNEAAVTKLAVDK  357 (398)
T ss_pred             ccCCcEEEEEeceeeeeEeeh------hh---heeeeeeEEEcC-CcCcccccccCCceeEEEEeecc
Confidence            999999999999888886554      33   334667999999 68899999999999998887633

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.65  E-value=8.8e-15  Score=142.74  Aligned_cols=213  Identities=15%  Similarity=0.185  Sum_probs=165.1

Q ss_pred             CCceeEEEEecCCCeEEEEeCCCeEEEEEccCCceeeEEEEeeccccCeeEEEecCCCCceEEEEEeCCCcEEEEEccC-
Q 001415          420 GVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATN-  498 (1082)
Q Consensus       420 ~~~V~~l~~spdg~~las~~~d~~v~iwd~~~~~~~~~~~~~~~h~~~V~~l~fs~dg~~~~l~s~s~d~~i~vwd~~~-  498 (1082)
                      ..+|+|.||++|+..+|++-....|.||.....+......++..|...|+.+.|+|...  .|++|+.|..-+||.... 
T Consensus        10 ~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~sn--rIvtcs~drnayVw~~~~~   87 (361)
T KOG1523|consen   10 LEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSN--RIVTCSHDRNAYVWTQPSG   87 (361)
T ss_pred             cCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCC--ceeEccCCCCccccccCCC
Confidence            45999999999999999999999999999998886777779999999999999999998  699999999999999843 


Q ss_pred             C--ceeEEeecCCcCeEEEeeeecCCceEEEEecCCCcEEEEecCCCCceeeecCCCCceEEEEEccCCCeeeecccccc
Q 001415          499 G--AKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRS  576 (1082)
Q Consensus       499 ~--~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~  576 (1082)
                      +  ++.-.+..+....+++.|+|.+  +.+++|+..+.|.+|-++....=........++                 ...
T Consensus        88 ~~WkptlvLlRiNrAAt~V~WsP~e--nkFAVgSgar~isVcy~E~ENdWWVsKhikkPi-----------------rSt  148 (361)
T KOG1523|consen   88 GTWKPTLVLLRINRAATCVKWSPKE--NKFAVGSGARLISVCYYEQENDWWVSKHIKKPI-----------------RST  148 (361)
T ss_pred             CeeccceeEEEeccceeeEeecCcC--ceEEeccCccEEEEEEEecccceehhhhhCCcc-----------------ccc
Confidence            3  3344556688999999998877  589999999999999776533221111111111                 125


Q ss_pred             eeEEEecCCCCEEEEEeCCCeEEEEECC-----C-------------cceEEEEecCCCCCCcCeEEEcCCCCEEEEEEC
Q 001415          577 LGVVQFDTTKNRFLAAGDDFSIKFWDMD-----S-------------VQLLTSIDADGGLPASPRIRFNKDGCLLAVSTN  638 (1082)
Q Consensus       577 i~~~~~~~~~~~l~~~~~dg~i~iwd~~-----~-------------~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~  638 (1082)
                      +.+++|+|++-.+++|+.|+..||+..-     +             |+++..+..  ....+..+.|+|+|..|+-.+.
T Consensus       149 v~sldWhpnnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~--~ggwvh~v~fs~sG~~lawv~H  226 (361)
T KOG1523|consen  149 VTSLDWHPNNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASS--SGGWVHGVLFSPSGNRLAWVGH  226 (361)
T ss_pred             eeeeeccCCcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhcc--CCCceeeeEeCCCCCEeeEecC
Confidence            6677777777789999999999998641     1             223333332  2347899999999999999999


Q ss_pred             CCcEEEEEecCCcccee
Q 001415          639 DNGIKILATSDGIRLLR  655 (1082)
Q Consensus       639 dg~i~iwd~~~~~~~~~  655 (1082)
                      |+.+.+-|.....+...
T Consensus       227 ds~v~~~da~~p~~~v~  243 (361)
T KOG1523|consen  227 DSTVSFVDAAGPSERVQ  243 (361)
T ss_pred             CCceEEeecCCCchhcc
Confidence            99999999876643333

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=99.65  E-value=2.9e-12  Score=144.87  Aligned_cols=198  Identities=14%  Similarity=0.208  Sum_probs=152.7

Q ss_pred             CCceEEEEecCCCeEEEEEcCCCcEEEEEccccceeeeeceeeeccCCCCcccccccccCCCC---ceeEEEEecCCCeE
Q 001415          359 SSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGV---SVNRVIWSPDGSLF  435 (1082)
Q Consensus       359 ~~v~~~~~spdg~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~---~V~~l~~spdg~~l  435 (1082)
                      +.|....+.-+.+ .++.++.+..+.|||+..+..+..                  +......   ...-+-++++.-++
T Consensus        88 ~wi~g~~l~~e~k-~i~l~~~~ns~~i~d~~~~~~~~~------------------i~~~er~~l~~~~~~g~s~~~~~i  148 (967)
T KOG0974|consen   88 DWIFGAKLFEENK-KIALVTSRNSLLIRDSKNSSVLSK------------------IQSDERCTLYSSLIIGDSAEELYI  148 (967)
T ss_pred             ccccccchhhhcc-eEEEEEcCceEEEEecccCceehh------------------cCCCceEEEEeEEEEeccCcEEEE
Confidence            3344455666666 488889999999999987766542                  0111111   12224567788899


Q ss_pred             EEEeCCCeEEEEEccCCceeeEEEEeeccccCeeEEEecCCCCceEEEEEeCCCcEEEEEccCCceeE-EeecCCcCeEE
Q 001415          436 GVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQY-IFEGHEAPVYS  514 (1082)
Q Consensus       436 as~~~d~~v~iwd~~~~~~~~~~~~~~~h~~~V~~l~fs~dg~~~~l~s~s~d~~i~vwd~~~~~~~~-~~~~h~~~v~~  514 (1082)
                      ++|+.-+.|.+|+........   .+.||.+.|.++.|+.||.  ++++.|+|.++|+|++++++... +.-+|..+|+.
T Consensus       149 ~~gsv~~~iivW~~~~dn~p~---~l~GHeG~iF~i~~s~dg~--~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~  223 (967)
T KOG0974|consen  149 ASGSVFGEIIVWKPHEDNKPI---RLKGHEGSIFSIVTSLDGR--YIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWA  223 (967)
T ss_pred             EeccccccEEEEeccccCCcc---eecccCCceEEEEEccCCc--EEEEEecCcceeeeecccccccCcccccccceeEE
Confidence            999999999999998332221   5889999999999999999  89999999999999999998876 77789999999


Q ss_pred             EeeeecCCceEEEEecCCCcEEEEecCCCCceeeecCCCCceEEEEEccCCCeeeecccccceeEEEecCCCCEEEEEeC
Q 001415          515 VCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGD  594 (1082)
Q Consensus       515 ~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~  594 (1082)
                      ++|++.    .+++++.|-+.++|+......                     ..+.+|..+.+..++.++.....++++.
T Consensus       224 ~~~~~n----~i~t~gedctcrvW~~~~~~l---------------------~~y~~h~g~~iw~~~~~~~~~~~vT~g~  278 (967)
T KOG0974|consen  224 CCFLPN----RIITVGEDCTCRVWGVNGTQL---------------------EVYDEHSGKGIWKIAVPIGVIIKVTGGN  278 (967)
T ss_pred             EEeccc----eeEEeccceEEEEEeccccee---------------------hhhhhhhhcceeEEEEcCCceEEEeecc
Confidence            999764    799999999999996643211                     1445566667777777777778999999


Q ss_pred             CCeEEEEECCC
Q 001415          595 DFSIKFWDMDS  605 (1082)
Q Consensus       595 dg~i~iwd~~~  605 (1082)
                      |+.+++|++..
T Consensus       279 Ds~lk~~~l~~  289 (967)
T KOG0974|consen  279 DSTLKLWDLNG  289 (967)
T ss_pred             Ccchhhhhhhc
Confidence            99999998754

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.64  E-value=1.8e-14  Score=138.30  Aligned_cols=249  Identities=16%  Similarity=0.249  Sum_probs=181.9

Q ss_pred             eecCCCCCceEEEEecCCC----eEEEEEcCCCcEEEEEccccceeeeeceeeeccCCCCcccccccccCCCCceeEEEE
Q 001415          353 RTLNQGSSPMSMDFHPVQQ----TLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIW  428 (1082)
Q Consensus       353 ~~~~h~~~v~~~~~spdg~----~llasgs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~  428 (1082)
                      ..+.|.-+++.+.|.||.+    .|||+.  +..+++|.+...+.....          ...+....-..+.+++++..|
T Consensus        91 a~fd~~YP~tK~~wiPd~~g~~pdlLATs--~D~LRlWri~~ee~~~~~----------~~~L~~~kns~~~aPlTSFDW  158 (364)
T KOG0290|consen   91 ANFDHPYPVTKLMWIPDSKGVYPDLLATS--SDFLRLWRIGDEESRVEL----------QSVLNNNKNSEFCAPLTSFDW  158 (364)
T ss_pred             CCCCCCCCccceEecCCccccCcchhhcc--cCeEEEEeccCcCCceeh----------hhhhccCcccccCCccccccc
Confidence            3467999999999999983    357654  568999999743221110          001111123466789999999


Q ss_pred             ec-CCCeEEEEeCCCeEEEEEccCCceeeEEEEeeccccCeeEEEecCCCCceEEEEEeCCCcEEEEEccCCceeEEe--
Q 001415          429 SP-DGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIF--  505 (1082)
Q Consensus       429 sp-dg~~las~~~d~~v~iwd~~~~~~~~~~~~~~~h~~~V~~l~fs~dg~~~~l~s~s~d~~i~vwd~~~~~~~~~~--  505 (1082)
                      +. |-++|.+++-|-+..|||++++..-.....+-.|...|..++|..++.. ++|+.|.||++|++|++..+.-..+  
T Consensus       159 ne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~-~FASvgaDGSvRmFDLR~leHSTIIYE  237 (364)
T KOG0290|consen  159 NEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRD-VFASVGADGSVRMFDLRSLEHSTIIYE  237 (364)
T ss_pred             ccCCcceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccc-eEEEecCCCcEEEEEecccccceEEec
Confidence            98 8899999999999999999997442223357899999999999998777 8999999999999999875543332  


Q ss_pred             -ecCCcCeEEEeeeecCCceEEEEecCCC-cEEEEecCCCC-ceeeecCCCCceEEEEEccCCCeeeecccccceeEEEe
Q 001415          506 -EGHEAPVYSVCPHHKENIQFIFSTALDG-KIKAWLYDNLG-SRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQF  582 (1082)
Q Consensus       506 -~~h~~~v~~~~~~~~~~~~~l~s~~~dg-~i~iwd~~~~~-~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~i~~~~~  582 (1082)
                       .....+...++|+.. +-+++++-..|. .|.+-|++... ....+..|...|..++|.|...                
T Consensus       238 ~p~~~~pLlRLswnkq-DpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~----------------  300 (364)
T KOG0290|consen  238 DPSPSTPLLRLSWNKQ-DPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSS----------------  300 (364)
T ss_pred             CCCCCCcceeeccCcC-CchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCC----------------
Confidence             222456777888654 346788777664 58899998754 4457888888888888888765                


Q ss_pred             cCCCCEEEEEeCCCeEEEEECCCcce------EEEEecCCCCCCcCeEEEcC-CCCEEEEEEC
Q 001415          583 DTTKNRFLAAGDDFSIKFWDMDSVQL------LTSIDADGGLPASPRIRFNK-DGCLLAVSTN  638 (1082)
Q Consensus       583 ~~~~~~l~~~~~dg~i~iwd~~~~~~------~~~~~~~~~~~~i~~~~~s~-dg~~l~~~~~  638 (1082)
                          ..+.++|.|..+.+||+.+.-.      +..+.   ...+|..+.|++ .+.+++++..
T Consensus       301 ----~hictaGDD~qaliWDl~q~~~~~~~dPilay~---a~~EVNqi~Ws~~~~Dwiai~~~  356 (364)
T KOG0290|consen  301 ----SHICTAGDDCQALIWDLQQMPRENGEDPILAYT---AGGEVNQIQWSSSQPDWIAICFG  356 (364)
T ss_pred             ----ceeeecCCcceEEEEecccccccCCCCchhhhh---ccceeeeeeecccCCCEEEEEec
Confidence                3789999999999999975322      22222   223688999997 6778887764

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=99.64  E-value=3.9e-12  Score=143.91  Aligned_cols=150  Identities=17%  Similarity=0.294  Sum_probs=123.7

Q ss_pred             EEEecCCCeEEEEEcCCCcEEEEEccccceeeeeceeeeccCCCCcccccccccCCCCceeEEEEecCCCeEEEEeCCCe
Q 001415          364 MDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHI  443 (1082)
Q Consensus       364 ~~~spdg~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d~~  443 (1082)
                      +-++++.-| +++|+.-+.|++|+........                   .+.+|.+.|.++.||-||+++|+.+.|.+
T Consensus       139 ~g~s~~~~~-i~~gsv~~~iivW~~~~dn~p~-------------------~l~GHeG~iF~i~~s~dg~~i~s~SdDRs  198 (967)
T KOG0974|consen  139 IGDSAEELY-IASGSVFGEIIVWKPHEDNKPI-------------------RLKGHEGSIFSIVTSLDGRYIASVSDDRS  198 (967)
T ss_pred             EeccCcEEE-EEeccccccEEEEeccccCCcc-------------------eecccCCceEEEEEccCCcEEEEEecCcc
Confidence            345666664 9999999999999987222111                   28899999999999999999999999999


Q ss_pred             EEEEEccCCceeeEEEEeeccccCeeEEEecCCCCceEEEEEeCCCcEEEEEccCCceeEEeecCCc-CeEEEeeeecCC
Q 001415          444 VQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEA-PVYSVCPHHKEN  522 (1082)
Q Consensus       444 v~iwd~~~~~~~~~~~~~~~h~~~V~~l~fs~dg~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~-~v~~~~~~~~~~  522 (1082)
                      +++|++++.+....  +.-+|+..|+.+.|.|+    .++|++.|.+.++|+ ..++.+..+.+|.+ .+..++..+.. 
T Consensus       199 iRlW~i~s~~~~~~--~~fgHsaRvw~~~~~~n----~i~t~gedctcrvW~-~~~~~l~~y~~h~g~~iw~~~~~~~~-  270 (967)
T KOG0974|consen  199 IRLWPIDSREVLGC--TGFGHSARVWACCFLPN----RIITVGEDCTCRVWG-VNGTQLEVYDEHSGKGIWKIAVPIGV-  270 (967)
T ss_pred             eeeeecccccccCc--ccccccceeEEEEeccc----eeEEeccceEEEEEe-cccceehhhhhhhhcceeEEEEcCCc-
Confidence            99999999886652  56689999999999988    389999999999997 55666778888864 47777765433 


Q ss_pred             ceEEEEecCCCcEEEEecCC
Q 001415          523 IQFIFSTALDGKIKAWLYDN  542 (1082)
Q Consensus       523 ~~~l~s~~~dg~i~iwd~~~  542 (1082)
                       ..+++++.|+.+++|++..
T Consensus       271 -~~~vT~g~Ds~lk~~~l~~  289 (967)
T KOG0974|consen  271 -IIKVTGGNDSTLKLWDLNG  289 (967)
T ss_pred             -eEEEeeccCcchhhhhhhc
Confidence             7899999999999998754

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.63  E-value=4.1e-15  Score=151.15  Aligned_cols=199  Identities=16%  Similarity=0.202  Sum_probs=159.4

Q ss_pred             cEEEeecCCCeEEEee-CCeEEEEecCCCeeEEEECCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEecccceeeeeecc
Q 001415          790 PCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKG  868 (1082)
Q Consensus       790 ~~l~~s~dg~~l~~~s-dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~  868 (1082)
                      ..++|+.+|..+++++ ||++|+|+..+...+.....|..+|.++.||| |+++|++-+.| ..+||++.+|-.+.....
T Consensus       148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~-dgk~lasig~d-~~~VW~~~~g~~~a~~t~  225 (398)
T KOG0771|consen  148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSP-DGKFLASIGAD-SARVWSVNTGAALARKTP  225 (398)
T ss_pred             eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCC-CCcEEEEecCC-ceEEEEeccCchhhhcCC
Confidence            7899999999999997 89999999888888888888999999999999 99999999999 999999999977766552


Q ss_pred             --cccCEEEEEEeCCC-----CEEEEEeCCCcEEEEEcCCcccccceeeeccCCCCCCCCCCcEEEEcCCCcEEEE-Eec
Q 001415          869 --HSKRITGLAFSHAL-----NVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHE  940 (1082)
Q Consensus       869 --h~~~V~~l~~s~d~-----~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~-~~d  940 (1082)
                        -.-....+.|+.|+     ..++....-+.|+.|++..+...  ..++...... -...|++++.|+||+++|. +.|
T Consensus       226 ~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~--~~l~~~~~~~-~~~siSsl~VS~dGkf~AlGT~d  302 (398)
T KOG0771|consen  226 FSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGS--NFLRLRKKIK-RFKSISSLAVSDDGKFLALGTMD  302 (398)
T ss_pred             cccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccc--cccchhhhhh-ccCcceeEEEcCCCcEEEEeccC
Confidence              22345667888777     33444455567888887765432  1111111000 0146899999999999999 589


Q ss_pred             CeEEEEEccCcceeeeeccCCCCcceeEEEEcCCCceEEEeecCCcEEEEecCC
Q 001415          941 TQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAAN  994 (1082)
Q Consensus       941 ~~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~dg~~l~t~s~dg~v~vwd~~~  994 (1082)
                      |.|.|++..+.+++.-.+ +.|...|+.++|+||.+++++.+.|..+.|..+.-
T Consensus       303 GsVai~~~~~lq~~~~vk-~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~v  355 (398)
T KOG0771|consen  303 GSVAIYDAKSLQRLQYVK-EAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAV  355 (398)
T ss_pred             CcEEEEEeceeeeeEeeh-hhheeeeeeEEEcCCcCcccccccCCceeEEEEee
Confidence            999999999988877655 58999999999999999999999999999887765

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.63  E-value=2.8e-14  Score=161.75  Aligned_cols=221  Identities=13%  Similarity=0.139  Sum_probs=143.9

Q ss_pred             eecCCCCCceEEEEecCCCeEEEEEcC--CCcEEEEEccccceeeeeceeeeccCCCCcccccccccCCCCceeEEEEec
Q 001415          353 RTLNQGSSPMSMDFHPVQQTLLLVGTN--VGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP  430 (1082)
Q Consensus       353 ~~~~h~~~v~~~~~spdg~~llasgs~--dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~sp  430 (1082)
                      .+..|...+.+++|||||++++.++..  +..|++||+.+++.....                 .+.+|   ..+++|||
T Consensus       198 ~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~-----------------~~~g~---~~~~~wSP  257 (429)
T PRK01742        198 IVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVA-----------------SFRGH---NGAPAFSP  257 (429)
T ss_pred             EeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEe-----------------cCCCc---cCceeECC
Confidence            455688899999999999974444332  246999999887643210                 12233   34689999


Q ss_pred             CCCeEEEEe-CCCeEEEE--EccCCceeeEEEEeeccccCeeEEEecCCCCceEEEEEeCCCcEEEEEccCC-ceeEEee
Q 001415          431 DGSLFGVAY-SRHIVQIY--SYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNG-AKQYIFE  506 (1082)
Q Consensus       431 dg~~las~~-~d~~v~iw--d~~~~~~~~~~~~~~~h~~~V~~l~fs~dg~~~~l~s~s~d~~i~vwd~~~~-~~~~~~~  506 (1082)
                      ||++|++++ .+|.+.||  |+.++.. .   .+..|...+....|+|||+. +++++..++..+||++... .....+ 
T Consensus       258 DG~~La~~~~~~g~~~Iy~~d~~~~~~-~---~lt~~~~~~~~~~wSpDG~~-i~f~s~~~g~~~I~~~~~~~~~~~~l-  331 (429)
T PRK01742        258 DGSRLAFASSKDGVLNIYVMGANGGTP-S---QLTSGAGNNTEPSWSPDGQS-ILFTSDRSGSPQVYRMSASGGGASLV-  331 (429)
T ss_pred             CCCEEEEEEecCCcEEEEEEECCCCCe-E---eeccCCCCcCCEEECCCCCE-EEEEECCCCCceEEEEECCCCCeEEe-
Confidence            999999875 57766655  5555543 2   35667778889999999995 3444556788899987542 223333 


Q ss_pred             cCCcCeEEEeeeecCCceEEEEecCCCcEEEEecCCCCceeeecCCCCceEEEEEccCCCeeeecccccceeEEEecCCC
Q 001415          507 GHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTK  586 (1082)
Q Consensus       507 ~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~i~~~~~~~~~  586 (1082)
                      .+.+  ....|+|  +|++|+..+.++ +.+||+.++........  .....                     ..|+|++
T Consensus       332 ~~~~--~~~~~Sp--DG~~ia~~~~~~-i~~~Dl~~g~~~~lt~~--~~~~~---------------------~~~sPdG  383 (429)
T PRK01742        332 GGRG--YSAQISA--DGKTLVMINGDN-VVKQDLTSGSTEVLSST--FLDES---------------------PSISPNG  383 (429)
T ss_pred             cCCC--CCccCCC--CCCEEEEEcCCC-EEEEECCCCCeEEecCC--CCCCC---------------------ceECCCC
Confidence            3443  3455654  556887777665 55589876543321111  11122                     3456666


Q ss_pred             CEEEEEeCCCeEEEEEC--CCcceEEEEecCCCCCCcCeEEEcCC
Q 001415          587 NRFLAAGDDFSIKFWDM--DSVQLLTSIDADGGLPASPRIRFNKD  629 (1082)
Q Consensus       587 ~~l~~~~~dg~i~iwd~--~~~~~~~~~~~~~~~~~i~~~~~s~d  629 (1082)
                      +.++.++.++.+.+|++  .+|.....+..+..  .+...+|+|-
T Consensus       384 ~~i~~~s~~g~~~~l~~~~~~G~~~~~l~~~~g--~~~~p~wsp~  426 (429)
T PRK01742        384 IMIIYSSTQGLGKVLQLVSADGRFKARLPGSDG--QVKFPAWSPY  426 (429)
T ss_pred             CEEEEEEcCCCceEEEEEECCCCceEEccCCCC--CCCCcccCCC
Confidence            68888888888888875  35777777765443  5778889873

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=99.63  E-value=3.7e-11  Score=123.51  Aligned_cols=435  Identities=11%  Similarity=0.088  Sum_probs=233.3

Q ss_pred             EecC--CCeEEEEEcCCCcEEEEEccccceeeeeceeeeccCCCCcccccccccCCCCceeEEEEecCCCeEEEE-----
Q 001415          366 FHPV--QQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVA-----  438 (1082)
Q Consensus       366 ~spd--g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~-----  438 (1082)
                      ..||  |.++++++..|  +..+++.+|+..+                    +..|-+-|+.-.|+|||+.+|..     
T Consensus        44 l~PDI~GD~IiFt~~Dd--lWe~slk~g~~~r--------------------itS~lGVvnn~kf~pdGrkvaf~rv~~~  101 (668)
T COG4946          44 LNPDIYGDRIIFTCCDD--LWEYSLKDGKPLR--------------------ITSGLGVVNNPKFSPDGRKVAFSRVMLG  101 (668)
T ss_pred             cCCcccCcEEEEEechH--HHHhhhccCCeeE--------------------EecccceeccccCCCCCcEEEEEEEEec
Confidence            4454  56677777654  3334455665544                    56788899999999999999972     


Q ss_pred             --eCCCeEEEEEccCCceeeEEEEeeccccCeeE-EEecCCCCceEEEEEeCCCcEE----EEEccC-CceeEEeecCCc
Q 001415          439 --YSRHIVQIYSYHGGDEVRQHLEIDAHVGGVND-IAFSHPNKQLCVITCGDDKTIK----VWDATN-GAKQYIFEGHEA  510 (1082)
Q Consensus       439 --~~d~~v~iwd~~~~~~~~~~~~~~~h~~~V~~-l~fs~dg~~~~l~s~s~d~~i~----vwd~~~-~~~~~~~~~h~~  510 (1082)
                        ...+.+.+.+.+.|+..+.  ++-|  ...+. .-|+|||.  ++++...-.-..    ++.+.. |.....+  .-+
T Consensus       102 ss~~taDly~v~~e~Ge~kRi--TyfG--r~fT~VaG~~~dg~--iiV~TD~~tPF~q~~~lYkv~~dg~~~e~L--nlG  173 (668)
T COG4946         102 SSLQTADLYVVPSEDGEAKRI--TYFG--RRFTRVAGWIPDGE--IIVSTDFHTPFSQWTELYKVNVDGIKTEPL--NLG  173 (668)
T ss_pred             CCCccccEEEEeCCCCcEEEE--EEec--cccceeeccCCCCC--EEEEeccCCCcccceeeeEEccCCceeeec--cCC
Confidence              2334578888888875442  3333  33344 45999999  677664322222    222221 1111111  223


Q ss_pred             CeEEEeeeecCCceEEEEecCCCcEEEEecCCCCceeeecCCCCceEEEEEccCCCeeeeccc--ccceeEEEecCCCCE
Q 001415          511 PVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFR--KRSLGVVQFDTTKNR  588 (1082)
Q Consensus       511 ~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~--~~~i~~~~~~~~~~~  588 (1082)
                      +.+.+.+   .+| .++.|-..-.+--|.--.+...          -.+-.+.++.+.+...-  .+.+.+--+- .++.
T Consensus       174 pathiv~---~dg-~ivigRntydLP~WK~YkGGtr----------GklWis~d~g~tFeK~vdl~~~vS~PmIV-~~Rv  238 (668)
T COG4946         174 PATHIVI---KDG-IIVIGRNTYDLPHWKGYKGGTR----------GKLWISSDGGKTFEKFVDLDGNVSSPMIV-GERV  238 (668)
T ss_pred             ceeeEEE---eCC-EEEEccCcccCcccccccCCcc----------ceEEEEecCCcceeeeeecCCCcCCceEE-cceE
Confidence            3344332   222 3333322222222211100000          00111122211111000  0000000000 0011


Q ss_pred             EEEEeCCCeEEEE--ECCCcceEEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEecCCccceeecc-----ccc
Q 001415          589 FLAAGDDFSIKFW--DMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFE-----NLA  661 (1082)
Q Consensus       589 l~~~~~dg~i~iw--d~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~iwd~~~~~~~~~~~~-----~~~  661 (1082)
                      .+....+|.=.+|  |+.. +-++   .|.....-.+=..+.||+.++.. ..|.|.+||..+..-....+.     ...
T Consensus       239 YFlsD~eG~GnlYSvdldG-kDlr---rHTnFtdYY~R~~nsDGkrIvFq-~~GdIylydP~td~lekldI~lpl~rk~k  313 (668)
T COG4946         239 YFLSDHEGVGNLYSVDLDG-KDLR---RHTNFTDYYPRNANSDGKRIVFQ-NAGDIYLYDPETDSLEKLDIGLPLDRKKK  313 (668)
T ss_pred             EEEecccCccceEEeccCC-chhh---hcCCchhccccccCCCCcEEEEe-cCCcEEEeCCCcCcceeeecCCccccccc
Confidence            1222333333333  3332 2221   22222222333456788887754 468899999887622111111     001


Q ss_pred             ccccccccccCCCCccccCCCCceeeeccCCceeEEEecccCCCCccccccccCcccccceeEEEEccCCceeeecccCC
Q 001415          662 YDASRTSENSKNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNA  741 (1082)
Q Consensus       662 ~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~  741 (1082)
                      .........|  ..-....+|.+++..+. |...+.+....-      .+.+   ++...|.-..+..+++.++.+..||
T Consensus       314 ~~k~~~psky--ledfa~~~Gd~ia~VSR-GkaFi~~~~~~~------~iqv---~~~~~VrY~r~~~~~e~~vigt~dg  381 (668)
T COG4946         314 QPKFVNPSKY--LEDFAVVNGDYIALVSR-GKAFIMRPWDGY------SIQV---GKKGGVRYRRIQVDPEGDVIGTNDG  381 (668)
T ss_pred             cccccCHHHh--hhhhccCCCcEEEEEec-CcEEEECCCCCe------eEEc---CCCCceEEEEEccCCcceEEeccCC
Confidence            1111001111  01112446777776666 545444433211      1111   1556677777888888888888887


Q ss_pred             -eEEEeeccccccCCCCCcccccCccccCCCCcceeecccCCCCCCCCccEEEeecCCCeEEEeeC-CeEEEEecCCCee
Q 001415          742 -IHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASG-GKISLFNMMTFKT  819 (1082)
Q Consensus       742 -~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~l~~~sd-g~i~iwd~~~~~~  819 (1082)
                       .+.+++..                      +++.....    +.-+.|.++..++||++++++.+ ..|.+.|++++..
T Consensus       382 D~l~iyd~~----------------------~~e~kr~e----~~lg~I~av~vs~dGK~~vvaNdr~el~vididngnv  435 (668)
T COG4946         382 DKLGIYDKD----------------------GGEVKRIE----KDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNV  435 (668)
T ss_pred             ceEEEEecC----------------------CceEEEee----CCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCe
Confidence             77777543                      34332221    14577999999999999999986 7899999999988


Q ss_pred             EEEECCCCCCeeEEEEecCCCcEEEEEeCCC----cEEEEecccceeeeeecccccCEEEEEEeCCCCEEEEEeC
Q 001415          820 MATFMPPPPAATFLAFHPQDNNIIAIGMDDS----SIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGA  890 (1082)
Q Consensus       820 ~~~~~~~~~~v~~l~~sp~~~~~lasg~~dg----~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~  890 (1082)
                      ...-+...+-|+.++|+| +++++|-+--+|    .|+++|+.+++....-. ..+.=.+-+|.||+++|..-+.
T Consensus       436 ~~idkS~~~lItdf~~~~-nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT-~ta~DfsPaFD~d~ryLYfLs~  508 (668)
T COG4946         436 RLIDKSEYGLITDFDWHP-NSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTT-PTAYDFSPAFDPDGRYLYFLSA  508 (668)
T ss_pred             eEecccccceeEEEEEcC-CceeEEEecCcceeeeeEEEEecCCCeEEEecC-CcccccCcccCCCCcEEEEEec
Confidence            777777778899999999 999999887665    78999999888654433 3333456789999999876543

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.62  E-value=1e-13  Score=133.26  Aligned_cols=288  Identities=16%  Similarity=0.187  Sum_probs=199.8

Q ss_pred             ceeEEEEec---CCCeEEEEeC----CCeEEEEEcc--CCceeeEEEEeeccccCeeEEEecCCCCc---eEEEEEeCCC
Q 001415          422 SVNRVIWSP---DGSLFGVAYS----RHIVQIYSYH--GGDEVRQHLEIDAHVGGVNDIAFSHPNKQ---LCVITCGDDK  489 (1082)
Q Consensus       422 ~V~~l~~sp---dg~~las~~~----d~~v~iwd~~--~~~~~~~~~~~~~h~~~V~~l~fs~dg~~---~~l~s~s~d~  489 (1082)
                      .+.++.||.   .+.+||.|+.    .+.|.|-.+.  +++.+... . ..|.-+++.+.|.|+...   -+|||++  .
T Consensus        46 ~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a-~-fd~~YP~tK~~wiPd~~g~~pdlLATs~--D  121 (364)
T KOG0290|consen   46 PLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDA-N-FDHPYPVTKLMWIPDSKGVYPDLLATSS--D  121 (364)
T ss_pred             ceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceeccC-C-CCCCCCccceEecCCccccCcchhhccc--C
Confidence            677788884   3457888873    3566665543  44433321 1 368899999999998741   1466654  4


Q ss_pred             cEEEEEccC--Ccee--EEe-----ecCCcCeEEEeeeecCCceEEEEecCCCcEEEEecCCCCc---eeeecCCCCceE
Q 001415          490 TIKVWDATN--GAKQ--YIF-----EGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGS---RVDYEAPGRWCT  557 (1082)
Q Consensus       490 ~i~vwd~~~--~~~~--~~~-----~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~---~~~~~~~~~~v~  557 (1082)
                      .+|+|.+..  ++..  ..+     ..+..++++..|.... -++|.+++-|-+..+||++++..   ...+-.|...|.
T Consensus       122 ~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~d-p~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~  200 (364)
T KOG0290|consen  122 FLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVD-PNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVY  200 (364)
T ss_pred             eEEEEeccCcCCceehhhhhccCcccccCCcccccccccCC-cceeEeecccCeEEEEEEeeccccceeeEEEecCccee
Confidence            799999873  2211  111     2356788988887543 37999999999999999998633   446677888999


Q ss_pred             EEEEccCCCeeeecccccceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEEecCCC-CCCcCeEEEcC-CCCEEEE
Q 001415          558 TMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGG-LPASPRIRFNK-DGCLLAV  635 (1082)
Q Consensus       558 ~~~~s~d~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-~~~i~~~~~s~-dg~~l~~  635 (1082)
                      .++|..++.                    +.|++.|.||.+|++|++..+--..+-.... ..+...++|++ |-+++|+
T Consensus       201 DIaf~~~s~--------------------~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymAT  260 (364)
T KOG0290|consen  201 DIAFLKGSR--------------------DVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMAT  260 (364)
T ss_pred             EEEeccCcc--------------------ceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhh
Confidence            999988665                    3689999999999999998765544433222 45678899988 5567776


Q ss_pred             EEC-CCcEEEEEecCCccceeecccccccccccccccCCCCccccCCCCceeeeccCCceeEEEecccCCCCcccccccc
Q 001415          636 STN-DNGIKILATSDGIRLLRTFENLAYDASRTSENSKNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLP  714 (1082)
Q Consensus       636 ~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~  714 (1082)
                      -.. ...|.|.|++.....+..+++|...+.  .++|.      ......+.+++.|..+.+||+..........++-.-
T Consensus       261 f~~dS~~V~iLDiR~P~tpva~L~~H~a~VN--gIaWa------PhS~~hictaGDD~qaliWDl~q~~~~~~~dPilay  332 (364)
T KOG0290|consen  261 FAMDSNKVVILDIRVPCTPVARLRNHQASVN--GIAWA------PHSSSHICTAGDDCQALIWDLQQMPRENGEDPILAY  332 (364)
T ss_pred             hhcCCceEEEEEecCCCcceehhhcCccccc--ceEec------CCCCceeeecCCcceEEEEecccccccCCCCchhhh
Confidence            544 456999999998888999999998887  66662      234567889999999999999876542221111111


Q ss_pred             CcccccceeEEEEccCCceeeecccCCeEE
Q 001415          715 ENLRATKISRLIFTNSGNAILALASNAIHL  744 (1082)
Q Consensus       715 ~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~  744 (1082)
                        ...+.|..+.|++...-.++...+..+.
T Consensus       333 --~a~~EVNqi~Ws~~~~Dwiai~~~kkle  360 (364)
T KOG0290|consen  333 --TAGGEVNQIQWSSSQPDWIAICFGKKLE  360 (364)
T ss_pred             --hccceeeeeeecccCCCEEEEEecCeee
Confidence              1567899999997554344444443433

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.62  E-value=6.1e-13  Score=144.99  Aligned_cols=326  Identities=10%  Similarity=0.113  Sum_probs=197.7

Q ss_pred             EEEEecCCCcEEEEecCCCCceeeecCCCCceEEEEEccCCCeeeecccccceeEEEecCCCCEEEEEeCCCeEEEEECC
Q 001415          525 FIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMD  604 (1082)
Q Consensus       525 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~  604 (1082)
                      ++++-..++.|.+.|..+.+....+.........+.+++||+                     ++++++.||.|.++|+.
T Consensus         8 ~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr---------------------~~yv~~rdg~vsviD~~   66 (369)
T PF02239_consen    8 FYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGR---------------------YLYVANRDGTVSVIDLA   66 (369)
T ss_dssp             EEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SS---------------------EEEEEETTSEEEEEETT
T ss_pred             EEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCC---------------------EEEEEcCCCeEEEEECC
Confidence            445667789999999998777777665544434455666665                     78888899999999999


Q ss_pred             CcceEEEEecCCCCCCcCeEEEcCCCCEEEEEE-CCCcEEEEEecCCccceeecccccccccccccccCCCCccccCCCC
Q 001415          605 SVQLLTSIDADGGLPASPRIRFNKDGCLLAVST-NDNGIKILATSDGIRLLRTFENLAYDASRTSENSKNGDVRSLADVK  683 (1082)
Q Consensus       605 ~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~  683 (1082)
                      +++.+..+.....   ..++++++||++++++. ..+.+.++|..+. +.++.+.......                   
T Consensus        67 ~~~~v~~i~~G~~---~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tl-e~v~~I~~~~~~~-------------------  123 (369)
T PF02239_consen   67 TGKVVATIKVGGN---PRGIAVSPDGKYVYVANYEPGTVSVIDAETL-EPVKTIPTGGMPV-------------------  123 (369)
T ss_dssp             SSSEEEEEE-SSE---EEEEEE--TTTEEEEEEEETTEEEEEETTT---EEEEEE--EE-T-------------------
T ss_pred             cccEEEEEecCCC---cceEEEcCCCCEEEEEecCCCceeEeccccc-cceeecccccccc-------------------
Confidence            9999999876543   57899999999998775 6899999998877 4444332211110                   


Q ss_pred             ceeeeccCCceeEEEecccCCCCccccccccCcccccceeEEEEccCCceeeeccc-CCeEEEeeccccccCCCCCcccc
Q 001415          684 PRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALAS-NAIHLLWKWQRTERNSSGKATAS  762 (1082)
Q Consensus       684 ~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~-d~~i~iw~~~~~~~~~~~~~~~~  762 (1082)
                                                      .....++.++..++....++..-. .+.+.+-|.....          
T Consensus       124 --------------------------------~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~----------  161 (369)
T PF02239_consen  124 --------------------------------DGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPK----------  161 (369)
T ss_dssp             --------------------------------TTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSS----------
T ss_pred             --------------------------------cccCCCceeEEecCCCCEEEEEEccCCeEEEEEecccc----------
Confidence                                            002345566666777764444433 4666655543210          


Q ss_pred             cCccccCCCCcceeecccCCCCCCCCccEEEeecCCCeEEEee--CCeEEEEecCCCeeEEEECC----CCCCeeEE---
Q 001415          763 VAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS--GGKISLFNMMTFKTMATFMP----PPPAATFL---  833 (1082)
Q Consensus       763 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~l~~~s--dg~i~iwd~~~~~~~~~~~~----~~~~v~~l---  833 (1082)
                               .  .....+.   .........|+|++++++++.  .+.|.++|..+++.+..+..    |......+   
T Consensus       162 ---------~--~~~~~i~---~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php  227 (369)
T PF02239_consen  162 ---------N--LKVTTIK---VGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHP  227 (369)
T ss_dssp             ---------C--EEEEEEE-----TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEET
T ss_pred             ---------c--cceeeec---ccccccccccCcccceeeecccccceeEEEeeccceEEEEeeccccccccccccccCC
Confidence                     0  0000000   234566789999999988775  57899999999888776542    22222222   


Q ss_pred             ----EEecC-CCcEEEEEeCCCcEEEEecccceeeeeecccccCEEEEEEeCCCCEEEEE----eCCCcEEEEEcCCccc
Q 001415          834 ----AFHPQ-DNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSS----GADSQLCVWSSDGWEK  904 (1082)
Q Consensus       834 ----~~sp~-~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~----s~Dg~i~vwd~~~~~~  904 (1082)
                          .|... .+...++.-....+.+||..+.+.++++....++ .-+..+||++++...    ...++|.++|.++.+.
T Consensus       228 ~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~  306 (369)
T PF02239_consen  228 GFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGG-LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKV  306 (369)
T ss_dssp             TTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS---EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEE
T ss_pred             CcceEEeeccccceecccccCCccccchhhcCeEEEEEECCCCc-ceeecCCCCccEEeeccCCCCCceEEEEECcCcce
Confidence                12110 1222222222346678899999999999987777 778889999999987    4558899999998532


Q ss_pred             ccceeeeccCCCCCCCCCCcEEEEcCCCcEEEEE---ecCeEEEEEccCcceeeeec
Q 001415          905 QKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV---HETQLAIFETTKLECVKQWV  958 (1082)
Q Consensus       905 ~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~---~d~~i~iwd~~~~~~~~~~~  958 (1082)
                      ..  .+....+     ..+..+.|++||+++..+   .++.|.+||..+.+.+..+.
T Consensus       307 ~~--~i~~~~~-----~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~~Tl~~~~~i~  356 (369)
T PF02239_consen  307 VK--TITPGPG-----KRVVHMEFNPDGKEVWVSVWDGNGAIVVYDAKTLKEKKRIP  356 (369)
T ss_dssp             EE---HHHHHT-------EEEEEE-TTSSEEEEEEE--TTEEEEEETTTTEEEEEEE
T ss_pred             eE--EEeccCC-----CcEeccEECCCCCEEEEEEecCCCEEEEEECCCcEEEEEEE
Confidence            11  1111111     236899999999988773   34489999999999988765

...

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.61  E-value=1.2e-13  Score=156.49  Aligned_cols=225  Identities=13%  Similarity=0.132  Sum_probs=148.6

Q ss_pred             CCcEEEEEccccceeeeeceeeeccCCCCcccccccccCCCCceeEEEEecCCCeEEEEeCC---CeEEEEEccCCceee
Q 001415          380 VGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSR---HIVQIYSYHGGDEVR  456 (1082)
Q Consensus       380 dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d---~~v~iwd~~~~~~~~  456 (1082)
                      +..|.+||.......                    .+..|...+.+.+|||||++||.++.+   ..|.+||+.+++...
T Consensus       183 ~~~i~i~d~dg~~~~--------------------~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~  242 (429)
T PRK01742        183 PYEVRVADYDGFNQF--------------------IVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKV  242 (429)
T ss_pred             eEEEEEECCCCCCce--------------------EeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEE
Confidence            468999998665432                    256778899999999999999988654   469999998876432


Q ss_pred             EEEEeeccccCeeEEEecCCCCceEEEE-EeCCCcEEEE--EccCCceeEEeecCCcCeEEEeeeecCCceEEEE-ecCC
Q 001415          457 QHLEIDAHVGGVNDIAFSHPNKQLCVIT-CGDDKTIKVW--DATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFS-TALD  532 (1082)
Q Consensus       457 ~~~~~~~h~~~V~~l~fs~dg~~~~l~s-~s~d~~i~vw--d~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s-~~~d  532 (1082)
                       ...+.+|   ...++|+|||+.  |+. .+.+|.+.||  |+.++. ...+..+...+....|++++  ..|+. ...+
T Consensus       243 -l~~~~g~---~~~~~wSPDG~~--La~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG--~~i~f~s~~~  313 (429)
T PRK01742        243 -VASFRGH---NGAPAFSPDGSR--LAFASSKDGVLNIYVMGANGGT-PSQLTSGAGNNTEPSWSPDG--QSILFTSDRS  313 (429)
T ss_pred             -EecCCCc---cCceeECCCCCE--EEEEEecCCcEEEEEEECCCCC-eEeeccCCCCcCCEEECCCC--CEEEEEECCC
Confidence             2233444   446899999994  554 4567876655  555554 45566677777888887654  55554 4467


Q ss_pred             CcEEEEecCCCCceeeecCCCCceEEEEEccCCCeeeecccccceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEE
Q 001415          533 GKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSI  612 (1082)
Q Consensus       533 g~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~  612 (1082)
                      +...+|+++..........+..                       ....|+|+|++++..+.++ +.+||+.+++.....
T Consensus       314 g~~~I~~~~~~~~~~~~l~~~~-----------------------~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~lt  369 (429)
T PRK01742        314 GSPQVYRMSASGGGASLVGGRG-----------------------YSAQISADGKTLVMINGDN-VVKQDLTSGSTEVLS  369 (429)
T ss_pred             CCceEEEEECCCCCeEEecCCC-----------------------CCccCCCCCCEEEEEcCCC-EEEEECCCCCeEEec
Confidence            8889998754322111111110                       1244666666887777665 556999888765332


Q ss_pred             ecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEec--CCccceeecccccc
Q 001415          613 DADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATS--DGIRLLRTFENLAY  662 (1082)
Q Consensus       613 ~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~iwd~~--~~~~~~~~~~~~~~  662 (1082)
                      ...    ....+.|+|||++|+.++.++...+|++.  ++ ...+.+..+..
T Consensus       370 ~~~----~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G-~~~~~l~~~~g  416 (429)
T PRK01742        370 STF----LDESPSISPNGIMIIYSSTQGLGKVLQLVSADG-RFKARLPGSDG  416 (429)
T ss_pred             CCC----CCCCceECCCCCEEEEEEcCCCceEEEEEECCC-CceEEccCCCC
Confidence            221    23568899999999999999998888764  34 44555554443

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.61  E-value=2e-13  Score=135.33  Aligned_cols=265  Identities=16%  Similarity=0.196  Sum_probs=175.4

Q ss_pred             CCCceEEEEecCCCeEEEEEcCCCcEEEEEccccceeeeeceeeeccCCCCcccccccccCCCCceeEEEEec-CCCeEE
Q 001415          358 GSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP-DGSLFG  436 (1082)
Q Consensus       358 ~~~v~~~~~spdg~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~sp-dg~~la  436 (1082)
                      ...+..++|++.=-. +|++..|-.|+|||-.......                   +-..-...|+|++|-| .++-||
T Consensus        98 ~~dlr~~aWhqH~~~-fava~nddvVriy~ksst~pt~-------------------Lks~sQrnvtclawRPlsasela  157 (445)
T KOG2139|consen   98 EIDLRGVAWHQHIIA-FAVATNDDVVRIYDKSSTCPTK-------------------LKSVSQRNVTCLAWRPLSASELA  157 (445)
T ss_pred             hcceeeEeechhhhh-hhhhccCcEEEEeccCCCCCce-------------------ecchhhcceeEEEeccCCcceee
Confidence            445778889885442 7788999999999976522111                   1223345899999999 556788


Q ss_pred             EEeCCCeEEEEEccCCceee-----------EEEEeeccccCeeEEEecCCCCceEEEEEe-CCCcEEEEEccCCceeEE
Q 001415          437 VAYSRHIVQIYSYHGGDEVR-----------QHLEIDAHVGGVNDIAFSHPNKQLCVITCG-DDKTIKVWDATNGAKQYI  504 (1082)
Q Consensus       437 s~~~d~~v~iwd~~~~~~~~-----------~~~~~~~h~~~V~~l~fs~dg~~~~l~s~s-~d~~i~vwd~~~~~~~~~  504 (1082)
                      +|+..| |.||.........           +...-.|| .+|+++.|.+||.  .+++++ .|..|.|||+.++..+..
T Consensus       158 vgCr~g-IciW~~s~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt--~l~tAS~gsssi~iWdpdtg~~~pL  233 (445)
T KOG2139|consen  158 VGCRAG-ICIWSDSRTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGT--ILVTASFGSSSIMIWDPDTGQKIPL  233 (445)
T ss_pred             eeecce-eEEEEcCcccccccccccccccchhheeCCCC-ceeeEEEEcCCCC--EEeecccCcceEEEEcCCCCCcccc
Confidence            887765 9999875321111           12233455 6899999999999  678777 456799999999988766


Q ss_pred             eecCCcCeEEEeeeecCCceEEEEecCCCcEEEEecCCCCceeeecCCCCceEEEEEccCCCeeeeccc-ccceeEEEec
Q 001415          505 FEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFR-KRSLGVVQFD  583 (1082)
Q Consensus       505 ~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~-~~~i~~~~~~  583 (1082)
                      .....+.+.-+.|+|+.  .+|+++.-|+..++|.....-.........+.|...+|+|+|+.++.... ...+.++.|+
T Consensus       234 ~~~glgg~slLkwSPdg--d~lfaAt~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~sgsp~lysl~f~  311 (445)
T KOG2139|consen  234 IPKGLGGFSLLKWSPDG--DVLFAATCDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLFACSGSPRLYSLTFD  311 (445)
T ss_pred             cccCCCceeeEEEcCCC--CEEEEecccceeeeehhcccceecceeccCCceeeeeecCCCCEEEEEEcCCceEEEEeec
Confidence            54456778888997665  69999999999999966554444444445558999999999986655443 3456666666


Q ss_pred             CCCCEEE-EEeCCCeEEEEECCCcceEEEEecCCCCCCcCeEEEcCCCCEEEEEECCCc--------EEEEEecCC
Q 001415          584 TTKNRFL-AAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNG--------IKILATSDG  650 (1082)
Q Consensus       584 ~~~~~l~-~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~--------i~iwd~~~~  650 (1082)
                      .....+. .++....+-+-|+..-.....-..  -..++.+++|.|.|.+|++....+.        |.+||.+..
T Consensus       312 ~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l--~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~s  385 (445)
T KOG2139|consen  312 GEDSVFLRPQSIKRVLLIADLQEVTICAGQRL--CCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKS  385 (445)
T ss_pred             CCCccccCcccceeeeeeccchhhhhhcCccc--ccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhccccc
Confidence            5443333 333333334444432111110000  1235789999999999998765443        556665544

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.61  E-value=7.9e-13  Score=132.01  Aligned_cols=238  Identities=16%  Similarity=0.200  Sum_probs=175.6

Q ss_pred             CCCceEEEEecCCCeEEEEEcCCCcEEEEEccccceeeeeceeeeccCCCCcccccccccCCCCceeEEEEecCCCeEEE
Q 001415          358 GSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGV  437 (1082)
Q Consensus       358 ~~~v~~~~~spdg~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las  437 (1082)
                      ...+..+.|..|.. +|..|+.||. ++++.+.-.....                   .....-.|-.+-||.  .++|.
T Consensus         5 ~~ti~~~~~Nqd~~-~lsvGs~~Gy-k~~~~~~~~k~~~-------------------~~~~~~~IvEmLFSS--SLvai   61 (391)
T KOG2110|consen    5 KPTINFIGFNQDST-LLSVGSKDGY-KIFSCSPFEKCFS-------------------KDTEGVSIVEMLFSS--SLVAI   61 (391)
T ss_pred             Ccceeeeeecccee-EEEccCCCce-eEEecCchHHhhc-------------------ccCCCeEEEEeeccc--ceeEE
Confidence            34567777999998 6999998875 4555544322110                   112233555666664  46666


Q ss_pred             EeCC--CeEEEEEccCCceeeEEEEeeccccCeeEEEecCCCCceEEEEEeCCCcEEEEEccCCceeEEeecC---CcCe
Q 001415          438 AYSR--HIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGH---EAPV  512 (1082)
Q Consensus       438 ~~~d--~~v~iwd~~~~~~~~~~~~~~~h~~~V~~l~fs~dg~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h---~~~v  512 (1082)
                      .+.+  ..+++++.+.+..++..   . ....|.++.+..+    .|+.+=.+ .|.|+|+++-+.++++...   ...+
T Consensus        62 V~~~qpr~Lkv~~~Kk~~~ICe~---~-fpt~IL~VrmNr~----RLvV~Lee-~IyIydI~~MklLhTI~t~~~n~~gl  132 (391)
T KOG2110|consen   62 VSIKQPRKLKVVHFKKKTTICEI---F-FPTSILAVRMNRK----RLVVCLEE-SIYIYDIKDMKLLHTIETTPPNPKGL  132 (391)
T ss_pred             EecCCCceEEEEEcccCceEEEE---e-cCCceEEEEEccc----eEEEEEcc-cEEEEecccceeehhhhccCCCccce
Confidence            6554  35999999988877632   2 3457999998754    34444433 4999999999999988654   3334


Q ss_pred             EEEeeeecCCceEEEEec--CCCcEEEEecCCCCceeeecCCCCceEEEEEccCCCeeeecccccceeEEEecCCCCEEE
Q 001415          513 YSVCPHHKENIQFIFSTA--LDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFL  590 (1082)
Q Consensus       513 ~~~~~~~~~~~~~l~s~~--~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~i~~~~~~~~~~~l~  590 (1082)
                      .  +++++.++.+++.-+  ..|.|.+||..+......+..|.+.+.+++|+++|.                     .++
T Consensus       133 ~--AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~~G~---------------------llA  189 (391)
T KOG2110|consen  133 C--ALSPNNANCYLAYPGSTTSGDVVLFDTINLQPVNTINAHKGPLAALAFSPDGT---------------------LLA  189 (391)
T ss_pred             E--eeccCCCCceEEecCCCCCceEEEEEcccceeeeEEEecCCceeEEEECCCCC---------------------EEE
Confidence            4  455556556777654  368899999999888888888888888888877776                     899


Q ss_pred             EEeCCCe-EEEEECCCcceEEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEecCC
Q 001415          591 AAGDDFS-IKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG  650 (1082)
Q Consensus       591 ~~~~dg~-i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~iwd~~~~  650 (1082)
                      ++++.|+ |||+.+.+|+.+..++.......|.+++|+|++++|++.++.++|.++.+...
T Consensus       190 TASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~~  250 (391)
T KOG2110|consen  190 TASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAASSNTETVHIFKLEKV  250 (391)
T ss_pred             EeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEEEecCCCeEEEEEeccc
Confidence            9999887 79999999999999986655567899999999999999999999999988654

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.60  E-value=3.3e-13  Score=153.92  Aligned_cols=212  Identities=11%  Similarity=0.112  Sum_probs=151.6

Q ss_pred             ccCCCCceeEEEEecCC-CeEEEEeCCCeEEEEEccCC----ceeeEEEEeeccccCeeEEEecCCCCceEEEEEeCCCc
Q 001415          416 VKDPGVSVNRVIWSPDG-SLFGVAYSRHIVQIYSYHGG----DEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKT  490 (1082)
Q Consensus       416 ~~~h~~~V~~l~~spdg-~~las~~~d~~v~iwd~~~~----~~~~~~~~~~~h~~~V~~l~fs~dg~~~~l~s~s~d~~  490 (1082)
                      +..|...|..++.+++. .++++|+.||+|++||...-    ...+...++......+.++.+.+.+.  .+|.++.||.
T Consensus      1044 L~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~--~~Av~t~DG~ 1121 (1431)
T KOG1240|consen 1044 LHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGD--QFAVSTKDGS 1121 (1431)
T ss_pred             hhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCC--eEEEEcCCCe
Confidence            78899999999998855 99999999999999998632    22334445554577899999999999  6888899999


Q ss_pred             EEEEEccC--Cc-----eeEEeecC-CcCeEEE-eeeecCCceEEEEecCCCcEEEEecCCCCceeeec--CCCCceEEE
Q 001415          491 IKVWDATN--GA-----KQYIFEGH-EAPVYSV-CPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYE--APGRWCTTM  559 (1082)
Q Consensus       491 i~vwd~~~--~~-----~~~~~~~h-~~~v~~~-~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~--~~~~~v~~~  559 (1082)
                      |++.++..  ..     +.+....+ .+.+.++ ++........++.+..-+.|..||.+.........  ...+     
T Consensus      1122 v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG----- 1196 (1431)
T KOG1240|consen 1122 VRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHG----- 1196 (1431)
T ss_pred             EEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCcccc-----
Confidence            99999875  21     22222222 2344444 33332222478888889999999998755444322  2233     


Q ss_pred             EEccCCCeeeecccccceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEEecCCCCCCcCeEEEcCC---CCEEEEE
Q 001415          560 AYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKD---GCLLAVS  636 (1082)
Q Consensus       560 ~~s~d~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~d---g~~l~~~  636 (1082)
                                      .+++++.+|.+++++.|...|.+.+||++-+.++..+..... .++..+..+|-   ....+++
T Consensus      1197 ----------------~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~-~~i~~v~~~~~~~~~S~~vs~ 1259 (1431)
T KOG1240|consen 1197 ----------------LVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPAR-APIRHVWLCPTYPQESVSVSA 1259 (1431)
T ss_pred             ----------------ceeEEEecCCceEEEEecCCceEEEEEeecCceeecccCccc-CCcceEEeeccCCCCceEEEe
Confidence                            445555555666999999999999999999999988876554 56777777762   2455544


Q ss_pred             E--CCCcEEEEEecCCc
Q 001415          637 T--NDNGIKILATSDGI  651 (1082)
Q Consensus       637 ~--~dg~i~iwd~~~~~  651 (1082)
                      +  ..+.|.+|++.+|.
T Consensus      1260 ~~~~~nevs~wn~~~g~ 1276 (1431)
T KOG1240|consen 1260 GSSSNNEVSTWNMETGL 1276 (1431)
T ss_pred             cccCCCceeeeecccCc
Confidence            4  46789999999883

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.60  E-value=4.8e-12  Score=138.04  Aligned_cols=328  Identities=18%  Similarity=0.216  Sum_probs=189.7

Q ss_pred             EEEEEcCCCcEEEEEccccceeeeeceeeeccCCCCcccccccccCCCCceeEEEEecCCCeEEEEeCCCeEEEEEccCC
Q 001415          373 LLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGG  452 (1082)
Q Consensus       373 llasgs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d~~v~iwd~~~~  452 (1082)
                      ++++-..+|.|.|.|..+.+.+.+                   +......-..++|+|||+++.+++.||.|.++|+.++
T Consensus         8 ~~V~~~~~~~v~viD~~t~~~~~~-------------------i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~   68 (369)
T PF02239_consen    8 FYVVERGSGSVAVIDGATNKVVAR-------------------IPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATG   68 (369)
T ss_dssp             EEEEEGGGTEEEEEETTT-SEEEE-------------------EE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSS
T ss_pred             EEEEecCCCEEEEEECCCCeEEEE-------------------EcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcc
Confidence            456777899999999999888875                   2222223345789999999999999999999999999


Q ss_pred             ceeeEEEEeeccccCeeEEEecCCCCceEEEEEeCCCcEEEEEccCCceeEEeecC-------CcCeEEEeeeecCCceE
Q 001415          453 DEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGH-------EAPVYSVCPHHKENIQF  525 (1082)
Q Consensus       453 ~~~~~~~~~~~h~~~V~~l~fs~dg~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h-------~~~v~~~~~~~~~~~~~  525 (1082)
                      +.+..   +.. .....++++|+||+. ++++...++.+.++|.++.+.++.+...       ..++.++..++... .+
T Consensus        69 ~~v~~---i~~-G~~~~~i~~s~DG~~-~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~-~f  142 (369)
T PF02239_consen   69 KVVAT---IKV-GGNPRGIAVSPDGKY-VYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRP-EF  142 (369)
T ss_dssp             SEEEE---EE--SSEEEEEEE--TTTE-EEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSS-EE
T ss_pred             cEEEE---Eec-CCCcceEEEcCCCCE-EEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCC-EE
Confidence            97773   433 234678999999995 4455567899999999999999887643       23566665544432 35


Q ss_pred             EEEecCCCcEEEEecCCCCcee-eecCCCCceEEEEEccCCCeeeecccccceeEEEecCCCCEEEEE-eCCCeEEEEEC
Q 001415          526 IFSTALDGKIKAWLYDNLGSRV-DYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAA-GDDFSIKFWDM  603 (1082)
Q Consensus       526 l~s~~~dg~i~iwd~~~~~~~~-~~~~~~~~v~~~~~s~d~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~i~iwd~  603 (1082)
                      +++.-..+.|-+-|........ .........                     ....|+|++++++++ ..++.|-++|.
T Consensus       143 Vv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~---------------------~D~~~dpdgry~~va~~~sn~i~viD~  201 (369)
T PF02239_consen  143 VVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFP---------------------HDGGFDPDGRYFLVAANGSNKIAVIDT  201 (369)
T ss_dssp             EEEETTTTEEEEEETTTSSCEEEEEEE--TTE---------------------EEEEE-TTSSEEEEEEGGGTEEEEEET
T ss_pred             EEEEccCCeEEEEEeccccccceeeecccccc---------------------cccccCcccceeeecccccceeEEEee
Confidence            5555555777777766543322 111112222                     234555555576554 56778999998


Q ss_pred             CCcceEEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEecCCccceeecccccccccccccccCCCCccccCCCC
Q 001415          604 DSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKNGDVRSLADVK  683 (1082)
Q Consensus       604 ~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~  683 (1082)
                      .+++.+..+.......+..                                                             
T Consensus       202 ~~~k~v~~i~~g~~p~~~~-------------------------------------------------------------  220 (369)
T PF02239_consen  202 KTGKLVALIDTGKKPHPGP-------------------------------------------------------------  220 (369)
T ss_dssp             TTTEEEEEEE-SSSBEETT-------------------------------------------------------------
T ss_pred             ccceEEEEeeccccccccc-------------------------------------------------------------
Confidence            8776655443211100000                                                             


Q ss_pred             ceeeeccCCceeEEEecccCCCCccccccccCcccccceeEEEEccCCceeeecccCCeEEEeeccccccCCCCCccccc
Q 001415          684 PRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASV  763 (1082)
Q Consensus       684 ~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~  763 (1082)
                                                            ...+ .+|...           .+|..               
T Consensus       221 --------------------------------------~~~~-php~~g-----------~vw~~---------------  235 (369)
T PF02239_consen  221 --------------------------------------GANF-PHPGFG-----------PVWAT---------------  235 (369)
T ss_dssp             --------------------------------------EEEE-EETTTE-----------EEEEE---------------
T ss_pred             --------------------------------------cccc-cCCCcc-----------eEEee---------------
Confidence                                                  0000 000000           00100               


Q ss_pred             CccccCCCCcceeecccCCCCCCCCccEEEeecCCCeE-EEeeCCeEEEEecCCCeeEEEECCCCCCeeEEEEecCCCcE
Q 001415          764 APQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYV-MSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNI  842 (1082)
Q Consensus       764 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~l-~~~sdg~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~  842 (1082)
                                                     +..+... ...+.+.+.+||..+.+.++++...... .-+..+| ++++
T Consensus       236 -------------------------------~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~g-lFi~thP-~s~~  282 (369)
T PF02239_consen  236 -------------------------------SGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGG-LFIKTHP-DSRY  282 (369)
T ss_dssp             -------------------------------EBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS---EE--T-T-SE
T ss_pred             -------------------------------ccccceecccccCCccccchhhcCeEEEEEECCCCc-ceeecCC-CCcc
Confidence                                           0011111 1122344557777888888888766555 7788899 7888


Q ss_pred             EEEE----eCCCcEEEEecccceeeeeecccc-cCEEEEEEeCCCCEEEEEeCC--CcEEEEEcCCcccc
Q 001415          843 IAIG----MDDSSIQIYNVRVDEVKSKLKGHS-KRITGLAFSHALNVLVSSGAD--SQLCVWSSDGWEKQ  905 (1082)
Q Consensus       843 lasg----~~dg~v~iwd~~~~~~~~~l~~h~-~~V~~l~~s~d~~~l~s~s~D--g~i~vwd~~~~~~~  905 (1082)
                      +.+.    ...++|.++|..+.+.+..+.... ..+..+.|++||+.+..+..+  +.|.+||..+.+..
T Consensus       283 vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~~Tl~~~  352 (369)
T PF02239_consen  283 VWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVHMEFNPDGKEVWVSVWDGNGAIVVYDAKTLKEK  352 (369)
T ss_dssp             EEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEEEEE-TTSSEEEEEEE--TTEEEEEETTTTEEE
T ss_pred             EEeeccCCCCCceEEEEECcCcceeEEEeccCCCcEeccEECCCCCEEEEEEecCCCEEEEEECCCcEEE
Confidence            8877    455899999999998877775333 358899999999976655443  36999999996543

...

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.60  E-value=2.1e-13  Score=155.50  Aligned_cols=269  Identities=14%  Similarity=0.157  Sum_probs=178.2

Q ss_pred             eeeecCCCCCceEEEEecCCCeEEEEEcCCCcEEEEEccccceeeeeceeeeccCCCCcccccccccCCCCceeEEEEec
Q 001415          351 VTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP  430 (1082)
Q Consensus       351 ~~~~~~h~~~v~~~~~spdg~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~sp  430 (1082)
                      +.++..|...|..++.+++..-++++||.||+|++||...-..-.. .++           ..-.+......+.++.+.+
T Consensus      1041 VAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~-s~r-----------S~ltys~~~sr~~~vt~~~ 1108 (1431)
T KOG1240|consen 1041 VAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGG-SAR-----------SELTYSPEGSRVEKVTMCG 1108 (1431)
T ss_pred             eehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcc-eee-----------eeEEEeccCCceEEEEecc
Confidence            4566679999999999887744799999999999999864221100 000           0001333567899999999


Q ss_pred             CCCeEEEEeCCCeEEEEEccCC--ceee--EEEEeecc-cc-CeeEEEecCCCCceEEEEEeCCCcEEEEEccCCceeEE
Q 001415          431 DGSLFGVAYSRHIVQIYSYHGG--DEVR--QHLEIDAH-VG-GVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYI  504 (1082)
Q Consensus       431 dg~~las~~~d~~v~iwd~~~~--~~~~--~~~~~~~h-~~-~V~~l~fs~dg~~~~l~s~s~d~~i~vwd~~~~~~~~~  504 (1082)
                      .|..+|+++.||.|++.+++-.  +...  +......+ .+ .|..-+|....+...++.+..-+.|..||+.......+
T Consensus      1109 ~~~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~ 1188 (1431)
T KOG1240|consen 1109 NGDQFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWR 1188 (1431)
T ss_pred             CCCeEEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHh
Confidence            9999999999999999998762  1111  11111122 22 34444555444433678888889999999988766655


Q ss_pred             ee--cCCcCeEEEeeeecCCceEEEEecCCCcEEEEecCCCCceeeecCCC-CceEEEEEccCCCeeeecccccceeEEE
Q 001415          505 FE--GHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPG-RWCTTMAYSADGTRTYQGFRKRSLGVVQ  581 (1082)
Q Consensus       505 ~~--~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~~v~~~~~s~d~~~~~~~~~~~~i~~~~  581 (1082)
                      ++  -..|.|++++.++..  .+++.|+..|.+.+||++-......+..+. .++..+...|-.                
T Consensus      1189 lk~~~~hG~vTSi~idp~~--~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~---------------- 1250 (1431)
T KOG1240|consen 1189 LKNQLRHGLVTSIVIDPWC--NWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTY---------------- 1250 (1431)
T ss_pred             hhcCccccceeEEEecCCc--eEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccC----------------
Confidence            44  245789999986544  799999999999999998766665444322 344444433322                


Q ss_pred             ecCCCCEEEEE-e-CCCeEEEEECCCcceEEEEecCCCC-----------------CCcCeEEEcCCCCEEEEEECCCcE
Q 001415          582 FDTTKNRFLAA-G-DDFSIKFWDMDSVQLLTSIDADGGL-----------------PASPRIRFNKDGCLLAVSTNDNGI  642 (1082)
Q Consensus       582 ~~~~~~~l~~~-~-~dg~i~iwd~~~~~~~~~~~~~~~~-----------------~~i~~~~~s~dg~~l~~~~~dg~i  642 (1082)
                        +.....+++ . ..+.|.+|++.+|.+...+......                 .....+.+...+..+.+|+.|..|
T Consensus      1251 --~~~S~~vs~~~~~~nevs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kI 1328 (1431)
T KOG1240|consen 1251 --PQESVSVSAGSSSNNEVSTWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKI 1328 (1431)
T ss_pred             --CCCceEEEecccCCCceeeeecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccce
Confidence              122234443 3 5788999999999776666433110                 011223344456788999999999


Q ss_pred             EEEEecCCc
Q 001415          643 KILATSDGI  651 (1082)
Q Consensus       643 ~iwd~~~~~  651 (1082)
                      +.||.....
T Consensus      1329 R~wD~~~p~ 1337 (1431)
T KOG1240|consen 1329 RKWDPTRPE 1337 (1431)
T ss_pred             eeccCCCcc
Confidence            999987663

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.57  E-value=9.2e-13  Score=130.70  Aligned_cols=289  Identities=12%  Similarity=0.151  Sum_probs=186.2

Q ss_pred             ceeeeccCCceeEEEecccCCCCccccccccCcccccceeEEEEccCCceeeecccCCeEEEeeccccccCCCCCccccc
Q 001415          684 PRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASV  763 (1082)
Q Consensus       684 ~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~  763 (1082)
                      .++++..|..|++|+-.. ..+..++..      ....|++++|-|.+..-++.+..+.|.+|..+........      
T Consensus       112 ~fava~nddvVriy~kss-t~pt~Lks~------sQrnvtclawRPlsaselavgCr~gIciW~~s~tln~~r~------  178 (445)
T KOG2139|consen  112 AFAVATNDDVVRIYDKSS-TCPTKLKSV------SQRNVTCLAWRPLSASELAVGCRAGICIWSDSRTLNANRN------  178 (445)
T ss_pred             hhhhhccCcEEEEeccCC-CCCceecch------hhcceeEEEeccCCcceeeeeecceeEEEEcCcccccccc------
Confidence            457888899999999776 222222221      4567999999999877777777788999987643211110      


Q ss_pred             CccccCCCCcceeecccCCCCCCCCccEEEeecCCCeEEEee--CCeEEEEecCCCeeEEEECCCCCCeeEEEEecCCCc
Q 001415          764 APQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS--GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNN  841 (1082)
Q Consensus       764 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~l~~~s--dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~  841 (1082)
                       ++.-....+.+    +.+.+| ..|+++.|.+||..+++++  +..|.|||.+++..+.......+.++-+.||| |+.
T Consensus       179 -~~~~s~~~~qv----l~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSP-dgd  251 (445)
T KOG2139|consen  179 -IRMMSTHHLQV----LQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSP-DGD  251 (445)
T ss_pred             -cccccccchhh----eeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcC-CCC
Confidence             00000001111    223334 7899999999999999997  57799999999887766655677899999999 899


Q ss_pred             EEEEEeCCCcEEEEecccceeeeeecccccCEEEEEEeCCCCEEEEEeCCCcEEEEEcCCccccc---------------
Q 001415          842 IIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQK---------------  906 (1082)
Q Consensus       842 ~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~---------------  906 (1082)
                      +|.+++-|+..++|............-..+.|...+|+|+|++|..+... .=++|.+.-.+...               
T Consensus       252 ~lfaAt~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~sg-sp~lysl~f~~~~~~~~~~~~~k~~llia  330 (445)
T KOG2139|consen  252 VLFAATCDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLFACSG-SPRLYSLTFDGEDSVFLRPQSIKRVLLIA  330 (445)
T ss_pred             EEEEecccceeeeehhcccceecceeccCCceeeeeecCCCCEEEEEEcC-CceEEEEeecCCCccccCcccceeeeeec
Confidence            99999999999999654332223333345699999999999987655432 23455543211100               


Q ss_pred             -ceeeeccCCCCCCCCCCcEEEEcCCCcEEEEEecC---------eEEEEEccCcceeeeeccCC-CCcceeEEEEcC--
Q 001415          907 -NRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHET---------QLAIFETTKLECVKQWVPRE-SSAPITHATFSC--  973 (1082)
Q Consensus       907 -~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~~d~---------~i~iwd~~~~~~~~~~~~~~-h~~~i~~l~~s~--  973 (1082)
                       .....+..+.....+.+.+++|.|.|.+||+...+         .|.+||....-.+....++. .......++|+|  
T Consensus       331 DL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~sp~vels~cg~i~ge~P~~IsF~pl~  410 (445)
T KOG2139|consen  331 DLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKSPPVELSYCGMIGGEYPAYISFGPLK  410 (445)
T ss_pred             cchhhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccccCceEEEecccccCCCCceEEeeecc
Confidence             00011222222334678899999999999995332         35667765444333222110 122255667766  


Q ss_pred             -CCceEEEeecCCcEEEEecC
Q 001415          974 -DSQLVYACFLDATVCVFSAA  993 (1082)
Q Consensus       974 -dg~~l~t~s~dg~v~vwd~~  993 (1082)
                       +|.+|..+-..|.+.-|++.
T Consensus       411 n~g~lLsiaWsTGriq~ypl~  431 (445)
T KOG2139|consen  411 NEGRLLSIAWSTGRIQRYPLT  431 (445)
T ss_pred             cCCcEEEEEeccCceEeeeeE
Confidence             57777777777877777654

>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]

Probab=99.55  E-value=3.2e-14  Score=135.14  Aligned_cols=168  Identities=20%  Similarity=0.298  Sum_probs=134.0

Q ss_pred             chHHHHHHHHHHHhhcChHHHHHHHHHhcCCCcc---------HHHHHHHhhccCHHHHHHHhccC--ccccCcccchhh
Q 001415            4 LSRELVFLILQFLDEEKFKETVHKLEQESGFFFN---------MKYFEDEVHNGNWDDVEKYLSGF--TKVDDNRYSMKI   72 (1082)
Q Consensus         4 ~~~~~~~li~q~L~~~g~~~s~~~L~~Esg~~~~---------~~~~~~~i~~g~w~~~~~~l~~~--~~~~~~~~~~~~   72 (1082)
                      -+.|+.+||++||...||.++|+.+..|+|+...         ...+|.+|..|+.++|++.+.++  ..++.+.   .+
T Consensus        25 ~~~d~n~LVmnylv~eg~~EaA~~Fa~e~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~PeiLd~n~---~l  101 (228)
T KOG2659|consen   25 MREDLNRLVMNYLVHEGYVEAAEKFAKESGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPEILDTNR---EL  101 (228)
T ss_pred             chhhHHHHHHHHHHhccHHHHHHHhccccCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChHHHccch---hH
Confidence            4678999999999999999999999999999771         56889999999999999999998  3334332   49


Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHhccccccccCHHHHHHHHHHhccccccchhhhccCCC--chHHHHHHHHHHHhh
Q 001415           73 FFEIRKQKYLEALDKHDRAKAVEILVKDLKVFSTFNEELFKEITQLLTLENFRENEQLSKYGD--TKSARSIMLVELKKL  150 (1082)
Q Consensus        73 ~~~l~~~~~lell~~~~~~~a~~~l~~~l~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~--~~~~r~~l~~~l~~~  150 (1082)
                      .|.|++|+++||++.+...+|+.|+|+++.|+...+++.++.|...+....++..+..+ ...  ....|+++++.+...
T Consensus       102 ~F~Lq~q~lIEliR~~~~eeal~F~q~~LA~~a~e~~~~~~elE~~l~lLvf~~~~~sp-~~~l~~~s~R~kvA~~vN~a  180 (228)
T KOG2659|consen  102 FFHLQQLHLIELIREGKTEEALEFAQTKLAPFAEENPKKMEELERTLALLVFELSQESP-SAELLSQSLRQKVASEVNSA  180 (228)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHcCCcccCc-HHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999988889999998887776665333222 111  355789999988877


Q ss_pred             cccCCCccccccCCCCcchHHHHHHHHHHHHHH
Q 001415          151 IEANPLFRDKLQFPNLKNSRLRTLINQSLNWQH  183 (1082)
Q Consensus       151 ~~~~~~~~~~~~~~~~p~~rL~~ll~~~~~~q~  183 (1082)
                      |-...-.        -...+|..|++...+.|.
T Consensus       181 iL~~~~~--------~~~~~l~~llk~~~~~~~  205 (228)
T KOG2659|consen  181 ILASQEH--------ESEPKLPFLLKLISWAQE  205 (228)
T ss_pred             HHHHhcc--------cccchHHHHHHHHHHHHH
Confidence            6442210        114488888877777663

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=99.53  E-value=8.9e-13  Score=138.51  Aligned_cols=276  Identities=13%  Similarity=0.191  Sum_probs=201.4

Q ss_pred             CCccccCCCCcee-eeccCCceeEEEecccCCCCccccccccCcccccceeEEEEccCCceeeecccCCeEEEeeccccc
Q 001415          674 GDVRSLADVKPRI-TEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTE  752 (1082)
Q Consensus       674 ~~~~~s~~~~~l~-~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~  752 (1082)
                      ..+..+|||++++ +|..--.|++||+....       +.+........|.-..++.|-..++....|..|.+..     
T Consensus        55 t~ik~s~DGqY~lAtG~YKP~ikvydlanLS-------LKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHa-----  122 (703)
T KOG2321|consen   55 TRIKVSPDGQYLLATGTYKPQIKVYDLANLS-------LKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHA-----  122 (703)
T ss_pred             ceeEecCCCcEEEEecccCCceEEEEcccce-------eeeeecccccceeEEEeccchhhheEeecCceeeehh-----
Confidence            3455699999975 55566699999998642       2222222334455555666666677777777776642     


Q ss_pred             cCCCCCcccccCccccCCCCcceeecccCCCCCCCCccEEEee-cCCCeEEEeeCCeEEEEecCCCeeEEEECCCCCCee
Q 001415          753 RNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALS-KNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAAT  831 (1082)
Q Consensus       753 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s-~dg~~l~~~sdg~i~iwd~~~~~~~~~~~~~~~~v~  831 (1082)
                                        ..|.-....+     ...-..++++ |...++++|+...|+-++++.|+-+..+....+.++
T Consensus       123 ------------------k~G~hy~~RI-----P~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN  179 (703)
T KOG2321|consen  123 ------------------KYGRHYRTRI-----PKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELN  179 (703)
T ss_pred             ------------------hcCeeeeeec-----CcCCccccccCCCccEEEeecCcceEEEEccccccccccccccccce
Confidence                              1222111111     1222344554 455677777788899999999999999998889999


Q ss_pred             EEEEecCCCcEEEEEeCCCcEEEEecccceeeeeec------cccc-----CEEEEEEeCCCCEEEEEeCCCcEEEEEcC
Q 001415          832 FLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLK------GHSK-----RITGLAFSHALNVLVSSGADSQLCVWSSD  900 (1082)
Q Consensus       832 ~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~------~h~~-----~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~  900 (1082)
                      ++..++ -..+||+|+.+|.|..||..+...+..+.      .|.+     .|+++.|+.||-.+++|..+|.|.|||+.
T Consensus       180 ~v~in~-~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLR  258 (703)
T KOG2321|consen  180 VVSINE-EHGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLR  258 (703)
T ss_pred             eeeecC-ccceEEecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcc
Confidence            999999 78899999999999999999876666554      2333     49999999999999999999999999999


Q ss_pred             CcccccceeeeccCCCCCCCCCCcEEEEcCC--CcEEEEEecCeEEEEEccCcceeeeeccCCCCcceeEEEEcCCCceE
Q 001415          901 GWEKQKNRFLQIPTGRTPTAQSDTRVQFHQD--QIHFLVVHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLV  978 (1082)
Q Consensus       901 ~~~~~~~~~~~~~~~~~~~~~~v~~~~fspd--g~~l~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~dg~~l  978 (1082)
                      +.+..    +....+..   ..|..+.|.+.  +..+++.....++|||-.+|+......+   ...++.+|+-|++.++
T Consensus       259 a~~pl----~~kdh~~e---~pi~~l~~~~~~~q~~v~S~Dk~~~kiWd~~~Gk~~asiEp---t~~lND~C~~p~sGm~  328 (703)
T KOG2321|consen  259 ASKPL----LVKDHGYE---LPIKKLDWQDTDQQNKVVSMDKRILKIWDECTGKPMASIEP---TSDLNDFCFVPGSGMF  328 (703)
T ss_pred             cCCce----eecccCCc---cceeeecccccCCCceEEecchHHhhhcccccCCceeeccc---cCCcCceeeecCCceE
Confidence            85432    22222222   46788888775  4566667778899999999999877764   5669999999999999


Q ss_pred             EEeecCCcEEEEecCCc
Q 001415          979 YACFLDATVCVFSAANL  995 (1082)
Q Consensus       979 ~t~s~dg~v~vwd~~~~  995 (1082)
                      +++.+++.+..|=+...
T Consensus       329 f~Ane~~~m~~yyiP~L  345 (703)
T KOG2321|consen  329 FTANESSKMHTYYIPSL  345 (703)
T ss_pred             EEecCCCcceeEEcccc
Confidence            99999888877766543

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.53  E-value=3.4e-13  Score=140.52  Aligned_cols=268  Identities=13%  Similarity=0.190  Sum_probs=174.7

Q ss_pred             EcCCCCEEEEEECCCcEEEEEecCCccceeecccccccccc-cccccCCCCccccCCCCceeeeccCCceeEEEecccCC
Q 001415          626 FNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASR-TSENSKNGDVRSLADVKPRITEESNDKSKVWKLTELSE  704 (1082)
Q Consensus       626 ~s~dg~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~  704 (1082)
                      ++-.|.+|+..- ...+++|+.+.+......+......... .+-.|  ......+++-.++++-.-|.+.+.|......
T Consensus       131 ~~~~gd~lcFnv-g~~lyv~~~~g~~~~~~pi~k~~y~gt~P~cHdf--n~~~a~~~g~dllIGf~tGqvq~idp~~~~~  207 (636)
T KOG2394|consen  131 QSGKGDRLCFNV-GRELYVYSYRGAADLSKPIDKREYKGTSPTCHDF--NSFTATPKGLDLLIGFTTGQVQLIDPINFEV  207 (636)
T ss_pred             ccCCCCEEEEec-CCeEEEEEccCcchhccchhhhcccCCCCceecc--cccccCCCCcceEEeeccCceEEecchhhHH
Confidence            334455555433 2457777776543333333222211110 01122  1122367778888888888888888765211


Q ss_pred             CCccccccccCcccccceeEEEEccCCc-eeeecccCCeEEEeeccccc--cCCCCCccccc---CccccCCCCc--cee
Q 001415          705 PNQCRSLRLPENLRATKISRLIFTNSGN-AILALASNAIHLLWKWQRTE--RNSSGKATASV---APQLWQPPSG--IMM  776 (1082)
Q Consensus       705 ~~~~~~~~~~~~~~~~~i~~~~~s~~~~-~l~~~~~d~~i~iw~~~~~~--~~~~~~~~~~~---~~~~~~~~~~--~~~  776 (1082)
                      ..   .+..........++++.|-|.+. .++++-.+|.+++||.....  ..+........   .+..|.....  .+.
T Consensus       208 sk---lfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~  284 (636)
T KOG2394|consen  208 SK---LFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVA  284 (636)
T ss_pred             HH---hhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCccc
Confidence            11   11111122457899999998664 56677778999999764221  11111111100   1111111100  011


Q ss_pred             ecccCCCCCCCCccEEEeecCCCeEEEee-CCeEEEEecCCCeeEEEECCCCCCeeEEEEecCCCcEEEEEeCCCcEEEE
Q 001415          777 TNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIY  855 (1082)
Q Consensus       777 ~~~~~~~~~~~~i~~l~~s~dg~~l~~~s-dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iw  855 (1082)
                      ...+    -...|..++|||||++||+.+ ||.++|||..+.+.+..++.--+...|++||| ||++|++|++|--|.||
T Consensus       285 ~w~~----~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSP-DGKyIvtGGEDDLVtVw  359 (636)
T KOG2394|consen  285 RWHI----GEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSP-DGKYIVTGGEDDLVTVW  359 (636)
T ss_pred             eeEe----ccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcC-CccEEEecCCcceEEEE
Confidence            1111    345789999999999999998 79999999999888888887788899999999 99999999999999999


Q ss_pred             ecccceeeeeecccccCEEEEEEeC-------------------------------C----C-------------CEEEE
Q 001415          856 NVRVDEVKSKLKGHSKRITGLAFSH-------------------------------A----L-------------NVLVS  887 (1082)
Q Consensus       856 d~~~~~~~~~l~~h~~~V~~l~~s~-------------------------------d----~-------------~~l~s  887 (1082)
                      .+...+.+..-.||.+.|..++|.|                               +    +             -++.+
T Consensus       360 Sf~erRVVARGqGHkSWVs~VaFDpytt~~ee~~~~~~~~~~~~~~~~~~~~r~~~~~S~~~~~~s~~~~~~~v~YRfGS  439 (636)
T KOG2394|consen  360 SFEERRVVARGQGHKSWVSVVAFDPYTTSTEEWNNFSGMDSTFSDVAHDFEIRANGTGSAEGCPLSSFNRINSVTYRFGS  439 (636)
T ss_pred             EeccceEEEeccccccceeeEeecccccccccccccccccccccchhcccccccCCCCCcCCCcccccccccceEEEeec
Confidence            9999999999999999999999972                               0    1             15788


Q ss_pred             EeCCCcEEEEEcCCccc
Q 001415          888 SGADSQLCVWSSDGWEK  904 (1082)
Q Consensus       888 ~s~Dg~i~vwd~~~~~~  904 (1082)
                      ++.|-.+.+||+....+
T Consensus       440 VGqDTqlcLWDlteD~L  456 (636)
T KOG2394|consen  440 VGQDTQLCLWDLTEDVL  456 (636)
T ss_pred             ccccceEEEEecchhhc
Confidence            89999999999987544

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.52  E-value=1.4e-13  Score=143.42  Aligned_cols=155  Identities=19%  Similarity=0.262  Sum_probs=118.5

Q ss_pred             CCCCceEEEEecCCCeEEEEEcCCCcEEEEEccccceeee-----------eceeeeccCCCCcccccccccCCCCceeE
Q 001415          357 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVL-----------RNFKVWDLGACSMPLQAALVKDPGVSVNR  425 (1082)
Q Consensus       357 h~~~v~~~~~spdg~~llasgs~dg~i~iwd~~~~~~~~~-----------~~~~~~d~~~~~~~~~~~~~~~h~~~V~~  425 (1082)
                      .+..|+|+.|-|.++.++.++-.+|.+++||.+---....           ..+-.|.-.....|..  -..--++.|..
T Consensus       218 ~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~--~w~~~~g~in~  295 (636)
T KOG2394|consen  218 NKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVA--RWHIGEGSINE  295 (636)
T ss_pred             cccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCccc--eeEeccccccc
Confidence            3589999999998888788888899999998632110000           0000010000001111  11222458999


Q ss_pred             EEEecCCCeEEEEeCCCeEEEEEccCCceeeEEEEeeccccCeeEEEecCCCCceEEEEEeCCCcEEEEEccCCceeEEe
Q 001415          426 VIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIF  505 (1082)
Q Consensus       426 l~~spdg~~las~~~d~~v~iwd~~~~~~~~~~~~~~~h~~~V~~l~fs~dg~~~~l~s~s~d~~i~vwd~~~~~~~~~~  505 (1082)
                      .+|||||++||+.+.||.++|+|..+.+.+.   .++.--+...|++|||||+  |+++|+.|-.|.||.+..++.+..-
T Consensus       296 f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg---~mkSYFGGLLCvcWSPDGK--yIvtGGEDDLVtVwSf~erRVVARG  370 (636)
T KOG2394|consen  296 FAFSPDGKYLATVSQDGFLRIFDFDTQELLG---VMKSYFGGLLCVCWSPDGK--YIVTGGEDDLVTVWSFEERRVVARG  370 (636)
T ss_pred             eeEcCCCceEEEEecCceEEEeeccHHHHHH---HHHhhccceEEEEEcCCcc--EEEecCCcceEEEEEeccceEEEec
Confidence            9999999999999999999999999977665   4555667899999999999  8999999999999999999999999


Q ss_pred             ecCCcCeEEEeee
Q 001415          506 EGHEAPVYSVCPH  518 (1082)
Q Consensus       506 ~~h~~~v~~~~~~  518 (1082)
                      .||..+|..++|.
T Consensus       371 qGHkSWVs~VaFD  383 (636)
T KOG2394|consen  371 QGHKSWVSVVAFD  383 (636)
T ss_pred             cccccceeeEeec
Confidence            9999999999987

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.51  E-value=4e-12  Score=124.48  Aligned_cols=241  Identities=14%  Similarity=0.189  Sum_probs=168.0

Q ss_pred             CccEEEeecCCCeEEEeeCCeEEEEecCCCeeEEEECCCCC--CeeEEEEecCCCcEEE-EEeCC------CcEEEEecc
Q 001415          788 AVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPP--AATFLAFHPQDNNIIA-IGMDD------SSIQIYNVR  858 (1082)
Q Consensus       788 ~i~~l~~s~dg~~l~~~sdg~i~iwd~~~~~~~~~~~~~~~--~v~~l~~sp~~~~~la-sg~~d------g~v~iwd~~  858 (1082)
                      ...+++|..|..-+++|.+...+||+.+..+.....+.+.+  .+..+-|-   .++|| +|+.+      ..|.|||=.
T Consensus         7 ~~lsvs~NQD~ScFava~~~Gfriyn~~P~ke~~~r~~~~~G~~~veMLfR---~N~laLVGGg~~pky~pNkviIWDD~   83 (346)
T KOG2111|consen    7 KTLSVSFNQDHSCFAVATDTGFRIYNCDPFKESASRQFIDGGFKIVEMLFR---SNYLALVGGGSRPKYPPNKVIIWDDL   83 (346)
T ss_pred             ceeEEEEccCCceEEEEecCceEEEecCchhhhhhhccccCchhhhhHhhh---hceEEEecCCCCCCCCCceEEEEecc
Confidence            34569999999999999998899999986544333332222  23333332   23443 44433      479999966


Q ss_pred             cceeeeeecccccCEEEEEEeCCCCEEEEEeCCCcEEEEEcCCcccccceeeeccCCCCCCCCCCcEEEEcCCCcEEEE-
Q 001415          859 VDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-  937 (1082)
Q Consensus       859 ~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~-  937 (1082)
                      ..+++.++. ..++|.++.+++|  .|++. -++.|.||.....-.. ...+......    .++.+++=+.+..+||. 
T Consensus        84 k~~~i~el~-f~~~I~~V~l~r~--riVvv-l~~~I~VytF~~n~k~-l~~~et~~NP----kGlC~~~~~~~k~~LafP  154 (346)
T KOG2111|consen   84 KERCIIELS-FNSEIKAVKLRRD--RIVVV-LENKIYVYTFPDNPKL-LHVIETRSNP----KGLCSLCPTSNKSLLAFP  154 (346)
T ss_pred             cCcEEEEEE-eccceeeEEEcCC--eEEEE-ecCeEEEEEcCCChhh-eeeeecccCC----CceEeecCCCCceEEEcC
Confidence            677777776 6688999999865  45555 3577999999853221 2222222211    22333333334455555 


Q ss_pred             E-ecCeEEEEEccCcceeeeeccCCCCcceeEEEEcCCCceEEEeecCCc-EEEEecCCceeeeeeCCCeecCCCCCCCC
Q 001415          938 V-HETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDAT-VCVFSAANLKLRCRINPSAYLPAGVSSSN 1015 (1082)
Q Consensus       938 ~-~d~~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~dg~~l~t~s~dg~-v~vwd~~~~~~~~~~~~~~~~~~gh~~~~ 1015 (1082)
                      + .-|+|.|-|+...+.-......+|.+.|.+++.+-+|..+||+|..|+ |||||..+|.+++.++.      |...  
T Consensus       155 g~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RR------G~d~--  226 (346)
T KOG2111|consen  155 GFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRR------GVDR--  226 (346)
T ss_pred             CCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeec------CCch--
Confidence            4 458999999876665333444589999999999999999999999998 79999999999998772      3112  


Q ss_pred             ceeeEEEEeCCCCCeEEEEecCCcEEEEccCCCC
Q 001415         1016 VHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESE 1049 (1082)
Q Consensus      1016 v~~~~~~~~~~d~~~l~s~~~dg~v~vW~~~~~~ 1049 (1082)
                      ....+++|+| +..+||++|+-|+|.++.+....
T Consensus       227 A~iy~iaFSp-~~s~LavsSdKgTlHiF~l~~~~  259 (346)
T KOG2111|consen  227 ADIYCIAFSP-NSSWLAVSSDKGTLHIFSLRDTE  259 (346)
T ss_pred             heEEEEEeCC-CccEEEEEcCCCeEEEEEeecCC
Confidence            2344999999 58999999999999999998765

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=99.50  E-value=2.8e-12  Score=134.87  Aligned_cols=259  Identities=15%  Similarity=0.159  Sum_probs=176.0

Q ss_pred             eeeecCCCCCceEEEEecCCCeEEEEEcCCCcEEEEEccccceeeeeceeeeccCCCCcccccccccCCCCceeEEEEec
Q 001415          351 VTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP  430 (1082)
Q Consensus       351 ~~~~~~h~~~v~~~~~spdg~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~sp  430 (1082)
                      +++-++|...-+.|..||||+|++|+|...-.|++||+..-.+-..+                   .-....|.-.-+|-
T Consensus        44 LiQdfe~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFER-------------------hlDae~V~feiLsD  104 (703)
T KOG2321|consen   44 LIQDFEMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFER-------------------HLDAEVVDFEILSD  104 (703)
T ss_pred             HHHhcCCccccceeEecCCCcEEEEecccCCceEEEEcccceeeeee-------------------cccccceeEEEecc
Confidence            45667799999999999999999999999999999999765443221                   11123455566666


Q ss_pred             CCCeEEEEeCCCeEEEEEccCCceeeEEEEeeccccCeeEEEecCCCCceEEEEEeCCCcEEEEEccCCceeEEeecCCc
Q 001415          431 DGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEA  510 (1082)
Q Consensus       431 dg~~las~~~d~~v~iwd~~~~~~~~~~~~~~~h~~~V~~l~fs~dg~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~  510 (1082)
                      |-..++.-..|.+|.+-.--+ ....  ..+.   ..-..++++.-...  |+.++....|+-.+++.|+.+..+....+
T Consensus       105 D~SK~v~L~~DR~IefHak~G-~hy~--~RIP---~~GRDm~y~~~scD--ly~~gsg~evYRlNLEqGrfL~P~~~~~~  176 (703)
T KOG2321|consen  105 DYSKSVFLQNDRTIEFHAKYG-RHYR--TRIP---KFGRDMKYHKPSCD--LYLVGSGSEVYRLNLEQGRFLNPFETDSG  176 (703)
T ss_pred             chhhheEeecCceeeehhhcC-eeee--eecC---cCCccccccCCCcc--EEEeecCcceEEEEccccccccccccccc
Confidence            777777777787776643222 1111  0111   11224444433332  44444456788899999999999988889


Q ss_pred             CeEEEeeeecCCceEEEEecCCCcEEEEecCCCCceeeecCCCCceEEEEEccCCCeeeecccccceeEEEecCCCCEEE
Q 001415          511 PVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFL  590 (1082)
Q Consensus       511 ~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~i~~~~~~~~~~~l~  590 (1082)
                      .++++.+++..  .+|++|+.+|.|..||.+.......+..... |.+..         .+.....++.+.|+.+|-.++
T Consensus       177 ~lN~v~in~~h--gLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~-v~s~p---------g~~~~~svTal~F~d~gL~~a  244 (703)
T KOG2321|consen  177 ELNVVSINEEH--GLLACGTEDGVVEFWDPRDKSRVGTLDAASS-VNSHP---------GGDAAPSVTALKFRDDGLHVA  244 (703)
T ss_pred             cceeeeecCcc--ceEEecccCceEEEecchhhhhheeeecccc-cCCCc---------cccccCcceEEEecCCceeEE
Confidence            99999886544  5888999999999999987665544433222 11111         011223566777777777999


Q ss_pred             EEeCCCeEEEEECCCcceEEEEecCCCCCCcCeEEEcCC--CCEEEEEECCCcEEEEEecCC
Q 001415          591 AAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKD--GCLLAVSTNDNGIKILATSDG  650 (1082)
Q Consensus       591 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~d--g~~l~~~~~dg~i~iwd~~~~  650 (1082)
                      +|..+|.+.|||+++.+++..-. |+...+|..+.|.+.  ++.+++ .....++|||-.+|
T Consensus       245 VGts~G~v~iyDLRa~~pl~~kd-h~~e~pi~~l~~~~~~~q~~v~S-~Dk~~~kiWd~~~G  304 (703)
T KOG2321|consen  245 VGTSTGSVLIYDLRASKPLLVKD-HGYELPIKKLDWQDTDQQNKVVS-MDKRILKIWDECTG  304 (703)
T ss_pred             eeccCCcEEEEEcccCCceeecc-cCCccceeeecccccCCCceEEe-cchHHhhhcccccC
Confidence            99999999999999988876554 444557889999774  344444 44577899998877

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.50  E-value=3.8e-12  Score=143.83  Aligned_cols=221  Identities=11%  Similarity=0.065  Sum_probs=137.2

Q ss_pred             eecCCCCCceEEEEecCCCeEEEEEc--CCCcEEEEEccccceeeeeceeeeccCCCCcccccccccCCCCceeEEEEec
Q 001415          353 RTLNQGSSPMSMDFHPVQQTLLLVGT--NVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP  430 (1082)
Q Consensus       353 ~~~~h~~~v~~~~~spdg~~llasgs--~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~sp  430 (1082)
                      .+..+...+.+.+|||||++|+.+..  .+..|.+|++.+|+...                    +....+.+..++|||
T Consensus       193 ~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~--------------------l~~~~~~~~~~~~SP  252 (429)
T PRK03629        193 VVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ--------------------VASFPRHNGAPAFSP  252 (429)
T ss_pred             EeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEE--------------------ccCCCCCcCCeEECC
Confidence            34557788999999999997554432  24579999998876443                    222233455689999


Q ss_pred             CCCeEEEE-eCCC--eEEEEEccCCceeeEEEEeeccccCeeEEEecCCCCceEEEEEeC-CCcEEEE--EccCCceeEE
Q 001415          431 DGSLFGVA-YSRH--IVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGD-DKTIKVW--DATNGAKQYI  504 (1082)
Q Consensus       431 dg~~las~-~~d~--~v~iwd~~~~~~~~~~~~~~~h~~~V~~l~fs~dg~~~~l~s~s~-d~~i~vw--d~~~~~~~~~  504 (1082)
                      ||++|+.. +.+|  .|.+||+++++...    +..+...+....|+|||+.  |+..+. ++...||  |+.++.. ..
T Consensus       253 DG~~La~~~~~~g~~~I~~~d~~tg~~~~----lt~~~~~~~~~~wSPDG~~--I~f~s~~~g~~~Iy~~d~~~g~~-~~  325 (429)
T PRK03629        253 DGSKLAFALSKTGSLNLYVMDLASGQIRQ----VTDGRSNNTEPTWFPDSQN--LAYTSDQAGRPQVYKVNINGGAP-QR  325 (429)
T ss_pred             CCCEEEEEEcCCCCcEEEEEECCCCCEEE----ccCCCCCcCceEECCCCCE--EEEEeCCCCCceEEEEECCCCCe-EE
Confidence            99999876 3344  58899998876433    4445567889999999994  544443 4444555  6666544 34


Q ss_pred             eecCCcCeEEEeeeecCCceEEEEecCC---CcEEEEecCCCCceeeecCCCCceEEEEEccCCCeeeecccccceeEEE
Q 001415          505 FEGHEAPVYSVCPHHKENIQFIFSTALD---GKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQ  581 (1082)
Q Consensus       505 ~~~h~~~v~~~~~~~~~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~i~~~~  581 (1082)
                      +..+........|++  +|++|+..+.+   ..|.+||+.++.... +.. ........                     
T Consensus       326 lt~~~~~~~~~~~Sp--DG~~Ia~~~~~~g~~~I~~~dl~~g~~~~-Lt~-~~~~~~p~---------------------  380 (429)
T PRK03629        326 ITWEGSQNQDADVSS--DGKFMVMVSSNGGQQHIAKQDLATGGVQV-LTD-TFLDETPS---------------------  380 (429)
T ss_pred             eecCCCCccCEEECC--CCCEEEEEEccCCCceEEEEECCCCCeEE-eCC-CCCCCCce---------------------
Confidence            443444455566665  44667665443   357888887654322 211 11112333                     


Q ss_pred             ecCCCCEEEEEeCCCe---EEEEECCCcceEEEEecCCCCCCcCeEEEcC
Q 001415          582 FDTTKNRFLAAGDDFS---IKFWDMDSVQLLTSIDADGGLPASPRIRFNK  628 (1082)
Q Consensus       582 ~~~~~~~l~~~~~dg~---i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~  628 (1082)
                      |+|||..++.++.++.   +.++++. |.....+..+.+  .+...+|+|
T Consensus       381 ~SpDG~~i~~~s~~~~~~~l~~~~~~-G~~~~~l~~~~~--~~~~p~Wsp  427 (429)
T PRK03629        381 IAPNGTMVIYSSSQGMGSVLNLVSTD-GRFKARLPATDG--QVKFPAWSP  427 (429)
T ss_pred             ECCCCCEEEEEEcCCCceEEEEEECC-CCCeEECccCCC--CcCCcccCC
Confidence            4555557777776553   6777774 555555554333  467788876

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=99.49  E-value=3.4e-11  Score=129.50  Aligned_cols=550  Identities=10%  Similarity=0.077  Sum_probs=304.8

Q ss_pred             CCCCCceEEEEecCCCeEEEEEcCCCcEEEEEccccceeeeeceeeeccCCCCcccccccccCCCCceeEEEEecCCCeE
Q 001415          356 NQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLF  435 (1082)
Q Consensus       356 ~h~~~v~~~~~spdg~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l  435 (1082)
                      .......|++|.....| +|+|+.||.++|-.+.+...-..    .--+...+.-.....+.||.+.|.-+.|+.+.+.|
T Consensus        12 PnnvkL~c~~WNke~gy-IAcgG~dGlLKVlKl~t~t~d~~----~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKL   86 (1189)
T KOG2041|consen   12 PNNVKLHCAEWNKESGY-IACGGADGLLKVLKLGTDTTDLN----KSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKL   86 (1189)
T ss_pred             CCCceEEEEEEcccCCe-EEeccccceeEEEEccccCCccc----ccccccccccchhhhhccCcceEEEEEeccccccc
Confidence            34566789999999885 99999999999998876432211    11111222222334689999999999999999999


Q ss_pred             EEEeCCCeEEEEEccCCceeeEEEEeeccccCeeEEEecCCCCceEEEEEeCCCcEEEEEccCCcee-EEeecCCcCeEE
Q 001415          436 GVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQ-YIFEGHEAPVYS  514 (1082)
Q Consensus       436 as~~~d~~v~iwd~~~~~~~~~~~~~~~h~~~V~~l~fs~dg~~~~l~s~s~d~~i~vwd~~~~~~~-~~~~~h~~~v~~  514 (1082)
                      -+...+|.|.+|-+-.|.-.... .-......|.+++|..||.  .++..-.||.|.|=.++..+.- +.+++.  ....
T Consensus        87 TtSDt~GlIiVWmlykgsW~EEM-iNnRnKSvV~SmsWn~dG~--kIcIvYeDGavIVGsvdGNRIwgKeLkg~--~l~h  161 (1189)
T KOG2041|consen   87 TTSDTSGLIIVWMLYKGSWCEEM-INNRNKSVVVSMSWNLDGT--KICIVYEDGAVIVGSVDGNRIWGKELKGQ--LLAH  161 (1189)
T ss_pred             cccCCCceEEEEeeecccHHHHH-hhCcCccEEEEEEEcCCCc--EEEEEEccCCEEEEeeccceecchhcchh--eccc
Confidence            99999999999998877533211 1123456789999999999  5777778888877665432211 122221  1234


Q ss_pred             EeeeecCCceEEEEecCCCcEEEEecCCCCceeeecCCCCc-eEE-EEEccCCCeeeecccccceeEEEecCCCCEEEEE
Q 001415          515 VCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRW-CTT-MAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAA  592 (1082)
Q Consensus       515 ~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~-v~~-~~~s~d~~~~~~~~~~~~i~~~~~~~~~~~l~~~  592 (1082)
                      +.|+++.  ..++.+-..|.+.++|....-..   ..+... |.. -.++.-+.+ +.++....-...-..|+...|+++
T Consensus       162 v~ws~D~--~~~Lf~~ange~hlydnqgnF~~---Kl~~~c~Vn~tg~~s~~~~k-ia~i~w~~g~~~~v~pdrP~lavc  235 (1189)
T KOG2041|consen  162 VLWSEDL--EQALFKKANGETHLYDNQGNFER---KLEKDCEVNGTGIFSNFPTK-IAEIEWNTGPYQPVPPDRPRLAVC  235 (1189)
T ss_pred             eeecccH--HHHHhhhcCCcEEEecccccHHH---hhhhceEEeeeeeecCCCcc-ccceeeccCccccCCCCCCEEEEE
Confidence            5665543  67777778899999987532111   111111 111 112222211 111111111122234678899999


Q ss_pred             eCCCeEEEEECCCcceEEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEecCCccceeecccccccccccccccC
Q 001415          593 GDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSK  672 (1082)
Q Consensus       593 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  672 (1082)
                      ..+|.+.+-.-.....-..+...   ..+....|+++|..|++++.+..-.- +..+.                 .+.| 
T Consensus       236 y~nGr~QiMR~eND~~Pvv~dtg---m~~vgakWnh~G~vLAvcG~~~da~~-~~d~n-----------------~v~F-  293 (1189)
T KOG2041|consen  236 YANGRMQIMRSENDPEPVVVDTG---MKIVGAKWNHNGAVLAVCGNDSDADE-PTDSN-----------------KVHF-  293 (1189)
T ss_pred             EcCceehhhhhcCCCCCeEEecc---cEeecceecCCCcEEEEccCcccccC-ccccc-----------------eEEE-
Confidence            99999988755443332223221   24788999999999999886532100 00000                 0111 


Q ss_pred             CCCccccCCCCceeeeccCCceeEEEecccCCCCccccccccCcccccceeEEEEccCCceeeecccCCeEEEeeccccc
Q 001415          673 NGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTE  752 (1082)
Q Consensus       673 ~~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~  752 (1082)
                           .+|-|+.+      |+                 +..    ....|++++|-..|-.++.+ -|+.|.+=++...-
T Consensus       294 -----ysp~G~i~------gt-----------------lkv----pg~~It~lsWEg~gLriA~A-vdsfiyfanIRP~y  340 (1189)
T KOG2041|consen  294 -----YSPYGHIV------GT-----------------LKV----PGSCITGLSWEGTGLRIAIA-VDSFIYFANIRPEY  340 (1189)
T ss_pred             -----eccchhhe------EE-----------------Eec----CCceeeeeEEcCCceEEEEE-ecceEEEEeecccc
Confidence                 02222211      00                 111    23445555555544333222 22333332222110


Q ss_pred             ----------cCCCCCcccccCccccCCCCcceeecccCCCCCCCCccEEEeecCCCeEEEee-CCeEEEEec-CCCeeE
Q 001415          753 ----------RNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNM-MTFKTM  820 (1082)
Q Consensus       753 ----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~l~~~s-dg~i~iwd~-~~~~~~  820 (1082)
                                +...+.......+.+||..+.......      -....+++++.+--.|+.-. ++.+.-++. ++...+
T Consensus       341 kWgy~e~TvVy~y~~~e~p~y~i~Fwdtk~nek~vK~------V~~~~~~a~~~ehCvL~~~~d~~~i~e~s~le~~~~~  414 (1189)
T KOG2041|consen  341 KWGYIEETVVYVYQKEELPQYGIMFWDTKTNEKTVKT------VTHFENMAFYREHCVLINRQDDGVIPEYSTLENRSRV  414 (1189)
T ss_pred             eEEEeeeEEEEEEccCCCcceEEEEEecccChhhhhh------hcceeehheecccEEEEeccccCCCcchhhhhcccce
Confidence                      001111222234567777665433221      22344666666554555444 355554422 222211


Q ss_pred             EEECC-------CCCCeeEE--EEecCCCcEEEEEeCCCcEEEEeccccee-----------------------------
Q 001415          821 ATFMP-------PPPAATFL--AFHPQDNNIIAIGMDDSSIQIYNVRVDEV-----------------------------  862 (1082)
Q Consensus       821 ~~~~~-------~~~~v~~l--~~sp~~~~~lasg~~dg~v~iwd~~~~~~-----------------------------  862 (1082)
                      ..+.-       -+...+.+  .|---++..++.++.+ .+.+|.....+.                             
T Consensus       415 ~~l~LCNSIGT~lD~kytdirP~Fv~vn~~~vviAS~e-~~~iWhy~~pK~~s~l~~~k~rkegr~h~Ddtp~ga~d~~l  493 (1189)
T KOG2041|consen  415 YFLQLCNSIGTSLDYKYTDIRPKFVCVNGICVVIASEE-RYFIWHYVLPKFNSVLAGVKIRKEGRFHGDDTPEGAQDRTL  493 (1189)
T ss_pred             EEEeeecccCCcCCCCcceeeeeEEEecceEEEEeccc-cEEEEEEeccchhhhhhhhhhcccccccCCCCccchhhcee
Confidence            11110       01111111  1111155677777765 688887632111                             


Q ss_pred             ---eeeecccccCEEEEEEeCCCCEEEEEeCCCcEEEEEcCCcccccceeeeccCCCCCCCCCCcEEEEcCCCcEEEE-E
Q 001415          863 ---KSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-V  938 (1082)
Q Consensus       863 ---~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~-~  938 (1082)
                         ..++.|..++|.+++.+  .++|..+-..|.|.-|.+......     ...    +....+.+++..-+...+|+ -
T Consensus       494 ~ys~kt~~G~~DpICAl~~s--dk~l~vareSG~I~rySl~nv~l~-----n~y----~~n~~~y~~~lNCnstRlAiId  562 (1189)
T KOG2041|consen  494 EYSTKTLLGSKDPICALCIS--DKFLMVARESGGIYRYSLNNVVLT-----NSY----PVNPSIYSIKLNCNSTRLAIID  562 (1189)
T ss_pred             eccceeeccCCCcceeeeec--ceEEEEEeccCceEEEEecceeee-----ecc----ccCchheeEeeccCcchhhhhh
Confidence               12344566788888886  678899999999999999884321     111    11146788898888888887 4


Q ss_pred             ecCeEEEEEcc---CcceeeeeccCCCCcceeEEEEcCCCceEEEeecCCcEEEEecCCc
Q 001415          939 HETQLAIFETT---KLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANL  995 (1082)
Q Consensus       939 ~d~~i~iwd~~---~~~~~~~~~~~~h~~~i~~l~~s~dg~~l~t~s~dg~v~vwd~~~~  995 (1082)
                      .-|.+.+.|+.   +|+.+..+.. .....|+.+.|..|...|+.--+...+.|++-.+-
T Consensus       563 ~~gv~tf~dLd~d~~g~ql~~~~~-~errDVWd~~Wa~dNp~llAlmeKtrmyifrgndp  621 (1189)
T KOG2041|consen  563 LVGVVTFQDLDYDFDGDQLKLIYT-SERRDVWDYEWAQDNPNLLALMEKTRMYIFRGNDP  621 (1189)
T ss_pred             hhceeeeeecccccCcceeeeeeh-hhhhhhhhhhhccCCchHHhhhhhceEEEecCcCc
Confidence            56777777765   4444443221 23567889999888876665555566777665443

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=99.48  E-value=1.4e-08  Score=123.28  Aligned_cols=539  Identities=12%  Similarity=0.144  Sum_probs=288.7

Q ss_pred             CCCCceEEEEecCCCeEEEEEcCCCcEEEE----EccccceeeeeceeeeccCCCCcccccccccCCCCceeEEEEecCC
Q 001415          357 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLW----EVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDG  432 (1082)
Q Consensus       357 h~~~v~~~~~spdg~~llasgs~dg~i~iw----d~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg  432 (1082)
                      ..+.|.++.|-+|... ++.+..+|.|.+.    +..+...-.                    ...-...|.|++||||+
T Consensus        74 ~~~~ivs~~yl~d~~~-l~~~~~~Gdi~~~~~~~~~~~~~~E~--------------------VG~vd~GI~a~~WSPD~  132 (928)
T PF04762_consen   74 PNDKIVSFQYLADSES-LCIALASGDIILVREDPDPDEDEIEI--------------------VGSVDSGILAASWSPDE  132 (928)
T ss_pred             CCCcEEEEEeccCCCc-EEEEECCceEEEEEccCCCCCceeEE--------------------EEEEcCcEEEEEECCCc
Confidence            4578999999999985 7778889999999    554443322                    33446699999999999


Q ss_pred             CeEEEEeCCCeEEEEEcc----C---------C--cee--------eEE----------------------EEeeccccC
Q 001415          433 SLFGVAYSRHIVQIYSYH----G---------G--DEV--------RQH----------------------LEIDAHVGG  467 (1082)
Q Consensus       433 ~~las~~~d~~v~iwd~~----~---------~--~~~--------~~~----------------------~~~~~h~~~  467 (1082)
                      ..||..+.++++.+.+-.    .         |  +.+        .+.                      ..+. +.+.
T Consensus       133 Ella~vT~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s-~dd~  211 (928)
T PF04762_consen  133 ELLALVTGEGNLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLS-WDDG  211 (928)
T ss_pred             CEEEEEeCCCEEEEEeccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccc-cCCC
Confidence            999999999988876321    0         0  000        000                      0011 3334


Q ss_pred             eeEEEecCCCCceEEEEEeC------CCcEEEEEccCCceeEEeecCCcCeEEEeeeecCCceEEEEecC---CCcEEEE
Q 001415          468 VNDIAFSHPNKQLCVITCGD------DKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTAL---DGKIKAW  538 (1082)
Q Consensus       468 V~~l~fs~dg~~~~l~s~s~------d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~---dg~i~iw  538 (1082)
                      -..++|-.||.  ++|..+.      -+.+|||+ +.|....+-..-.+--.+++|-|++  ++|++...   ...|.+|
T Consensus       212 ~~~ISWRGDG~--yFAVss~~~~~~~~R~iRVy~-ReG~L~stSE~v~gLe~~l~WrPsG--~lIA~~q~~~~~~~VvFf  286 (928)
T PF04762_consen  212 RVRISWRGDGE--YFAVSSVEPETGSRRVIRVYS-REGELQSTSEPVDGLEGALSWRPSG--NLIASSQRLPDRHDVVFF  286 (928)
T ss_pred             ceEEEECCCCc--EEEEEEEEcCCCceeEEEEEC-CCceEEeccccCCCccCCccCCCCC--CEEEEEEEcCCCcEEEEE
Confidence            56789999999  6776653      25799999 5577655554334444556776544  67777754   2345555


Q ss_pred             ecCCCCceeeecCCCCceEEEEEccCCCeeeecccccceeEEEecCCCCEEEEEeCCCeEEEEECCCcceE--EEEecCC
Q 001415          539 LYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLL--TSIDADG  616 (1082)
Q Consensus       539 d~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~--~~~~~~~  616 (1082)
                      .-.. -....+..        .+.++         ...+..+.|++++..|+..-.|. |.+|-..+....  +.+....
T Consensus       287 ErNG-LrhgeF~l--------~~~~~---------~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~  347 (928)
T PF04762_consen  287 ERNG-LRHGEFTL--------RFDPE---------EEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSS  347 (928)
T ss_pred             ecCC-cEeeeEec--------CCCCC---------CceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccC
Confidence            3221 11111111        11111         12344555666666777766555 999988776543  2233222


Q ss_pred             CCCCcCeEEEcC-CCCEEEEEECCCcEEEEEecCCccceeecccccccccccccccCCCCccccCCCCceeeeccCCcee
Q 001415          617 GLPASPRIRFNK-DGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKNGDVRSLADVKPRITEESNDKSK  695 (1082)
Q Consensus       617 ~~~~i~~~~~s~-dg~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~  695 (1082)
                      . ..+..+.|+| +...|.+.+.+|.+..++..-..     ..+..         .       +|+..-.+..-...++.
T Consensus       348 ~-~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v-----~~s~~---------~-------~~~D~g~vaVIDG~~ll  405 (928)
T PF04762_consen  348 S-ESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWDV-----SRSPG---------S-------SPNDNGTVAVIDGNKLL  405 (928)
T ss_pred             C-CCCCceEECCCCCCEEEEEecCCcEEEEEEEEEE-----EecCC---------C-------CccCceEEEEEeCCeEE
Confidence            2 2345699999 55668888887888776653210     00000         0       11112222222223555


Q ss_pred             EEEecccCCCCccccccccCcccccceeEEEEccCCceeeecccCCeEEEeeccccccCCCCCcccccCccccCCCCcce
Q 001415          696 VWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIM  775 (1082)
Q Consensus       696 iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  775 (1082)
                      +-.+.....+.......+.   -...|.+++|++++..+++...||.+.+|.+................+   ...  ..
T Consensus       406 lTpf~~a~VPPPMs~~~l~---~~~~v~~vaf~~~~~~~avl~~d~~l~~~~~~~~~~~~~~~~~~~~~~---~~~--~~  477 (928)
T PF04762_consen  406 LTPFRRAVVPPPMSSYELE---LPSPVNDVAFSPSNSRFAVLTSDGSLSIYEWDLKNMWSVKPPKLLSSI---SLD--SM  477 (928)
T ss_pred             EecccccCCCchHhceEEc---CCCCcEEEEEeCCCCeEEEEECCCCEEEEEecCCCcccccCcchhhhc---ccc--cc
Confidence            5554443333332222211   346899999999998899999999999998664432210000000000   000  00


Q ss_pred             eecccCCCCCCCCccEEEeecCCCeEEEeeC----CeEEEEecCCCe---eEEEECCCCCCeeEEEEecCCCcEEEEEeC
Q 001415          776 MTNDVTDSNPEEAVPCFALSKNDSYVMSASG----GKISLFNMMTFK---TMATFMPPPPAATFLAFHPQDNNIIAIGMD  848 (1082)
Q Consensus       776 ~~~~~~~~~~~~~i~~l~~s~dg~~l~~~sd----g~i~iwd~~~~~---~~~~~~~~~~~v~~l~~sp~~~~~lasg~~  848 (1082)
                      ..  .........+..++|..+..+++....    ..+.+++.....   ...........+..+...+ +...++.-..
T Consensus       478 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~q~~  554 (928)
T PF04762_consen  478 DI--SDSELPLGSLRQLAWLNDDTLLVLSDSDSNQSKIVLVDIDDSENSASVESSTEVDGVVLIISSSP-DSGSLYIQTN  554 (928)
T ss_pred             cc--cccccccccEEEEEEeCCCEEEEEEecCcccceEEEEEeccCCCceeEEEEeccCceEEEEeeCC-CCcEEEEEEC
Confidence            00  000013455778888888877766653    468888874332   2333333445555566665 4444666777


Q ss_pred             CCcEEEEeccccee-eeeecccccCEEEEEEeCCCC---EEEEEeCCCcEEEEEcCCcccccceeeeccCCCCCCCCCCc
Q 001415          849 DSSIQIYNVRVDEV-KSKLKGHSKRITGLAFSHALN---VLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDT  924 (1082)
Q Consensus       849 dg~v~iwd~~~~~~-~~~l~~h~~~V~~l~~s~d~~---~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~  924 (1082)
                      +|.+...+...... +..+..-... ..+....+..   .++.-+..|.+.+   ++.      .+.         ..++
T Consensus       555 ~G~v~~~~~~~~~~~~~~fp~~c~~-~~~~~~~~~~~~~~~~GLs~~~~Ly~---n~~------~la---------~~~t  615 (928)
T PF04762_consen  555 DGKVFQLSSDGELSQIVKFPQPCPW-MEVCQINGSEDKRVLFGLSSNGRLYA---NSR------LLA---------SNCT  615 (928)
T ss_pred             CCEEEEeecCCCccccccCCCCCcE-EEEEEECCccceeEEEEECCCCEEEE---CCE------EEe---------cCCc
Confidence            99888766554322 1223222122 2222233332   3444444443332   221      111         3456


Q ss_pred             EEEEcCCCcEEEEEecCeEEEEEccC-cceeeeeccCC----CCcceeEEEEcCCCceEEEeecCCcEEEEecCCceee
Q 001415          925 RVQFHQDQIHFLVVHETQLAIFETTK-LECVKQWVPRE----SSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLR  998 (1082)
Q Consensus       925 ~~~fspdg~~l~~~~d~~i~iwd~~~-~~~~~~~~~~~----h~~~i~~l~~s~dg~~l~t~s~dg~v~vwd~~~~~~~  998 (1082)
                      ++.+. +..+|.+.....+++.++.. ........ ..    +...++.   -.-|..|+++--...=.|..+.-|.+-
T Consensus       616 SF~v~-~~~Ll~TT~~h~l~fv~L~~~~~~l~~~~-~~~~~~~de~~R~---VERGsriVt~vp~~~~vVLQmPRGNLE  689 (928)
T PF04762_consen  616 SFAVT-DSFLLFTTTQHTLKFVHLNSSVEDLEIPP-DSPENSYDERCRR---VERGSRIVTAVPSDTSVVLQMPRGNLE  689 (928)
T ss_pred             eEEEE-cCEEEEEecCceEEEEECcCchhhccccc-Ccccccccccccc---CccCCEEEEEeCCCceEEEEcCCCchh
Confidence            66663 22334446667788888871 11111111 00    0112222   235777777764445556677776653

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.47  E-value=5.8e-14  Score=153.74  Aligned_cols=301  Identities=19%  Similarity=0.219  Sum_probs=200.5

Q ss_pred             chHHHHHHHHHHHHHHhhCCCCCCCCCCcccccccccCCCCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCC
Q 001415          168 NSRLRTLINQSLNWQHQLCKNPRPNPDIKTLFVDHTCGQPNGARAPSPANNPLLGSLPKAGVFPPLGAHGPFQPTPAPVP  247 (1082)
Q Consensus       168 ~~rL~~ll~~~~~~q~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (1082)
                      +-.|..|+.|+++.|+.+|++|.+.++.++||..|+|+.|...+                                    
T Consensus      1012 ~~sLdSIVt~Ylr~QH~~CknPVtTcPPfSLf~pH~CPEpk~~~------------------------------------ 1055 (1516)
T KOG1832|consen 1012 RLSLDSIVTQYLRHQHRQCKNPVTTCPPFSLFHPHVCPEPKRLL------------------------------------ 1055 (1516)
T ss_pred             CCcHHHHHHHHHHHHHHhhcCCcccCCChhhcCCccCCChHHHh------------------------------------
Confidence            45899999999999999999999999999999999999832111                                    


Q ss_pred             CCccccccCCCCcccCCcccCccCCCCCCcccccccCCCCCCCCCCCCCCCCCccccccccCCCCccccccccccccccc
Q 001415          248 TPLAGWMSNPPTVTHPAVSGGAIGLGSPSIPAAALKHPRTPPTNPSVDYPSGDSDHLSKRTRPIGISDEINLPVNVLPVS  327 (1082)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~v~~~~~vw~~~  327 (1082)
                                               ..+-|...++.+...++...++.....|.+.+-.|+|.             |   
T Consensus      1056 -------------------------~ap~N~t~Rl~~rel~~~y~gV~g~~~dr~~IFSRFr~-------------w--- 1094 (1516)
T KOG1832|consen 1056 -------------------------EAPLNMTGRLGTRELQSFYSGVHGNRRDRQFIFSRFRS-------------W--- 1094 (1516)
T ss_pred             -------------------------hcchhhhhcccchhhcCcccccccCcccchhhHhhccc-------------c---
Confidence                                     11112222222333333334555555555555444432             1   


Q ss_pred             cccCccccCCCccCCCCCCCCcceeeecCCCCCceEEEEecCCCeEEEEEcCCCcEEEEEccccceeeeeceeeeccCCC
Q 001415          328 FTGHSHSHSHSQAFSTPEDLPKTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGAC  407 (1082)
Q Consensus       328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~  407 (1082)
                                              ...-.|+...+|++||-+.++ |++|+..|.|+++++.+|.....           
T Consensus      1095 ------------------------~~frd~~~~fTc~afs~~~~h-L~vG~~~Geik~~nv~sG~~e~s----------- 1138 (1516)
T KOG1832|consen 1095 ------------------------RSFRDETALFTCIAFSGGTNH-LAVGSHAGEIKIFNVSSGSMEES----------- 1138 (1516)
T ss_pred             ------------------------hhhhccccceeeEEeecCCce-EEeeeccceEEEEEccCcccccc-----------
Confidence                                    022237789999999999995 99999999999999999987764           


Q ss_pred             CcccccccccCCCCceeEEEEecCCCeEEEEeCC--CeEEEEEccCCceeeEEEEeeccccCeeEEEecCCCCceEEEEE
Q 001415          408 SMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSR--HIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITC  485 (1082)
Q Consensus       408 ~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d--~~v~iwd~~~~~~~~~~~~~~~h~~~V~~l~fs~dg~~~~l~s~  485 (1082)
                              ...|..+|+.+.=|.||..+.+.+.-  -...+|++.+--  ....++.    .-.++.|+..-+.  -+.|
T Consensus      1139 --------~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~~~s~~--~~~Hsf~----ed~~vkFsn~~q~--r~~g 1202 (1516)
T KOG1832|consen 1139 --------VNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWDASSTG--GPRHSFD----EDKAVKFSNSLQF--RALG 1202 (1516)
T ss_pred             --------ccccccccccccccCCcceeeeeccccCchHHHhcccccc--Ccccccc----ccceeehhhhHHH--HHhc
Confidence                    78999999999999999988876543  357899987622  2212332    3458899877653  3334


Q ss_pred             eCCCcEEEEEccCCceeEE-eec---CCcCeEEEeeeecCCceEEEEecCCCcEEEEecCCCCceeeecCCCCceEEEEE
Q 001415          486 GDDKTIKVWDATNGAKQYI-FEG---HEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAY  561 (1082)
Q Consensus       486 s~d~~i~vwd~~~~~~~~~-~~~---h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~  561 (1082)
                      .......+||++++..+.+ +.+   ..-.-+...|+|..  .+++-   ||  .+||++....+..+.....       
T Consensus      1203 t~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D--~LIln---dG--vLWDvR~~~aIh~FD~ft~------- 1268 (1516)
T KOG1832|consen 1203 TEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCD--TLILN---DG--VLWDVRIPEAIHRFDQFTD------- 1268 (1516)
T ss_pred             ccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCc--ceEee---Cc--eeeeeccHHHHhhhhhhee-------
Confidence            4445788999999988766 322   11122445565544  34443   33  6899987655544332110       


Q ss_pred             ccCCCeeeecccccceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEEecCCCCCCcCeEEEcCCCCEEEE
Q 001415          562 SADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAV  635 (1082)
Q Consensus       562 s~d~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~  635 (1082)
                      .               ..-.|+|.|..++.-++     |||++|.+++.....-..    +.+.|+..|..++.
T Consensus      1269 ~---------------~~G~FHP~g~eVIINSE-----IwD~RTF~lLh~VP~Ldq----c~VtFNstG~VmYa 1318 (1516)
T KOG1832|consen 1269 Y---------------GGGGFHPSGNEVIINSE-----IWDMRTFKLLHSVPSLDQ----CAVTFNSTGDVMYA 1318 (1516)
T ss_pred             c---------------ccccccCCCceEEeech-----hhhhHHHHHHhcCccccc----eEEEeccCccchhh
Confidence            0               01236777777777664     999999998877654432    56888888876654

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.46  E-value=8e-12  Score=141.48  Aligned_cols=222  Identities=15%  Similarity=0.134  Sum_probs=133.5

Q ss_pred             eecCCCCCceEEEEecCCCeEEEEEcCC--CcEEEEEccccceeeeeceeeeccCCCCcccccccccCCCCceeEEEEec
Q 001415          353 RTLNQGSSPMSMDFHPVQQTLLLVGTNV--GDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP  430 (1082)
Q Consensus       353 ~~~~h~~~v~~~~~spdg~~llasgs~d--g~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~sp  430 (1082)
                      .+..+...+.+.+|||||++|+++...+  ..|.+||+.+++...                    +....+.+.+.+|||
T Consensus       190 ~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~--------------------l~~~~g~~~~~~~SP  249 (427)
T PRK02889        190 SALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV--------------------VANFKGSNSAPAWSP  249 (427)
T ss_pred             EeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE--------------------eecCCCCccceEECC
Confidence            4556888999999999999755444333  359999999886543                    222334567899999


Q ss_pred             CCCeEEE-EeCCCeEEEEEc--cCCceeeEEEEeeccccCeeEEEecCCCCceEEEEEeCCCcEEEEEcc--CCceeEEe
Q 001415          431 DGSLFGV-AYSRHIVQIYSY--HGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDAT--NGAKQYIF  505 (1082)
Q Consensus       431 dg~~las-~~~d~~v~iwd~--~~~~~~~~~~~~~~h~~~V~~l~fs~dg~~~~l~s~s~d~~i~vwd~~--~~~~~~~~  505 (1082)
                      ||+.||. .+.++...||.+  .++. ..   .+..|.+.+....|+|||+. +++++..++...+|.+.  ++.. ..+
T Consensus       250 DG~~la~~~~~~g~~~Iy~~d~~~~~-~~---~lt~~~~~~~~~~wSpDG~~-l~f~s~~~g~~~Iy~~~~~~g~~-~~l  323 (427)
T PRK02889        250 DGRTLAVALSRDGNSQIYTVNADGSG-LR---RLTQSSGIDTEPFFSPDGRS-IYFTSDRGGAPQIYRMPASGGAA-QRV  323 (427)
T ss_pred             CCCEEEEEEccCCCceEEEEECCCCC-cE---ECCCCCCCCcCeEEcCCCCE-EEEEecCCCCcEEEEEECCCCce-EEE
Confidence            9999885 566777666654  4443 32   35556666778899999995 23344445667777654  4443 333


Q ss_pred             ecCCcCeEEEeeeecCCceEEEEecCCC---cEEEEecCCCCceeeecCCCCceEEEEEccCCCeeeecccccceeEEEe
Q 001415          506 EGHEAPVYSVCPHHKENIQFIFSTALDG---KIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQF  582 (1082)
Q Consensus       506 ~~h~~~v~~~~~~~~~~~~~l~s~~~dg---~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~i~~~~~  582 (1082)
                      ..+........|++  +|++|+..+.++   .|.+||+.++..... .. ........|+|||+                
T Consensus       324 t~~g~~~~~~~~Sp--DG~~Ia~~s~~~g~~~I~v~d~~~g~~~~l-t~-~~~~~~p~~spdg~----------------  383 (427)
T PRK02889        324 TFTGSYNTSPRISP--DGKLLAYISRVGGAFKLYVQDLATGQVTAL-TD-TTRDESPSFAPNGR----------------  383 (427)
T ss_pred             ecCCCCcCceEECC--CCCEEEEEEccCCcEEEEEEECCCCCeEEc-cC-CCCccCceECCCCC----------------
Confidence            22223333456655  556777666544   599999877553322 11 11223445555554                


Q ss_pred             cCCCCEEEEEeCCC---eEEEEECCCcceEEEEecCCCCCCcCeEEEcC
Q 001415          583 DTTKNRFLAAGDDF---SIKFWDMDSVQLLTSIDADGGLPASPRIRFNK  628 (1082)
Q Consensus       583 ~~~~~~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~  628 (1082)
                           .++.++.++   .+.+.+. ++.....+..+.+  .+...+|+|
T Consensus       384 -----~l~~~~~~~g~~~l~~~~~-~g~~~~~l~~~~g--~~~~p~wsp  424 (427)
T PRK02889        384 -----YILYATQQGGRSVLAAVSS-DGRIKQRLSVQGG--DVREPSWGP  424 (427)
T ss_pred             -----EEEEEEecCCCEEEEEEEC-CCCceEEeecCCC--CCCCCccCC
Confidence                 555544322   3555565 3555554543322  456677776

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=99.46  E-value=1.7e-10  Score=122.01  Aligned_cols=349  Identities=15%  Similarity=0.223  Sum_probs=214.2

Q ss_pred             CCeEEEEECCCcce-EEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEecCCccceeecccccccccccccccCC
Q 001415          595 DFSIKFWDMDSVQL-LTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKN  673 (1082)
Q Consensus       595 dg~i~iwd~~~~~~-~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  673 (1082)
                      .-.+.+|+...... ...+.......++...+++++|++++.+. +..++|++..++...+..                 
T Consensus        10 Se~~~l~~~~~~~~~~~~f~~~~~~~~~~v~~~S~~G~lfA~~~-~~~v~i~~~~~~~~~lt~-----------------   71 (566)
T KOG2315|consen   10 SEGFYLFNGPGSKDAVTVFEQNKTSRPCNVFAYSNNGRLFAYSD-NQVVKVFEIATLKVVLCV-----------------   71 (566)
T ss_pred             cceeEEeccCCccccccccccCCCCCcceeEEEcCCCcEEEEEc-CCeEEEEEccCCcEEEEe-----------------
Confidence            34577887655332 23332221222456788999998877654 577888887665211110                 


Q ss_pred             CCccccCCCCceeeeccCCceeEEEecccCCCCccccccccCcccccceeEEEEccCCceeeecccCCeEEEeecccccc
Q 001415          674 GDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTER  753 (1082)
Q Consensus       674 ~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~  753 (1082)
                                                                  ....+..+.|+|.|.++.+--.-.   +|       
T Consensus        72 --------------------------------------------~~~~~~~L~fSP~g~yL~T~e~~~---i~-------   97 (566)
T KOG2315|consen   72 --------------------------------------------ELKKTYDLLFSPKGNYLLTWEPWA---IY-------   97 (566)
T ss_pred             --------------------------------------------ccceeeeeeecccccccccccccc---cc-------
Confidence                                                        111455566777666554321100   00       


Q ss_pred             CCCCCcccccCccccCCCCcceeecccCCCCCCCCccEEEeecCCCeEEEeeCCeEEEEecCCCeeEEEECCCCCCeeEE
Q 001415          754 NSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFL  833 (1082)
Q Consensus       754 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~l~~~sdg~i~iwd~~~~~~~~~~~~~~~~v~~l  833 (1082)
                        .........+++|+.+++.........  .... .+..|+.|..+.|--..+.+.+|++.+.+.+..- -|...++.+
T Consensus        98 --~~~~~~~pn~~v~~vet~~~~s~~q~k--~Q~~-W~~qfs~dEsl~arlv~nev~f~~~~~f~~~~~k-l~~~~i~~f  171 (566)
T KOG2315|consen   98 --GPKNASNPNVLVYNVETGVQRSQIQKK--MQNG-WVPQFSIDESLAARLVSNEVQFYDLGSFKTIQHK-LSVSGITML  171 (566)
T ss_pred             --cCCCCCCCceeeeeeccceehhheehh--hhcC-cccccccchhhhhhhhcceEEEEecCCccceeee-eeccceeeE
Confidence              000011234566677664433221111  1222 5889999998887777889999999875443322 256789999


Q ss_pred             EEecCCC--cEEEE-----EeCCCcEEEEecccceeeeeec---ccccCEEEEEEeCCCCE---EEEEeCC---------
Q 001415          834 AFHPQDN--NIIAI-----GMDDSSIQIYNVRVDEVKSKLK---GHSKRITGLAFSHALNV---LVSSGAD---------  891 (1082)
Q Consensus       834 ~~sp~~~--~~las-----g~~dg~v~iwd~~~~~~~~~l~---~h~~~V~~l~~s~d~~~---l~s~s~D---------  891 (1082)
                      .+|| ++  ..+|+     ++.-+.|+||.+.-...-..+.   -....=..+.|.+-|.-   |++..-|         
T Consensus       172 ~lSp-gp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGE  250 (566)
T KOG2315|consen  172 SLSP-GPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGE  250 (566)
T ss_pred             EecC-CCCCceEEEEccCCCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCcccccc
Confidence            9999 52  34443     4455689999876322111110   01112234677776653   2333333         


Q ss_pred             CcEEEEEcCCcccccceeeeccCCCCCCCCCCcEEEEcCCCcEEEEE---ecCeEEEEEccCcceeeeeccCCCCcceeE
Q 001415          892 SQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV---HETQLAIFETTKLECVKQWVPRESSAPITH  968 (1082)
Q Consensus       892 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~---~d~~i~iwd~~~~~~~~~~~~~~h~~~i~~  968 (1082)
                      .++.+.++++..    ..+.....     ++|.++.|+|+|+.++++   .--.+.|||++ +..+..+.    .++-++
T Consensus       251 q~Lyll~t~g~s----~~V~L~k~-----GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr-~~~v~df~----egpRN~  316 (566)
T KOG2315|consen  251 QTLYLLATQGES----VSVPLLKE-----GPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR-GKPVFDFP----EGPRNT  316 (566)
T ss_pred             ceEEEEEecCce----EEEecCCC-----CCceEEEECCCCCEEEEEEecccceEEEEcCC-CCEeEeCC----CCCccc
Confidence            367788877321    22222211     678999999999988884   34689999984 55555554    567889


Q ss_pred             EEEcCCCceEEEeecC---CcEEEEecCCceeeeeeCCCeecCCCCCCCCceeeEEEEeCCCCCeEEEEec------CCc
Q 001415          969 ATFSCDSQLVYACFLD---ATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLS------DGG 1039 (1082)
Q Consensus       969 l~~s~dg~~l~t~s~d---g~v~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~~~~~~~d~~~l~s~~~------dg~ 1039 (1082)
                      +-|+|.|.+|+.++.+   |.+.|||+.+.+++..+.       .     ...+-+.|+| ||++++|+..      |+.
T Consensus       317 ~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~-------a-----~~tt~~eW~P-dGe~flTATTaPRlrvdNg  383 (566)
T KOG2315|consen  317 AFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFK-------A-----ANTTVFEWSP-DGEYFLTATTAPRLRVDNG  383 (566)
T ss_pred             eEECCCCCEEEEeecCCCCCceEEEeccchhhccccc-------c-----CCceEEEEcC-CCcEEEEEeccccEEecCC
Confidence            9999999999988754   789999999999998776       1     2234699999 6999888764      588


Q ss_pred             EEEEccCCCC
Q 001415         1040 VHVFEPLESE 1049 (1082)
Q Consensus      1040 v~vW~~~~~~ 1049 (1082)
                      ++||++.-.-
T Consensus       384 ~KiwhytG~~  393 (566)
T KOG2315|consen  384 IKIWHYTGSL  393 (566)
T ss_pred             eEEEEecCce
Confidence            9999986543

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.46  E-value=4.3e-13  Score=137.34  Aligned_cols=232  Identities=15%  Similarity=0.236  Sum_probs=186.4

Q ss_pred             CCCceEEEEecCCCeEEEEEcCCCcEEEEEccccceeeeeceeeeccCCCCcccccccccCCCCceeEEEEecCCCeEEE
Q 001415          358 GSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGV  437 (1082)
Q Consensus       358 ~~~v~~~~~spdg~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las  437 (1082)
                      .-....+.|+.+|++ ++.|+..|.|..+|+.++.+.....                    -...|.++.|-.+.+++|+
T Consensus       129 eFGPY~~~ytrnGrh-lllgGrKGHlAa~Dw~t~~L~~Ei~--------------------v~Etv~Dv~~LHneq~~AV  187 (545)
T KOG1272|consen  129 EFGPYHLDYTRNGRH-LLLGGRKGHLAAFDWVTKKLHFEIN--------------------VMETVRDVTFLHNEQFFAV  187 (545)
T ss_pred             ccCCeeeeecCCccE-EEecCCccceeeeecccceeeeeee--------------------hhhhhhhhhhhcchHHHHh
Confidence            345678999999997 7778889999999999998876432                    2347889999999999999


Q ss_pred             EeCCCeEEEEEccCCceeeEEEEeeccccCeeEEEecCCCCceEEEEEeCCCcEEEEEccCCceeEEeecCCcCeEEEee
Q 001415          438 AYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCP  517 (1082)
Q Consensus       438 ~~~d~~v~iwd~~~~~~~~~~~~~~~h~~~V~~l~fs~dg~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~  517 (1082)
                      +- ...+.|||-..-+ +.+   +..| ..|..+.|-|.--  +|++++..|.++.-|+.+|+.+..+....+.+..++-
T Consensus       188 AQ-K~y~yvYD~~GtE-lHC---lk~~-~~v~rLeFLPyHf--LL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~q  259 (545)
T KOG1272|consen  188 AQ-KKYVYVYDNNGTE-LHC---LKRH-IRVARLEFLPYHF--LLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQ  259 (545)
T ss_pred             hh-hceEEEecCCCcE-Eee---hhhc-Cchhhhcccchhh--eeeecccCCceEEEeechhhhhHHHHccCCccchhhc
Confidence            84 4679999976543 442   3333 4789999999876  8999999999999999999999999888888888886


Q ss_pred             eecCCceEEEEecCCCcEEEEecCCCCceeeecCCCCceEEEEEccCCCeeeecccccceeEEEecCCCCEEEEEeCCCe
Q 001415          518 HHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFS  597 (1082)
Q Consensus       518 ~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~  597 (1082)
                      +|-+  ..+-+|...|+|.+|.....+++..+..|.++|.++++.++|.                     ++++.|.|..
T Consensus       260 NP~N--aVih~GhsnGtVSlWSP~skePLvKiLcH~g~V~siAv~~~G~---------------------YMaTtG~Dr~  316 (545)
T KOG1272|consen  260 NPYN--AVIHLGHSNGTVSLWSPNSKEPLVKILCHRGPVSSIAVDRGGR---------------------YMATTGLDRK  316 (545)
T ss_pred             CCcc--ceEEEcCCCceEEecCCCCcchHHHHHhcCCCcceEEECCCCc---------------------EEeecccccc
Confidence            6544  6888999999999999998888888888888888877777766                     9999999999


Q ss_pred             EEEEECCCcceEEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEE
Q 001415          598 IKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILA  646 (1082)
Q Consensus       598 i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~iwd  646 (1082)
                      ++|||++....+.++....   +...+++|..|-  ++.+....+.||.
T Consensus       317 ~kIWDlR~~~ql~t~~tp~---~a~~ls~Sqkgl--LA~~~G~~v~iw~  360 (545)
T KOG1272|consen  317 VKIWDLRNFYQLHTYRTPH---PASNLSLSQKGL--LALSYGDHVQIWK  360 (545)
T ss_pred             eeEeeeccccccceeecCC---Cccccccccccc--eeeecCCeeeeeh
Confidence            9999999887776665422   467788887663  3344556788995

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.45  E-value=2.9e-10  Score=111.68  Aligned_cols=237  Identities=15%  Similarity=0.211  Sum_probs=157.8

Q ss_pred             ceEEEEecCCCeEEEEEcCCCcEEEEEccccceeeeeceeeeccCCCCcccccccccCCCCceeEEEEecCCCeEEEE-e
Q 001415          361 PMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVA-Y  439 (1082)
Q Consensus       361 v~~~~~spdg~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~-~  439 (1082)
                      ...++|..|..- +++| .|.-.+||+.+.-+...++.+                 ..-.-.+..+-|  -.++||.. +
T Consensus         8 ~lsvs~NQD~Sc-Fava-~~~Gfriyn~~P~ke~~~r~~-----------------~~~G~~~veMLf--R~N~laLVGG   66 (346)
T KOG2111|consen    8 TLSVSFNQDHSC-FAVA-TDTGFRIYNCDPFKESASRQF-----------------IDGGFKIVEMLF--RSNYLALVGG   66 (346)
T ss_pred             eeEEEEccCCce-EEEE-ecCceEEEecCchhhhhhhcc-----------------ccCchhhhhHhh--hhceEEEecC
Confidence            344899999884 5555 466688999876333221110                 000011111212  23455543 3


Q ss_pred             CC------CeEEEEEccCCceeeEEEEeeccccCeeEEEecCCCCceEEEEEeCCCcEEEEEcc-CCceeEEeecCC--c
Q 001415          440 SR------HIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDAT-NGAKQYIFEGHE--A  510 (1082)
Q Consensus       440 ~d------~~v~iwd~~~~~~~~~~~~~~~h~~~V~~l~fs~dg~~~~l~s~s~d~~i~vwd~~-~~~~~~~~~~h~--~  510 (1082)
                      .+      ..|.|||-...+++.   ++. -..+|.++.++++-    +|.. ..+.|.||... +.+.++.+....  .
T Consensus        67 g~~pky~pNkviIWDD~k~~~i~---el~-f~~~I~~V~l~r~r----iVvv-l~~~I~VytF~~n~k~l~~~et~~NPk  137 (346)
T KOG2111|consen   67 GSRPKYPPNKVIIWDDLKERCII---ELS-FNSEIKAVKLRRDR----IVVV-LENKIYVYTFPDNPKLLHVIETRSNPK  137 (346)
T ss_pred             CCCCCCCCceEEEEecccCcEEE---EEE-eccceeeEEEcCCe----EEEE-ecCeEEEEEcCCChhheeeeecccCCC
Confidence            22      479999955555444   332 45789999998763    3333 35789999987 566666665433  2


Q ss_pred             CeEEEeeeecCCceEEEEec-CCCcEEEEecCCCCc--eeeecCCCCceEEEEEccCCCeeeecccccceeEEEecCCCC
Q 001415          511 PVYSVCPHHKENIQFIFSTA-LDGKIKAWLYDNLGS--RVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKN  587 (1082)
Q Consensus       511 ~v~~~~~~~~~~~~~l~s~~-~dg~i~iwd~~~~~~--~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~i~~~~~~~~~~  587 (1082)
                      ...+++  +..+..+|+.-+ .-|.|++-|+.....  ...+..|...|.+++.+.+|.                     
T Consensus       138 GlC~~~--~~~~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt---------------------  194 (346)
T KOG2111|consen  138 GLCSLC--PTSNKSLLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGT---------------------  194 (346)
T ss_pred             ceEeec--CCCCceEEEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCcc---------------------
Confidence            344443  444445566554 358899999876554  355566666666555555554                     


Q ss_pred             EEEEEeCCCe-EEEEECCCcceEEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEecCC
Q 001415          588 RFLAAGDDFS-IKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG  650 (1082)
Q Consensus       588 ~l~~~~~dg~-i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~iwd~~~~  650 (1082)
                      .+++++..|+ |||||..+|+.+..+........|.+++|||++.+|+++++.|++.|+.+...
T Consensus       195 ~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~~  258 (346)
T KOG2111|consen  195 LVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSSWLAVSSDKGTLHIFSLRDT  258 (346)
T ss_pred             EEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCccEEEEEcCCCeEEEEEeecC
Confidence            8999999887 79999999999999987766678999999999999999999999999998764

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.45  E-value=4.2e-11  Score=135.40  Aligned_cols=213  Identities=12%  Similarity=0.125  Sum_probs=133.7

Q ss_pred             cEEEEEccccceeeeeceeeeccCCCCcccccccccCCCCceeEEEEecCCCeEEEEeC---CCeEEEEEccCCceeeEE
Q 001415          382 DIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYS---RHIVQIYSYHGGDEVRQH  458 (1082)
Q Consensus       382 ~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~---d~~v~iwd~~~~~~~~~~  458 (1082)
                      .|.+||...+....                    +..+...+.+.+|||||+.||..+.   +..|.+|++.+++...  
T Consensus       180 ~l~~~d~dg~~~~~--------------------lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~--  237 (429)
T PRK03629        180 ELRVSDYDGYNQFV--------------------VHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ--  237 (429)
T ss_pred             eEEEEcCCCCCCEE--------------------eecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEE--
Confidence            68888887654332                    3456678999999999999997653   3579999998876432  


Q ss_pred             EEeeccccCeeEEEecCCCCceEEEEEeCCC--cEEEEEccCCceeEEeecCCcCeEEEeeeecCCceEEEEecC-CCcE
Q 001415          459 LEIDAHVGGVNDIAFSHPNKQLCVITCGDDK--TIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTAL-DGKI  535 (1082)
Q Consensus       459 ~~~~~h~~~V~~l~fs~dg~~~~l~s~s~d~--~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~-dg~i  535 (1082)
                        +....+.+..++|||||+. ++++.+.++  .|.+||+.+++... +..+...+....|+|+  |+.|+..+. ++..
T Consensus       238 --l~~~~~~~~~~~~SPDG~~-La~~~~~~g~~~I~~~d~~tg~~~~-lt~~~~~~~~~~wSPD--G~~I~f~s~~~g~~  311 (429)
T PRK03629        238 --VASFPRHNGAPAFSPDGSK-LAFALSKTGSLNLYVMDLASGQIRQ-VTDGRSNNTEPTWFPD--SQNLAYTSDQAGRP  311 (429)
T ss_pred             --ccCCCCCcCCeEECCCCCE-EEEEEcCCCCcEEEEEECCCCCEEE-ccCCCCCcCceEECCC--CCEEEEEeCCCCCc
Confidence              2223334557899999995 333444454  48999998887654 4434456677787765  466666554 4555


Q ss_pred             EEE--ecCCCCceeeecCCCCceEEEEEccCCCeeeecccccceeEEEecCCCCEEEEEeC---CCeEEEEECCCcceEE
Q 001415          536 KAW--LYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGD---DFSIKFWDMDSVQLLT  610 (1082)
Q Consensus       536 ~iw--d~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~---dg~i~iwd~~~~~~~~  610 (1082)
                      .+|  |+.++.. ..+.........                     ..|+|+|++++..+.   ...|.+||+.+++.. 
T Consensus       312 ~Iy~~d~~~g~~-~~lt~~~~~~~~---------------------~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~-  368 (429)
T PRK03629        312 QVYKVNINGGAP-QRITWEGSQNQD---------------------ADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-  368 (429)
T ss_pred             eEEEEECCCCCe-EEeecCCCCccC---------------------EEECCCCCEEEEEEccCCCceEEEEECCCCCeE-
Confidence            555  4443322 122222222233                     344555556665443   246889999888654 


Q ss_pred             EEecCCCCCCcCeEEEcCCCCEEEEEECCCc---EEEEEec
Q 001415          611 SIDADGGLPASPRIRFNKDGCLLAVSTNDNG---IKILATS  648 (1082)
Q Consensus       611 ~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~---i~iwd~~  648 (1082)
                      .+....   ......|+|||++|+..+.++.   +.++++.
T Consensus       369 ~Lt~~~---~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~  406 (429)
T PRK03629        369 VLTDTF---LDETPSIAPNGTMVIYSSSQGMGSVLNLVSTD  406 (429)
T ss_pred             EeCCCC---CCCCceECCCCCEEEEEEcCCCceEEEEEECC
Confidence            333221   2346889999999999988765   5556653

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.45  E-value=1.2e-11  Score=140.70  Aligned_cols=221  Identities=13%  Similarity=0.116  Sum_probs=136.3

Q ss_pred             eecCCCCCceEEEEecCCCeEEEEEcC--CCcEEEEEccccceeeeeceeeeccCCCCcccccccccCCCCceeEEEEec
Q 001415          353 RTLNQGSSPMSMDFHPVQQTLLLVGTN--VGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP  430 (1082)
Q Consensus       353 ~~~~h~~~v~~~~~spdg~~llasgs~--dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~sp  430 (1082)
                      .+..|...+.+.+|||||++++.+...  +..|.+||+.+++...                    +..+.+...+++|||
T Consensus       198 ~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~--------------------l~~~~g~~~~~~~Sp  257 (433)
T PRK04922        198 TILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL--------------------VASFRGINGAPSFSP  257 (433)
T ss_pred             EeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE--------------------eccCCCCccCceECC
Confidence            455678889999999999974444332  3469999998876543                    223344556789999


Q ss_pred             CCCeEEEE-eCCC--eEEEEEccCCceeeEEEEeeccccCeeEEEecCCCCceEEEEEe-CCCc--EEEEEccCCceeEE
Q 001415          431 DGSLFGVA-YSRH--IVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCG-DDKT--IKVWDATNGAKQYI  504 (1082)
Q Consensus       431 dg~~las~-~~d~--~v~iwd~~~~~~~~~~~~~~~h~~~V~~l~fs~dg~~~~l~s~s-~d~~--i~vwd~~~~~~~~~  504 (1082)
                      ||+.|+.. +.+|  .|.+||+.+++..    .+..|.......+|+|||+.  ++.++ .++.  |.++|+.+++... 
T Consensus       258 DG~~l~~~~s~~g~~~Iy~~d~~~g~~~----~lt~~~~~~~~~~~spDG~~--l~f~sd~~g~~~iy~~dl~~g~~~~-  330 (433)
T PRK04922        258 DGRRLALTLSRDGNPEIYVMDLGSRQLT----RLTNHFGIDTEPTWAPDGKS--IYFTSDRGGRPQIYRVAASGGSAER-  330 (433)
T ss_pred             CCCEEEEEEeCCCCceEEEEECCCCCeE----ECccCCCCccceEECCCCCE--EEEEECCCCCceEEEEECCCCCeEE-
Confidence            99988754 4455  5999999887643    35556556678999999994  55444 4555  6666766665433 


Q ss_pred             eecCCcCeEEEeeeecCCceEEEEecCCC---cEEEEecCCCCceeeecCCCCceEEEEEccCCCeeeecccccceeEEE
Q 001415          505 FEGHEAPVYSVCPHHKENIQFIFSTALDG---KIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQ  581 (1082)
Q Consensus       505 ~~~h~~~v~~~~~~~~~~~~~l~s~~~dg---~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~i~~~~  581 (1082)
                      +..+.......+|+++  |++|+..+.++   .|.+||+.++... .+. +........|+|||+               
T Consensus       331 lt~~g~~~~~~~~SpD--G~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt-~~~~~~~p~~spdG~---------------  391 (433)
T PRK04922        331 LTFQGNYNARASVSPD--GKKIAMVHGSGGQYRIAVMDLSTGSVR-TLT-PGSLDESPSFAPNGS---------------  391 (433)
T ss_pred             eecCCCCccCEEECCC--CCEEEEEECCCCceeEEEEECCCCCeE-ECC-CCCCCCCceECCCCC---------------
Confidence            3323334445677654  46676654332   5889998765443 222 111223345555554               


Q ss_pred             ecCCCCEEEEEeC---CCeEEEEECCCcceEEEEecCCCCCCcCeEEEcC
Q 001415          582 FDTTKNRFLAAGD---DFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNK  628 (1082)
Q Consensus       582 ~~~~~~~l~~~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~  628 (1082)
                            .++..+.   .+.|.++++.. .....+..+.+  .+...+|+|
T Consensus       392 ------~i~~~s~~~g~~~L~~~~~~g-~~~~~l~~~~g--~~~~p~wsp  432 (433)
T PRK04922        392 ------MVLYATREGGRGVLAAVSTDG-RVRQRLVSADG--EVREPAWSP  432 (433)
T ss_pred             ------EEEEEEecCCceEEEEEECCC-CceEEcccCCC--CCCCCccCC
Confidence                  5555443   34678888754 34444433222  356667765

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=99.44  E-value=3.7e-10  Score=119.52  Aligned_cols=313  Identities=9%  Similarity=0.170  Sum_probs=193.8

Q ss_pred             EEEEeCCCeEEEEECCCcceEEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEecCCccceeecccccccccccc
Q 001415          589 FLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTS  668 (1082)
Q Consensus       589 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~  668 (1082)
                      +++.+.+..++|++..++..+.+....    .+..+.|+|-|.+|.+--   .-.++...+..                 
T Consensus        48 lfA~~~~~~v~i~~~~~~~~~lt~~~~----~~~~L~fSP~g~yL~T~e---~~~i~~~~~~~-----------------  103 (566)
T KOG2315|consen   48 LFAYSDNQVVKVFEIATLKVVLCVELK----KTYDLLFSPKGNYLLTWE---PWAIYGPKNAS-----------------  103 (566)
T ss_pred             EEEEEcCCeEEEEEccCCcEEEEeccc----eeeeeeeccccccccccc---ccccccCCCCC-----------------
Confidence            555566778999999888655444433    368899999998886521   11111111110                 


Q ss_pred             cccCCCCccccCCCCceeeeccCCceeEEEecccCCCCccccccccCcccccceeEEEEccCCceeeecccCCeEEEeec
Q 001415          669 ENSKNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKW  748 (1082)
Q Consensus       669 ~~~~~~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iw~~  748 (1082)
                                            .-.+.+|++.+......+..     ....+  ....|+.|.. +++--..+.+.+|+.
T Consensus       104 ----------------------~pn~~v~~vet~~~~s~~q~-----k~Q~~--W~~qfs~dEs-l~arlv~nev~f~~~  153 (566)
T KOG2315|consen  104 ----------------------NPNVLVYNVETGVQRSQIQK-----KMQNG--WVPQFSIDES-LAARLVSNEVQFYDL  153 (566)
T ss_pred             ----------------------CCceeeeeeccceehhheeh-----hhhcC--cccccccchh-hhhhhhcceEEEEec
Confidence                                  12445566554211111111     00112  4677887775 333334556777765


Q ss_pred             cccccCCCCCcccccCccccCCCCcceeecccCCCCCCCCccEEEeecCCC--eEEEe---eC---CeEEEEecCCCeeE
Q 001415          749 QRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDS--YVMSA---SG---GKISLFNMMTFKTM  820 (1082)
Q Consensus       749 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~--~l~~~---sd---g~i~iwd~~~~~~~  820 (1082)
                      ...                      ......+    |...|..+.+||.+.  .+|+-   .+   ..++||...-....
T Consensus       154 ~~f----------------------~~~~~kl----~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~  207 (566)
T KOG2315|consen  154 GSF----------------------KTIQHKL----SVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQH  207 (566)
T ss_pred             CCc----------------------cceeeee----eccceeeEEecCCCCCceEEEEccCCCCCCcEEEEecccccccc
Confidence            431                      0111111    677889999998754  34432   13   45999987622211


Q ss_pred             EEEC---CCCCCeeEEEEecCCCcEEEEEeC-----------CCcEEEEecccceeeeeecccccCEEEEEEeCCCCEEE
Q 001415          821 ATFM---PPPPAATFLAFHPQDNNIIAIGMD-----------DSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLV  886 (1082)
Q Consensus       821 ~~~~---~~~~~v~~l~~sp~~~~~lasg~~-----------dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~  886 (1082)
                      ..+.   -....-..+.|.+.+..+|+.++.           ..++++.++....+...+. -.++|.++.|+|+++-++
T Consensus       208 ~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~-k~GPVhdv~W~~s~~EF~  286 (566)
T KOG2315|consen  208 QPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLL-KEGPVHDVTWSPSGREFA  286 (566)
T ss_pred             chhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEecC-CCCCceEEEECCCCCEEE
Confidence            1111   112233456777744445544442           2368888887445555554 468999999999998765


Q ss_pred             E--EeCCCcEEEEEcCCcccccceeeeccCCCCCCCCCCcEEEEcCCCcEEEE-Ee---cCeEEEEEccCcceeeeeccC
Q 001415          887 S--SGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VH---ETQLAIFETTKLECVKQWVPR  960 (1082)
Q Consensus       887 s--~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~-~~---d~~i~iwd~~~~~~~~~~~~~  960 (1082)
                      .  |-.-..+.|+|++.     ..+....+|.      -..+-|+|.|++++. +.   .|.+.|||+.+.+++..+.. 
T Consensus       287 VvyGfMPAkvtifnlr~-----~~v~df~egp------RN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a-  354 (566)
T KOG2315|consen  287 VVYGFMPAKVTIFNLRG-----KPVFDFPEGP------RNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKA-  354 (566)
T ss_pred             EEEecccceEEEEcCCC-----CEeEeCCCCC------ccceEECCCCCEEEEeecCCCCCceEEEeccchhhcccccc-
Confidence            5  44567899999988     2344555543      378999999999988 43   47899999999999888874 


Q ss_pred             CCCcceeEEEEcCCCceEEEee------cCCcEEEEecCCcee
Q 001415          961 ESSAPITHATFSCDSQLVYACF------LDATVCVFSAANLKL  997 (1082)
Q Consensus       961 ~h~~~i~~l~~s~dg~~l~t~s------~dg~v~vwd~~~~~~  997 (1082)
                         ..-+-..|+|||++++|++      .|+.++||++....+
T Consensus       355 ---~~tt~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG~~l  394 (566)
T KOG2315|consen  355 ---ANTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTGSLL  394 (566)
T ss_pred             ---CCceEEEEcCCCcEEEEEeccccEEecCCeEEEEecCcee
Confidence               3456678999999999887      478999999875443

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.44  E-value=2.2e-11  Score=138.75  Aligned_cols=220  Identities=12%  Similarity=0.069  Sum_probs=138.4

Q ss_pred             eecCCCCCceEEEEecCCCeEEEEEc--CCCcEEEEEccccceeeeeceeeeccCCCCcccccccccCCCCceeEEEEec
Q 001415          353 RTLNQGSSPMSMDFHPVQQTLLLVGT--NVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP  430 (1082)
Q Consensus       353 ~~~~h~~~v~~~~~spdg~~llasgs--~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~sp  430 (1082)
                      .+..|...+.+.+|||||++|+.+..  .+..|.+||+.+++...                    +..+.+.+.+.+|||
T Consensus       196 ~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~--------------------l~~~~g~~~~~~~SP  255 (435)
T PRK05137        196 YLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQREL--------------------VGNFPGMTFAPRFSP  255 (435)
T ss_pred             EEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEE--------------------eecCCCcccCcEECC
Confidence            45568889999999999997555433  24679999998886543                    344566788899999


Q ss_pred             CCCeEEEE-eCCCe--EEEEEccCCceeeEEEEeeccccCeeEEEecCCCCceEEEEEe-CCC--cEEEEEccCCceeEE
Q 001415          431 DGSLFGVA-YSRHI--VQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCG-DDK--TIKVWDATNGAKQYI  504 (1082)
Q Consensus       431 dg~~las~-~~d~~--v~iwd~~~~~~~~~~~~~~~h~~~V~~l~fs~dg~~~~l~s~s-~d~--~i~vwd~~~~~~~~~  504 (1082)
                      ||+.|+.. +.++.  |.+||+.++...    .+..+.+......|+|||+.  ++..+ .++  .|.+||+.++.. +.
T Consensus       256 DG~~la~~~~~~g~~~Iy~~d~~~~~~~----~Lt~~~~~~~~~~~spDG~~--i~f~s~~~g~~~Iy~~d~~g~~~-~~  328 (435)
T PRK05137        256 DGRKVVMSLSQGGNTDIYTMDLRSGTTT----RLTDSPAIDTSPSYSPDGSQ--IVFESDRSGSPQLYVMNADGSNP-RR  328 (435)
T ss_pred             CCCEEEEEEecCCCceEEEEECCCCceE----EccCCCCccCceeEcCCCCE--EEEEECCCCCCeEEEEECCCCCe-EE
Confidence            99988754 44554  777788887643    35566667788999999995  44444 333  588888766554 44


Q ss_pred             eecCCcCeEEEeeeecCCceEEEEecCC---CcEEEEecCCCCceeeecCCCCceEEEEEccCCCeeeecccccceeEEE
Q 001415          505 FEGHEAPVYSVCPHHKENIQFIFSTALD---GKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQ  581 (1082)
Q Consensus       505 ~~~h~~~v~~~~~~~~~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~i~~~~  581 (1082)
                      +..+.+.+....|+|+  |+.|+..+.+   ..|.+||+...... .+.. ...+....|+|||+               
T Consensus       329 lt~~~~~~~~~~~Spd--G~~ia~~~~~~~~~~i~~~d~~~~~~~-~lt~-~~~~~~p~~spDG~---------------  389 (435)
T PRK05137        329 ISFGGGRYSTPVWSPR--GDLIAFTKQGGGQFSIGVMKPDGSGER-ILTS-GFLVEGPTWAPNGR---------------  389 (435)
T ss_pred             eecCCCcccCeEECCC--CCEEEEEEcCCCceEEEEEECCCCceE-eccC-CCCCCCCeECCCCC---------------
Confidence            4434555666677654  4667665443   35777887543322 2211 12234445555554               


Q ss_pred             ecCCCCEEEEEeC-C-----CeEEEEECCCcceEEEEecCCCCCCcCeEEEcC
Q 001415          582 FDTTKNRFLAAGD-D-----FSIKFWDMDSVQLLTSIDADGGLPASPRIRFNK  628 (1082)
Q Consensus       582 ~~~~~~~l~~~~~-d-----g~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~  628 (1082)
                            .++..+. .     ..+.++|+..+.. ..+...+   .+...+|+|
T Consensus       390 ------~i~~~~~~~~~~~~~~L~~~dl~g~~~-~~l~~~~---~~~~p~Wsp  432 (435)
T PRK05137        390 ------VIMFFRQTPGSGGAPKLYTVDLTGRNE-REVPTPG---DASDPAWSP  432 (435)
T ss_pred             ------EEEEEEccCCCCCcceEEEEECCCCce-EEccCCC---CccCcccCC
Confidence                  5544332 1     3678888866544 3343222   245667766

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.43  E-value=5.2e-11  Score=135.69  Aligned_cols=216  Identities=13%  Similarity=0.076  Sum_probs=139.7

Q ss_pred             CcEEEEEccccceeeeeceeeeccCCCCcccccccccCCCCceeEEEEecCCCeEEEEeC---CCeEEEEEccCCceeeE
Q 001415          381 GDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYS---RHIVQIYSYHGGDEVRQ  457 (1082)
Q Consensus       381 g~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~---d~~v~iwd~~~~~~~~~  457 (1082)
                      ..|.+||..+.....                    +..|...+.+.+|||||+.||..+.   +..|.+||+.+++..  
T Consensus       182 ~~l~~~d~dg~~~~~--------------------lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~--  239 (435)
T PRK05137        182 KRLAIMDQDGANVRY--------------------LTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE--  239 (435)
T ss_pred             eEEEEECCCCCCcEE--------------------EecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE--
Confidence            368888876544322                    5577889999999999999998764   468999999988643  


Q ss_pred             EEEeeccccCeeEEEecCCCCceEEEEEeCCCc--EEEEEccCCceeEEeecCCcCeEEEeeeecCCceEEEEec-CCC-
Q 001415          458 HLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKT--IKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTA-LDG-  533 (1082)
Q Consensus       458 ~~~~~~h~~~V~~l~fs~dg~~~~l~s~s~d~~--i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~-~dg-  533 (1082)
                        .+..+.+.+.+.+|+|||+. ++++.+.++.  |.+||+.++.. ..+..+.+......|+++  |+.|+..+ .+| 
T Consensus       240 --~l~~~~g~~~~~~~SPDG~~-la~~~~~~g~~~Iy~~d~~~~~~-~~Lt~~~~~~~~~~~spD--G~~i~f~s~~~g~  313 (435)
T PRK05137        240 --LVGNFPGMTFAPRFSPDGRK-VVMSLSQGGNTDIYTMDLRSGTT-TRLTDSPAIDTSPSYSPD--GSQIVFESDRSGS  313 (435)
T ss_pred             --EeecCCCcccCcEECCCCCE-EEEEEecCCCceEEEEECCCCce-EEccCCCCccCceeEcCC--CCEEEEEECCCCC
Confidence              25556677889999999996 4456666665  77778887765 456656666667777654  46666655 333 


Q ss_pred             -cEEEEecCCCCceeeecCCCCceEEEEEccCCCeeeecccccceeEEEecCCCCEEEEEeC---CCeEEEEECCCcceE
Q 001415          534 -KIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGD---DFSIKFWDMDSVQLL  609 (1082)
Q Consensus       534 -~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~---dg~i~iwd~~~~~~~  609 (1082)
                       .|.+||+...... .+......+....                     |+|+|+.++....   +..|.+||+.++.. 
T Consensus       314 ~~Iy~~d~~g~~~~-~lt~~~~~~~~~~---------------------~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~-  370 (435)
T PRK05137        314 PQLYVMNADGSNPR-RISFGGGRYSTPV---------------------WSPRGDLIAFTKQGGGQFSIGVMKPDGSGE-  370 (435)
T ss_pred             CeEEEEECCCCCeE-EeecCCCcccCeE---------------------ECCCCCEEEEEEcCCCceEEEEEECCCCce-
Confidence             5777776543322 2221222233334                     4455556665443   24688889865543 


Q ss_pred             EEEecCCCCCCcCeEEEcCCCCEEEEEECC------CcEEEEEecCC
Q 001415          610 TSIDADGGLPASPRIRFNKDGCLLAVSTND------NGIKILATSDG  650 (1082)
Q Consensus       610 ~~~~~~~~~~~i~~~~~s~dg~~l~~~~~d------g~i~iwd~~~~  650 (1082)
                      ..+... .  .+....|+|||+.|+..+.+      ..+.++++..+
T Consensus       371 ~~lt~~-~--~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~  414 (435)
T PRK05137        371 RILTSG-F--LVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGR  414 (435)
T ss_pred             EeccCC-C--CCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCC
Confidence            333321 1  36778999999998876543      24666666544

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.43  E-value=1e-09  Score=120.53  Aligned_cols=209  Identities=16%  Similarity=0.198  Sum_probs=131.8

Q ss_pred             ccEEEeecCCCeEEEee--CCeEEEEecCC-CeeEEE---E----------CCCCCCeeEEEEecCCCcEEEEEe-CCCc
Q 001415          789 VPCFALSKNDSYVMSAS--GGKISLFNMMT-FKTMAT---F----------MPPPPAATFLAFHPQDNNIIAIGM-DDSS  851 (1082)
Q Consensus       789 i~~l~~s~dg~~l~~~s--dg~i~iwd~~~-~~~~~~---~----------~~~~~~v~~l~~sp~~~~~lasg~-~dg~  851 (1082)
                      ...++++|++++|+++.  +|.|.++++.. +.....   +          ........++.|+| +++++++.. ....
T Consensus        89 p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~p-dg~~v~v~dlG~D~  167 (345)
T PF10282_consen   89 PCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSP-DGRFVYVPDLGADR  167 (345)
T ss_dssp             EEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-T-TSSEEEEEETTTTE
T ss_pred             cEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECC-CCCEEEEEecCCCE
Confidence            34577778888777775  57788888765 333222   1          11234578999999 777666654 3458


Q ss_pred             EEEEecccce--ee--eeec-ccccCEEEEEEeCCCCEEEEEe-CCCcEEEEEcC--CcccccceeeeccCCCCCCCCCC
Q 001415          852 IQIYNVRVDE--VK--SKLK-GHSKRITGLAFSHALNVLVSSG-ADSQLCVWSSD--GWEKQKNRFLQIPTGRTPTAQSD  923 (1082)
Q Consensus       852 v~iwd~~~~~--~~--~~l~-~h~~~V~~l~~s~d~~~l~s~s-~Dg~i~vwd~~--~~~~~~~~~~~~~~~~~~~~~~v  923 (1082)
                      |++|++....  +.  ..+. .....-..++|+||++++.... .+++|.++++.  .+.....................
T Consensus       168 v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~  247 (345)
T PF10282_consen  168 VYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAP  247 (345)
T ss_dssp             EEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSE
T ss_pred             EEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCc
Confidence            9999997654  21  2222 2334568899999999886665 57789999998  44332222222221111111246


Q ss_pred             cEEEEcCCCcEEEEE--ecCeEEEEEcc--Ccce--eeeeccCCCCcceeEEEEcCCCceEEEee-cCCcEEEEec--CC
Q 001415          924 TRVQFHQDQIHFLVV--HETQLAIFETT--KLEC--VKQWVPRESSAPITHATFSCDSQLVYACF-LDATVCVFSA--AN  994 (1082)
Q Consensus       924 ~~~~fspdg~~l~~~--~d~~i~iwd~~--~~~~--~~~~~~~~h~~~i~~l~~s~dg~~l~t~s-~dg~v~vwd~--~~  994 (1082)
                      ..++++|||++|.++  ..+.|.+|+++  ++..  +..+..  .......++++|||++|++++ .++.|.+|++  .+
T Consensus       248 ~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~--~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~t  325 (345)
T PF10282_consen  248 AEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPT--GGKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDPDT  325 (345)
T ss_dssp             EEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEE--SSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTT
T ss_pred             eeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeC--CCCCccEEEEeCCCCEEEEEecCCCeEEEEEEeCCC
Confidence            789999999999996  45689999983  3333  333332  234589999999999999887 5578999876  57


Q ss_pred             ceeeee
Q 001415          995 LKLRCR 1000 (1082)
Q Consensus       995 ~~~~~~ 1000 (1082)
                      |++...
T Consensus       326 G~l~~~  331 (345)
T PF10282_consen  326 GKLTPV  331 (345)
T ss_dssp             TEEEEE
T ss_pred             CcEEEe
Confidence            776543

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=99.43  E-value=7.2e-10  Score=119.56  Aligned_cols=481  Identities=13%  Similarity=0.112  Sum_probs=262.5

Q ss_pred             CCCCceeEEEEecCCCeEEEEeCCCeEEEEEccCCce------------eeEEEEeeccccCeeEEEecCCCCceEEEEE
Q 001415          418 DPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDE------------VRQHLEIDAHVGGVNDIAFSHPNKQLCVITC  485 (1082)
Q Consensus       418 ~h~~~V~~l~~spdg~~las~~~d~~v~iwd~~~~~~------------~~~~~~~~~h~~~V~~l~fs~dg~~~~l~s~  485 (1082)
                      .......|++|+....|+|+|+.||.+++..+.+...            +..-.++.||.+.|.-+.|..+.+  -|-|.
T Consensus        12 PnnvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~Q--KLTtS   89 (1189)
T KOG2041|consen   12 PNNVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQ--KLTTS   89 (1189)
T ss_pred             CCCceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccc--ccccc
Confidence            3455789999999999999999999999998764321            112236789999999999998888  58888


Q ss_pred             eCCCcEEEEEccCCceeEEee--cCCcCeEEEeeeecCCceEEEEecCCCcEEEEecCCCCceeeecCCCCceEEEEEcc
Q 001415          486 GDDKTIKVWDATNGAKQYIFE--GHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSA  563 (1082)
Q Consensus       486 s~d~~i~vwd~~~~~~~~~~~--~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~  563 (1082)
                      ..+|.|.||-+-.|.-...+.  ...+.|.+++|.  .+|..++....||.|.+=.++.. ...-....+.....     
T Consensus        90 Dt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn--~dG~kIcIvYeDGavIVGsvdGN-RIwgKeLkg~~l~h-----  161 (1189)
T KOG2041|consen   90 DTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWN--LDGTKICIVYEDGAVIVGSVDGN-RIWGKELKGQLLAH-----  161 (1189)
T ss_pred             CCCceEEEEeeecccHHHHHhhCcCccEEEEEEEc--CCCcEEEEEEccCCEEEEeeccc-eecchhcchheccc-----
Confidence            899999999987775443322  244567888875  45578888888888877655421 11111111222223     


Q ss_pred             CCCeeeecccccceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEEecCCCCCCcC-eEEEcCCCCEEEEEECCCcE
Q 001415          564 DGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASP-RIRFNKDGCLLAVSTNDNGI  642 (1082)
Q Consensus       564 d~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~-~~~~s~dg~~l~~~~~dg~i  642 (1082)
                                      +.|++|.+.++.+-.+|.+.+||.... ....+...-   .|+ .-.|+.-+..++.      +
T Consensus       162 ----------------v~ws~D~~~~Lf~~ange~hlydnqgn-F~~Kl~~~c---~Vn~tg~~s~~~~kia~------i  215 (1189)
T KOG2041|consen  162 ----------------VLWSEDLEQALFKKANGETHLYDNQGN-FERKLEKDC---EVNGTGIFSNFPTKIAE------I  215 (1189)
T ss_pred             ----------------eeecccHHHHHhhhcCCcEEEeccccc-HHHhhhhce---EEeeeeeecCCCccccc------e
Confidence                            444555556777777889999986532 111110000   000 0011111111110      0


Q ss_pred             EEEEecCCccceeecccccccccccccccCCCCccccCCCCceeeeccCCceeEEEecccCCCCccccccccCcccccce
Q 001415          643 KILATSDGIRLLRTFENLAYDASRTSENSKNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKI  722 (1082)
Q Consensus       643 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i  722 (1082)
                       -|.  ++         ...              ...|+-..++++..+|.+.+-.-.....+..+.        ..-.+
T Consensus       216 -~w~--~g---------~~~--------------~v~pdrP~lavcy~nGr~QiMR~eND~~Pvv~d--------tgm~~  261 (1189)
T KOG2041|consen  216 -EWN--TG---------PYQ--------------PVPPDRPRLAVCYANGRMQIMRSENDPEPVVVD--------TGMKI  261 (1189)
T ss_pred             -eec--cC---------ccc--------------cCCCCCCEEEEEEcCceehhhhhcCCCCCeEEe--------cccEe
Confidence             010  00         000              002344444555555544443332211111110        22456


Q ss_pred             eEEEEccCCceeeecccCCeEEEeeccccccCCCCCcccccCccccCCCCcceeecccCCCCCCCCccEEEeecCCCeEE
Q 001415          723 SRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVM  802 (1082)
Q Consensus       723 ~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~l~  802 (1082)
                      ....|+++|..+++++.+..-.             ....+..+.++.+-....-....    ....|++++|-..|-.+|
T Consensus       262 vgakWnh~G~vLAvcG~~~da~-------------~~~d~n~v~Fysp~G~i~gtlkv----pg~~It~lsWEg~gLriA  324 (1189)
T KOG2041|consen  262 VGAKWNHNGAVLAVCGNDSDAD-------------EPTDSNKVHFYSPYGHIVGTLKV----PGSCITGLSWEGTGLRIA  324 (1189)
T ss_pred             ecceecCCCcEEEEccCccccc-------------CccccceEEEeccchhheEEEec----CCceeeeeEEcCCceEEE
Confidence            7788889998888887763110             00011122333322221111111    567899999999998999


Q ss_pred             EeeCCeEEEEecCCCeeEEEECCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEecccceeeeeecccccCEEEEEEeCCC
Q 001415          803 SASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHAL  882 (1082)
Q Consensus       803 ~~sdg~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~  882 (1082)
                      .+-|+.|.+=+++..-.-..+.   ..|.- .++..+.       -.-.|.+||..+.+....--   ....+++|+.+-
T Consensus       325 ~AvdsfiyfanIRP~ykWgy~e---~TvVy-~y~~~e~-------p~y~i~Fwdtk~nek~vK~V---~~~~~~a~~~eh  390 (1189)
T KOG2041|consen  325 IAVDSFIYFANIRPEYKWGYIE---ETVVY-VYQKEEL-------PQYGIMFWDTKTNEKTVKTV---THFENMAFYREH  390 (1189)
T ss_pred             EEecceEEEEeecccceEEEee---eEEEE-EEccCCC-------cceEEEEEecccChhhhhhh---cceeehheeccc
Confidence            9999999887776322111111   00110 1111011       01247889988765332221   224578888888


Q ss_pred             CEEEEEeCCCcEEEEEcC-CcccccceeeeccCCCCCC--CCCCcEEEEcCCCcEEEEEecCeEEEEEccCcceeeee--
Q 001415          883 NVLVSSGADSQLCVWSSD-GWEKQKNRFLQIPTGRTPT--AQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQW--  957 (1082)
Q Consensus       883 ~~l~s~s~Dg~i~vwd~~-~~~~~~~~~~~~~~~~~~~--~~~v~~~~fspdg~~l~~~~d~~i~iwd~~~~~~~~~~--  957 (1082)
                      -.|+.-..|+.|.-++.- +........+...-|....  ...|.-.-..-++.++++++...+.+|.....+....+  
T Consensus       391 CvL~~~~d~~~i~e~s~le~~~~~~~l~LCNSIGT~lD~kytdirP~Fv~vn~~~vviAS~e~~~iWhy~~pK~~s~l~~  470 (1189)
T KOG2041|consen  391 CVLINRQDDGVIPEYSTLENRSRVYFLQLCNSIGTSLDYKYTDIRPKFVCVNGICVVIASEERYFIWHYVLPKFNSVLAG  470 (1189)
T ss_pred             EEEEeccccCCCcchhhhhcccceEEEeeecccCCcCCCCcceeeeeEEEecceEEEEeccccEEEEEEeccchhhhhhh
Confidence            888888888887766221 1111001111111111100  01111112223677777778888899986433211110  


Q ss_pred             -----------------------c-----cCCCCcceeEEEEcCCCceEEEeecCCcEEEEecCCceeeeee
Q 001415          958 -----------------------V-----PRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRI 1001 (1082)
Q Consensus       958 -----------------------~-----~~~h~~~i~~l~~s~dg~~l~t~s~dg~v~vwd~~~~~~~~~~ 1001 (1082)
                                             .     ..|..++|-+++.|  .++|..+-..|.|.-|.+.+..+....
T Consensus       471 ~k~rkegr~h~Ddtp~ga~d~~l~ys~kt~~G~~DpICAl~~s--dk~l~vareSG~I~rySl~nv~l~n~y  540 (1189)
T KOG2041|consen  471 VKIRKEGRFHGDDTPEGAQDRTLEYSTKTLLGSKDPICALCIS--DKFLMVARESGGIYRYSLNNVVLTNSY  540 (1189)
T ss_pred             hhhcccccccCCCCccchhhceeeccceeeccCCCcceeeeec--ceEEEEEeccCceEEEEecceeeeecc
Confidence                                   0     11335677777775  478888999999999999988776543

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.43  E-value=3.9e-11  Score=135.91  Aligned_cols=193  Identities=12%  Similarity=0.133  Sum_probs=123.6

Q ss_pred             ccCCCCceeEEEEecCCCeEEEEeCC---CeEEEEEccCCceeeEEEEeeccccCeeEEEecCCCCceEEEEEeCCCcEE
Q 001415          416 VKDPGVSVNRVIWSPDGSLFGVAYSR---HIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIK  492 (1082)
Q Consensus       416 ~~~h~~~V~~l~~spdg~~las~~~d---~~v~iwd~~~~~~~~~~~~~~~h~~~V~~l~fs~dg~~~~l~s~s~d~~i~  492 (1082)
                      +..+...+.+.+|||||+.||..+.+   ..|.+||+.+++...    +....+.+.+.+|+|||+. ++++.+.++...
T Consensus       191 l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~----l~~~~g~~~~~~~SPDG~~-la~~~~~~g~~~  265 (427)
T PRK02889        191 ALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV----VANFKGSNSAPAWSPDGRT-LAVALSRDGNSQ  265 (427)
T ss_pred             eccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE----eecCCCCccceEECCCCCE-EEEEEccCCCce
Confidence            44567789999999999999987643   459999999886543    3334456678999999995 445677788877


Q ss_pred             EEEcc-CCceeEEeecCCcCeEEEeeeecCCceEEEEec-CCCcEEEEecCCCC-ceeeecCCCCceEEEEEccCCCeee
Q 001415          493 VWDAT-NGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTA-LDGKIKAWLYDNLG-SRVDYEAPGRWCTTMAYSADGTRTY  569 (1082)
Q Consensus       493 vwd~~-~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~-~dg~i~iwd~~~~~-~~~~~~~~~~~v~~~~~s~d~~~~~  569 (1082)
                      ||.+. .+.....+..+.+.+....|+++  |+.|+..+ .++...+|.++... ....+........            
T Consensus       266 Iy~~d~~~~~~~~lt~~~~~~~~~~wSpD--G~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~~g~~~~------------  331 (427)
T PRK02889        266 IYTVNADGSGLRRLTQSSGIDTEPFFSPD--GRSIYFTSDRGGAPQIYRMPASGGAAQRVTFTGSYNT------------  331 (427)
T ss_pred             EEEEECCCCCcEECCCCCCCCcCeEEcCC--CCEEEEEecCCCCcEEEEEECCCCceEEEecCCCCcC------------
Confidence            77653 23345666656655666777654  46666554 35667777654211 1111111111111            


Q ss_pred             ecccccceeEEEecCCCCEEEEEeCCC---eEEEEECCCcceEEEEecCCCCCCcCeEEEcCCCCEEEEEECCC
Q 001415          570 QGFRKRSLGVVQFDTTKNRFLAAGDDF---SIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDN  640 (1082)
Q Consensus       570 ~~~~~~~i~~~~~~~~~~~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg  640 (1082)
                               ...|+|+|++++..+.++   .|.+||+.+++...... ..   ......|+|||+.|+..+.++
T Consensus       332 ---------~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~lt~-~~---~~~~p~~spdg~~l~~~~~~~  392 (427)
T PRK02889        332 ---------SPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTALTD-TT---RDESPSFAPNGRYILYATQQG  392 (427)
T ss_pred             ---------ceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEEccC-CC---CccCceECCCCCEEEEEEecC
Confidence                     234566666777655443   69999998887543322 21   246789999999998877554

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=99.43  E-value=9.7e-08  Score=116.06  Aligned_cols=521  Identities=13%  Similarity=0.112  Sum_probs=271.8

Q ss_pred             CCCceEEEEecCCCeEEEE-EcCCC--cEEEEEccccceeeeeceeeeccCCCCcccccccccCCCCceeEEEEecCCCe
Q 001415          358 GSSPMSMDFHPVQQTLLLV-GTNVG--DIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSL  434 (1082)
Q Consensus       358 ~~~v~~~~~spdg~~llas-gs~dg--~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~  434 (1082)
                      ...+...+|.++...++++ +....  .|.+.........  ..+.-|+...         .....+.|.++.|-+|...
T Consensus        21 ~~~~~~~~~d~~sd~i~~~~~~~~~~~~i~~~~~~~~~~~--~~l~s~~~~~---------~~~~~~~ivs~~yl~d~~~   89 (928)
T PF04762_consen   21 DLPITATAFDSDSDSIYFVLGPNEIDYVIELDRFSQDGSV--EVLASWDAPL---------PDDPNDKIVSFQYLADSES   89 (928)
T ss_pred             ccccceEEEecCCCeEEEEECCCCcceEEEEEeeccCCce--eEEEeccccC---------CcCCCCcEEEEEeccCCCc
Confidence            3467788888877654443 33322  2444433322211  1111122110         1234578999999999999


Q ss_pred             EEEEeCCCeEEEE----EccCCceeeEEEEeeccccCeeEEEecCCCCceEEEEEeCCCcEEEEEccCC-----------
Q 001415          435 FGVAYSRHIVQIY----SYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNG-----------  499 (1082)
Q Consensus       435 las~~~d~~v~iw----d~~~~~~~~~~~~~~~h~~~V~~l~fs~dg~~~~l~s~s~d~~i~vwd~~~~-----------  499 (1082)
                      |+.+..+|.|.+.    +..+... .   ....-..+|.+++||||+.  +|+....++++.+-+ .+-           
T Consensus        90 l~~~~~~Gdi~~~~~~~~~~~~~~-E---~VG~vd~GI~a~~WSPD~E--lla~vT~~~~l~~mt-~~fd~i~E~~l~~~  162 (928)
T PF04762_consen   90 LCIALASGDIILVREDPDPDEDEI-E---IVGSVDSGILAASWSPDEE--LLALVTGEGNLLLMT-RDFDPISEVPLDSD  162 (928)
T ss_pred             EEEEECCceEEEEEccCCCCCcee-E---EEEEEcCcEEEEEECCCcC--EEEEEeCCCEEEEEe-ccceEEEEeecCcc
Confidence            9999999999999    5444332 1   2333467899999999999  566666677776643 111           


Q ss_pred             -------------ceeEEeecCCcC------------------e----EEEeeeecCCceEEEEecC---C---CcEEEE
Q 001415          500 -------------AKQYIFEGHEAP------------------V----YSVCPHHKENIQFIFSTAL---D---GKIKAW  538 (1082)
Q Consensus       500 -------------~~~~~~~~h~~~------------------v----~~~~~~~~~~~~~l~s~~~---d---g~i~iw  538 (1082)
                                   +.-..|.|..+.                  +    ..+.++..+||.++++.+.   .   +.+|+|
T Consensus       163 ~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy  242 (928)
T PF04762_consen  163 DFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVY  242 (928)
T ss_pred             ccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEE
Confidence                         111112111110                  1    2233445678888888764   2   468888


Q ss_pred             ecCCCCceeeecCCCCceEEEEEccCCCeeeecccccceeEEEecCCCCEEEEEeC---CCeEEEEECCCcceEEEEecC
Q 001415          539 LYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGD---DFSIKFWDMDSVQLLTSIDAD  615 (1082)
Q Consensus       539 d~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~---dg~i~iwd~~~~~~~~~~~~~  615 (1082)
                      +-+. ......+    ++                 .+--..++|-|.|+.+++...   ...|.+|.- +|-....+...
T Consensus       243 ~ReG-~L~stSE----~v-----------------~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfEr-NGLrhgeF~l~  299 (928)
T PF04762_consen  243 SREG-ELQSTSE----PV-----------------DGLEGALSWRPSGNLIASSQRLPDRHDVVFFER-NGLRHGEFTLR  299 (928)
T ss_pred             CCCc-eEEeccc----cC-----------------CCccCCccCCCCCCEEEEEEEcCCCcEEEEEec-CCcEeeeEecC
Confidence            6541 1111111    11                 112234566677777776543   456777763 44444444333


Q ss_pred             --CCCCCcCeEEEcCCCCEEEEEECCCcEEEEEecCCccceeecccccccccccccccCCCCccccCC-CCceeeeccCC
Q 001415          616 --GGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKNGDVRSLAD-VKPRITEESND  692 (1082)
Q Consensus       616 --~~~~~i~~~~~s~dg~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~-~~~l~~~~~d~  692 (1082)
                        .....|..++|++|+..|++...|. |.+|-..+-.-.++..-..........+.|       .|. ...+.....++
T Consensus       300 ~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~~~~~~~~W-------dpe~p~~L~v~t~~g  371 (928)
T PF04762_consen  300 FDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSSESVNFVKW-------DPEKPLRLHVLTSNG  371 (928)
T ss_pred             CCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCCCCCCceEE-------CCCCCCEEEEEecCC
Confidence              2334689999999999999987655 999988776322222111111100001333       333 33345555555


Q ss_pred             ceeEEEecccCCCCccccccccCcccccceeEEEEc----cCCceeeecccCCeEEEeeccccccCCCCCcccccCcccc
Q 001415          693 KSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFT----NSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLW  768 (1082)
Q Consensus       693 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s----~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~  768 (1082)
                      .+..++..-                      .+..+    |+..-.++.-....+.+-.+.....-|.-           
T Consensus       372 ~~~~~~~~~----------------------~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPM-----------  418 (928)
T PF04762_consen  372 QYEIYDFAW----------------------DVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPM-----------  418 (928)
T ss_pred             cEEEEEEEE----------------------EEEecCCCCccCceEEEEEeCCeEEEecccccCCCchH-----------
Confidence            555444321                      11111    11111222222223343322211110000           


Q ss_pred             CCCCcceeecccCCCCCCCCccEEEeecCCCeEEEe-eCCeEEEEecCCCeeE--------EEEC----------CCCCC
Q 001415          769 QPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSA-SGGKISLFNMMTFKTM--------ATFM----------PPPPA  829 (1082)
Q Consensus       769 ~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~l~~~-sdg~i~iwd~~~~~~~--------~~~~----------~~~~~  829 (1082)
                         ....    +   .....|.+++|++++..+++- +||.|.+|........        ..+.          .....
T Consensus       419 ---s~~~----l---~~~~~v~~vaf~~~~~~~avl~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  488 (928)
T PF04762_consen  419 ---SSYE----L---ELPSPVNDVAFSPSNSRFAVLTSDGSLSIYEWDLKNMWSVKPPKLLSSISLDSMDISDSELPLGS  488 (928)
T ss_pred             ---hceE----E---cCCCCcEEEEEeCCCCeEEEEECCCCEEEEEecCCCcccccCcchhhhccccccccccccccccc
Confidence               0000    1   145789999999998755555 5898888885432111        1111          12345


Q ss_pred             eeEEEEecCCCcEEEEEeCC---CcEEEEecccce---eeeeecccccCEEEEEEeCCCCEEEEEeCCCcEEEEEcCCcc
Q 001415          830 ATFLAFHPQDNNIIAIGMDD---SSIQIYNVRVDE---VKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWE  903 (1082)
Q Consensus       830 v~~l~~sp~~~~~lasg~~d---g~v~iwd~~~~~---~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~  903 (1082)
                      +..++|.. +..+++....+   ..+.++++...+   .+.....-.+.+..+...++...++.-..||.+...+.....
T Consensus       489 ~~~~~~~~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~G~v~~~~~~~~~  567 (928)
T PF04762_consen  489 LRQLAWLN-DDTLLVLSDSDSNQSKIVLVDIDDSENSASVESSTEVDGVVLIISSSPDSGSLYIQTNDGKVFQLSSDGEL  567 (928)
T ss_pred             EEEEEEeC-CCEEEEEEecCcccceEEEEEeccCCCceeEEEEeccCceEEEEeeCCCCcEEEEEECCCEEEEeecCCCc
Confidence            78889988 56666655554   578888874332   223333334556666666665556667779988766655532


Q ss_pred             cccceeeeccCCCCCCCCCCcEEEEcCCCc--EEEEE--ecCeEEEEEccCcceeeeeccCCCCcceeEEEEcCCCceEE
Q 001415          904 KQKNRFLQIPTGRTPTAQSDTRVQFHQDQI--HFLVV--HETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVY  979 (1082)
Q Consensus       904 ~~~~~~~~~~~~~~~~~~~v~~~~fspdg~--~l~~~--~d~~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~dg~~l~  979 (1082)
                      ...   .+.+..     ..-..+....+..  .++.+  ..+.+++    ++..+        ...+++.++.  +.+|+
T Consensus       568 ~~~---~~fp~~-----c~~~~~~~~~~~~~~~~~~GLs~~~~Ly~----n~~~l--------a~~~tSF~v~--~~~Ll  625 (928)
T PF04762_consen  568 SQI---VKFPQP-----CPWMEVCQINGSEDKRVLFGLSSNGRLYA----NSRLL--------ASNCTSFAVT--DSFLL  625 (928)
T ss_pred             ccc---ccCCCC-----CcEEEEEEECCccceeEEEEECCCCEEEE----CCEEE--------ecCCceEEEE--cCEEE
Confidence            111   111111     1112222222222  23333  3344443    22222        2456777764  56777


Q ss_pred             EeecCCcEEEEecC
Q 001415          980 ACFLDATVCVFSAA  993 (1082)
Q Consensus       980 t~s~dg~v~vwd~~  993 (1082)
                      .......+++.++.
T Consensus       626 ~TT~~h~l~fv~L~  639 (928)
T PF04762_consen  626 FTTTQHTLKFVHLN  639 (928)
T ss_pred             EEecCceEEEEECc
Confidence            77778888988888

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.42  E-value=1.1e-12  Score=134.36  Aligned_cols=273  Identities=13%  Similarity=0.127  Sum_probs=196.8

Q ss_pred             CceeEEEEecCCCeEEEEeCCCeEEEEEccCCceeeEEEEeeccccCeeEEEecCCCCceEEEEEeCCCcEEEEEccCCc
Q 001415          421 VSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGA  500 (1082)
Q Consensus       421 ~~V~~l~~spdg~~las~~~d~~v~iwd~~~~~~~~~~~~~~~h~~~V~~l~fs~dg~~~~l~s~s~d~~i~vwd~~~~~  500 (1082)
                      -.-..+.++.+|++|+.|+..|.|..+|+.++....   ++. -...|.++.|-.+.+  ++|.+ ....+.||| ..|.
T Consensus       130 FGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~---Ei~-v~Etv~Dv~~LHneq--~~AVA-QK~y~yvYD-~~Gt  201 (545)
T KOG1272|consen  130 FGPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHF---EIN-VMETVRDVTFLHNEQ--FFAVA-QKKYVYVYD-NNGT  201 (545)
T ss_pred             cCCeeeeecCCccEEEecCCccceeeeecccceeee---eee-hhhhhhhhhhhcchH--HHHhh-hhceEEEec-CCCc
Confidence            356789999999999999999999999999988665   332 245789999998888  45544 567899999 8899


Q ss_pred             eeEEeecCCcCeEEEeeeecCCceEEEEecCCCcEEEEecCCCCceeeecCCCCceEEEEEccCCCeeeecccccceeEE
Q 001415          501 KQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVV  580 (1082)
Q Consensus       501 ~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~i~~~  580 (1082)
                      .++.++.| ..|..+.|.|.-  -+|++++..|.++.-|+.+++.+..+....+.+..+.                    
T Consensus       202 ElHClk~~-~~v~rLeFLPyH--fLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~--------------------  258 (545)
T KOG1272|consen  202 ELHCLKRH-IRVARLEFLPYH--FLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMK--------------------  258 (545)
T ss_pred             EEeehhhc-Cchhhhcccchh--heeeecccCCceEEEeechhhhhHHHHccCCccchhh--------------------
Confidence            99988855 578888887654  5788888899999999998877766665555444444                    


Q ss_pred             EecCCCCEEEEEeCCCeEEEEECCCcceEEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEecCCccceeecccc
Q 001415          581 QFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENL  660 (1082)
Q Consensus       581 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~  660 (1082)
                       -+|-+..+-+|...|+|.+|.....+++..+..|.+  +|.++++.++|+|+++.+.|..++|||+++-.++......+
T Consensus       259 -qNP~NaVih~GhsnGtVSlWSP~skePLvKiLcH~g--~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~tp~  335 (545)
T KOG1272|consen  259 -QNPYNAVIHLGHSNGTVSLWSPNSKEPLVKILCHRG--PVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRTPH  335 (545)
T ss_pred             -cCCccceEEEcCCCceEEecCCCCcchHHHHHhcCC--CcceEEECCCCcEEeecccccceeEeeeccccccceeecCC
Confidence             444445677888999999999999988887776655  79999999999999999999999999998875443333222


Q ss_pred             cccccccccccCCCCccccCCCCceeeeccCCceeEEEecccCCCCccccccccCcccccceeEEEEccCCceeeecccC
Q 001415          661 AYDASRTSENSKNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASN  740 (1082)
Q Consensus       661 ~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d  740 (1082)
                      ...    .+++         ..+-+++.+....+.+|.-...... ......+ .+.....|..+.|.|-...|-.+...
T Consensus       336 ~a~----~ls~---------SqkglLA~~~G~~v~iw~d~~~~s~-~~~~pYm-~H~~~~~V~~l~FcP~EDvLGIGH~~  400 (545)
T KOG1272|consen  336 PAS----NLSL---------SQKGLLALSYGDHVQIWKDALKGSG-HGETPYM-NHRCGGPVEDLRFCPYEDVLGIGHAG  400 (545)
T ss_pred             Ccc----cccc---------ccccceeeecCCeeeeehhhhcCCC-CCCcchh-hhccCcccccceeccHHHeeeccccC
Confidence            111    2222         3334555666678889974432211 1111111 11234588999999987766555555


Q ss_pred             Ce
Q 001415          741 AI  742 (1082)
Q Consensus       741 ~~  742 (1082)
                      |.
T Consensus       401 G~  402 (545)
T KOG1272|consen  401 GI  402 (545)
T ss_pred             Cc
Confidence            43

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.42  E-value=7.3e-11  Score=134.27  Aligned_cols=215  Identities=13%  Similarity=0.152  Sum_probs=136.6

Q ss_pred             CcEEEEEccccceeeeeceeeeccCCCCcccccccccCCCCceeEEEEecCCCeEEEEeCC---CeEEEEEccCCceeeE
Q 001415          381 GDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSR---HIVQIYSYHGGDEVRQ  457 (1082)
Q Consensus       381 g~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d---~~v~iwd~~~~~~~~~  457 (1082)
                      ..|.+||...+....                    +..|...+.+.+|||||+.||..+.+   ..|.+||+.+++... 
T Consensus       184 ~~l~i~D~~g~~~~~--------------------lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~-  242 (433)
T PRK04922        184 YALQVADSDGYNPQT--------------------ILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL-  242 (433)
T ss_pred             EEEEEECCCCCCceE--------------------eecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE-
Confidence            468888886543322                    45667789999999999999988743   469999998876432 


Q ss_pred             EEEeeccccCeeEEEecCCCCceEEEEEeCCC--cEEEEEccCCceeEEeecCCcCeEEEeeeecCCceEEEEec-CCCc
Q 001415          458 HLEIDAHVGGVNDIAFSHPNKQLCVITCGDDK--TIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTA-LDGK  534 (1082)
Q Consensus       458 ~~~~~~h~~~V~~l~fs~dg~~~~l~s~s~d~--~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~-~dg~  534 (1082)
                         +..+.+...+++|+|||+. ++++.+.++  .|.+||+.+++. ..+..+.......+|+++  |+.|+.++ .+|.
T Consensus       243 ---l~~~~g~~~~~~~SpDG~~-l~~~~s~~g~~~Iy~~d~~~g~~-~~lt~~~~~~~~~~~spD--G~~l~f~sd~~g~  315 (433)
T PRK04922        243 ---VASFRGINGAPSFSPDGRR-LALTLSRDGNPEIYVMDLGSRQL-TRLTNHFGIDTEPTWAPD--GKSIYFTSDRGGR  315 (433)
T ss_pred             ---eccCCCCccCceECCCCCE-EEEEEeCCCCceEEEEECCCCCe-EECccCCCCccceEECCC--CCEEEEEECCCCC
Confidence               3344455668899999996 344555555  599999988775 445556555566777654  46666655 4455


Q ss_pred             --EEEEecCCCCceeeecCCCCceEEEEEccCCCeeeecccccceeEEEecCCCCEEEEEeCC---CeEEEEECCCcceE
Q 001415          535 --IKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDD---FSIKFWDMDSVQLL  609 (1082)
Q Consensus       535 --i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---g~i~iwd~~~~~~~  609 (1082)
                        |.++|+.++... .+.........                     .+|+|+|++++..+.+   ..|.+||+.+++..
T Consensus       316 ~~iy~~dl~~g~~~-~lt~~g~~~~~---------------------~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~  373 (433)
T PRK04922        316 PQIYRVAASGGSAE-RLTFQGNYNAR---------------------ASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR  373 (433)
T ss_pred             ceEEEEECCCCCeE-EeecCCCCccC---------------------EEECCCCCEEEEEECCCCceeEEEEECCCCCeE
Confidence              555555443321 11112222223                     4455555566654432   36999999887755


Q ss_pred             EEEecCCCCCCcCeEEEcCCCCEEEEEECC---CcEEEEEecC
Q 001415          610 TSIDADGGLPASPRIRFNKDGCLLAVSTND---NGIKILATSD  649 (1082)
Q Consensus       610 ~~~~~~~~~~~i~~~~~s~dg~~l~~~~~d---g~i~iwd~~~  649 (1082)
                       .+.. ..  ......|+|||++++..+.+   +.+.+++...
T Consensus       374 -~Lt~-~~--~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g  412 (433)
T PRK04922        374 -TLTP-GS--LDESPSFAPNGSMVLYATREGGRGVLAAVSTDG  412 (433)
T ss_pred             -ECCC-CC--CCCCceECCCCCEEEEEEecCCceEEEEEECCC
Confidence             3322 21  24567999999988877653   3466666643

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=99.41  E-value=5e-10  Score=116.93  Aligned_cols=324  Identities=11%  Similarity=0.136  Sum_probs=185.9

Q ss_pred             EEEecCCCCEEEEEeCCCeEEEEECCCcceEEEEecCCCCCCcCeEEEcCCCCEEEEEECCC---------------cEE
Q 001415          579 VVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDN---------------GIK  643 (1082)
Q Consensus       579 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg---------------~i~  643 (1082)
                      .++++|.|.+|++.... .|.+|....+..+..+...    .|..+.|+|.+++|.+-+..+               .+.
T Consensus        37 ~~~~SP~G~~l~~~~~~-~V~~~~g~~~~~l~~~~~~----~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~  111 (561)
T COG5354          37 YVSESPLGTYLFSEHAA-GVECWGGPSKAKLVRFRHP----DVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVF  111 (561)
T ss_pred             heeecCcchheehhhcc-ceEEccccchhheeeeecC----CceecccCcccceeeeeccCCccChhhccCCccccCcee
Confidence            33444444466665544 4889988777655555422    478899999999999875444               388


Q ss_pred             EEEecCCccceeecccccccc-cccccccCCCCccccCCCCceeeeccCCceeEEEecccCCCCccccccccCcccccce
Q 001415          644 ILATSDGIRLLRTFENLAYDA-SRTSENSKNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKI  722 (1082)
Q Consensus       644 iwd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i  722 (1082)
                      +||..++ .++..+....... ....+.|       +.+..+.+-. ....+.++++...........+      ....|
T Consensus       112 vwd~~sg-~iv~sf~~~~q~~~~Wp~~k~-------s~~D~y~ARv-v~~sl~i~e~t~n~~~~p~~~l------r~~gi  176 (561)
T COG5354         112 VWDIASG-MIVFSFNGISQPYLGWPVLKF-------SIDDKYVARV-VGSSLYIHEITDNIEEHPFKNL------RPVGI  176 (561)
T ss_pred             EEeccCc-eeEeeccccCCcccccceeee-------eecchhhhhh-ccCeEEEEecCCccccCchhhc------cccce
Confidence            9999888 5555555443331 0002222       5555554433 2345666665322222222222      12345


Q ss_pred             eEEEEccCCceeeecccCCeEEEeeccccccCCCCCcccccCccccCCCCcceeecccCCCCCCCCccEEEeecCCCeEE
Q 001415          723 SRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVM  802 (1082)
Q Consensus       723 ~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~l~  802 (1082)
                      ....|+|.++       ...+..|--.                      .                              
T Consensus       177 ~dFsisP~~n-------~~~la~~tPE----------------------k------------------------------  197 (561)
T COG5354         177 LDFSISPEGN-------HDELAYWTPE----------------------K------------------------------  197 (561)
T ss_pred             eeEEecCCCC-------CceEEEEccc----------------------c------------------------------
Confidence            5555665541       1112222100                      0                              


Q ss_pred             EeeCCeEEEEecCCCeeEEEECCCCCCeeEEEEecCCCcEEEEEe-----------CCCcEEEEecccceeeeeeccccc
Q 001415          803 SASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGM-----------DDSSIQIYNVRVDEVKSKLKGHSK  871 (1082)
Q Consensus       803 ~~sdg~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasg~-----------~dg~v~iwd~~~~~~~~~l~~h~~  871 (1082)
                      .+..+.+++|.+..++.+.+..-....-..+.|.+ .|.+|++--           ....++|+++....+... .+-.+
T Consensus       198 ~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~-~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i~V~-~~~~~  275 (561)
T COG5354         198 LNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQV-LGKYLLVLVMTHTKSNKSYFGESNLYLLRITERSIPVE-KDLKD  275 (561)
T ss_pred             CCCCcEEEEEEccCCCeeeeeeeEeecccEEEEec-CCceEEEEEEEeeecccceeccceEEEEeeccccccee-ccccc
Confidence            01124455555554443333222222223344555 333332211           135788888874443333 36689


Q ss_pred             CEEEEEEeCCCCEEEEEe--CCCcEEEEEcCCcccccceeeeccCCCCCCCCCCcEEEEcCCCcEEEE-Eec---CeEEE
Q 001415          872 RITGLAFSHALNVLVSSG--ADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHE---TQLAI  945 (1082)
Q Consensus       872 ~V~~l~~s~d~~~l~s~s--~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~-~~d---~~i~i  945 (1082)
                      +|...+|.|+++.+++.+  .+..+.++|+++.     ...-.+++.      -..+.|||.++++++ +.+   |.+.+
T Consensus       276 pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N-----l~~~~Pe~~------rNT~~fsp~~r~il~agF~nl~gni~i  344 (561)
T COG5354         276 PVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN-----LRFYFPEQK------RNTIFFSPHERYILFAGFDNLQGNIEI  344 (561)
T ss_pred             cceeeeecccCCceeEEecccccceeecccccc-----eEEecCCcc------cccccccCcccEEEEecCCccccceEE
Confidence            999999999998876654  6788999999883     122233322      257889999999988 444   67999


Q ss_pred             EEccCcceee-eeccCCCCcceeEEEEcCCCceEEEee------cCCcEEEEecCCceee
Q 001415          946 FETTKLECVK-QWVPRESSAPITHATFSCDSQLVYACF------LDATVCVFSAANLKLR  998 (1082)
Q Consensus       946 wd~~~~~~~~-~~~~~~h~~~i~~l~~s~dg~~l~t~s------~dg~v~vwd~~~~~~~  998 (1082)
                      ||....-.+. .+.    ....+-+.|||||+++.+..      .|..|+|||+......
T Consensus       345 ~~~~~rf~~~~~~~----~~n~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g~~~f  400 (561)
T COG5354         345 FDPAGRFKVAGAFN----GLNTSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVYGAKVF  400 (561)
T ss_pred             eccCCceEEEEEee----cCCceEeeccCCceEEEecCCCcccccCcceEEEEecCchhh
Confidence            9986544333 444    23345567999999987765      4788999999765443

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.41  E-value=6.7e-11  Score=116.90  Aligned_cols=349  Identities=16%  Similarity=0.237  Sum_probs=212.4

Q ss_pred             ccCeeEEEecCCCCceEEEEEeCCCcEEEEEccCCc-----eeEEeecCC------------cCeEEEeeeecCCceEEE
Q 001415          465 VGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGA-----KQYIFEGHE------------APVYSVCPHHKENIQFIF  527 (1082)
Q Consensus       465 ~~~V~~l~fs~dg~~~~l~s~s~d~~i~vwd~~~~~-----~~~~~~~h~------------~~v~~~~~~~~~~~~~l~  527 (1082)
                      .+-|.++.|...|.  +|++|..+|.|.++.-....     ....+..|.            ..|..+.|....+...++
T Consensus        25 adiis~vef~~~Ge--~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FL  102 (433)
T KOG1354|consen   25 ADIISAVEFDHYGE--RLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFL  102 (433)
T ss_pred             hcceeeEEeecccc--eEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEE
Confidence            45789999999999  89999999999999744322     223444443            357788888888888888


Q ss_pred             EecCCCcEEEEecCCCCcee-----eecCCCCceEEEEEc---c-------CCCeeeecccccceeEEEecCCCCEEEEE
Q 001415          528 STALDGKIKAWLYDNLGSRV-----DYEAPGRWCTTMAYS---A-------DGTRTYQGFRKRSLGVVQFDTTKNRFLAA  592 (1082)
Q Consensus       528 s~~~dg~i~iwd~~~~~~~~-----~~~~~~~~v~~~~~s---~-------d~~~~~~~~~~~~i~~~~~~~~~~~l~~~  592 (1082)
                      ..+.|.+|++|.+.......     ........+.++..-   +       ..++++...+...+.++.++.|...++++
T Consensus       103 lstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSA  182 (433)
T KOG1354|consen  103 LSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSA  182 (433)
T ss_pred             EecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeec
Confidence            89999999999886543322     111111222222111   1       11256666667789999999999988876


Q ss_pred             eCCCeEEEEECCC-cceEEEEecCCC-----CCCcCeEEEcC-CCCEEEEEECCCcEEEEEecCCccceeeccccccccc
Q 001415          593 GDDFSIKFWDMDS-VQLLTSIDADGG-----LPASPRIRFNK-DGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDAS  665 (1082)
Q Consensus       593 ~~dg~i~iwd~~~-~~~~~~~~~~~~-----~~~i~~~~~s~-dg~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~  665 (1082)
                      . |=.|.+|+++- .+..........     ..-|++..|+| ..+.++-.+..|+|++-|++...-+..          
T Consensus       183 D-dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~----------  251 (433)
T KOG1354|consen  183 D-DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDA----------  251 (433)
T ss_pred             c-ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcc----------
Confidence            5 66799999863 222222222111     12478889999 456777778889999999875411100          


Q ss_pred             ccccccCCCCccccCCCCceeeeccCCceeEEEecccCCCCccccccccCcccccceeEEEEccCCceeeecccCCeEEE
Q 001415          666 RTSENSKNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLL  745 (1082)
Q Consensus       666 ~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~i  745 (1082)
                                                 .-+++...              .    +        |..+             
T Consensus       252 ---------------------------hsKlfEep--------------e----d--------p~~r-------------  265 (433)
T KOG1354|consen  252 ---------------------------HSKLFEEP--------------E----D--------PSSR-------------  265 (433)
T ss_pred             ---------------------------hhhhhccc--------------c----C--------Ccch-------------
Confidence                                       00000000              0    0        0000             


Q ss_pred             eeccccccCCCCCcccccCccccCCCCcceeecccCCCCCCCCccEEEeecCCCeEEEeeCCeEEEEec-CCCeeEEEEC
Q 001415          746 WKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNM-MTFKTMATFM  824 (1082)
Q Consensus       746 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~l~~~sdg~i~iwd~-~~~~~~~~~~  824 (1082)
                                                  ....      +--..|..+.|+++|+|+++-+--+|++||+ ...+++.+++
T Consensus       266 ----------------------------sffs------eiIsSISDvKFs~sGryilsRDyltvk~wD~nme~~pv~t~~  311 (433)
T KOG1354|consen  266 ----------------------------SFFS------EIISSISDVKFSHSGRYILSRDYLTVKLWDLNMEAKPVETYP  311 (433)
T ss_pred             ----------------------------hhHH------HHhhhhhceEEccCCcEEEEeccceeEEEeccccCCcceEEe
Confidence                                        0000      0234567788899999988887788999998 3566666666


Q ss_pred             CCCC------------C---eeEEEEecCCCcEEEEEeCCCcEEEEeccccee-eeeecccccC--EEEEEEeCCCCEEE
Q 001415          825 PPPP------------A---ATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEV-KSKLKGHSKR--ITGLAFSHALNVLV  886 (1082)
Q Consensus       825 ~~~~------------~---v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~-~~~l~~h~~~--V~~l~~s~d~~~l~  886 (1082)
                      -|..            .   -..++|+. ++.++++|+....++++++..|.. -.++......  ...+   ..-+.+.
T Consensus       312 vh~~lr~kLc~lYEnD~IfdKFec~~sg-~~~~v~TGsy~n~frvf~~~~gsk~d~tl~asr~~~~~~~~---~k~~~V~  387 (433)
T KOG1354|consen  312 VHEYLRSKLCSLYENDAIFDKFECSWSG-NDSYVMTGSYNNVFRVFNLARGSKEDFTLEASRKNMKPRKV---LKLRLVS  387 (433)
T ss_pred             ehHhHHHHHHHHhhccchhheeEEEEcC-CcceEecccccceEEEecCCCCcceeecccccccCCccccc---ccceeee
Confidence            5531            1   24688998 788999999999999999766532 2223222211  1111   1123344


Q ss_pred             EEeCCCcEEEEEcCCcccccceeeeccCCCCCCCCCCcEEEEcCCCcEEEEEecCeEEEE
Q 001415          887 SSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIF  946 (1082)
Q Consensus       887 s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~~d~~i~iw  946 (1082)
                      +++......+|-..-         ...       ..+...+|+|....+|++..+.++||
T Consensus       388 ~~g~r~~~~~~vd~l---------df~-------kkilh~aWhp~en~ia~aatnnlyif  431 (433)
T KOG1354|consen  388 SSGKRKRDEISVDAL---------DFR-------KKILHTAWHPKENSIAVAATNNLYIF  431 (433)
T ss_pred             cCCCccccccccchh---------hhh-------hHHHhhccCCccceeeeeecCceEEe
Confidence            444443322221100         000       23567889999999998777777776

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=99.41  E-value=4e-10  Score=117.62  Aligned_cols=361  Identities=13%  Similarity=0.186  Sum_probs=226.0

Q ss_pred             cCCCCceeEEEEecCCCeEEEEeCCCeEEEEEccCCceeeEEEEeeccccCeeEEEecCCCCceEEEEEeCCC-------
Q 001415          417 KDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDK-------  489 (1082)
Q Consensus       417 ~~h~~~V~~l~~spdg~~las~~~d~~v~iwd~~~~~~~~~~~~~~~h~~~V~~l~fs~dg~~~~l~s~s~d~-------  489 (1082)
                      ....-++..++|||.|++|++....+ |.+|....+..+.   .+.  ...|..+.|||.++  ||++-+...       
T Consensus        29 ~~~~~p~~~~~~SP~G~~l~~~~~~~-V~~~~g~~~~~l~---~~~--~~~V~~~~fSP~~k--YL~tw~~~pi~~pe~e  100 (561)
T COG5354          29 ESENWPVAYVSESPLGTYLFSEHAAG-VECWGGPSKAKLV---RFR--HPDVKYLDFSPNEK--YLVTWSREPIIEPEIE  100 (561)
T ss_pred             cccCcchhheeecCcchheehhhccc-eEEccccchhhee---eee--cCCceecccCcccc--eeeeeccCCccChhhc
Confidence            33556899999999999999887655 9999988776433   232  34699999999999  888875433       


Q ss_pred             --------cEEEEEccCCceeEEeecCCcC--eE-EEeeeecCCceEEEEecCCCcEEEEecCCCCceeee-cCCCCceE
Q 001415          490 --------TIKVWDATNGAKQYIFEGHEAP--VY-SVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDY-EAPGRWCT  557 (1082)
Q Consensus       490 --------~i~vwd~~~~~~~~~~~~h~~~--v~-~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-~~~~~~v~  557 (1082)
                              .+.+||+.+|..+..+.+...+  .+ -+.|+.+.  .+++-. ....+.++++...-....+ ......+.
T Consensus       101 ~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D--~y~ARv-v~~sl~i~e~t~n~~~~p~~~lr~~gi~  177 (561)
T COG5354         101 ISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDD--KYVARV-VGSSLYIHEITDNIEEHPFKNLRPVGIL  177 (561)
T ss_pred             cCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecc--hhhhhh-ccCeEEEEecCCccccCchhhcccccee
Confidence                    4999999999999999876655  34 45565544  344333 3456888886221111111 11234566


Q ss_pred             EEEEccCCCeeeecccccceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEEecCCCCCCcCeEEEcCCCCEEEEEE
Q 001415          558 TMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVST  637 (1082)
Q Consensus       558 ~~~~s~d~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~  637 (1082)
                      ..+++|.+..        . ..+-|.|.     ..+.++++++|.+..+..+.+-....-  .-..+.|.+.|++|++-.
T Consensus       178 dFsisP~~n~--------~-~la~~tPE-----k~~kpa~~~i~sIp~~s~l~tk~lfk~--~~~qLkW~~~g~~ll~l~  241 (561)
T COG5354         178 DFSISPEGNH--------D-ELAYWTPE-----KLNKPAMVRILSIPKNSVLVTKNLFKV--SGVQLKWQVLGKYLLVLV  241 (561)
T ss_pred             eEEecCCCCC--------c-eEEEEccc-----cCCCCcEEEEEEccCCCeeeeeeeEee--cccEEEEecCCceEEEEE
Confidence            6777776531        0 01222222     146788999999987766554432221  124688899998877532


Q ss_pred             CCCcEEEEEecCCccceeecccccccccccccccCCCCccccCCCCceeeeccCCceeEEEecccCCCCccccccccCcc
Q 001415          638 NDNGIKILATSDGIRLLRTFENLAYDASRTSENSKNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENL  717 (1082)
Q Consensus       638 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~  717 (1082)
                      ..      +..+++..                                   -....++++++....    ++...    .
T Consensus       242 ~t------~~ksnKsy-----------------------------------fgesnLyl~~~~e~~----i~V~~----~  272 (561)
T COG5354         242 MT------HTKSNKSY-----------------------------------FGESNLYLLRITERS----IPVEK----D  272 (561)
T ss_pred             EE------eeecccce-----------------------------------eccceEEEEeecccc----cceec----c
Confidence            11      11111000                                   001344555554211    11110    1


Q ss_pred             cccceeEEEEccCCceeeecc--cCCeEEEeeccccccCCCCCcccccCccccCCCCcceeecccCCCCCCCCccEEEee
Q 001415          718 RATKISRLIFTNSGNAILALA--SNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALS  795 (1082)
Q Consensus       718 ~~~~i~~~~~s~~~~~l~~~~--~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s  795 (1082)
                      ..+.|..++|.|.++.+++.+  ....+.++++..                      .....  +    ....=..+.||
T Consensus       273 ~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~----------------------Nl~~~--~----Pe~~rNT~~fs  324 (561)
T COG5354         273 LKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRG----------------------NLRFY--F----PEQKRNTIFFS  324 (561)
T ss_pred             ccccceeeeecccCCceeEEecccccceeeccccc----------------------ceEEe--c----CCccccccccc
Confidence            467899999999998776655  456666665432                      21111  1    33444567899


Q ss_pred             cCCCeEEEee----CCeEEEEecCCCeeEE-EECCCCCCeeEEEEecCCCcEEEEEe------CCCcEEEEecccceeee
Q 001415          796 KNDSYVMSAS----GGKISLFNMMTFKTMA-TFMPPPPAATFLAFHPQDNNIIAIGM------DDSSIQIYNVRVDEVKS  864 (1082)
Q Consensus       796 ~dg~~l~~~s----dg~i~iwd~~~~~~~~-~~~~~~~~v~~l~~sp~~~~~lasg~------~dg~v~iwd~~~~~~~~  864 (1082)
                      |.+++++.++    .|.+.+||....-.+. .+.+.  ..+-+.|+| |++++.+..      .|..|.|||+...... 
T Consensus       325 p~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~~~--n~s~~~wsp-d~qF~~~~~ts~k~~~Dn~i~l~~v~g~~~f-  400 (561)
T COG5354         325 PHERYILFAGFDNLQGNIEIFDPAGRFKVAGAFNGL--NTSYCDWSP-DGQFYDTDTTSEKLRVDNSIKLWDVYGAKVF-  400 (561)
T ss_pred             CcccEEEEecCCccccceEEeccCCceEEEEEeecC--CceEeeccC-CceEEEecCCCcccccCcceEEEEecCchhh-
Confidence            9999999876    3789999987654443 55543  345678999 888887765      3778999998754432 


Q ss_pred             eecccccCEEEEEEeCCCCEEEEEeCCC
Q 001415          865 KLKGHSKRITGLAFSHALNVLVSSGADS  892 (1082)
Q Consensus       865 ~l~~h~~~V~~l~~s~d~~~l~s~s~Dg  892 (1082)
                             ..+.+.|-|.|++..+.+.+.
T Consensus       401 -------el~~~~W~p~~~~~ttsSs~~  421 (561)
T COG5354         401 -------ELTNITWDPSGQYVTTSSSCP  421 (561)
T ss_pred             -------hhhhccccCCcccceeeccCC
Confidence                   456688888888877666554

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.40  E-value=2.3e-11  Score=120.18  Aligned_cols=155  Identities=12%  Similarity=0.214  Sum_probs=107.9

Q ss_pred             eEEEEecCCCcEEEEEeC----------CCcEEEEeccc-ceeeeeecc-cccCEEEEEEeCCCCEEEEE--eCCCcEEE
Q 001415          831 TFLAFHPQDNNIIAIGMD----------DSSIQIYNVRV-DEVKSKLKG-HSKRITGLAFSHALNVLVSS--GADSQLCV  896 (1082)
Q Consensus       831 ~~l~~sp~~~~~lasg~~----------dg~v~iwd~~~-~~~~~~l~~-h~~~V~~l~~s~d~~~l~s~--s~Dg~i~v  896 (1082)
                      ..+.|+| .|.+|++-..          -|...+|.++. +.....+.- ..++|.+++|+|+|+.+|..  ..++.|.+
T Consensus         9 ~~~~W~~-~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~l   87 (194)
T PF08662_consen    9 AKLHWQP-SGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTL   87 (194)
T ss_pred             EEEEecc-cCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEE
Confidence            4577888 5655543322          13455555532 223333332 34579999999999987654  45679999


Q ss_pred             EEcCCcccccceeeeccCCCCCCCCCCcEEEEcCCCcEEEEEe----cCeEEEEEccCcceeeeeccCCCCcceeEEEEc
Q 001415          897 WSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVH----ETQLAIFETTKLECVKQWVPRESSAPITHATFS  972 (1082)
Q Consensus       897 wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~~----d~~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s  972 (1082)
                      ||++..     .......      ..+..+.|||+|++|+++.    .|.+.+||.++.+.+....    ...++.++||
T Consensus        88 yd~~~~-----~i~~~~~------~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~----~~~~t~~~Ws  152 (194)
T PF08662_consen   88 YDVKGK-----KIFSFGT------QPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFE----HSDATDVEWS  152 (194)
T ss_pred             EcCccc-----EeEeecC------CCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccc----cCcEEEEEEc
Confidence            999741     1222221      3457899999999999943    4679999999888887764    3357899999


Q ss_pred             CCCceEEEeec------CCcEEEEecCCceeeeeeC
Q 001415          973 CDSQLVYACFL------DATVCVFSAANLKLRCRIN 1002 (1082)
Q Consensus       973 ~dg~~l~t~s~------dg~v~vwd~~~~~~~~~~~ 1002 (1082)
                      |||++|+++..      |+.++||++. |+++....
T Consensus       153 PdGr~~~ta~t~~r~~~dng~~Iw~~~-G~~l~~~~  187 (194)
T PF08662_consen  153 PDGRYLATATTSPRLRVDNGFKIWSFQ-GRLLYKKP  187 (194)
T ss_pred             CCCCEEEEEEeccceeccccEEEEEec-CeEeEecc
Confidence            99999999874      7889999985 66665543

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.39  E-value=5.7e-10  Score=122.60  Aligned_cols=251  Identities=14%  Similarity=0.215  Sum_probs=162.2

Q ss_pred             CCCccEEEeecCCCeEEEeeC-----CeEEEEecCCC--e--eEEEECCCCCCeeEEEEecCCCcEEEEEe-CCCcEEEE
Q 001415          786 EEAVPCFALSKNDSYVMSASG-----GKISLFNMMTF--K--TMATFMPPPPAATFLAFHPQDNNIIAIGM-DDSSIQIY  855 (1082)
Q Consensus       786 ~~~i~~l~~s~dg~~l~~~sd-----g~i~iwd~~~~--~--~~~~~~~~~~~v~~l~~sp~~~~~lasg~-~dg~v~iw  855 (1082)
                      ......++++|++++|.+...     +.|..|++...  +  .+............++++| ++++|+++. .+|.|.++
T Consensus        36 ~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~-~g~~l~vany~~g~v~v~  114 (345)
T PF10282_consen   36 GENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDP-DGRFLYVANYGGGSVSVF  114 (345)
T ss_dssp             SSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECT-TSSEEEEEETTTTEEEEE
T ss_pred             CCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEec-CCCEEEEEEccCCeEEEE
Confidence            345567899999999988853     57888888753  3  3333333445677899999 777777765 58999999


Q ss_pred             eccc-ceeeee---ec----------ccccCEEEEEEeCCCCEEEEEeC-CCcEEEEEcCCcc--cccceeeeccCCCCC
Q 001415          856 NVRV-DEVKSK---LK----------GHSKRITGLAFSHALNVLVSSGA-DSQLCVWSSDGWE--KQKNRFLQIPTGRTP  918 (1082)
Q Consensus       856 d~~~-~~~~~~---l~----------~h~~~V~~l~~s~d~~~l~s~s~-Dg~i~vwd~~~~~--~~~~~~~~~~~~~~~  918 (1082)
                      ++.. |.+...   +.          .......++.|+|||+++++.+. ...|.+|+++...  ......+....+   
T Consensus       115 ~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G---  191 (345)
T PF10282_consen  115 PLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPG---  191 (345)
T ss_dssp             EECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTT---
T ss_pred             EccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccC---
Confidence            9986 433222   11          11245788999999999888753 3469999998754  222222333333   


Q ss_pred             CCCCCcEEEEcCCCcEEEEE--ecCeEEEEEcc--Ccce--eeeeccC--CC--CcceeEEEEcCCCceEEEee-cCCcE
Q 001415          919 TAQSDTRVQFHQDQIHFLVV--HETQLAIFETT--KLEC--VKQWVPR--ES--SAPITHATFSCDSQLVYACF-LDATV  987 (1082)
Q Consensus       919 ~~~~v~~~~fspdg~~l~~~--~d~~i~iwd~~--~~~~--~~~~~~~--~h--~~~i~~l~~s~dg~~l~t~s-~dg~v  987 (1082)
                        ...+.++|+||++++.+.  .++.|.++++.  ++..  +......  +.  ......|+++|||++|+++. ..++|
T Consensus       192 --~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI  269 (345)
T PF10282_consen  192 --SGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSI  269 (345)
T ss_dssp             --SSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEE
T ss_pred             --CCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEE
Confidence              456899999999998885  45789999988  4432  2222111  11  22678999999999998877 45789


Q ss_pred             EEEecC--CceeeeeeCCCeecCC-CCCCCCceeeEEEEeCCCCCeEEEEe-cCCcEEEEccCCCCCcc
Q 001415          988 CVFSAA--NLKLRCRINPSAYLPA-GVSSSNVHPLVIAAHPQEPNEFALGL-SDGGVHVFEPLESEGKW 1052 (1082)
Q Consensus       988 ~vwd~~--~~~~~~~~~~~~~~~~-gh~~~~v~~~~~~~~~~d~~~l~s~~-~dg~v~vW~~~~~~~~~ 1052 (1082)
                      .+|+++  +|++. .+.   ..+. |     ..|..+.++| ||++|+++. .++.|.+|++....+.|
T Consensus       270 ~vf~~d~~~g~l~-~~~---~~~~~G-----~~Pr~~~~s~-~g~~l~Va~~~s~~v~vf~~d~~tG~l  328 (345)
T PF10282_consen  270 SVFDLDPATGTLT-LVQ---TVPTGG-----KFPRHFAFSP-DGRYLYVANQDSNTVSVFDIDPDTGKL  328 (345)
T ss_dssp             EEEEECTTTTTEE-EEE---EEEESS-----SSEEEEEE-T-TSSEEEEEETTTTEEEEEEEETTTTEE
T ss_pred             EEEEEecCCCceE-EEE---EEeCCC-----CCccEEEEeC-CCCEEEEEecCCCeEEEEEEeCCCCcE
Confidence            999993  34433 222   1111 2     3467899999 578877765 66799999886444333

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.39  E-value=7.5e-11  Score=132.55  Aligned_cols=241  Identities=10%  Similarity=0.085  Sum_probs=142.9

Q ss_pred             ccccccccccCccccCCCccCCCCCCCCcceeeecCCCCCceEEEEecCCCe--EEEEEcCCC--cEEEEEccccceeee
Q 001415          321 VNVLPVSFTGHSHSHSHSQAFSTPEDLPKTVTRTLNQGSSPMSMDFHPVQQT--LLLVGTNVG--DIGLWEVGSRERLVL  396 (1082)
Q Consensus       321 ~~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~--llasgs~dg--~i~iwd~~~~~~~~~  396 (1082)
                      -+||-++++|....                  ++......+..-+|||||+.  ++++...+|  .|.+.++.+|+... 
T Consensus       165 ~~l~~~d~dG~~~~------------------~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~-  225 (428)
T PRK01029        165 GELWSVDYDGQNLR------------------PLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKK-  225 (428)
T ss_pred             ceEEEEcCCCCCce------------------EcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceE-
Confidence            45777777775421                  33445667788899999986  333554444  47788888776543 


Q ss_pred             eceeeeccCCCCcccccccccCCCCceeEEEEecCCCeEEEEeC-----CCeEEEEEccCCc--eeeEEEEeeccccCee
Q 001415          397 RNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYS-----RHIVQIYSYHGGD--EVRQHLEIDAHVGGVN  469 (1082)
Q Consensus       397 ~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~-----d~~v~iwd~~~~~--~~~~~~~~~~h~~~V~  469 (1082)
                                         +....+.....+|||||++||..+.     +..+.+|++.++.  ....  ...++.+...
T Consensus       226 -------------------lt~~~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~--lt~~~~~~~~  284 (428)
T PRK01029        226 -------------------ILALQGNQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRR--LLNEAFGTQG  284 (428)
T ss_pred             -------------------eecCCCCccceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceE--eecCCCCCcC
Confidence                               2223445567899999999998653     2234557776532  2221  1222334456


Q ss_pred             EEEecCCCCceEEEEEeCCCcEEEEE--ccC-CceeEEeecCCcCeEEEeeeecCCceEEEEecCC---CcEEEEecCCC
Q 001415          470 DIAFSHPNKQLCVITCGDDKTIKVWD--ATN-GAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALD---GKIKAWLYDNL  543 (1082)
Q Consensus       470 ~l~fs~dg~~~~l~s~s~d~~i~vwd--~~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d---g~i~iwd~~~~  543 (1082)
                      ..+|||||+. ++++...++...+|.  +.. +.....+..+...+....|+|++  +.|+..+.+   ..|.+||+.++
T Consensus       285 ~p~wSPDG~~-Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG--~~Laf~~~~~g~~~I~v~dl~~g  361 (428)
T PRK01029        285 NPSFSPDGTR-LVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDG--KKIAFCSVIKGVRQICVYDLATG  361 (428)
T ss_pred             CeEECCCCCE-EEEEECCCCCceEEEEECcccccceEEeccCCCCccceeECCCC--CEEEEEEcCCCCcEEEEEECCCC
Confidence            7899999995 233334566655664  332 33445555555566677777654  666655432   36889998876


Q ss_pred             CceeeecCCCCceEEEEEccCCCeeeecccccceeEEEecCCCCEEEEEe---CCCeEEEEECCCcceEEEEecCCCCCC
Q 001415          544 GSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAG---DDFSIKFWDMDSVQLLTSIDADGGLPA  620 (1082)
Q Consensus       544 ~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~i~~~~~~~~~~~l~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~  620 (1082)
                      +.... ......+....|+|||+                     .++...   ....|++||+.+++........+   .
T Consensus       362 ~~~~L-t~~~~~~~~p~wSpDG~---------------------~L~f~~~~~g~~~L~~vdl~~g~~~~Lt~~~g---~  416 (428)
T PRK01029        362 RDYQL-TTSPENKESPSWAIDSL---------------------HLVYSAGNSNESELYLISLITKKTRKIVIGSG---E  416 (428)
T ss_pred             CeEEc-cCCCCCccceEECCCCC---------------------EEEEEECCCCCceEEEEECCCCCEEEeecCCC---c
Confidence            54332 22222344455666555                     444322   34678899998877655443322   3


Q ss_pred             cCeEEEcCC
Q 001415          621 SPRIRFNKD  629 (1082)
Q Consensus       621 i~~~~~s~d  629 (1082)
                      +...+|+|-
T Consensus       417 ~~~p~Ws~~  425 (428)
T PRK01029        417 KRFPSWGAF  425 (428)
T ss_pred             ccCceecCC
Confidence            556788774

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=99.37  E-value=4.9e-11  Score=118.01  Aligned_cols=328  Identities=15%  Similarity=0.262  Sum_probs=199.8

Q ss_pred             ecCCCCEEEEEeCCCeEEEEEC-CCcceEEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEecCCccceeecccc
Q 001415          582 FDTTKNRFLAAGDDFSIKFWDM-DSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENL  660 (1082)
Q Consensus       582 ~~~~~~~l~~~~~dg~i~iwd~-~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~  660 (1082)
                      .-|..+-+++.+.|.+++||-- +.++....+.. ....+++++.+.++...|++|-.+|++.-+.+..........   
T Consensus        32 l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~-~mP~~~~~~~y~~e~~~L~vg~~ngtvtefs~sedfnkm~~~---  107 (404)
T KOG1409|consen   32 LIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYH-YMPSPCSAMEYVSESRRLYVGQDNGTVTEFALSEDFNKMTFL---  107 (404)
T ss_pred             eccCCCCeEEccccceeeeEEeccccccCchhhh-hCCCCceEeeeeccceEEEEEEecceEEEEEhhhhhhhcchh---
Confidence            3344456899999999999953 44554444432 223468899999999999999999998776554321110000   


Q ss_pred             cccccccccccCCCCccccCCCCceeeeccCCceeEEEecccCCCCccccccccCcccccceeEEEEccCCceeeecccC
Q 001415          661 AYDASRTSENSKNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASN  740 (1082)
Q Consensus       661 ~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d  740 (1082)
                                                        +.|                  ..|...+..+.|+-....+++.+.|
T Consensus       108 ----------------------------------r~~------------------~~h~~~v~~~if~~~~e~V~s~~~d  135 (404)
T KOG1409|consen  108 ----------------------------------KDY------------------LAHQARVSAIVFSLTHEWVLSTGKD  135 (404)
T ss_pred             ----------------------------------hhh------------------hhhhcceeeEEecCCceeEEEeccc
Confidence                                              000                  1177788888888888888888888


Q ss_pred             CeEEEeeccccccCCCCCcccccCccccCCCCcceeecccCCCCCCCCccEEEeecCCCeEEEee-CCeEEEEe--cCCC
Q 001415          741 AIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFN--MMTF  817 (1082)
Q Consensus       741 ~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~l~~~s-dg~i~iwd--~~~~  817 (1082)
                      ..+. |.....     +..+.           +...         .....++.+.-.  +...|. .|.|..-.  ....
T Consensus       136 k~~~-~hc~e~-----~~~lg-----------~Y~~---------~~~~t~~~~d~~--~~fvGd~~gqvt~lr~~~~~~  187 (404)
T KOG1409|consen  136 KQFA-WHCTES-----GNRLG-----------GYNF---------ETPASALQFDAL--YAFVGDHSGQITMLKLEQNGC  187 (404)
T ss_pred             cceE-EEeecc-----CCccc-----------ceEe---------eccCCCCceeeE--EEEecccccceEEEEEeecCC
Confidence            6654 322110     00000           0000         011111111111  233332 24444433  3456


Q ss_pred             eeEEEECCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEeccccee-eeeecccccCEEEEEEeCCCCEEEEEeCCCcEEE
Q 001415          818 KTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEV-KSKLKGHSKRITGLAFSHALNVLVSSGADSQLCV  896 (1082)
Q Consensus       818 ~~~~~~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~-~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~v  896 (1082)
                      ..+.++.+|.+.+++++|.| ..++|.+|..|..|.+||+...+- ...+.+|...|..+...+--+.|++++.||.|.+
T Consensus       188 ~~i~~~~~h~~~~~~l~Wd~-~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~  266 (404)
T KOG1409|consen  188 QLITTFNGHTGEVTCLKWDP-GQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHTRQLISCGEDGGIVV  266 (404)
T ss_pred             ceEEEEcCcccceEEEEEcC-CCcEEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhhhhheeeeeccCCCeEEE
Confidence            77889999999999999999 889999999999999999986543 4678899999999998888899999999999999


Q ss_pred             EEcCCcccccceeee-------------------------ccCCCCCCC-CCCcEEEEcCCCcEEEEEecCeEEEEEccC
Q 001415          897 WSSDGWEKQKNRFLQ-------------------------IPTGRTPTA-QSDTRVQFHQDQIHFLVVHETQLAIFETTK  950 (1082)
Q Consensus       897 wd~~~~~~~~~~~~~-------------------------~~~~~~~~~-~~v~~~~fspdg~~l~~~~d~~i~iwd~~~  950 (1082)
                      |+.+.........+.                         ....|-... ..+...+-+....+...+.+-.+++.|.-.
T Consensus       267 w~mn~~r~etpewl~s~~cQ~c~qpffwn~~~m~~~k~~glr~h~crkcg~avc~~c~s~~~~~p~mg~e~~vR~~~~c~  346 (404)
T KOG1409|consen  267 WNMNVKRVETPEWLDSDSCQKCNQPFFWNFRQMWDRKQLGLRQHHCRKCGKAVCGKCSSNRSSYPTMGFEFSVRVCDSCY  346 (404)
T ss_pred             EeccceeecCccccccchhhhhCchHHHHHHHHHhhhhhhhhhhhhhhhhhhcCcccccCccccccccceeEEEEecccc
Confidence            999864322211100                         000000000 111111112222222224444555554311


Q ss_pred             c-----ceeeeeccCCCCcceeEEEEcCCCceEEEeecCCcEEEEecCC
Q 001415          951 L-----ECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAAN  994 (1082)
Q Consensus       951 ~-----~~~~~~~~~~h~~~i~~l~~s~dg~~l~t~s~dg~v~vwd~~~  994 (1082)
                      .     .......++.-...|+++.+-.+-.+|+|++.|..|+|||+..
T Consensus       347 ~~i~~~~~t~LA~phei~tgItamhlqetlglLvTsG~~Rvi~iwd~~~  395 (404)
T KOG1409|consen  347 PTIKDEERTPLAIPHEIKTGITAMHLQETLGLLVTSGTDRVIKIWDVRS  395 (404)
T ss_pred             hhhhcCCCCccccccccccceeEEEhhhhccceeecCCceEEEEEechh
Confidence            1     1100111112245799999998989999999999999999863

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.36  E-value=7.8e-11  Score=118.83  Aligned_cols=257  Identities=12%  Similarity=0.097  Sum_probs=176.9

Q ss_pred             cCCCCCceEEEEecCCCeEEEEEc-CCCcEEEEEccccceeeeeceeeeccCCCCcccccccccCCCCceeEEEEecCCC
Q 001415          355 LNQGSSPMSMDFHPVQQTLLLVGT-NVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGS  433 (1082)
Q Consensus       355 ~~h~~~v~~~~~spdg~~llasgs-~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~  433 (1082)
                      +.....|..++|--|++.=+..+. .|..+.............    +|+..         .....++.|..++..  ..
T Consensus        52 ~~~~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~----~~~~~---------~~~l~~~~I~gl~~~--dg  116 (412)
T KOG3881|consen   52 VDELDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSS----LDDAK---------TVSLGTKSIKGLKLA--DG  116 (412)
T ss_pred             cchhhhhhhheeecCCceeEeeccccCcccccccccCCccccc----ccccc---------ccccccccccchhhc--CC
Confidence            345678888999888765444444 555666666555444332    12221         234445667666653  33


Q ss_pred             eEEEEeCCCeEEEEEccCCceee-EEEEeeccccCeeEEEecCCCCceEEEEEeCC--CcEEEEEccCCceeEEeecC--
Q 001415          434 LFGVAYSRHIVQIYSYHGGDEVR-QHLEIDAHVGGVNDIAFSHPNKQLCVITCGDD--KTIKVWDATNGAKQYIFEGH--  508 (1082)
Q Consensus       434 ~las~~~d~~v~iwd~~~~~~~~-~~~~~~~h~~~V~~l~fs~dg~~~~l~s~s~d--~~i~vwd~~~~~~~~~~~~h--  508 (1082)
                      .|.+|-.+|.+.+|..+.+..-. ....+..+ .++..|.-++.... ++++||..  ..+.+||+++.+.+.+-+.-  
T Consensus       117 ~Litc~~sG~l~~~~~k~~d~hss~l~~la~g-~g~~~~r~~~~~p~-Iva~GGke~~n~lkiwdle~~~qiw~aKNvpn  194 (412)
T KOG3881|consen  117 TLITCVSSGNLQVRHDKSGDLHSSKLIKLATG-PGLYDVRQTDTDPY-IVATGGKENINELKIWDLEQSKQIWSAKNVPN  194 (412)
T ss_pred             EEEEEecCCcEEEEeccCCccccccceeeecC-CceeeeccCCCCCc-eEecCchhcccceeeeecccceeeeeccCCCC
Confidence            67777889999999998543111 11123333 56777777777775 67779988  88999999988666543321  


Q ss_pred             -----C--cCeEEEeeeecCCceEEEEecCCCcEEEEecCCCCceeeecCCCCceEEEEEccCCCeeeecccccceeEEE
Q 001415          509 -----E--APVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQ  581 (1082)
Q Consensus       509 -----~--~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~i~~~~  581 (1082)
                           .  -.++++.|.+..+...+++++.-+.+++||.+.++.         +|.++.|.           ...+.++.
T Consensus       195 D~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRR---------PV~~fd~~-----------E~~is~~~  254 (412)
T KOG3881|consen  195 DRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRR---------PVAQFDFL-----------ENPISSTG  254 (412)
T ss_pred             ccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCc---------ceeEeccc-----------cCcceeee
Confidence                 1  234566676664468999999999999999985443         23333332           12455566


Q ss_pred             ecCCCCEEEEEeCCCeEEEEECCCcceEEE-EecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEecCC
Q 001415          582 FDTTKNRFLAAGDDFSIKFWDMDSVQLLTS-IDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG  650 (1082)
Q Consensus       582 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~-~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~iwd~~~~  650 (1082)
                      ..|+++++++|..-|.+..+|+++++.... +.+..+  .|+++..+|.+++|++++-|..+||+|+.+.
T Consensus       255 l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tG--sirsih~hp~~~~las~GLDRyvRIhD~ktr  322 (412)
T KOG3881|consen  255 LTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITG--SIRSIHCHPTHPVLASCGLDRYVRIHDIKTR  322 (412)
T ss_pred             ecCCCcEEEEecccchhheecccCceeeccccCCccC--CcceEEEcCCCceEEeeccceeEEEeecccc
Confidence            666667899999999999999999988776 554444  7999999999999999999999999999885

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=99.36  E-value=3.5e-09  Score=112.27  Aligned_cols=205  Identities=12%  Similarity=0.096  Sum_probs=124.6

Q ss_pred             cEEEeecCCCeEEEee---CCeEEEEecCCCeeEEEECCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEeccc-ceee--
Q 001415          790 PCFALSKNDSYVMSAS---GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRV-DEVK--  863 (1082)
Q Consensus       790 ~~l~~s~dg~~l~~~s---dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~-~~~~--  863 (1082)
                      ..++++|||+++.+..   +..|.+.|+.+++.+..+.... ...-...++ +..++  -+.||......+.+ |+..  
T Consensus       108 ~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~-~~~vy~t~e-~~~~~--~~~Dg~~~~v~~d~~g~~~~~  183 (352)
T TIGR02658       108 WMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPD-CYHIFPTAN-DTFFM--HCRDGSLAKVGYGTKGNPKIK  183 (352)
T ss_pred             ceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCC-CcEEEEecC-CccEE--EeecCceEEEEecCCCceEEe
Confidence            3567778888777664   4678888888888877766422 122222222 22111  12344333322221 1100  


Q ss_pred             --eeecccccCE-EEEEEeC-CCCEEEEEeCCCcEEEEEcCCcccccceeeeccCCCC----CCCCCCcEEEEcCCCcEE
Q 001415          864 --SKLKGHSKRI-TGLAFSH-ALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRT----PTAQSDTRVQFHQDQIHF  935 (1082)
Q Consensus       864 --~~l~~h~~~V-~~l~~s~-d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~----~~~~~v~~~~fspdg~~l  935 (1082)
                        ..+.+-..++ ..-.|++ ||+++..... |+|.+-|+...+..............    -..+...-++++||++.+
T Consensus       184 ~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~l  262 (352)
T TIGR02658       184 PTEVFHPEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRI  262 (352)
T ss_pred             eeeeecCCccccccCCceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEE
Confidence              1111100000 0004466 8887776665 99999997664433333332221110    011444559999999988


Q ss_pred             EEEe---c--------CeEEEEEccCcceeeeeccCCCCcceeEEEEcCCCc-eEEEee-cCCcEEEEecCCceeeeeeC
Q 001415          936 LVVH---E--------TQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQ-LVYACF-LDATVCVFSAANLKLRCRIN 1002 (1082)
Q Consensus       936 ~~~~---d--------~~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~dg~-~l~t~s-~dg~v~vwd~~~~~~~~~~~ 1002 (1082)
                      .+..   .        +.|.++|..+++.+..+..   ...+..+++||||+ +|++.+ .++.|.|+|..+++.+..+.
T Consensus       263 yV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~v---G~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i~  339 (352)
T TIGR02658       263 YLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIEL---GHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELSSVN  339 (352)
T ss_pred             EEEecCCccccccCCCCEEEEEECCCCeEEEEEeC---CCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEeeec
Confidence            8732   1        5799999999999998876   35889999999999 888776 57889999999999998873

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.35  E-value=9.3e-11  Score=118.31  Aligned_cols=117  Identities=15%  Similarity=0.189  Sum_probs=103.5

Q ss_pred             CCccEEEeecC--CCeEEEeeC-CeEEEEecCCC-eeEEEECCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEeccccee
Q 001415          787 EAVPCFALSKN--DSYVMSASG-GKISLFNMMTF-KTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEV  862 (1082)
Q Consensus       787 ~~i~~l~~s~d--g~~l~~~sd-g~i~iwd~~~~-~~~~~~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~  862 (1082)
                      -+++++.|-+.  ...+|++.. +.+++||...+ +++..+.-....++++...| +++++++|..-|.+..||+++++.
T Consensus       203 vW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p-~gn~Iy~gn~~g~l~~FD~r~~kl  281 (412)
T KOG3881|consen  203 VWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTP-SGNFIYTGNTKGQLAKFDLRGGKL  281 (412)
T ss_pred             eeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecC-CCcEEEEecccchhheecccCcee
Confidence            34567777776  778888875 99999999865 56777887788999999999 999999999999999999999998


Q ss_pred             eee-ecccccCEEEEEEeCCCCEEEEEeCCCcEEEEEcCCccc
Q 001415          863 KSK-LKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEK  904 (1082)
Q Consensus       863 ~~~-l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~  904 (1082)
                      ... +++-.+.|++|..+|.+++|+++|-|..|||+|+++.+.
T Consensus       282 ~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkl  324 (412)
T KOG3881|consen  282 LGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKL  324 (412)
T ss_pred             eccccCCccCCcceEEEcCCCceEEeeccceeEEEeecccchh
Confidence            877 899999999999999999999999999999999999544

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=99.35  E-value=4.1e-09  Score=106.54  Aligned_cols=281  Identities=10%  Similarity=0.112  Sum_probs=180.7

Q ss_pred             CCceeEEEecccCCCCccccccccCcccccceeEEEEccCCceeeecccC---CeEEEeeccccccCCCCCcccccCccc
Q 001415          691 NDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASN---AIHLLWKWQRTERNSSGKATASVAPQL  767 (1082)
Q Consensus       691 d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d---~~i~iw~~~~~~~~~~~~~~~~~~~~~  767 (1082)
                      +..|.+|++.+...  .+..+.+-.  ....++-++|+++++.|.++..+   |.+.-|.+                   
T Consensus        15 s~gI~v~~ld~~~g--~l~~~~~v~--~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~i-------------------   71 (346)
T COG2706          15 SQGIYVFNLDTKTG--ELSLLQLVA--ELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRI-------------------   71 (346)
T ss_pred             CCceEEEEEeCccc--ccchhhhcc--ccCCCceEEECCCCCEEEEEEecCCcCcEEEEEE-------------------
Confidence            46799999984322  122211111  56678889999999988877665   56666654                   


Q ss_pred             cCCCCcceeecccCCCCCCCCccEEEeecCCCeEEEee--CCeEEEEecCC-CeeEEE--ECCCCCC----------eeE
Q 001415          768 WQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS--GGKISLFNMMT-FKTMAT--FMPPPPA----------ATF  832 (1082)
Q Consensus       768 ~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~l~~~s--dg~i~iwd~~~-~~~~~~--~~~~~~~----------v~~  832 (1082)
                       |..+|.+....... ....+...++++++|++++++.  .|.|.++-+.. |.....  ...|.+.          +..
T Consensus        72 -D~~~G~Lt~ln~~~-~~g~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~  149 (346)
T COG2706          72 -DPDDGRLTFLNRQT-LPGSPPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHS  149 (346)
T ss_pred             -cCCCCeEEEeeccc-cCCCCCeEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccce
Confidence             33334322211000 0233447899999999999997  58899999864 332211  2223333          788


Q ss_pred             EEEecCCCcEEEEEeC-CCcEEEEecccceeee----eecccccCEEEEEEeCCCCEEEEEe-CCCcEEEEEcCCc--cc
Q 001415          833 LAFHPQDNNIIAIGMD-DSSIQIYNVRVDEVKS----KLKGHSKRITGLAFSHALNVLVSSG-ADSQLCVWSSDGW--EK  904 (1082)
Q Consensus       833 l~~sp~~~~~lasg~~-dg~v~iwd~~~~~~~~----~l~~h~~~V~~l~~s~d~~~l~s~s-~Dg~i~vwd~~~~--~~  904 (1082)
                      ..+.| ++++|++.+- --.|.+|++..|++..    .++ ....-..|.|+|++++..... -+++|.+|..+..  +.
T Consensus       150 a~~tP-~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~-~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~  227 (346)
T COG2706         150 ANFTP-DGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVK-PGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKF  227 (346)
T ss_pred             eeeCC-CCCEEEEeecCCceEEEEEcccCccccccccccC-CCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceE
Confidence            99999 8888877653 2379999999776432    222 233457899999999977665 5899999999883  33


Q ss_pred             ccceeeeccCCCCCCCCCCcEEEEcCCCcEEEEEec--CeEEEEEccC--cceeeeeccCCCCcceeEEEEcCCCceEEE
Q 001415          905 QKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHE--TQLAIFETTK--LECVKQWVPRESSAPITHATFSCDSQLVYA  980 (1082)
Q Consensus       905 ~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~~d--~~i~iwd~~~--~~~~~~~~~~~h~~~i~~l~~s~dg~~l~t  980 (1082)
                      ...+.+...............|..++||++|.++..  ..|.+|.++.  +++...-...-+........|+++|++|++
T Consensus       228 ~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Lia  307 (346)
T COG2706         228 EELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIA  307 (346)
T ss_pred             EEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEE
Confidence            332333222222223356788999999999999754  3688887653  332221111233445788999999999999


Q ss_pred             eecC-CcEEEEecC--Cceee
Q 001415          981 CFLD-ATVCVFSAA--NLKLR  998 (1082)
Q Consensus       981 ~s~d-g~v~vwd~~--~~~~~  998 (1082)
                      +.++ ..|.||..+  +|++-
T Consensus       308 a~q~sd~i~vf~~d~~TG~L~  328 (346)
T COG2706         308 ANQKSDNITVFERDKETGRLT  328 (346)
T ss_pred             EccCCCcEEEEEEcCCCceEE
Confidence            9866 458888765  55544

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=99.33  E-value=2.9e-08  Score=102.67  Aligned_cols=171  Identities=15%  Similarity=0.170  Sum_probs=133.0

Q ss_pred             CCCeEEEeeCCeEEEEecCCCeeEEEECCCCCCeeEEEEecCCCcEEEEEeCCC-cEEEEecccceeeeeecccccCEEE
Q 001415          797 NDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDS-SIQIYNVRVDEVKSKLKGHSKRITG  875 (1082)
Q Consensus       797 dg~~l~~~sdg~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasg~~dg-~v~iwd~~~~~~~~~l~~h~~~V~~  875 (1082)
                      +|.+++..+.|+..|.+...+-.++.  ++.+.|.-..+.. ++.-++.|..|| .+-|||..+++. ..+...-+.|.+
T Consensus       331 ~Gd~ia~VSRGkaFi~~~~~~~~iqv--~~~~~VrY~r~~~-~~e~~vigt~dgD~l~iyd~~~~e~-kr~e~~lg~I~a  406 (668)
T COG4946         331 NGDYIALVSRGKAFIMRPWDGYSIQV--GKKGGVRYRRIQV-DPEGDVIGTNDGDKLGIYDKDGGEV-KRIEKDLGNIEA  406 (668)
T ss_pred             CCcEEEEEecCcEEEECCCCCeeEEc--CCCCceEEEEEcc-CCcceEEeccCCceEEEEecCCceE-EEeeCCccceEE
Confidence            78899999999988888765544433  4666788888888 677888999999 999999998875 455667788999


Q ss_pred             EEEeCCCCEEEEEeCCCcEEEEEcCCcccccceeeeccCCCCCCCCCCcEEEEcCCCcEEEEEe-----cCeEEEEEccC
Q 001415          876 LAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVH-----ETQLAIFETTK  950 (1082)
Q Consensus       876 l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~~-----d~~i~iwd~~~  950 (1082)
                      +..++||++++.+.....|.+.|++++..   +.+...+  .   +-|+.++|+|+++++|.+.     ...|++||+.+
T Consensus       407 v~vs~dGK~~vvaNdr~el~vididngnv---~~idkS~--~---~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~  478 (668)
T COG4946         407 VKVSPDGKKVVVANDRFELWVIDIDNGNV---RLIDKSE--Y---GLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDG  478 (668)
T ss_pred             EEEcCCCcEEEEEcCceEEEEEEecCCCe---eEecccc--c---ceeEEEEEcCCceeEEEecCcceeeeeEEEEecCC
Confidence            99999999999998888999999999753   2222211  1   5689999999999999863     34799999999


Q ss_pred             cceeeeeccCCCCcceeEEEEcCCCceEEEee
Q 001415          951 LECVKQWVPRESSAPITHATFSCDSQLVYACF  982 (1082)
Q Consensus       951 ~~~~~~~~~~~h~~~i~~l~~s~dg~~l~t~s  982 (1082)
                      ++....-.+.+|   =.+-+|.|||++|..-+
T Consensus       479 ~Kiy~vTT~ta~---DfsPaFD~d~ryLYfLs  507 (668)
T COG4946         479 GKIYDVTTPTAY---DFSPAFDPDGRYLYFLS  507 (668)
T ss_pred             CeEEEecCCccc---ccCcccCCCCcEEEEEe
Confidence            888766554333   23458999999887655

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.31  E-value=1.2e-10  Score=115.08  Aligned_cols=112  Identities=20%  Similarity=0.327  Sum_probs=91.1

Q ss_pred             CCCCccEEEeecCCCeEEEee---CCeEEEEecCCCeeEEEECCCCCCeeEEEEecCCCcEEEEEeC---CCcEEEEecc
Q 001415          785 PEEAVPCFALSKNDSYVMSAS---GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMD---DSSIQIYNVR  858 (1082)
Q Consensus       785 ~~~~i~~l~~s~dg~~l~~~s---dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasg~~---dg~v~iwd~~  858 (1082)
                      ...+|.+++|+|+|+.+|+..   +..|.+||++ ++.+..+.  ...+..+.|+| +|++|++|+.   .|.|.+||+.
T Consensus        58 ~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~-~~~i~~~~--~~~~n~i~wsP-~G~~l~~~g~~n~~G~l~~wd~~  133 (194)
T PF08662_consen   58 KEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVK-GKKIFSFG--TQPRNTISWSP-DGRFLVLAGFGNLNGDLEFWDVR  133 (194)
T ss_pred             CCCceEEEEECcCCCEEEEEEccCCcccEEEcCc-ccEeEeec--CCCceEEEECC-CCCEEEEEEccCCCcEEEEEECC
Confidence            345699999999999877653   4689999996 56666664  45778999999 8999998874   4679999999


Q ss_pred             cceeeeeecccccCEEEEEEeCCCCEEEEEeC------CCcEEEEEcCCc
Q 001415          859 VDEVKSKLKGHSKRITGLAFSHALNVLVSSGA------DSQLCVWSSDGW  902 (1082)
Q Consensus       859 ~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~------Dg~i~vwd~~~~  902 (1082)
                      +.+.+.... |. .++.++|+|||++|++++.      |..++||+..+.
T Consensus       134 ~~~~i~~~~-~~-~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~G~  181 (194)
T PF08662_consen  134 KKKKISTFE-HS-DATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQGR  181 (194)
T ss_pred             CCEEeeccc-cC-cEEEEEEcCCCCEEEEEEeccceeccccEEEEEecCe
Confidence            888887765 33 4789999999999999874      788999999764

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=99.31  E-value=1.7e-09  Score=113.84  Aligned_cols=322  Identities=11%  Similarity=0.165  Sum_probs=203.1

Q ss_pred             eeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEEecCCCCCCcCeEEEcCCCCEEEEEECC-----------CcEEEE
Q 001415          577 LGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTND-----------NGIKIL  645 (1082)
Q Consensus       577 i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~d-----------g~i~iw  645 (1082)
                      -+.+.|+|.|.+|++--..| |.+|--.+...++.+...    .|.-+.|||+.+||++-+..           ..+.||
T Consensus       213 etyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~RF~Hp----~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IW  287 (698)
T KOG2314|consen  213 ETYVRWSPKGTYLVTFHKQG-IALWGGESFDRIQRFYHP----GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIW  287 (698)
T ss_pred             eeeEEecCCceEEEEEeccc-eeeecCccHHHHHhccCC----CceeeecCCccceEEEecCCccccCcccCCCceEEEE
Confidence            34566677777888877665 789977766666666432    47889999999999986532           345666


Q ss_pred             EecCCccceeecccccccccccccccCCCCccccCCCCceeeeccCCceeEEEecccCCCCccccccccCcccccceeEE
Q 001415          646 ATSDGIRLLRTFENLAYDASRTSENSKNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRL  725 (1082)
Q Consensus       646 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~  725 (1082)
                      |+.+| ...+.+.                                                   .+.-    ....-.-+
T Consensus       288 DI~tG-~lkrsF~---------------------------------------------------~~~~----~~~~WP~f  311 (698)
T KOG2314|consen  288 DIATG-LLKRSFP---------------------------------------------------VIKS----PYLKWPIF  311 (698)
T ss_pred             Ecccc-chhccee---------------------------------------------------ccCC----CccccceE
Confidence            66666 2222221                                                   1100    01111236


Q ss_pred             EEccCCceeeecccCCeEEEeeccccccCCCCCcccccCccccCCCCcceeecccCCCCCCCCccEEEeecCCCeEEEee
Q 001415          726 IFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS  805 (1082)
Q Consensus       726 ~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~l~~~s  805 (1082)
                      .||.|+++++....+ .|.||+...              ..+.|.++   +        .-..|..+.|+|.+.+||.-.
T Consensus       312 rWS~DdKy~Arm~~~-sisIyEtps--------------f~lld~Ks---l--------ki~gIr~FswsP~~~llAYwt  365 (698)
T KOG2314|consen  312 RWSHDDKYFARMTGN-SISIYETPS--------------FMLLDKKS---L--------KISGIRDFSWSPTSNLLAYWT  365 (698)
T ss_pred             EeccCCceeEEeccc-eEEEEecCc--------------eeeecccc---c--------CCccccCcccCCCcceEEEEc
Confidence            799999988877775 677775432              11112111   1        345688899999999998764


Q ss_pred             ---C---CeEEEEecCCCeeEEEECCCCCCeeEEEEecCCCcEEEEEe----------CCCcEEEEecccceeeeeeccc
Q 001415          806 ---G---GKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGM----------DDSSIQIYNVRVDEVKSKLKGH  869 (1082)
Q Consensus       806 ---d---g~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasg~----------~dg~v~iwd~~~~~~~~~l~~h  869 (1082)
                         +   ..+.+..+.+++.+++..-+.-.=..+-|-. .|.+|+.--          .-..+.|+.+.....-...-.-
T Consensus       366 pe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk-~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~vel  444 (698)
T KOG2314|consen  366 PETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQK-SGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVEL  444 (698)
T ss_pred             ccccCCcceEEEEecCccceeeeccceeeeccEEEecc-CCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceeeec
Confidence               1   3588888888888877665554444566766 677776432          1124555655544322222234


Q ss_pred             ccCEEEEEEeCCCCEEEEEeCC---CcEEEEEcCCcccccceeeeccCCCCCCCCCCcEEEEcCCCcEEEEE----ecCe
Q 001415          870 SKRITGLAFSHALNVLVSSGAD---SQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV----HETQ  942 (1082)
Q Consensus       870 ~~~V~~l~~s~d~~~l~s~s~D---g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~----~d~~  942 (1082)
                      ...|...+|-|.|..+++-+..   .++.+|.+++.. ....++.....     .....+.|+|.|++++++    ..|.
T Consensus       445 ke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~-~~~~lVk~~dk-----~~~N~vfwsPkG~fvvva~l~s~~g~  518 (698)
T KOG2314|consen  445 KESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNI-KKPSLVKELDK-----KFANTVFWSPKGRFVVVAALVSRRGD  518 (698)
T ss_pred             chheeeeeeccCCCeEEEEEccccccceeEEEeecCC-Cchhhhhhhcc-----cccceEEEcCCCcEEEEEEecccccc
Confidence            5778999999999988776543   579999998522 12222222222     234789999999999883    4678


Q ss_pred             EEEEEccCcceeeeeccCCCCcceeEEEEcCCCceEEEeec------CCcEEEEecCC
Q 001415          943 LAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFL------DATVCVFSAAN  994 (1082)
Q Consensus       943 i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~dg~~l~t~s~------dg~v~vwd~~~  994 (1082)
                      +..+|.+-..+...-.+ .| ...+.+.|.|.|+|++|++.      |.--++|++..
T Consensus       519 l~F~D~~~a~~k~~~~~-eh-~~at~veWDPtGRYvvT~ss~wrhk~d~GYri~tfqG  574 (698)
T KOG2314|consen  519 LEFYDTDYADLKDTASP-EH-FAATEVEWDPTGRYVVTSSSSWRHKVDNGYRIFTFQG  574 (698)
T ss_pred             eEEEecchhhhhhccCc-cc-cccccceECCCCCEEEEeeehhhhccccceEEEEeec
Confidence            99999875343332221 22 35678899999999999985      33455666653

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.30  E-value=3.3e-10  Score=128.54  Aligned_cols=222  Identities=12%  Similarity=0.048  Sum_probs=129.1

Q ss_pred             eecCCCCCceEEEEecCCCeEEEEEcCCC--cEEEEEccccceeeeeceeeeccCCCCcccccccccCCCCceeEEEEec
Q 001415          353 RTLNQGSSPMSMDFHPVQQTLLLVGTNVG--DIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP  430 (1082)
Q Consensus       353 ~~~~h~~~v~~~~~spdg~~llasgs~dg--~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~sp  430 (1082)
                      .++.+...+.+..|||||++++.+...++  .|.+||+.+++...                    +....+.....+|||
T Consensus       212 ~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~--------------------lt~~~g~~~~~~wSP  271 (448)
T PRK04792        212 MLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK--------------------VTSFPGINGAPRFSP  271 (448)
T ss_pred             EeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE--------------------ecCCCCCcCCeeECC
Confidence            45567788999999999998555554444  58888988876533                    111122345689999


Q ss_pred             CCCeEEEE-eCCCe--EEEEEccCCceeeEEEEeeccccCeeEEEecCCCCceEEEEEeCCCc--EEEEEccCCceeEEe
Q 001415          431 DGSLFGVA-YSRHI--VQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKT--IKVWDATNGAKQYIF  505 (1082)
Q Consensus       431 dg~~las~-~~d~~--v~iwd~~~~~~~~~~~~~~~h~~~V~~l~fs~dg~~~~l~s~s~d~~--i~vwd~~~~~~~~~~  505 (1082)
                      ||+.||.. +.++.  |.+||+.+++..    .+..+...+...+|+|||+. ++++...++.  |.++|+.+++... +
T Consensus       272 DG~~La~~~~~~g~~~Iy~~dl~tg~~~----~lt~~~~~~~~p~wSpDG~~-I~f~s~~~g~~~Iy~~dl~~g~~~~-L  345 (448)
T PRK04792        272 DGKKLALVLSKDGQPEIYVVDIATKALT----RITRHRAIDTEPSWHPDGKS-LIFTSERGGKPQIYRVNLASGKVSR-L  345 (448)
T ss_pred             CCCEEEEEEeCCCCeEEEEEECCCCCeE----ECccCCCCccceEECCCCCE-EEEEECCCCCceEEEEECCCCCEEE-E
Confidence            99988864 55564  777788877543    34455566778999999995 3344444444  6666777776543 3


Q ss_pred             ecCCcCeEEEeeeecCCceEEEEecC-CCc--EEEEecCCCCceeeecCCCCceEEEEEccCCCeeeecccccceeEEEe
Q 001415          506 EGHEAPVYSVCPHHKENIQFIFSTAL-DGK--IKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQF  582 (1082)
Q Consensus       506 ~~h~~~v~~~~~~~~~~~~~l~s~~~-dg~--i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~i~~~~~  582 (1082)
                      ..........+|+++  |++|+..+. ++.  |.++|+.++.... +... .......|+                    
T Consensus       346 t~~g~~~~~~~~SpD--G~~l~~~~~~~g~~~I~~~dl~~g~~~~-lt~~-~~d~~ps~s--------------------  401 (448)
T PRK04792        346 TFEGEQNLGGSITPD--GRSMIMVNRTNGKFNIARQDLETGAMQV-LTST-RLDESPSVA--------------------  401 (448)
T ss_pred             ecCCCCCcCeeECCC--CCEEEEEEecCCceEEEEEECCCCCeEE-ccCC-CCCCCceEC--------------------
Confidence            222222334566554  456655543 444  4445665543322 1111 111122444                    


Q ss_pred             cCCCCEEEEEe-CCC--eEEEEECCCcceEEEEecCCCCCCcCeEEEcC
Q 001415          583 DTTKNRFLAAG-DDF--SIKFWDMDSVQLLTSIDADGGLPASPRIRFNK  628 (1082)
Q Consensus       583 ~~~~~~l~~~~-~dg--~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~  628 (1082)
                       |+|+.++..+ .++  .+++++. +|.....+.....  .+...+|+|
T Consensus       402 -pdG~~I~~~~~~~g~~~l~~~~~-~G~~~~~l~~~~g--~~~~p~Wsp  446 (448)
T PRK04792        402 -PNGTMVIYSTTYQGKQVLAAVSI-DGRFKARLPAGQG--EVKSPAWSP  446 (448)
T ss_pred             -CCCCEEEEEEecCCceEEEEEEC-CCCceEECcCCCC--CcCCCccCC
Confidence             4444555443 333  4777776 4555555544322  456677776

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=99.30  E-value=9.1e-09  Score=104.06  Aligned_cols=259  Identities=12%  Similarity=0.194  Sum_probs=174.1

Q ss_pred             CCCCccEEEeecCCCeEEEee----CCeEEEEecCC--CeeEE--EECCCCCCeeEEEEecCCCcEEEEEeC-CCcEEEE
Q 001415          785 PEEAVPCFALSKNDSYVMSAS----GGKISLFNMMT--FKTMA--TFMPPPPAATFLAFHPQDNNIIAIGMD-DSSIQIY  855 (1082)
Q Consensus       785 ~~~~i~~l~~s~dg~~l~~~s----dg~i~iwd~~~--~~~~~--~~~~~~~~v~~l~~sp~~~~~lasg~~-dg~v~iw  855 (1082)
                      ....++-++++|+++.|.++.    +|.|..|.++.  |+...  .........+.+++++ ++++++++.. -|.|.++
T Consensus        38 ~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~-~g~~vf~AnY~~g~v~v~  116 (346)
T COG2706          38 ELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDE-DGRFVFVANYHSGSVSVY  116 (346)
T ss_pred             ccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECC-CCCEEEEEEccCceEEEE
Confidence            566778899999999888874    36677777764  44432  2222333458899999 8888887765 5799999


Q ss_pred             eccc-ceeee--eecccccC----------EEEEEEeCCCCEEEEEe--CCCcEEEEEcCCcccccceeeeccCCCCCCC
Q 001415          856 NVRV-DEVKS--KLKGHSKR----------ITGLAFSHALNVLVSSG--ADSQLCVWSSDGWEKQKNRFLQIPTGRTPTA  920 (1082)
Q Consensus       856 d~~~-~~~~~--~l~~h~~~----------V~~l~~s~d~~~l~s~s--~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~  920 (1082)
                      -++. |.+..  .+..|.+.          +.+..|.|++++|++.+  .|. |.+|+++.+............|     
T Consensus       117 p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dr-i~~y~~~dg~L~~~~~~~v~~G-----  190 (346)
T COG2706         117 PLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDR-IFLYDLDDGKLTPADPAEVKPG-----  190 (346)
T ss_pred             EcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCce-EEEEEcccCccccccccccCCC-----
Confidence            9865 43221  22235554          88899999999999885  344 9999999876655444444333     


Q ss_pred             CCCcEEEEcCCCcEEEEE--ecCeEEEEEccCc-ceeeeec------cC-CCCcceeEEEEcCCCceEEEeec-CCcEEE
Q 001415          921 QSDTRVQFHQDQIHFLVV--HETQLAIFETTKL-ECVKQWV------PR-ESSAPITHATFSCDSQLVYACFL-DATVCV  989 (1082)
Q Consensus       921 ~~v~~~~fspdg~~l~~~--~d~~i~iwd~~~~-~~~~~~~------~~-~h~~~i~~l~~s~dg~~l~t~s~-dg~v~v  989 (1082)
                      .+.+.|.|+|++++..+.  -+++|.+|..+.. ..+..+.      .+ .......+|.+++||++|.++.. ...|.+
T Consensus       191 ~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~  270 (346)
T COG2706         191 AGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAV  270 (346)
T ss_pred             CCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEE
Confidence            556999999999988774  5689999998773 2222221      11 11456778999999999998763 346888


Q ss_pred             EecCC--ceeeeeeCCCeecCCCCCCCCceeeEEEEeCCCCCeEEEEecC-CcEEEEccCCCCCccccCCCCC
Q 001415          990 FSAAN--LKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSD-GGVHVFEPLESEGKWGVPPPVD 1059 (1082)
Q Consensus       990 wd~~~--~~~~~~~~~~~~~~~gh~~~~v~~~~~~~~~~d~~~l~s~~~d-g~v~vW~~~~~~~~~~~~~~~~ 1059 (1082)
                      |.+..  +++. .+.   ..    ..+...|..+.|.+. +++|++++.+ ..|.++.+....+.+.....+.
T Consensus       271 f~V~~~~g~L~-~~~---~~----~teg~~PR~F~i~~~-g~~Liaa~q~sd~i~vf~~d~~TG~L~~~~~~~  334 (346)
T COG2706         271 FSVDPDGGKLE-LVG---IT----PTEGQFPRDFNINPS-GRFLIAANQKSDNITVFERDKETGRLTLLGRYA  334 (346)
T ss_pred             EEEcCCCCEEE-EEE---Ee----ccCCcCCccceeCCC-CCEEEEEccCCCcEEEEEEcCCCceEEeccccc
Confidence            87753  3322 222   11    122245668999994 7777777665 4788888877776666654443

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.29  E-value=7e-10  Score=126.91  Aligned_cols=165  Identities=12%  Similarity=0.054  Sum_probs=107.1

Q ss_pred             eecCCCCCceEEEEecCCCeEEEEEcCC--CcEEEEEccccceeeeeceeeeccCCCCcccccccccCCCCceeEEEEec
Q 001415          353 RTLNQGSSPMSMDFHPVQQTLLLVGTNV--GDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP  430 (1082)
Q Consensus       353 ~~~~h~~~v~~~~~spdg~~llasgs~d--g~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~sp  430 (1082)
                      .+..+...+...+|||||++|+++...+  ..|.+||+.+++...                    +....+.+...+|||
T Consensus       193 ~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~--------------------l~~~~g~~~~~~~Sp  252 (430)
T PRK00178        193 TLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ--------------------ITNFEGLNGAPAWSP  252 (430)
T ss_pred             EEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE--------------------ccCCCCCcCCeEECC
Confidence            4556788899999999999855555443  358999998876543                    222333456789999


Q ss_pred             CCCeEEEE-eCCC--eEEEEEccCCceeeEEEEeeccccCeeEEEecCCCCceEEEEEeCCC--cEEEEEccCCceeEEe
Q 001415          431 DGSLFGVA-YSRH--IVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDK--TIKVWDATNGAKQYIF  505 (1082)
Q Consensus       431 dg~~las~-~~d~--~v~iwd~~~~~~~~~~~~~~~h~~~V~~l~fs~dg~~~~l~s~s~d~--~i~vwd~~~~~~~~~~  505 (1082)
                      ||++|+.. +.++  .|.+||+.+++..    .+..+........|+|||+. ++++...++  .|.++|+.+++..+ +
T Consensus       253 DG~~la~~~~~~g~~~Iy~~d~~~~~~~----~lt~~~~~~~~~~~spDg~~-i~f~s~~~g~~~iy~~d~~~g~~~~-l  326 (430)
T PRK00178        253 DGSKLAFVLSKDGNPEIYVMDLASRQLS----RVTNHPAIDTEPFWGKDGRT-LYFTSDRGGKPQIYKVNVNGGRAER-V  326 (430)
T ss_pred             CCCEEEEEEccCCCceEEEEECCCCCeE----EcccCCCCcCCeEECCCCCE-EEEEECCCCCceEEEEECCCCCEEE-e
Confidence            99999854 3444  5888899887643    24456666778899999995 333433444  57777887776543 2


Q ss_pred             ecCCcCeEEEeeeecCCceEEEEecC-CC--cEEEEecCCCCc
Q 001415          506 EGHEAPVYSVCPHHKENIQFIFSTAL-DG--KIKAWLYDNLGS  545 (1082)
Q Consensus       506 ~~h~~~v~~~~~~~~~~~~~l~s~~~-dg--~i~iwd~~~~~~  545 (1082)
                      ...........|+++  |+.|+..+. ++  .|.+||+.++..
T Consensus       327 t~~~~~~~~~~~Spd--g~~i~~~~~~~~~~~l~~~dl~tg~~  367 (430)
T PRK00178        327 TFVGNYNARPRLSAD--GKTLVMVHRQDGNFHVAAQDLQRGSV  367 (430)
T ss_pred             ecCCCCccceEECCC--CCEEEEEEccCCceEEEEEECCCCCE
Confidence            212222334456554  456665553 33  477888876543

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=99.26  E-value=1.5e-08  Score=107.48  Aligned_cols=237  Identities=10%  Similarity=0.064  Sum_probs=150.7

Q ss_pred             eecCCCeEEEee-----------CCeEEEEecCCCeeEEEECCCCC-------CeeEEEEecCCCcEEEEEe-C-CCcEE
Q 001415          794 LSKNDSYVMSAS-----------GGKISLFNMMTFKTMATFMPPPP-------AATFLAFHPQDNNIIAIGM-D-DSSIQ  853 (1082)
Q Consensus       794 ~s~dg~~l~~~s-----------dg~i~iwd~~~~~~~~~~~~~~~-------~v~~l~~sp~~~~~lasg~-~-dg~v~  853 (1082)
                      +||||+.+.++.           ++.|.+||..+.+.+..+.....       ....++++| ||++|++.. . +..|.
T Consensus        53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~-dgk~l~V~n~~p~~~V~  131 (352)
T TIGR02658        53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTP-DNKTLLFYQFSPSPAVG  131 (352)
T ss_pred             ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECC-CCCEEEEecCCCCCEEE
Confidence            999999877664           36799999999999988874322       245799999 888887666 4 68999


Q ss_pred             EEecccceeeeeecccccCEEEEEEeCCCCEEEEEeCCCcEEEEEcCCcccccceeeeccCC-CCCCCCCCcEEEEcC-C
Q 001415          854 IYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTG-RTPTAQSDTRVQFHQ-D  931 (1082)
Q Consensus       854 iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~fsp-d  931 (1082)
                      +.|+.+++.+.++.--. ...-...+++..+  +-+.||......+.............+.+ ..+...  .- .|++ |
T Consensus       132 VvD~~~~kvv~ei~vp~-~~~vy~t~e~~~~--~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~--rP-~~~~~d  205 (352)
T TIGR02658       132 VVDLEGKAFVRMMDVPD-CYHIFPTANDTFF--MHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLIN--HP-AYSNKS  205 (352)
T ss_pred             EEECCCCcEEEEEeCCC-CcEEEEecCCccE--EEeecCceEEEEecCCCceEEeeeeeecCCcccccc--CC-ceEcCC
Confidence            99999999988876422 2222222222222  12234444443333311111111111111 000000  11 4566 9


Q ss_pred             CcEEEEEecCeEEEEEccC-----cceeeeeccCC-----CCcceeEEEEcCCCceEEEeec----------CCcEEEEe
Q 001415          932 QIHFLVVHETQLAIFETTK-----LECVKQWVPRE-----SSAPITHATFSCDSQLVYACFL----------DATVCVFS  991 (1082)
Q Consensus       932 g~~l~~~~d~~i~iwd~~~-----~~~~~~~~~~~-----h~~~i~~l~~s~dg~~l~t~s~----------dg~v~vwd  991 (1082)
                      |+++.++.+|.|.+.|+..     ...+..+....     ....+.-+++++||+.+++...          .+.|.++|
T Consensus       206 g~~~~vs~eG~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD  285 (352)
T TIGR02658       206 GRLVWPTYTGKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVD  285 (352)
T ss_pred             CcEEEEecCCeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEE
Confidence            9999998889999999533     33222221110     1233445999999999888531          25799999


Q ss_pred             cCCceeeeeeCCCeecCCCCCCCCceeeEEEEeCCCCC-eEEEEe-cCCcEEEEccCCCC
Q 001415          992 AANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPN-EFALGL-SDGGVHVFEPLESE 1049 (1082)
Q Consensus       992 ~~~~~~~~~~~~~~~~~~gh~~~~v~~~~~~~~~~d~~-~l~s~~-~dg~v~vW~~~~~~ 1049 (1082)
                      ..+++.+.++..      |     ..+..+.++| |++ +|++.. .++.|.+.|+.+++
T Consensus       286 ~~t~kvi~~i~v------G-----~~~~~iavS~-Dgkp~lyvtn~~s~~VsViD~~t~k  333 (352)
T TIGR02658       286 AKTGKRLRKIEL------G-----HEIDSINVSQ-DAKPLLYALSTGDKTLYIFDAETGK  333 (352)
T ss_pred             CCCCeEEEEEeC------C-----CceeeEEECC-CCCeEEEEeCCCCCcEEEEECcCCe
Confidence            999999998772      2     1344799999 567 766555 68899999999987

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.24  E-value=2.2e-09  Score=122.92  Aligned_cols=191  Identities=14%  Similarity=0.113  Sum_probs=122.8

Q ss_pred             ccCCCCceeEEEEecCCCeEEEEeCC---CeEEEEEccCCceeeEEEEeeccccCeeEEEecCCCCceEEEEEeCCC--c
Q 001415          416 VKDPGVSVNRVIWSPDGSLFGVAYSR---HIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDK--T  490 (1082)
Q Consensus       416 ~~~h~~~V~~l~~spdg~~las~~~d---~~v~iwd~~~~~~~~~~~~~~~h~~~V~~l~fs~dg~~~~l~s~s~d~--~  490 (1082)
                      +..+...+.+.+|||||++||.+..+   ..|.+||+.+++...    +..+.+.+.+++|+|||+. ++++.+.++  .
T Consensus       185 l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~----~~~~~~~~~~~~~spDg~~-l~~~~~~~~~~~  259 (417)
T TIGR02800       185 ITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREK----VASFPGMNGAPAFSPDGSK-LAVSLSKDGNPD  259 (417)
T ss_pred             eecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEE----eecCCCCccceEECCCCCE-EEEEECCCCCcc
Confidence            44566689999999999999988654   479999999876432    3445566778999999985 344555444  5


Q ss_pred             EEEEEccCCceeEEeecCCcCeEEEeeeecCCceEEEEecC-CC--cEEEEecCCCCceeeecCCCCceEEEEEccCCCe
Q 001415          491 IKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTAL-DG--KIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTR  567 (1082)
Q Consensus       491 i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~-dg--~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~  567 (1082)
                      |.+||+.++.. ..+..+........|++  +++.|+..+. ++  .|.++|+.+... ..+........          
T Consensus       260 i~~~d~~~~~~-~~l~~~~~~~~~~~~s~--dg~~l~~~s~~~g~~~iy~~d~~~~~~-~~l~~~~~~~~----------  325 (417)
T TIGR02800       260 IYVMDLDGKQL-TRLTNGPGIDTEPSWSP--DGKSIAFTSDRGGSPQIYMMDADGGEV-RRLTFRGGYNA----------  325 (417)
T ss_pred             EEEEECCCCCE-EECCCCCCCCCCEEECC--CCCEEEEEECCCCCceEEEEECCCCCE-EEeecCCCCcc----------
Confidence            88899887764 34444555455566765  4566665543 33  466667654332 12222222222          


Q ss_pred             eeecccccceeEEEecCCCCEEEEEeCCC---eEEEEECCCcceEEEEecCCCCCCcCeEEEcCCCCEEEEEECCC
Q 001415          568 TYQGFRKRSLGVVQFDTTKNRFLAAGDDF---SIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDN  640 (1082)
Q Consensus       568 ~~~~~~~~~i~~~~~~~~~~~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg  640 (1082)
                                 ...|+|++++++.++.++   .|.+||+.++... .+....   ......|+|||++|+..+.++
T Consensus       326 -----------~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~-~l~~~~---~~~~p~~spdg~~l~~~~~~~  386 (417)
T TIGR02800       326 -----------SPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGER-VLTDTG---LDESPSFAPNGRMILYATTRG  386 (417)
T ss_pred             -----------CeEECCCCCEEEEEEccCCceEEEEEeCCCCCeE-EccCCC---CCCCceECCCCCEEEEEEeCC
Confidence                       344555566777766654   7899998876543 332222   235578999999988877654

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=99.24  E-value=3.9e-09  Score=111.23  Aligned_cols=293  Identities=12%  Similarity=0.133  Sum_probs=183.0

Q ss_pred             ceeEEEEccCCceeeecccCCeEEEeeccccccCCCCCcccccCccccCCCCcceeecccCCCCCCCCccEEEeecCCCe
Q 001415          721 KISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSY  800 (1082)
Q Consensus       721 ~i~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~  800 (1082)
                      .|.-+.|||+.++|++-+..-...-|+-           .....+.+||+.+|...............-.-+.||.|+++
T Consensus       251 ~Vq~idfSP~EkYLVT~s~~p~~~~~~d-----------~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy  319 (698)
T KOG2314|consen  251 GVQFIDFSPNEKYLVTYSPEPIIVEEDD-----------NEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKY  319 (698)
T ss_pred             CceeeecCCccceEEEecCCccccCccc-----------CCCceEEEEEccccchhcceeccCCCccccceEEeccCCce
Confidence            3566777777777777665433322220           11123466677777655543321112223345789999999


Q ss_pred             EEEeeCCeEEEEecCCCeeEEEECCCCCCeeEEEEecCCCcEEEEEeC-----CCcEEEEecccceeeeeecccccCEEE
Q 001415          801 VMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMD-----DSSIQIYNVRVDEVKSKLKGHSKRITG  875 (1082)
Q Consensus       801 l~~~sdg~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasg~~-----dg~v~iwd~~~~~~~~~l~~h~~~V~~  875 (1082)
                      +|--..+.|.||+..+..++..-.-....|....|+| .+.+||.=..     -..+.+-.+.+++.+++-.-|.-.=..
T Consensus       320 ~Arm~~~sisIyEtpsf~lld~Kslki~gIr~FswsP-~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDck  398 (698)
T KOG2314|consen  320 FARMTGNSISIYETPSFMLLDKKSLKISGIRDFSWSP-TSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCK  398 (698)
T ss_pred             eEEeccceEEEEecCceeeecccccCCccccCcccCC-CcceEEEEcccccCCcceEEEEecCccceeeeccceeeeccE
Confidence            9988889999999887665544444456789999999 8888886442     236777788887777666555433344


Q ss_pred             EEEeCCCCEEEEEeC----------CCcEEEEEcCCcccccceeeeccCCCCCCCCCCcEEEEcCCCcEEEE--Eec--C
Q 001415          876 LAFSHALNVLVSSGA----------DSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV--VHE--T  941 (1082)
Q Consensus       876 l~~s~d~~~l~s~s~----------Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~--~~d--~  941 (1082)
                      |-|-.+|.+|+.--.          =..+.|+.+...+.. ...+.       ....|...+|-|.|..+++  +.+  .
T Consensus       399 LhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIp-ve~ve-------lke~vi~FaWEP~gdkF~vi~g~~~k~  470 (698)
T KOG2314|consen  399 LHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIP-VEVVE-------LKESVIAFAWEPHGDKFAVISGNTVKN  470 (698)
T ss_pred             EEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCC-ceeee-------cchheeeeeeccCCCeEEEEEcccccc
Confidence            677788888875311          123455655553321 11111       1246788999999998888  332  4


Q ss_pred             eEEEEEccC-c---ceeeeeccCCCCcceeEEEEcCCCceEEEee---cCCcEEEEecCCceeeeeeCCCeecCCCCCCC
Q 001415          942 QLAIFETTK-L---ECVKQWVPRESSAPITHATFSCDSQLVYACF---LDATVCVFSAANLKLRCRINPSAYLPAGVSSS 1014 (1082)
Q Consensus       942 ~i~iwd~~~-~---~~~~~~~~~~h~~~i~~l~~s~dg~~l~t~s---~dg~v~vwd~~~~~~~~~~~~~~~~~~gh~~~ 1014 (1082)
                      ++.+|.+.+ .   +.+..+.    ....+.+.|||.|++++.+.   ..|.+..+|+.-..+... .    .+. |   
T Consensus       471 tvsfY~~e~~~~~~~lVk~~d----k~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~k~~-~----~~e-h---  537 (698)
T KOG2314|consen  471 TVSFYAVETNIKKPSLVKELD----KKFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYADLKDT-A----SPE-H---  537 (698)
T ss_pred             ceeEEEeecCCCchhhhhhhc----ccccceEEEcCCCcEEEEEEecccccceEEEecchhhhhhc-c----Ccc-c---
Confidence            688998773 2   2333333    34567899999999988765   568899999885332211 1    111 1   


Q ss_pred             CceeeEEEEeCCCCCeEEEEecCC------cEEEEccCCC
Q 001415         1015 NVHPLVIAAHPQEPNEFALGLSDG------GVHVFEPLES 1048 (1082)
Q Consensus      1015 ~v~~~~~~~~~~d~~~l~s~~~dg------~v~vW~~~~~ 1048 (1082)
                       .....+-|.|. |++++++++-.      .-++|+..-.
T Consensus       538 -~~at~veWDPt-GRYvvT~ss~wrhk~d~GYri~tfqGr  575 (698)
T KOG2314|consen  538 -FAATEVEWDPT-GRYVVTSSSSWRHKVDNGYRIFTFQGR  575 (698)
T ss_pred             -cccccceECCC-CCEEEEeeehhhhccccceEEEEeecH
Confidence             23346889995 89999987654      4556665543

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.23  E-value=1.3e-09  Score=107.92  Aligned_cols=278  Identities=13%  Similarity=0.213  Sum_probs=175.0

Q ss_pred             cCCCCCceEEEEecCCCeEEEEEcCCCcEEEEEccccce---eeeeceeeeccCCCCcccccccccCCCCceeEEEEecC
Q 001415          355 LNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRER---LVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPD  431 (1082)
Q Consensus       355 ~~h~~~v~~~~~spdg~~llasgs~dg~i~iwd~~~~~~---~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spd  431 (1082)
                      +...+-|.++.|..+|.+ ||+|..+|.|.++.-.....   .....|+..+..-...     .--.-...|..+.|.++
T Consensus        22 vteadiis~vef~~~Ge~-LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYL-----kSleieEKinkIrw~~~   95 (433)
T KOG1354|consen   22 VTEADIISAVEFDHYGER-LATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYL-----KSLEIEEKINKIRWLDD   95 (433)
T ss_pred             echhcceeeEEeecccce-EeecCCCCeEEEeecccccccceeeeeeeeccCcccchh-----hhhhhhhhhhhceecCC
Confidence            445678999999999995 99999999999997543222   1111222111110000     00122357889999986


Q ss_pred             CC--eEEEEeCCCeEEEEEccCCceee--------------------------------EE-EEeeccccCeeEEEecCC
Q 001415          432 GS--LFGVAYSRHIVQIYSYHGGDEVR--------------------------------QH-LEIDAHVGGVNDIAFSHP  476 (1082)
Q Consensus       432 g~--~las~~~d~~v~iwd~~~~~~~~--------------------------------~~-~~~~~h~~~V~~l~fs~d  476 (1082)
                      +.  .+...+.|.+|++|.+.......                                +. .--.+|+--|.++.++.|
T Consensus        96 ~n~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD  175 (433)
T KOG1354|consen   96 GNLAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSD  175 (433)
T ss_pred             CCccEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCc
Confidence            64  56667799999999876432110                                00 011357778999999999


Q ss_pred             CCceEEEEEeCCCcEEEEEccCCce---eEEeecC-----CcCeEEEeeeecCCceEEEEecCCCcEEEEecCCCCcee-
Q 001415          477 NKQLCVITCGDDKTIKVWDATNGAK---QYIFEGH-----EAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRV-  547 (1082)
Q Consensus       477 g~~~~l~s~s~d~~i~vwd~~~~~~---~~~~~~h-----~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~-  547 (1082)
                      +.  .++++ +|=.|.+|+++--..   +..++.+     +.-|++..|+|... ++++-.+..|+|++.|++...... 
T Consensus       176 ~E--t~lSA-DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~c-n~f~YSSSKGtIrLcDmR~~aLCd~  251 (433)
T KOG1354|consen  176 KE--TFLSA-DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHC-NVFVYSSSKGTIRLCDMRQSALCDA  251 (433)
T ss_pred             cc--eEeec-cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHc-cEEEEecCCCcEEEeechhhhhhcc
Confidence            98  45655 577899999874322   1222222     24477888988765 578888889999999998533221 


Q ss_pred             ---eecCCCCceEEEEEccCCCeeeecccccceeEEEecCCCCEEEEEeCCCeEEEEECC-CcceEEEEecCCCC-----
Q 001415          548 ---DYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMD-SVQLLTSIDADGGL-----  618 (1082)
Q Consensus       548 ---~~~~~~~~v~~~~~s~d~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~-~~~~~~~~~~~~~~-----  618 (1082)
                         .+..+..+...         -+...--..|..+.|++.|+++++-+. -+|++||+. ..+++.++..|...     
T Consensus       252 hsKlfEepedp~~r---------sffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~vh~~lr~kLc  321 (433)
T KOG1354|consen  252 HSKLFEEPEDPSSR---------SFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPVHEYLRSKLC  321 (433)
T ss_pred             hhhhhccccCCcch---------hhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEeehHhHHHHHH
Confidence               11111111110         011111125566777777778876443 579999994 55666666544321     


Q ss_pred             --------CCcCeEEEcCCCCEEEEEECCCcEEEEEecCCcc
Q 001415          619 --------PASPRIRFNKDGCLLAVSTNDNGIKILATSDGIR  652 (1082)
Q Consensus       619 --------~~i~~~~~s~dg~~l~~~~~dg~i~iwd~~~~~~  652 (1082)
                              ..-..++|+.++.++++|+....+++++...|..
T Consensus       322 ~lYEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~~~~gsk  363 (433)
T KOG1354|consen  322 SLYENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFNLARGSK  363 (433)
T ss_pred             HHhhccchhheeEEEEcCCcceEecccccceEEEecCCCCcc
Confidence                    1113588999999999999999999999776643

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.22  E-value=1.2e-09  Score=125.02  Aligned_cols=162  Identities=17%  Similarity=0.099  Sum_probs=110.1

Q ss_pred             eecCCCCCceEEEEecCCCeEEEEEcCC--CcEEEEEccccceeeeeceeeeccCCCCcccccccccCCCCceeEEEEec
Q 001415          353 RTLNQGSSPMSMDFHPVQQTLLLVGTNV--GDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP  430 (1082)
Q Consensus       353 ~~~~h~~~v~~~~~spdg~~llasgs~d--g~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~sp  430 (1082)
                      .++.+...+...+|||||++++.+...+  ..|++||+.+++...                    +..+.+.+.+++|+|
T Consensus       184 ~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~--------------------~~~~~~~~~~~~~sp  243 (417)
T TIGR02800       184 TITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREK--------------------VASFPGMNGAPAFSP  243 (417)
T ss_pred             EeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEE--------------------eecCCCCccceEECC
Confidence            4556777899999999999755444333  479999998876543                    233455677899999


Q ss_pred             CCCeEEEE-eCCC--eEEEEEccCCceeeEEEEeeccccCeeEEEecCCCCceEEEEEe-CCC--cEEEEEccCCceeEE
Q 001415          431 DGSLFGVA-YSRH--IVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCG-DDK--TIKVWDATNGAKQYI  504 (1082)
Q Consensus       431 dg~~las~-~~d~--~v~iwd~~~~~~~~~~~~~~~h~~~V~~l~fs~dg~~~~l~s~s-~d~--~i~vwd~~~~~~~~~  504 (1082)
                      ||+.|+.. +.++  .|.+||+.++...    .+..+........|+|||+.  |+..+ .++  .|.++|+.+++. ..
T Consensus       244 Dg~~l~~~~~~~~~~~i~~~d~~~~~~~----~l~~~~~~~~~~~~s~dg~~--l~~~s~~~g~~~iy~~d~~~~~~-~~  316 (417)
T TIGR02800       244 DGSKLAVSLSKDGNPDIYVMDLDGKQLT----RLTNGPGIDTEPSWSPDGKS--IAFTSDRGGSPQIYMMDADGGEV-RR  316 (417)
T ss_pred             CCCEEEEEECCCCCccEEEEECCCCCEE----ECCCCCCCCCCEEECCCCCE--EEEEECCCCCceEEEEECCCCCE-EE
Confidence            99988754 3333  5888998887533    24455555667899999994  44433 333  577788777664 34


Q ss_pred             eecCCcCeEEEeeeecCCceEEEEecCCC---cEEEEecCCC
Q 001415          505 FEGHEAPVYSVCPHHKENIQFIFSTALDG---KIKAWLYDNL  543 (1082)
Q Consensus       505 ~~~h~~~v~~~~~~~~~~~~~l~s~~~dg---~i~iwd~~~~  543 (1082)
                      +..+...+....|+++  +.+++.++.++   .|.+||+.+.
T Consensus       317 l~~~~~~~~~~~~spd--g~~i~~~~~~~~~~~i~~~d~~~~  356 (417)
T TIGR02800       317 LTFRGGYNASPSWSPD--GDLIAFVHREGGGFNIAVMDLDGG  356 (417)
T ss_pred             eecCCCCccCeEECCC--CCEEEEEEccCCceEEEEEeCCCC
Confidence            4445555666677654  46777776665   6888888763

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.20  E-value=3.1e-09  Score=113.73  Aligned_cols=188  Identities=16%  Similarity=0.293  Sum_probs=148.7

Q ss_pred             cCCCeEEEee-CCeEEEEecCCCeeEEEECCC---CCCeeEEEEe------c-------------CCCcEEEEEeCCCcE
Q 001415          796 KNDSYVMSAS-GGKISLFNMMTFKTMATFMPP---PPAATFLAFH------P-------------QDNNIIAIGMDDSSI  852 (1082)
Q Consensus       796 ~dg~~l~~~s-dg~i~iwd~~~~~~~~~~~~~---~~~v~~l~~s------p-------------~~~~~lasg~~dg~v  852 (1082)
                      |-+.++|... ||.+++|+...++....+...   .+..++..|.      |             .|...++-|...|.|
T Consensus         3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v   82 (541)
T KOG4547|consen    3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSV   82 (541)
T ss_pred             chhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccE
Confidence            4455777765 799999999998887776542   2334444442      1             144578889999999


Q ss_pred             EEEecccceeeeeec--ccccCEEEEEEeCCCCEEEEEeCCCcEEEEEcCCcccccceeeeccCCCCCCCCCCcEEEEcC
Q 001415          853 QIYNVRVDEVKSKLK--GHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQ  930 (1082)
Q Consensus       853 ~iwd~~~~~~~~~l~--~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fsp  930 (1082)
                      .+|++..|+....+.  .|.+.|+++.++.+-..|.|++.|+.+..|+.....     ..+......   ..+.+++.+|
T Consensus        83 ~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~-----~~~~~~~~~---~~~~sl~is~  154 (541)
T KOG4547|consen   83 LLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKV-----IIRIWKEQK---PLVSSLCISP  154 (541)
T ss_pred             EEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccce-----eeeeeccCC---CccceEEEcC
Confidence            999999999888875  799999999999999999999999999999998844     344444433   4678999999


Q ss_pred             CCcEEEEEecCeEEEEEccCcceeeeeccCCCCcceeEEEEcCC-----CceEEEee-cCCcEEEEecCC
Q 001415          931 DQIHFLVVHETQLAIFETTKLECVKQWVPRESSAPITHATFSCD-----SQLVYACF-LDATVCVFSAAN  994 (1082)
Q Consensus       931 dg~~l~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~d-----g~~l~t~s-~dg~v~vwd~~~  994 (1082)
                      ||+.++++ .++|++||+++++.+..|.  ||.++|+++.|..+     |++++++. .+..+.+|-+..
T Consensus       155 D~~~l~~a-s~~ik~~~~~~kevv~~ft--gh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~  221 (541)
T KOG4547|consen  155 DGKILLTA-SRQIKVLDIETKEVVITFT--GHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK  221 (541)
T ss_pred             CCCEEEec-cceEEEEEccCceEEEEec--CCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence            99998875 3689999999999999998  99999999999887     77766554 455677886654

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.18  E-value=1.2e-08  Score=115.80  Aligned_cols=198  Identities=14%  Similarity=0.089  Sum_probs=117.8

Q ss_pred             ccCCCCceeEEEEecCCCeEEEEeCC---CeEEEEEccCCceeeEEEEeeccccCeeEEEecCCCCceEEEEEeCCCc--
Q 001415          416 VKDPGVSVNRVIWSPDGSLFGVAYSR---HIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKT--  490 (1082)
Q Consensus       416 ~~~h~~~V~~l~~spdg~~las~~~d---~~v~iwd~~~~~~~~~~~~~~~h~~~V~~l~fs~dg~~~~l~s~s~d~~--  490 (1082)
                      +..+...+.+.+|||||++||..+.+   ..|.+||+.+++...    +....+.....+|+|||+. ++++.+.++.  
T Consensus       213 l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~----lt~~~g~~~~~~wSPDG~~-La~~~~~~g~~~  287 (448)
T PRK04792        213 LLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK----VTSFPGINGAPRFSPDGKK-LALVLSKDGQPE  287 (448)
T ss_pred             eecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE----ecCCCCCcCCeeECCCCCE-EEEEEeCCCCeE
Confidence            44556789999999999999987543   258889998876432    2222334457899999996 3445566665  


Q ss_pred             EEEEEccCCceeEEeecCCcCeEEEeeeecCCceEEEEec-CCCc--EEEEecCCCCceeeecCCCCceEEEEEccCCCe
Q 001415          491 IKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTA-LDGK--IKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTR  567 (1082)
Q Consensus       491 i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~-~dg~--i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~  567 (1082)
                      |.+||+.+++. ..+..+.......+|++++  +.|+..+ .++.  |.++|+.++... .+..........        
T Consensus       288 Iy~~dl~tg~~-~~lt~~~~~~~~p~wSpDG--~~I~f~s~~~g~~~Iy~~dl~~g~~~-~Lt~~g~~~~~~--------  355 (448)
T PRK04792        288 IYVVDIATKAL-TRITRHRAIDTEPSWHPDG--KSLIFTSERGGKPQIYRVNLASGKVS-RLTFEGEQNLGG--------  355 (448)
T ss_pred             EEEEECCCCCe-EECccCCCCccceEECCCC--CEEEEEECCCCCceEEEEECCCCCEE-EEecCCCCCcCe--------
Confidence            77788877764 4455555556677777644  5555444 3444  555565543322 111111112223        


Q ss_pred             eeecccccceeEEEecCCCCEEEEEeC-CC--eEEEEECCCcceEEEEecCCCCCCcCeEEEcCCCCEEEEEECC-Cc--
Q 001415          568 TYQGFRKRSLGVVQFDTTKNRFLAAGD-DF--SIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTND-NG--  641 (1082)
Q Consensus       568 ~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg--~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~d-g~--  641 (1082)
                                   +|+|+|++++..+. ++  .|.++|+.+++... +....   ......|+|||+.|+..+.+ +.  
T Consensus       356 -------------~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~~-lt~~~---~d~~ps~spdG~~I~~~~~~~g~~~  418 (448)
T PRK04792        356 -------------SITPDGRSMIMVNRTNGKFNIARQDLETGAMQV-LTSTR---LDESPSVAPNGTMVIYSTTYQGKQV  418 (448)
T ss_pred             -------------eECCCCCEEEEEEecCCceEEEEEECCCCCeEE-ccCCC---CCCCceECCCCCEEEEEEecCCceE
Confidence                         44555556655443 33  46667888776533 32211   12345899999988876644 33  


Q ss_pred             EEEEEe
Q 001415          642 IKILAT  647 (1082)
Q Consensus       642 i~iwd~  647 (1082)
                      +.+++.
T Consensus       419 l~~~~~  424 (448)
T PRK04792        419 LAAVSI  424 (448)
T ss_pred             EEEEEC
Confidence            555665

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.17  E-value=1.3e-08  Score=116.39  Aligned_cols=199  Identities=13%  Similarity=0.110  Sum_probs=122.3

Q ss_pred             ccCCCCceeEEEEecCCCeEEEEeCC---CeEEEEEccCCceeeEEEEeeccccCeeEEEecCCCCceEEEEEeCCC--c
Q 001415          416 VKDPGVSVNRVIWSPDGSLFGVAYSR---HIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDK--T  490 (1082)
Q Consensus       416 ~~~h~~~V~~l~~spdg~~las~~~d---~~v~iwd~~~~~~~~~~~~~~~h~~~V~~l~fs~dg~~~~l~s~s~d~--~  490 (1082)
                      +..+...+...+|||||++||..+.+   ..|.+||+.+++...    +....+.+...+|+|||+. ++++.+.++  .
T Consensus       194 l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~----l~~~~g~~~~~~~SpDG~~-la~~~~~~g~~~  268 (430)
T PRK00178        194 LLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ----ITNFEGLNGAPAWSPDGSK-LAFVLSKDGNPE  268 (430)
T ss_pred             EecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE----ccCCCCCcCCeEECCCCCE-EEEEEccCCCce
Confidence            44567789999999999999887644   368999999886432    3333445667899999995 334555555  5


Q ss_pred             EEEEEccCCceeEEeecCCcCeEEEeeeecCCceEEEEec-CCC--cEEEEecCCCCceeeecCCCCceEEEEEccCCCe
Q 001415          491 IKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTA-LDG--KIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTR  567 (1082)
Q Consensus       491 i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~-~dg--~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~  567 (1082)
                      |.+||+.+++.. .+..+........|+++  |+.|+..+ .++  .|.++|+.++.... +........          
T Consensus       269 Iy~~d~~~~~~~-~lt~~~~~~~~~~~spD--g~~i~f~s~~~g~~~iy~~d~~~g~~~~-lt~~~~~~~----------  334 (430)
T PRK00178        269 IYVMDLASRQLS-RVTNHPAIDTEPFWGKD--GRTLYFTSDRGGKPQIYKVNVNGGRAER-VTFVGNYNA----------  334 (430)
T ss_pred             EEEEECCCCCeE-EcccCCCCcCCeEECCC--CCEEEEEECCCCCceEEEEECCCCCEEE-eecCCCCcc----------
Confidence            888898887654 45555555666677654  45555444 344  46666665543221 111111111          


Q ss_pred             eeecccccceeEEEecCCCCEEEEEeC-CC--eEEEEECCCcceEEEEecCCCCCCcCeEEEcCCCCEEEEEECC-C--c
Q 001415          568 TYQGFRKRSLGVVQFDTTKNRFLAAGD-DF--SIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTND-N--G  641 (1082)
Q Consensus       568 ~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg--~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~d-g--~  641 (1082)
                                 ...|+|+++.++..+. ++  .|.+||+.+++... +... .  ......|+|||+.++..+.+ +  .
T Consensus       335 -----------~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~~-lt~~-~--~~~~p~~spdg~~i~~~~~~~g~~~  399 (430)
T PRK00178        335 -----------RPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVRI-LTDT-S--LDESPSVAPNGTMLIYATRQQGRGV  399 (430)
T ss_pred             -----------ceEECCCCCEEEEEEccCCceEEEEEECCCCCEEE-ccCC-C--CCCCceECCCCCEEEEEEecCCceE
Confidence                       2345566666665543 22  58889998876533 3221 1  12356899999999877654 3  3


Q ss_pred             EEEEEec
Q 001415          642 IKILATS  648 (1082)
Q Consensus       642 i~iwd~~  648 (1082)
                      +.+++..
T Consensus       400 l~~~~~~  406 (430)
T PRK00178        400 LMLVSIN  406 (430)
T ss_pred             EEEEECC
Confidence            5555553

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.17  E-value=9.9e-09  Score=115.52  Aligned_cols=219  Identities=13%  Similarity=0.071  Sum_probs=125.4

Q ss_pred             CcEEEEEccccceeeeeceeeeccCCCCcccccccccCCCCceeEEEEecCCCeEE---EEeCCC--eEEEEEccCCcee
Q 001415          381 GDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFG---VAYSRH--IVQIYSYHGGDEV  455 (1082)
Q Consensus       381 g~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la---s~~~d~--~v~iwd~~~~~~~  455 (1082)
                      +.|.+.|.+.+....                    +......+.+-+|||||+.++   +...+|  .|.+.++.+++..
T Consensus       165 ~~l~~~d~dG~~~~~--------------------lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~  224 (428)
T PRK01029        165 GELWSVDYDGQNLRP--------------------LTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGK  224 (428)
T ss_pred             ceEEEEcCCCCCceE--------------------cccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCce
Confidence            357777776654332                    334455677889999998633   333333  5777788887644


Q ss_pred             eEEEEeeccccCeeEEEecCCCCceEEEEEeC----CCcEEEEEccCC---ceeEEeecCCcCeEEEeeeecCCceEEEE
Q 001415          456 RQHLEIDAHVGGVNDIAFSHPNKQLCVITCGD----DKTIKVWDATNG---AKQYIFEGHEAPVYSVCPHHKENIQFIFS  528 (1082)
Q Consensus       456 ~~~~~~~~h~~~V~~l~fs~dg~~~~l~s~s~----d~~i~vwd~~~~---~~~~~~~~h~~~v~~~~~~~~~~~~~l~s  528 (1082)
                      +    +....+.....+|||||+. ++++...    +-.+.+|++.++   .......++.+.....+|+|  ||+.|+.
T Consensus       225 ~----lt~~~g~~~~p~wSPDG~~-Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSP--DG~~Laf  297 (428)
T PRK01029        225 K----ILALQGNQLMPTFSPRKKL-LAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSP--DGTRLVF  297 (428)
T ss_pred             E----eecCCCCccceEECCCCCE-EEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECC--CCCEEEE
Confidence            3    3334445567899999996 3333332    223455777653   33333333333445667765  4466665


Q ss_pred             ec-CCCcEEEEec--CCC-CceeeecCCCCceEEEEEccCCCeeeecccccceeEEEecCCCCEEEEEeC---CCeEEEE
Q 001415          529 TA-LDGKIKAWLY--DNL-GSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGD---DFSIKFW  601 (1082)
Q Consensus       529 ~~-~dg~i~iwd~--~~~-~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~---dg~i~iw  601 (1082)
                      .+ .+|...+|.+  ... .....+......+....                     |+|+|+.++..+.   ...|.+|
T Consensus       298 ~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~---------------------wSPDG~~Laf~~~~~g~~~I~v~  356 (428)
T PRK01029        298 VSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPA---------------------WSPDGKKIAFCSVIKGVRQICVY  356 (428)
T ss_pred             EECCCCCceEEEEECcccccceEEeccCCCCcccee---------------------ECCCCCEEEEEEcCCCCcEEEEE
Confidence            54 4666566643  221 11222222222333344                     4555556665432   2479999


Q ss_pred             ECCCcceEEEEecCCCCCCcCeEEEcCCCCEEEEEEC---CCcEEEEEecCC
Q 001415          602 DMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTN---DNGIKILATSDG  650 (1082)
Q Consensus       602 d~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~---dg~i~iwd~~~~  650 (1082)
                      |+.+++........   ..+....|+|||+.|+....   ...|.++++.++
T Consensus       357 dl~~g~~~~Lt~~~---~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g  405 (428)
T PRK01029        357 DLATGRDYQLTTSP---ENKESPSWAIDSLHLVYSAGNSNESELYLISLITK  405 (428)
T ss_pred             ECCCCCeEEccCCC---CCccceEECCCCCEEEEEECCCCCceEEEEECCCC
Confidence            99988765443321   23567899999998876543   345777777665

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=99.11  E-value=2e-09  Score=106.78  Aligned_cols=351  Identities=14%  Similarity=0.186  Sum_probs=210.2

Q ss_pred             EeeccccCeeEEEecCCCCceEEEEEeCCCcEEEEEcc-CCceeEEee-cCCcCeEEEeeeecCCceEEEEecCCCcEEE
Q 001415          460 EIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDAT-NGAKQYIFE-GHEAPVYSVCPHHKENIQFIFSTALDGKIKA  537 (1082)
Q Consensus       460 ~~~~h~~~V~~l~fs~dg~~~~l~s~s~d~~i~vwd~~-~~~~~~~~~-~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~i  537 (1082)
                      .++||.+.|++...-|...  -+++.+.|.+++||--. .++--..+. ....+++++.+.  .+...|+.|-..|++.-
T Consensus        19 ~~eG~~d~vn~~~l~~~e~--gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~--~e~~~L~vg~~ngtvte   94 (404)
T KOG1409|consen   19 KIEGSQDDVNAAILIPKEE--GVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYV--SESRRLYVGQDNGTVTE   94 (404)
T ss_pred             hhcCchhhhhhheeccCCC--CeEEccccceeeeEEeccccccCchhhhhCCCCceEeeee--ccceEEEEEEecceEEE
Confidence            5789999999888888777  58999999999999543 333323332 123455666554  44478888888899888


Q ss_pred             EecCC----CCceeeecCCCCceEEEEEccCCCeeeecccccceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEEe
Q 001415          538 WLYDN----LGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSID  613 (1082)
Q Consensus       538 wd~~~----~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~  613 (1082)
                      +.+..    ......+..|...+..+.|+...                     .++++.+.|..+.---.+.+..+..+.
T Consensus        95 fs~sedfnkm~~~r~~~~h~~~v~~~if~~~~---------------------e~V~s~~~dk~~~~hc~e~~~~lg~Y~  153 (404)
T KOG1409|consen   95 FALSEDFNKMTFLKDYLAHQARVSAIVFSLTH---------------------EWVLSTGKDKQFAWHCTESGNRLGGYN  153 (404)
T ss_pred             EEhhhhhhhcchhhhhhhhhcceeeEEecCCc---------------------eeEEEeccccceEEEeeccCCcccceE
Confidence            85532    22333444455555555554443                     367777777766544445555444332


Q ss_pred             cCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEec-CCccceeecccccccccccccccCCCCccccCCCCceeeeccCC
Q 001415          614 ADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATS-DGIRLLRTFENLAYDASRTSENSKNGDVRSLADVKPRITEESND  692 (1082)
Q Consensus       614 ~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~  692 (1082)
                      ....   .+++.+.-.  +...|...|.+....+. ++..++..+.+|...+.  +..+       .+....+.++..|.
T Consensus       154 ~~~~---~t~~~~d~~--~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~--~l~W-------d~~~~~LfSg~~d~  219 (404)
T KOG1409|consen  154 FETP---ASALQFDAL--YAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVT--CLKW-------DPGQRLLFSGASDH  219 (404)
T ss_pred             eecc---CCCCceeeE--EEEecccccceEEEEEeecCCceEEEEcCcccceE--EEEE-------cCCCcEEEeccccC
Confidence            2211   122222222  56667777776665543 33356777888877776  6666       78888999999999


Q ss_pred             ceeEEEecccCCCCccccccccCcccccceeEEEEccCCceeeecccCCeEEEeeccccccCCCCCccc-c----cCccc
Q 001415          693 KSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATA-S----VAPQL  767 (1082)
Q Consensus       693 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~-~----~~~~~  767 (1082)
                      .+.+||+.......      ....+|...|..+..-+--+.+++++.||.|.+|+++........-... .    ..+..
T Consensus       220 ~vi~wdigg~~g~~------~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~~r~etpewl~s~~cQ~c~qpff  293 (404)
T KOG1409|consen  220 SVIMWDIGGRKGTA------YELQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMNVKRVETPEWLDSDSCQKCNQPFF  293 (404)
T ss_pred             ceEEEeccCCccee------eeeccchhhhhhhhhhhhheeeeeccCCCeEEEEeccceeecCccccccchhhhhCchHH
Confidence            99999997643221      2223488889988888888999999999999999998654221111111 0    12223


Q ss_pred             cCCC------CcceeecccCCCCCCCCccEEEeecCCCeEEEeeCCeEEEEe--------cCCCeeEEEECCCCCCeeEE
Q 001415          768 WQPP------SGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFN--------MMTFKTMATFMPPPPAATFL  833 (1082)
Q Consensus       768 ~~~~------~~~~~~~~~~~~~~~~~i~~l~~s~dg~~l~~~sdg~i~iwd--------~~~~~~~~~~~~~~~~v~~l  833 (1082)
                      |+..      .--......+.  -...+...+-+....+...|..=.+++-|        ... .++..+......|+++
T Consensus       294 wn~~~m~~~k~~glr~h~crk--cg~avc~~c~s~~~~~p~mg~e~~vR~~~~c~~~i~~~~~-t~LA~phei~tgItam  370 (404)
T KOG1409|consen  294 WNFRQMWDRKQLGLRQHHCRK--CGKAVCGKCSSNRSSYPTMGFEFSVRVCDSCYPTIKDEER-TPLAIPHEIKTGITAM  370 (404)
T ss_pred             HHHHHHHhhhhhhhhhhhhhh--hhhhcCcccccCccccccccceeEEEEecccchhhhcCCC-CccccccccccceeEE
Confidence            3221      11111100000  01122222222222233333222344433        222 3344444445578999


Q ss_pred             EEecCCCcEEEEEeCCCcEEEEeccc
Q 001415          834 AFHPQDNNIIAIGMDDSSIQIYNVRV  859 (1082)
Q Consensus       834 ~~sp~~~~~lasg~~dg~v~iwd~~~  859 (1082)
                      .+.. .-.+|++++.|..|+|||+..
T Consensus       371 hlqe-tlglLvTsG~~Rvi~iwd~~~  395 (404)
T KOG1409|consen  371 HLQE-TLGLLVTSGTDRVIKIWDVRS  395 (404)
T ss_pred             Ehhh-hccceeecCCceEEEEEechh
Confidence            9988 777999999999999999864

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.11  E-value=8.8e-09  Score=110.36  Aligned_cols=194  Identities=14%  Similarity=0.201  Sum_probs=146.4

Q ss_pred             ecCCCeEEEEeCCCeEEEEEccCCceeeEEEEeeccccCeeEEEec------C------------CCCceEEEEEeCCCc
Q 001415          429 SPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFS------H------------PNKQLCVITCGDDKT  490 (1082)
Q Consensus       429 spdg~~las~~~d~~v~iwd~~~~~~~~~~~~~~~h~~~V~~l~fs------~------------dg~~~~l~s~s~d~~  490 (1082)
                      .|.+.|+|....||.++||+...++....+.....-++.-++..|.      |            .+....++-|...|.
T Consensus         2 ~~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~   81 (541)
T KOG4547|consen    2 PPALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGS   81 (541)
T ss_pred             CchhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCcc
Confidence            3567899999999999999999887544222222223444555552      1            122237888889999


Q ss_pred             EEEEEccCCceeEEee--cCCcCeEEEeeeecCCceEEEEecCCCcEEEEecCCCCceeeecCCCCceEEEEEccCCCee
Q 001415          491 IKVWDATNGAKQYIFE--GHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRT  568 (1082)
Q Consensus       491 i~vwd~~~~~~~~~~~--~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~  568 (1082)
                      |.++++..|+....+.  .|.+.|.++.++...  ..|.+++.|+.+..|+.........+......+.+++++|||.  
T Consensus        82 v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~--~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~--  157 (541)
T KOG4547|consen   82 VLLYSVAGGEITAKLSTDKHYGNVNEILDAQRL--GCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGK--  157 (541)
T ss_pred             EEEEEecCCeEEEEEecCCCCCcceeeeccccc--CceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCC--
Confidence            9999999999888876  599999999876443  5899999999999999988777777777777777777777765  


Q ss_pred             eecccccceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEEecCCCCCCcCeEEEcCC-----CCEEEEE-ECCCcE
Q 001415          569 YQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKD-----GCLLAVS-TNDNGI  642 (1082)
Q Consensus       569 ~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~d-----g~~l~~~-~~dg~i  642 (1082)
                                         .+++++  +.|++||+++++.+..+.+|..  +|++++|..+     |.++.++ ..+..+
T Consensus       158 -------------------~l~~as--~~ik~~~~~~kevv~~ftgh~s--~v~t~~f~~~~~g~~G~~vLssa~~~r~i  214 (541)
T KOG4547|consen  158 -------------------ILLTAS--RQIKVLDIETKEVVITFTGHGS--PVRTLSFTTLIDGIIGKYVLSSAAAERGI  214 (541)
T ss_pred             -------------------EEEecc--ceEEEEEccCceEEEEecCCCc--ceEEEEEEEeccccccceeeeccccccce
Confidence                               666665  6799999999999999998876  7999999876     6666554 445567


Q ss_pred             EEEEecC
Q 001415          643 KILATSD  649 (1082)
Q Consensus       643 ~iwd~~~  649 (1082)
                      .+|-...
T Consensus       215 ~~w~v~~  221 (541)
T KOG4547|consen  215 TVWVVEK  221 (541)
T ss_pred             eEEEEEc
Confidence            7776544

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=99.08  E-value=6.4e-08  Score=108.81  Aligned_cols=304  Identities=12%  Similarity=0.080  Sum_probs=174.1

Q ss_pred             eEEEEecCCCcEEEEecCCCCceeeecCCCCceEEEEEccCCCeeeecccccceeEEEecCCCCEEEEEeCCCeEEEEEC
Q 001415          524 QFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDM  603 (1082)
Q Consensus       524 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~  603 (1082)
                      ..+++++.++.|..+|..+++................                       .++..+++++.++.+..+|.
T Consensus        66 ~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~-----------------------v~~~~v~v~~~~g~l~ald~  122 (377)
T TIGR03300        66 GKVYAADADGTVVALDAETGKRLWRVDLDERLSGGVG-----------------------ADGGLVFVGTEKGEVIALDA  122 (377)
T ss_pred             CEEEEECCCCeEEEEEccCCcEeeeecCCCCcccceE-----------------------EcCCEEEEEcCCCEEEEEEC
Confidence            4788888899999999888777665544432111111                       12346888888999999999


Q ss_pred             CCcceEEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEecCCccceeecccccccccccccccCCCCccccCCCC
Q 001415          604 DSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKNGDVRSLADVK  683 (1082)
Q Consensus       604 ~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~  683 (1082)
                      .+|+.+.........  ......  .+..++.++.++.+..||..+++.... ........     .+......... +.
T Consensus       123 ~tG~~~W~~~~~~~~--~~~p~v--~~~~v~v~~~~g~l~a~d~~tG~~~W~-~~~~~~~~-----~~~~~~sp~~~-~~  191 (377)
T TIGR03300       123 EDGKELWRAKLSSEV--LSPPLV--ANGLVVVRTNDGRLTALDAATGERLWT-YSRVTPAL-----TLRGSASPVIA-DG  191 (377)
T ss_pred             CCCcEeeeeccCcee--ecCCEE--ECCEEEEECCCCeEEEEEcCCCceeeE-EccCCCce-----eecCCCCCEEE-CC
Confidence            999998776543321  111111  345777788899999999998843322 22111100     00000000011 23


Q ss_pred             ceeeeccCCceeEEEecccCCCCccccccccCcccccc---e-eEEEEccCCceeeecccCCeEEEeeccccccCCCCCc
Q 001415          684 PRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATK---I-SRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKA  759 (1082)
Q Consensus       684 ~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~---i-~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~  759 (1082)
                      .++.+..++.+..+|..++...-....-..........   + ....+  .+..+++++.++.+..+|...++       
T Consensus       192 ~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~--~~~~vy~~~~~g~l~a~d~~tG~-------  262 (377)
T TIGR03300       192 GVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVV--DGGQVYAVSYQGRVAALDLRSGR-------  262 (377)
T ss_pred             EEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEE--ECCEEEEEEcCCEEEEEECCCCc-------
Confidence            56677777888888876543221111000000000000   0 11111  24467777788888888764322       


Q ss_pred             ccccCccccCCCCcceeecccCCCCCCCCccEEEeecCCCeEEEe-eCCeEEEEecCCCeeEEEECCCC-CCeeEEEEec
Q 001415          760 TASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSA-SGGKISLFNMMTFKTMATFMPPP-PAATFLAFHP  837 (1082)
Q Consensus       760 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~l~~~-sdg~i~iwd~~~~~~~~~~~~~~-~~v~~l~~sp  837 (1082)
                            .+|....+              ......  .++..+.++ .+|.+..+|..+++.+....... ....+...  
T Consensus       263 ------~~W~~~~~--------------~~~~p~--~~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i--  318 (377)
T TIGR03300       263 ------VLWKRDAS--------------SYQGPA--VDDNRLYVTDADGVVVALDRRSGSELWKNDELKYRQLTAPAV--  318 (377)
T ss_pred             ------EEEeeccC--------------CccCce--EeCCEEEEECCCCeEEEEECCCCcEEEccccccCCccccCEE--
Confidence                  23332210              011122  233444444 57999999999998876653222 22233333  


Q ss_pred             CCCcEEEEEeCCCcEEEEecccceeeeeecccccCEEE-EEEeCCCCEEEEEeCCCcEEEE
Q 001415          838 QDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITG-LAFSHALNVLVSSGADSQLCVW  897 (1082)
Q Consensus       838 ~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~-l~~s~d~~~l~s~s~Dg~i~vw  897 (1082)
                       .+..|++++.+|.|+++|..+|+.+..++.+...+.. .++. ++ .|+.++.||.|..+
T Consensus       319 -~g~~l~~~~~~G~l~~~d~~tG~~~~~~~~~~~~~~~sp~~~-~~-~l~v~~~dG~l~~~  376 (377)
T TIGR03300       319 -VGGYLVVGDFEGYLHWLSREDGSFVARLKTDGSGIASPPVVV-GD-GLLVQTRDGDLYAF  376 (377)
T ss_pred             -ECCEEEEEeCCCEEEEEECCCCCEEEEEEcCCCccccCCEEE-CC-EEEEEeCCceEEEe
Confidence             2347788999999999999999999888866654433 3333 33 57888899988765

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=99.07  E-value=2e-08  Score=97.88  Aligned_cols=199  Identities=12%  Similarity=0.138  Sum_probs=135.4

Q ss_pred             ccEEEeecCCCeEEEee-CCeEEEEecCCCee--EEEECCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEecc-cceeee
Q 001415          789 VPCFALSKNDSYVMSAS-GGKISLFNMMTFKT--MATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVR-VDEVKS  864 (1082)
Q Consensus       789 i~~l~~s~dg~~l~~~s-dg~i~iwd~~~~~~--~~~~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~-~~~~~~  864 (1082)
                      ..++.|++.+.-++++. +|.+.+-+......  ++..+.|.-++....|+..+.+++.+|++|+.+.-||++ .++.+.
T Consensus       124 ~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~  203 (339)
T KOG0280|consen  124 ALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIW  203 (339)
T ss_pred             eeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceee
Confidence            45678888888877775 58888666554443  347889999999999998788899999999999999998 445444


Q ss_pred             e-ecccccCEEEEEEeC-CCCEEEEEeCCCcEEEEEcCCcccccceeeeccCCCCCCCCCCcEEEEcCC--CcEEEEEec
Q 001415          865 K-LKGHSKRITGLAFSH-ALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQD--QIHFLVVHE  940 (1082)
Q Consensus       865 ~-l~~h~~~V~~l~~s~-d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspd--g~~l~~~~d  940 (1082)
                      . .+-|...|.+|.-+| ++.++++|+.|..|++||.+.-..      .......  .++|-.+..+|.  ++.|+++.-
T Consensus       204 ~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~k------Pl~~~~v--~GGVWRi~~~p~~~~~lL~~CMh  275 (339)
T KOG0280|consen  204 HNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGK------PLFKAKV--GGGVWRIKHHPEIFHRLLAACMH  275 (339)
T ss_pred             ecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccC------ccccCcc--ccceEEEEecchhhhHHHHHHHh
Confidence            3 567889999998875 578999999999999999986221      1111111  167889999985  445556665


Q ss_pred             CeEEEEEccCccee---eeeccCCCCcceeEEEEcCCCceEEEee-cCCcEE-EEecCCc
Q 001415          941 TQLAIFETTKLECV---KQWVPRESSAPITHATFSCDSQLVYACF-LDATVC-VFSAANL  995 (1082)
Q Consensus       941 ~~i~iwd~~~~~~~---~~~~~~~h~~~i~~l~~s~dg~~l~t~s-~dg~v~-vwd~~~~  995 (1082)
                      +..+|.+.+.+...   .......|.+-...-.|.....+|||++ .|+.++ +|-..++
T Consensus       276 ~G~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~~~~lATCsFYDk~~~~~Wl~~t~  335 (339)
T KOG0280|consen  276 NGAKILDSSDKVLEFQIVLPSDKIHDSLCYGGDWDSKDSFLATCSFYDKKIRQLWLHITG  335 (339)
T ss_pred             cCceEEEecccccchheeeeccccccceeeccccccccceeeeeeccccceeeeeeeccC
Confidence            66666666544332   1111124444444444533335688865 566644 6755444

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.02  E-value=1.4e-07  Score=117.22  Aligned_cols=257  Identities=9%  Similarity=0.079  Sum_probs=160.7

Q ss_pred             ccEEEeecCCC-eEEEee-CCeEEEEecCCCeeEEEECC--C------------CCCeeEEEEecCCCcEEEE-EeCCCc
Q 001415          789 VPCFALSKNDS-YVMSAS-GGKISLFNMMTFKTMATFMP--P------------PPAATFLAFHPQDNNIIAI-GMDDSS  851 (1082)
Q Consensus       789 i~~l~~s~dg~-~l~~~s-dg~i~iwd~~~~~~~~~~~~--~------------~~~v~~l~~sp~~~~~las-g~~dg~  851 (1082)
                      ...+++++++. ++++-. .+.|++||... ..+..+.+  .            -.....+++++ ++..|++ -..++.
T Consensus       570 P~gvavd~~~g~lyVaDs~n~rI~v~d~~G-~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~-~gn~LYVaDt~n~~  647 (1057)
T PLN02919        570 PGKLAIDLLNNRLFISDSNHNRIVVTDLDG-NFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNA-KKNLLYVADTENHA  647 (1057)
T ss_pred             CceEEEECCCCeEEEEECCCCeEEEEeCCC-CEEEEEccCCCcCCCCCchhccccCCCcEEEEeC-CCCEEEEEeCCCce
Confidence            35688987644 444444 57899999864 44433332  1            12367899999 5554444 445678


Q ss_pred             EEEEecccceeeeeeccc-----------------ccCEEEEEEeC-CCCEEEEEeCCCcEEEEEcCCcccccce---ee
Q 001415          852 IQIYNVRVDEVKSKLKGH-----------------SKRITGLAFSH-ALNVLVSSGADSQLCVWSSDGWEKQKNR---FL  910 (1082)
Q Consensus       852 v~iwd~~~~~~~~~l~~h-----------------~~~V~~l~~s~-d~~~l~s~s~Dg~i~vwd~~~~~~~~~~---~~  910 (1082)
                      |+++|..++.. .++.+-                 -..-+.++|+| ++.++++.+.++.|++||..++......   ..
T Consensus       648 Ir~id~~~~~V-~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G~~  726 (1057)
T PLN02919        648 LREIDFVNETV-RTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFSGDGYE  726 (1057)
T ss_pred             EEEEecCCCEE-EEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEecCCcc
Confidence            99999877643 333110                 11236799999 5666677778889999998875431100   00


Q ss_pred             eccCCCC---CCCCCCcEEEEcCCCcEEEE--EecCeEEEEEccCcceeeee-----------ccC--------CCCcce
Q 001415          911 QIPTGRT---PTAQSDTRVQFHQDQIHFLV--VHETQLAIFETTKLECVKQW-----------VPR--------ESSAPI  966 (1082)
Q Consensus       911 ~~~~~~~---~~~~~v~~~~fspdg~~l~~--~~d~~i~iwd~~~~~~~~~~-----------~~~--------~h~~~i  966 (1082)
                      ....+..   ........++|+|+|..|.+  ..++.|++||+.++......           ...        ......
T Consensus       727 ~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P  806 (1057)
T PLN02919        727 RNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHP  806 (1057)
T ss_pred             ccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCC
Confidence            0000100   01134578999999986655  45689999999876532110           000        011235


Q ss_pred             eEEEEcCCCceEEEeecCCcEEEEecCCceeeeeeCCCe-ecCCCC--CCCCceeeEEEEeCCCCCeEEEEecCCcEEEE
Q 001415          967 THATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSA-YLPAGV--SSSNVHPLVIAAHPQEPNEFALGLSDGGVHVF 1043 (1082)
Q Consensus       967 ~~l~~s~dg~~l~t~s~dg~v~vwd~~~~~~~~~~~~~~-~~~~gh--~~~~v~~~~~~~~~~d~~~l~s~~~dg~v~vW 1043 (1082)
                      ..++++++|..+++-+.+++|++||..++.......... ....|.  .+.--.+..+++++ +|+++++-+.+++|++|
T Consensus       807 ~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~-dG~lyVaDt~Nn~Irvi  885 (1057)
T PLN02919        807 LGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGE-NGRLFVADTNNSLIRYL  885 (1057)
T ss_pred             ceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeC-CCCEEEEECCCCEEEEE
Confidence            689999999988888899999999999887764432110 001110  01112466788888 58888888899999999


Q ss_pred             ccCCCC
Q 001415         1044 EPLESE 1049 (1082)
Q Consensus      1044 ~~~~~~ 1049 (1082)
                      |+.+++
T Consensus       886 d~~~~~  891 (1057)
T PLN02919        886 DLNKGE  891 (1057)
T ss_pred             ECCCCc
Confidence            999876

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.02  E-value=1.8e-09  Score=113.09  Aligned_cols=290  Identities=15%  Similarity=0.115  Sum_probs=186.7

Q ss_pred             ccCCCCceeEEEEecCCCeEEEEeCCCeEEEEEccCC-cee---eEEEEeeccccCeeEEEecCCCCceEEEEEeCCCcE
Q 001415          416 VKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGG-DEV---RQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTI  491 (1082)
Q Consensus       416 ~~~h~~~V~~l~~spdg~~las~~~d~~v~iwd~~~~-~~~---~~~~~~~~h~~~V~~l~fs~dg~~~~l~s~s~d~~i  491 (1082)
                      +.||+..|..++--.+.+-+++++.|++|++|.++.. ..+   ....++..|..+|.++.|-.+-+  +++++  |+.|
T Consensus       731 f~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr--~i~Sc--D~gi  806 (1034)
T KOG4190|consen  731 FTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLR--SIASC--DGGI  806 (1034)
T ss_pred             ccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccc--eeeec--cCcc
Confidence            7899999999988888889999999999999998742 222   24457889999999999999887  56665  8999


Q ss_pred             EEEEccCCceeEEeec--CCcCeEEEeeeecCCceEEEEe-cCCCcEEEEecCCCCceeeecCCCCceEEEEEccCCCee
Q 001415          492 KVWDATNGAKQYIFEG--HEAPVYSVCPHHKENIQFIFST-ALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRT  568 (1082)
Q Consensus       492 ~vwd~~~~~~~~~~~~--h~~~v~~~~~~~~~~~~~l~s~-~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~  568 (1082)
                      ++||.--|+.+..+..  ..+.+..+...++-+...+++| +...+|+++|.+..+-...+.....        |     
T Consensus       807 HlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna--------~-----  873 (1034)
T KOG4190|consen  807 HLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNA--------P-----  873 (1034)
T ss_pred             eeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccC--------C-----
Confidence            9999888877653321  1222222222244344555555 6789999999886554433221110        0     


Q ss_pred             eecccccceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEE-EEe
Q 001415          569 YQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKI-LAT  647 (1082)
Q Consensus       569 ~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~i-wd~  647 (1082)
                         .....+.+++..+.|+.++++-.+|.|.+.|.++|+.+..+.....  ....++ .|..+.|+....|.++.+ |..
T Consensus       874 ---~Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~vINswrpmec--dllqla-apsdq~L~~saldHslaVnWha  947 (1034)
T KOG4190|consen  874 ---GPNALTRAIAVADKGNKLAAALSNGCIAILDARNGKVINSWRPMEC--DLLQLA-APSDQALAQSALDHSLAVNWHA  947 (1034)
T ss_pred             ---CCchheeEEEeccCcchhhHHhcCCcEEEEecCCCceeccCCcccc--hhhhhc-CchhHHHHhhcccceeEeeehh
Confidence               0112456777788888999999999999999999999887764322  122222 356677777778888888 877


Q ss_pred             cCCccceeecccccccccccccccCCCCccccCCCCceeeeccCCceeEEEecccC----CCCccccccccCccccccee
Q 001415          648 SDGIRLLRTFENLAYDASRTSENSKNGDVRSLADVKPRITEESNDKSKVWKLTELS----EPNQCRSLRLPENLRATKIS  723 (1082)
Q Consensus       648 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~----~~~~~~~~~~~~~~~~~~i~  723 (1082)
                      .++....+ ......+.     .|      ...-|..+++....+.+.+|.-....    ...+++.-.     ..+..+
T Consensus       948 ldgimh~q-~kpppepa-----hf------lqsvgpSLV~a~~Gn~lgVYad~a~~ha~stitKiR~d~-----f~G~lT 1010 (1034)
T KOG4190|consen  948 LDGIMHLQ-DKPPPEPA-----HF------LQSVGPSLVTAQNGNILGVYADSAELHAESTITKIRPDE-----FPGTLT 1010 (1034)
T ss_pred             cCCeeeec-cCCCCcch-----hh------hhccCceeEEeccCcEEEEEecchhhhhhhhhccccccc-----cCCccc
Confidence            66622221 11111110     11      12234556666666667776533211    111222222     345677


Q ss_pred             EEEEccCCceeeecccCCeEEE
Q 001415          724 RLIFTNSGNAILALASNAIHLL  745 (1082)
Q Consensus       724 ~~~~s~~~~~l~~~~~d~~i~i  745 (1082)
                      +++.-|-...++++...|.|.+
T Consensus      1011 ala~LPLN~afLaGne~G~IaL 1032 (1034)
T KOG4190|consen 1011 ALAPLPLNCAFLAGNEHGAIAL 1032 (1034)
T ss_pred             eeeeccccchhhccCCCCceee
Confidence            7888887777888888777764

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=99.00  E-value=3.3e-07  Score=103.01  Aligned_cols=192  Identities=13%  Similarity=0.024  Sum_probs=117.3

Q ss_pred             CCCeEEEEeCCCeEEEEEccCCceeeEEEEeeccccCeeEEEecCCCCceEEEEEeCCCcEEEEEccCCceeEEeecCCc
Q 001415          431 DGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEA  510 (1082)
Q Consensus       431 dg~~las~~~d~~v~iwd~~~~~~~~~~~~~~~h~~~V~~l~fs~dg~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~  510 (1082)
                      ++..+.+++.++.|.-+|..+|+.+-..   .-.......++.  ++.  .++.++.++.+..+|..+|+.+...... +
T Consensus        64 ~~~~v~v~~~~g~v~a~d~~tG~~~W~~---~~~~~~~~~p~v--~~~--~v~v~~~~g~l~ald~~tG~~~W~~~~~-~  135 (377)
T TIGR03300        64 AGGKVYAADADGTVVALDAETGKRLWRV---DLDERLSGGVGA--DGG--LVFVGTEKGEVIALDAEDGKELWRAKLS-S  135 (377)
T ss_pred             ECCEEEEECCCCeEEEEEccCCcEeeee---cCCCCcccceEE--cCC--EEEEEcCCCEEEEEECCCCcEeeeeccC-c
Confidence            4668888888999999999999876532   211111122222  345  4777888999999999999998766532 2


Q ss_pred             CeEEEeeeecCCceEEEEecCCCcEEEEecCCCCceeeecCCCCceEEEEEccCCCeeeecccccceeEEEecCCCCEEE
Q 001415          511 PVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFL  590 (1082)
Q Consensus       511 ~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~i~~~~~~~~~~~l~  590 (1082)
                      .+.+....   .+..++.++.++.+..||.++++.............   ......             ....  +..++
T Consensus       136 ~~~~~p~v---~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~---~~~~~s-------------p~~~--~~~v~  194 (377)
T TIGR03300       136 EVLSPPLV---ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALT---LRGSAS-------------PVIA--DGGVL  194 (377)
T ss_pred             eeecCCEE---ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCcee---ecCCCC-------------CEEE--CCEEE
Confidence            22221111   123677788899999999998877665544322111   000000             0011  12577


Q ss_pred             EEeCCCeEEEEECCCcceEEEEecCCCC--CCc---CeEEEcC--CCCEEEEEECCCcEEEEEecCCc
Q 001415          591 AAGDDFSIKFWDMDSVQLLTSIDADGGL--PAS---PRIRFNK--DGCLLAVSTNDNGIKILATSDGI  651 (1082)
Q Consensus       591 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~--~~i---~~~~~s~--dg~~l~~~~~dg~i~iwd~~~~~  651 (1082)
                      .+..++.+..+|..+|+.+.........  ..+   ..+.-+|  .+..+++++.+|.+..||..+++
T Consensus       195 ~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~  262 (377)
T TIGR03300       195 VGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGR  262 (377)
T ss_pred             EECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCCc
Confidence            7788899999999999877654321110  000   0011111  35678888889999999988773

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>PRK04043 tolB translocation protein TolB; Provisional

Probab=99.00  E-value=1.1e-07  Score=106.18  Aligned_cols=156  Identities=9%  Similarity=0.012  Sum_probs=97.2

Q ss_pred             CCceEEEEecCCCeEEEEEcC---CCcEEEEEccccceeeeeceeeeccCCCCcccccccccCCCCceeEEEEecCCCeE
Q 001415          359 SSPMSMDFHPVQQTLLLVGTN---VGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLF  435 (1082)
Q Consensus       359 ~~v~~~~~spdg~~llasgs~---dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l  435 (1082)
                      +.+....|||||+++++..+.   +..|.++|+.+|+...                    +....+.+...+|||||+.|
T Consensus       188 ~~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~--------------------lt~~~g~~~~~~~SPDG~~l  247 (419)
T PRK04043        188 GLNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEK--------------------IASSQGMLVVSDVSKDGSKL  247 (419)
T ss_pred             CCeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEE--------------------EecCCCcEEeeEECCCCCEE
Confidence            378899999999864553333   3569999998887654                    22344556778899999988


Q ss_pred             EEEeC---CCeEEEEEccCCceeeEEEEeeccccCeeEEEecCCCCceEEEEEeCCC--cEEEEEccCCceeEEeecCCc
Q 001415          436 GVAYS---RHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDK--TIKVWDATNGAKQYIFEGHEA  510 (1082)
Q Consensus       436 as~~~---d~~v~iwd~~~~~~~~~~~~~~~h~~~V~~l~fs~dg~~~~l~s~s~d~--~i~vwd~~~~~~~~~~~~h~~  510 (1082)
                      +....   +..|.++|+.+++..    .+..+.+......|+|||+.+++.+ ...+  .|.+.|+.+|+..+.... ..
T Consensus       248 a~~~~~~g~~~Iy~~dl~~g~~~----~LT~~~~~d~~p~~SPDG~~I~F~S-dr~g~~~Iy~~dl~~g~~~rlt~~-g~  321 (419)
T PRK04043        248 LLTMAPKGQPDIYLYDTNTKTLT----QITNYPGIDVNGNFVEDDKRIVFVS-DRLGYPNIFMKKLNSGSVEQVVFH-GK  321 (419)
T ss_pred             EEEEccCCCcEEEEEECCCCcEE----EcccCCCccCccEECCCCCEEEEEE-CCCCCceEEEEECCCCCeEeCccC-CC
Confidence            76532   346888888877633    2433443344568999999743333 3333  588888887776443321 11


Q ss_pred             CeEEEeeeecCCceEEEEecCC---------CcEEEEecCCCC
Q 001415          511 PVYSVCPHHKENIQFIFSTALD---------GKIKAWLYDNLG  544 (1082)
Q Consensus       511 ~v~~~~~~~~~~~~~l~s~~~d---------g~i~iwd~~~~~  544 (1082)
                      .  ...|+|  +|+.|+..+..         ..|.+.|++++.
T Consensus       322 ~--~~~~SP--DG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~  360 (419)
T PRK04043        322 N--NSSVST--YKNYIVYSSRETNNEFGKNTFNLYLISTNSDY  360 (419)
T ss_pred             c--CceECC--CCCEEEEEEcCCCcccCCCCcEEEEEECCCCC
Confidence            1  235655  44566555433         256666776554

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=99.00  E-value=3.7e-08  Score=96.04  Aligned_cols=191  Identities=19%  Similarity=0.121  Sum_probs=134.0

Q ss_pred             CCCceEEEEe---cCCCeEEEEEcCCCcEEEEEccccceeee-eceeeeccCCCCcccccccccCCCCceeEEEEecCCC
Q 001415          358 GSSPMSMDFH---PVQQTLLLVGTNVGDIGLWEVGSRERLVL-RNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGS  433 (1082)
Q Consensus       358 ~~~v~~~~~s---pdg~~llasgs~dg~i~iwd~~~~~~~~~-~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~  433 (1082)
                      ++.+..|.|+   -+|...++-+..+|.|.++.......... +.+..              .+-....-.++.|++.|.
T Consensus        69 ts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~--------------~ki~~~~~lslD~~~~~~  134 (339)
T KOG0280|consen   69 TSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSS--------------KKISVVEALSLDISTSGT  134 (339)
T ss_pred             ccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccch--------------hhhhheeeeEEEeeccCc
Confidence            4556666665   35554567777788888887654322211 11100              000011345788999999


Q ss_pred             eEEEEeCCCeEEEEEccCCceeeEEEEeeccccCeeEEEecCCCCceEEEEEeCCCcEEEEEcc-CCceeEE-eecCCcC
Q 001415          434 LFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDAT-NGAKQYI-FEGHEAP  511 (1082)
Q Consensus       434 ~las~~~d~~v~iwd~~~~~~~~~~~~~~~h~~~V~~l~fs~dg~~~~l~s~s~d~~i~vwd~~-~~~~~~~-~~~h~~~  511 (1082)
                      .++++..+|.+.+-+..... +....++++|.-..+...|+..... ++.+||+|+.+..||++ .++.+.. .+.|...
T Consensus       135 ~i~vs~s~G~~~~v~~t~~~-le~vq~wk~He~E~Wta~f~~~~pn-lvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~G  212 (339)
T KOG0280|consen  135 KIFVSDSRGSISGVYETEMV-LEKVQTWKVHEFEAWTAKFSDKEPN-LVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSG  212 (339)
T ss_pred             eEEEEcCCCcEEEEecceee-eeecccccccceeeeeeecccCCCc-eEEecCCCceEEEEEecCCcceeeecceeeecc
Confidence            99999999999855544432 3344478899999999999987776 89999999999999998 4555544 5668899


Q ss_pred             eEEEeeeecCCceEEEEecCCCcEEEEecCCCCceeeecCCCCceEEEEEccCC
Q 001415          512 VYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADG  565 (1082)
Q Consensus       512 v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~  565 (1082)
                      |.++.-++ +.+.+|++|+.|..|++||.++..+...-....+.|..+...|.-
T Consensus       213 V~SI~ss~-~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~v~GGVWRi~~~p~~  265 (339)
T KOG0280|consen  213 VVSIYSSP-PKPTYIATGSYDECIRVLDTRNMGKPLFKAKVGGGVWRIKHHPEI  265 (339)
T ss_pred             eEEEecCC-CCCceEEEeccccceeeeehhcccCccccCccccceEEEEecchh
Confidence            99987655 355799999999999999999766665555555677777766653

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=98.98  E-value=8.8e-09  Score=122.74  Aligned_cols=215  Identities=12%  Similarity=0.248  Sum_probs=154.0

Q ss_pred             EEEEEeCCCeEEEEECCCcceEEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEecCCccceeeccccccccccc
Q 001415          588 RFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRT  667 (1082)
Q Consensus       588 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  667 (1082)
                      .+.....++...-|..+.+..+..-    +...+.++.-+|...+-++|+.||.+++|....+                 
T Consensus      2182 ~~~~~n~~~~~~tq~~~~~~~~~k~----~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~----------------- 2240 (2439)
T KOG1064|consen 2182 RFTPSNLPWLGSTQTSRGASVMIKH----PVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHG----------------- 2240 (2439)
T ss_pred             cCCcccCCccccceecccceeEeec----ccCceeeecCCCCCceEEecCCCceEEEEeccCC-----------------
Confidence            3444444555555554433332222    1235777888888888999999999999986544                 


Q ss_pred             ccccCCCCccccCCCCceeeeccCCceeEEEecccCCCCccccccccCcccccceeEEEEccCCceeeecccCCeEEEee
Q 001415          668 SENSKNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWK  747 (1082)
Q Consensus       668 ~~~~~~~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iw~  747 (1082)
                                              ..|..|+..                 ...+++.+.|+.+|+....+..||.+.+|.
T Consensus      2241 ------------------------~~v~~~rt~-----------------g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q 2279 (2439)
T KOG1064|consen 2241 ------------------------QQVVCFRTA-----------------GNSRVTRSRFNHQGNKFGIVDGDGDLSLWQ 2279 (2439)
T ss_pred             ------------------------CeEEEeecc-----------------CcchhhhhhhcccCCceeeeccCCceeecc
Confidence                                    234445443                 236788899999999999999999999996


Q ss_pred             ccccccCCCCCcccccCccccCCCCcceeecccCCCCCCCCccEEEeecCCCeEEEee----CCeEEEEecCC-CeeEEE
Q 001415          748 WQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS----GGKISLFNMMT-FKTMAT  822 (1082)
Q Consensus       748 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~l~~~s----dg~i~iwd~~~-~~~~~~  822 (1082)
                      .....                          ....+.|......+.|-.  ..+++++    ++.+.+||.-- +..-..
T Consensus      2280 ~~pk~--------------------------~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v 2331 (2439)
T KOG1064|consen 2280 ASPKP--------------------------YTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLV 2331 (2439)
T ss_pred             cCCcc--------------------------eeccccCCccccceeeee--hhhhccccCCCCCcccchhcccCccccee
Confidence            54111                          111233777788888866  5666664    36799999752 222222


Q ss_pred             ECCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEecccceeeeeecccccCEEEEEEeCCCCEEEEEeCCCcEEEEEcCCc
Q 001415          823 FMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGW  902 (1082)
Q Consensus       823 ~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~  902 (1082)
                      -..|.+.++++++.| ..++|++|+.+|.|++||++..+++..++.         +. ...++++++..|.|+||++...
T Consensus      2332 ~~~H~~gaT~l~~~P-~~qllisggr~G~v~l~D~rqrql~h~~~~---------~~-~~~~f~~~ss~g~ikIw~~s~~ 2400 (2439)
T KOG1064|consen 2332 HTCHDGGATVLAYAP-KHQLLISGGRKGEVCLFDIRQRQLRHTFQA---------LD-TREYFVTGSSEGNIKIWRLSEF 2400 (2439)
T ss_pred             eeecCCCceEEEEcC-cceEEEecCCcCcEEEeehHHHHHHHHhhh---------hh-hhheeeccCcccceEEEEcccc
Confidence            277999999999999 899999999999999999998887766664         33 5678999999999999999884


Q ss_pred             c
Q 001415          903 E  903 (1082)
Q Consensus       903 ~  903 (1082)
                      .
T Consensus      2401 ~ 2401 (2439)
T KOG1064|consen 2401 G 2401 (2439)
T ss_pred             c
Confidence            3

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=98.97  E-value=3.7e-09  Score=125.84  Aligned_cols=196  Identities=19%  Similarity=0.337  Sum_probs=154.5

Q ss_pred             CCCCceEEEEecCCCeEEEEEcCCCcEEEEEccccceeeeeceeeeccCCCCcccccccccCCCCceeEEEEecCCCeEE
Q 001415          357 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFG  436 (1082)
Q Consensus       357 h~~~v~~~~~spdg~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la  436 (1082)
                      +-..|.++.=+|...+ .+||+.||.|++|.+..++.+..     |+            ..|. ..|+.+.|+..|..+.
T Consensus      2207 ~v~~v~r~~sHp~~~~-Yltgs~dgsv~~~~w~~~~~v~~-----~r------------t~g~-s~vtr~~f~~qGnk~~ 2267 (2439)
T KOG1064|consen 2207 PVENVRRMTSHPSDPY-YLTGSQDGSVRMFEWGHGQQVVC-----FR------------TAGN-SRVTRSRFNHQGNKFG 2267 (2439)
T ss_pred             ccCceeeecCCCCCce-EEecCCCceEEEEeccCCCeEEE-----ee------------ccCc-chhhhhhhcccCCcee
Confidence            5588999999999995 88999999999999988877653     22            2233 7899999999999999


Q ss_pred             EEeCCCeEEEEEccCCceeeEEEEeeccccCeeEEEecCCCCceEEEEEe---CCCcEEEEEccC-C--ceeEEeecCCc
Q 001415          437 VAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCG---DDKTIKVWDATN-G--AKQYIFEGHEA  510 (1082)
Q Consensus       437 s~~~d~~v~iwd~~~~~~~~~~~~~~~h~~~V~~l~fs~dg~~~~l~s~s---~d~~i~vwd~~~-~--~~~~~~~~h~~  510 (1082)
                      .+..||.+.+|.+.. +   .....+.|........|-.  .  ++++++   .++.+.+||..- +  .++.  +.|.+
T Consensus      2268 i~d~dg~l~l~q~~p-k---~~~s~qchnk~~~Df~Fi~--s--~~~tag~s~d~~n~~lwDtl~~~~~s~v~--~~H~~ 2337 (2439)
T KOG1064|consen 2268 IVDGDGDLSLWQASP-K---PYTSWQCHNKALSDFRFIG--S--LLATAGRSSDNRNVCLWDTLLPPMNSLVH--TCHDG 2337 (2439)
T ss_pred             eeccCCceeecccCC-c---ceeccccCCccccceeeee--h--hhhccccCCCCCcccchhcccCcccceee--eecCC
Confidence            999999999999883 2   3336778999999999976  3  567664   567899999653 2  2333  78999


Q ss_pred             CeEEEeeeecCCceEEEEecCCCcEEEEecCCCCceeeecCCCCceEEEEEccCCCeeeecccccceeEEEecCCCCEEE
Q 001415          511 PVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFL  590 (1082)
Q Consensus       511 ~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~i~~~~~~~~~~~l~  590 (1082)
                      .++++++.|..  ++|++|+.+|.|++||++..+....+..                              ++ ...+|+
T Consensus      2338 gaT~l~~~P~~--qllisggr~G~v~l~D~rqrql~h~~~~------------------------------~~-~~~~f~ 2384 (2439)
T KOG1064|consen 2338 GATVLAYAPKH--QLLISGGRKGEVCLFDIRQRQLRHTFQA------------------------------LD-TREYFV 2384 (2439)
T ss_pred             CceEEEEcCcc--eEEEecCCcCcEEEeehHHHHHHHHhhh------------------------------hh-hhheee
Confidence            99999987665  7999999999999999987655544432                              11 123799


Q ss_pred             EEeCCCeEEEEECCCcceEEEEec
Q 001415          591 AAGDDFSIKFWDMDSVQLLTSIDA  614 (1082)
Q Consensus       591 ~~~~dg~i~iwd~~~~~~~~~~~~  614 (1082)
                      +++..|.|+||++.....+..+..
T Consensus      2385 ~~ss~g~ikIw~~s~~~ll~~~p~ 2408 (2439)
T KOG1064|consen 2385 TGSSEGNIKIWRLSEFGLLHTFPS 2408 (2439)
T ss_pred             ccCcccceEEEEccccchhhcCch
Confidence            999999999999998877776653

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=98.96  E-value=5.6e-07  Score=111.94  Aligned_cols=274  Identities=14%  Similarity=0.187  Sum_probs=164.1

Q ss_pred             eEEEEecCCCeEEEEEcCCCcEEEEEccccceeeeeceeeeccCCCCcccccccccCCCCceeEEEEecCCCeEEEEe-C
Q 001415          362 MSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAY-S  440 (1082)
Q Consensus       362 ~~~~~spdg~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~-~  440 (1082)
                      ..+++++++..++++-+.++.|.+||.... .+....    ....... .....-..+-.....+++++++..|.++. .
T Consensus       571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G~-~i~~ig----~~g~~G~-~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~  644 (1057)
T PLN02919        571 GKLAIDLLNNRLFISDSNHNRIVVTDLDGN-FIVQIG----STGEEGL-RDGSFEDATFNRPQGLAYNAKKNLLYVADTE  644 (1057)
T ss_pred             ceEEEECCCCeEEEEECCCCeEEEEeCCCC-EEEEEc----cCCCcCC-CCCchhccccCCCcEEEEeCCCCEEEEEeCC
Confidence            578999865547888888899999998643 332100    0000000 00000111223468899999988776665 4


Q ss_pred             CCeEEEEEccCCceeeEEEEeec--c---------------ccCeeEEEecCCCCceEEEEEeCCCcEEEEEccCCceeE
Q 001415          441 RHIVQIYSYHGGDEVRQHLEIDA--H---------------VGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQY  503 (1082)
Q Consensus       441 d~~v~iwd~~~~~~~~~~~~~~~--h---------------~~~V~~l~fs~dg~~~~l~s~s~d~~i~vwd~~~~~~~~  503 (1082)
                      ++.|+++|..++...    ++.+  .               -..-..++|+|++.. ++++.+.++.|++||..++... 
T Consensus       645 n~~Ir~id~~~~~V~----tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~-LyVad~~~~~I~v~d~~~g~v~-  718 (1057)
T PLN02919        645 NHALREIDFVNETVR----TLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEK-VYIAMAGQHQIWEYNISDGVTR-  718 (1057)
T ss_pred             CceEEEEecCCCEEE----EEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCe-EEEEECCCCeEEEEECCCCeEE-
Confidence            567999998876432    1211  0               112467999995543 6777788899999998877543 


Q ss_pred             EeecC---------------CcCeEEEeeeecCCceEEEEecCCCcEEEEecCCCCceeeecCCCCc-eEEEEEc-cCCC
Q 001415          504 IFEGH---------------EAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRW-CTTMAYS-ADGT  566 (1082)
Q Consensus       504 ~~~~h---------------~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~-v~~~~~s-~d~~  566 (1082)
                      .+.+.               -.....++++++.+ .++++-+.++.|++||+.+............. .....|. .+|.
T Consensus       719 ~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~-~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~  797 (1057)
T PLN02919        719 VFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLK-ELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGV  797 (1057)
T ss_pred             EEecCCccccCCCCccccccccCccEEEEeCCCC-EEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCc
Confidence            22211               11234577765432 35666677899999999865432211100000 0000111 0110


Q ss_pred             eeeecccccceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEEecC-----------CCCCCcCeEEEcCCCCEEEE
Q 001415          567 RTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDAD-----------GGLPASPRIRFNKDGCLLAV  635 (1082)
Q Consensus       567 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-----------~~~~~i~~~~~s~dg~~l~~  635 (1082)
                      .  ..........++++++|+.+++-..++.|++||..++.........           ........++++++|+++++
T Consensus       798 g--~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVa  875 (1057)
T PLN02919        798 G--SEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVA  875 (1057)
T ss_pred             h--hhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEE
Confidence            0  0000112346888999988888889999999999887665433210           11124578999999998888


Q ss_pred             EECCCcEEEEEecCC
Q 001415          636 STNDNGIKILATSDG  650 (1082)
Q Consensus       636 ~~~dg~i~iwd~~~~  650 (1082)
                      -+.++.|++||+.++
T Consensus       876 Dt~Nn~Irvid~~~~  890 (1057)
T PLN02919        876 DTNNSLIRYLDLNKG  890 (1057)
T ss_pred             ECCCCEEEEEECCCC
Confidence            889999999999876

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=98.93  E-value=1.5e-08  Score=103.42  Aligned_cols=165  Identities=18%  Similarity=0.175  Sum_probs=114.4

Q ss_pred             CceEEEEecCCCeEEEEEcCCCcEEEEEccccceeeeeceeeeccCCCCcccccccccCCCCceeEEEEecCCCeEEEE-
Q 001415          360 SPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVA-  438 (1082)
Q Consensus       360 ~v~~~~~spdg~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~-  438 (1082)
                      .++.+.++|+|+ |+|++..+....+.++.....    ..+.++...         +   ...-+++.|-.+.....++ 
T Consensus        64 a~~~~~~s~~~~-llAv~~~~K~~~~f~~~~~~~----~~kl~~~~~---------v---~~~~~ai~~~~~~~sv~v~d  126 (390)
T KOG3914|consen   64 APALVLTSDSGR-LVAVATSSKQRAVFDYRENPK----GAKLLDVSC---------V---PKRPTAISFIREDTSVLVAD  126 (390)
T ss_pred             cccccccCCCce-EEEEEeCCCceEEEEEecCCC----cceeeeEee---------c---ccCcceeeeeeccceEEEEe
Confidence            445566778888 688888887777777755433    111111110         1   1123344444444444444 


Q ss_pred             --eCCCeEEEEEccCCceeeEEEEeeccccCeeEEEecCCCCceEEEEEeCCCcEEEEEccCCceeEEe-ecCCcCeEEE
Q 001415          439 --YSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIF-EGHEAPVYSV  515 (1082)
Q Consensus       439 --~~d~~v~iwd~~~~~~~~~~~~~~~h~~~V~~l~fs~dg~~~~l~s~s~d~~i~vwd~~~~~~~~~~-~~h~~~v~~~  515 (1082)
                        +....+.+|....+.+.    .+-||-..++.++|+||++  +++++..|..|+|-....--.+..+ -||+..|..+
T Consensus       127 kagD~~~~di~s~~~~~~~----~~lGhvSml~dVavS~D~~--~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~i  200 (390)
T KOG3914|consen  127 KAGDVYSFDILSADSGRCE----PILGHVSMLLDVAVSPDDQ--FIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTI  200 (390)
T ss_pred             ecCCceeeeeecccccCcc----hhhhhhhhhheeeecCCCC--EEEEecCCceEEEEecCcccchhhhccccHhheeee
Confidence              44556667776655433    3669999999999999998  8999999999999887666555554 5799999999


Q ss_pred             eeeecCCceEEEEecCCCcEEEEecCCCCceeeec
Q 001415          516 CPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYE  550 (1082)
Q Consensus       516 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~  550 (1082)
                      ++.++   ..|+++|.|++|++||+.+++...++.
T Consensus       201 sl~~~---~~LlS~sGD~tlr~Wd~~sgk~L~t~d  232 (390)
T KOG3914|consen  201 SLTDN---YLLLSGSGDKTLRLWDITSGKLLDTCD  232 (390)
T ss_pred             eeccC---ceeeecCCCCcEEEEecccCCcccccc
Confidence            97543   579999999999999999988875444

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=98.87  E-value=3.9e-07  Score=100.92  Aligned_cols=114  Identities=12%  Similarity=0.312  Sum_probs=86.2

Q ss_pred             CCCceEEEEecCCCeEEEEEcC----CCcEEEEEccccceeeeeceeeeccCCCCcccccccccCCCCceeEEEEecCCC
Q 001415          358 GSSPMSMDFHPVQQTLLLVGTN----VGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGS  433 (1082)
Q Consensus       358 ~~~v~~~~~spdg~~llasgs~----dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~  433 (1082)
                      .+.-+-..|+|... ++|+++.    .|.|-||- ++|+......                 ..   -.+++++|.|..-
T Consensus        15 davsti~SWHPseP-lfAVA~fS~er~GSVtIfa-dtGEPqr~Vt-----------------~P---~hatSLCWHpe~~   72 (1416)
T KOG3617|consen   15 DAVSTISSWHPSEP-LFAVASFSPERGGSVTIFA-DTGEPQRDVT-----------------YP---VHATSLCWHPEEF   72 (1416)
T ss_pred             cccccccccCCCCc-eeEEEEecCCCCceEEEEe-cCCCCCcccc-----------------cc---eehhhhccChHHH
Confidence            34445567999998 5777754    47788874 4454322110                 11   1456799999999


Q ss_pred             eEEEEeCCCeEEEEEccCCceeeEEEEeeccccCeeEEEecCCCCceEEEEEeCCCcEEEEEccC
Q 001415          434 LFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATN  498 (1082)
Q Consensus       434 ~las~~~d~~v~iwd~~~~~~~~~~~~~~~h~~~V~~l~fs~dg~~~~l~s~s~d~~i~vwd~~~  498 (1082)
                      .||.|-.-|.+.+|...+.+.-.   ....|..+|..+.||++|.  .++|+..-|.|.+|....
T Consensus        73 vLa~gwe~g~~~v~~~~~~e~ht---v~~th~a~i~~l~wS~~G~--~l~t~d~~g~v~lwr~d~  132 (1416)
T KOG3617|consen   73 VLAQGWEMGVSDVQKTNTTETHT---VVETHPAPIQGLDWSHDGT--VLMTLDNPGSVHLWRYDV  132 (1416)
T ss_pred             HHhhccccceeEEEecCCceeee---eccCCCCCceeEEecCCCC--eEEEcCCCceeEEEEeee
Confidence            99999999999999988765332   4567999999999999999  899999999999998764

>PRK04043 tolB translocation protein TolB; Provisional

Probab=98.85  E-value=7.5e-07  Score=99.59  Aligned_cols=189  Identities=9%  Similarity=0.028  Sum_probs=121.7

Q ss_pred             CccEEEeecCCCe-EEEee-C---CeEEEEecCCCeeEEEECCCCCCeeEEEEecCCCcEEE-EEeCC--CcEEEEeccc
Q 001415          788 AVPCFALSKNDSY-VMSAS-G---GKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIA-IGMDD--SSIQIYNVRV  859 (1082)
Q Consensus       788 ~i~~l~~s~dg~~-l~~~s-d---g~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la-sg~~d--g~v~iwd~~~  859 (1082)
                      ......|||||+. ++..+ +   ..|.++|+.+++...... ..+......|+| |++.|+ +.+.+  ..|+++|+.+
T Consensus       189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~-~~g~~~~~~~SP-DG~~la~~~~~~g~~~Iy~~dl~~  266 (419)
T PRK04043        189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS-SQGMLVVSDVSK-DGSKLLLTMAPKGQPDIYLYDTNT  266 (419)
T ss_pred             CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec-CCCcEEeeEECC-CCCEEEEEEccCCCcEEEEEECCC
Confidence            5668899999985 55443 2   459999998887655443 455567788999 665554 44434  4688888877


Q ss_pred             ceeeeeecccccCEEEEEEeCCCCEEEEEeCC-C--cEEEEEcCCcccccceeeeccCCCCCCCCCCcEEEEcCCCcEEE
Q 001415          860 DEVKSKLKGHSKRITGLAFSHALNVLVSSGAD-S--QLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFL  936 (1082)
Q Consensus       860 ~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~D-g--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~  936 (1082)
                      ++. ..+..+........|+|||+.|+..+.. +  .|.+.|+.+++..+  +.  ..+.       ....|||||++|+
T Consensus       267 g~~-~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~r--lt--~~g~-------~~~~~SPDG~~Ia  334 (419)
T PRK04043        267 KTL-TQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQ--VV--FHGK-------NNSSVSTYKNYIV  334 (419)
T ss_pred             CcE-EEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEe--Cc--cCCC-------cCceECCCCCEEE
Confidence            764 4454444434456899999988776643 3  57777887755321  11  1111       1248999999998


Q ss_pred             EE-ec---------CeEEEEEccCcceeeeeccCCCCcceeEEEEcCCCceEEEeecC-Cc--EEEEecCC
Q 001415          937 VV-HE---------TQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLD-AT--VCVFSAAN  994 (1082)
Q Consensus       937 ~~-~d---------~~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~dg~~l~t~s~d-g~--v~vwd~~~  994 (1082)
                      .. ..         ..|.+.|+.++.... +...+   ......|||||++|+..+.+ +.  +.+.+++.
T Consensus       335 ~~~~~~~~~~~~~~~~I~v~d~~~g~~~~-LT~~~---~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g  401 (419)
T PRK04043        335 YSSRETNNEFGKNTFNLYLISTNSDYIRR-LTANG---VNQFPRFSSDGGSIMFIKYLGNQSALGIIRLNY  401 (419)
T ss_pred             EEEcCCCcccCCCCcEEEEEECCCCCeEE-CCCCC---CcCCeEECCCCCEEEEEEccCCcEEEEEEecCC
Confidence            83 22         267888888776533 33222   23357899999988777643 22  55556544

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=98.83  E-value=1.5e-06  Score=85.63  Aligned_cols=206  Identities=17%  Similarity=0.178  Sum_probs=136.9

Q ss_pred             EEeecCCCeEEEeeCCeEEEEecCCC--eeEEE---ECCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEecccceeeeee
Q 001415          792 FALSKNDSYVMSASGGKISLFNMMTF--KTMAT---FMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKL  866 (1082)
Q Consensus       792 l~~s~dg~~l~~~sdg~i~iwd~~~~--~~~~~---~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l  866 (1082)
                      ++.+.||++||+.-|..|.|=..++.  ..+.+   -+.....-+.++||| |+.+||.+...|+|++||+...++. .+
T Consensus         3 ~~~~~~Gk~lAi~qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSp-D~tlLa~a~S~G~i~vfdl~g~~lf-~I   80 (282)
T PF15492_consen    3 LALSSDGKLLAILQDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSP-DCTLLAYAESTGTIRVFDLMGSELF-VI   80 (282)
T ss_pred             eeecCCCcEEEEEeccEEEEEeccCCchheeEEEecCCCCCchheEEEECC-CCcEEEEEcCCCeEEEEecccceeE-Ec
Confidence            57789999999999988888765532  12222   222334568899999 9999999999999999998864432 33


Q ss_pred             cc-------cccCEEEEEEeCCC------CEEEEEeCCCcEEEEEcCCccccc---ceeeeccCCCCCCCCCCcEEEEcC
Q 001415          867 KG-------HSKRITGLAFSHAL------NVLVSSGADSQLCVWSSDGWEKQK---NRFLQIPTGRTPTAQSDTRVQFHQ  930 (1082)
Q Consensus       867 ~~-------h~~~V~~l~~s~d~------~~l~s~s~Dg~i~vwd~~~~~~~~---~~~~~~~~~~~~~~~~v~~~~fsp  930 (1082)
                      ..       -...|.+|.|.+-.      ..|+...-+|.++-|-+..+....   ..... +..+.+  .+|.++.++|
T Consensus        81 ~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfs-f~~~yp--~Gi~~~vy~p  157 (282)
T PF15492_consen   81 PPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFS-FSSHYP--HGINSAVYHP  157 (282)
T ss_pred             CcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEE-ecccCC--CceeEEEEcC
Confidence            21       23567778775432      246666678888877764321111   11111 112222  6789999999


Q ss_pred             CCcEEEEEe-----cC-------eEEEEEccCcceeee---------------------e-----c-cCCCCcceeEEEE
Q 001415          931 DQIHFLVVH-----ET-------QLAIFETTKLECVKQ---------------------W-----V-PRESSAPITHATF  971 (1082)
Q Consensus       931 dg~~l~~~~-----d~-------~i~iwd~~~~~~~~~---------------------~-----~-~~~h~~~i~~l~~  971 (1082)
                      ..++|+++.     ++       .+.-|.+-++...-.                     .     . .......|..|..
T Consensus       158 ~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSl  237 (282)
T PF15492_consen  158 KHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSL  237 (282)
T ss_pred             CCCEEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCccccccccccceeeccceeeeeccccCCCceEEEEE
Confidence            998888731     11       366666533221000                     0     0 0112567899999


Q ss_pred             cCCCceEEEeecCCcEEEEecCCceeeeeeC
Q 001415          972 SCDSQLVYACFLDATVCVFSAANLKLRCRIN 1002 (1082)
Q Consensus       972 s~dg~~l~t~s~dg~v~vwd~~~~~~~~~~~ 1002 (1082)
                      ||||+.||+...+|.|.+|++.+.++.....
T Consensus       238 SPdg~~La~ih~sG~lsLW~iPsL~~~~~W~  268 (282)
T PF15492_consen  238 SPDGSLLACIHFSGSLSLWEIPSLRLQRSWK  268 (282)
T ss_pred             CCCCCEEEEEEcCCeEEEEecCcchhhcccc
Confidence            9999999999999999999999999887765

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.81  E-value=3e-08  Score=104.08  Aligned_cols=249  Identities=11%  Similarity=0.111  Sum_probs=157.4

Q ss_pred             eecCCCCCceEEEEecCCCeEEEEEcCCCcEEEEEcccc-ceeeeeceeeeccCCCCcccccccccCCCCceeEEEEecC
Q 001415          353 RTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSR-ERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPD  431 (1082)
Q Consensus       353 ~~~~h~~~v~~~~~spdg~~llasgs~dg~i~iwd~~~~-~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spd  431 (1082)
                      ...+|+..|.+++--.+... +++++.|.+|++|.+... ..+.+.            ..+. .+..|+.+|.++.|-.|
T Consensus       730 nf~GH~~~iRai~AidNENS-FiSASkDKTVKLWSik~EgD~~~ts------------aCQf-TY~aHkk~i~~igfL~~  795 (1034)
T KOG4190|consen  730 NFTGHQEKIRAIAAIDNENS-FISASKDKTVKLWSIKPEGDEIGTS------------ACQF-TYQAHKKPIHDIGFLAD  795 (1034)
T ss_pred             cccCcHHHhHHHHhcccccc-eeeccCCceEEEEEeccccCccccc------------eeee-EhhhccCcccceeeeec
Confidence            45569999999876666553 889999999999998642 222210            0111 36789999999999999


Q ss_pred             CCeEEEEeCCCeEEEEEccCCceeeEEEEeeccccCeeEEEecCC-CCceEEEEEeCCCcEEEEEccCCceeEEee----
Q 001415          432 GSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHP-NKQLCVITCGDDKTIKVWDATNGAKQYIFE----  506 (1082)
Q Consensus       432 g~~las~~~d~~v~iwd~~~~~~~~~~~~~~~h~~~V~~l~fs~d-g~~~~l~s~s~d~~i~vwd~~~~~~~~~~~----  506 (1082)
                      -+++|++  ||.|.+||.--+..+.+...-..| +.+..+.--++ .+.++++.++...+|+++|.+.++-...++    
T Consensus       796 lr~i~Sc--D~giHlWDPFigr~Laq~~dapk~-~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna  872 (1034)
T KOG4190|consen  796 LRSIASC--DGGIHLWDPFIGRLLAQMEDAPKE-GAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNA  872 (1034)
T ss_pred             cceeeec--cCcceeecccccchhHhhhcCccc-CCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccC
Confidence            9999876  788999999887765432222222 23333333343 333355556889999999999887666554    


Q ss_pred             -cCCcCeEEEeeeecCCceEEEEecCCCcEEEEecCCCCceeeecCCCCceEEEEEccCCCeeeecccccceeEEEecCC
Q 001415          507 -GHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTT  585 (1082)
Q Consensus       507 -~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~i~~~~~~~~  585 (1082)
                       +..+.+.++++.+.  |+.++++-..|.|.+.|.+++.....+....-....++                      .|.
T Consensus       873 ~~Pna~~R~iaVa~~--GN~lAa~LSnGci~~LDaR~G~vINswrpmecdllqla----------------------aps  928 (1034)
T KOG4190|consen  873 PGPNALTRAIAVADK--GNKLAAALSNGCIAILDARNGKVINSWRPMECDLLQLA----------------------APS  928 (1034)
T ss_pred             CCCchheeEEEeccC--cchhhHHhcCCcEEEEecCCCceeccCCcccchhhhhc----------------------Cch
Confidence             33455778877654  46899999999999999988765544333222111111                      122


Q ss_pred             CCEEEEEeCCCeEEE-EECCCcceEEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEE
Q 001415          586 KNRFLAAGDDFSIKF-WDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILA  646 (1082)
Q Consensus       586 ~~~l~~~~~dg~i~i-wd~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~iwd  646 (1082)
                      ...++....|.++.+ |-...|......+....  +.  --.-.-|.-|+++.....+.+|.
T Consensus       929 dq~L~~saldHslaVnWhaldgimh~q~kpppe--pa--hflqsvgpSLV~a~~Gn~lgVYa  986 (1034)
T KOG4190|consen  929 DQALAQSALDHSLAVNWHALDGIMHLQDKPPPE--PA--HFLQSVGPSLVTAQNGNILGVYA  986 (1034)
T ss_pred             hHHHHhhcccceeEeeehhcCCeeeeccCCCCc--ch--hhhhccCceeEEeccCcEEEEEe
Confidence            234566667788888 87766655544432211  10  00111245566666666666664

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=98.78  E-value=1.3e-06  Score=84.20  Aligned_cols=237  Identities=13%  Similarity=0.086  Sum_probs=148.6

Q ss_pred             CeEEEee-CCeEEEEecCCCeeE-EEECCCCCCee---EEEEecCCCcEEEEEeCCCcEEEEecccceeeeeecccccCE
Q 001415          799 SYVMSAS-GGKISLFNMMTFKTM-ATFMPPPPAAT---FLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRI  873 (1082)
Q Consensus       799 ~~l~~~s-dg~i~iwd~~~~~~~-~~~~~~~~~v~---~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V  873 (1082)
                      .+||.|+ .|.+.+|...+.+.. .....+...|+   ..+-+   ..-+..++.|.++++.++..+.....+.-..-.+
T Consensus        85 ~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~---~~~~~i~sndht~k~~~~~~~s~~~~~h~~~~~~  161 (344)
T KOG4532|consen   85 VTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDL---KFPLNIASNDHTGKTMVVSGDSNKFAVHNQNLTQ  161 (344)
T ss_pred             cEEEeccccceeeeecccCcccceeeecccccchhhhhhhccc---ccceeeccCCcceeEEEEecCcccceeeccccce
Confidence            4677775 599999999865443 33333333332   22222   2235557788888888887654332222111238


Q ss_pred             EEEEEeCCCCEEEEEeCCCcEEEEEcCCcccccceeeeccCCCCCCCCCCcEEEEcCCCcEEEE-EecCeEEEEEccCcc
Q 001415          874 TGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFETTKLE  952 (1082)
Q Consensus       874 ~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~-~~d~~i~iwd~~~~~  952 (1082)
                      .++++++|++++++.+....|..|.++.......+.......     ..-.+..|+.....+|+ ..||.+.|||++...
T Consensus       162 ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~-----D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~  236 (344)
T KOG4532|consen  162 NSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTS-----DHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMA  236 (344)
T ss_pred             eeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccC-----CCceeeeeccCcceEEEEecCCcEEEEEecccc
Confidence            899999999999999999999999998743222221111111     23378899998888888 689999999998765


Q ss_pred             eeeeec---cCCCCcceeEEEEcCCCc--eEEEeecCCcEEEEecCCceeeeeeCCCeecCCCCCCCCceeeEEEEeCCC
Q 001415          953 CVKQWV---PRESSAPITHATFSCDSQ--LVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQE 1027 (1082)
Q Consensus       953 ~~~~~~---~~~h~~~i~~l~~s~dg~--~l~t~s~dg~v~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~~~~~~~d 1027 (1082)
                      ......   -+.|.+.+..+.||+-|.  +|+..-.-+.+.|-|+.+++-...+.+..-.-..|....+.  .-.|+. +
T Consensus       237 tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~if--gt~f~~-~  313 (344)
T KOG4532|consen  237 TPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIF--GTNFNN-E  313 (344)
T ss_pred             cchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecCccccccccccccc--cccccC-C
Confidence            543332   235899999999998665  35555556889999999999887776443332223222233  344554 3


Q ss_pred             CCeEEEEecCCcEEEEccCC
Q 001415         1028 PNEFALGLSDGGVHVFEPLE 1047 (1082)
Q Consensus      1028 ~~~l~s~~~dg~v~vW~~~~ 1047 (1082)
                      +.-+.+..++. +.-|++.+
T Consensus       314 n~s~~v~~e~~-~ae~ni~s  332 (344)
T KOG4532|consen  314 NESNDVKNELQ-GAEYNILS  332 (344)
T ss_pred             Ccccccccchh-hheeeccc
Confidence            44444444332 23444433

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=98.77  E-value=4e-06  Score=85.66  Aligned_cols=247  Identities=15%  Similarity=0.186  Sum_probs=150.8

Q ss_pred             CceEEEEecCCCeEEEEEcCCCc-EEEEEccccceeeeeceeeeccCCCCcccccccccCCCCceeEEEEecCCCeEEEE
Q 001415          360 SPMSMDFHPVQQTLLLVGTNVGD-IGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVA  438 (1082)
Q Consensus       360 ~v~~~~~spdg~~llasgs~dg~-i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~  438 (1082)
                      ....++.+|+....+|.+-.-|+ ..+||..+++.+....           +.....+.||      -+|||||++|.+.
T Consensus         6 RgH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~-----------a~~gRHFyGH------g~fs~dG~~LytT   68 (305)
T PF07433_consen    6 RGHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLW-----------APPGRHFYGH------GVFSPDGRLLYTT   68 (305)
T ss_pred             cccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEc-----------CCCCCEEecC------EEEcCCCCEEEEe
Confidence            34568889966667888887775 7899999998876421           1122236666      4799999999986


Q ss_pred             e-----CCCeEEEEEccCCceeeEEEEeeccccCeeEEEecCCCCceEEEEEe----------------CCCcEEEEEcc
Q 001415          439 Y-----SRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCG----------------DDKTIKVWDAT  497 (1082)
Q Consensus       439 ~-----~d~~v~iwd~~~~~~~~~~~~~~~h~~~V~~l~fs~dg~~~~l~s~s----------------~d~~i~vwd~~  497 (1082)
                      -     ..|.|-|||...  .+.+..++..|.-.-..+.+.|||+.+.++-|+                .+-++.+-|..
T Consensus        69 End~~~g~G~IgVyd~~~--~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~  146 (305)
T PF07433_consen   69 ENDYETGRGVIGVYDAAR--GYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDAR  146 (305)
T ss_pred             ccccCCCcEEEEEEECcC--CcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecC
Confidence            3     358899999993  234445788887777889999999864444443                23457777888


Q ss_pred             CCceeEE--e--ecCCcCeEEEeeeecCCceEEEEecCCCcEEEEecCCCCceeeecCCCCceEEEEEccCCCeeeeccc
Q 001415          498 NGAKQYI--F--EGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFR  573 (1082)
Q Consensus       498 ~~~~~~~--~--~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~  573 (1082)
                      +|+.+..  +  .-|...+..+++..++  ..++..-..|.-.     ...++.-....+.....+...++..    ..-
T Consensus       147 sG~ll~q~~Lp~~~~~lSiRHLa~~~~G--~V~~a~Q~qg~~~-----~~~PLva~~~~g~~~~~~~~p~~~~----~~l  215 (305)
T PF07433_consen  147 SGALLEQVELPPDLHQLSIRHLAVDGDG--TVAFAMQYQGDPG-----DAPPLVALHRRGGALRLLPAPEEQW----RRL  215 (305)
T ss_pred             CCceeeeeecCccccccceeeEEecCCC--cEEEEEecCCCCC-----ccCCeEEEEcCCCcceeccCChHHH----Hhh
Confidence            8888766  4  3377788888875443  3333322222100     0000110000111111111111000    011


Q ss_pred             ccceeEEEecCCCCEEEEEe-CCCeEEEEECCCcceEEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcE
Q 001415          574 KRSLGVVQFDTTKNRFLAAG-DDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGI  642 (1082)
Q Consensus       574 ~~~i~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i  642 (1082)
                      .+.+.+++++.++..+++.+ .-+.+.+||..+++.+......    .++.++-.+++ ++++.+ .|.+
T Consensus       216 ~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~l~----D~cGva~~~~~-f~~ssG-~G~~  279 (305)
T PF07433_consen  216 NGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSVPLP----DACGVAPTDDG-FLVSSG-QGQL  279 (305)
T ss_pred             CCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeeccccC----ceeeeeecCCc-eEEeCC-CccE
Confidence            23566777888877776655 6788999999999998877644    35667777776 554443 4544

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.76  E-value=4.5e-05  Score=73.66  Aligned_cols=145  Identities=9%  Similarity=0.006  Sum_probs=95.6

Q ss_pred             EEecCCCCceEEEEEeCCCcEEEEEccCCceeEEeecCCcCeEEEeeeecCCceEEEEecCCCcEEEEecCCCCceeeec
Q 001415          471 IAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYE  550 (1082)
Q Consensus       471 l~fs~dg~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~  550 (1082)
                      +...+|.+. +++.|+..+.+.--|..+|+.+..-. -..++.+-+.. -+  ++++.|+..|.+.+-+..++.+...+.
T Consensus        16 LVV~~dskT-~v~igSHs~~~~avd~~sG~~~We~i-lg~RiE~sa~v-vg--dfVV~GCy~g~lYfl~~~tGs~~w~f~   90 (354)
T KOG4649|consen   16 LVVCNDSKT-LVVIGSHSGIVIAVDPQSGNLIWEAI-LGVRIECSAIV-VG--DFVVLGCYSGGLYFLCVKTGSQIWNFV   90 (354)
T ss_pred             EEEecCCce-EEEEecCCceEEEecCCCCcEEeehh-hCceeeeeeEE-EC--CEEEEEEccCcEEEEEecchhheeeee
Confidence            344456665 78889999999999999998875432 22333333322 13  479999999999999999887766554


Q ss_pred             CCCCceEEEEEccCCCeeeecccccceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEEecCCCCCCcCeEEEcCCC
Q 001415          551 APGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDG  630 (1082)
Q Consensus       551 ~~~~~v~~~~~s~d~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~dg  630 (1082)
                      ..+.--.                     ....++++..+.+++.|+..+..|..+..++...+..+..  ..+-++.|-.
T Consensus        91 ~~~~vk~---------------------~a~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~--f~sP~i~~g~  147 (354)
T KOG4649|consen   91 ILETVKV---------------------RAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGT--FVSPVIAPGD  147 (354)
T ss_pred             ehhhhcc---------------------ceEEcCCCceEEEecCCCcEEEecccccceEEecccCCce--eccceecCCC
Confidence            3322111                     1234455668999999999999999999999887766552  3344556623


Q ss_pred             CEEEEEECCCcEE
Q 001415          631 CLLAVSTNDNGIK  643 (1082)
Q Consensus       631 ~~l~~~~~dg~i~  643 (1082)
                      ..|+.+...|.+.
T Consensus       148 ~sly~a~t~G~vl  160 (354)
T KOG4649|consen  148 GSLYAAITAGAVL  160 (354)
T ss_pred             ceEEEEeccceEE
Confidence            3344444455543

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=98.76  E-value=7.9e-06  Score=83.59  Aligned_cols=208  Identities=14%  Similarity=0.095  Sum_probs=143.1

Q ss_pred             CccEEEeec-CCCeEEEeeC-C-eEEEEecCCCeeEEEECCCCCCe--eEEEEecCCCcEEEEEeC-----CCcEEEEec
Q 001415          788 AVPCFALSK-NDSYVMSASG-G-KISLFNMMTFKTMATFMPPPPAA--TFLAFHPQDNNIIAIGMD-----DSSIQIYNV  857 (1082)
Q Consensus       788 ~i~~l~~s~-dg~~l~~~sd-g-~i~iwd~~~~~~~~~~~~~~~~v--~~l~~sp~~~~~lasg~~-----dg~v~iwd~  857 (1082)
                      ....++.+| ++..++.+.. | ...+||..+++....+....+.-  -.-+||+ ||++|++.-.     .|.|-|||.
T Consensus         6 RgH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~-dG~~LytTEnd~~~g~G~IgVyd~   84 (305)
T PF07433_consen    6 RGHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSP-DGRLLYTTENDYETGRGVIGVYDA   84 (305)
T ss_pred             cccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcC-CCCEEEEeccccCCCcEEEEEEEC
Confidence            345678888 5556666653 4 48999999999998887655543  3578999 8888887543     579999999


Q ss_pred             c-cceeeeeecccccCEEEEEEeCCCCEEEEEeC------------------CCcEEEEEcCCcccccceeeeccCCCCC
Q 001415          858 R-VDEVKSKLKGHSKRITGLAFSHALNVLVSSGA------------------DSQLCVWSSDGWEKQKNRFLQIPTGRTP  918 (1082)
Q Consensus       858 ~-~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~------------------Dg~i~vwd~~~~~~~~~~~~~~~~~~~~  918 (1082)
                      . +.+.+.++..|.-.-..+.+.|||+.|+.+-.                  +..+..-|..+++......+.. .-+. 
T Consensus        85 ~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~-~~~~-  162 (305)
T PF07433_consen   85 ARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPP-DLHQ-  162 (305)
T ss_pred             cCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCc-cccc-
Confidence            9 66788888887766678889999988887622                  2235555666665433222211 1122 


Q ss_pred             CCCCCcEEEEcCCCcEEEEEe-cC-------eEEEEEccCcceeeeeccC-----CCCcceeEEEEcCCCceEEEee-cC
Q 001415          919 TAQSDTRVQFHQDQIHFLVVH-ET-------QLAIFETTKLECVKQWVPR-----ESSAPITHATFSCDSQLVYACF-LD  984 (1082)
Q Consensus       919 ~~~~v~~~~fspdg~~l~~~~-d~-------~i~iwd~~~~~~~~~~~~~-----~h~~~i~~l~~s~dg~~l~t~s-~d  984 (1082)
                        .++..+++.++|..++... .+       -+.+++.  ++.+..+...     .-..-+-+|+++++|.++++++ .-
T Consensus       163 --lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~--g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrG  238 (305)
T PF07433_consen  163 --LSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRR--GGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRG  238 (305)
T ss_pred             --cceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcC--CCcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCC
Confidence              5689999999999887742 11       2444443  3323322211     1246789999999999886665 67


Q ss_pred             CcEEEEecCCceeeeeeC
Q 001415          985 ATVCVFSAANLKLRCRIN 1002 (1082)
Q Consensus       985 g~v~vwd~~~~~~~~~~~ 1002 (1082)
                      |.+.+||..+++++....
T Consensus       239 g~~~~~d~~tg~~~~~~~  256 (305)
T PF07433_consen  239 GRVAVWDAATGRLLGSVP  256 (305)
T ss_pred             CEEEEEECCCCCEeeccc
Confidence            889999999999997665

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=98.76  E-value=8.6e-08  Score=98.02  Aligned_cols=158  Identities=13%  Similarity=0.118  Sum_probs=106.8

Q ss_pred             EEEEEEeCCCCEEEEEeCCCcEEEEEcCCcccccceeeeccCCCCCCCCCCcEEEEcCCCcEEEE----EecCeEEEEEc
Q 001415          873 ITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV----VHETQLAIFET  948 (1082)
Q Consensus       873 V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~----~~d~~i~iwd~  948 (1082)
                      +..+..++++++||.+..+....++++..... ..++.......    ..-+.+.|-.+......    +....+.+|..
T Consensus        65 ~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~-~~kl~~~~~v~----~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~  139 (390)
T KOG3914|consen   65 PALVLTSDSGRLVAVATSSKQRAVFDYRENPK-GAKLLDVSCVP----KRPTAISFIREDTSVLVADKAGDVYSFDILSA  139 (390)
T ss_pred             ccccccCCCceEEEEEeCCCceEEEEEecCCC-cceeeeEeecc----cCcceeeeeeccceEEEEeecCCceeeeeecc
Confidence            34456677888888888777766777665432 12222222211    12355666665554444    23356777776


Q ss_pred             cCcceeeeeccCCCCcceeEEEEcCCCceEEEeecCCcEEEEecCCceeeeeeCCCeecCCCCCCCCceeeEEEEeCCCC
Q 001415          949 TKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEP 1028 (1082)
Q Consensus       949 ~~~~~~~~~~~~~h~~~i~~l~~s~dg~~l~t~s~dg~v~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~~~~~~~d~ 1028 (1082)
                      ..+.+...+   ||-+.++.++||||+++|+++..|..|+|-.+..--.+..+.      -|| .+-|..+++  -  ++
T Consensus       140 ~~~~~~~~l---GhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~Iesfc------lGH-~eFVS~isl--~--~~  205 (390)
T KOG3914|consen  140 DSGRCEPIL---GHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFC------LGH-KEFVSTISL--T--DN  205 (390)
T ss_pred             cccCcchhh---hhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhc------ccc-Hhheeeeee--c--cC
Confidence            666655443   899999999999999999999999999998877665554433      255 333443334  3  46


Q ss_pred             CeEEEEecCCcEEEEccCCCC
Q 001415         1029 NEFALGLSDGGVHVFEPLESE 1049 (1082)
Q Consensus      1029 ~~l~s~~~dg~v~vW~~~~~~ 1049 (1082)
                      +.|++||.|++|++||+.+|.
T Consensus       206 ~~LlS~sGD~tlr~Wd~~sgk  226 (390)
T KOG3914|consen  206 YLLLSGSGDKTLRLWDITSGK  226 (390)
T ss_pred             ceeeecCCCCcEEEEecccCC
Confidence            789999999999999999998

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=98.74  E-value=2.3e-07  Score=101.33  Aligned_cols=302  Identities=14%  Similarity=0.171  Sum_probs=183.9

Q ss_pred             cCCCCCceEEEEecCCCeEEEEEcCCCcEEEEEccccceeeeeceeeeccCCCCcccccccccCCCCceeEEEEecCC--
Q 001415          355 LNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDG--  432 (1082)
Q Consensus       355 ~~h~~~v~~~~~spdg~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg--  432 (1082)
                      +.-..++.++.++|.|+- +|.++.-|. .+-|+...-...+     |            +..-..-.|-.+.|||..  
T Consensus        21 l~v~~~~~a~si~p~grd-i~lAsr~gl-~i~dld~p~~ppr-----~------------l~h~tpw~vad~qws~h~a~   81 (1081)
T KOG0309|consen   21 LKVDGGFNAVSINPSGRD-IVLASRQGL-YIIDLDDPFTPPR-----W------------LHHITPWQVADVQWSPHPAK   81 (1081)
T ss_pred             EEecCcccceeeccccch-hhhhhhcCe-EEEeccCCCCCce-----e------------eeccCcchhcceecccCCCC
Confidence            445688999999999996 777765554 3445543211110     0            011112246677888733  


Q ss_pred             CeEEEEeCCCeEEEEEccCCceeeEEEEeeccccCeeEEEecCCCCceEEEEEeCCCcEEEEEccCC-ceeEEeecCCcC
Q 001415          433 SLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNG-AKQYIFEGHEAP  511 (1082)
Q Consensus       433 ~~las~~~d~~v~iwd~~~~~~~~~~~~~~~h~~~V~~l~fs~dg~~~~l~s~s~d~~i~vwd~~~~-~~~~~~~~h~~~  511 (1082)
                      .+-++......-.+|++.....-...+.+.||...|+.+.|.|.... ++++++.|-.+..||+++. ..+..+..-...
T Consensus        82 ~~wiVsts~qkaiiwnlA~ss~~aIef~lhghsraitd~n~~~q~pd-Vlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~  160 (1081)
T KOG0309|consen   82 PYWIVSTSNQKAIIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPD-VLATCSVDTYVHAWDMRSPHRPFYSTSSWRSA  160 (1081)
T ss_pred             ceeEEecCcchhhhhhhhcCCccceEEEEecCccceeccccCCCCCc-ceeeccccccceeeeccCCCcceeeeeccccc
Confidence            34444555566789998755444444568899999999999998876 8999999999999999875 455555544455


Q ss_pred             eEEEeeeecCCceEEEEecCCCcEEEEecCCCCce-eeecCCCCceEEEEEccCCCeeeecccccceeEEEecCCCCEEE
Q 001415          512 VYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSR-VDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFL  590 (1082)
Q Consensus       512 v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~-~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~i~~~~~~~~~~~l~  590 (1082)
                      -..+.|+....  .+.+.+..+.|++||.+.+... ..+..+...+..+.|..--                    ...+.
T Consensus       161 asqVkwnyk~p--~vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~--------------------~s~~~  218 (1081)
T KOG0309|consen  161 ASQVKWNYKDP--NVLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFK--------------------YSEIM  218 (1081)
T ss_pred             CceeeecccCc--chhhhccCCceEEEeccCCCcceEEecccceeeehHHHhhhh--------------------hhhhc
Confidence            66778876542  3555566778999999875543 3455554455554443221                    12477


Q ss_pred             EEeCCCeEEEEECCCcceEEEEecCCCCCCcCeEEEcCC--CCEEEEEEC---------CCcEEEEEecCCccceeeccc
Q 001415          591 AAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKD--GCLLAVSTN---------DNGIKILATSDGIRLLRTFEN  659 (1082)
Q Consensus       591 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~d--g~~l~~~~~---------dg~i~iwd~~~~~~~~~~~~~  659 (1082)
                      +.+.||+|+.||............... .++..-.+.|=  |.++.-.-.         +.....|+..++.+.+..+.+
T Consensus       219 s~~~d~tvkfw~y~kSt~e~~~~vtt~-~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~G  297 (1081)
T KOG0309|consen  219 SSSNDGTVKFWDYSKSTTESKRTVTTN-FPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVG  297 (1081)
T ss_pred             ccCCCCceeeecccccccccceecccc-CcceeccccccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecC
Confidence            889999999999864332221111111 23455555553  322222111         222334555566677888888


Q ss_pred             ccccccccccccCCC---CccccCCCCceeeeccCCceeEEEecc
Q 001415          660 LAYDASRTSENSKNG---DVRSLADVKPRITEESNDKSKVWKLTE  701 (1082)
Q Consensus       660 ~~~~~~~~~~~~~~~---~~~~s~~~~~l~~~~~d~~i~iw~~~~  701 (1082)
                      |...+..  .-|...   +.-.....=.|++-+.|.++++|.+..
T Consensus       298 H~D~V~e--FlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~~  340 (1081)
T KOG0309|consen  298 HDDVVLE--FLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPIDS  340 (1081)
T ss_pred             cchHHHH--HhhhhcccccCCCCccceeEEEeecCCceEeeeccH
Confidence            8876542  111110   000111222578999999999999875

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=98.71  E-value=1.2e-05  Score=90.66  Aligned_cols=319  Identities=12%  Similarity=0.077  Sum_probs=169.6

Q ss_pred             eEEEEecCCCcEEEEecCCCCceeeecCCCCceEEEEEccC-CCeeeecccccceeEEEecCCCCEEEEEeCCCeEEEEE
Q 001415          524 QFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSAD-GTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWD  602 (1082)
Q Consensus       524 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d-~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd  602 (1082)
                      ..+++++.++.+..+|.++++...........  . .++.. +..        .......  .+..++.++.+|.+..+|
T Consensus        70 ~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~--~-~~~~~~~~~--------~~~~~~v--~~~~v~v~~~~g~l~ald  136 (394)
T PRK11138         70 NKVYAADRAGLVKALDADTGKEIWSVDLSEKD--G-WFSKNKSAL--------LSGGVTV--AGGKVYIGSEKGQVYALN  136 (394)
T ss_pred             CEEEEECCCCeEEEEECCCCcEeeEEcCCCcc--c-ccccccccc--------cccccEE--ECCEEEEEcCCCEEEEEE
Confidence            36777778888888888887776655443210  0 00000 000        0000011  234677888899999999


Q ss_pred             CCCcceEEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEecCCccceeecccccccccccccccCCCCccccCCC
Q 001415          603 MDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKNGDVRSLADV  682 (1082)
Q Consensus       603 ~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~  682 (1082)
                      ..+|+.+.........  ..+...  .+..++++..++.+..+|..+|+.....-.....      ......... ...+
T Consensus       137 ~~tG~~~W~~~~~~~~--~ssP~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~------~~~~~~~sP-~v~~  205 (394)
T PRK11138        137 AEDGEVAWQTKVAGEA--LSRPVV--SDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPS------LTLRGESAP-ATAF  205 (394)
T ss_pred             CCCCCCcccccCCCce--ecCCEE--ECCEEEEECCCCEEEEEEccCCCEeeeecCCCCc------ccccCCCCC-EEEC
Confidence            9999998877654321  111111  2456777888999999999999544332211100      000000000 1123


Q ss_pred             CceeeeccCCceeEEEecccCCCCccccccccCcccccceeEEEEcc--CCceeeecccCCeEEEeeccccccCCCCCcc
Q 001415          683 KPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTN--SGNAILALASNAIHLLWKWQRTERNSSGKAT  760 (1082)
Q Consensus       683 ~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~--~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~  760 (1082)
                      ..++.+..++.+..++..++...-..................+..+|  .+..+++++.++.+..+|...++        
T Consensus       206 ~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~--------  277 (394)
T PRK11138        206 GGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQ--------  277 (394)
T ss_pred             CEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCC--------
Confidence            34666777788877777654332221110000000000000111111  23456666777777777654321        


Q ss_pred             cccCccccCCCCcceeecccCCCCCCCCccEEEeecCCCeEEEeeCCeEEEEecCCCeeEEEECCCC-CCeeEEEEecCC
Q 001415          761 ASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPP-PAATFLAFHPQD  839 (1082)
Q Consensus       761 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~l~~~sdg~i~iwd~~~~~~~~~~~~~~-~~v~~l~~sp~~  839 (1082)
                           .+|....+           .   ...+.. .++.+++...+|.+..+|..+++.+....... ....+..+.  +
T Consensus       278 -----~~W~~~~~-----------~---~~~~~~-~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v~--~  335 (394)
T PRK11138        278 -----IVWKREYG-----------S---VNDFAV-DGGRIYLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVLY--N  335 (394)
T ss_pred             -----EEEeecCC-----------C---ccCcEE-ECCEEEEEcCCCeEEEEECCCCcEEEcccccCCCcccCCEEE--C
Confidence                 23432211           0   111122 24444445557999999999988765543211 122333332  3


Q ss_pred             CcEEEEEeCCCcEEEEecccceeeeeecccccCEEE-EEEeCCCCEEEEEeCCCcEEEEEc
Q 001415          840 NNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITG-LAFSHALNVLVSSGADSQLCVWSS  899 (1082)
Q Consensus       840 ~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~-l~~s~d~~~l~s~s~Dg~i~vwd~  899 (1082)
                       ..|+.++.||.|+..|..+|+.+...+-....+.+ ..+.  +..|+.++.||.|..++.
T Consensus       336 -g~l~v~~~~G~l~~ld~~tG~~~~~~~~~~~~~~s~P~~~--~~~l~v~t~~G~l~~~~~  393 (394)
T PRK11138        336 -GYLVVGDSEGYLHWINREDGRFVAQQKVDSSGFLSEPVVA--DDKLLIQARDGTVYAITR  393 (394)
T ss_pred             -CEEEEEeCCCEEEEEECCCCCEEEEEEcCCCcceeCCEEE--CCEEEEEeCCceEEEEeC
Confidence             36677899999999999999988776543333332 2232  447888899998887754

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=98.70  E-value=1.3e-05  Score=79.21  Aligned_cols=228  Identities=13%  Similarity=0.196  Sum_probs=129.1

Q ss_pred             eEEEEecCCCeEEEEEcCCCcEEEEEccccceeeeeceeeeccCCCCcccccccccCCCCceeEEEEecCCCeEEEEeCC
Q 001415          362 MSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSR  441 (1082)
Q Consensus       362 ~~~~~spdg~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d  441 (1082)
                      |.++.+.||+ +||+ -.|..|.|=..+..-.-....              ..+.+...-.=.-++||||+..||.+...
T Consensus         1 W~~~~~~~Gk-~lAi-~qd~~iEiRsa~Ddf~si~~k--------------cqVpkD~~PQWRkl~WSpD~tlLa~a~S~   64 (282)
T PF15492_consen    1 WHLALSSDGK-LLAI-LQDQCIEIRSAKDDFSSIIGK--------------CQVPKDPNPQWRKLAWSPDCTLLAYAEST   64 (282)
T ss_pred             CceeecCCCc-EEEE-EeccEEEEEeccCCchheeEE--------------EecCCCCCchheEEEECCCCcEEEEEcCC
Confidence            4578899999 4554 357777776665432111000              01233444456789999999999999999


Q ss_pred             CeEEEEEccCCceee--EEEEeec-cccCeeEEEecCCC-----CceEEEEEeCCCcEEEEEccCC-----ceeEEee--
Q 001415          442 HIVQIYSYHGGDEVR--QHLEIDA-HVGGVNDIAFSHPN-----KQLCVITCGDDKTIKVWDATNG-----AKQYIFE--  506 (1082)
Q Consensus       442 ~~v~iwd~~~~~~~~--~~~~~~~-h~~~V~~l~fs~dg-----~~~~l~s~s~d~~i~vwd~~~~-----~~~~~~~--  506 (1082)
                      |+|+++|+.+.....  +...+.+ -...|..+.|.+--     .. -|+.-..+|.++=+-+..|     +..+++.  
T Consensus        65 G~i~vfdl~g~~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~-ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~  143 (282)
T PF15492_consen   65 GTIRVFDLMGSELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSY-ELLVINYRGQLRSYLVSVGTNQGYQENHSFSFS  143 (282)
T ss_pred             CeEEEEecccceeEEcCcccccCCccccceeeeEeeccccccccce-eEEEEeccceeeeEEEEcccCCcceeeEEEEec
Confidence            999999998754321  1001111 23467777775432     11 2444556777776665322     3333433  


Q ss_pred             -cCCcCeEEEeeeecCCceEEEEecC-CCc----------EEEEecCCCCceeeecCCCCceEEEEEccCCCeeeecccc
Q 001415          507 -GHEAPVYSVCPHHKENIQFIFSTAL-DGK----------IKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRK  574 (1082)
Q Consensus       507 -~h~~~v~~~~~~~~~~~~~l~s~~~-dg~----------i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~  574 (1082)
                       .+...|.++.+++..  ++|+.|+. ...          +..|.+-+..                  |..         
T Consensus       144 ~~yp~Gi~~~vy~p~h--~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~------------------Pyy---------  194 (282)
T PF15492_consen  144 SHYPHGINSAVYHPKH--RLLLVGGCEQNQDGMSKASSCGLTAWRILSDS------------------PYY---------  194 (282)
T ss_pred             ccCCCceeEEEEcCCC--CEEEEeccCCCCCccccccccCceEEEEcCCC------------------CcE---------
Confidence             246789999988765  45555543 221          2222211110                  110         


Q ss_pred             cceeEEEecCCCCEEEEEeCCCe------EEEEECCCcceEEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEec
Q 001415          575 RSLGVVQFDTTKNRFLAAGDDFS------IKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATS  648 (1082)
Q Consensus       575 ~~i~~~~~~~~~~~l~~~~~dg~------i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~iwd~~  648 (1082)
                                  . .++..+|+.      ..+|.+-+.+.....  ......|..|..||||+.|++...+|.|.+|++.
T Consensus       195 ------------k-~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~--~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iP  259 (282)
T PF15492_consen  195 ------------K-QVTSSEDDITASSKRRGLLRIPSFKFFSRQ--GQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIP  259 (282)
T ss_pred             ------------E-EccccCccccccccccceeeccceeeeecc--ccCCCceEEEEECCCCCEEEEEEcCCeEEEEecC
Confidence                        0 111121111      223443332222111  1223468999999999999999999999999987


Q ss_pred             CC
Q 001415          649 DG  650 (1082)
Q Consensus       649 ~~  650 (1082)
                      +-
T Consensus       260 sL  261 (282)
T PF15492_consen  260 SL  261 (282)
T ss_pred             cc
Confidence            65

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=98.70  E-value=9.6e-07  Score=86.65  Aligned_cols=235  Identities=15%  Similarity=0.247  Sum_probs=138.2

Q ss_pred             CcCeEEEcCCCCEEEEEECCCcEEEEEecCCccc----eeecccccccccccccccCCCCccccCCCCceeeeccCCcee
Q 001415          620 ASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRL----LRTFENLAYDASRTSENSKNGDVRSLADVKPRITEESNDKSK  695 (1082)
Q Consensus       620 ~i~~~~~s~dg~~l~~~~~dg~i~iwd~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~  695 (1082)
                      .|+++.|...|.||++|...|.|.+|.......+    ...+++|...       |           .+           
T Consensus        28 ~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~E-------F-----------DY-----------   78 (460)
T COG5170          28 KITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELE-------F-----------DY-----------   78 (460)
T ss_pred             eeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccc-------h-----------hh-----------
Confidence            5889999999999999999999999976544211    1122222111       1           00           


Q ss_pred             EEEecccCCCCccccccccCcccccceeEEEEccCC--ceeeecccCCeEEEeecccccc-------------CCCCCc-
Q 001415          696 VWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSG--NAILALASNAIHLLWKWQRTER-------------NSSGKA-  759 (1082)
Q Consensus       696 iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~--~~l~~~~~d~~i~iw~~~~~~~-------------~~~~~~-  759 (1082)
                                  +..+.     -...|..+.|..++  ..++..+.|.+|++|.+.....             .+.+.. 
T Consensus        79 ------------LkSle-----ieEKin~I~w~~~t~r~hFLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~  141 (460)
T COG5170          79 ------------LKSLE-----IEEKINAIEWFDDTGRNHFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPL  141 (460)
T ss_pred             ------------hhhcc-----HHHHhhheeeecCCCcceEEEecCCceeeeeeeecccchhhhccccccccccccCCCc
Confidence                        00111     23355666665544  3467777888888888765421             111111 


Q ss_pred             ccccCccccCCCCcc-eee-c--ccCCCCCCCCccEEEeecCCCeEEEeeCCeEEEEecCCCe---eEEEECCCCC----
Q 001415          760 TASVAPQLWQPPSGI-MMT-N--DVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFK---TMATFMPPPP----  828 (1082)
Q Consensus       760 ~~~~~~~~~~~~~~~-~~~-~--~~~~~~~~~~i~~l~~s~dg~~l~~~sdg~i~iwd~~~~~---~~~~~~~~~~----  828 (1082)
                      .....+++-...... .+. .  .+....|...+.++.|..|...++++.+=+|.+|+++--.   .+..++.|..    
T Consensus       142 ~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~et~lSaDdLrINLWnl~i~D~sFnIVDiKP~nmeeLt  221 (460)
T COG5170         142 TSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDKETLLSADDLRINLWNLEIIDGSFNIVDIKPHNMEELT  221 (460)
T ss_pred             CCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCchheeeeccceeeeeccccccCCceEEEeccCccHHHHH
Confidence            111111111111111 010 0  1122358888999999999999999999999999987322   2233444432    


Q ss_pred             -CeeEEEEecCCCcEEEEEeCCCcEEEEecccceee----------------eeecccccCEEEEEEeCCCCEEEEEeCC
Q 001415          829 -AATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVK----------------SKLKGHSKRITGLAFSHALNVLVSSGAD  891 (1082)
Q Consensus       829 -~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~----------------~~l~~h~~~V~~l~~s~d~~~l~s~s~D  891 (1082)
                       -|++..|+|....++...+..|.|++-|++...+-                .-+.+-.+.|..+.|+++|+++++-+. 
T Consensus       222 eVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-  300 (460)
T COG5170         222 EVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-  300 (460)
T ss_pred             HHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-
Confidence             38899999977788888889999999998743210                001122345666667776666665443 


Q ss_pred             CcEEEEEcCC
Q 001415          892 SQLCVWSSDG  901 (1082)
Q Consensus       892 g~i~vwd~~~  901 (1082)
                      -+|++||+.-
T Consensus       301 ltvkiwDvnm  310 (460)
T COG5170         301 LTVKIWDVNM  310 (460)
T ss_pred             ceEEEEeccc
Confidence            3466776654

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=98.68  E-value=2.2e-07  Score=90.97  Aligned_cols=263  Identities=14%  Similarity=0.185  Sum_probs=159.4

Q ss_pred             CCCceeEEEEecCCCeEEEEeCCCeEEEEEccCCc--eeeEEEEeecccc------------CeeEEEecCCCCceEEEE
Q 001415          419 PGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGD--EVRQHLEIDAHVG------------GVNDIAFSHPNKQLCVIT  484 (1082)
Q Consensus       419 h~~~V~~l~~spdg~~las~~~d~~v~iwd~~~~~--~~~~~~~~~~h~~------------~V~~l~fs~dg~~~~l~s  484 (1082)
                      ....|+++.|...|.|||+|...|.|.+|.-....  ..+-..++++|..            .|..+.|..++..-.++.
T Consensus        25 ead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLl  104 (460)
T COG5170          25 EADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLL  104 (460)
T ss_pred             ccceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEE
Confidence            45689999999999999999999999999765432  1222224555543            478888887766545666


Q ss_pred             EeCCCcEEEEEccCCc-------------------ee-----------------------EEe-ecCCcCeEEEeeeecC
Q 001415          485 CGDDKTIKVWDATNGA-------------------KQ-----------------------YIF-EGHEAPVYSVCPHHKE  521 (1082)
Q Consensus       485 ~s~d~~i~vwd~~~~~-------------------~~-----------------------~~~-~~h~~~v~~~~~~~~~  521 (1082)
                      .+.|++|++|.+....                   ++                       +.. ..|.-.+.++.|..+.
T Consensus       105 stNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~  184 (460)
T COG5170         105 STNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDK  184 (460)
T ss_pred             ecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCch
Confidence            6789999999875431                   00                       000 2455566777765433


Q ss_pred             CceEEEEecCCCcEEEEecCCCCceeeecCCCCceEEEEEccCCCeeeecccccceeEEEecCCC-CEEEEEeCCCeEEE
Q 001415          522 NIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTK-NRFLAAGDDFSIKF  600 (1082)
Q Consensus       522 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~i  600 (1082)
                        ..+++ +.|=.|.+|+++-......+         +.+-|....    .-...+++..|+|.. +.+.-.+..|.|++
T Consensus       185 --et~lS-aDdLrINLWnl~i~D~sFnI---------VDiKP~nme----eLteVItSaeFhp~~cn~fmYSsSkG~Ikl  248 (460)
T COG5170         185 --ETLLS-ADDLRINLWNLEIIDGSFNI---------VDIKPHNME----ELTEVITSAEFHPEMCNVFMYSSSKGEIKL  248 (460)
T ss_pred             --heeee-ccceeeeeccccccCCceEE---------EeccCccHH----HHHHHHhhcccCHhHcceEEEecCCCcEEe
Confidence              44554 45778999988754433211         111111100    000133444455543 34556778899999


Q ss_pred             EECCCcce------EEEE--ecC------CCCCCcCeEEEcCCCCEEEEEECCCcEEEEEecCCccceeecccccccccc
Q 001415          601 WDMDSVQL------LTSI--DAD------GGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASR  666 (1082)
Q Consensus       601 wd~~~~~~------~~~~--~~~------~~~~~i~~~~~s~dg~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~  666 (1082)
                      -|++...+      +...  .+.      +-...|..+.|+++|+++++-+. -++++||.+..+.+++++.-|......
T Consensus       249 ~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~pikTi~~h~~l~~~  327 (460)
T COG5170         249 NDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNPIKTIPMHCDLMDE  327 (460)
T ss_pred             hhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccccCCceeechHHHHHHH
Confidence            99874321      1111  110      11235788999999999987654 689999999887777777544332211


Q ss_pred             c------ccccCCCCccccCCCCceeeeccCCceeEEE
Q 001415          667 T------SENSKNGDVRSLADVKPRITEESNDKSKVWK  698 (1082)
Q Consensus       667 ~------~~~~~~~~~~~s~~~~~l~~~~~d~~i~iw~  698 (1082)
                      .      ..-|..-.+.++.|.+.+++|+..+..-++-
T Consensus       328 l~d~YEnDaifdkFeisfSgd~~~v~sgsy~NNfgiyp  365 (460)
T COG5170         328 LNDVYENDAIFDKFEISFSGDDKHVLSGSYSNNFGIYP  365 (460)
T ss_pred             HHhhhhccceeeeEEEEecCCcccccccccccceeeec
Confidence            1      1112223344577888888888777666654

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=98.67  E-value=6.8e-06  Score=85.89  Aligned_cols=224  Identities=14%  Similarity=0.127  Sum_probs=136.6

Q ss_pred             CCeEEEEecCCCeeEEEECCCC--CCeeEEEEecCCCcEEEEEeCCCcEEEEecccceeeeeecccccCEEEEEEeCCCC
Q 001415          806 GGKISLFNMMTFKTMATFMPPP--PAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALN  883 (1082)
Q Consensus       806 dg~i~iwd~~~~~~~~~~~~~~--~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~  883 (1082)
                      +|.|..||..+++.+.......  ....+..+ + ++..+++++.++.|+.||..+|+.+..... .+.+.... ..++.
T Consensus         2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~-~-~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~-~~~~~~~~-~~~~~   77 (238)
T PF13360_consen    2 DGTLSALDPRTGKELWSYDLGPGIGGPVATAV-P-DGGRVYVASGDGNLYALDAKTGKVLWRFDL-PGPISGAP-VVDGG   77 (238)
T ss_dssp             TSEEEEEETTTTEEEEEEECSSSCSSEEETEE-E-ETTEEEEEETTSEEEEEETTTSEEEEEEEC-SSCGGSGE-EEETT
T ss_pred             CCEEEEEECCCCCEEEEEECCCCCCCccceEE-E-eCCEEEEEcCCCEEEEEECCCCCEEEEeec-ccccccee-eeccc
Confidence            4789999999999988875422  12222233 2 344666678999999999999998866653 22211111 22455


Q ss_pred             EEEEEeCCCcEEEEEcCCcccccceeeeccCCCCCCCCCCcEEEEcCCCcEEEEE-ecCeEEEEEccCcceeeeeccCCC
Q 001415          884 VLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQLAIFETTKLECVKQWVPRES  962 (1082)
Q Consensus       884 ~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~h  962 (1082)
                      .++.++.|+.|..+|..+++..-..........    ..........++..++++ .++.|..+|.++|+.+-.......
T Consensus        78 ~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~  153 (238)
T PF13360_consen   78 RVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPA----GVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEP  153 (238)
T ss_dssp             EEEEEETTSEEEEEETTTSCEEEEEEE-SSCTC----STB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT
T ss_pred             ccccccceeeeEecccCCcceeeeecccccccc----ccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCC
Confidence            667777888999999888775332111111100    111222333336666664 589999999999999877764221


Q ss_pred             C--c------ceeEEEEcCCCceEEEeecCCc-EEEEecCCceeeeeeCCCeecCCCCCCCCceeeEEEEeCCCCCeEEE
Q 001415          963 S--A------PITHATFSCDSQLVYACFLDAT-VCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFAL 1033 (1082)
Q Consensus       963 ~--~------~i~~l~~s~dg~~l~t~s~dg~-v~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~~~~~~~d~~~l~s 1033 (1082)
                      .  .      .+..-....++ .++.++.++. +.+ |+.+++.+-...     ..+     ..  . .... ++..|++
T Consensus       154 ~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~-d~~tg~~~w~~~-----~~~-----~~--~-~~~~-~~~~l~~  217 (238)
T PF13360_consen  154 RGSSPISSFSDINGSPVISDG-RVYVSSGDGRVVAV-DLATGEKLWSKP-----ISG-----IY--S-LPSV-DGGTLYV  217 (238)
T ss_dssp             -SS--EEEETTEEEEEECCTT-EEEEECCTSSEEEE-ETTTTEEEEEEC-----SS------EC--E-CEEC-CCTEEEE
T ss_pred             CCCcceeeecccccceEEECC-EEEEEcCCCeEEEE-ECCCCCEEEEec-----CCC-----cc--C-Ccee-eCCEEEE
Confidence            1  1      11222233345 6666777775 555 999999663222     111     11  1 1233 3667777


Q ss_pred             EecCCcEEEEccCCCCCccc
Q 001415         1034 GLSDGGVHVFEPLESEGKWG 1053 (1082)
Q Consensus      1034 ~~~dg~v~vW~~~~~~~~~~ 1053 (1082)
                      ++.++.|..||+.+|+..|.
T Consensus       218 ~~~~~~l~~~d~~tG~~~W~  237 (238)
T PF13360_consen  218 TSSDGRLYALDLKTGKVVWQ  237 (238)
T ss_dssp             EETTTEEEEEETTTTEEEEE
T ss_pred             EeCCCEEEEEECCCCCEEeE
Confidence            77999999999999998775

...

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=98.66  E-value=3e-06  Score=81.74  Aligned_cols=169  Identities=14%  Similarity=0.041  Sum_probs=118.7

Q ss_pred             EEEEEcCCCcEEEEEccccceeee----------------------------eceeeeccCCCCcccccccccCCCC--c
Q 001415          373 LLLVGTNVGDIGLWEVGSRERLVL----------------------------RNFKVWDLGACSMPLQAALVKDPGV--S  422 (1082)
Q Consensus       373 llasgs~dg~i~iwd~~~~~~~~~----------------------------~~~~~~d~~~~~~~~~~~~~~~h~~--~  422 (1082)
                      +||.|+..|...+|...+.+....                            +..++.+++......+     -|..  .
T Consensus        86 ~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~-----~h~~~~~  160 (344)
T KOG4532|consen   86 TLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFA-----VHNQNLT  160 (344)
T ss_pred             EEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCcccce-----eeccccc
Confidence            477888888888888776543321                            1123333332222222     2322  3


Q ss_pred             eeEEEEecCCCeEEEEeCCCeEEEEEccCCceeeEEEEeeccccCeeEEEecCCCCceEEEEEeCCCcEEEEEccCCcee
Q 001415          423 VNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQ  502 (1082)
Q Consensus       423 V~~l~~spdg~~las~~~d~~v~iwd~~~~~~~~~~~~~~~h~~~V~~l~fs~dg~~~~l~s~s~d~~i~vwd~~~~~~~  502 (1082)
                      +.++++|+|++++++.+....|..|.+...............++.=.+..|+....  .+|++..||++.|||++.-...
T Consensus       161 ~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~--~FAv~~Qdg~~~I~DVR~~~tp  238 (344)
T KOG4532|consen  161 QNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDL--QFAVVFQDGTCAIYDVRNMATP  238 (344)
T ss_pred             eeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcc--eEEEEecCCcEEEEEecccccc
Confidence            88999999999999999999999999986544332223445556667899998888  7999999999999999874433


Q ss_pred             E-----EeecCCcCeEEEeeeecCCceEEEEecCCCcEEEEecCCCCceee
Q 001415          503 Y-----IFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVD  548 (1082)
Q Consensus       503 ~-----~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~  548 (1082)
                      +     +-..|.+.+..+.|++.+.-.+|+..-.-+.+.+-|+++......
T Consensus       239 m~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~  289 (344)
T KOG4532|consen  239 MAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQV  289 (344)
T ss_pred             hhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeE
Confidence            2     223588999999998766556777777778899999988665443

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=98.66  E-value=3.1e-05  Score=81.03  Aligned_cols=217  Identities=15%  Similarity=0.098  Sum_probs=138.0

Q ss_pred             EEEeec-CCCeEEEee-CCeEEEEecCCCeeEEEECCCCCCeeEEEEe-cCCCcEEEEEeCCCcEEEEecccceeeeeec
Q 001415          791 CFALSK-NDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFH-PQDNNIIAIGMDDSSIQIYNVRVDEVKSKLK  867 (1082)
Q Consensus       791 ~l~~s~-dg~~l~~~s-dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s-p~~~~~lasg~~dg~v~iwd~~~~~~~~~l~  867 (1082)
                      +++|.+ ++.++++-. .+.|..|+..++....... ..  ...+++. + ++.++++ .. +.+.++|..+++......
T Consensus         4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~~~~-~~--~~G~~~~~~-~g~l~v~-~~-~~~~~~d~~~g~~~~~~~   77 (246)
T PF08450_consen    4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEVIDL-PG--PNGMAFDRP-DGRLYVA-DS-GGIAVVDPDTGKVTVLAD   77 (246)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEES-SS--EEEEEEECT-TSEEEEE-ET-TCEEEEETTTTEEEEEEE
T ss_pred             ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEEEec-CC--CceEEEEcc-CCEEEEE-Ec-CceEEEecCCCcEEEEee
Confidence            577887 565555554 5889999998876644222 22  7778888 5 6666554 43 456666998885543333


Q ss_pred             c-----cccCEEEEEEeCCCCEEEEEeCC--------CcEEEEEcCCcccccceeeeccCCCCCCCCCCcEEEEcCCCcE
Q 001415          868 G-----HSKRITGLAFSHALNVLVSSGAD--------SQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIH  934 (1082)
Q Consensus       868 ~-----h~~~V~~l~~s~d~~~l~s~s~D--------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~  934 (1082)
                      .     .....+.+++.++|++.++....        |.|..++.. ++.  .......       .....++|+||++.
T Consensus        78 ~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~--~~~~~~~-------~~pNGi~~s~dg~~  147 (246)
T PF08450_consen   78 LPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKV--TVVADGL-------GFPNGIAFSPDGKT  147 (246)
T ss_dssp             EETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEE--EEEEEEE-------SSEEEEEEETTSSE
T ss_pred             ccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeE--EEEecCc-------ccccceEECCcchh
Confidence            2     34568899999999988776544        345555555 221  1122211       23478999999998


Q ss_pred             EEEE--ecCeEEEEEccCcce----eeee-ccCCCCcceeEEEEcCCCceEEEeecCCcEEEEecCCceeeeeeCCCeec
Q 001415          935 FLVV--HETQLAIFETTKLEC----VKQW-VPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYL 1007 (1082)
Q Consensus       935 l~~~--~d~~i~iwd~~~~~~----~~~~-~~~~h~~~i~~l~~s~dg~~l~t~s~dg~v~vwd~~~~~~~~~~~~~~~~ 1007 (1082)
                      |.++  ..+.|..|++.....    ...+ ......+..-.+++..+|.+.++....+.|.+++.. |+++..+.    +
T Consensus       148 lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~----~  222 (246)
T PF08450_consen  148 LYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIE----L  222 (246)
T ss_dssp             EEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-----
T ss_pred             eeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEc----C
Confidence            7763  567888888863322    1122 111212358899999999988888889999999988 98888877    3


Q ss_pred             CCCCCCCCceeeEEEEeCCCCCeEEEE
Q 001415         1008 PAGVSSSNVHPLVIAAHPQEPNEFALG 1034 (1082)
Q Consensus      1008 ~~gh~~~~v~~~~~~~~~~d~~~l~s~ 1034 (1082)
                      |.      -.+++++|...|.+.|.+.
T Consensus       223 p~------~~~t~~~fgg~~~~~L~vT  243 (246)
T PF08450_consen  223 PV------PRPTNCAFGGPDGKTLYVT  243 (246)
T ss_dssp             SS------SSEEEEEEESTTSSEEEEE
T ss_pred             CC------CCEEEEEEECCCCCEEEEE
Confidence            31      2466899964355554443

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=98.61  E-value=0.00015  Score=75.78  Aligned_cols=229  Identities=19%  Similarity=0.199  Sum_probs=141.4

Q ss_pred             eEEEEecCCCeEEEEEcCCCcEEEEEccccceeeeeceeeeccCCCCcccccccccCCCCceeEEEEe-cCCCeEEEEeC
Q 001415          362 MSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWS-PDGSLFGVAYS  440 (1082)
Q Consensus       362 ~~~~~spdg~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s-pdg~~las~~~  440 (1082)
                      .+++|.+....|+++.-..+.|..|+..+++....                    ...  ....+++. ++|+++ .+..
T Consensus         3 Egp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~~--------------------~~~--~~~G~~~~~~~g~l~-v~~~   59 (246)
T PF08450_consen    3 EGPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEVI--------------------DLP--GPNGMAFDRPDGRLY-VADS   59 (246)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEE--------------------ESS--SEEEEEEECTTSEEE-EEET
T ss_pred             cceEEECCCCEEEEEEcCCCEEEEEECCCCeEEEE--------------------ecC--CCceEEEEccCCEEE-EEEc
Confidence            36789984444788888899999999988765431                    111  26777887 665554 4545


Q ss_pred             CCeEEEEEccCCceeeEEEEee--c-cccCeeEEEecCCCCceEEEEEeCC--------CcEEEEEccCCceeEEeecCC
Q 001415          441 RHIVQIYSYHGGDEVRQHLEID--A-HVGGVNDIAFSHPNKQLCVITCGDD--------KTIKVWDATNGAKQYIFEGHE  509 (1082)
Q Consensus       441 d~~v~iwd~~~~~~~~~~~~~~--~-h~~~V~~l~fs~dg~~~~l~s~s~d--------~~i~vwd~~~~~~~~~~~~h~  509 (1082)
                      ++ +.++|..+++.. .+....  . .....+.+++.++|.  +.++....        |.|..++.. ++...... .-
T Consensus        60 ~~-~~~~d~~~g~~~-~~~~~~~~~~~~~~~ND~~vd~~G~--ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~-~~  133 (246)
T PF08450_consen   60 GG-IAVVDPDTGKVT-VLADLPDGGVPFNRPNDVAVDPDGN--LYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVAD-GL  133 (246)
T ss_dssp             TC-EEEEETTTTEEE-EEEEEETTCSCTEEEEEEEE-TTS---EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEE-EE
T ss_pred             Cc-eEEEecCCCcEE-EEeeccCCCcccCCCceEEEcCCCC--EEEEecCCCccccccccceEEECCC-CeEEEEec-Cc
Confidence            44 566699888643 333332  2 345788999999999  56665433        446666655 44333333 34


Q ss_pred             cCeEEEeeeecCCceEEEEecCCCcEEEEecCCCCceeeecCCCCceEEEEEccCCCeeeecccccceeEEEecCCCCEE
Q 001415          510 APVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRF  589 (1082)
Q Consensus       510 ~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~i~~~~~~~~~~~l  589 (1082)
                      ...+.++|+++.. .++++-+..+.|..++++........       ..+.....+.       .+....++++.+|+..
T Consensus       134 ~~pNGi~~s~dg~-~lyv~ds~~~~i~~~~~~~~~~~~~~-------~~~~~~~~~~-------~g~pDG~~vD~~G~l~  198 (246)
T PF08450_consen  134 GFPNGIAFSPDGK-TLYVADSFNGRIWRFDLDADGGELSN-------RRVFIDFPGG-------PGYPDGLAVDSDGNLW  198 (246)
T ss_dssp             SSEEEEEEETTSS-EEEEEETTTTEEEEEEEETTTCCEEE-------EEEEEE-SSS-------SCEEEEEEEBTTS-EE
T ss_pred             ccccceEECCcch-heeecccccceeEEEeccccccceee-------eeeEEEcCCC-------CcCCCcceEcCCCCEE
Confidence            5668889876543 34456677888888888643331100       0000000000       0134457777777777


Q ss_pred             EEEeCCCeEEEEECCCcceEEEEecCCCCCCcCeEEE-cCCCCEEEEEE
Q 001415          590 LAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRF-NKDGCLLAVST  637 (1082)
Q Consensus       590 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~-s~dg~~l~~~~  637 (1082)
                      ++....+.|.+++.+ |+.+..+.....  .+++++| .++.+.|++.+
T Consensus       199 va~~~~~~I~~~~p~-G~~~~~i~~p~~--~~t~~~fgg~~~~~L~vTt  244 (246)
T PF08450_consen  199 VADWGGGRIVVFDPD-GKLLREIELPVP--RPTNCAFGGPDGKTLYVTT  244 (246)
T ss_dssp             EEEETTTEEEEEETT-SCEEEEEE-SSS--SEEEEEEESTTSSEEEEEE
T ss_pred             EEEcCCCEEEEECCC-ccEEEEEcCCCC--CEEEEEEECCCCCEEEEEe
Confidence            877788999999987 888888876633  6889999 46767776654

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]

Probab=98.60  E-value=0.0033  Score=72.75  Aligned_cols=465  Identities=11%  Similarity=0.095  Sum_probs=246.7

Q ss_pred             CeeEEEecCCCCceEEEEEeCCCcEEEEEccCCceeEEe-ecCCcCeEEEeeeecCCce----EEEEecCCCcEEEEecC
Q 001415          467 GVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIF-EGHEAPVYSVCPHHKENIQ----FIFSTALDGKIKAWLYD  541 (1082)
Q Consensus       467 ~V~~l~fs~dg~~~~l~s~s~d~~i~vwd~~~~~~~~~~-~~h~~~v~~~~~~~~~~~~----~l~s~~~dg~i~iwd~~  541 (1082)
                      .++..+.+.+..  .++.++.++.+...++..+.....- ......|.|+.++|.++++    +++.|..+..+.     
T Consensus       489 ~~ti~~~~~n~s--qVvvA~~~~~l~y~~i~~~~l~e~~~~~~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~-----  561 (1096)
T KOG1897|consen  489 KITIGVVSANAS--QVVVAGGGLALFYLEIEDGGLREVSHKEFEYEVACLDISPLGDAPNKSRLLAVGLWSDISM-----  561 (1096)
T ss_pred             ceEEEEEeecce--EEEEecCccEEEEEEeeccceeeeeeheecceeEEEecccCCCCCCcceEEEEEeecceEE-----
Confidence            444444444444  3555566677777777766522111 1234678888888765443    566665444433     


Q ss_pred             CCCceeeecCCCCceEEEEEccCCCeeeecc-----cccceeEEEecCCCCEEEEEeCCCeEEEE--ECCCcceEEEEec
Q 001415          542 NLGSRVDYEAPGRWCTTMAYSADGTRTYQGF-----RKRSLGVVQFDTTKNRFLAAGDDFSIKFW--DMDSVQLLTSIDA  614 (1082)
Q Consensus       542 ~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~-----~~~~i~~~~~~~~~~~l~~~~~dg~i~iw--d~~~~~~~~~~~~  614 (1082)
                                      -+.+.||...+....     -...+-...+-.+..+|+++..||.+.-+  |..++..-..-+.
T Consensus       562 ----------------~l~~~pd~~~~~~~~l~~~~iPRSIl~~~~e~d~~yLlvalgdG~l~~fv~d~~tg~lsd~Kk~  625 (1096)
T KOG1897|consen  562 ----------------ILTFLPDLILITHEQLSGEIIPRSILLTTFEGDIHYLLVALGDGALLYFVLDINTGQLSDRKKV  625 (1096)
T ss_pred             ----------------EEEECCCcceeeeeccCCCccchheeeEEeeccceEEEEEcCCceEEEEEEEcccceEcccccc
Confidence                            233444443221111     01133334455556789999999998766  4455554433333


Q ss_pred             CCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEecCCccceeecccccccccccccccCCCCccccCCCCceeeeccCCce
Q 001415          615 DGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKNGDVRSLADVKPRITEESNDKS  694 (1082)
Q Consensus       615 ~~~~~~i~~~~~s~dg~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i  694 (1082)
                      +-+..++.--.|+..++.-+.+..|.-..+|..+.. -....+.-....-   ...|      .++....-+.....+.+
T Consensus       626 ~lGt~P~~Lr~f~sk~~t~vfa~sdrP~viY~~n~k-Lv~spls~kev~~---~c~f------~s~a~~d~l~~~~~~~l  695 (1096)
T KOG1897|consen  626 TLGTQPISLRTFSSKSRTAVFALSDRPTVIYSSNGK-LVYSPLSLKEVNH---MCPF------NSDAYPDSLASANGGAL  695 (1096)
T ss_pred             ccCCCCcEEEEEeeCCceEEEEeCCCCEEEEecCCc-EEEeccchHHhhh---hccc------ccccCCceEEEecCCce
Confidence            334445655667665554444555555555543322 2222111110000   1111      12333333344444667


Q ss_pred             eEEEecccCCCCccccccccCcccccceeEEEEccCCceeeecccCCeEEEeeccccccCCCCCcccccCccccCCCCcc
Q 001415          695 KVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGI  774 (1082)
Q Consensus       695 ~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~  774 (1082)
                      ++..++...+.....   .|   -......+++.+....+.+.+.......=       . .+.......++++|.++-.
T Consensus       696 ~i~tid~iqkl~irt---vp---l~~~prrI~~q~~sl~~~v~s~r~e~~~~-------~-~~ee~~~s~l~vlD~nTf~  761 (1096)
T KOG1897|consen  696 TIGTIDEIQKLHIRT---VP---LGESPRRICYQESSLTFGVLSNRIESSAE-------Y-YGEEYEVSFLRVLDQNTFE  761 (1096)
T ss_pred             EEEEecchhhcceee---ec---CCCChhheEecccceEEEEEecccccchh-------h-cCCcceEEEEEEecCCcee
Confidence            777666543332221   12   23345566777644433333332111100       0 0111122235666776655


Q ss_pred             eeecc-cCCCCCCCCccEEEeecC-CCeEEEee-----------CCeEEEEecCCCeeEEEECC--CCCCeeEEEEecCC
Q 001415          775 MMTND-VTDSNPEEAVPCFALSKN-DSYVMSAS-----------GGKISLFNMMTFKTMATFMP--PPPAATFLAFHPQD  839 (1082)
Q Consensus       775 ~~~~~-~~~~~~~~~i~~l~~s~d-g~~l~~~s-----------dg~i~iwd~~~~~~~~~~~~--~~~~v~~l~~sp~~  839 (1082)
                      .+... +...+....+.++.|..| ++++++|.           .|.|.+|.....+.++....  -.+.+.++..-  +
T Consensus       762 vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~Gav~aL~~f--n  839 (1096)
T KOG1897|consen  762 VLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKGAVYALVEF--N  839 (1096)
T ss_pred             EEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeeccceeehhhh--C
Confidence            44421 111111223444457777 77888774           26788998877444433322  23445555443  5


Q ss_pred             CcEEEEEeCCCcEEEEecccceeeeeecccccCEEEEEEeCCCCEEEEEeCCCcEEEEEcCCcccccceeeeccCCCCCC
Q 001415          840 NNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPT  919 (1082)
Q Consensus       840 ~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~  919 (1082)
                      ++++|.  -+..|++|++.+.+.++.-..|..++..+...-.|..++.|+--+.+.+-..+..+-.   +........+ 
T Consensus       840 gkllA~--In~~vrLye~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~Sitll~y~~~eg~---f~evArD~~p-  913 (1096)
T KOG1897|consen  840 GKLLAG--INQSVRLYEWTTERELRIECNISNPIIALDLQVKGDEIAVGDLMRSITLLQYKGDEGN---FEEVARDYNP-  913 (1096)
T ss_pred             CeEEEe--cCcEEEEEEccccceehhhhcccCCeEEEEEEecCcEEEEeeccceEEEEEEeccCCc---eEEeehhhCc-
Confidence            667653  4678999999998777777788899999999999999999998888777665553311   2222222221 


Q ss_pred             CCCCcEEEEcCCCcEEEEEecCeEEEEEccCc-------------------ceeeeeccCCCCcceeE--EEEcCCCceE
Q 001415          920 AQSDTRVQFHQDQIHFLVVHETQLAIFETTKL-------------------ECVKQWVPRESSAPITH--ATFSCDSQLV  978 (1082)
Q Consensus       920 ~~~v~~~~fspdg~~l~~~~d~~i~iwd~~~~-------------------~~~~~~~~~~h~~~i~~--l~~s~dg~~l  978 (1082)
                       ...+.+.+-.+..++.+-..+.+.+...++.                   +.+..+   .|..-|..  -..+|-+..+
T Consensus       914 -~Wmtaveil~~d~ylgae~~gNlf~v~~d~~~~td~eR~~l~~~~~~hlGelvn~f---~hg~lv~~~~~s~~~~~~~v  989 (1096)
T KOG1897|consen  914 -NWMTAVEILDDDTYLGAENSGNLFTVRKDSDATTDEERQILEEVGKFHLGELVNKF---RHGSLVMQLGDSMIPLEPKV  989 (1096)
T ss_pred             -cceeeEEEecCceEEeecccccEEEEEecCCCCchhhhhcccceeeEEeccceeee---eecceEeeccccccCCCCcE
Confidence             4578888888888888866676666543321                   111111   23444444  1334555567


Q ss_pred             EEeecCCcEEEE
Q 001415          979 YACFLDATVCVF  990 (1082)
Q Consensus       979 ~t~s~dg~v~vw  990 (1082)
                      ..|..+|.|-+-
T Consensus       990 lfgTv~GsIG~i 1001 (1096)
T KOG1897|consen  990 LFGTVNGSIGII 1001 (1096)
T ss_pred             EEEEccceEEEE
Confidence            888889988653

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=98.57  E-value=8.6e-07  Score=85.09  Aligned_cols=210  Identities=11%  Similarity=0.162  Sum_probs=126.4

Q ss_pred             ceEEEEecCCCeEEEEEcCCCcEEEEEccccceeeeeceeeeccCCCCcccccccccCCCCceeEEEEecCCCeEEEEeC
Q 001415          361 PMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYS  440 (1082)
Q Consensus       361 v~~~~~spdg~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~  440 (1082)
                      |+.+.|+.+-  .|+++..++.+......++.+..     .|+-.....  +...+..|+++-.+-+.+--+..+++++.
T Consensus        39 ~~~~~~v~~~--~lf~~e~~~~~ss~g~~r~~~~~-----~~~rt~~i~--~~~~~a~~sep~p~~~~s~~~t~V~~~~~  109 (319)
T KOG4714|consen   39 LSKVSLSAEY--ILFTGETSSQIISLGKGRGRCIS-----LWERDDGID--PFKVLAKNSEIDPNDACTMTDNRVCIGYA  109 (319)
T ss_pred             EEEeechhhh--eeecccchhheeeeccceEEEec-----hhhcccCcC--ceeeeeccCCCCCcccccccCCceEecCC
Confidence            6667777665  58888888888888776665543     222221111  12234455555555555667888999999


Q ss_pred             CCeEEEEEccCCceeeEEEEee-ccccCeeEEEecCCCCceEEEEEe-----CCCcEEEEEccCCceeEEeecCCcCeEE
Q 001415          441 RHIVQIYSYHGGDEVRQHLEID-AHVGGVNDIAFSHPNKQLCVITCG-----DDKTIKVWDATNGAKQYIFEGHEAPVYS  514 (1082)
Q Consensus       441 d~~v~iwd~~~~~~~~~~~~~~-~h~~~V~~l~fs~dg~~~~l~s~s-----~d~~i~vwd~~~~~~~~~~~~h~~~v~~  514 (1082)
                      ||.+.+.+.+.-..+..  ... .|.+. .+......+.  ++.+++     .-+..+.|+++..+.+..-......|.+
T Consensus       110 dg~~~v~s~~~~~~~~~--~i~~~~~~~-as~~~~~~~~--~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~~~~~v~~  184 (319)
T KOG4714|consen  110 DGSLAVFSTDKDLALMS--RIPSIHSGS-ASRKICRHGN--SILSGGCGNWNAQDNFYANTLDPIKTLIPSKKALDAVTA  184 (319)
T ss_pred             CceEEEEechHHHhhhh--hcccccccc-cccceeeccc--EEecCCcceEeeccceeeecccccccccccccccccchh
Confidence            99999999876222111  111 12221 2223333444  333332     2234556665543322221222334889


Q ss_pred             EeeeecCCceEEEEecCCCcEEEEecCCCCcee-eecCCCCceEEEEEccCCCeeeecccccceeEEEecCCCCEEEEEe
Q 001415          515 VCPHHKENIQFIFSTALDGKIKAWLYDNLGSRV-DYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAG  593 (1082)
Q Consensus       515 ~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~-~~~~~~~~v~~~~~s~d~~~~~~~~~~~~i~~~~~~~~~~~l~~~~  593 (1082)
                      ++-+|... +.+++|+.||.+-+||++...... .+..|..++..+-|.|..                    +..|++++
T Consensus       185 l~~hp~qq-~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~--------------------p~~Lft~s  243 (319)
T KOG4714|consen  185 LCSHPAQQ-HLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKN--------------------PEHLFTCS  243 (319)
T ss_pred             hhCCcccc-cEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCC--------------------chheeEec
Confidence            99888765 688899999999999998753322 344555555555555543                    34799999


Q ss_pred             CCCeEEEEECCC
Q 001415          594 DDFSIKFWDMDS  605 (1082)
Q Consensus       594 ~dg~i~iwd~~~  605 (1082)
                      +||.+..||..+
T Consensus       244 edGslw~wdas~  255 (319)
T KOG4714|consen  244 EDGSLWHWDAST  255 (319)
T ss_pred             CCCcEEEEcCCC
Confidence            999999999765

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=98.57  E-value=7.9e-06  Score=90.99  Aligned_cols=325  Identities=11%  Similarity=0.120  Sum_probs=167.3

Q ss_pred             eeEEEecCCCCceEEEEEe----CCCcEEEEEccCCceeEEeecCCcCeEEEeeeecCCceEEEEecCCCcEEEEecCCC
Q 001415          468 VNDIAFSHPNKQLCVITCG----DDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNL  543 (1082)
Q Consensus       468 V~~l~fs~dg~~~~l~s~s----~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~  543 (1082)
                      -+-..|.|...  +++.++    ..|+|.|+- ++|++.+... ..-.++++||+|..  -.|+.|-.-|.+.+|...+.
T Consensus        18 sti~SWHPseP--lfAVA~fS~er~GSVtIfa-dtGEPqr~Vt-~P~hatSLCWHpe~--~vLa~gwe~g~~~v~~~~~~   91 (1416)
T KOG3617|consen   18 STISSWHPSEP--LFAVASFSPERGGSVTIFA-DTGEPQRDVT-YPVHATSLCWHPEE--FVLAQGWEMGVSDVQKTNTT   91 (1416)
T ss_pred             ccccccCCCCc--eeEEEEecCCCCceEEEEe-cCCCCCcccc-cceehhhhccChHH--HHHhhccccceeEEEecCCc
Confidence            34457888877  555544    457788886 7787655443 22345679999865  57788888899999987765


Q ss_pred             CceeeecCCCCceEEEEEccCCCeeeecccccceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEEec--CC--CCC
Q 001415          544 GSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDA--DG--GLP  619 (1082)
Q Consensus       544 ~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~--~~--~~~  619 (1082)
                      +.-.....|..++..+.||++|.                     .++++..-|.+.+|....-..++....  |.  ..-
T Consensus        92 e~htv~~th~a~i~~l~wS~~G~---------------------~l~t~d~~g~v~lwr~d~~g~~q~~~~~~hel~~~l  150 (1416)
T KOG3617|consen   92 ETHTVVETHPAPIQGLDWSHDGT---------------------VLMTLDNPGSVHLWRYDVIGEIQTSNIMQHELNDQL  150 (1416)
T ss_pred             eeeeeccCCCCCceeEEecCCCC---------------------eEEEcCCCceeEEEEeeeccccccchhhhhHhhcee
Confidence            55545555555666666655554                     788888889999998763222222111  11  111


Q ss_pred             CcCeEEEcCCCCE------EEEEECCCcEE-EEEecCCccceeecccccccccccccccCCCCccccCCCCceeeeccCC
Q 001415          620 ASPRIRFNKDGCL------LAVSTNDNGIK-ILATSDGIRLLRTFENLAYDASRTSENSKNGDVRSLADVKPRITEESND  692 (1082)
Q Consensus       620 ~i~~~~~s~dg~~------l~~~~~dg~i~-iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~  692 (1082)
                      ...+...++++.-      .++.+++..+- .++....      .            +-....-...++|..++.++.+|
T Consensus       151 tl~cfRL~~~~Ee~~~laKaaVtgDe~alD~~fnwk~~------~------------a~rs~~ksgv~~g~~F~~~~~~G  212 (1416)
T KOG3617|consen  151 TLWCFRLSYDREEKFKLAKAAVTGDESALDEPFNWKES------L------------AERSDEKSGVPKGTEFLFAGKSG  212 (1416)
T ss_pred             eEEEEecCCChHHhhhhhhhhccCchhhhcccccCccc------h------------hhccccccCCCCCcEEEEEcCCc
Confidence            2234455565321      22333333221 1111100      0            00011111268888899999999


Q ss_pred             ceeEEEecccCCCCccccccccCcccccceeEEEEccCCceeeecccCCeEEEeecccccc-------CCCCCcccc-cC
Q 001415          693 KSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTER-------NSSGKATAS-VA  764 (1082)
Q Consensus       693 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~-------~~~~~~~~~-~~  764 (1082)
                      +|+--|-...     ++.+.     ..+....+.|.+-...+++...+-.+.++-......       ...|+.-.. ..
T Consensus       213 tVyyvdq~g~-----~~~V~-----k~dS~vQmLf~~~~eai~~i~e~lr~~l~~v~~~G~~ee~~~vk~sgk~GgrqGg  282 (1416)
T KOG3617|consen  213 TVYYVDQNGR-----QRTVH-----KLDSEVQMLFMGYCEAISIIIEFLRDCLIFVLAKGTSEERCAVKVSGKLGGRQGG  282 (1416)
T ss_pred             eEEEEcCCCc-----EEEEE-----EccchHHHHHhcccceEEEEeeeceeeEEEecCCCchHHhhhhhhccccCCccCc
Confidence            8887664321     11110     000011122333333333333333333332221100       000000000 00


Q ss_pred             ccccCCCCcceeecccCCCCCCCCccEEEeecCCCeEEEeeC-CeEEEEecCCC-------eeEEEECC---CCCCeeEE
Q 001415          765 PQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASG-GKISLFNMMTF-------KTMATFMP---PPPAATFL  833 (1082)
Q Consensus       765 ~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~l~~~sd-g~i~iwd~~~~-------~~~~~~~~---~~~~v~~l  833 (1082)
                      +.. .-.+|.+....--+......+.|++++.-+..+..|.+ |.+.+|--...       ....++.+   ..+.|+.+
T Consensus       283 iA~-sEssGvLr~~eKyg~e~ge~~~c~cY~~~~~~l~agt~~gnv~~w~~v~~~f~g~p~~d~w~l~~~~e~~g~I~~i  361 (1416)
T KOG3617|consen  283 IAC-SESSGVLRKSEKYGLELGEGILCMCYGEKEIRLWAGTKEGNVTIWLDVNKGFQGDPTIDVWTLNGKRESLGKISLI  361 (1416)
T ss_pred             ccc-ccccccccCCcchhhhcCCceEEEEEeccceEEEecccCCcEEEeeecCccccCCCCcceEEecCchhhccceEEE
Confidence            000 11112222222222335678999999999999998875 99999964321       22334433   34579999


Q ss_pred             EEecCCCcEEEEEeCC
Q 001415          834 AFHPQDNNIIAIGMDD  849 (1082)
Q Consensus       834 ~~sp~~~~~lasg~~d  849 (1082)
                      .|.| -...+++-+..
T Consensus       362 ~Wg~-~k~~~avn~~~  376 (1416)
T KOG3617|consen  362 RWGP-IKSTAAVNTEE  376 (1416)
T ss_pred             Eecc-ccchhhhhhhh
Confidence            9999 55555554433

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=98.57  E-value=8.1e-05  Score=84.01  Aligned_cols=312  Identities=10%  Similarity=0.007  Sum_probs=168.5

Q ss_pred             EEEEEeCCCcEEEEEccCCceeEEeecCCc--CeE-----EEeeeecCCceEEEEecCCCcEEEEecCCCCceeeecCCC
Q 001415          481 CVITCGDDKTIKVWDATNGAKQYIFEGHEA--PVY-----SVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPG  553 (1082)
Q Consensus       481 ~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~--~v~-----~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~  553 (1082)
                      .++.++.++.+.-+|.++|+.+........  ...     .+.-.+.-.+..++.++.++.+..+|.++++.........
T Consensus        71 ~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~  150 (394)
T PRK11138         71 KVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVAGGKVYIGSEKGQVYALNAEDGEVAWQTKVAG  150 (394)
T ss_pred             EEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEEECCEEEEEcCCCEEEEEECCCCCCcccccCCC
Confidence            466777788899999999988876542210  000     0000011122467788889999999999888877665433


Q ss_pred             CceEEEEEccCCCeeeecccccceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEEecCCCCC---CcCeEEEcCCC
Q 001415          554 RWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLP---ASPRIRFNKDG  630 (1082)
Q Consensus       554 ~~v~~~~~s~d~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~---~i~~~~~s~dg  630 (1082)
                      ....+...                       .+..++.+..++.+..+|..+|+.+..........   ...+...  .+
T Consensus       151 ~~~ssP~v-----------------------~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v--~~  205 (394)
T PRK11138        151 EALSRPVV-----------------------SDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPAT--AF  205 (394)
T ss_pred             ceecCCEE-----------------------ECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEE--EC
Confidence            21100000                       02256777888999999999999988776432100   0011111  23


Q ss_pred             CEEEEEECCCcEEEEEecCCccceeecccccccccccccccCCCCccccCCCCceeeeccCCceeEEEecccCCCCcccc
Q 001415          631 CLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRS  710 (1082)
Q Consensus       631 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~  710 (1082)
                      ..++.++.+|.+..+|..++......-......... .-.+........-.+..++.++.++.+..+|..+++..-... 
T Consensus       206 ~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~-~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~~-  283 (394)
T PRK11138        206 GGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATE-IDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKRE-  283 (394)
T ss_pred             CEEEEEcCCCEEEEEEccCChhhheeccccCCCccc-hhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEeec-
Confidence            457778888999999998884432211000000000 000000000001134556667778888888877643221110 


Q ss_pred             ccccCcccccceeEEEEccCCceeeecccCCeEEEeeccccccCCCCCcccccCccccCCCCcceeecccCCCCCCCCcc
Q 001415          711 LRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVP  790 (1082)
Q Consensus       711 ~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  790 (1082)
                        +      .....+.  ..+..++.++.++.+..+|.....             .+|.....           ......
T Consensus       284 --~------~~~~~~~--~~~~~vy~~~~~g~l~ald~~tG~-------------~~W~~~~~-----------~~~~~~  329 (394)
T PRK11138        284 --Y------GSVNDFA--VDGGRIYLVDQNDRVYALDTRGGV-------------ELWSQSDL-----------LHRLLT  329 (394)
T ss_pred             --C------CCccCcE--EECCEEEEEcCCCeEEEEECCCCc-------------EEEccccc-----------CCCccc
Confidence              0      0111111  235567777788888877654321             23332110           001111


Q ss_pred             EEEeecCCCeEEEeeCCeEEEEecCCCeeEEEECCCCCCeeE-EEEecCCCcEEEEEeCCCcEEEEec
Q 001415          791 CFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATF-LAFHPQDNNIIAIGMDDSSIQIYNV  857 (1082)
Q Consensus       791 ~l~~s~dg~~l~~~sdg~i~iwd~~~~~~~~~~~~~~~~v~~-l~~sp~~~~~lasg~~dg~v~iwd~  857 (1082)
                      +..+ .++.+++...+|.+...|..+++.+.........+.+ ..+.  ++ .|++++.||.|+.++.
T Consensus       330 sp~v-~~g~l~v~~~~G~l~~ld~~tG~~~~~~~~~~~~~~s~P~~~--~~-~l~v~t~~G~l~~~~~  393 (394)
T PRK11138        330 APVL-YNGYLVVGDSEGYLHWINREDGRFVAQQKVDSSGFLSEPVVA--DD-KLLIQARDGTVYAITR  393 (394)
T ss_pred             CCEE-ECCEEEEEeCCCEEEEEECCCCCEEEEEEcCCCcceeCCEEE--CC-EEEEEeCCceEEEEeC
Confidence            1122 2455544445799999999999988877643333332 2332  34 5677889999988764

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=98.55  E-value=3.9e-07  Score=90.93  Aligned_cols=166  Identities=13%  Similarity=0.061  Sum_probs=125.0

Q ss_pred             EEEecCCCeEEEEEcCCCcEEEEEccccceeeeeceeeeccCCCCcccccccccCCCCceeEEEEecCCCeEEEEeCCCe
Q 001415          364 MDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHI  443 (1082)
Q Consensus       364 ~~~spdg~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d~~  443 (1082)
                      ++||-+-.-+-++.+.+-.|-+-|++||-...                    +. ..+.|.++.|...+..+..|+.+|.
T Consensus       217 CawSlni~gyhfs~G~sqqv~L~nvetg~~qs--------------------f~-sksDVfAlQf~~s~nLv~~GcRnge  275 (425)
T KOG2695|consen  217 CAWSLNIMGYHFSVGLSQQVLLTNVETGHQQS--------------------FQ-SKSDVFALQFAGSDNLVFNGCRNGE  275 (425)
T ss_pred             hhhhhccceeeecccccceeEEEEeecccccc--------------------cc-cchhHHHHHhcccCCeeEecccCCc
Confidence            36664332233555567788899998875432                    22 5678999999999999999999999


Q ss_pred             EEEEEccCCce--eeEEEEeeccccCeeEEEecC-CCCceEEEEEeCCCcEEEEEccCCce---eEEeecCCcCeEEEee
Q 001415          444 VQIYSYHGGDE--VRQHLEIDAHVGGVNDIAFSH-PNKQLCVITCGDDKTIKVWDATNGAK---QYIFEGHEAPVYSVCP  517 (1082)
Q Consensus       444 v~iwd~~~~~~--~~~~~~~~~h~~~V~~l~fs~-dg~~~~l~s~s~d~~i~vwd~~~~~~---~~~~~~h~~~v~~~~~  517 (1082)
                      |..+|+..+..  ..+. ..-.|...|+++..-. +++  +|++.+.+|+|++||.+--++   +++..||...-.-+-+
T Consensus       276 I~~iDLR~rnqG~~~~a-~rlyh~Ssvtslq~Lq~s~q--~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~  352 (425)
T KOG2695|consen  276 IFVIDLRCRNQGNGWCA-QRLYHDSSVTSLQILQFSQQ--KLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPA  352 (425)
T ss_pred             EEEEEeeecccCCCcce-EEEEcCcchhhhhhhccccc--eEeeccCcCceeEeeehhhhcccceeeeeccccccccccc
Confidence            99999986511  1111 1235889999998877 555  789999999999999987666   8899999877666666


Q ss_pred             eecCCceEEEEecCCCcEEEEecCCCCceeeecCCC
Q 001415          518 HHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPG  553 (1082)
Q Consensus       518 ~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~  553 (1082)
                      +-++....+++++.|...|+|.++.+..+.++....
T Consensus       353 ~v~~eeg~I~s~GdDcytRiWsl~~ghLl~tipf~~  388 (425)
T KOG2695|consen  353 HVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIPFPY  388 (425)
T ss_pred             ccccccceEEEccCeeEEEEEecccCceeeccCCCC
Confidence            666666789999999999999999877766555443

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.54  E-value=0.00016  Score=69.98  Aligned_cols=299  Identities=12%  Similarity=0.090  Sum_probs=162.4

Q ss_pred             EEecCCCeEEEEEcCCCcEEEEEccccceeeeeceeeeccCCCCcccccccccCCCCceeEEEEecCCCeEEEEeCCCeE
Q 001415          365 DFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIV  444 (1082)
Q Consensus       365 ~~spdg~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d~~v  444 (1082)
                      ..-+|.+.+++.|+..+.+.--|..+|+..-+.                    --...|.+-+.- -|++++.|+..|.+
T Consensus        17 VV~~dskT~v~igSHs~~~~avd~~sG~~~We~--------------------ilg~RiE~sa~v-vgdfVV~GCy~g~l   75 (354)
T KOG4649|consen   17 VVCNDSKTLVVIGSHSGIVIAVDPQSGNLIWEA--------------------ILGVRIECSAIV-VGDFVVLGCYSGGL   75 (354)
T ss_pred             EEecCCceEEEEecCCceEEEecCCCCcEEeeh--------------------hhCceeeeeeEE-ECCEEEEEEccCcE
Confidence            445667778999999999999999999876531                    112233333322 57789999999999


Q ss_pred             EEEEccCCceeeEEEEeeccccCee-EEEecCCCCceEEEEEeCCCcEEEEEccCCceeEEeecCCcCeEEEeeeecCCc
Q 001415          445 QIYSYHGGDEVRQHLEIDAHVGGVN-DIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENI  523 (1082)
Q Consensus       445 ~iwd~~~~~~~~~~~~~~~h~~~V~-~l~fs~dg~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~  523 (1082)
                      .+.+.++|........+.    .|. .....+++.  ++..|+.|++.+.-|..+..++...+...+...+-++.+. ++
T Consensus        76 Yfl~~~tGs~~w~f~~~~----~vk~~a~~d~~~g--lIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~g-~~  148 (354)
T KOG4649|consen   76 YFLCVKTGSQIWNFVILE----TVKVRAQCDFDGG--LIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPG-DG  148 (354)
T ss_pred             EEEEecchhheeeeeehh----hhccceEEcCCCc--eEEEecCCCcEEEecccccceEEecccCCceeccceecCC-Cc
Confidence            999999997665433322    222 233456777  8999999999999999999999887644333333333332 22


Q ss_pred             eEEEEecCCCcE-----------EEEecCCCCceeeecC---CCCce-----EEEEEccCCCeeeecccccceeE-EEec
Q 001415          524 QFIFSTALDGKI-----------KAWLYDNLGSRVDYEA---PGRWC-----TTMAYSADGTRTYQGFRKRSLGV-VQFD  583 (1082)
Q Consensus       524 ~~l~s~~~dg~i-----------~iwd~~~~~~~~~~~~---~~~~v-----~~~~~s~d~~~~~~~~~~~~i~~-~~~~  583 (1082)
                       .|+.+...|.+           .+|-.....+.+....   ..-.+     .-++|++.|+.+..-.+.+.+.. -+.+
T Consensus       149 -sly~a~t~G~vlavt~~~~~~~~~w~~~~~~PiF~splcv~~sv~i~~VdG~l~~f~~sG~qvwr~~t~GpIf~~Pc~s  227 (354)
T KOG4649|consen  149 -SLYAAITAGAVLAVTKNPYSSTEFWAATRFGPIFASPLCVGSSVIITTVDGVLTSFDESGRQVWRPATKGPIFMEPCES  227 (354)
T ss_pred             -eEEEEeccceEEEEccCCCCcceehhhhcCCccccCceeccceEEEEEeccEEEEEcCCCcEEEeecCCCceecccccC
Confidence             23333333332           2343333222221100   00011     12467777876666555555432 1112


Q ss_pred             -CCCCEEEEEeCCCe--------EEEEECCCcceEEEEecCCCCCCcCeEEEc-C---CCCEEEEEECCCcEEEEEecCC
Q 001415          584 -TTKNRFLAAGDDFS--------IKFWDMDSVQLLTSIDADGGLPASPRIRFN-K---DGCLLAVSTNDNGIKILATSDG  650 (1082)
Q Consensus       584 -~~~~~l~~~~~dg~--------i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s-~---dg~~l~~~~~dg~i~iwd~~~~  650 (1082)
                       |..+.+..+.++..        -.+|..++|.....+-...     ...+++ |   ..++|..++.||.+.|.-....
T Consensus       228 ~Ps~q~i~~~~~~Cf~~~~p~~ghL~w~~~~g~t~~vy~~p~-----l~F~~h~~~~S~~~ll~~~s~dgkv~il~~~~s  302 (354)
T KOG4649|consen  228 RPSCQQISLENENCFCAPLPIAGHLLWATQSGTTLHVYLSPK-----LRFDLHSPGISYPKLLRRSSGDGKVMILMTSKS  302 (354)
T ss_pred             CCcceEEEEecCCeEEEeccccceEEEEecCCcEEEEEeCcc-----cceeccCCCCcchhhhhhhcCCCcEEEEEeccc
Confidence             33344444443332        2356655554333332111     012221 1   1456777888999888743322


Q ss_pred             ccceeeccccccccccc-ccccCCCCccccCC--CCceeeeccCCceeEEEecc
Q 001415          651 IRLLRTFENLAYDASRT-SENSKNGDVRSLAD--VKPRITEESNDKSKVWKLTE  701 (1082)
Q Consensus       651 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~s~~--~~~l~~~~~d~~i~iw~~~~  701 (1082)
                         +.....+....... .+.. ..++..+|-  +..++.|++|.-++.||+.+
T Consensus       303 ---l~~~~s~~g~lq~~~~~el-~~eIFsSPvii~grl~igcRDdYv~cldl~~  352 (354)
T KOG4649|consen  303 ---LAEISSNGGELQNLEAIEL-SNEIFSSPVIIDGRLLIGCRDDYVRCLDLDT  352 (354)
T ss_pred             ---ccccccCCCccceEEEeec-CcccccCCeEEccEEEEEEccCeEEEEeccc
Confidence               11111111111100 1111 112222331  35588999999999999874

>PF10607 CLTH: CTLH/CRA C-terminal to LisH motif domain; InterPro: IPR019589 This entry represents the CRA (or CT11-RanBPM) domain, which is a protein-protein interaction domain present in crown eukaryotes (plants, animals, fungi) and which is found in Ran-binding proteins such as Ran-binding protein 9 (RanBP9 or RanBPM) and RanBP10

Probab=98.54  E-value=3.3e-07  Score=86.52  Aligned_cols=134  Identities=22%  Similarity=0.231  Sum_probs=98.8

Q ss_pred             HHHHHHHhhccCHHHHHHHhccCccccCcccchhhHHHHHHHHHHHHHhcCCHHHHHHHHHhccccccccCHHHHHHHHH
Q 001415           38 MKYFEDEVHNGNWDDVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDKHDRAKAVEILVKDLKVFSTFNEELFKEITQ  117 (1082)
Q Consensus        38 ~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~lell~~~~~~~a~~~l~~~l~~~~~~~~~~~~~l~~  117 (1082)
                      ...++++|++|+++.|++.++.....-... ...+.|.|++|+|+|+|..++..+|+.+.|+.+.|......+.++.+..
T Consensus         5 r~~I~~~I~~g~i~~Ai~w~~~~~~~l~~~-~~~L~f~L~~q~fiell~~~~~~~Ai~y~r~~l~~~~~~~~~~l~~~~~   83 (145)
T PF10607_consen    5 RKKIRQAILNGDIDPAIEWLNENFPELLKR-NSSLEFELRCQQFIELLREGDIMEAIEYARKHLSPFNDEFLEELKKLMS   83 (145)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHcCHHHHhc-CCchhHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence            578999999999999999999872211111 1249999999999999999999999999999997665445567777888


Q ss_pred             Hhccccccc--hhhhccCCCchHHHHHHHHHHHhhcccCCCccccccCCCCc-chHHHHHHHHHHHHH
Q 001415          118 LLTLENFRE--NEQLSKYGDTKSARSIMLVELKKLIEANPLFRDKLQFPNLK-NSRLRTLINQSLNWQ  182 (1082)
Q Consensus       118 ll~~~~~~~--~~~~~~~~~~~~~r~~l~~~l~~~~~~~~~~~~~~~~~~~p-~~rL~~ll~~~~~~q  182 (1082)
                      +|.......  ...+...-+. .+|+++++.+.+.+-...-         +| .+.|..++++....+
T Consensus        84 lL~~~~~~~~~~s~~~~l~~~-~~~~~la~~~~~~~l~~~~---------~~~~s~L~~~~~~g~~~l  141 (145)
T PF10607_consen   84 LLAYPDPEEPLPSPYKELLSP-ERREELAEEFNSAILKSYG---------LPKESPLEVILKAGLSAL  141 (145)
T ss_pred             HHHcCCcccccchHHHHHhCh-HHHHHHHHHHHHHHHHHhC---------cCCCCHHHHHHHHHHHHh
Confidence            887766554  3344333333 7789999999887655332         33 567888888876544

RanBPM is a scaffolding protein important in regulating cellular function in both the immune system and the nervous system, and may act as an adapter protein to couple membrane receptors to intracellular signaling pathways. This domain is at the C terminus of the proteins and is the binding domain for the CRA motif, which is comprised of approximately 100 amino acids at the C-terminal of RanBPM. It was found to be important for the interaction of RanBPM with fragile X mental retardation protein (FMRP), but its functional significance has yet to be determined [].

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=98.53  E-value=7.7e-07  Score=97.34  Aligned_cols=219  Identities=13%  Similarity=0.228  Sum_probs=145.8

Q ss_pred             eecCCCCCceEEEEecCCCeEEEEEcCCCcEEEEEccccceeeeeceeeeccCCCCcccccccccCCCCceeEEEEec-C
Q 001415          353 RTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP-D  431 (1082)
Q Consensus       353 ~~~~h~~~v~~~~~spdg~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~sp-d  431 (1082)
                      .+-+|+..|+.+-|.|...-++|+.+.|..|..||+.......    -.              ...-...-+.++|+. |
T Consensus       109 ~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~----ys--------------~~~w~s~asqVkwnyk~  170 (1081)
T KOG0309|consen  109 VLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPF----YS--------------TSSWRSAASQVKWNYKD  170 (1081)
T ss_pred             EEecCccceeccccCCCCCcceeeccccccceeeeccCCCcce----ee--------------eecccccCceeeecccC
Confidence            4556999999999999998899999999999999997754332    11              112223556788988 5


Q ss_pred             CCeEEEEeCCCeEEEEEccCCceeeEEEEeeccccCeeEEEecCCCCceEEEEEeCCCcEEEEEccCCce--eEEeecCC
Q 001415          432 GSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAK--QYIFEGHE  509 (1082)
Q Consensus       432 g~~las~~~d~~v~iwd~~~~~~~~~~~~~~~h~~~V~~l~fs~dg~~~~l~s~s~d~~i~vwd~~~~~~--~~~~~~h~  509 (1082)
                      +..|| .+....|++||...|....  ..+++|...|..++|..--.. .+.+++.|++|+.||......  .++.. ..
T Consensus       171 p~vla-sshg~~i~vwd~r~gs~pl--~s~K~~vs~vn~~~fnr~~~s-~~~s~~~d~tvkfw~y~kSt~e~~~~vt-t~  245 (1081)
T KOG0309|consen  171 PNVLA-SSHGNDIFVWDLRKGSTPL--CSLKGHVSSVNSIDFNRFKYS-EIMSSSNDGTVKFWDYSKSTTESKRTVT-TN  245 (1081)
T ss_pred             cchhh-hccCCceEEEeccCCCcce--EEecccceeeehHHHhhhhhh-hhcccCCCCceeeecccccccccceecc-cc
Confidence            55555 4466789999998776433  368889999999999764333 588999999999999875432  22222 44


Q ss_pred             cCeEEEeeeecCCceEEEEecCCCcEEEEecCC----------CCceeeecCCCCceEEEEEccCCCeeeecccccceeE
Q 001415          510 APVYSVCPHHKENIQFIFSTALDGKIKAWLYDN----------LGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGV  579 (1082)
Q Consensus       510 ~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~----------~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~i~~  579 (1082)
                      .+|+--++.|-++|.++.-.-.+..+.+.+.++          ..++..+.+|.+.|....|...+..           .
T Consensus       246 ~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~-----------~  314 (1081)
T KOG0309|consen  246 FPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKEC-----------D  314 (1081)
T ss_pred             CcceeccccccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhcccc-----------c
Confidence            566666666767665555444444555544433          2344566666666655554433220           0


Q ss_pred             EEecCCCCEEEEEeCCCeEEEEECCC
Q 001415          580 VQFDTTKNRFLAAGDDFSIKFWDMDS  605 (1082)
Q Consensus       580 ~~~~~~~~~l~~~~~dg~i~iwd~~~  605 (1082)
                      -.++...-+|++-+.|.++++|-+..
T Consensus       315 ~d~d~rdfQLVTWSkD~~lrlWpI~~  340 (1081)
T KOG0309|consen  315 GDYDSRDFQLVTWSKDQTLRLWPIDS  340 (1081)
T ss_pred             CCCCccceeEEEeecCCceEeeeccH
Confidence            11122223789999999999998754

>PRK02888 nitrous-oxide reductase; Validated

Probab=98.53  E-value=7.8e-06  Score=91.44  Aligned_cols=136  Identities=10%  Similarity=0.097  Sum_probs=85.9

Q ss_pred             CCcEEEEEeCCCcEEEEeccc-----ceeeeeecccccCEEEEEEeCCCCEEEEEe-CCCcEEEEEcCCccccc------
Q 001415          839 DNNIIAIGMDDSSIQIYNVRV-----DEVKSKLKGHSKRITGLAFSHALNVLVSSG-ADSQLCVWSSDGWEKQK------  906 (1082)
Q Consensus       839 ~~~~lasg~~dg~v~iwd~~~-----~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s-~Dg~i~vwd~~~~~~~~------  906 (1082)
                      +|++...  .++.|.+.|..+     .+.+..+. -......+++||||+++++++ .+.+|.|.|+...+..-      
T Consensus       287 dGK~~~V--~gn~V~VID~~t~~~~~~~v~~yIP-VGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~  363 (635)
T PRK02888        287 AGKFKTI--GGSKVPVVDGRKAANAGSALTRYVP-VPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKP  363 (635)
T ss_pred             CCCEEEE--CCCEEEEEECCccccCCcceEEEEE-CCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCc
Confidence            4444444  256788999887     34444444 334568899999999987766 48899999998844200      


Q ss_pred             -ce-eeeccCCCCCCCCCCcEEEEcCCCcEEEE-EecCeEEEEEccC----------cceeeeeccC---CCCcceeEEE
Q 001415          907 -NR-FLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFETTK----------LECVKQWVPR---ESSAPITHAT  970 (1082)
Q Consensus       907 -~~-~~~~~~~~~~~~~~v~~~~fspdg~~l~~-~~d~~i~iwd~~~----------~~~~~~~~~~---~h~~~i~~l~  970 (1082)
                       .. .-+..-|     ......+|.++|....+ --|.+|..|++.+          ...+..+..+   +|......=.
T Consensus       364 ~~~vvaevevG-----lGPLHTaFDg~G~aytslf~dsqv~kwn~~~a~~~~~g~~~~~v~~k~dV~y~pgh~~~~~g~t  438 (635)
T PRK02888        364 RDAVVAEPELG-----LGPLHTAFDGRGNAYTTLFLDSQIVKWNIEAAIRAYKGEKVDPIVQKLDVHYQPGHNHASMGET  438 (635)
T ss_pred             cceEEEeeccC-----CCcceEEECCCCCEEEeEeecceeEEEehHHHHHHhccccCCcceecccCCCccceeeecCCCc
Confidence             00 1111112     34578999999986666 4789999999876          2233333321   3333222334


Q ss_pred             EcCCCceEEEee
Q 001415          971 FSCDSQLVYACF  982 (1082)
Q Consensus       971 ~s~dg~~l~t~s  982 (1082)
                      -.|||+||++.+
T Consensus       439 ~~~dgk~l~~~n  450 (635)
T PRK02888        439 KEADGKWLVSLN  450 (635)
T ss_pred             CCCCCCEEEEcc
Confidence            478999998875

>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]

Probab=98.52  E-value=0.0053  Score=71.21  Aligned_cols=591  Identities=11%  Similarity=0.089  Sum_probs=288.8

Q ss_pred             eecCCCCCceEEEEecCCCeEEEEEcCCCcEEEEEccccceeeeeceeeeccCCCCcccccccccCCCCceeEEEEecC-
Q 001415          353 RTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPD-  431 (1082)
Q Consensus       353 ~~~~h~~~v~~~~~spdg~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spd-  431 (1082)
                      ..++..+-..|+.+-++|  +|++||.-|.=.+-.+.+.......          ....+.   -..-++|..++.-.+ 
T Consensus       301 e~lge~siassi~~L~ng--~lFvGS~~gdSqLi~L~~e~d~gsy----------~~ilet---~~NLgPI~Dm~Vvd~d  365 (1096)
T KOG1897|consen  301 EYLGETSIASSINYLDNG--VLFVGSRFGDSQLIKLNTEPDVGSY----------VVILET---FVNLGPIVDMCVVDLD  365 (1096)
T ss_pred             EecCCcchhhhhhcccCc--eEEEeccCCceeeEEccccCCCCch----------hhhhhh---cccccceeeEEEEecc
Confidence            455667777888888898  6889998776655555443222100          000000   112347888777552 


Q ss_pred             ---CCeEEEEe---CCCeEEEEEccCCceeeEEEEeeccccCeeEEE--ecCCCCceEEEEEeCCCcEEEEEccCCceeE
Q 001415          432 ---GSLFGVAY---SRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIA--FSHPNKQLCVITCGDDKTIKVWDATNGAKQY  503 (1082)
Q Consensus       432 ---g~~las~~---~d~~v~iwd~~~~~~~~~~~~~~~h~~~V~~l~--fs~dg~~~~l~s~s~d~~i~vwd~~~~~~~~  503 (1082)
                         +..+++|+   .||+++|..-.-+-.......+.| -..++.+.  +.+.-.. +++.+-. +.-++..+...-...
T Consensus       366 ~q~q~qivtCsGa~kdgSLRiiRngi~I~e~A~i~l~G-ikg~w~lk~~v~~~~d~-ylvlsf~-~eTrvl~i~~e~ee~  442 (1096)
T KOG1897|consen  366 RQGQGQIVTCSGAFKDGSLRIIRNGIGIDELASIDLPG-IKGMWSLKSMVDENYDN-YLVLSFI-SETRVLNISEEVEET  442 (1096)
T ss_pred             ccCCceEEEEeCCCCCCcEEEEecccccceeeEeecCC-ccceeEeeccccccCCc-EEEEEec-cceEEEEEccceEEe
Confidence               24555554   588999986544332222334555 45677777  5443333 3333322 223344432221111


Q ss_pred             EeecCCcCeEEEeeeecCCceEEEEecCCCcEEEEecCCCCceeeecCCCCceEEEEEccCCCeeeecccccceeEEEec
Q 001415          504 IFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFD  583 (1082)
Q Consensus       504 ~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~i~~~~~~  583 (1082)
                      ...+.......+..+.-. ++.|+=.. ...||+++-.  .....+..+.+.                      +.....
T Consensus       443 ~~~gf~~~~~Tif~S~i~-g~~lvQvT-s~~iRl~ss~--~~~~~W~~p~~~----------------------ti~~~~  496 (1096)
T KOG1897|consen  443 EDPGFSTDEQTIFCSTIN-GNQLVQVT-SNSIRLVSSA--GLRSEWRPPGKI----------------------TIGVVS  496 (1096)
T ss_pred             ccccccccCceEEEEccC-CceEEEEe-cccEEEEcch--hhhhcccCCCce----------------------EEEEEe
Confidence            111111222222211111 11111111 1234444332  111111111111                      111112


Q ss_pred             CCCCEEEEEeCCCeEEEEECCCcceEEEEecCCCCCCcCeEEEcCC--C----CEEEEEECCCcEEEEEecCCccceee-
Q 001415          584 TTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKD--G----CLLAVSTNDNGIKILATSDGIRLLRT-  656 (1082)
Q Consensus       584 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~d--g----~~l~~~~~dg~i~iwd~~~~~~~~~~-  656 (1082)
                      .+...++.++.++.+...++..+. +.....+.-...|.|+.++|-  +    +++++|..+..+.+.-.......... 
T Consensus       497 ~n~sqVvvA~~~~~l~y~~i~~~~-l~e~~~~~~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~~~~~  575 (1096)
T KOG1897|consen  497 ANASQVVVAGGGLALFYLEIEDGG-LREVSHKEFEYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDLILITHE  575 (1096)
T ss_pred             ecceEEEEecCccEEEEEEeeccc-eeeeeeheecceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCcceeeee
Confidence            222256777777777777776665 333322333346889999973  2    37888887766655433222122111 


Q ss_pred             -cccccccccccccccCCCCccccCCCCceeeeccCCceeEEEecccCCCCc-cccccccCcccccceeEEEEccCCcee
Q 001415          657 -FENLAYDASRTSENSKNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQ-CRSLRLPENLRATKISRLIFTNSGNAI  734 (1082)
Q Consensus       657 -~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~s~~~~~l  734 (1082)
                       +.+...+.   ++-+    ...-.|..+|.++..||.+.-|.+........ .+..    .....++.--.|+..++.-
T Consensus       576 ~l~~~~iPR---SIl~----~~~e~d~~yLlvalgdG~l~~fv~d~~tg~lsd~Kk~----~lGt~P~~Lr~f~sk~~t~  644 (1096)
T KOG1897|consen  576 QLSGEIIPR---SILL----TTFEGDIHYLLVALGDGALLYFVLDINTGQLSDRKKV----TLGTQPISLRTFSSKSRTA  644 (1096)
T ss_pred             ccCCCccch---heee----EEeeccceEEEEEcCCceEEEEEEEcccceEcccccc----ccCCCCcEEEEEeeCCceE
Confidence             11111111   1111    11244578899999999887666553221111 1100    1134455556676666555


Q ss_pred             eecccCCeEEEeeccccccCCCCCcccccCccccCCCCcceeecccCCCCCCCCccEEEeecCCCeEEEeeCCeEEEEec
Q 001415          735 LALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNM  814 (1082)
Q Consensus       735 ~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~l~~~sdg~i~iwd~  814 (1082)
                      +.+.+|.-..+|.-.                       +++.-..+.. ..-..+..+.-..-...++.+..+.+++.-+
T Consensus       645 vfa~sdrP~viY~~n-----------------------~kLv~spls~-kev~~~c~f~s~a~~d~l~~~~~~~l~i~ti  700 (1096)
T KOG1897|consen  645 VFALSDRPTVIYSSN-----------------------GKLVYSPLSL-KEVNHMCPFNSDAYPDSLASANGGALTIGTI  700 (1096)
T ss_pred             EEEeCCCCEEEEecC-----------------------CcEEEeccch-HHhhhhcccccccCCceEEEecCCceEEEEe
Confidence            555555444444221                       1111110100 0001111111112234677777777777766


Q ss_pred             CCCee--EEEECCCCCCeeEEEEecCCCcEEEEEeCC--------------CcEEEEecccceeeeeeccc----ccCEE
Q 001415          815 MTFKT--MATFMPPPPAATFLAFHPQDNNIIAIGMDD--------------SSIQIYNVRVDEVKSKLKGH----SKRIT  874 (1082)
Q Consensus       815 ~~~~~--~~~~~~~~~~v~~l~~sp~~~~~lasg~~d--------------g~v~iwd~~~~~~~~~l~~h----~~~V~  874 (1082)
                      +.-+.  +++.. -......+++.+ ...++++.+.-              ..++++|-++.+.+...+-.    .-.|.
T Consensus       701 d~iqkl~irtvp-l~~~prrI~~q~-~sl~~~v~s~r~e~~~~~~~ee~~~s~l~vlD~nTf~vl~~hef~~~E~~~Si~  778 (1096)
T KOG1897|consen  701 DEIQKLHIRTVP-LGESPRRICYQE-SSLTFGVLSNRIESSAEYYGEEYEVSFLRVLDQNTFEVLSSHEFERNETALSII  778 (1096)
T ss_pred             cchhhcceeeec-CCCChhheEecc-cceEEEEEecccccchhhcCCcceEEEEEEecCCceeEEeeccccccceeeeee
Confidence            64322  23332 233456667765 44444443321              13566666655443322110    12355


Q ss_pred             EEEEeCC-CCEEEEEeC----------CCcEEEEEcCCcccccceeeeccCCCCCCCCCCcEEEEcC-CCcEEEEEecCe
Q 001415          875 GLAFSHA-LNVLVSSGA----------DSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQ-DQIHFLVVHETQ  942 (1082)
Q Consensus       875 ~l~~s~d-~~~l~s~s~----------Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fsp-dg~~l~~~~d~~  942 (1082)
                      +..|..| +.+++.|..          .|.|.|+.+......+...-....      +.+  .+.-- +|+ ++++-...
T Consensus       779 s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~------Gav--~aL~~fngk-llA~In~~  849 (1096)
T KOG1897|consen  779 SCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVK------GAV--YALVEFNGK-LLAGINQS  849 (1096)
T ss_pred             eeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeec------cce--eehhhhCCe-EEEecCcE
Confidence            5568887 777777753          367778877762221111101111      111  22222 344 45556778


Q ss_pred             EEEEEccCcceeeeeccCCCCcceeEEEEcCCCceEEEeecCCcEEEE--ecCCceeeeeeCCCeecCCCCCCCCceeeE
Q 001415          943 LAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVF--SAANLKLRCRINPSAYLPAGVSSSNVHPLV 1020 (1082)
Q Consensus       943 i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~dg~~l~t~s~dg~v~vw--d~~~~~~~~~~~~~~~~~~gh~~~~v~~~~ 1020 (1082)
                      |++|++.+.+.++.-.  .|..++..+...-.|..+++|.-=+.+.+-  +-..|...-.-  ..+.|       -+.++
T Consensus       850 vrLye~t~~~eLr~e~--~~~~~~~aL~l~v~gdeI~VgDlm~Sitll~y~~~eg~f~evA--rD~~p-------~Wmta  918 (1096)
T KOG1897|consen  850 VRLYEWTTERELRIEC--NISNPIIALDLQVKGDEIAVGDLMRSITLLQYKGDEGNFEEVA--RDYNP-------NWMTA  918 (1096)
T ss_pred             EEEEEccccceehhhh--cccCCeEEEEEEecCcEEEEeeccceEEEEEEeccCCceEEee--hhhCc-------cceee
Confidence            9999998886655433  567889999999999999999877776654  44444444322  22322       23445


Q ss_pred             EEEeCCCCCeEEEEecCCcEEEEccCC
Q 001415         1021 IAAHPQEPNEFALGLSDGGVHVFEPLE 1047 (1082)
Q Consensus      1021 ~~~~~~d~~~l~s~~~dg~v~vW~~~~ 1047 (1082)
                      +.+..  .+.++-+..+|.+++-...+
T Consensus       919 veil~--~d~ylgae~~gNlf~v~~d~  943 (1096)
T KOG1897|consen  919 VEILD--DDTYLGAENSGNLFTVRKDS  943 (1096)
T ss_pred             EEEec--CceEEeecccccEEEEEecC
Confidence            66654  45677778888888876654

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=98.51  E-value=2.4e-06  Score=82.07  Aligned_cols=149  Identities=17%  Similarity=0.219  Sum_probs=99.6

Q ss_pred             cCCceeeecccCCeEEEeeccccccCCCCCcccccCccccCCCCcceeecccCCCCCCCCccEEEeecCCCeEEEee---
Q 001415          729 NSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS---  805 (1082)
Q Consensus       729 ~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~l~~~s---  805 (1082)
                      --++.++++..||.+.+++.+. .+...               ......       | ..-.+.++...+.++.++.   
T Consensus        99 ~~~t~V~~~~~dg~~~v~s~~~-~~~~~---------------~~i~~~-------~-~~~as~~~~~~~~~i~s~~~g~  154 (319)
T KOG4714|consen   99 MTDNRVCIGYADGSLAVFSTDK-DLALM---------------SRIPSI-------H-SGSASRKICRHGNSILSGGCGN  154 (319)
T ss_pred             ccCCceEecCCCceEEEEechH-HHhhh---------------hhcccc-------c-ccccccceeecccEEecCCcce
Confidence            3456689999999999887653 11110               000000       1 1111222334455555543   


Q ss_pred             ---CCeEEEEecCCCeeEEEECCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEecccce-eeeeecccccCEEEEEEeCC
Q 001415          806 ---GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDE-VKSKLKGHSKRITGLAFSHA  881 (1082)
Q Consensus       806 ---dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~-~~~~l~~h~~~V~~l~~s~d  881 (1082)
                         -+..+.|+++..+....-......|++++-+|...+++++|+.||.+-+||.+... ....++.|+.+|+.+-|+|.
T Consensus       155 ~n~~d~~~a~~~~p~~t~~~~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk  234 (319)
T KOG4714|consen  155 WNAQDNFYANTLDPIKTLIPSKKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPK  234 (319)
T ss_pred             EeeccceeeecccccccccccccccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCC
Confidence               35577777764433322222233499999999777899999999999999998764 34567899999999999985


Q ss_pred             -CCEEEEEeCCCcEEEEEcCC
Q 001415          882 -LNVLVSSGADSQLCVWSSDG  901 (1082)
Q Consensus       882 -~~~l~s~s~Dg~i~vwd~~~  901 (1082)
                       +..|++++.||.+.-||-.+
T Consensus       235 ~p~~Lft~sedGslw~wdas~  255 (319)
T KOG4714|consen  235 NPEHLFTCSEDGSLWHWDAST  255 (319)
T ss_pred             CchheeEecCCCcEEEEcCCC
Confidence             57799999999999999876

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.48  E-value=4.2e-06  Score=86.69  Aligned_cols=299  Identities=14%  Similarity=0.150  Sum_probs=189.2

Q ss_pred             cccceeEEEEccCCceeeecccCCeEEEeeccccccCCCCCcccccCccccCCCCcceeecccCCCCCCCCccEEEeecC
Q 001415          718 RATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKN  797 (1082)
Q Consensus       718 ~~~~i~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~d  797 (1082)
                      |...|+.+..+ -.+++++++.||.++.|.-..                    .+|........  .|...+.+++.+.|
T Consensus         8 hrd~i~hv~~t-ka~fiiqASlDGh~KFWkKs~--------------------isGvEfVKhFr--aHL~~I~sl~~S~d   64 (558)
T KOG0882|consen    8 HRDVITHVFPT-KAKFIIQASLDGHKKFWKKSR--------------------ISGVEFVKHFR--AHLGVILSLAVSYD   64 (558)
T ss_pred             ccceeeeEeee-hhheEEeeecchhhhhcCCCC--------------------ccceeehhhhH--HHHHHHHhhhcccc
Confidence            66666665443 456789999999999884221                    01211111111  27788899999999


Q ss_pred             CCeEEEee--CCeEEEEecCCCeeEEEECC--CCCCeeEEEEecCCC-cEEE-EEeCCCcEEEEecccce--eeeeeccc
Q 001415          798 DSYVMSAS--GGKISLFNMMTFKTMATFMP--PPPAATFLAFHPQDN-NIIA-IGMDDSSIQIYNVRVDE--VKSKLKGH  869 (1082)
Q Consensus       798 g~~l~~~s--dg~i~iwd~~~~~~~~~~~~--~~~~v~~l~~sp~~~-~~la-sg~~dg~v~iwd~~~~~--~~~~l~~h  869 (1082)
                      |.++.+.+  |..++++|+++...+.-++.  .++. .+...++.+. ..|| +.-.+|.+.++|-...-  ....-.-|
T Consensus        65 g~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~lPg~-a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH  143 (558)
T KOG0882|consen   65 GWLFRSVEDPDHSVKVFDVENFDMINMIKLVDLPGF-AEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLH  143 (558)
T ss_pred             ceeEeeccCcccceeEEEeeccchhhhcccccCCCc-eEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccc
Confidence            99999976  57799999987665533221  1221 2222333111 1333 34467899999976543  33444569


Q ss_pred             ccCEEEEEEeCCCCEEEEEeCCCcEEEEEcCC-cccccceee------eccCCCCCCCCCCcEEEEcCCCcEEEE-EecC
Q 001415          870 SKRITGLAFSHALNVLVSSGADSQLCVWSSDG-WEKQKNRFL------QIPTGRTPTAQSDTRVQFHQDQIHFLV-VHET  941 (1082)
Q Consensus       870 ~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~-~~~~~~~~~------~~~~~~~~~~~~v~~~~fspdg~~l~~-~~d~  941 (1082)
                      ..+|..+.+++-+..++|....|.|.-|..+. .+..+....      ....+.........++.|+|+|..+.+ +.|.
T Consensus       144 ~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~Dr  223 (558)
T KOG0882|consen  144 FSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDR  223 (558)
T ss_pred             cCceEEEEeeccccceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCccc
Confidence            99999999999999999999999999999884 111111100      111111122256789999999999999 7889


Q ss_pred             eEEEEEccCcceeeeeccC------------------------------CC-CcceeEEEEcCCCceEEEeecCCcEEEE
Q 001415          942 QLAIFETTKLECVKQWVPR------------------------------ES-SAPITHATFSCDSQLVYACFLDATVCVF  990 (1082)
Q Consensus       942 ~i~iwd~~~~~~~~~~~~~------------------------------~h-~~~i~~l~~s~dg~~l~t~s~dg~v~vw  990 (1082)
                      .|++++.++|+.++.+...                              .| ...-+.++|...|.+|+-++-= -|+|.
T Consensus       224 kVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~-gikvi  302 (558)
T KOG0882|consen  224 KVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTIL-GIKVI  302 (558)
T ss_pred             EEEEEEeccchhhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeecce-eEEEE
Confidence            9999999999877665311                              12 2334567888899999988643 37899


Q ss_pred             ecCCceeeeeeCCCe---------ecC--CCC-----CCCCceeeEEEEeCCCCCeEEEEecCCcEEEE
Q 001415          991 SAANLKLRCRINPSA---------YLP--AGV-----SSSNVHPLVIAAHPQEPNEFALGLSDGGVHVF 1043 (1082)
Q Consensus       991 d~~~~~~~~~~~~~~---------~~~--~gh-----~~~~v~~~~~~~~~~d~~~l~s~~~dg~v~vW 1043 (1082)
                      ++.++.+...+....         |..  .+|     ......+ .+.+.+ |+.+++++-....++++
T Consensus       303 n~~tn~v~ri~gk~e~ir~~~~sl~q~~~k~~~~~~~~~a~~np-~~~~~~-dpt~~c~a~kk~rfylf  369 (558)
T KOG0882|consen  303 NLDTNTVVRILGKDEAIRFTRLSLYQGAQKSNLAALEVAASNNP-LLEFQK-DPTIVCTAFKKNRFYLF  369 (558)
T ss_pred             EeecCeEEEEeccchhhhhhhHHHHhhhhhccchhhhhhhccCc-ccccCC-CCeEEEeeeecceEEEE
Confidence            999988766543111         000  000     0000111 122445 67788888888888888

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.48  E-value=4.6e-07  Score=62.99  Aligned_cols=39  Identities=31%  Similarity=0.555  Sum_probs=37.1

Q ss_pred             ceeeeeecccccCEEEEEEeCCCCEEEEEeCCCcEEEEE
Q 001415          860 DEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS  898 (1082)
Q Consensus       860 ~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd  898 (1082)
                      |+++..+.+|.+.|++|+|+|++.+|++++.|++|++||
T Consensus         1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence            467889999999999999999999999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=98.47  E-value=0.00031  Score=72.97  Aligned_cols=204  Identities=18%  Similarity=0.212  Sum_probs=127.1

Q ss_pred             cEEEeecCCCeEEEee---CCeEEEEecCCCeeEEEECCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEecc-cceeeee
Q 001415          790 PCFALSKNDSYVMSAS---GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVR-VDEVKSK  865 (1082)
Q Consensus       790 ~~l~~s~dg~~l~~~s---dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~-~~~~~~~  865 (1082)
                      ..+++|.||+++.+..   .-.|.|.|+..++.+..+....    |.-.-|.+.+-+.+-|.||.+.-..+. .|+...+
T Consensus        98 ~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PG----C~~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~  173 (342)
T PF06433_consen   98 NMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPG----CWLIYPSGNRGFSMLCGDGSLLTVTLDADGKEAQK  173 (342)
T ss_dssp             GGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTS----EEEEEEEETTEEEEEETTSCEEEEEETSTSSEEEE
T ss_pred             cceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCCC----EEEEEecCCCceEEEecCCceEEEEECCCCCEeEe
Confidence            3467788888888775   3679999999988888776322    222223233457778889999988887 4544322


Q ss_pred             ----ecccccCE-EEEEEeCCCCEEEEEeCCCcEEEEEcCCcccccceeeeccC------CCCCCCCCCcEEEEcCCCcE
Q 001415          866 ----LKGHSKRI-TGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPT------GRTPTAQSDTRVQFHQDQIH  934 (1082)
Q Consensus       866 ----l~~h~~~V-~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~------~~~~~~~~v~~~~fspdg~~  934 (1082)
                          |..-..++ ..-+++.++..++..+-+|.|+--|+......-........      +-.+  ++-..+++++....
T Consensus       174 ~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrP--GG~Q~~A~~~~~~r  251 (342)
T PF06433_consen  174 STKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRP--GGWQLIAYHAASGR  251 (342)
T ss_dssp             EEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE---SSS-EEEETTTTE
T ss_pred             eccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCC--cceeeeeeccccCe
Confidence                11112222 23345556666666778888888777765432222222111      1111  45567899886665


Q ss_pred             EEE-E---ecC-------eEEEEEccCcceeeeeccCCCCcceeEEEEcCCCc-eEEEee-cCCcEEEEecCCceeeeee
Q 001415          935 FLV-V---HET-------QLAIFETTKLECVKQWVPRESSAPITHATFSCDSQ-LVYACF-LDATVCVFSAANLKLRCRI 1001 (1082)
Q Consensus       935 l~~-~---~d~-------~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~dg~-~l~t~s-~dg~v~vwd~~~~~~~~~~ 1001 (1082)
                      |.+ -   .++       .|-++|+.+++.+..+..   ..++.+|..|.|.+ +|++.+ .++.+.|||..+|+++..+
T Consensus       252 lyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l---~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~  328 (342)
T PF06433_consen  252 LYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPL---EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSI  328 (342)
T ss_dssp             EEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEE---EEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE
T ss_pred             EEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeC---CCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeeh
Confidence            555 2   222       588889999999999886   34688999999887 554443 5789999999999999887


Q ss_pred             C
Q 001415         1002 N 1002 (1082)
Q Consensus      1002 ~ 1002 (1082)
                      .
T Consensus       329 ~  329 (342)
T PF06433_consen  329 E  329 (342)
T ss_dssp             -
T ss_pred             h
Confidence            7

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=98.47  E-value=2.8e-05  Score=81.28  Aligned_cols=227  Identities=15%  Similarity=0.073  Sum_probs=135.5

Q ss_pred             CCcEEEEEccccceeeeeceeeeccCCCCcccccccccCCCCceeEEEEecCCCeEEEEeCCCeEEEEEccCCceeeEEE
Q 001415          380 VGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHL  459 (1082)
Q Consensus       380 dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d~~v~iwd~~~~~~~~~~~  459 (1082)
                      +|.|..||..+|+.+-+..+                 ..-.....+. ..+++.++.+++.++.|..||..+|+.+... 
T Consensus         2 ~g~l~~~d~~tG~~~W~~~~-----------------~~~~~~~~~~-~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~-   62 (238)
T PF13360_consen    2 DGTLSALDPRTGKELWSYDL-----------------GPGIGGPVAT-AVPDGGRVYVASGDGNLYALDAKTGKVLWRF-   62 (238)
T ss_dssp             TSEEEEEETTTTEEEEEEEC-----------------SSSCSSEEET-EEEETTEEEEEETTSEEEEEETTTSEEEEEE-
T ss_pred             CCEEEEEECCCCCEEEEEEC-----------------CCCCCCccce-EEEeCCEEEEEcCCCEEEEEECCCCCEEEEe-
Confidence            68899999999988764321                 1101112211 3346777888889999999999999876533 


Q ss_pred             EeeccccCeeEEEecCCCCceEEEEEeCCCcEEEEEccCCceeEEe-ecCCc---CeEEEeeeecCCceEEEEecCCCcE
Q 001415          460 EIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIF-EGHEA---PVYSVCPHHKENIQFIFSTALDGKI  535 (1082)
Q Consensus       460 ~~~~h~~~V~~l~fs~dg~~~~l~s~s~d~~i~vwd~~~~~~~~~~-~~h~~---~v~~~~~~~~~~~~~l~s~~~dg~i  535 (1082)
                      .+.+   .+....... +.  .++.++.++.|+.+|..+|+.+... .....   ..........  +..++.+..++.|
T Consensus        63 ~~~~---~~~~~~~~~-~~--~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~g~l  134 (238)
T PF13360_consen   63 DLPG---PISGAPVVD-GG--RVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVD--GDRLYVGTSSGKL  134 (238)
T ss_dssp             ECSS---CGGSGEEEE-TT--EEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEE--TTEEEEEETCSEE
T ss_pred             eccc---cccceeeec-cc--ccccccceeeeEecccCCcceeeeeccccccccccccccCceEe--cCEEEEEeccCcE
Confidence            2222   211112223 34  3566667889999999999999884 33211   1112222222  3578888889999


Q ss_pred             EEEecCCCCceeeecCCCCce-EEEEEccCCCeeeecccccceeEEEecCCCCEEEEEeCCCe-EEEEECCCcceEEEEe
Q 001415          536 KAWLYDNLGSRVDYEAPGRWC-TTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFS-IKFWDMDSVQLLTSID  613 (1082)
Q Consensus       536 ~iwd~~~~~~~~~~~~~~~~v-~~~~~s~d~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~-i~iwd~~~~~~~~~~~  613 (1082)
                      ..+|.+++............. ..+....+           ....+.+. ++ .++.++.++. +.+ |+.+++.+....
T Consensus       135 ~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~-----------~~~~~~~~-~~-~v~~~~~~g~~~~~-d~~tg~~~w~~~  200 (238)
T PF13360_consen  135 VALDPKTGKLLWKYPVGEPRGSSPISSFSD-----------INGSPVIS-DG-RVYVSSGDGRVVAV-DLATGEKLWSKP  200 (238)
T ss_dssp             EEEETTTTEEEEEEESSTT-SS--EEEETT-----------EEEEEECC-TT-EEEEECCTSSEEEE-ETTTTEEEEEEC
T ss_pred             EEEecCCCcEEEEeecCCCCCCcceeeecc-----------cccceEEE-CC-EEEEEcCCCeEEEE-ECCCCCEEEEec
Confidence            999999888776665533221 00000000           01111122 23 5666776775 555 999998665333


Q ss_pred             cCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEecCCcc
Q 001415          614 ADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIR  652 (1082)
Q Consensus       614 ~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~iwd~~~~~~  652 (1082)
                       ..   .+.. ....++..|++++.++.+..||+.+++.
T Consensus       201 -~~---~~~~-~~~~~~~~l~~~~~~~~l~~~d~~tG~~  234 (238)
T PF13360_consen  201 -IS---GIYS-LPSVDGGTLYVTSSDGRLYALDLKTGKV  234 (238)
T ss_dssp             -SS----ECE-CEECCCTEEEEEETTTEEEEEETTTTEE
T ss_pred             -CC---CccC-CceeeCCEEEEEeCCCEEEEEECCCCCE
Confidence             21   1222 2456778888888999999999999843

...

>KOG0396 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.47  E-value=7.9e-07  Score=90.10  Aligned_cols=121  Identities=12%  Similarity=0.169  Sum_probs=100.2

Q ss_pred             hHHHHHHHHHHHhhcChHHHHHHHHHhcCCC--------ccHHHHHHHhhccCHHHHHHHhccCccccCcccchhhHHHH
Q 001415            5 SRELVFLILQFLDEEKFKETVHKLEQESGFF--------FNMKYFEDEVHNGNWDDVEKYLSGFTKVDDNRYSMKIFFEI   76 (1082)
Q Consensus         5 ~~~~~~li~q~L~~~g~~~s~~~L~~Esg~~--------~~~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~l   76 (1082)
                      +.-+.|+|..||..+||.+||..|-++|++.        .++..++++|+.|+...|+...+.-+..-. +....+-|.+
T Consensus       115 r~~l~r~vvdhmlr~gy~~~A~~L~K~s~ledlvD~Dv~~~~~~I~~sll~~~l~~~Lswc~ehk~~Lk-K~~S~lEf~l  193 (389)
T KOG0396|consen  115 RNKLDRFVVDHMLRNGYFGAAVLLGKKSQLEDLVDSDVYKRAYGIRDSLLAGELEPALSWCKEHKVELK-KEESSLEFQL  193 (389)
T ss_pred             HHHHHHHHHHHHHHcCchhHHHHHHHhhhhhhhHhHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH-hccchhhhHH
Confidence            4557899999999999999999999999985        137788999999999999877776411111 1122488999


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHhccccccccCHHHHHHHHHHhccccccc
Q 001415           77 RKQKYLEALDKHDRAKAVEILVKDLKVFSTFNEELFKEITQLLTLENFRE  126 (1082)
Q Consensus        77 ~~~~~lell~~~~~~~a~~~l~~~l~~~~~~~~~~~~~l~~ll~~~~~~~  126 (1082)
                      +.|.|+||++.+++.+|+.+.++.+.|....+.+.++....+|.++....
T Consensus       194 RlQefIELi~~~~~~~Ai~~akk~f~~~~~~~~~~Lk~a~g~laF~~~t~  243 (389)
T KOG0396|consen  194 RLQEFIELIKVDNYDKAIAFAKKHFAPWAKSHKSDLKLAMGLLAFPKYTS  243 (389)
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhhcCccccC
Confidence            99999999999999999999999999998888899998888888765443

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=98.43  E-value=0.00064  Score=80.17  Aligned_cols=238  Identities=13%  Similarity=0.119  Sum_probs=133.1

Q ss_pred             cceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEecCCccce
Q 001415          575 RSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLL  654 (1082)
Q Consensus       575 ~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~iwd~~~~~~~~  654 (1082)
                      ..+.++.|..+.+.++.+..+|.|.+-|..+......-....   .|.+++|+||++.++..+..+++.+-.-. - .++
T Consensus        69 ~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~eivg~vd~---GI~aaswS~Dee~l~liT~~~tll~mT~~-f-~~i  143 (1265)
T KOG1920|consen   69 DEIVSVQFLADTNSICVITALGDIILVDPETLELEIVGNVDN---GISAASWSPDEELLALITGRQTLLFMTKD-F-EPI  143 (1265)
T ss_pred             cceEEEEEecccceEEEEecCCcEEEEcccccceeeeeeccC---ceEEEeecCCCcEEEEEeCCcEEEEEecc-c-cch
Confidence            467777788888889999999999999887765433322222   58999999999999999988887664321 1 111


Q ss_pred             eecccccccccccccccCCCCccccCCCCceeeeccCCceeEEEecccCCCCccccccc---cCcccccceeEEEEccCC
Q 001415          655 RTFENLAYDASRTSENSKNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRL---PENLRATKISRLIFTNSG  731 (1082)
Q Consensus       655 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~---~~~~~~~~i~~~~~s~~~  731 (1082)
                      ..-.-+...               .+.+ ..+.++....-.-+.-..+...........   +...-.+.-..+.|-.||
T Consensus       144 ~E~~L~~d~---------------~~~s-k~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg  207 (1265)
T KOG1920|consen  144 AEKPLDADD---------------ERKS-KFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDG  207 (1265)
T ss_pred             hcccccccc---------------cccc-ccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCC
Confidence            000000000               0111 112222222111222111100000000000   000012233468999999


Q ss_pred             ceeeec-----ccCCeEEEeeccccccCCCCCcccccCccccCCCCcceeecccCCCCCCCCccEEEeecCCCeEEEee-
Q 001415          732 NAILAL-----ASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-  805 (1082)
Q Consensus       732 ~~l~~~-----~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~l~~~s-  805 (1082)
                      +++++.     .....+++||-. +..+..+                         ....+.-.+++|-|.|.++++-. 
T Consensus       208 ~~fAVs~~~~~~~~RkirV~drE-g~Lns~s-------------------------e~~~~l~~~LsWkPsgs~iA~iq~  261 (1265)
T KOG1920|consen  208 EYFAVSFVESETGTRKIRVYDRE-GALNSTS-------------------------EPVEGLQHSLSWKPSGSLIAAIQC  261 (1265)
T ss_pred             cEEEEEEEeccCCceeEEEeccc-chhhccc-------------------------CcccccccceeecCCCCeEeeeee
Confidence            988772     233678888654 1111100                         01233345799999999998763 


Q ss_pred             ---CCeEEEEecCCC---eeEEEECCCCCCeeEEEEecCCCcEEEE---EeCCCcEEEEecccc
Q 001415          806 ---GGKISLFNMMTF---KTMATFMPPPPAATFLAFHPQDNNIIAI---GMDDSSIQIYNVRVD  860 (1082)
Q Consensus       806 ---dg~i~iwd~~~~---~~~~~~~~~~~~v~~l~~sp~~~~~las---g~~dg~v~iwd~~~~  860 (1082)
                         ++.|.+|.-...   .....+.....+|..++|+. ++.+||+   ......|++|-+.+.
T Consensus       262 ~~sd~~IvffErNGL~hg~f~l~~p~de~~ve~L~Wns-~sdiLAv~~~~~e~~~v~lwt~~Ny  324 (1265)
T KOG1920|consen  262 KTSDSDIVFFERNGLRHGEFVLPFPLDEKEVEELAWNS-NSDILAVVTSNLENSLVQLWTTGNY  324 (1265)
T ss_pred             cCCCCcEEEEecCCccccccccCCcccccchheeeecC-CCCceeeeecccccceEEEEEecCe
Confidence               567999885422   11122233334489999999 8899988   444556999988763

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=98.40  E-value=9.5e-07  Score=88.26  Aligned_cols=151  Identities=14%  Similarity=0.153  Sum_probs=111.7

Q ss_pred             EEEeCCCcEEEEecccceeeeeecccccCEEEEEEeCCCCEEEEEeCCCcEEEEEcCCcccccceeeeccCCCCCCCCCC
Q 001415          844 AIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSD  923 (1082)
Q Consensus       844 asg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v  923 (1082)
                      ++.+.+-.|-+-++.+|-. ..|. .++.|.++.|...++++..|...|.|.+.|+..+......+..... |.   ..|
T Consensus       228 fs~G~sqqv~L~nvetg~~-qsf~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rly-h~---Ssv  301 (425)
T KOG2695|consen  228 FSVGLSQQVLLTNVETGHQ-QSFQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLY-HD---SSV  301 (425)
T ss_pred             ecccccceeEEEEeecccc-cccc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEE-cC---cch
Confidence            4455577888889888743 3333 5678999999988999999999999999999986333222222221 11   456


Q ss_pred             cEEEEcC-CCcEEEE-EecCeEEEEEccCcce---eeeeccCCC--CcceeEEEEcCCCceEEEeecCCcEEEEecCCce
Q 001415          924 TRVQFHQ-DQIHFLV-VHETQLAIFETTKLEC---VKQWVPRES--SAPITHATFSCDSQLVYACFLDATVCVFSAANLK  996 (1082)
Q Consensus       924 ~~~~fsp-dg~~l~~-~~d~~i~iwd~~~~~~---~~~~~~~~h--~~~i~~l~~s~dg~~l~t~s~dg~v~vwd~~~~~  996 (1082)
                      +++..-. ++.+|.+ +.+|.|++||.+.-++   +.++.  ||  ...-.-+.+.+....++++++|...+||.+..|.
T Consensus       302 tslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYe--GHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~gh  379 (425)
T KOG2695|consen  302 TSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYE--GHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGH  379 (425)
T ss_pred             hhhhhhccccceEeeccCcCceeEeeehhhhcccceeeee--cccccccccccccccccceEEEccCeeEEEEEecccCc
Confidence            6666555 5666666 7899999999988887   77777  55  3334444566777889999999999999999999


Q ss_pred             eeeeeC
Q 001415          997 LRCRIN 1002 (1082)
Q Consensus       997 ~~~~~~ 1002 (1082)
                      +++.+.
T Consensus       380 Ll~tip  385 (425)
T KOG2695|consen  380 LLCTIP  385 (425)
T ss_pred             eeeccC
Confidence            999887

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=98.39  E-value=3.2e-07  Score=102.16  Aligned_cols=199  Identities=17%  Similarity=0.196  Sum_probs=142.4

Q ss_pred             CeeEEEECCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEecccceeeeeecccccCEEEEEEeCCCCEEEEEeCCC--cE
Q 001415          817 FKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADS--QL  894 (1082)
Q Consensus       817 ~~~~~~~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg--~i  894 (1082)
                      .+..+++..+....+|++|+- +.+.|++|+..|.|++|++.+|.......+|.++|+-+.-+.||..+.+.+.-.  -.
T Consensus      1091 Fr~w~~frd~~~~fTc~afs~-~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~Pls 1169 (1516)
T KOG1832|consen 1091 FRSWRSFRDETALFTCIAFSG-GTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLS 1169 (1516)
T ss_pred             cccchhhhccccceeeEEeec-CCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchH
Confidence            355567777888999999999 889999999999999999999999999999999999999999998877665433  46


Q ss_pred             EEEEcCCcccccceeeeccCCCCCCCCCCcEEEEcCCCcEEEEE-ecCeEEEEEccCcceeeeeccC--CCCcceeEEEE
Q 001415          895 CVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQLAIFETTKLECVKQWVPR--ESSAPITHATF  971 (1082)
Q Consensus       895 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~-~d~~i~iwd~~~~~~~~~~~~~--~h~~~i~~l~~  971 (1082)
                      .+|++.+--    .....+       ....++.|+.....-+.+ ......+||+.++....++..+  +.+..-+...|
T Consensus      1170 aLW~~~s~~----~~~Hsf-------~ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~F 1238 (1516)
T KOG1832|consen 1170 ALWDASSTG----GPRHSF-------DEDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHF 1238 (1516)
T ss_pred             HHhcccccc----Cccccc-------cccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhcccccc
Confidence            799987711    111111       345788998875555554 4457899999999887774422  12333477899


Q ss_pred             cCCCceEEEeecCCcEEEEecCCceeeeeeCCCeecCCCCCCCCceeeEEEEeCCCCCeEEEEecCCcEEEEccCCCC
Q 001415          972 SCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESE 1049 (1082)
Q Consensus       972 s~dg~~l~t~s~dg~v~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~~~~~~~d~~~l~s~~~dg~v~vW~~~~~~ 1049 (1082)
                      ||+.++++   .||.  +||+...+-+.++..-..           ...=.|+|+ |..++.-+     -|||+.+-.
T Consensus      1239 sP~D~LIl---ndGv--LWDvR~~~aIh~FD~ft~-----------~~~G~FHP~-g~eVIINS-----EIwD~RTF~ 1294 (1516)
T KOG1832|consen 1239 SPCDTLIL---NDGV--LWDVRIPEAIHRFDQFTD-----------YGGGGFHPS-GNEVIINS-----EIWDMRTFK 1294 (1516)
T ss_pred             CCCcceEe---eCce--eeeeccHHHHhhhhhhee-----------cccccccCC-CceEEeec-----hhhhhHHHH
Confidence            99999887   4664  899998887776652111           012346674 55555444     466666544

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=98.38  E-value=7.7e-05  Score=87.58  Aligned_cols=239  Identities=10%  Similarity=0.126  Sum_probs=138.8

Q ss_pred             ccceeEEEEccCCceeeecccCCeEEEeeccccccCCCCCcccccCccccCCCCcceeecccCCCCCCCCccEEEeecCC
Q 001415          719 ATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKND  798 (1082)
Q Consensus       719 ~~~i~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg  798 (1082)
                      ...|.++.|..+...++.+...|.|.+-|...                      ......    ..-...|.+++||||+
T Consensus        68 d~~i~s~~fl~d~~~i~v~~~~G~iilvd~et----------------------~~~eiv----g~vd~GI~aaswS~De  121 (1265)
T KOG1920|consen   68 DDEIVSVQFLADTNSICVITALGDIILVDPET----------------------LELEIV----GNVDNGISAASWSPDE  121 (1265)
T ss_pred             CcceEEEEEecccceEEEEecCCcEEEEcccc----------------------cceeee----eeccCceEEEeecCCC
Confidence            36899999999999999999999888764332                      221111    0146789999999999


Q ss_pred             CeEEEeeCCeEEEEecCCCeeEEEECCC-----CCCeeEEEEecCCCcEEEEEeCCCcEEEEecccc-eeeeeecccccC
Q 001415          799 SYVMSASGGKISLFNMMTFKTMATFMPP-----PPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVD-EVKSKLKGHSKR  872 (1082)
Q Consensus       799 ~~l~~~sdg~i~iwd~~~~~~~~~~~~~-----~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~-~~~~~l~~h~~~  872 (1082)
                      +.++..+.+...++...+..++....-+     .+....+-|-. ....+ -|+ .|.....+.... +......-|.. 
T Consensus       122 e~l~liT~~~tll~mT~~f~~i~E~~L~~d~~~~sk~v~VGwGr-keTqf-rgs-~gr~~~~~~~~~ek~~~~~~~~~~-  197 (1265)
T KOG1920|consen  122 ELLALITGRQTLLFMTKDFEPIAEKPLDADDERKSKFVNVGWGR-KETQF-RGS-EGRQAARQKIEKEKALEQIEQDDH-  197 (1265)
T ss_pred             cEEEEEeCCcEEEEEeccccchhccccccccccccccceecccc-cceee-ecc-hhhhcccccccccccccchhhccC-
Confidence            9999988655444444444444332211     12223333322 11111 111 111111111100 00011111222 


Q ss_pred             EEEEEEeCCCCEEEEE-----eCCCcEEEEEcCCcccccceeeeccCCCCCCCCCCcEEEEcCCCcEEEE----EecCeE
Q 001415          873 ITGLAFSHALNVLVSS-----GADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV----VHETQL  943 (1082)
Q Consensus       873 V~~l~~s~d~~~l~s~-----s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~----~~d~~i  943 (1082)
                      =++|.|--||+++|+.     ...+.|+|||-+. .....  -....      +.-.+++|-|.|..+++    .+|+.|
T Consensus       198 ~~~IsWRgDg~~fAVs~~~~~~~~RkirV~drEg-~Lns~--se~~~------~l~~~LsWkPsgs~iA~iq~~~sd~~I  268 (1265)
T KOG1920|consen  198 KTSISWRGDGEYFAVSFVESETGTRKIRVYDREG-ALNST--SEPVE------GLQHSLSWKPSGSLIAAIQCKTSDSDI  268 (1265)
T ss_pred             CceEEEccCCcEEEEEEEeccCCceeEEEecccc-hhhcc--cCccc------ccccceeecCCCCeEeeeeecCCCCcE
Confidence            3568999999999883     2237899999883 22110  01111      22368999999999998    256678


Q ss_pred             EEEEccCcceeeeecc--CCCCcceeEEEEcCCCceEEE---eecCCcEEEEecCCcee
Q 001415          944 AIFETTKLECVKQWVP--RESSAPITHATFSCDSQLVYA---CFLDATVCVFSAANLKL  997 (1082)
Q Consensus       944 ~iwd~~~~~~~~~~~~--~~h~~~i~~l~~s~dg~~l~t---~s~dg~v~vwd~~~~~~  997 (1082)
                      .+|.-+ |-....+..  +....++..++|+.++..||+   ......|++|-+.+..-
T Consensus       269 vffErN-GL~hg~f~l~~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~NyhW  326 (1265)
T KOG1920|consen  269 VFFERN-GLRHGEFVLPFPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGNYHW  326 (1265)
T ss_pred             EEEecC-CccccccccCCcccccchheeeecCCCCceeeeecccccceEEEEEecCeEE
Confidence            888753 322222221  122445999999999999998   44445599999887653

>PRK02888 nitrous-oxide reductase; Validated

Probab=98.36  E-value=2.9e-05  Score=86.99  Aligned_cols=224  Identities=12%  Similarity=0.050  Sum_probs=136.9

Q ss_pred             cCCCeEEEee--CCeEEEEecCCCeeEEEECCCC-CCee-------------------EEEEecCCCcEEE-EEeCCCcE
Q 001415          796 KNDSYVMSAS--GGKISLFNMMTFKTMATFMPPP-PAAT-------------------FLAFHPQDNNIIA-IGMDDSSI  852 (1082)
Q Consensus       796 ~dg~~l~~~s--dg~i~iwd~~~~~~~~~~~~~~-~~v~-------------------~l~~sp~~~~~la-sg~~dg~v  852 (1082)
                      .||+|+..-.  ..+|...+++..++-+.+.... ..+.                   .+-++| |++.+. ..-..+.+
T Consensus       139 ydGr~~findk~n~Rvari~l~~~~~~~i~~iPn~~~~Hg~~~~~~p~t~yv~~~~e~~~Plpn-DGk~l~~~~ey~~~v  217 (635)
T PRK02888        139 YDGRYLFINDKANTRVARIRLDVMKCDKITELPNVQGIHGLRPQKIPRTGYVFCNGEFRIPLPN-DGKDLDDPKKYRSLF  217 (635)
T ss_pred             cceeEEEEecCCCcceEEEECccEeeceeEeCCCccCccccCccccCCccEEEeCcccccccCC-CCCEeecccceeEEE
Confidence            5888888876  3566666766655544432111 1122                   223444 454432 22234567


Q ss_pred             EEEecccceeeeeecccccCEEEEEEeCCCCEEEEEeCCCc--EEEEEcCCcccccceeeeccCCCCCCCCCCcEEEEcC
Q 001415          853 QIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQ--LCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQ  930 (1082)
Q Consensus       853 ~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~--i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fsp  930 (1082)
                      .+.|..+.+....+.-- +....+++++||+++++.+.+..  ..+-.+...+......+...          ..-++.+
T Consensus       218 SvID~etmeV~~qV~Vd-gnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~----------~iea~vk  286 (635)
T PRK02888        218 TAVDAETMEVAWQVMVD-GNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIA----------RIEEAVK  286 (635)
T ss_pred             EEEECccceEEEEEEeC-CCcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchH----------HHHHhhh
Confidence            77787776666555432 24466889999999988863221  12222222111000000000          0113456


Q ss_pred             CCcEEEEEecCeEEEEEccC-----cceeeeeccCCCCcceeEEEEcCCCceEEEee-cCCcEEEEecCCcee-------
Q 001415          931 DQIHFLVVHETQLAIFETTK-----LECVKQWVPRESSAPITHATFSCDSQLVYACF-LDATVCVFSAANLKL-------  997 (1082)
Q Consensus       931 dg~~l~~~~d~~i~iwd~~~-----~~~~~~~~~~~h~~~i~~l~~s~dg~~l~t~s-~dg~v~vwd~~~~~~-------  997 (1082)
                      +|++... .++.|.+.|..+     .+.+..+..   ......+.+||||+++++++ .+.+|.|.|+.+.+.       
T Consensus       287 dGK~~~V-~gn~V~VID~~t~~~~~~~v~~yIPV---GKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~  362 (635)
T PRK02888        287 AGKFKTI-GGSKVPVVDGRKAANAGSALTRYVPV---PKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIK  362 (635)
T ss_pred             CCCEEEE-CCCEEEEEECCccccCCcceEEEEEC---CCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCC
Confidence            7887665 467899999988     344444443   45678899999999987776 588999999998663       


Q ss_pred             -----eeeeCCCeecCCCCCCCCceeeEEEEeCCCCCeEEEEecCCcEEEEccCC
Q 001415          998 -----RCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLE 1047 (1082)
Q Consensus       998 -----~~~~~~~~~~~~gh~~~~v~~~~~~~~~~d~~~l~s~~~dg~v~vW~~~~ 1047 (1082)
                           ..++.    +  |     ..|+...|.+ +|+...+---|..|..|++..
T Consensus       363 ~~~~vvaeve----v--G-----lGPLHTaFDg-~G~aytslf~dsqv~kwn~~~  405 (635)
T PRK02888        363 PRDAVVAEPE----L--G-----LGPLHTAFDG-RGNAYTTLFLDSQIVKWNIEA  405 (635)
T ss_pred             ccceEEEeec----c--C-----CCcceEEECC-CCCEEEeEeecceeEEEehHH
Confidence                 33333    1  3     4577899988 578888889999999999987

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=98.31  E-value=1.1e-05  Score=90.96  Aligned_cols=180  Identities=16%  Similarity=0.176  Sum_probs=131.2

Q ss_pred             CCeEEEee-CCeEEEEecCCCeeEEEECCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEecccceeeeeecccccCEEEE
Q 001415          798 DSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGL  876 (1082)
Q Consensus       798 g~~l~~~s-dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l  876 (1082)
                      +..++.|+ ...+..+|+.+.+..+...-..+.|+-+..   +++++.+|...|+|.+-|..+.+.+.++.+|++.|..+
T Consensus       147 ~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~---Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDf  223 (1118)
T KOG1275|consen  147 PSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRY---NNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDF  223 (1118)
T ss_pred             CcceeecchhhheeeeecccceeeeeeeccCCceEEEEe---cCcEEEeecccceEEeecCCcCceeeeeeccccceeee
Confidence            33444454 678899999988887777655556666665   66899999999999999999999999999999999876


Q ss_pred             EEeCCCCEEEEEeC---------CCcEEEEEcCCcccccceeeeccCCCCCCCCCCcEEEEcCC--CcEEEEEecCeEEE
Q 001415          877 AFSHALNVLVSSGA---------DSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQD--QIHFLVVHETQLAI  945 (1082)
Q Consensus       877 ~~s~d~~~l~s~s~---------Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspd--g~~l~~~~d~~i~i  945 (1082)
                      ..  .|+.|+++|.         |.-|+|||++.....  ..++.+.+       ..-+.|.|.  .+..+++..|+..+
T Consensus       224 Dv--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral--~PI~~~~~-------P~flrf~Psl~t~~~V~S~sGq~q~  292 (1118)
T KOG1275|consen  224 DV--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRAL--SPIQFPYG-------PQFLRFHPSLTTRLAVTSQSGQFQF  292 (1118)
T ss_pred             ec--cCCeEEEeecccccccccccchhhhhhhhhhhcc--CCcccccC-------chhhhhcccccceEEEEecccceee
Confidence            65  5899999876         456899999874321  12222222       245777775  34444577888888


Q ss_pred             EEccCcce--eeeeccCCCCcceeEEEEcCCCceEEEeecCCcEEEEe
Q 001415          946 FETTKLEC--VKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFS  991 (1082)
Q Consensus       946 wd~~~~~~--~~~~~~~~h~~~i~~l~~s~dg~~l~t~s~dg~v~vwd  991 (1082)
                      -|..+...  ...+......+.+.++++|++|..||.|..+|.|.+|.
T Consensus       293 vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa  340 (1118)
T KOG1275|consen  293 VDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA  340 (1118)
T ss_pred             ccccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence            88433221  12222222345699999999999999999999999997

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.31  E-value=5.3e-06  Score=86.00  Aligned_cols=213  Identities=13%  Similarity=0.095  Sum_probs=151.5

Q ss_pred             CCCCeeEEEEecCCCcEEEEEeCCCcEEEEeccc--c-eeeeeecccccCEEEEEEeCCCCEEEEEeC-CCcEEEEEcCC
Q 001415          826 PPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRV--D-EVKSKLKGHSKRITGLAFSHALNVLVSSGA-DSQLCVWSSDG  901 (1082)
Q Consensus       826 ~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~--~-~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~-Dg~i~vwd~~~  901 (1082)
                      |...|+.+.-+.  ..++.+++.||.++.|.-..  | +.+..+..|-+.|.+++.+.|+..+.|.+. |..++++|+..
T Consensus         8 hrd~i~hv~~tk--a~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn   85 (558)
T KOG0882|consen    8 HRDVITHVFPTK--AKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVEN   85 (558)
T ss_pred             ccceeeeEeeeh--hheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeec
Confidence            566677776654  57999999999999997543  2 455667889999999999999999999777 99999999988


Q ss_pred             cccccceeeeccCCCCCCCCCCcEEEEcCC-Cc-EEEEE--ecCeEEEEEccCcceeeeeccCCCCcceeEEEEcCCCce
Q 001415          902 WEKQKNRFLQIPTGRTPTAQSDTRVQFHQD-QI-HFLVV--HETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQL  977 (1082)
Q Consensus       902 ~~~~~~~~~~~~~~~~~~~~~v~~~~fspd-g~-~l~~~--~d~~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~dg~~  977 (1082)
                      .......-+..+.+       -..+..++. -. .++++  .++.+.++|-....|.......-|..+|..+.+.+-+..
T Consensus        86 ~DminmiKL~~lPg-------~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds  158 (558)
T KOG0882|consen   86 FDMINMIKLVDLPG-------FAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDS  158 (558)
T ss_pred             cchhhhcccccCCC-------ceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccc
Confidence            44321111111111       122222332 12 34443  678999999887776666666679999999999999999


Q ss_pred             EEEeecCCcEEEEecCC------ceeeeeeCCCeecCCCCCCCCceeeEEEEeCCCCCeEEEEecCCcEEEEccCCCC
Q 001415          978 VYACFLDATVCVFSAAN------LKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESE 1049 (1082)
Q Consensus       978 l~t~s~dg~v~vwd~~~------~~~~~~~~~~~~~~~gh~~~~v~~~~~~~~~~d~~~l~s~~~dg~v~vW~~~~~~ 1049 (1082)
                      +++....|.|.-|..+.      .++.-.+.....+-.- ...-..+.++.|+| ++..+.+-+.|..|++++..+|+
T Consensus       159 ~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f-~K~Kt~pts~Efsp-~g~qistl~~DrkVR~F~~KtGk  234 (558)
T KOG0882|consen  159 AVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGF-PKAKTEPTSFEFSP-DGAQISTLNPDRKVRGFVFKTGK  234 (558)
T ss_pred             eeeccccceeEeecCCCcccCccccccccccccchhhcc-cccccCccceEEcc-ccCcccccCcccEEEEEEeccch
Confidence            99998899999999873      2222222211111111 11114467899999 68999999999999999999998

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.28  E-value=7.2e-05  Score=76.91  Aligned_cols=81  Identities=14%  Similarity=0.199  Sum_probs=70.9

Q ss_pred             cccCCCCceeEEEEecCCC-eEEEEeCCCeEEEEEccCCceeeEEEEeeccccCeeEEEecCCCCceEEEEEeCCCcEEE
Q 001415          415 LVKDPGVSVNRVIWSPDGS-LFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKV  493 (1082)
Q Consensus       415 ~~~~h~~~V~~l~~spdg~-~las~~~d~~v~iwd~~~~~~~~~~~~~~~h~~~V~~l~fs~dg~~~~l~s~s~d~~i~v  493 (1082)
                      ++.+|+..|..++|||..+ ++..++.+..|+|.|+++...+.   .+..| ..+++++|.-|... +++.|-..|.|.|
T Consensus       188 ~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vs---sy~a~-~~~wSC~wDlde~h-~IYaGl~nG~Vlv  262 (463)
T KOG1645|consen  188 ILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVS---SYIAY-NQIWSCCWDLDERH-VIYAGLQNGMVLV  262 (463)
T ss_pred             cccccchhhhhhccCccccceeeeeccCceEEEEecccceeee---heecc-CCceeeeeccCCcc-eeEEeccCceEEE
Confidence            6889999999999999777 78889999999999999987665   55566 78999999999877 8999999999999


Q ss_pred             EEccCCc
Q 001415          494 WDATNGA  500 (1082)
Q Consensus       494 wd~~~~~  500 (1082)
                      +|++..+
T Consensus       263 yD~R~~~  269 (463)
T KOG1645|consen  263 YDMRQPE  269 (463)
T ss_pred             EEccCCC
Confidence            9998653

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.28  E-value=2.5e-06  Score=59.27  Aligned_cols=34  Identities=24%  Similarity=0.604  Sum_probs=32.5

Q ss_pred             cccCCCCceeEEEEecCCCeEEEEeCCCeEEEEE
Q 001415          415 LVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYS  448 (1082)
Q Consensus       415 ~~~~h~~~V~~l~~spdg~~las~~~d~~v~iwd  448 (1082)
                      .+.+|.+.|++++|+|++.+||+++.|+.|++||
T Consensus         6 ~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    6 TFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             EEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence            3789999999999999999999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=98.26  E-value=0.0012  Score=72.92  Aligned_cols=300  Identities=14%  Similarity=0.175  Sum_probs=146.9

Q ss_pred             ecCCCeEEEEE--------cCCCcEEEEEccccceeeeeceeeeccCCCCcccccccccCCCCceeEEEEecCCCeEEEE
Q 001415          367 HPVQQTLLLVG--------TNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVA  438 (1082)
Q Consensus       367 spdg~~llasg--------s~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~  438 (1082)
                      ||||+++|+.-        +..+.+.|||+++++...                    +......+....|||||+++|..
T Consensus         1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~--------------------l~~~~~~~~~~~~sP~g~~~~~v   60 (353)
T PF00930_consen    1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITP--------------------LTPPPPKLQDAKWSPDGKYIAFV   60 (353)
T ss_dssp             -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEE--------------------SS-EETTBSEEEE-SSSTEEEEE
T ss_pred             CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEE--------------------CcCCccccccceeecCCCeeEEE
Confidence            78999766532        224678899998876654                    22225688999999999999998


Q ss_pred             eCCCeEEEEEccCCceeeEEEEeecc----------------ccCeeEEEecCCCCceEEEEEe-CCCcEEEEEccCCce
Q 001415          439 YSRHIVQIYSYHGGDEVRQHLEIDAH----------------VGGVNDIAFSHPNKQLCVITCG-DDKTIKVWDATNGAK  501 (1082)
Q Consensus       439 ~~d~~v~iwd~~~~~~~~~~~~~~~h----------------~~~V~~l~fs~dg~~~~l~s~s-~d~~i~vwd~~~~~~  501 (1082)
                      . ++.|.+++..++...+.  +..|-                -+.-..+-|||||++  |+... ++..|+.+.+..   
T Consensus        61 ~-~~nly~~~~~~~~~~~l--T~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~--la~~~~d~~~v~~~~~~~---  132 (353)
T PF00930_consen   61 R-DNNLYLRDLATGQETQL--TTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKY--LAFLRFDEREVPEYPLPD---  132 (353)
T ss_dssp             E-TTEEEEESSTTSEEEES--ES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSE--EEEEEEE-TTS-EEEEEE---
T ss_pred             e-cCceEEEECCCCCeEEe--ccccceeEEcCccceeccccccccccceEECCCCCE--EEEEEECCcCCceEEeec---
Confidence            5 57899999887754331  22220                112356889999995  44433 344444443211   


Q ss_pred             eEEeecCCc---CeEEEeeeecCCceEEEEecCCC--cEEEEecCCCCcee-ee----cCCCCceEEEEEccCCCeeeec
Q 001415          502 QYIFEGHEA---PVYSVCPHHKENIQFIFSTALDG--KIKAWLYDNLGSRV-DY----EAPGRWCTTMAYSADGTRTYQG  571 (1082)
Q Consensus       502 ~~~~~~h~~---~v~~~~~~~~~~~~~l~s~~~dg--~i~iwd~~~~~~~~-~~----~~~~~~v~~~~~s~d~~~~~~~  571 (1082)
                         ......   .+..+.. |.+       |...-  .+.++|+.+++... ..    ......+..+.|.+++.     
T Consensus       133 ---~~~~~~~yp~~~~~~Y-Pk~-------G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~-----  196 (353)
T PF00930_consen  133 ---YSPPDSQYPEVESIRY-PKA-------GDPNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGK-----  196 (353)
T ss_dssp             ---ESSSTESS-EEEEEE---BT-------TS---EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTE-----
T ss_pred             ---cCCccccCCccccccc-CCC-------CCcCCceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCc-----
Confidence               111111   1222222 111       11112  24556776554321 11    12233455555555554     


Q ss_pred             ccccceeEEEecCCCCEEEE--Ee---CCCeEEEEECCCcceEEEEec--CCCCCCcCeEEEc-CCC-CEEEEEECCCcE
Q 001415          572 FRKRSLGVVQFDTTKNRFLA--AG---DDFSIKFWDMDSVQLLTSIDA--DGGLPASPRIRFN-KDG-CLLAVSTNDNGI  642 (1082)
Q Consensus       572 ~~~~~i~~~~~~~~~~~l~~--~~---~dg~i~iwd~~~~~~~~~~~~--~~~~~~i~~~~~s-~dg-~~l~~~~~dg~i  642 (1082)
                                      .++.  ..   ....+.+.|..++........  .+-...-....+. +++ .+|.....+|.-
T Consensus       197 ----------------~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~  260 (353)
T PF00930_consen  197 ----------------RLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDGYR  260 (353)
T ss_dssp             ----------------EEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSE
T ss_pred             ----------------EEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcCCCc
Confidence                            2222  12   123355667766655333322  2211222355554 544 455556677776


Q ss_pred             EEEEecCCccceeecccccccccccccccCCCCccccCCCCcee-eecc--CCceeEEEecccCCCCccccccccCcccc
Q 001415          643 KILATSDGIRLLRTFENLAYDASRTSENSKNGDVRSLADVKPRI-TEES--NDKSKVWKLTELSEPNQCRSLRLPENLRA  719 (1082)
Q Consensus       643 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~-~~~~--d~~i~iw~~~~~~~~~~~~~~~~~~~~~~  719 (1082)
                      +++-........+.+......+.. .+.+       .++++.+. ++..  ...-.+|.+.-. .......++...    
T Consensus       261 hly~~~~~~~~~~~lT~G~~~V~~-i~~~-------d~~~~~iyf~a~~~~p~~r~lY~v~~~-~~~~~~~LT~~~----  327 (353)
T PF00930_consen  261 HLYLYDLDGGKPRQLTSGDWEVTS-ILGW-------DEDNNRIYFTANGDNPGERHLYRVSLD-SGGEPKCLTCED----  327 (353)
T ss_dssp             EEEEEETTSSEEEESS-SSS-EEE-EEEE-------ECTSSEEEEEESSGGTTSBEEEEEETT-ETTEEEESSTTS----
T ss_pred             EEEEEcccccceeccccCceeecc-cceE-------cCCCCEEEEEecCCCCCceEEEEEEeC-CCCCeEeccCCC----
Confidence            666554433334445444444321 2333       55555553 3333  235566666543 122333333222    


Q ss_pred             cceeEEEEccCCceeeeccc
Q 001415          720 TKISRLIFTNSGNAILALAS  739 (1082)
Q Consensus       720 ~~i~~~~~s~~~~~l~~~~~  739 (1082)
                      .....+.|||++++++....
T Consensus       328 ~~~~~~~~Spdg~y~v~~~s  347 (353)
T PF00930_consen  328 GDHYSASFSPDGKYYVDTYS  347 (353)
T ss_dssp             STTEEEEE-TTSSEEEEEEE
T ss_pred             CCceEEEECCCCCEEEEEEc
Confidence            11168999999998776544

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=98.17  E-value=0.0002  Score=79.47  Aligned_cols=199  Identities=12%  Similarity=0.096  Sum_probs=115.4

Q ss_pred             cCeEEEcCCCCEEEEEECCCcEEEEEecCCccceeecccccccccccccccCCCCccccCCCCceeeeccCCceeEEEec
Q 001415          621 SPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKNGDVRSLADVKPRITEESNDKSKVWKLT  700 (1082)
Q Consensus       621 i~~~~~s~dg~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~iw~~~  700 (1082)
                      +.--+++..+++++.|+.-|.+++|+...+........+                                         
T Consensus        36 v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~-----------------------------------------   74 (726)
T KOG3621|consen   36 VKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEG-----------------------------------------   74 (726)
T ss_pred             EEEEEeecCCceEEEecccceEEEEecCchhhhcccccC-----------------------------------------
Confidence            334456677889999999999999987666322211111                                         


Q ss_pred             ccCCCCccccccccCcccccceeEEEEccCCceeeecccCCeEEEeeccccccCCCCCcccccCccccCCCCcceeeccc
Q 001415          701 ELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDV  780 (1082)
Q Consensus       701 ~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  780 (1082)
                                       ....+....++++..++++++..|.|.++.+.. ...++..                ...  .
T Consensus        75 -----------------~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~-~~p~~~~----------------~~t--~  118 (726)
T KOG3621|consen   75 -----------------ATGITCVRSVSSVEYLVAAGTASGRVSVFQLNK-ELPRDLD----------------YVT--P  118 (726)
T ss_pred             -----------------ccceEEEEEecchhHhhhhhcCCceEEeehhhc-cCCCcce----------------eec--c
Confidence                             223445567777888788888888888876653 1111110                111  1


Q ss_pred             CCCCCCCCccEEEeecCCCeEEEeeC-CeEEEEecCCC----eeEEEECCCCCCeeEEEEecCCCcEEEEEeCCCcEEEE
Q 001415          781 TDSNPEEAVPCFALSKNDSYVMSASG-GKISLFNMMTF----KTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIY  855 (1082)
Q Consensus       781 ~~~~~~~~i~~l~~s~dg~~l~~~sd-g~i~iwd~~~~----~~~~~~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iw  855 (1082)
                      ....|...|++++|++|+..+.+|.+ |+|..-.+.+.    -..+.+......|..+.+..  +.+|++...-  -.++
T Consensus       119 ~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~q--~~LLVStl~r--~~Lc  194 (726)
T KOG3621|consen  119 CDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYLQ--SYLLVSTLTR--CILC  194 (726)
T ss_pred             ccccCCceEEEEEecccccEEeecCCCceEEEEEechhhhhccccceeeccCcceEEeeccc--ceehHhhhhh--hhee
Confidence            11227889999999999999999985 99888877761    11233334556777777763  4555544332  3344


Q ss_pred             ecccceeeeeecc-ccc-CEEEEEEeCC----CCEEEEEeCCCcEEEEEcCC
Q 001415          856 NVRVDEVKSKLKG-HSK-RITGLAFSHA----LNVLVSSGADSQLCVWSSDG  901 (1082)
Q Consensus       856 d~~~~~~~~~l~~-h~~-~V~~l~~s~d----~~~l~s~s~Dg~i~vwd~~~  901 (1082)
                      +.+.+...+.=+. -.+ .-...+|-|.    .+-.+.++.-| .|+|..+-
T Consensus       195 ~tE~eti~QIG~k~R~~~~~~GACF~~g~~~~q~~~IycaRPG-~RlWead~  245 (726)
T KOG3621|consen  195 QTEAETITQIGKKPRKSLIDFGACFFPGQCKAQKPQIYCARPG-LRLWEADF  245 (726)
T ss_pred             ecchhHHHHhcCCCcCCccccceEEeeccccCCCceEEEecCC-CceEEeec
Confidence            4443321111110 111 1233455543    34455566666 68997664

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.16  E-value=6e-05  Score=84.47  Aligned_cols=189  Identities=15%  Similarity=0.151  Sum_probs=130.3

Q ss_pred             CCeeEEEEecCCCcEEEEEeCCCcEEEEecccceeeeeecccccCEEEEEEeCCCCEEEEEeCCCcEEEEEcCCcccccc
Q 001415          828 PAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKN  907 (1082)
Q Consensus       828 ~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~  907 (1082)
                      ..+.|++++   +++++.|+.+|.|++++.... . .....|+..      ..+|.+++||+.||+|.|-.+.+.+....
T Consensus        40 D~is~~av~---~~~~~~GtH~g~v~~~~~~~~-~-~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~~  108 (846)
T KOG2066|consen   40 DAISCCAVH---DKFFALGTHRGAVYLTTCQGN-P-KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEITQ  108 (846)
T ss_pred             hHHHHHHhh---cceeeeccccceEEEEecCCc-c-ccccccccc------ccCCceEEEecCCCcEEEeeccCCcccee
Confidence            346777775   479999999999999997643 3 444446554      56899999999999999999888543221


Q ss_pred             eeeeccCCCCCCCCCCcEEEEcCC-----CcEEEEEecCeEEEEEccCcceeeeeccCCCCcceeEEEEcCCCceEEEee
Q 001415          908 RFLQIPTGRTPTAQSDTRVQFHQD-----QIHFLVVHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACF  982 (1082)
Q Consensus       908 ~~~~~~~~~~~~~~~v~~~~fspd-----g~~l~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~dg~~l~t~s  982 (1082)
                      .-..         ..+.+++++||     .+.++++....+.++.-.-.........+.-.++|.++.|  .|.++|-++
T Consensus       109 ~df~---------rpiksial~Pd~~~~~sk~fv~GG~aglvL~er~wlgnk~~v~l~~~eG~I~~i~W--~g~lIAWan  177 (846)
T KOG2066|consen  109 YDFK---------RPIKSIALHPDFSRQQSKQFVSGGMAGLVLSERNWLGNKDSVVLSEGEGPIHSIKW--RGNLIAWAN  177 (846)
T ss_pred             EecC---------CcceeEEeccchhhhhhhheeecCcceEEEehhhhhcCccceeeecCccceEEEEe--cCcEEEEec
Confidence            1111         45789999998     5667775444477776443322222222234789999999  578888887


Q ss_pred             cCCcEEEEecCCceeeeeeCCCeecCCCCCCCCceeeEEEEeCCCCCeEEEEecCCcEEEEccC
Q 001415          983 LDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPL 1046 (1082)
Q Consensus       983 ~dg~v~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~~~~~~~d~~~l~s~~~dg~v~vW~~~ 1046 (1082)
                      ++ -|+|||..+++.+..+.++.-.+.-    ...+-.+.|.+  ...|+.| ...+|++..+.
T Consensus       178 d~-Gv~vyd~~~~~~l~~i~~p~~~~R~----e~fpphl~W~~--~~~LVIG-W~d~v~i~~I~  233 (846)
T KOG2066|consen  178 DD-GVKVYDTPTRQRLTNIPPPSQSVRP----ELFPPHLHWQD--EDRLVIG-WGDSVKICSIK  233 (846)
T ss_pred             CC-CcEEEeccccceeeccCCCCCCCCc----ccCCCceEecC--CCeEEEe-cCCeEEEEEEe
Confidence            55 5799999999999988855533321    24455688887  3456554 56678888887

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=98.15  E-value=0.00085  Score=69.82  Aligned_cols=247  Identities=8%  Similarity=0.095  Sum_probs=137.7

Q ss_pred             CCCeEEEEECCCcceEEEEecCCC-----CCCcCeEEEcCCCCEEEEEEC--CCcEEEEEecCCccceeecccccccccc
Q 001415          594 DDFSIKFWDMDSVQLLTSIDADGG-----LPASPRIRFNKDGCLLAVSTN--DNGIKILATSDGIRLLRTFENLAYDASR  666 (1082)
Q Consensus       594 ~dg~i~iwd~~~~~~~~~~~~~~~-----~~~i~~~~~s~dg~~l~~~~~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~  666 (1082)
                      ..-.|.+||..+-.....+.....     ......++++.||+++++...  ..+|.|.|+... +....+.......  
T Consensus        65 RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~-kvv~ei~~PGC~~--  141 (342)
T PF06433_consen   65 RTDVVEIWDTQTLSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFTPATSVTVVDLAAK-KVVGEIDTPGCWL--  141 (342)
T ss_dssp             EEEEEEEEETTTTEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEESSSEEEEEEETTTT-EEEEEEEGTSEEE--
T ss_pred             ceeEEEEEecCcCcccceEecCCcchheecccccceEEccCCcEEEEEccCCCCeEEEEECCCC-ceeeeecCCCEEE--
Confidence            345699999999988877655432     123456888999999887643  456888888766 4444443222111  


Q ss_pred             cccccCCCCccccCCCCceeeeccCCceeEEEecccCCCCccccccccCcccccceeEEEEccCCceeeecccCCeEEEe
Q 001415          667 TSENSKNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLW  746 (1082)
Q Consensus       667 ~~~~~~~~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iw  746 (1082)
                         .+       ......+.+-+.||.+....+....+......--+ ..........-++...+..++..+-+|.++--
T Consensus       142 ---iy-------P~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F-~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~  210 (342)
T PF06433_consen  142 ---IY-------PSGNRGFSMLCGDGSLLTVTLDADGKEAQKSTKVF-DPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSA  210 (342)
T ss_dssp             ---EE-------EEETTEEEEEETTSCEEEEEETSTSSEEEEEEEES-STTTS-B-S--EEETTTTEEEEEBTTSEEEEE
T ss_pred             ---EE-------ecCCCceEEEecCCceEEEEECCCCCEeEeecccc-CCCCcccccccceECCCCeEEEEecCCEEEEE
Confidence               11       11224577888889888888875433321111111 10011222334455555556667777877776


Q ss_pred             eccccccCCCCCcccccCccccCCCCcceeecccCCCCCCCCccEEEeecCCCeEEEe-e--------C--CeEEEEecC
Q 001415          747 KWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSA-S--------G--GKISLFNMM  815 (1082)
Q Consensus       747 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~l~~~-s--------d--g~i~iwd~~  815 (1082)
                      ++.......         ..-|...+........    ..+.-.-+++++....|.+. .        +  ..|.++|+.
T Consensus       211 dlsg~~~~~---------~~~~~~~t~~e~~~~W----rPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~  277 (342)
T PF06433_consen  211 DLSGDSAKF---------GKPWSLLTDAEKADGW----RPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLK  277 (342)
T ss_dssp             EETTSSEEE---------EEEEESS-HHHHHTTE----EE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETT
T ss_pred             eccCCcccc---------cCcccccCccccccCc----CCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECC
Confidence            665432111         1122222211111001    11233457777655544433 1        1  138999999


Q ss_pred             CCeeEEEECCCCCCeeEEEEecCCCcEEEEEe-CCCcEEEEecccceeeeeecc
Q 001415          816 TFKTMATFMPPPPAATFLAFHPQDNNIIAIGM-DDSSIQIYNVRVDEVKSKLKG  868 (1082)
Q Consensus       816 ~~~~~~~~~~~~~~v~~l~~sp~~~~~lasg~-~dg~v~iwd~~~~~~~~~l~~  868 (1082)
                      +++.+.++.. ...+.+++.+.++..+|++.+ .++.+.+||..+|+.+.++..
T Consensus       278 t~krv~Ri~l-~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~~  330 (342)
T PF06433_consen  278 THKRVARIPL-EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIEQ  330 (342)
T ss_dssp             TTEEEEEEEE-EEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE--
T ss_pred             CCeEEEEEeC-CCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehhc
Confidence            9999998873 345789999996666776544 578999999999999988874

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=98.12  E-value=0.0008  Score=74.01  Aligned_cols=268  Identities=14%  Similarity=0.193  Sum_probs=138.9

Q ss_pred             CceEEEEecCCCeEEEEEcCCCcEEEEEccccceee------ee------------ceeeeccCCCCcc------ccccc
Q 001415          360 SPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLV------LR------------NFKVWDLGACSMP------LQAAL  415 (1082)
Q Consensus       360 ~v~~~~~spdg~~llasgs~dg~i~iwd~~~~~~~~------~~------------~~~~~d~~~~~~~------~~~~~  415 (1082)
                      .|+++.|+++... ||+|...|.|.||.+...+.-.      ..            .-++.|+.....+      .+..+
T Consensus         3 ~v~~vs~a~~t~E-lav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l   81 (395)
T PF08596_consen    3 SVTHVSFAPETLE-LAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTL   81 (395)
T ss_dssp             -EEEEEEETTTTE-EEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEE
T ss_pred             eEEEEEecCCCce-EEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhh
Confidence            5889999999775 8899999999999986654332      00            1122333221111      12224


Q ss_pred             ccCCCCceeEEEEecCCCeEEEEeCCCeEEEEEccCCceeeEEEEeec------cccCeeEEEecC-----CC-CceEEE
Q 001415          416 VKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDA------HVGGVNDIAFSH-----PN-KQLCVI  483 (1082)
Q Consensus       416 ~~~h~~~V~~l~~spdg~~las~~~d~~v~iwd~~~~~~~~~~~~~~~------h~~~V~~l~fs~-----dg-~~~~l~  483 (1082)
                      +....++|++++.| |=.++|+|..+|.+.|.|+.....+.. ..+..      ....|+++.|+-     |+ ..++++
T Consensus        82 ~~~~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~-~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~  159 (395)
T PF08596_consen   82 LDAKQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYN-ENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLL  159 (395)
T ss_dssp             E---S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEE-EEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEE
T ss_pred             eeccCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEee-ccccccccccccccCeeEEEEEEEecCCCcccceEEE
Confidence            55668999999998 556999999999999999977665543 22332      234688888862     22 125788


Q ss_pred             EEeCCCcEEEEEcc-C--Ccee----EEeecCCcCeEEEeeeecCCc-------------------eEEEEecCCCcEEE
Q 001415          484 TCGDDKTIKVWDAT-N--GAKQ----YIFEGHEAPVYSVCPHHKENI-------------------QFIFSTALDGKIKA  537 (1082)
Q Consensus       484 s~s~d~~i~vwd~~-~--~~~~----~~~~~h~~~v~~~~~~~~~~~-------------------~~l~s~~~dg~i~i  537 (1082)
                      .|...|.+.+|.+. .  +...    .....+.++|..+......+|                   .-++....+..+++
T Consensus       160 vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv  239 (395)
T PF08596_consen  160 VGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIRV  239 (395)
T ss_dssp             EEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEE
T ss_pred             EEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEE
Confidence            89999999999875 1  2211    122246677766653211111                   12333444677888


Q ss_pred             EecCCCCceeeecCCCCceEEEEEccCCCeeeecccccceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEEecCCC
Q 001415          538 WLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGG  617 (1082)
Q Consensus       538 wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~  617 (1082)
                      +...+.+...........+..+.+-+-.               . ...+..|++-..+|.|+++.+..-+.+........
T Consensus       240 ~~~~~~k~~~K~~~~~~~~~~~~vv~~~---------------~-~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~  303 (395)
T PF08596_consen  240 FKPPKSKGAHKSFDDPFLCSSASVVPTI---------------S-RNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPP  303 (395)
T ss_dssp             E-TT---EEEEE-SS-EEEEEEEEEEEE-----------------EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS-
T ss_pred             EeCCCCcccceeeccccccceEEEEeec---------------c-cCCceEEEEEECCCcEEEEECCCchHhhcccCCCc
Confidence            8776655443333111122222221000               0 11223577788999999999999888887765421


Q ss_pred             --CCCcCeEEEcCCCCEEEEEECCCcEEEEEe
Q 001415          618 --LPASPRIRFNKDGCLLAVSTNDNGIKILAT  647 (1082)
Q Consensus       618 --~~~i~~~~~s~dg~~l~~~~~dg~i~iwd~  647 (1082)
                        ...+....++++|..++..+. ..+.++.+
T Consensus       304 ~d~~~~~~ssis~~Gdi~~~~gp-sE~~l~sv  334 (395)
T PF08596_consen  304 LDSRRLSSSSISRNGDIFYWTGP-SEIQLFSV  334 (395)
T ss_dssp             --HHHHTT-EE-TTS-EEEE-SS-SEEEEEEE
T ss_pred             cccccccccEECCCCCEEEEeCc-ccEEEEEE
Confidence              123556788888887665543 34444443

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=98.12  E-value=0.00088  Score=74.11  Aligned_cols=295  Identities=14%  Similarity=0.135  Sum_probs=149.9

Q ss_pred             CCeEEEEECCCcceEEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEecCCccceeeccccccccccccc-----
Q 001415          595 DFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSE-----  669 (1082)
Q Consensus       595 dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~-----  669 (1082)
                      .+.+.+||+.+++.......   ...+....|+|+|+.++... ++.|.+++..++.....+..+ ...+.....     
T Consensus        22 ~~~y~i~d~~~~~~~~l~~~---~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~lT~dg-~~~i~nG~~dwvye   96 (353)
T PF00930_consen   22 KGDYYIYDIETGEITPLTPP---PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQLTTDG-EPGIYNGVPDWVYE   96 (353)
T ss_dssp             EEEEEEEETTTTEEEESS-E---ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEESES---TTTEEESB--HHHH
T ss_pred             ceeEEEEecCCCceEECcCC---ccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEecccc-ceeEEcCccceecc
Confidence            46789999999766554433   23578899999999999876 478999988776333333333 111110000     


Q ss_pred             -c-cC-CCCccccCCCCceeeeccC-CceeEEEecccCCCCccccccccCcccccceeEEEEccCCceeeecccCCeEEE
Q 001415          670 -N-SK-NGDVRSLADVKPRITEESN-DKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLL  745 (1082)
Q Consensus       670 -~-~~-~~~~~~s~~~~~l~~~~~d-~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~i  745 (1082)
                       . |. ...+..+||++.++....| ..++.+.+........          ....+..+.+-.      +|..+..+.+
T Consensus        97 EEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~----------~yp~~~~~~YPk------~G~~np~v~l  160 (353)
T PF00930_consen   97 EEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDS----------QYPEVESIRYPK------AGDPNPRVSL  160 (353)
T ss_dssp             HHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTE----------SS-EEEEEE--B------TTS---EEEE
T ss_pred             ccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccc----------cCCcccccccCC------CCCcCCceEE
Confidence             0 11 2334469999999876654 4666666554322211          001122233221      2222233333


Q ss_pred             eeccccccCCCCCcccccCccccCCCCcceeecccC--CCCCCCCccEEEeecCCCeEEEe-e--C-C--eEEEEecCCC
Q 001415          746 WKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVT--DSNPEEAVPCFALSKNDSYVMSA-S--G-G--KISLFNMMTF  817 (1082)
Q Consensus       746 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~~l~~s~dg~~l~~~-s--d-g--~i~iwd~~~~  817 (1082)
                      |                    +++..+++.......  .......+..+.|+++++.++.. .  + .  .+.+.|..++
T Consensus       161 ~--------------------v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg  220 (353)
T PF00930_consen  161 F--------------------VVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTG  220 (353)
T ss_dssp             E--------------------EEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTT
T ss_pred             E--------------------EEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCC
Confidence            2                    223333332211111  01135667889999999944433 2  2 2  3777788776


Q ss_pred             eeEEEECCC-CC---CeeEEEEe-cCCCcEEEEEeCCCcEEEE--ecccceeeeeecccccCEEE-EEEeCCCCEEE-EE
Q 001415          818 KTMATFMPP-PP---AATFLAFH-PQDNNIIAIGMDDSSIQIY--NVRVDEVKSKLKGHSKRITG-LAFSHALNVLV-SS  888 (1082)
Q Consensus       818 ~~~~~~~~~-~~---~v~~l~~s-p~~~~~lasg~~dg~v~iw--d~~~~~~~~~l~~h~~~V~~-l~~s~d~~~l~-s~  888 (1082)
                      .+....... ..   ......|. +++..+|.....||--+||  +..++. ...+....-.|+. +.++++++.|. ++
T Consensus       221 ~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~-~~~lT~G~~~V~~i~~~d~~~~~iyf~a  299 (353)
T PF00930_consen  221 ETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGK-PRQLTSGDWEVTSILGWDEDNNRIYFTA  299 (353)
T ss_dssp             TCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSE-EEESS-SSS-EEEEEEEECTSSEEEEEE
T ss_pred             ceeEEEEecCCcceeeecccccccCCCCEEEEEEEcCCCcEEEEEcccccc-eeccccCceeecccceEcCCCCEEEEEe
Confidence            554333221 12   23456665 6567777777788855555  555454 3456555666755 67888877665 44


Q ss_pred             eCC--CcEEEEEcCCcccccceeeeccCCCCCCCCCCcEEEEcCCCcEEEE
Q 001415          889 GAD--SQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV  937 (1082)
Q Consensus       889 s~D--g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~  937 (1082)
                      ..+  ..-.+|.+........+++....+.      ...+.|||+|++++.
T Consensus       300 ~~~~p~~r~lY~v~~~~~~~~~~LT~~~~~------~~~~~~Spdg~y~v~  344 (353)
T PF00930_consen  300 NGDNPGERHLYRVSLDSGGEPKCLTCEDGD------HYSASFSPDGKYYVD  344 (353)
T ss_dssp             SSGGTTSBEEEEEETTETTEEEESSTTSST------TEEEEE-TTSSEEEE
T ss_pred             cCCCCCceEEEEEEeCCCCCeEeccCCCCC------ceEEEECCCCCEEEE
Confidence            442  3445554443201111222222211      158999999999887

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>PF08513 LisH: LisH; InterPro: IPR013720 The LisH motif is found in a large number of eukaryotic proteins, from metazoa, fungi and plants that have a wide range of functions

Probab=98.11  E-value=4.5e-06  Score=51.06  Aligned_cols=27  Identities=37%  Similarity=0.551  Sum_probs=24.8

Q ss_pred             HHHHHHHHHHHhhcChHHHHHHHHHhc
Q 001415            6 RELVFLILQFLDEEKFKETVHKLEQES   32 (1082)
Q Consensus         6 ~~~~~li~q~L~~~g~~~s~~~L~~Es   32 (1082)
                      +++.+||++||.++||.+||++|.+||
T Consensus         1 ~~Ln~lI~~YL~~~Gy~~tA~~f~~Ea   27 (27)
T PF08513_consen    1 EELNQLIYDYLVENGYKETAKAFAKEA   27 (27)
T ss_dssp             HHHHHHHHHHHHHCT-HHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHHCCcHHHHHHHHhcC
Confidence            589999999999999999999999996

The recently solved structure of the LisH domain in the N-terminal region of LIS1 depicted it as a novel dimerization motif, and that other structural elements are likely to play an important role in dimerisation [, , ]. The LisH (lis homology) domain mediates protein dimerisation and tetramerisation. The LisH domain is found in Sif2, a component of the Set3 complex which is responsible for repressing meiotic genes. It has been shown that the LisH domain helps mediate interaction with components of the Set3 complex []. ; PDB: 2XTE_L 2XTC_B 2XTD_A 1UUJ_B.

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.09  E-value=0.00047  Score=78.20  Aligned_cols=216  Identities=13%  Similarity=0.163  Sum_probs=136.6

Q ss_pred             EEEcCCCCEEEEEECCCcEEEEEecCCccceeecccccccccccccccCCCCccccCCC-CceeeeccCC-----ceeEE
Q 001415          624 IRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKNGDVRSLADV-KPRITEESND-----KSKVW  697 (1082)
Q Consensus       624 ~~~s~dg~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~-~~l~~~~~d~-----~i~iw  697 (1082)
                      -+|++.+..++.|+.+|.|.+++.  ..+..+.+..+...... .+.        ..++ ..|++.+.|+     .+++|
T Consensus        29 sc~~s~~~~vvigt~~G~V~~Ln~--s~~~~~~fqa~~~siv~-~L~--------~~~~~~~L~sv~Ed~~~np~llkiw   97 (933)
T KOG2114|consen   29 SCCSSSTGSVVIGTADGRVVILNS--SFQLIRGFQAYEQSIVQ-FLY--------ILNKQNFLFSVGEDEQGNPVLLKIW   97 (933)
T ss_pred             eEEcCCCceEEEeeccccEEEecc--cceeeehheecchhhhh-Hhh--------cccCceEEEEEeecCCCCceEEEEe
Confidence            457888899999999999888763  32333445444443110 111        2233 4566655554     58999


Q ss_pred             EecccCCCC---cc---ccccccCcccccceeEEEEccCCceeeecccCCeEEEeeccccccCCCCCcccccCccccCCC
Q 001415          698 KLTELSEPN---QC---RSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPP  771 (1082)
Q Consensus       698 ~~~~~~~~~---~~---~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~  771 (1082)
                      +++......   ..   +....+......++..++++.+-+.+++|-.+|.|..+.-+         .....       .
T Consensus        98 ~lek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GD---------i~RDr-------g  161 (933)
T KOG2114|consen   98 DLEKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGD---------ILRDR-------G  161 (933)
T ss_pred             cccccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCc---------chhcc-------c
Confidence            998764333   11   22222222356788999999999999999999999887422         11111       1


Q ss_pred             CcceeecccCCCCCCCCccEEEeecCCCe-EEEeeCCeEEEEecCCCee-EEEECCCCCCeeEEEEecCCCcEEEEEeCC
Q 001415          772 SGIMMTNDVTDSNPEEAVPCFALSKNDSY-VMSASGGKISLFNMMTFKT-MATFMPPPPAATFLAFHPQDNNIIAIGMDD  849 (1082)
Q Consensus       772 ~~~~~~~~~~~~~~~~~i~~l~~s~dg~~-l~~~sdg~i~iwd~~~~~~-~~~~~~~~~~v~~l~~sp~~~~~lasg~~d  849 (1082)
                      +  .....   .....+|+.+++..+++. +.++....|.+|.+....+ ...+..+.....|.++++ ....+++++ +
T Consensus       162 s--r~~~~---~~~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~-~t~qfIca~-~  234 (933)
T KOG2114|consen  162 S--RQDYS---HRGKEPITGLALRSDGKSVLFVATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSD-GTYQFICAG-S  234 (933)
T ss_pred             c--ceeee---ccCCCCceeeEEecCCceeEEEEecceeEEEEecCCCcceeeeccCCccceeeecCC-CCccEEEec-C
Confidence            1  11111   125788999999999987 4555678899999985442 455778888999999998 444344443 3


Q ss_pred             CcEEEEecccceeeeeec-ccccCE
Q 001415          850 SSIQIYNVRVDEVKSKLK-GHSKRI  873 (1082)
Q Consensus       850 g~v~iwd~~~~~~~~~l~-~h~~~V  873 (1082)
                      ..+.+|+......-..+. ||....
T Consensus       235 e~l~fY~sd~~~~cfaf~~g~kk~~  259 (933)
T KOG2114|consen  235 EFLYFYDSDGRGPCFAFEVGEKKEM  259 (933)
T ss_pred             ceEEEEcCCCcceeeeecCCCeEEE
Confidence            469999987555444554 555443

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.07  E-value=0.00026  Score=80.21  Aligned_cols=203  Identities=14%  Similarity=0.152  Sum_probs=128.2

Q ss_pred             EEEecCCCcEEEEEeCCCcEEEEecccceeeeeecccccC-EEEEEEeCCCCEEEEEeCCCc-----EEEEEcCCccccc
Q 001415          833 LAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKR-ITGLAFSHALNVLVSSGADSQ-----LCVWSSDGWEKQK  906 (1082)
Q Consensus       833 l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~-V~~l~~s~d~~~l~s~s~Dg~-----i~vwd~~~~~~~~  906 (1082)
                      -+|++ ++..+|.|+.+|.|.+.+ .+-+.+..++++... |+.+-...+..+|++.+.|+.     |+||+++..+...
T Consensus        29 sc~~s-~~~~vvigt~~G~V~~Ln-~s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~  106 (933)
T KOG2114|consen   29 SCCSS-STGSVVIGTADGRVVILN-SSFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNN  106 (933)
T ss_pred             eEEcC-CCceEEEeeccccEEEec-ccceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCC
Confidence            34666 777999999999998887 334555778888777 555555555578999887754     8999998764433


Q ss_pred             -ceee---eccCCCCC-CCCCCcEEEEcCCCcEEEEE-ecCeEEEEEccC--cceeeeeccCCCCcceeEEEEcCCCceE
Q 001415          907 -NRFL---QIPTGRTP-TAQSDTRVQFHQDQIHFLVV-HETQLAIFETTK--LECVKQWVPRESSAPITHATFSCDSQLV  978 (1082)
Q Consensus       907 -~~~~---~~~~~~~~-~~~~v~~~~fspdg~~l~~~-~d~~i~iwd~~~--~~~~~~~~~~~h~~~i~~l~~s~dg~~l  978 (1082)
                       ..++   +......+ ...++..++.|.+-+.+|+| .+|.|..+.-+-  .+-.+.-..+....+|+.+++-.|++.+
T Consensus       107 sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~  186 (933)
T KOG2114|consen  107 SPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSV  186 (933)
T ss_pred             CcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCcee
Confidence             2333   22221111 23567899999999999997 678888875321  1111222222337899999999999984


Q ss_pred             EEeecCCcEEEEecCCcee-eeeeCCCeecCCCCCCCCceeeEEEEeCCCCCeEEEEecCCcEEEEccCCCC
Q 001415          979 YACFLDATVCVFSAANLKL-RCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESE 1049 (1082)
Q Consensus       979 ~t~s~dg~v~vwd~~~~~~-~~~~~~~~~~~~gh~~~~v~~~~~~~~~~d~~~l~s~~~dg~v~vW~~~~~~ 1049 (1082)
                      +.+..-..|.+|.+..... .+.+.        +.+  +..-+.+|++.-+ .+++++ +..|.+++...-.
T Consensus       187 lFv~Tt~~V~~y~l~gr~p~~~~ld--------~~G--~~lnCss~~~~t~-qfIca~-~e~l~fY~sd~~~  246 (933)
T KOG2114|consen  187 LFVATTEQVMLYSLSGRTPSLKVLD--------NNG--ISLNCSSFSDGTY-QFICAG-SEFLYFYDSDGRG  246 (933)
T ss_pred             EEEEecceeEEEEecCCCcceeeec--------cCC--ccceeeecCCCCc-cEEEec-CceEEEEcCCCcc
Confidence            4444567899999984432 22222        112  3333666775322 244443 5667888776544

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=98.05  E-value=0.0043  Score=71.82  Aligned_cols=210  Identities=12%  Similarity=0.086  Sum_probs=111.5

Q ss_pred             CCeEEEEeCCCeEEEEEccCCceeeEEEEeec---cccCee--EEEecCCCCceEEEEEeCCCcEEEEEccCCceeEEee
Q 001415          432 GSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDA---HVGGVN--DIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFE  506 (1082)
Q Consensus       432 g~~las~~~d~~v~iwd~~~~~~~~~~~~~~~---h~~~V~--~l~fs~dg~~~~l~s~s~d~~i~vwd~~~~~~~~~~~  506 (1082)
                      +..+.+++.++.|.-.|..+|+.+-....-..   +...+.  .++.. ++.  .++.++.++.|.-+|.++|+.+..+.
T Consensus        61 ~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~-~~~--~V~v~~~~g~v~AlD~~TG~~~W~~~  137 (488)
T cd00216          61 DGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYW-DPR--KVFFGTFDGRLVALDAETGKQVWKFG  137 (488)
T ss_pred             CCEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEc-cCC--eEEEecCCCeEEEEECCCCCEeeeec
Confidence            44566677788999999999886653211000   000110  11111 214  47778889999999999999998775


Q ss_pred             cCCcC-----eE-EEeeeecCCceEEEEec---------CCCcEEEEecCCCCceeeecCCCCceEEE-EEccCCCeeee
Q 001415          507 GHEAP-----VY-SVCPHHKENIQFIFSTA---------LDGKIKAWLYDNLGSRVDYEAPGRWCTTM-AYSADGTRTYQ  570 (1082)
Q Consensus       507 ~h~~~-----v~-~~~~~~~~~~~~l~s~~---------~dg~i~iwd~~~~~~~~~~~~~~~~v~~~-~~s~d~~~~~~  570 (1082)
                      .....     +. +..+.  .  ..++.++         .++.+...|..+++....+.......... .+.+.. ... 
T Consensus       138 ~~~~~~~~~~i~ssP~v~--~--~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~-~~~-  211 (488)
T cd00216         138 NNDQVPPGYTMTGAPTIV--K--KLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDR-QMW-  211 (488)
T ss_pred             CCCCcCcceEecCCCEEE--C--CEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCc-cee-
Confidence            43221     11 11111  1  2455553         36788899999888877665432111000 000000 000 


Q ss_pred             ccccc-ceeEEEecCCCCEEEEEeCCC------------------eEEEEECCCcceEEEEecCCCCC----CcCeEEEc
Q 001415          571 GFRKR-SLGVVQFDTTKNRFLAAGDDF------------------SIKFWDMDSVQLLTSIDADGGLP----ASPRIRFN  627 (1082)
Q Consensus       571 ~~~~~-~i~~~~~~~~~~~l~~~~~dg------------------~i~iwd~~~~~~~~~~~~~~~~~----~i~~~~~s  627 (1082)
                      +.... .....++++.+..++.++.++                  .|.-+|..+|+....++...+..    ......+.
T Consensus       212 ~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~  291 (488)
T cd00216         212 GPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLA  291 (488)
T ss_pred             cCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEE
Confidence            00011 112345555556677776554                  68888999998887765322100    00001111


Q ss_pred             ----CCCC---EEEEEECCCcEEEEEecCC
Q 001415          628 ----KDGC---LLAVSTNDNGIKILATSDG  650 (1082)
Q Consensus       628 ----~dg~---~l~~~~~dg~i~iwd~~~~  650 (1082)
                          -+|.   .+++++.+|.+..+|..++
T Consensus       292 ~~~~~~g~~~~~V~~g~~~G~l~ald~~tG  321 (488)
T cd00216         292 DIKPKDGKPVPAIVHAPKNGFFYVLDRTTG  321 (488)
T ss_pred             eccccCCCeeEEEEEECCCceEEEEECCCC
Confidence                1232   5666777777777777777

The alignment model contains an 8-bladed beta-propeller.

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.03  E-value=7.2e-05  Score=81.78  Aligned_cols=83  Identities=18%  Similarity=0.322  Sum_probs=68.9

Q ss_pred             CcceeeecCCCCCceEEEEecCCCeEEEEEcCCCcEEEEEccccceeeeeceeeeccCCCCcccccccccCCCCceeEEE
Q 001415          348 PKTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVI  427 (1082)
Q Consensus       348 ~~~~~~~~~h~~~v~~~~~spdg~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~  427 (1082)
                      .+.....+...+.|.|++++|+.++ ++.|..||+|++||...+.....                     .+.-..+.++
T Consensus       249 qrvsvtsipL~s~v~~ca~sp~E~k-LvlGC~DgSiiLyD~~~~~t~~~---------------------ka~~~P~~ia  306 (545)
T PF11768_consen  249 QRVSVTSIPLPSQVICCARSPSEDK-LVLGCEDGSIILYDTTRGVTLLA---------------------KAEFIPTLIA  306 (545)
T ss_pred             eEEEEEEEecCCcceEEecCcccce-EEEEecCCeEEEEEcCCCeeeee---------------------eecccceEEE
Confidence            3334566679999999999999996 89999999999999987644431                     2334688999


Q ss_pred             EecCCCeEEEEeCCCeEEEEEccCC
Q 001415          428 WSPDGSLFGVAYSRHIVQIYSYHGG  452 (1082)
Q Consensus       428 ~spdg~~las~~~d~~v~iwd~~~~  452 (1082)
                      |+|+|..+++|+..|.+.+||+.-.
T Consensus       307 WHp~gai~~V~s~qGelQ~FD~ALs  331 (545)
T PF11768_consen  307 WHPDGAIFVVGSEQGELQCFDMALS  331 (545)
T ss_pred             EcCCCcEEEEEcCCceEEEEEeecC
Confidence            9999999999999999999998754

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=98.01  E-value=0.0074  Score=64.30  Aligned_cols=287  Identities=15%  Similarity=0.108  Sum_probs=130.1

Q ss_pred             EEEecCCCeEEEEEcCCCc--EEEEEccccceeeeeceeeeccCCCCcccccccccCCC-CceeEEEEecCCCeEEEEeC
Q 001415          364 MDFHPVQQTLLLVGTNVGD--IGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPG-VSVNRVIWSPDGSLFGVAYS  440 (1082)
Q Consensus       364 ~~~spdg~~llasgs~dg~--i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~-~~V~~l~~spdg~~las~~~  440 (1082)
                      =+|.+||++||+++..||.  +.+-|+++++..+                    |.... .......++|+++.++....
T Consensus        41 ~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~Q--------------------LTdg~g~~~~g~~~s~~~~~~~Yv~~  100 (386)
T PF14583_consen   41 NCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQ--------------------LTDGPGDNTFGGFLSPDDRALYYVKN  100 (386)
T ss_dssp             --B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE-----------------------SS-B-TTT-EE-TTSSEEEEEET
T ss_pred             CCcCCCCCEEEEEeccCCCcceEEEEcccCEEEE--------------------CccCCCCCccceEEecCCCeEEEEEC
Confidence            3689999999998888765  6666888887765                    22222 22335678899999887766


Q ss_pred             CCeEEEEEccCCceeeEEEEeeccccCeeEEEec--CCCCceEEEEEe----------------------CCCcEEEEEc
Q 001415          441 RHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFS--HPNKQLCVITCG----------------------DDKTIKVWDA  496 (1082)
Q Consensus       441 d~~v~iwd~~~~~~~~~~~~~~~h~~~V~~l~fs--~dg~~~~l~s~s----------------------~d~~i~vwd~  496 (1082)
                      +..|+-.|+.+.+...   .+.-..+.+-...|.  .|+.  .++..-                      ..+.|.--|+
T Consensus       101 ~~~l~~vdL~T~e~~~---vy~~p~~~~g~gt~v~n~d~t--~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl  175 (386)
T PF14583_consen  101 GRSLRRVDLDTLEERV---VYEVPDDWKGYGTWVANSDCT--KLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDL  175 (386)
T ss_dssp             TTEEEEEETTT--EEE---EEE--TTEEEEEEEEE-TTSS--EEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEET
T ss_pred             CCeEEEEECCcCcEEE---EEECCcccccccceeeCCCcc--EEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEEC
Confidence            7789999999977543   233344455456664  3455  333221                      1234556677


Q ss_pred             cCCceeEEeecCCcCeEEEeeeecCCceEEEEecC---CCc-EEEEecCCCCcee-eec--CCCCceEEEEEccCCCeee
Q 001415          497 TNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTAL---DGK-IKAWLYDNLGSRV-DYE--APGRWCTTMAYSADGTRTY  569 (1082)
Q Consensus       497 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~---dg~-i~iwd~~~~~~~~-~~~--~~~~~v~~~~~s~d~~~~~  569 (1082)
                      .+|+....+. -...+..+.|+|..+ .+|+-|-+   +.. -|+|-+++..... .+.  .....+.-=-|.+||..++
T Consensus       176 ~tG~~~~v~~-~~~wlgH~~fsP~dp-~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~  253 (386)
T PF14583_consen  176 KTGERKVVFE-DTDWLGHVQFSPTDP-TLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIW  253 (386)
T ss_dssp             TT--EEEEEE-ESS-EEEEEEETTEE-EEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EE
T ss_pred             CCCceeEEEe-cCccccCcccCCCCC-CEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEE
Confidence            7777555444 455677788887654 45555432   221 3677655433221 111  1122333345777776322


Q ss_pred             ecccccceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEEecCCCCCCcCeEEEcCCCCEEEEEECCC---------
Q 001415          570 QGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDN---------  640 (1082)
Q Consensus       570 ~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg---------  640 (1082)
                               .....+       ++.+..|.-+|..+++........    ....+..++||++++-=+.|.         
T Consensus       254 ---------y~~~~~-------~~~~~~i~~~d~~t~~~~~~~~~p----~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~  313 (386)
T PF14583_consen  254 ---------YDSYTP-------GGQDFWIAGYDPDTGERRRLMEMP----WCSHFMSSPDGKLFVGDGGDAPVDVADAGG  313 (386)
T ss_dssp             ---------EEEEET-------TT--EEEEEE-TTT--EEEEEEE-----SEEEEEE-TTSSEEEEEE------------
T ss_pred             ---------EEeecC-------CCCceEEEeeCCCCCCceEEEeCC----ceeeeEEcCCCCEEEecCCCCCcccccccc
Confidence                     222222       223445566677776554333221    233456678888776433332         


Q ss_pred             -------cEEEEEecCCccceeecccccc--cccccccccCCCCccccCCCCceeee-ccCCceeEEEe
Q 001415          641 -------GIKILATSDGIRLLRTFENLAY--DASRTSENSKNGDVRSLADVKPRITE-ESNDKSKVWKL  699 (1082)
Q Consensus       641 -------~i~iwd~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~s~~~~~l~~~-~~d~~i~iw~~  699 (1082)
                             .|++++...+..  ..+..|..  .+....-...-....++||++.++.. ...|...||-+
T Consensus       314 ~~~~~~p~i~~~~~~~~~~--~~l~~h~~sw~v~~~~~q~~hPhp~FSPDgk~VlF~Sd~~G~~~vY~v  380 (386)
T PF14583_consen  314 YKIENDPWIYLFDVEAGRF--RKLARHDTSWKVLDGDRQVTHPHPSFSPDGKWVLFRSDMEGPPAVYLV  380 (386)
T ss_dssp             -------EEEEEETTTTEE--EEEEE-------BTTBSSTT----EE-TTSSEEEEEE-TTSS-EEEEE
T ss_pred             ceecCCcEEEEeccccCce--eeeeeccCcceeecCCCccCCCCCccCCCCCEEEEECCCCCCccEEEE
Confidence                   344556554421  11111210  00000001112445569999988654 44565555543

>smart00668 CTLH C-terminal to LisH motif

Probab=97.99  E-value=7.9e-06  Score=62.69  Aligned_cols=52  Identities=33%  Similarity=0.523  Sum_probs=42.8

Q ss_pred             HHHHHHHhhccCHHHHHHHhccCccccCcccchhhHHHHHHHHHHHHHhcCCH
Q 001415           38 MKYFEDEVHNGNWDDVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDKHDR   90 (1082)
Q Consensus        38 ~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~lell~~~~~   90 (1082)
                      +..++++|+.|+|+.|++.+...........+ .+.|.|++|+|+||++.++.
T Consensus         5 ~~~i~~~i~~g~~~~a~~~~~~~~~~l~~~~~-~l~f~L~~q~~lell~~~~~   56 (58)
T smart00668        5 RKRIRELILKGDWDEALEWLSSLKPPLLERNS-KLEFELRKQKFLELVRQGKL   56 (58)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHcCHHHhccCC-CchhHHHHHHHHHHHHcCCc
Confidence            67899999999999999999988544322323 49999999999999998764

Alpha-helical motif of unknown function.

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.98  E-value=0.00058  Score=76.92  Aligned_cols=187  Identities=12%  Similarity=0.157  Sum_probs=124.4

Q ss_pred             cceeEEEEccCCceeeecccCCeEEEeeccccccCCCCCcccccCccccCCCCcceeecccCCCCCCCCccEEEeecCCC
Q 001415          720 TKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDS  799 (1082)
Q Consensus       720 ~~i~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~  799 (1082)
                      ..+++++++  ++.++.++.+|.+++++.+...                  .+.      +   .|...      ..+|.
T Consensus        40 D~is~~av~--~~~~~~GtH~g~v~~~~~~~~~------------------~~~------~---~~s~~------~~~Ge   84 (846)
T KOG2066|consen   40 DAISCCAVH--DKFFALGTHRGAVYLTTCQGNP------------------KTN------F---DHSSS------ILEGE   84 (846)
T ss_pred             hHHHHHHhh--cceeeeccccceEEEEecCCcc------------------ccc------c---ccccc------ccCCc
Confidence            345555554  4568888899999988654211                  000      0   02211      56899


Q ss_pred             eEEEee-CCeEEEEecCCCeeEEEECCCCCCeeEEEEecC----CCcEEEEEeCCCcEEEEeccc--ceeeeeecccccC
Q 001415          800 YVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQ----DNNIIAIGMDDSSIQIYNVRV--DEVKSKLKGHSKR  872 (1082)
Q Consensus       800 ~l~~~s-dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~----~~~~lasg~~dg~v~iwd~~~--~~~~~~l~~h~~~  872 (1082)
                      ++++++ ||+|.|..+.+.+...++. ....+.+++++|+    ..+.+++|+..| +.++.-.=  .+.-..+..-.++
T Consensus        85 y~asCS~DGkv~I~sl~~~~~~~~~d-f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~  162 (846)
T KOG2066|consen   85 YVASCSDDGKVVIGSLFTDDEITQYD-FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGP  162 (846)
T ss_pred             eEEEecCCCcEEEeeccCCccceeEe-cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccc
Confidence            999998 6999999988877776665 4567999999994    256788899888 77775331  1111245566789


Q ss_pred             EEEEEEeCCCCEEEEEeCCCcEEEEEcCCcccccceeeeccCCCCCCCCCCcEEEEcCCCcEEEEEecCeEEEEEcc
Q 001415          873 ITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETT  949 (1082)
Q Consensus       873 V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~~d~~i~iwd~~  949 (1082)
                      |.++.|.  |.++|-++.+| |+|||+.+++....  ++.+.....+......+.|.++.+ |+.|-..+|+|..++
T Consensus       163 I~~i~W~--g~lIAWand~G-v~vyd~~~~~~l~~--i~~p~~~~R~e~fpphl~W~~~~~-LVIGW~d~v~i~~I~  233 (846)
T KOG2066|consen  163 IHSIKWR--GNLIAWANDDG-VKVYDTPTRQRLTN--IPPPSQSVRPELFPPHLHWQDEDR-LVIGWGDSVKICSIK  233 (846)
T ss_pred             eEEEEec--CcEEEEecCCC-cEEEeccccceeec--cCCCCCCCCcccCCCceEecCCCe-EEEecCCeEEEEEEe
Confidence            9999996  88999999888 89999998654321  222222222223446788888766 455555567777766

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=97.97  E-value=0.00069  Score=75.30  Aligned_cols=121  Identities=10%  Similarity=0.037  Sum_probs=94.5

Q ss_pred             CCCCceEEEEecCCCeEEEEEcCCCcEEEEEccccceeeeeceeeeccCCCCcccccccccCCCCceeEEEEecCCCeEE
Q 001415          357 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFG  436 (1082)
Q Consensus       357 h~~~v~~~~~spdg~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la  436 (1082)
                      |...|.--+++..+++ ++.|+.-|.+++|+-.+++.+...                  ..+-.+.+..+..|++..++|
T Consensus        32 ~~~~v~lTc~dst~~~-l~~GsS~G~lyl~~R~~~~~~~~~------------------~~~~~~~~~~~~vs~~e~lvA   92 (726)
T KOG3621|consen   32 FPARVKLTCVDATEEY-LAMGSSAGSVYLYNRHTGEMRKLK------------------NEGATGITCVRSVSSVEYLVA   92 (726)
T ss_pred             CcceEEEEEeecCCce-EEEecccceEEEEecCchhhhccc------------------ccCccceEEEEEecchhHhhh
Confidence            5566777778888885 999999999999999888766521                  233456777788999999999


Q ss_pred             EEeCCCeEEEEEccCCceeeEEEE---eeccccCeeEEEecCCCCceEEEEEeCCCcEEEEEccC
Q 001415          437 VAYSRHIVQIYSYHGGDEVRQHLE---IDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATN  498 (1082)
Q Consensus       437 s~~~d~~v~iwd~~~~~~~~~~~~---~~~h~~~V~~l~fs~dg~~~~l~s~s~d~~i~vwd~~~  498 (1082)
                      .|+..|.|.++-+..+........   -..|...|++++|++|+.  .+++|...|+|.+-.+.+
T Consensus        93 agt~~g~V~v~ql~~~~p~~~~~~t~~d~~~~~rVTal~Ws~~~~--k~ysGD~~Gkv~~~~L~s  155 (726)
T KOG3621|consen   93 AGTASGRVSVFQLNKELPRDLDYVTPCDKSHKCRVTALEWSKNGM--KLYSGDSQGKVVLTELDS  155 (726)
T ss_pred             hhcCCceEEeehhhccCCCcceeeccccccCCceEEEEEeccccc--EEeecCCCceEEEEEech
Confidence            999999999998876433221111   123678999999999999  699999999999888776

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.96  E-value=0.0003  Score=72.49  Aligned_cols=230  Identities=12%  Similarity=0.086  Sum_probs=132.0

Q ss_pred             EEEEecCCCeeEEEECCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEecccceeeeeecccccCEEEEEEeCCC-CEEEE
Q 001415          809 ISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHAL-NVLVS  887 (1082)
Q Consensus       809 i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~-~~l~s  887 (1082)
                      +++.+..+.+....+..+...|..++|||....++..++.+..|.|.|+.+..++.....| ..+++++|.-|. .+|..
T Consensus       175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYa  253 (463)
T KOG1645|consen  175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYA  253 (463)
T ss_pred             eEEeccCCcchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEE
Confidence            6677766666666777788889999999955558999999999999999999998888888 889999998765 56777


Q ss_pred             EeCCCcEEEEEcCCcccccceeeeccCCCCCCCCCCcEE------EEcCCCcEEEEEecCeEEEEEccC--cceeeeecc
Q 001415          888 SGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRV------QFHQDQIHFLVVHETQLAIFETTK--LECVKQWVP  959 (1082)
Q Consensus       888 ~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~------~fspdg~~l~~~~d~~i~iwd~~~--~~~~~~~~~  959 (1082)
                      |...|.|.|||+...+-....+......     .+|..+      ...+.|.+|+.+. -.+..|++..  +......+.
T Consensus       254 Gl~nG~VlvyD~R~~~~~~~e~~a~~t~-----~pv~~i~~~~~n~~f~~gglLv~~l-t~l~f~ei~~s~~~~p~vlel  327 (463)
T KOG1645|consen  254 GLQNGMVLVYDMRQPEGPLMELVANVTI-----NPVHKIAPVQPNKIFTSGGLLVFAL-TVLQFYEIVFSAECLPCVLEL  327 (463)
T ss_pred             eccCceEEEEEccCCCchHhhhhhhhcc-----CcceeecccCccccccccceEEeee-hhhhhhhhhccccCCCccccc
Confidence            7789999999998754322211111110     122222      2233455554422 2244554421  112121221


Q ss_pred             CCCCcceeEEEEcCCCceEEEeecC-C------cEE-EEecCCceeeeeeCCCeecCCCCCCCCceeeEEEEeCCCCCe-
Q 001415          960 RESSAPITHATFSCDSQLVYACFLD-A------TVC-VFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNE- 1030 (1082)
Q Consensus       960 ~~h~~~i~~l~~s~dg~~l~t~s~d-g------~v~-vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~~~~~~~d~~~- 1030 (1082)
                       +..+...++.+.+-...++..... .      .|- --|..+|..++..+...+   |-...........+.+.|+++ 
T Consensus       328 -e~pG~cismqy~~~snh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~---Gs~~~kl~t~~ai~~~~~nn~i  403 (463)
T KOG1645|consen  328 -EPPGICISMQYHGVSNHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYF---GSKQTKLSTTQAIRAVEDNNYI  403 (463)
T ss_pred             -CCCcceeeeeecCccceEEEEecCCCCCccceeeeeeeccccCceeeeeccccc---CCcccccccccceeccccccEE
Confidence             113445555555544444433322 1      111 123345555554332221   100000111122233334555 


Q ss_pred             EEEEecCCcEEEEccCCCC
Q 001415         1031 FALGLSDGGVHVFEPLESE 1049 (1082)
Q Consensus      1031 l~s~~~dg~v~vW~~~~~~ 1049 (1082)
                      +.+|++.+.+.+||+.+.+
T Consensus       404 v~~gd~tn~lil~D~~s~e  422 (463)
T KOG1645|consen  404 VVVGDSTNELILQDPHSFE  422 (463)
T ss_pred             EEecCCcceeEEeccchhh
Confidence            4556677899999999998

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=97.96  E-value=0.00016  Score=82.19  Aligned_cols=185  Identities=11%  Similarity=0.098  Sum_probs=128.7

Q ss_pred             CCCeEEEEeCCCeEEEEEccCCceeeEEEEeeccccCeeEEEecCCCCceEEEEEeCCCcEEEEEccCCceeEEeecCCc
Q 001415          431 DGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEA  510 (1082)
Q Consensus       431 dg~~las~~~d~~v~iwd~~~~~~~~~~~~~~~h~~~V~~l~fs~dg~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~  510 (1082)
                      ++..++.|+-...+..+|+.+.+..+   ...-..+.|.-+.  .+++  ++.+|...|+|.+-|..+-+.++++.+|.+
T Consensus       146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r---~~~v~a~~v~imR--~Nnr--~lf~G~t~G~V~LrD~~s~~~iht~~aHs~  218 (1118)
T KOG1275|consen  146 GPSTLIMGGLQEKLIHIDLNTEKETR---TTNVSASGVTIMR--YNNR--NLFCGDTRGTVFLRDPNSFETIHTFDAHSG  218 (1118)
T ss_pred             CCcceeecchhhheeeeecccceeee---eeeccCCceEEEE--ecCc--EEEeecccceEEeecCCcCceeeeeecccc
Confidence            45667778877888899999887655   2222233455554  3566  799999999999999999999999999999


Q ss_pred             CeEEEeeeecCCceEEEEecC---------CCcEEEEecCCCCceeeecCCCCceEEEEEccCCCeeeecccccceeEEE
Q 001415          511 PVYSVCPHHKENIQFIFSTAL---------DGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQ  581 (1082)
Q Consensus       511 ~v~~~~~~~~~~~~~l~s~~~---------dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~i~~~~  581 (1082)
                      .|..+..    .|+.|++||.         |..|++||++..+....+..+-++ .-+.|.|.-                
T Consensus       219 siSDfDv----~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P-~flrf~Psl----------------  277 (1118)
T KOG1275|consen  219 SISDFDV----QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGP-QFLRFHPSL----------------  277 (1118)
T ss_pred             ceeeeec----cCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCc-hhhhhcccc----------------
Confidence            9988764    3367888874         556899999876655433332221 111222211                


Q ss_pred             ecCCCCEEEEEeCCCeEEEEECCC-cce-EEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEe
Q 001415          582 FDTTKNRFLAAGDDFSIKFWDMDS-VQL-LTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILAT  647 (1082)
Q Consensus       582 ~~~~~~~l~~~~~dg~i~iwd~~~-~~~-~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~iwd~  647 (1082)
                          -.++++++..|...+-|..+ ..+ ......+.....+..+.++++|+.++.|..+|.|.+|.-
T Consensus       278 ----~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa~  341 (1118)
T KOG1275|consen  278 ----TTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWAD  341 (1118)
T ss_pred             ----cceEEEEecccceeeccccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeecC
Confidence                12577888889888888332 111 222222223335889999999999999999999999973

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=97.95  E-value=0.0095  Score=68.96  Aligned_cols=157  Identities=15%  Similarity=0.136  Sum_probs=90.6

Q ss_pred             EEEecCCCcEEEEEeCCC------------------cEEEEecccceeeeeecc--ccc----CEEEEEEe----CCCC-
Q 001415          833 LAFHPQDNNIIAIGMDDS------------------SIQIYNVRVDEVKSKLKG--HSK----RITGLAFS----HALN-  883 (1082)
Q Consensus       833 l~~sp~~~~~lasg~~dg------------------~v~iwd~~~~~~~~~l~~--h~~----~V~~l~~s----~d~~-  883 (1082)
                      .++.+ .+.+++.++.++                  .|.-+|..+|+.+-..+.  |..    ......+.    -++. 
T Consensus       222 pa~d~-~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~  300 (488)
T cd00216         222 PTYDP-KTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKP  300 (488)
T ss_pred             eeEeC-CCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccccCCCe
Confidence            45555 455666676665                  799999999988766531  210    00011111    2343 


Q ss_pred             --EEEEEeCCCcEEEEEcCCcccccceeeeccCCCCCCCCCCcEEEEcCCCcEEEE------------------EecCeE
Q 001415          884 --VLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV------------------VHETQL  943 (1082)
Q Consensus       884 --~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~------------------~~d~~i  943 (1082)
                        .++.++.+|.+...|..+++..=......           ..++.+| +...+.                  ..++.+
T Consensus       301 ~~~V~~g~~~G~l~ald~~tG~~~W~~~~~~-----------~~~~~~~-~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l  368 (488)
T cd00216         301 VPAIVHAPKNGFFYVLDRTTGKLISARPEVE-----------QPMAYDP-GLVYLGAFHIPLGLPPQKKKRCKKPGKGGL  368 (488)
T ss_pred             eEEEEEECCCceEEEEECCCCcEeeEeEeec-----------cccccCC-ceEEEccccccccCcccccCCCCCCCceEE
Confidence              57778889999999999976532211110           1122233 211111                  124667


Q ss_pred             EEEEccCcceeeeeccCCCC------cceeEEEEcCCCceEEEeecCCcEEEEecCCceeeeeeC
Q 001415          944 AIFETTKLECVKQWVPRESS------APITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRIN 1002 (1082)
Q Consensus       944 ~iwd~~~~~~~~~~~~~~h~------~~i~~l~~s~dg~~l~t~s~dg~v~vwd~~~~~~~~~~~ 1002 (1082)
                      .-.|..+|+.+-......+.      .+...-.....+..|++++.||.++.+|..+|+++-+.+
T Consensus       369 ~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~~g~~v~~g~~dG~l~ald~~tG~~lW~~~  433 (488)
T cd00216         369 AALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLATAGNLVFAGAADGYFRAFDATTGKELWKFR  433 (488)
T ss_pred             EEEeCCCCcEeeEeeCCccccccccCCcccCcceEecCCeEEEECCCCeEEEEECCCCceeeEEE
Confidence            77788888776555432111      111110111256788889999999999999999998866

The alignment model contains an 8-bladed beta-propeller.

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=97.92  E-value=0.00047  Score=76.67  Aligned_cols=164  Identities=16%  Similarity=0.128  Sum_probs=96.5

Q ss_pred             eecCCCCCceEEEEecCCCeEEEEEcC--C-CcEEEEEccccceeeeeceeeeccCCCCcccccccccCCCCceeEEEEe
Q 001415          353 RTLNQGSSPMSMDFHPVQQTLLLVGTN--V-GDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWS  429 (1082)
Q Consensus       353 ~~~~h~~~v~~~~~spdg~~llasgs~--d-g~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s  429 (1082)
                      .+..-...+..-+|+|+++.+....-.  . ..+.++|+++++.....+                    -.+.-..-+||
T Consensus       187 ~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~--------------------~~g~~~~P~fs  246 (425)
T COG0823         187 KLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN--------------------FNGNNGAPAFS  246 (425)
T ss_pred             EecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec--------------------cCCccCCccCC
Confidence            344456778888999999974443222  2 459999999887665322                    22344556899


Q ss_pred             cCCCeEEEEe-CCCe--EEEEEccCCceeeEEEEeeccccCeeEEEecCCCCceEEEEEeCCCc--EEEEEccCCceeEE
Q 001415          430 PDGSLFGVAY-SRHI--VQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKT--IKVWDATNGAKQYI  504 (1082)
Q Consensus       430 pdg~~las~~-~d~~--v~iwd~~~~~~~~~~~~~~~h~~~V~~l~fs~dg~~~~l~s~s~d~~--i~vwd~~~~~~~~~  504 (1082)
                      |||++||.+. .||.  |.+.|+.++...+    +..-.+.-..-.|+|||+. ++++.+..|.  |.+.|++.+.. ..
T Consensus       247 pDG~~l~f~~~rdg~~~iy~~dl~~~~~~~----Lt~~~gi~~~Ps~spdG~~-ivf~Sdr~G~p~I~~~~~~g~~~-~r  320 (425)
T COG0823         247 PDGSKLAFSSSRDGSPDIYLMDLDGKNLPR----LTNGFGINTSPSWSPDGSK-IVFTSDRGGRPQIYLYDLEGSQV-TR  320 (425)
T ss_pred             CCCCEEEEEECCCCCccEEEEcCCCCccee----cccCCccccCccCCCCCCE-EEEEeCCCCCcceEEECCCCCce-eE
Confidence            9999998775 4554  6666777766322    3333333347789999997 4445555665  55555554444 33


Q ss_pred             eecCCcCeEEEeeeecCCceEEEEecC-CCc--EEEEecCCCC
Q 001415          505 FEGHEAPVYSVCPHHKENIQFIFSTAL-DGK--IKAWLYDNLG  544 (1082)
Q Consensus       505 ~~~h~~~v~~~~~~~~~~~~~l~s~~~-dg~--i~iwd~~~~~  544 (1082)
                      +....+.-..-.|+  ++|.+++..+. +|.  |.+.|+.+..
T Consensus       321 iT~~~~~~~~p~~S--pdG~~i~~~~~~~g~~~i~~~~~~~~~  361 (425)
T COG0823         321 LTFSGGGNSNPVWS--PDGDKIVFESSSGGQWDIDKNDLASGG  361 (425)
T ss_pred             eeccCCCCcCccCC--CCCCEEEEEeccCCceeeEEeccCCCC
Confidence            33222222233444  45566666664 344  5555554444

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=97.91  E-value=0.0066  Score=68.03  Aligned_cols=228  Identities=14%  Similarity=0.178  Sum_probs=122.2

Q ss_pred             EEeecCCCeEEEeeCC------------eEEEEecCCCeeEEEECCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEeccc
Q 001415          792 FALSKNDSYVMSASGG------------KISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRV  859 (1082)
Q Consensus       792 l~~s~dg~~l~~~sdg------------~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~  859 (1082)
                      ++.+|.|..+|...+.            .|.||+.. |+.+..+.-..+.+.++.|+. +..++ +-..||.+++||+..
T Consensus        34 va~a~~gGpIAi~~d~~k~~~~~~~~p~~I~iys~s-G~ll~~i~w~~~~iv~~~wt~-~e~Lv-vV~~dG~v~vy~~~G  110 (410)
T PF04841_consen   34 VAVAPYGGPIAIIRDESKLVPVGSAKPNSIQIYSSS-GKLLSSIPWDSGRIVGMGWTD-DEELV-VVQSDGTVRVYDLFG  110 (410)
T ss_pred             EEEcCCCceEEEEecCcccccccCCCCcEEEEECCC-CCEeEEEEECCCCEEEEEECC-CCeEE-EEEcCCEEEEEeCCC
Confidence            4556666666665544            58899875 455555443348899999997 55454 566899999999863


Q ss_pred             ce------eeeeecccccCEEEEEEeCCCCEEEEEeCCCcEEEEEcCCcccc-cceee-eccCCCC---CCCCCCc-EEE
Q 001415          860 DE------VKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQ-KNRFL-QIPTGRT---PTAQSDT-RVQ  927 (1082)
Q Consensus       860 ~~------~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~-~~~~~-~~~~~~~---~~~~~v~-~~~  927 (1082)
                      ..      .+....-....+....+..+|-.+.+  .++.+  |-+...... ..+.. ..+....   .. .... ...
T Consensus       111 ~~~fsl~~~i~~~~v~e~~i~~~~~~~~GivvLt--~~~~~--~~v~n~~~~~~~~~~~~~p~~~~~~~~~-~~~~~i~~  185 (410)
T PF04841_consen  111 EFQFSLGEEIEEEKVLECRIFAIWFYKNGIVVLT--GNNRF--YVVNNIDEPVKLRRLPEIPGLWTKFHWW-PSWTVIPL  185 (410)
T ss_pred             ceeechhhhccccCcccccccccccCCCCEEEEC--CCCeE--EEEeCccccchhhccccCCCcccccccc-cccccceE
Confidence            32      11111222233333344445633333  34433  333332211 10111 1111100   00 0111 133


Q ss_pred             EcCCCcEEEE-EecCeEEEEEccCcceeeeeccCCCCcceeEEEEcCCCceEEEeecCCcEEEEecCCceeeeeeCCCee
Q 001415          928 FHQDQIHFLV-VHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAY 1006 (1082)
Q Consensus       928 fspdg~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~dg~~l~t~s~dg~v~vwd~~~~~~~~~~~~~~~ 1006 (1082)
                      ++.+....+. ..++.+.+.+....+.   .   ...+++..|++||+|++||.-..+|.+.|.+.+-.+.++.+...  
T Consensus       186 l~~~~~~~i~~~~g~~i~~i~~~~~~~---i---~~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~--  257 (410)
T PF04841_consen  186 LSSDRVVEILLANGETIYIIDENSFKQ---I---DSDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTD--  257 (410)
T ss_pred             eecCcceEEEEecCCEEEEEEcccccc---c---cCCCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecC--
Confidence            4555544444 4445555444322211   1   12468999999999999999999999999988777777766622  


Q ss_pred             cCCCCCCCCceeeEEEEeCCCCCeEEEEecCCcEEEEcc
Q 001415         1007 LPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEP 1045 (1082)
Q Consensus      1007 ~~~gh~~~~v~~~~~~~~~~d~~~l~s~~~dg~v~vW~~ 1045 (1082)
                             ....+..+.|+.+|  -++..- ...|.+...
T Consensus       258 -------~~~~p~~~~WCG~d--av~l~~-~~~l~lvg~  286 (410)
T PF04841_consen  258 -------SKSPPKQMAWCGND--AVVLSW-EDELLLVGP  286 (410)
T ss_pred             -------cCCCCcEEEEECCC--cEEEEe-CCEEEEECC
Confidence                   11345567777532  222222 445555543

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=97.90  E-value=0.014  Score=59.56  Aligned_cols=163  Identities=8%  Similarity=0.111  Sum_probs=97.7

Q ss_pred             CCCCCceEEEEecCCCeEEEEEcCCCcEEEEEccccceeeeeceeeeccCCCCcccccccccCCCCceeEEEEecCCCeE
Q 001415          356 NQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLF  435 (1082)
Q Consensus       356 ~h~~~v~~~~~spdg~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l  435 (1082)
                      +-..++..++|.|+...|+++....+.|...+. +|+.+.+..                 +.+ -+..-.|++..++.++
T Consensus        19 g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~-----------------l~g-~~D~EgI~y~g~~~~v   79 (248)
T PF06977_consen   19 GILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIP-----------------LDG-FGDYEGITYLGNGRYV   79 (248)
T ss_dssp             T--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE------------------SS--SSEEEEEE-STTEEE
T ss_pred             CccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEe-----------------CCC-CCCceeEEEECCCEEE
Confidence            345679999999998888999999999998987 477776532                 223 3478889998888888


Q ss_pred             EEEeCCCeEEEEEccCCce---eeE--EEEee---ccccCeeEEEecCCCCceEEEEEeCCCcEEEEEccC---CceeEE
Q 001415          436 GVAYSRHIVQIYSYHGGDE---VRQ--HLEID---AHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATN---GAKQYI  504 (1082)
Q Consensus       436 as~~~d~~v~iwd~~~~~~---~~~--~~~~~---~h~~~V~~l~fs~dg~~~~l~s~s~d~~i~vwd~~~---~~~~~~  504 (1082)
                      ++.-.++.+.++++.....   ...  ...+.   .+...+-.++|.+.++.  |+.+-...-..++.+..   +..+..
T Consensus        80 l~~Er~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~--L~v~kE~~P~~l~~~~~~~~~~~~~~  157 (248)
T PF06977_consen   80 LSEERDQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNR--LFVAKERKPKRLYEVNGFPGGFDLFV  157 (248)
T ss_dssp             EEETTTTEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTE--EEEEEESSSEEEEEEESTT-SS--EE
T ss_pred             EEEcCCCcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCE--EEEEeCCCChhhEEEccccCccceee
Confidence            7776789999998843221   111  11111   24567899999999885  44445555566666653   222221


Q ss_pred             e--------ecCCcCeEEEeeeecCCceEEEEecCCCcEEEEec
Q 001415          505 F--------EGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLY  540 (1082)
Q Consensus       505 ~--------~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~  540 (1082)
                      .        ......+.++++++. .+++++.......|..+|.
T Consensus       158 ~~~~~~~~~~~~~~d~S~l~~~p~-t~~lliLS~es~~l~~~d~  200 (248)
T PF06977_consen  158 SDDQDLDDDKLFVRDLSGLSYDPR-TGHLLILSDESRLLLELDR  200 (248)
T ss_dssp             EE-HHHH-HT--SS---EEEEETT-TTEEEEEETTTTEEEEE-T
T ss_pred             ccccccccccceeccccceEEcCC-CCeEEEEECCCCeEEEECC
Confidence            1        123345788888875 4578888888888888884

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>smart00667 LisH Lissencephaly type-1-like homology motif

Probab=97.89  E-value=1.9e-05  Score=52.73  Aligned_cols=32  Identities=38%  Similarity=0.527  Sum_probs=29.7

Q ss_pred             chHHHHHHHHHHHhhcChHHHHHHHHHhcCCC
Q 001415            4 LSRELVFLILQFLDEEKFKETVHKLEQESGFF   35 (1082)
Q Consensus         4 ~~~~~~~li~q~L~~~g~~~s~~~L~~Esg~~   35 (1082)
                      .++++.++|+|||..+||.+|+++|++|+|+.
T Consensus         2 ~~~~l~~lI~~yL~~~g~~~ta~~l~~e~~~~   33 (34)
T smart00667        2 SRSELNRLILEYLLRNGYEETAETLQKESGLS   33 (34)
T ss_pred             cHHHHHHHHHHHHHHcCHHHHHHHHHHHhCCC
Confidence            36789999999999999999999999999974

Alpha-helical motif present in Lis1, treacle, Nopp140, some katanin p60 subunits, muskelin, tonneau, LEUNIG and numerous WD40 repeat-containing proteins. It is suggested that LisH motifs contribute to the regulation of microtubule dynamics, either by mediating dimerisation, or else by binding cytoplasmic dynein heavy chain or microtubules directly.

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=97.87  E-value=0.0018  Score=65.84  Aligned_cols=215  Identities=11%  Similarity=0.118  Sum_probs=116.2

Q ss_pred             EEECCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEecccceeeeeeccc-ccCEEEEEEeCCCCEEEEEeCCCcEEEEEc
Q 001415          821 ATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGH-SKRITGLAFSHALNVLVSSGADSQLCVWSS  899 (1082)
Q Consensus       821 ~~~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h-~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~  899 (1082)
                      +.+.+....+..++|.|+++.++|+....+.|..++. +|+.++++.-. .+..-+|++..++.++++--.++.+.+.++
T Consensus        15 ~~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~   93 (248)
T PF06977_consen   15 KPLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTI   93 (248)
T ss_dssp             EE-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE
T ss_pred             eECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEE
Confidence            3455666679999999966788899999999998886 47777766432 356788999988888777767899999998


Q ss_pred             CCccc--ccceeeeccCCC-CCCCCCCcEEEEcCCCcEEEEEec-CeEEEEEccC---cceeee-----ec-cCCCCcce
Q 001415          900 DGWEK--QKNRFLQIPTGR-TPTAQSDTRVQFHQDQIHFLVVHE-TQLAIFETTK---LECVKQ-----WV-PRESSAPI  966 (1082)
Q Consensus       900 ~~~~~--~~~~~~~~~~~~-~~~~~~v~~~~fspdg~~l~~~~d-~~i~iwd~~~---~~~~~~-----~~-~~~h~~~i  966 (1082)
                      .....  ..........+. .........++|.|.+..|+++.+ .-..+|.+..   ...+..     +. .......+
T Consensus        94 ~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~  173 (248)
T PF06977_consen   94 DDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDL  173 (248)
T ss_dssp             ----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS--
T ss_pred             eccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceeccc
Confidence            44221  111111111111 112246789999998777766544 3456666543   111111     11 11234568


Q ss_pred             eEEEEcCC-CceEEEeecCCcEEEEecCCceeeeeeCCCeecCCCCC---CCCceeeEEEEeCCCCCeEEEEecCCcEEE
Q 001415          967 THATFSCD-SQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVS---SSNVHPLVIAAHPQEPNEFALGLSDGGVHV 1042 (1082)
Q Consensus       967 ~~l~~s~d-g~~l~t~s~dg~v~vwd~~~~~~~~~~~~~~~~~~gh~---~~~v~~~~~~~~~~d~~~l~s~~~dg~v~v 1042 (1082)
                      .++++.|. |.+++.......|..+| .+|+.+..+.    +..|..   .....+-.++|.+ +|++.++ ++-+...+
T Consensus       174 S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~----L~~g~~gl~~~~~QpEGIa~d~-~G~LYIv-sEpNlfy~  246 (248)
T PF06977_consen  174 SGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLS----LDRGFHGLSKDIPQPEGIAFDP-DGNLYIV-SEPNLFYR  246 (248)
T ss_dssp             -EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-----STTGGG-SS---SEEEEEE-T-T--EEEE-ETTTEEEE
T ss_pred             cceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEE----eCCcccCcccccCCccEEEECC-CCCEEEE-cCCceEEE
Confidence            89999986 45666677788899999 7787776655    222210   1113456799998 5755544 45554444


Q ss_pred             E
Q 001415         1043 F 1043 (1082)
Q Consensus      1043 W 1043 (1082)
                      +
T Consensus       247 f  247 (248)
T PF06977_consen  247 F  247 (248)
T ss_dssp             E
T ss_pred             e
Confidence            3

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=97.87  E-value=0.0019  Score=72.10  Aligned_cols=224  Identities=12%  Similarity=0.122  Sum_probs=116.0

Q ss_pred             ccceeEEEEccCCceeeecccCCeEEEeeccccccCCCCCcccccCccccCCCCcceeecccCCCCCCCCccEEEeecCC
Q 001415          719 ATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKND  798 (1082)
Q Consensus       719 ~~~i~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg  798 (1082)
                      ......+.++|+|+.+++ +.+|...++....                      ....        ..+....++|.+.+
T Consensus        32 ~~~p~~ls~npngr~v~V-~g~geY~iyt~~~----------------------~r~k--------~~G~g~~~vw~~~n   80 (443)
T PF04053_consen   32 EIYPQSLSHNPNGRFVLV-CGDGEYEIYTALA----------------------WRNK--------AFGSGLSFVWSSRN   80 (443)
T ss_dssp             SS--SEEEE-TTSSEEEE-EETTEEEEEETTT----------------------TEEE--------EEEE-SEEEE-TSS
T ss_pred             CcCCeeEEECCCCCEEEE-EcCCEEEEEEccC----------------------Cccc--------ccCceeEEEEecCc
Confidence            344688999999998877 6666666664110                      0000        23345678898877


Q ss_pred             CeEEEeeCCeEEEEecCCCeeEEEECCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEecccceeeeeecccccCEEEEEE
Q 001415          799 SYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAF  878 (1082)
Q Consensus       799 ~~l~~~sdg~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~  878 (1082)
                      ++.+.-..++|.|+.--+......+... ..+..+-    .|.+|+..+.+ .|.+||+.+++.+.++...  +|..+.|
T Consensus        81 ~yAv~~~~~~I~I~kn~~~~~~k~i~~~-~~~~~If----~G~LL~~~~~~-~i~~yDw~~~~~i~~i~v~--~vk~V~W  152 (443)
T PF04053_consen   81 RYAVLESSSTIKIYKNFKNEVVKSIKLP-FSVEKIF----GGNLLGVKSSD-FICFYDWETGKLIRRIDVS--AVKYVIW  152 (443)
T ss_dssp             EEEEE-TTS-EEEEETTEE-TT-----S-S-EEEEE-----SSSEEEEETT-EEEEE-TTT--EEEEESS---E-EEEEE
T ss_pred             cEEEEECCCeEEEEEcCccccceEEcCC-cccceEE----cCcEEEEECCC-CEEEEEhhHcceeeEEecC--CCcEEEE
Confidence            7555555788999633222222233321 1233332    26677766544 8999999999999998844  3899999


Q ss_pred             eCCCCEEEEEeCCCcEEEEEcCCc------c-cccceeeeccCCCCCCCCCCcEEEEcCCCcEEEEEecCeEEEEEccCc
Q 001415          879 SHALNVLVSSGADSQLCVWSSDGW------E-KQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKL  951 (1082)
Q Consensus       879 s~d~~~l~s~s~Dg~i~vwd~~~~------~-~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~~d~~i~iwd~~~~  951 (1082)
                      +++|.+++..+.+. +.+++.+..      + -....+....+..    ..|.+.+|..|  .++.++.++++.  +-.|
T Consensus       153 s~~g~~val~t~~~-i~il~~~~~~~~~~~~~g~e~~f~~~~E~~----~~IkSg~W~~d--~fiYtT~~~lkY--l~~G  223 (443)
T PF04053_consen  153 SDDGELVALVTKDS-IYILKYNLEAVAAIPEEGVEDAFELIHEIS----ERIKSGCWVED--CFIYTTSNHLKY--LVNG  223 (443)
T ss_dssp             -TTSSEEEEE-S-S-EEEEEE-HHHHHHBTTTB-GGGEEEEEEE-----S--SEEEEETT--EEEEE-TTEEEE--EETT
T ss_pred             ECCCCEEEEEeCCe-EEEEEecchhcccccccCchhceEEEEEec----ceeEEEEEEcC--EEEEEcCCeEEE--EEcC
Confidence            99999999998664 778776542      0 0000111111101    46788999888  344444446666  3334


Q ss_pred             ce--eeeeccCCCCcceeEEEEcCCCceEEEeecCCcEEEEecCCc
Q 001415          952 EC--VKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANL  995 (1082)
Q Consensus       952 ~~--~~~~~~~~h~~~i~~l~~s~dg~~l~t~s~dg~v~vwd~~~~  995 (1082)
                      +.  +..+     ..++.=+.+.+....+.....|+.|..+.++..
T Consensus       224 e~~~i~~l-----d~~~yllgy~~~~~~ly~~Dr~~~v~~~~ld~~  264 (443)
T PF04053_consen  224 ETGIIAHL-----DKPLYLLGYLPKENRLYLIDRDGNVISYELDLS  264 (443)
T ss_dssp             EEEEEEE------SS--EEEEEETTTTEEEEE-TT--EEEEE--HH
T ss_pred             CcceEEEc-----CCceEEEEEEccCCEEEEEECCCCEEEEEECHH
Confidence            33  2222     245666677777778888888888888876643

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=97.86  E-value=0.00022  Score=78.15  Aligned_cols=129  Identities=11%  Similarity=0.098  Sum_probs=89.5

Q ss_pred             eeeecCCCCCceEEEEecCCCeEEEEE----cCCCc----EEEEEccccceeeeeceeeeccCCCCcccccccccCCCCc
Q 001415          351 VTRTLNQGSSPMSMDFHPVQQTLLLVG----TNVGD----IGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVS  422 (1082)
Q Consensus       351 ~~~~~~h~~~v~~~~~spdg~~llasg----s~dg~----i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~  422 (1082)
                      +.....-+....++.||-...+.+.+-    +.+|.    -.+|++..++. +...+               .--.....
T Consensus       198 vL~yirTE~dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~kl-qrvsv---------------tsipL~s~  261 (545)
T PF11768_consen  198 VLSYIRTENDPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKL-QRVSV---------------TSIPLPSQ  261 (545)
T ss_pred             EEEEEEecCCcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCce-eEEEE---------------EEEecCCc
Confidence            333334455667888887555444442    23444    35666654432 22111               12356679


Q ss_pred             eeEEEEecCCCeEEEEeCCCeEEEEEccCCceeeEEEEeeccccCeeEEEecCCCCceEEEEEeCCCcEEEEEccCCcee
Q 001415          423 VNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQ  502 (1082)
Q Consensus       423 V~~l~~spdg~~las~~~d~~v~iwd~~~~~~~~~~~~~~~h~~~V~~l~fs~dg~~~~l~s~s~d~~i~vwd~~~~~~~  502 (1082)
                      |.|++++|+.+.|+.|+.||+|++||...+...     +..+.-..+.++|+|+|.  ++++|+..|.+.+||+.-+...
T Consensus       262 v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~-----~~ka~~~P~~iaWHp~ga--i~~V~s~qGelQ~FD~ALspi~  334 (545)
T PF11768_consen  262 VICCARSPSEDKLVLGCEDGSIILYDTTRGVTL-----LAKAEFIPTLIAWHPDGA--IFVVGSEQGELQCFDMALSPIK  334 (545)
T ss_pred             ceEEecCcccceEEEEecCCeEEEEEcCCCeee-----eeeecccceEEEEcCCCc--EEEEEcCCceEEEEEeecCccc
Confidence            999999999999999999999999999876432     223345678999999999  8999999999999998755443

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=97.85  E-value=0.0044  Score=69.22  Aligned_cols=221  Identities=17%  Similarity=0.192  Sum_probs=118.8

Q ss_pred             CCCccEEEeecCCCeEEEeeCCeEEEEecCCCeeEEEECCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEecccceeeee
Q 001415          786 EEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSK  865 (1082)
Q Consensus       786 ~~~i~~l~~s~dg~~l~~~sdg~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~  865 (1082)
                      ...+..+.++|+|++++++++|...|+.....+....     +.....+|.+ .++ +|+-...++|.|+.--+.+....
T Consensus        32 ~~~p~~ls~npngr~v~V~g~geY~iyt~~~~r~k~~-----G~g~~~vw~~-~n~-yAv~~~~~~I~I~kn~~~~~~k~  104 (443)
T PF04053_consen   32 EIYPQSLSHNPNGRFVLVCGDGEYEIYTALAWRNKAF-----GSGLSFVWSS-RNR-YAVLESSSTIKIYKNFKNEVVKS  104 (443)
T ss_dssp             SS--SEEEE-TTSSEEEEEETTEEEEEETTTTEEEEE-----EE-SEEEE-T-SSE-EEEE-TTS-EEEEETTEE-TT--
T ss_pred             CcCCeeEEECCCCCEEEEEcCCEEEEEEccCCccccc-----CceeEEEEec-Ccc-EEEEECCCeEEEEEcCccccceE
Confidence            3457899999999999999999999998555444332     2356788998 665 55566688999974333333233


Q ss_pred             ecccccCEEEEEEeCCCCEEEEEeCCCcEEEEEcCCcccccceeeeccCCCCCCCCCCcEEEEcCCCcEEEEEecCeEEE
Q 001415          866 LKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAI  945 (1082)
Q Consensus       866 l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~~d~~i~i  945 (1082)
                      +... ..+..|-.   |.+|...+.+ .|.+||+.+++.     +.....     ..|..+.|+++|.+++...+..+.|
T Consensus       105 i~~~-~~~~~If~---G~LL~~~~~~-~i~~yDw~~~~~-----i~~i~v-----~~vk~V~Ws~~g~~val~t~~~i~i  169 (443)
T PF04053_consen  105 IKLP-FSVEKIFG---GNLLGVKSSD-FICFYDWETGKL-----IRRIDV-----SAVKYVIWSDDGELVALVTKDSIYI  169 (443)
T ss_dssp             ---S-S-EEEEE----SSSEEEEETT-EEEEE-TTT--E-----EEEESS------E-EEEEE-TTSSEEEEE-S-SEEE
T ss_pred             EcCC-cccceEEc---CcEEEEECCC-CEEEEEhhHcce-----eeEEec-----CCCcEEEEECCCCEEEEEeCCeEEE
Confidence            3322 12444433   8888877655 799999999653     222221     2368999999999999988888888


Q ss_pred             EEccCc-----------ceeeeeccCCCCcceeEEEEcCCCceEEEeecCCcEEEEecCCcee--eeeeCCCeecCCCCC
Q 001415          946 FETTKL-----------ECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKL--RCRINPSAYLPAGVS 1012 (1082)
Q Consensus       946 wd~~~~-----------~~~~~~~~~~h~~~i~~l~~s~dg~~l~t~s~dg~v~vwd~~~~~~--~~~~~~~~~~~~gh~ 1012 (1082)
                      ++.+..           ..+....  .-...|.+.+|-.| -++.|. .. .++-  +-.|+.  ++.+.          
T Consensus       170 l~~~~~~~~~~~~~g~e~~f~~~~--E~~~~IkSg~W~~d-~fiYtT-~~-~lkY--l~~Ge~~~i~~ld----------  232 (443)
T PF04053_consen  170 LKYNLEAVAAIPEEGVEDAFELIH--EISERIKSGCWVED-CFIYTT-SN-HLKY--LVNGETGIIAHLD----------  232 (443)
T ss_dssp             EEE-HHHHHHBTTTB-GGGEEEEE--EE-S--SEEEEETT-EEEEE--TT-EEEE--EETTEEEEEEE-S----------
T ss_pred             EEecchhcccccccCchhceEEEE--EecceeEEEEEEcC-EEEEEc-CC-eEEE--EEcCCcceEEEcC----------
Confidence            876443           0111111  11457888888766 444443 33 6654  333332  22222          


Q ss_pred             CCCceeeEEEEeCCCCCeEEEEecCCcEEEEccCCCC
Q 001415         1013 SSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESE 1049 (1082)
Q Consensus      1013 ~~~v~~~~~~~~~~d~~~l~s~~~dg~v~vW~~~~~~ 1049 (1082)
                       ...+  -+.+.++ .+.+.....|+.|..+.+...+
T Consensus       233 -~~~y--llgy~~~-~~~ly~~Dr~~~v~~~~ld~~~  265 (443)
T PF04053_consen  233 -KPLY--LLGYLPK-ENRLYLIDRDGNVISYELDLSE  265 (443)
T ss_dssp             -S--E--EEEEETT-TTEEEEE-TT--EEEEE--HHH
T ss_pred             -CceE--EEEEEcc-CCEEEEEECCCCEEEEEECHHH
Confidence             2244  4555663 4678888899999888776554

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=97.84  E-value=0.011  Score=63.05  Aligned_cols=290  Identities=13%  Similarity=0.070  Sum_probs=138.5

Q ss_pred             eEEEEccCCceeeeccc-CCeEEEeeccccccCCCCCcccccCccccCCCCcceeecccCCCCCCCCccEEEeecCCCeE
Q 001415          723 SRLIFTNSGNAILALAS-NAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYV  801 (1082)
Q Consensus       723 ~~~~~s~~~~~l~~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~l  801 (1082)
                      ..-+|.+||+.|+.++. +|.-.+|-+                    |+.++...+..-.   .........++++++.+
T Consensus        39 ~~~~ft~dG~kllF~s~~dg~~nly~l--------------------DL~t~~i~QLTdg---~g~~~~g~~~s~~~~~~   95 (386)
T PF14583_consen   39 YQNCFTDDGRKLLFASDFDGNRNLYLL--------------------DLATGEITQLTDG---PGDNTFGGFLSPDDRAL   95 (386)
T ss_dssp             TS--B-TTS-EEEEEE-TTSS-EEEEE--------------------ETTT-EEEE---S---S-B-TTT-EE-TTSSEE
T ss_pred             cCCCcCCCCCEEEEEeccCCCcceEEE--------------------EcccCEEEECccC---CCCCccceEEecCCCeE
Confidence            34567889977766555 554444432                    4555555553211   11223356677888887


Q ss_pred             EEee-CCeEEEEecCCCeeEEEECCCCCCeeEEEEe-cCCCcEEEEEeC----------------------CCcEEEEec
Q 001415          802 MSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFH-PQDNNIIAIGMD----------------------DSSIQIYNV  857 (1082)
Q Consensus       802 ~~~s-dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s-p~~~~~lasg~~----------------------dg~v~iwd~  857 (1082)
                      +... +..|+-.|+.+.+....+......+....|. ..|+..++-.-.                      ...|.-.|+
T Consensus        96 ~Yv~~~~~l~~vdL~T~e~~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl  175 (386)
T PF14583_consen   96 YYVKNGRSLRRVDLDTLEERVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDL  175 (386)
T ss_dssp             EEEETTTEEEEEETTT--EEEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEET
T ss_pred             EEEECCCeEEEEECCcCcEEEEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEEC
Confidence            7654 5689999999988777776666666556664 225555442211                      123455566


Q ss_pred             ccceeeeeecccccCEEEEEEeCCCCEEEEEeCCC-----cEEEEEcCCcccccceeeeccCCCCCCCCCCcEEEEcCCC
Q 001415          858 RVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADS-----QLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQ  932 (1082)
Q Consensus       858 ~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg-----~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg  932 (1082)
                      .+|+....+. -..-+..+.|||....+++-+..|     .-|+|-+++.......+.+...     ...+..=-|+|||
T Consensus       176 ~tG~~~~v~~-~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~-----~e~~gHEfw~~DG  249 (386)
T PF14583_consen  176 KTGERKVVFE-DTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRME-----GESVGHEFWVPDG  249 (386)
T ss_dssp             TT--EEEEEE-ESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---T-----TEEEEEEEE-TTS
T ss_pred             CCCceeEEEe-cCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCC-----CcccccccccCCC
Confidence            6776544443 345567789999776666554433     2377877653322222222111     1345666799999


Q ss_pred             cEEEE-Ee-----cCeEEEEEccCcceeeeeccCCCCcceeEEEEcCCCceEEEeecCC----------------cEEEE
Q 001415          933 IHFLV-VH-----ETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDA----------------TVCVF  990 (1082)
Q Consensus       933 ~~l~~-~~-----d~~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~dg~~l~t~s~dg----------------~v~vw  990 (1082)
                      ..|.. +.     +..|.-+|+.+++......    ...-..+..++||++++-=+.|.                -|+++
T Consensus       250 ~~i~y~~~~~~~~~~~i~~~d~~t~~~~~~~~----~p~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~  325 (386)
T PF14583_consen  250 STIWYDSYTPGGQDFWIAGYDPDTGERRRLME----MPWCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLF  325 (386)
T ss_dssp             S-EEEEEEETTT--EEEEEE-TTT--EEEEEE----E-SEEEEEE-TTSSEEEEEE-------------------EEEEE
T ss_pred             CEEEEEeecCCCCceEEEeeCCCCCCceEEEe----CCceeeeEEcCCCCEEEecCCCCCccccccccceecCCcEEEEe
Confidence            98887 32     3357777888876543222    22445667789999887544432                46678


Q ss_pred             ecCCceeeeeeCC-Ceec-CCCCCCCCceeeEEEEeCCCCCeEEEEecCCcEEEEccCC
Q 001415          991 SAANLKLRCRINP-SAYL-PAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLE 1047 (1082)
Q Consensus       991 d~~~~~~~~~~~~-~~~~-~~gh~~~~v~~~~~~~~~~d~~~l~s~~~dg~v~vW~~~~ 1047 (1082)
                      ++..+........ ..+. ..|+ .. +.--...|+|++...|.++...|...|+-++-
T Consensus       326 ~~~~~~~~~l~~h~~sw~v~~~~-~q-~~hPhp~FSPDgk~VlF~Sd~~G~~~vY~v~i  382 (386)
T PF14583_consen  326 DVEAGRFRKLARHDTSWKVLDGD-RQ-VTHPHPSFSPDGKWVLFRSDMEGPPAVYLVEI  382 (386)
T ss_dssp             ETTTTEEEEEEE-------BTTB-SS-TT----EE-TTSSEEEEEE-TTSS-EEEEEE-
T ss_pred             ccccCceeeeeeccCcceeecCC-Cc-cCCCCCccCCCCCEEEEECCCCCCccEEEEeC
Confidence            8887765422110 1111 1111 11 11124899995434466777778777765543

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=97.76  E-value=0.0017  Score=72.30  Aligned_cols=175  Identities=14%  Similarity=0.088  Sum_probs=108.1

Q ss_pred             eEEEEecCCCeeEEEECCCCCCeeEEEEecCCCcEEEEEe---CC-CcEEEEecccceeeeeecccccCEEEEEEeCCCC
Q 001415          808 KISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGM---DD-SSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALN  883 (1082)
Q Consensus       808 ~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasg~---~d-g~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~  883 (1082)
                      .+.+-|.+ +.....+......+..-+|+| ++..++...   .. ..++++++.+++....+. -.+.-...+|||||+
T Consensus       174 ~l~~~D~d-g~~~~~l~~~~~~~~~p~ws~-~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-~~g~~~~P~fspDG~  250 (425)
T COG0823         174 ELALGDYD-GYNQQKLTDSGSLILTPAWSP-DGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-FNGNNGAPAFSPDGS  250 (425)
T ss_pred             eEEEEccC-CcceeEecccCcceeccccCc-CCCceEEEEEecCCCceEEEEeccCCccceeec-cCCccCCccCCCCCC
Confidence            34455544 555555555556677788999 666554332   22 359999999886544433 222234578999999


Q ss_pred             EEEEE-eCCCc--EEEEEcCCcccccceeeeccCCCCCCCCCCcEEEEcCCCcEEEEEecC----eEEEEEccCcceeee
Q 001415          884 VLVSS-GADSQ--LCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHET----QLAIFETTKLECVKQ  956 (1082)
Q Consensus       884 ~l~s~-s~Dg~--i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~~d~----~i~iwd~~~~~~~~~  956 (1082)
                      .|+.+ ..||.  |.+.|+.++..  .+ +....+      .-..-.|+|||++++..+|.    .|.+++.+.+...+.
T Consensus       251 ~l~f~~~rdg~~~iy~~dl~~~~~--~~-Lt~~~g------i~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~ri  321 (425)
T COG0823         251 KLAFSSSRDGSPDIYLMDLDGKNL--PR-LTNGFG------INTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRL  321 (425)
T ss_pred             EEEEEECCCCCccEEEEcCCCCcc--ee-cccCCc------cccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeEe
Confidence            87755 45665  55556666442  12 222222      22467899999999995543    477778776665332


Q ss_pred             eccCCCCcceeEEEEcCCCceEEEeecC-Cc--EEEEecCCcee
Q 001415          957 WVPRESSAPITHATFSCDSQLVYACFLD-AT--VCVFSAANLKL  997 (1082)
Q Consensus       957 ~~~~~h~~~i~~l~~s~dg~~l~t~s~d-g~--v~vwd~~~~~~  997 (1082)
                      .. .+..  -..-.|||||++|+..+.. |.  |.+.|+.++..
T Consensus       322 T~-~~~~--~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~  362 (425)
T COG0823         322 TF-SGGG--NSNPVWSPDGDKIVFESSSGGQWDIDKNDLASGGK  362 (425)
T ss_pred             ec-cCCC--CcCccCCCCCCEEEEEeccCCceeeEEeccCCCCc
Confidence            22 1211  1267899999999988753 44  77777776664

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=97.76  E-value=0.0037  Score=68.89  Aligned_cols=273  Identities=11%  Similarity=0.140  Sum_probs=136.9

Q ss_pred             ceeEEEEccCCceeeecccCCeEEEeeccccccCC-CCCccc-----------ccCccccCC--------CCcceeeccc
Q 001415          721 KISRLIFTNSGNAILALASNAIHLLWKWQRTERNS-SGKATA-----------SVAPQLWQP--------PSGIMMTNDV  780 (1082)
Q Consensus       721 ~i~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~-~~~~~~-----------~~~~~~~~~--------~~~~~~~~~~  780 (1082)
                      .|..+.|.++...++++...|.+.+|.+....... ......           ...-.+.|.        +.|......+
T Consensus         3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~   82 (395)
T PF08596_consen    3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL   82 (395)
T ss_dssp             -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred             eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence            47889999998889999999999999988765443 110000           001111121        1232222222


Q ss_pred             CCCCCCCCccEEEeecCCCeEEEee-CCeEEEEecCCCeeEEEE--CC------CCCCeeEEEEec----CCC---cEEE
Q 001415          781 TDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATF--MP------PPPAATFLAFHP----QDN---NIIA  844 (1082)
Q Consensus       781 ~~~~~~~~i~~l~~s~dg~~l~~~s-dg~i~iwd~~~~~~~~~~--~~------~~~~v~~l~~sp----~~~---~~la  844 (1082)
                      ..  ..++|++++.|.= -++|.|. +|.+.|.|++....+..-  ..      ....++++.|+-    +|+   -.++
T Consensus        83 ~~--~~g~vtal~~S~i-GFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~  159 (395)
T PF08596_consen   83 DA--KQGPVTALKNSDI-GFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLL  159 (395)
T ss_dssp             -----S-SEEEEEE-BT-SEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEE
T ss_pred             ec--cCCcEeEEecCCC-cEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEE
Confidence            22  4788999999744 4888887 699999999877776552  12      233578888862    133   4788


Q ss_pred             EEeCCCcEEEEeccc---ceeeeeec----ccccCEEEEEEeCCCCEEEEEeCCCcEEEEEcCCccccccee--e-eccC
Q 001415          845 IGMDDSSIQIYNVRV---DEVKSKLK----GHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRF--L-QIPT  914 (1082)
Q Consensus       845 sg~~dg~v~iwd~~~---~~~~~~l~----~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~--~-~~~~  914 (1082)
                      +|+..|.+.+|.+.-   +.....+.    .+.++|..|                  ...+.++++......  + ....
T Consensus       160 vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I------------------~~i~~~~G~~a~At~~~~~~l~~  221 (395)
T PF08596_consen  160 VGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSI------------------IPINADTGESALATISAMQGLSK  221 (395)
T ss_dssp             EEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EE------------------EEEETTT--B-B-BHHHHHGGGG
T ss_pred             EEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEE------------------EEEECCCCCcccCchhHhhcccc
Confidence            899999999998752   11111111    122222222                  222333332211000  0 0000


Q ss_pred             CCCCCCCCCcEEEEcCCCcEEEEEecCeEEEEEccCcceeeeeccCCCCcceeEEEEc-----CCCceEEEeecCCcEEE
Q 001415          915 GRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPRESSAPITHATFS-----CDSQLVYACFLDATVCV  989 (1082)
Q Consensus       915 ~~~~~~~~v~~~~fspdg~~l~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s-----~dg~~l~t~s~dg~v~v  989 (1082)
                      +.             +...+++++++..++++...+.+......  ........+++-     ..+..|++-..+|.|++
T Consensus       222 g~-------------~i~g~vVvvSe~~irv~~~~~~k~~~K~~--~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i  286 (395)
T PF08596_consen  222 GI-------------SIPGYVVVVSESDIRVFKPPKSKGAHKSF--DDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRI  286 (395)
T ss_dssp             T-----------------EEEEEE-SSEEEEE-TT---EEEEE---SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEE
T ss_pred             CC-------------CcCcEEEEEcccceEEEeCCCCcccceee--ccccccceEEEEeecccCCceEEEEEECCCcEEE
Confidence            00             11235667889999999988877766544  222233444552     35667888889999999


Q ss_pred             EecCCceeeeeeCCCeecCCCCCCCCceeeEEEEeCCCCCeEEEEec
Q 001415          990 FSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLS 1036 (1082)
Q Consensus       990 wd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~~~~~~~d~~~l~s~~~ 1036 (1082)
                      |.+...+.+..+......      +.-......+++ +|+.++-.+.
T Consensus       287 ~SLP~Lkei~~~~l~~~~------d~~~~~~ssis~-~Gdi~~~~gp  326 (395)
T PF08596_consen  287 YSLPSLKEIKSVSLPPPL------DSRRLSSSSISR-NGDIFYWTGP  326 (395)
T ss_dssp             EETTT--EEEEEE-SS---------HHHHTT-EE-T-TS-EEEE-SS
T ss_pred             EECCCchHhhcccCCCcc------ccccccccEECC-CCCEEEEeCc
Confidence            999999999877632110      001112345566 4776665543

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=97.74  E-value=0.15  Score=59.36  Aligned_cols=61  Identities=13%  Similarity=0.115  Sum_probs=42.9

Q ss_pred             CeEEEEecCCCeeEEEECCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEecccceeeeeeccc
Q 001415          807 GKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGH  869 (1082)
Q Consensus       807 g~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h  869 (1082)
                      |.|.-+|+.+++..................  .+.+++.++.+|.++.+|..+|+.+-..+-.
T Consensus       441 g~l~AiD~~tGk~~W~~~~~~p~~~~~l~t--~g~lvf~g~~~G~l~a~D~~TGe~lw~~~~g  501 (527)
T TIGR03075       441 GSLIAWDPITGKIVWEHKEDFPLWGGVLAT--AGDLVFYGTLEGYFKAFDAKTGEELWKFKTG  501 (527)
T ss_pred             eeEEEEeCCCCceeeEecCCCCCCCcceEE--CCcEEEEECCCCeEEEEECCCCCEeEEEeCC
Confidence            458888999988887765333222222222  3447777888999999999999998777643

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=97.72  E-value=0.0098  Score=66.25  Aligned_cols=207  Identities=13%  Similarity=0.136  Sum_probs=145.0

Q ss_pred             CccEEEeecCCCeEEEee--CCeEEEEecCCCeeEEEECCCCCCeeEEEEecCCCcEEEEEeC---CCcEEEEeccccee
Q 001415          788 AVPCFALSKNDSYVMSAS--GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMD---DSSIQIYNVRVDEV  862 (1082)
Q Consensus       788 ~i~~l~~s~dg~~l~~~s--dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasg~~---dg~v~iwd~~~~~~  862 (1082)
                      ....+++++++..+....  ++.|.+.|..+.+......... ....++++| +++.+.++..   ++.+.+.|..+++.
T Consensus        75 ~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~-~P~~~~~~~-~~~~vYV~n~~~~~~~vsvid~~t~~~  152 (381)
T COG3391          75 YPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGL-GPVGLAVDP-DGKYVYVANAGNGNNTVSVIDAATNKV  152 (381)
T ss_pred             cccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeecc-CCceEEECC-CCCEEEEEecccCCceEEEEeCCCCeE
Confidence            345678888888555443  5889999988777766655333 678899999 5544444443   68999999999888


Q ss_pred             eeeecccccCEEEEEEeCCCCEEEEEe-CCCcEEEEEcCCcccccceeeeccCCCCCCCCCCcEEEEcCCCcEEEEEec-
Q 001415          863 KSKLKGHSKRITGLAFSHALNVLVSSG-ADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHE-  940 (1082)
Q Consensus       863 ~~~l~~h~~~V~~l~~s~d~~~l~s~s-~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~~d-  940 (1082)
                      +.....-..+ ..++++|+|+.+..+. .+++|.+.|.......+    ...............+.++|+|.++.+..+ 
T Consensus       153 ~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~----~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~  227 (381)
T COG3391         153 TATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVR----GSVGSLVGVGTGPAGIAVDPDGNRVYVANDG  227 (381)
T ss_pred             EEEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceec----cccccccccCCCCceEEECCCCCEEEEEecc
Confidence            8775544445 8899999999766555 78899999977743321    000000111134578999999997776322 


Q ss_pred             ---CeEEEEEccCcceeeeeccCCCCcceeEEEEcCCCceEEEeecC-CcEEEEecCCceeeeeeC
Q 001415          941 ---TQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLD-ATVCVFSAANLKLRCRIN 1002 (1082)
Q Consensus       941 ---~~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~dg~~l~t~s~d-g~v~vwd~~~~~~~~~~~ 1002 (1082)
                         +.+...|..++.....-...+-. ....+.++|+|+++.+.... +.+.+-|..+......+.
T Consensus       228 ~~~~~v~~id~~~~~v~~~~~~~~~~-~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~~~  292 (381)
T COG3391         228 SGSNNVLKIDTATGNVTATDLPVGSG-APRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVKTGP  292 (381)
T ss_pred             CCCceEEEEeCCCceEEEeccccccC-CCCceeECCCCCEEEEEecCCCeEEEEeCCCCceeeeec
Confidence               47888888888776652222222 56678999999999888544 889999999988887655

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=97.62  E-value=2.1e-05  Score=85.55  Aligned_cols=204  Identities=15%  Similarity=0.244  Sum_probs=127.7

Q ss_pred             CCCCceEEEEecCCC-eEEEEEcCCCcEEEEEccccceeeeeceeeeccCCCCcccccccccCCCCceeEEEEec-CCCe
Q 001415          357 QGSSPMSMDFHPVQQ-TLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP-DGSL  434 (1082)
Q Consensus       357 h~~~v~~~~~spdg~-~llasgs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~sp-dg~~  434 (1082)
                      ....+.|++++-+.+ -++++|..+|.|.+-.+....--                 ...+..+|....++++|++ |..+
T Consensus        55 dtqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdS-----------------s~E~tp~~ar~Ct~lAwneLDtn~  117 (783)
T KOG1008|consen   55 DTQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDS-----------------SAEVTPGYARPCTSLAWNELDTNH  117 (783)
T ss_pred             cCCCceeehhhcCCchhhhhhccccCceEEeecCCcccc-----------------cceecccccccccccccccccHHH
Confidence            345677777765544 58999999999998877542211                 1224678889999999999 8888


Q ss_pred             EEEEe----CCCeEEEEEccCCce--eeEEEEeec-cccCeeEEEecCCCCceEEEEEeCCCcEEEEEccCCce-eEEee
Q 001415          435 FGVAY----SRHIVQIYSYHGGDE--VRQHLEIDA-HVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAK-QYIFE  506 (1082)
Q Consensus       435 las~~----~d~~v~iwd~~~~~~--~~~~~~~~~-h~~~V~~l~fs~dg~~~~l~s~s~d~~i~vwd~~~~~~-~~~~~  506 (1082)
                      ||.|-    .|..+.|||+.++-.  .... .+.+ -.....+++|-.+.+  ++.+|...+.+.++|++.... ...+ 
T Consensus       118 LAagldkhrnds~~~Iwdi~s~ltvPke~~-~fs~~~l~gqns~cwlrd~k--lvlaGm~sr~~~ifdlRqs~~~~~sv-  193 (783)
T KOG1008|consen  118 LAAGLDKHRNDSSLKIWDINSLLTVPKESP-LFSSSTLDGQNSVCWLRDTK--LVLAGMTSRSVHIFDLRQSLDSVSSV-  193 (783)
T ss_pred             HHhhhhhhcccCCccceecccccCCCcccc-ccccccccCccccccccCcc--hhhcccccchhhhhhhhhhhhhhhhh-
Confidence            98874    356799999988721  1111 1222 344666889987777  788898888999999873321 1122 


Q ss_pred             cCCcCeEEEeeeecCCceEEEEecCCCcEEEEe-cCCCCceeeecCC-----CCceEEEEEccCCCeeeecccccceeEE
Q 001415          507 GHEAPVYSVCPHHKENIQFIFSTALDGKIKAWL-YDNLGSRVDYEAP-----GRWCTTMAYSADGTRTYQGFRKRSLGVV  580 (1082)
Q Consensus       507 ~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd-~~~~~~~~~~~~~-----~~~v~~~~~s~d~~~~~~~~~~~~i~~~  580 (1082)
                       .+..+..+.+.|-. +.++++-. ||.|.+|| ....+.......+     ...+..++|.|...              
T Consensus       194 -nTk~vqG~tVdp~~-~nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrt--------------  256 (783)
T KOG1008|consen  194 -NTKYVQGITVDPFS-PNYFCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRT--------------  256 (783)
T ss_pred             -hhhhcccceecCCC-CCceeccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCc--------------
Confidence             12234444444422 24666655 99999999 4443332211111     22366666666543              


Q ss_pred             EecCCCCEEEEEe-CCCeEEEEECC
Q 001415          581 QFDTTKNRFLAAG-DDFSIKFWDMD  604 (1082)
Q Consensus       581 ~~~~~~~~l~~~~-~dg~i~iwd~~  604 (1082)
                            ..+++.. ..++|+++|+.
T Consensus       257 ------glla~l~RdS~tIrlydi~  275 (783)
T KOG1008|consen  257 ------GLLAVLSRDSITIRLYDIC  275 (783)
T ss_pred             ------chhhhhccCcceEEEeccc
Confidence                  1344443 56788988875

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=97.60  E-value=0.11  Score=60.32  Aligned_cols=149  Identities=12%  Similarity=0.065  Sum_probs=85.6

Q ss_pred             cEEEEecccceeeeeecccccCEE---------EEEEeCCCC---EEEEEeCCCcEEEEEcCCcccccceee-e--cc--
Q 001415          851 SIQIYNVRVDEVKSKLKGHSKRIT---------GLAFSHALN---VLVSSGADSQLCVWSSDGWEKQKNRFL-Q--IP--  913 (1082)
Q Consensus       851 ~v~iwd~~~~~~~~~l~~h~~~V~---------~l~~s~d~~---~l~s~s~Dg~i~vwd~~~~~~~~~~~~-~--~~--  913 (1082)
                      .|.-.|+++|+..-.++.....++         -+.+..+|+   .++.++.+|.+.+.|-.+++....... .  ..  
T Consensus       272 s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i~~~~~~~~~~w~~  351 (527)
T TIGR03075       272 SIVARDPDTGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLLSAEPFVDTVNWAT  351 (527)
T ss_pred             eEEEEccccCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCceeccccccCCccccc
Confidence            566678888887766553222111         122334676   788999999999999999876321000 0  00  


Q ss_pred             --C---CCC--------------------C-CCC--CCcEEEEcCCCcEEEE-Eec------------------------
Q 001415          914 --T---GRT--------------------P-TAQ--SDTRVQFHQDQIHFLV-VHE------------------------  940 (1082)
Q Consensus       914 --~---~~~--------------------~-~~~--~v~~~~fspdg~~l~~-~~d------------------------  940 (1082)
                        .   +..                    + ..+  .=..++++|+..++.+ ..+                        
T Consensus       352 ~~~~~~g~p~~~~~~~~~~~~~~~~~~~~Pg~~Gg~~W~~~A~Dp~~g~~yvp~~~~~~~~~~~~~~~~~g~~~~~~~~~  431 (527)
T TIGR03075       352 GVDLKTGRPIEVPEARSADGKKGKPVGVCPGFLGGKNWQPMAYSPKTGLFYVPANEVCMDYEPEKVSYKKGAAYLGAGLT  431 (527)
T ss_pred             ccCCCCCCCccChhhCcCCCCCCCeeEECCCCcCCCCCCCceECCCCCEEEEecccccccccccccccCCCCceeccccc
Confidence              0   000                    0 000  0022566666555544 111                        


Q ss_pred             ---------CeEEEEEccCcceeeeeccCCCCcceeEEEEcCCCceEEEeecCCcEEEEecCCceeeeeeC
Q 001415          941 ---------TQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRIN 1002 (1082)
Q Consensus       941 ---------~~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~dg~~l~t~s~dg~v~vwd~~~~~~~~~~~ 1002 (1082)
                               +.|.-+|+.+|+..-......  ....+. +.-.|..++.++.||.++.+|..+|+.+-.++
T Consensus       432 ~~p~~~~~~g~l~AiD~~tGk~~W~~~~~~--p~~~~~-l~t~g~lvf~g~~~G~l~a~D~~TGe~lw~~~  499 (527)
T TIGR03075       432 IKPPPDDHMGSLIAWDPITGKIVWEHKEDF--PLWGGV-LATAGDLVFYGTLEGYFKAFDAKTGEELWKFK  499 (527)
T ss_pred             cCCCCCCCceeEEEEeCCCCceeeEecCCC--CCCCcc-eEECCcEEEEECCCCeEEEEECCCCCEeEEEe
Confidence                     347777888887765444211  111111 22255577778889999999999999998876

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.58  E-value=0.00054  Score=71.21  Aligned_cols=108  Identities=10%  Similarity=0.174  Sum_probs=88.2

Q ss_pred             HHHHHHHHHHHhhcChHHHHHHHHHhcCCCcc----------HHHHHHHhhccCHHHHHHHhccCc-cccCcccchhhHH
Q 001415            6 RELVFLILQFLDEEKFKETVHKLEQESGFFFN----------MKYFEDEVHNGNWDDVEKYLSGFT-KVDDNRYSMKIFF   74 (1082)
Q Consensus         6 ~~~~~li~q~L~~~g~~~s~~~L~~Esg~~~~----------~~~~~~~i~~g~w~~~~~~l~~~~-~~~~~~~~~~~~~   74 (1082)
                      +.|..+|..++..+|..+.+..|.+|+|...+          +..+-++|..|+-.-|++.+..-. .+.+ + ..++-|
T Consensus       117 ~~ln~ai~~h~~rqGm~dv~~~l~~Ea~~~~~~~~~~~~F~el~~Iv~~lke~Dl~~aLeWa~~~~~~L~~-~-~s~LE~  194 (394)
T KOG2817|consen  117 QVLNEAIVYHFYRQGMDDVGECLIKEAGLSEDESKSRTEFVELNQIVEALKERDLEPALEWAESNRQKLKE-K-SSSLEF  194 (394)
T ss_pred             HHHHHHHHHHHHHcCchHHHHHHHHHhcCCCcchhhhhhHHHHHHHHHHHHhccchhHHHHHHHhhhhhcc-c-cccHHH
Confidence            44689999999999999999999999998752          778999999999999999998752 1111 1 124889


Q ss_pred             HHHHHHHHHHHhcCCHH--HHHHHHHhccccccccCHHHHHHH
Q 001415           75 EIRKQKYLEALDKHDRA--KAVEILVKDLKVFSTFNEELFKEI  115 (1082)
Q Consensus        75 ~l~~~~~lell~~~~~~--~a~~~l~~~l~~~~~~~~~~~~~l  115 (1082)
                      .|.++.|++++..|...  +|+.+.|+.++||........+.+
T Consensus       195 ~Lh~l~fl~l~~~g~~~~~eAl~Yar~~~~~F~~~~~~eIQkl  237 (394)
T KOG2817|consen  195 KLHSLHFLSLIRGGKSDQREALRYARTHFAPFVADHLREIQKL  237 (394)
T ss_pred             HHHHHHHHHHHhcCCcCcHHHHHHHHHhcCccccchHHHHHHH
Confidence            99999999999999888  999999999999966554444433

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=97.54  E-value=0.0059  Score=71.93  Aligned_cols=149  Identities=13%  Similarity=0.142  Sum_probs=94.7

Q ss_pred             CceEEEEEeCCCcEEEEEccCCceeEEeecCCcC-eEEEeeeec---CCceEEEEecCCCcEEEEecCCCCceeee-cCC
Q 001415          478 KQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAP-VYSVCPHHK---ENIQFIFSTALDGKIKAWLYDNLGSRVDY-EAP  552 (1082)
Q Consensus       478 ~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~-v~~~~~~~~---~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-~~~  552 (1082)
                      +.++|........|+-.|++.|+.+..+..|... |..++-...   -+....+.|-.+..+..||.+-....... ..+
T Consensus       493 ~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k  572 (794)
T PF08553_consen  493 RNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSK  572 (794)
T ss_pred             cceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeecccc
Confidence            3334555556788999999999999999887754 666653211   01235677778899999999854321110 000


Q ss_pred             CCceEEEEEccCCCeeeecccccceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEEecCCCCCCcCeEEEcCCCCE
Q 001415          553 GRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCL  632 (1082)
Q Consensus       553 ~~~v~~~~~s~d~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~  632 (1082)
                             .+          .......|++-+.+| ++|+|+.+|.||+||--..+....+.+-+  .+|..+..+.||++
T Consensus       573 -------~Y----------~~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~~g~~AKT~lp~lG--~pI~~iDvt~DGkw  632 (794)
T PF08553_consen  573 -------QY----------SSKNNFSCFATTEDG-YIAVGSNKGDIRLYDRLGKRAKTALPGLG--DPIIGIDVTADGKW  632 (794)
T ss_pred             -------cc----------ccCCCceEEEecCCc-eEEEEeCCCcEEeecccchhhhhcCCCCC--CCeeEEEecCCCcE
Confidence                   00          112234444444444 69999999999999954333223333333  48999999999999


Q ss_pred             EEEEECCCcEEEEEe
Q 001415          633 LAVSTNDNGIKILAT  647 (1082)
Q Consensus       633 l~~~~~dg~i~iwd~  647 (1082)
                      |++.+. ..+.+++.
T Consensus       633 ilaTc~-tyLlLi~t  646 (794)
T PF08553_consen  633 ILATCK-TYLLLIDT  646 (794)
T ss_pred             EEEeec-ceEEEEEE
Confidence            987765 55666664

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.50  E-value=0.074  Score=60.67  Aligned_cols=248  Identities=15%  Similarity=0.137  Sum_probs=121.7

Q ss_pred             ceEEEEecCCCeEEEEEcCCCc----EEEEEccccceeeeeceeeeccCCCCcccccccccCCCCceeEEEEecCCCeEE
Q 001415          361 PMSMDFHPVQQTLLLVGTNVGD----IGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFG  436 (1082)
Q Consensus       361 v~~~~~spdg~~llasgs~dg~----i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la  436 (1082)
                      +..+++||||++++++-+..|.    |++.|+++|+.+.. .+                 ..  ..-..++|++|++.|.
T Consensus       126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d-~i-----------------~~--~~~~~~~W~~d~~~~~  185 (414)
T PF02897_consen  126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPD-GI-----------------EN--PKFSSVSWSDDGKGFF  185 (414)
T ss_dssp             EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEE-EE-----------------EE--EESEEEEECTTSSEEE
T ss_pred             eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCC-cc-----------------cc--cccceEEEeCCCCEEE
Confidence            4467899999986666555554    99999999977653 11                 11  1122399999999887


Q ss_pred             EEeCCC-----------eEEEEEccCCceeeEEEEeeccccC--eeEEEecCCCCceEEEEEeCC---CcEEEEEccCC-
Q 001415          437 VAYSRH-----------IVQIYSYHGGDEVRQHLEIDAHVGG--VNDIAFSHPNKQLCVITCGDD---KTIKVWDATNG-  499 (1082)
Q Consensus       437 s~~~d~-----------~v~iwd~~~~~~~~~~~~~~~h~~~--V~~l~fs~dg~~~~l~s~s~d---~~i~vwd~~~~-  499 (1082)
                      ....+.           .|..|.+.+...-.. ..+.+....  ...+..++|++. +++.....   ..+.+-|+..+ 
T Consensus       186 y~~~~~~~~~~~~~~~~~v~~~~~gt~~~~d~-lvfe~~~~~~~~~~~~~s~d~~~-l~i~~~~~~~~s~v~~~d~~~~~  263 (414)
T PF02897_consen  186 YTRFDEDQRTSDSGYPRQVYRHKLGTPQSEDE-LVFEEPDEPFWFVSVSRSKDGRY-LFISSSSGTSESEVYLLDLDDGG  263 (414)
T ss_dssp             EEECSTTTSS-CCGCCEEEEEEETTS-GGG-E-EEEC-TTCTTSEEEEEE-TTSSE-EEEEEESSSSEEEEEEEECCCTT
T ss_pred             EEEeCcccccccCCCCcEEEEEECCCChHhCe-eEEeecCCCcEEEEEEecCcccE-EEEEEEccccCCeEEEEeccccC
Confidence            665332           377777776643211 134443333  568889999996 33333333   34777787764 


Q ss_pred             ---ceeEEeecCCcCeEEEeeeecCCceEEEEecC---CCcEEEEecCCCCceeeecCCCCceEEEEEccCCCeeeeccc
Q 001415          500 ---AKQYIFEGHEAPVYSVCPHHKENIQFIFSTAL---DGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFR  573 (1082)
Q Consensus       500 ---~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~---dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~  573 (1082)
                         .....+......+....-+. ++ .+++....   .+.|...++.......        ...+.+.++..       
T Consensus       264 ~~~~~~~~l~~~~~~~~~~v~~~-~~-~~yi~Tn~~a~~~~l~~~~l~~~~~~~--------~~~~l~~~~~~-------  326 (414)
T PF02897_consen  264 SPDAKPKLLSPREDGVEYYVDHH-GD-RLYILTNDDAPNGRLVAVDLADPSPAE--------WWTVLIPEDED-------  326 (414)
T ss_dssp             TSS-SEEEEEESSSS-EEEEEEE-TT-EEEEEE-TT-TT-EEEEEETTSTSGGG--------EEEEEE--SSS-------
T ss_pred             CCcCCcEEEeCCCCceEEEEEcc-CC-EEEEeeCCCCCCcEEEEeccccccccc--------ceeEEcCCCCc-------
Confidence               23333333333333322222 22 33333322   3455555555443200        00011111110       


Q ss_pred             ccceeEEEecCCCCEEEEEe-CC--CeEEEEECCCcceEEEEecCCCCCCcCeEEEcCCCCEEEEEE----CCCcEEEEE
Q 001415          574 KRSLGVVQFDTTKNRFLAAG-DD--FSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVST----NDNGIKILA  646 (1082)
Q Consensus       574 ~~~i~~~~~~~~~~~l~~~~-~d--g~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~----~dg~i~iwd  646 (1082)
                       ..+..+  ...+++|+... .+  ..|+++++..+.....+..... ..|..+...+++..+....    .-+++..||
T Consensus       327 -~~l~~~--~~~~~~Lvl~~~~~~~~~l~v~~~~~~~~~~~~~~p~~-g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d  402 (414)
T PF02897_consen  327 -VSLEDV--SLFKDYLVLSYRENGSSRLRVYDLDDGKESREIPLPEA-GSVSGVSGDFDSDELRFSYSSFTTPPTVYRYD  402 (414)
T ss_dssp             -EEEEEE--EEETTEEEEEEEETTEEEEEEEETT-TEEEEEEESSSS-SEEEEEES-TT-SEEEEEEEETTEEEEEEEEE
T ss_pred             -eeEEEE--EEECCEEEEEEEECCccEEEEEECCCCcEEeeecCCcc-eEEeccCCCCCCCEEEEEEeCCCCCCEEEEEE
Confidence             011112  22233454433 33  4588899884444444443322 1344455455555444332    135677777


Q ss_pred             ecCCc
Q 001415          647 TSDGI  651 (1082)
Q Consensus       647 ~~~~~  651 (1082)
                      +.++.
T Consensus       403 ~~t~~  407 (414)
T PF02897_consen  403 LATGE  407 (414)
T ss_dssp             TTTTC
T ss_pred             CCCCC
Confidence            77763

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.47  E-value=0.056  Score=53.88  Aligned_cols=236  Identities=15%  Similarity=0.112  Sum_probs=139.9

Q ss_pred             ccEEEeecCCCe-EEEee-CCe-EEEEecCCCeeEEEECCCCCC--eeEEEEecCCCcEEEEEeCC-----CcEEEEecc
Q 001415          789 VPCFALSKNDSY-VMSAS-GGK-ISLFNMMTFKTMATFMPPPPA--ATFLAFHPQDNNIIAIGMDD-----SSIQIYNVR  858 (1082)
Q Consensus       789 i~~l~~s~dg~~-l~~~s-dg~-i~iwd~~~~~~~~~~~~~~~~--v~~l~~sp~~~~~lasg~~d-----g~v~iwd~~  858 (1082)
                      -..++|+|--.. ++.+- -|+ ..++|....+...++....+.  .-.=.||| ||.+|...-.|     |.|-|||..
T Consensus        70 ~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~-dG~~LYATEndfd~~rGViGvYd~r  148 (366)
T COG3490          70 GHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSP-DGRLLYATENDFDPNRGVIGVYDAR  148 (366)
T ss_pred             cCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCC-CCcEEEeecCCCCCCCceEEEEecc
Confidence            345777776553 44444 254 788999888777766544332  23347999 88888765433     689999988


Q ss_pred             cc-eeeeeecccccCEEEEEEeCCCCEEEEEeCC------------------CcEEEEEcCCcccccceeeeccCCCCCC
Q 001415          859 VD-EVKSKLKGHSKRITGLAFSHALNVLVSSGAD------------------SQLCVWSSDGWEKQKNRFLQIPTGRTPT  919 (1082)
Q Consensus       859 ~~-~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~D------------------g~i~vwd~~~~~~~~~~~~~~~~~~~~~  919 (1082)
                      .+ +.+.++..|.-.-..+.+.+||+.|+.+...                  -.+.+-|..+++......+.....+   
T Consensus       149 ~~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~---  225 (366)
T COG3490         149 EGFQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQ---  225 (366)
T ss_pred             cccceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCchhhhh---
Confidence            64 5677888888777889999999999887431                  1233334333333322222211111   


Q ss_pred             CCCCcEEEEcCCCcEEEEEe-cC-----eEEEEEccCcceeeeeccCC-----CCcceeEEEEcCCCceEEEee-cCCcE
Q 001415          920 AQSDTRVQFHQDQIHFLVVH-ET-----QLAIFETTKLECVKQWVPRE-----SSAPITHATFSCDSQLVYACF-LDATV  987 (1082)
Q Consensus       920 ~~~v~~~~fspdg~~l~~~~-d~-----~i~iwd~~~~~~~~~~~~~~-----h~~~i~~l~~s~dg~~l~t~s-~dg~v  987 (1082)
                       .++..++.-+||+.++.+. .|     --.+=....++.+.-+....     -..-|-+|+...+..+++..+ ..+..
T Consensus       226 -lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~  304 (366)
T COG3490         226 -LSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNRA  304 (366)
T ss_pred             -cceeeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCeE
Confidence             4578888888988877641 11     11122223344333332211     133567788877666666655 45567


Q ss_pred             EEEecCCceeeeeeCCCeecCCCCCCCCceeeEEEEeCCCCCeEEEEecCCcEEEEc
Q 001415          988 CVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFE 1044 (1082)
Q Consensus       988 ~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~~~~~~~d~~~l~s~~~dg~v~vW~ 1044 (1082)
                      .+||..+|.++....    ++..      .  .+.-   +..-+++.+.+|.+.++.
T Consensus       305 vi~da~tG~vv~~a~----l~da------a--Gva~---~~~gf~vssg~G~~~~~s  346 (366)
T COG3490         305 VIWDAATGAVVSEAA----LPDA------A--GVAA---AKGGFAVSSGQGRIIFYS  346 (366)
T ss_pred             EEEEcCCCcEEeccc----cccc------c--ccee---ccCceEEecCCceEEecc
Confidence            899999999885443    2222      1  1221   133466667788888773

>PRK13616 lipoprotein LpqB; Provisional

Probab=97.45  E-value=0.0068  Score=70.63  Aligned_cols=189  Identities=12%  Similarity=0.060  Sum_probs=105.2

Q ss_pred             CCccEEEeecCCCeEEEee-------CC--eEEEEecCCCeeEEEECCCCCCeeEEEEecCCCcEEEEEeCC--------
Q 001415          787 EAVPCFALSKNDSYVMSAS-------GG--KISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDD--------  849 (1082)
Q Consensus       787 ~~i~~l~~s~dg~~l~~~s-------dg--~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasg~~d--------  849 (1082)
                      ..+.+.++||||+.++...       +.  .|.+++... .. ..+.. ....+.-.|+| ++..|++....        
T Consensus       350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg-~~-~~lt~-g~~~t~PsWsp-DG~~lw~v~dg~~~~~v~~  425 (591)
T PRK13616        350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGG-VA-VQVLE-GHSLTRPSWSL-DADAVWVVVDGNTVVRVIR  425 (591)
T ss_pred             cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCC-cc-eeeec-CCCCCCceECC-CCCceEEEecCcceEEEec
Confidence            4678899999999887664       32  466666532 22 33322 22488899999 76666655422        


Q ss_pred             ----CcEEEEecccceeeeeecccccCEEEEEEeCCCCEEEEEeCCCcEEE---EEcCCcccccceeeeccCCCCCCCCC
Q 001415          850 ----SSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCV---WSSDGWEKQKNRFLQIPTGRTPTAQS  922 (1082)
Q Consensus       850 ----g~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~v---wd~~~~~~~~~~~~~~~~~~~~~~~~  922 (1082)
                          +.+++.++..++...   ...+.|..+.|||||..++... ++.|.+   -....++...........+..   ..
T Consensus       426 ~~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~---~~  498 (591)
T PRK13616        426 DPATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVGPGLG---DT  498 (591)
T ss_pred             cCCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEeecccC---Cc
Confidence                334444554443322   2356799999999999988876 477776   333333311111111111111   23


Q ss_pred             CcEEEEcCCCcEEEEEecCeEEEEEccC-cceeeeeccCCCCcceeEEEEcCCCceEEEeecCCcEE
Q 001415          923 DTRVQFHQDQIHFLVVHETQLAIFETTK-LECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVC  988 (1082)
Q Consensus       923 v~~~~fspdg~~l~~~~d~~i~iwd~~~-~~~~~~~~~~~h~~~i~~l~~s~dg~~l~t~s~dg~v~  988 (1082)
                      +..+.|.+++.+++...++.-.+|.+.- |.....+.......++.+|+-+++  .|+.+..+|.+.
T Consensus       499 ~~~l~W~~~~~L~V~~~~~~~~v~~v~vDG~~~~~~~~~n~~~~v~~vaa~~~--~iyv~~~~g~~~  563 (591)
T PRK13616        499 AVSLDWRTGDSLVVGRSDPEHPVWYVNLDGSNSDALPSRNLSAPVVAVAASPS--TVYVTDARAVLQ  563 (591)
T ss_pred             cccceEecCCEEEEEecCCCCceEEEecCCccccccCCCCccCceEEEecCCc--eEEEEcCCceEE
Confidence            5789999999976554444444454332 222222222223566777777763  355555566433

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=97.41  E-value=0.052  Score=57.60  Aligned_cols=232  Identities=13%  Similarity=0.059  Sum_probs=134.8

Q ss_pred             EEEecCCCeEEEEEcCCCcEEEEEccccceeeeeceeeeccCCCCcccccccccCCCCceeEEEEecCCCeEEEEeCCCe
Q 001415          364 MDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHI  443 (1082)
Q Consensus       364 ~~~spdg~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d~~  443 (1082)
                      ..|.|++..|+.+--..+.|.-|+..+++...                    + .+.+.+.++..-.++..|+++.  ..
T Consensus        30 P~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~~--------------------~-~~p~~~~~~~~~d~~g~Lv~~~--~g   86 (307)
T COG3386          30 PVWDPDRGALLWVDILGGRIHRLDPETGKKRV--------------------F-PSPGGFSSGALIDAGGRLIACE--HG   86 (307)
T ss_pred             ccCcCCCCEEEEEeCCCCeEEEecCCcCceEE--------------------E-ECCCCcccceeecCCCeEEEEc--cc
Confidence            34778888778888888999999998775432                    1 1223445555545555555553  23


Q ss_pred             EEEEEccCCceeeEEEEee-cc-ccCeeEEEecCCCCceEEEEEeC------C---CcEEEEEcc-CCceeEEeecCCcC
Q 001415          444 VQIYSYHGGDEVRQHLEID-AH-VGGVNDIAFSHPNKQLCVITCGD------D---KTIKVWDAT-NGAKQYIFEGHEAP  511 (1082)
Q Consensus       444 v~iwd~~~~~~~~~~~~~~-~h-~~~V~~l~fs~dg~~~~l~s~s~------d---~~i~vwd~~-~~~~~~~~~~h~~~  511 (1082)
                      +.+++.+++.......... +. ....+.+...|+|.  +.++...      .   ..-.||-+. .+..++.+..+-..
T Consensus        87 ~~~~~~~~~~~~t~~~~~~~~~~~~r~ND~~v~pdG~--~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~~~~~~  164 (307)
T COG3386          87 VRLLDPDTGGKITLLAEPEDGLPLNRPNDGVVDPDGR--IWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLDDDLTI  164 (307)
T ss_pred             cEEEeccCCceeEEeccccCCCCcCCCCceeEcCCCC--EEEeCCCccccCccccCCcceEEEEcCCCCEEEeecCcEEe
Confidence            6777776665433222221 22 23566888899998  3333222      0   112455555 57777777766666


Q ss_pred             eEEEeeeecCCceEEEEecCCCcEEEEecCCCCceeeecCCCCceEEEEEccCCCeeeecccccceeEEEecCCCCEEEE
Q 001415          512 VYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLA  591 (1082)
Q Consensus       512 v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~i~~~~~~~~~~~l~~  591 (1082)
                      -+.++|+|++. .+.++=+..+.|.-|+++.....    .... ..         ........+..-.++.+.+|.+.++
T Consensus       165 ~NGla~SpDg~-tly~aDT~~~~i~r~~~d~~~g~----~~~~-~~---------~~~~~~~~G~PDG~~vDadG~lw~~  229 (307)
T COG3386         165 PNGLAFSPDGK-TLYVADTPANRIHRYDLDPATGP----IGGR-RG---------FVDFDEEPGLPDGMAVDADGNLWVA  229 (307)
T ss_pred             cCceEECCCCC-EEEEEeCCCCeEEEEecCcccCc----cCCc-ce---------EEEccCCCCCCCceEEeCCCCEEEe
Confidence            78889987664 34444455577888877631000    0000 00         1111112223344677777777755


Q ss_pred             EeCCC-eEEEEECCCcceEEEEecCCCCCCcCeEEEc-CCCCEEEEEEC
Q 001415          592 AGDDF-SIKFWDMDSVQLLTSIDADGGLPASPRIRFN-KDGCLLAVSTN  638 (1082)
Q Consensus       592 ~~~dg-~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s-~dg~~l~~~~~  638 (1082)
                      +..+| .|.+|+.. |+++..+.....  .+++++|- ++.+.|++.+.
T Consensus       230 a~~~g~~v~~~~pd-G~l~~~i~lP~~--~~t~~~FgG~~~~~L~iTs~  275 (307)
T COG3386         230 AVWGGGRVVRFNPD-GKLLGEIKLPVK--RPTNPAFGGPDLNTLYITSA  275 (307)
T ss_pred             cccCCceEEEECCC-CcEEEEEECCCC--CCccceEeCCCcCEEEEEec
Confidence            44444 89999988 999998887643  57778885 45566665544

>PRK13616 lipoprotein LpqB; Provisional

Probab=97.38  E-value=0.024  Score=66.16  Aligned_cols=149  Identities=13%  Similarity=0.084  Sum_probs=87.8

Q ss_pred             CCeeEEEEecCCCcEEEEEe------CCC--cEEEEecccceeeeeecccccCEEEEEEeCCCCEEEEEeCCCc-EEEE-
Q 001415          828 PAATFLAFHPQDNNIIAIGM------DDS--SIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQ-LCVW-  897 (1082)
Q Consensus       828 ~~v~~l~~sp~~~~~lasg~------~dg--~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~-i~vw-  897 (1082)
                      ..+.+.+++| +++.+|...      .|+  .|.+++. .+.......+.  ..+.-.|+|||+.|++...... +++. 
T Consensus       350 ~~vsspaiSp-dG~~vA~v~~~~~~~~d~~s~Lwv~~~-gg~~~~lt~g~--~~t~PsWspDG~~lw~v~dg~~~~~v~~  425 (591)
T PRK13616        350 GNITSAALSR-SGRQVAAVVTLGRGAPDPASSLWVGPL-GGVAVQVLEGH--SLTRPSWSLDADAVWVVVDGNTVVRVIR  425 (591)
T ss_pred             cCcccceECC-CCCEEEEEEeecCCCCCcceEEEEEeC-CCcceeeecCC--CCCCceECCCCCceEEEecCcceEEEec
Confidence            4678999999 676666554      244  4555554 23222222332  3788899999998887753312 2222 


Q ss_pred             ----------EcCCcccccceeeeccCCCCCCCCCCcEEEEcCCCcEEEEEecCeEEE---EEccCcceee----eeccC
Q 001415          898 ----------SSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAI---FETTKLECVK----QWVPR  960 (1082)
Q Consensus       898 ----------d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~~d~~i~i---wd~~~~~~~~----~~~~~  960 (1082)
                                +++.++...           .....|..+.|||||+.++...+++|.+   -....|....    .+.. 
T Consensus       426 ~~~~gql~~~~vd~ge~~~-----------~~~g~Issl~wSpDG~RiA~i~~g~v~Va~Vvr~~~G~~~l~~~~~l~~-  493 (591)
T PRK13616        426 DPATGQLARTPVDASAVAS-----------RVPGPISELQLSRDGVRAAMIIGGKVYLAVVEQTEDGQYALTNPREVGP-  493 (591)
T ss_pred             cCCCceEEEEeccCchhhh-----------ccCCCcCeEEECCCCCEEEEEECCEEEEEEEEeCCCCceeecccEEeec-
Confidence                      333322110           0114689999999999999976788877   4444454111    1111 


Q ss_pred             CCCcceeEEEEcCCCceEEEeecCCcEEEEecC
Q 001415          961 ESSAPITHATFSCDSQLVYACFLDATVCVFSAA  993 (1082)
Q Consensus       961 ~h~~~i~~l~~s~dg~~l~t~s~dg~v~vwd~~  993 (1082)
                      +-...+.++.|..++.++ ++..++...+|.+.
T Consensus       494 ~l~~~~~~l~W~~~~~L~-V~~~~~~~~v~~v~  525 (591)
T PRK13616        494 GLGDTAVSLDWRTGDSLV-VGRSDPEHPVWYVN  525 (591)
T ss_pred             ccCCccccceEecCCEEE-EEecCCCCceEEEe
Confidence            113346889999999955 55555555566543

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=97.37  E-value=0.051  Score=57.62  Aligned_cols=220  Identities=13%  Similarity=0.084  Sum_probs=124.9

Q ss_pred             EEeecCCCeEEEee--CCeEEEEecCCCeeEEEECCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEecccceeeeeec--
Q 001415          792 FALSKNDSYVMSAS--GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLK--  867 (1082)
Q Consensus       792 l~~s~dg~~l~~~s--dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~--  867 (1082)
                      ..|.++...|....  .+.|.-|+..+++.. .+..+ ..+.++..-..++ .|+++  +..+++++..++..+..+.  
T Consensus        30 P~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~-~~~~p-~~~~~~~~~d~~g-~Lv~~--~~g~~~~~~~~~~~~t~~~~~  104 (307)
T COG3386          30 PVWDPDRGALLWVDILGGRIHRLDPETGKKR-VFPSP-GGFSSGALIDAGG-RLIAC--EHGVRLLDPDTGGKITLLAEP  104 (307)
T ss_pred             ccCcCCCCEEEEEeCCCCeEEEecCCcCceE-EEECC-CCcccceeecCCC-eEEEE--ccccEEEeccCCceeEEeccc
Confidence            34667777665554  688999998865433 23222 2334444333144 44433  2346777776555422221  


Q ss_pred             --c-cccCEEEEEEeCCCCEEEEEeC-----C----CcEEEEEcCC-cccccceeeeccCCCCCCCCCCcEEEEcCCCcE
Q 001415          868 --G-HSKRITGLAFSHALNVLVSSGA-----D----SQLCVWSSDG-WEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIH  934 (1082)
Q Consensus       868 --~-h~~~V~~l~~s~d~~~l~s~s~-----D----g~i~vwd~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~  934 (1082)
                        + -...-+.+...|+|.+.++...     .    ..-.+|.+.. +..     ......+.   ..-..++||||++.
T Consensus       105 ~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~-----~~l~~~~~---~~~NGla~SpDg~t  176 (307)
T COG3386         105 EDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGV-----VRLLDDDL---TIPNGLAFSPDGKT  176 (307)
T ss_pred             cCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCCCE-----EEeecCcE---EecCceEECCCCCE
Confidence              1 1244567788899987776544     1    1124666553 221     11121111   23368999999988


Q ss_pred             EEEE--ecCeEEEEEccC--cce---eeeeccCCCCcceeEEEEcCCCceEEEeecCC-cEEEEecCCceeeeeeCCCee
Q 001415          935 FLVV--HETQLAIFETTK--LEC---VKQWVPRESSAPITHATFSCDSQLVYACFLDA-TVCVFSAANLKLRCRINPSAY 1006 (1082)
Q Consensus       935 l~~~--~d~~i~iwd~~~--~~~---~~~~~~~~h~~~i~~l~~s~dg~~l~t~s~dg-~v~vwd~~~~~~~~~~~~~~~ 1006 (1082)
                      |..+  ..+.|.-|++..  +..   ........+.+..-.++...+|.+.+++-.+| .|.+|+.+ |+++..+.    
T Consensus       177 ly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~----  251 (307)
T COG3386         177 LYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIK----  251 (307)
T ss_pred             EEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEE----
Confidence            7774  447787777652  211   11122223356677788888898876555554 89999999 99998887    


Q ss_pred             cCCCCCCCCceeeEEEEeCCCCCeEEEEe
Q 001415         1007 LPAGVSSSNVHPLVIAAHPQEPNEFALGL 1035 (1082)
Q Consensus      1007 ~~~gh~~~~v~~~~~~~~~~d~~~l~s~~ 1035 (1082)
                      +|.      ..+.+++|--.+.+.|.+.+
T Consensus       252 lP~------~~~t~~~FgG~~~~~L~iTs  274 (307)
T COG3386         252 LPV------KRPTNPAFGGPDLNTLYITS  274 (307)
T ss_pred             CCC------CCCccceEeCCCcCEEEEEe
Confidence            332      23446777754555544443

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=97.36  E-value=0.2  Score=56.22  Aligned_cols=136  Identities=18%  Similarity=0.237  Sum_probs=76.0

Q ss_pred             EeecCCCeEEEee-CCeEEEEecCCCeeEEEECCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEecccceeeeeeccc-c
Q 001415          793 ALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGH-S  870 (1082)
Q Consensus       793 ~~s~dg~~l~~~s-dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h-~  870 (1082)
                      .++.+....+... ++.+.+.+-...+.   +. ..+.+..+++|| +++++|.-..+|.+.+....-.+.+..+... .
T Consensus       185 ~l~~~~~~~i~~~~g~~i~~i~~~~~~~---i~-~~~~i~~iavSp-ng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~  259 (410)
T PF04841_consen  185 LLSSDRVVEILLANGETIYIIDENSFKQ---ID-SDGPIIKIAVSP-NGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSK  259 (410)
T ss_pred             EeecCcceEEEEecCCEEEEEEcccccc---cc-CCCCeEEEEECC-CCCEEEEEECCCCEEEEECcccceeEEeecCcC
Confidence            3444554444443 45566444332211   22 346799999999 8999999999999999876655555555433 3


Q ss_pred             cCEEEEEEeCCCCEEEEEeCCCcEEEEEcCCcccccceeeeccCCCCCCCCCCcEEEEcCCCcEEEEEecCeEEEEEccC
Q 001415          871 KRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTK  950 (1082)
Q Consensus       871 ~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~~d~~i~iwd~~~  950 (1082)
                      .....+.|.-+...++.-  ...|.+.....                      ..+.|.-++..++...-..++|..-..
T Consensus       260 ~~p~~~~WCG~dav~l~~--~~~l~lvg~~~----------------------~~~~~~~~~~~~l~~E~DG~riit~~~  315 (410)
T PF04841_consen  260 SPPKQMAWCGNDAVVLSW--EDELLLVGPDG----------------------DSISFWYDGPVILVSEIDGVRIITSTS  315 (410)
T ss_pred             CCCcEEEEECCCcEEEEe--CCEEEEECCCC----------------------CceEEeccCceEEeccCCceEEEeCCc
Confidence            455677777554333332  23344443222                      224444444444444333477776555


Q ss_pred             cceeeee
Q 001415          951 LECVKQW  957 (1082)
Q Consensus       951 ~~~~~~~  957 (1082)
                      -+.++..
T Consensus       316 ~~~l~~V  322 (410)
T PF04841_consen  316 HEFLQRV  322 (410)
T ss_pred             eEEEEEC
Confidence            5554443

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=97.32  E-value=0.34  Score=54.03  Aligned_cols=256  Identities=14%  Similarity=0.140  Sum_probs=152.2

Q ss_pred             eeeecCCCCCceEEEEecCCCeEEEEEcCCCcEEEEEccccceeeeeceeeeccCCCCcccccccccCCCCceeEEEEec
Q 001415          351 VTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP  430 (1082)
Q Consensus       351 ~~~~~~h~~~v~~~~~spdg~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~sp  430 (1082)
                      +...+.-......+++.|+|..+.++......+.+-+.........                   ...-...-..+++++
T Consensus        23 ~~~~~~~~~~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~~n~~~~~-------------------~~~g~~~p~~i~v~~   83 (381)
T COG3391          23 VTAAISLGRGPGGVAVNPDGTQVYVANSGSNDVSVIDATSNTVTQS-------------------LSVGGVYPAGVAVNP   83 (381)
T ss_pred             EEEEeecCCCCceeEEcCccCEEEEEeecCceeeecccccceeeee-------------------ccCCCccccceeeCC
Confidence            3344443347788899999965555544444444444431111100                   001113456789999


Q ss_pred             CCCeEEEE-eCCCeEEEEEccCCceeeEEEEeeccccCeeEEEecCCCCceEEEEEe-CCCcEEEEEccCCceeEEeecC
Q 001415          431 DGSLFGVA-YSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCG-DDKTIKVWDATNGAKQYIFEGH  508 (1082)
Q Consensus       431 dg~~las~-~~d~~v~iwd~~~~~~~~~~~~~~~h~~~V~~l~fs~dg~~~~l~s~s-~d~~i~vwd~~~~~~~~~~~~h  508 (1082)
                      ++..+... ..++.|.+.|..+.+.....  ..+.  ....++|+++++.++++-.. .++++.+.|..+++.+.+...-
T Consensus        84 ~~~~vyv~~~~~~~v~vid~~~~~~~~~~--~vG~--~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG  159 (381)
T COG3391          84 AGNKVYVTTGDSNTVSVIDTATNTVLGSI--PVGL--GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVG  159 (381)
T ss_pred             CCCeEEEecCCCCeEEEEcCcccceeeEe--eecc--CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecC
Confidence            88855544 45688999998776655422  1222  56789999999864444333 4789999999999988876544


Q ss_pred             CcCeEEEeeeecCCceEEE-EecCCCcEEEEecCCCCceeeecCCCCceEEEEEccCCCeeeecccccceeEEEecCCCC
Q 001415          509 EAPVYSVCPHHKENIQFIF-STALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKN  587 (1082)
Q Consensus       509 ~~~v~~~~~~~~~~~~~l~-s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~i~~~~~~~~~~  587 (1082)
                      ..+ ..+++.++  |..++ +-..++.|.+.|........  ......+      +.         ...-..+.++++++
T Consensus       160 ~~P-~~~a~~p~--g~~vyv~~~~~~~v~vi~~~~~~v~~--~~~~~~~------~~---------~~~P~~i~v~~~g~  219 (381)
T COG3391         160 NTP-TGVAVDPD--GNKVYVTNSDDNTVSVIDTSGNSVVR--GSVGSLV------GV---------GTGPAGIAVDPDGN  219 (381)
T ss_pred             CCc-ceEEECCC--CCeEEEEecCCCeEEEEeCCCcceec--ccccccc------cc---------CCCCceEEECCCCC
Confidence            444 66666554  45444 44578899999865432221  0000000      00         00222345555555


Q ss_pred             EEEEEeC---CCeEEEEECCCcceEEEEecCCCCCCcCeEEEcCCCCEEEEEECC-CcEEEEEecCC
Q 001415          588 RFLAAGD---DFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTND-NGIKILATSDG  650 (1082)
Q Consensus       588 ~l~~~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~d-g~i~iwd~~~~  650 (1082)
                      ++.+...   ++.+...|..++........-... ....+.++|+|..+.+.... +.+.+.|..+.
T Consensus       220 ~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~-~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~  285 (381)
T COG3391         220 RVYVANDGSGSNNVLKIDTATGNVTATDLPVGSG-APRGVAVDPAGKAAYVANSQGGTVSVIDGATD  285 (381)
T ss_pred             EEEEEeccCCCceEEEEeCCCceEEEeccccccC-CCCceeECCCCCEEEEEecCCCeEEEEeCCCC
Confidence            5544332   368999999888777652222222 34678999999999888544 77888887765

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.29  E-value=0.12  Score=58.87  Aligned_cols=240  Identities=12%  Similarity=0.100  Sum_probs=124.2

Q ss_pred             ccEEEeecCCCeEEEee--CC----eEEEEecCCCeeEEEECCCCCCeeEEEEecCCCcEEEEEeCCC-----------c
Q 001415          789 VPCFALSKNDSYVMSAS--GG----KISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDS-----------S  851 (1082)
Q Consensus       789 i~~l~~s~dg~~l~~~s--dg----~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasg~~dg-----------~  851 (1082)
                      +..+++||||+++|.+-  +|    .++++|+.+++.+...-. ......+.|.+ +++.|+....+.           .
T Consensus       126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~-~~~~~~~~W~~-d~~~~~y~~~~~~~~~~~~~~~~~  203 (414)
T PF02897_consen  126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIE-NPKFSSVSWSD-DGKGFFYTRFDEDQRTSDSGYPRQ  203 (414)
T ss_dssp             EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEE-EEESEEEEECT-TSSEEEEEECSTTTSS-CCGCCEE
T ss_pred             eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCccc-ccccceEEEeC-CCCEEEEEEeCcccccccCCCCcE
Confidence            34678999999999773  23    499999999977653211 11123499999 655544443222           3


Q ss_pred             EEEEecccceee--eeeccccc--CEEEEEEeCCCCEEEEEeCC----CcEEEEEcCCc--ccccceeeeccCCCCCCCC
Q 001415          852 IQIYNVRVDEVK--SKLKGHSK--RITGLAFSHALNVLVSSGAD----SQLCVWSSDGW--EKQKNRFLQIPTGRTPTAQ  921 (1082)
Q Consensus       852 v~iwd~~~~~~~--~~l~~h~~--~V~~l~~s~d~~~l~s~s~D----g~i~vwd~~~~--~~~~~~~~~~~~~~~~~~~  921 (1082)
                      |+.|.+.+...-  ..+.....  ....+..++|+++|+.....    ..+.+-++..+  .......+....      .
T Consensus       204 v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~------~  277 (414)
T PF02897_consen  204 VYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPRE------D  277 (414)
T ss_dssp             EEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESS------S
T ss_pred             EEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCC------C
Confidence            788888765322  33333332  26678899999997754332    23666677663  111122222211      1


Q ss_pred             CCcEEEEcCCCcEEEEEe----cCeEEEEEccCcce---eeeeccCCCCc--ceeEEEEcCCCceE-EEeecCC--cEEE
Q 001415          922 SDTRVQFHQDQIHFLVVH----ETQLAIFETTKLEC---VKQWVPRESSA--PITHATFSCDSQLV-YACFLDA--TVCV  989 (1082)
Q Consensus       922 ~v~~~~fspdg~~l~~~~----d~~i~iwd~~~~~~---~~~~~~~~h~~--~i~~l~~s~dg~~l-~t~s~dg--~v~v  989 (1082)
                      .+....-+..+.+++.+.    .+.|.-.++.....   ...+.  .|..  .+..+..  .+.+| +....++  .|++
T Consensus       278 ~~~~~v~~~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~--~~~~~~~l~~~~~--~~~~Lvl~~~~~~~~~l~v  353 (414)
T PF02897_consen  278 GVEYYVDHHGDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLI--PEDEDVSLEDVSL--FKDYLVLSYRENGSSRLRV  353 (414)
T ss_dssp             S-EEEEEEETTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE----SSSEEEEEEEE--ETTEEEEEEEETTEEEEEE
T ss_pred             ceEEEEEccCCEEEEeeCCCCCCcEEEEecccccccccceeEEc--CCCCceeEEEEEE--ECCEEEEEEEECCccEEEE
Confidence            222323233444444433    35677777776653   21233  3333  4555544  34444 4444554  4888


Q ss_pred             EecCCceeeeeeCCCeecCCCCCCCCceeeEEEEeCCCCCeEEEEecC---CcEEEEccCCCC
Q 001415          990 FSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSD---GGVHVFEPLESE 1049 (1082)
Q Consensus       990 wd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~~~~~~~d~~~l~s~~~d---g~v~vW~~~~~~ 1049 (1082)
                      +++..+.....+.    ++..   ..+.  .+...+....+.++.++-   ++++.||+.+++
T Consensus       354 ~~~~~~~~~~~~~----~p~~---g~v~--~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~  407 (414)
T PF02897_consen  354 YDLDDGKESREIP----LPEA---GSVS--GVSGDFDSDELRFSYSSFTTPPTVYRYDLATGE  407 (414)
T ss_dssp             EETT-TEEEEEEE----SSSS---SEEE--EEES-TT-SEEEEEEEETTEEEEEEEEETTTTC
T ss_pred             EECCCCcEEeeec----CCcc---eEEe--ccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCC
Confidence            9999444444443    2221   1122  344444333444443332   578899999988

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=97.28  E-value=0.1  Score=55.61  Aligned_cols=232  Identities=11%  Similarity=0.136  Sum_probs=131.1

Q ss_pred             cCCceeeecccCCeEEEeeccccccCCCCCcccccCccccCCCCcceeecccCCCCCCCCccEEEeecCCCeEEEeeCCe
Q 001415          729 NSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGK  808 (1082)
Q Consensus       729 ~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~l~~~sdg~  808 (1082)
                      ..++.|+.|+.+| +.+++....                   .....+       .+...|..+...++-+.+++-+|+.
T Consensus         5 ~~~~~L~vGt~~G-l~~~~~~~~-------------------~~~~~i-------~~~~~I~ql~vl~~~~~llvLsd~~   57 (275)
T PF00780_consen    5 SWGDRLLVGTEDG-LYVYDLSDP-------------------SKPTRI-------LKLSSITQLSVLPELNLLLVLSDGQ   57 (275)
T ss_pred             cCCCEEEEEECCC-EEEEEecCC-------------------ccceeE-------eecceEEEEEEecccCEEEEEcCCc
Confidence            3567788888888 777765110                   000000       0334488999999989998889999


Q ss_pred             EEEEecCCCeeEEEE--------------CCCCCCeeEEE--EecCCCcEEEEEeCCCcEEEEecccc-----eeeeeec
Q 001415          809 ISLFNMMTFKTMATF--------------MPPPPAATFLA--FHPQDNNIIAIGMDDSSIQIYNVRVD-----EVKSKLK  867 (1082)
Q Consensus       809 i~iwd~~~~~~~~~~--------------~~~~~~v~~l~--~sp~~~~~lasg~~dg~v~iwd~~~~-----~~~~~l~  867 (1082)
                      +.++++.........              ......+...+  -...+...|+++. ...|.+|.....     +...++.
T Consensus        58 l~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~-kk~i~i~~~~~~~~~f~~~~ke~~  136 (275)
T PF00780_consen   58 LYVYDLDSLEPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAV-KKKILIYEWNDPRNSFSKLLKEIS  136 (275)
T ss_pred             cEEEEchhhccccccccccccccccccccccccCCeeEEeeccccccceEEEEEE-CCEEEEEEEECCcccccceeEEEE
Confidence            999998865444311              11122344444  1122445555554 458988887653     3445554


Q ss_pred             ccccCEEEEEEeCCCCEEEEEeCCCcEEEEEcCCcccccceeeeccCCCC-----CCCCCCcEEEEcCCCcEEEEEecCe
Q 001415          868 GHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRT-----PTAQSDTRVQFHQDQIHFLVVHETQ  942 (1082)
Q Consensus       868 ~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~-----~~~~~v~~~~fspdg~~l~~~~d~~  942 (1082)
                       -...+.+++|.  ++.++.|..++ ..+.|+.++....  +........     ........+.--+++.+|++. +..
T Consensus       137 -lp~~~~~i~~~--~~~i~v~~~~~-f~~idl~~~~~~~--l~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Ll~~-~~~  209 (275)
T PF00780_consen  137 -LPDPPSSIAFL--GNKICVGTSKG-FYLIDLNTGSPSE--LLDPSDSSSSFKSRNSSSKPLGIFQLSDNEFLLCY-DNI  209 (275)
T ss_pred             -cCCCcEEEEEe--CCEEEEEeCCc-eEEEecCCCCceE--EeCccCCcchhhhcccCCCceEEEEeCCceEEEEe-cce
Confidence             34778899998  66777777655 7889998754322  111111000     000111222223345665543 332


Q ss_pred             EEEEEccCcceee--eeccCCCCcceeEEEEcCCCceEEEeecCCcEEEEecCCceeeeeeC
Q 001415          943 LAIFETTKLECVK--QWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRIN 1002 (1082)
Q Consensus       943 i~iwd~~~~~~~~--~~~~~~h~~~i~~l~~s~dg~~l~t~s~dg~v~vwd~~~~~~~~~~~ 1002 (1082)
                      -.+.|. .|+..+  .+.-   ...+.++++  ...||+..+. +.|.||++.++++++.+.
T Consensus       210 g~fv~~-~G~~~r~~~i~W---~~~p~~~~~--~~pyli~~~~-~~iEV~~~~~~~lvQ~i~  264 (275)
T PF00780_consen  210 GVFVNK-NGEPSRKSTIQW---SSAPQSVAY--SSPYLIAFSS-NSIEVRSLETGELVQTIP  264 (275)
T ss_pred             EEEEcC-CCCcCcccEEEc---CCchhEEEE--ECCEEEEECC-CEEEEEECcCCcEEEEEE
Confidence            222333 443332  1111   235556666  3457776654 569999999999998877

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.27  E-value=0.038  Score=55.04  Aligned_cols=230  Identities=17%  Similarity=0.213  Sum_probs=124.8

Q ss_pred             EEEEECCCcceEEEEecCCCCCCcCeEEEcCCCCEEEEEECC-----CcEEEEEecCCccceeecccccccccccccccC
Q 001415          598 IKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTND-----NGIKILATSDGIRLLRTFENLAYDASRTSENSK  672 (1082)
Q Consensus       598 i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  672 (1082)
                      ..++|..+.+...++....+....-.-.|||||.+|+..-+|     |.|-|||...+.+.+..+..+...         
T Consensus        93 ~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~GiG---------  163 (366)
T COG3490          93 AMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDAREGFQRVGEFSTHGIG---------  163 (366)
T ss_pred             EEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEecccccceecccccCCcC---------
Confidence            457787777766665443332222335699999999876443     779999998776666666554332         


Q ss_pred             CCCccccCCCCceeeeccC-------CceeEEEecccCC---------CCccccccccCcccccceeEEEEccCCceeee
Q 001415          673 NGDVRSLADVKPRITEESN-------DKSKVWKLTELSE---------PNQCRSLRLPENLRATKISRLIFTNSGNAILA  736 (1082)
Q Consensus       673 ~~~~~~s~~~~~l~~~~~d-------~~i~iw~~~~~~~---------~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~  736 (1082)
                      ..++...+||+.++.+...       +..+ .++..++.         ...+....+|...+...|..++..+||..++.
T Consensus       164 pHev~lm~DGrtlvvanGGIethpdfgR~~-lNldsMePSlvlld~atG~liekh~Lp~~l~~lSiRHld~g~dgtvwfg  242 (366)
T COG3490         164 PHEVTLMADGRTLVVANGGIETHPDFGRTE-LNLDSMEPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGRDGTVWFG  242 (366)
T ss_pred             cceeEEecCCcEEEEeCCceecccccCccc-cchhhcCccEEEEeccccchhhhccCchhhhhcceeeeeeCCCCcEEEE
Confidence            2334448899998876431       1111 12222211         12223334444446667888888888875554


Q ss_pred             cccCCeEEEeeccccccC-CCCCcccccCccccCCCCcceeecccCCCCCCCCccEEEeecCCCeEEEee--CCeEEEEe
Q 001415          737 LASNAIHLLWKWQRTERN-SSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS--GGKISLFN  813 (1082)
Q Consensus       737 ~~~d~~i~iw~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~l~~~s--dg~i~iwd  813 (1082)
                      +--.|.-       .+.. .-+.......++..+........       ....|-+++.+.+..+++..+  .+...+||
T Consensus       243 cQy~G~~-------~d~ppLvg~~~~g~~l~~~~~pee~~~~-------~anYigsiA~n~~~glV~lTSP~GN~~vi~d  308 (366)
T COG3490         243 CQYRGPR-------NDLPPLVGHFRKGEPLEFLDLPEEQTAA-------FANYIGSIAANRRDGLVALTSPRGNRAVIWD  308 (366)
T ss_pred             EEeeCCC-------ccCCcceeeccCCCcCcccCCCHHHHHH-------HHhhhhheeecccCCeEEEecCCCCeEEEEE
Confidence            4332210       0000 00111111122333333222211       345678888887777777666  46799999


Q ss_pred             cCCCeeEEEECCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEe
Q 001415          814 MMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYN  856 (1082)
Q Consensus       814 ~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd  856 (1082)
                      ..++..+..-.-.  .+..++-..  + =+++.+.+|.+.++.
T Consensus       309 a~tG~vv~~a~l~--daaGva~~~--~-gf~vssg~G~~~~~s  346 (366)
T COG3490         309 AATGAVVSEAALP--DAAGVAAAK--G-GFAVSSGQGRIIFYS  346 (366)
T ss_pred             cCCCcEEeccccc--ccccceecc--C-ceEEecCCceEEecc
Confidence            9999887653321  122233322  2 344455677777764

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=97.23  E-value=0.00016  Score=79.04  Aligned_cols=199  Identities=15%  Similarity=0.175  Sum_probs=129.9

Q ss_pred             CCCccEEEeecCCC--eEEEee-CCeEEEEecCCCee--EEEECCCCCCeeEEEEecCCCcEEEEEeC----CCcEEEEe
Q 001415          786 EEAVPCFALSKNDS--YVMSAS-GGKISLFNMMTFKT--MATFMPPPPAATFLAFHPQDNNIIAIGMD----DSSIQIYN  856 (1082)
Q Consensus       786 ~~~i~~l~~s~dg~--~l~~~s-dg~i~iwd~~~~~~--~~~~~~~~~~v~~l~~sp~~~~~lasg~~----dg~v~iwd  856 (1082)
                      ...+.|++...+..  ++++|. +|.|.+-......-  .....++...+++++|++-|...||.|-.    |..+.|||
T Consensus        56 tqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwd  135 (783)
T KOG1008|consen   56 TQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWD  135 (783)
T ss_pred             CCCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCcccee
Confidence            44566776655443  666665 68888887764322  23445667789999999988888988753    56899999


Q ss_pred             cccc--eee--eeecc-cccCEEEEEEeCCCCEEEEEeCCCcEEEEEcCCcccccceeeeccCCCCCCCCCCcEEEEcC-
Q 001415          857 VRVD--EVK--SKLKG-HSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQ-  930 (1082)
Q Consensus       857 ~~~~--~~~--~~l~~-h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fsp-  930 (1082)
                      +.++  .+.  ..+.+ -.....+++|-.|.+++.+|.....+.++|+...... ...+.+        ..+..+..+| 
T Consensus       136 i~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~-~~svnT--------k~vqG~tVdp~  206 (783)
T KOG1008|consen  136 INSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDS-VSSVNT--------KYVQGITVDPF  206 (783)
T ss_pred             cccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhh-hhhhhh--------hhcccceecCC
Confidence            9876  221  12222 3344568899989999999999989999998842111 111111        2356677888 


Q ss_pred             CCcEEEEEecCeEEEEE-ccCcceeeeeccCC---CCcceeEEEEcCCC-ceEEEee-cCCcEEEEecC
Q 001415          931 DQIHFLVVHETQLAIFE-TTKLECVKQWVPRE---SSAPITHATFSCDS-QLVYACF-LDATVCVFSAA  993 (1082)
Q Consensus       931 dg~~l~~~~d~~i~iwd-~~~~~~~~~~~~~~---h~~~i~~l~~s~dg-~~l~t~s-~dg~v~vwd~~  993 (1082)
                      .+.+++...|+.+.+|| ..+-+.......+.   -...+..++|+|-. ..|++.+ ..++|+++|+.
T Consensus       207 ~~nY~cs~~dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~  275 (783)
T KOG1008|consen  207 SPNYFCSNSDGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDIC  275 (783)
T ss_pred             CCCceeccccCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEeccc
Confidence            78899998899999999 33332221111111   12348899999954 2455555 45789999874

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.21  E-value=0.0014  Score=72.11  Aligned_cols=94  Identities=18%  Similarity=0.434  Sum_probs=72.7

Q ss_pred             CCCceEEEEecCCCeEEEEEcCCCcEEEEEccccceeeeeceeeeccCCCCcccccccccCCCCcee-EEEEecCCCeEE
Q 001415          358 GSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVN-RVIWSPDGSLFG  436 (1082)
Q Consensus       358 ~~~v~~~~~spdg~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~-~l~~spdg~~la  436 (1082)
                      .-.|..+.|+|.-. |+|++..+|.|.+..++ .+++       |+            +.-|...++ +++|.|||+.||
T Consensus        20 ~~~i~~~ewnP~~d-LiA~~t~~gelli~R~n-~qRl-------wt------------ip~p~~~v~~sL~W~~DGklla   78 (665)
T KOG4640|consen   20 PINIKRIEWNPKMD-LIATRTEKGELLIHRLN-WQRL-------WT------------IPIPGENVTASLCWRPDGKLLA   78 (665)
T ss_pred             ccceEEEEEcCccc-hhheeccCCcEEEEEec-ccee-------Ee------------ccCCCCccceeeeecCCCCEEE
Confidence            45688899999999 79999999999998887 4433       33            333455666 999999999999


Q ss_pred             EEeCCCeEEEEEccCCceeeEEEEeeccccCeeEEEec
Q 001415          437 VAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFS  474 (1082)
Q Consensus       437 s~~~d~~v~iwd~~~~~~~~~~~~~~~h~~~V~~l~fs  474 (1082)
                      +|-.||+|++-|++++..+...  ...-...|.++-|+
T Consensus        79 Vg~kdG~I~L~Dve~~~~l~~~--~~s~e~~is~~~w~  114 (665)
T KOG4640|consen   79 VGFKDGTIRLHDVEKGGRLVSF--LFSVETDISKGIWD  114 (665)
T ss_pred             EEecCCeEEEEEccCCCceecc--ccccccchheeecc
Confidence            9999999999999998866531  12234567777776

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=97.10  E-value=0.029  Score=66.37  Aligned_cols=146  Identities=12%  Similarity=0.144  Sum_probs=97.9

Q ss_pred             CCcEEEEE-eCCCcEEEEecccceeeeeecccccC-EEEEEEeCCC-------CEEEEEeCCCcEEEEEcCCccccccee
Q 001415          839 DNNIIAIG-MDDSSIQIYNVRVDEVKSKLKGHSKR-ITGLAFSHAL-------NVLVSSGADSQLCVWSSDGWEKQKNRF  909 (1082)
Q Consensus       839 ~~~~lasg-~~dg~v~iwd~~~~~~~~~l~~h~~~-V~~l~~s~d~-------~~l~s~s~Dg~i~vwd~~~~~~~~~~~  909 (1082)
                      +..+|+.. .....|+-.|+..|+.+..++.|... |..++  |+.       .-...|-.+..+..||.+-..   ..+
T Consensus       492 d~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~--p~~K~aqlt~e~tflGls~n~lfriDpR~~~---~k~  566 (794)
T PF08553_consen  492 DRNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIA--PDSKFAQLTNEQTFLGLSDNSLFRIDPRLSG---NKL  566 (794)
T ss_pred             ccceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEec--ccccccccCCCceEEEECCCceEEeccCCCC---Cce
Confidence            44454443 35678999999999999999988754 55544  432       234456667779999987532   122


Q ss_pred             eeccCCCCCCCCCCcEEEEcCCCcEEEEEecCeEEEEEccCcceeeeeccCCCCcceeEEEEcCCCceEEEeecCCcEEE
Q 001415          910 LQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCV  989 (1082)
Q Consensus       910 ~~~~~~~~~~~~~v~~~~fspdg~~l~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~dg~~l~t~s~dg~v~v  989 (1082)
                      +..............+++-+.+|...+.+.+|.|++||- .|..-.+..+ +-..+|.+|+.+.||+||++.+ +..+.+
T Consensus       567 v~~~~k~Y~~~~~Fs~~aTt~~G~iavgs~~G~IRLyd~-~g~~AKT~lp-~lG~pI~~iDvt~DGkwilaTc-~tyLlL  643 (794)
T PF08553_consen  567 VDSQSKQYSSKNNFSCFATTEDGYIAVGSNKGDIRLYDR-LGKRAKTALP-GLGDPIIGIDVTADGKWILATC-KTYLLL  643 (794)
T ss_pred             eeccccccccCCCceEEEecCCceEEEEeCCCcEEeecc-cchhhhhcCC-CCCCCeeEEEecCCCcEEEEee-cceEEE
Confidence            221111112224567888888888777789999999994 3333333322 4478999999999999988665 667777


Q ss_pred             Eec
Q 001415          990 FSA  992 (1082)
Q Consensus       990 wd~  992 (1082)
                      ++.
T Consensus       644 i~t  646 (794)
T PF08553_consen  644 IDT  646 (794)
T ss_pred             EEE
Confidence            775

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=97.07  E-value=0.2  Score=53.39  Aligned_cols=221  Identities=13%  Similarity=0.141  Sum_probs=125.0

Q ss_pred             cCCCeEEEeeCCeEEEEecC-CCeeEEEECCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEecccceeeeee--------
Q 001415          796 KNDSYVMSASGGKISLFNMM-TFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKL--------  866 (1082)
Q Consensus       796 ~dg~~l~~~sdg~i~iwd~~-~~~~~~~~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l--------  866 (1082)
                      ..++.|+.|.++.+.+++.. .........  ...|..+...| +-+.|++-+ |+.++++++..-.....-        
T Consensus         5 ~~~~~L~vGt~~Gl~~~~~~~~~~~~~i~~--~~~I~ql~vl~-~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~   80 (275)
T PF00780_consen    5 SWGDRLLVGTEDGLYVYDLSDPSKPTRILK--LSSITQLSVLP-ELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKS   80 (275)
T ss_pred             cCCCEEEEEECCCEEEEEecCCccceeEee--cceEEEEEEec-ccCEEEEEc-CCccEEEEchhhcccccccccccccc
Confidence            45678888886559999993 333333332  22399999999 555555443 599999998764333210        


Q ss_pred             ------cccccCEEEEE---EeCCCCEEEEEeCCCcEEEEEcCCcccc---cceeeeccCCCCCCCCCCcEEEEcCCCcE
Q 001415          867 ------KGHSKRITGLA---FSHALNVLVSSGADSQLCVWSSDGWEKQ---KNRFLQIPTGRTPTAQSDTRVQFHQDQIH  934 (1082)
Q Consensus       867 ------~~h~~~V~~l~---~s~d~~~l~s~s~Dg~i~vwd~~~~~~~---~~~~~~~~~~~~~~~~~v~~~~fspdg~~  934 (1082)
                            ......+...+   -.....+|+.+ ...+|.+|........   ..+-+..+       ..+..++|.  +..
T Consensus        81 ~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va-~kk~i~i~~~~~~~~~f~~~~ke~~lp-------~~~~~i~~~--~~~  150 (275)
T PF00780_consen   81 RSLPTKLPETKGVSFFAVNGGHEGSRRLCVA-VKKKILIYEWNDPRNSFSKLLKEISLP-------DPPSSIAFL--GNK  150 (275)
T ss_pred             ccccccccccCCeeEEeeccccccceEEEEE-ECCEEEEEEEECCcccccceeEEEEcC-------CCcEEEEEe--CCE
Confidence                  11223344444   11233445544 4558999988773211   11111221       456888888  667


Q ss_pred             EEEEecCeEEEEEccCcceeeeeccCCC----------CcceeEEEEcCCCceEEEeecCCcEEEEecCCceeee--eeC
Q 001415          935 FLVVHETQLAIFETTKLECVKQWVPRES----------SAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRC--RIN 1002 (1082)
Q Consensus       935 l~~~~d~~i~iwd~~~~~~~~~~~~~~h----------~~~i~~l~~s~dg~~l~t~s~dg~v~vwd~~~~~~~~--~~~ 1002 (1082)
                      ++.+..+...+.|+.++.....+.....          ..++..+... ++++|++-  |..-..-|. .|+...  .+.
T Consensus       151 i~v~~~~~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~e~Ll~~--~~~g~fv~~-~G~~~r~~~i~  226 (275)
T PF00780_consen  151 ICVGTSKGFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQLS-DNEFLLCY--DNIGVFVNK-NGEPSRKSTIQ  226 (275)
T ss_pred             EEEEeCCceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEeC-CceEEEEe--cceEEEEcC-CCCcCcccEEE
Confidence            7777788899999987776554432221          2234444443 46777754  333333343 444332  111


Q ss_pred             CCeecCCCCCCCCceeeEEEEeCCCCCeEEEEecCCcEEEEccCCCC
Q 001415         1003 PSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESE 1049 (1082)
Q Consensus      1003 ~~~~~~~gh~~~~v~~~~~~~~~~d~~~l~s~~~dg~v~vW~~~~~~ 1049 (1082)
                         |.        ..+..+.+..   .+|+..+. +.|.||++.+++
T Consensus       227 ---W~--------~~p~~~~~~~---pyli~~~~-~~iEV~~~~~~~  258 (275)
T PF00780_consen  227 ---WS--------SAPQSVAYSS---PYLIAFSS-NSIEVRSLETGE  258 (275)
T ss_pred             ---cC--------CchhEEEEEC---CEEEEECC-CEEEEEECcCCc
Confidence               10        1344677654   36665554 559999999998

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=97.04  E-value=0.22  Score=54.37  Aligned_cols=219  Identities=13%  Similarity=0.097  Sum_probs=117.7

Q ss_pred             CcEEEEEccccceeeeeceeeeccCCCCcccccccccCCCCceeEEE---EecC----CCeEEEEeC---------C-Ce
Q 001415          381 GDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVI---WSPD----GSLFGVAYS---------R-HI  443 (1082)
Q Consensus       381 g~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~---~spd----g~~las~~~---------d-~~  443 (1082)
                      +.|++.|..+.+.+.+..+.                  ....+++++   |..+    ..+|++|+.         . |.
T Consensus         2 s~i~l~d~~~~~~~~~~~l~------------------~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gr   63 (321)
T PF03178_consen    2 SSIRLVDPTTFEVLDSFELE------------------PNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGR   63 (321)
T ss_dssp             -EEEEEETTTSSEEEEEEEE------------------TTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EE
T ss_pred             cEEEEEeCCCCeEEEEEECC------------------CCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcE
Confidence            35778888777776654332                  122444443   3332    568888753         2 88


Q ss_pred             EEEEEccCC----ceeeEEEEeeccccCeeEEEecCCCCceEEEEEeCCCcEEEEEccCCc-eeEEeec-CCcCeEEEee
Q 001415          444 VQIYSYHGG----DEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGA-KQYIFEG-HEAPVYSVCP  517 (1082)
Q Consensus       444 v~iwd~~~~----~~~~~~~~~~~h~~~V~~l~fs~dg~~~~l~s~s~d~~i~vwd~~~~~-~~~~~~~-h~~~v~~~~~  517 (1082)
                      |.++++...    ..+..... ....++|++++-- +|.  ++++.  .+.|.+|++...+ ....-.. ....+.++..
T Consensus        64 i~v~~i~~~~~~~~~l~~i~~-~~~~g~V~ai~~~-~~~--lv~~~--g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~  137 (321)
T PF03178_consen   64 ILVFEISESPENNFKLKLIHS-TEVKGPVTAICSF-NGR--LVVAV--GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSV  137 (321)
T ss_dssp             EEEEEECSS-----EEEEEEE-EEESS-EEEEEEE-TTE--EEEEE--TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEE
T ss_pred             EEEEEEEcccccceEEEEEEE-EeecCcceEhhhh-CCE--EEEee--cCEEEEEEccCcccchhhheecceEEEEEEec
Confidence            999999984    23332222 2357889998866 333  33333  4789999999888 4433221 2235555554


Q ss_pred             eecCCceEEEEecCCCcEEEEecCCCCceeeecCCCCceEEEEEccCCCeeeecccccceeEEEecCCCCEEEEEeCCCe
Q 001415          518 HHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFS  597 (1082)
Q Consensus       518 ~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~  597 (1082)
                      .  .  ++++.|...+.+.++.++.....         ..-++-+..         ...+.++.+-++++.++++..+|.
T Consensus       138 ~--~--~~I~vgD~~~sv~~~~~~~~~~~---------l~~va~d~~---------~~~v~~~~~l~d~~~~i~~D~~gn  195 (321)
T PF03178_consen  138 F--K--NYILVGDAMKSVSLLRYDEENNK---------LILVARDYQ---------PRWVTAAEFLVDEDTIIVGDKDGN  195 (321)
T ss_dssp             E--T--TEEEEEESSSSEEEEEEETTTE----------EEEEEEESS----------BEEEEEEEE-SSSEEEEEETTSE
T ss_pred             c--c--cEEEEEEcccCEEEEEEEccCCE---------EEEEEecCC---------CccEEEEEEecCCcEEEEEcCCCe
Confidence            3  3  48888888888887755542221         111111111         113344444433347888899999


Q ss_pred             EEEEECCC-------c--ceEEEEecCCCCCCcCeE---EEcC--CC------CEEEEEECCCcEEEEE
Q 001415          598 IKFWDMDS-------V--QLLTSIDADGGLPASPRI---RFNK--DG------CLLAVSTNDNGIKILA  646 (1082)
Q Consensus       598 i~iwd~~~-------~--~~~~~~~~~~~~~~i~~~---~~s~--dg------~~l~~~~~dg~i~iwd  646 (1082)
                      +.++....       +  ++......+-+ ..|+++   ++.|  .+      ..++.++.+|.|.+.-
T Consensus       196 l~~l~~~~~~~~~~~~~~~L~~~~~f~lg-~~v~~~~~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~l~  263 (321)
T PF03178_consen  196 LFVLRYNPEIPNSRDGDPKLERISSFHLG-DIVNSFRRGSLIPRSGSSESPNRPQILYGTVDGSIGVLI  263 (321)
T ss_dssp             EEEEEE-SS-SSTTTTTTBEEEEEEEE-S-S-EEEEEE--SS--SSSS-TTEEEEEEEEETTS-EEEEE
T ss_pred             EEEEEECCCCcccccccccceeEEEEECC-CccceEEEEEeeecCCCCcccccceEEEEecCCEEEEEE
Confidence            99887652       2  22222222222 135555   4444  12      2478888999988543

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=97.04  E-value=0.26  Score=54.31  Aligned_cols=93  Identities=17%  Similarity=0.258  Sum_probs=60.2

Q ss_pred             EEEEecCCCeEEEEeCCCeEEE---EEccCCc---e---eeEEEEeeccc-cCeeEEEecCC---C------CceEEEEE
Q 001415          425 RVIWSPDGSLFGVAYSRHIVQI---YSYHGGD---E---VRQHLEIDAHV-GGVNDIAFSHP---N------KQLCVITC  485 (1082)
Q Consensus       425 ~l~~spdg~~las~~~d~~v~i---wd~~~~~---~---~~~~~~~~~h~-~~V~~l~fs~d---g------~~~~l~s~  485 (1082)
                      .++.||++++||.+..+..+.+   |+.....   .   +.-...+.... ..|+++.+-|=   .      ....++.|
T Consensus         6 ~isls~~~d~laiA~~~r~vil~~~w~~~~~~~~~~~~~~~~~g~l~~~~~e~ITsi~clpl~s~~~s~~~~dw~~I~VG   85 (415)
T PF14655_consen    6 SISLSPDGDLLAIARGQRLVILTSKWDSSRKGENENTYSISWSGPLDDEPGECITSILCLPLSSQKRSTGGPDWTCIAVG   85 (415)
T ss_pred             eEEecCCCCEEEEEcCCEEEEEEeeccccccCCCCCeEEEEeeeeccCCCCCEEEEEEEEEeecccccCCCCCcEEEEEE
Confidence            4688999999999988777666   6442211   1   11111122111 46777666432   1      12289999


Q ss_pred             eCCCcEEEEEccCCceeEEeecCCcCeEEEeee
Q 001415          486 GDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPH  518 (1082)
Q Consensus       486 s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~  518 (1082)
                      ..+|.|++|. ++|..+..-.-|..+|..+.+.
T Consensus        86 ~ssG~vrfyt-e~G~LL~~Q~~h~~pV~~ik~~  117 (415)
T PF14655_consen   86 TSSGYVRFYT-ENGVLLLSQLLHEEPVLKIKCR  117 (415)
T ss_pred             ecccEEEEEe-ccchHHHHHhcCccceEEEEec
Confidence            9999999999 6888776666688888888754

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=97.02  E-value=0.11  Score=56.77  Aligned_cols=175  Identities=15%  Similarity=0.144  Sum_probs=103.3

Q ss_pred             CeEEEEecCCCeeEEEECCCCC-CeeEEE---EecC---CCcEEEEEeC----------CCcEEEEecccc----eeeee
Q 001415          807 GKISLFNMMTFKTMATFMPPPP-AATFLA---FHPQ---DNNIIAIGMD----------DSSIQIYNVRVD----EVKSK  865 (1082)
Q Consensus       807 g~i~iwd~~~~~~~~~~~~~~~-~v~~l~---~sp~---~~~~lasg~~----------dg~v~iwd~~~~----~~~~~  865 (1082)
                      ..|++.|..+.+.+..+.-... .+++++   +..+   ...+|++|+.          .|.|.++++...    ..+..
T Consensus         2 s~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~   81 (321)
T PF03178_consen    2 SSIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKL   81 (321)
T ss_dssp             -EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEE
T ss_pred             cEEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEE
Confidence            3578888888877766543332 344433   3321   1578888764          289999999884    12222


Q ss_pred             e--cccccCEEEEEEeCCCCEEEEEeCCCcEEEEEcCCcc-cccceeeeccCCCCCCCCCCcEEEEcCCCcEEEEEe-cC
Q 001415          866 L--KGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWE-KQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVH-ET  941 (1082)
Q Consensus       866 l--~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~~-d~  941 (1082)
                      +  ....++|++++-- ++. |+.+. .+.|.+|++...+ .........         ..........+.++++++ .+
T Consensus        82 i~~~~~~g~V~ai~~~-~~~-lv~~~-g~~l~v~~l~~~~~l~~~~~~~~---------~~~i~sl~~~~~~I~vgD~~~  149 (321)
T PF03178_consen   82 IHSTEVKGPVTAICSF-NGR-LVVAV-GNKLYVYDLDNSKTLLKKAFYDS---------PFYITSLSVFKNYILVGDAMK  149 (321)
T ss_dssp             EEEEEESS-EEEEEEE-TTE-EEEEE-TTEEEEEEEETTSSEEEEEEE-B---------SSSEEEEEEETTEEEEEESSS
T ss_pred             EEEEeecCcceEhhhh-CCE-EEEee-cCEEEEEEccCcccchhhheecc---------eEEEEEEeccccEEEEEEccc
Confidence            1  2357889999876 444 44443 4789999999866 322222211         123344444455777753 46


Q ss_pred             eEEEEEccC-cceeeeeccCCCCcceeEEEEcCCCceEEEeecCCcEEEEecC
Q 001415          942 QLAIFETTK-LECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAA  993 (1082)
Q Consensus       942 ~i~iwd~~~-~~~~~~~~~~~h~~~i~~l~~s~dg~~l~t~s~dg~v~vwd~~  993 (1082)
                      .+.++..+. ...+..+..+.....++++.|-+|++.++.+..+|.+.++...
T Consensus       150 sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~  202 (321)
T PF03178_consen  150 SVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYN  202 (321)
T ss_dssp             SEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-
T ss_pred             CEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEEC
Confidence            677665443 2223333322335678999998777789999999999999886

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=96.99  E-value=0.24  Score=54.63  Aligned_cols=83  Identities=7%  Similarity=0.110  Sum_probs=55.9

Q ss_pred             CCCCccEEEeecCCCeEEEeeC-CeEEEEecCCCeeEEEECCCCCCeeE-EEEecCC----------------Cc-EEEE
Q 001415          785 PEEAVPCFALSKNDSYVMSASG-GKISLFNMMTFKTMATFMPPPPAATF-LAFHPQD----------------NN-IIAI  845 (1082)
Q Consensus       785 ~~~~i~~l~~s~dg~~l~~~sd-g~i~iwd~~~~~~~~~~~~~~~~v~~-l~~sp~~----------------~~-~las  845 (1082)
                      ....+.+++.+|++++.|+..+ |.|.++|+.++..++..++-.+.-.. +......                .. +++-
T Consensus       306 ~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvIy  385 (415)
T PF14655_consen  306 SKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVIY  385 (415)
T ss_pred             CCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEEEEE
Confidence            4566889999999988888754 99999999998888777665433111 1111001                11 3344


Q ss_pred             EeCCCcEEEEecccceeeeeec
Q 001415          846 GMDDSSIQIYNVRVDEVKSKLK  867 (1082)
Q Consensus       846 g~~dg~v~iwd~~~~~~~~~l~  867 (1082)
                      +-.-|.|.||.+++|..+..+.
T Consensus       386 aprRg~lEvW~~~~g~Rv~a~~  407 (415)
T PF14655_consen  386 APRRGILEVWSMRQGPRVAAFN  407 (415)
T ss_pred             eccCCeEEEEecCCCCEEEEEE
Confidence            5568899999999887665554

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.96  E-value=0.013  Score=63.33  Aligned_cols=147  Identities=12%  Similarity=0.124  Sum_probs=93.5

Q ss_pred             ceEEEEEeCCCcEEEEEccCCceeEEeecCCcCeEEEeeeecCCceEE-----EEecCCCcEEEEecCCCCce-eeecCC
Q 001415          479 QLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFI-----FSTALDGKIKAWLYDNLGSR-VDYEAP  552 (1082)
Q Consensus       479 ~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l-----~s~~~dg~i~iwd~~~~~~~-~~~~~~  552 (1082)
                      .+++.++.....++--|++.|+.+..+.-|.. |.-+.+.++..+..+     +.|-.|..|.-||.+-.... +...  
T Consensus       346 nlil~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~--  422 (644)
T KOG2395|consen  346 NLILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVV--  422 (644)
T ss_pred             ceEeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeee--
Confidence            34677777778899999999999999987766 666666665544433     34556888999998743321 1000  


Q ss_pred             CCceEEEEEccCCCeeeecccccceeEEEecCCCCEEEEEeCCCeEEEEECCCcce-EEEEecCCCCCCcCeEEEcCCCC
Q 001415          553 GRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQL-LTSIDADGGLPASPRIRFNKDGC  631 (1082)
Q Consensus       553 ~~~v~~~~~s~d~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~~~~i~~~~~s~dg~  631 (1082)
                          .+-.|+          +.....|.+-..+ .++++|+.+|.||+||- .+.. ...+.+-+.  +|..+..+.||+
T Consensus       423 ----q~kqy~----------~k~nFsc~aTT~s-G~IvvgS~~GdIRLYdr-i~~~AKTAlPgLG~--~I~hVdvtadGK  484 (644)
T KOG2395|consen  423 ----QSKQYS----------TKNNFSCFATTES-GYIVVGSLKGDIRLYDR-IGRRAKTALPGLGD--AIKHVDVTADGK  484 (644)
T ss_pred             ----eccccc----------cccccceeeecCC-ceEEEeecCCcEEeehh-hhhhhhhcccccCC--ceeeEEeeccCc
Confidence                000010          0112233333333 37999999999999997 4433 333444443  799999999999


Q ss_pred             EEEEEECCCcEEEEEe
Q 001415          632 LLAVSTNDNGIKILAT  647 (1082)
Q Consensus       632 ~l~~~~~dg~i~iwd~  647 (1082)
                      +|+..+. ..+.+.++
T Consensus       485 wil~Tc~-tyLlLi~t  499 (644)
T KOG2395|consen  485 WILATCK-TYLLLIDT  499 (644)
T ss_pred             EEEEecc-cEEEEEEE
Confidence            9887664 55555554

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.94  E-value=0.028  Score=66.09  Aligned_cols=100  Identities=18%  Similarity=0.245  Sum_probs=71.0

Q ss_pred             EEEEEcCCCcEEEEEccccceeeeeceeeeccCCCCcccccccccCCCCceeEEEEecCCCeEEEEeCCCeEEEEEccCC
Q 001415          373 LLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGG  452 (1082)
Q Consensus       373 llasgs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d~~v~iwd~~~~  452 (1082)
                      .++.|+..|.|...|+.+.-....     |             -..-.++|++++|+.||+.++.|-.+|.|.+||+.++
T Consensus       101 ~ivi~Ts~ghvl~~d~~~nL~~~~-----~-------------ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~  162 (1206)
T KOG2079|consen  101 PIVIGTSHGHVLLSDMTGNLGPLH-----Q-------------NERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRA  162 (1206)
T ss_pred             eEEEEcCchhhhhhhhhcccchhh-----c-------------CCccCCcceeeEecCCCceeccccCCCcEEEEEccCC
Confidence            488899899999888865311000     0             1233579999999999999999999999999999999


Q ss_pred             ceeeEEEEeeccccC---eeEEEecCCCCceEEEEEeCCCcEEEEEcc
Q 001415          453 DEVRQHLEIDAHVGG---VNDIAFSHPNKQLCVITCGDDKTIKVWDAT  497 (1082)
Q Consensus       453 ~~~~~~~~~~~h~~~---V~~l~fs~dg~~~~l~s~s~d~~i~vwd~~  497 (1082)
                      +.++   .+..|..+   |..+.+..++.  .++++..-|.  +|...
T Consensus       163 k~l~---~i~e~~ap~t~vi~v~~t~~nS--~llt~D~~Gs--f~~lv  203 (1206)
T KOG2079|consen  163 KILK---VITEHGAPVTGVIFVGRTSQNS--KLLTSDTGGS--FWKLV  203 (1206)
T ss_pred             ccee---eeeecCCccceEEEEEEeCCCc--EEEEccCCCc--eEEEE
Confidence            8776   34444444   44444555555  5777776665  66543

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=96.90  E-value=0.0038  Score=68.76  Aligned_cols=93  Identities=9%  Similarity=0.103  Sum_probs=75.2

Q ss_pred             CCeeEEEEecCCCcEEEEEeCCCcEEEEecccceeeeeecccccCEE-EEEEeCCCCEEEEEeCCCcEEEEEcCCccccc
Q 001415          828 PAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRIT-GLAFSHALNVLVSSGADSQLCVWSSDGWEKQK  906 (1082)
Q Consensus       828 ~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~-~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~  906 (1082)
                      ..+..+.|+| .-.++|.+..+|.|-+..+. .+.+.++.-|...++ +++|.|||+.||.|-.||+|++-|+.++....
T Consensus        21 ~~i~~~ewnP-~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~   98 (665)
T KOG4640|consen   21 INIKRIEWNP-KMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLV   98 (665)
T ss_pred             cceEEEEEcC-ccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCcee
Confidence            4577899999 88999999999999999988 777888887777777 99999999999999999999999999976544


Q ss_pred             ceeeeccCCCCCCCCCCcEEEEc
Q 001415          907 NRFLQIPTGRTPTAQSDTRVQFH  929 (1082)
Q Consensus       907 ~~~~~~~~~~~~~~~~v~~~~fs  929 (1082)
                      .+.....       ..|..+-|+
T Consensus        99 ~~~~s~e-------~~is~~~w~  114 (665)
T KOG4640|consen   99 SFLFSVE-------TDISKGIWD  114 (665)
T ss_pred             ccccccc-------cchheeecc
Confidence            3211111       345666665

>smart00320 WD40 WD40 repeats

Probab=96.90  E-value=0.002  Score=43.88  Aligned_cols=39  Identities=33%  Similarity=0.559  Sum_probs=34.4

Q ss_pred             ceeeeeecccccCEEEEEEeCCCCEEEEEeCCCcEEEEE
Q 001415          860 DEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS  898 (1082)
Q Consensus       860 ~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd  898 (1082)
                      +++...+..|...|.++.|.+++.++++++.|+.+++|+
T Consensus         2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        2 GELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             cEEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence            345667778999999999999999999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>PF14727 PHTB1_N: PTHB1 N-terminus

Probab=96.86  E-value=0.39  Score=53.10  Aligned_cols=286  Identities=10%  Similarity=0.086  Sum_probs=145.8

Q ss_pred             CEEEEEeCCCeEEEEECCCcc-----eEEEEecCCCCCCcCeEEEc---C--CCCEEEEEECCCcEEEEEecCCc-----
Q 001415          587 NRFLAAGDDFSIKFWDMDSVQ-----LLTSIDADGGLPASPRIRFN---K--DGCLLAVSTNDNGIKILATSDGI-----  651 (1082)
Q Consensus       587 ~~l~~~~~dg~i~iwd~~~~~-----~~~~~~~~~~~~~i~~~~~s---~--dg~~l~~~~~dg~i~iwd~~~~~-----  651 (1082)
                      ..+++|+..|.++||+.....     .+-..+..   .+|..+...   +  +...||+ -.-..+.+|.+....     
T Consensus        38 d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~---~PILqv~~G~F~s~~~~~~LaV-LhP~kl~vY~v~~~~g~~~~  113 (418)
T PF14727_consen   38 DKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLK---DPILQVECGKFVSGSEDLQLAV-LHPRKLSVYSVSLVDGTVEH  113 (418)
T ss_pred             cEEEEeccccEEEEEccCCCCCCCccEEEEEecC---CcEEEEEeccccCCCCcceEEE-ecCCEEEEEEEEecCCCccc
Confidence            479999999999999985433     22222221   245555443   2  2334444 455777788763211     


Q ss_pred             ---cceeecccccccccccccccCCCCccccCCCCceeeeccCCceeEEEecccCCCCccccccccCcccccceeEEEEc
Q 001415          652 ---RLLRTFENLAYDASRTSENSKNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFT  728 (1082)
Q Consensus       652 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s  728 (1082)
                         -.+.....|.....  +..+..+.......-..+.+-+.||.+.+++-+...-.......-+        ...+.|.
T Consensus       114 g~~~~L~~~yeh~l~~~--a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~~ll--------PgPl~Y~  183 (418)
T PF14727_consen  114 GNQYQLELIYEHSLQRT--AYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPDFLL--------PGPLCYC  183 (418)
T ss_pred             CcEEEEEEEEEEecccc--eeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCCCCC--------CcCeEEe
Confidence               11122222222111  1111111111222346778889999999998765332222221222        2347888


Q ss_pred             cCCceeeecccCCeEEEeeccccccCCCCCcc----------cccCccccCCCCcceeecccCCCCCCCCccEEEeecCC
Q 001415          729 NSGNAILALASNAIHLLWKWQRTERNSSGKAT----------ASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKND  798 (1082)
Q Consensus       729 ~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg  798 (1082)
                      +....+++++.+..+.-|..+.-....+....          ...-.--|...-|+          .--.|..+.++...
T Consensus       184 ~~tDsfvt~sss~~l~~Yky~~La~~s~~~~~~~~~~~~~~~~k~l~~dWs~nlGE----------~~l~i~v~~~~~~~  253 (418)
T PF14727_consen  184 PRTDSFVTASSSWTLECYKYQDLASASEASSRQSGTEQDISSGKKLNPDWSFNLGE----------QALDIQVVRFSSSE  253 (418)
T ss_pred             ecCCEEEEecCceeEEEecHHHhhhccccccccccccccccccccccceeEEECCc----------eeEEEEEEEcCCCC
Confidence            88889999999989988876543222111100          00001112222121          11123333444444


Q ss_pred             CeEEEeeCCeEEEEecCCCeeEEEECCCCCCeeEEE-E------ecCCCcEEEEEeCCCcEEEEecccceeeeeeccccc
Q 001415          799 SYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLA-F------HPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSK  871 (1082)
Q Consensus       799 ~~l~~~sdg~i~iwd~~~~~~~~~~~~~~~~v~~l~-~------sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~  871 (1082)
                      ..+++-+...+.+.+. +|......+- +....|++ |      .+..+..+++++.++++.||.=.  +++...+....
T Consensus       254 ~~IvvLger~Lf~l~~-~G~l~~~krL-d~~p~~~~~Y~~~~~~~~~~~~~llV~t~t~~LlVy~d~--~L~WsA~l~~~  329 (418)
T PF14727_consen  254 SDIVVLGERSLFCLKD-NGSLRFQKRL-DYNPSCFCPYRVPWYNEPSTRLNLLVGTHTGTLLVYEDT--TLVWSAQLPHV  329 (418)
T ss_pred             ceEEEEecceEEEEcC-CCeEEEEEec-CCceeeEEEEEeecccCCCCceEEEEEecCCeEEEEeCC--eEEEecCCCCC
Confidence            4566666667777765 3444433332 22222221 2      12122357889999999998633  33333222223


Q ss_pred             CEEEEEE---eCCCCEEEEEeCCCcEEEEEcCC
Q 001415          872 RITGLAF---SHALNVLVSSGADSQLCVWSSDG  901 (1082)
Q Consensus       872 ~V~~l~~---s~d~~~l~s~s~Dg~i~vwd~~~  901 (1082)
                      +| ++..   ..-...|++-+.+|.+.+-=+-+
T Consensus       330 PV-al~v~~~~~~~G~IV~Ls~~G~L~v~YLGT  361 (418)
T PF14727_consen  330 PV-ALSVANFNGLKGLIVSLSDEGQLSVSYLGT  361 (418)
T ss_pred             CE-EEEecccCCCCceEEEEcCCCcEEEEEeCC
Confidence            33 3333   23345788889999998877766

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=96.69  E-value=0.33  Score=49.26  Aligned_cols=187  Identities=9%  Similarity=0.106  Sum_probs=114.1

Q ss_pred             CCccEEEeecCCCeEEEee-C--CeEEEEecCCCeeEEEECCCCC-CeeEEEEecCCCcEEEEEeCCCcEEEEeccccee
Q 001415          787 EAVPCFALSKNDSYVMSAS-G--GKISLFNMMTFKTMATFMPPPP-AATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEV  862 (1082)
Q Consensus       787 ~~i~~l~~s~dg~~l~~~s-d--g~i~iwd~~~~~~~~~~~~~~~-~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~  862 (1082)
                      .....+.|..+|.++-+.+ -  ..|+.+|+.+++......-... ---.++..  +.++....-.++...+||..+.+.
T Consensus        45 aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~--~d~l~qLTWk~~~~f~yd~~tl~~  122 (264)
T PF05096_consen   45 AFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL--GDKLYQLTWKEGTGFVYDPNTLKK  122 (264)
T ss_dssp             -EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE--TTEEEEEESSSSEEEEEETTTTEE
T ss_pred             ccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEE--CCEEEEEEecCCeEEEEccccceE
Confidence            3345788878888777665 2  4699999999988766543322 22344554  345666677899999999999988


Q ss_pred             eeeecccccCEEEEEEeCCCCEEEEEeCCCcEEEEEcCCcccccceeeeccCCCCCCCCCCcEEEEcCCCcEEEEE-ecC
Q 001415          863 KSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HET  941 (1082)
Q Consensus       863 ~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~-~d~  941 (1082)
                      +.++.- .+.=+.++  .|++.|+..+....|.++|.++.+......+. ..+..  ...+..+.|- +|...|=. ...
T Consensus       123 ~~~~~y-~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~-~~g~p--v~~LNELE~i-~G~IyANVW~td  195 (264)
T PF05096_consen  123 IGTFPY-PGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVT-DNGRP--VSNLNELEYI-NGKIYANVWQTD  195 (264)
T ss_dssp             EEEEE--SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-E-ETTEE-----EEEEEEE-TTEEEEEETTSS
T ss_pred             EEEEec-CCcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEE-ECCEE--CCCcEeEEEE-cCEEEEEeCCCC
Confidence            888763 35567777  57778888777788999998875543322222 11111  1344556665 55544443 456


Q ss_pred             eEEEEEccCcceeeeeccC----------CC---CcceeEEEEcCCCceEEEee
Q 001415          942 QLAIFETTKLECVKQWVPR----------ES---SAPITHATFSCDSQLVYACF  982 (1082)
Q Consensus       942 ~i~iwd~~~~~~~~~~~~~----------~h---~~~i~~l~~s~dg~~l~t~s  982 (1082)
                      .|...|..+|+.+..+...          .+   ..-.+.|++.|....|...+
T Consensus       196 ~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG  249 (264)
T PF05096_consen  196 RIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG  249 (264)
T ss_dssp             EEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred             eEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence            7888889999887665321          01   34578999988766554443

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=96.58  E-value=0.0076  Score=58.14  Aligned_cols=108  Identities=12%  Similarity=0.011  Sum_probs=59.5

Q ss_pred             EEEEeCCCcEEEEEcCCcccccceeeeccCCCCCCCCCCcEEEEcCCCcEEEE-EecCeEEEEEccCcceeeeeccCCCC
Q 001415          885 LVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFETTKLECVKQWVPRESS  963 (1082)
Q Consensus       885 l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~h~  963 (1082)
                      |...+.||.|+-+++...+...........+         ....- -+..+++ +.+|.|++|...-........+.+-.
T Consensus        33 l~~~sa~~~v~~~~~~k~k~s~rse~~~~e~---------~~v~~-~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e  102 (238)
T KOG2444|consen   33 LRATSADGLVRERKVRKHKESCRSERFIDEG---------QRVVT-ASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEE  102 (238)
T ss_pred             hccccCCcccccchhhhhhhhhhhhhhhhcc---------eeecc-cCceEEeecccceEEEecCCccchHHHhhhcccc
Confidence            4455678888888876633211111111111         11111 2333444 68899999987622222211111212


Q ss_pred             cceeEEEEcCCCceEEEeecCCcEEEEecCCceeeeeeC
Q 001415          964 APITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRIN 1002 (1082)
Q Consensus       964 ~~i~~l~~s~dg~~l~t~s~dg~v~vwd~~~~~~~~~~~ 1002 (1082)
                      .....+.--.++.+..+++.||.|+.|++.-++.+....
T Consensus       103 ~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g  141 (238)
T KOG2444|consen  103 SIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVG  141 (238)
T ss_pred             cceeccccccccceeEEeccCCceeeeccccCceeeeec
Confidence            222333333456688889999999999999998887766

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=96.56  E-value=0.49  Score=49.96  Aligned_cols=159  Identities=11%  Similarity=0.078  Sum_probs=81.0

Q ss_pred             CCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEecccceeeeeecccccCEEEEEEeCCCCEEEEEeCCCcEEEEEc-CCc
Q 001415          824 MPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSS-DGW  902 (1082)
Q Consensus       824 ~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~-~~~  902 (1082)
                      ....+.+..+..++ ++++++++.......-||-....-...-+.-..+|.+|.|+||+.+.+.+ ..|.|++=+. ...
T Consensus       141 ~~~~gs~~~~~r~~-dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~  218 (302)
T PF14870_consen  141 SETSGSINDITRSS-DGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDG  218 (302)
T ss_dssp             -S----EEEEEE-T-TS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEE
T ss_pred             cCCcceeEeEEECC-CCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEe-CCcEEEEccCCCCc
Confidence            34456788888898 89999888655455567654321222223346789999999998876654 7888887762 221


Q ss_pred             ccccceeeeccCCCCCCCCCCcEEEEcCCCcEEEEEecCeEEEEEccCcceeeeecc-CCCCcceeEEEEcCCCceEEEe
Q 001415          903 EKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWVP-RESSAPITHATFSCDSQLVYAC  981 (1082)
Q Consensus       903 ~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~~d~~i~iwd~~~~~~~~~~~~-~~h~~~i~~l~~s~dg~~l~t~  981 (1082)
                      +.-.........    ..-.+..++|.+++...+++..|.+. ...+.|+.-..-.. ..-......|.|.++.+-++.|
T Consensus       219 ~~w~~~~~~~~~----~~~~~ld~a~~~~~~~wa~gg~G~l~-~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~gf~lG  293 (302)
T PF14870_consen  219 ETWSEPIIPIKT----NGYGILDLAYRPPNEIWAVGGSGTLL-VSTDGGKTWQKDRVGENVPSNLYRIVFVNPDKGFVLG  293 (302)
T ss_dssp             EEE---B-TTSS------S-EEEEEESSSS-EEEEESTT-EE-EESSTTSS-EE-GGGTTSSS---EEEEEETTEEEEE-
T ss_pred             cccccccCCccc----CceeeEEEEecCCCCEEEEeCCccEE-EeCCCCccceECccccCCCCceEEEEEcCCCceEEEC
Confidence            110011111111    11346889999999988888777543 34455554333321 1224567888998776666655


Q ss_pred             ecCCcEEEE
Q 001415          982 FLDATVCVF  990 (1082)
Q Consensus       982 s~dg~v~vw  990 (1082)
                       .+|.+--|
T Consensus       294 -~~G~ll~~  301 (302)
T PF14870_consen  294 -QDGVLLRY  301 (302)
T ss_dssp             -STTEEEEE
T ss_pred             -CCcEEEEe
Confidence             67876544

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=96.55  E-value=0.35  Score=50.30  Aligned_cols=148  Identities=16%  Similarity=0.095  Sum_probs=90.8

Q ss_pred             CCccEEEeecCCCeEEEee--CCe--EEEEecCCCeeEEEECCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEe-cccce
Q 001415          787 EAVPCFALSKNDSYVMSAS--GGK--ISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYN-VRVDE  861 (1082)
Q Consensus       787 ~~i~~l~~s~dg~~l~~~s--dg~--i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd-~~~~~  861 (1082)
                      ..+.+.++|+||+.+|...  ++.  +.++...  ....... ....++.-.|++ ++.+.+....+...+++. ..+++
T Consensus        24 ~~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~--~~~~~~~-~g~~l~~PS~d~-~g~~W~v~~~~~~~~~~~~~~~g~   99 (253)
T PF10647_consen   24 YDVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAG--GPVRPVL-TGGSLTRPSWDP-DGWVWTVDDGSGGVRVVRDSASGT   99 (253)
T ss_pred             ccccceEECCCCCeEEEEEEcCCCCEEEEEcCC--Ccceeec-cCCccccccccC-CCCEEEEEcCCCceEEEEecCCCc
Confidence            3688999999999888766  444  5555443  3333322 233788889999 677777777677777774 23332


Q ss_pred             ee-eeec--ccccCEEEEEEeCCCCEEEEEe---CCCcEEEEEcCCcccccceee-eccCCCCCCCCCCcEEEEcCCCcE
Q 001415          862 VK-SKLK--GHSKRITGLAFSHALNVLVSSG---ADSQLCVWSSDGWEKQKNRFL-QIPTGRTPTAQSDTRVQFHQDQIH  934 (1082)
Q Consensus       862 ~~-~~l~--~h~~~V~~l~~s~d~~~l~s~s---~Dg~i~vwd~~~~~~~~~~~~-~~~~~~~~~~~~v~~~~fspdg~~  934 (1082)
                      .. ..+.  .-.+.|+++.+||||..+|...   .++.|.+=-+..........+ ....-.......+..++|.+++.+
T Consensus       100 ~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L  179 (253)
T PF10647_consen  100 GEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTL  179 (253)
T ss_pred             ceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCEE
Confidence            21 1121  1112899999999999988765   356777776654332211111 111111111256789999999998


Q ss_pred             EEEE
Q 001415          935 FLVV  938 (1082)
Q Consensus       935 l~~~  938 (1082)
                      ++..
T Consensus       180 ~V~~  183 (253)
T PF10647_consen  180 VVLG  183 (253)
T ss_pred             EEEe
Confidence            8874

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=96.48  E-value=1.3  Score=48.30  Aligned_cols=58  Identities=21%  Similarity=0.193  Sum_probs=35.3

Q ss_pred             CCEEEEEeCCCeEEEEECCCcceE-EEEecCCCCC-CcCeEEEcCCCCEEEEEECCCcEE
Q 001415          586 KNRFLAAGDDFSIKFWDMDSVQLL-TSIDADGGLP-ASPRIRFNKDGCLLAVSTNDNGIK  643 (1082)
Q Consensus       586 ~~~l~~~~~dg~i~iwd~~~~~~~-~~~~~~~~~~-~i~~~~~s~dg~~l~~~~~dg~i~  643 (1082)
                      +.+|++.-..+.|....+.++..+ .....-.... .+..+++.|||.+.++...+|.|.
T Consensus       271 g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pDG~Lyv~~d~~G~iy  330 (331)
T PF07995_consen  271 GDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPDGALYVSDDSDGKIY  330 (331)
T ss_dssp             TEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETTSEEEEEE-TTTTEE
T ss_pred             CcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCCCeEEEEECCCCeEe
Confidence            445555555677877777644332 2222112222 578999999999888888788764

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>PHA02713 hypothetical protein; Provisional

Probab=96.48  E-value=0.24  Score=58.34  Aligned_cols=199  Identities=13%  Similarity=0.105  Sum_probs=104.5

Q ss_pred             CCcEEEEEeCC------CcEEEEecccce--eeeeecccccCEEEEEEeCCCCEEEEEeCCC-----cEEEEEcCCcccc
Q 001415          839 DNNIIAIGMDD------SSIQIYNVRVDE--VKSKLKGHSKRITGLAFSHALNVLVSSGADS-----QLCVWSSDGWEKQ  905 (1082)
Q Consensus       839 ~~~~lasg~~d------g~v~iwd~~~~~--~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg-----~i~vwd~~~~~~~  905 (1082)
                      ++.++++|+.+      ..+..||..++.  .+..+....... +++ .-+|+..+.||.++     ++..||..+.+-.
T Consensus       303 ~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~-~~~-~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~  380 (557)
T PHA02713        303 DNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRF-SLA-VIDDTIYAIGGQNGTNVERTIECYTMGDDKWK  380 (557)
T ss_pred             CCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhce-eEE-EECCEEEEECCcCCCCCCceEEEEECCCCeEE
Confidence            66788888754      347788877653  222222111112 222 33688888888764     4788998875432


Q ss_pred             cceeeeccCCCCCCCCCCcEEEEcCCCcEEEEE-ec-----------------------CeEEEEEccCcceeeeeccCC
Q 001415          906 KNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HE-----------------------TQLAIFETTKLECVKQWVPRE  961 (1082)
Q Consensus       906 ~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~-~d-----------------------~~i~iwd~~~~~~~~~~~~~~  961 (1082)
                      ....+....      .....+  .-+|+..++| .+                       ..+..||..+.+....-..  
T Consensus       381 ~~~~mp~~r------~~~~~~--~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m--  450 (557)
T PHA02713        381 MLPDMPIAL------SSYGMC--VLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNF--  450 (557)
T ss_pred             ECCCCCccc------ccccEE--EECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCCC--
Confidence            211111111      111222  2366666664 22                       2477788776654322211  


Q ss_pred             CCcceeEEEEcCCCceEEEeecC------CcEEEEecCC-ceeeeeeCCCeecCCCCCCCCceeeEEEEeCCCCCeEEEE
Q 001415          962 SSAPITHATFSCDSQLVYACFLD------ATVCVFSAAN-LKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALG 1034 (1082)
Q Consensus       962 h~~~i~~l~~s~dg~~l~t~s~d------g~v~vwd~~~-~~~~~~~~~~~~~~~gh~~~~v~~~~~~~~~~d~~~l~s~ 1034 (1082)
                      .......-+..-+|+..+.|+.+      ..|..||..+ .+-. .+..   .|..     .....++-.  ++.+.++|
T Consensus       451 ~~~r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~-~~~~---m~~~-----r~~~~~~~~--~~~iyv~G  519 (557)
T PHA02713        451 WTGTIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWE-LITT---TESR-----LSALHTILH--DNTIMMLH  519 (557)
T ss_pred             CcccccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCee-Eccc---cCcc-----cccceeEEE--CCEEEEEe
Confidence            11111212223367777777654      2467888887 3322 1111   1111     111122222  57899999


Q ss_pred             ecCC--cEEEEccCCCCCccccCCCCCCCC
Q 001415         1035 LSDG--GVHVFEPLESEGKWGVPPPVDNGS 1062 (1082)
Q Consensus      1035 ~~dg--~v~vW~~~~~~~~~~~~~~~~~~~ 1062 (1082)
                      |.||  .+-.+|+.+.+  |..-.|-...+
T Consensus       520 g~~~~~~~e~yd~~~~~--W~~~~~~~~~~  547 (557)
T PHA02713        520 CYESYMLQDTFNVYTYE--WNHICHQHSNS  547 (557)
T ss_pred             eecceeehhhcCccccc--ccchhhhcCCc
Confidence            9998  78888888866  77666655444

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=96.47  E-value=3.3  Score=50.21  Aligned_cols=216  Identities=14%  Similarity=0.071  Sum_probs=115.0

Q ss_pred             CCeEEEEeCCCeEEEEEccCCceeeEEEEeecccc-----CeeEEEec----------------CCCCceEEEEEeCCCc
Q 001415          432 GSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVG-----GVNDIAFS----------------HPNKQLCVITCGDDKT  490 (1082)
Q Consensus       432 g~~las~~~d~~v~iwd~~~~~~~~~~~~~~~h~~-----~V~~l~fs----------------~dg~~~~l~s~s~d~~  490 (1082)
                      +..|..++.++.|.-.|..+|+.+-+...-.....     ....+++-                ..+.  .++.++.|+.
T Consensus       194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~--rV~~~T~Dg~  271 (764)
T TIGR03074       194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCAR--RIILPTSDAR  271 (764)
T ss_pred             CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCC--EEEEecCCCe
Confidence            55666677777888888888876653211000000     01112221                1233  4777888999


Q ss_pred             EEEEEccCCceeEEeecCCcCeE-------------EEeeeecCCceEEEEecC----------CCcEEEEecCCCCcee
Q 001415          491 IKVWDATNGAKQYIFEGHEAPVY-------------SVCPHHKENIQFIFSTAL----------DGKIKAWLYDNLGSRV  547 (1082)
Q Consensus       491 i~vwd~~~~~~~~~~~~h~~~v~-------------~~~~~~~~~~~~l~s~~~----------dg~i~iwd~~~~~~~~  547 (1082)
                      +.-.|.++|+.+..+.. .+.|.             .+.-.|--.+..++.|+.          +|.|+-+|.++++...
T Consensus       272 LiALDA~TGk~~W~fg~-~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W  350 (764)
T TIGR03074       272 LIALDADTGKLCEDFGN-NGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVW  350 (764)
T ss_pred             EEEEECCCCCEEEEecC-CCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEee
Confidence            99999999999877642 22210             000001001135566642          6889999999999887


Q ss_pred             eecCCCCceEEEEEccCCCeeeecccccceeEEEecCCCCEEEEE------------------eCCCeEEEEECCCcceE
Q 001415          548 DYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAA------------------GDDFSIKFWDMDSVQLL  609 (1082)
Q Consensus       548 ~~~~~~~~v~~~~~s~d~~~~~~~~~~~~i~~~~~~~~~~~l~~~------------------~~dg~i~iwd~~~~~~~  609 (1082)
                      .+..........  .+.+. .+.......-...+++++...++.+                  ...+.|.-.|.+||+..
T Consensus       351 ~~~~g~p~~~~~--~~~g~-~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~~TGk~~  427 (764)
T TIGR03074       351 AWDPGNPDPTAP--PAPGE-TYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDATTGKER  427 (764)
T ss_pred             EEecCCCCcccC--CCCCC-EeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEEeCCCCceE
Confidence            765321111100  01111 1111111122233444443333321                  12456777899999988


Q ss_pred             EEEecCCCC-------CCcCeEEEcC-CCC---EEEEEECCCcEEEEEecCCccc
Q 001415          610 TSIDADGGL-------PASPRIRFNK-DGC---LLAVSTNDNGIKILATSDGIRL  653 (1082)
Q Consensus       610 ~~~~~~~~~-------~~i~~~~~s~-dg~---~l~~~~~dg~i~iwd~~~~~~~  653 (1082)
                      ..++...+.       ....-+.+.. +|+   .++.++.+|.+.++|..+++.+
T Consensus       428 W~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l  482 (764)
T TIGR03074       428 WVFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPI  482 (764)
T ss_pred             EEecccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEE
Confidence            877652221       0111122322 563   7889999999999999999543

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>PRK10115 protease 2; Provisional

Probab=96.45  E-value=1.8  Score=52.31  Aligned_cols=196  Identities=10%  Similarity=0.041  Sum_probs=100.7

Q ss_pred             CCccEEEeecCCCeEEEeeC--C----eEEEEecCCCeeEEEECCCCCCeeEEEEecCCCcEEEEE-eCC-----CcEEE
Q 001415          787 EAVPCFALSKNDSYVMSASG--G----KISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIG-MDD-----SSIQI  854 (1082)
Q Consensus       787 ~~i~~l~~s~dg~~l~~~sd--g----~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasg-~~d-----g~v~i  854 (1082)
                      -.+..+.+||||++|+.+.|  |    .|++.|+.++..+......  .-..++|++ |++.|+.. ..+     ..|+.
T Consensus       127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~--~~~~~~w~~-D~~~~~y~~~~~~~~~~~~v~~  203 (686)
T PRK10115        127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDN--VEPSFVWAN-DSWTFYYVRKHPVTLLPYQVWR  203 (686)
T ss_pred             EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccC--cceEEEEee-CCCEEEEEEecCCCCCCCEEEE
Confidence            34667889999999998853  3    3889999887643222111  125699999 55544443 322     36788


Q ss_pred             Eecccc--eeeeeecccccCEE-EEEEeCCCCEEEEEeC---CCcEEEEEcCCcccccceeeeccCCCCCCCCCCcEEEE
Q 001415          855 YNVRVD--EVKSKLKGHSKRIT-GLAFSHALNVLVSSGA---DSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQF  928 (1082)
Q Consensus       855 wd~~~~--~~~~~l~~h~~~V~-~l~~s~d~~~l~s~s~---Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~f  928 (1082)
                      +++.++  +....+........ .+..+.|+++++..+.   ++.+.+|+...........+....+      ....+. 
T Consensus       204 h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~------~~~~~~-  276 (686)
T PRK10115        204 HTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKD------HEYSLD-  276 (686)
T ss_pred             EECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCCC------CEEEEE-
Confidence            888877  33333433333333 3344558887665443   3568888853311111111221111      112222 


Q ss_pred             cCCCcEEEEEec--C--eEEEEEccCcceeeeeccCCCCcceeEEEEcCCCceEEEeecCCcEEEEecC
Q 001415          929 HQDQIHFLVVHE--T--QLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAA  993 (1082)
Q Consensus       929 spdg~~l~~~~d--~--~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~dg~~l~t~s~dg~v~vwd~~  993 (1082)
                      +..+.+++.+..  .  .|...++........+........|..+.++ .+.++++...+|.-+++-+.
T Consensus       277 ~~~~~ly~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~-~~~l~~~~~~~g~~~l~~~~  344 (686)
T PRK10115        277 HYQHRFYLRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLF-TDWLVVEERQRGLTSLRQIN  344 (686)
T ss_pred             eCCCEEEEEEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEE-CCEEEEEEEeCCEEEEEEEc
Confidence            223333333322  2  3433344421122233322123468888887 33566666677776555443

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.45  E-value=0.047  Score=59.17  Aligned_cols=144  Identities=10%  Similarity=0.114  Sum_probs=97.8

Q ss_pred             EEEEEeCCCcEEEEecccceeeeeecccccCEEEEEEeCCCCE-------EEEEeCCCcEEEEEcCCcccccceeeeccC
Q 001415          842 IIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNV-------LVSSGADSQLCVWSSDGWEKQKNRFLQIPT  914 (1082)
Q Consensus       842 ~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~-------l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~  914 (1082)
                      +|..+.....++-.|+..|+.+.+++-|.. |+-+.+.|+.+.       -+.|=.|..|.-||.+-....   .+....
T Consensus       348 il~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~---kl~~~q  423 (644)
T KOG2395|consen  348 ILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKN---KLAVVQ  423 (644)
T ss_pred             EeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcc---eeeeee
Confidence            444555667899999999999999998876 888888887642       123445777899998743221   222222


Q ss_pred             CCCC-CCCCCcEEEEcCCCcEEEEEecCeEEEEEccCcceeeeeccCCCCcceeEEEEcCCCceEEEeecCCcEEEEec
Q 001415          915 GRTP-TAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSA  992 (1082)
Q Consensus       915 ~~~~-~~~~v~~~~fspdg~~l~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~dg~~l~t~s~dg~v~vwd~  992 (1082)
                      ++.- ....-.|.+-..+|..++.+.+|.|++||- .+....+..+ +-..+|..|..+.||++|+..+ +.++.+-++
T Consensus       424 ~kqy~~k~nFsc~aTT~sG~IvvgS~~GdIRLYdr-i~~~AKTAlP-gLG~~I~hVdvtadGKwil~Tc-~tyLlLi~t  499 (644)
T KOG2395|consen  424 SKQYSTKNNFSCFATTESGYIVVGSLKGDIRLYDR-IGRRAKTALP-GLGDAIKHVDVTADGKWILATC-KTYLLLIDT  499 (644)
T ss_pred             ccccccccccceeeecCCceEEEeecCCcEEeehh-hhhhhhhccc-ccCCceeeEEeeccCcEEEEec-ccEEEEEEE
Confidence            2221 113345666666777666689999999997 5544444332 5578999999999999988665 666666654

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=96.42  E-value=0.14  Score=44.06  Aligned_cols=102  Identities=16%  Similarity=0.146  Sum_probs=64.9

Q ss_pred             ceEEEEe---cCCCeEEEEEcCCCcEEEEEccccceeeeeceeeeccCCCCcccccccccCCCCceeEEEEecCCCeEEE
Q 001415          361 PMSMDFH---PVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGV  437 (1082)
Q Consensus       361 v~~~~~s---pdg~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las  437 (1082)
                      |++|++.   .||+.-|++|+.|..|+||+=+  +.+.+                    -..++.|++++-... ..++.
T Consensus         2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~--e~~~E--------------------i~e~~~v~~L~~~~~-~~F~Y   58 (111)
T PF14783_consen    2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD--EIVAE--------------------ITETDKVTSLCSLGG-GRFAY   58 (111)
T ss_pred             eeEEEEEecCCCCcceEEEecCCcEEEEEeCC--cEEEE--------------------EecccceEEEEEcCC-CEEEE
Confidence            5566554   4666669999999999999854  33321                    123457888887766 56889


Q ss_pred             EeCCCeEEEEEccCCceeeEEEEeeccccCeeEEEec---CCCCceEEEEEeCCCcEE
Q 001415          438 AYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFS---HPNKQLCVITCGDDKTIK  492 (1082)
Q Consensus       438 ~~~d~~v~iwd~~~~~~~~~~~~~~~h~~~V~~l~fs---~dg~~~~l~s~s~d~~i~  492 (1082)
                      +..+|+|-+|+-...  +-   ..+.. ..+.++++.   .||.. -|++|-.+|.|-
T Consensus        59 ~l~NGTVGvY~~~~R--lW---RiKSK-~~~~~~~~~D~~gdG~~-eLI~GwsnGkve  109 (111)
T PF14783_consen   59 ALANGTVGVYDRSQR--LW---RIKSK-NQVTSMAFYDINGDGVP-ELIVGWSNGKVE  109 (111)
T ss_pred             EecCCEEEEEeCcce--ee---eeccC-CCeEEEEEEcCCCCCce-EEEEEecCCeEE
Confidence            999999999976431  22   22222 235555543   33433 578887777663

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=96.40  E-value=1.2  Score=48.63  Aligned_cols=243  Identities=14%  Similarity=0.119  Sum_probs=118.8

Q ss_pred             ccEEEeecCCCeEEEeeCCeEEEEecCCCee---EEEEC----CCCCCeeEEEEecC---CCcEEEEEeCC--------C
Q 001415          789 VPCFALSKNDSYVMSASGGKISLFNMMTFKT---MATFM----PPPPAATFLAFHPQ---DNNIIAIGMDD--------S  850 (1082)
Q Consensus       789 i~~l~~s~dg~~l~~~sdg~i~iwd~~~~~~---~~~~~----~~~~~v~~l~~sp~---~~~~lasg~~d--------g  850 (1082)
                      .+.|+|.|||+++++-..|.|++++ ..+..   +..+.    ........++++|+   ++.+.++.+..        .
T Consensus         4 P~~~a~~pdG~l~v~e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~~~   82 (331)
T PF07995_consen    4 PRSMAFLPDGRLLVAERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDNDN   82 (331)
T ss_dssp             EEEEEEETTSCEEEEETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSEEE
T ss_pred             ceEEEEeCCCcEEEEeCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCcce
Confidence            5689999999998877789999999 44443   22331    23446789999993   24444444421        2


Q ss_pred             cEEEEecccc-------eee-eeecc---cccCEEEEEEeCCCCEEEEEeCCCc-------------EEEEEcCCccccc
Q 001415          851 SIQIYNVRVD-------EVK-SKLKG---HSKRITGLAFSHALNVLVSSGADSQ-------------LCVWSSDGWEKQK  906 (1082)
Q Consensus       851 ~v~iwd~~~~-------~~~-~~l~~---h~~~V~~l~~s~d~~~l~s~s~Dg~-------------i~vwd~~~~~~~~  906 (1082)
                      .|.-|....+       +.+ ..+..   ....-..|+|.|||.+.++.+..+.             |.-.+.+. ....
T Consensus        83 ~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~~~~~~~~~~~~~G~ilri~~dG-~~p~  161 (331)
T PF07995_consen   83 RVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGGNDDNAQDPNSLRGKILRIDPDG-SIPA  161 (331)
T ss_dssp             EEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TTTGGGGCSTTSSTTEEEEEETTS-SB-T
T ss_pred             eeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCCCcccccccccccceEEEecccC-cCCC
Confidence            3444444332       111 12222   2233466999999988777765443             21122111 0000


Q ss_pred             ceeeeccCCCC-----CCCCCCcEEEEcCC-CcEEEE--EecCeEEEEEccCccee------------------------
Q 001415          907 NRFLQIPTGRT-----PTAQSDTRVQFHQD-QIHFLV--VHETQLAIFETTKLECV------------------------  954 (1082)
Q Consensus       907 ~~~~~~~~~~~-----~~~~~v~~~~fspd-g~~l~~--~~d~~i~iwd~~~~~~~------------------------  954 (1082)
                      ........+..     ........++|.|. |.+.++  +.+..=.|..+..|.-.                        
T Consensus       162 dnP~~~~~~~~~~i~A~GlRN~~~~~~d~~tg~l~~~d~G~~~~dein~i~~G~nYGWP~~~~~~~~~~~~~~~~~~~~~  241 (331)
T PF07995_consen  162 DNPFVGDDGADSEIYAYGLRNPFGLAFDPNTGRLWAADNGPDGWDEINRIEPGGNYGWPYCEGGPKYSGPPIGDAPSCPG  241 (331)
T ss_dssp             TSTTTTSTTSTTTEEEE--SEEEEEEEETTTTEEEEEEE-SSSSEEEEEE-TT-B--TTTBSSSCSTTSS-ECTGSS-TT
T ss_pred             CCccccCCCceEEEEEeCCCccccEEEECCCCcEEEEccCCCCCcEEEEeccCCcCCCCCCcCCCCCCCCccccccCCCC
Confidence            00000000000     00022367899999 887776  33433233323222210                        


Q ss_pred             ---eeeccCCCCcceeEEEEcC-------CCceEEEeecCCcEEEEecCCceeeeeeCCCeecCCCCCCCCceeeEEEEe
Q 001415          955 ---KQWVPRESSAPITHATFSC-------DSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAH 1024 (1082)
Q Consensus       955 ---~~~~~~~h~~~i~~l~~s~-------dg~~l~t~s~dg~v~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~~~~~ 1024 (1082)
                         ..+.. .+...++.+.|-.       .|.++++.-..+.|....+..+..+....  .+. .   ....+++.+.+.
T Consensus       242 ~~~P~~~~-~~~~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~--~~~-~---~~~~r~~~v~~~  314 (331)
T PF07995_consen  242 FVPPVFAY-PPHSAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEE--EFL-G---GFGGRPRDVAQG  314 (331)
T ss_dssp             S---SEEE-TTT--EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEE--EEC-T---TSSS-EEEEEEE
T ss_pred             cCccceee-cCccccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceE--Ecc-c---cCCCCceEEEEc
Confidence               00001 1235566677654       44566665556677777776443332211  111 1   122356789999


Q ss_pred             CCCCCeEEEEecCCcEE
Q 001415         1025 PQEPNEFALGLSDGGVH 1041 (1082)
Q Consensus      1025 ~~d~~~l~s~~~dg~v~ 1041 (1082)
                      | ||.+.++.+.+|.|.
T Consensus       315 p-DG~Lyv~~d~~G~iy  330 (331)
T PF07995_consen  315 P-DGALYVSDDSDGKIY  330 (331)
T ss_dssp             T-TSEEEEEE-TTTTEE
T ss_pred             C-CCeEEEEECCCCeEe
Confidence            9 689888888888874

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=96.28  E-value=0.51  Score=52.55  Aligned_cols=161  Identities=14%  Similarity=0.172  Sum_probs=92.9

Q ss_pred             CCeeEEEEecCCCcEEEEEe--CCCcEEEEecccceeeeeecccccCEEEEEEeCC----CCEEEEEeCCCcEEEEEcCC
Q 001415          828 PAATFLAFHPQDNNIIAIGM--DDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHA----LNVLVSSGADSQLCVWSSDG  901 (1082)
Q Consensus       828 ~~v~~l~~sp~~~~~lasg~--~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d----~~~l~s~s~Dg~i~vwd~~~  901 (1082)
                      .++..++|.. +.+.+.+.-  .+|.+++=|   .+.+..|    ..|.++.|+|-    -..|...-....|.||.+..
T Consensus        20 HPvhGlaWTD-GkqVvLT~L~l~~gE~kfGd---s~viGqF----EhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~   91 (671)
T PF15390_consen   20 HPVHGLAWTD-GKQVVLTDLQLHNGEPKFGD---SKVIGQF----EHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCP   91 (671)
T ss_pred             ccccceEecC-CCEEEEEeeeeeCCccccCC---ccEeecc----ceeeeeeecCcccCCCCceEEEeccceEEEEEecc
Confidence            3577888885 444554432  233333322   2233444    34889999985    33455566778899999874


Q ss_pred             cccccceee--eccCCCCCCCCCCcEEEEcCCCcEEEEE-ecCeEEEEEccCcceeeeeccCCCCcceeEEEEcCCCceE
Q 001415          902 WEKQKNRFL--QIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLV  978 (1082)
Q Consensus       902 ~~~~~~~~~--~~~~~~~~~~~~v~~~~fspdg~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~dg~~l  978 (1082)
                      ......+.+  +.-+...+...-...+.|+|....|++- ....-.++++......-.... ...+.|.|.||.+||..|
T Consensus        92 s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi-~~~G~IhCACWT~DG~RL  170 (671)
T PF15390_consen   92 STTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADI-KTSGLIHCACWTKDGQRL  170 (671)
T ss_pred             CccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCceEEEec-cCCceEEEEEecCcCCEE
Confidence            322222222  2211111111223578899999999883 333334455544333333333 236789999999999988


Q ss_pred             EEeecC-CcEEEEecCCcee
Q 001415          979 YACFLD-ATVCVFSAANLKL  997 (1082)
Q Consensus       979 ~t~s~d-g~v~vwd~~~~~~  997 (1082)
                      +++-.. =.-+|||-....+
T Consensus       171 VVAvGSsLHSyiWd~~qKtL  190 (671)
T PF15390_consen  171 VVAVGSSLHSYIWDSAQKTL  190 (671)
T ss_pred             EEEeCCeEEEEEecCchhhh
Confidence            766432 2468998766543

>smart00320 WD40 WD40 repeats

Probab=96.27  E-value=0.011  Score=40.06  Aligned_cols=38  Identities=26%  Similarity=0.470  Sum_probs=33.0

Q ss_pred             eeEEEECCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEe
Q 001415          818 KTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYN  856 (1082)
Q Consensus       818 ~~~~~~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd  856 (1082)
                      ++...+..|...+.++.|.+ ++.++++++.|+.+++|+
T Consensus         3 ~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        3 ELLKTLKGHTGPVTSVAFSP-DGKYLASASDDGTIKLWD   40 (40)
T ss_pred             EEEEEEEecCCceeEEEECC-CCCEEEEecCCCeEEEcC
Confidence            45566677888999999999 778999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=96.24  E-value=0.55  Score=55.14  Aligned_cols=235  Identities=9%  Similarity=0.070  Sum_probs=129.6

Q ss_pred             cCCCeEEEee-C------CeEEEEecCCCeeEEEECC-CCCCeeEEEEecCCCcEEEEEeCC-C-----cEEEEecccce
Q 001415          796 KNDSYVMSAS-G------GKISLFNMMTFKTMATFMP-PPPAATFLAFHPQDNNIIAIGMDD-S-----SIQIYNVRVDE  861 (1082)
Q Consensus       796 ~dg~~l~~~s-d------g~i~iwd~~~~~~~~~~~~-~~~~v~~l~~sp~~~~~lasg~~d-g-----~v~iwd~~~~~  861 (1082)
                      ..+.+++.|+ .      ..+..+|..++.-.....- ......++++.  ++.+.++|+.| |     .+..||..+++
T Consensus       283 ~~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~--~~~lYv~GG~~~~~~~l~~ve~YD~~~~~  360 (571)
T KOG4441|consen  283 VSGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVL--NGKLYVVGGYDSGSDRLSSVERYDPRTNQ  360 (571)
T ss_pred             CCCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEE--CCEEEEEccccCCCcccceEEEecCCCCc
Confidence            3455666665 2      3488899887644332221 22224445555  56888999998 3     67788877654


Q ss_pred             e--eeeecccccCEEEEEEeCCCCEEEEEeCCCc-----EEEEEcCCcccccceeeeccCCCCCCCCCCcEEEEcCCCcE
Q 001415          862 V--KSKLKGHSKRITGLAFSHALNVLVSSGADSQ-----LCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIH  934 (1082)
Q Consensus       862 ~--~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~-----i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~  934 (1082)
                      -  +..+..........  .-+|.+.|+||.||.     |..||..+.+..........        .-..-...-+|+.
T Consensus       361 W~~~a~M~~~R~~~~v~--~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~--------r~~~gv~~~~g~i  430 (571)
T KOG4441|consen  361 WTPVAPMNTKRSDFGVA--VLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTR--------RSGHGVAVLGGKL  430 (571)
T ss_pred             eeccCCccCccccceeE--EECCEEEEEeccccccccccEEEecCCCCcccccCCCCcc--------eeeeEEEEECCEE
Confidence            2  22232222222212  236888999999964     77788877543222111111        0112222346666


Q ss_pred             EEE-Eec------CeEEEEEccCcceeeeeccCCCCcceeEEEEcCCCceEEEeecCCc-----EEEEecCCceeeeeeC
Q 001415          935 FLV-VHE------TQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDAT-----VCVFSAANLKLRCRIN 1002 (1082)
Q Consensus       935 l~~-~~d------~~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~dg~~l~t~s~dg~-----v~vwd~~~~~~~~~~~ 1002 (1082)
                      .++ +.+      ..+..||..+.+....-....-.....  .-.-++...+.|+.|+.     |..||..+.+-...-.
T Consensus       431 Yi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g--~a~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~  508 (571)
T KOG4441|consen  431 YIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFG--VAVLNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAP  508 (571)
T ss_pred             EEEcCcCCCccccceEEEEcCCCCceeecCCcccccccce--EEEECCEEEEECCccCCCccceEEEEcCCCCceeEccc
Confidence            666 323      357889988776654333211111111  22336788888887763     7778888776553311


Q ss_pred             CCeecCCCCCCCCceeeEEEEeCCCCCeEEEEecCC-----cEEEEccCCCCCccccCCC
Q 001415         1003 PSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDG-----GVHVFEPLESEGKWGVPPP 1057 (1082)
Q Consensus      1003 ~~~~~~~gh~~~~v~~~~~~~~~~d~~~l~s~~~dg-----~v~vW~~~~~~~~~~~~~~ 1057 (1082)
                          .+..     .....++-.  ++.+.++|+.||     +|..||..+.+  |....+
T Consensus       509 ----m~~~-----rs~~g~~~~--~~~ly~vGG~~~~~~l~~ve~ydp~~d~--W~~~~~  555 (571)
T KOG4441|consen  509 ----MTSP-----RSAVGVVVL--GGKLYAVGGFDGNNNLNTVECYDPETDT--WTEVTE  555 (571)
T ss_pred             ----Cccc-----cccccEEEE--CCEEEEEecccCccccceeEEcCCCCCc--eeeCCC
Confidence                1111     111122222  478899999887     68889888866  665444

>PRK10115 protease 2; Provisional

Probab=96.20  E-value=4.5  Score=49.02  Aligned_cols=115  Identities=10%  Similarity=0.071  Sum_probs=67.2

Q ss_pred             CCceEEEEecCCCeEEEEEcCCC----cEEEEEccccceeeeeceeeeccCCCCcccccccccCCCCceeEEEEecCCCe
Q 001415          359 SSPMSMDFHPVQQTLLLVGTNVG----DIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSL  434 (1082)
Q Consensus       359 ~~v~~~~~spdg~~llasgs~dg----~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~  434 (1082)
                      -.+..+.+||||++|+.+.+.+|    .|++-|+.+|+.+..                  .+.+   .-..++|++|++.
T Consensus       127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~------------------~i~~---~~~~~~w~~D~~~  185 (686)
T PRK10115        127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPE------------------LLDN---VEPSFVWANDSWT  185 (686)
T ss_pred             EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCc------------------cccC---cceEEEEeeCCCE
Confidence            34667889999997655544444    388889888764321                  0111   1145999999998


Q ss_pred             EEEEeCC------CeEEEEEccCCce-eeEEEEeeccccCee-EEEecCCCCceEEEEEe-CCCcEEEEEc
Q 001415          435 FGVAYSR------HIVQIYSYHGGDE-VRQHLEIDAHVGGVN-DIAFSHPNKQLCVITCG-DDKTIKVWDA  496 (1082)
Q Consensus       435 las~~~d------~~v~iwd~~~~~~-~~~~~~~~~h~~~V~-~l~fs~dg~~~~l~s~s-~d~~i~vwd~  496 (1082)
                      |+....+      ..|..+++.++.. -..  .+........ .+..+.|++.+++.+.+ .++.+.+++.
T Consensus       186 ~~y~~~~~~~~~~~~v~~h~lgt~~~~d~l--v~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~  254 (686)
T PRK10115        186 FYYVRKHPVTLLPYQVWRHTIGTPASQDEL--VYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDA  254 (686)
T ss_pred             EEEEEecCCCCCCCEEEEEECCCChhHCeE--EEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEEC
Confidence            8776542      3677888887721 111  2333233333 33345578753322222 3456888885

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=96.18  E-value=0.82  Score=49.61  Aligned_cols=191  Identities=15%  Similarity=0.171  Sum_probs=96.2

Q ss_pred             EEEeecCCCeEEEee-----C--CeEEEEecCCCeeEEEECCCCC---CeeEEEEecCCCcEEEEEe-------------
Q 001415          791 CFALSKNDSYVMSAS-----G--GKISLFNMMTFKTMATFMPPPP---AATFLAFHPQDNNIIAIGM-------------  847 (1082)
Q Consensus       791 ~l~~s~dg~~l~~~s-----d--g~i~iwd~~~~~~~~~~~~~~~---~v~~l~~sp~~~~~lasg~-------------  847 (1082)
                      .+..-|+|.+++++-     +  |.+.+.|-++.+..........   .-..+-|.| ..+.+++..             
T Consensus       134 T~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~tf~v~g~We~~~~~~~~gYDfw~qp-r~nvMiSSeWg~P~~~~~Gf~~  212 (461)
T PF05694_consen  134 TVHCLPDGRIMISALGDADGNGPGGFVLLDGETFEVKGRWEKDRGPQPFGYDFWYQP-RHNVMISSEWGAPSMFEKGFNP  212 (461)
T ss_dssp             EEEE-SS--EEEEEEEETTS-S--EEEEE-TTT--EEEE--SB-TT------EEEET-TTTEEEE-B---HHHHTT---T
T ss_pred             eeeecCCccEEEEeccCCCCCCCCcEEEEcCccccccceeccCCCCCCCCCCeEEcC-CCCEEEEeccCChhhcccCCCh
Confidence            345558998888762     1  4599999998888777654322   345677888 666776654             


Q ss_pred             -------CCCcEEEEecccceeeeeecccc--cCEEEEEEeCC--CCE-EEEEeCCCcEEEEEc-CCcccccceeeeccC
Q 001415          848 -------DDSSIQIYNVRVDEVKSKLKGHS--KRITGLAFSHA--LNV-LVSSGADSQLCVWSS-DGWEKQKNRFLQIPT  914 (1082)
Q Consensus       848 -------~dg~v~iwd~~~~~~~~~l~~h~--~~V~~l~~s~d--~~~-l~s~s~Dg~i~vwd~-~~~~~~~~~~~~~~~  914 (1082)
                             ...++.+||+.+.+.++++.--.  .....|.|..+  ..+ ++.+.-.++|..|-- +.++-...+++.++.
T Consensus       213 ~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~  292 (461)
T PF05694_consen  213 EDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPA  292 (461)
T ss_dssp             TTHHHH-S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--
T ss_pred             hHhhcccccCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCC
Confidence                   24589999999999998886332  34566777654  333 333334444544433 444444444444433


Q ss_pred             CCC-----CC--------CCCCcEEEEcCCCcEEEEE--ecCeEEEEEccCcc---eeeeeccCCC--------------
Q 001415          915 GRT-----PT--------AQSDTRVQFHQDQIHFLVV--HETQLAIFETTKLE---CVKQWVPRES--------------  962 (1082)
Q Consensus       915 ~~~-----~~--------~~~v~~~~fspdg~~l~~~--~d~~i~iwd~~~~~---~~~~~~~~~h--------------  962 (1082)
                      ...     +.        ..-++.|..|.|.++|.++  ..|.++-||+..-.   .+.+....+-              
T Consensus       293 ~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l  372 (461)
T PF05694_consen  293 KKVEGWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRL  372 (461)
T ss_dssp             EE--SS---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS-----
T ss_pred             cccCcccccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCcccccccc
Confidence            210     00        1457999999999999995  68999999987532   3332222211              


Q ss_pred             CcceeEEEEcCCCceEEEee
Q 001415          963 SAPITHATFSCDSQLVYACF  982 (1082)
Q Consensus       963 ~~~i~~l~~s~dg~~l~t~s  982 (1082)
                      .+....+..|-||+.|+..+
T Consensus       373 ~GgPqMvqlS~DGkRlYvTn  392 (461)
T PF05694_consen  373 RGGPQMVQLSLDGKRLYVTN  392 (461)
T ss_dssp             -S----EEE-TTSSEEEEE-
T ss_pred             CCCCCeEEEccCCeEEEEEe
Confidence            22347788999999988765

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=96.06  E-value=1.1  Score=43.78  Aligned_cols=219  Identities=14%  Similarity=0.158  Sum_probs=110.4

Q ss_pred             CeEEEEEcCCCcEEEEEccccceeeeeceeeeccCCCCcccccccccCCCCceeEEEEecCC---CeEEEEeCCCeEEEE
Q 001415          371 QTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDG---SLFGVAYSRHIVQIY  447 (1082)
Q Consensus       371 ~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg---~~las~~~d~~v~iw  447 (1082)
                      +.|+.+-=..|.|.-||..+.+..+. .                 +.+.  ++..+.+--.|   .+.+.++..-.|.=|
T Consensus        27 ~sLl~VDi~ag~v~r~D~~qn~v~ra-~-----------------ie~p--~~ag~ilpv~~~~q~~~v~~G~kf~i~nw   86 (310)
T KOG4499|consen   27 QSLLYVDIEAGEVHRYDIEQNKVYRA-K-----------------IEGP--PSAGFILPVEGGPQEFAVGCGSKFVIVNW   86 (310)
T ss_pred             ceEEEEEeccCceehhhhhhhheEEE-E-----------------EecC--cceeEEEEecCCCceEEEeecceEEEEEc
Confidence            33566655667777788876544331 0                 1111  13333332222   233444444445557


Q ss_pred             Ecc--CCceeeEEEEeec--cccCeeEEEecCCCCceEEEEEeC-C---------CcEEEEEccCCceeEEeecCCcCeE
Q 001415          448 SYH--GGDEVRQHLEIDA--HVGGVNDIAFSHPNKQLCVITCGD-D---------KTIKVWDATNGAKQYIFEGHEAPVY  513 (1082)
Q Consensus       448 d~~--~~~~~~~~~~~~~--h~~~V~~l~fs~dg~~~~l~s~s~-d---------~~i~vwd~~~~~~~~~~~~h~~~v~  513 (1082)
                      |..  .-...+...++..  .....+.-..+|+|+  + ..|.. |         |.++.|-.  +..+..+...-+--+
T Consensus        87 d~~~~~a~v~~t~~ev~~d~kknR~NDgkvdP~Gr--y-y~GtMad~~~~le~~~g~Ly~~~~--~h~v~~i~~~v~IsN  161 (310)
T KOG4499|consen   87 DGVSESAKVYRTLFEVQPDRKKNRLNDGKVDPDGR--Y-YGGTMADFGDDLEPIGGELYSWLA--GHQVELIWNCVGISN  161 (310)
T ss_pred             ccccceeeeeeeccccCchHHhcccccCccCCCCc--e-eeeeeccccccccccccEEEEecc--CCCceeeehhccCCc
Confidence            733  2222221111211  133556667789999  4 33321 1         23333321  222222222223334


Q ss_pred             EEeeeecCCceEEEEecCCCcEEEEecCCCCceeeecCCCCceEEEEE-ccCCCeeeecccccceeEEEecCCCCEEEEE
Q 001415          514 SVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAY-SADGTRTYQGFRKRSLGVVQFDTTKNRFLAA  592 (1082)
Q Consensus       514 ~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~-s~d~~~~~~~~~~~~i~~~~~~~~~~~l~~~  592 (1082)
                      .++|..+.. .+.++-+.+-.|.-||.+.......   ....+..+.- .|.+.        ..-..++++.+|+.+++.
T Consensus       162 gl~Wd~d~K-~fY~iDsln~~V~a~dyd~~tG~~s---nr~~i~dlrk~~~~e~--------~~PDGm~ID~eG~L~Va~  229 (310)
T KOG4499|consen  162 GLAWDSDAK-KFYYIDSLNYEVDAYDYDCPTGDLS---NRKVIFDLRKSQPFES--------LEPDGMTIDTEGNLYVAT  229 (310)
T ss_pred             cccccccCc-EEEEEccCceEEeeeecCCCccccc---CcceeEEeccCCCcCC--------CCCCcceEccCCcEEEEE
Confidence            566763332 4555666777888888543222110   0011111111 00000        011124556678888888


Q ss_pred             eCCCeEEEEECCCcceEEEEecCCCCCCcCeEEEcC
Q 001415          593 GDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNK  628 (1082)
Q Consensus       593 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~  628 (1082)
                      -..++|...|..+|+.+..+.....  .+++++|--
T Consensus       230 ~ng~~V~~~dp~tGK~L~eiklPt~--qitsccFgG  263 (310)
T KOG4499|consen  230 FNGGTVQKVDPTTGKILLEIKLPTP--QITSCCFGG  263 (310)
T ss_pred             ecCcEEEEECCCCCcEEEEEEcCCC--ceEEEEecC
Confidence            8999999999999999999987754  789999964

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.02  E-value=1.8  Score=44.23  Aligned_cols=181  Identities=11%  Similarity=0.137  Sum_probs=106.4

Q ss_pred             ccCCCCceeEEEEecCCCeEEEEeCCCeEEEEEccCCceeeEEEEeeccccCeeEEEecCCCCceEEEEEeCCCcEEEEE
Q 001415          416 VKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWD  495 (1082)
Q Consensus       416 ~~~h~~~V~~l~~spdg~~las~~~d~~v~iwd~~~~~~~~~~~~~~~h~~~V~~l~fs~dg~~~~l~s~s~d~~i~vwd  495 (1082)
                      ..+-...|+++.|+|+.+.|.+......-.||=...|+.++.. .+.+- .....+.+..+|+  ++++--.++.+.++.
T Consensus        81 i~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~Gdlirti-PL~g~-~DpE~Ieyig~n~--fvi~dER~~~l~~~~  156 (316)
T COG3204          81 ILGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTI-PLTGF-SDPETIEYIGGNQ--FVIVDERDRALYLFT  156 (316)
T ss_pred             cccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEe-ccccc-CChhHeEEecCCE--EEEEehhcceEEEEE
Confidence            3445556999999999999999888888888888888877643 44442 3345678888888  788888889999988


Q ss_pred             ccCCceeEEee---------cC-CcCeEEEeeeecCCceEEEEecCCCcEEEEecCCCCceeeecCCCCceEEEEEccCC
Q 001415          496 ATNGAKQYIFE---------GH-EAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADG  565 (1082)
Q Consensus       496 ~~~~~~~~~~~---------~h-~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~  565 (1082)
                      +..+..+..+.         .+ ....-.++|.+..  +.|+.+-+-.-+.++.+.........          ..+.+-
T Consensus       157 vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~--~~l~~aKEr~P~~I~~~~~~~~~l~~----------~~~~~~  224 (316)
T COG3204         157 VDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVD--HRLFVAKERNPIGIFEVTQSPSSLSV----------HASLDP  224 (316)
T ss_pred             EcCCccEEeccceEEeccccCCCCcCceeeecCCCC--ceEEEEEccCCcEEEEEecCCccccc----------ccccCc
Confidence            87653332211         12 3445667776544  56666666666666655422111110          000000


Q ss_pred             CeeeecccccceeEEEecCCCCEE-EEEeCCCeEEEEECCCcceEEEEec
Q 001415          566 TRTYQGFRKRSLGVVQFDTTKNRF-LAAGDDFSIKFWDMDSVQLLTSIDA  614 (1082)
Q Consensus       566 ~~~~~~~~~~~i~~~~~~~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~  614 (1082)
                      . ......-..+..+.|++..+.+ +-+.+++.+.-.|.. |..+..+..
T Consensus       225 ~-~~~~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~-G~~~~~lsL  272 (316)
T COG3204         225 T-ADRDLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDLS-GEVIELLSL  272 (316)
T ss_pred             c-cccceEeeccccceecCCCCcEEEEecCCceEEEEecC-CCeeeeEEe
Confidence            0 0000011245556677655544 445577777777754 444544443

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=96.02  E-value=0.36  Score=50.21  Aligned_cols=150  Identities=16%  Similarity=0.059  Sum_probs=88.3

Q ss_pred             CeeEEEEecCCCcEEEEEe-CCCcEEEEecccceeeeee-cccccCEEEEEEeCCCCEEEEEeCCCcEEEEE-cCCcccc
Q 001415          829 AATFLAFHPQDNNIIAIGM-DDSSIQIYNVRVDEVKSKL-KGHSKRITGLAFSHALNVLVSSGADSQLCVWS-SDGWEKQ  905 (1082)
Q Consensus       829 ~v~~l~~sp~~~~~lasg~-~dg~v~iwd~~~~~~~~~l-~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd-~~~~~~~  905 (1082)
                      .+.+.++++ ++..+|... .++.-.+|-...+.....+ .+  ..++...|++++...+....+...+++. ...+...
T Consensus        25 ~~~s~AvS~-dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~~g--~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~  101 (253)
T PF10647_consen   25 DVTSPAVSP-DGSRVAAVSEGDGGRSLYVGPAGGPVRPVLTG--GSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGE  101 (253)
T ss_pred             cccceEECC-CCCeEEEEEEcCCCCEEEEEcCCCcceeeccC--CccccccccCCCCEEEEEcCCCceEEEEecCCCcce
Confidence            688999999 666555444 3333344433333333332 33  3788889999988877777677677774 2332221


Q ss_pred             cceeeeccCCCCCCCCCCcEEEEcCCCcEEEEEe----cCeEEEEEcc---Cc--cee-eeeccC-CCCcceeEEEEcCC
Q 001415          906 KNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVH----ETQLAIFETT---KL--ECV-KQWVPR-ESSAPITHATFSCD  974 (1082)
Q Consensus       906 ~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~~----d~~i~iwd~~---~~--~~~-~~~~~~-~h~~~i~~l~~s~d  974 (1082)
                      . ..+......    ..|..+++||||..++...    ++.|.+--+.   .+  ..+ ...... .....++++.|.++
T Consensus       102 ~-~~v~~~~~~----~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~  176 (253)
T PF10647_consen  102 P-VEVDWPGLR----GRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDD  176 (253)
T ss_pred             e-EEecccccC----CceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCC
Confidence            1 111111110    1689999999999999843    5677766543   22  011 111110 22468899999999


Q ss_pred             CceEEEeecCCc
Q 001415          975 SQLVYACFLDAT  986 (1082)
Q Consensus       975 g~~l~t~s~dg~  986 (1082)
                      +.+++.+...+.
T Consensus       177 ~~L~V~~~~~~~  188 (253)
T PF10647_consen  177 STLVVLGRSAGG  188 (253)
T ss_pred             CEEEEEeCCCCC
Confidence            998877765443

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=95.93  E-value=0.43  Score=41.12  Aligned_cols=66  Identities=14%  Similarity=0.180  Sum_probs=47.5

Q ss_pred             eeEEEe---cCCCCceEEEEEeCCCcEEEEEccCCceeEEeecCCcCeEEEeeeecCCceEEEEecCCCcEEEEec
Q 001415          468 VNDIAF---SHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLY  540 (1082)
Q Consensus       468 V~~l~f---s~dg~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~  540 (1082)
                      |+++++   ..||.. -|+.|+.|..||+|+  ....+..+. ..+.|++++-...   ..++.+..+|+|-+|+-
T Consensus         2 V~al~~~d~d~dg~~-eLlvGs~D~~IRvf~--~~e~~~Ei~-e~~~v~~L~~~~~---~~F~Y~l~NGTVGvY~~   70 (111)
T PF14783_consen    2 VTALCLFDFDGDGEN-ELLVGSDDFEIRVFK--GDEIVAEIT-ETDKVTSLCSLGG---GRFAYALANGTVGVYDR   70 (111)
T ss_pred             eeEEEEEecCCCCcc-eEEEecCCcEEEEEe--CCcEEEEEe-cccceEEEEEcCC---CEEEEEecCCEEEEEeC
Confidence            455554   445555 799999999999996  446677776 4566777764332   47999999999988854

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=95.90  E-value=2.9  Score=44.24  Aligned_cols=232  Identities=11%  Similarity=0.025  Sum_probs=109.2

Q ss_pred             CccEEEeecCCCeEEEeeCCeEEEEecCCCeeEEEEC---CCCCCeeEEEEecCCCcEEEEEeCCCcEEEEeccccee-e
Q 001415          788 AVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFM---PPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEV-K  863 (1082)
Q Consensus       788 ~i~~l~~s~dg~~l~~~sdg~i~iwd~~~~~~~~~~~---~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~-~  863 (1082)
                      ...++.|..+ ..+++|..+. .+-..+.++.-..+.   .-++....+.... ++..++ ++..|.|+.=. ..|+. .
T Consensus        63 ~l~~I~f~~~-~g~ivG~~g~-ll~T~DgG~tW~~v~l~~~lpgs~~~i~~l~-~~~~~l-~~~~G~iy~T~-DgG~tW~  137 (302)
T PF14870_consen   63 HLNSISFDGN-EGWIVGEPGL-LLHTTDGGKTWERVPLSSKLPGSPFGITALG-DGSAEL-AGDRGAIYRTT-DGGKTWQ  137 (302)
T ss_dssp             EEEEEEEETT-EEEEEEETTE-EEEESSTTSS-EE----TT-SS-EEEEEEEE-TTEEEE-EETT--EEEES-STTSSEE
T ss_pred             eEEEEEecCC-ceEEEcCCce-EEEecCCCCCcEEeecCCCCCCCeeEEEEcC-CCcEEE-EcCCCcEEEeC-CCCCCee
Confidence            3556777543 4455555443 333333333333322   1223334444444 333333 34455544321 22221 1


Q ss_pred             eeecccccCEEEEEEeCCCCEEEEEeCCCcEEEEEcCCcccccceeeeccCCCCCCCCCCcEEEEcCCCcEEEEEecCeE
Q 001415          864 SKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQL  943 (1082)
Q Consensus       864 ~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~~d~~i  943 (1082)
                      .....-.+.+..+..++||++++++..-....-|+--...   ........     ...|..+.|+||+.+.+++..+.|
T Consensus       138 ~~~~~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~---w~~~~r~~-----~~riq~~gf~~~~~lw~~~~Gg~~  209 (302)
T PF14870_consen  138 AVVSETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTT---WQPHNRNS-----SRRIQSMGFSPDGNLWMLARGGQI  209 (302)
T ss_dssp             EEE-S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS----EEEE--S-----SS-EEEEEE-TTS-EEEEETTTEE
T ss_pred             EcccCCcceeEeEEECCCCcEEEEECcccEEEEecCCCcc---ceEEccCc-----cceehhceecCCCCEEEEeCCcEE
Confidence            2233445778899999999998888766656677654311   11112111     156899999999998888888888


Q ss_pred             EEEE-ccCcceeee--eccCCCCcceeEEEEcCCCceEEEeecCCcEEEEecCCceeeeeeCCCeecCCCCCCCCceeeE
Q 001415          944 AIFE-TTKLECVKQ--WVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLV 1020 (1082)
Q Consensus       944 ~iwd-~~~~~~~~~--~~~~~h~~~i~~l~~s~dg~~l~t~s~dg~v~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~ 1020 (1082)
                      +.=+ ....+....  .........+..++|.++++..|+|+ .|.+ +...+.|+.-.+-......|.       ....
T Consensus       210 ~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg-~G~l-~~S~DgGktW~~~~~~~~~~~-------n~~~  280 (302)
T PF14870_consen  210 QFSDDPDDGETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGG-SGTL-LVSTDGGKTWQKDRVGENVPS-------NLYR  280 (302)
T ss_dssp             EEEE-TTEEEEE---B-TTSS--S-EEEEEESSSS-EEEEES-TT-E-EEESSTTSS-EE-GGGTTSSS----------E
T ss_pred             EEccCCCCccccccccCCcccCceeeEEEEecCCCCEEEEeC-CccE-EEeCCCCccceECccccCCCC-------ceEE
Confidence            8766 222222211  11111234589999999988888765 4543 456677776655442111221       2347


Q ss_pred             EEEeCCCCCeEEEEecCCcEEEE
Q 001415         1021 IAAHPQEPNEFALGLSDGGVHVF 1043 (1082)
Q Consensus      1021 ~~~~~~d~~~l~s~~~dg~v~vW 1043 (1082)
                      +.|.++  +.-.+.+.+|.|.-|
T Consensus       281 i~f~~~--~~gf~lG~~G~ll~~  301 (302)
T PF14870_consen  281 IVFVNP--DKGFVLGQDGVLLRY  301 (302)
T ss_dssp             EEEEET--TEEEEE-STTEEEEE
T ss_pred             EEEcCC--CceEEECCCcEEEEe
Confidence            888763  455555678877654

>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]

Probab=95.88  E-value=5.9  Score=47.63  Aligned_cols=105  Identities=11%  Similarity=0.119  Sum_probs=65.8

Q ss_pred             EEeecCCCeEEEeeCCeEEEEecCCCeeEEEEC--CCCCCeeEEEEecCCCcEEEEEeCCCcEEEE--ecccceeeeeec
Q 001415          792 FALSKNDSYVMSASGGKISLFNMMTFKTMATFM--PPPPAATFLAFHPQDNNIIAIGMDDSSIQIY--NVRVDEVKSKLK  867 (1082)
Q Consensus       792 l~~s~dg~~l~~~sdg~i~iwd~~~~~~~~~~~--~~~~~v~~l~~sp~~~~~lasg~~dg~v~iw--d~~~~~~~~~l~  867 (1082)
                      .++.|-..++.+|-+..+++||+...+.++...  .....|+.+.+.   +..+++|...-.|..+  +-...+++ .+.
T Consensus       939 ~Ai~~f~~~~LagvG~~l~~YdlG~K~lLRk~e~k~~p~~Is~iqt~---~~RI~VgD~qeSV~~~~y~~~~n~l~-~fa 1014 (1205)
T KOG1898|consen  939 GAICPFQGRVLAGVGRFLRLYDLGKKKLLRKCELKFIPNRISSIQTY---GARIVVGDIQESVHFVRYRREDNQLI-VFA 1014 (1205)
T ss_pred             eEEeccCCEEEEecccEEEEeeCChHHHHhhhhhccCceEEEEEeec---ceEEEEeeccceEEEEEEecCCCeEE-EEe
Confidence            456677778888888999999998877665533  234567777774   4567777766566554  43334433 332


Q ss_pred             c--cccCEEEEEEeCCCCEEEEEeCCCcEEEEEcCC
Q 001415          868 G--HSKRITGLAFSHALNVLVSSGADSQLCVWSSDG  901 (1082)
Q Consensus       868 ~--h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~  901 (1082)
                      .  -..-|+++.+- |...+|.++.=|.+.+-.+..
T Consensus      1015 dD~~pR~Vt~~~~l-D~~tvagaDrfGNi~~vR~P~ 1049 (1205)
T KOG1898|consen 1015 DDPVPRHVTALELL-DYDTVAGADRFGNIAVVRIPP 1049 (1205)
T ss_pred             CCCccceeeEEEEe-cCCceeeccccCcEEEEECCC
Confidence            2  22346666654 555677777767666665544

>PHA02713 hypothetical protein; Provisional

Probab=95.84  E-value=0.48  Score=55.80  Aligned_cols=190  Identities=10%  Similarity=0.056  Sum_probs=97.5

Q ss_pred             cCCCeEEEee-C------CeEEEEecCCCeeEEEECCCCCCeeEEEEecCCCcEEEEEeCCC-----cEEEEecccce--
Q 001415          796 KNDSYVMSAS-G------GKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDS-----SIQIYNVRVDE--  861 (1082)
Q Consensus       796 ~dg~~l~~~s-d------g~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasg~~dg-----~v~iwd~~~~~--  861 (1082)
                      -++.+.+.|+ +      ..+..||..+..-...-.-........+..- ++++.+.|+.++     .+..||..+.+  
T Consensus       302 l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~~-~g~IYviGG~~~~~~~~sve~Ydp~~~~W~  380 (557)
T PHA02713        302 VDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAVI-DDTIYAIGGQNGTNVERTIECYTMGDDKWK  380 (557)
T ss_pred             ECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEEE-CCEEEEECCcCCCCCCceEEEEECCCCeEE
Confidence            4667766665 2      2377888876543211111111111112222 678888888764     48889987643  


Q ss_pred             eeeeecccccCEEEEEEeCCCCEEEEEeCCC-----------------------cEEEEEcCCcccccceeeeccCCCCC
Q 001415          862 VKSKLKGHSKRITGLAFSHALNVLVSSGADS-----------------------QLCVWSSDGWEKQKNRFLQIPTGRTP  918 (1082)
Q Consensus       862 ~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg-----------------------~i~vwd~~~~~~~~~~~~~~~~~~~~  918 (1082)
                      .+..+.........+  .-+|+..+.||.++                       .+..||..+.+-.....+....  . 
T Consensus       381 ~~~~mp~~r~~~~~~--~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~r--~-  455 (557)
T PHA02713        381 MLPDMPIALSSYGMC--VLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWTGT--I-  455 (557)
T ss_pred             ECCCCCcccccccEE--EECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCCCCccc--c-
Confidence            333332221212222  23688888887653                       4677887775432211111111  1 


Q ss_pred             CCCCCcEEEEcCCCcEEEEE-ec------CeEEEEEccC-cceeeeeccCCCCcceeEEEEcCCCceEEEeecCC--cEE
Q 001415          919 TAQSDTRVQFHQDQIHFLVV-HE------TQLAIFETTK-LECVKQWVPRESSAPITHATFSCDSQLVYACFLDA--TVC  988 (1082)
Q Consensus       919 ~~~~v~~~~fspdg~~l~~~-~d------~~i~iwd~~~-~~~~~~~~~~~h~~~i~~l~~s~dg~~l~t~s~dg--~v~  988 (1082)
                         . .+++ .-+|+..+++ .+      ..+..||..+ .+....-...........+.+  +|+..++|+.||  ++.
T Consensus       456 ---~-~~~~-~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~~--~~~iyv~Gg~~~~~~~e  528 (557)
T PHA02713        456 ---R-PGVV-SHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTILH--DNTIMMLHCYESYMLQD  528 (557)
T ss_pred             ---c-CcEE-EECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeEEE--CCEEEEEeeecceeehh
Confidence               1 1222 3345555553 22      2467899887 444322222222222333333  788899999888  677


Q ss_pred             EEecCCceee
Q 001415          989 VFSAANLKLR  998 (1082)
Q Consensus       989 vwd~~~~~~~  998 (1082)
                      .||..+.+-.
T Consensus       529 ~yd~~~~~W~  538 (557)
T PHA02713        529 TFNVYTYEWN  538 (557)
T ss_pred             hcCccccccc
Confidence            7777766544

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.81  E-value=0.026  Score=66.37  Aligned_cols=104  Identities=17%  Similarity=0.226  Sum_probs=77.2

Q ss_pred             CCCeEEEEeCCCeEEEEEccCCceeeEEEEeeccccCeeEEEecCCCCceEEEEEeCCCcEEEEEccCCceeEEeecCCc
Q 001415          431 DGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEA  510 (1082)
Q Consensus       431 dg~~las~~~d~~v~iwd~~~~~~~~~~~~~~~h~~~V~~l~fs~dg~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~  510 (1082)
                      -+..+|.|+..|.|-..|+.+.  +++...-..-.++|++++|+.+|.  +++.|-.+|.|.+||+..++.++.+..|..
T Consensus        98 ~~~~ivi~Ts~ghvl~~d~~~n--L~~~~~ne~v~~~Vtsvafn~dg~--~l~~G~~~G~V~v~D~~~~k~l~~i~e~~a  173 (1206)
T KOG2079|consen   98 VVVPIVIGTSHGHVLLSDMTGN--LGPLHQNERVQGPVTSVAFNQDGS--LLLAGLGDGHVTVWDMHRAKILKVITEHGA  173 (1206)
T ss_pred             eeeeEEEEcCchhhhhhhhhcc--cchhhcCCccCCcceeeEecCCCc--eeccccCCCcEEEEEccCCcceeeeeecCC
Confidence            4667899999999998888764  221111222357999999999999  788899999999999999999999998888


Q ss_pred             CeEEEeeee-cCCceEEEEecCCCcEEEEec
Q 001415          511 PVYSVCPHH-KENIQFIFSTALDGKIKAWLY  540 (1082)
Q Consensus       511 ~v~~~~~~~-~~~~~~l~s~~~dg~i~iwd~  540 (1082)
                      +++++-++. ..++..++++...|.  +|.+
T Consensus       174 p~t~vi~v~~t~~nS~llt~D~~Gs--f~~l  202 (1206)
T KOG2079|consen  174 PVTGVIFVGRTSQNSKLLTSDTGGS--FWKL  202 (1206)
T ss_pred             ccceEEEEEEeCCCcEEEEccCCCc--eEEE
Confidence            877775443 233345777666665  5644

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=95.78  E-value=0.76  Score=46.77  Aligned_cols=172  Identities=6%  Similarity=0.040  Sum_probs=111.9

Q ss_pred             ecccccCEEEEEEeCCCCEEEEEeCCCcEEEEEcCCcccccceeeeccCCCCCCCCCCcEEEEcCCCcEEEEE-ecCeEE
Q 001415          866 LKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQLA  944 (1082)
Q Consensus       866 l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~-~d~~i~  944 (1082)
                      +.|-...|.++.|+|+.+.|++......-.||=-..|+..+...+...       .....+.+..+|++.++. .++.+.
T Consensus        81 i~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~-------~DpE~Ieyig~n~fvi~dER~~~l~  153 (316)
T COG3204          81 ILGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGF-------SDPETIEYIGGNQFVIVDERDRALY  153 (316)
T ss_pred             cccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEeccccc-------CChhHeEEecCCEEEEEehhcceEE
Confidence            445556699999999999999988888777776666666554444433       234678888899988884 677888


Q ss_pred             EEEccCcceeeeec-----c--CCC-CcceeEEEEcCCCceEEEeecCCcEEEEecCCceeeeeeCCCeecCCCCCCC-C
Q 001415          945 IFETTKLECVKQWV-----P--RES-SAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSS-N 1015 (1082)
Q Consensus       945 iwd~~~~~~~~~~~-----~--~~h-~~~i~~l~~s~dg~~l~t~s~dg~v~vwd~~~~~~~~~~~~~~~~~~gh~~~-~ 1015 (1082)
                      ++.++....+....     .  ..+ +...-.++|+|..+.|..+-+-.-+.||.+..+.---...    ....+... .
T Consensus       154 ~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~----~~~~~~~~~~  229 (316)
T COG3204         154 LFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVH----ASLDPTADRD  229 (316)
T ss_pred             EEEEcCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccc----cccCcccccc
Confidence            88776553322211     1  122 5567889999999999999888888888776433111100    00011011 0


Q ss_pred             c---eeeEEEEeCCCCCeEEEEecCCcEEEEccCCC
Q 001415         1016 V---HPLVIAAHPQEPNEFALGLSDGGVHVFEPLES 1048 (1082)
Q Consensus      1016 v---~~~~~~~~~~d~~~l~s~~~dg~v~vW~~~~~ 1048 (1082)
                      +   -.-++.|.+..+.+|+-+.+++.|.-.|....
T Consensus       230 ~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~G~  265 (316)
T COG3204         230 LFVLDVSGLEFNAITNSLLVLSDESRRLLEVDLSGE  265 (316)
T ss_pred             eEeeccccceecCCCCcEEEEecCCceEEEEecCCC
Confidence            1   12256778766788888888888877765544

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=95.74  E-value=0.033  Score=39.67  Aligned_cols=33  Identities=18%  Similarity=0.299  Sum_probs=29.5

Q ss_pred             CCceeEEEEecCCCeEEEEeCCCeEEEEEccCCc
Q 001415          420 GVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGD  453 (1082)
Q Consensus       420 ~~~V~~l~~spdg~~las~~~d~~v~iwd~~~~~  453 (1082)
                      ...|.+++|||...+||.++.+|.|.++.+ +++
T Consensus        11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~q   43 (47)
T PF12894_consen   11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQ   43 (47)
T ss_pred             CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCc
Confidence            457999999999999999999999999998 443

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=95.69  E-value=7.4  Score=47.29  Aligned_cols=62  Identities=13%  Similarity=0.089  Sum_probs=41.2

Q ss_pred             CeEEEEEccCcceeeeeccCCCC----------------cceeEEEEcCCCceEEE-eecCCcEEEEecCCceeeeeeC
Q 001415          941 TQLAIFETTKLECVKQWVPRESS----------------APITHATFSCDSQLVYA-CFLDATVCVFSAANLKLRCRIN 1002 (1082)
Q Consensus       941 ~~i~iwd~~~~~~~~~~~~~~h~----------------~~i~~l~~s~dg~~l~t-~s~dg~v~vwd~~~~~~~~~~~ 1002 (1082)
                      |.|.-+|+.+|+.+-......+.                .+...-...-.|.+++. |+.|+.++-+|.++|+++-+..
T Consensus       641 G~l~AiDl~tGk~~W~~~~g~~~~~~p~~~~~~~~~~~g~p~~gG~l~TagglvF~~gt~d~~l~A~D~~tGk~lW~~~  719 (764)
T TIGR03074       641 GYMAAIDLKTGKVVWQHPNGTVRDTGPMGIRMPLPIPIGVPTLGGPLATAGGLVFIGATQDNYLRAYDLSTGKELWKAR  719 (764)
T ss_pred             EEEEEEECCCCcEeeeeECCccccccccccccccccccCCcccCCcEEEcCCEEEEEeCCCCEEEEEECCCCceeeEee
Confidence            67888888888876554432110                11111122335666666 6799999999999999998877

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=95.64  E-value=0.033  Score=39.69  Aligned_cols=33  Identities=21%  Similarity=0.440  Sum_probs=29.2

Q ss_pred             CCCceEEEEecCCCeEEEEEcCCCcEEEEEccccc
Q 001415          358 GSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRE  392 (1082)
Q Consensus       358 ~~~v~~~~~spdg~~llasgs~dg~i~iwd~~~~~  392 (1082)
                      ...|.+++|+|... |+|.|+.+|.|.|+.+ +++
T Consensus        11 ~~~v~~~~w~P~md-LiA~~t~~g~v~v~Rl-~~q   43 (47)
T PF12894_consen   11 PSRVSCMSWCPTMD-LIALGTEDGEVLVYRL-NWQ   43 (47)
T ss_pred             CCcEEEEEECCCCC-EEEEEECCCeEEEEEC-CCc
Confidence            45799999999999 7999999999999998 444

>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]

Probab=95.58  E-value=7.6  Score=46.75  Aligned_cols=112  Identities=11%  Similarity=0.009  Sum_probs=71.1

Q ss_pred             EEEEcCCCcEEEEEecCeEEEEEccCcceeeeeccCCCCcceeEEEEcCCCceEEEeecCCcEE--EEecCCceeeeeeC
Q 001415          925 RVQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVC--VFSAANLKLRCRIN 1002 (1082)
Q Consensus       925 ~~~fspdg~~l~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~dg~~l~t~s~dg~v~--vwd~~~~~~~~~~~ 1002 (1082)
                      -.+..|-..++.++....+++||+-..+.++......-...|+++++  .+..+++|..--.|.  .|+-+..+++.-..
T Consensus       938 v~Ai~~f~~~~LagvG~~l~~YdlG~K~lLRk~e~k~~p~~Is~iqt--~~~RI~VgD~qeSV~~~~y~~~~n~l~~fad 1015 (1205)
T KOG1898|consen  938 VGAICPFQGRVLAGVGRFLRLYDLGKKKLLRKCELKFIPNRISSIQT--YGARIVVGDIQESVHFVRYRREDNQLIVFAD 1015 (1205)
T ss_pred             ceEEeccCCEEEEecccEEEEeeCChHHHHhhhhhccCceEEEEEee--cceEEEEeeccceEEEEEEecCCCeEEEEeC
Confidence            34556777788888888999999988887776664333567777777  466777777555554  45555555543222


Q ss_pred             CCeecCCCCCCCCceeeEEEEeCCCCCeEEEEecCCcEEEEccCCCC
Q 001415         1003 PSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESE 1049 (1082)
Q Consensus      1003 ~~~~~~~gh~~~~v~~~~~~~~~~d~~~l~s~~~dg~v~vW~~~~~~ 1049 (1082)
                        ...|.       +.+++.+.  |-..+|.++.=|.+.+-.+....
T Consensus      1016 --D~~pR-------~Vt~~~~l--D~~tvagaDrfGNi~~vR~P~d~ 1051 (1205)
T KOG1898|consen 1016 --DPVPR-------HVTALELL--DYDTVAGADRFGNIAVVRIPPDV 1051 (1205)
T ss_pred             --CCccc-------eeeEEEEe--cCCceeeccccCcEEEEECCCcc
Confidence              22222       23345444  35678888887888777665544

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=95.50  E-value=2.7  Score=41.11  Aligned_cols=47  Identities=17%  Similarity=0.246  Sum_probs=39.2

Q ss_pred             EEEeecCCCeEEEee-CCeEEEEecCCCeeEEEECCCCCCeeEEEEec
Q 001415          791 CFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHP  837 (1082)
Q Consensus       791 ~l~~s~dg~~l~~~s-dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp  837 (1082)
                      .+++..+|.+.++.- .++|...|..+|+.+..+.-....+++++|--
T Consensus       216 Gm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsccFgG  263 (310)
T KOG4499|consen  216 GMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCFGG  263 (310)
T ss_pred             cceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEEecC
Confidence            455566788766664 68999999999999999998899999999964

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=95.28  E-value=1.5  Score=47.61  Aligned_cols=206  Identities=10%  Similarity=0.120  Sum_probs=94.9

Q ss_pred             CCcEEEEEe-CCCcEEEEecccc----eeeeeecc---cc----cCEEEEEEeCCCCEEEEEe--CC----CcEEEEEcC
Q 001415          839 DNNIIAIGM-DDSSIQIYNVRVD----EVKSKLKG---HS----KRITGLAFSHALNVLVSSG--AD----SQLCVWSSD  900 (1082)
Q Consensus       839 ~~~~lasg~-~dg~v~iwd~~~~----~~~~~l~~---h~----~~V~~l~~s~d~~~l~s~s--~D----g~i~vwd~~  900 (1082)
                      +.++|+..+ ..+.|+|.|+.+.    ++.+.+..   +.    +.-..+---|+|++++|+=  .+    |-+.+.|-+
T Consensus        86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~  165 (461)
T PF05694_consen   86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGE  165 (461)
T ss_dssp             -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TT
T ss_pred             cCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCc
Confidence            345555555 7789999999853    33344432   11    1112223347898888852  22    346777776


Q ss_pred             CcccccceeeeccCCCCCCCCCCcEEEEcCCCcEEEEEe---------------------cCeEEEEEccCcceeeeecc
Q 001415          901 GWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVH---------------------ETQLAIFETTKLECVKQWVP  959 (1082)
Q Consensus       901 ~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~~---------------------d~~i~iwd~~~~~~~~~~~~  959 (1082)
                      +.+...  ......+..   ..-..+-+.|....++++.                     ..++.+||+.+.+.++++..
T Consensus       166 tf~v~g--~We~~~~~~---~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idL  240 (461)
T PF05694_consen  166 TFEVKG--RWEKDRGPQ---PFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDL  240 (461)
T ss_dssp             T--EEE--E--SB-TT---------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES
T ss_pred             cccccc--eeccCCCCC---CCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEec
Confidence            633221  111111111   2336677888888888743                     24799999999999999987


Q ss_pred             CCCCcceeEEEEcCCC--ceEEEee-cCCcEE-EEecCCcee----eeeeCCCe---e-cCC---CCCCCCceeeEEEEe
Q 001415          960 RESSAPITHATFSCDS--QLVYACF-LDATVC-VFSAANLKL----RCRINPSA---Y-LPA---GVSSSNVHPLVIAAH 1024 (1082)
Q Consensus       960 ~~h~~~i~~l~~s~dg--~~l~t~s-~dg~v~-vwd~~~~~~----~~~~~~~~---~-~~~---gh~~~~v~~~~~~~~ 1024 (1082)
                      ......+..|.|..|-  .+=++++ -.++|. +|.-+.++-    +..+....   + +|.   +.....-.++.+..+
T Consensus       241 g~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iS  320 (461)
T PF05694_consen  241 GEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILIS  320 (461)
T ss_dssp             -TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-
T ss_pred             CCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEc
Confidence            5544567788887653  3322222 333443 333344432    11222111   0 000   000001134678888


Q ss_pred             CCCCCeEEEEecCCcEEEEccCCCC
Q 001415         1025 PQEPNEFALGLSDGGVHVFEPLESE 1049 (1082)
Q Consensus      1025 ~~d~~~l~s~~~dg~v~vW~~~~~~ 1049 (1082)
                      .+|..+.++.-.+|.|+.||++...
T Consensus       321 lDDrfLYvs~W~~GdvrqYDISDP~  345 (461)
T PF05694_consen  321 LDDRFLYVSNWLHGDVRQYDISDPF  345 (461)
T ss_dssp             TTS-EEEEEETTTTEEEEEE-SSTT
T ss_pred             cCCCEEEEEcccCCcEEEEecCCCC
Confidence            8777677788889999999999877

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=95.27  E-value=0.046  Score=52.97  Aligned_cols=102  Identities=16%  Similarity=0.212  Sum_probs=68.7

Q ss_pred             eEEEeeCCeEEEEecCCCeeEE-EECCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEecccceeeeeecccc-cCEEEEE
Q 001415          800 YVMSASGGKISLFNMMTFKTMA-TFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHS-KRITGLA  877 (1082)
Q Consensus       800 ~l~~~sdg~i~iwd~~~~~~~~-~~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~-~~V~~l~  877 (1082)
                      +++.+++|.|.+|+..-..... .+......+-+..-.-+++.+..++..||.||.|++.-++.+.....|. .++..+.
T Consensus        73 ~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~i  152 (238)
T KOG2444|consen   73 LMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEELI  152 (238)
T ss_pred             EEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCceeeeeccccCCCcceeE
Confidence            3444458999998876221111 1111222233322222255689999999999999999998888888887 6666777


Q ss_pred             EeCCCCEEEEE--eCCCcEEEEEcCC
Q 001415          878 FSHALNVLVSS--GADSQLCVWSSDG  901 (1082)
Q Consensus       878 ~s~d~~~l~s~--s~Dg~i~vwd~~~  901 (1082)
                      .+..++.++++  |.|..++.|++..
T Consensus       153 vv~sd~~i~~a~~S~d~~~k~W~ve~  178 (238)
T KOG2444|consen  153 VVGSDEFLKIADTSHDRVLKKWNVEK  178 (238)
T ss_pred             EecCCceEEeeccccchhhhhcchhh
Confidence            77777777777  7788888888766

>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]

Probab=95.05  E-value=1.2  Score=42.73  Aligned_cols=178  Identities=10%  Similarity=0.034  Sum_probs=97.6

Q ss_pred             CCCeEEEee---CCeEEEEecCCCeeEEEECCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEecccceeeeeecccccCE
Q 001415          797 NDSYVMSAS---GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRI  873 (1082)
Q Consensus       797 dg~~l~~~s---dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V  873 (1082)
                      +|.++.+.+   ...|++||+.+++.+....-....+..=-...-+..+.+-.-.+|.-.++|..+-+++..+.- .+.=
T Consensus        55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~y-~GeG  133 (262)
T COG3823          55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFSY-EGEG  133 (262)
T ss_pred             CCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhhhccccc-CCcc
Confidence            455666554   356999999999887765433222211111111233444556789999999999888877652 2334


Q ss_pred             EEEEEeCCCCEEEEEeCCCcEEEEEcCCcccccceeeeccCCCCCCCCCCcEEEEcCCCcEEEE-EecCeEEEEEccCcc
Q 001415          874 TGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFETTKLE  952 (1082)
Q Consensus       874 ~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~-~~d~~i~iwd~~~~~  952 (1082)
                      +.++  .|++-|+.++...+++.-|.++....... .....+..-  ..+..+.|- ||...|- -....|...|.++|+
T Consensus       134 WgLt--~d~~~LimsdGsatL~frdP~tfa~~~~v-~VT~~g~pv--~~LNELE~V-dG~lyANVw~t~~I~rI~p~sGr  207 (262)
T COG3823         134 WGLT--SDDKNLIMSDGSATLQFRDPKTFAELDTV-QVTDDGVPV--SKLNELEWV-DGELYANVWQTTRIARIDPDSGR  207 (262)
T ss_pred             eeee--cCCcceEeeCCceEEEecCHHHhhhcceE-EEEECCeec--ccccceeee-ccEEEEeeeeecceEEEcCCCCc
Confidence            5554  46666777766677777776664332211 111222110  122222222 3333333 233445555666666


Q ss_pred             eeeeeccC----------CCCcceeEEEEcCCC-ceEEEe
Q 001415          953 CVKQWVPR----------ESSAPITHATFSCDS-QLVYAC  981 (1082)
Q Consensus       953 ~~~~~~~~----------~h~~~i~~l~~s~dg-~~l~t~  981 (1082)
                      .+..+...          .|..-.+.+++.|++ ++++||
T Consensus       208 V~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG  247 (262)
T COG3823         208 VVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG  247 (262)
T ss_pred             EEEEEEccCCchhcCccccccccccceeecCcCCeEEEec
Confidence            65544322          234567889999987 555655

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=94.75  E-value=1.4  Score=45.01  Aligned_cols=158  Identities=11%  Similarity=0.027  Sum_probs=106.2

Q ss_pred             CEEEEEEeCCCCEEEEEeCCC--cEEEEEcCCcccccceeeeccCCCCCCCCCCcEEEEcCCCcEEEEEecCeEEEEEcc
Q 001415          872 RITGLAFSHALNVLVSSGADS--QLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETT  949 (1082)
Q Consensus       872 ~V~~l~~s~d~~~l~s~s~Dg--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~~d~~i~iwd~~  949 (1082)
                      -...+.|..+|.++-|.|.-|  .|+.+|+.+++......+..  ...     -..++...|.-+..+=.++...+||.+
T Consensus        46 FTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~--~~F-----gEGit~~~d~l~qLTWk~~~~f~yd~~  118 (264)
T PF05096_consen   46 FTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPP--RYF-----GEGITILGDKLYQLTWKEGTGFVYDPN  118 (264)
T ss_dssp             EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TT--T-------EEEEEEETTEEEEEESSSSEEEEEETT
T ss_pred             cCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCc--ccc-----ceeEEEECCEEEEEEecCCeEEEEccc
Confidence            346788878898999988776  69999999987543332221  111     145666666666666688999999999


Q ss_pred             CcceeeeeccCCCCcceeEEEEcCCCceEEEeecCCcEEEEecCCceeeeeeCCCeecCCCCCCCCc-eeeEEEEeCCCC
Q 001415          950 KLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNV-HPLVIAAHPQEP 1028 (1082)
Q Consensus       950 ~~~~~~~~~~~~h~~~i~~l~~s~dg~~l~t~s~dg~v~vwd~~~~~~~~~~~~~~~~~~gh~~~~v-~~~~~~~~~~d~ 1028 (1082)
                      +.+.+.++...+   .=+.++  .||+.|+.+.....+..+|..+.+....+....    +  +..+ ..--+-|.  +|
T Consensus       119 tl~~~~~~~y~~---EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~----~--g~pv~~LNELE~i--~G  185 (264)
T PF05096_consen  119 TLKKIGTFPYPG---EGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTD----N--GRPVSNLNELEYI--NG  185 (264)
T ss_dssp             TTEEEEEEE-SS---S--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EE----T--TEE---EEEEEEE--TT
T ss_pred             cceEEEEEecCC---cceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEE----C--CEECCCcEeEEEE--cC
Confidence            999999887543   445556  578888888777889999999988888776322    1  1111 11235555  47


Q ss_pred             CeEEEEecCCcEEEEccCCCC
Q 001415         1029 NEFALGLSDGGVHVFEPLESE 1049 (1082)
Q Consensus      1029 ~~l~s~~~dg~v~vW~~~~~~ 1049 (1082)
                      ...|=.-....|...|+.+|+
T Consensus       186 ~IyANVW~td~I~~Idp~tG~  206 (264)
T PF05096_consen  186 KIYANVWQTDRIVRIDPETGK  206 (264)
T ss_dssp             EEEEEETTSSEEEEEETTT-B
T ss_pred             EEEEEeCCCCeEEEEeCCCCe
Confidence            788888888889999999998

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]

Probab=94.69  E-value=0.05  Score=62.64  Aligned_cols=180  Identities=13%  Similarity=0.196  Sum_probs=104.7

Q ss_pred             CeEEEEecC--CCeeEEE-----ECCCCCCeeEEEEecC--CCcEEEEEeCCCcEEEEecccceeeeeecccccCEEEEE
Q 001415          807 GKISLFNMM--TFKTMAT-----FMPPPPAATFLAFHPQ--DNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLA  877 (1082)
Q Consensus       807 g~i~iwd~~--~~~~~~~-----~~~~~~~v~~l~~sp~--~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~  877 (1082)
                      |.+.+|+++  .|+....     .......+.-+.|.|-  ..-++..+..++.|++........ ..+++|...++.++
T Consensus       153 g~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~-~l~rsHs~~~~d~a  231 (1283)
T KOG1916|consen  153 GELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGGEIRLLNINRALR-SLFRSHSQRVTDMA  231 (1283)
T ss_pred             hhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCCCceeEeeechHHH-HHHHhcCCCcccHH
Confidence            678888876  3332222     2222333444555441  456778888899999887665432 45566877766654


Q ss_pred             -----------EeCCCCEEEEEeCCCcEEEEEcCCcccccceeeeccCCCCCCCCCCcEEEEcCC-------Cc--EEEE
Q 001415          878 -----------FSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQD-------QI--HFLV  937 (1082)
Q Consensus       878 -----------~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspd-------g~--~l~~  937 (1082)
                                 .||||+.+|.++.||.++.|.+.-.....-+++...+.|..  ..-.|.-|...       +.  ++++
T Consensus       232 ~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~~rclhewkphd~--~p~vC~lc~~~~~~~v~i~~w~~~It  309 (1283)
T KOG1916|consen  232 FFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIYITGKIVHRCLHEWKPHDK--HPRVCWLCHKQEILVVSIGKWVLRIT  309 (1283)
T ss_pred             HHhhchhhheeeCCCCcEEEEeecCCccceeeeeeeccccHhhhhccCCCCC--CCceeeeeccccccCCccceeEEEEe
Confidence                       48999999999999999999876533333344444444432  22223323332       22  2333


Q ss_pred             Ee--cCeEEEEEccCcceeeeeccCCCCcceeEEEEcCCCce------------EEEeecCCcEEEEecCC
Q 001415          938 VH--ETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQL------------VYACFLDATVCVFSAAN  994 (1082)
Q Consensus       938 ~~--d~~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~dg~~------------l~t~s~dg~v~vwd~~~  994 (1082)
                      +.  ...+++|.....+|...+.    ...|..+. -+||+.            ++..+.|++|.+|.-..
T Consensus       310 ttd~nre~k~w~~a~w~Cll~~~----~d~v~iV~-p~~~~v~~~~~~~~~~~~~v~r~v~~~i~~~qn~~  375 (1283)
T KOG1916|consen  310 TTDVNREEKFWAEAPWQCLLDKL----IDGVQIVG-PHDGEVTDLSMCQWMTTRLVSRSVDGTIKIWQNRK  375 (1283)
T ss_pred             cccCCcceeEeeccchhhhhhhc----ccceEeec-CCCccccchhhhHHHHHHHHHhhhHHHHHHhhcch
Confidence            33  3568899888777763332    22344444 334431            34456788888886443

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=94.68  E-value=0.74  Score=52.12  Aligned_cols=91  Identities=11%  Similarity=0.097  Sum_probs=61.4

Q ss_pred             ecccceeeeeecccccCEEEEEEeCCCCEEEEEeCCCcEEEEEcCCcccccceeeeccCCCCCCCCCCcEEEEcCCCcEE
Q 001415          856 NVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHF  935 (1082)
Q Consensus       856 d~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l  935 (1082)
                      |+-.|..... -.|.+.|--+..+..+..|..-+..-.+.++|+.+.+.  ..++          .-.+.+.|-|-...+
T Consensus       324 dli~g~~~~~-inh~~~vdwielne~~~kllfrdkk~kl~l~di~s~qk--smil----------nfcsymqwvp~sdvi  390 (1636)
T KOG3616|consen  324 DLIGGQNEGF-INHEGAVDWIELNERAHKLLFRDKKLKLHLVDIESCQK--SMIL----------NFCSYMQWVPGSDVI  390 (1636)
T ss_pred             ecccCccccc-ccccccccceeccchhhhhhcccccceeEEEEcccchH--HHHH----------HHhhhheeccCcceE
Confidence            4444544333 35899998888888887788777777789999988442  1111          123678899999988


Q ss_pred             EEEecCeEEEE-EccCcceeeeecc
Q 001415          936 LVVHETQLAIF-ETTKLECVKQWVP  959 (1082)
Q Consensus       936 ~~~~d~~i~iw-d~~~~~~~~~~~~  959 (1082)
                      ++-+...++|| +++..+.+..+..
T Consensus       391 vaqn~dnl~iwyn~d~peqvt~~ki  415 (1636)
T KOG3616|consen  391 VAQNGDNLCIWYNIDAPEQVTMFKI  415 (1636)
T ss_pred             EecCCCceEEEecCCcchhheeeEe
Confidence            88666778887 4555555555543

>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118

Probab=94.58  E-value=6.5  Score=40.61  Aligned_cols=207  Identities=10%  Similarity=0.113  Sum_probs=122.3

Q ss_pred             CccEEEeecCCCeEEEee-CCeEEEEecC-------CCeeEEEECC-----CCCCeeEEEEecCCCc------------E
Q 001415          788 AVPCFALSKNDSYVMSAS-GGKISLFNMM-------TFKTMATFMP-----PPPAATFLAFHPQDNN------------I  842 (1082)
Q Consensus       788 ~i~~l~~s~dg~~l~~~s-dg~i~iwd~~-------~~~~~~~~~~-----~~~~v~~l~~sp~~~~------------~  842 (1082)
                      ....++++|.+.+-++.. .+...+||..       ....+.++..     .....+.+.|+. ...            .
T Consensus        24 N~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~-~~~F~vt~~g~~~~a~  102 (336)
T TIGR03118        24 NAWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNG-SDTFVVSGEGITGPSR  102 (336)
T ss_pred             ccceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeC-CCceEEcCCCccccee
Confidence            356799999988776665 4889999986       1223334442     234577888875 222            2


Q ss_pred             EEEEeCCCcEEEEeccccee-----eeeec-ccccCE-EEEEEeCC--CCEEEEE-eCCCcEEEEEcCCccccc-ceee-
Q 001415          843 IAIGMDDSSIQIYNVRVDEV-----KSKLK-GHSKRI-TGLAFSHA--LNVLVSS-GADSQLCVWSSDGWEKQK-NRFL-  910 (1082)
Q Consensus       843 lasg~~dg~v~iwd~~~~~~-----~~~l~-~h~~~V-~~l~~s~d--~~~l~s~-s~Dg~i~vwd~~~~~~~~-~~~~-  910 (1082)
                      ++.+++||+|.-|...-+..     ...+. +..+.| ..+++...  +.+|..+ -..++|.|+|-.-..... ..+. 
T Consensus       103 Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F~D  182 (336)
T TIGR03118       103 FLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSFID  182 (336)
T ss_pred             EEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCCCccC
Confidence            45678999999998543222     11222 112333 34565533  4555544 367889999754421100 0000 


Q ss_pred             -eccCCCCCCCCCCcEEEEcCCCcEEEE-E-------------ecCeEEEEEccCcceeeeeccCCCCcceeEEEEcC--
Q 001415          911 -QIPTGRTPTAQSDTRVQFHQDQIHFLV-V-------------HETQLAIFETTKLECVKQWVPRESSAPITHATFSC--  973 (1082)
Q Consensus       911 -~~~~~~~~~~~~v~~~~fspdg~~l~~-~-------------~d~~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~--  973 (1082)
                       .++.+..+     ..|.-- .+++.++ +             .-|.|-+||. .|..++.+...+.-...+.|+..|  
T Consensus       183 P~iPagyAP-----FnIqni-g~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~-~G~l~~r~as~g~LNaPWG~a~APa~  255 (336)
T TIGR03118       183 PALPAGYAP-----FNVQNL-GGTLYVTYAQQDADRNDEVAGAGLGYVNVFTL-NGQLLRRVASSGRLNAPWGLAIAPES  255 (336)
T ss_pred             CCCCCCCCC-----cceEEE-CCeEEEEEEecCCcccccccCCCcceEEEEcC-CCcEEEEeccCCcccCCceeeeChhh
Confidence             01111111     111111 2333333 2             1257889987 578888887666667778888865  


Q ss_pred             ----CCceEEEeecCCcEEEEecCCceeeeeeC
Q 001415          974 ----DSQLVYACFLDATVCVFSAANLKLRCRIN 1002 (1082)
Q Consensus       974 ----dg~~l~t~s~dg~v~vwd~~~~~~~~~~~ 1002 (1082)
                          .|.+|+---.||+|..||..+|+.+..+.
T Consensus       256 FG~~sg~lLVGNFGDG~InaFD~~sG~~~g~L~  288 (336)
T TIGR03118       256 FGSLSGALLVGNFGDGTINAYDPQSGAQLGQLL  288 (336)
T ss_pred             hCCCCCCeEEeecCCceeEEecCCCCceeeeec
Confidence                46677766689999999999999988877

This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.

>PF14727 PHTB1_N: PTHB1 N-terminus

Probab=94.55  E-value=9.7  Score=42.43  Aligned_cols=283  Identities=11%  Similarity=0.080  Sum_probs=146.8

Q ss_pred             CceeeecccCCeEEEeeccccccCCCCCcccccCccccCCCCcceeecccCCCCCCCCccEEEee-----cCCCeEEEee
Q 001415          731 GNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALS-----KNDSYVMSAS  805 (1082)
Q Consensus       731 ~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s-----~dg~~l~~~s  805 (1082)
                      ...+++|+..|.++||+.......++.-                ++...     -..+|..+..-     .+...||+-.
T Consensus        37 ~d~IivGS~~G~LrIy~P~~~~~~~~~l----------------llE~~-----l~~PILqv~~G~F~s~~~~~~LaVLh   95 (418)
T PF14727_consen   37 SDKIIVGSYSGILRIYDPSGNEFQPEDL----------------LLETQ-----LKDPILQVECGKFVSGSEDLQLAVLH   95 (418)
T ss_pred             ccEEEEeccccEEEEEccCCCCCCCccE----------------EEEEe-----cCCcEEEEEeccccCCCCcceEEEec
Confidence            3578999999999999764333222211                11111     23455555432     1334666666


Q ss_pred             CCeEEEEecCC--Ce-------eEEEECCCC--CCeeEEEEecC----CCcEEEEEeCCCcEEEEecccceeeeeecccc
Q 001415          806 GGKISLFNMMT--FK-------TMATFMPPP--PAATFLAFHPQ----DNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHS  870 (1082)
Q Consensus       806 dg~i~iwd~~~--~~-------~~~~~~~~~--~~v~~l~~sp~----~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~  870 (1082)
                      -.++.+|.+..  +.       .+..+..|.  .....+++-|-    +..+|++-+.||.+.+|+-+.-.....+.+ .
T Consensus        96 P~kl~vY~v~~~~g~~~~g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~-~  174 (418)
T PF14727_consen   96 PRKLSVYSVSLVDGTVEHGNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPD-F  174 (418)
T ss_pred             CCEEEEEEEEecCCCcccCcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCC-C
Confidence            67788887731  11       112222222  12233333332    246899999999999999776544444443 2


Q ss_pred             cCEEEEEEeCCCCEEEEEeCCCcEEEEEcCCccccc----------------ceee---eccCCCCCCCCCCcEEEEcCC
Q 001415          871 KRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQK----------------NRFL---QIPTGRTPTAQSDTRVQFHQD  931 (1082)
Q Consensus       871 ~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~----------------~~~~---~~~~~~~~~~~~v~~~~fspd  931 (1082)
                      --...++|.+.-..+++++.+..|.-|....-....                .+..   ...-|..  .-.+..+.++..
T Consensus       175 llPgPl~Y~~~tDsfvt~sss~~l~~Yky~~La~~s~~~~~~~~~~~~~~~~k~l~~dWs~nlGE~--~l~i~v~~~~~~  252 (418)
T PF14727_consen  175 LLPGPLCYCPRTDSFVTASSSWTLECYKYQDLASASEASSRQSGTEQDISSGKKLNPDWSFNLGEQ--ALDIQVVRFSSS  252 (418)
T ss_pred             CCCcCeEEeecCCEEEEecCceeEEEecHHHhhhccccccccccccccccccccccceeEEECCce--eEEEEEEEcCCC
Confidence            222346788888889999988888888764310000                0000   0000000  011223333434


Q ss_pred             CcEEEEEecCeEEEEEccCcceeeeeccCCCCcc--eeEEEEcCCCc---eEEEeecCCcEEEEecCCceeeeeeCCCee
Q 001415          932 QIHFLVVHETQLAIFETTKLECVKQWVPRESSAP--ITHATFSCDSQ---LVYACFLDATVCVFSAANLKLRCRINPSAY 1006 (1082)
Q Consensus       932 g~~l~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~--i~~l~~s~dg~---~l~t~s~dg~v~vwd~~~~~~~~~~~~~~~ 1006 (1082)
                      -..+++-.++.+.+.+. +|......+.+.....  +..+.+..++.   .++.+++++++.||.-.+..--+.+.    
T Consensus       253 ~~~IvvLger~Lf~l~~-~G~l~~~krLd~~p~~~~~Y~~~~~~~~~~~~~llV~t~t~~LlVy~d~~L~WsA~l~----  327 (418)
T PF14727_consen  253 ESDIVVLGERSLFCLKD-NGSLRFQKRLDYNPSCFCPYRVPWYNEPSTRLNLLVGTHTGTLLVYEDTTLVWSAQLP----  327 (418)
T ss_pred             CceEEEEecceEEEEcC-CCeEEEEEecCCceeeEEEEEeecccCCCCceEEEEEecCCeEEEEeCCeEEEecCCC----
Confidence            44455545666666665 4554444433221111  11111112322   47888899999998754433333322    


Q ss_pred             cCCCCCCCCceeeEEEEeCCCCCeEEEEecCCcEEEEccCCCC
Q 001415         1007 LPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESE 1049 (1082)
Q Consensus      1007 ~~~gh~~~~v~~~~~~~~~~d~~~l~s~~~dg~v~vW~~~~~~ 1049 (1082)
                            ...+ .+.++..++-...+++-+.+|.+.+-=+.|.-
T Consensus       328 ------~~PV-al~v~~~~~~~G~IV~Ls~~G~L~v~YLGTdP  363 (418)
T PF14727_consen  328 ------HVPV-ALSVANFNGLKGLIVSLSDEGQLSVSYLGTDP  363 (418)
T ss_pred             ------CCCE-EEEecccCCCCceEEEEcCCCcEEEEEeCCCC
Confidence                  1112 22333333234578888999999887776654

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=94.50  E-value=10  Score=45.65  Aligned_cols=94  Identities=13%  Similarity=0.122  Sum_probs=57.1

Q ss_pred             CCCCccEEEeecCCCeEEEeeCCeEEEEecCC-CeeEEEECCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEecccceee
Q 001415          785 PEEAVPCFALSKNDSYVMSASGGKISLFNMMT-FKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVK  863 (1082)
Q Consensus       785 ~~~~i~~l~~s~dg~~l~~~sdg~i~iwd~~~-~~~~~~~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~  863 (1082)
                      ....|..+.++|+|++++..+...|.|..+.. ...-..+.+....+.|=.+.- +..++.                   
T Consensus        83 ~~f~v~~i~~n~~g~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v-~~~~~~-------------------  142 (717)
T PF10168_consen   83 PLFEVHQISLNPTGSLLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPV-DERFFT-------------------  142 (717)
T ss_pred             CceeEEEEEECCCCCEEEEEcCCcEEEEEeccccCccccccCCCcceeEEEEEe-chhhcc-------------------
Confidence            34578899999999999998877777766642 111122322222233222222 111111                   


Q ss_pred             eeecccccCEEEEEEeCC---CCEEEEEeCCCcEEEEEcCC
Q 001415          864 SKLKGHSKRITGLAFSHA---LNVLVSSGADSQLCVWSSDG  901 (1082)
Q Consensus       864 ~~l~~h~~~V~~l~~s~d---~~~l~s~s~Dg~i~vwd~~~  901 (1082)
                         ..+...|..+.|+|.   +..|+.-..|+++|+||+..
T Consensus       143 ---~~~~~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~~~  180 (717)
T PF10168_consen  143 ---SNSSLEIKQVRWHPWSESDSHLVVLTSDNTLRLYDISD  180 (717)
T ss_pred             ---CCCCceEEEEEEcCCCCCCCeEEEEecCCEEEEEecCC
Confidence               123456777888876   47788888889999999865

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118

Probab=94.45  E-value=7  Score=40.40  Aligned_cols=226  Identities=14%  Similarity=0.181  Sum_probs=125.7

Q ss_pred             ceeEEEEecCCCeEEEEeCCCeEEEEEccCC----ceeeEEEEeec-----cccCeeEEEecCCCCc----------eEE
Q 001415          422 SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGG----DEVRQHLEIDA-----HVGGVNDIAFSHPNKQ----------LCV  482 (1082)
Q Consensus       422 ~V~~l~~spdg~~las~~~d~~v~iwd~~~~----~~~~~~~~~~~-----h~~~V~~l~fs~dg~~----------~~l  482 (1082)
                      .-+.|+|+|.+.+-++....+...+||....    .......++..     -....+.+.|+.....          ..+
T Consensus        24 N~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~F  103 (336)
T TIGR03118        24 NAWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRF  103 (336)
T ss_pred             ccceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeE
Confidence            4578999999988888888889999998611    11111123331     2345777788644331          135


Q ss_pred             EEEeCCCcEEEEEccCCce-----eEEee-cCCcCe-EEEeeeecCCceEEEEec-CCCcEEEEecCCCCceeeecCCCC
Q 001415          483 ITCGDDKTIKVWDATNGAK-----QYIFE-GHEAPV-YSVCPHHKENIQFIFSTA-LDGKIKAWLYDNLGSRVDYEAPGR  554 (1082)
Q Consensus       483 ~s~s~d~~i~vwd~~~~~~-----~~~~~-~h~~~v-~~~~~~~~~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~  554 (1082)
                      +.+++||+|.-|...-+..     ...+. ...+.| ..+++.....+.+|+.+. ..++|.++|-.-...... ..-.+
T Consensus       104 if~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~-g~F~D  182 (336)
T TIGR03118       104 LFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLP-GSFID  182 (336)
T ss_pred             EEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCC-CCccC
Confidence            7788999999998543322     11222 112333 345555444445555554 468888886542211100 00000


Q ss_pred             ceEEEEEccCCCeeeecccccceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEEecCCCCCCcCeEEEcC------
Q 001415          555 WCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNK------  628 (1082)
Q Consensus       555 ~v~~~~~s~d~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~------  628 (1082)
                      +-.-.-|.|-+-..+.+  .-.+....-++++..=+.+..-|.|-++|. .|..++.+...+.......++..|      
T Consensus       183 P~iPagyAPFnIqnig~--~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~-~G~l~~r~as~g~LNaPWG~a~APa~FG~~  259 (336)
T TIGR03118       183 PALPAGYAPFNVQNLGG--TLYVTYAQQDADRNDEVAGAGLGYVNVFTL-NGQLLRRVASSGRLNAPWGLAIAPESFGSL  259 (336)
T ss_pred             CCCCCCCCCcceEEECC--eEEEEEEecCCcccccccCCCcceEEEEcC-CCcEEEEeccCCcccCCceeeeChhhhCCC
Confidence            00001111111100000  001111222333334455566789999996 578888887666666667788765      


Q ss_pred             CCCEEEEEECCCcEEEEEecCCc
Q 001415          629 DGCLLAVSTNDNGIKILATSDGI  651 (1082)
Q Consensus       629 dg~~l~~~~~dg~i~iwd~~~~~  651 (1082)
                      .|.+|+--..||+|..+|..++.
T Consensus       260 sg~lLVGNFGDG~InaFD~~sG~  282 (336)
T TIGR03118       260 SGALLVGNFGDGTINAYDPQSGA  282 (336)
T ss_pred             CCCeEEeecCCceeEEecCCCCc
Confidence            57788887889999999998883

This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.

>PRK13684 Ycf48-like protein; Provisional

Probab=94.38  E-value=9.5  Score=41.67  Aligned_cols=156  Identities=10%  Similarity=0.047  Sum_probs=89.0

Q ss_pred             CCCeeEEEEecCCCcEEEEEeCCCcEEE-Eecccceeeee-ecccccCEEEEEEeCCCCEEEEEeCCCcEEEEEcCCccc
Q 001415          827 PPAATFLAFHPQDNNIIAIGMDDSSIQI-YNVRVDEVKSK-LKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEK  904 (1082)
Q Consensus       827 ~~~v~~l~~sp~~~~~lasg~~dg~v~i-wd~~~~~~~~~-l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~  904 (1082)
                      ...+..+.+.| ++.++++|. .|.++. ++ ..++.-.. -..-...++++.+.++++.++.+ ..|.+++=..+.++.
T Consensus       172 ~g~~~~i~~~~-~g~~v~~g~-~G~i~~s~~-~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G~s  247 (334)
T PRK13684        172 AGVVRNLRRSP-DGKYVAVSS-RGNFYSTWE-PGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDLES  247 (334)
T ss_pred             cceEEEEEECC-CCeEEEEeC-CceEEEEcC-CCCCeEEEeeCCCcccceeeeEcCCCCEEEEe-cCCEEEEccCCCCCc
Confidence            45688899999 777776654 565543 22 11221111 22334678999999999876655 567654323343321


Q ss_pred             ccceeeeccCCCCCCCCCCcEEEEcCCCcEEEEEecCeEEEEEccCcceeeeecc-CCCCcceeEEEEcCCCceEEEeec
Q 001415          905 QKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWVP-RESSAPITHATFSCDSQLVYACFL  983 (1082)
Q Consensus       905 ~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~~d~~i~iwd~~~~~~~~~~~~-~~h~~~i~~l~~s~dg~~l~t~s~  983 (1082)
                      -.  ....+....  ...+..+.|.+++..++++.+|.+. ...+.|+.-..... ..-......+.|..+++.+++| .
T Consensus       248 W~--~~~~~~~~~--~~~l~~v~~~~~~~~~~~G~~G~v~-~S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~~G-~  321 (334)
T PRK13684        248 WS--KPIIPEITN--GYGYLDLAYRTPGEIWAGGGNGTLL-VSKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFVLG-Q  321 (334)
T ss_pred             cc--cccCCcccc--ccceeeEEEcCCCCEEEEcCCCeEE-EeCCCCCCCeECCcCCCCCcceEEEEEeCCCceEEEC-C
Confidence            11  111111100  1346788999999988888777665 34444544333321 1112357788888777776655 6


Q ss_pred             CCcEEEEec
Q 001415          984 DATVCVFSA  992 (1082)
Q Consensus       984 dg~v~vwd~  992 (1082)
                      .|.|.-|+-
T Consensus       322 ~G~il~~~~  330 (334)
T PRK13684        322 RGVLLRYVG  330 (334)
T ss_pred             CceEEEecC
Confidence            788877653

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=94.32  E-value=2.5  Score=49.72  Aligned_cols=195  Identities=10%  Similarity=0.060  Sum_probs=101.8

Q ss_pred             cEEEeecCCCeEEEee-C-C-----eEEEEecCCCeeEEEECCCCCCeeEEEEecCCCcEEEEEeCCC-----cEEEEec
Q 001415          790 PCFALSKNDSYVMSAS-G-G-----KISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDS-----SIQIYNV  857 (1082)
Q Consensus       790 ~~l~~s~dg~~l~~~s-d-g-----~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasg~~dg-----~v~iwd~  857 (1082)
                      .++++. +|.+.++|+ + |     .+..||..+.+-.. ...-...-...+...-+|.+.|+|+.||     +|..||.
T Consensus       326 ~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~-~a~M~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp  403 (571)
T KOG4441|consen  326 VGVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTNQWTP-VAPMNTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDP  403 (571)
T ss_pred             ccEEEE-CCEEEEEccccCCCcccceEEEecCCCCceec-cCCccCccccceeEEECCEEEEEeccccccccccEEEecC
Confidence            344443 446666665 5 2     37888887665322 1111111111222222788999999997     4777887


Q ss_pred             ccce--eeeeecccccCEEEEEEeCCCCEEEEEeCCC------cEEEEEcCCcccccceeeeccCCCCCCCCCCcEEEEc
Q 001415          858 RVDE--VKSKLKGHSKRITGLAFSHALNVLVSSGADS------QLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFH  929 (1082)
Q Consensus       858 ~~~~--~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg------~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fs  929 (1082)
                      .+.+  .+..+..........  .-+|+..+.||.|+      ++..||..++..............       ..++ .
T Consensus       404 ~~~~W~~va~m~~~r~~~gv~--~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~-------~g~a-~  473 (571)
T KOG4441|consen  404 VTNKWTPVAPMLTRRSGHGVA--VLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSG-------FGVA-V  473 (571)
T ss_pred             CCCcccccCCCCcceeeeEEE--EECCEEEEEcCcCCCccccceEEEEcCCCCceeecCCccccccc-------ceEE-E
Confidence            7643  222222211222222  23688888888664      467888887654333333332221       1233 3


Q ss_pred             CCCcEEEE-EecC-----eEEEEEccCcceeeeeccCCCCcceeEEEEcCCCceEEEeecCC-----cEEEEecCCceee
Q 001415          930 QDQIHFLV-VHET-----QLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDA-----TVCVFSAANLKLR  998 (1082)
Q Consensus       930 pdg~~l~~-~~d~-----~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~dg~~l~t~s~dg-----~v~vwd~~~~~~~  998 (1082)
                      -++...++ +.++     .+..||..+.+....-......+.+....  -+++..++|+.||     +|..||..+.+-.
T Consensus       474 ~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs~~g~~~--~~~~ly~vGG~~~~~~l~~ve~ydp~~d~W~  551 (571)
T KOG4441|consen  474 LNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSPRSAVGVVV--LGGKLYAVGGFDGNNNLNTVECYDPETDTWT  551 (571)
T ss_pred             ECCEEEEECCccCCCccceEEEEcCCCCceeEcccCccccccccEEE--ECCEEEEEecccCccccceeEEcCCCCCcee
Confidence            34555555 4444     37788887766654422212222222222  2677778888776     4666766655433

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.23  E-value=2.5  Score=48.75  Aligned_cols=147  Identities=14%  Similarity=0.226  Sum_probs=88.8

Q ss_pred             CCcEEEEecccceeeeeecccccCEEEEEEeCCCCEEEEEeCCCcEEEEEcCCcccccceeeeccCCCCCCCCCCcEEEE
Q 001415          849 DSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQF  928 (1082)
Q Consensus       849 dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~f  928 (1082)
                      --.|+||+.. |+.+..+.-..+++-.+.|+.+. .|+....||++.||++-.......     .-|.......|..+.|
T Consensus        63 ~~~I~If~~s-G~lL~~~~w~~~~lI~mgWs~~e-eLI~v~k~g~v~Vy~~~ge~ie~~-----svg~e~~~~~I~ec~~  135 (829)
T KOG2280|consen   63 RPYIRIFNIS-GQLLGRILWKHGELIGMGWSDDE-ELICVQKDGTVHVYGLLGEFIESN-----SVGFESQMSDIVECRF  135 (829)
T ss_pred             ceeEEEEecc-ccchHHHHhcCCCeeeecccCCc-eEEEEeccceEEEeecchhhhccc-----ccccccccCceeEEEE
Confidence            3468888865 66665554444578899999665 566677999999999987332211     0111111134555555


Q ss_pred             cCCCcEEEEEecCeEEEEEccCc---------------ceeeeec--------------------------cCCC-----
Q 001415          929 HQDQIHFLVVHETQLAIFETTKL---------------ECVKQWV--------------------------PRES-----  962 (1082)
Q Consensus       929 spdg~~l~~~~d~~i~iwd~~~~---------------~~~~~~~--------------------------~~~h-----  962 (1082)
                      ..+|-.+.+.++..+.+-+....               .|...+.                          ...|     
T Consensus       136 f~~GVavlt~~g~v~~i~~~~~~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~~~~~q~~~~~~q~~~~~~~  215 (829)
T KOG2280|consen  136 FHNGVAVLTVSGQVILINGVEEPKLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVGLHICQVEESRVQLHALSWP  215 (829)
T ss_pred             ecCceEEEecCCcEEEEcCCCcchhhhCCCCCCccCCCcceeEecCCCcceeEEeechhhhhcccceecccccccccCCC
Confidence            55665544433332222222110               0000000                          0001     


Q ss_pred             CcceeEEEEcCCCceEEEeecCCcEEEEecCCceeeeeeC
Q 001415          963 SAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRIN 1002 (1082)
Q Consensus       963 ~~~i~~l~~s~dg~~l~t~s~dg~v~vwd~~~~~~~~~~~ 1002 (1082)
                      .+.+..+..||+.++|+-=..+|.|.+-+.+..+..+.+.
T Consensus       216 ~~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~  255 (829)
T KOG2280|consen  216 NSSVVKISVSPNRRFLALYTETGKIWVVSIDLSQILCEFN  255 (829)
T ss_pred             CceEEEEEEcCCcceEEEEecCCcEEEEecchhhhhhccC
Confidence            2567788999999999999999999999999988888776

>PRK13684 Ycf48-like protein; Provisional

Probab=94.08  E-value=11  Score=41.20  Aligned_cols=157  Identities=10%  Similarity=0.002  Sum_probs=87.9

Q ss_pred             ccCEEEEEEeCCCCEEEEEeCCCcEEEEEcCCcccccceeeeccCCCCCCCCCCcEEEEcCCCcEEEEEecCeEEEEEcc
Q 001415          870 SKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETT  949 (1082)
Q Consensus       870 ~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~~d~~i~iwd~~  949 (1082)
                      .+.+.++.+.|++.+++++ ..|.+.. ..+.+. .........     ....+..+.+.++++.++++..|.+.+=..+
T Consensus       172 ~g~~~~i~~~~~g~~v~~g-~~G~i~~-s~~~gg-~tW~~~~~~-----~~~~l~~i~~~~~g~~~~vg~~G~~~~~s~d  243 (334)
T PRK13684        172 AGVVRNLRRSPDGKYVAVS-SRGNFYS-TWEPGQ-TAWTPHQRN-----SSRRLQSMGFQPDGNLWMLARGGQIRFNDPD  243 (334)
T ss_pred             cceEEEEEECCCCeEEEEe-CCceEEE-EcCCCC-CeEEEeeCC-----CcccceeeeEcCCCCEEEEecCCEEEEccCC
Confidence            4578899999998766555 4554432 211110 001111111     1146789999999998888877776543344


Q ss_pred             CcceeeeeccC--CCCcceeEEEEcCCCceEEEeecCCcEEEEecCCceeeeeeCCCeecCCCCCCCCceeeEEEEeCCC
Q 001415          950 KLECVKQWVPR--ESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQE 1027 (1082)
Q Consensus       950 ~~~~~~~~~~~--~h~~~i~~l~~s~dg~~l~t~s~dg~v~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~~~~~~~d 1027 (1082)
                      .|..-.....+  .....+.++.+.+++..++++ .+|.|. ...+.|+.-..+......+       .....+.|..  
T Consensus       244 ~G~sW~~~~~~~~~~~~~l~~v~~~~~~~~~~~G-~~G~v~-~S~d~G~tW~~~~~~~~~~-------~~~~~~~~~~--  312 (334)
T PRK13684        244 DLESWSKPIIPEITNGYGYLDLAYRTPGEIWAGG-GNGTLL-VSKDGGKTWEKDPVGEEVP-------SNFYKIVFLD--  312 (334)
T ss_pred             CCCccccccCCccccccceeeEEEcCCCCEEEEc-CCCeEE-EeCCCCCCCeECCcCCCCC-------cceEEEEEeC--
Confidence            44433222211  113457889999988866655 567655 4556666554433111111       1233566665  


Q ss_pred             CCeEEEEecCCcEEEEcc
Q 001415         1028 PNEFALGLSDGGVHVFEP 1045 (1082)
Q Consensus      1028 ~~~l~s~~~dg~v~vW~~ 1045 (1082)
                      ++.....+..|.|..|+-
T Consensus       313 ~~~~~~~G~~G~il~~~~  330 (334)
T PRK13684        313 PEKGFVLGQRGVLLRYVG  330 (334)
T ss_pred             CCceEEECCCceEEEecC
Confidence            234455677899888764

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=94.05  E-value=6.1  Score=47.52  Aligned_cols=67  Identities=24%  Similarity=0.356  Sum_probs=38.1

Q ss_pred             CCcEEEEEccccceeeeeceeeeccCC---CCcccccccc-cCCCCceeEEEEecCCCeEEEEeCCCeEEEE
Q 001415          380 VGDIGLWEVGSRERLVLRNFKVWDLGA---CSMPLQAALV-KDPGVSVNRVIWSPDGSLFGVAYSRHIVQIY  447 (1082)
Q Consensus       380 dg~i~iwd~~~~~~~~~~~~~~~d~~~---~~~~~~~~~~-~~h~~~V~~l~~spdg~~las~~~d~~v~iw  447 (1082)
                      |+.+.+||-.....+ ..+++.-+...   ...+++.-.. ..-.-.|..|.+||+|++||..|..|.+.+.
T Consensus        41 d~~L~vWd~~e~~l~-~~nlr~~~~~~~~~~~~~~q~L~~~~~~~f~v~~i~~n~~g~~lal~G~~~v~V~~  111 (717)
T PF10168_consen   41 DGDLFVWDSSECCLL-TVNLRSLESDAEGPAKSSYQKLLPSNPPLFEVHQISLNPTGSLLALVGPRGVVVLE  111 (717)
T ss_pred             CCEEEEEECCCCEEE-EEeeccccccccCccccCcceeecCCCCceeEEEEEECCCCCEEEEEcCCcEEEEE
Confidence            678888887654432 22332222111   1112221111 2334589999999999999999987754443

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=93.83  E-value=1.4  Score=51.07  Aligned_cols=124  Identities=10%  Similarity=0.139  Sum_probs=77.2

Q ss_pred             ECCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEecccceeeeeec-ccccCEEEEEEe--CCCCEEEEEeCCCcEEEEEc
Q 001415          823 FMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLK-GHSKRITGLAFS--HALNVLVSSGADSQLCVWSS  899 (1082)
Q Consensus       823 ~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~-~h~~~V~~l~~s--~d~~~l~s~s~Dg~i~vwd~  899 (1082)
                      +...-..++-+.-|. -++..++-+....+.|||...+.+...-. ...+.|.++.|.  |||+.+++.|-...|.+|.-
T Consensus        25 ~~T~i~~~~li~gss-~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q  103 (631)
T PF12234_consen   25 FETGISNPSLISGSS-IKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQ  103 (631)
T ss_pred             EecCCCCcceEeecc-cCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEc
Confidence            333334455555555 45555555555689999999886443322 356889999996  79999999999999999854


Q ss_pred             CCc----ccccceeeeccCCCCCCCCCCcEEEEcCCCcEEEEEecCeEEEEEc
Q 001415          900 DGW----EKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFET  948 (1082)
Q Consensus       900 ~~~----~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~~d~~i~iwd~  948 (1082)
                      ...    .......+........+...|.+..|.++|..++. .++++.|+|-
T Consensus       104 ~R~dy~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~-sGNqlfv~dk  155 (631)
T PF12234_consen  104 LRYDYTNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVG-SGNQLFVFDK  155 (631)
T ss_pred             cchhhhcCCcccceeEEEEeecCCCCCccceeEecCCeEEEE-eCCEEEEECC
Confidence            211    00111111111111112256889999999986554 4677888874

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]

Probab=93.81  E-value=1  Score=48.15  Aligned_cols=159  Identities=13%  Similarity=0.088  Sum_probs=99.4

Q ss_pred             CCCCccEEEeecCCCeEEEeeCCeEEEEecCCCeeEE-EE-CCCCC----Cee-EEEEecCCCcEEEEEeCCCcEEEE-e
Q 001415          785 PEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMA-TF-MPPPP----AAT-FLAFHPQDNNIIAIGMDDSSIQIY-N  856 (1082)
Q Consensus       785 ~~~~i~~l~~s~dg~~l~~~sdg~i~iwd~~~~~~~~-~~-~~~~~----~v~-~l~~sp~~~~~lasg~~dg~v~iw-d  856 (1082)
                      ....+..+-..|||+.+..-+..++.++++.+..... .+ ....+    .|+ ++..-. ++.-+.+++.||-|.-| |
T Consensus       219 ~~~~v~qllL~Pdg~~LYv~~g~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~-Gg~SLLv~~~dG~vsQWFd  297 (733)
T COG4590         219 PFSDVSQLLLTPDGKTLYVRTGSELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLS-GGFSLLVVHEDGLVSQWFD  297 (733)
T ss_pred             CccchHhhEECCCCCEEEEecCCeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHh-CceeEEEEcCCCceeeeee
Confidence            4566788889999999988888889999887543221 11 11112    133 223233 67777889999999887 4


Q ss_pred             cccc-e----eeeeecccccCEEEEEEeCCCCEEEEEeCCCcEEEEEcCCcccccceeeeccCCCCCCCCCCcEEEEcCC
Q 001415          857 VRVD-E----VKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQD  931 (1082)
Q Consensus       857 ~~~~-~----~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspd  931 (1082)
                      +..+ .    .++.++-...+|..+.--.+.+-+++-+..|++.++.-...+..   ..+...      ..+..+++||.
T Consensus       298 vr~~~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~l---L~~~~~------~~~~~~~~Sp~  368 (733)
T COG4590         298 VRRDGQPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLL---LFERAY------QAPQLVAMSPN  368 (733)
T ss_pred             eecCCCCcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCcce---ehhhhh------cCcceeeeCcc
Confidence            4332 1    22222222344444443344566888888999888765542211   111111      34578999999


Q ss_pred             CcEEEEEecCeEEEEEccCcce
Q 001415          932 QIHFLVVHETQLAIFETTKLEC  953 (1082)
Q Consensus       932 g~~l~~~~d~~i~iwd~~~~~~  953 (1082)
                      +.++++-..+.++++.+++...
T Consensus       369 ~~~Ll~e~~gki~~~~l~Nr~P  390 (733)
T COG4590         369 QAYLLSEDQGKIRLAQLENRNP  390 (733)
T ss_pred             cchheeecCCceEEEEecCCCC
Confidence            9999998889999998765443

>PHA02790 Kelch-like protein; Provisional

Probab=93.81  E-value=3.3  Score=47.92  Aligned_cols=183  Identities=11%  Similarity=-0.008  Sum_probs=90.3

Q ss_pred             cCCCeEEEee-C-----CeEEEEecCCCeeEEE--ECCCCCCeeEEEEecCCCcEEEEEeCCC--cEEEEecccce--ee
Q 001415          796 KNDSYVMSAS-G-----GKISLFNMMTFKTMAT--FMPPPPAATFLAFHPQDNNIIAIGMDDS--SIQIYNVRVDE--VK  863 (1082)
Q Consensus       796 ~dg~~l~~~s-d-----g~i~iwd~~~~~~~~~--~~~~~~~v~~l~~sp~~~~~lasg~~dg--~v~iwd~~~~~--~~  863 (1082)
                      .++.++++|+ +     ..+..||..+.+-...  +........ ++ .- ++.+.++|+.++  .+..||..+++  .+
T Consensus       270 ~~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~-~v-~~-~~~iYviGG~~~~~sve~ydp~~n~W~~~  346 (480)
T PHA02790        270 VGEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYAS-GV-PA-NNKLYVVGGLPNPTSVERWFHGDAAWVNM  346 (480)
T ss_pred             ECCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcce-EE-EE-CCEEEEECCcCCCCceEEEECCCCeEEEC
Confidence            3455556665 2     2477788876543322  211111122 22 23 678888888643  57888876542  33


Q ss_pred             eeecccccCEEEEEEeCCCCEEEEEeCCC---cEEEEEcCCcccccceeeeccCCCCCCCCCCcEEEEcCCCcEEEEEec
Q 001415          864 SKLKGHSKRITGLAFSHALNVLVSSGADS---QLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHE  940 (1082)
Q Consensus       864 ~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg---~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~~d  940 (1082)
                      ..+....... ++ ..-+|+..+.||.++   .+..||..+.+-........+.      .  ...+..-+|+..+.+  
T Consensus       347 ~~l~~~r~~~-~~-~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r------~--~~~~~~~~~~IYv~G--  414 (480)
T PHA02790        347 PSLLKPRCNP-AV-ASINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPH------Y--KSCALVFGRRLFLVG--  414 (480)
T ss_pred             CCCCCCCccc-EE-EEECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCcc------c--cceEEEECCEEEEEC--
Confidence            3332111111 12 233688888887654   4678888775432211111111      0  112223456655555  


Q ss_pred             CeEEEEEccCcceeeeeccCCCCcceeEEEEcCCCceEEEeecC-----CcEEEEecCCc
Q 001415          941 TQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLD-----ATVCVFSAANL  995 (1082)
Q Consensus       941 ~~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~dg~~l~t~s~d-----g~v~vwd~~~~  995 (1082)
                      |.+.+||..+.+....-...........+  .-+|+..++|+.+     .+|..||..++
T Consensus       415 G~~e~ydp~~~~W~~~~~m~~~r~~~~~~--v~~~~IYviGG~~~~~~~~~ve~Yd~~~~  472 (480)
T PHA02790        415 RNAEFYCESSNTWTLIDDPIYPRDNPELI--IVDNKLLLIGGFYRGSYIDTIEVYNNRTY  472 (480)
T ss_pred             CceEEecCCCCcEeEcCCCCCCccccEEE--EECCEEEEECCcCCCcccceEEEEECCCC
Confidence            45678888766554322211111122222  2367777878754     23555655544

>PHA03098 kelch-like protein; Provisional

Probab=93.75  E-value=2.7  Score=49.80  Aligned_cols=187  Identities=9%  Similarity=0.024  Sum_probs=92.4

Q ss_pred             cCCCeEEEee-C------CeEEEEecCCCeeEEEECC--CCCCeeEEEEecCCCcEEEEEeCCC-----cEEEEecccce
Q 001415          796 KNDSYVMSAS-G------GKISLFNMMTFKTMATFMP--PPPAATFLAFHPQDNNIIAIGMDDS-----SIQIYNVRVDE  861 (1082)
Q Consensus       796 ~dg~~l~~~s-d------g~i~iwd~~~~~~~~~~~~--~~~~v~~l~~sp~~~~~lasg~~dg-----~v~iwd~~~~~  861 (1082)
                      .++.+++.|+ +      ..+..||..+.+-...-..  .......+.  - ++++++.|+.++     .+..||..+++
T Consensus       293 ~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~--~-~~~lyv~GG~~~~~~~~~v~~yd~~~~~  369 (534)
T PHA03098        293 LNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTV--F-NNRIYVIGGIYNSISLNTVESWKPGESK  369 (534)
T ss_pred             ECCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEE--E-CCEEEEEeCCCCCEecceEEEEcCCCCc
Confidence            4556666664 2      2477888877654322111  111122222  2 677888888653     57778877653


Q ss_pred             e--eeeecccccCEEEEEEeCCCCEEEEEeCC------CcEEEEEcCCcccccceeeeccCCCCCCCCCCcEEEEcCCCc
Q 001415          862 V--KSKLKGHSKRITGLAFSHALNVLVSSGAD------SQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQI  933 (1082)
Q Consensus       862 ~--~~~l~~h~~~V~~l~~s~d~~~l~s~s~D------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~  933 (1082)
                      -  ...+...... .+++ .-++++.+.||.+      ..+..||+.+.+.......  +...     . ...+...+++
T Consensus       370 W~~~~~lp~~r~~-~~~~-~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~--p~~r-----~-~~~~~~~~~~  439 (534)
T PHA03098        370 WREEPPLIFPRYN-PCVV-NVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPL--PISH-----Y-GGCAIYHDGK  439 (534)
T ss_pred             eeeCCCcCcCCcc-ceEE-EECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCC--Cccc-----c-CceEEEECCE
Confidence            2  2222211111 1122 2367777777732      3578899887543221111  1111     1 1122334566


Q ss_pred             EEEEEe-c--------CeEEEEEccCcceeeeeccCCCCcceeEEEEcCCCceEEEeecC-----CcEEEEecCCcee
Q 001415          934 HFLVVH-E--------TQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLD-----ATVCVFSAANLKL  997 (1082)
Q Consensus       934 ~l~~~~-d--------~~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~dg~~l~t~s~d-----g~v~vwd~~~~~~  997 (1082)
                      ..+.+. .        ..+.+||..+.+....-...........+.+  +++.++.|+.+     +.|.+||..+.+-
T Consensus       440 iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W  515 (534)
T PHA03098        440 IYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCIF--NNKIYVVGGDKYEYYINEIEVYDDKTNTW  515 (534)
T ss_pred             EEEECCccCCCCCcccceEEEecCCCCceeeCCCCCcccccceEEEE--CCEEEEEcCCcCCcccceeEEEeCCCCEE
Confidence            555532 1        2388889877654432211111111122222  77777777754     4677888776643

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=93.47  E-value=2.1  Score=49.73  Aligned_cols=125  Identities=10%  Similarity=0.116  Sum_probs=76.0

Q ss_pred             cCeeEEEecCCCCceEEEEEeCCCcEEEEEccCCceeEEee-cCCcCeEEEeeeecCCceEEEEecCCCcEEEEecCCCC
Q 001415          466 GGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFE-GHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLG  544 (1082)
Q Consensus       466 ~~V~~l~fs~dg~~~~l~s~s~d~~i~vwd~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~  544 (1082)
                      ....-+.-|.-++  ..+.-+....+.|||...+.....-. ...+.|..+.|...++++.+++.|..+.|.++--....
T Consensus        30 ~~~~li~gss~~k--~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~d  107 (631)
T PF12234_consen   30 SNPSLISGSSIKK--IAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYD  107 (631)
T ss_pred             CCcceEeecccCc--EEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchh
Confidence            3444555555555  33334444579999998887554322 35788999999999999999999999999998432100


Q ss_pred             ceeeecCCCCceEEEEEccCCCeeeecccccceeEEEecCCCCEEEEEeCCCeEEEEEC
Q 001415          545 SRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDM  603 (1082)
Q Consensus       545 ~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~  603 (1082)
                      .... ...-..+..+.        +..++...+....|.++|..++++|  +.+.|+|-
T Consensus       108 y~~~-~p~w~~i~~i~--------i~~~T~h~Igds~Wl~~G~LvV~sG--Nqlfv~dk  155 (631)
T PF12234_consen  108 YTNK-GPSWAPIRKID--------ISSHTPHPIGDSIWLKDGTLVVGSG--NQLFVFDK  155 (631)
T ss_pred             hhcC-CcccceeEEEE--------eecCCCCCccceeEecCCeEEEEeC--CEEEEECC
Confidence            0000 00001222222        2334445677777877776555444  56777764

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=93.20  E-value=1  Score=54.02  Aligned_cols=146  Identities=13%  Similarity=0.112  Sum_probs=94.6

Q ss_pred             CCCccEEEeecCCCeEEEee--CC-eEEEEecCCCeeEE-----EEC------CCCCCeeEEEEecCCCcEEEEEeCCCc
Q 001415          786 EEAVPCFALSKNDSYVMSAS--GG-KISLFNMMTFKTMA-----TFM------PPPPAATFLAFHPQDNNIIAIGMDDSS  851 (1082)
Q Consensus       786 ~~~i~~l~~s~dg~~l~~~s--dg-~i~iwd~~~~~~~~-----~~~------~~~~~v~~l~~sp~~~~~lasg~~dg~  851 (1082)
                      .-.+..+...+|++..++..  +| .|..||+.+.....     -+.      .......++.|.|.=....|+...|+.
T Consensus       100 ~~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dls  179 (1405)
T KOG3630|consen  100 EIPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLS  179 (1405)
T ss_pred             cccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccc
Confidence            44566777788888766554  33 59999987543221     111      122345678888843445667778999


Q ss_pred             EEEEecccce-eeeeecccccCEEEEEEeCCCCEEEEEeCCCcEEEEEcCCcccccceeeeccCCCCCCCCCCcEEEEcC
Q 001415          852 IQIYNVRVDE-VKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQ  930 (1082)
Q Consensus       852 v~iwd~~~~~-~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fsp  930 (1082)
                      |++..+.-.. ....+. -...+++++|+|.|+.++.|...|++.-|...-..+..   +..+...  ....|.+|+|-.
T Consensus       180 l~V~~~~~~~~~v~s~p-~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~leik~~---ip~Pp~~--e~yrvl~v~Wl~  253 (1405)
T KOG3630|consen  180 LRVKSTKQLAQNVTSFP-VTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLEIKSE---IPEPPVE--ENYRVLSVTWLS  253 (1405)
T ss_pred             hhhhhhhhhhhhhcccC-cccceeeEEeccccceeeEecCCCeEEEeecccceeec---ccCCCcC--CCcceeEEEEec
Confidence            9988765332 222222 45678999999999999999999999999766522211   1111111  125789999988


Q ss_pred             CCcEEEE
Q 001415          931 DQIHFLV  937 (1082)
Q Consensus       931 dg~~l~~  937 (1082)
                      .-.++++
T Consensus       254 t~eflvv  260 (1405)
T KOG3630|consen  254 TQEFLVV  260 (1405)
T ss_pred             ceeEEEE
Confidence            8888876

>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]

Probab=93.14  E-value=0.015  Score=62.18  Aligned_cols=241  Identities=16%  Similarity=0.178  Sum_probs=134.1

Q ss_pred             eEEEEccCCceeeecccCCeEEEeeccccccCCCCCcccccCccccCCCCcceeecccCCCCCCCCccEEEeecCCCeEE
Q 001415          723 SRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVM  802 (1082)
Q Consensus       723 ~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~l~  802 (1082)
                      -...|.+.+..++.++.+..+..||-...                      .....     ........++|..+|..++
T Consensus        38 i~~~w~~e~~nlavaca~tiv~~YD~agq----------------------~~le~-----n~tg~aldm~wDkegdvla   90 (615)
T KOG2247|consen   38 IIHRWRPEGHNLAVACANTIVIYYDKAGQ----------------------VILEL-----NPTGKALDMAWDKEGDVLA   90 (615)
T ss_pred             ceeeEecCCCceehhhhhhHHHhhhhhcc----------------------eeccc-----CCchhHhhhhhccccchhh
Confidence            34566677766888888877776653321                      11110     1234445677777887666


Q ss_pred             Eee--CCeEEEEecCCCeeEEEECCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEecccceeeeeecccccCEEEEEEeC
Q 001415          803 SAS--GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSH  880 (1082)
Q Consensus       803 ~~s--dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~  880 (1082)
                      ...  .+.+.+||+.+....+.-.+....-.-+.|++ +...++.|...|.+.|++..+.+.+...-.|..+++++++.+
T Consensus        91 vlAek~~piylwd~n~eytqqLE~gg~~s~sll~wsK-g~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~l  169 (615)
T KOG2247|consen   91 VLAEKTGPIYLWDVNSEYTQQLESGGTSSKSLLAWSK-GTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTL  169 (615)
T ss_pred             hhhhcCCCeeechhhhhhHHHHhccCcchHHHHhhcc-CCccccccccccceEEEeccchhhhhhhcccccceeEEEecc
Confidence            554  58899999975322211111222222378999 889999999999999999888777666666999999999998


Q ss_pred             CCCEEEEEeCCCcEEEEEcCCcccccceeeeccCCCCCCCC---CCcEEEEcCCCcEEEEEecCeEEEE--Ecc--Ccce
Q 001415          881 ALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQ---SDTRVQFHQDQIHFLVVHETQLAIF--ETT--KLEC  953 (1082)
Q Consensus       881 d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~---~v~~~~fspdg~~l~~~~d~~i~iw--d~~--~~~~  953 (1082)
                      .+ +.+.++.|..+.+-...+....   ..+. .+.. ...   ....=.|..-|..+....-+.+.+.  .+.  .+..
T Consensus       170 Ed-~vil~dcd~~L~v~~qegeta~---ltev-ggep-dnm~~~y~k~n~w~kage~m~sVvsgKkhl~yak~nE~D~pv  243 (615)
T KOG2247|consen  170 ED-YVILCDCDNTLSVTTQEGETAS---LTEV-GGEP-DNMDFFYGKVNGWGKAGETMVSVVSGKKHLMYAKYNELDEPV  243 (615)
T ss_pred             cc-eeeecCcHHHHHHhhhccceee---eeec-cCcc-chhhhheeeeeccccccceeeeeeecHHHHHHHhhcCCCCcc
Confidence            77 4556666665544333321110   0000 0000 000   0011122233444443222221111  111  1111


Q ss_pred             eeeeccCCCCcceeEEEEcCCCceEEEeecCCcEEEEecCCceeeee
Q 001415          954 VKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCR 1000 (1082)
Q Consensus       954 ~~~~~~~~h~~~i~~l~~s~dg~~l~t~s~dg~v~vwd~~~~~~~~~ 1000 (1082)
                      -..+.  ...+.+.++.|--||.. ..+.+-|.|.+-.+.++++...
T Consensus       244 al~fq--~~~gni~cyrwylDg~i-~igf~ag~iV~iS~h~aeLgae  287 (615)
T KOG2247|consen  244 ALQFQ--EKYGNIHCYRWYLDGYI-LIGFDAGYIVSISAHNAELGAE  287 (615)
T ss_pred             ceEee--ecCCceeEEEEeccccc-cccccceeEEEEeccchHHHHH
Confidence            11222  22567888888888764 4466677777777777776543

>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]

Probab=92.53  E-value=22  Score=40.12  Aligned_cols=71  Identities=11%  Similarity=0.179  Sum_probs=45.8

Q ss_pred             CCceeEEEEecCCCeEEEEeCCCeEEEEEccCCceeeEEEEeeccccCeeEEEecCCCCceEEEEEeCCCcEEEEEccC
Q 001415          420 GVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATN  498 (1082)
Q Consensus       420 ~~~V~~l~~spdg~~las~~~d~~v~iwd~~~~~~~~~~~~~~~h~~~V~~l~fs~dg~~~~l~s~s~d~~i~vwd~~~  498 (1082)
                      ...|..+.+...|.+ -+|+.|| +..||..+++.+..  ........|..+.-+-.|+   +..|+.+| |.+.+.+.
T Consensus       164 d~~V~aLv~D~~g~l-WvgT~dG-L~~fd~~~gkalql--~s~~~dk~I~al~~d~qg~---LWVGTdqG-v~~~e~~G  234 (671)
T COG3292         164 DTPVVALVFDANGRL-WVGTPDG-LSYFDAGRGKALQL--ASPPLDKAINALIADVQGR---LWVGTDQG-VYLQEAEG  234 (671)
T ss_pred             CccceeeeeeccCcE-EEecCCc-ceEEccccceEEEc--CCCcchhhHHHHHHHhcCc---EEEEeccc-eEEEchhh
Confidence            347888888888854 4566777 77888888876642  1112235677777777777   66666554 55655443

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=92.49  E-value=23  Score=40.24  Aligned_cols=119  Identities=8%  Similarity=0.051  Sum_probs=67.0

Q ss_pred             CCCCceeEEEEecC----CCeEEEEeCCCeEEEEEccC-----Cceee-EEEEeeccccC--eeEEEecCCCCceEEEEE
Q 001415          418 DPGVSVNRVIWSPD----GSLFGVAYSRHIVQIYSYHG-----GDEVR-QHLEIDAHVGG--VNDIAFSHPNKQLCVITC  485 (1082)
Q Consensus       418 ~h~~~V~~l~~spd----g~~las~~~d~~v~iwd~~~-----~~~~~-~~~~~~~h~~~--V~~l~fs~dg~~~~l~s~  485 (1082)
                      |.-..|..++|+|-    -..|.+......|.||-+.-     ++.+. +..++. ..-+  -..+.|.|...  +|+.-
T Consensus        54 GqFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~-e~~pvLpQGCVWHPk~~--iL~VL  130 (671)
T PF15390_consen   54 GQFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIR-EPFPVLPQGCVWHPKKA--ILTVL  130 (671)
T ss_pred             eccceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeecc-CCcccCCCcccccCCCc--eEEEE
Confidence            33457999999993    32444455678899998762     22221 111111 0111  24678999888  45444


Q ss_pred             eCCCcEEEEEccC--CceeEEeecCCcCeEEEeeeecCCceEEEEecCCCcEEEEecC
Q 001415          486 GDDKTIKVWDATN--GAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYD  541 (1082)
Q Consensus       486 s~d~~i~vwd~~~--~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~  541 (1082)
                      .....-.+.+++.  .+....++ ..+.|.|.||..++. +++++.+..=.-++||-.
T Consensus       131 T~~dvSV~~sV~~d~srVkaDi~-~~G~IhCACWT~DG~-RLVVAvGSsLHSyiWd~~  186 (671)
T PF15390_consen  131 TARDVSVLPSVHCDSSRVKADIK-TSGLIHCACWTKDGQ-RLVVAVGSSLHSYIWDSA  186 (671)
T ss_pred             ecCceeEeeeeeeCCceEEEecc-CCceEEEEEecCcCC-EEEEEeCCeEEEEEecCc
Confidence            4333334556543  33334454 568899999987554 344444444456788754

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=92.49  E-value=3.4  Score=45.94  Aligned_cols=151  Identities=13%  Similarity=0.065  Sum_probs=80.6

Q ss_pred             CCeeEEEEecCCCcEEEEEe-----------CCC-cEEEEeccc--cee--eeeecccccCEEEEEEeCCCCEEEEEeCC
Q 001415          828 PAATFLAFHPQDNNIIAIGM-----------DDS-SIQIYNVRV--DEV--KSKLKGHSKRITGLAFSHALNVLVSSGAD  891 (1082)
Q Consensus       828 ~~v~~l~~sp~~~~~lasg~-----------~dg-~v~iwd~~~--~~~--~~~l~~h~~~V~~l~~s~d~~~l~s~s~D  891 (1082)
                      .....++|.+ +|+++++-.           ..+ .|.+++-.+  |+.  ...+.........|++.++| +++ ++.+
T Consensus        14 ~~P~~ia~d~-~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G-lyV-~~~~   90 (367)
T TIGR02604        14 RNPIAVCFDE-RGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG-VYV-ATPP   90 (367)
T ss_pred             CCCceeeECC-CCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC-EEE-eCCC
Confidence            3567788888 777776542           223 677776442  321  23333333456889999998 444 4444


Q ss_pred             CcEEEEEcCCccc---ccceeeeccCCC-CCCCCCCcEEEEcCCCcEEEE-Eec-------------------CeEEEEE
Q 001415          892 SQLCVWSSDGWEK---QKNRFLQIPTGR-TPTAQSDTRVQFHQDQIHFLV-VHE-------------------TQLAIFE  947 (1082)
Q Consensus       892 g~i~vwd~~~~~~---~~~~~~~~~~~~-~~~~~~v~~~~fspdg~~l~~-~~d-------------------~~i~iwd  947 (1082)
                      ...++.+.+....   ....++...... .........++|.|||.+.++ +..                   +.+.-++
T Consensus        91 ~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~  170 (367)
T TIGR02604        91 DILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYN  170 (367)
T ss_pred             eEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEe
Confidence            4233334433211   111222222211 001134678999999988776 311                   2344455


Q ss_pred             ccCcceeeeeccCCCCcceeEEEEcCCCceEEEeecC
Q 001415          948 TTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLD  984 (1082)
Q Consensus       948 ~~~~~~~~~~~~~~h~~~i~~l~~s~dg~~l~t~s~d  984 (1082)
                      .++++. ..+ ..+ ......++|+++|+++++-..+
T Consensus       171 pdg~~~-e~~-a~G-~rnp~Gl~~d~~G~l~~tdn~~  204 (367)
T TIGR02604       171 PDGGKL-RVV-AHG-FQNPYGHSVDSWGDVFFCDNDD  204 (367)
T ss_pred             cCCCeE-EEE-ecC-cCCCccceECCCCCEEEEccCC
Confidence            544432 222 223 3446789999999987765433

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>COG4257 Vgb Streptogramin lyase [Defense mechanisms]

Probab=92.46  E-value=14  Score=37.56  Aligned_cols=131  Identities=7%  Similarity=0.044  Sum_probs=74.5

Q ss_pred             CCCCcceeecccCCCCCCCCccEEEeecCCCeEEEeeCCeEEEEecCCCeeEEEECCC-CCCeeEEEEecCCCcEEEEEe
Q 001415          769 QPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPP-PPAATFLAFHPQDNNIIAIGM  847 (1082)
Q Consensus       769 ~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~l~~~sdg~i~iwd~~~~~~~~~~~~~-~~~v~~l~~sp~~~~~lasg~  847 (1082)
                      +.++.......+.............|.+.|.+-+++..|.---.|..+ ..+..+... ......++..| +|.+.++.-
T Consensus       130 dpkt~evt~f~lp~~~a~~nlet~vfD~~G~lWFt~q~G~yGrLdPa~-~~i~vfpaPqG~gpyGi~atp-dGsvwyasl  207 (353)
T COG4257         130 DPKTLEVTRFPLPLEHADANLETAVFDPWGNLWFTGQIGAYGRLDPAR-NVISVFPAPQGGGPYGICATP-DGSVWYASL  207 (353)
T ss_pred             cCcccceEEeecccccCCCcccceeeCCCccEEEeeccccceecCccc-CceeeeccCCCCCCcceEECC-CCcEEEEec
Confidence            455555555445444456677889999999998888633211112111 122222222 23466788889 777777666


Q ss_pred             CCCcEEEEecccce--eeeeecccccCEEEEEEeCCCCEEEEEeCCCcEEEEEcCC
Q 001415          848 DDSSIQIYNVRVDE--VKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDG  901 (1082)
Q Consensus       848 ~dg~v~iwd~~~~~--~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~  901 (1082)
                      .+..|-..|..++-  .+..-.+....-..+--+|.|+.-+|....+.+.-+|...
T Consensus       208 agnaiaridp~~~~aev~p~P~~~~~gsRriwsdpig~~wittwg~g~l~rfdPs~  263 (353)
T COG4257         208 AGNAIARIDPFAGHAEVVPQPNALKAGSRRIWSDPIGRAWITTWGTGSLHRFDPSV  263 (353)
T ss_pred             cccceEEcccccCCcceecCCCcccccccccccCccCcEEEeccCCceeeEeCccc
Confidence            67777777766652  1111112112233444567777777776677777777665

>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3

Probab=92.44  E-value=7.2  Score=38.32  Aligned_cols=148  Identities=11%  Similarity=0.130  Sum_probs=83.1

Q ss_pred             cEEEEEeCCCcEEEEeccc--ceeeeeecccccCEEEEEEeCCCCEEEEEeCCC------cEEEE-EcCCcccccceeee
Q 001415          841 NIIAIGMDDSSIQIYNVRV--DEVKSKLKGHSKRITGLAFSHALNVLVSSGADS------QLCVW-SSDGWEKQKNRFLQ  911 (1082)
Q Consensus       841 ~~lasg~~dg~v~iwd~~~--~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg------~i~vw-d~~~~~~~~~~~~~  911 (1082)
                      ..|..+...+.|.+|++..  .+.+.++..- +.|..+.++..|++|+|--.+.      .+|+| +.+...........
T Consensus        29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv-~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~v  107 (215)
T PF14761_consen   29 DALFVAASGCKVEVYDLEQEECPLLCTFSTV-GRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVRV  107 (215)
T ss_pred             ceEEEEcCCCEEEEEEcccCCCceeEEEcch-hheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCcEEE
Confidence            3444446677899999983  3555666644 8899999999999999864332      45664 22221000011110


Q ss_pred             ccCCC------------------CCCCCCCcEEEEcCCCcEEEEEecCeEEEEEccCcce-ee-----eec---cCCC-C
Q 001415          912 IPTGR------------------TPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLEC-VK-----QWV---PRES-S  963 (1082)
Q Consensus       912 ~~~~~------------------~~~~~~v~~~~fspdg~~l~~~~d~~i~iwd~~~~~~-~~-----~~~---~~~h-~  963 (1082)
                      ...||                  .+....+.+++.-|-.--|+++.++.+.+|.+..... ..     .|.   ...| .
T Consensus       108 RiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~~~~l~lf~l~~~~~~~~~~~~lDFe~~l~~~~~~  187 (215)
T PF14761_consen  108 RIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGCGNKLVLFTLKYQTIQSEKFSFLDFERSLIDHIDN  187 (215)
T ss_pred             EEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEcCCEEEEEEEEEEEEecccccEEechhhhhheecC
Confidence            11111                  0111456778888866667777788999998754433 11     111   0011 2


Q ss_pred             cceeEEEEcCCCceEEEeecCCcEEEEec
Q 001415          964 APITHATFSCDSQLVYACFLDATVCVFSA  992 (1082)
Q Consensus       964 ~~i~~l~~s~dg~~l~t~s~dg~v~vwd~  992 (1082)
                      -.+..++|  -+.|+|..+ +-.++|..+
T Consensus       188 ~~p~~v~i--c~~yiA~~s-~~ev~Vlkl  213 (215)
T PF14761_consen  188 FKPTQVAI--CEGYIAVMS-DLEVLVLKL  213 (215)
T ss_pred             ceEEEEEE--EeeEEEEec-CCEEEEEEE
Confidence            23455555  356888775 556666554

>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=92.39  E-value=0.42  Score=32.65  Aligned_cols=34  Identities=12%  Similarity=0.228  Sum_probs=25.4

Q ss_pred             eecCCCCCceEEEEecCCCeEEEEEcCC--CcEEEE
Q 001415          353 RTLNQGSSPMSMDFHPVQQTLLLVGTNV--GDIGLW  386 (1082)
Q Consensus       353 ~~~~h~~~v~~~~~spdg~~llasgs~d--g~i~iw  386 (1082)
                      +++.......+.+|||||++|+.++..+  |.-.||
T Consensus         3 ~~t~~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy   38 (39)
T PF07676_consen    3 QLTNSPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY   38 (39)
T ss_dssp             EES-SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred             CcccCCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence            4455666788999999999988888877  776666

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....

>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12

Probab=92.30  E-value=14  Score=39.32  Aligned_cols=191  Identities=10%  Similarity=0.056  Sum_probs=105.7

Q ss_pred             ccEEEeecCCCeEEE--ee---C--------CeEEEEecCCCeeEEEECCC------CCCeeEEEEecCCC----cEEE-
Q 001415          789 VPCFALSKNDSYVMS--AS---G--------GKISLFNMMTFKTMATFMPP------PPAATFLAFHPQDN----NIIA-  844 (1082)
Q Consensus       789 i~~l~~s~dg~~l~~--~s---d--------g~i~iwd~~~~~~~~~~~~~------~~~v~~l~~sp~~~----~~la-  844 (1082)
                      |..+...++|++-+.  |.   .        -+|.+||+.+.+.++++.-+      ......+.+...++    .++. 
T Consensus         3 V~~v~iD~~~rLWVlD~G~~~~~~~~~~~~~pKLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYI   82 (287)
T PF03022_consen    3 VQRVQIDECGRLWVLDSGRPNGLQPPKQVCPPKLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYI   82 (287)
T ss_dssp             EEEEEE-TTSEEEEEE-CCHSSSSTTGHTS--EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEE
T ss_pred             ccEEEEcCCCCEEEEeCCCcCCCCCCCCCCCcEEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEE
Confidence            455666666664443  21   1        26899999999988876533      23467777776322    2333 


Q ss_pred             EEeCCCcEEEEecccceeeeeeccc-------------------ccCEEEEEEeC---CCCEEEEEeCCCcEEEEEcCCc
Q 001415          845 IGMDDSSIQIYNVRVDEVKSKLKGH-------------------SKRITGLAFSH---ALNVLVSSGADSQLCVWSSDGW  902 (1082)
Q Consensus       845 sg~~dg~v~iwd~~~~~~~~~l~~h-------------------~~~V~~l~~s~---d~~~l~s~s~Dg~i~vwd~~~~  902 (1082)
                      +-...+.|.|+|+.+++..+.+..+                   ...+..++.+|   |+++|....-.+ -++|.+.+.
T Consensus        83 tD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss-~~ly~v~T~  161 (287)
T PF03022_consen   83 TDSGGPGLIVYDLATGKSWRVLHNSFSPDPDAGPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSS-RKLYRVPTS  161 (287)
T ss_dssp             EETTTCEEEEEETTTTEEEEEETCGCTTS-SSEEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT--SEEEEEEHH
T ss_pred             eCCCcCcEEEEEccCCcEEEEecCCcceeccccceeccCceEecCCCccccccCCCCCCccEEEEEeCCC-CcEEEEEHH
Confidence            3334468999999988765554322                   12366777765   777777766544 356666553


Q ss_pred             ccccceeeecc--------CCCCCCCCCCcEEEEcCCCcEEEE-EecCeEEEEEccCcc---eeeeeccCCC-CcceeEE
Q 001415          903 EKQKNRFLQIP--------TGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFETTKLE---CVKQWVPRES-SAPITHA  969 (1082)
Q Consensus       903 ~~~~~~~~~~~--------~~~~~~~~~v~~~~fspdg~~l~~-~~d~~i~iwd~~~~~---~~~~~~~~~h-~~~i~~l  969 (1082)
                      ...........        .|...  .....++++++|....+ ...+.|..|+..+.-   ....+..... -..+.++
T Consensus       162 ~L~~~~~~~~~~~~~~v~~lG~k~--~~s~g~~~D~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~  239 (287)
T PF03022_consen  162 VLRDPSLSDAQALASQVQDLGDKG--SQSDGMAIDPNGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDGL  239 (287)
T ss_dssp             HHCSTT--HHH-HHHT-EEEEE-----SECEEEEETTTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEEE
T ss_pred             HhhCccccccccccccceeccccC--CCCceEEECCCCcEEEecCCCCeEEEEeCCCCcCccchheeEEcCceeecccee
Confidence            21111100000        01100  23467889999998888 577899999987521   1222222222 3567888


Q ss_pred             EEcC--CCceEEEee
Q 001415          970 TFSC--DSQLVYACF  982 (1082)
Q Consensus       970 ~~s~--dg~~l~t~s  982 (1082)
                      .+.+  +|.+.+.++
T Consensus       240 ~i~~~~~g~L~v~sn  254 (287)
T PF03022_consen  240 KIDPEGDGYLWVLSN  254 (287)
T ss_dssp             EE-T--TS-EEEEE-
T ss_pred             eeccccCceEEEEEC
Confidence            8888  777666554

5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.

>cd08044 TAF5_NTD2 TAF5_NTD2 is the second conserved N-terminal region of TATA Binding Protein (TBP) Associated Factor 5 (TAF5), involved in forming Transcription Factor IID (TFIID)

Probab=92.29  E-value=0.36  Score=44.21  Aligned_cols=64  Identities=20%  Similarity=0.279  Sum_probs=51.8

Q ss_pred             ccchhhHHHHHHHHHHHHHhcCCHHHHHHHHHhccccccccCHHHHHHHHHHhccccccchhhhc
Q 001415           67 RYSMKIFFEIRKQKYLEALDKHDRAKAVEILVKDLKVFSTFNEELFKEITQLLTLENFRENEQLS  131 (1082)
Q Consensus        67 ~~~~~~~~~l~~~~~lell~~~~~~~a~~~l~~~l~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~  131 (1082)
                      ++.. ++|.++-+.||||+..|...+|..|+.+.-..+.....+.++.|+.+....++..++...
T Consensus        25 EL~~-lLyPiFvh~yL~lv~~~~~~~A~~F~~~f~~~~~~~~~~~i~~L~~i~~p~~l~~n~~~~   88 (133)
T cd08044          25 ELSQ-LLYPIFVHSYLDLVASGHLEEAKSFFERFSGDFEDSHSEDIKKLSSITTPEHLKENELAK   88 (133)
T ss_pred             HHHH-HHHHHHHHHHHHHHHCCCHHHHHHHHHHhhHhhHHHHHHHHHHHHccCCHHHHhhhHHHH
Confidence            4554 999999999999999999999999999776666666778888888777776666655443

The TATA Binding Protein (TBP) Associated Factor 5 (TAF5) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TAF5 contains three domains, two conserved sequence motifs at the N-terminal and one at the C-terminal region. TFIID is one of seven General Transcription Factors (GTF) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the preinitiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. In yeast and human cells, TAFs have been found as components of other complexes besides TFIID. TAF5 may play a major role in forming TFIID and its related complexes. TAFs from various

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=92.27  E-value=11  Score=43.74  Aligned_cols=226  Identities=12%  Similarity=0.104  Sum_probs=106.7

Q ss_pred             CCCceEEEEecCCCeEEEEEcCCCcEEEEEccccceeeeeceeeeccCCCCcccccccccCCCCceeEEEEecCCCeEEE
Q 001415          358 GSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGV  437 (1082)
Q Consensus       358 ~~~v~~~~~spdg~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las  437 (1082)
                      -+.+-++..+|....=+.  +..-.|+|++.. |+.+.+                  ++-.|. .+-.+.||.+..+|. 
T Consensus        43 ~gGpIAV~r~p~~~~~~~--~a~~~I~If~~s-G~lL~~------------------~~w~~~-~lI~mgWs~~eeLI~-   99 (829)
T KOG2280|consen   43 FGGPIAVTRSPSKLVPLY--SARPYIRIFNIS-GQLLGR------------------ILWKHG-ELIGMGWSDDEELIC-   99 (829)
T ss_pred             cCCceEEEeccccccccc--ccceeEEEEecc-ccchHH------------------HHhcCC-CeeeecccCCceEEE-
Confidence            344455555554321111  334557888764 444432                  234444 888999998776554 


Q ss_pred             EeCCCeEEEEEccCCceeeEEEEeeccccCeeEEEecCCCCceEEEEEeCCCcEEEE-EccCCceeEEeecC-CcCeEEE
Q 001415          438 AYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVW-DATNGAKQYIFEGH-EAPVYSV  515 (1082)
Q Consensus       438 ~~~d~~v~iwd~~~~~~~~~~~~~~~h~~~V~~l~fs~dg~~~~l~s~s~d~~i~vw-d~~~~~~~~~~~~h-~~~v~~~  515 (1082)
                      ...+|++++|++.....-............|..+.|..+|=  .+.+.  +|.+.+- +... ..++++..- .......
T Consensus       100 v~k~g~v~Vy~~~ge~ie~~svg~e~~~~~I~ec~~f~~GV--avlt~--~g~v~~i~~~~~-~~~~~~~diP~~~~~~~  174 (829)
T KOG2280|consen  100 VQKDGTVHVYGLLGEFIESNSVGFESQMSDIVECRFFHNGV--AVLTV--SGQVILINGVEE-PKLRKMPDIPYNELPKS  174 (829)
T ss_pred             EeccceEEEeecchhhhcccccccccccCceeEEEEecCce--EEEec--CCcEEEEcCCCc-chhhhCCCCCCccCCCc
Confidence            56999999999875432110011122334566666666553  23333  3444333 2221 122222210 0011111


Q ss_pred             eeeecCCceEEEEecCCCcEEEEecCCCCceeeecCCCCceEEEEEccCCCeeeecccccceeEEEecCCCCEEEEEeCC
Q 001415          516 CPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDD  595 (1082)
Q Consensus       516 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d  595 (1082)
                      ||.-..++. -       ...+-++.-.-...........+....+++..         ..+.-+.++|+.++++--...
T Consensus       175 ~Wt~~~~~~-~-------~~~ll~v~~~v~~~~~q~~~~~~q~~~~~~~~---------~~~~ki~VS~n~~~laLyt~~  237 (829)
T KOG2280|consen  175 CWTVFQPHR-Q-------STILLDVDVAVGLHICQVEESRVQLHALSWPN---------SSVVKISVSPNRRFLALYTET  237 (829)
T ss_pred             ceeEecCCC-c-------ceeEEeechhhhhcccceecccccccccCCCC---------ceEEEEEEcCCcceEEEEecC
Confidence            222111100 0       01111111000011111122223333333331         245556777777788888899


Q ss_pred             CeEEEEECCCcceEEEEecCCCCCCcCeEEEcCC
Q 001415          596 FSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKD  629 (1082)
Q Consensus       596 g~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~d  629 (1082)
                      |.|.+-+.+..++...+....+..+ ..++|..+
T Consensus       238 G~i~~vs~D~~~~lce~~~~~~~~p-~qm~Wcgn  270 (829)
T KOG2280|consen  238 GKIWVVSIDLSQILCEFNCTDHDPP-KQMAWCGN  270 (829)
T ss_pred             CcEEEEecchhhhhhccCCCCCCch-HhceeecC
Confidence            9999988887777766654433222 24555443

>PHA03098 kelch-like protein; Provisional

Probab=92.26  E-value=7.8  Score=45.87  Aligned_cols=152  Identities=11%  Similarity=0.129  Sum_probs=76.2

Q ss_pred             CCCEEEEEeCC-----CcEEEEEcCCcccccceeeeccCCCCCCCCCCcEEEEcCCCcEEEEEe---c----CeEEEEEc
Q 001415          881 ALNVLVSSGAD-----SQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVH---E----TQLAIFET  948 (1082)
Q Consensus       881 d~~~l~s~s~D-----g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~~---d----~~i~iwd~  948 (1082)
                      +++.++.||.+     ..+..||..+++......+....       .-.++ ..-+++..+.+.   +    +.+..||.
T Consensus       342 ~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r-------~~~~~-~~~~~~iYv~GG~~~~~~~~~~v~~yd~  413 (534)
T PHA03098        342 NNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPR-------YNPCV-VNVNNLIYVIGGISKNDELLKTVECFSL  413 (534)
T ss_pred             CCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCC-------ccceE-EEECCEEEEECCcCCCCcccceEEEEeC
Confidence            67788888865     34677887775432211111111       11122 233566666632   1    35788998


Q ss_pred             cCcceeeeeccCCCCcceeEEEEcCCCceEEEeecC--------CcEEEEecCCceeeeeeCCCeecCCCCCCCCceeeE
Q 001415          949 TKLECVKQWVPRESSAPITHATFSCDSQLVYACFLD--------ATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLV 1020 (1082)
Q Consensus       949 ~~~~~~~~~~~~~h~~~i~~l~~s~dg~~l~t~s~d--------g~v~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~ 1020 (1082)
                      .+.+....-.......  ...+...+++..+.|+.+        ..+.+||..+++-... .. ...+..  .+    ..
T Consensus       414 ~t~~W~~~~~~p~~r~--~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~-~~-~~~~r~--~~----~~  483 (534)
T PHA03098        414 NTNKWSKGSPLPISHY--GGCAIYHDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTEL-SS-LNFPRI--NA----SL  483 (534)
T ss_pred             CCCeeeecCCCCcccc--CceEEEECCEEEEECCccCCCCCcccceEEEecCCCCceeeC-CC-CCcccc--cc----eE
Confidence            7665433211111111  111223366777777643        2378888887654422 11 111111  11    11


Q ss_pred             EEEeCCCCCeEEEEecC-----CcEEEEccCCCCCccccC
Q 001415         1021 IAAHPQEPNEFALGLSD-----GGVHVFEPLESEGKWGVP 1055 (1082)
Q Consensus      1021 ~~~~~~d~~~l~s~~~d-----g~v~vW~~~~~~~~~~~~ 1055 (1082)
                      +.+   ++.+++.||.+     +.|.++|+.+..  |...
T Consensus       484 ~~~---~~~iyv~GG~~~~~~~~~v~~yd~~~~~--W~~~  518 (534)
T PHA03098        484 CIF---NNKIYVVGGDKYEYYINEIEVYDDKTNT--WTLF  518 (534)
T ss_pred             EEE---CCEEEEEcCCcCCcccceeEEEeCCCCE--EEec
Confidence            222   46788888765     467888887755  6543

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=92.21  E-value=3.8  Score=45.54  Aligned_cols=148  Identities=10%  Similarity=0.116  Sum_probs=77.5

Q ss_pred             cCEEEEEEeCCCCEEEEEe-----------CCC-cEEEEEcCCc--ccccceeeeccCCCCCCCCCCcEEEEcCCCcEEE
Q 001415          871 KRITGLAFSHALNVLVSSG-----------ADS-QLCVWSSDGW--EKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFL  936 (1082)
Q Consensus       871 ~~V~~l~~s~d~~~l~s~s-----------~Dg-~i~vwd~~~~--~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~  936 (1082)
                      .....|+|.++|+++++-.           ..+ .|.+++-..+  ...+...+.  .+.    .....+++.++| +++
T Consensus        14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa--~~l----~~p~Gi~~~~~G-lyV   86 (367)
T TIGR02604        14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFA--EEL----SMVTGLAVAVGG-VYV   86 (367)
T ss_pred             CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEee--cCC----CCccceeEecCC-EEE
Confidence            3456789999998877643           223 6766665432  221112221  111    234789999999 555


Q ss_pred             EEecCeEEEE-EccCc-----c--ee-eeeccCC--CCcceeEEEEcCCCceEEEeecC-------------------Cc
Q 001415          937 VVHETQLAIF-ETTKL-----E--CV-KQWVPRE--SSAPITHATFSCDSQLVYACFLD-------------------AT  986 (1082)
Q Consensus       937 ~~~d~~i~iw-d~~~~-----~--~~-~~~~~~~--h~~~i~~l~~s~dg~~l~t~s~d-------------------g~  986 (1082)
                      +. ...|..| |.+..     +  .+ ..+....  +......++|.|||.+.++-+..                   |.
T Consensus        87 ~~-~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~  165 (367)
T TIGR02604        87 AT-PPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGG  165 (367)
T ss_pred             eC-CCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCce
Confidence            44 3445444 44321     1  11 1222211  23457889999999876654421                   33


Q ss_pred             EEEEecCCceeeeeeCCCeecCCCCCCCCceeeEEEEeCCCCCeEEEEecCC
Q 001415          987 VCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDG 1038 (1082)
Q Consensus       987 v~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~~~~~~~d~~~l~s~~~dg 1038 (1082)
                      |.-++..+++.. .+      ..|+    ..+..++|++ +|+++++-..++
T Consensus       166 i~r~~pdg~~~e-~~------a~G~----rnp~Gl~~d~-~G~l~~tdn~~~  205 (367)
T TIGR02604       166 LFRYNPDGGKLR-VV------AHGF----QNPYGHSVDS-WGDVFFCDNDDP  205 (367)
T ss_pred             EEEEecCCCeEE-EE------ecCc----CCCccceECC-CCCEEEEccCCC
Confidence            444455444432 11      1121    3455799998 588876644333

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>PLN00033 photosystem II stability/assembly factor; Provisional

Probab=92.13  E-value=23  Score=39.48  Aligned_cols=154  Identities=10%  Similarity=0.039  Sum_probs=85.8

Q ss_pred             eeEEEEecCCCcEEEEEeCCCcEEEEecccceeeeeecccccCEEEEEEeCCCCEEEEEeCCCcEEEEEcCCcccccc-e
Q 001415          830 ATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKN-R  908 (1082)
Q Consensus       830 v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~-~  908 (1082)
                      ...+..++ ++.++++|.....++-||-....-...-......++++.|.+++.+++++ .+|.+ +|..+.++.... .
T Consensus       241 f~~v~~~~-dG~~~~vg~~G~~~~s~d~G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g-~~G~l-~~S~d~G~~~~~~~  317 (398)
T PLN00033        241 FSTVNRSP-DGDYVAVSSRGNFYLTWEPGQPYWQPHNRASARRIQNMGWRADGGLWLLT-RGGGL-YVSKGTGLTEEDFD  317 (398)
T ss_pred             eeeEEEcC-CCCEEEEECCccEEEecCCCCcceEEecCCCccceeeeeEcCCCCEEEEe-CCceE-EEecCCCCcccccc
Confidence            34456667 77777766543333334422110011112234568999999999877655 56654 454444321100 1


Q ss_pred             eeeccCCCCCCCCCCcEEEEcCCCcEEEEEecCeEEEEEccCcceeeeec-cCCCCcceeEEEEcCCCceEEEeecCCcE
Q 001415          909 FLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWV-PRESSAPITHATFSCDSQLVYACFLDATV  987 (1082)
Q Consensus       909 ~~~~~~~~~~~~~~v~~~~fspdg~~l~~~~d~~i~iwd~~~~~~~~~~~-~~~h~~~i~~l~~s~dg~~l~t~s~dg~v  987 (1082)
                      +........  ...+..+.|.+++..++++..|.+.... +.|+.-.... ...-......+.|.++++.+++| .+|.|
T Consensus       318 f~~~~~~~~--~~~l~~v~~~~d~~~~a~G~~G~v~~s~-D~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~G-~~G~i  393 (398)
T PLN00033        318 FEEADIKSR--GFGILDVGYRSKKEAWAAGGSGILLRST-DGGKSWKRDKGADNIAANLYSVKFFDDKKGFVLG-NDGVL  393 (398)
T ss_pred             eeecccCCC--CcceEEEEEcCCCcEEEEECCCcEEEeC-CCCcceeEccccCCCCcceeEEEEcCCCceEEEe-CCcEE
Confidence            111111100  1347889999999999888888766653 3444322222 11224567899998887777766 57776


Q ss_pred             EEE
Q 001415          988 CVF  990 (1082)
Q Consensus       988 ~vw  990 (1082)
                      .-|
T Consensus       394 l~~  396 (398)
T PLN00033        394 LRY  396 (398)
T ss_pred             EEe
Confidence            654

>PF04494 TFIID_90kDa: WD40 associated region in TFIID subunit; InterPro: IPR007582 This region, possibly a domain is found in subunits of transcription factor TFIID

Probab=91.66  E-value=0.44  Score=44.24  Aligned_cols=61  Identities=21%  Similarity=0.322  Sum_probs=45.3

Q ss_pred             ccchhhHHHHHHHHHHHHHhcCCHHHHHHHHHhccccccccCHHHHHHHHHHhccccccchh
Q 001415           67 RYSMKIFFEIRKQKYLEALDKHDRAKAVEILVKDLKVFSTFNEELFKEITQLLTLENFRENE  128 (1082)
Q Consensus        67 ~~~~~~~~~l~~~~~lell~~~~~~~a~~~l~~~l~~~~~~~~~~~~~l~~ll~~~~~~~~~  128 (1082)
                      ++.. ++|.++-+.||+|+..+..++|..|+.+...-+.....+.+++|..+....+...++
T Consensus        36 EL~~-lLyPvFvh~YL~Lv~~~~~~~A~~F~~kf~~~~~~~~~~~i~~L~~i~~~~~l~~~~   96 (142)
T PF04494_consen   36 ELSR-LLYPVFVHSYLDLVSKGHPEEAKSFLEKFSPDFEDSHQEDIEKLSSITSPEHLEENE   96 (142)
T ss_dssp             HHGG-GHHHHHHHHHHHHHHTT-HHHHHHHHHHHGGGGHGHGHHHHHHHTT--SHHHHHHSH
T ss_pred             HHHH-HHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHhHHHHHHHHHHHhhCcHHHHhccH
Confidence            4554 999999999999999999999999999877666665667777777655555554333

The function of this region is unknown.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 2J4B_D 2J49_A 2NXP_F.

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=91.46  E-value=5.2  Score=43.87  Aligned_cols=150  Identities=15%  Similarity=0.119  Sum_probs=87.5

Q ss_pred             CCCCceEEEEEeCCCcEEEEEccCCceeEEeecCCcCeEEEeeeecC------CceEEEEecCCCcEEEEecCCCCceee
Q 001415          475 HPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKE------NIQFIFSTALDGKIKAWLYDNLGSRVD  548 (1082)
Q Consensus       475 ~dg~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~------~~~~l~s~~~dg~i~iwd~~~~~~~~~  548 (1082)
                      .+...+++..|+....++--|++.|+.+..+..|..-|  +.+.|..      +.+.|+ |-.+..|.-.|.+.......
T Consensus       476 ~~dssli~~dg~~~~kLykmDIErGkvveeW~~~ddvv--Vqy~p~~kf~qmt~eqtlv-GlS~~svFrIDPR~~gNKi~  552 (776)
T COG5167         476 DNDSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDVV--VQYNPYFKFQQMTDEQTLV-GLSDYSVFRIDPRARGNKIK  552 (776)
T ss_pred             cCCcceEEecCCCcccceeeecccceeeeEeecCCcce--eecCCchhHHhcCccceEE-eecccceEEecccccCCcee
Confidence            33444466677777888889999999999998776653  3444432      122343 44455555455543332221


Q ss_pred             ecCCCCceEEEEEccCCCeeeecccccceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEEecCCCCCCcCeEEEcC
Q 001415          549 YEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNK  628 (1082)
Q Consensus       549 ~~~~~~~v~~~~~s~d~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~  628 (1082)
                      .......++.-.|+.                 .......++++++..|.|++||--.......+.+-+.  .|..+..+.
T Consensus       553 v~esKdY~tKn~Fss-----------------~~tTesGyIa~as~kGDirLyDRig~rAKtalP~lG~--aIk~idvta  613 (776)
T COG5167         553 VVESKDYKTKNKFSS-----------------GMTTESGYIAAASRKGDIRLYDRIGKRAKTALPGLGD--AIKHIDVTA  613 (776)
T ss_pred             eeeehhccccccccc-----------------cccccCceEEEecCCCceeeehhhcchhhhcCccccc--ceeeeEeec
Confidence            111111111111111                 1112334899999999999999654444444444444  688899999


Q ss_pred             CCCEEEEEECCCcEEEEEe
Q 001415          629 DGCLLAVSTNDNGIKILAT  647 (1082)
Q Consensus       629 dg~~l~~~~~dg~i~iwd~  647 (1082)
                      +|+++++.+. ..+.+-|+
T Consensus       614 ~Gk~ilaTCk-~yllL~d~  631 (776)
T COG5167         614 NGKHILATCK-NYLLLTDV  631 (776)
T ss_pred             CCcEEEEeec-ceEEEEec
Confidence            9999888775 44555554

>PLN00033 photosystem II stability/assembly factor; Provisional

Probab=91.33  E-value=28  Score=38.83  Aligned_cols=151  Identities=9%  Similarity=-0.024  Sum_probs=82.2

Q ss_pred             EEEEEEeCCCCEEEEEeCCCcEEEEEcCCcccccceeeeccCCCCCCCCCCcEEEEcCCCcEEEEEecCeEEEEEccCcc
Q 001415          873 ITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLE  952 (1082)
Q Consensus       873 V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~~d~~i~iwd~~~~~  952 (1082)
                      ...+..++||.+++.+..-..++-||--...   ........     ...+..+.|.+++..++++..|.+.. ....++
T Consensus       241 f~~v~~~~dG~~~~vg~~G~~~~s~d~G~~~---W~~~~~~~-----~~~l~~v~~~~dg~l~l~g~~G~l~~-S~d~G~  311 (398)
T PLN00033        241 FSTVNRSPDGDYVAVSSRGNFYLTWEPGQPY---WQPHNRAS-----ARRIQNMGWRADGGLWLLTRGGGLYV-SKGTGL  311 (398)
T ss_pred             eeeEEEcCCCCEEEEECCccEEEecCCCCcc---eEEecCCC-----ccceeeeeEcCCCCEEEEeCCceEEE-ecCCCC
Confidence            4455667888777766543323334332200   01111111     14578999999999998887777543 333443


Q ss_pred             e-----eeeeccCCCCcceeEEEEcCCCceEEEeecCCcEEEEecCCceeeeeeCCCeecCCCCCCCCceeeEEEEeCCC
Q 001415          953 C-----VKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQE 1027 (1082)
Q Consensus       953 ~-----~~~~~~~~h~~~i~~l~~s~dg~~l~t~s~dg~v~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~~~~~~~d 1027 (1082)
                      .     ........-...+.++.|.+|+..+++| ..|.+... .+.|+.-.........     ....+  .+.|.+  
T Consensus       312 ~~~~~~f~~~~~~~~~~~l~~v~~~~d~~~~a~G-~~G~v~~s-~D~G~tW~~~~~~~~~-----~~~ly--~v~f~~--  380 (398)
T PLN00033        312 TEEDFDFEEADIKSRGFGILDVGYRSKKEAWAAG-GSGILLRS-TDGGKSWKRDKGADNI-----AANLY--SVKFFD--  380 (398)
T ss_pred             cccccceeecccCCCCcceEEEEEcCCCcEEEEE-CCCcEEEe-CCCCcceeEccccCCC-----Cccee--EEEEcC--
Confidence            1     1222111112458999999988877655 57776655 4556554443311111     11134  788776  


Q ss_pred             CCeEEEEecCCcEEEE
Q 001415         1028 PNEFALGLSDGGVHVF 1043 (1082)
Q Consensus      1028 ~~~l~s~~~dg~v~vW 1043 (1082)
                      .+.....+.+|.|.-|
T Consensus       381 ~~~g~~~G~~G~il~~  396 (398)
T PLN00033        381 DKKGFVLGNDGVLLRY  396 (398)
T ss_pred             CCceEEEeCCcEEEEe
Confidence            2445555678887655

>PF13449 Phytase-like: Esterase-like activity of phytase

Probab=91.23  E-value=26  Score=38.21  Aligned_cols=162  Identities=12%  Similarity=0.147  Sum_probs=89.5

Q ss_pred             CCCCccEEEeec-CCCeEEEeeCCe------EEEEecCC--C--eeE-----EEECCCCC--------CeeEEEEecCCC
Q 001415          785 PEEAVPCFALSK-NDSYVMSASGGK------ISLFNMMT--F--KTM-----ATFMPPPP--------AATFLAFHPQDN  840 (1082)
Q Consensus       785 ~~~~i~~l~~s~-dg~~l~~~sdg~------i~iwd~~~--~--~~~-----~~~~~~~~--------~v~~l~~sp~~~  840 (1082)
                      .-+.+..+.+.+ ++.+++...+|.      +..+++..  +  ..+     ..+....+        ..-++++.+ ++
T Consensus        18 ~~GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~-~g   96 (326)
T PF13449_consen   18 PFGGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPP-DG   96 (326)
T ss_pred             ccCcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEec-CC
Confidence            345678889985 555555554455      55555443  1  111     11222222        344788866 78


Q ss_pred             cEEEEEeCC------CcEEEEecccceeeeeec---------------ccccCEEEEEEeCCCCEEEEEeC-----CC--
Q 001415          841 NIIAIGMDD------SSIQIYNVRVDEVKSKLK---------------GHSKRITGLAFSHALNVLVSSGA-----DS--  892 (1082)
Q Consensus       841 ~~lasg~~d------g~v~iwd~~~~~~~~~l~---------------~h~~~V~~l~~s~d~~~l~s~s~-----Dg--  892 (1082)
                      .++++.-.+      ..|+.++.. |+.+..+.               ......-+|+++|||+.|+++.+     |+  
T Consensus        97 ~~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~~  175 (326)
T PF13449_consen   97 SFWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGPR  175 (326)
T ss_pred             CEEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCcc
Confidence            788776666      678888866 65544431               12346789999999997666533     22  


Q ss_pred             c-------EEEEEcCCcc---cccceeeeccCC-CCCCCCCCcEEEEcCCCcEEEE--E----ecCeEEEEEc
Q 001415          893 Q-------LCVWSSDGWE---KQKNRFLQIPTG-RTPTAQSDTRVQFHQDQIHFLV--V----HETQLAIFET  948 (1082)
Q Consensus       893 ~-------i~vwd~~~~~---~~~~~~~~~~~~-~~~~~~~v~~~~fspdg~~l~~--~----~d~~i~iwd~  948 (1082)
                      .       ++++..+...   ............ .......++.+.+-+++++|+.  .    ....++||.+
T Consensus       176 ~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvLER~~~~~~~~~~ri~~v  248 (326)
T PF13449_consen  176 ANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVLERDFSPGTGNYKRIYRV  248 (326)
T ss_pred             cccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEEEccCCCCccceEEEEEE
Confidence            1       5565554322   111112222210 0002257899999999998887  2    2335555544

>COG4257 Vgb Streptogramin lyase [Defense mechanisms]

Probab=90.90  E-value=20  Score=36.41  Aligned_cols=234  Identities=10%  Similarity=0.050  Sum_probs=143.1

Q ss_pred             cceeEEEEccCCceeeecccCCeEEEeeccccccCCCCCcccccCccccCCCCcceeecccCCCCCCCCccEEEeecCCC
Q 001415          720 TKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDS  799 (1082)
Q Consensus       720 ~~i~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~  799 (1082)
                      .....++-.+||...+++...+.+-                      -.|+.+|+.....+.   .......+..-|||.
T Consensus        62 ~ap~dvapapdG~VWft~qg~gaiG----------------------hLdP~tGev~~ypLg---~Ga~Phgiv~gpdg~  116 (353)
T COG4257          62 SAPFDVAPAPDGAVWFTAQGTGAIG----------------------HLDPATGEVETYPLG---SGASPHGIVVGPDGS  116 (353)
T ss_pred             CCccccccCCCCceEEecCccccce----------------------ecCCCCCceEEEecC---CCCCCceEEECCCCC
Confidence            3445567777777666655554432                      238888887776664   455567788888887


Q ss_pred             eEEEeeCCeEEEEecCCCeeEEE---ECCCCCCeeEEEEecCCCcEEEEEeCC---------CcEEEEecccceeeeeec
Q 001415          800 YVMSASGGKISLFNMMTFKTMAT---FMPPPPAATFLAFHPQDNNIIAIGMDD---------SSIQIYNVRVDEVKSKLK  867 (1082)
Q Consensus       800 ~l~~~sdg~i~iwd~~~~~~~~~---~~~~~~~v~~l~~sp~~~~~lasg~~d---------g~v~iwd~~~~~~~~~l~  867 (1082)
                      .-++-+...|.-.|-++.+..+-   ............|.+ .|++-+++...         +.|++|+...        
T Consensus       117 ~Witd~~~aI~R~dpkt~evt~f~lp~~~a~~nlet~vfD~-~G~lWFt~q~G~yGrLdPa~~~i~vfpaPq--------  187 (353)
T COG4257         117 AWITDTGLAIGRLDPKTLEVTRFPLPLEHADANLETAVFDP-WGNLWFTGQIGAYGRLDPARNVISVFPAPQ--------  187 (353)
T ss_pred             eeEecCcceeEEecCcccceEEeecccccCCCcccceeeCC-CccEEEeeccccceecCcccCceeeeccCC--------
Confidence            66554433566666655443321   122344577888999 88888887631         2344444332        


Q ss_pred             ccccCEEEEEEeCCCCEEEEEeCCCcEEEEEcCCcccccceeeeccCCCCCCCCCCcEEEEcCCCcEEEE-EecCeEEEE
Q 001415          868 GHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIF  946 (1082)
Q Consensus       868 ~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~-~~d~~i~iw  946 (1082)
                        ...-+.|+..|||..-++.-.+..|-.-|..++.   .+.+..+....   .....+--+|.|+.-++ ...+.+..|
T Consensus       188 --G~gpyGi~atpdGsvwyaslagnaiaridp~~~~---aev~p~P~~~~---~gsRriwsdpig~~wittwg~g~l~rf  259 (353)
T COG4257         188 --GGGPYGICATPDGSVWYASLAGNAIARIDPFAGH---AEVVPQPNALK---AGSRRIWSDPIGRAWITTWGTGSLHRF  259 (353)
T ss_pred             --CCCCcceEECCCCcEEEEeccccceEEcccccCC---cceecCCCccc---ccccccccCccCcEEEeccCCceeeEe
Confidence              2335678889999988877777777777776652   23344443322   23455666777887777 466788888


Q ss_pred             EccCcceeeeeccCCCCcceeEEEEcCCCceEEEeecCCcEEEEecCCce
Q 001415          947 ETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLK  996 (1082)
Q Consensus       947 d~~~~~~~~~~~~~~h~~~i~~l~~s~dg~~l~t~s~dg~v~vwd~~~~~  996 (1082)
                      |..+.. -..+...+....-.++.....|+.-.+--..|.|.-+|-.+..
T Consensus       260 dPs~~s-W~eypLPgs~arpys~rVD~~grVW~sea~agai~rfdpeta~  308 (353)
T COG4257         260 DPSVTS-WIEYPLPGSKARPYSMRVDRHGRVWLSEADAGAIGRFDPETAR  308 (353)
T ss_pred             Cccccc-ceeeeCCCCCCCcceeeeccCCcEEeeccccCceeecCcccce
Confidence            876655 4455555555566667766666655544445555555555443

>PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others

Probab=90.82  E-value=29  Score=44.62  Aligned_cols=149  Identities=14%  Similarity=0.197  Sum_probs=88.3

Q ss_pred             CCCCceEEEEecCCCeEEEEEcCCCcEEEEEccccceeeeeceeeeccCCCCcccccccccCCCCceeEEEEecCCCeEE
Q 001415          357 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFG  436 (1082)
Q Consensus       357 h~~~v~~~~~spdg~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la  436 (1082)
                      |-..++.|.-+++|.++=+   .|+.++.||..+..         |...          -..-...++.++-.-||+..|
T Consensus       361 H~A~LTgv~~~~~ge~lRl---Hd~~LY~~d~~~~~---------Wk~~----------~~~~d~~~S~Ls~qgdG~lYA  418 (1774)
T PF11725_consen  361 HIAHLTGVHTDPDGEQLRL---HDDRLYQFDPNTAR---------WKPP----------PDKSDTPFSSLSRQGDGKLYA  418 (1774)
T ss_pred             HHHHhhccccCCCCCeEEe---ecCceeeeccccce---------ecCC----------CCcccchhhhhcccCCCceEe
Confidence            6677788888888885322   58888888877553         3310          112233566666666777766


Q ss_pred             EEeCCCeEEEEEccCCceeeEEEEeeccccCeeEEEecCCCCceEEEEEeCCCcEEEEEccCC------ce--eEEeecC
Q 001415          437 VAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNG------AK--QYIFEGH  508 (1082)
Q Consensus       437 s~~~d~~v~iwd~~~~~~~~~~~~~~~h~~~V~~l~fs~dg~~~~l~s~s~d~~i~vwd~~~~------~~--~~~~~~h  508 (1082)
                         .++. .|-|+..+....      ..-..|.+...+++|.- .+.++-...++.+|++...      ++  .-.+.+-
T Consensus       419 ---k~~~-~l~nLSs~~~~~------~~v~~l~sfSv~~~g~v-A~L~~~d~q~~qL~~m~~~~a~~~p~~~~~L~L~dG  487 (1774)
T PF11725_consen  419 ---KDDD-TLVNLSSGQMSE------AEVDKLKSFSVAPDGTV-AMLTGKDGQTLQLHDMSPVDAPPTPRKTKTLQLADG  487 (1774)
T ss_pred             ---cCCC-ceeecCCCCcch------hhhhhcccccccCCCce-eeeecCCCcceeeeccCccccccCccceeeeeccCC
Confidence               2221 133555443211      12245777788899983 4667777777899998753      11  1122333


Q ss_pred             CcCeEEEeeeecCCceEEEEecCCCcEEEEecCC
Q 001415          509 EAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDN  542 (1082)
Q Consensus       509 ~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~  542 (1082)
                      .....++.++  ++  .|+++..+|.++.=++..
T Consensus       488 ~a~A~~VgLs--~d--rLFvADseGkLYsa~l~~  517 (1774)
T PF11725_consen  488 KAQAQSVGLS--ND--RLFVADSEGKLYSADLPA  517 (1774)
T ss_pred             chhhhheeec--CC--eEEEEeCCCCEEeccccc
Confidence            3345556653  32  588888888888776654

It is an essential pathogenicity factor of approximately 198 kDa. Its injection into the host-plant is dependent upon the bacterial type III or Hrp secretion system []. The family is long and carries a number of predicted functional regions, including an ERMS or endoplasmic reticulum membrane retention signal at both the C- and the N-termini, a leucine-zipper motif from residues 539-560, and a nuclear localisation signal at 1358-1361. This conserved AvrE-family of effectors is among the few that are required for full virulence of many phytopathogenic pseudomonads, erwinias and pantoeas [].

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=90.67  E-value=0.68  Score=31.96  Aligned_cols=32  Identities=19%  Similarity=0.266  Sum_probs=26.2

Q ss_pred             CCceEEEEecCCC--eEEEEEcCCCcEEEEEccc
Q 001415          359 SSPMSMDFHPVQQ--TLLLVGTNVGDIGLWEVGS  390 (1082)
Q Consensus       359 ~~v~~~~~spdg~--~llasgs~dg~i~iwd~~~  390 (1082)
                      +.|.+++|||+.-  -||+..-.-|.|.|+|+.+
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~   34 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS   34 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence            4689999997543  4788888889999999985

It contains a characteristic DLL sequence motif.

>KOG1896 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT1 (CPSF subunit) [RNA processing and modification]

Probab=90.61  E-value=53  Score=40.79  Aligned_cols=112  Identities=8%  Similarity=0.039  Sum_probs=58.5

Q ss_pred             ecCCCeEEEEeCCCeEEEEEccCCceeeEEEEeec-cccCeeEEEecCCCCceEEEEEe-C-CCcEEEEEccC-Ccee--
Q 001415          429 SPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDA-HVGGVNDIAFSHPNKQLCVITCG-D-DKTIKVWDATN-GAKQ--  502 (1082)
Q Consensus       429 spdg~~las~~~d~~v~iwd~~~~~~~~~~~~~~~-h~~~V~~l~fs~dg~~~~l~s~s-~-d~~i~vwd~~~-~~~~--  502 (1082)
                      +-.+.++++-+..|.|.+++++.....-   .+.. +...+.++...+|-+. .+.+-+ . ++.=-.|-... +.-+  
T Consensus       633 sv~dpyv~v~~~~g~i~~~~l~~~s~rl---~~~~~~s~~~~sv~~~~dlsg-~f~~~s~l~~k~~~~~gr~~~~~~~~~  708 (1366)
T KOG1896|consen  633 SVADPYVAVRSSEGRITLYDLEEKSHRL---ALHDPMSFKVVSVSLPADLSG-MFTTLSDLSLKGNEANGRSSEAEGLQS  708 (1366)
T ss_pred             eccCceEEEEEcCCceEEEEeccccchh---hccCcccceeEEEechhhhcc-ceEEEeeecccCccccccccccccccc
Confidence            3467799999999999999998752111   1222 4566777777776554 233333 0 01111111110 0000  


Q ss_pred             --EEeecCCcCeEEEeeeecCCceEEEEecCCCcEEEEecCCCCceeeec
Q 001415          503 --YIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYE  550 (1082)
Q Consensus       503 --~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~  550 (1082)
                        ....+..+.      .+..+..+++.+..+|++.++++..........
T Consensus       709 ~~~kv~~~egg------~~~~~~~~~~~~~e~g~leiy~~pd~~lVf~v~  752 (1366)
T KOG1896|consen  709 LPCKVDDEEGG------SPEQEPYWCVFVTESGTLEIYALPDFDLVFEVD  752 (1366)
T ss_pred             CCccccCCCCC------CcccCceEEEEEcCCCceEEEccCCcceEEEee
Confidence              111111110      111111577788889999999888766655444

>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=90.04  E-value=4.6  Score=48.87  Aligned_cols=99  Identities=14%  Similarity=0.130  Sum_probs=64.4

Q ss_pred             CccEEEeecCCC--eEEEeeCCeEEEEecCCCeeEEEECCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEecccceeeee
Q 001415          788 AVPCFALSKNDS--YVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSK  865 (1082)
Q Consensus       788 ~i~~l~~s~dg~--~l~~~sdg~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~  865 (1082)
                      ...++.|.|.-.  .++.-.|+.|++..+........--.....+++++|+| .|+.+++|...|++.-|... ++....
T Consensus       157 f~~~~~wnP~vp~n~av~l~dlsl~V~~~~~~~~~v~s~p~t~~~Tav~WSp-rGKQl~iG~nnGt~vQy~P~-leik~~  234 (1405)
T KOG3630|consen  157 FQLKNVWNPLVPLNSAVDLSDLSLRVKSTKQLAQNVTSFPVTNSQTAVLWSP-RGKQLFIGRNNGTEVQYEPS-LEIKSE  234 (1405)
T ss_pred             ccccccccCCccchhhhhccccchhhhhhhhhhhhhcccCcccceeeEEecc-ccceeeEecCCCeEEEeecc-cceeec
Confidence            345566665433  33334578888877653322222122455689999999 89999999999999988754 333333


Q ss_pred             ecc----cccCEEEEEEeCCCCEEEEE
Q 001415          866 LKG----HSKRITGLAFSHALNVLVSS  888 (1082)
Q Consensus       866 l~~----h~~~V~~l~~s~d~~~l~s~  888 (1082)
                      +.+    ...+|.+|+|-....+|++-
T Consensus       235 ip~Pp~~e~yrvl~v~Wl~t~eflvvy  261 (1405)
T KOG3630|consen  235 IPEPPVEENYRVLSVTWLSTQEFLVVY  261 (1405)
T ss_pred             ccCCCcCCCcceeEEEEecceeEEEEe
Confidence            321    14689999998877777764

>PF13449 Phytase-like: Esterase-like activity of phytase

Probab=90.03  E-value=11  Score=40.92  Aligned_cols=164  Identities=12%  Similarity=0.097  Sum_probs=90.4

Q ss_pred             CCeeEEEEecCCCcEEEEEeCCCc------EEEEeccc--c--eee-----eeeccccc--------CEEEEEEeCCCCE
Q 001415          828 PAATFLAFHPQDNNIIAIGMDDSS------IQIYNVRV--D--EVK-----SKLKGHSK--------RITGLAFSHALNV  884 (1082)
Q Consensus       828 ~~v~~l~~sp~~~~~lasg~~dg~------v~iwd~~~--~--~~~-----~~l~~h~~--------~V~~l~~s~d~~~  884 (1082)
                      +....+.+.++++.+++ -+++|.      ++.+++..  +  ..+     ..+..-.+        ..-+|++.++|.+
T Consensus        20 GGlSgl~~~~~~~~~~a-vSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~~   98 (326)
T PF13449_consen   20 GGLSGLDYDPDDGRFYA-VSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGSF   98 (326)
T ss_pred             CcEeeEEEeCCCCEEEE-EECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCCE
Confidence            45677888863554444 556666      65555543  1  000     11111111        3347888888988


Q ss_pred             EEEEeCC------CcEEEEEcCCcccccceeeeccC-------CCCCCCCCCcEEEEcCCCcEEEEEe------cC--e-
Q 001415          885 LVSSGAD------SQLCVWSSDGWEKQKNRFLQIPT-------GRTPTAQSDTRVQFHQDQIHFLVVH------ET--Q-  942 (1082)
Q Consensus       885 l~s~s~D------g~i~vwd~~~~~~~~~~~~~~~~-------~~~~~~~~v~~~~fspdg~~l~~~~------d~--~-  942 (1082)
                      +++.-.+      ..|..++.+ +.......+....       ...........++++|||+.|.+..      |+  . 
T Consensus        99 ~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~~~~  177 (326)
T PF13449_consen   99 WISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGPRAN  177 (326)
T ss_pred             EEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCcccc
Confidence            8887667      778788766 3332211111110       1122336778999999999555521      22  1 


Q ss_pred             ------EEEE--EccC-cceeeeec--cCC-----CCcceeEEEEcCCCceEEEee-----cCCcEEEEecC
Q 001415          943 ------LAIF--ETTK-LECVKQWV--PRE-----SSAPITHATFSCDSQLVYACF-----LDATVCVFSAA  993 (1082)
Q Consensus       943 ------i~iw--d~~~-~~~~~~~~--~~~-----h~~~i~~l~~s~dg~~l~t~s-----~dg~v~vwd~~  993 (1082)
                            ++++  |..+ +.....+.  ...     ....|+.+.+-+|+++|+.-=     ....++|+.+.
T Consensus       178 ~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvLER~~~~~~~~~~ri~~v~  249 (326)
T PF13449_consen  178 PDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVLERDFSPGTGNYKRIYRVD  249 (326)
T ss_pred             cccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEEEccCCCCccceEEEEEEE
Confidence                  4454  4444 32333332  211     356789999999999877532     23456666544

>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]

Probab=89.92  E-value=0.72  Score=53.69  Aligned_cols=162  Identities=14%  Similarity=0.158  Sum_probs=92.4

Q ss_pred             CCCCceEEEEe----cCCCeEEEEEcCCCcEEEEEcc--ccceeeeeceeeeccCCCCcccccccccCCCCceeEEEEec
Q 001415          357 QGSSPMSMDFH----PVQQTLLLVGTNVGDIGLWEVG--SRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP  430 (1082)
Q Consensus       357 h~~~v~~~~~s----pdg~~llasgs~dg~i~iwd~~--~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~sp  430 (1082)
                      -.+.|--++|-    |.+.      -.-|...|||++  .|+......++              +...-...+.-+.|.|
T Consensus       131 f~G~v~dl~fah~~~pk~~------~~vg~lfVy~vd~l~G~iq~~l~v~--------------~~~p~gs~~~~V~wcp  190 (1283)
T KOG1916|consen  131 FPGGVGDLQFAHTKCPKGR------RLVGELFVYDVDVLQGEIQPQLEVT--------------PITPYGSDPQLVSWCP  190 (1283)
T ss_pred             CCCCcccccccccCChHHH------HHhhhhheeehHhhccccccceEEe--------------ecCcCCCCcceeeecc
Confidence            45666666663    3333      223678899885  34433322222              1222333445555555


Q ss_pred             ---CCCeEEEEeCCCeEEEEEccCCceeeEEEEeeccccCeeEEEe-----------cCCCCceEEEEEeCCCcEEEEEc
Q 001415          431 ---DGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAF-----------SHPNKQLCVITCGDDKTIKVWDA  496 (1082)
Q Consensus       431 ---dg~~las~~~d~~v~iwd~~~~~~~~~~~~~~~h~~~V~~l~f-----------s~dg~~~~l~s~s~d~~i~vwd~  496 (1082)
                         +.-++..+-.++.|++.++.+...-    -+.+|...+..++|           ||||+  .++.++.||.++.|-+
T Consensus       191 ~~~~~~~ic~~~~~~~i~lL~~~ra~~~----l~rsHs~~~~d~a~~~~g~~~l~~lSpDGt--v~a~a~~dG~v~f~Qi  264 (1283)
T KOG1916|consen  191 IAVNKVYICYGLKGGEIRLLNINRALRS----LFRSHSQRVTDMAFFAEGVLKLASLSPDGT--VFAWAISDGSVGFYQI  264 (1283)
T ss_pred             cccccceeeeccCCCceeEeeechHHHH----HHHhcCCCcccHHHHhhchhhheeeCCCCc--EEEEeecCCccceeee
Confidence               6678888888899998777665431    25568877776665           78888  7888888998888865


Q ss_pred             c-----CCceeEEeecCCcCeEEEeeeecCC---------ceEEEEecC-CCcEEEEecCCCCc
Q 001415          497 T-----NGAKQYIFEGHEAPVYSVCPHHKEN---------IQFIFSTAL-DGKIKAWLYDNLGS  545 (1082)
Q Consensus       497 ~-----~~~~~~~~~~h~~~v~~~~~~~~~~---------~~~l~s~~~-dg~i~iwd~~~~~~  545 (1082)
                      .     ..+|++..+.|.+.-. +||+....         -.++++++. ...+++|....-.+
T Consensus       265 yi~g~~~~rclhewkphd~~p~-vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~C  327 (1283)
T KOG1916|consen  265 YITGKIVHRCLHEWKPHDKHPR-VCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQC  327 (1283)
T ss_pred             eeeccccHhhhhccCCCCCCCc-eeeeeccccccCCccceeEEEEecccCCcceeEeeccchhh
Confidence            3     2345555666663211 12222111         124444444 45688886554333

>PHA02790 Kelch-like protein; Provisional

Probab=89.69  E-value=18  Score=42.01  Aligned_cols=185  Identities=8%  Similarity=0.015  Sum_probs=92.5

Q ss_pred             CCcEEEEEeCCC-----cEEEEeccccee--eeeecccccCEEEEEEeCCCCEEEEEeCC--CcEEEEEcCCccccccee
Q 001415          839 DNNIIAIGMDDS-----SIQIYNVRVDEV--KSKLKGHSKRITGLAFSHALNVLVSSGAD--SQLCVWSSDGWEKQKNRF  909 (1082)
Q Consensus       839 ~~~~lasg~~dg-----~v~iwd~~~~~~--~~~l~~h~~~V~~l~~s~d~~~l~s~s~D--g~i~vwd~~~~~~~~~~~  909 (1082)
                      ++.++++|+.++     .+..||..+++-  +..+........ ++ .-++...+.||.+  .++..||..+++......
T Consensus       271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~-~v-~~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~  348 (480)
T PHA02790        271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYAS-GV-PANNKLYVVGGLPNPTSVERWFHGDAAWVNMPS  348 (480)
T ss_pred             CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcce-EE-EECCEEEEECCcCCCCceEEEECCCCeEEECCC
Confidence            566777777543     466788776542  222221111122 22 2467777888764  357788876543221111


Q ss_pred             eeccCCCCCCCCCCcEEEEcCCCcEEEE-Eec---CeEEEEEccCcceeeeeccCCCCcceeEEEEcCCCceEEEeecCC
Q 001415          910 LQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHE---TQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDA  985 (1082)
Q Consensus       910 ~~~~~~~~~~~~~v~~~~fspdg~~l~~-~~d---~~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~dg~~l~t~s~dg  985 (1082)
                      +...        .....+..-+|+..+. +.+   ..+..||..+.+....-........  ..+..-+|+..+.|   |
T Consensus       349 l~~~--------r~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~--~~~~~~~~~IYv~G---G  415 (480)
T PHA02790        349 LLKP--------RCNPAVASINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYK--SCALVFGRRLFLVG---R  415 (480)
T ss_pred             CCCC--------CcccEEEEECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCcccc--ceEEEECCEEEEEC---C
Confidence            1110        1111222346666666 322   3577888876654432221111111  11223467766666   4


Q ss_pred             cEEEEecCCceeeeeeCCCeecCCCCCCCCceeeEEEEeCCCCCeEEEEecC-----CcEEEEccCCCC
Q 001415          986 TVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSD-----GGVHVFEPLESE 1049 (1082)
Q Consensus       986 ~v~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~~~~~~~d~~~l~s~~~d-----g~v~vW~~~~~~ 1049 (1082)
                      .+.+||..+.+-.. +.+. ..+..  ..     .++..  ++.+.+.||.+     ..+..+|+.+++
T Consensus       416 ~~e~ydp~~~~W~~-~~~m-~~~r~--~~-----~~~v~--~~~IYviGG~~~~~~~~~ve~Yd~~~~~  473 (480)
T PHA02790        416 NAEFYCESSNTWTL-IDDP-IYPRD--NP-----ELIIV--DNKLLLIGGFYRGSYIDTIEVYNNRTYS  473 (480)
T ss_pred             ceEEecCCCCcEeE-cCCC-CCCcc--cc-----EEEEE--CCEEEEECCcCCCcccceEEEEECCCCe
Confidence            57789887664432 2211 11111  11     22222  47888888865     357788888765

>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]

Probab=89.66  E-value=3.2  Score=44.61  Aligned_cols=171  Identities=11%  Similarity=0.063  Sum_probs=89.5

Q ss_pred             eeEEEECCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEecccceee-eee-ccccc----CEE-EEEEeCCCCEEEEEeC
Q 001415          818 KTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVK-SKL-KGHSK----RIT-GLAFSHALNVLVSSGA  890 (1082)
Q Consensus       818 ~~~~~~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~-~~l-~~h~~----~V~-~l~~s~d~~~l~s~s~  890 (1082)
                      +.+..+......+..+-..| |++.+.+-+. .++.++++.+.... +++ ....+    .|+ ++..-..|.-|..++.
T Consensus       211 e~i~~L~~~~~~v~qllL~P-dg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~  288 (733)
T COG4590         211 EIIRLLSVPFSDVSQLLLTP-DGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHE  288 (733)
T ss_pred             hhhhhcCCCccchHhhEECC-CCCEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCceeEEEEcC
Confidence            33444555667788899999 8888876654 67888888754321 111 11111    121 1122234666888889


Q ss_pred             CCcEEEE-EcCCcccccceeeeccCCCCCCCCCCcEEEEcCCCcEEEE-EecCeEEEEEccCcceeeeeccCCCCcceeE
Q 001415          891 DSQLCVW-SSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFETTKLECVKQWVPRESSAPITH  968 (1082)
Q Consensus       891 Dg~i~vw-d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~h~~~i~~  968 (1082)
                      ||-|.-| |+..+........+...   .....+..+.--...+-++. ...|++.++.....+.+..-.   --..+.-
T Consensus       289 dG~vsQWFdvr~~~~p~l~h~R~f~---l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL~~~---~~~~~~~  362 (733)
T COG4590         289 DGLVSQWFDVRRDGQPHLNHIRNFK---LAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLLFER---AYQAPQL  362 (733)
T ss_pred             CCceeeeeeeecCCCCcceeeeccc---cCcccceeeccccccceEEEEcCCCceeeeecccCcceehhh---hhcCcce
Confidence            9988877 44432211111111111   00011111111111222222 345666665543333221111   1235677


Q ss_pred             EEEcCCCceEEEeecCCcEEEEecCCcee
Q 001415          969 ATFSCDSQLVYACFLDATVCVFSAANLKL  997 (1082)
Q Consensus       969 l~~s~dg~~l~t~s~dg~v~vwd~~~~~~  997 (1082)
                      +++||.+.+|++- +.|.++++.+++...
T Consensus       363 ~~~Sp~~~~Ll~e-~~gki~~~~l~Nr~P  390 (733)
T COG4590         363 VAMSPNQAYLLSE-DQGKIRLAQLENRNP  390 (733)
T ss_pred             eeeCcccchheee-cCCceEEEEecCCCC
Confidence            8999999999865 468899998877554

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=89.36  E-value=1.6  Score=30.20  Aligned_cols=32  Identities=25%  Similarity=0.304  Sum_probs=26.8

Q ss_pred             CceeEEEEecC-C--CeEEEEeCCCeEEEEEccCC
Q 001415          421 VSVNRVIWSPD-G--SLFGVAYSRHIVQIYSYHGG  452 (1082)
Q Consensus       421 ~~V~~l~~spd-g--~~las~~~d~~v~iwd~~~~  452 (1082)
                      +.|.++.|||+ +  .+||.+-..+.|.|+|+.++
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~   35 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN   35 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence            47899999984 4  58998888899999999853

It contains a characteristic DLL sequence motif.

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=89.19  E-value=8.7  Score=45.36  Aligned_cols=132  Identities=6%  Similarity=0.049  Sum_probs=74.4

Q ss_pred             eEEEeeeecCCceEEEEecCCCcEEEEecCCCCceeeec-CC-CCceEEEEEccCCCeeeecccccceeEEEec--CCCC
Q 001415          512 VYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYE-AP-GRWCTTMAYSADGTRTYQGFRKRSLGVVQFD--TTKN  587 (1082)
Q Consensus       512 v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~-~~~v~~~~~s~d~~~~~~~~~~~~i~~~~~~--~~~~  587 (1082)
                      |+.+.+..-.+...|+.|..||.|.+|..+.--...... .. ......+...|+    +.-......+.++++  ...+
T Consensus       103 IN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~----f~~~v~~SaWGLdIh~~~~~r  178 (717)
T PF08728_consen  103 INFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPF----FHLRVGASAWGLDIHDYKKSR  178 (717)
T ss_pred             eeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCC----eEeecCCceeEEEEEecCcce
Confidence            344433333455789999999999999764311110000 00 000000122222    222233366777777  6667


Q ss_pred             EEEEEeCCCeEEEEECCCc-ceEEEEecCCCCCCcCeEEEcCCC---C---EEEEEECCCcEEEEEe
Q 001415          588 RFLAAGDDFSIKFWDMDSV-QLLTSIDADGGLPASPRIRFNKDG---C---LLAVSTNDNGIKILAT  647 (1082)
Q Consensus       588 ~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~i~~~~~s~dg---~---~l~~~~~dg~i~iwd~  647 (1082)
                      .+|+++....|.||-.... ........+.+...|.+++|-++.   .   .|++++-.|.+.+|++
T Consensus       179 lIAVSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I  245 (717)
T PF08728_consen  179 LIAVSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI  245 (717)
T ss_pred             EEEEecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence            7778888888888865442 111111122233468999997743   2   7888899999999887

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3

Probab=89.06  E-value=25  Score=34.73  Aligned_cols=113  Identities=13%  Similarity=0.208  Sum_probs=69.4

Q ss_pred             CccEEEeecCCCeEEEeeCCeEEEEecC--CCeeEEEECCCCCCeeEEEEecCCCcEEEEEeCCC------cEEEE---e
Q 001415          788 AVPCFALSKNDSYVMSASGGKISLFNMM--TFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDS------SIQIY---N  856 (1082)
Q Consensus       788 ~i~~l~~s~dg~~l~~~sdg~i~iwd~~--~~~~~~~~~~~~~~v~~l~~sp~~~~~lasg~~dg------~v~iw---d  856 (1082)
                      ....++.++.+.++++.+.+.|.+|++.  ..+...++..- +.|..++++. .|.+|++--++.      .+|+|   +
T Consensus        19 EP~~~c~~g~d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv-~~V~~l~y~~-~GDYlvTlE~k~~~~~~~fvR~Y~NWr   96 (215)
T PF14761_consen   19 EPTAVCCGGPDALFVAASGCKVEVYDLEQEECPLLCTFSTV-GRVLQLVYSE-AGDYLVTLEEKNKRSPVDFVRAYFNWR   96 (215)
T ss_pred             CcceeeccCCceEEEEcCCCEEEEEEcccCCCceeEEEcch-hheeEEEecc-ccceEEEEEeecCCccceEEEEEEEhh
Confidence            3445555554555565667889999988  45566677654 7899999999 899999864432      55665   2


Q ss_pred             cc--cceee-eeeccc---------------------ccCEEEEEEeCCCCEEEEEeCCCcEEEEEcCCcc
Q 001415          857 VR--VDEVK-SKLKGH---------------------SKRITGLAFSHALNVLVSSGADSQLCVWSSDGWE  903 (1082)
Q Consensus       857 ~~--~~~~~-~~l~~h---------------------~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~  903 (1082)
                      ..  ..+.+ .++-||                     ..++.+++-.|-..-|+.|+ ++.+.+|.+....
T Consensus        97 ~~~~~~~~v~vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~-~~~l~lf~l~~~~  166 (215)
T PF14761_consen   97 SQKEENSPVRVRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGC-GNKLVLFTLKYQT  166 (215)
T ss_pred             hhcccCCcEEEEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEc-CCEEEEEEEEEEE
Confidence            22  11111 123332                     23456676666544455555 4568999887643

>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3

Probab=88.54  E-value=42  Score=36.75  Aligned_cols=196  Identities=9%  Similarity=0.086  Sum_probs=103.9

Q ss_pred             CCcEEEEEeCCCcEEEEecccceeeeeecccccCEEEEEEe----CCCCE--EEEEe-CC---CcEEEEEcCCcccccce
Q 001415          839 DNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFS----HALNV--LVSSG-AD---SQLCVWSSDGWEKQKNR  908 (1082)
Q Consensus       839 ~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s----~d~~~--l~s~s-~D---g~i~vwd~~~~~~~~~~  908 (1082)
                      ...+++....++-+.+||+.. +.+..+.  .++++.+..-    -+|+.  |+.++ .+   .+|++|.++....   .
T Consensus        67 ~kSlIigTdK~~GL~VYdL~G-k~lq~~~--~Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g---~  140 (381)
T PF02333_consen   67 AKSLIIGTDKKGGLYVYDLDG-KELQSLP--VGRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTG---E  140 (381)
T ss_dssp             GG-EEEEEETTTEEEEEETTS--EEEEE---SS-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTT---E
T ss_pred             ccceEEEEeCCCCEEEEcCCC-cEEEeec--CCCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCC---c
Confidence            445777777888999999884 4445553  2344544432    13433  44444 32   4699998875211   1


Q ss_pred             eeeccCC-C--CCCCCCCcEEEE--cC-CCcEEEE--EecCeEEEEEcc---Cc----ceeeeeccCCCCcceeEEEEcC
Q 001415          909 FLQIPTG-R--TPTAQSDTRVQF--HQ-DQIHFLV--VHETQLAIFETT---KL----ECVKQWVPRESSAPITHATFSC  973 (1082)
Q Consensus       909 ~~~~~~~-~--~~~~~~v~~~~f--sp-dg~~l~~--~~d~~i~iwd~~---~~----~~~~~~~~~~h~~~i~~l~~s~  973 (1082)
                      +...... +  ......+..+|+  ++ +|.+.+.  ..+|.+.-|.+.   .+    +.++.|..   .+.+..+....
T Consensus       141 L~~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~---~sQ~EGCVVDD  217 (381)
T PF02333_consen  141 LTDVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKV---GSQPEGCVVDD  217 (381)
T ss_dssp             EEE-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE----SS-EEEEEEET
T ss_pred             ceEcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecC---CCcceEEEEec
Confidence            1111110 0  011123456666  33 4665555  467877777653   33    45677764   34788888888


Q ss_pred             CCceEEEeecCCcEEEEecCC-----ceeeeeeCCCeecCCCCCCCCceeeEEEEeCC-CCCeEEEEecCCcEEEEccCC
Q 001415          974 DSQLVYACFLDATVCVFSAAN-----LKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQ-EPNEFALGLSDGGVHVFEPLE 1047 (1082)
Q Consensus       974 dg~~l~t~s~dg~v~vwd~~~-----~~~~~~~~~~~~~~~gh~~~~v~~~~~~~~~~-d~~~l~s~~~dg~v~vW~~~~ 1047 (1082)
                      ...+|+.+-++--|.-|+.+-     +..+....      ..|-...+-.+.+-..++ .|.+|+|.-.+++..||+...
T Consensus       218 e~g~LYvgEE~~GIW~y~Aep~~~~~~~~v~~~~------g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r~~  291 (381)
T PF02333_consen  218 ETGRLYVGEEDVGIWRYDAEPEGGNDRTLVASAD------GDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDREG  291 (381)
T ss_dssp             TTTEEEEEETTTEEEEEESSCCC-S--EEEEEBS------SSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEESST
T ss_pred             ccCCEEEecCccEEEEEecCCCCCCcceeeeccc------ccccccCccceEEEecCCCCeEEEEEcCCCCeEEEEecCC
Confidence            888999998887777777652     22222221      111122255566655542 344667777778999999876


Q ss_pred             CC
Q 001415         1048 SE 1049 (1082)
Q Consensus      1048 ~~ 1049 (1082)
                      ..
T Consensus       292 ~~  293 (381)
T PF02333_consen  292 PN  293 (381)
T ss_dssp             T-
T ss_pred             CC
Confidence            43

1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.

>KOG2377 consensus Uncharacterized conserved protein [Function unknown]

Probab=88.36  E-value=13  Score=40.35  Aligned_cols=158  Identities=9%  Similarity=0.020  Sum_probs=86.7

Q ss_pred             EEEEEeCCCCEEEEEeCCCcEEEEEcCCcccccceeeeccCCCCCCCCCCcEEEEcCCCcEEEE-EecCeEEEEEccCcc
Q 001415          874 TGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFETTKLE  952 (1082)
Q Consensus       874 ~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~-~~d~~i~iwd~~~~~  952 (1082)
                      +.+-|. |.+..+.+-..|.+.=|.++.....-  .....   ....+.|.++.||+|.+.||+ -.+..|.+++....+
T Consensus        26 ngvFfD-DaNkqlfavrSggatgvvvkgpndDV--piSfd---m~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~   99 (657)
T KOG2377|consen   26 NGVFFD-DANKQLFAVRSGGATGVVVKGPNDDV--PISFD---MDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDN   99 (657)
T ss_pred             cceeec-cCcceEEEEecCCeeEEEEeCCCCCC--Cceee---ecCCCceeEEEeccCcceEEEEecCceEEEEecCCCc
Confidence            344444 33333333344556677666532111  11111   111267899999999999999 688999998873332


Q ss_pred             ee--eeeccCCCCcceeEEEEcCCCceEEEeecCCcEEEEecCCceeeeeeCCCeecCCCCCCCCceeeEEEEeCCCCCe
Q 001415          953 CV--KQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNE 1030 (1082)
Q Consensus       953 ~~--~~~~~~~h~~~i~~l~~s~dg~~l~t~s~dg~v~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~~~~~~~d~~~ 1030 (1082)
                      ..  ....+...+..|...+|+.. .-+|..+ +.-+.+|.+...+...++-      ..   +...+-..+|.+. .+.
T Consensus       100 ~~l~~~~~ck~k~~~IlGF~W~~s-~e~A~i~-~~G~e~y~v~pekrslRlV------ks---~~~nvnWy~yc~e-t~v  167 (657)
T KOG2377|consen  100 SQLEYTQECKTKNANILGFCWTSS-TEIAFIT-DQGIEFYQVLPEKRSLRLV------KS---HNLNVNWYMYCPE-TAV  167 (657)
T ss_pred             hhhHHHHHhccCcceeEEEEEecC-eeEEEEe-cCCeEEEEEchhhhhhhhh------hh---cccCccEEEEccc-cce
Confidence            22  22222233556899999876 4455554 4456677665433322211      11   2233447889984 443


Q ss_pred             -E-EEEecCCcEEEEccCCCC
Q 001415         1031 -F-ALGLSDGGVHVFEPLESE 1049 (1082)
Q Consensus      1031 -l-~s~~~dg~v~vW~~~~~~ 1049 (1082)
                       | +++-..+++.=+-++++.
T Consensus       168 ~LL~t~~~~n~lnpf~~~~~~  188 (657)
T KOG2377|consen  168 ILLSTTVLENVLNPFHFRAGT  188 (657)
T ss_pred             EeeeccccccccccEEEeece
Confidence             3 333355666666666665

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=88.16  E-value=5.6  Score=45.50  Aligned_cols=59  Identities=19%  Similarity=0.369  Sum_probs=38.8

Q ss_pred             cCCCCceeeeccCCceeEEEecccCCCCccccccccCcccccceeEEEEccCCceeeecccCCeEEEee
Q 001415          679 LADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWK  747 (1082)
Q Consensus       679 s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iw~  747 (1082)
                      .|.++.++.+..||.+.+|+.........+..        ..+-..+.|...|  +++.++|....-|.
T Consensus        23 hp~~~s~v~~~~d~si~lfn~~~r~qski~~~--------~~p~~nlv~tnhg--l~~~tsdrr~la~~   81 (1636)
T KOG3616|consen   23 HPGGQSFVLAHQDGSIILFNFIPRRQSKICEE--------AKPKENLVFTNHG--LVTATSDRRALAWK   81 (1636)
T ss_pred             cCCCceEEEEecCCcEEEEeecccchhhhhhh--------cCCccceeeeccc--eEEEeccchhheee
Confidence            58899999999999999999876443333321        1223445666655  56666666666664

>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []

Probab=88.15  E-value=77  Score=39.28  Aligned_cols=174  Identities=11%  Similarity=0.143  Sum_probs=103.1

Q ss_pred             CCCCccEEEee---c----CCCeEEEeeCCeEEEEecCCC---------------eeEEEECC---CCCCeeEEEEecCC
Q 001415          785 PEEAVPCFALS---K----NDSYVMSASGGKISLFNMMTF---------------KTMATFMP---PPPAATFLAFHPQD  839 (1082)
Q Consensus       785 ~~~~i~~l~~s---~----dg~~l~~~sdg~i~iwd~~~~---------------~~~~~~~~---~~~~v~~l~~sp~~  839 (1082)
                      ...+|..|+|+   .    ..++|++-....+.|+...-.               .++..+..   .......++|+|.+
T Consensus        78 ~~~PI~qI~fa~~~~~~~~~~~~l~Vrt~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~FnP~~  157 (765)
T PF10214_consen   78 DGSPIKQIKFATLSESFDEKSRWLAVRTETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAFNPWD  157 (765)
T ss_pred             CCCCeeEEEecccccccCCcCcEEEEEcCCEEEEEEcccccccccccCCccccccceeEEechhhcCCCccceEEeccCc
Confidence            46788888887   2    234777777777888872211               12222221   22346677888777


Q ss_pred             CcEEEEEeCCCcEEEEecccceeeeeecccccCEEEEEEeCCCCEEEEEeCCCcEEEEEcCCcccccceeeeccCCCCCC
Q 001415          840 NNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPT  919 (1082)
Q Consensus       840 ~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~  919 (1082)
                      ...||+-...|...||++.....     .+. ..          +-+.....|.| +.|....                 
T Consensus       158 ~~q~AiVD~~G~Wsvw~i~~~~~-----~~~-~~----------~~~~~~~~gsi-~~d~~e~-----------------  203 (765)
T PF10214_consen  158 QRQFAIVDEKGNWSVWDIKGRPK-----RKS-SN----------LRLSRNISGSI-IFDPEEL-----------------  203 (765)
T ss_pred             cceEEEEeccCcEEEEEeccccc-----cCC-cc----------eeeccCCCccc-cCCCccc-----------------
Confidence            77888888888888888721110     000 11          11112222333 2222210                 


Q ss_pred             CCCCcEEEEcCCCcEEEEEecCeEEEEEccCcceeeeeccCCCCcceeEEEEcCC--CceEEEeecCCcEEEEecCCc
Q 001415          920 AQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPRESSAPITHATFSCD--SQLVYACFLDATVCVFSAANL  995 (1082)
Q Consensus       920 ~~~v~~~~fspdg~~l~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~d--g~~l~t~s~dg~v~vwd~~~~  995 (1082)
                       ..-..+.|.++-..|++++...+.++|+++......+........|..+.-+|+  +..++..  ...|.+.++...
T Consensus       204 -s~w~rI~W~~~~~~lLv~~r~~l~~~d~~~~~~~~~l~~~~~~~~IlDv~~~~~~~~~~FiLT--s~eiiw~~~~~~  278 (765)
T PF10214_consen  204 -SNWKRILWVSDSNRLLVCNRSKLMLIDFESNWQTEYLVTAKTWSWILDVKRSPDNPSHVFILT--SKEIIWLDVKSS  278 (765)
T ss_pred             -CcceeeEecCCCCEEEEEcCCceEEEECCCCCccchhccCCChhheeeEEecCCccceEEEEe--cCeEEEEEccCC
Confidence             223578899998899999999999999987766442332344678999998887  3333332  257777787763

These proteins are found in fungi.

>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins

Probab=88.11  E-value=13  Score=43.00  Aligned_cols=130  Identities=9%  Similarity=-0.004  Sum_probs=72.2

Q ss_pred             EEEcCCCcEEEEEecCeEEEEEccCcceeeeeccCCCC-cceeEEEEcCCCceEEEeec-------------CCcEEEEe
Q 001415          926 VQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPRESS-APITHATFSCDSQLVYACFL-------------DATVCVFS  991 (1082)
Q Consensus       926 ~~fspdg~~l~~~~d~~i~iwd~~~~~~~~~~~~~~h~-~~i~~l~~s~dg~~l~t~s~-------------dg~v~vwd  991 (1082)
                      +.+-++|.+++... ..+..+|. .|+.+..+...+.. .-=..+..-|+|.+|+.+..             .-.|..+|
T Consensus       153 ~~~l~nG~ll~~~~-~~~~e~D~-~G~v~~~~~l~~~~~~~HHD~~~l~nGn~L~l~~~~~~~~~~~~~~~~~D~Ivevd  230 (477)
T PF05935_consen  153 FKQLPNGNLLIGSG-NRLYEIDL-LGKVIWEYDLPGGYYDFHHDIDELPNGNLLILASETKYVDEDKDVDTVEDVIVEVD  230 (477)
T ss_dssp             EEE-TTS-EEEEEB-TEEEEE-T-T--EEEEEE--TTEE-B-S-EEE-TTS-EEEEEEETTEE-TS-EE---S-EEEEE-
T ss_pred             eeEcCCCCEEEecC-CceEEEcC-CCCEEEeeecCCcccccccccEECCCCCEEEEEeecccccCCCCccEecCEEEEEC
Confidence            56678888887644 77888887 46666666543311 01134567899999888772             12356667


Q ss_pred             cCCceeeeeeCCCeecC-C----------------CCCCCCceeeEEEEeCCCCCeEEEEecCCcEEEEccCCCCCcccc
Q 001415          992 AANLKLRCRINPSAYLP-A----------------GVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESEGKWGV 1054 (1082)
Q Consensus       992 ~~~~~~~~~~~~~~~~~-~----------------gh~~~~v~~~~~~~~~~d~~~l~s~~~dg~v~vW~~~~~~~~~~~ 1054 (1082)
                       .+|+.+..+.....+. .                +...++.+.-++.+.+.++.+++++-.-..|...|..+++-.|.+
T Consensus       231 -~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Nsi~yd~~dd~iivSsR~~s~V~~Id~~t~~i~Wil  309 (477)
T PF05935_consen  231 -PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINSIDYDPSDDSIIVSSRHQSAVIKIDYRTGKIKWIL  309 (477)
T ss_dssp             -TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEEEEEETTTTEEEEEETTT-EEEEEE-TTS-EEEEE
T ss_pred             -CCCCEEEEEehHHhCCcccccccccccccccccCCCCCCccccCccEEeCCCCeEEEEcCcceEEEEEECCCCcEEEEe
Confidence             8888877665444331 1                112444566789999976667776666669999999999988888


Q ss_pred             CCCC
Q 001415         1055 PPPV 1058 (1082)
Q Consensus      1055 ~~~~ 1058 (1082)
                      ..+-
T Consensus       310 g~~~  313 (477)
T PF05935_consen  310 GPPG  313 (477)
T ss_dssp             S-ST
T ss_pred             CCCC
Confidence            7653

Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.

>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=88.08  E-value=12  Score=46.46  Aligned_cols=147  Identities=14%  Similarity=0.166  Sum_probs=92.9

Q ss_pred             eCCCcEEEEecccceeeeeecccccCEEEEEEe--------CCCCEEEEEeCCCcEEEEEcCCcccccc--eeeeccCCC
Q 001415          847 MDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFS--------HALNVLVSSGADSQLCVWSSDGWEKQKN--RFLQIPTGR  916 (1082)
Q Consensus       847 ~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s--------~d~~~l~s~s~Dg~i~vwd~~~~~~~~~--~~~~~~~~~  916 (1082)
                      +-|..+.+|+..++.....+.+-+..|..+..-        |.=+++...+.--.|.++-+.-.+....  .+..... -
T Consensus        96 TiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~-i  174 (1311)
T KOG1900|consen   96 TIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSFK-I  174 (1311)
T ss_pred             EeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCccccccccee-e
Confidence            358899999999987788888877778777653        2223444444445577765544322111  1111100 0


Q ss_pred             CCCCCCCcEEEEcCCCcEEEEEecCeEEEE--EccCc---c-ee-------------ee-ecc-CCCCcceeEEEEcCCC
Q 001415          917 TPTAQSDTRVQFHQDQIHFLVVHETQLAIF--ETTKL---E-CV-------------KQ-WVP-RESSAPITHATFSCDS  975 (1082)
Q Consensus       917 ~~~~~~v~~~~fspdg~~l~~~~d~~i~iw--d~~~~---~-~~-------------~~-~~~-~~h~~~i~~l~~s~dg  975 (1082)
                      ......|.++....+|+.+.+|.||.++=.  ....+   + |-             .. +.. ..+.++|..++.....
T Consensus       175 ~~dg~~V~~I~~t~nGRIF~~G~dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~SR  254 (1311)
T KOG1900|consen  175 SVDGVSVNCITYTENGRIFFAGRDGNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDNSR  254 (1311)
T ss_pred             ecCCceEEEEEeccCCcEEEeecCCCEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEecccc
Confidence            011245788898999999999988854322  22111   1 10             00 111 2457799999998888


Q ss_pred             ceEEEeecCCcEEEEecCC
Q 001415          976 QLVYACFLDATVCVFSAAN  994 (1082)
Q Consensus       976 ~~l~t~s~dg~v~vwd~~~  994 (1082)
                      ..|.+-++.|+|.+|++..
T Consensus       255 ~IlY~lsek~~v~~Y~i~~  273 (1311)
T KOG1900|consen  255 NILYVLSEKGTVSAYDIGG  273 (1311)
T ss_pred             ceeeeeccCceEEEEEccC
Confidence            8999999999999999986

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=87.85  E-value=2.6  Score=49.54  Aligned_cols=136  Identities=13%  Similarity=0.144  Sum_probs=79.7

Q ss_pred             CceEEEEecCC-CeEEEEEcCCCcEEEEEccccceeeeeceeeeccCCC--CcccccccccCCCCceeEEEEe--cCCCe
Q 001415          360 SPMSMDFHPVQ-QTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGAC--SMPLQAALVKDPGVSVNRVIWS--PDGSL  434 (1082)
Q Consensus       360 ~v~~~~~spdg-~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~--~~~~~~~~~~~h~~~V~~l~~s--pdg~~  434 (1082)
                      .|+.|....=| +.+|+.+..||.|.+|.+++=-......  .-+....  .......+.......++.+++.  ...++
T Consensus       102 tIN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~--~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rl  179 (717)
T PF08728_consen  102 TINFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERF--SEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRL  179 (717)
T ss_pred             eeeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhh--ccccccccccccCCCCeEeecCCceeEEEEEecCcceE
Confidence            35555444322 2378889999999999874311000000  0000000  0000011122334589999999  88899


Q ss_pred             EEEEeCCCeEEEEEccCCceeeEEEEeeccccCeeEEEecCCCC--c--eEEEEEeCCCcEEEEEcc
Q 001415          435 FGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNK--Q--LCVITCGDDKTIKVWDAT  497 (1082)
Q Consensus       435 las~~~d~~v~iwd~~~~~~~~~~~~~~~h~~~V~~l~fs~dg~--~--~~l~s~s~d~~i~vwd~~  497 (1082)
                      ||+++....|.||-......-.....-..|...|-+|+|-++..  .  ..+++++-.|.+.+|++.
T Consensus       180 IAVSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I~  246 (717)
T PF08728_consen  180 IAVSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKIK  246 (717)
T ss_pred             EEEecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEEE
Confidence            99999999888887654211111111123667899999977651  1  368889999999998873

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins

Probab=87.79  E-value=23  Score=40.85  Aligned_cols=121  Identities=14%  Similarity=0.151  Sum_probs=64.6

Q ss_pred             EEEeCCCCEEEEEeCCCcEEEEEcCCcccccceeeeccCCCCCCCCCCcEEEEcCCCcEEEEEe--------------cC
Q 001415          876 LAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVH--------------ET  941 (1082)
Q Consensus       876 l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~~--------------d~  941 (1082)
                      +.+.++|.+++..+  ..+..+|+.+... ..  .....+..   ..--.+.+-|+|.+|+.+.              +.
T Consensus       153 ~~~l~nG~ll~~~~--~~~~e~D~~G~v~-~~--~~l~~~~~---~~HHD~~~l~nGn~L~l~~~~~~~~~~~~~~~~~D  224 (477)
T PF05935_consen  153 FKQLPNGNLLIGSG--NRLYEIDLLGKVI-WE--YDLPGGYY---DFHHDIDELPNGNLLILASETKYVDEDKDVDTVED  224 (477)
T ss_dssp             EEE-TTS-EEEEEB--TEEEEE-TT--EE-EE--EE--TTEE----B-S-EEE-TTS-EEEEEEETTEE-TS-EE---S-
T ss_pred             eeEcCCCCEEEecC--CceEEEcCCCCEE-Ee--eecCCccc---ccccccEECCCCCEEEEEeecccccCCCCccEecC
Confidence            55678888887665  6677788765321 11  11111100   0013577889999888754              23


Q ss_pred             eEEEEEccCcceeeeeccCCCC-------------------------cceeEEEEcC-CCceEEEeecCCcEEEEecCCc
Q 001415          942 QLAIFETTKLECVKQWVPRESS-------------------------APITHATFSC-DSQLVYACFLDATVCVFSAANL  995 (1082)
Q Consensus       942 ~i~iwd~~~~~~~~~~~~~~h~-------------------------~~i~~l~~s~-dg~~l~t~s~dg~v~vwd~~~~  995 (1082)
                      .|..+| .+|+.+..|....|-                         -.++++.+.+ ++.+|+++-.-..|...|..++
T Consensus       225 ~Ivevd-~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Nsi~yd~~dd~iivSsR~~s~V~~Id~~t~  303 (477)
T PF05935_consen  225 VIVEVD-PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINSIDYDPSDDSIIVSSRHQSAVIKIDYRTG  303 (477)
T ss_dssp             EEEEE--TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEEEEEETTTTEEEEEETTT-EEEEEE-TTS
T ss_pred             EEEEEC-CCCCEEEEEehHHhCCcccccccccccccccccCCCCCCccccCccEEeCCCCeEEEEcCcceEEEEEECCCC
Confidence            466667 777777766544331                         2478899988 5666665555568888999999


Q ss_pred             eeeeeeCCCe
Q 001415          996 KLRCRINPSA 1005 (1082)
Q Consensus       996 ~~~~~~~~~~ 1005 (1082)
                      ++.-.+..+.
T Consensus       304 ~i~Wilg~~~  313 (477)
T PF05935_consen  304 KIKWILGPPG  313 (477)
T ss_dssp             -EEEEES-ST
T ss_pred             cEEEEeCCCC
Confidence            9988777443

Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.

>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]

Probab=86.79  E-value=10  Score=47.79  Aligned_cols=60  Identities=12%  Similarity=0.112  Sum_probs=37.7

Q ss_pred             CCcEEEEEecCeEEEEEccCcceeeeeccCCCCcceeEEEEcCCCceEEEeecCCcEEEEecCCcee
Q 001415          931 DQIHFLVVHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKL  997 (1082)
Q Consensus       931 dg~~l~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~dg~~l~t~s~dg~v~vwd~~~~~~  997 (1082)
                      ....+.....+.+.+|+.........+...++       ..+.++..++++..||.+..||...+..
T Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~v~~h~Dgs~~fWd~s~g~~  268 (993)
T KOG1983|consen  209 PTKILIGFNRGLVVIKDRASKYVQSAYLPNGQ-------LESRDGSHFVSYHTDGSYAFWDVSSGKL  268 (993)
T ss_pred             CCCcceeeeeeeeeehhcccccchhhcccccc-------cCccCCceEEEEEecCCEEeeecCCCce
Confidence            33333333444555555443333333333222       2288999999999999999999999866

>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]

Probab=86.75  E-value=11  Score=36.52  Aligned_cols=159  Identities=13%  Similarity=-0.008  Sum_probs=94.6

Q ss_pred             CCCEEEEEeCC--CcEEEEEcCCcccccceeeeccCCCCCCCCCCcEEEEcCCCcEEEEEecCeEEEEEccCcceeeeec
Q 001415          881 ALNVLVSSGAD--SQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWV  958 (1082)
Q Consensus       881 d~~~l~s~s~D--g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~~d~~i~iwd~~~~~~~~~~~  958 (1082)
                      +|.++.+.+.-  ..|++||+.+++....+.+.......      ..+.-..|.-+..+-.++.-..||.++.+++..+.
T Consensus        55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~Fg------EGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~  128 (262)
T COG3823          55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFG------EGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFS  128 (262)
T ss_pred             CCEEEEeccccccceeEEEeccCceEEEEeecCCccccc------cceeeccceEEEEEeccceeEEEChHHhhhhcccc
Confidence            56777777653  45999999987765544444111111      12233345556666789999999999999988876


Q ss_pred             cCCCCcceeEEEEcCCCceEEEeecCCcEEEEecCCceeeeeeCCCeecCCCCCCCCce-eeEEEEeCCCCCeEEEEecC
Q 001415          959 PRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVH-PLVIAAHPQEPNEFALGLSD 1037 (1082)
Q Consensus       959 ~~~h~~~i~~l~~s~dg~~l~t~s~dg~v~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~-~~~~~~~~~d~~~l~s~~~d 1037 (1082)
                      ..+   .=+.++  .|++-|..++...++..-|-.+.....++....   .|   ..|. .--+.|.  ||...|-.-.+
T Consensus       129 y~G---eGWgLt--~d~~~LimsdGsatL~frdP~tfa~~~~v~VT~---~g---~pv~~LNELE~V--dG~lyANVw~t  195 (262)
T COG3823         129 YEG---EGWGLT--SDDKNLIMSDGSATLQFRDPKTFAELDTVQVTD---DG---VPVSKLNELEWV--DGELYANVWQT  195 (262)
T ss_pred             cCC---cceeee--cCCcceEeeCCceEEEecCHHHhhhcceEEEEE---CC---eecccccceeee--ccEEEEeeeee
Confidence            544   223333  466667766555566666666655544433111   01   1111 1124444  57777777778


Q ss_pred             CcEEEEccCCCC-CccccCCCC
Q 001415         1038 GGVHVFEPLESE-GKWGVPPPV 1058 (1082)
Q Consensus      1038 g~v~vW~~~~~~-~~~~~~~~~ 1058 (1082)
                      ..|...++.+|+ ..|....+.
T Consensus       196 ~~I~rI~p~sGrV~~widlS~L  217 (262)
T COG3823         196 TRIARIDPDSGRVVAWIDLSGL  217 (262)
T ss_pred             cceEEEcCCCCcEEEEEEccCC
Confidence            888888888888 444443333

>KOG2377 consensus Uncharacterized conserved protein [Function unknown]

Probab=85.09  E-value=16  Score=39.77  Aligned_cols=105  Identities=5%  Similarity=0.042  Sum_probs=69.7

Q ss_pred             ccccCEEEEEEeCCCCEEEEEeCCCcEEEEEcCCcccccceeeeccCCCCCCCCCCcEEEEcCCCcEEEEEecCeEEEEE
Q 001415          868 GHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFE  947 (1082)
Q Consensus       868 ~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~~d~~i~iwd  947 (1082)
                      ...++|.++.||+|.+.||.--.|.+|.+.+....+.......    .+......|....|+.. .-+|...+..+.+|-
T Consensus        64 ~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~----~ck~k~~~IlGF~W~~s-~e~A~i~~~G~e~y~  138 (657)
T KOG2377|consen   64 DDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQ----ECKTKNANILGFCWTSS-TEIAFITDQGIEFYQ  138 (657)
T ss_pred             cCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHH----HhccCcceeEEEEEecC-eeEEEEecCCeEEEE
Confidence            3567999999999999999999999999999855332211111    11111145788888877 666666666677776


Q ss_pred             ccCc-ceeeeeccCCCCcceeEEEEcCCCceEE
Q 001415          948 TTKL-ECVKQWVPRESSAPITHATFSCDSQLVY  979 (1082)
Q Consensus       948 ~~~~-~~~~~~~~~~h~~~i~~l~~s~dg~~l~  979 (1082)
                      .... +.++..+  .|.-.|....|.++-..++
T Consensus       139 v~pekrslRlVk--s~~~nvnWy~yc~et~v~L  169 (657)
T KOG2377|consen  139 VLPEKRSLRLVK--SHNLNVNWYMYCPETAVIL  169 (657)
T ss_pred             Echhhhhhhhhh--hcccCccEEEEccccceEe
Confidence            5332 2223222  4567788888888877543

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=84.96  E-value=4.4  Score=40.91  Aligned_cols=78  Identities=6%  Similarity=0.084  Sum_probs=53.6

Q ss_pred             EeCCCCEEEEEeCCCcEEEEEcCCcccccce--eeeccCCC----CCCCCCCcEEEEcCCCcEEEEEecCeEEEEEccCc
Q 001415          878 FSHALNVLVSSGADSQLCVWSSDGWEKQKNR--FLQIPTGR----TPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKL  951 (1082)
Q Consensus       878 ~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~--~~~~~~~~----~~~~~~v~~~~fspdg~~l~~~~d~~i~iwd~~~~  951 (1082)
                      +..++.+|+..+.+|.+++||+.+++.....  +.......    ......|..+.++.+|.-+++-.+|..+.|+.+-+
T Consensus        18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~lsng~~y~y~~~L~   97 (219)
T PF07569_consen   18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLSNGDSYSYSPDLG   97 (219)
T ss_pred             EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEeCCCEEEeccccc
Confidence            4457889999999999999999996643322  11111100    01225678899999999988877788999987655


Q ss_pred             ceee
Q 001415          952 ECVK  955 (1082)
Q Consensus       952 ~~~~  955 (1082)
                      .-+.
T Consensus        98 ~W~~  101 (219)
T PF07569_consen   98 CWIR  101 (219)
T ss_pred             eeEE
Confidence            4433

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>COG1520 FOG: WD40-like repeat [Function unknown]

Probab=84.76  E-value=71  Score=35.58  Aligned_cols=205  Identities=15%  Similarity=0.106  Sum_probs=103.5

Q ss_pred             EecCCCeEEEEEcCCCcEEEEEccccceeeeeceeeeccCCCCcccccccccCCCCceeEEEEecCCCeEEEEeCCCeEE
Q 001415          366 FHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQ  445 (1082)
Q Consensus       366 ~spdg~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d~~v~  445 (1082)
                      .--||+  +.++..+|.|.-.|.+++..+       |.....          +....+.+-.+..+|+ |.+++.++.+.
T Consensus        65 ~~~dg~--v~~~~~~G~i~A~d~~~g~~~-------W~~~~~----------~~~~~~~~~~~~~~G~-i~~g~~~g~~y  124 (370)
T COG1520          65 ADGDGT--VYVGTRDGNIFALNPDTGLVK-------WSYPLL----------GAVAQLSGPILGSDGK-IYVGSWDGKLY  124 (370)
T ss_pred             EeeCCe--EEEecCCCcEEEEeCCCCcEE-------ecccCc----------CcceeccCceEEeCCe-EEEecccceEE
Confidence            445665  556678888888888888754       221110          0111222223333776 66677888888


Q ss_pred             EEEccCCceeeEEEEeeccc-cCeeEEEecCCCCceEEEEEeCCCcEEEEEccCCceeEEeecCCc---CeEEEeeeecC
Q 001415          446 IYSYHGGDEVRQHLEIDAHV-GGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEA---PVYSVCPHHKE  521 (1082)
Q Consensus       446 iwd~~~~~~~~~~~~~~~h~-~~V~~l~fs~dg~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~---~v~~~~~~~~~  521 (1082)
                      .+|..+|+.+-.   ..... ..+..-..-.++.   +..++.++.+.-.|..+|+.+........   .+..-..  ..
T Consensus       125 ~ld~~~G~~~W~---~~~~~~~~~~~~~v~~~~~---v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~--~~  196 (370)
T COG1520         125 ALDASTGTLVWS---RNVGGSPYYASPPVVGDGT---VYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIYGSPA--IA  196 (370)
T ss_pred             EEECCCCcEEEE---EecCCCeEEecCcEEcCcE---EEEecCCCeEEEEEccCCcEEEEEecCCccccccccCce--ee
Confidence            889888876652   22222 1122223333443   44444778888888888888766443221   1111000  11


Q ss_pred             CceEEEEecC--CCcEEEEecCCCCceeeecCC----CCceEEEEEccCCCeeeecccccceeEEEecCCCCEEEEEeCC
Q 001415          522 NIQFIFSTAL--DGKIKAWLYDNLGSRVDYEAP----GRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDD  595 (1082)
Q Consensus       522 ~~~~l~s~~~--dg~i~iwd~~~~~~~~~~~~~----~~~v~~~~~s~d~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d  595 (1082)
                      + ..++.+..  ++.+.-.|..++.........    ...+........+ .++              - +..+..++.+
T Consensus       197 ~-~~vy~~~~~~~~~~~a~~~~~G~~~w~~~~~~~~~~~~~~~~~~~~~~-~v~--------------v-~~~~~~~~~~  259 (370)
T COG1520         197 S-GTVYVGSDGYDGILYALNAEDGTLKWSQKVSQTIGRTAISTTPAVDGG-PVY--------------V-DGGVYAGSYG  259 (370)
T ss_pred             c-ceEEEecCCCcceEEEEEccCCcEeeeeeeecccCcccccccccccCc-eEE--------------E-CCcEEEEecC
Confidence            2 24444444  444555555544443331110    0000000000000 000              0 1124566777


Q ss_pred             CeEEEEECCCcceEEEEecC
Q 001415          596 FSIKFWDMDSVQLLTSIDAD  615 (1082)
Q Consensus       596 g~i~iwd~~~~~~~~~~~~~  615 (1082)
                      +.+...|..+++.+..+...
T Consensus       260 g~~~~l~~~~G~~~W~~~~~  279 (370)
T COG1520         260 GKLLCLDADTGELIWSFPAG  279 (370)
T ss_pred             CeEEEEEcCCCceEEEEecc
Confidence            88888999999998887653

>KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown]

Probab=84.73  E-value=1.2e+02  Score=38.20  Aligned_cols=448  Identities=10%  Similarity=-0.018  Sum_probs=0.0

Q ss_pred             ccccCCCCceeEEEEec--CCCeEEE-----EeCCCeEEEEEccCCceeeEEEEeeccccCeeEEEecCCCCceEEEEEe
Q 001415          414 ALVKDPGVSVNRVIWSP--DGSLFGV-----AYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCG  486 (1082)
Q Consensus       414 ~~~~~h~~~V~~l~~sp--dg~~las-----~~~d~~v~iwd~~~~~~~~~~~~~~~h~~~V~~l~fs~dg~~~~l~s~s  486 (1082)
                      ....||...|.|....-  ++..|..     .+.||.+.|=|..--..+.    -.|....|..+.........++|..-
T Consensus       341 ~mgdG~qR~veC~~C~G~a~~~~L~aPvala~a~DGSl~VGDfNyIRRI~----~dg~v~tIl~L~~t~~sh~Yy~AvsP  416 (1899)
T KOG4659|consen  341 AMGDGHQRDVECPKCEGKADSISLFAPVALAYAPDGSLIVGDFNYIRRIS----QDGQVSTILTLGLTDTSHSYYIAVSP  416 (1899)
T ss_pred             eccCcccccccCCCCCCccccceeeceeeEEEcCCCcEEEccchheeeec----CCCceEEEEEecCCCccceeEEEecC


Q ss_pred             CCCcEEEEEccCCceeEEeecCCcCeEEEeeeecCCceEEEEecCCCcEEEEecCCCCceeeecCCCCceEEEEEccCCC
Q 001415          487 DDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGT  566 (1082)
Q Consensus       487 ~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~  566 (1082)
                      -||++.|=|..+.+..+        |.++.-.....+.-+++|+.+..+-.=+. .+..-......-.....++|+.+|.
T Consensus       417 vdgtlyvSdp~s~qv~r--------v~sl~~~d~~~N~evvaG~Ge~Clp~des-CGDGalA~dA~L~~PkGIa~dk~g~  487 (1899)
T KOG4659|consen  417 VDGTLYVSDPLSKQVWR--------VSSLEPQDSRNNYEVVAGDGEVCLPADES-CGDGALAQDAQLIFPKGIAFDKMGN  487 (1899)
T ss_pred             cCceEEecCCCcceEEE--------eccCCccccccCeeEEeccCcCccccccc-cCcchhcccceeccCCceeEccCCc


Q ss_pred             eeeecccccceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEEecCCCC-------CCcCeEEEcCCCCEEEEEECC
Q 001415          567 RTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGL-------PASPRIRFNKDGCLLAVSTND  639 (1082)
Q Consensus       567 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-------~~i~~~~~s~dg~~l~~~~~d  639 (1082)
                                    -+-.|+..+-....+|.|.-.=-.++.....+...+..       .+.+.++.+|-.+-|.+-..+
T Consensus       488 --------------lYfaD~t~IR~iD~~giIstlig~~~~~~~p~~C~~~~kl~~~~leWPT~LaV~Pmdnsl~Vld~n  553 (1899)
T KOG4659|consen  488 --------------LYFADGTRIRVIDTTGIISTLIGTTPDQHPPRTCAQITKLVDLQLEWPTSLAVDPMDNSLLVLDTN  553 (1899)
T ss_pred             --------------EEEecccEEEEeccCceEEEeccCCCCccCccccccccchhheeeecccceeecCCCCeEEEeecc


Q ss_pred             CcEEEEEecCCccceeecccccccccccccccCCCCccccCCCCceeeeccCCceeEEEecccCCCCccccccccCcccc
Q 001415          640 NGIKILATSDGIRLLRTFENLAYDASRTSENSKNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRA  719 (1082)
Q Consensus       640 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~  719 (1082)
                      -.+++                                  .++++..+..+.--...+=.............       .-
T Consensus       554 vvlri----------------------------------t~~~rV~Ii~GrP~hC~~a~~t~~~skla~H~-------tl  592 (1899)
T KOG4659|consen  554 VVLRI----------------------------------TVVHRVRIILGRPTHCDLANATSSASKLADHR-------TL  592 (1899)
T ss_pred             eEEEE----------------------------------ccCccEEEEcCCccccccCCCchhhhhhhhhh-------hh


Q ss_pred             cceeEEEEccCCceeeecccC---CeEEEeeccccccCCCCCcccccCccccCCCCcceeecccCCCCCCCCccEEEeec
Q 001415          720 TKISRLIFTNSGNAILALASN---AIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSK  796 (1082)
Q Consensus       720 ~~i~~~~~s~~~~~l~~~~~d---~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~  796 (1082)
                      ..-.+++++++|...++-+..   +.++.-..+. ...+-......+..++--........-......+-..+.++|.+|
T Consensus       593 ~~~r~Iavg~~G~lyvaEsD~rriNrvr~~~tdg-~i~ilaGa~S~C~C~~~~~cdcfs~~~~~At~A~lnsp~alaVsP  671 (1899)
T KOG4659|consen  593 LIQRDIAVGTDGALYVAESDGRRINRVRKLSTDG-TISILAGAKSPCSCDVAACCDCFSLRDVAATQAKLNSPYALAVSP  671 (1899)
T ss_pred             hhhhceeecCCceEEEEeccchhhhheEEeccCc-eEEEecCCCCCCCcccccCCccccccchhhhccccCCcceEEECC


Q ss_pred             CCCeEEEeeCCe--------------EEEEecC--CCeeEEEECCCCCCeeEEEEecCCCcEEEEE---eCCCcEEEEec
Q 001415          797 NDSYVMSASGGK--------------ISLFNMM--TFKTMATFMPPPPAATFLAFHPQDNNIIAIG---MDDSSIQIYNV  857 (1082)
Q Consensus       797 dg~~l~~~sdg~--------------i~iwd~~--~~~~~~~~~~~~~~v~~l~~sp~~~~~lasg---~~dg~v~iwd~  857 (1082)
                      ||..+++-..+.              .+.|.+.  ..+.+.+|..|......+.+-..+--+-++-   +.+|.+.-.--
T Consensus       672 dg~v~IAD~gN~rIr~Vs~~~~~~~~sr~YEi~~p~~QE~Y~Fnr~GqH~sTvsliTget~ynFtY~v~ss~~~lsei~~  751 (1899)
T KOG4659|consen  672 DGDVIIADSGNSRIRKVSARMAKYDGSRTYEITDPERQEKYTFNRHGQHSSTVSLITGETFYNFTYQVDSSIGMLSEITD  751 (1899)
T ss_pred             CCcEEEecCCchhhhhhhhcccccCCCceeeccCcccceeEEEeccceeeeeEEEEeceeEEEEEEecCCCcchhhhhhh


Q ss_pred             ccceeeeeecccccCEEEEEEeCCCCEEEEEeCCCcEEEEEcCCcccccceeeeccCCCCCCCCCCcEEEEcCCCcEEEE
Q 001415          858 RVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV  937 (1082)
Q Consensus       858 ~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~  937 (1082)
                      .+|..+..++...+-+..+.--....++...+.||+++.-....                   .......+.-.-..|++
T Consensus       752 a~Gn~l~ilrd~~s~~~~~~~~~~q~~~l~~~~~g~L~~vSt~d-------------------~~~~~~ty~g~tglL~T  812 (1899)
T KOG4659|consen  752 ASGNVLRVLRDNDSLFDLETTLGGQTTLLMSAYDGTLEQVSTRD-------------------ATSRDATYLGYTGLLLT  812 (1899)
T ss_pred             cCCcEEEEEecCCCCcceeecCCCcEEEEEEecCCceeEeccCC-------------------Cccceeeeeccccceee


Q ss_pred             --EecCeEEEEEcc
Q 001415          938 --VHETQLAIFETT  949 (1082)
Q Consensus       938 --~~d~~i~iwd~~  949 (1082)
                        -..|.-.+|+.+
T Consensus       813 k~d~tg~~~~yeYD  826 (1899)
T KOG4659|consen  813 KRDDTGTAVVYEYD  826 (1899)
T ss_pred             eecccceEEEEccc

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=83.80  E-value=5.9  Score=40.00  Aligned_cols=75  Identities=13%  Similarity=0.103  Sum_probs=51.9

Q ss_pred             EEEecCCCeEEEEEcCCCcEEEEEccccceeeeeceeeeccCCCCccccccccc-------CCCCceeEEEEecCCCeEE
Q 001415          364 MDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVK-------DPGVSVNRVIWSPDGSLFG  436 (1082)
Q Consensus       364 ~~~spdg~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~-------~h~~~V~~l~~spdg~~la  436 (1082)
                      +.+..++.+ |.+-+.+|.+++||+.+++.+... +.+..           ++.       .....|..+.++.+|.-|+
T Consensus        16 ~~l~~~~~~-Ll~iT~~G~l~vWnl~~~k~~~~~-~Si~p-----------ll~~~~~~~~~~~~~i~~~~lt~~G~PiV   82 (219)
T PF07569_consen   16 SFLECNGSY-LLAITSSGLLYVWNLKKGKAVLPP-VSIAP-----------LLNSSPVSDKSSSPNITSCSLTSNGVPIV   82 (219)
T ss_pred             EEEEeCCCE-EEEEeCCCeEEEEECCCCeeccCC-ccHHH-----------HhcccccccCCCCCcEEEEEEcCCCCEEE
Confidence            335667886 666788999999999998877631 11111           122       4567889999998888777


Q ss_pred             EEeCCCeEEEEEccCC
Q 001415          437 VAYSRHIVQIYSYHGG  452 (1082)
Q Consensus       437 s~~~d~~v~iwd~~~~  452 (1082)
                      +-+ +|....|+.+-+
T Consensus        83 ~ls-ng~~y~y~~~L~   97 (219)
T PF07569_consen   83 TLS-NGDSYSYSPDLG   97 (219)
T ss_pred             EEe-CCCEEEeccccc
Confidence            654 477888886644

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=83.57  E-value=24  Score=38.98  Aligned_cols=153  Identities=14%  Similarity=0.136  Sum_probs=92.2

Q ss_pred             EEecCCCCEEEE-EeCCCeEEEEECCCcceEEEEecCCCCCCcCeEEEcCCC--------CEEEEEECCCcEEEEEecCC
Q 001415          580 VQFDTTKNRFLA-AGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDG--------CLLAVSTNDNGIKILATSDG  650 (1082)
Q Consensus       580 ~~~~~~~~~l~~-~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~dg--------~~l~~~~~dg~i~iwd~~~~  650 (1082)
                      +..+.+...++. ++....++-.|++.|+.+..+..+..   + -+.|.|+.        +.| +|-.+..|.-.|.+-.
T Consensus       473 mlh~~dssli~~dg~~~~kLykmDIErGkvveeW~~~dd---v-vVqy~p~~kf~qmt~eqtl-vGlS~~svFrIDPR~~  547 (776)
T COG5167         473 MLHDNDSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDD---V-VVQYNPYFKFQQMTDEQTL-VGLSDYSVFRIDPRAR  547 (776)
T ss_pred             eeecCCcceEEecCCCcccceeeecccceeeeEeecCCc---c-eeecCCchhHHhcCccceE-EeecccceEEeccccc
Confidence            334444444444 66777888889999999999987765   2 46777753        334 3444555555554432


Q ss_pred             ccceeecccccccccccccccCCCCccccCCCCceeeeccCCceeEEEecccCCCCccccccccCcccccceeEEEEccC
Q 001415          651 IRLLRTFENLAYDASRTSENSKNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNS  730 (1082)
Q Consensus       651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~  730 (1082)
                      ...+...+......   --.|   .........++++++..|.|++||--....     ...+|+  -...|..+..+.+
T Consensus       548 gNKi~v~esKdY~t---Kn~F---ss~~tTesGyIa~as~kGDirLyDRig~rA-----KtalP~--lG~aIk~idvta~  614 (776)
T COG5167         548 GNKIKVVESKDYKT---KNKF---SSGMTTESGYIAAASRKGDIRLYDRIGKRA-----KTALPG--LGDAIKHIDVTAN  614 (776)
T ss_pred             CCceeeeeehhccc---cccc---cccccccCceEEEecCCCceeeehhhcchh-----hhcCcc--cccceeeeEeecC
Confidence            12222222111111   1111   111244567899999999999999654322     122333  5678999999999


Q ss_pred             CceeeecccCCeEEEeecccc
Q 001415          731 GNAILALASNAIHLLWKWQRT  751 (1082)
Q Consensus       731 ~~~l~~~~~d~~i~iw~~~~~  751 (1082)
                      |+.+++.+.. .+.+-|+...
T Consensus       615 Gk~ilaTCk~-yllL~d~~ik  634 (776)
T COG5167         615 GKHILATCKN-YLLLTDVPIK  634 (776)
T ss_pred             CcEEEEeecc-eEEEEecccc
Confidence            9988887766 5666665543

>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast [])

Probab=83.48  E-value=4.8  Score=38.99  Aligned_cols=31  Identities=32%  Similarity=0.555  Sum_probs=25.5

Q ss_pred             CceeEEEEecCC------CeEEEEeCCCeEEEEEccC
Q 001415          421 VSVNRVIWSPDG------SLFGVAYSRHIVQIYSYHG  451 (1082)
Q Consensus       421 ~~V~~l~~spdg------~~las~~~d~~v~iwd~~~  451 (1082)
                      ..|.+++|||-|      -+||+.+.++.|.||....
T Consensus        86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~  122 (173)
T PF12657_consen   86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG  122 (173)
T ss_pred             ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence            389999999943      4788889999999998764

The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].

>PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A

Probab=83.20  E-value=1e+02  Score=36.14  Aligned_cols=80  Identities=9%  Similarity=0.177  Sum_probs=47.1

Q ss_pred             CCeEEEeeCCeEEEEecCCCeeEEEECC-CCCCeeEEEEecCCCcEEEEEeCCCcEEEEecccceeeeeec-----cccc
Q 001415          798 DSYVMSASGGKISLFNMMTFKTMATFMP-PPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLK-----GHSK  871 (1082)
Q Consensus       798 g~~l~~~sdg~i~iwd~~~~~~~~~~~~-~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~-----~h~~  871 (1082)
                      +..++-.....|++.+...++....... ....|.+.+...   .+++.+..++.+..+.+..........     ....
T Consensus       418 ~~~ivQVt~~~i~l~~~~~~~~~~~w~~~~~~~I~~a~~~~---~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  494 (504)
T PF10433_consen  418 DGRIVQVTPKGIRLIDLEDGKLTQEWKPPAGSIIVAASIND---PQVLVALSGGELVYFELDDNKISVSDNDETILELDN  494 (504)
T ss_dssp             TTEEEEEESSEEEEEESSSTSEEEEEE-TTS---SEEEESS---SEEEEEE-TTEEEEEEEETTEEEEEEE----EE-SS
T ss_pred             CCeEEEEecCeEEEEECCCCeEEEEEeCCCCCeEEEEEECC---CEEEEEEeCCcEEEEEEECCceeeeeeccccccCCC
Confidence            5566666677799998887777665533 344566666643   466667778899999888765532222     1457


Q ss_pred             CEEEEEEeC
Q 001415          872 RITGLAFSH  880 (1082)
Q Consensus       872 ~V~~l~~s~  880 (1082)
                      .|.|+..+|
T Consensus       495 eis~l~i~p  503 (504)
T PF10433_consen  495 EISCLSIEP  503 (504)
T ss_dssp             -EEEEE---
T ss_pred             ceEEEEeCC
Confidence            788888765

...

>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family

Probab=83.07  E-value=90  Score=35.43  Aligned_cols=66  Identities=17%  Similarity=0.126  Sum_probs=41.3

Q ss_pred             ecCCCCCceEEEEecCCCeEEEEEcCCCcEEEEEccccceeeeeceeeeccCCCCcccccccccCCCCceeEEEEecCC
Q 001415          354 TLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDG  432 (1082)
Q Consensus       354 ~~~h~~~v~~~~~spdg~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg  432 (1082)
                      ....-...+.|+|.|||+ +|++--..|.|++++-.++.......+.            ......-.+....|+|+||-
T Consensus        25 va~GL~~Pw~maflPDG~-llVtER~~G~I~~v~~~~~~~~~~~~l~------------~v~~~~ge~GLlglal~PdF   90 (454)
T TIGR03606        25 LLSGLNKPWALLWGPDNQ-LWVTERATGKILRVNPETGEVKVVFTLP------------EIVNDAQHNGLLGLALHPDF   90 (454)
T ss_pred             EECCCCCceEEEEcCCCe-EEEEEecCCEEEEEeCCCCceeeeecCC------------ceeccCCCCceeeEEECCCc
Confidence            334557789999999998 5666544699999986654322110000            00011136678999999984

PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.

>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=82.89  E-value=13  Score=46.31  Aligned_cols=171  Identities=12%  Similarity=0.210  Sum_probs=101.1

Q ss_pred             CCCCCcceeeecCCCCCceEEEEecCCCeEEEEEcCCCcEEEEEccccceeeeeceeeeccCCCCcccccccccCCCCce
Q 001415          344 PEDLPKTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSV  423 (1082)
Q Consensus       344 ~~~~~~~~~~~~~h~~~v~~~~~spdg~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V  423 (1082)
                      ...+|..+....+|...-+.|-+-|.=.+..+|  .|+.+.+|+++++.....                   +.+-...|
T Consensus        64 v~~IP~el~eq~~~~~~~~~mGiFpeI~RaWiT--iDn~L~lWny~~~~e~~~-------------------~d~~shtI  122 (1311)
T KOG1900|consen   64 VVNIPDELLEQFSNIECKTDMGIFPEIGRAWIT--IDNNLFLWNYESDNELAE-------------------YDGLSHTI  122 (1311)
T ss_pred             cccCCHHHHHHhcCcceeeeeccchhhcceEEE--eCCeEEEEEcCCCCcccc-------------------ccchhhhh
Confidence            345566666666666666666666665544554  689999999998655442                   33344444


Q ss_pred             eEEE--------EecCCCeEEEEeCCCeEEEEEccCCceee------EEEEeeccccCeeEEEecCCCCceEEEEEeCCC
Q 001415          424 NRVI--------WSPDGSLFGVAYSRHIVQIYSYHGGDEVR------QHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDK  489 (1082)
Q Consensus       424 ~~l~--------~spdg~~las~~~d~~v~iwd~~~~~~~~------~~~~~~~h~~~V~~l~fs~dg~~~~l~s~s~d~  489 (1082)
                      ..+.        |-|.=++|.+-+.--.|.|+-+.-.+...      ....+....-.|.|+....+|+  +++ +|.||
T Consensus       123 l~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~i~~dg~~V~~I~~t~nGR--IF~-~G~dg  199 (1311)
T KOG1900|consen  123 LKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSFKISVDGVSVNCITYTENGR--IFF-AGRDG  199 (1311)
T ss_pred             eeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccccccceeeecCCceEEEEEeccCCc--EEE-eecCC
Confidence            4443        23344455554445556666543221110      1112233355788999888888  444 45566


Q ss_pred             cEEEEEcc----CC---c-ee----------------EEee-cCCcCeEEEeeeecCCceEEEEecCCCcEEEEecCC
Q 001415          490 TIKVWDAT----NG---A-KQ----------------YIFE-GHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDN  542 (1082)
Q Consensus       490 ~i~vwd~~----~~---~-~~----------------~~~~-~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~  542 (1082)
                        .+|.+.    +|   + +-                -.+. .+..+|..+.+..+.  ..+.+-+..|+|.+||+..
T Consensus       200 --~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~SR--~IlY~lsek~~v~~Y~i~~  273 (1311)
T KOG1900|consen  200 --NLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDNSR--NILYVLSEKGTVSAYDIGG  273 (1311)
T ss_pred             --CEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEecccc--ceeeeeccCceEEEEEccC
Confidence              555543    11   1 11                1122 466788888875443  6888999999999999875

>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]

Probab=82.87  E-value=39  Score=42.74  Aligned_cols=36  Identities=33%  Similarity=0.522  Sum_probs=29.0

Q ss_pred             CCCCceEEEEecCCCeEEEEEcCCCcEEEEEccccce
Q 001415          357 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRER  393 (1082)
Q Consensus       357 h~~~v~~~~~spdg~~llasgs~dg~i~iwd~~~~~~  393 (1082)
                      -......++|+|..+ ++|.|+..|.|.++-...-+.
T Consensus        34 ~~~~~~~~afD~~q~-llai~t~tg~i~~yg~~~ve~   69 (993)
T KOG1983|consen   34 FPSTPSALAFDPTQG-LLAIGTRTGAIKIYGQPGVEF   69 (993)
T ss_pred             CCCCCcceeeccccc-eEEEEEecccEEEecccceEE
Confidence            345678899999999 799999999999998654433

>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3

Probab=82.79  E-value=80  Score=34.68  Aligned_cols=199  Identities=17%  Similarity=0.273  Sum_probs=104.4

Q ss_pred             cCCCeEEEEeCCCeEEEEEccCCceeeEEEEeeccccCeeEEEe----cCCCCceEEEEEe-CC---CcEEEEEccC-Cc
Q 001415          430 PDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAF----SHPNKQLCVITCG-DD---KTIKVWDATN-GA  500 (1082)
Q Consensus       430 pdg~~las~~~d~~v~iwd~~~~~~~~~~~~~~~h~~~V~~l~f----s~dg~~~~l~s~s-~d---~~i~vwd~~~-~~  500 (1082)
                      |...+++....++-+.+||++... +.   .+.  .+.++.+..    .-+|+..-|+.++ .+   .+|++|.+.. ..
T Consensus        66 p~kSlIigTdK~~GL~VYdL~Gk~-lq---~~~--~Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g  139 (381)
T PF02333_consen   66 PAKSLIIGTDKKGGLYVYDLDGKE-LQ---SLP--VGRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTG  139 (381)
T ss_dssp             GGG-EEEEEETTTEEEEEETTS-E-EE---EE---SS-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTT
T ss_pred             cccceEEEEeCCCCEEEEcCCCcE-EE---eec--CCCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCC
Confidence            456677777888899999998754 33   222  233333332    2245442243433 32   4699998763 12


Q ss_pred             eeEEeec-------CCcCeEEEeeeecC-Cc-eEEEEecCCCcEEEEecCCCC-ceeeecCCCCceEEEEEccCCCeeee
Q 001415          501 KQYIFEG-------HEAPVYSVCPHHKE-NI-QFIFSTALDGKIKAWLYDNLG-SRVDYEAPGRWCTTMAYSADGTRTYQ  570 (1082)
Q Consensus       501 ~~~~~~~-------h~~~v~~~~~~~~~-~~-~~l~s~~~dg~i~iwd~~~~~-~~~~~~~~~~~v~~~~~s~d~~~~~~  570 (1082)
                      .+..+..       ....+..+|+..++ +| -+.+....+|.+..|.+.... .....    ..|+.+..         
T Consensus       140 ~L~~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~----~lVR~f~~---------  206 (381)
T PF02333_consen  140 ELTDVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSA----TLVREFKV---------  206 (381)
T ss_dssp             EEEE-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEE----EEEEEEE----------
T ss_pred             cceEcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEee----EEEEEecC---------
Confidence            3443322       12346788876543 33 467777888999888775311 11100    11222222         


Q ss_pred             cccccceeEEEecCCCCEEEEEeCCCeEEEEECCC-----cceEEEEecCCCCCCcCeEEEc--CCC-CEEEE-EECCCc
Q 001415          571 GFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDS-----VQLLTSIDADGGLPASPRIRFN--KDG-CLLAV-STNDNG  641 (1082)
Q Consensus       571 ~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~-----~~~~~~~~~~~~~~~i~~~~~s--~dg-~~l~~-~~~dg~  641 (1082)
                         ...+..+..+....+|+.+-++.-|.-|+.+.     ++.+.......-...+..+++-  .++ .||++ .-.+++
T Consensus       207 ---~sQ~EGCVVDDe~g~LYvgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~s  283 (381)
T PF02333_consen  207 ---GSQPEGCVVDDETGRLYVGEEDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNS  283 (381)
T ss_dssp             ---SS-EEEEEEETTTTEEEEEETTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTE
T ss_pred             ---CCcceEEEEecccCCEEEecCccEEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCCCCe
Confidence               12455666777777899999988888887752     2223222222222345566663  343 34444 445678


Q ss_pred             EEEEEecCC
Q 001415          642 IKILATSDG  650 (1082)
Q Consensus       642 i~iwd~~~~  650 (1082)
                      ..+|+....
T Consensus       284 f~Vy~r~~~  292 (381)
T PF02333_consen  284 FAVYDREGP  292 (381)
T ss_dssp             EEEEESSTT
T ss_pred             EEEEecCCC
Confidence            999997654

1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.

>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family

Probab=82.73  E-value=28  Score=39.39  Aligned_cols=61  Identities=11%  Similarity=0.100  Sum_probs=37.9

Q ss_pred             ccCEEEEEEeCCCCEEEEEeCCCcEEEEEcCCcccccceeeeccCCCC-CCCCCCcEEEEcCCC
Q 001415          870 SKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRT-PTAQSDTRVQFHQDQ  932 (1082)
Q Consensus       870 ~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~fspdg  932 (1082)
                      -...+.|+|.|||++|++--..|.|++++-.++....  ......... ........|+|+|+-
T Consensus        29 L~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~--~~~l~~v~~~~ge~GLlglal~PdF   90 (454)
T TIGR03606        29 LNKPWALLWGPDNQLWVTERATGKILRVNPETGEVKV--VFTLPEIVNDAQHNGLLGLALHPDF   90 (454)
T ss_pred             CCCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceee--eecCCceeccCCCCceeeEEECCCc
Confidence            3456889999999888776556999998765543211  111110000 012567899999884

PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.

>PRK13614 lipoprotein LpqB; Provisional

Probab=81.61  E-value=1.1e+02  Score=36.08  Aligned_cols=161  Identities=11%  Similarity=0.132  Sum_probs=86.7

Q ss_pred             CeeEEEEecCCCcEEEEEeCCCcEEEEecccceee-eeecccccCEEEEEEeCCCCEEEEEeCCC--cEEEEEcCC-ccc
Q 001415          829 AATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVK-SKLKGHSKRITGLAFSHALNVLVSSGADS--QLCVWSSDG-WEK  904 (1082)
Q Consensus       829 ~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~-~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg--~i~vwd~~~-~~~  904 (1082)
                      .+.+.+.++ ++..+|....++. .+|-...+... ..+.+.  .++.-.|.++| ++-++..+.  .|....-.. ++.
T Consensus       344 ~~~s~avS~-~g~~~A~~~~~~~-~l~~~~~g~~~~~~~~g~--~Lt~PS~d~~g-~vWtv~~g~~~~vv~~~~~g~~~~  418 (573)
T PRK13614        344 GPASPAESP-VSQTVAFLNGSRT-TLYTVSPGQPARALTSGS--TLTRPSFSPQD-WVWTAGPGGNGRIVAYRPTGVAEG  418 (573)
T ss_pred             cccceeecC-CCceEEEecCCCc-EEEEecCCCcceeeecCC--CccCCcccCCC-CEEEeeCCCCceEEEEecCCCccc
Confidence            578899999 8888887776662 33432223222 233332  46677788877 555554433  444443221 111


Q ss_pred             ccceeeeccCCCCCCCCCCcEEEEcCCCcEEEEE--ecCe--EEEEEc---cCcc--eeeeeccCCCCcceeEEEEcCCC
Q 001415          905 QKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV--HETQ--LAIFET---TKLE--CVKQWVPRESSAPITHATFSCDS  975 (1082)
Q Consensus       905 ~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~--~d~~--i~iwd~---~~~~--~~~~~~~~~h~~~i~~l~~s~dg  975 (1082)
                      .......... .......|..+..|+||..++..  .++.  |.|--+   ..|.  .+.....-++...+.++.|..++
T Consensus       419 ~~~~~~~v~~-~~l~g~~I~~lrvSrDG~R~Avi~~~~g~~~V~va~V~R~~~G~P~~L~~~~~~~~~~~~~sl~W~~~~  497 (573)
T PRK13614        419 AQAPTVTLTA-DWLAGRTVKELRVSREGVRALVISEQNGKSRVQVAGIVRNEDGTPRELTAPITLAADSDADTGAWVGDS  497 (573)
T ss_pred             ccccceeecc-cccCCCeeEEEEECCCccEEEEEEEeCCccEEEEEEEEeCCCCCeEEccCceecccCCCcceeEEcCCC
Confidence            0000000000 01111348999999999998883  4665  665433   2343  11111111234688999999999


Q ss_pred             ceEEEee---cCCcEEEEecCCc
Q 001415          976 QLVYACF---LDATVCVFSAANL  995 (1082)
Q Consensus       976 ~~l~t~s---~dg~v~vwd~~~~  995 (1082)
                      .+++.+.   .+-.+++..+..+
T Consensus       498 sl~V~~~~~~~~~~~~~v~v~~g  520 (573)
T PRK13614        498 TVVVTKASATSNVVPELLSVDAG  520 (573)
T ss_pred             EEEEEeccCCCcceEEEEEeCCC
Confidence            9877654   2234566666444

>COG5290 IkappaB kinase complex, IKAP component [Transcription]

Probab=81.45  E-value=41  Score=39.44  Aligned_cols=92  Identities=10%  Similarity=0.133  Sum_probs=53.2

Q ss_pred             EEEEeCCCCEEEEEeCCC-----cEEEEEcCCcccccceeeeccCCCCCCCCCCcEEEEcCCCcEEEEEecCeEEEEEcc
Q 001415          875 GLAFSHALNVLVSSGADS-----QLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETT  949 (1082)
Q Consensus       875 ~l~~s~d~~~l~s~s~Dg-----~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~~d~~i~iwd~~  949 (1082)
                      .+.|-|.|..++|-+.||     .|.++.-++-...... ++...     ...+..++|.-....++.+..+.+.+|...
T Consensus       251 ~LSWkpqgS~~ati~td~~~~S~~ViFfErNGLrHGef~-lr~~~-----dEk~~~~~wn~~s~vlav~~~n~~~lwttk  324 (1243)
T COG5290         251 QLSWKPQGSKYATIGTDGCSTSESVIFFERNGLRHGEFD-LRVGC-----DEKAFLENWNLLSTVLAVAEGNLLKLWTTK  324 (1243)
T ss_pred             ccccccCCceeeeeccCCCCCcceEEEEccCCcccCCcc-ccCCc-----hhhhhhhhhhHHHHHHHHhhcceEEEEEcc
Confidence            378999999999987665     3666665542211100 11111     123456677777777777888899999876


Q ss_pred             CcceeeeeccCCCCcceeEEEEcCC
Q 001415          950 KLECVKQWVPRESSAPITHATFSCD  974 (1082)
Q Consensus       950 ~~~~~~~~~~~~h~~~i~~l~~s~d  974 (1082)
                      +-.......  -.-..+.-+.|.|.
T Consensus       325 NyhWYLK~e--~~ip~~s~vkwhpe  347 (1243)
T COG5290         325 NYHWYLKVE--RQIPGISYVKWHPE  347 (1243)
T ss_pred             ceEEEEEEe--ecCCCcceeeeccc
Confidence            654332222  11233455566653

>PRK13615 lipoprotein LpqB; Provisional

Probab=81.14  E-value=1.2e+02  Score=35.54  Aligned_cols=154  Identities=9%  Similarity=-0.014  Sum_probs=87.7

Q ss_pred             eeEEEEecCCCcEEEEEeCCCcEEEEecccceeeeeecccccCEEEEEEeCCCCEEEEEeCCCcEEEEEcCC-cccccce
Q 001415          830 ATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDG-WEKQKNR  908 (1082)
Q Consensus       830 v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~-~~~~~~~  908 (1082)
                      ..+++.++ ++..+|....++.++++... +.....+.  ...++.-.|.++| ++-++..+...++..... ++..   
T Consensus       336 ~~s~avS~-dg~~~A~v~~~~~l~vg~~~-~~~~~~~~--~~~Lt~PS~d~~g-~vWtv~~g~~~~l~~~~~~G~~~---  407 (557)
T PRK13615        336 ADAATLSA-DGRQAAVRNASGVWSVGDGD-RDAVLLDT--RPGLVAPSLDAQG-YVWSTPASDPRGLVAWGPDGVGH---  407 (557)
T ss_pred             cccceEcC-CCceEEEEcCCceEEEecCC-Ccceeecc--CCccccCcCcCCC-CEEEEeCCCceEEEEecCCCceE---
Confidence            37889999 78888877778878887655 22222222  2245666777777 554544433445544332 2221   


Q ss_pred             eeeccCCCCCCCCCCcEEEEcCCCcEEEEEe----cCeEEEEEccC-cc---ee-ee-eccCCCCcceeEEEEcCCCceE
Q 001415          909 FLQIPTGRTPTAQSDTRVQFHQDQIHFLVVH----ETQLAIFETTK-LE---CV-KQ-WVPRESSAPITHATFSCDSQLV  978 (1082)
Q Consensus       909 ~~~~~~~~~~~~~~v~~~~fspdg~~l~~~~----d~~i~iwd~~~-~~---~~-~~-~~~~~h~~~i~~l~~s~dg~~l  978 (1082)
                      .....-   .....|..+..|+||..++...    .++|.|--+.. +.   .+ .. .........+.++.|..++.+.
T Consensus       408 ~v~v~~---~~~~~I~~lrvSrDG~R~Avi~~~~g~~~V~va~V~R~~~~P~~L~~~p~~l~~~l~~v~sl~W~~~~~la  484 (557)
T PRK13615        408 PVAVSW---TATGRVVSLEVARDGARVLVQLETGAGPQLLVASIVRDGGVPTSLTTTPLELLASPGTPLDATWVDELDVA  484 (557)
T ss_pred             Eeeccc---cCCCeeEEEEeCCCccEEEEEEecCCCCEEEEEEEEeCCCcceEeeeccEEcccCcCcceeeEEcCCCEEE
Confidence            111111   1115699999999999998832    25666543322 22   12 11 1111123488999999999986


Q ss_pred             EEee---cCCcEEEEecCC
Q 001415          979 YACF---LDATVCVFSAAN  994 (1082)
Q Consensus       979 ~t~s---~dg~v~vwd~~~  994 (1082)
                      +.+.   .+..+++..+..
T Consensus       485 Vl~~~~~~~~~v~~v~v~g  503 (557)
T PRK13615        485 TLTLAPDGERQVELHQVGG  503 (557)
T ss_pred             EEeccCCCCceEEEEECCC
Confidence            6653   234566666653

>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast [])

Probab=80.81  E-value=11  Score=36.55  Aligned_cols=31  Identities=16%  Similarity=0.319  Sum_probs=26.0

Q ss_pred             cCEEEEEEeCCC------CEEEEEeCCCcEEEEEcCC
Q 001415          871 KRITGLAFSHAL------NVLVSSGADSQLCVWSSDG  901 (1082)
Q Consensus       871 ~~V~~l~~s~d~------~~l~s~s~Dg~i~vwd~~~  901 (1082)
                      ..|.+++|||-|      -+|++.+.++.|.||.-..
T Consensus        86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~  122 (173)
T PF12657_consen   86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG  122 (173)
T ss_pred             ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence            378999999954      4688999999999998764

The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].

>smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2

Probab=80.80  E-value=86  Score=33.68  Aligned_cols=209  Identities=10%  Similarity=-0.022  Sum_probs=100.8

Q ss_pred             CCCCccEEEeecCCCeEEEeeCCe--EEEEecCCCee---------------EEEECCCCCCeeEEEEecCCCcEEEEEe
Q 001415          785 PEEAVPCFALSKNDSYVMSASGGK--ISLFNMMTFKT---------------MATFMPPPPAATFLAFHPQDNNIIAIGM  847 (1082)
Q Consensus       785 ~~~~i~~l~~s~dg~~l~~~sdg~--i~iwd~~~~~~---------------~~~~~~~~~~v~~l~~sp~~~~~lasg~  847 (1082)
                      +...|+++...+..+.|++-++..  ++.+++.....               ....-++.......+........++++.
T Consensus        41 ~~~~v~q~~v~~~~~lLi~Lsgk~~~L~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~tkGc~~~~v~~~~~~~~l~~A  120 (302)
T smart00036       41 GRRSVTQIWVLEENNVLLMISGKKPQLYSHPLSALVEKKEALGSARLVIRKNVLTKIPDTKGCHLCAVVNGKRSLFLCVA  120 (302)
T ss_pred             CcCceEEEEEEhhhCEEEEEeCCcceEEEEEHHHhhhhhhccCCccccccccceEeCCcCCceEEEEEEcCCCcEEEEEE
Confidence            567899999999999888888765  99999853221               0111123333444444431222333444


Q ss_pred             CCCcEEEEecccc----eeeeee---c-ccccCEEEEEEeCC--CCEEEEEeCCCcEEEEEcCC--cccccceeeeccCC
Q 001415          848 DDSSIQIYNVRVD----EVKSKL---K-GHSKRITGLAFSHA--LNVLVSSGADSQLCVWSSDG--WEKQKNRFLQIPTG  915 (1082)
Q Consensus       848 ~dg~v~iwd~~~~----~~~~~l---~-~h~~~V~~l~~s~d--~~~l~s~s~Dg~i~vwd~~~--~~~~~~~~~~~~~~  915 (1082)
                      ...+|.++.....    .....+   . --..++..+..+++  ...|..|+..+...++++..  ..... ..+.....
T Consensus       121 ~~~~i~l~~~~~~~~~f~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~lcvG~~~~~~~~~~~~~~~~~~~d-~sl~~~~~  199 (302)
T smart00036      121 LQSSVVLLQWYNPLKKFKLFKSKFLFPLISPVPVFVELVSSSFERPGICIGSDKGGGDVVQFHESLVSKED-LSLPFLSE  199 (302)
T ss_pred             cCCeEEEEEccChhhhhhhhcccccccCCCCccceEeeecccccceEEEEEEcCCCCeEEEEeeccccccc-cccccccc
Confidence            4566777643321    111110   0 01123444443433  45677776642345555543  11000 00000000


Q ss_pred             CCCCCCCCcEEEEcCCCcEEEEEecCeEEEEEccCc-ceeeeeccCCCCcceeEEEEcCCCceEEEeecCCcEEEEecCC
Q 001415          916 RTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKL-ECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAAN  994 (1082)
Q Consensus       916 ~~~~~~~v~~~~fspdg~~l~~~~d~~i~iwd~~~~-~~~~~~~~~~h~~~i~~l~~s~dg~~l~t~s~dg~v~vwd~~~  994 (1082)
                      ..  .....++..-+++.+|++ .|....+-|.. | +..+.... .=...+.++++.  ..+|+.-+ +..|.|+++.+
T Consensus       200 ~~--~~~p~~i~~l~~~e~Llc-~~~~~v~Vn~~-G~~~~r~~~l-~w~~~p~~~~~~--~pyll~~~-~~~ievr~l~~  271 (302)
T smart00036      200 ET--SLKPISVVQVPRDEFLLC-YDEFGVFVNLY-GKRRSRNPIL-HWEFMPESFAYH--SPYLLAFH-DNGIEIRSIKT  271 (302)
T ss_pred             cc--ccCceEEEEECCCeEEEE-ECcEEEEEeCC-CCccccceEE-EcCCcccEEEEE--CCEEEEEc-CCcEEEEECCC
Confidence            00  002233444445555544 34444444443 3 22111110 013455677776  35666554 56699999999


Q ss_pred             ceeeeeeC
Q 001415          995 LKLRCRIN 1002 (1082)
Q Consensus       995 ~~~~~~~~ 1002 (1082)
                      +++++.+.
T Consensus       272 ~~l~q~i~  279 (302)
T smart00036      272 GELLQELA  279 (302)
T ss_pred             CceEEEEe
Confidence            99988776

Unpublished observations.

>PF12768 Rax2: Cortical protein marker for cell polarity

Probab=80.61  E-value=51  Score=34.69  Aligned_cols=90  Identities=10%  Similarity=0.186  Sum_probs=57.6

Q ss_pred             cEEEEEccccceeeeeceeeeccCCCCcccccccccCCCCceeEEEEecCCCeEEEEe------CCCeEEEEEccCCcee
Q 001415          382 DIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAY------SRHIVQIYSYHGGDEV  455 (1082)
Q Consensus       382 ~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~------~d~~v~iwd~~~~~~~  455 (1082)
                      .|++||..+.+-..                   ...+-.+.|+++.|..+.+.++.|.      ....+..||..+..-.
T Consensus        17 ~lC~yd~~~~qW~~-------------------~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~   77 (281)
T PF12768_consen   17 GLCLYDTDNSQWSS-------------------PGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTWS   77 (281)
T ss_pred             EEEEEECCCCEeec-------------------CCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCeee
Confidence            58999988766543                   1334567999999997777777774      3557889999876432


Q ss_pred             eEEEEeec-----cccCeeEEEecC-CCCceEEEEEe-CCC--cEEEEE
Q 001415          456 RQHLEIDA-----HVGGVNDIAFSH-PNKQLCVITCG-DDK--TIKVWD  495 (1082)
Q Consensus       456 ~~~~~~~~-----h~~~V~~l~fs~-dg~~~~l~s~s-~d~--~i~vwd  495 (1082)
                          .+.+     -.++|..+.+.. |+.. +.+.|. .++  .|..||
T Consensus        78 ----~~~~~~s~~ipgpv~a~~~~~~d~~~-~~~aG~~~~g~~~l~~~d  121 (281)
T PF12768_consen   78 ----SLGGGSSNSIPGPVTALTFISNDGSN-FWVAGRSANGSTFLMKYD  121 (281)
T ss_pred             ----ecCCcccccCCCcEEEEEeeccCCce-EEEeceecCCCceEEEEc
Confidence                2333     246788888743 3333 444443 333  366665

>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal

Probab=80.42  E-value=45  Score=30.18  Aligned_cols=118  Identities=13%  Similarity=0.086  Sum_probs=0.0

Q ss_pred             CcEEEEcCCCcEEEE-EecCeEEEEEcc--------CcceeeeeccCCCCcceeEEEEcC----CCceEEEeecCCcEEE
Q 001415          923 DTRVQFHQDQIHFLV-VHETQLAIFETT--------KLECVKQWVPRESSAPITHATFSC----DSQLVYACFLDATVCV  989 (1082)
Q Consensus       923 v~~~~fspdg~~l~~-~~d~~i~iwd~~--------~~~~~~~~~~~~h~~~i~~l~~s~----dg~~l~t~s~dg~v~v  989 (1082)
                      |..-.|......|++ +..++|.|++..        ....+..+..   ...|++|+-.+    +++-++..+....+..
T Consensus         1 VaiGkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNi---n~~italaaG~l~~~~~~D~LliGt~t~lla   77 (136)
T PF14781_consen    1 VAIGKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLNI---NQEITALAAGRLKPDDGRDCLLIGTQTSLLA   77 (136)
T ss_pred             CeEEEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEEC---CCceEEEEEEecCCCCCcCEEEEeccceEEE


Q ss_pred             EecCCceeeeeeCCCeecCCCCCCCCceeeEEEEeCCCCCeEEEEecCCcEEEEccCCCCCcc
Q 001415          990 FSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESEGKW 1052 (1082)
Q Consensus       990 wd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~~~~~~~d~~~l~s~~~dg~v~vW~~~~~~~~~ 1052 (1082)
                      ||+....-+..-.    .+.|     +..+.+.-......-++..+.++.|.-+|..-.|.-|
T Consensus        78 YDV~~N~d~Fyke----~~DG-----vn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e~fW  131 (136)
T PF14781_consen   78 YDVENNSDLFYKE----VPDG-----VNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNEIFW  131 (136)
T ss_pred             EEcccCchhhhhh----Cccc-----eeEEEEEecCCCCCcEEEECceEEEEEeCCCCcEEEE

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=80.30  E-value=5.9  Score=27.27  Aligned_cols=29  Identities=7%  Similarity=0.239  Sum_probs=24.1

Q ss_pred             cCCCeEEEEEcCCCcEEEEEccccceeee
Q 001415          368 PVQQTLLLVGTNVGDIGLWEVGSRERLVL  396 (1082)
Q Consensus       368 pdg~~llasgs~dg~i~iwd~~~~~~~~~  396 (1082)
                      |||++|+++...+++|.++|..+++.+.+
T Consensus         1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~   29 (42)
T TIGR02276         1 PDGTKLYVTNSGSNTVSVIDTATNKVIAT   29 (42)
T ss_pred             CCCCEEEEEeCCCCEEEEEECCCCeEEEE
Confidence            68888788777899999999988877664

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	1082
2xl2_A	334	Wdr5 In Complex With An Rbbp5 Peptide Recruited To		3e-10
2xl2_A	334	Wdr5 In Complex With An Rbbp5 Peptide Recruited To		1e-04
2gnq_A	336	Structure Of Wdr5 Length = 336		3e-10
2gnq_A	336	Structure Of Wdr5 Length = 336		1e-04
3emh_A	318	Structural Basis Of Wdr5-Mll Interaction Length = 3		5e-10
3emh_A	318	Structural Basis Of Wdr5-Mll Interaction Length = 3		7e-05
4a7j_A	318	Symmetric Dimethylation Of H3 Arginine 2 Is A Novel		7e-10
4a7j_A	318	Symmetric Dimethylation Of H3 Arginine 2 Is A Novel		1e-04
2h9m_A	313	Wdr5 In Complex With Unmodified H3k4 Peptide Length		8e-10
2h9m_A	313	Wdr5 In Complex With Unmodified H3k4 Peptide Length		1e-04
3smr_A	312	Crystal Structure Of Human Wd Repeat Domain 5 With		8e-10
3smr_A	312	Crystal Structure Of Human Wd Repeat Domain 5 With		1e-04
2h68_A	312	Histone H3 Recognition And Presentation By The Wdr5		8e-10
2h68_A	312	Histone H3 Recognition And Presentation By The Wdr5		1e-04
3psl_A	318	Fine-Tuning The Stimulation Of Mll1 Methyltransfera		8e-10
3psl_A	318	Fine-Tuning The Stimulation Of Mll1 Methyltransfera		1e-04
2g99_A	308	Structural Basis For The Specific Recognition Of Me		8e-10
2g99_A	308	Structural Basis For The Specific Recognition Of Me		1e-04
2g9a_A	311	Structural Basis For The Specific Recognition Of Me		8e-10
2g9a_A	311	Structural Basis For The Specific Recognition Of Me		9e-05
2h13_A	317	Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length		9e-10
2h13_A	317	Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length		1e-04
2h9l_A	329	Wdr5delta23 Length = 329		9e-10
2h9l_A	329	Wdr5delta23 Length = 329		1e-04
3mxx_A	315	Crystal Structure Of Wdr5 Mutant (S62a) Length = 31		1e-09
3mxx_A	315	Crystal Structure Of Wdr5 Mutant (S62a) Length = 31		1e-04
3n0d_A	315	Crystal Structure Of Wdr5 Mutant (W330f) Length = 3		1e-09
3n0d_A	315	Crystal Structure Of Wdr5 Mutant (W330f) Length = 3		1e-04
3n0e_A	315	Crystal Structure Of Wdr5 Mutant (W330y) Length = 3		2e-09
3n0e_A	315	Crystal Structure Of Wdr5 Mutant (W330y) Length = 3		1e-04
2co0_A	315	Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs		2e-09
2co0_A	315	Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs		4e-04
2cnx_A	315	Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.		2e-09
2cnx_A	315	Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.		2e-04
2ymu_A	577	Structure Of A Highly Repetitive Propeller Structur		7e-09
2ymu_A	577	Structure Of A Highly Repetitive Propeller Structur		7e-08
2yno_A	310	Yeast Betaprime Cop 1-304h6 Length = 310		4e-06
2ynn_A	304	Yeast Betaprime Cop 1-304 With Ktktn Motif Length =		4e-06
3mks_B	464	Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH		6e-06
2ynp_A	604	Yeast Betaprime Cop 1-604 With Ktktn Motif Length =		9e-06
1nex_B	464	Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Comp		1e-05
3mkq_A	814	Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subco		1e-05
1p22_A	435	Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex		7e-05
3shf_A	1256	Crystal Structure Of The R265s Mutant Of Full-Lengt		7e-05
2zkq_a	317	Structure Of A Mammalian Ribosomal 40s Subunit With		8e-05
3sfz_A	1249	Crystal Structure Of Full-Length Murine Apaf-1 Leng		8e-05
4aow_A	340	Crystal Structure Of The Human Rack1 Protein At A R		9e-05
3gfc_A	425	Crystal Structure Of Histone-Binding Protein Rbbp4		1e-04
3iza_B	1263	Structure Of An Apoptosome-Procaspase-9 Card Comple		1e-04
3dm0_A	694	Maltose Binding Protein Fusion With Rack1 From A. T		2e-04
2xyi_A	430	Crystal Structure Of Nurf55 In Complex With A H4 Pe		2e-04
3c99_A	432	Structural Basis Of Histone H4 Recognition By P55 L		2e-04
2yba_A	422	Crystal Structure Of Nurf55 In Complex With Histone		3e-04
2pm9_A	416	Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT O		4e-04
2xzm_R	343	Crystal Structure Of The Eukaryotic 40s Ribosomal S		5e-04
3cfs_B	414	Structural Basis Of The Interaction Of Rbap46RBAP48		5e-04
1vyh_C	410	Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410		6e-04
3jro_A	753	Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice		6e-04
3cfv_B	414	Structural Basis Of The Interaction Of Rbap46RBAP48		7e-04
2b4e_A	402	Crystal Structure Of Murine Coronin-1: Monoclinic F		8e-04

>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334

Iteration: 1
 Score = 64.7 bits (156), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 55/236 (23%), Positives = 108/236 (45%), Gaps = 30/236 (12%)
Query: 422 SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLC 481
           +V+ V +SP+G     + +  +++I+  + G   +    I  H  G++D+A+S  +  L 
Sbjct: 47  AVSSVKFSPNGEWLASSSADKLIKIWGAYDG---KFEKTISGHKLGISDVAWSSDSNLL- 102
Query: 482 VITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYD 541
            ++  DDKT+K+WD ++G      +GH   V+  C +       I S + D  ++ W   
Sbjct: 103 -VSASDDKTLKIWDVSSGKCLKTLKGHSNYVF--CCNFNPQSNLIVSGSFDESVRIW--- 156
Query: 542 NLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFW 601
                 D +  G+   T+   +D            +  V F+   +  +++  D   + W
Sbjct: 157 ------DVKT-GKCLKTLPAHSD-----------PVSAVHFNRDGSLIVSSSYDGLCRIW 198
Query: 602 DMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTF 657
           D  S Q L ++  D   P S  ++F+ +G  +  +T DN +K+   S G + L+T+
Sbjct: 199 DTASGQCLKTLIDDDNPPVS-FVKFSPNGKYILAATLDNTLKLWDYSKG-KCLKTY 252

>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334

Iteration: 1
 Score = 46.2 bits (108), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 37/155 (23%), Positives = 72/155 (46%), Gaps = 20/155 (12%)
Query: 839 DNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS 898
           D+N++    DD +++I++V   +    LKGHS  +    F+   N++VS   D  + +W 
Sbjct: 98  DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW- 156
Query: 899 SDGWEKQKNRFLQIPTG---RTPTAQSDTRVQFHQDQIHFLVV---HETQLAIFETTKLE 952
                        + TG   +T  A SD     H ++   L+V   ++    I++T   +
Sbjct: 157 ------------DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 204
Query: 953 CVKQWVPRESSAPITHATFSCDSQLVYACFLDATV 987
           C+K  +  + + P++   FS + + + A  LD T+
Sbjct: 205 CLKTLI-DDDNPPVSFVKFSPNGKYILAATLDNTL 238

>pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336

Iteration: 1
 Score = 64.3 bits (155), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 55/236 (23%), Positives = 108/236 (45%), Gaps = 30/236 (12%)
Query: 422 SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLC 481
           +V+ V +SP+G     + +  +++I+  + G   +    I  H  G++D+A+S  +  L 
Sbjct: 49  AVSSVKFSPNGEWLASSSADKLIKIWGAYDG---KFEKTISGHKLGISDVAWSSDSNLL- 104
Query: 482 VITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYD 541
            ++  DDKT+K+WD ++G      +GH   V+  C +       I S + D  ++ W   
Sbjct: 105 -VSASDDKTLKIWDVSSGKCLKTLKGHSNYVF--CCNFNPQSNLIVSGSFDESVRIW--- 158
Query: 542 NLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFW 601
                 D +  G+   T+   +D            +  V F+   +  +++  D   + W
Sbjct: 159 ------DVKT-GKCLKTLPAHSD-----------PVSAVHFNRDGSLIVSSSYDGLCRIW 200
Query: 602 DMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTF 657
           D  S Q L ++  D   P S  ++F+ +G  +  +T DN +K+   S G + L+T+
Sbjct: 201 DTASGQCLKTLIDDDNPPVS-FVKFSPNGKYILAATLDNTLKLWDYSKG-KCLKTY 254

>pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336

Iteration: 1
 Score = 46.2 bits (108), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 37/155 (23%), Positives = 72/155 (46%), Gaps = 20/155 (12%)
Query: 839 DNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS 898
           D+N++    DD +++I++V   +    LKGHS  +    F+   N++VS   D  + +W 
Sbjct: 100 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW- 158
Query: 899 SDGWEKQKNRFLQIPTG---RTPTAQSDTRVQFHQDQIHFLVV---HETQLAIFETTKLE 952
                        + TG   +T  A SD     H ++   L+V   ++    I++T   +
Sbjct: 159 ------------DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 206
Query: 953 CVKQWVPRESSAPITHATFSCDSQLVYACFLDATV 987
           C+K  +  + + P++   FS + + + A  LD T+
Sbjct: 207 CLKTLI-DDDNPPVSFVKFSPNGKYILAATLDNTL 240

>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318

Iteration: 1
 Score = 63.9 bits (154), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 55/236 (23%), Positives = 108/236 (45%), Gaps = 30/236 (12%)
Query: 422 SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLC 481
           +V+ V +SP+G     + +  +++I+  + G   +    I  H  G++D+A+S  +  L 
Sbjct: 31  AVSSVKFSPNGEWLASSSADKLIKIWGAYDG---KFEKTISGHKLGISDVAWSSDSNLL- 86
Query: 482 VITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYD 541
            ++  DDKT+K+WD ++G      +GH   V+  C +       I S + D  ++ W   
Sbjct: 87  -VSASDDKTLKIWDVSSGKCLKTLKGHSNYVF--CCNFNPQSNLIVSGSFDESVRIW--- 140
Query: 542 NLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFW 601
                 D +  G+   T+   +D            +  V F+   +  +++  D   + W
Sbjct: 141 ------DVKT-GKCLKTLPAHSD-----------PVSAVHFNRDGSLIVSSSYDGLCRIW 182
Query: 602 DMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTF 657
           D  S Q L ++  D   P S  ++F+ +G  +  +T DN +K+   S G + L+T+
Sbjct: 183 DTASGQCLKTLIDDDNPPVS-FVKFSPNGKYILAATLDNTLKLWDYSKG-KCLKTY 236

>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318

Iteration: 1
 Score = 46.6 bits (109), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 37/155 (23%), Positives = 72/155 (46%), Gaps = 20/155 (12%)
Query: 839 DNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS 898
           D+N++    DD +++I++V   +    LKGHS  +    F+   N++VS   D  + +W 
Sbjct: 82  DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW- 140
Query: 899 SDGWEKQKNRFLQIPTG---RTPTAQSDTRVQFHQDQIHFLVV---HETQLAIFETTKLE 952
                        + TG   +T  A SD     H ++   L+V   ++    I++T   +
Sbjct: 141 ------------DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 188
Query: 953 CVKQWVPRESSAPITHATFSCDSQLVYACFLDATV 987
           C+K  +  + + P++   FS + + + A  LD T+
Sbjct: 189 CLKTLI-DDDNPPVSFVKFSPNGKYILAATLDNTL 222

>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318

Iteration: 1
 Score = 63.5 bits (153), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 55/236 (23%), Positives = 108/236 (45%), Gaps = 30/236 (12%)
Query: 422 SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLC 481
           +V+ V +SP+G     + +  +++I+  + G   +    I  H  G++D+A+S  +  L 
Sbjct: 31  AVSSVKFSPNGEWLASSSADKLIKIWGAYDG---KFEKTISGHKLGISDVAWSSDSNLL- 86
Query: 482 VITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYD 541
            ++  DDKT+K+WD ++G      +GH   V+  C +       I S + D  ++ W   
Sbjct: 87  -VSASDDKTLKIWDVSSGKCLKTLKGHSNYVF--CCNFNPQSNLIVSGSFDESVRIW--- 140
Query: 542 NLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFW 601
                 D +  G+   T+   +D            +  V F+   +  +++  D   + W
Sbjct: 141 ------DVKT-GKCLKTLPAHSD-----------PVSAVHFNRDGSLIVSSSYDGLCRIW 182
Query: 602 DMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTF 657
           D  S Q L ++  D   P S  ++F+ +G  +  +T DN +K+   S G + L+T+
Sbjct: 183 DTASGQCLKTLIDDDNPPVS-FVKFSPNGKYILAATLDNTLKLWDYSKG-KCLKTY 236

>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318

Iteration: 1
 Score = 46.2 bits (108), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 37/155 (23%), Positives = 72/155 (46%), Gaps = 20/155 (12%)
Query: 839 DNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS 898
           D+N++    DD +++I++V   +    LKGHS  +    F+   N++VS   D  + +W 
Sbjct: 82  DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW- 140
Query: 899 SDGWEKQKNRFLQIPTG---RTPTAQSDTRVQFHQDQIHFLVV---HETQLAIFETTKLE 952
                        + TG   +T  A SD     H ++   L+V   ++    I++T   +
Sbjct: 141 ------------DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 188
Query: 953 CVKQWVPRESSAPITHATFSCDSQLVYACFLDATV 987
           C+K  +  + + P++   FS + + + A  LD T+
Sbjct: 189 CLKTLI-DDDNPPVSFVKFSPNGKYILAATLDNTL 222

>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313

Iteration: 1
 Score = 63.2 bits (152), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 55/236 (23%), Positives = 108/236 (45%), Gaps = 30/236 (12%)
Query: 422 SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLC 481
           +V+ V +SP+G     + +  +++I+  + G   +    I  H  G++D+A+S  +  L 
Sbjct: 26  AVSSVKFSPNGEWLASSSADKLIKIWGAYDG---KFEKTISGHKLGISDVAWSSDSNLL- 81
Query: 482 VITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYD 541
            ++  DDKT+K+WD ++G      +GH   V+  C +       I S + D  ++ W   
Sbjct: 82  -VSASDDKTLKIWDVSSGKCLKTLKGHSNYVF--CCNFNPQSNLIVSGSFDESVRIW--- 135
Query: 542 NLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFW 601
                 D +  G+   T+   +D            +  V F+   +  +++  D   + W
Sbjct: 136 ------DVKT-GKCLKTLPAHSD-----------PVSAVHFNRDGSLIVSSSYDGLCRIW 177
Query: 602 DMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTF 657
           D  S Q L ++  D   P S  ++F+ +G  +  +T DN +K+   S G + L+T+
Sbjct: 178 DTASGQCLKTLIDDDNPPVS-FVKFSPNGKYILAATLDNTLKLWDYSKG-KCLKTY 231

>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313

Iteration: 1
 Score = 45.8 bits (107), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 37/155 (23%), Positives = 72/155 (46%), Gaps = 20/155 (12%)
Query: 839 DNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS 898
           D+N++    DD +++I++V   +    LKGHS  +    F+   N++VS   D  + +W 
Sbjct: 77  DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW- 135
Query: 899 SDGWEKQKNRFLQIPTG---RTPTAQSDTRVQFHQDQIHFLVV---HETQLAIFETTKLE 952
                        + TG   +T  A SD     H ++   L+V   ++    I++T   +
Sbjct: 136 ------------DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 183
Query: 953 CVKQWVPRESSAPITHATFSCDSQLVYACFLDATV 987
           C+K  +  + + P++   FS + + + A  LD T+
Sbjct: 184 CLKTLI-DDDNPPVSFVKFSPNGKYILAATLDNTL 217

>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312

Iteration: 1
 Score = 63.2 bits (152), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 55/236 (23%), Positives = 108/236 (45%), Gaps = 30/236 (12%)
Query: 422 SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLC 481
           +V+ V +SP+G     + +  +++I+  + G   +    I  H  G++D+A+S  +  L 
Sbjct: 25  AVSSVKFSPNGEWLASSSADKLIKIWGAYDG---KFEKTISGHKLGISDVAWSSDSNLL- 80
Query: 482 VITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYD 541
            ++  DDKT+K+WD ++G      +GH   V+  C +       I S + D  ++ W   
Sbjct: 81  -VSASDDKTLKIWDVSSGKCLKTLKGHSNYVF--CCNFNPQSNLIVSGSFDESVRIW--- 134
Query: 542 NLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFW 601
                 D +  G+   T+   +D            +  V F+   +  +++  D   + W
Sbjct: 135 ------DVKT-GKCLKTLPAHSD-----------PVSAVHFNRDGSLIVSSSYDGLCRIW 176
Query: 602 DMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTF 657
           D  S Q L ++  D   P S  ++F+ +G  +  +T DN +K+   S G + L+T+
Sbjct: 177 DTASGQCLKTLIDDDNPPVS-FVKFSPNGKYILAATLDNTLKLWDYSKG-KCLKTY 230

>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312

Iteration: 1
 Score = 45.8 bits (107), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 37/155 (23%), Positives = 72/155 (46%), Gaps = 20/155 (12%)
Query: 839 DNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS 898
           D+N++    DD +++I++V   +    LKGHS  +    F+   N++VS   D  + +W 
Sbjct: 76  DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW- 134
Query: 899 SDGWEKQKNRFLQIPTG---RTPTAQSDTRVQFHQDQIHFLVV---HETQLAIFETTKLE 952
                        + TG   +T  A SD     H ++   L+V   ++    I++T   +
Sbjct: 135 ------------DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 182
Query: 953 CVKQWVPRESSAPITHATFSCDSQLVYACFLDATV 987
           C+K  +  + + P++   FS + + + A  LD T+
Sbjct: 183 CLKTLI-DDDNPPVSFVKFSPNGKYILAATLDNTL 216

>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312

Iteration: 1
 Score = 63.2 bits (152), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 55/236 (23%), Positives = 108/236 (45%), Gaps = 30/236 (12%)
Query: 422 SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLC 481
           +V+ V +SP+G     + +  +++I+  + G   +    I  H  G++D+A+S  +  L 
Sbjct: 25  AVSSVKFSPNGEWLASSSADKLIKIWGAYDG---KFEKTISGHKLGISDVAWSSDSNLL- 80
Query: 482 VITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYD 541
            ++  DDKT+K+WD ++G      +GH   V+  C +       I S + D  ++ W   
Sbjct: 81  -VSASDDKTLKIWDVSSGKCLKTLKGHSNYVF--CCNFNPQSNLIVSGSFDESVRIW--- 134
Query: 542 NLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFW 601
                 D +  G+   T+   +D            +  V F+   +  +++  D   + W
Sbjct: 135 ------DVKT-GKCLKTLPAHSD-----------PVSAVHFNRDGSLIVSSSYDGLCRIW 176
Query: 602 DMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTF 657
           D  S Q L ++  D   P S  ++F+ +G  +  +T DN +K+   S G + L+T+
Sbjct: 177 DTASGQCLKTLIDDDNPPVS-FVKFSPNGKYILAATLDNTLKLWDYSKG-KCLKTY 230

>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312

Iteration: 1
 Score = 45.8 bits (107), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 37/155 (23%), Positives = 72/155 (46%), Gaps = 20/155 (12%)
Query: 839 DNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS 898
           D+N++    DD +++I++V   +    LKGHS  +    F+   N++VS   D  + +W 
Sbjct: 76  DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW- 134
Query: 899 SDGWEKQKNRFLQIPTG---RTPTAQSDTRVQFHQDQIHFLVV---HETQLAIFETTKLE 952
                        + TG   +T  A SD     H ++   L+V   ++    I++T   +
Sbjct: 135 ------------DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 182
Query: 953 CVKQWVPRESSAPITHATFSCDSQLVYACFLDATV 987
           C+K  +  + + P++   FS + + + A  LD T+
Sbjct: 183 CLKTLI-DDDNPPVSFVKFSPNGKYILAATLDNTL 216

>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318

Iteration: 1
 Score = 63.2 bits (152), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 55/236 (23%), Positives = 108/236 (45%), Gaps = 30/236 (12%)
Query: 422 SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLC 481
           +V+ V +SP+G     + +  +++I+  + G   +    I  H  G++D+A+S  +  L 
Sbjct: 31  AVSSVKFSPNGEWLASSSADKLIKIWGAYDG---KFEKTISGHKLGISDVAWSSDSNLL- 86
Query: 482 VITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYD 541
            ++  DDKT+K+WD ++G      +GH   V+  C +       I S + D  ++ W   
Sbjct: 87  -VSASDDKTLKIWDVSSGKCLKTLKGHSNYVF--CCNFNPQSNLIVSGSFDESVRIW--- 140
Query: 542 NLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFW 601
                 D +  G+   T+   +D            +  V F+   +  +++  D   + W
Sbjct: 141 ------DVKT-GKCLKTLPAHSD-----------PVSAVHFNRDGSLIVSSSYDGLCRIW 182
Query: 602 DMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTF 657
           D  S Q L ++  D   P S  ++F+ +G  +  +T DN +K+   S G + L+T+
Sbjct: 183 DTASGQCLKTLIDDDNPPVS-FVKFSPNGKYILAATLDNTLKLWDYSKG-KCLKTY 236

>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318

Iteration: 1
 Score = 45.8 bits (107), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 37/155 (23%), Positives = 72/155 (46%), Gaps = 20/155 (12%)
Query: 839 DNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS 898
           D+N++    DD +++I++V   +    LKGHS  +    F+   N++VS   D  + +W 
Sbjct: 82  DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW- 140
Query: 899 SDGWEKQKNRFLQIPTG---RTPTAQSDTRVQFHQDQIHFLVV---HETQLAIFETTKLE 952
                        + TG   +T  A SD     H ++   L+V   ++    I++T   +
Sbjct: 141 ------------DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 188
Query: 953 CVKQWVPRESSAPITHATFSCDSQLVYACFLDATV 987
           C+K  +  + + P++   FS + + + A  LD T+
Sbjct: 189 CLKTLI-DDDNPPVSFVKFSPNGKYILAATLDNTL 222

>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308

Iteration: 1
 Score = 63.2 bits (152), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 55/236 (23%), Positives = 108/236 (45%), Gaps = 30/236 (12%)
Query: 422 SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLC 481
           +V+ V +SP+G     + +  +++I+  + G   +    I  H  G++D+A+S  +  L 
Sbjct: 21  AVSSVKFSPNGEWLASSSADKLIKIWGAYDG---KFEKTISGHKLGISDVAWSSDSNLL- 76
Query: 482 VITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYD 541
            ++  DDKT+K+WD ++G      +GH   V+  C +       I S + D  ++ W   
Sbjct: 77  -VSASDDKTLKIWDVSSGKCLKTLKGHSNYVF--CCNFNPQSNLIVSGSFDESVRIW--- 130
Query: 542 NLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFW 601
                 D +  G+   T+   +D            +  V F+   +  +++  D   + W
Sbjct: 131 ------DVKT-GKCLKTLPAHSD-----------PVSAVHFNRDGSLIVSSSYDGLCRIW 172
Query: 602 DMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTF 657
           D  S Q L ++  D   P S  ++F+ +G  +  +T DN +K+   S G + L+T+
Sbjct: 173 DTASGQCLKTLIDDDNPPVS-FVKFSPNGKYILAATLDNTLKLWDYSKG-KCLKTY 226

>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308

Iteration: 1
 Score = 45.8 bits (107), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 37/156 (23%), Positives = 72/156 (46%), Gaps = 20/156 (12%)
Query: 838 QDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVW 897
            D+N++    DD +++I++V   +    LKGHS  +    F+   N++VS   D  + +W
Sbjct: 71  SDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 130
Query: 898 SSDGWEKQKNRFLQIPTG---RTPTAQSDTRVQFHQDQIHFLVV---HETQLAIFETTKL 951
                         + TG   +T  A SD     H ++   L+V   ++    I++T   
Sbjct: 131 -------------DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG 177
Query: 952 ECVKQWVPRESSAPITHATFSCDSQLVYACFLDATV 987
           +C+K  +  + + P++   FS + + + A  LD T+
Sbjct: 178 QCLKTLI-DDDNPPVSFVKFSPNGKYILAATLDNTL 212

>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311

Iteration: 1
 Score = 63.2 bits (152), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 55/236 (23%), Positives = 108/236 (45%), Gaps = 30/236 (12%)
Query: 422 SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLC 481
           +V+ V +SP+G     + +  +++I+  + G   +    I  H  G++D+A+S  +  L 
Sbjct: 24  AVSSVKFSPNGEWLASSSADKLIKIWGAYDG---KFEKTISGHKLGISDVAWSSDSNLL- 79
Query: 482 VITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYD 541
            ++  DDKT+K+WD ++G      +GH   V+  C +       I S + D  ++ W   
Sbjct: 80  -VSASDDKTLKIWDVSSGKCLKTLKGHSNYVF--CCNFNPQSNLIVSGSFDESVRIW--- 133
Query: 542 NLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFW 601
                 D +  G+   T+   +D            +  V F+   +  +++  D   + W
Sbjct: 134 ------DVKT-GKCLKTLPAHSD-----------PVSAVHFNRDGSLIVSSSYDGLCRIW 175
Query: 602 DMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTF 657
           D  S Q L ++  D   P S  ++F+ +G  +  +T DN +K+   S G + L+T+
Sbjct: 176 DTASGQCLKTLIDDDNPPVS-FVKFSPNGKYILAATLDNTLKLWDYSKG-KCLKTY 229

>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311

Iteration: 1
 Score = 46.2 bits (108), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 37/156 (23%), Positives = 72/156 (46%), Gaps = 20/156 (12%)
Query: 838 QDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVW 897
            D+N++    DD +++I++V   +    LKGHS  +    F+   N++VS   D  + +W
Sbjct: 74  SDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 133
Query: 898 SSDGWEKQKNRFLQIPTG---RTPTAQSDTRVQFHQDQIHFLVV---HETQLAIFETTKL 951
                         + TG   +T  A SD     H ++   L+V   ++    I++T   
Sbjct: 134 -------------DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG 180
Query: 952 ECVKQWVPRESSAPITHATFSCDSQLVYACFLDATV 987
           +C+K  +  + + P++   FS + + + A  LD T+
Sbjct: 181 QCLKTLI-DDDNPPVSFVKFSPNGKYILAATLDNTL 215

>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317

Iteration: 1
 Score = 63.2 bits (152), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 55/236 (23%), Positives = 108/236 (45%), Gaps = 30/236 (12%)
Query: 422 SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLC 481
           +V+ V +SP+G     + +  +++I+  + G   +    I  H  G++D+A+S  +  L 
Sbjct: 30  AVSSVKFSPNGEWLASSSADKLIKIWGAYDG---KFEKTISGHKLGISDVAWSSDSNLL- 85
Query: 482 VITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYD 541
            ++  DDKT+K+WD ++G      +GH   V+  C +       I S + D  ++ W   
Sbjct: 86  -VSASDDKTLKIWDVSSGKCLKTLKGHSNYVF--CCNFNPQSNLIVSGSFDESVRIW--- 139
Query: 542 NLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFW 601
                 D +  G+   T+   +D            +  V F+   +  +++  D   + W
Sbjct: 140 ------DVKT-GKCLKTLPAHSD-----------PVSAVHFNRDGSLIVSSSYDGLCRIW 181
Query: 602 DMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTF 657
           D  S Q L ++  D   P S  ++F+ +G  +  +T DN +K+   S G + L+T+
Sbjct: 182 DTASGQCLKTLIDDDNPPVS-FVKFSPNGKYILAATLDNTLKLWDYSKG-KCLKTY 235

>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317

Iteration: 1
 Score = 45.8 bits (107), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 37/155 (23%), Positives = 72/155 (46%), Gaps = 20/155 (12%)
Query: 839 DNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS 898
           D+N++    DD +++I++V   +    LKGHS  +    F+   N++VS   D  + +W 
Sbjct: 81  DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW- 139
Query: 899 SDGWEKQKNRFLQIPTG---RTPTAQSDTRVQFHQDQIHFLVV---HETQLAIFETTKLE 952
                        + TG   +T  A SD     H ++   L+V   ++    I++T   +
Sbjct: 140 ------------DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 187
Query: 953 CVKQWVPRESSAPITHATFSCDSQLVYACFLDATV 987
           C+K  +  + + P++   FS + + + A  LD T+
Sbjct: 188 CLKTLI-DDDNPPVSFVKFSPNGKYILAATLDNTL 221

>pdb|2H9L|A Chain A, Wdr5delta23 Length = 329

Iteration: 1
 Score = 62.8 bits (151), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 55/236 (23%), Positives = 108/236 (45%), Gaps = 30/236 (12%)
Query: 422 SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLC 481
           +V+ V +SP+G     + +  +++I+  + G   +    I  H  G++D+A+S  +  L 
Sbjct: 42  AVSSVKFSPNGEWLASSSADKLIKIWGAYDG---KFEKTISGHKLGISDVAWSSDSNLL- 97
Query: 482 VITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYD 541
            ++  DDKT+K+WD ++G      +GH   V+  C +       I S + D  ++ W   
Sbjct: 98  -VSASDDKTLKIWDVSSGKCLKTLKGHSNYVF--CCNFNPQSNLIVSGSFDESVRIW--- 151
Query: 542 NLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFW 601
                 D +  G+   T+   +D            +  V F+   +  +++  D   + W
Sbjct: 152 ------DVKT-GKCLKTLPAHSD-----------PVSAVHFNRDGSLIVSSSYDGLCRIW 193
Query: 602 DMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTF 657
           D  S Q L ++  D   P S  ++F+ +G  +  +T DN +K+   S G + L+T+
Sbjct: 194 DTASGQCLKTLIDDDNPPVS-FVKFSPNGKYILAATLDNTLKLWDYSKG-KCLKTY 247

>pdb|2H9L|A Chain A, Wdr5delta23 Length = 329

Iteration: 1
 Score = 45.8 bits (107), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 37/155 (23%), Positives = 72/155 (46%), Gaps = 20/155 (12%)
Query: 839 DNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS 898
           D+N++    DD +++I++V   +    LKGHS  +    F+   N++VS   D  + +W 
Sbjct: 93  DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW- 151
Query: 899 SDGWEKQKNRFLQIPTG---RTPTAQSDTRVQFHQDQIHFLVV---HETQLAIFETTKLE 952
                        + TG   +T  A SD     H ++   L+V   ++    I++T   +
Sbjct: 152 ------------DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 199
Query: 953 CVKQWVPRESSAPITHATFSCDSQLVYACFLDATV 987
           C+K  +  + + P++   FS + + + A  LD T+
Sbjct: 200 CLKTLID-DDNPPVSFVKFSPNGKYILAATLDNTL 233

>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315

Iteration: 1
 Score = 62.8 bits (151), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 55/236 (23%), Positives = 108/236 (45%), Gaps = 30/236 (12%)
Query: 422 SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLC 481
           +V+ V +SP+G     + +  +++I+  + G   +    I  H  G++D+A+S  +  L 
Sbjct: 28  AVSSVKFSPNGEWLAASSADKLIKIWGAYDG---KFEKTISGHKLGISDVAWSSDSNLL- 83
Query: 482 VITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYD 541
            ++  DDKT+K+WD ++G      +GH   V+  C +       I S + D  ++ W   
Sbjct: 84  -VSASDDKTLKIWDVSSGKCLKTLKGHSNYVF--CCNFNPQSNLIVSGSFDESVRIW--- 137
Query: 542 NLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFW 601
                 D +  G+   T+   +D            +  V F+   +  +++  D   + W
Sbjct: 138 ------DVKT-GKCLKTLPAHSD-----------PVSAVHFNRDGSLIVSSSYDGLCRIW 179
Query: 602 DMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTF 657
           D  S Q L ++  D   P S  ++F+ +G  +  +T DN +K+   S G + L+T+
Sbjct: 180 DTASGQCLKTLIDDDNPPVS-FVKFSPNGKYILAATLDNTLKLWDYSKG-KCLKTY 233

>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315

Iteration: 1
 Score = 45.8 bits (107), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 37/155 (23%), Positives = 72/155 (46%), Gaps = 20/155 (12%)
Query: 839 DNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS 898
           D+N++    DD +++I++V   +    LKGHS  +    F+   N++VS   D  + +W 
Sbjct: 79  DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW- 137
Query: 899 SDGWEKQKNRFLQIPTG---RTPTAQSDTRVQFHQDQIHFLVV---HETQLAIFETTKLE 952
                        + TG   +T  A SD     H ++   L+V   ++    I++T   +
Sbjct: 138 ------------DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 185
Query: 953 CVKQWVPRESSAPITHATFSCDSQLVYACFLDATV 987
           C+K  +  + + P++   FS + + + A  LD T+
Sbjct: 186 CLKTLID-DDNPPVSFVKFSPNGKYILAATLDNTL 219

>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315

Iteration: 1
 Score = 62.4 bits (150), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 55/236 (23%), Positives = 108/236 (45%), Gaps = 30/236 (12%)
Query: 422 SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLC 481
           +V+ V +SP+G     + +  +++I+  + G   +    I  H  G++D+A+S  +  L 
Sbjct: 28  AVSSVKFSPNGEWLASSSADKLIKIWGAYDG---KFEKTISGHKLGISDVAWSSDSNLL- 83
Query: 482 VITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYD 541
            ++  DDKT+K+WD ++G      +GH   V+  C +       I S + D  ++ W   
Sbjct: 84  -VSASDDKTLKIWDVSSGKCLKTLKGHSNYVF--CCNFNPQSNLIVSGSFDESVRIW--- 137
Query: 542 NLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFW 601
                 D +  G+   T+   +D            +  V F+   +  +++  D   + W
Sbjct: 138 ------DVKT-GKCLKTLPAHSD-----------PVSAVHFNRDGSLIVSSSYDGLCRIW 179
Query: 602 DMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTF 657
           D  S Q L ++  D   P S  ++F+ +G  +  +T DN +K+   S G + L+T+
Sbjct: 180 DTASGQCLKTLIDDDNPPVS-FVKFSPNGKYILAATLDNTLKLWDYSKG-KCLKTY 233

>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315

Iteration: 1
 Score = 45.8 bits (107), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 37/155 (23%), Positives = 72/155 (46%), Gaps = 20/155 (12%)
Query: 839 DNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS 898
           D+N++    DD +++I++V   +    LKGHS  +    F+   N++VS   D  + +W 
Sbjct: 79  DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW- 137
Query: 899 SDGWEKQKNRFLQIPTG---RTPTAQSDTRVQFHQDQIHFLVV---HETQLAIFETTKLE 952
                        + TG   +T  A SD     H ++   L+V   ++    I++T   +
Sbjct: 138 ------------DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 185
Query: 953 CVKQWVPRESSAPITHATFSCDSQLVYACFLDATV 987
           C+K  +  + + P++   FS + + + A  LD T+
Sbjct: 186 CLKTLID-DDNPPVSFVKFSPNGKYILAATLDNTL 219

>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315

Iteration: 1
 Score = 62.0 bits (149), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 55/236 (23%), Positives = 108/236 (45%), Gaps = 30/236 (12%)
Query: 422 SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLC 481
           +V+ V +SP+G     + +  +++I+  + G   +    I  H  G++D+A+S  +  L 
Sbjct: 28  AVSSVKFSPNGEWLASSSADKLIKIWGAYDG---KFEKTISGHKLGISDVAWSSDSNLL- 83
Query: 482 VITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYD 541
            ++  DDKT+K+WD ++G      +GH   V+  C +       I S + D  ++ W   
Sbjct: 84  -VSASDDKTLKIWDVSSGKCLKTLKGHSNYVF--CCNFNPQSNLIVSGSFDESVRIW--- 137
Query: 542 NLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFW 601
                 D +  G+   T+   +D            +  V F+   +  +++  D   + W
Sbjct: 138 ------DVKT-GKCLKTLPAHSD-----------PVSAVHFNRDGSLIVSSSYDGLCRIW 179
Query: 602 DMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTF 657
           D  S Q L ++  D   P S  ++F+ +G  +  +T DN +K+   S G + L+T+
Sbjct: 180 DTASGQCLKTLIDDDNPPVS-FVKFSPNGKYILAATLDNTLKLWDYSKG-KCLKTY 233

>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315

Iteration: 1
 Score = 45.8 bits (107), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 37/155 (23%), Positives = 72/155 (46%), Gaps = 20/155 (12%)
Query: 839 DNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS 898
           D+N++    DD +++I++V   +    LKGHS  +    F+   N++VS   D  + +W 
Sbjct: 79  DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW- 137
Query: 899 SDGWEKQKNRFLQIPTG---RTPTAQSDTRVQFHQDQIHFLVV---HETQLAIFETTKLE 952
                        + TG   +T  A SD     H ++   L+V   ++    I++T   +
Sbjct: 138 ------------DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 185
Query: 953 CVKQWVPRESSAPITHATFSCDSQLVYACFLDATV 987
           C+K  +  + + P++   FS + + + A  LD T+
Sbjct: 186 CLKTLID-DDNPPVSFVKFSPNGKYILAATLDNTL 219

>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315

Iteration: 1
 Score = 62.0 bits (149), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 55/236 (23%), Positives = 107/236 (45%), Gaps = 30/236 (12%)
Query: 422 SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLC 481
           +V+ V +SP+G     + +  +++I+  + G   +    I  H  G++D+A+S  +  L 
Sbjct: 28  AVSSVKFSPNGEWLASSSADKLIKIWGAYDG---KFEKTISGHKLGISDVAWSSDSNLL- 83
Query: 482 VITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYD 541
            ++  DDKT+K+WD ++G      +GH   V+  C +       I S + D  ++ W   
Sbjct: 84  -VSASDDKTLKIWDVSSGKCLKTLKGHSNYVF--CCNFNPQSNLIVSGSFDESVRIW--- 137
Query: 542 NLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFW 601
                 D +  G    T+   +D            +  V F+   +  +++  D   + W
Sbjct: 138 ------DVKT-GMCLKTLPAHSD-----------PVSAVHFNRDGSLIVSSSYDGLCRIW 179
Query: 602 DMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTF 657
           D  S Q L ++  D   P S  ++F+ +G  +  +T DN +K+   S G + L+T+
Sbjct: 180 DTASGQCLKTLIDDDNPPVS-FVKFSPNGKYILAATLDNDLKLWDYSKG-KCLKTY 233

>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315

Iteration: 1
 Score = 44.3 bits (103), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 36/152 (23%), Positives = 70/152 (46%), Gaps = 20/152 (13%)
Query: 839 DNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS 898
           D+N++    DD +++I++V   +    LKGHS  +    F+   N++VS   D  + +W 
Sbjct: 79  DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW- 137
Query: 899 SDGWEKQKNRFLQIPTG---RTPTAQSDTRVQFHQDQIHFLVV---HETQLAIFETTKLE 952
                        + TG   +T  A SD     H ++   L+V   ++    I++T   +
Sbjct: 138 ------------DVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 185
Query: 953 CVKQWVPRESSAPITHATFSCDSQLVYACFLD 984
           C+K  +  + + P++   FS + + + A  LD
Sbjct: 186 CLKTLI-DDDNPPVSFVKFSPNGKYILAATLD 216

>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315

Iteration: 1
 Score = 61.6 bits (148), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 55/236 (23%), Positives = 107/236 (45%), Gaps = 30/236 (12%)
Query: 422 SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLC 481
           +V+ V +SP+G     + +  +++I+  + G   +    I  H  G++D+A+S  +  L 
Sbjct: 28  AVSSVKFSPNGEWLASSSADKLIKIWGAYDG---KFEKTISGHKLGISDVAWSSDSNLL- 83
Query: 482 VITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYD 541
            ++  DDKT+K+WD ++G      +GH   V+  C +       I S + D  ++ W   
Sbjct: 84  -VSASDDKTLKIWDVSSGKCLKTLKGHSNYVF--CCNFNPQSNLIVSGSFDESVRIW--- 137
Query: 542 NLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFW 601
                 D +  G    T+   +D            +  V F+   +  +++  D   + W
Sbjct: 138 ------DVKT-GMCLKTLPAHSD-----------PVSAVHFNRDGSLIVSSSYDGLCRIW 179
Query: 602 DMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTF 657
           D  S Q L ++  D   P S  ++F+ +G  +  +T DN +K+   S G + L+T+
Sbjct: 180 DTASGQCLKTLIDDDNPPVS-FVKFSPNGKYILAATLDNTLKLWDYSKG-KCLKTY 233

>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315

Iteration: 1
 Score = 45.4 bits (106), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 37/155 (23%), Positives = 72/155 (46%), Gaps = 20/155 (12%)
Query: 839 DNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS 898
           D+N++    DD +++I++V   +    LKGHS  +    F+   N++VS   D  + +W 
Sbjct: 79  DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW- 137
Query: 899 SDGWEKQKNRFLQIPTG---RTPTAQSDTRVQFHQDQIHFLVV---HETQLAIFETTKLE 952
                        + TG   +T  A SD     H ++   L+V   ++    I++T   +
Sbjct: 138 ------------DVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 185
Query: 953 CVKQWVPRESSAPITHATFSCDSQLVYACFLDATV 987
           C+K  +  + + P++   FS + + + A  LD T+
Sbjct: 186 CLKTLI-DDDNPPVSFVKFSPNGKYILAATLDNTL 219

>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577

Iteration: 1
 Score = 60.1 bits (144), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 120/525 (22%), Positives = 210/525 (40%), Gaps = 100/525 (19%)
Query: 422 SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLC 481
           SV  V +SPDG     A     V++++ +G  ++ Q L    H   V  +AFS P+ Q  
Sbjct: 100 SVRGVAFSPDGQTIASASDDKTVKLWNRNG--QLLQTLT--GHSSSVWGVAFS-PDGQ-T 153
Query: 482 VITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYD 541
           + +  DDKT+K+W+  NG       GH + V+ V      + Q I S + D  +K W  +
Sbjct: 154 IASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVA--FSPDGQTIASASDDKTVKLWNRN 210
Query: 542 N--LGSRVDYEAPGRWCTTMAYSADGT---------------------RTYQGFRKRSLG 578
              L +   + +  R    +A+S DG                      +T  G    S+ 
Sbjct: 211 GQLLQTLTGHSSSVR---GVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTG-HSSSVN 266
Query: 579 VVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTN 638
            V F        +A DD ++K W+ +  QLL ++   G   +   + F+ DG  +A +++
Sbjct: 267 GVAFRPDGQTIASASDDKTVKLWNRNG-QLLQTL--TGHSSSVWGVAFSPDGQTIASASD 323
Query: 639 DNGIKILATSDGIRLLRTFENLAYDASRTSENSKNGDVRSLADVKPRITEESNDKS-KVW 697
           D  +K+       R  +  + L   +S     + + D +++A         S+DK+ K+W
Sbjct: 324 DKTVKLWN-----RNGQHLQTLTGHSSSVWGVAFSPDGQTIA-------SASDDKTVKLW 371
Query: 698 KLTELSEPNQCRSLRLPENL--RATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNS 755
                      R+ +L + L   ++ +  + F+  G  I + + +    LW      RN 
Sbjct: 372 N----------RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLW-----NRNG 416
Query: 756 SGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGK-ISLFNX 814
                     QL Q  +G              +V   A S +D  + SAS  K + L+N 
Sbjct: 417 ----------QLLQTLTG-----------HSSSVWGVAFSPDDQTIASASDDKTVKLWN- 454
Query: 815 XXXXXXXXXXXXXXXXXXXXXHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRIT 874
                                   D   IA   DD +++++N R  ++   L GHS  + 
Sbjct: 455 -RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVR 512
Query: 875 GLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPT 919
           G+AFS     + S+  D  + +W+ +G      + LQ  TG + +
Sbjct: 513 GVAFSPDGQTIASASDDKTVKLWNRNG------QLLQTLTGHSSS 551

>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577

Iteration: 1
 Score = 56.6 bits (135), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 124/566 (21%), Positives = 216/566 (38%), Gaps = 107/566 (18%)
Query: 455 VRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYS 514
           V++   ++AH   V  +AFS P+ Q  + +  DDKT+K+W+  NG       GH + V+ 
Sbjct: 6   VKERNRLEAHSSSVRGVAFS-PDGQ-TIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWG 62
Query: 515 VCPHHKENIQFIFSTALDGKIKAWLYDN--LGSRVDYEAPGRWCTTMAYSADGT------ 566
           V      + Q I S + D  +K W  +   L +   + +  R    +A+S DG       
Sbjct: 63  VA--FSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVR---GVAFSPDGQTIASAS 117
Query: 567 ---------------RTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTS 611
                          +T  G      GV  F        +A DD ++K W+ +  QLL +
Sbjct: 118 DDKTVKLWNRNGQLLQTLTGHSSSVWGVA-FSPDGQTIASASDDKTVKLWNRNG-QLLQT 175
Query: 612 IDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENS 671
           +   G   +   + F+ DG  +A +++D  +K+   +   +LL+T               
Sbjct: 176 L--TGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNG--QLLQTLTG------------ 219
Query: 672 KNGDVRSLADVKP---RITEESNDKS-KVWKLTELSEPNQCRSLRLPENL--RATKISRL 725
            +  VR +A   P    I   S+DK+ K+W           R+ +L + L   ++ ++ +
Sbjct: 220 HSSSVRGVA-FSPDGQTIASASDDKTVKLWN----------RNGQLLQTLTGHSSSVNGV 268
Query: 726 IFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNP 785
            F   G  I + + +    LW      RN           QL Q  +G            
Sbjct: 269 AFRPDGQTIASASDDKTVKLW-----NRNG----------QLLQTLTG-----------H 302
Query: 786 EEAVPCFALSKNDSYVMSASGGK-ISLFNXXXXXXXXXXXXXXXXXXXXXXHPQDNNIIA 844
             +V   A S +   + SAS  K + L+N                         D   IA
Sbjct: 303 SSSVWGVAFSPDGQTIASASDDKTVKLWN--RNGQHLQTLTGHSSSVWGVAFSPDGQTIA 360
Query: 845 IGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEK 904
              DD +++++N R  ++   L GHS  + G+AFS     + S+  D  + +W+ +G   
Sbjct: 361 SASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNG--- 416
Query: 905 QKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPRESSA 964
              + LQ  TG + +      V F  D        + +         + ++      SS 
Sbjct: 417 ---QLLQTLTGHSSSVWG---VAFSPDDQTIASASDDKTVKLWNRNGQLLQTLTGHSSS- 469
Query: 965 PITHATFSCDSQLVYACFLDATVCVF 990
            +    FS D Q + +   D TV ++
Sbjct: 470 -VRGVAFSPDGQTIASASDDKTVKLW 494

>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6 Length = 310

Iteration: 1
 Score = 50.8 bits (120), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 67/272 (24%), Positives = 118/272 (43%), Gaps = 52/272 (19%)
Query: 346 DLPKTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLG 405
           D+ KT +   N+      +DFHP +   +L     G + LW   ++  + +R+ +V    
Sbjct: 4   DIKKTFS---NRSDRVKGIDFHPTEP-WVLTTLYSGRVELWNYETQ--VEVRSIQV---- 53
Query: 406 ACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHV 465
               P++A      G  + R  W   GS          +++++Y+ G++V   ++ +AH 
Sbjct: 54  -TETPVRA------GKFIARKNWIIVGS------DDFRIRVFNYNTGEKV---VDFEAHP 97
Query: 466 GGVNDIAFSHPNKQLCVITCGDDKTIKVWD-ATNGAKQYIFEGHEAPVYSVCPHHKENIQ 524
             +  IA  HP K   V++  DD T+K+W+   N A +  FEGHE  V  V  + K+   
Sbjct: 98  DYIRSIAV-HPTKPY-VLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPST 155
Query: 525 FIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDT 584
           F  S  LD  +K W   +LG       P    TT              ++R +  V +  
Sbjct: 156 FA-SGCLDRTVKVW---SLGQ----STPNFTLTTG-------------QERGVNYVDYYP 194
Query: 585 TKNR--FLAAGDDFSIKFWDMDSVQLLTSIDA 614
             ++   + A DD +IK WD  +   + +++ 
Sbjct: 195 LPDKPYMITASDDLTIKIWDYQTKSCVATLEG 226

>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif Length = 304

Iteration: 1
 Score = 50.8 bits (120), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 67/272 (24%), Positives = 118/272 (43%), Gaps = 52/272 (19%)
Query: 346 DLPKTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLG 405
           D+ KT +   N+      +DFHP +   +L     G + LW   ++  + +R+ +V    
Sbjct: 4   DIKKTFS---NRSDRVKGIDFHPTEP-WVLTTLYSGRVELWNYETQ--VEVRSIQV---- 53
Query: 406 ACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHV 465
               P++A      G  + R  W   GS          +++++Y+ G++V   ++ +AH 
Sbjct: 54  -TETPVRA------GKFIARKNWIIVGS------DDFRIRVFNYNTGEKV---VDFEAHP 97
Query: 466 GGVNDIAFSHPNKQLCVITCGDDKTIKVWD-ATNGAKQYIFEGHEAPVYSVCPHHKENIQ 524
             +  IA  HP K   V++  DD T+K+W+   N A +  FEGHE  V  V  + K+   
Sbjct: 98  DYIRSIAV-HPTKPY-VLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPST 155
Query: 525 FIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDT 584
           F  S  LD  +K W   +LG       P    TT              ++R +  V +  
Sbjct: 156 FA-SGCLDRTVKVW---SLGQ----STPNFTLTTG-------------QERGVNYVDYYP 194
Query: 585 TKNR--FLAAGDDFSIKFWDMDSVQLLTSIDA 614
             ++   + A DD +IK WD  +   + +++ 
Sbjct: 195 LPDKPYMITASDDLTIKIWDYQTKSCVATLEG 226

>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN ALLOSTERIC Inhibitor Scf-I2 Length = 464

Iteration: 1
 Score = 50.1 bits (118), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 61/292 (20%), Positives = 110/292 (37%), Gaps = 59/292 (20%)
Query: 459 LEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPH 518
           L++  H GGV  + ++H      +++   D+T++VWD   G   ++FEGH + V  +   
Sbjct: 156 LQLSGHDGGVWALKYAHGG---ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIV 212
Query: 519 HKENIQFIFSTALDGKIKAWLY------DNLGSRVDY--------EAP-------GRWCT 557
             +NI++I + + D  +  W         + G   DY        E P       G   +
Sbjct: 213 EYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMAS 272
Query: 558 TMAYSADGTRTYQGFRKRSLGV---------------------VQFDTTKNRFLAAGDDF 596
               S  G     G    +L V                       +D  + R ++A  D 
Sbjct: 273 VRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDT 332
Query: 597 SIKFWDMDSVQLLTSIDADGGLPASPRI--RF----NKDGCLLAVSTNDNGIKILATSDG 650
           +I+ WD+++ +L+ ++     L    R+  +F      DG +     ND   K       
Sbjct: 333 TIRIWDLENGELMYTLQGHTALVGLLRLSDKFLVSAAADGSIRGWDANDYSRKFSYHHTN 392
Query: 651 IRLLRTF---ENLAYDASRTSENSKNGDVRSLADVKPRITEESNDKSKVWKL 699
           +  + TF   +N+    S    N  N  +RS   V   I +   D  ++W +
Sbjct: 393 LSAITTFYVSDNILVSGSENQFNIYN--LRSGKLVHANILK---DADQIWSV 439

>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif Length = 604

Iteration: 1
 Score = 49.7 bits (117), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 67/272 (24%), Positives = 117/272 (43%), Gaps = 52/272 (19%)
Query: 346 DLPKTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLG 405
           D+ KT +   N+      +DFHP +   +L     G + LW      ++ +R+ +V    
Sbjct: 4   DIKKTFS---NRSDRVKGIDFHPTEP-WVLTTLYSGRVELWNY--ETQVEVRSIQV---- 53
Query: 406 ACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHV 465
               P++A      G  + R  W   GS          +++++Y+ G++V   ++ +AH 
Sbjct: 54  -TETPVRA------GKFIARKNWIIVGS------DDFRIRVFNYNTGEKV---VDFEAHP 97
Query: 466 GGVNDIAFSHPNKQLCVITCGDDKTIKVWD-ATNGAKQYIFEGHEAPVYSVCPHHKENIQ 524
             +  IA  HP K   V++  DD T+K+W+   N A +  FEGHE  V  V  + K+   
Sbjct: 98  DYIRSIAV-HPTKPY-VLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPST 155
Query: 525 FIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDT 584
           F  S  LD  +K W   +LG       P    TT              ++R +  V +  
Sbjct: 156 FA-SGCLDRTVKVW---SLGQ----STPNFTLTTG-------------QERGVNYVDYYP 194
Query: 585 TKNR--FLAAGDDFSIKFWDMDSVQLLTSIDA 614
             ++   + A DD +IK WD  +   + +++ 
Sbjct: 195 LPDKPYMITASDDLTIKIWDYQTKSCVATLEG 226

>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex Length = 464

Iteration: 1
 Score = 49.7 bits (117), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 22/80 (27%), Positives = 43/80 (53%), Gaps = 3/80 (3%)
Query: 459 LEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPH 518
           L++  H GGV  + ++H      +++   D+T++VWD   G   ++FEGH + V  +   
Sbjct: 156 LQLSGHDGGVWALKYAHGG---ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIV 212
Query: 519 HKENIQFIFSTALDGKIKAW 538
             +NI++I + + D  +  W
Sbjct: 213 EYKNIKYIVTGSRDNTLHVW 232

>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex Of The Copi Vesicular Coat Length = 814

Iteration: 1
 Score = 49.3 bits (116), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 66/272 (24%), Positives = 117/272 (43%), Gaps = 52/272 (19%)
Query: 346 DLPKTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLG 405
           D+ KT +   N+      +DFHP +   +L     G + +W      ++ +R+ +V    
Sbjct: 4   DIKKTFS---NRSDRVKGIDFHPTEP-WVLTTLYSGRVEIWNY--ETQVEVRSIQV---- 53
Query: 406 ACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHV 465
               P++A      G  + R  W   GS          +++++Y+ G++V   ++ +AH 
Sbjct: 54  -TETPVRA------GKFIARKNWIIVGS------DDFRIRVFNYNTGEKV---VDFEAHP 97
Query: 466 GGVNDIAFSHPNKQLCVITCGDDKTIKVWD-ATNGAKQYIFEGHEAPVYSVCPHHKENIQ 524
             +  IA  HP K   V++  DD T+K+W+   N A +  FEGHE  V  V  + K+   
Sbjct: 98  DYIRSIAV-HPTKPY-VLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPST 155
Query: 525 FIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDT 584
           F  S  LD  +K W   +LG       P    TT              ++R +  V +  
Sbjct: 156 FA-SGCLDRTVKVW---SLGQ----STPNFTLTTG-------------QERGVNYVDYYP 194
Query: 585 TKNR--FLAAGDDFSIKFWDMDSVQLLTSIDA 614
             ++   + A DD +IK WD  +   + +++ 
Sbjct: 195 LPDKPYMITASDDLTIKIWDYQTKSCVATLEG 226

>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex: Destruction Motif Binding And Lysine Specificity On The Scfbeta-Trcp1 Ubiquitin Ligase Length = 435

Iteration: 1
 Score = 46.6 bits (109), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 51/208 (24%), Positives = 88/208 (42%), Gaps = 29/208 (13%)
Query: 397 RNFKVWDLGA-CSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEV 455
           R+  VWD+ +   + L+  LV     +VN V    D      A     +++++    + V
Sbjct: 233 RSIAVWDMASPTDITLRRVLVGHRA-AVNVV--DFDDKYIVSASGDRTIKVWNTSTCEFV 289
Query: 456 RQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSV 515
           R    ++ H  G+  + +    +   V++   D TI++WD   GA   + EGHE  V  +
Sbjct: 290 RT---LNGHKRGIACLQY----RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCI 342
Query: 516 CPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKR 575
              +K     I S A DGKIK W   +L + +D  AP            GT   +   + 
Sbjct: 343 RFDNKR----IVSGAYDGKIKVW---DLVAALDPRAPA-----------GTLCLRTLVEH 384
Query: 576 SLGVVQFDTTKNRFLAAGDDFSIKFWDM 603
           S  V +    + + +++  D +I  WD 
Sbjct: 385 SGRVFRLQFDEFQIVSSSHDDTILIWDF 412

>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine Apaf-1 Length = 1256

Iteration: 1
 Score = 46.6 bits (109), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 89/506 (17%), Positives = 175/506 (34%), Gaps = 97/506 (19%)
Query: 422  SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLC 481
            +V    +S DG       +   +Q++    G+++   L+I AH   V   AFS  +    
Sbjct: 624  AVYHACFSQDGQRIASCGADKTLQVFKAETGEKL---LDIKAHEDEVLCCAFSSDDSY-- 678
Query: 482  VITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYD 541
            + TC  DK +K+WD+  G   + ++ H   V      +K N   + + + D  +K W   
Sbjct: 679  IATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLW--- 735
Query: 542  NLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFW 601
                    +   + C    +              S+   +F        +   D +++ W
Sbjct: 736  --------DLNQKECRNTMFG----------HTNSVNHCRFSPDDELLASCSADGTLRLW 777
Query: 602  DMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLA 661
            D+ S     SI+      +S     + +  +   S + +G KI+  +    LL       
Sbjct: 778  DVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSG 837
Query: 662  YDASRTSENSKNGDVRSLADVKPR----ITEESNDKSKVWKLTELSEPNQCRSLRLPENL 717
              A     ++ +       D  P     +   S    ++W +    +   CR        
Sbjct: 838  LLAEI---HTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRG------- 887
Query: 718  RATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMT 777
              + +  ++F+  G++ L  + +    +W+ ++  +NS+      +     +  + ++  
Sbjct: 888  HLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAV 947
Query: 778  NDV------------TDSNPEEAVPCFALSKNDSYVMSASGGKISLFNXXXXXXXXXXXX 825
            +++             D  PE  V C  LS +  YV                        
Sbjct: 948  DNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYV------------------------ 983
Query: 826  XXXXXXXXXXHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVL 885
                              A G +D +I+I  +  + V S   GH K +  + F+     L
Sbjct: 984  ------------------AFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTL 1025
Query: 886  VSSGADSQLCVWSSDGWEKQKNRFLQ 911
            +SS  DS + VW+   W+     FLQ
Sbjct: 1026 ISSSEDSVIQVWN---WQTGDYVFLQ 1048

>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 317

Iteration: 1
 Score = 46.6 bits (109), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 54/258 (20%), Positives = 95/258 (36%), Gaps = 34/258 (13%)
Query: 423 VNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCV 482
           V+ V+ S DG           ++++    G   R+ +    H   V  +AFS  N+Q  +
Sbjct: 66  VSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFV---GHTKDVLSVAFSSDNRQ--I 120
Query: 483 ITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQ--FIFSTALDGKIKAWLY 540
           ++   DKTIK+W+ T G  +Y  +      +  C     N     I S   D  +K W  
Sbjct: 121 VSGSRDKTIKLWN-TLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNL 179
Query: 541 DNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDF---- 596
            N   + ++     +  T+  S DG+    G +     +   +  K+ +   G D     
Sbjct: 180 ANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINAL 239
Query: 597 ---------------SIKFWDMDS-------VQLLTSIDADGGLPASPRIRFNKDGCLLA 634
                          SIK WD++         Q + S  +    P    + ++ DG  L 
Sbjct: 240 CFSPNRYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLF 299
Query: 635 VSTNDNGIKILATSDGIR 652
               DN +++   + G R
Sbjct: 300 AGYTDNLVRVWQVTIGTR 317

>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1 Length = 1249

Iteration: 1
 Score = 46.6 bits (109), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 89/506 (17%), Positives = 175/506 (34%), Gaps = 97/506 (19%)
Query: 422  SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLC 481
            +V    +S DG       +   +Q++    G+++   L+I AH   V   AFS  +    
Sbjct: 617  AVYHACFSQDGQRIASCGADKTLQVFKAETGEKL---LDIKAHEDEVLCCAFSSDDSY-- 671
Query: 482  VITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYD 541
            + TC  DK +K+WD+  G   + ++ H   V      +K N   + + + D  +K W   
Sbjct: 672  IATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLW--- 728
Query: 542  NLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFW 601
                    +   + C    +              S+   +F        +   D +++ W
Sbjct: 729  --------DLNQKECRNTMFG----------HTNSVNHCRFSPDDELLASCSADGTLRLW 770
Query: 602  DMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLA 661
            D+ S     SI+      +S     + +  +   S + +G KI+  +    LL       
Sbjct: 771  DVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSG 830
Query: 662  YDASRTSENSKNGDVRSLADVKPR----ITEESNDKSKVWKLTELSEPNQCRSLRLPENL 717
              A     ++ +       D  P     +   S    ++W +    +   CR        
Sbjct: 831  LLAEI---HTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRG------- 880
Query: 718  RATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMT 777
              + +  ++F+  G++ L  + +    +W+ ++  +NS+      +     +  + ++  
Sbjct: 881  HLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAV 940
Query: 778  NDV------------TDSNPEEAVPCFALSKNDSYVMSASGGKISLFNXXXXXXXXXXXX 825
            +++             D  PE  V C  LS +  YV                        
Sbjct: 941  DNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYV------------------------ 976
Query: 826  XXXXXXXXXXHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVL 885
                              A G +D +I+I  +  + V S   GH K +  + F+     L
Sbjct: 977  ------------------AFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTL 1018
Query: 886  VSSGADSQLCVWSSDGWEKQKNRFLQ 911
            +SS  DS + VW+   W+     FLQ
Sbjct: 1019 ISSSEDSVIQVWN---WQTGDYVFLQ 1041

>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A Resolution Of 2.45 Angstrom Length = 340

Iteration: 1
 Score = 46.2 bits (108), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 54/258 (20%), Positives = 95/258 (36%), Gaps = 34/258 (13%)
Query: 423 VNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCV 482
           V+ V+ S DG           ++++    G   R+ +    H   V  +AFS  N+Q  +
Sbjct: 89  VSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFV---GHTKDVLSVAFSSDNRQ--I 143
Query: 483 ITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQ--FIFSTALDGKIKAWLY 540
           ++   DKTIK+W+ T G  +Y  +      +  C     N     I S   D  +K W  
Sbjct: 144 VSGSRDKTIKLWN-TLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNL 202
Query: 541 DNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDF---- 596
            N   + ++     +  T+  S DG+    G +     +   +  K+ +   G D     
Sbjct: 203 ANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINAL 262
Query: 597 ---------------SIKFWDMDS-------VQLLTSIDADGGLPASPRIRFNKDGCLLA 634
                          SIK WD++         Q + S  +    P    + ++ DG  L 
Sbjct: 263 CFSPNRYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLF 322
Query: 635 VSTNDNGIKILATSDGIR 652
               DN +++   + G R
Sbjct: 323 AGYTDNLVRVWQVTIGTR 340

>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4 Length = 425

Iteration: 1
 Score = 45.8 bits (107), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 31/117 (26%), Positives = 52/117 (44%), Gaps = 7/117 (5%)
Query: 433 SLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIK 492
           SLFG       + I+     +  +    +DAH   VN ++F+ P  +  + T   DKT+ 
Sbjct: 241 SLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFN-PYSEFILATGSADKTVA 299
Query: 493 VWDATN-GAKQYIFEGHEAPVYSV--CPHHKENIQFIFSTALDGKIKAWLYDNLGSR 546
           +WD  N   K + FE H+  ++ V   PH   N   + S+  D ++  W    +G  
Sbjct: 300 LWDLRNLKLKLHSFESHKDEIFQVQWSPH---NETILASSGTDRRLNVWDLSKIGEE 353

>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana Length = 694

Iteration: 1
 Score = 45.4 bits (106), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 50/215 (23%), Positives = 82/215 (38%), Gaps = 27/215 (12%)
Query: 423 VNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCV 482
           V  V+ S DG           ++++    G   R+ +    H   V  +AFS  N+Q  +
Sbjct: 433 VEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFV---GHTKDVLSVAFSLDNRQ--I 487
Query: 483 ITCGDDKTIKVWDATNGAKQYIFEGHEAPV-YSVCPHHKENIQ--FIFSTALDGKIKAWL 539
           ++   D+TIK+W+     K  I EG E    +  C     N     I S + D  +K W 
Sbjct: 488 VSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWN 547
Query: 540 YDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTK------------- 586
             N   R        + +T+A S DG+    G +   + +      K             
Sbjct: 548 LSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEANSVIHA 607
Query: 587 -----NRF-LAAGDDFSIKFWDMDSVQLLTSIDAD 615
                NR+ L A  +  IK WD++S  ++  +  D
Sbjct: 608 LCFSPNRYWLCAATEHGIKIWDLESKSIVEDLKVD 642

>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide Length = 430

Iteration: 1
 Score = 45.4 bits (106), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 31/117 (26%), Positives = 52/117 (44%), Gaps = 7/117 (5%)
Query: 433 SLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIK 492
           SLFG       + I+     +  +    +DAH   VN ++F+ P  +  + T   DKT+ 
Sbjct: 245 SLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFN-PYSEFILATGSADKTVA 303
Query: 493 VWDATN-GAKQYIFEGHEAPVYSV--CPHHKENIQFIFSTALDGKIKAWLYDNLGSR 546
           +WD  N   K + FE H+  ++ V   PH   N   + S+  D ++  W    +G  
Sbjct: 304 LWDLRNLKLKLHSFESHKDEIFQVQWSPH---NETILASSGTDRRLHVWDLSKIGEE 357

>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55 Length = 432

Iteration: 1
 Score = 45.4 bits (106), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 31/117 (26%), Positives = 52/117 (44%), Gaps = 7/117 (5%)
Query: 433 SLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIK 492
           SLFG       + I+     +  +    +DAH   VN ++F+ P  +  + T   DKT+ 
Sbjct: 247 SLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFN-PYSEFILATGSADKTVA 305
Query: 493 VWDATN-GAKQYIFEGHEAPVYSV--CPHHKENIQFIFSTALDGKIKAWLYDNLGSR 546
           +WD  N   K + FE H+  ++ V   PH   N   + S+  D ++  W    +G  
Sbjct: 306 LWDLRNLKLKLHSFESHKDEIFQVQWSPH---NETILASSGTDRRLHVWDLSKIGEE 359

>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3 Length = 422

Iteration: 1
 Score = 44.7 bits (104), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 31/117 (26%), Positives = 52/117 (44%), Gaps = 7/117 (5%)
Query: 433 SLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIK 492
           SLFG       + I+     +  +    +DAH   VN ++F+ P  +  + T   DKT+ 
Sbjct: 249 SLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFN-PYSEFILATGSADKTVA 307
Query: 493 VWDATN-GAKQYIFEGHEAPVYSV--CPHHKENIQFIFSTALDGKIKAWLYDNLGSR 546
           +WD  N   K + FE H+  ++ V   PH   N   + S+  D ++  W    +G  
Sbjct: 308 LWDLRNLKLKLHSFESHKDEIFQVQWSPH---NETILASSGTDRRLHVWDLSKIGEE 361

>pdb|2PM9|A Chain A, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE Copii Vesicular Coat Length = 416

Iteration: 1
 Score = 44.3 bits (103), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 51/222 (22%), Positives = 85/222 (38%), Gaps = 33/222 (14%)
Query: 350 TVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSM 409
           ++ R  N  SS  ++ F+  Q  +L  G N G+I                 +WD+  C+ 
Sbjct: 105 SMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIF----------------IWDMNKCTE 148
Query: 410 PLQAALVKDPG---VSVNRVI---WSPD-GSLFGVAYSRHIVQIYSYHGGDEVRQHLEID 462
                    PG    SV+ VI   W+     +F  A S +   I+      EV  HL   
Sbjct: 149 SPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVI-HLSYT 207
Query: 463 AHVGGVND---IAFSHPNKQLCVITC---GDDKTIKVWDATNGAK--QYIFEGHEAPVYS 514
           +   G+     +   HP     V T     +D +I +WD  N     Q + +GH+  + S
Sbjct: 208 SPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILS 267
Query: 515 VCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWC 556
           +   H++    + S+  D  +  W  ++      + A G WC
Sbjct: 268 LDWCHQDE-HLLLSSGRDNTVLLWNPESAEQLSQFPARGNWC 308

>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit In Complex With Initiation Factor 1. This File Contains The 40s Subunit And Initiation Factor For Molecule 1 Length = 343

Iteration: 1
 Score = 43.9 bits (102), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 33/109 (30%), Positives = 51/109 (46%), Gaps = 10/109 (9%)
Query: 458 HLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVC- 516
           H  +  H   V+D+A S  N     I+   DKT+++WD   G     F GH++ VYSV  
Sbjct: 69  HKALTGHNHFVSDLALSQEN--CFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAF 126
Query: 517 -PHHKENIQFIFSTALDGKIKAW--LYDNLGSRVDYEAPGRWCTTMAYS 562
            P +++    I S   + +IK W  L +   S  + E    W + + YS
Sbjct: 127 SPDNRQ----ILSAGAEREIKLWNILGECKFSSAEKENHSDWVSCVRYS 171

>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH Histone H4 Length = 414

Iteration: 1
 Score = 43.9 bits (102), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 31/117 (26%), Positives = 51/117 (43%), Gaps = 7/117 (5%)
Query: 433 SLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIK 492
           SLFG       + I+        +    +DAH   VN ++F+ P  +  + T   DKT+ 
Sbjct: 243 SLFGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFN-PYSEFILATGSADKTVA 301
Query: 493 VWDATN-GAKQYIFEGHEAPVYSV--CPHHKENIQFIFSTALDGKIKAWLYDNLGSR 546
           +WD  N   K + FE H+  ++ V   PH   N   + S+  D ++  W    +G  
Sbjct: 302 LWDLRNLKLKLHTFESHKDEIFQVHWSPH---NETILASSGTDRRLNVWDLSKIGEE 355

>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410

Iteration: 1
 Score = 43.5 bits (101), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 63/299 (21%), Positives = 123/299 (41%), Gaps = 44/299 (14%)
Query: 461 IDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHK 520
           +  H   V  + F HP   + +++  +D TIKVWD   G  +   +GH   V  +   H 
Sbjct: 104 LSGHRSPVTRVIF-HPVFSV-MVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDH- 160
Query: 521 ENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVV 580
            + + + S + D  IK W +                       +  RT  G    ++  V
Sbjct: 161 -SGKLLASCSADMTIKLWDFQGF--------------------ECIRTMHG-HDHNVSSV 198
Query: 581 QFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDN 640
                 +  ++A  D +IK W++ +   + +    G       +R N+DG L+A  +ND 
Sbjct: 199 SIMPNGDHIVSASRDKTIKMWEVQTGYCVKTF--TGHREWVRMVRPNQDGTLIASCSNDQ 256
Query: 641 GIK--ILATSDGIRLLRTFENL------AYDASRTSENSKNG-DVRSLADVKPRITEESN 691
            ++  ++AT +    LR   ++      A ++S +S +   G + +      P +   S 
Sbjct: 257 TVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSR 316
Query: 692 DKS-KVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQ 749
           DK+ K+W   ++S      +L   +N     +  ++F + G  IL+ A +    +W ++
Sbjct: 317 DKTIKMW---DVSTGMCLMTLVGHDNW----VRGVLFHSGGKFILSCADDKTLRVWDYK 368

>pdb|3JRO|A Chain A, Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice Length = 753

Iteration: 1
 Score = 43.5 bits (101), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 29/96 (30%), Positives = 44/96 (45%), Gaps = 14/96 (14%)
Query: 462 DAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYI--FEGHEAPVYSVCPHH 519
           +AH   ++D    +  K+L   TC  DKTIK+++      + I    GHE PV+ V   H
Sbjct: 6   NAHNELIHDAVLDYYGKRLA--TCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAH 63
Query: 520 KENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRW 555
            +    + S + DGK+  W  +N          GRW
Sbjct: 64  PKFGTILASCSYDGKVLIWKEEN----------GRW 89

>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH Histone H4 Length = 414

Iteration: 1
 Score = 43.5 bits (101), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 31/117 (26%), Positives = 51/117 (43%), Gaps = 7/117 (5%)
Query: 433 SLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIK 492
           SLFG       + I+        +    +DAH   VN ++F+ P  +  + T   DKT+ 
Sbjct: 243 SLFGSVADDQKLXIWDTRSNTTSKPSHLVDAHTAEVNCLSFN-PYSEFILATGSADKTVA 301
Query: 493 VWDATN-GAKQYIFEGHEAPVYSV--CPHHKENIQFIFSTALDGKIKAWLYDNLGSR 546
           +WD  N   K + FE H+  ++ V   PH   N   + S+  D ++  W    +G  
Sbjct: 302 LWDLRNLKLKLHTFESHKDEIFQVHWSPH---NETILASSGTDRRLNVWDLSKIGEE 355

>pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form Length = 402

Iteration: 1
 Score = 43.1 bits (100), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 36/146 (24%), Positives = 58/146 (39%), Gaps = 18/146 (12%)
Query: 507 GHEAPVYSV--CPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSAD 564
           GH APV  +  CPH   N   I S + D  +  W   + G  +    P            
Sbjct: 79  GHTAPVLDIAWCPH---NDNVIASGSEDCTVMVWEIPDGGLVLPLREP------------ 123
Query: 565 GTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRI 624
              T +G  KR   V    T +N  L+AG D  I  WD+ +   + ++  D        +
Sbjct: 124 -VITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSV 182
Query: 625 RFNKDGCLLAVSTNDNGIKILATSDG 650
            +++DG L+  S  D  ++++    G
Sbjct: 183 DWSRDGALICTSCRDKRVRVIEPRKG 208

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	1082
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	7e-18
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	2e-13
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	1e-09
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	3e-09
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	1e-08
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	4e-08
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	1e-04
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	1e-04
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	7e-17
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	2e-15
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	1e-14
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	6e-12
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	1e-09
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	5e-15
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	3e-12
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	8e-09
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	2e-08
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	2e-08
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	3e-05
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	1e-04
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	5e-13
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	1e-11
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	4e-06
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	7e-06
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	4e-04
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	7e-11
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	8e-10
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	8e-08
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	3e-07
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	2e-05
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	0.001
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	5e-10
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	8e-09
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	1e-06
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	4e-04
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	8e-10
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	9e-10
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	3e-09
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	2e-05
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	3e-09
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	2e-06
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	5e-06
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	2e-04
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	3e-09
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	7e-08
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	2e-07
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	6e-07
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	0.002
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	0.004
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	3e-09
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	2e-06
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	3e-06
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	6e-06
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	5e-04
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	7e-09
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	3e-06
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	2e-04
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	2e-04
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	3e-04
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	1e-08
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	2e-05
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	4e-04
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	0.001
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	0.004
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	3e-08
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	3e-08
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	9e-08
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	8e-06
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	3e-05
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	3e-04
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	7e-04
d1ri6a_	333	b.69.11.1 (A:) Putative isomerase YbhE {Escherichi	1e-07
d2bbkh_	355	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	3e-07
d2bbkh_	355	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	2e-05
d2bbkh_	355	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	4e-05
d2bbkh_	355	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	3e-04
d1qksa2	432	b.70.2.1 (A:136-567) C-terminal (heme d1) domain o	4e-07
d1qksa2	432	b.70.2.1 (A:136-567) C-terminal (heme d1) domain o	5e-05
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	4e-07
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	5e-07
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	2e-05
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	0.001
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	2e-06
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	9e-06
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	1e-04
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	6e-04
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	0.001
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	3e-06
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	4e-06
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	8e-06
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	3e-05
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	4e-04
d1hzua2	426	b.70.2.1 (A:118-543) C-terminal (heme d1) domain o	6e-05
d1hzua2	426	b.70.2.1 (A:118-543) C-terminal (heme d1) domain o	6e-05
d1l0qa2	301	b.69.2.3 (A:1-301) Surface layer protein {Archaeon	1e-04
d1l0qa2	301	b.69.2.3 (A:1-301) Surface layer protein {Archaeon	6e-04
d1mdah_	368	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	4e-04
d1mdah_	368	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	6e-04
d1qnia2	441	b.69.3.1 (A:10-450) Nitrous oxide reductase, N-ter	0.001

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 84.9 bits (208), Expect = 7e-18
 Identities = 55/376 (14%), Positives = 106/376 (28%), Gaps = 62/376 (16%)

Query: 317 INLPVNVLPVSFTGHSHSHSHSQAFSTPEDLPKTVTRTLNQGSSPMSMDFHPVQQTLLLV 376
           ++L    +P +    ++ +      + P ++   + ++L+  S    + F       L  
Sbjct: 21  LDLDSQSVPDALKKQTNDYYILYNPALPREIDVELHKSLDHTSVVCCVKFSN-DGEYLAT 79

Query: 377 GTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFG 436
           G N     ++ V S   LV R             L  +      + +  V +SPDG    
Sbjct: 80  GCN-KTTQVYRV-SDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLA 137

Query: 437 VAYSRHIVQIYSYHGG-------------------------------------DEVRQHL 459
                 +++I+                                          D      
Sbjct: 138 TGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQC 197

Query: 460 EIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNG-------AKQYIFEGHEAPV 512
            +   +          P     +     D+ ++VWD+  G       ++     GH+  V
Sbjct: 198 SLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSV 257

Query: 513 YSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGF 572
           YSV        Q + S +LD  +K W   N  ++ D + P      + Y           
Sbjct: 258 YSVVFTRDG--QSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLS-- 313

Query: 573 RKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGG----LPASPRIRFNK 628
                  V         L+   D  + FWD  S   L  +         +  +       
Sbjct: 314 -------VATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGP 366

Query: 629 DGCLLAVSTNDNGIKI 644
           +  + A  + D   +I
Sbjct: 367 EYNVFATGSGDCKARI 382

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 71.0 bits (172), Expect = 2e-13
 Identities = 26/195 (13%), Positives = 63/195 (32%), Gaps = 31/195 (15%)

Query: 359 SSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKD 418
               ++   P     +  G+    + +W+  +              G     L +     
Sbjct: 205 DGVTTVAVSPGDGKYIAAGSLDRAVRVWDSET--------------GFLVERLDSENESG 250

Query: 419 PGV--SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHV---------GG 467
            G   SV  V+++ DG           V++++    +        ++             
Sbjct: 251 TGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDF 310

Query: 468 VNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENI---- 523
           V  +A +  ++   +++   D+ +  WD  +G    + +GH   V SV   +  ++    
Sbjct: 311 VLSVATTQNDE--YILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEY 368

Query: 524 QFIFSTALDGKIKAW 538
               + + D K + W
Sbjct: 369 NVFATGSGDCKARIW 383

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 59.4 bits (142), Expect = 1e-09
 Identities = 39/336 (11%), Positives = 95/336 (28%), Gaps = 49/336 (14%)

Query: 587 NRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNK-----DGCLLAVSTNDNG 641
             +LA G + + + + +    L+  +  D      P           D  + +V  + +G
Sbjct: 74  GEYLATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDG 133

Query: 642 IKILATSDGIRLLRTFENLAYDASRTSENSKNGDVRSLADVKPRITEESNDKSKVWKLTE 701
            K LAT    RL+R ++          +  +                  +    V     
Sbjct: 134 -KFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRI--- 189

Query: 702 LSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATA 761
               +               ++ +  +      +A  S    +      T          
Sbjct: 190 ---WDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGF-------- 238

Query: 762 SVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASG-GKISLFNMMTFKTM 820
                        + + + + +  +++V     +++   V+S S    + L+N+      
Sbjct: 239 ---------LVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNK 289

Query: 821 ATFMPPPPAA------------TFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKG 868
           +    P                  +A    ++  I  G  D  +  ++ +       L+G
Sbjct: 290 SDSKTPNSGTCEVTYIGHKDFVLSVATTQ-NDEYILSGSKDRGVLFWDKKSGNPLLMLQG 348

Query: 869 HSKRITGLAFSHAL------NVLVSSGADSQLCVWS 898
           H   +  +A ++        NV  +   D +  +W 
Sbjct: 349 HRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWK 384

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 58.3 bits (139), Expect = 3e-09
 Identities = 32/255 (12%), Positives = 72/255 (28%), Gaps = 17/255 (6%)

Query: 754 NSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFN 813
           +  GK  A+ A         I     V      E              + +  G  ++  
Sbjct: 130 SPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRI 189

Query: 814 M-MTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNV-------RVDEVKSK 865
             +     +  +      T +A  P D   IA G  D ++++++        R+D     
Sbjct: 190 WDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENES 249

Query: 866 LKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSD-- 923
             GH   +  + F+     +VS   D  + +W+      + +           T      
Sbjct: 250 GTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKD 309

Query: 924 --TRVQFHQDQIHFLVVHET-QLAIFETTKLECVKQWVPRESS----APITHATFSCDSQ 976
               V   Q+  + L   +   +  ++      +       +S    A    ++   +  
Sbjct: 310 FVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYN 369

Query: 977 LVYACFLDATVCVFS 991
           +      D    ++ 
Sbjct: 370 VFATGSGDCKARIWK 384

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 56.3 bits (134), Expect = 1e-08
 Identities = 22/194 (11%), Positives = 56/194 (28%), Gaps = 31/194 (15%)

Query: 427 IWSPDGSLFGVAYSRHIVQIYSYHGGDEVR----QHLEIDAHVGGVNDIAFSHPNKQLCV 482
           +   DG           V+++    G  V     ++     H   V  + F+   + +  
Sbjct: 212 VSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSV-- 269

Query: 483 ITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENI----------QFIFSTALD 532
           ++   D+++K+W+  N   +   +   +    V     ++           ++I S + D
Sbjct: 270 VSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKD 329

Query: 533 GKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAA 592
             +  W   +    +  +       ++A +                        N F   
Sbjct: 330 RGVLFWDKKSGNPLLMLQGHRNSVISVAVANG---------------SSLGPEYNVFATG 374

Query: 593 GDDFSIKFWDMDSV 606
             D   + W    +
Sbjct: 375 SGDCKARIWKYKKI 388

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 54.4 bits (129), Expect = 4e-08
 Identities = 17/142 (11%), Positives = 36/142 (25%), Gaps = 17/142 (11%)

Query: 359 SSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKD 418
            S  S+ F       ++ G+    + LW + +                 +          
Sbjct: 255 DSVYSVVFTR-DGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTY-------IG 306

Query: 419 PGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFS---- 474
               V  V  + +            V  +    G+ +     +  H   V  +A +    
Sbjct: 307 HKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLL---MLQGHRNSVISVAVANGSS 363

Query: 475 -HPNKQLCVITCGDDKTIKVWD 495
             P   +   T   D   ++W 
Sbjct: 364 LGPEYNV-FATGSGDCKARIWK 384

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 43.6 bits (101), Expect = 1e-04
 Identities = 50/336 (14%), Positives = 108/336 (32%), Gaps = 58/336 (17%)

Query: 464 HVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEG---------------- 507
           H   V  + FS+  + L     G +KT +V+  ++G+                       
Sbjct: 61  HTSVVCCVKFSNDGEYLA---TGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSS 117

Query: 508 --HEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADG 565
              +  + SVC     + +F+ + A D  I+ W  +N    +  +   +   ++ Y   G
Sbjct: 118 PSSDLYIRSVCFSP--DGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSG 175

Query: 566 TRTYQGFRKRSL---------------------GVVQFDTTKNRFLAAGDDFSIKFWDMD 604
            +   G   R++                      V           A   D +++ WD +
Sbjct: 176 DKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSE 235

Query: 605 SVQLLTSIDADGGLPASPR-----IRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFEN 659
           +  L+  +D++       +     + F +DG  +   + D  +K+    +      +   
Sbjct: 236 TGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTP 295

Query: 660 LAYDASRTSENSKNGDVRSLADVK--PRITEESNDKS-KVWKLTELSEPNQCRSLRLPEN 716
            +     T    K+  V S+A  +    I   S D+    W   +    N    L+   N
Sbjct: 296 NSGTCEVTYIGHKD-FVLSVATTQNDEYILSGSKDRGVLFW---DKKSGNPLLMLQGHRN 351

Query: 717 --LRATKISRLIFTNSGNAILALASNAIHLLWKWQR 750
             +     +        N     + +    +WK+++
Sbjct: 352 SVISVAVANGSSLGPEYNVFATGSGDCKARIWKYKK 387

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 43.2 bits (100), Expect = 1e-04
 Identities = 43/336 (12%), Positives = 90/336 (26%), Gaps = 66/336 (19%)

Query: 422 SVNRVIWSPDGSLFGVAYSRHI----------VQIYSYHGGD----EVRQHLEIDAHVGG 467
            V  V +S DG       ++            V   S         E        +    
Sbjct: 64  VVCCVKFSNDGEYLATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLY 123

Query: 468 VNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIF 527
           +  + FS   K   + T  +D+ I++WD  N  ++ +              +  +   + 
Sbjct: 124 IRSVCFSPDGK--FLATGAEDRLIRIWDIEN--RKIVMILQGHEQDIYSLDYFPSGDKLV 179

Query: 528 STALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGV-------- 579
           S + D  ++ W        +         T      DG     G   R++ V        
Sbjct: 180 SGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFL 239

Query: 580 --------------------VQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLP 619
                               V F       ++   D S+K W++ +    +         
Sbjct: 240 VERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGT 299

Query: 620 ASP----------RIRFNKDGCLLAVSTNDNGIKILATSDG--IRLLRTFENLAYDASRT 667
                         +   ++   +   + D G+       G  + +L+   N     +  
Sbjct: 300 CEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVA 359

Query: 668 SENSKNGDVRSLADVKPRITEESNDKS-KVWKLTEL 702
           + +S   +    A         S D   ++WK  ++
Sbjct: 360 NGSSLGPEYNVFATG-------SGDCKARIWKYKKI 388

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 81.3 bits (199), Expect = 7e-17
 Identities = 27/141 (19%), Positives = 54/141 (38%), Gaps = 12/141 (8%)

Query: 400 KVWDL--GACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQ 457
           K+WD+  G C               +N + + P+G+ F         +++      E+  
Sbjct: 209 KLWDVREGMCRQTF-----TGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMT 263

Query: 458 HLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCP 517
           +   D  + G+  ++FS   + L  +   DD    VWDA    +  +  GH+  V  +  
Sbjct: 264 Y-SHDNIICGITSVSFSKSGRLL--LAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGV 320

Query: 518 HHKENIQFIFSTALDGKIKAW 538
               +   + + + D  +K W
Sbjct: 321 TD--DGMAVATGSWDSFLKIW 339

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 77.1 bits (188), Expect = 2e-15
 Identities = 27/163 (16%), Positives = 54/163 (33%), Gaps = 9/163 (5%)

Query: 739 SNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKND 798
           +  +  L     T    SG   AS   +LW    G+      T +  E  +       N 
Sbjct: 184 TGDVMSLSLAPDTRLFVSGACDASA--KLWDVREGMCRQ---TFTGHESDINAICFFPNG 238

Query: 799 SYVMSASGG---KISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIY 855
           +   + S     ++            +        T ++F      ++  G DD +  ++
Sbjct: 239 NAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSK-SGRLLLAGYDDFNCNVW 297

Query: 856 NVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS 898
           +    +    L GH  R++ L  +     + +   DS L +W+
Sbjct: 298 DALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 74.0 bits (180), Expect = 1e-14
 Identities = 50/332 (15%), Positives = 98/332 (29%), Gaps = 49/332 (14%)

Query: 338 SQAFSTPEDLPKT---VTRTLNQGSSP-MSMDFHPVQQTLLLVGTNVGDIGLWEVGSRER 393
           SQ  +  + + +      RTL    +   +M +      LL+  +  G + +W+  +  +
Sbjct: 31  SQITNNIDPVGRIQMRTRRTLRGHLAKIYAMHWGT-DSRLLVSASQDGKLIIWDSYTTNK 89

Query: 394 LVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGD 453
           +     +   +  C+       V   G+     I++       V  SR +     Y    
Sbjct: 90  VHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCC 149

Query: 454 EVRQHLEIDAHVGGVNDIAFSHPNKQLCV---------------------ITCGDDKTIK 492
                 +I    G      +     Q                        ++   D + K
Sbjct: 150 RFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAK 209

Query: 493 VWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAP 552
           +WD   G  +  F GHE+ + ++C     N     + + D   + +        + Y   
Sbjct: 210 LWDVREGMCRQTFTGHESDINAICFFPNGN--AFATGSDDATCRLFDLRADQELMTYSHD 267

Query: 553 GRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSI 612
              C   +                   V F  +    LA  DDF+   WD         +
Sbjct: 268 NIICGITS-------------------VSFSKSGRLLLAGYDDFNCNVWDALKADRAGVL 308

Query: 613 DADGGLPASPRIRFNKDGCLLAVSTNDNGIKI 644
                  +   +    DG  +A  + D+ +KI
Sbjct: 309 AGHDNRVSC--LGVTDDGMAVATGSWDSFLKI 338

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 65.9 bits (159), Expect = 6e-12
 Identities = 20/158 (12%), Positives = 49/158 (31%), Gaps = 9/158 (5%)

Query: 835 FHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQL 894
               D  +   G  D+S ++++VR    +    GH   I  + F    N   +   D+  
Sbjct: 191 SLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATC 250

Query: 895 CVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHET-QLAIFETTKLEC 953
            ++     ++                   T V F +     L  ++     +++  K + 
Sbjct: 251 RLFDLRADQELMTYSHDNIICGI------TSVSFSKSGRLLLAGYDDFNCNVWDALKADR 304

Query: 954 VKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFS 991
                       ++    + D   V     D+ + +++
Sbjct: 305 AGVL--AGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 59.0 bits (141), Expect = 1e-09
 Identities = 22/181 (12%), Positives = 44/181 (24%), Gaps = 26/181 (14%)

Query: 422 SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLC 481
            V  +  +PD  LF         +++    G   +       H   +N I F        
Sbjct: 186 DVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQ---TFTGHESDINAICFFPNGNAF- 241

Query: 482 VITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYD 541
             T  DD T +++D     +   +               ++ + + +   D     W   
Sbjct: 242 -ATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDAL 300

Query: 542 NLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFW 601
                          + +  + DG                             D  +K W
Sbjct: 301 KADRAGVLAGHDNRVSCLGVTDDG---------------------MAVATGSWDSFLKIW 339

Query: 602 D 602
           +
Sbjct: 340 N 340

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 75.2 bits (183), Expect = 5e-15
 Identities = 42/319 (13%), Positives = 93/319 (29%), Gaps = 26/319 (8%)

Query: 580 VQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTND 639
           V F    +  ++A +D +IK WD ++     ++              +        +   
Sbjct: 23  VIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMT 82

Query: 640 NGIKILATSDGIRLLRTFENLAYDASRTSENSKNGDVRSLADVKPRITEESNDKSKVWKL 699
             +      + IR +   ++     S          + S +  K     E      V   
Sbjct: 83  IKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDH---IVSASRDKTIKMWEVQTGYCVKTF 139

Query: 700 TELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKA 759
           T   E  +                       G  I + +++    +W     E  +  + 
Sbjct: 140 TGHREWVRMVR----------------PNQDGTLIASCSNDQTVRVWVVATKECKAELRE 183

Query: 760 TASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASG-GKISLFNMMTFK 818
              V   +          +  +  +           K   +++S S    I ++++ T  
Sbjct: 184 HRHVVECIS-----WAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGM 238

Query: 819 TMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAF 878
            + T +        + FH      I    DD ++++++ +       L  H   +T L F
Sbjct: 239 CLMTLVGHDNWVRGVLFHS-GGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDF 297

Query: 879 SHALNVLVSSGADSQLCVW 897
                 +V+   D  + VW
Sbjct: 298 HKTAPYVVTGSVDQTVKVW 316

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 66.7 bits (161), Expect = 3e-12
 Identities = 26/209 (12%), Positives = 64/209 (30%), Gaps = 23/209 (11%)

Query: 461 IDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHK 520
           +  H   V  + F      +  ++  +D TIKVWD   G  +   +GH   V  +   H 
Sbjct: 13  LSGHRSPVTRVIFHPVFSVM--VSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHS 70

Query: 521 ENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTM--------AYSADGTRTYQGF 572
             +    S  +  K+  +        +          ++        + S D T      
Sbjct: 71  GKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEV 130

Query: 573 R-----------KRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPAS 621
           +           +  + +V+ +       +  +D +++ W + + +    +     +   
Sbjct: 131 QTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVEC 190

Query: 622 PRIRFNKDGCLLAVSTNDNGIKILATSDG 650
             I +  +    ++S         +   G
Sbjct: 191 --ISWAPESSYSSISEATGSETKKSGKPG 217

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 56.3 bits (134), Expect = 8e-09
 Identities = 48/365 (13%), Positives = 104/365 (28%), Gaps = 50/365 (13%)

Query: 492 KVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEA 551
           K W      K Y   GH +PV  V  H   +   + S + D  IK W Y+        + 
Sbjct: 1   KEWIPRPPEK-YALSGHRSPVTRVIFHPVFS--VMVSASEDATIKVWDYETGDFERTLKG 57

Query: 552 PGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTS 611
                  +++   G          ++ +  F   +      G D ++    +        
Sbjct: 58  HTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSI-------- 109

Query: 612 IDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENS 671
                            +G  +  ++ D  IK+         ++TF            N 
Sbjct: 110 ---------------MPNGDHIVSASRDKTIKMWEVQT-GYCVKTFTGHREWVRMVRPNQ 153

Query: 672 KNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSG 731
               + S ++ +         K    +L E     +C                + +    
Sbjct: 154 DGTLIASCSNDQTVRVWVVATKECKAELREHRHVVEC----------------ISWAPES 197

Query: 732 NAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPC 791
           +      +         +      SG    ++  ++W   +G+ +   V   N    V  
Sbjct: 198 SYSSISEATGSETKKSGKPGPFLLSGSRDKTI--KMWDVSTGMCLMTLVGHDNW---VRG 252

Query: 792 FALSKNDSYVMSASG-GKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDS 850
                   +++S +    + +++    + M T        T L FH      +  G  D 
Sbjct: 253 VLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHK-TAPYVVTGSVDQ 311

Query: 851 SIQIY 855
           +++++
Sbjct: 312 TVKVW 316

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 55.1 bits (131), Expect = 2e-08
 Identities = 14/74 (18%), Positives = 30/74 (40%), Gaps = 5/74 (6%)

Query: 422 SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLC 481
            V  V++   G           ++++ Y     ++    ++AH   V  + F      + 
Sbjct: 249 WVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMK---TLNAHEHFVTSLDFHKTAPYV- 304

Query: 482 VITCGDDKTIKVWD 495
            +T   D+T+KVW+
Sbjct: 305 -VTGSVDQTVKVWE 317

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 55.1 bits (131), Expect = 2e-08
 Identities = 37/283 (13%), Positives = 88/283 (31%), Gaps = 22/283 (7%)

Query: 624 IRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKNGDVRSLADVK 683
           + F+    ++  ++ D  IK+     G    RT +                 V+ ++   
Sbjct: 23  VIFHPVFSVMVSASEDATIKVWDYETG-DFERTLK------------GHTDSVQDISFDH 69

Query: 684 PRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIH 743
                 S       KL +       R++   ++     +S +    +G+ I++ + +   
Sbjct: 70  SGKLLASCSADMTIKLWDFQGFECIRTMHGHDH----NVSSVSIMPNGDHIVSASRDKTI 125

Query: 744 LLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMS 803
            +W+ Q      +          +     G ++    + SN +        +K     + 
Sbjct: 126 KMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLI---ASCSNDQTVRVWVVATKECKAELR 182

Query: 804 ASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVK 863
                +   +     + ++      + T      +    +  G  D +I++++V      
Sbjct: 183 EHRHVVECISWAPESSYSSISEATGSET--KKSGKPGPFLLSGSRDKTIKMWDVSTGMCL 240

Query: 864 SKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQK 906
             L GH   + G+ F      ++S   D  L VW        K
Sbjct: 241 MTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMK 283

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 45.1 bits (105), Expect = 3e-05
 Identities = 29/172 (16%), Positives = 66/172 (38%), Gaps = 10/172 (5%)

Query: 831  TFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGA 890
            T + FHP   +++    +D++I++++    + +  LKGH+  +  ++F H+  +L S  A
Sbjct: 21   TRVIFHP-VFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSA 79

Query: 891  DSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTK 950
            D  + +W   G+E  +          + +   +        +   + + E Q        
Sbjct: 80   DMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQ-------- 131

Query: 951  LECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRIN 1002
                           +     + D  L+ +C  D TV V+  A  + +  + 
Sbjct: 132  -TGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELR 182

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 43.2 bits (100), Expect = 1e-04
 Identities = 22/161 (13%), Positives = 48/161 (29%), Gaps = 9/161 (5%)

Query: 863  KSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQS 922
            K  L GH   +T + F    +V+VS+  D+ + VW  +        F +   G T + Q 
Sbjct: 10   KYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYE-----TGDFERTLKGHTDSVQD 64

Query: 923  DTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACF 982
             +     +           +L  F+                  ++  +   +   + +  
Sbjct: 65   ISFDHSGKLLASCSADMTIKLWDFQG----FECIRTMHGHDHNVSSVSIMPNGDHIVSAS 120

Query: 983  LDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAA 1023
             D T+ ++                    V  +    L+ + 
Sbjct: 121  RDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASC 161

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 69.5 bits (168), Expect = 5e-13
 Identities = 31/178 (17%), Positives = 67/178 (37%), Gaps = 6/178 (3%)

Query: 831  TFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVK--SKLKGHSKRITGLAFSHALNVLVSS 888
            +  A++  D   IAI  ++  + IY    ++     +LK H+ ++TG+ ++   N +V+ 
Sbjct: 11   SCHAWNK-DRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTC 69

Query: 889  GADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFET 948
            G D    VW+  G   +    +          +     +               +  FE 
Sbjct: 70   GTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGS---RVISICYFEQ 126

Query: 949  TKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAY 1006
                 V + + +   + +    +  +S L+ A   D    +FSA   ++  R  P+ +
Sbjct: 127  ENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPW 184

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 65.6 bits (158), Expect = 1e-11
 Identities = 25/155 (16%), Positives = 50/155 (32%), Gaps = 3/155 (1%)

Query: 422 SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLC 481
            ++   W+ D +   +  + H V IY   G   V+ H E+  H G V  + ++  + ++ 
Sbjct: 9   PISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVH-ELKEHNGQVTGVDWAPDSNRI- 66

Query: 482 VITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYD 541
            +TCG D+   VW       +           + C     N +     +    I    ++
Sbjct: 67  -VTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFE 125

Query: 542 NLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRS 576
                   +   +   +   S D           S
Sbjct: 126 QENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGS 160

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 47.9 bits (112), Expect = 4e-06
 Identities = 25/357 (7%), Positives = 72/357 (20%), Gaps = 36/357 (10%)

Query: 580 VQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTND 639
             ++  + +     ++  +  ++    + +   +          + +  D   +     D
Sbjct: 13  HAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTD 72

Query: 640 NGIKILATSDGIRLLRTFENLAYD---------ASRTSENSKNGDVRSLADVKPRITEES 690
               +                              +         V S+   +       
Sbjct: 73  RNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWV 132

Query: 691 NDKSKVWKLTELSEPNQCRSLRLPENLRATKISRL--IFTNSGNAILALASNAIHLLWKW 748
               K    + +   +   +  L          R+   +        A       + +  
Sbjct: 133 CKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGE 192

Query: 749 QRTERNSSGKATASVAPQ----------------LWQPPSGIMMTNDVTDSNPEEAVPCF 792
              E +SS      V                   L      + +    +++ P   +   
Sbjct: 193 LMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLP---LLAV 249

Query: 793 ALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSI 852
                 S V +       LF   +     +F          +              D   
Sbjct: 250 TFITESSLVAAGHDCFPVLFTYDSAAGKLSFGGRLDVPKQSS-QRGLTARERFQNLDKKA 308

Query: 853 QIYNVRVDEVKSKLKGHSKRITGLAFSH----ALNVLVSSGADSQLCVWSSDGWEKQ 905
                           H   ++ ++         +   ++G D  + +W     E  
Sbjct: 309 SSEG-SAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLESA 364

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 47.2 bits (110), Expect = 7e-06
 Identities = 32/247 (12%), Positives = 65/247 (26%), Gaps = 27/247 (10%)

Query: 361 PMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPG 420
            +          LL  G+      ++    +E         W        L        G
Sbjct: 143 TVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCG 202

Query: 421 VSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQL 480
             V+ V +S +GS          V +        V       +    +  + F   +   
Sbjct: 203 -WVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATL---ASETLPLLAVTFITESS-- 256

Query: 481 CVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLY 540
            ++  G D    ++   + A +  F G            +          LD K  +   
Sbjct: 257 -LVAAGHDCFPVLFTYDSAAGKLSFGGRLDVPKQS--SQRGLTARERFQNLDKKASSEGS 313

Query: 541 DNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKF 600
              G+ +D        + ++  + G                     ++F   G D  +  
Sbjct: 314 AAAGAGLD-SLHKNSVSQISVLSGG-----------------KAKCSQFCTTGMDGGMSI 355

Query: 601 WDMDSVQ 607
           WD+ S++
Sbjct: 356 WDVRSLE 362

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 41.8 bits (96), Expect = 4e-04
 Identities = 11/53 (20%), Positives = 16/53 (30%), Gaps = 2/53 (3%)

Query: 452 GDEVRQHLEIDAHVGGVNDIAFSHPNKQLC--VITCGDDKTIKVWDATNGAKQ 502
           G           H   V+ I+     K  C    T G D  + +WD  +    
Sbjct: 312 GSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLESA 364

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.9 bits (151), Expect = 7e-11
 Identities = 29/197 (14%), Positives = 50/197 (25%), Gaps = 20/197 (10%)

Query: 461 IDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHK 520
           +  H   V          ++  ++  DD T+KVW A  G       GH   V+S      
Sbjct: 12  LKGHDDHVIT-CLQFCGNRI--VSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDN 68

Query: 521 ENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGT-------------R 567
             I       L                                 G+             +
Sbjct: 69  IIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQ 128

Query: 568 TYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFN 627
                      V        R ++   DF +K WD ++   L ++        +      
Sbjct: 129 CLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGH----TNRVYSLQ 184

Query: 628 KDGCLLAVSTNDNGIKI 644
            DG  +   + D  I++
Sbjct: 185 FDGIHVVSGSLDTSIRV 201

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.4 bits (142), Expect = 8e-10
 Identities = 44/321 (13%), Positives = 93/321 (28%), Gaps = 44/321 (13%)

Query: 327 SFTGHSHSHSHSQAFSTPEDLPKTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLW 386
           +  GH+     SQ          T        +            T  +   ++ +  + 
Sbjct: 52  TLVGHTGGVWSSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVV 111

Query: 387 EVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQI 446
                  L + + +        M   AA+          V  + D  +  V        +
Sbjct: 112 SGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVK-VWDPETETCL 170

Query: 447 YSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFE 506
           ++  G       L+ D                   V++   D +I+VWD   G   +   
Sbjct: 171 HTLQGHTNRVYSLQFDGI----------------HVVSGSLDTSIRVWDVETGNCIHTLT 214

Query: 507 GHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGT 566
           GH++    +          + S   D  +K W           + P +  + +       
Sbjct: 215 GHQSLTSGMELKDN----ILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTC----- 265

Query: 567 RTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDS---VQLLTSIDADGGLPASPR 623
                              KN  + + DD ++K WD+ +   ++ L ++++ G      R
Sbjct: 266 ---------------LQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWR 310

Query: 624 IRFNKDGCLLAVSTNDNGIKI 644
           IR +    + AV + +   + 
Sbjct: 311 IRASNTKLVCAVGSRNGTEET 331

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.3 bits (126), Expect = 8e-08
 Identities = 41/344 (11%), Positives = 105/344 (30%), Gaps = 22/344 (6%)

Query: 566 TRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIR 625
            +  +G     +  +QF    NR ++  DD ++K W   + + L ++    G   S   +
Sbjct: 9   PKVLKGHDDHVITCLQFC--GNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWS--SQ 64

Query: 626 FNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKNGDVRSLADVKPR 685
              +  +   +     +    T + I  L    +         +   +G   +   V   
Sbjct: 65  MRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDI 124

Query: 686 ITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLL 745
            T +                   R +          + ++    +   +  L  +   + 
Sbjct: 125 ETGQCLHVLMGHVAAVRCVQYDGRRVVSGAY---DFMVKVWDPETETCLHTLQGHTNRVY 181

Query: 746 WKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS 805
                     SG    S+  ++W            T +  +       L  ++  V   +
Sbjct: 182 SLQFDGIHVVSGSLDTSI--RVWDVE---TGNCIHTLTGHQSLTSGMELK-DNILVSGNA 235

Query: 806 GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSK 865
              + ++++ T + + T   P    + +     + N +    DD ++++++++  E    
Sbjct: 236 DSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRN 295

Query: 866 LK-----GHSKRITGLAFSHALNVLVSSGAD----SQLCVWSSD 900
           L      G    +  +  S+   V      +    ++L V   D
Sbjct: 296 LVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFD 339

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.7 bits (122), Expect = 3e-07
 Identities = 25/152 (16%), Positives = 49/152 (32%), Gaps = 18/152 (11%)

Query: 397 RNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVR 456
            + +VWD+   +      +    G            ++     +   V+I+    G  ++
Sbjct: 197 TSIRVWDVETGNC-----IHTLTGHQSLTSGMELKDNILVSGNADSTVKIWDIKTGQCLQ 251

Query: 457 QHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIF-----EGHEAP 511
                + H   V  + F+       VIT  DD T+K+WD   G            G    
Sbjct: 252 TLQGPNKHQSAVTCLQFNKN----FVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGV 307

Query: 512 VYSVCPHHKENIQFIFSTALDG--KIKAWLYD 541
           V+ +   +          + +G  + K  + D
Sbjct: 308 VWRIRASN--TKLVCAVGSRNGTEETKLLVLD 337

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.6 bits (106), Expect = 2e-05
 Identities = 51/364 (14%), Positives = 97/364 (26%), Gaps = 61/364 (16%)

Query: 626 FNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKNGDVRSLADVKPR 685
               G  +   ++DN +K+ +   G + LRT                 G V S       
Sbjct: 23  LQFCGNRIVSGSDDNTLKVWSAVTG-KCLRTLV------------GHTGGVWSSQMRDNI 69

Query: 686 ITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLL 745
           I   S D++      E  E               T   R +  +    +       + + 
Sbjct: 70  IISGSTDRTLKVWNAETGECIHTLY-------GHTSTVRCMHLHEKRVVSGSRDATLRVW 122

Query: 746 WKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS 805
                   +      A+V    +     +    D                          
Sbjct: 123 DIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYD-------------------------- 156

Query: 806 GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSK 865
              + +++  T   + T          L F   D   +  G  D+SI++++V        
Sbjct: 157 -FMVKVWDPETETCLHTLQGHTNRVYSLQF---DGIHVVSGSLDTSIRVWDVETGNCIHT 212

Query: 866 LKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTR 925
           L GH    +G+      N+LVS  ADS + +W     +  +              QS   
Sbjct: 213 LTGHQSLTSGMELKD--NILVSGNADSTVKIWDIKTGQCLQTLQ------GPNKHQSAVT 264

Query: 926 VQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPRES---SAPITHATFSCDSQLVYACF 982
                         +  + +++    E ++  V  ES      +     S    +     
Sbjct: 265 CLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGS 324

Query: 983 LDAT 986
            + T
Sbjct: 325 RNGT 328

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.2 bits (92), Expect = 0.001
 Identities = 25/210 (11%), Positives = 57/210 (27%), Gaps = 29/210 (13%)

Query: 834  AFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQ 893
                   N I  G DD+++++++    +    L GH+  +                 D+ 
Sbjct: 22   CLQF-CGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMR-----------DNI 69

Query: 894  LCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLEC 953
            +   S+D   K  N              S  R     ++       +  L +++    +C
Sbjct: 70   IISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQC 129

Query: 954  VKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSS 1013
            +   +   ++              V +   D  V V+          +            
Sbjct: 130  LHVLMGHVAAVRCVQYDGRR----VVSGAYDFMVKVWDPETETCLHTLQG---------- 175

Query: 1014 SNVHPLVIAAHPQEPNEFALGLSDGGVHVF 1043
               H   + +   +      G  D  + V+
Sbjct: 176  ---HTNRVYSLQFDGIHVVSGSLDTSIRVW 202

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 60.6 bits (145), Expect = 5e-10
 Identities = 25/205 (12%), Positives = 55/205 (26%), Gaps = 26/205 (12%)

Query: 462 DAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFE-----------GHEA 510
            AH   +  ++  +       ++C  D  +KVWD      +   +            H  
Sbjct: 11  KAHDADIFSVSACNSF----TVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHV 66

Query: 511 PVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQ 570
            V          +  + +T+  G +  +         D      +       +D  +   
Sbjct: 67  DVLQAIERDAFELCLVATTSFSGDLLFYRITRE----DETKKVIFEKLDLLDSDMKKH-- 120

Query: 571 GFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDM-----DSVQLLTSIDADGGLPASPRIR 625
            F     G        +R +A     +   W       +S  L  +      L  +    
Sbjct: 121 SFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESP 180

Query: 626 FNKDGCLLAVSTNDNGIKILATSDG 650
                   +V  ++ G+     ++G
Sbjct: 181 MTPSQFATSVDISERGLIATGFNNG 205

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 56.8 bits (135), Expect = 8e-09
 Identities = 51/451 (11%), Positives = 111/451 (24%), Gaps = 80/451 (17%)

Query: 501 KQYI-----FEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRW 555
           K +I      + H+A ++SV   +     F  S + DG +K W    L +    +     
Sbjct: 1   KVFIATANAGKAHDADIFSVSACNS----FTVSCSGDGYLKVWDNKLLDNENPKDKSYSH 56

Query: 556 CTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLA-AGDDFSIKFWDMDSV-QLLTSID 613
                                L  ++ D  +   +A       + F+ +    +    I 
Sbjct: 57  FV---------HKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIF 107

Query: 614 ADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKN 673
               L  S   + +        S +      L  +                         
Sbjct: 108 EKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVAT----------------------DVK 145

Query: 674 GDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNA 733
           G       +           S     +   E        +  +  AT +       S   
Sbjct: 146 GTTY----IWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDI-----SERG 196

Query: 734 ILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFA 793
           ++A   N   +      T R                  S I  +N +            A
Sbjct: 197 LIATGFNNGTVQISELSTLRPL---------YNFESQHSMINNSNSIRSVKFSPQGSLLA 247

Query: 794 LSKNDSYVMSASGGKISLFNMM--------TFKTMATFMPPPPAATFLAFHPQDNNIIAI 845
           ++ + +     +  +      +        + +              L+F+      +  
Sbjct: 248 IAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDS-GETLCS 306

Query: 846 GMDDSSIQIYNVRVDEVKSKLKGHSKRI----TGLAFSHALNVLVSSGADSQLCVWSSDG 901
              D  ++ ++V+  E  + L  H   I      LA     + L   G      V+    
Sbjct: 307 AGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPG------VFDVKF 360

Query: 902 WEKQKNRFLQIPTGRT-PTAQSDTRVQFHQD 931
            +K     +      +      D  +++ ++
Sbjct: 361 LKKGWRSGMGADLNESLCCVCLDRSIRWFRE 391

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 49.9 bits (117), Expect = 1e-06
 Identities = 25/189 (13%), Positives = 54/189 (28%), Gaps = 4/189 (2%)

Query: 328 FTGHSHSHSHSQAFSTPEDLPKTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWE 387
                 S+S +  +S   +L  TV   +       S+D     + L+  G N G + + E
Sbjct: 154 HPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISE--RGLIATGFNNGTVQISE 211

Query: 388 VGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIY 447
           + +   L     +   +   +            +       +  G +             
Sbjct: 212 LSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGS 271

Query: 448 SYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEG 507
                   +  L   AH   V  ++F+   +   + + G D  ++ WD     +      
Sbjct: 272 LSVPTHSSQASLGEFAHSSWVMSLSFNDSGE--TLCSAGWDGKLRFWDVKTKERITTLNM 329

Query: 508 HEAPVYSVC 516
           H   +    
Sbjct: 330 HCDDIEIEE 338

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 41.8 bits (96), Expect = 4e-04
 Identities = 14/154 (9%), Positives = 39/154 (25%), Gaps = 20/154 (12%)

Query: 464 HVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKE-- 521
           HV  +  I        L   T      +  +  T   +       +  +           
Sbjct: 65  HVDVLQAIERDAFELCLVA-TTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFW 123

Query: 522 -----------NIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQ 570
                          + +T + G    W +         +         + + +   T +
Sbjct: 124 ALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFA-----DESNSLTLNWSPTLELQGTVE 178

Query: 571 GFRKRSLGVVQFDTTKNRFLAAG-DDFSIKFWDM 603
                S      D ++   +A G ++ +++  ++
Sbjct: 179 SPMTPSQFATSVDISERGLIATGFNNGTVQISEL 212

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 59.5 bits (142), Expect = 8e-10
 Identities = 41/354 (11%), Positives = 104/354 (29%), Gaps = 28/354 (7%)

Query: 568 TYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFN 627
           T +G     +  +QF+   N  +   DD  I+ +D  + + L  +    G   +  +++ 
Sbjct: 7   TLRGHMTSVITCLQFE--DNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWA--LKYA 62

Query: 628 KDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSEN---------SKNGDVRS 678
             G L++ ST+               +    N         E          S++  +  
Sbjct: 63  HGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLH- 121

Query: 679 LADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALA 738
           +  +    +   + +   + L   +       + +     A+  +     N   +     
Sbjct: 122 VWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDN 181

Query: 739 SNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVT-----------DSNPEE 787
           +  +  + + +     S             +    I  + D T               + 
Sbjct: 182 TLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQG 241

Query: 788 AVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGM 847
                 L +     + ++    S+           F       + +      +NI+  G 
Sbjct: 242 HTALVGLLRLSDKFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGS 301

Query: 848 DDSSIQIYNVRVDE-VKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSD 900
           ++    IYN+R  + V + +   + +I  + F     ++ +   D Q  +   D
Sbjct: 302 ENQ-FNIYNLRSGKLVHANILKDADQIWSVNFKGK-TLVAAVEKDGQSFLEILD 353

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 59.5 bits (142), Expect = 9e-10
 Identities = 10/79 (12%), Positives = 27/79 (34%), Gaps = 6/79 (7%)

Query: 464 HVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAK-QYIFEGHEAPVYSVCPHHKEN 522
           H   ++ I   + +  +  +  G +    +++  +G             ++SV    K  
Sbjct: 280 HHTNLSAITTFYVSDNI--LVSGSENQFNIYNLRSGKLVHANILKDADQIWSVNFKGK-- 335

Query: 523 IQFIFSTALDGKIKAWLYD 541
              + +   DG+    + D
Sbjct: 336 -TLVAAVEKDGQSFLEILD 353

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 57.6 bits (137), Expect = 3e-09
 Identities = 43/401 (10%), Positives = 94/401 (23%), Gaps = 54/401 (13%)

Query: 455 VRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYS 514
           V Q   +  H+  V        N    VIT  DDK I+V+D+ N        GH+  V++
Sbjct: 2   VPQRTTLRGHMTSVITCLQFEDNY---VITGADDKMIRVYDSINKKFLLQLSGHDGGVWA 58

Query: 515 VCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRK 574
           +   H      + S               GS                             
Sbjct: 59  LKYAHG---GILVS---------------GSTDRTVRVWDIKKGCCTHVFEGHNSTVRCL 100

Query: 575 RSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLA 634
                +         +    D ++  W +     +     +   P            +  
Sbjct: 101 D----IVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGV 156

Query: 635 VSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKNGDVRSLADVKPRITEESNDKS 694
           +  +   ++ ++    I +  +     YD +    +        +          +    
Sbjct: 157 LRGHMASVRTVSGHGNIVVSGS-----YDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDH 211

Query: 695 KVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERN 754
           +  +    S     R   L                                         
Sbjct: 212 ERKRCISASMDTTIRIWDLENGEL---------------------MYTLQGHTALVGLLR 250

Query: 755 SSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNM 814
            S K   S A             +     +            +D+ ++S S  + +++N+
Sbjct: 251 LSDKFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGSENQFNIYNL 310

Query: 815 MTFKTMATFMPPPPAATF-LAFHPQDNNIIAIGMDDSSIQI 854
            + K +   +       + + F      ++A    D    +
Sbjct: 311 RSGKLVHANILKDADQIWSVNFKG--KTLVAAVEKDGQSFL 349

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 45.7 bits (106), Expect = 2e-05
 Identities = 25/150 (16%), Positives = 48/150 (32%), Gaps = 6/150 (4%)

Query: 839 DNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS 898
           ++N +  G DD  I++Y+    +   +L GH   +  L ++H   +LVS   D  + VW 
Sbjct: 22  EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHG-GILVSGSTDRTVRVWD 80

Query: 899 SDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWV 958
                          T R          ++   +       +  L +++  K   V    
Sbjct: 81  IKKGCCTHVFEGHNSTVRCLDIV-----EYKNIKYIVTGSRDNTLHVWKLPKESSVPDHG 135

Query: 959 PRESSAPITHATFSCDSQLVYACFLDATVC 988
                  + H        +       A+V 
Sbjct: 136 EEHDYPLVFHTPEENPYFVGVLRGHMASVR 165

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.2 bits (136), Expect = 3e-09
 Identities = 28/206 (13%), Positives = 58/206 (28%), Gaps = 22/206 (10%)

Query: 456 RQHLE-IDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYS 514
           R  L+ I         +     + Q  +++   D TIK+WD      + I  GH   V  
Sbjct: 2   RHSLQRIHCRSETSKGVYCLQYDDQK-IVSGLRDNTIKIWDKNTLECKRILTGHTGSVLC 60

Query: 515 VCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTR------- 567
           +    +  I     + +                  EA              ++       
Sbjct: 61  LQYDERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVW 120

Query: 568 ---------TYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGL 618
                      +        V   D      ++A  D +IK W+  + + + +++     
Sbjct: 121 DMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHK-- 178

Query: 619 PASPRIRFNKDGCLLAVSTNDNGIKI 644
                        L+   ++DN I++
Sbjct: 179 --RGIACLQYRDRLVVSGSSDNTIRL 202

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.7 bits (114), Expect = 2e-06
 Identities = 34/136 (25%), Positives = 53/136 (38%), Gaps = 18/136 (13%)

Query: 467 GVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFI 526
           G          +   V++   D TI++WD   GA   + EGH      +    + + + I
Sbjct: 176 GHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGH----EELVRCIRFDNKRI 231

Query: 527 FSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTK 586
            S A DGKIK W  D + +       G  C          RT      R   + QFD  +
Sbjct: 232 VSGAYDGKIKVW--DLVAALDPRAPAGTLCL---------RTLVEHSGRVFRL-QFD--E 277

Query: 587 NRFLAAGDDFSIKFWD 602
            + +++  D +I  WD
Sbjct: 278 FQIVSSSHDDTILIWD 293

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.2 bits (110), Expect = 5e-06
 Identities = 25/131 (19%), Positives = 42/131 (32%), Gaps = 15/131 (11%)

Query: 777 TNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAF 835
           T +   +          L   D  V+S S    I L+++     +            +  
Sbjct: 167 TCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEE---LVRC 223

Query: 836 HPQDNNIIAIGMDDSSIQIYNVRVDEVKSK---------LKGHSKRITGLAFSHALNVLV 886
              DN  I  G  D  I+++++                 L  HS R+  L F      +V
Sbjct: 224 IRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDE--FQIV 281

Query: 887 SSGADSQLCVW 897
           SS  D  + +W
Sbjct: 282 SSSHDDTILIW 292

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.1 bits (97), Expect = 2e-04
 Identities = 15/102 (14%), Positives = 31/102 (30%), Gaps = 15/102 (14%)

Query: 400 KVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHL 459
           ++WD+   +      L    G          D            ++++      + R   
Sbjct: 201 RLWDIECGAC-----LRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPA 255

Query: 460 E------IDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWD 495
                  +  H G V  + F    +   +++   D TI +WD
Sbjct: 256 GTLCLRTLVEHSGRVFRLQF-DEFQ---IVSSSHDDTILIWD 293

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.5 bits (137), Expect = 3e-09
 Identities = 18/117 (15%), Positives = 40/117 (34%), Gaps = 9/117 (7%)

Query: 422 SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLC 481
            +  + + P G    V      V++   +         ++  H   V  + F++  K   
Sbjct: 226 QIFSLGYCPTGEWLAVGMESSNVEVLHVN----KPDKYQLHLHESCVLSLKFAYCGKWF- 280

Query: 482 VITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAW 538
            ++ G D  +  W    GA  +      + V S      +  ++I + + D K   +
Sbjct: 281 -VSTGKDNLLNAWRTPYGASIFQS-KESSSVLSCDISVDD--KYIVTGSGDKKATVY 333

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.3 bits (126), Expect = 7e-08
 Identities = 18/281 (6%), Positives = 58/281 (20%), Gaps = 9/281 (3%)

Query: 624 IRFNKDGCLLAVSTNDNGIKI--LATSDGIRLLRTFENLAYDASRTS-ENSKNGDVRSLA 680
           +  +     +  +     +K+  ++       +   + L  D    S +   +G    + 
Sbjct: 57  VTISNPTRHVY-TGGKGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVG 115

Query: 681 D---VKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILAL 737
                       +       +LT  +      ++     +  +  S             L
Sbjct: 116 GEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTL 175

Query: 738 ASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKN 797
                         + ++ G    +           +     +   +    +        
Sbjct: 176 VRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPT 235

Query: 798 DSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNV 857
             ++             +                 L F             D+ +  +  
Sbjct: 236 GEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAY-CGKWFVSTGKDNLLNAWRT 294

Query: 858 RVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS 898
                  +    S  +     S     +V+   D +  V+ 
Sbjct: 295 PYGASIFQS-KESSSVLSCDISVDDKYIVTGSGDKKATVYE 334

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.1 bits (123), Expect = 2e-07
 Identities = 26/267 (9%), Positives = 67/267 (25%), Gaps = 31/267 (11%)

Query: 400 KVWDL--GACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQ 457
           KVWD+       P+      +    +      PDG    V      + I+         +
Sbjct: 75  KVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIK 134

Query: 458 HLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCP 517
                +                    + G+     + +     +  + +       + C 
Sbjct: 135 AELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHN-----QTLVRQFQGHTDGASCI 189

Query: 518 HHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSL 577
               +   +++  LD  +++W          ++       ++ Y   G     G    ++
Sbjct: 190 DISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTS-QIFSLGYCPTGEWLAVGMESSNV 248

Query: 578 GV--------------------VQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGG 617
            V                    ++F      F++ G D  +  W       +        
Sbjct: 249 EVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKESSS 308

Query: 618 LPASPRIRFNKDGCLLAVSTNDNGIKI 644
           + +      + D   +   + D    +
Sbjct: 309 VLS---CDISVDDKYIVTGSGDKKATV 332

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.6 bits (119), Expect = 6e-07
 Identities = 11/70 (15%), Positives = 24/70 (34%), Gaps = 6/70 (8%)

Query: 426 VIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITC 485
           + ++  G  F      +++  +    G  + Q          V     S  +K +  +T 
Sbjct: 271 LKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQS----KESSSVLSCDISVDDKYI--VTG 324

Query: 486 GDDKTIKVWD 495
             DK   V++
Sbjct: 325 SGDKKATVYE 334

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.0 bits (89), Expect = 0.002
 Identities = 35/312 (11%), Positives = 68/312 (21%), Gaps = 43/312 (13%)

Query: 616 GGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKNGD 675
           G  PA        DG +  V    + +         R + T  +                
Sbjct: 8   GSKPAYS-FHVTADGQMQPVPFPPDALIGPGIPRHARQINTLNH-------------GEV 53

Query: 676 VRSLA---DVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGN 732
           V ++      +  +        KVW ++     +    L          I        G 
Sbjct: 54  VCAVTISNPTR-HVYTGGKGCVKVWDISHPGNKSPVSQLDCLNRDNY--IRSCKLLPDGC 110

Query: 733 AILALASN--------------------AIHLLWKWQRTERNSSGKATASVAPQLWQPPS 772
             L +                              +       S    +  +        
Sbjct: 111 -TLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWD 169

Query: 773 GIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATF 832
               T         +   C  +S + + + +           +                 
Sbjct: 170 LHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFS 229

Query: 833 LAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADS 892
           L + P    +      +SS           K +L  H   +  L F++     VS+G D+
Sbjct: 230 LGYCPTGEWLA--VGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDN 287

Query: 893 QLCVWSSDGWEK 904
            L  W +     
Sbjct: 288 LLNAWRTPYGAS 299

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.3 bits (87), Expect = 0.004
 Identities = 17/139 (12%), Positives = 34/139 (24%), Gaps = 27/139 (19%)

Query: 464 HVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENI 523
               +  + +    + L V       +       N   +Y    HE+ V S+   +    
Sbjct: 223 FTSQIFSLGYCPTGEWLAVGME---SSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGK- 278

Query: 524 QFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFD 583
            +  ST  D  + AW     G+ +          +   S D                   
Sbjct: 279 -WFVSTGKDNLLNAWRTPY-GASIFQSKESSSVLSCDISVDD------------------ 318

Query: 584 TTKNRFLAAGDDFSIKFWD 602
                 +    D     ++
Sbjct: 319 ---KYIVTGSGDKKATVYE 334

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 57.4 bits (137), Expect = 3e-09
 Identities = 37/351 (10%), Positives = 86/351 (24%), Gaps = 19/351 (5%)

Query: 580 VQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPR-IRFNKDGCLLAVS-T 637
                     +      ++   D+ S  +  S          P       D     V   
Sbjct: 2   PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDK--FGPGTAMMAPDNRTAYVLNN 59

Query: 638 NDNGIKILATSDGIRLLRTFENLAYDASRTSE-----NSKNGDVRSLADVKPRITEESND 692
           +   I  +             +        S      +    +V +  +   R+ +    
Sbjct: 60  HYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVV 119

Query: 693 KSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTE 752
           K    ++   ++  + + +R     R   +  +   + G+  +A        +   + T 
Sbjct: 120 KPPRLEVFSTADGLEAKPVRTFPMPRQ--VYLMRAADDGSLYVAGPDIYKMDVKTGKYTV 177

Query: 753 RNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGK-ISL 811
                                   +     S             +     +A        
Sbjct: 178 ALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSML---YTIARFKDDKQDPATADLLYGYLS 234

Query: 812 FNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSK 871
            ++ T KT            F       +         + +  Y+++  ++         
Sbjct: 235 VDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIY-GVLNRLAKYDLKQRKLIKAAN-LDH 292

Query: 872 RITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQS 922
               +AF    + L   G  + L V++ D  EK KN  +++P G   T   
Sbjct: 293 TYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKN--IKLPGGDMSTTTP 341

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 49.4 bits (116), Expect = 2e-06
 Identities = 35/407 (8%), Positives = 87/407 (21%), Gaps = 82/407 (20%)

Query: 471 IAFSHPNKQLCVITCGDDKTIKVWDATNGA-KQYIFEGHEAPVYSVCPHHKENIQFIFST 529
            A    ++ +  I       + V D  +    +      +    +          ++   
Sbjct: 2   PALKAGHEYM--IVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYV-LN 58

Query: 530 ALDGKIKAW------LYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFD 583
              G I            +          GR   + A S DG   Y              
Sbjct: 59  NHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVY---------ATVNP 109

Query: 584 TTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIK 643
           T +           ++ +          +                             + 
Sbjct: 110 TQRLNDHYVVKPPRLEVFSTADGLEAKPV---------------------RTFPMPRQVY 148

Query: 644 ILATSDGIRLLRTFENLAYDASRTSENSKNGDVRSLADVKPRITEESNDKSKVWKLTELS 703
           ++  +D   L     ++     +T + +    +R+      R    + D    W      
Sbjct: 149 LMRAADDGSLYVAGPDIYKMDVKTGKYTVALPLRN----WNRKGYSAPDVLYFWPHQSPR 204

Query: 704 EPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASV 763
                             +  +          A A                         
Sbjct: 205 HEFSM-------------LYTIARFKDDKQDPATADLLYGY------------------- 232

Query: 764 APQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATF 823
                   +G   T+    ++  E       S  D   +     +++ +++   K +   
Sbjct: 233 --LSVDLKTG--KTHTQEFADLTELYFTGLRSPKDPNQIYGVLNRLAKYDLKQRKLIKAA 288

Query: 824 MPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHS 870
                    +AF     + + +G   + + ++N    E    +K   
Sbjct: 289 -NLDHTYYCVAFDK-KGDKLYLGGTFNDLAVFNPDTLEKVKNIKLPG 333

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 48.2 bits (113), Expect = 3e-06
 Identities = 28/278 (10%), Positives = 64/278 (23%), Gaps = 49/278 (17%)

Query: 358 GSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVK 417
           G S  S    P     +    N           +   +    +V+               
Sbjct: 88  GRSMYSFAISP-DGKEVYATVNPTQRLNDHYVVKPPRL----EVFSTADGLEAKPVRTFP 142

Query: 418 DPGVSVNRVIWSPDGSLFGVAYSRHIVQIYS------YHGGDEVRQ-----------HLE 460
            P   V  +  + DGSL+      + + + +          +  R+             +
Sbjct: 143 MPR-QVYLMRAADDGSLYVAGPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQ 201

Query: 461 IDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWD-ATNGAKQYIFEGHEAPVYSVCPHH 519
              H   +        + +    T          D  T       F       ++     
Sbjct: 202 SPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSP 261

Query: 520 KENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGV 579
           K+  Q         ++  +        +           +A+   G + Y          
Sbjct: 262 KDPNQIYGV---LNRLAKYDLKQ-RKLIKAANLDHTYYCVAFDKKGDKLY---------- 307

Query: 580 VQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGG 617
                        G    +  ++ D+++ + +I   GG
Sbjct: 308 -----------LGGTFNDLAVFNPDTLEKVKNIKLPGG 334

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 47.0 bits (110), Expect = 6e-06
 Identities = 31/272 (11%), Positives = 61/272 (22%), Gaps = 17/272 (6%)

Query: 400 KVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSR----HIVQIYSYHGGDEV 455
            V D+   S  +  + V          + +PD     V  +     + + + +       
Sbjct: 21  HVVDVA--SDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHA 78

Query: 456 RQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSV 515
                       +   A S   K++        +    +       +            V
Sbjct: 79  NLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPV 138

Query: 516 CPHHKENIQFIFSTALDGKI------KAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTY 569
                    ++   A DG +         +    G          W      + D    +
Sbjct: 139 RTFPMPRQVYLMRAADDGSLYVAGPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFW 198

Query: 570 QGFRKRSLGV-----VQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRI 624
                R          +F   K     A   +     D+ + +  T   AD        +
Sbjct: 199 PHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGL 258

Query: 625 RFNKDGCLLAVSTNDNGIKILATSDGIRLLRT 656
           R  KD   +    N      L     I+    
Sbjct: 259 RSPKDPNQIYGVLNRLAKYDLKQRKLIKAANL 290

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 41.3 bits (95), Expect = 5e-04
 Identities = 17/190 (8%), Positives = 42/190 (22%), Gaps = 20/190 (10%)

Query: 321 VNVLPVSFTGHSHSHSHSQAFSTPEDLPKTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNV 380
           V ++  +  G  +           +      T  L   +        P         +  
Sbjct: 147 VYLMRAADDGSLYVAGPDIYKMDVKTG--KYTVALPLRNWNRKGYSAPDVLYFWPHQSPR 204

Query: 381 GDIGLWEVGSRERLVLRNF---------KVWDLGACSMPLQAALVKDPGVSVNRVIWSPD 431
            +  +    +R +   ++             DL       Q             +    D
Sbjct: 205 HEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELY-FTGLRSPKD 263

Query: 432 GSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTI 491
            +   +    + +  Y       ++              +AF     +L     G    +
Sbjct: 264 PNQ--IYGVLNRLAKYDLKQRKLIKAAN----LDHTYYCVAFDKKGDKL--YLGGTFNDL 315

Query: 492 KVWDATNGAK 501
            V++     K
Sbjct: 316 AVFNPDTLEK 325

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 56.1 bits (133), Expect = 7e-09
 Identities = 15/101 (14%), Positives = 31/101 (30%), Gaps = 6/101 (5%)

Query: 464 HVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIF-EGHEAPVYSVCPHHKEN 522
           H   +  ++ S   K L   +   +  I  WD + G    +F + H   +  +    K +
Sbjct: 11  HNKAITALSSSADGKTL--FSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGD 68

Query: 523 IQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSA 563
           +  +     D  +K       G         +  +     A
Sbjct: 69  LFTVSW---DDHLKVVPAGGSGVDSSKAVANKLSSQPLGLA 106

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 48.1 bits (112), Expect = 3e-06
 Identities = 32/279 (11%), Positives = 71/279 (25%), Gaps = 4/279 (1%)

Query: 624 IRFNKDGCLLAVSTNDNGIKI--LATSDGIRLLRTFENLAYDASRTSENSKNGDVRSLAD 681
           +  + DG  L  +  +  I    ++T    R+            +T+       V     
Sbjct: 18  LSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDH 77

Query: 682 VKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNA 741
           +K      S   S      +LS      ++    ++      + I   S   +  +  + 
Sbjct: 78  LKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISY 137

Query: 742 IHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYV 801
                     ++  +     S         + +     +       +V            
Sbjct: 138 NSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVAT 197

Query: 802 MSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDE 861
             +                        A         DN  +A G  D+S+ ++N+    
Sbjct: 198 DQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPS 257

Query: 862 VKSKL--KGHSKRITGLAFSHALNVLVSSGADSQLCVWS 898
               +    H+              +VS+G DS +  W+
Sbjct: 258 DHPIIIKGAHAMSSVNSVIWLNETTIVSAGQDSNIKFWN 296

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 42.3 bits (97), Expect = 2e-04
 Identities = 12/68 (17%), Positives = 28/68 (41%), Gaps = 3/68 (4%)

Query: 428 WSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGD 487
           WSPD          + V +++ +   +    ++    +  VN + + +      +++ G 
Sbjct: 232 WSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNET---TIVSAGQ 288

Query: 488 DKTIKVWD 495
           D  IK W+
Sbjct: 289 DSNIKFWN 296

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 42.3 bits (97), Expect = 2e-04
 Identities = 13/66 (19%), Positives = 20/66 (30%), Gaps = 4/66 (6%)

Query: 475 HPNKQLCVITCGDDKTIKVWDATNGAKQ--YIFEGHEAPVYSVCPHHKENIQFIFSTALD 532
                + + T   D ++ VW+    +     I   H     +      E    I S   D
Sbjct: 232 WSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNET--TIVSAGQD 289

Query: 533 GKIKAW 538
             IK W
Sbjct: 290 SNIKFW 295

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 41.9 bits (96), Expect = 3e-04
 Identities = 11/46 (23%), Positives = 18/46 (39%)

Query: 861 EVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQK 906
            +     GH+K IT L+ S     L S+ A+  +  W        +
Sbjct: 3   SIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNR 48

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 56.0 bits (133), Expect = 1e-08
 Identities = 36/350 (10%), Positives = 99/350 (28%), Gaps = 27/350 (7%)

Query: 586 KNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVS-TNDNGIKI 644
           ++  LA      +   D + + +   I      P          G +   +      +  
Sbjct: 1   RDYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVK 60

Query: 645 LATSDGIRLLRTFENLAYDASRTSENSK-NGDVRSLA------DVKPRITEESNDKSKVW 697
           +    G  L R   +   +  ++   +  + D ++LA       ++    E    +  ++
Sbjct: 61  IDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALY 120

Query: 698 KLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSG 757
               LS      + R    L   +    ++    +  +        +  K  ++    + 
Sbjct: 121 DAETLSRRKAFEAPRQITMLAWARDGSKLYGLGRDLHVMDPEAGTLVEDKPIQSWEAET- 179

Query: 758 KATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTF 817
                     +  P  + + N    S         A    D    +A    +   ++ T 
Sbjct: 180 ----------YAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETG 229

Query: 818 KTMAT-FMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGL 876
           +                A +P            + ++ +++  +    ++         +
Sbjct: 230 EMAMREVRIMDVFYFSTAVNPAKT---RAFGAYNVLESFDLEKNASIKRV-PLPHSYYSV 285

Query: 877 AFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRV 926
             S   + +   GA   L  + ++  EK+    + +P G    + +  R+
Sbjct: 286 NVSTDGSTVWLGGALGDLAAYDAETLEKKGQ--VDLP-GNASMSLASVRL 332

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 45.6 bits (106), Expect = 2e-05
 Identities = 34/399 (8%), Positives = 85/399 (21%), Gaps = 77/399 (19%)

Query: 482 VITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYD 541
           ++       + V D    A   +    +A                               
Sbjct: 4   ILAPARPDKLVVIDTEKMAVDKVITIADA------------------------------- 32

Query: 542 NLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFW 601
                      G        +  G   Y                           S+   
Sbjct: 33  -----------GPTPMVPMVAPGGRIAY--------------------ATVNKSESLVKI 61

Query: 602 DMDSVQLLTSIDADGGLPASPR---IRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFE 658
           D+ + + L  ID                + DG  LA+  +   +++         +  ++
Sbjct: 62  DLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYD 121

Query: 659 NLAYDASRTSENSKNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLR 718
                  +  E  +   + + A    ++     D   +                +     
Sbjct: 122 AETLSRRKAFEAPRQITMLAWARDGSKLYGLGRDLHVMDPEA----GTLVEDKPIQSWEA 177

Query: 719 ATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTN 778
            T     +         +          +      +                 +G M   
Sbjct: 178 ETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADP---TAYRTGLLTMDLETGEMAMR 234

Query: 779 DVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQ 838
           +V   +          +K  ++        +  F++    ++    P P +   +     
Sbjct: 235 EVRIMDVFYFSTAVNPAKTRAFGAY---NVLESFDLEKNASIKRV-PLPHSYYSVNVST- 289

Query: 839 DNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLA 877
           D + + +G     +  Y+    E K ++         LA
Sbjct: 290 DGSTVWLGGALGDLAAYDAETLEKKGQVDLPGNASMSLA 328

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 41.3 bits (95), Expect = 4e-04
 Identities = 29/291 (9%), Positives = 71/291 (24%), Gaps = 38/291 (13%)

Query: 350 TVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFK----VWDLG 405
            ++    +  S       P  +TL +  + V            R+ L + +         
Sbjct: 73  DLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFE 132

Query: 406 ACSMPLQAALVKDPG---VSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEID 462
           A       A  +D          +      +   V            +   +V       
Sbjct: 133 APRQITMLAWARDGSKLYGLGRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQH 192

Query: 463 AHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYI-FEGHEAPVYSVCPHHKE 521
              G +    ++                +   D   G          +   +S   +  +
Sbjct: 193 ESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAK 252

Query: 522 NIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQ 581
              F         ++++  +   + +          ++  S DG+  +            
Sbjct: 253 TRAFGA----YNVLESFDLEK-NASIKRVPLPHSYYSVNVSTDGSTVW------------ 295

Query: 582 FDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLP---ASPRIRFNKD 629
                      G    +  +D ++++    +D  G      AS R+ F +D
Sbjct: 296 ---------LGGALGDLAAYDAETLEKKGQVDLPGNASMSLASVRL-FTRD 336

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 40.2 bits (92), Expect = 0.001
 Identities = 21/299 (7%), Positives = 69/299 (23%), Gaps = 49/299 (16%)

Query: 400 KVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSR-HIVQIYSYHGGDEVRQH 458
            V D    ++  +   + D G +    + +P G +     ++   +       G+ + + 
Sbjct: 14  VVIDTEKMAV-DKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRI 72

Query: 459 LEIDAHVGGVNDIAFS-HPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCP 517
                     +    +  P+ +   I     +           +  +++           
Sbjct: 73  DLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFE 132

Query: 518 HHKENIQFIFST-----ALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTY--- 569
             ++     ++         G+    +    G+ V+ +    W        D    +   
Sbjct: 133 APRQITMLAWARDGSKLYGLGRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQH 192

Query: 570 QGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTS------------------ 611
           +     +          +          +   D+++ ++                     
Sbjct: 193 ESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAK 252

Query: 612 ------------IDADGG-------LPASPR-IRFNKDGCLLAVSTNDNGIKILATSDG 650
                        D +         LP S   +  + DG  + +      +        
Sbjct: 253 TRAFGAYNVLESFDLEKNASIKRVPLPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETL 311

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 38.2 bits (87), Expect = 0.004
 Identities = 15/174 (8%), Positives = 47/174 (27%), Gaps = 9/174 (5%)

Query: 331 HSHSHSHSQAFSTPEDLPKTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGS 390
            S  +   +     +    T+       S        P    +     + G +      +
Sbjct: 146 GSKLYGLGRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTA 205

Query: 391 RERLVLRNFKVWDLGACSMPLQAALVK---DPGVSVNRVIWSPDGSLFGVAYSRHIVQIY 447
           R+ +   +   +  G  +M L+   +       + V     + + +      + ++++ +
Sbjct: 206 RKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGAYNVLESF 265

Query: 448 SYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAK 501
                  +++             +  S     +     G    +  +DA    K
Sbjct: 266 DLEKNASIKRVP----LPHSYYSVNVSTDGSTV--WLGGALGDLAAYDAETLEK 313

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 54.9 bits (130), Expect = 3e-08
 Identities = 29/329 (8%), Positives = 83/329 (25%), Gaps = 73/329 (22%)

Query: 363 SMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVS 422
            +   P +  LL             + S +  +     V+     +  +           
Sbjct: 16  DIKIIPSKSLLL-------------ITSWDGSL----TVYKFDIQAKNVDLLQSLRYKHP 58

Query: 423 VNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEI--------------------- 461
           +    +  +  L     +     +     G    Q L                       
Sbjct: 59  LLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAA 118

Query: 462 ------------------------DAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDAT 497
                                   +++   V +  F+       +I   ++  ++ +   
Sbjct: 119 SWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLP 178

Query: 498 NGAKQYIFEGHEAPVYSVCPH--HKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRW 555
                          Y +       +  +    +++DG++    +D+ G   +     + 
Sbjct: 179 LCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYN---SSKR 235

Query: 556 CTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDAD 615
                +  +   T   +   S   ++F         AG D  I  W++ + + + +    
Sbjct: 236 FAFRCHRLNLKDTNLAYPVNS---IEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFA-- 290

Query: 616 GGLPASPRIRFNKDGCLLAVSTNDNGIKI 644
                   ++      +L ++T+D+  K 
Sbjct: 291 -KFNEDSVVKIACSDNILCLATSDDTFKT 318

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 54.5 bits (129), Expect = 3e-08
 Identities = 40/321 (12%), Positives = 87/321 (27%), Gaps = 49/321 (15%)

Query: 457 QHLEI-DAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFE---GHEAPV 512
           Q ++I  A    ++DI        L  +    D ++ V+     AK         ++ P+
Sbjct: 2   QIVQIEQAPKDYISDIKIIPSKSLL--LITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPL 59

Query: 513 YSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGF 572
                    ++Q    T     +K  L  +   +                    +     
Sbjct: 60  LCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAAS 119

Query: 573 RKRSLGVVQFDTTK---------------------------NRFLAAGDDFSIKFWDMDS 605
               + V+                                 +R +   ++  ++++ +  
Sbjct: 120 WDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPL 179

Query: 606 VQLLTSIDADGGLPASPRIR--FNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYD 663
            +       + GL    R      K+    A S+ D  + +    D      + +  A+ 
Sbjct: 180 CEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFR 239

Query: 664 ASRTSENSKN--GDVRSLA--DVKPRITEESNDKS-KVWKLTELSEPNQCRSLRLPENLR 718
             R +    N    V S+        +    +D     W L            ++    +
Sbjct: 240 CHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRK--------KIKNFAK 291

Query: 719 ATKISRLIFTNSGNAILALAS 739
             + S +    S N IL LA+
Sbjct: 292 FNEDSVVKIACSDN-ILCLAT 311

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 53.0 bits (125), Expect = 9e-08
 Identities = 37/322 (11%), Positives = 82/322 (25%), Gaps = 53/322 (16%)

Query: 359 SSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKD 418
           +    + + P    +                  +   +R     D G   +P        
Sbjct: 18  NFTTHLSYDPTTNAIA-------------YPCGKSAFVR---CLDDGDSKVPPVVQFTGH 61

Query: 419 PGVSVNRVIWSP--DGSLFGVAYSRHIVQIYSYHGGDEVRQHL-----EIDAHVGGVNDI 471
               V  V +SP               V ++ +    E          E     G ++DI
Sbjct: 62  GSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDI 121

Query: 472 AFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTAL 531
           ++    ++LCV+  G D         +G       GH   + +        ++ +     
Sbjct: 122 SWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDD 181

Query: 532 DGKIKAWLYDNLGSRVDYEAPG--RWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTK--- 586
              +         S  D        +   + +S D                    +    
Sbjct: 182 GSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFL 241

Query: 587 ----------------------NRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRI 624
                                  +F   G D +I+ WD+ + + +     D     + ++
Sbjct: 242 KYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQV 301

Query: 625 RF--NKDGCLLAVSTNDNGIKI 644
                 +G ++++S  D  +  
Sbjct: 302 GVVATGNGRIISLS-LDGTLNF 322

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 46.8 bits (109), Expect = 8e-06
 Identities = 16/60 (26%), Positives = 25/60 (41%), Gaps = 3/60 (5%)

Query: 481 CVITCGDDKTIKVWDATNGA--KQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAW 538
              T G D TI+VWD T     +++  +  +     V      N   I S +LDG +  +
Sbjct: 265 KFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGN-GRIISLSLDGTLNFY 323

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 44.9 bits (104), Expect = 3e-05
 Identities = 22/131 (16%), Positives = 48/131 (36%), Gaps = 10/131 (7%)

Query: 819 TMATFMPPPPA-----ATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVK--SKLKGH-S 870
           ++   +PP P+      T L++ P  N I       + ++  +    +V    +  GH S
Sbjct: 4   SLKEIIPPQPSTQRNFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGS 63

Query: 871 KRITGLAFSHALN--VLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQF 928
             +T + FS       L S     ++ VW     ++  +  + + +     A   + + +
Sbjct: 64  SVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISW 123

Query: 929 HQDQIHFLVVH 939
             +     VV 
Sbjct: 124 DFEGRRLCVVG 134

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 41.8 bits (96), Expect = 3e-04
 Identities = 46/327 (14%), Positives = 82/327 (25%), Gaps = 40/327 (12%)

Query: 289 PTNPSVDYPSGDSDHLSKRTRPIGISDEINLPVNVLPVSFTGHSHSHSHSQAFSTPED-- 346
           PT  ++ YP G S  +    R +   D    PV    V FTGH  S   +  FS  +   
Sbjct: 27  PTTNAIAYPCGKSAFV----RCLDDGDSKVPPV----VQFTGHGSSVVTTVKFSPIKGSQ 78

Query: 347 ------LPKTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRE--RLVLRN 398
                     V           +     V+    ++   + DI     G R       R+
Sbjct: 79  YLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRD 138

Query: 399 FKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQH 458
                +   S      +           +                V  Y           
Sbjct: 139 NFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASD 198

Query: 459 LEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPH 518
                    V D+ FS  + +  +    D K       +    +YI +  E     +   
Sbjct: 199 RTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFAL 258

Query: 519 HKENIQFIFSTALDGKIKAWLYDN--LGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRS 576
              + Q   +   D  I+ W         +   +        +   A G           
Sbjct: 259 SWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATG----------- 307

Query: 577 LGVVQFDTTKNRFLAAGDDFSIKFWDM 603
                      R ++   D ++ F+++
Sbjct: 308 ---------NGRIISLSLDGTLNFYEL 325

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 40.7 bits (93), Expect = 7e-04
 Identities = 12/89 (13%), Positives = 26/89 (29%), Gaps = 3/89 (3%)

Query: 812 FNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSK 871
                F         P      A    D+   A    D++I++++V   +   K     +
Sbjct: 235 GKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQ 294

Query: 872 RITGLAFSHAL---NVLVSSGADSQLCVW 897
           ++              ++S   D  L  +
Sbjct: 295 QLGNQQVGVVATGNGRIISLSLDGTLNFY 323

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} Length = 333

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

 Score = 52.9 bits (125), Expect = 1e-07
 Identities = 29/299 (9%), Positives = 74/299 (24%), Gaps = 24/299 (8%)

Query: 350 TVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSM 409
           T+T+ ++       M   P ++ L +       +  + +   +  +    +         
Sbjct: 28  TLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESA------- 80

Query: 410 PLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVN 469
                       S+  +     G    V          +          +++   + G +
Sbjct: 81  ---------LPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCH 131

Query: 470 DIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFST 529
               S  N+ L V     D+      + +G            V    P H      +F  
Sbjct: 132 SANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRH-----MVFHP 186

Query: 530 ALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRF 589
                      ++     + + P      +         +   R  +   +  D  ++ +
Sbjct: 187 NEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPD-GRHLY 245

Query: 590 LAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPR-IRFNKDGCLLAVS-TNDNGIKILA 646
                   I  + +     + S +        PR    +  G  L  +    + I +  
Sbjct: 246 ACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQKSHHISVYE 304

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 51.3 bits (121), Expect = 3e-07
 Identities = 25/343 (7%), Positives = 80/343 (23%), Gaps = 22/343 (6%)

Query: 538 WLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFS 597
           ++ D    RV     G +      + DG+                 T  +R         
Sbjct: 31  FVIDGEAGRVIGMIDGGFLPNPVVADDGSFIAHA-----------STVFSRIARGERTDY 79

Query: 598 IKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTF 657
           ++ +D  ++     I+     P +PR        + +++ +   +     S         
Sbjct: 80  VEVFDPVTLLPTADIEL----PDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAP---AVG 132

Query: 658 ENLAYDASRTSENSKNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENL 717
                  +                          D S            +     +    
Sbjct: 133 VVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPE 192

Query: 718 RATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMT 777
               I+   ++     ++         + +   +  ++          +  +        
Sbjct: 193 DEFLINHPAYSQKAGRLVWPTYT--GKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGG 250

Query: 778 NDVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHP 837
                 +         + + D +    +   + + +  T + +A F         +    
Sbjct: 251 WQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKF-EMGHEIDSINVSQ 309

Query: 838 QDNN-IIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFS 879
            +   + A+   D ++ I++    E    +         +  +
Sbjct: 310 DEKPLLYALSTGDKTLYIHDAESGEELRSVNQLGHGPQVITTA 352

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 45.6 bits (106), Expect = 2e-05
 Identities = 31/263 (11%), Positives = 57/263 (21%), Gaps = 33/263 (12%)

Query: 419 PGVSVNRVIWSPDGSLFGVAYSRH----------IVQIYSYHGGDEVRQHLEIDAHVGGV 468
            G  +   + + DGS    A +             V+++              DA    V
Sbjct: 45  DGGFLPNPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLV 104

Query: 469 ----NDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQ 524
                  + +   K L          + V D    A + + +  +               
Sbjct: 105 GTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDT---- 160

Query: 525 FIFSTALDGKIKAWLYDNLGSRVDYEAPGRWC------TTMAYSADGTRTYQGFRKRSLG 578
             F    DG +    +   G+                    AYS    R         + 
Sbjct: 161 -FFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIH 219

Query: 579 VVQFDTTKNRFLAAGDDFSIKFWD---MDSVQLLTSIDADGGLPASPRIRFNKDGCLLAV 635
            +   +   +FL A +  +                +                        
Sbjct: 220 QIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDR----IYLLVDQRDEWRH 275

Query: 636 STNDNGIKILATSDGIRLLRTFE 658
            T    + +L    G   L  FE
Sbjct: 276 KTASRFVVVLDAKTG-ERLAKFE 297

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 44.8 bits (104), Expect = 4e-05
 Identities = 21/192 (10%), Positives = 44/192 (22%), Gaps = 12/192 (6%)

Query: 322 NVLPVSFTGHSHSHSHSQAFSTPEDLPKTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVG 381
                           +       ++  T               +      L+   T  G
Sbjct: 158 PDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWP-TYTG 216

Query: 382 DIGLWEVGSRERLVLRNFK-----VWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFG 436
            I   ++ S +   L   +         G      Q          +   +       + 
Sbjct: 217 KIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIY--LLVDQRDEWR 274

Query: 437 VAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDA 496
              +   V +     G+ + +          ++ I  S   K L       DKT+ + DA
Sbjct: 275 HKTASRFVVVLDAKTGERLAKF----EMGHEIDSINVSQDEKPLLYALSTGDKTLYIHDA 330

Query: 497 TNGAKQYIFEGH 508
            +G +       
Sbjct: 331 ESGEELRSVNQL 342

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 42.1 bits (97), Expect = 3e-04
 Identities = 32/241 (13%), Positives = 60/241 (24%), Gaps = 49/241 (20%)

Query: 409 MPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGV 468
           + +       P       +   DGSL  VA+        ++                  +
Sbjct: 145 LDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFL-------I 197

Query: 469 NDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYI--FEGHEAPVYSVCPHHKENIQFI 526
           N  A+S    +L   T      I   D ++G  +++   E       +         Q  
Sbjct: 198 NHPAYSQKAGRLVWPT--YTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVA 255

Query: 527 FS----------------TALDGKIKAWLYD-NLGSRVDYEAPGRWCTTMAYSADGTRTY 569
           +                           + D   G R+     G    ++  S D     
Sbjct: 256 YHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGHEIDSINVSQDEKPLL 315

Query: 570 QGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKD 629
                              +  +  D ++   D +S + L S++  G  P    I     
Sbjct: 316 -------------------YALSTGDKTLYIHDAESGEELRSVNQLGHGPQV--ITTADM 354

Query: 630 G 630
           G
Sbjct: 355 G 355

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

 Score = 51.3 bits (122), Expect = 4e-07
 Identities = 44/306 (14%), Positives = 79/306 (25%), Gaps = 25/306 (8%)

Query: 420 GVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGD--EVRQHLEIDAHVGGVNDIAFSHPN 477
           G +V+    S  G    V      V +      +   V +                   +
Sbjct: 61  GYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWED 120

Query: 478 KQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHH----------KENIQFIF 527
           K              + D      + I             H               +FI 
Sbjct: 121 KYAIA-GAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIV 179

Query: 528 STALDGKIKAWLYDNLGS-RVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTK 586
           +    GKI    Y +L + +    +  R+                   R+   +    TK
Sbjct: 180 NVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARN--KLVVIDTK 237

Query: 587 NRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNK--DGCLLAVSTNDNGIKI 644
              L A +D   +                G + A+  +  +             DN  KI
Sbjct: 238 EGKLVAIEDTGGQTPHPGRGA-NFVHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKI 296

Query: 645 LATSD----GIRLLRTFENLAYDASRTSENSKNGDVRSLA--DVKPRITEESNDKSKVWK 698
           L +      G   ++T  N  Y     + N +     S+A  D+K    + S+ + K   
Sbjct: 297 LDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTLP 356

Query: 699 LTELSE 704
           + E + 
Sbjct: 357 IAEWAG 362

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

 Score = 44.8 bits (105), Expect = 5e-05
 Identities = 20/176 (11%), Positives = 48/176 (27%), Gaps = 23/176 (13%)

Query: 758 KATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTF 817
           + +  V       P+  M   D+               +N   V     G+I+L +  T+
Sbjct: 8   RESWKVHVAPEDRPTQQMNDWDL---------------ENLFSVTLRDAGQIALIDGSTY 52

Query: 818 KTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLK-GHSKRITGL 876
           +          A             + +   D  + + ++ + E  +  +         +
Sbjct: 53  EIKTVL-DTGYAVHISRLSA-SGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSI 110

Query: 877 AFSHALN-----VLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQ 927
             S          +  +    Q  +   +  E +K +  +  T        + RV 
Sbjct: 111 ETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVA 166

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 50.3 bits (118), Expect = 4e-07
 Identities = 13/78 (16%), Positives = 27/78 (34%), Gaps = 13/78 (16%)

Query: 451 GGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEA 510
           G DEV + +    H  G+  +  +       +I+   D  I  W +++       + H  
Sbjct: 1   GHDEVLKTIS--GHNKGITALTVNP------LISGSYDGRIMEWSSSSM-----HQDHSN 47

Query: 511 PVYSVCPHHKENIQFIFS 528
            + S+     +    I  
Sbjct: 48  LIVSLDNSKAQEYSSISW 65

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 50.3 bits (118), Expect = 5e-07
 Identities = 20/88 (22%), Positives = 38/88 (43%), Gaps = 2/88 (2%)

Query: 812 FNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVD-EVKSKLKGHS 870
                  +    +   PA         + +++A G  D++I IY+V+   ++   L  H 
Sbjct: 199 SRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHK 258

Query: 871 KRITGLAFSHALNVLVSSGADSQLCVWS 898
             +  L +    + LVSSGAD+ +  W+
Sbjct: 259 DGVNNLLWETP-STLVSSGADACIKRWN 285

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 45.7 bits (106), Expect = 2e-05
 Identities = 16/70 (22%), Positives = 29/70 (41%), Gaps = 5/70 (7%)

Query: 426 VIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITC 485
                +  L         + IYS     ++ + L   AH  GVN++ +  P+    +++ 
Sbjct: 221 NEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALN--AHKDGVNNLLWETPST---LVSS 275

Query: 486 GDDKTIKVWD 495
           G D  IK W+
Sbjct: 276 GADACIKRWN 285

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.6 bits (90), Expect = 0.001
 Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 4/45 (8%)

Query: 860 DEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEK 904
           DEV   + GH+K IT L  +     L+S   D ++  WSS    +
Sbjct: 3   DEVLKTISGHNKGITALTVNP----LISGSYDGRIMEWSSSSMHQ 43

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 48.7 bits (114), Expect = 2e-06
 Identities = 14/152 (9%), Positives = 37/152 (24%), Gaps = 12/152 (7%)

Query: 349 KTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACS 408
             +  +    S P  +   P       +   V      E G  +   +            
Sbjct: 208 VVLNFSFEVVSKPFVIPLIPGSPNPTKL---VPRSMTSEAGEYDLNDMYKRSSPINVDPG 264

Query: 409 MPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGV 468
                  ++   +  +  +     + +  A  + ++  Y            ++      +
Sbjct: 265 DYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTR-------KVTEVKNNL 317

Query: 469 NDIAFSHPNKQLCVITCGDDKTIKVWDATNGA 500
            D+  S   K +  +   DD  I  +      
Sbjct: 318 TDLRLSADRKTV--MVRKDDGKIYTFPLEKPE 347

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 46.8 bits (109), Expect = 9e-06
 Identities = 23/332 (6%), Positives = 62/332 (18%), Gaps = 42/332 (12%)

Query: 346 DLPKTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGD-IGLWEVGSRERLVLRNFKVWDL 404
           D+  T    + +      +      +   + GT  GD +G+++  + +            
Sbjct: 30  DVSGTYVLKVPEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAEKFEENLGNVF 89

Query: 405 GA----------------------CSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRH 442
                                           + +     +     S +       +   
Sbjct: 90  AMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLK 149

Query: 443 IVQIYSYHGGDEVRQHLEIDAHVGG----VNDIAFSHPNKQLCVITCGDDKTIKVWDATN 498
             +   Y         +E            +D A +       +            D   
Sbjct: 150 HGETDGYVMQAIHVYDMEGRKIFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVV 209

Query: 499 GAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTT 558
               +      +  + +                          N   +            
Sbjct: 210 LNFSFE---VVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDY 266

Query: 559 MAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGL 618
                  +            V         +  A +   +  +D+ + ++    +    L
Sbjct: 267 RMIIPLESSIL------IYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVTEVKNNLTDL 320

Query: 619 PASPRIRFNKDGCLLAVSTNDNGIKILATSDG 650
             S       D   + V  +D  I        
Sbjct: 321 RLSA------DRKTVMVRKDDGKIYTFPLEKP 346

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 43.3 bits (100), Expect = 1e-04
 Identities = 20/178 (11%), Positives = 38/178 (21%), Gaps = 5/178 (2%)

Query: 828  PAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVS 887
            P+     F P D ++IA        Q +   V            RI  +       V   
Sbjct: 3    PSKFAEDFSPLDGDLIAFVSRG---QAFIQDVSGTYVLKVPEPLRIRYVRRGGDTKVAFI 59

Query: 888  SGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFE 947
             G      +   D    +  +F +                       F ++         
Sbjct: 60   HGTREGDFLGIYDYRTGKAEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKP 119

Query: 948  TTKLECVKQWV--PRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINP 1003
            T      +  +     S      A            ++   + V+     K+      
Sbjct: 120  TVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTE 177

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 41.0 bits (94), Expect = 6e-04
 Identities = 16/101 (15%), Positives = 31/101 (30%), Gaps = 8/101 (7%)

Query: 428 WSP-DGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCG 486
           +SP DG L     SR    I    G   ++           +  +      K   +    
Sbjct: 10  FSPLDGDLIAFV-SRGQAFIQDVSGTYVLKV-----PEPLRIRYVRRGGDTKVAFIHGTR 63

Query: 487 DDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIF 527
           +   + ++D   G K   FE +   V+++          + 
Sbjct: 64  EGDFLGIYDYRTG-KAEKFEENLGNVFAMGVDRNGKFAVVA 103

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 40.2 bits (92), Expect = 0.001
 Identities = 13/164 (7%), Positives = 44/164 (26%), Gaps = 5/164 (3%)

Query: 743 HLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVM 802
           +L +   R+   S  +   + + ++   P  I +     +          + +       
Sbjct: 192 NLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLND 251

Query: 803 SASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEV 862
                     +   ++ +          +                +   +  Y+V+    
Sbjct: 252 MYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGE-FAAYYQGAPEKGVLLKYDVK---- 306

Query: 863 KSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQK 906
             K+      +T L  S     ++    D ++  +  +  E ++
Sbjct: 307 TRKVTEVKNNLTDLRLSADRKTVMVRKDDGKIYTFPLEKPEDER 350

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 48.0 bits (112), Expect = 3e-06
 Identities = 9/96 (9%), Positives = 21/96 (21%), Gaps = 5/96 (5%)

Query: 466 GGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQF 525
           G    +  + P         G   ++      +     I+  H             +  +
Sbjct: 18  GTAVVLGNT-PAGDKIQYCNGT--SVYTVPVGSLTDTEIYTEHSHQTTVAKTSP--SGYY 72

Query: 526 IFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAY 561
             S  + G ++ W        +    P         
Sbjct: 73  CASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDI 108

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 47.6 bits (111), Expect = 4e-06
 Identities = 14/106 (13%), Positives = 26/106 (24%), Gaps = 2/106 (1%)

Query: 830 ATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSG 889
           A  L   P   + I      S +    V           HS + T    S +     S  
Sbjct: 20  AVVLGNTP-AGDKIQYCNGTS-VYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGD 77

Query: 890 ADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHF 935
               + +W +          + + +G       D+  +        
Sbjct: 78  VHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEG 123

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 46.8 bits (109), Expect = 8e-06
 Identities = 11/61 (18%), Positives = 20/61 (32%), Gaps = 7/61 (11%)

Query: 481 CVITCGDDKTIKVWDATNGAKQYIFEGH---EAPVYSVCPHHKENIQFIFSTALDGKIKA 537
            + +   DKTIK+W+      +         E     +        Q + S + +G I  
Sbjct: 252 KIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTK----QALVSISANGFINF 307

Query: 538 W 538
            
Sbjct: 308 V 308

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 44.9 bits (104), Expect = 3e-05
 Identities = 28/316 (8%), Positives = 73/316 (23%), Gaps = 33/316 (10%)

Query: 586 KNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKIL 645
               +   +  S+    + S+                  + +  G   A       ++I 
Sbjct: 28  AGDKIQYCNGTSVYTVPVGSLTDTEIYTEHSHQTTV--AKTSPSGYYCASGDVHGNVRIW 85

Query: 646 ATSDGIRLLRTFENLAYDASRTSENSKNGDVRSLADVKPRITEESNDKSKVWKLTELSEP 705
            T+    +L+T   +     +           +                       L+  
Sbjct: 86  DTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQ 145

Query: 706 NQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAP 765
            +  +    +                              ++      +++         
Sbjct: 146 ARAMNSVDFKP--------------------------SRPFRIISGSDDNTVAIFEGPPF 179

Query: 766 QLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMP 825
           +                 NP+ ++           + +   G         F+  +    
Sbjct: 180 KFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGT----KTGVFEDDSLKNV 235

Query: 826 PPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSK-RITGLAFSHALNV 884
               + F      D   IA    D +I+I+NV   +V+  +   ++     L        
Sbjct: 236 AHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQA 295

Query: 885 LVSSGADSQLCVWSSD 900
           LVS  A+  +   + +
Sbjct: 296 LVSISANGFINFVNPE 311

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 41.4 bits (95), Expect = 4e-04
 Identities = 31/275 (11%), Positives = 69/275 (25%), Gaps = 32/275 (11%)

Query: 397 RNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVR 456
            +     +          +  +          SP G           V+I+       + 
Sbjct: 38  TSVYTVPV---GSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHIL 94

Query: 457 QHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVC 516
           +   I    G V DI++   +K++  +  G ++   V+    G       G    + SV 
Sbjct: 95  KT-TIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVD 153

Query: 517 PHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRS 576
                  + I  +  +                 E      +             G     
Sbjct: 154 FKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTI 213

Query: 577 LGVVQFDTTK---------------------------NRFLAAGDDFSIKFWDMDSVQLL 609
           +     D TK                            +  +A  D +IK W++ ++++ 
Sbjct: 214 VLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVE 273

Query: 610 TSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKI 644
            +I     +    ++        L   + +  I  
Sbjct: 274 KTIPVGTRIE-DQQLGIIWTKQALVSISANGFINF 307

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 44.6 bits (104), Expect = 6e-05
 Identities = 26/276 (9%), Positives = 70/276 (25%), Gaps = 34/276 (12%)

Query: 345 EDLPKTVTRTLNQGSSPMSMDFHPVQQTLLLV-GTNVGDIGLWEVGSRERLVLRNFKVWD 403
            ++ ++    +     P           L  V   + G I L +  S++  +++      
Sbjct: 5   PEMRESWKVLVKPEDRPKKQLNDLDLPNLFSVTLRDAGQIALVDGDSKK--IVKVIDT-- 60

Query: 404 LGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGG--DEVRQHLEI 461
                           G +V+    S  G    V      + +         +V +    
Sbjct: 61  ----------------GYAVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIG 104

Query: 462 DAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKE 521
                  +         +  +          + D      + I       V +   H + 
Sbjct: 105 IEARSVESSKFKG-YEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEP 163

Query: 522 NIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQ 581
            +  I ++    +    + +  G  +          T+           G          
Sbjct: 164 RVAAIIASHEHPEFIVNVKET-GKVLLVNYKDIDNLTVTSIGAAPFLADGG--------- 213

Query: 582 FDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGG 617
           +D++   F+ A ++ +         + L+++   G 
Sbjct: 214 WDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGK 249

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 44.2 bits (103), Expect = 6e-05
 Identities = 51/490 (10%), Positives = 115/490 (23%), Gaps = 107/490 (21%)

Query: 453 DEVRQHLEIDAHVGGV-NDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAP 511
            E+R+  ++                   L  +T  D   I + D  +     + +   A 
Sbjct: 5   PEMRESWKVLVKPEDRPKKQLNDLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYAV 64

Query: 512 VYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQG 571
                 H                                           SA G      
Sbjct: 65  ------HI---------------------------------------SRMSASGRYLL-- 77

Query: 572 FRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASP---RIRFNK 628
                                G D  I   D+ + +     +   G+ A           
Sbjct: 78  -------------------VIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGY 118

Query: 629 DGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKNGDVRSLADVKPRITE 688
           +               +   + +   +           T        V ++         
Sbjct: 119 EDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTV-DTQTYHPEPRVAAIIA------- 170

Query: 689 ESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKW 748
            S++  +     + +      + +  +NL  T I    F   G       S+  + +   
Sbjct: 171 -SHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLADG----GWDSSHRYFMTAA 225

Query: 749 QRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGK 808
             + + +   +       L                +P+           D  + S  G  
Sbjct: 226 NNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSI-SLIGTD 284

Query: 809 ISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAI------GMDDSSIQIYNVRVDEV 862
                   +K +A        + F+  HP+ +++              S+ +++++  + 
Sbjct: 285 PKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDA 344

Query: 863 KSKLKGHS---------KRITGLAFSHA-----LNVLVSSGADSQLCVWSSDGWEKQ--- 905
           K ++   +         KR+    ++        +V       S L V      + +   
Sbjct: 345 KYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLKLKAVV 404

Query: 906 KNRFLQIPTG 915
           K+  L  PTG
Sbjct: 405 KDPRLITPTG 414

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

 Score = 42.9 bits (99), Expect = 1e-04
 Identities = 29/286 (10%), Positives = 65/286 (22%), Gaps = 47/286 (16%)

Query: 349 KTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKV------- 401
             VT T+  GS+PM     P    + +   +  D+ + +  +   +              
Sbjct: 22  NKVTATIPVGSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGSSPQGVAV 81

Query: 402 ---------------WDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQI 446
                                +     A     G S   +  SPDG    V  +      
Sbjct: 82  SPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPLGLALSPDGKKLYVTNNGDKTVS 141

Query: 447 YSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFE 506
                   V   + +     G+               +        V +           
Sbjct: 142 VINTVTKAVINTVSVGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTN-----SVIDTV 196

Query: 507 GHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGT 566
             EA    +  + +    ++ +        + +             G     +A + DG 
Sbjct: 197 KVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGPDPAGIAVTPDGK 256

Query: 567 RTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSI 612
           + Y                    +A     ++   D  +  +  ++
Sbjct: 257 KVY--------------------VALSFCNTVSVIDTATNTITATM 282

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

 Score = 41.0 bits (94), Expect = 6e-04
 Identities = 10/91 (10%), Positives = 22/91 (24%), Gaps = 4/91 (4%)

Query: 421 VSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQL 480
            S   V      +                 G +++   + +         IA + P+ + 
Sbjct: 202 PSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVG---PDPAGIAVT-PDGKK 257

Query: 481 CVITCGDDKTIKVWDATNGAKQYIFEGHEAP 511
             +      T+ V D             + P
Sbjct: 258 VYVALSFCNTVSVIDTATNTITATMAVGKNP 288

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 41.5 bits (96), Expect = 4e-04
 Identities = 19/187 (10%), Positives = 41/187 (21%), Gaps = 14/187 (7%)

Query: 332 SHSHSHSQAFSTPEDLPKTVTRTLNQGSSPMSMDFHPVQ--QTLLLVGTNVGDIGLWEVG 389
             S   S A S     P        Q +   +      Q     +LV      I   ++ 
Sbjct: 180 LGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAVASSILQGDIP 239

Query: 390 SRERLVLRNFK-----VWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIV 444
           +    +                 S   Q           + ++            +    
Sbjct: 240 AAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNT---DGIMILTVEHSRSCLAAAENT 296

Query: 445 QIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYI 504
              +   G          ++    + I  +              + + ++DA +   Q  
Sbjct: 297 SSVTASVGQTSGP----ISNGHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSS 352

Query: 505 FEGHEAP 511
            E  + P
Sbjct: 353 VELDKGP 359

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 41.1 bits (95), Expect = 6e-04
 Identities = 17/252 (6%), Positives = 54/252 (21%), Gaps = 27/252 (10%)

Query: 419 PGVSVNRVIWSPDGSLFGVA---YSR-------HIVQIYSYHGGDEVRQ----HLEIDAH 464
            G  ++  +    GS F +A   ++R         V+++       +           + 
Sbjct: 63  LGAFLSLAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSV 122

Query: 465 VGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQ 524
              V+ I     +  L +                 +   + +                  
Sbjct: 123 GPRVHIIGNCASSACL-LFFLFGSSAAAGLSVPGASDDQLTKSASCFHIH----PGAAAT 177

Query: 525 FIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDT 584
               +     + A       +                +     + Q  +    G++ +  
Sbjct: 178 HYLGSC-PASLAASDLAAAPAAA-------GIVGAQCTGAQNCSSQAAQANYPGMLVWAV 229

Query: 585 TKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKI 644
             +                           +        +   K+   + + T ++    
Sbjct: 230 ASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSC 289

Query: 645 LATSDGIRLLRT 656
           LA ++    +  
Sbjct: 290 LAAAENTSSVTA 301

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} Length = 441

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

 Score = 40.3 bits (94), Expect = 0.001
 Identities = 51/364 (14%), Positives = 91/364 (25%), Gaps = 78/364 (21%)

Query: 589 FLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTND-----NGIK 643
           F + G    ++   + S++ L  I             FN D       TN+      G +
Sbjct: 14  FWSGGHQGEVRVLGVPSMRELMRIPV-----------FNVDSATGWGITNESKEILGGDQ 62

Query: 644 ILATSDGIRLLRTFENLAYDASR---TSENSKNGDVRSLADVKP-RITEESNDKSKVWKL 699
                D      +  +  YD        + +       L  +K  +IT   N ++     
Sbjct: 63  QYLNGDCHHPHISMTDGRYDGKYLFINDKANTRVARIRLDIMKTDKITHIPNVQA----- 117

Query: 700 TELSEPNQCRSLRLPENLRATKISR-LIFTNSGNAILALASNAIHLLWKWQRTERNSSGK 758
                            LR  K+ +      +   ++   ++          T   +   
Sbjct: 118 --------------IHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDA 163

Query: 759 ATASVAPQL--WQPPSGIMMTND-----VTDSNPEEAV-------------------PCF 792
            T  VA Q+                    T  N E AV                      
Sbjct: 164 ETMDVAWQVIVDGNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIA 223

Query: 793 ALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSI 852
           A  K  ++          +      +      P P     L   P     IA G    ++
Sbjct: 224 AAVKAGNFKTIGDSKVPVVDGRGESEFTRYI-PVPKNPHGLNTSPDGKYFIANGKLSPTV 282

Query: 853 QIYNV-RVDEVKSKLKGHSKRITG----------LAFSHALNVLVSSGADSQLCVWSSDG 901
            +  + ++D++          I              F    N   +   DSQ+C W+   
Sbjct: 283 SVIAIDKLDDLFEDKIELRDTIVAEPELGLGPLHTTFDGRGNAYTTLFIDSQVCKWNIAD 342

Query: 902 WEKQ 905
             K 
Sbjct: 343 AIKH 346

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	1082
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	100.0
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	100.0
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	100.0
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	100.0
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	100.0
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	100.0
d1tbga_	340	beta1-subunit of the signal-transducing G protein	100.0
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	100.0
d1tbga_	340	beta1-subunit of the signal-transducing G protein	100.0
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	100.0
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	100.0
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	100.0
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	100.0
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	100.0
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	100.0
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	100.0
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	100.0
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	100.0
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.98
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.98
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.97
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.97
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.97
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.97
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.97
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.97
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.94
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.94
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.94
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.94
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.93
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.93
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.93
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.89
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.89
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.87
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.86
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.84
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.81
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.76
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.73
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.71
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.67
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.61
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	99.53
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	99.49
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	99.45
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	99.41
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	99.38
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	99.36
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	99.28
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	99.26
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	99.23
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	99.2
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	99.19
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	99.14
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	99.11
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	99.06
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	98.88
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	98.78
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	98.65
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	98.33
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	98.26
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	97.98
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	97.78
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	97.35
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	97.35
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	97.31
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	97.23
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	97.2
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	96.94
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	96.8
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	96.79
d2nxpa1	149	TAF5 subunit of TFIID {Human (Homo sapiens) [TaxId	96.73
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	96.62
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	96.43
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	96.28
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	96.07
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	95.99
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	95.83
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	95.83
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	95.52
d2j4ba1	131	TAF5 subunit of TFIID {Encephalitozoon cuniculi [T	95.33
d1uuja_	76	Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-te	94.53
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	94.33
d2j49a1	134	TAF5 subunit of TFIID {Saccharomyces cerevisiae [T	93.32
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	90.71
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	86.9
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	82.82
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	80.34

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.7e-39  Score=277.75  Aligned_cols=173  Identities=17%  Similarity=0.285  Sum_probs=138.4

Q ss_pred             CCEEEECCCCCCCEEEEEECCCCEEEEEECCCCCEEEEECCCCCEEEEECEEEECCCCCCCCCCCCCCCCCCCCEEEEEE
Q ss_conf             44466047899932889805898299998079919999725641356511165215778832110113698975559999
Q 001415          349 KTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIW  428 (1082)
Q Consensus       349 ~~~~~~~~h~~~v~~~~fspdg~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~i~~  428 (1082)
                      .+...+++|.+.|+|++|||+|++ ||+|+ ||.|+|||+.++.....              .......+|.+.|.+++|
T Consensus        42 ~~~~~~~~H~~~V~~v~fs~~g~~-latg~-dg~V~iWd~~~~~~~~~--------------~~~~~~~~h~~~I~~v~~  105 (337)
T d1gxra_          42 ARQINTLNHGEVVCAVTISNPTRH-VYTGG-KGCVKVWDISHPGNKSP--------------VSQLDCLNRDNYIRSCKL  105 (337)
T ss_dssp             EEEEEEECCSSCCCEEEECSSSSE-EEEEC-BSEEEEEETTSTTCCSC--------------SEEEECSCTTSBEEEEEE
T ss_pred             CEEEEECCCCCCEEEEEECCCCCE-EEEEE-CCEEEEEECCCCCCCCE--------------EEEEEECCCCCCEEEEEE
T ss_conf             549998799992899999899999-99997-99889977367763311--------------687640488996899998


Q ss_pred             ECCCCEEEEEECCCEEEEEECCCCCEEEEEEEEECCCCCEEEEEECCCCCCEEEEEEECCCCEEEEECCCCCEEEEEECC
Q ss_conf             02998699996898199999447931347798615666744999617999069999717996999984489546994068
Q 001415          429 SPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGH  508 (1082)
Q Consensus       429 spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~V~~i~fs~dg~~~~l~s~s~d~~i~iWd~~~~~~~~~~~~h  508 (1082)
                      +||+++|++++.|+.|++||+...... ....+.+|...+.+++|+|++.  ++++++.|+.+++|++.++++.....+|
T Consensus       106 s~dg~~l~s~~~dg~i~iwd~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~--~l~s~~~d~~i~~~~~~~~~~~~~~~~~  182 (337)
T d1gxra_         106 LPDGCTLIVGGEASTLSIWDLAAPTPR-IKAELTSSAPACYALAISPDSK--VCFSCCSDGNIAVWDLHNQTLVRQFQGH  182 (337)
T ss_dssp             CTTSSEEEEEESSSEEEEEECCCC--E-EEEEEECSSSCEEEEEECTTSS--EEEEEETTSCEEEEETTTTEEEEEECCC
T ss_pred             CCCCCEEEEEECCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCC--CCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             679988988612332111111111111-1111111111111111111111--1111111111111111111111111111


Q ss_pred             CCCEEEEEEEECCCCEEEEEECCCCCEEEEECCC
Q ss_conf             8674898311048943999964899189994688
Q 001415          509 EAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDN  542 (1082)
Q Consensus       509 ~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~  542 (1082)
                      ...+.+++|+++.  ..+++++.|+.+++||+++
T Consensus       183 ~~~v~~l~~s~~~--~~~~~~~~d~~v~i~d~~~  214 (337)
T d1gxra_         183 TDGASCIDISNDG--TKLWTGGLDNTVRSWDLRE  214 (337)
T ss_dssp             SSCEEEEEECTTS--SEEEEEETTSEEEEEETTT
T ss_pred             CCCCCCCCCCCCC--CCCCCCCCCCCCCCCCCCC
T ss_conf             1111101234443--2112235665532111111

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2.1e-39  Score=280.12  Aligned_cols=230  Identities=14%  Similarity=0.266  Sum_probs=140.7

Q ss_pred             CCCEEEECCCCCCCEEEEEECCCCEEEEEECCCCCEEEEECCCCCEEEEECEEEECCCCCCCCCCCCCCCCCCCCEEEEE
Q ss_conf             74446604789993288980589829999807991999972564135651116521577883211011369897555999
Q 001415          348 PKTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVI  427 (1082)
Q Consensus       348 ~~~~~~~~~h~~~v~~~~fspdg~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~i~  427 (1082)
                      ...+...++|.+.|+|++|||||+ +||+|+ |+.|+|||+.+++.+.+......... ...........+|...|++++
T Consensus        52 ~~~l~~~~~H~~~V~~l~fs~dg~-~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~V~~l~  128 (388)
T d1erja_          52 DVELHKSLDHTSVVCCVKFSNDGE-YLATGC-NKTTQVYRVSDGSLVARLSDDSAANK-DPENLNTSSSPSSDLYIRSVC  128 (388)
T ss_dssp             EEEEEEEEECSSCCCEEEECTTSS-EEEEEC-BSCEEEEETTTCCEEEEECC------------------CCCCBEEEEE
T ss_pred             EEEEEEECCCCCCEEEEEECCCCC-EEEEEE-CCEEEEEEECCCCEEEEECCCCCCCC-CCCCCCCCCCCCCCCCEEEEE
T ss_conf             541076079999689999999999-999994-99489998136405766316654432-443211101467789889999


Q ss_pred             EECCCCEEEEEECCCEEEEEECCCCCEEEEEEEEECCCCCEEEEEECCCCCCEEEEEEECCCCEEEEECCCCCEEEEEEC
Q ss_conf             90299869999689819999944793134779861566674499961799906999971799699998448954699406
Q 001415          428 WSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEG  507 (1082)
Q Consensus       428 ~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~V~~i~fs~dg~~~~l~s~s~d~~i~iWd~~~~~~~~~~~~  507 (1082)
                      |+|++++|++|+.|+.|++|+...++.+.   .+.+|...|.++.|++++.  .+++++.++.+++||..+.........
T Consensus       129 ~s~~~~~l~s~~~dg~v~i~~~~~~~~~~---~~~~h~~~v~~~~~~~~~~--~~~~~~~~~~i~~~d~~~~~~~~~~~~  203 (388)
T d1erja_         129 FSPDGKFLATGAEDRLIRIWDIENRKIVM---ILQGHEQDIYSLDYFPSGD--KLVSGSGDRTVRIWDLRTGQCSLTLSI  203 (388)
T ss_dssp             ECTTSSEEEEEETTSCEEEEETTTTEEEE---EECCCSSCEEEEEECTTSS--EEEEEETTSEEEEEETTTTEEEEEEEC
T ss_pred             ECCCCCCCEECCCCCCCCCCCCCCCCCCC---CCCCCCCCCCCCCCCCCCC--CCCCCCCCEEEEEEECCCCCCCCCCCC
T ss_conf             88999801213444111121111111111---1111111111101111111--111222101565410111111000012


Q ss_pred             CCCCEEEEEEEECCCCEEEEEECCCCCEEEEECCCCCCEEEECCCCCCEEEEEECCCCCEEEECCCCCCEEEEEECCCCC
Q ss_conf             88674898311048943999964899189994688993134238997157879866997366231146306999418999
Q 001415          508 HEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKN  587 (1082)
Q Consensus       508 h~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~i~~~~~~~~~~  587 (1082)
                      +... ..+.+.+ .++.++++++.|+.|++|+..+                                             
T Consensus       204 ~~~~-~~~~~~~-~~~~~l~~~~~d~~i~i~~~~~---------------------------------------------  236 (388)
T d1erja_         204 EDGV-TTVAVSP-GDGKYIAAGSLDRAVRVWDSET---------------------------------------------  236 (388)
T ss_dssp             SSCE-EEEEECS-TTCCEEEEEETTSCEEEEETTT---------------------------------------------
T ss_pred             CCCC-CCCCCCC-CCCCEEEEECCCCEEEEEECCC---------------------------------------------
T ss_conf             4544-2112368-8787589973898199963455---------------------------------------------


Q ss_pred             EEEEEECCCEEEEEECCCCCEEEEEEC-----CCCCCCCCEEEECCCCCEEEEEECCCCEEEEEECCC
Q ss_conf             799970798299998788513799705-----999999680898699989999978996799980389
Q 001415          588 RFLAAGDDFSIKFWDMDSVQLLTSIDA-----DGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG  650 (1082)
Q Consensus       588 ~l~~~~~dg~i~iwd~~~~~~~~~~~~-----~~~~~~i~~~~~s~dg~~l~~~~~dg~i~iwd~~~~  650 (1082)
                                        +.....+..     ..+...|.+++|+|++++|++++.|+.+++|++.++
T Consensus       237 ------------------~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~  286 (388)
T d1erja_         237 ------------------GFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNA  286 (388)
T ss_dssp             ------------------CCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC---
T ss_pred             ------------------CCCCEEECCCCCCCCCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCC
T ss_conf             ------------------73000102443334577898789999799999999978992898751577

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=3.2e-39  Score=278.89  Aligned_cols=102  Identities=20%  Similarity=0.364  Sum_probs=91.7

Q ss_pred             CCCCEEEEEE-CCEEEEEECCCCEEEEEECCCCCCEEEEEEECCCCCEEEEEECCCCEEEEECCCCEEEEEECCCCCCEE
Q ss_conf             4998389940-990899866898057897799998059999059995799974799589996203312135223555789
Q 001415          796 KNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRIT  874 (1082)
Q Consensus       796 ~dg~~l~~~s-dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~sp~~~~~lasg~~dg~I~iwd~~~~~~~~~l~~h~~~V~  874 (1082)
                      .++.++++++ |+.|++|+..+++++..+.+|...+.+++|+| ++++|++|+.||.|++||+.+++++..+.+|.+.|+
T Consensus       215 ~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~V~  293 (317)
T d1vyhc1         215 KPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHS-GGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVT  293 (317)
T ss_dssp             --CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECS-SSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEE
T ss_pred             CCCCEEEECCCCCEEEEEECCCCCEEEEEECCCCCEEEEEECC-CCCEEEEEECCCEEEEEECCCCCEEEEECCCCCCEE
T ss_conf             5886147516997899988899968899968899879999879-999999997989499999999919999928999889


Q ss_pred             EEEEECCCCEEEEEECCCCEEEEE
Q ss_conf             999957999899992899499999
Q 001415          875 GLAFSHALNVLVSSGADSQLCVWS  898 (1082)
Q Consensus       875 ~i~~s~d~~~l~s~s~Dg~I~iwd  898 (1082)
                      +++|+|++++|++++.|++|++||
T Consensus       294 ~~~~s~~~~~l~s~s~Dg~i~iWd  317 (317)
T d1vyhc1         294 SLDFHKTAPYVVTGSVDQTVKVWE  317 (317)
T ss_dssp             EEEECSSSSCEEEEETTSEEEEEC
T ss_pred             EEEECCCCCEEEEEECCCEEEEEC
T ss_conf             999949999999992899499829

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=7.2e-38  Score=269.63  Aligned_cols=186  Identities=17%  Similarity=0.212  Sum_probs=143.1

Q ss_pred             EEECCCCEEEEEE-CCEEEEEECCCCEEEEEECCCCCCEEEEEEECCCCCEEEEEECCCCEEEEECCCCEEEEEECCCCC
Q ss_conf             9604998389940-990899866898057897799998059999059995799974799589996203312135223555
Q 001415          793 ALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSK  871 (1082)
Q Consensus       793 ~~s~dg~~l~~~s-dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~sp~~~~~lasg~~dg~I~iwd~~~~~~~~~l~~h~~  871 (1082)
                      .+.+++++++.+. ++.+++||+.+++......++...+.++.+++ ++.++++++.|+.|++|+..++..+..+.+|..
T Consensus       166 ~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~h~~  244 (355)
T d1nexb2         166 TVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDH-ERKRCISASMDTTIRIWDLENGELMYTLQGHTA  244 (355)
T ss_dssp             EEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEET-TTTEEEEEETTSCEEEEETTTCCEEEEECCCSS
T ss_pred             CCCCCCCEEEEECCCCEEEEEECCCCCCEEEEECCCCCCCCCCCCC-CCEEEECCCCCCEEEEEECCCCCCCCCCCCCCC
T ss_conf             0002563344211442044430131100011000123321111112-100210124563687630122111111111111


Q ss_pred             CEEEEEEECCCCEEEEEECCCCEEEEECCCCCCCCCEEEECCCCCCCCCCCCCEEEECCCCCEEEEEECCEEEEEECCCC
Q ss_conf             78999995799989999289949999957863112302103689989889993899817884999993682999972676
Q 001415          872 RITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKL  951 (1082)
Q Consensus       872 ~V~~i~~s~d~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~i~fspdg~~l~~~~d~~i~iwd~~~~  951 (1082)
                      .|.+++++  +++|++++.||.|++||+.+...    .......     .......+++++.+++++.|+.|++||++++
T Consensus       245 ~v~~~~~~--~~~l~~~~~dg~i~iwd~~~~~~----~~~~~~~-----~~~~~~~~~~~~~~l~~g~d~~i~vwd~~tg  313 (355)
T d1nexb2         245 LVGLLRLS--DKFLVSAAADGSIRGWDANDYSR----KFSYHHT-----NLSAITTFYVSDNILVSGSENQFNIYNLRSG  313 (355)
T ss_dssp             CCCEEEEC--SSEEEEECTTSEEEEEETTTCCE----EEEEECT-----TCCCCCEEEECSSEEEEEETTEEEEEETTTC
T ss_pred             CCCCCCCC--CCEEEEEECCCCCCCCCCCCCCE----ECCCCCC-----CCEEEEEECCCCCEEEEEECCEEEEEECCCC
T ss_conf             11111232--10033320111111111111110----0012468-----8229999849998999980997999999999


Q ss_pred             CEEEEECCCCCCCCEEEEEECCCCCEEEEEECCCCEEEEEC
Q ss_conf             21000002799965448998689966999646881999846
Q 001415          952 ECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSA  992 (1082)
Q Consensus       952 ~~~~~~~~~~h~~~i~~i~~s~dg~~l~t~s~dg~i~iwd~  992 (1082)
                      +++.... .+|...|.+++|+|+ .++++++.||.++||.+
T Consensus       314 ~~~~~~~-~~~~~~V~~v~~~~~-~~~~~~s~dg~~~l~~~  352 (355)
T d1nexb2         314 KLVHANI-LKDADQIWSVNFKGK-TLVAAVEKDGQSFLEIL  352 (355)
T ss_dssp             CBCCSCT-TTTCSEEEEEEEETT-EEEEEEESSSCEEEEEE
T ss_pred             CEEEEEE-CCCCCCEEEEEECCC-EEEEEEECCCCEEEEEE
T ss_conf             7988884-589998999998399-19999989890999999

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2.8e-38  Score=272.48  Aligned_cols=333  Identities=17%  Similarity=0.265  Sum_probs=224.0

Q ss_pred             EECCCCCEEEEECCCCCEEEEECEEEECCCCCCCCCCCCCCCCCCCCEEEEEEECCCCEEEEEECCCEEEEEECCCCCEE
Q ss_conf             98079919999725641356511165215778832110113698975559999029986999968981999994479313
Q 001415          376 VGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEV  455 (1082)
Q Consensus       376 sgs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~i~~spdg~~las~~~d~~i~iwd~~~~~~~  455 (1082)
                      .+..++...+|+....+.......               ...+|.+.|+|++|||||++||+|+ |+.|+||++.+++.+
T Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~l~---------------~~~~H~~~V~~l~fs~dg~~lasg~-d~~i~iW~~~~~~~~   96 (388)
T d1erja_          33 KKQTNDYYILYNPALPREIDVELH---------------KSLDHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLV   96 (388)
T ss_dssp             EEECSSCEEEECTTSCCCEEEEEE---------------EEEECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEE
T ss_pred             CCCCCCCEEEECCCCCCCEEEEEE---------------EECCCCCCEEEEEECCCCCEEEEEE-CCEEEEEEECCCCEE
T ss_conf             468897089868877762054107---------------6079999689999999999999994-994899981364057


Q ss_pred             EEE---------------EEEECCCCCEEEEEECCCCCCEEEEEEECCCCEEEEECCCCCEEEEEECCCCCEEEEEEEEC
Q ss_conf             477---------------98615666744999617999069999717996999984489546994068867489831104
Q 001415          456 RQH---------------LEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHK  520 (1082)
Q Consensus       456 ~~~---------------~~~~~h~~~V~~i~fs~dg~~~~l~s~s~d~~i~iWd~~~~~~~~~~~~h~~~v~~i~~~~~  520 (1082)
                      ...               ....+|...|.+++|+|+++  +|++|+.|+.|++|+...++.+..+.+|...|.++.+.+.
T Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~--~l~s~~~dg~v~i~~~~~~~~~~~~~~h~~~v~~~~~~~~  174 (388)
T d1erja_          97 ARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGK--FLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPS  174 (388)
T ss_dssp             EEECC-----------------CCCCBEEEEEECTTSS--EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTT
T ss_pred             EEECCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCC--CCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             66316654432443211101467789889999889998--0121344411112111111111111111111111011111


Q ss_pred             CCCEEEEEECCCCCEEEEECCCCCCEEEECCCCCCEEEEEECCCCCEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEE
Q ss_conf             89439999648991899946889931342389971578798669973662311463069994189997999707982999
Q 001415          521 ENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKF  600 (1082)
Q Consensus       521 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i  600 (1082)
                      .  ..+++++.++.+++||                                                             
T Consensus       175 ~--~~~~~~~~~~~i~~~d-------------------------------------------------------------  191 (388)
T d1erja_         175 G--DKLVSGSGDRTVRIWD-------------------------------------------------------------  191 (388)
T ss_dssp             S--SEEEEEETTSEEEEEE-------------------------------------------------------------
T ss_pred             C--CCCCCCCCCEEEEEEE-------------------------------------------------------------
T ss_conf             1--1111222101565410-------------------------------------------------------------


Q ss_pred             EECCCCCEEEEEECCCCCCCCCEEEEC-CCCCEEEEEECCCCEEEEEECCCCCCEEECCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             987885137997059999996808986-9998999997899679998038941101012443322333335679982114
Q 001415          601 WDMDSVQLLTSIDADGGLPASPRIRFN-KDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKNGDVRSL  679 (1082)
Q Consensus       601 wd~~~~~~~~~~~~~~~~~~i~~~~~s-~dg~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s  679 (1082)
                        ..+.........+..   ..++.+. +++.++++++.|+.+++|+..++.. ...+.....                 
T Consensus       192 --~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~-~~~~~~~~~-----------------  248 (388)
T d1erja_         192 --LRTGQCSLTLSIEDG---VTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFL-VERLDSENE-----------------  248 (388)
T ss_dssp             --TTTTEEEEEEECSSC---EEEEEECSTTCCEEEEEETTSCEEEEETTTCCE-EEEEC---------------------
T ss_pred             --CCCCCCCCCCCCCCC---CCCCCCCCCCCCEEEEECCCCEEEEEECCCCCC-CEEECCCCC-----------------
T ss_conf             --111111000012454---421123688787589973898199963455730-001024433-----------------


Q ss_pred             CCCCCEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEECCCCCEEEEEECCCCCCCCCCCC
Q ss_conf             78886012116993228982035787742222346764466403799916975144312677599963033224799876
Q 001415          680 ADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKA  759 (1082)
Q Consensus       680 ~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~  759 (1082)
                                                        ...+|...|.++.|++++..+++++.|+.+++|++.......    
T Consensus       249 ----------------------------------~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~----  290 (388)
T d1erja_         249 ----------------------------------SGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKS----  290 (388)
T ss_dssp             ------------------------------------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC-----------
T ss_pred             ----------------------------------CCCCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCCCC----
T ss_conf             ----------------------------------345778987899997999999999789928987515776432----


Q ss_pred             CCCCCCCCCCCCCCCEEECCCCCCCCCCCCCEEEEECCCCEEEEEECCEEEEEECCCCEEEEEECCCCCCEEEEEEECCC
Q ss_conf             55558620189986201034689999988018996049983899409908998668980578977999980599990599
Q 001415          760 TASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQD  839 (1082)
Q Consensus       760 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~dg~~l~~~sdg~i~iwd~~~~~~~~~~~~~~~~v~~i~~sp~~  839 (1082)
                                                     ...                   .............|...+++++|+| +
T Consensus       291 -------------------------------~~~-------------------~~~~~~~~~~~~~~~~~v~~~~~s~-~  319 (388)
T d1erja_         291 -------------------------------DSK-------------------TPNSGTCEVTYIGHKDFVLSVATTQ-N  319 (388)
T ss_dssp             ----------------------------------------------------------CEEEEEECCSSCEEEEEECG-G
T ss_pred             -------------------------------CCC-------------------CCCCCCEEEECCCCCCEEEEEEECC-C
T ss_conf             -------------------------------101-------------------3444200110124553278999889-9


Q ss_pred             CCEEEEEECCCCEEEEECCCCEEEEEECCCCCCEEEEEE------ECCCCEEEEEECCCCEEEEECCC
Q ss_conf             957999747995899962033121352235557899999------57999899992899499999578
Q 001415          840 NNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAF------SHALNVLVSSGADSQLCVWSSDG  901 (1082)
Q Consensus       840 ~~~lasg~~dg~I~iwd~~~~~~~~~l~~h~~~V~~i~~------s~d~~~l~s~s~Dg~I~iwd~~~  901 (1082)
                      +++|++|+.||.|++||+.+++++..+.+|.+.|+++++      +|++.+|++++.||+|++|+++.
T Consensus       320 ~~~l~sg~~dg~i~vwd~~~~~~~~~l~~H~~~V~~~~~~~~~~~spd~~~l~s~s~Dg~I~iW~~~k  387 (388)
T d1erja_         320 DEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYKK  387 (388)
T ss_dssp             GCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEEE
T ss_pred             CCEEEEEECCCEEEEEECCCCCEEEEEECCCCCEEEEEEECCCCCCCCCCEEEEEECCCEEEEEEEEE
T ss_conf             99999996989799999999969999968899789999846742589999999991899799976214

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=2.6e-38  Score=272.63  Aligned_cols=268  Identities=16%  Similarity=0.309  Sum_probs=188.5

Q ss_pred             EECCCCCCCEEEEEECCCCEEEEEECCCCCEEEEECCCCCEEEEECEEEECCCCCCCCCCCCCCCCCCCCEEEEEEECCC
Q ss_conf             60478999328898058982999980799199997256413565111652157788321101136989755599990299
Q 001415          353 RTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDG  432 (1082)
Q Consensus       353 ~~~~h~~~v~~~~fspdg~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~i~~spdg  432 (1082)
                      .+.+|.+.|++++|+|+++ +|++|+.||+|+|||+.+++.+.+                   +.+|...|.+++|+|++
T Consensus        12 ~L~GH~~~I~~l~~sp~~~-~l~s~s~Dg~i~iWd~~~~~~~~~-------------------~~~h~~~V~~~~~~~~~   71 (317)
T d1vyhc1          12 ALSGHRSPVTRVIFHPVFS-VMVSASEDATIKVWDYETGDFERT-------------------LKGHTDSVQDISFDHSG   71 (317)
T ss_dssp             EEECCSSCEEEEEECSSSS-EEEEEESSSCEEEEETTTCCCCEE-------------------ECCCSSCEEEEEECTTS
T ss_pred             EECCCCCCEEEEEECCCCC-EEEEEECCCEEEEEECCCCCEEEE-------------------EECCCCCEEEEEEECCC
T ss_conf             9858888768999938989-999993899299998999979999-------------------95788867777630111


Q ss_pred             CEEEEEECCCEEEEEECCCCCEEEEEEEEECCCCCEEEEEECCCCCCEEEEEEECCCCEEEEECCCCCEEEEEECCCCCE
Q ss_conf             86999968981999994479313477986156667449996179990699997179969999844895469940688674
Q 001415          433 SLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPV  512 (1082)
Q Consensus       433 ~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~V~~i~fs~dg~~~~l~s~s~d~~i~iWd~~~~~~~~~~~~h~~~v  512 (1082)
                      .+++++..++.+.+|+....+...   .+.+|...+.++.|++++.  .+++++.|+.+++||+.++..+..+.+|...+
T Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~  146 (317)
T d1vyhc1          72 KLLASCSADMTIKLWDFQGFECIR---TMHGHDHNVSSVSIMPNGD--HIVSASRDKTIKMWEVQTGYCVKTFTGHREWV  146 (317)
T ss_dssp             SEEEEEETTSCCCEEETTSSCEEE---CCCCCSSCEEEEEECSSSS--EEEEEETTSEEEEEETTTCCEEEEEECCSSCE
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCC---CCCCCCCCCEEEECCCCCC--EEEEECCCCCEEEEECCCCEEEEEECCCCCCC
T ss_conf             101111111110111001111111---1000000000000169985--57765267523575114430346871677763


Q ss_pred             EEEEEEECCCCEEEEEECCCCCEEEEECCCCCCEEEECCCCCCEEEEEECCCCCEEEECCCCCCEEEEEECCCCCEEEEE
Q ss_conf             89831104894399996489918999468899313423899715787986699736623114630699941899979997
Q 001415          513 YSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAA  592 (1082)
Q Consensus       513 ~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~i~~~~~~~~~~~l~~~  592 (1082)
                      .+++|+++  +.++++++.|+.+++|+.........+..+...+..+.+++++......... ..........+..++++
T Consensus       147 ~~~~~~~~--~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~  223 (317)
T d1vyhc1         147 RMVRPNQD--GTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEAT-GSETKKSGKPGPFLLSG  223 (317)
T ss_dssp             EEEEECTT--SSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCC-SCC-------CCEEEEE
T ss_pred             EEEECCCC--CCEEEEEECCCEEEEEEECCCEEEEEEECCCCCCEEEEEEECCCCCEEECCC-CCEEEEECCCCCEEEEC
T ss_conf             00001667--9999999279829997512540347882477873379986325641110345-63034302588614751


Q ss_pred             ECCCEEEEEECCCCCEEEEEECCCCCCCCCEEEECCCCCEEEEEECCCCEEEEEECCC
Q ss_conf             0798299998788513799705999999680898699989999978996799980389
Q 001415          593 GDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG  650 (1082)
Q Consensus       593 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~iwd~~~~  650 (1082)
                      +.|+.|++|+..+++++..+..+..  .+.+++++|++++|++++.||.|++||+.++
T Consensus       224 ~~d~~i~~~~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~  279 (317)
T d1vyhc1         224 SRDKTIKMWDVSTGMCLMTLVGHDN--WVRGVLFHSGGKFILSCADDKTLRVWDYKNK  279 (317)
T ss_dssp             ETTSEEEEEETTTTEEEEEEECCSS--CEEEEEECSSSSCEEEEETTTEEEEECCTTS
T ss_pred             CCCCEEEEEECCCCCEEEEEECCCC--CEEEEEECCCCCEEEEEECCCEEEEEECCCC
T ss_conf             6997899988899968899968899--8799998799999999979894999999999

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=9.5e-38  Score=268.83  Aligned_cols=118  Identities=15%  Similarity=0.214  Sum_probs=55.5

Q ss_pred             CCCCCEEEEEEECCCCEEEEEECCCEEEEEECCCCCEEE--EEEEEECCCCCEEEEEECCCCCCEEEEEEECCCCEEEEE
Q ss_conf             989755599990299869999689819999944793134--779861566674499961799906999971799699998
Q 001415          418 DPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVR--QHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWD  495 (1082)
Q Consensus       418 ~h~~~V~~i~~spdg~~las~~~d~~i~iwd~~~~~~~~--~~~~~~~h~~~V~~i~fs~dg~~~~l~s~s~d~~i~iWd  495 (1082)
                      +|...|+|++|||+|++||+|+ ||.|+|||+.+.....  ......+|.+.|.+++|+|+++  +|++++.|+.|++||
T Consensus        49 ~H~~~V~~v~fs~~g~~latg~-dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~dg~--~l~s~~~dg~i~iwd  125 (337)
T d1gxra_          49 NHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGC--TLIVGGEASTLSIWD  125 (337)
T ss_dssp             CCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSS--EEEEEESSSEEEEEE
T ss_pred             CCCCCEEEEEECCCCCEEEEEE-CCEEEEEECCCCCCCCEEEEEEECCCCCCEEEEEECCCCC--EEEEEECCCCCCCCC
T ss_conf             9999289999989999999997-9988997736776331168764048899689999867998--898861233211111


Q ss_pred             CCCC--CEEEEEECCCCCEEEEEEEECCCCEEEEEECCCCCEEEEEC
Q ss_conf             4489--54699406886748983110489439999648991899946
Q 001415          496 ATNG--AKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLY  540 (1082)
Q Consensus       496 ~~~~--~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~  540 (1082)
                      +...  .....+..|...+..++|+++.  .++++++.|+.+++|++
T Consensus       126 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~s~~~d~~i~~~~~  170 (337)
T d1gxra_         126 LAAPTPRIKAELTSSAPACYALAISPDS--KVCFSCCSDGNIAVWDL  170 (337)
T ss_dssp             CCCC--EEEEEEECSSSCEEEEEECTTS--SEEEEEETTSCEEEEET
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCC--CCCCCCCCCCCCCCCCC
T ss_conf             1111111111111111111111111111--11111111111111111

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=6.7e-37  Score=263.01  Aligned_cols=340  Identities=17%  Similarity=0.294  Sum_probs=161.9

Q ss_pred             CCCCCCCE-EEEEEECCCCEEEEEECCCEEEEEECCCCCEEEEEEEEECCCCCEEEEEECCCCCCEEEEEEECCCCEEEE
Q ss_conf             36989755-59999029986999968981999994479313477986156667449996179990699997179969999
Q 001415          416 VKDPGVSV-NRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVW  494 (1082)
Q Consensus       416 ~~~h~~~V-~~i~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~V~~i~fs~dg~~~~l~s~s~d~~i~iW  494 (1082)
                      ++||...| +|+  ++|+++||+|+.|++|+|||+.+++.+.   ++.+|.+.|.+++|++++   ++++++.|++|++|
T Consensus         8 L~GH~~~vitc~--~~~~~~l~tgs~Dg~i~vWd~~~~~~~~---~l~~H~~~V~~l~~s~~~---~l~s~s~D~~i~iw   79 (355)
T d1nexb2           8 LRGHMTSVITCL--QFEDNYVITGADDKMIRVYDSINKKFLL---QLSGHDGGVWALKYAHGG---ILVSGSTDRTVRVW   79 (355)
T ss_dssp             EECCSSSCEEEE--EEETTEEEEEETTTEEEEEETTTTEEEE---EEECCSSCEEEEEEETTT---EEEEEETTCCEEEE
T ss_pred             ECCCCCCCEEEE--EECCCEEEEEECCCEEEEEECCCCCEEE---EEECCCCCEEEEEECCCC---EEEEEECCCCCCCC
T ss_conf             898378869999--9889999999189909999899993999---997899988999986999---99999645244321


Q ss_pred             ECCCCCEEEEEECCCCCEEEEEEEECCCCEEEEEECCCCCEEEEECCCCCCEEEECCCCCCEEEEEECCCC-CEEEECCC
Q ss_conf             84489546994068867489831104894399996489918999468899313423899715787986699-73662311
Q 001415          495 DATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADG-TRTYQGFR  573 (1082)
Q Consensus       495 d~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~-~~~~~~~~  573 (1082)
                      +.........................+++..+++++.|+.|++|++................. ....+.. ........
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~  158 (355)
T d1nexb2          80 DIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPL-VFHTPEENPYFVGVLR  158 (355)
T ss_dssp             ETTTTEEEEEECCCSSCEEEEEEEEETTEEEEEEEETTSEEEEEECCC-----------CCCE-EESCTTTCTTEEEEEE
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCEEEEECCCCCEECCCCCCCEECC-CEECCCCCCCEEEEEE
T ss_conf             111111111110011111111111112322045543888689998567730012465200010-0000112340121011


Q ss_pred             CCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCCCCCEEEECCCCCEEEEEECCCCEEEEEECCCCCC
Q ss_conf             46306999418999799970798299998788513799705999999680898699989999978996799980389411
Q 001415          574 KRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRL  653 (1082)
Q Consensus       574 ~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~iwd~~~~~~~  653 (1082)
                      ........+.++++.++++..|+.+++||+.+++.+.....+..  .+.++.+++++.++++++.|+.+++|+..++. .
T Consensus       159 ~~~~~v~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~-~  235 (355)
T d1nexb2         159 GHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTD--RIYSTIYDHERKRCISASMDTTIRIWDLENGE-L  235 (355)
T ss_dssp             CCSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSS--CEEEEEEETTTTEEEEEETTSCEEEEETTTCC-E
T ss_pred             ECCCCCCCCCCCCCEEEEECCCCEEEEEECCCCCCEEEEECCCC--CCCCCCCCCCCEEEECCCCCCEEEEEECCCCC-C
T ss_conf             00222100002563344211442044430131100011000123--32111111210021012456368763012211-1


Q ss_pred             EEECCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCE
Q ss_conf             01012443322333335679982114788860121169932289820357877422223467644664037999169751
Q 001415          654 LRTFENLAYDASRTSENSKNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNA  733 (1082)
Q Consensus       654 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~~~~  733 (1082)
                      ...+.                                                                           
T Consensus       236 ~~~~~---------------------------------------------------------------------------  240 (355)
T d1nexb2         236 MYTLQ---------------------------------------------------------------------------  240 (355)
T ss_dssp             EEEEC---------------------------------------------------------------------------
T ss_pred             CCCCC---------------------------------------------------------------------------
T ss_conf             11111---------------------------------------------------------------------------


Q ss_pred             EEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCEEEEECCCCEEEEEE-CCEEEEE
Q ss_conf             443126775999630332247998765555862018998620103468999998801899604998389940-9908998
Q 001415          734 ILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLF  812 (1082)
Q Consensus       734 l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~dg~~l~~~s-dg~i~iw  812 (1082)
                                                                        +|...|.+++++  ++++++++ ||.|++|
T Consensus       241 --------------------------------------------------~h~~~v~~~~~~--~~~l~~~~~dg~i~iw  268 (355)
T d1nexb2         241 --------------------------------------------------GHTALVGLLRLS--DKFLVSAAADGSIRGW  268 (355)
T ss_dssp             --------------------------------------------------CCSSCCCEEEEC--SSEEEEECTTSEEEEE
T ss_pred             --------------------------------------------------CCCCCCCCCCCC--CCEEEEEECCCCCCCC
T ss_conf             --------------------------------------------------111111111232--1003332011111111


Q ss_pred             ECCCCEEEEEECCCCCCEEEE-EEECCCCCEEEEEECCCCEEEEECCCCEEEE-EECCCCCCEEEEEEECCCCEEEEEEC
Q ss_conf             668980578977999980599-9905999579997479958999620331213-52235557899999579998999928
Q 001415          813 NMMTFKTMATFMPPPPAATFL-AFHPQDNNIIAIGMDDSSIQIYNVRVDEVKS-KLKGHSKRITGLAFSHALNVLVSSGA  890 (1082)
Q Consensus       813 d~~~~~~~~~~~~~~~~v~~i-~~sp~~~~~lasg~~dg~I~iwd~~~~~~~~-~l~~h~~~V~~i~~s~d~~~l~s~s~  890 (1082)
                      |+.+.......  |...+.++ .+++ ++.++++|+ |+.|++||+++++++. .+.+|.++|++++|+|+ .++++++.
T Consensus       269 d~~~~~~~~~~--~~~~~~~~~~~~~-~~~~l~~g~-d~~i~vwd~~tg~~~~~~~~~~~~~V~~v~~~~~-~~~~~~s~  343 (355)
T d1nexb2         269 DANDYSRKFSY--HHTNLSAITTFYV-SDNILVSGS-ENQFNIYNLRSGKLVHANILKDADQIWSVNFKGK-TLVAAVEK  343 (355)
T ss_dssp             ETTTCCEEEEE--ECTTCCCCCEEEE-CSSEEEEEE-TTEEEEEETTTCCBCCSCTTTTCSEEEEEEEETT-EEEEEEES
T ss_pred             CCCCCCEECCC--CCCCCEEEEEECC-CCCEEEEEE-CCEEEEEECCCCCEEEEEECCCCCCEEEEEECCC-EEEEEEEC
T ss_conf             11111100012--4688229999849-998999980-9979999999997988884589998999998399-19999989


Q ss_pred             CCCEEEEEC
Q ss_conf             994999995
Q 001415          891 DSQLCVWSS  899 (1082)
Q Consensus       891 Dg~I~iwd~  899 (1082)
                      ||++++|.+
T Consensus       344 dg~~~l~~~  352 (355)
T d1nexb2         344 DGQSFLEIL  352 (355)
T ss_dssp             SSCEEEEEE
T ss_pred             CCCEEEEEE
T ss_conf             890999999

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=1.9e-37  Score=266.78  Aligned_cols=161  Identities=15%  Similarity=0.136  Sum_probs=106.2

Q ss_pred             CCCCCEEEEEECCCCEEEEEECCCCCEEEEECCCCCEEEEECEEEECCCCCCCCCCCCCCCCCCCCEEEEEEECCCCEEE
Q ss_conf             89993288980589829999807991999972564135651116521577883211011369897555999902998699
Q 001415          357 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFG  436 (1082)
Q Consensus       357 h~~~v~~~~fspdg~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~i~~spdg~~la  436 (1082)
                      +.+.+.+++++|+|+. ++.+. ++.|.+|++.++.....                   +.+|.+.|++++|+|||++||
T Consensus        16 ~r~~~~~~a~~~~g~~-l~~~~-~~~v~i~~~~~~~~~~~-------------------~~~H~~~v~~~~~sp~g~~la   74 (311)
T d1nr0a1          16 ARGTAVVLGNTPAGDK-IQYCN-GTSVYTVPVGSLTDTEI-------------------YTEHSHQTTVAKTSPSGYYCA   74 (311)
T ss_dssp             CTTCCCCCEECTTSSE-EEEEE-TTEEEEEETTCSSCCEE-------------------ECCCSSCEEEEEECTTSSEEE
T ss_pred             CCCCEEEEEECCCCCE-EEEEE-CCEEEEEECCCCCEEEE-------------------ECCCCCCEEEEEEECCCCEEE
T ss_conf             7887599999699899-99996-99999999999966179-------------------747888889999948999672


Q ss_pred             EEECCCEEEEEECCCCCEEEEEEEEECCCCCEEEEEECCCCCCEEEEEEEC--CCCEEEEECCCCCEEEEEECCCCCEEE
Q ss_conf             996898199999447931347798615666744999617999069999717--996999984489546994068867489
Q 001415          437 VAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGD--DKTIKVWDATNGAKQYIFEGHEAPVYS  514 (1082)
Q Consensus       437 s~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~V~~i~fs~dg~~~~l~s~s~--d~~i~iWd~~~~~~~~~~~~h~~~v~~  514 (1082)
                      +|+.||.|++|++.++..... ..+.+|.++|.+++|+|+++  ++++++.  +..+++|++++++....+.+|...|.+
T Consensus        75 tg~~dg~i~iwd~~~~~~~~~-~~~~~~~~~v~~v~~s~d~~--~l~~~~~~~~~~~~v~~~~~~~~~~~l~~h~~~v~~  151 (311)
T d1nr0a1          75 SGDVHGNVRIWDTTQTTHILK-TTIPVFSGPVKDISWDSESK--RIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNS  151 (311)
T ss_dssp             EEETTSEEEEEESSSTTCCEE-EEEECSSSCEEEEEECTTSC--EEEEEECCSSCSEEEEETTTCCBCBCCCCCSSCEEE
T ss_pred             CCCCCCEEEEEEEECCCCCCC-CCCCCCCCCCCCCCCCCCCC--CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             255673674663101111000-01343357543323331110--001111221111111111111111111111111111


Q ss_pred             EEEEECCCCEEEEEECCCCCEEEEECCC
Q ss_conf             8311048943999964899189994688
Q 001415          515 VCPHHKENIQFIFSTALDGKIKAWLYDN  542 (1082)
Q Consensus       515 i~~~~~~~~~~l~s~~~dg~i~iwd~~~  542 (1082)
                      ++|+++.+ ..+++|+.|+.|++||+++
T Consensus       152 v~~~~~~~-~~l~sgs~d~~i~i~d~~~  178 (311)
T d1nr0a1         152 VDFKPSRP-FRIISGSDDNTVAIFEGPP  178 (311)
T ss_dssp             EEECSSSS-CEEEEEETTSCEEEEETTT
T ss_pred             CCCCCCCE-EEECCCCCCCCCCCCCCCC
T ss_conf             11121110-1200011221111111111

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=1.7e-37  Score=267.09  Aligned_cols=260  Identities=12%  Similarity=0.073  Sum_probs=141.6

Q ss_pred             CCCEEEEEECCCCEEEEEECCCCCEEEEECCCCCEEEEECEEEECCCCCCCCCCCCCCCCCCCCEEEEEEECCCCEEEEE
Q ss_conf             99328898058982999980799199997256413565111652157788321101136989755599990299869999
Q 001415          359 SSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVA  438 (1082)
Q Consensus       359 ~~v~~~~fspdg~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~i~~spdg~~las~  438 (1082)
                      ++|+|++|||||+ ++|+|+.||.|+||+..+++.....                 .+.+|.++|.+++|+|++++|+++
T Consensus         8 ~pIt~~~~s~dg~-~la~~~~~~~i~iw~~~~~~~~~~~-----------------~l~gH~~~V~~l~fsp~~~~l~s~   69 (371)
T d1k8kc_           8 EPISCHAWNKDRT-QIAICPNNHEVHIYEKSGNKWVQVH-----------------ELKEHNGQVTGVDWAPDSNRIVTC   69 (371)
T ss_dssp             SCCCEEEECTTSS-EEEEECSSSEEEEEEEETTEEEEEE-----------------EEECCSSCEEEEEEETTTTEEEEE
T ss_pred             CCEEEEEECCCCC-EEEEEECCCEEEEEECCCCCEEEEE-----------------EECCCCCCEEEEEECCCCCEEEEE
T ss_conf             8838999989999-9999948898999988899789999-----------------955889988899997999999999


Q ss_pred             ECCCEEEEEECCCCCEEEEEEEEECCCCCEEEEEECCCCCCEEEEEEECCCCEEEEECCCCCEE----EEEECCCCCEEE
Q ss_conf             6898199999447931347798615666744999617999069999717996999984489546----994068867489
Q 001415          439 YSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQ----YIFEGHEAPVYS  514 (1082)
Q Consensus       439 ~~d~~i~iwd~~~~~~~~~~~~~~~h~~~V~~i~fs~dg~~~~l~s~s~d~~i~iWd~~~~~~~----~~~~~h~~~v~~  514 (1082)
                      +.|+.|++|++.++... ....+.+|...|.+++|+|+++  .+++++.|+++++|++......    .....|...|.+
T Consensus        70 s~D~~i~vWd~~~~~~~-~~~~~~~~~~~v~~i~~~p~~~--~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~  146 (371)
T d1k8kc_          70 GTDRNAYVWTLKGRTWK-PTLVILRINRAARCVRWAPNEK--KFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLS  146 (371)
T ss_dssp             ETTSCEEEEEEETTEEE-EEEECCCCSSCEEEEEECTTSS--EEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEE
T ss_pred             ECCCEEEEEEECCCCCC-CCCCCCCCCCCCCCCCCCCCCC--CCEEECCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCC
T ss_conf             79993999862033211-0012232211000111111121--10000025763025442033433111001011122211


Q ss_pred             EEEEECCCCEEEEEECCCCCEEEEECCCCCCEEEECCCCCCEEEEEECCCCCEEEE-CCCCCCEEEEEECCCCCEEEEEE
Q ss_conf             83110489439999648991899946889931342389971578798669973662-31146306999418999799970
Q 001415          515 VCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQ-GFRKRSLGVVQFDTTKNRFLAAG  593 (1082)
Q Consensus       515 i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~-~~~~~~i~~~~~~~~~~~l~~~~  593 (1082)
                      ++|+|+  +.++++++.|+.+++|+................    ...+.+..... ..+...+..++|+|+++++++++
T Consensus       147 v~~~p~--~~~l~s~s~D~~v~v~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~  220 (371)
T d1k8kc_         147 LDWHPN--SVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWG----SKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVS  220 (371)
T ss_dssp             EEECTT--SSEEEEEETTSCEEEEECCCTTTSCCCCCBTTB----SCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEE
T ss_pred             CCCCCC--CCCEECCCCCCEEEEEEECCCCCCCCCCCCCCC----CCCCCEEEEEECCCCCCCEEEEEEECCCCCCCCCC
T ss_conf             111111--111000134767999840157643100122111----11111011244047667478987512332100001


Q ss_pred             CCCEEEEEECCCCCEEEEEECCCCCCCCCEEEECCCCCEEEEEECCCCEEEEEEC
Q ss_conf             7982999987885137997059999996808986999899999789967999803
Q 001415          594 DDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATS  648 (1082)
Q Consensus       594 ~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~iwd~~  648 (1082)
                      .|+.|++||+.+++.+..+..+..  ++.+++|+|+++++++| .|+.+++|...
T Consensus       221 ~d~~i~iwd~~~~~~~~~~~~~~~--~v~s~~fs~d~~~la~g-~d~~~~~~~~~  272 (371)
T d1k8kc_         221 HDSTVCLADADKKMAVATLASETL--PLLAVTFITESSLVAAG-HDCFPVLFTYD  272 (371)
T ss_dssp             TTTEEEEEEGGGTTEEEEEECSSC--CEEEEEEEETTEEEEEE-TTSSCEEEEEE
T ss_pred             CCCCCEEEEEECCCCEEEEECCCC--CCEEEEECCCCCEEEEE-CCCCEEEEEEE
T ss_conf             478605886410121000001466--52036546999799998-19926787760

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=1.3e-36  Score=261.10  Aligned_cols=202  Identities=16%  Similarity=0.165  Sum_probs=114.4

Q ss_pred             CCCCCCEEEEECCCCEEEEEEC---CEEEEEECCCCEEEEEECCCCCCEEEEEEECCCCC-EEEEEECCCCEEEEECCCC
Q ss_conf             9988018996049983899409---90899866898057897799998059999059995-7999747995899962033
Q 001415          785 PEEAVPCFALSKNDSYVMSASG---GKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNN-IIAIGMDDSSIQIYNVRVD  860 (1082)
Q Consensus       785 ~~~~i~~i~~s~dg~~l~~~sd---g~i~iwd~~~~~~~~~~~~~~~~v~~i~~sp~~~~-~lasg~~dg~I~iwd~~~~  860 (1082)
                      |...|.+++|+|++++++++++   ..+++|++++++....+.+|...|++++|+| ++. ++++|+.|+.|++||+.++
T Consensus       101 ~~~~v~~v~~s~d~~~l~~~~~~~~~~~~v~~~~~~~~~~~l~~h~~~v~~v~~~~-~~~~~l~sgs~d~~i~i~d~~~~  179 (311)
T d1nr0a1         101 FSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKP-SRPFRIISGSDDNTVAIFEGPPF  179 (311)
T ss_dssp             SSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCBCBCCCCCSSCEEEEEECS-SSSCEEEEEETTSCEEEEETTTB
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCEEEECCCCCCCCCCCCCCCCC
T ss_conf             35754332333111000111122111111111111111111111111111111121-11012000112211111111111


Q ss_pred             EEEEEECCCCCCEEEEEEECCCCEEEEEECCCCEEEEECCCCCCCCCEEEECCCCCCCCCCCCCEEEECCCCCEEEEEEC
Q ss_conf             12135223555789999957999899992899499999578631123021036899898899938998178849999936
Q 001415          861 EVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHE  940 (1082)
Q Consensus       861 ~~~~~l~~h~~~V~~i~~s~d~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~i~fspdg~~l~~~~d  940 (1082)
                      +....+.+|...|+++.|+|+++++++++.|+.|++|+...+                                      
T Consensus       180 ~~~~~~~~~~~~i~~v~~~p~~~~l~~~~~d~~v~~~d~~~~--------------------------------------  221 (311)
T d1nr0a1         180 KFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDG--------------------------------------  221 (311)
T ss_dssp             EEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTC--------------------------------------
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC--------------------------------------
T ss_conf             111111111111111234764221211111111100012446--------------------------------------


Q ss_pred             CEEEEEECCCCCEEEEEC-----CCCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCEEEEEECCCEECCCCCCCCC
Q ss_conf             829999726762100000-----279996544899868996699964688199984699603465278700378888987
Q 001415          941 TQLAIFETTKLECVKQWV-----PRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSN 1015 (1082)
Q Consensus       941 ~~i~iwd~~~~~~~~~~~-----~~~h~~~i~~i~~s~dg~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~~gh~~~~ 1015 (1082)
                                 .....+.     ..+|...|++++|+|++++|++++.||.|+|||+.+++++..+.       .|....
T Consensus       222 -----------~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~tgs~Dg~v~iwd~~t~~~~~~l~-------~~~~~~  283 (311)
T d1nr0a1         222 -----------TKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIP-------VGTRIE  283 (311)
T ss_dssp             -----------CEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE-------CCSSGG
T ss_pred             -----------CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCEEEEEECCCCCEEEEEE-------CCCCCC
T ss_conf             -----------41122211111110024653210247889999999379969999999996999997-------999863


Q ss_pred             CEEEEEEEECCCCCEEEEEECCCCEEEECCC
Q ss_conf             1016999708999769999518929999147
Q 001415         1016 VHPLVIAAHPQEPNEFALGLSDGGVHVFEPL 1046 (1082)
Q Consensus      1016 v~~~~~~~~~~d~~~l~s~~~dg~i~vW~~~ 1046 (1082)
                      ...+++.|.   ++.+++++.||.|++||++
T Consensus       284 ~~~~~~~~~---~~~l~s~s~dG~i~~wd~d  311 (311)
T d1nr0a1         284 DQQLGIIWT---KQALVSISANGFINFVNPE  311 (311)
T ss_dssp             GCEEEEEEC---SSCEEEEETTCCEEEEETT
T ss_pred             CEEEEEEEC---CCEEEEEECCCEEEEEECC
T ss_conf             329999951---9999999899979999588

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=3.9e-36  Score=257.81  Aligned_cols=265  Identities=14%  Similarity=0.164  Sum_probs=178.3

Q ss_pred             CCCEEEEEEECCCCEEEEEECCCEEEEEECCCCCEEEEEEEEECCCCCEEEEEECCCCCCEEEEEEECCCCEEEEECCCC
Q ss_conf             97555999902998699996898199999447931347798615666744999617999069999717996999984489
Q 001415          420 GVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNG  499 (1082)
Q Consensus       420 ~~~V~~i~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~V~~i~fs~dg~~~~l~s~s~d~~i~iWd~~~~  499 (1082)
                      ..+|+|++|||||++||+++.|+.|+||+..+++.. ....+.+|.++|.+++|+|+++  +|++++.|++|++||+.++
T Consensus         7 ~~pIt~~~~s~dg~~la~~~~~~~i~iw~~~~~~~~-~~~~l~gH~~~V~~l~fsp~~~--~l~s~s~D~~i~vWd~~~~   83 (371)
T d1k8kc_           7 VEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWV-QVHELKEHNGQVTGVDWAPDSN--RIVTCGTDRNAYVWTLKGR   83 (371)
T ss_dssp             SSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEE-EEEEEECCSSCEEEEEEETTTT--EEEEEETTSCEEEEEEETT
T ss_pred             CCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEE-EEEEECCCCCCEEEEEECCCCC--EEEEEECCCEEEEEEECCC
T ss_conf             988389999899999999948898999988899789-9999558899888999979999--9999979993999862033


Q ss_pred             CEE--EEEECCCCCEEEEEEEECCCCEEEEEECCCCCEEEEECCCCCCEEEECCCCCCEEEEEECCCCCEEEECCCCCCE
Q ss_conf             546--994068867489831104894399996489918999468899313423899715787986699736623114630
Q 001415          500 AKQ--YIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSL  577 (1082)
Q Consensus       500 ~~~--~~~~~h~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~i  577 (1082)
                      ...  ..+.+|...|.+++|+|++  +.+++++.|+.+++|+++......                              
T Consensus        84 ~~~~~~~~~~~~~~v~~i~~~p~~--~~l~~~s~d~~i~i~~~~~~~~~~------------------------------  131 (371)
T d1k8kc_          84 TWKPTLVILRINRAARCVRWAPNE--KKFAVGSGSRVISICYFEQENDWW------------------------------  131 (371)
T ss_dssp             EEEEEEECCCCSSCEEEEEECTTS--SEEEEEETTSSEEEEEEETTTTEE------------------------------
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCC--CCCEEECCCCCCEEEEEECCCCCC------------------------------
T ss_conf             211001223221100011111112--110000025763025442033433------------------------------


Q ss_pred             EEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCCCCCEEEECCCCCEEEEEECCCCEEEEEECCCCCCEEEC
Q ss_conf             69994189997999707982999987885137997059999996808986999899999789967999803894110101
Q 001415          578 GVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTF  657 (1082)
Q Consensus       578 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~iwd~~~~~~~~~~~  657 (1082)
                                                     ........+...+.+++|+|++++|++++.|+.+++|+....... ...
T Consensus       132 -------------------------------~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~D~~v~v~~~~~~~~~-~~~  179 (371)
T d1k8kc_         132 -------------------------------VCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVE-ERP  179 (371)
T ss_dssp             -------------------------------EEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTS-CCC
T ss_pred             -------------------------------CCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCEEEEEEECCCCCC-CCC
T ss_conf             -------------------------------111001011122211111111111000134767999840157643-100


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEC
Q ss_conf             24433223333356799821147888601211699322898203578774222234676446640379991697514431
Q 001415          658 ENLAYDASRTSENSKNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILAL  737 (1082)
Q Consensus       658 ~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~  737 (1082)
                      ...                                                                             
T Consensus       180 ~~~-----------------------------------------------------------------------------  182 (371)
T d1k8kc_         180 APT-----------------------------------------------------------------------------  182 (371)
T ss_dssp             CCB-----------------------------------------------------------------------------
T ss_pred             CCC-----------------------------------------------------------------------------
T ss_conf             122-----------------------------------------------------------------------------


Q ss_pred             CCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCEEEEECCCCEEEEEECCEEEEEECCCC
Q ss_conf             26775999630332247998765555862018998620103468999998801899604998389940990899866898
Q 001415          738 ASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTF  817 (1082)
Q Consensus       738 ~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~dg~~l~~~sdg~i~iwd~~~~  817 (1082)
                                                   .|+               ..                           ...+
T Consensus       183 -----------------------------~~~---------------~~---------------------------~~~~  191 (371)
T d1k8kc_         183 -----------------------------PWG---------------SK---------------------------MPFG  191 (371)
T ss_dssp             -----------------------------TTB---------------SC---------------------------CCTT
T ss_pred             -----------------------------CCC---------------CC---------------------------CCCE
T ss_conf             -----------------------------111---------------11---------------------------1110


Q ss_pred             EEEEEECCCCCCEEEEEEECCCCCEEEEEECCCCEEEEECCCCEEEEEECCCCCCEEEEEEECCCCEEEEEECCCCEEEE
Q ss_conf             05789779999805999905999579997479958999620331213522355578999995799989999289949999
Q 001415          818 KTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVW  897 (1082)
Q Consensus       818 ~~~~~~~~~~~~v~~i~~sp~~~~~lasg~~dg~I~iwd~~~~~~~~~l~~h~~~V~~i~~s~d~~~l~s~s~Dg~I~iw  897 (1082)
                      ........|...+.+++|+| ++++|++++.|+.|++||+.+++.+..+.+|..+|.+++|+||+++|++|. |+.+++|
T Consensus       192 ~~~~~~~~~~~~v~~~~~s~-~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~s~~fs~d~~~la~g~-d~~~~~~  269 (371)
T d1k8kc_         192 ELMFESSSSCGWVHGVCFSA-NGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFITESSLVAAGH-DCFPVLF  269 (371)
T ss_dssp             CEEEECCCCSSCEEEEEECS-SSSEEEEEETTTEEEEEEGGGTTEEEEEECSSCCEEEEEEEETTEEEEEET-TSSCEEE
T ss_pred             EEEEECCCCCCCEEEEEEEC-CCCCCCCCCCCCCCEEEEEECCCCEEEEECCCCCCEEEEECCCCCEEEEEC-CCCEEEE
T ss_conf             11244047667478987512-332100001478605886410121000001466520365469997999981-9926787


Q ss_pred             ECCC
Q ss_conf             9578
Q 001415          898 SSDG  901 (1082)
Q Consensus       898 d~~~  901 (1082)
                      ..+.
T Consensus       270 ~~~~  273 (371)
T d1k8kc_         270 TYDS  273 (371)
T ss_dssp             EEET
T ss_pred             EEEC
T ss_conf             7608

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=2.4e-35  Score=252.40  Aligned_cols=206  Identities=19%  Similarity=0.317  Sum_probs=120.0

Q ss_pred             ECCCCCCCEEEEEECCCCEEEEEECCCCCEEEEECCCCCEEEEECEEEECCCCCCCCCCCCCCCCCCCCEEEEEEECCCC
Q ss_conf             04789993288980589829999807991999972564135651116521577883211011369897555999902998
Q 001415          354 TLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGS  433 (1082)
Q Consensus       354 ~~~h~~~v~~~~fspdg~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~i~~spdg~  433 (1082)
                      +.+|.+.|++++|+|+++ +||+|+.||+|+|||+.+++.+..                   +..|...|.+++|+|++.
T Consensus        51 L~GH~~~I~~l~~s~~~~-~l~sgs~Dg~v~iWd~~~~~~~~~-------------------~~~~~~~v~~v~~~~~~~  110 (340)
T d1tbga_          51 LRGHLAKIYAMHWGTDSR-LLVSASQDGKLIIWDSYTTNKVHA-------------------IPLRSSWVMTCAYAPSGN  110 (340)
T ss_dssp             ECCCSSCEEEEEECTTSS-EEEEEETTTEEEEEETTTTEEEEE-------------------EECSCSCEEEEEECTTSS
T ss_pred             ECCCCCCEEEEEECCCCC-EEEEEECCCCEEEEECCCCEEEEE-------------------EECCCCCEEEEEEECCCE
T ss_conf             888789888999989999-999997899555631021025799-------------------724653377567601211


Q ss_pred             EEEEEECCCEEEEEECCCCCEE-EEEEEEECCCCCEEEEEECCCCCCEEEEEEECCCCEEEEECCCCCEEEEEECCCCCE
Q ss_conf             6999968981999994479313-477986156667449996179990699997179969999844895469940688674
Q 001415          434 LFGVAYSRHIVQIYSYHGGDEV-RQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPV  512 (1082)
Q Consensus       434 ~las~~~d~~i~iwd~~~~~~~-~~~~~~~~h~~~V~~i~fs~dg~~~~l~s~s~d~~i~iWd~~~~~~~~~~~~h~~~v  512 (1082)
                      ++++++.|+.+.+|+....... .....+.+|...........+.   .+.....|.....|.............+...+
T Consensus       111 ~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (340)
T d1tbga_         111 YVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDN---QIVTSSGDTTCALWDIETGQQTTTFTGHTGDV  187 (340)
T ss_dssp             EEEEEETTCCEEEEESSSSCSCCCEEEEECCCSSCEEEEEEEETT---EEEEEETTTEEEEEETTTTEEEEEEECCSSCE
T ss_pred             EEEEECCCCEEECCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCC---CCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEE
T ss_conf             443101332010133222212221110013542110111111111---11111244543200123221111123310157


Q ss_pred             EEEEEEECCCCEEEEEECCCCCEEEEECCCCCCEEEECCCCCCEEEEEECCCCCEEEECCCCCCEEEEEECCCCCEEEEE
Q ss_conf             89831104894399996489918999468899313423899715787986699736623114630699941899979997
Q 001415          513 YSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAA  592 (1082)
Q Consensus       513 ~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~i~~~~~~~~~~~l~~~  592 (1082)
                      ....+.                                                                 +....++++
T Consensus       188 ~~~~~~-----------------------------------------------------------------~~~~~~~~~  202 (340)
T d1tbga_         188 MSLSLA-----------------------------------------------------------------PDTRLFVSG  202 (340)
T ss_dssp             EEEEEC-----------------------------------------------------------------TTSSEEEEE
T ss_pred             EEECCC-----------------------------------------------------------------CCCCEEEEE
T ss_conf             630012-----------------------------------------------------------------442126876


Q ss_pred             ECCCEEEEEECCCCCEEEEEECCCCCCCCCEEEECCCCCEEEEEECCCCEEEEEECC
Q ss_conf             079829999878851379970599999968089869998999997899679998038
Q 001415          593 GDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSD  649 (1082)
Q Consensus       593 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~iwd~~~  649 (1082)
                      +.|+.|++||+.+++++..+..|..  .|.+++|+|+++++++++.|+.+++|+...
T Consensus       203 ~~d~~v~i~d~~~~~~~~~~~~h~~--~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~  257 (340)
T d1tbga_         203 ACDASAKLWDVREGMCRQTFTGHES--DINAICFFPNGNAFATGSDDATCRLFDLRA  257 (340)
T ss_dssp             ETTTEEEEEETTTTEEEEEECCCSS--CEEEEEECTTSSEEEEEETTSCEEEEETTT
T ss_pred             ECCCEEEEEECCCCCEEEEEECCCC--CEEEEEECCCCCEEEEEECCCEEEEEEECC
T ss_conf             0573699999999948899957889--858999979989999996999699975212

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1e-34  Score=248.19  Aligned_cols=195  Identities=19%  Similarity=0.280  Sum_probs=90.3

Q ss_pred             CCCCCCCCEEEEEEECCCCEEEEEECCCEEEEEECCCCCEEEEEEEEECCCCCEEEEEECCCCCCEEEEEEECCCCEEEE
Q ss_conf             13698975559999029986999968981999994479313477986156667449996179990699997179969999
Q 001415          415 LVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVW  494 (1082)
Q Consensus       415 ~~~~h~~~V~~i~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~V~~i~fs~dg~~~~l~s~s~d~~i~iW  494 (1082)
                      +++||.+.|.+ +++++|++||+|+.|++|+|||+.+++.+.   ++.+|.+.|.+++|+++    ++++++.|+.+++|
T Consensus        11 ~l~GH~~~V~s-~~~~~g~~l~sgs~Dg~i~vWd~~~~~~~~---~~~~h~~~V~~v~~~~~----~l~s~s~D~~~~~~   82 (342)
T d2ovrb2          11 VLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLR---TLVGHTGGVWSSQMRDN----IIISGSTDRTLKVW   82 (342)
T ss_dssp             EEECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCCEEE---ECCCCSSCEEEEEEETT----EEEEEETTSCEEEE
T ss_pred             EECCCCCCEEE-EEEECCCEEEEEECCCEEEEEECCCCCEEE---EEECCCCCEEEEEECCC----CCCCCEECCCCCCC
T ss_conf             98886875099-999789999999189909999899997999---99488999899994798----63210000011111


Q ss_pred             ECCCCCEEEEEECCCCCEEEEEEEECCCCEEEEEECCCCCEEEEECCCCCCEEEECCCCCCEEEEEECCCCCEEEECCCC
Q ss_conf             84489546994068867489831104894399996489918999468899313423899715787986699736623114
Q 001415          495 DATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRK  574 (1082)
Q Consensus       495 d~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~  574 (1082)
                      +............+...+......  .  ..+..+..|+.+.+|+..+......+.......                  
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~--~--~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~------------------  140 (342)
T d2ovrb2          83 NAETGECIHTLYGHTSTVRCMHLH--E--KRVVSGSRDATLRVWDIETGQCLHVLMGHVAAV------------------  140 (342)
T ss_dssp             ETTTTEEEEEECCCSSCEEEEEEE--T--TEEEEEETTSEEEEEESSSCCEEEEEECCSSCE------------------
T ss_pred             CCCCCCCEECCCCCCEEEEEEECC--C--CCCCCCCCCEEEEEEECCCCCCEEEEECCCCCC------------------
T ss_conf             111000000012333047652024--6--522123444037874035563001110011110------------------


Q ss_pred             CCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCCCCCEEEECCCCCEEEEEECCCCEEEEEEC
Q ss_conf             63069994189997999707982999987885137997059999996808986999899999789967999803
Q 001415          575 RSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATS  648 (1082)
Q Consensus       575 ~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~iwd~~  648 (1082)
                           .........++.++.++.+++|+......+..+..+.    .....+.+++.++++++.|+.|++|+..
T Consensus       141 -----~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~----~~~~~~~~~~~~l~s~~~dg~i~~~d~~  205 (342)
T d2ovrb2         141 -----RCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHT----NRVYSLQFDGIHVVSGSLDTSIRVWDVE  205 (342)
T ss_dssp             -----EEEEECSSCEEEEETTSCEEEEEGGGTEEEEEECCCS----SCEEEEEECSSEEEEEETTSCEEEEETT
T ss_pred             -----EEECCCCCEEEEECCCCEEEEEECCCCEEEEEECCCC----CCCCCCCCCCCEEEEEECCCEEEEEECC
T ss_conf             -----0000133302433589869995252343667872754----4421006899999999589939995255

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=5.7e-35  Score=249.83  Aligned_cols=284  Identities=17%  Similarity=0.268  Sum_probs=209.6

Q ss_pred             CCCCCCCCEEEEEEECCCCEEEEEECCCEEEEEECCCCCEEEEEEEEECCCCCEEEEEECCCCCCEEEEEEECCCCEEEE
Q ss_conf             13698975559999029986999968981999994479313477986156667449996179990699997179969999
Q 001415          415 LVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVW  494 (1082)
Q Consensus       415 ~~~~h~~~V~~i~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~V~~i~fs~dg~~~~l~s~s~d~~i~iW  494 (1082)
                      .+.||.+.|++++|+|++++||+|+.||.|+|||+.+++.+.   .+.+|...|.+++|+|++.  ++++++.|+.+++|
T Consensus        50 tL~GH~~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~~~~~---~~~~~~~~v~~v~~~~~~~--~l~~~~~d~~i~~~  124 (340)
T d1tbga_          50 TLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVH---AIPLRSSWVMTCAYAPSGN--YVACGGLDNICSIY  124 (340)
T ss_dssp             EECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEE---EEECSCSCEEEEEECTTSS--EEEEEETTCCEEEE
T ss_pred             EECCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCEEEE---EEECCCCCEEEEEEECCCE--EEEEECCCCEEECC
T ss_conf             988878988899998999999999789955563102102579---9724653377567601211--44310133201013


Q ss_pred             ECCCCC----EEEEEECCCCCEEEEEEEECCCCEEEEEECCCCCEEEEECCCCCCEEEECCCCCCEEEEEECCCCCEEEE
Q ss_conf             844895----4699406886748983110489439999648991899946889931342389971578798669973662
Q 001415          495 DATNGA----KQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQ  570 (1082)
Q Consensus       495 d~~~~~----~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~  570 (1082)
                      +.....    ....+.+|............   .                                              
T Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~----------------------------------------------  155 (340)
T d1tbga_         125 NLKTREGNVRVSRELAGHTGYLSCCRFLDD---N----------------------------------------------  155 (340)
T ss_dssp             ESSSSCSCCCEEEEECCCSSCEEEEEEEET---T----------------------------------------------
T ss_pred             CCCCCCCCCCCCEECCCCCCCCCCCCCCCC---C----------------------------------------------
T ss_conf             322221222111001354211011111111---1----------------------------------------------


Q ss_pred             CCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCCCCCEEEECCCCCEEEEEECCCCEEEEEECCC
Q ss_conf             31146306999418999799970798299998788513799705999999680898699989999978996799980389
Q 001415          571 GFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG  650 (1082)
Q Consensus       571 ~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~iwd~~~~  650 (1082)
                                       .+.....+.....+................  .+....+.+.+.+++++..|+.+++||..++
T Consensus       156 -----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~d~~v~i~d~~~~  216 (340)
T d1tbga_         156 -----------------QIVTSSGDTTCALWDIETGQQTTTFTGHTG--DVMSLSLAPDTRLFVSGACDASAKLWDVREG  216 (340)
T ss_dssp             -----------------EEEEEETTTEEEEEETTTTEEEEEEECCSS--CEEEEEECTTSSEEEEEETTTEEEEEETTTT
T ss_pred             -----------------CCCCCCCCCCCCCCCCCCCCCCCCCCCCCE--EEEEECCCCCCCEEEEEECCCEEEEEECCCC
T ss_conf             -----------------111112445432001232211111233101--5763001244212687605736999999999


Q ss_pred             CCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEEECCC
Q ss_conf             41101012443322333335679982114788860121169932289820357877422223467644664037999169
Q 001415          651 IRLLRTFENLAYDASRTSENSKNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNS  730 (1082)
Q Consensus       651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~  730 (1082)
                      . ....+.                                                                        
T Consensus       217 ~-~~~~~~------------------------------------------------------------------------  223 (340)
T d1tbga_         217 M-CRQTFT------------------------------------------------------------------------  223 (340)
T ss_dssp             E-EEEEEC------------------------------------------------------------------------
T ss_pred             C-EEEEEE------------------------------------------------------------------------
T ss_conf             4-889995------------------------------------------------------------------------


Q ss_pred             CCEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCEEEEECCCCEEEEEE-CCEE
Q ss_conf             751443126775999630332247998765555862018998620103468999998801899604998389940-9908
Q 001415          731 GNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKI  809 (1082)
Q Consensus       731 ~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~dg~~l~~~s-dg~i  809 (1082)
                                                                           +|...|.+++|+|+++++++++ |+.+
T Consensus       224 -----------------------------------------------------~h~~~i~~v~~~p~~~~l~s~s~d~~i  250 (340)
T d1tbga_         224 -----------------------------------------------------GHESDINAICFFPNGNAFATGSDDATC  250 (340)
T ss_dssp             -----------------------------------------------------CCSSCEEEEEECTTSSEEEEEETTSCE
T ss_pred             -----------------------------------------------------CCCCCEEEEEECCCCCEEEEEECCCEE
T ss_conf             -----------------------------------------------------788985899997998999999699969


Q ss_pred             EEEECCCCEEEEEEC--CCCCCEEEEEEECCCCCEEEEEECCCCEEEEECCCCEEEEEECCCCCCEEEEEEECCCCEEEE
Q ss_conf             998668980578977--999980599990599957999747995899962033121352235557899999579998999
Q 001415          810 SLFNMMTFKTMATFM--PPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVS  887 (1082)
Q Consensus       810 ~iwd~~~~~~~~~~~--~~~~~v~~i~~sp~~~~~lasg~~dg~I~iwd~~~~~~~~~l~~h~~~V~~i~~s~d~~~l~s  887 (1082)
                      ++|++........+.  .+...+++++|+| ++++|++|+.||.|++||+.+++++..+.+|.++|++++|+||+++|++
T Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~-~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~H~~~V~~l~~s~d~~~l~s  329 (340)
T d1tbga_         251 RLFDLRADQELMTYSHDNIICGITSVSFSK-SGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVAT  329 (340)
T ss_dssp             EEEETTTTEEEEEECCTTCCSCEEEEEECS-SSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEE
T ss_pred             EEEEECCCCCCCCCCCCCCCCCEEEEEECC-CCCEEEEEECCCEEEEEECCCCCEEEEECCCCCCEEEEEEECCCCEEEE
T ss_conf             997521221111111224457458999989-9999999979798999999999398998489997899999089999999


Q ss_pred             EECCCCEEEEE
Q ss_conf             92899499999
Q 001415          888 SGADSQLCVWS  898 (1082)
Q Consensus       888 ~s~Dg~I~iwd  898 (1082)
                      ++.||+|++||
T Consensus       330 ~s~Dg~v~iWd  340 (340)
T d1tbga_         330 GSWDSFLKIWN  340 (340)
T ss_dssp             EETTSCEEEEC
T ss_pred             ECCCCEEEEEC
T ss_conf             90699799859

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.5e-33  Score=240.13  Aligned_cols=78  Identities=24%  Similarity=0.381  Sum_probs=54.9

Q ss_pred             EEECCCCCEEEEEECCCCCCEEEEEEECCCCEEEEECCCCCEEEEEECCCCCEEEEEEEECCCCEEEEEECCCCCEEEEE
Q ss_conf             86156667449996179990699997179969999844895469940688674898311048943999964899189994
Q 001415          460 EIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWL  539 (1082)
Q Consensus       460 ~~~~h~~~V~~i~fs~dg~~~~l~s~s~d~~i~iWd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd  539 (1082)
                      .++||.+.|.+ +++++|+  +|+||+.|++|++||+.++++++++.+|.+.|.+++|.+    .++++++.|+.+++|+
T Consensus        11 ~l~GH~~~V~s-~~~~~g~--~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~~~----~~l~s~s~D~~~~~~~   83 (342)
T d2ovrb2          11 VLKGHDDHVIT-CLQFCGN--RIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRD----NIIISGSTDRTLKVWN   83 (342)
T ss_dssp             EEECSTTSCEE-EEEEETT--EEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEET----TEEEEEETTSCEEEEE
T ss_pred             EECCCCCCEEE-EEEECCC--EEEEEECCCEEEEEECCCCCEEEEEECCCCCEEEEEECC----CCCCCCEECCCCCCCC
T ss_conf             98886875099-9997899--999991899099998999979999948899989999479----8632100000111111


Q ss_pred             CCCCC
Q ss_conf             68899
Q 001415          540 YDNLG  544 (1082)
Q Consensus       540 ~~~~~  544 (1082)
                      .....
T Consensus        84 ~~~~~   88 (342)
T d2ovrb2          84 AETGE   88 (342)
T ss_dssp             TTTTE
T ss_pred             CCCCC
T ss_conf             11000

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=3.9e-34  Score=244.12  Aligned_cols=38  Identities=13%  Similarity=0.070  Sum_probs=14.6

Q ss_pred             CCCCCCCEEEEEEECCCCEEEEEECCCEEEEEECCCCC
Q ss_conf             36989755599990299869999689819999944793
Q 001415          416 VKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGD  453 (1082)
Q Consensus       416 ~~~h~~~V~~i~~spdg~~las~~~d~~i~iwd~~~~~  453 (1082)
                      +.||.+.|++++|+||+++||+|+.|+.|++||+.+++
T Consensus         8 ~~GH~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~   45 (299)
T d1nr0a2           8 RYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGI   45 (299)
T ss_dssp             ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCC
T ss_pred             CCCCCCCCEEEEECCCCCEEEEECCCCEEEEEECCCCC
T ss_conf             48888782899997999999999089929999999996

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=7.2e-33  Score=235.49  Aligned_cols=112  Identities=20%  Similarity=0.263  Sum_probs=54.9

Q ss_pred             CCCCCCEEEEECCCCEEEEEECCEEEEEECCCCEEEEEECCCCCCEEEEEEECCCCCEEEEEECCCCEEEEECCCCEEEE
Q ss_conf             99880189960499838994099089986689805789779999805999905999579997479958999620331213
Q 001415          785 PEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKS  864 (1082)
Q Consensus       785 ~~~~i~~i~~s~dg~~l~~~sdg~i~iwd~~~~~~~~~~~~~~~~v~~i~~sp~~~~~lasg~~dg~I~iwd~~~~~~~~  864 (1082)
                      +...+.++++++++++++++.++.+.+|+...  .....  ....+.+++|+| +++++++|+.||.|++||+.+++...
T Consensus        98 ~~~~~~~~~~s~~g~~~~~~~~~~i~~~~~~~--~~~~~--~~~~~~~~~~s~-~~~~l~~g~~dg~i~~~d~~~~~~~~  172 (299)
T d1nr0a2          98 LSSQPLGLAVSADGDIAVAACYKHIAIYSHGK--LTEVP--ISYNSSCVALSN-DKQFVAVGGQDSKVHVYKLSGASVSE  172 (299)
T ss_dssp             CSSCEEEEEECTTSSCEEEEESSEEEEEETTE--EEEEE--CSSCEEEEEECT-TSCEEEEEETTSEEEEEEEETTEEEE
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC--CCCCC--CCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             13443210011221111122222221111111--11101--111233221111-11111111111111111111111111


Q ss_pred             -EECCCCCCEEEEEEECCCCEEEEEECCCCEEEEECCC
Q ss_conf             -5223555789999957999899992899499999578
Q 001415          865 -KLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDG  901 (1082)
Q Consensus       865 -~l~~h~~~V~~i~~s~d~~~l~s~s~Dg~I~iwd~~~  901 (1082)
                       ....|...|++++|+|++++|++++.|+.|++|++.+
T Consensus       173 ~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~  210 (299)
T d1nr0a2         173 VKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVAN  210 (299)
T ss_dssp             EEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGG
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             11111111111111111111111111111111111111

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=3.9e-32  Score=230.51  Aligned_cols=251  Identities=15%  Similarity=0.205  Sum_probs=140.0

Q ss_pred             CCCEEEEEECCCCEEEEEECCCC-CEEEEECCCCCEEEEECEEEECCCCCCCCCCCCCCCCC-CCCEEEEEEEC--CCCE
Q ss_conf             99328898058982999980799-19999725641356511165215778832110113698-97555999902--9986
Q 001415          359 SSPMSMDFHPVQQTLLLVGTNVG-DIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDP-GVSVNRVIWSP--DGSL  434 (1082)
Q Consensus       359 ~~v~~~~fspdg~~llasgs~dg-~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h-~~~V~~i~~sp--dg~~  434 (1082)
                      ..+++++|+|+|+. ++.++.+. .|+.|+.........                 ..+.+| ...|++++|+|  ++.+
T Consensus        18 ~~~t~l~~~~~~~~-la~~~~~~~~i~~~~~~~~~~~~~-----------------~~~~gh~~~~v~~v~fsP~~~g~~   79 (325)
T d1pgua1          18 NFTTHLSYDPTTNA-IAYPCGKSAFVRCLDDGDSKVPPV-----------------VQFTGHGSSVVTTVKFSPIKGSQY   79 (325)
T ss_dssp             TCCCCCEEETTTTE-EEEEETTEEEEEECCSSCCSSCSE-----------------EEECTTTTSCEEEEEECSSTTCCE
T ss_pred             CCEEEEEECCCCCE-EEEEECCCEEEEEEECCCCCCCCE-----------------EEEECCCCCCEEEEEEEECCCCCE
T ss_conf             98479999899799-999969987999976888876502-----------------899078999889999811799979


Q ss_pred             EEEEECCCEEEEEECCCCCEEEE-----EEEEECCCCCEEEEEECCCCCCEEEEEEECCCCEEEEECCCCCEEEEEECCC
Q ss_conf             99996898199999447931347-----7986156667449996179990699997179969999844895469940688
Q 001415          435 FGVAYSRHIVQIYSYHGGDEVRQ-----HLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHE  509 (1082)
Q Consensus       435 las~~~d~~i~iwd~~~~~~~~~-----~~~~~~h~~~V~~i~fs~dg~~~~l~s~s~d~~i~iWd~~~~~~~~~~~~h~  509 (1082)
                      ||+|+.||+|+|||+..++....     ...+..|.++|.+++|+++++.+..++.+.++.+++|++.+++.+..+.+|.
T Consensus        80 lasgs~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~  159 (325)
T d1pgua1          80 LCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHS  159 (325)
T ss_dssp             EEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTCCEEEECCSCS
T ss_pred             EEEEECCCCEEEEEECCCCCEEEEECCCCCCCCCCCCCEEEEEECCCCCCCCEEECCCCCEEEEEEECCCCCCEEEEECC
T ss_conf             99994899779854058862156510025411365673779998999882201001244047888502331100120012


Q ss_pred             CCEEEEEEEECCCCEEEEEECCCCCEEEEECCCCCCEEEEC---CCCCCEEEEEECCCCCEEEECCCCCCEEEEEECCCC
Q ss_conf             67489831104894399996489918999468899313423---899715787986699736623114630699941899
Q 001415          510 APVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYE---APGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTK  586 (1082)
Q Consensus       510 ~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~---~~~~~v~~~~~s~d~~~~~~~~~~~~i~~~~~~~~~  586 (1082)
                      ..|.+++|++..+ ..+++++.|+.+++|+...........   .+...+.+++|+|++                    +
T Consensus       160 ~~v~~~~~~~~~~-~~~~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~~pd~--------------------~  218 (325)
T d1pgua1         160 QRINACHLKQSRP-MRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDS--------------------G  218 (325)
T ss_dssp             SCEEEEEECSSSS-CEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTT--------------------C
T ss_pred             CCCCCCCCCCCCC-CEEEEEECCCCCCCCCCCCCCCCEECCCCCCCCCCCEEEEECCCC--------------------C
T ss_conf             3432111123432-068886211122111122110000000015777752776303453--------------------1


Q ss_pred             CEEEEEECCCEEEEEECCCCCEEEEEECCCCCCCCCEEEEC---CCCCEEEEEECCCCEEEEEECCC
Q ss_conf             97999707982999987885137997059999996808986---99989999978996799980389
Q 001415          587 NRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFN---KDGCLLAVSTNDNGIKILATSDG  650 (1082)
Q Consensus       587 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s---~dg~~l~~~~~dg~i~iwd~~~~  650 (1082)
                      .++++++.|+.|++||..+++.+..+..+..  .+..+.|+   +++++|++++.|+.|++||+.++
T Consensus       219 ~~l~s~~~d~~i~iwd~~~~~~~~~l~~~~~--~v~~~~~s~~~~dg~~l~s~s~D~~i~iwd~~~~  283 (325)
T d1pgua1         219 EFVITVGSDRKISCFDGKSGEFLKYIEDDQE--PVQGGIFALSWLDSQKFATVGADATIRVWDVTTS  283 (325)
T ss_dssp             CEEEEEETTCCEEEEETTTCCEEEECCBTTB--CCCSCEEEEEESSSSEEEEEETTSEEEEEETTTT
T ss_pred             EECCCCCCCCCEEEEEECCCCCCCCCCCCCC--CCCCCEEEEECCCCCEEEEEECCCEEEEEECCCC
T ss_conf             0000112332101343001222111111111--1111000000368999999958993999999999

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=6.7e-32  Score=228.88  Aligned_cols=243  Identities=15%  Similarity=0.175  Sum_probs=122.0

Q ss_pred             CCCCEEEEEC--CCCEEEEEE-CCEEEEEECCCCEE--------EEEECCCCCCEEEEEEECCCCCEEEEEEC--CCCEE
Q ss_conf             8801899604--998389940-99089986689805--------78977999980599990599957999747--99589
Q 001415          787 EAVPCFALSK--NDSYVMSAS-GGKISLFNMMTFKT--------MATFMPPPPAATFLAFHPQDNNIIAIGMD--DSSIQ  853 (1082)
Q Consensus       787 ~~i~~i~~s~--dg~~l~~~s-dg~i~iwd~~~~~~--------~~~~~~~~~~v~~i~~sp~~~~~lasg~~--dg~I~  853 (1082)
                      ..+++++|+|  ++.++++++ ||.|++||+...+.        ...+..+.+.|.+++|++ +++++++++.  ++.+.
T Consensus        64 ~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~-~~~~l~~~~~~~~~~~~  142 (325)
T d1pgua1          64 SVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDF-EGRRLCVVGEGRDNFGV  142 (325)
T ss_dssp             SCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECT-TSSEEEEEECCSSCSEE
T ss_pred             CCEEEEEEEECCCCCEEEEEECCCCEEEEEECCCCCEEEEECCCCCCCCCCCCCEEEEEECC-CCCCCCEEECCCCCEEE
T ss_conf             98899998117999799999489977985405886215651002541136567377999899-98822010012440478


Q ss_pred             EEECCCCEEEEEECCCCCCEEEEEEECCCCE-EEEEECCCCEEEEECCCCCCCCCEEEECCCCCCCCCCCCCEEEECCC-
Q ss_conf             9962033121352235557899999579998-99992899499999578631123021036899898899938998178-
Q 001415          854 IYNVRVDEVKSKLKGHSKRITGLAFSHALNV-LVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQD-  931 (1082)
Q Consensus       854 iwd~~~~~~~~~l~~h~~~V~~i~~s~d~~~-l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~i~fspd-  931 (1082)
                      +|+..+++++..+.+|...|++++|+|++.+ +++++.|+.+++|+....+...  ......++.   ..+.+++|+|+ 
T Consensus       143 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~~--~~~~~~~~~---~~v~~v~~~pd~  217 (325)
T d1pgua1         143 FISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSA--SDRTHHKQG---SFVRDVEFSPDS  217 (325)
T ss_dssp             EEETTTCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEE--EECSSSCTT---CCEEEEEECSTT
T ss_pred             EEEECCCCCCEEEEECCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCE--ECCCCCCCC---CCCEEEEECCCC
T ss_conf             885023311001200123432111123432068886211122111122110000--000015777---752776303453


Q ss_pred             CCEEEE-EECCEEEEEECCCCCEEEEECCCCCCCCEEEEEEC---CCCCEEEEEECCCCEEEEECCCCEEEEEECCCEEC
Q ss_conf             849999-93682999972676210000027999654489986---89966999646881999846996034652787003
Q 001415          932 QIHFLV-VHETQLAIFETTKLECVKQWVPRESSAPITHATFS---CDSQLVYACFLDATVCVFSAANLKLRCRINPSAYL 1007 (1082)
Q Consensus       932 g~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~h~~~i~~i~~s---~dg~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~ 1007 (1082)
                      +.++++ +.|+.|++||..+++++..+.  +|..++.++.|+   +||++|++++.|+.|+|||+.+++++..+..+.. 
T Consensus       218 ~~~l~s~~~d~~i~iwd~~~~~~~~~l~--~~~~~v~~~~~s~~~~dg~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~-  294 (325)
T d1pgua1         218 GEFVITVGSDRKISCFDGKSGEFLKYIE--DDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQ-  294 (325)
T ss_dssp             CCEEEEEETTCCEEEEETTTCCEEEECC--BTTBCCCSCEEEEEESSSSEEEEEETTSEEEEEETTTTEEEEEEECCTT-
T ss_pred             CEECCCCCCCCCEEEEEECCCCCCCCCC--CCCCCCCCCEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEEECCC-
T ss_conf             1000011233210134300122211111--1111111100000036899999995899399999999978899995487-


Q ss_pred             CCCCCCCCCEEEEEEEECCCCCEEEEEECCCCEEEECC
Q ss_conf             78888987101699970899976999951892999914
Q 001415         1008 PAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEP 1045 (1082)
Q Consensus      1008 ~~gh~~~~v~~~~~~~~~~d~~~l~s~~~dg~i~vW~~ 1045 (1082)
                           ......+++.+.+  ...+++++.||.|++||+
T Consensus       295 -----~~~~~~~~~~~~~--~~~l~s~s~dg~i~vwdl  325 (325)
T d1pgua1         295 -----QLGNQQVGVVATG--NGRIISLSLDGTLNFYEL  325 (325)
T ss_dssp             -----CGGGCEEEEEEEE--TTEEEEEETTSCEEEEET
T ss_pred             -----CCCCEEEEEEECC--CCEEEEEECCCEEEEEEC
T ss_conf             -----4067699999889--999999979999999979

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=100.00  E-value=1.2e-30  Score=220.46  Aligned_cols=211  Identities=9%  Similarity=-0.005  Sum_probs=143.1

Q ss_pred             EEEECCCCE-EEEEECCCCCEEEEECCCCCEEEEECEEEECCCCCCCCCCCCCCCCCCCCEEEEEEECCCCEEEEEECCC
Q ss_conf             898058982-9999807991999972564135651116521577883211011369897555999902998699996898
Q 001415          364 MDFHPVQQT-LLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRH  442 (1082)
Q Consensus       364 ~~fspdg~~-llasgs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~i~~spdg~~las~~~d~  442 (1082)
                      ..++.|.+. ++++.+.||.|.|||+.+++.+.+                   +..| ..+..++|||||++|++++.|+
T Consensus        24 ~~~~~d~~~~~~V~~~~dg~v~vwD~~t~~~~~~-------------------l~~g-~~~~~vafSPDGk~l~~~~~d~   83 (426)
T d1hzua2          24 QLNDLDLPNLFSVTLRDAGQIALVDGDSKKIVKV-------------------IDTG-YAVHISRMSASGRYLLVIGRDA   83 (426)
T ss_dssp             CCSCCCGGGEEEEEETTTTEEEEEETTTCSEEEE-------------------EECC-SSEEEEEECTTSCEEEEEETTS
T ss_pred             CCCCCCCCEEEEEEECCCCEEEEEECCCCCEEEE-------------------EECC-CCEEEEEECCCCCEEEEEECCC
T ss_conf             0216798708999975999799999999959999-------------------9689-9803899989999999995899


Q ss_pred             EEEEEECCCCCEEEE--EEEEECCCCCEEEEEECCCCCCEEEEEEECCCCEEEEECCCCCEEEEEECCCCCEEEEEEEEC
Q ss_conf             199999447931347--798615666744999617999069999717996999984489546994068867489831104
Q 001415          443 IVQIYSYHGGDEVRQ--HLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHK  520 (1082)
Q Consensus       443 ~i~iwd~~~~~~~~~--~~~~~~h~~~V~~i~fs~dg~~~~l~s~s~d~~i~iWd~~~~~~~~~~~~h~~~v~~i~~~~~  520 (1082)
                      .|++||+.+++....  .....+|.+.+.+++|+|||+. +++++..++.+++||..++.++..+.++...+....+.+.
T Consensus        84 ~v~vwd~~t~~~~~~~~i~~~~~~~~~~~s~~~spDG~~-l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~  162 (426)
T d1hzua2          84 RIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRY-TIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPE  162 (426)
T ss_dssp             EEEEEETTSSSCEEEEEEECCSEEEEEEECCSTTCTTTE-EEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESC
T ss_pred             CEEEEECCCCCEEEEEEEECCCCCCCEEEEEEECCCCCE-EEEEECCCCEEEEECCCCCCEEEEEECCCCCCCCEEECCC
T ss_conf             889997568860489998678887645885002688987-9996358976999857764125786226777364364278


Q ss_pred             CCCEEEEEECCCCCEEEEECCCCCCEEEECCCCCCEEEEEECCCCCEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEE
Q ss_conf             89439999648991899946889931342389971578798669973662311463069994189997999707982999
Q 001415          521 ENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKF  600 (1082)
Q Consensus       521 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i  600 (1082)
                      +. ...+..+.|+...++...                                                    ..+.+.+
T Consensus       163 ~~-~~~i~~s~d~~~~~~~~~----------------------------------------------------~~~~i~~  189 (426)
T d1hzua2         163 PR-VAAIIASHEHPEFIVNVK----------------------------------------------------ETGKVLL  189 (426)
T ss_dssp             CC-EEEEEECSSSSEEEEEET----------------------------------------------------TTTEEEE
T ss_pred             CC-EEEEEECCCCCEEEEECC----------------------------------------------------CCCEEEE
T ss_conf             85-038998787878888527----------------------------------------------------8976999


Q ss_pred             EECCCCCEEEE-EECCCCCCCCCEEEECCCCCEEEEEECC-CCEEEEEECCC
Q ss_conf             98788513799-7059999996808986999899999789-96799980389
Q 001415          601 WDMDSVQLLTS-IDADGGLPASPRIRFNKDGCLLAVSTND-NGIKILATSDG  650 (1082)
Q Consensus       601 wd~~~~~~~~~-~~~~~~~~~i~~~~~s~dg~~l~~~~~d-g~i~iwd~~~~  650 (1082)
                      ++......... ....+  ..+..+.++|++++++++..+ ..+.+++..++
T Consensus       190 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~  239 (426)
T d1hzua2         190 VNYKDIDNLTVTSIGAA--PFLADGGWDSSHRYFMTAANNSNKVAVIDSKDR  239 (426)
T ss_dssp             EECSSSSSCEEEEEECC--SSEEEEEECTTSCEEEEEETTCSEEEEEETTTT
T ss_pred             EEECCCCCEEEEEECCC--CCCEEEEECCCCCEEEEEEECCCCEEEEECCCC
T ss_conf             99246652045775667--753761377888678864201100000002556

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=5.9e-30  Score=215.61  Aligned_cols=117  Identities=22%  Similarity=0.424  Sum_probs=76.3

Q ss_pred             CCCCCCEEEEECCCCEEEEEE-CCEEEEEECCCCEEEEEE------CCCCCCEEEEEEECCCCCEEEEEECCCC---EEE
Q ss_conf             998801899604998389940-990899866898057897------7999980599990599957999747995---899
Q 001415          785 PEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATF------MPPPPAATFLAFHPQDNNIIAIGMDDSS---IQI  854 (1082)
Q Consensus       785 ~~~~i~~i~~s~dg~~l~~~s-dg~i~iwd~~~~~~~~~~------~~~~~~v~~i~~sp~~~~~lasg~~dg~---I~i  854 (1082)
                      +...+.+++|+|++ ++++|+ |+.|++||+.+++++..+      .+|...|.+++|+| ++++|++|+.|++   |++
T Consensus       183 ~~~~~~~v~~s~dg-~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~sp-dg~~l~sgs~D~t~~~i~l  260 (393)
T d1sq9a_         183 PSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSP-QGSLLAIAHDSNSFGCITL  260 (393)
T ss_dssp             SCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECS-STTEEEEEEEETTEEEEEE
T ss_pred             CCCCEEEEEECCCC-EEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCCEEEECCCCC-CCCEEEEECCCCCCCEEEE
T ss_conf             89867899978999-899993898299986023321100001111124256387700466-5320112428988421001


Q ss_pred             EECCCCEEEEEE-------------CCCCCCEEEEEEECCCCEEEEEECCCCEEEEECCCCC
Q ss_conf             962033121352-------------2355578999995799989999289949999957863
Q 001415          855 YNVRVDEVKSKL-------------KGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWE  903 (1082)
Q Consensus       855 wd~~~~~~~~~l-------------~~h~~~V~~i~~s~d~~~l~s~s~Dg~I~iwd~~~~~  903 (1082)
                      ||+.+++++..+             .+|.+.|++++|+||+++|+|++.|++|++||+.+++
T Consensus       261 wd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~~v~vWd~~~g~  322 (393)
T d1sq9a_         261 YETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKE  322 (393)
T ss_dssp             EETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTE
T ss_pred             CCCCCCEEEEEECCCCCCCCCEEEEECCCCCEEEECCCCCCCEEEEECCCCEEEEEECCCCC
T ss_conf             03532134443115666643102320235866600138988806987799989999999997

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.5e-29  Score=212.76  Aligned_cols=126  Identities=12%  Similarity=0.016  Sum_probs=89.7

Q ss_pred             CCCCCCCCEEEEEEECCCCEEEEEECCCEEEEEECCCCCEEEEEEEEECCCCCEEEEEECCCCCCEEEEEEECCCCEEEE
Q ss_conf             13698975559999029986999968981999994479313477986156667449996179990699997179969999
Q 001415          415 LVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVW  494 (1082)
Q Consensus       415 ~~~~h~~~V~~i~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~V~~i~fs~dg~~~~l~s~s~d~~i~iW  494 (1082)
                      +..+|.+.|++|+|||++++||+|+.|++|+|||+..+..........+|.++|.+++|++++.. ++++|+.|+.|++|
T Consensus         6 ~~~~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~-~l~sg~~d~~v~~w   84 (342)
T d1yfqa_           6 IEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDL-QIYVGTVQGEILKV   84 (342)
T ss_dssp             CSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSE-EEEEEETTSCEEEE
T ss_pred             CCCCCCCCEEEEEEECCCCEEEEEECCCEEEEEECCCCCCCEEEEEECCCCCCEEEEEEECCCCC-EEEECCCCCCEEEE
T ss_conf             68899897888999589999999979992999975699863689885589998899999589997-89981265311454


Q ss_pred             ECCCCCEEEEEECCCCCEEEEEEEECCCCEEEEEECCCCCEEEEECCC
Q ss_conf             844895469940688674898311048943999964899189994688
Q 001415          495 DATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDN  542 (1082)
Q Consensus       495 d~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~  542 (1082)
                      ++..+........+........+.... ...+++++.++.+++||++.
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~wd~~~  131 (342)
T d1yfqa_          85 DLIGSPSFQALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRN  131 (342)
T ss_dssp             CSSSSSSEEECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHH
T ss_pred             ECCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCEEECCC
T ss_conf             204432000001111111111111111-11111101222111020234

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=100.00  E-value=9.4e-31  Score=221.07  Aligned_cols=202  Identities=16%  Similarity=0.126  Sum_probs=157.0

Q ss_pred             EEEEEEC-CCCEEEEEECCCCCEEEEECCCCCEEEEECEEEECCCCCCCCCCCCCCCCCCCCEEEEEEECCCCEEEEEEC
Q ss_conf             2889805-898299998079919999725641356511165215778832110113698975559999029986999968
Q 001415          362 MSMDFHP-VQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYS  440 (1082)
Q Consensus       362 ~~~~fsp-dg~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~i~~spdg~~las~~~  440 (1082)
                      ....||| ||++ +|+++ +|.|++||..++....                    + +|...|.+++|||||++|++++.
T Consensus         6 ~~~~fSP~dG~~-~a~~~-~g~v~v~d~~~~~~~~--------------------~-~~~~~v~~~~~spDg~~l~~~~~   62 (360)
T d1k32a3           6 FAEDFSPLDGDL-IAFVS-RGQAFIQDVSGTYVLK--------------------V-PEPLRIRYVRRGGDTKVAFIHGT   62 (360)
T ss_dssp             GEEEEEECGGGC-EEEEE-TTEEEEECTTSSBEEE--------------------C-SCCSCEEEEEECSSSEEEEEEEE
T ss_pred             HCCCCCCCCCCE-EEEEE-CCEEEEEECCCCCEEE--------------------C-CCCCCEEEEEECCCCCEEEEEEC
T ss_conf             005146889999-99998-9969999899994899--------------------1-69998888999899999999992


Q ss_pred             CC--EEEEEECCCCCEEEEEEEEECCCCCEEEEEECCCCCCEEEEEEECCCCEEEEECCCCCEEEEEECCCCCEEEEEEE
Q ss_conf             98--1999994479313477986156667449996179990699997179969999844895469940688674898311
Q 001415          441 RH--IVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPH  518 (1082)
Q Consensus       441 d~--~i~iwd~~~~~~~~~~~~~~~h~~~V~~i~fs~dg~~~~l~s~s~d~~i~iWd~~~~~~~~~~~~h~~~v~~i~~~  518 (1082)
                      +.  .|++|+..+++..    .+..|...|.+++|+|+|+  ++++++.++.+++|++.+++....+..|...+.+++|+
T Consensus        63 ~~g~~v~v~d~~~~~~~----~~~~~~~~v~~~~~spdg~--~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s  136 (360)
T d1k32a3          63 REGDFLGIYDYRTGKAE----KFEENLGNVFAMGVDRNGK--FAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTIS  136 (360)
T ss_dssp             TTEEEEEEEETTTCCEE----ECCCCCCSEEEEEECTTSS--EEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEEC
T ss_pred             CCCCEEEEEECCCCCEE----EEECCCCEEEEEEECCCCC--CCCEECCCCCCCCCCCCCCCEEEEEECCCCCCCCHHHC
T ss_conf             89989999989999488----7508971277412114543--21000111110000012221000000135520230121


Q ss_pred             ECCCCEEEEEECCCCCEEEEECCCCCCEEEECCCCCCEEEEEECCCCCEEEECCCCCCEEEEEECCCCCEEEEEECCCEE
Q ss_conf             04894399996489918999468899313423899715787986699736623114630699941899979997079829
Q 001415          519 HKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSI  598 (1082)
Q Consensus       519 ~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i  598 (1082)
                      +++  ++|+.+..+...                                                     ...+..++.+
T Consensus       137 pdg--~~la~~~~~~~~-----------------------------------------------------~~~~~~~~~~  161 (360)
T d1k32a3         137 DNS--RFIAYGFPLKHG-----------------------------------------------------ETDGYVMQAI  161 (360)
T ss_dssp             TTS--CEEEEEEEECSS-----------------------------------------------------TTCSCCEEEE
T ss_pred             CCE--EEEEEECCCCCC-----------------------------------------------------CEEECCCCCE
T ss_conf             322--566521233121-----------------------------------------------------1000256542


Q ss_pred             EEEECCCCCEEEEEECCCCCCCCCEEEECCCCCEEEEEECCCCEEEEEECCC
Q ss_conf             9998788513799705999999680898699989999978996799980389
Q 001415          599 KFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG  650 (1082)
Q Consensus       599 ~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~iwd~~~~  650 (1082)
                      ++|+..+++........   ..+..++|+|+|++|++++.++.+.+|+....
T Consensus       162 ~v~d~~~~~~~~~~~~~---~~~~~~~~spdg~~l~~~s~~~~~~~~d~~~~  210 (360)
T d1k32a3         162 HVYDMEGRKIFAATTEN---SHDYAPAFDADSKNLYYLSYRSLDPSPDRVVL  210 (360)
T ss_dssp             EEEETTTTEEEECSCSS---SBEEEEEECTTSCEEEEEESCCCCCEECSSSS
T ss_pred             EEECCCCCCEEEECCCC---CCCCCCCCCCCCCEEEEEECCCCEECCCCCCC
T ss_conf             66304557135303543---22110012577999999959985575333544

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=100.00  E-value=4.4e-29  Score=209.66  Aligned_cols=362  Identities=10%  Similarity=0.001  Sum_probs=217.1

Q ss_pred             EEEEECCCCCEEEEECCCCCEEEEECEEEECCCCCCCCCCCCCCCCCCCCEEEEEEECCCCEEEEEECCCEEEEEECCCC
Q ss_conf             99998079919999725641356511165215778832110113698975559999029986999968981999994479
Q 001415          373 LLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGG  452 (1082)
Q Consensus       373 llasgs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~i~~spdg~~las~~~d~~i~iwd~~~~  452 (1082)
                      ++++.+.+|.|.|||..+++.+.+                   +..+ ..+..++|||||+++++++.|+.+.+||+.++
T Consensus        34 ~~v~~~d~g~v~v~D~~t~~v~~~-------------------~~~g-~~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~   93 (432)
T d1qksa2          34 FSVTLRDAGQIALIDGSTYEIKTV-------------------LDTG-YAVHISRLSASGRYLFVIGRDGKVNMIDLWMK   93 (432)
T ss_dssp             EEEEETTTTEEEEEETTTCCEEEE-------------------EECS-SCEEEEEECTTSCEEEEEETTSEEEEEETTSS
T ss_pred             EEEEECCCCEEEEEECCCCCEEEE-------------------EECC-CCEEEEEECCCCCEEEEECCCCCEEEEEEECC
T ss_conf             999976999799998999839999-------------------7379-97137998899999999828999789981089


Q ss_pred             CEE--EEEEEEECCCCCEEEEEECCCCCCEEEEEEECCCCEEEEECCCCCEEEEEECCCCCEEEEEEEECCCCEEEEEEC
Q ss_conf             313--477986156667449996179990699997179969999844895469940688674898311048943999964
Q 001415          453 DEV--RQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTA  530 (1082)
Q Consensus       453 ~~~--~~~~~~~~h~~~V~~i~fs~dg~~~~l~s~s~d~~i~iWd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~  530 (1082)
                      +..  ..+....+|.+.+.+.+|+|||+. ++++++.++++++||..+++++..+..+...+....+.+.+.        
T Consensus        94 ~~~~~~~i~~~~~~~~~~~s~~~SpDG~~-l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~--------  164 (432)
T d1qksa2          94 EPTTVAEIKIGSEARSIETSKMEGWEDKY-AIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPR--------  164 (432)
T ss_dssp             SCCEEEEEECCSEEEEEEECCSTTCTTTE-EEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCC--------
T ss_pred             CCEEEEEEECCCCCCCEEEECCCCCCCCE-EEEECCCCCEEEEEECCCCCCEEEECCCCCCCCCEECCCCCC--------
T ss_conf             81288998448898776984321888888-999817898279990765542254024776435220168885--------


Q ss_pred             CCCCEEEEECCCCCCEEEECCCCCCEEEEEECCCCCEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEE
Q ss_conf             89918999468899313423899715787986699736623114630699941899979997079829999878851379
Q 001415          531 LDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLT  610 (1082)
Q Consensus       531 ~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~  610 (1082)
                                               ...+.+++++..                    .+++...++.|.+|+..+.+...
T Consensus       165 -------------------------~~~v~~s~dg~~--------------------~~vs~~~~~~i~~~d~~~~~~~~  199 (432)
T d1qksa2         165 -------------------------VAAILASHYRPE--------------------FIVNVKETGKILLVDYTDLNNLK  199 (432)
T ss_dssp             -------------------------EEEEEECSSSSE--------------------EEEEETTTTEEEEEETTCSSEEE
T ss_pred             -------------------------EEEEEECCCCCE--------------------EEEEECCCCEEEEEECCCCCCCE
T ss_conf             -------------------------058998789998--------------------99998168829999843787522


Q ss_pred             EEECCCCCCCCCEEEECCCCCEEEEEECC-CCEEEEEECCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEC
Q ss_conf             97059999996808986999899999789-96799980389411010124433223333356799821147888601211
Q 001415          611 SIDADGGLPASPRIRFNKDGCLLAVSTND-NGIKILATSDGIRLLRTFENLAYDASRTSENSKNGDVRSLADVKPRITEE  689 (1082)
Q Consensus       611 ~~~~~~~~~~i~~~~~s~dg~~l~~~~~d-g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~  689 (1082)
                      ......+ ..+..++|+|+|+++++++.+ +.+.+++..++ .............                         
T Consensus       200 ~~~i~~g-~~~~~~~~spdg~~~~va~~~~~~v~v~d~~~~-~~~~~~~~g~~~~-------------------------  252 (432)
T d1qksa2         200 TTEISAE-RFLHDGGLDGSHRYFITAANARNKLVVIDTKEG-KLVAIEDTGGQTP-------------------------  252 (432)
T ss_dssp             EEEEECC-SSEEEEEECTTSCEEEEEEGGGTEEEEEETTTT-EEEEEEECSSSSB-------------------------
T ss_pred             EEEECCC-CCCCCCEECCCCCEEEEECCCCCEEEEEECCCC-EEEEEECCCCCCC-------------------------
T ss_conf             7998336-754265388988799995166636777614452-6888721486224-------------------------


Q ss_pred             CCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEECC-CCCEEEEEECCCCCCCCCCCCCCCCCCCCC
Q ss_conf             6993228982035787742222346764466403799916975144312-677599963033224799876555586201
Q 001415          690 SNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALA-SNAIHLLWKWQRTERNSSGKATASVAPQLW  768 (1082)
Q Consensus       690 ~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~-~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~  768 (1082)
                                                  +........+...+....... .++.+.+|......                
T Consensus       253 ----------------------------~~~~~~~~~~~~~g~~~~~~~lg~~~v~~~~~~~~~----------------  288 (432)
T d1qksa2         253 ----------------------------HPGRGANFVHPTFGPVWATSHMGDDSVALIGTDPEG----------------  288 (432)
T ss_dssp             ----------------------------CCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTTT----------------
T ss_pred             ----------------------------CCCCCCCEECCCCCCEECCCCCCCCEEEECCCCCCC----------------
T ss_conf             ----------------------------567664101489883102135688358762456655----------------


Q ss_pred             CCCCCCEEECCCCCCCCCCCCCEEEEECCCCEEEEEE-CCEEEEEECCCCEEEEEECCCCCCEEEEEEECCCCCEEEEEE
Q ss_conf             8998620103468999998801899604998389940-990899866898057897799998059999059995799974
Q 001415          769 QPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGM  847 (1082)
Q Consensus       769 ~~~~~~~~~~~~~~~~~~~~i~~i~~s~dg~~l~~~s-dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~sp~~~~~lasg~  847 (1082)
                                   ...+...+....+++++..+++++ ++..++|.......      +......+++ | |++.+++++
T Consensus       289 -------------~~~~~~~v~~~~~~~~g~~~~~~s~p~~~~lw~~~~~~~------~~~~~~sv~v-p-Dg~~la~~s  347 (432)
T d1qksa2         289 -------------HPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNP------EAEISGSVAV-F-DIKAMTGDG  347 (432)
T ss_dssp             -------------CTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCS------SHHHHTCEEE-E-EGGGCCCSS
T ss_pred             -------------CCCCCCEEEEEEECCCCCEEEEEECCCCCCEEECCCCCC------CCCEEEEEEE-E-ECHHHCCCC
T ss_conf             -------------546565777998868997688872688641021126788------8770359999-9-624610455


Q ss_pred             CCCCEEEEECCCCEEEEEECCCCCCEEEEEEECCCCEEEEEE-----CCCCEEEEECCCCC
Q ss_conf             799589996203312135223555789999957999899992-----89949999957863
Q 001415          848 DDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSG-----ADSQLCVWSSDGWE  903 (1082)
Q Consensus       848 ~dg~I~iwd~~~~~~~~~l~~h~~~V~~i~~s~d~~~l~s~s-----~Dg~I~iwd~~~~~  903 (1082)
                      .|+.+++|++.++..   +..|...|.+++|||||++++.+.     .++.|+|||..+.+
T Consensus       348 ~d~~~k~w~~~~~~~---l~~~~~~v~~~~fS~DG~~v~~S~~~~~~~~g~i~i~D~~T~k  405 (432)
T d1qksa2         348 SDPEFKTLPIAEWAG---ITEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDDKTLE  405 (432)
T ss_dssp             SCCCEEEECHHHHHT---CCSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEETTTTE
T ss_pred             CCCCEEECCCCCCCC---CCCCCCCEEEEEECCCCCEEEEEEECCCCCCCCEEEEECCCCE
T ss_conf             678448633434444---5789986897679899999999970488888868999999955

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.7e-29  Score=212.49  Aligned_cols=104  Identities=16%  Similarity=0.218  Sum_probs=63.5

Q ss_pred             CCCCCCEEEEECCCCEEEEEE-CC---EEEEEECCCCEEEEEEC-------------CCCCCEEEEEEECCCCCEEEEEE
Q ss_conf             998801899604998389940-99---08998668980578977-------------99998059999059995799974
Q 001415          785 PEEAVPCFALSKNDSYVMSAS-GG---KISLFNMMTFKTMATFM-------------PPPPAATFLAFHPQDNNIIAIGM  847 (1082)
Q Consensus       785 ~~~~i~~i~~s~dg~~l~~~s-dg---~i~iwd~~~~~~~~~~~-------------~~~~~v~~i~~sp~~~~~lasg~  847 (1082)
                      |...|.+++|+|||++|++++ |+   .|++||+.+++.+..+.             +|...|++++|+| ++++|++|+
T Consensus       230 h~~~V~~l~~spdg~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fsp-d~~~l~S~s  308 (393)
T d1sq9a_         230 NSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFND-SGETLCSAG  308 (393)
T ss_dssp             CCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECS-SSSEEEEEE
T ss_pred             CCCEEEECCCCCCCCEEEEECCCCCCCEEEECCCCCCEEEEEECCCCCCCCCEEEEECCCCCEEEECCCC-CCCEEEEEC
T ss_conf             2563877004665320112428988421001035321344431156666431023202358666001389-888069877


Q ss_pred             CCCCEEEEECCCCEEEEEECCCCCCEE----EEEEECCCCEEEEEE
Q ss_conf             799589996203312135223555789----999957999899992
Q 001415          848 DDSSIQIYNVRVDEVKSKLKGHSKRIT----GLAFSHALNVLVSSG  889 (1082)
Q Consensus       848 ~dg~I~iwd~~~~~~~~~l~~h~~~V~----~i~~s~d~~~l~s~s  889 (1082)
                      .|++|++||+.+++++.++.+|.+.|.    .++|++++..+++++
T Consensus       309 ~D~~v~vWd~~~g~~~~~l~gH~~~v~~~~~~~~~~~~~~~~~~~~  354 (393)
T d1sq9a_         309 WDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPG  354 (393)
T ss_dssp             TTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCC
T ss_pred             CCCEEEEEECCCCCEEEEECCCCCCCCCCCCEEEECCCCCEEEECC
T ss_conf             9998999999999799999886876137734899999999999831

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.98  E-value=3.2e-27  Score=196.98  Aligned_cols=232  Identities=18%  Similarity=0.298  Sum_probs=125.0

Q ss_pred             CCCCCCEEEEEECCCCEEEEEECCCCCEEEEECCCCCEEEEECEEEECCCCCCCCCCCCCCCCCCCCEEEEEEECCCCEE
Q ss_conf             78999328898058982999980799199997256413565111652157788321101136989755599990299869
Q 001415          356 NQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLF  435 (1082)
Q Consensus       356 ~h~~~v~~~~fspdg~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~i~~spdg~~l  435 (1082)
                      +|...|+|++  +||+ +||+|+.||+|+|||+.+++.+.+                   +.+|.+.|++++|  ++++|
T Consensus        13 ~~~~~V~c~~--~d~~-~l~sgs~Dg~i~vWd~~~~~~~~~-------------------l~~H~~~V~~v~~--~~~~l   68 (293)
T d1p22a2          13 ETSKGVYCLQ--YDDQ-KIVSGLRDNTIKIWDKNTLECKRI-------------------LTGHTGSVLCLQY--DERVI   68 (293)
T ss_dssp             SSCCCEEEEE--CCSS-EEEEEESSSCEEEEESSSCCEEEE-------------------ECCCSSCEEEEEC--CSSEE
T ss_pred             CCCCCEEEEE--ECCC-EEEEEECCCEEEEEECCCCCEEEE-------------------EECCCCCEEEEEC--CCCEE
T ss_conf             9999889998--7699-999992899399999999919999-------------------9267787763423--63002


Q ss_pred             EEEECCCEEEEEECCCCCEEEEEEEEECCCCCEEEEEECCCCCCEEEEEEECCCCEEEEECCCCCE---EEEEECCCCCE
Q ss_conf             999689819999944793134779861566674499961799906999971799699998448954---69940688674
Q 001415          436 GVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAK---QYIFEGHEAPV  512 (1082)
Q Consensus       436 as~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~V~~i~fs~dg~~~~l~s~s~d~~i~iWd~~~~~~---~~~~~~h~~~v  512 (1082)
                      ++|+.|+.|++|++..+....   ....+...  ...+.+...  .++++..++.+.+|+......   ...+..|...+
T Consensus        69 ~s~s~D~~i~~~~~~~~~~~~---~~~~~~~~--~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  141 (293)
T d1p22a2          69 ITGSSDSTVRVWDVNTGEMLN---TLIHHCEA--VLHLRFNNG--MMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAV  141 (293)
T ss_dssp             EEEETTSCEEEEESSSCCEEE---EECCCCSC--EEEEECCTT--EEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCE
T ss_pred             ECCCCCCCCCCCCCCCCCCCC---CCCCCCCC--CCCCCCCCC--CEEECCCCCCEEEEECCCCCCCCCCCCCCCCCCCC
T ss_conf             100111011000002464100---11111100--001111110--00001356630686134454442121000113543


Q ss_pred             EEEEEEECCCCEEEEEECCCCCEEEEECCCCCCEEEECCCCCCEEEEEECCCCCEEEECCCCCCEEEEEECCCCCEEEEE
Q ss_conf             89831104894399996489918999468899313423899715787986699736623114630699941899979997
Q 001415          513 YSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAA  592 (1082)
Q Consensus       513 ~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~i~~~~~~~~~~~l~~~  592 (1082)
                      ....+.  .  ..+++++.|+.+++||..+......+..+...+..+.++                       +..++++
T Consensus       142 ~~~~~~--~--~~~~~~s~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~-----------------------~~~l~~~  194 (293)
T d1p22a2         142 NVVDFD--D--KYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYR-----------------------DRLVVSG  194 (293)
T ss_dssp             EEEEEE--T--TEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEE-----------------------TTEEEEE
T ss_pred             CCCEEC--C--CCCCCCCCCCCEEEECCCCCCEEEEECCCCCCCCCCCCC-----------------------CCEEEEE
T ss_conf             110000--0--220110699860410078883889971554453221689-----------------------8758876


Q ss_pred             ECCCEEEEEECCCCCEEEEEECCCCCCCCCEEEECCCCCEEEEEECCCCEEEEEECC
Q ss_conf             079829999878851379970599999968089869998999997899679998038
Q 001415          593 GDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSD  649 (1082)
Q Consensus       593 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~iwd~~~  649 (1082)
                      +.|+.|++||+.+...+.....+..  .+  ..+++++.+|++++.||.|++|++..
T Consensus       195 ~~dg~i~i~d~~~~~~~~~~~~~~~--~v--~~~~~~~~~l~sg~~dg~i~iwd~~~  247 (293)
T d1p22a2         195 SSDNTIRLWDIECGACLRVLEGHEE--LV--RCIRFDNKRIVSGAYDGKIKVWDLVA  247 (293)
T ss_dssp             ETTSCEEEEETTTCCEEEEECCCSS--CE--EEEECCSSEEEEEETTSCEEEEEHHH
T ss_pred             CCCCEEEEEECCCCEEEEEECCCCE--EE--EECCCCCEEEEEECCCCEEEEEECCC
T ss_conf             5899899986655614665214310--00--00145410799986799799998888

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.98  E-value=8.6e-29  Score=207.68  Aligned_cols=60  Identities=30%  Similarity=0.526  Sum_probs=45.0

Q ss_pred             CCCEEEEEECCCCEEEEECCC-CEEEEEECCCCCCEEEEEEECCCCEEEEEECCCCEEEEEC
Q ss_conf             995799974799589996203-3121352235557899999579998999928994999995
Q 001415          839 DNNIIAIGMDDSSIQIYNVRV-DEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSS  899 (1082)
Q Consensus       839 ~~~~lasg~~dg~I~iwd~~~-~~~~~~l~~h~~~V~~i~~s~d~~~l~s~s~Dg~I~iwd~  899 (1082)
                      ++.++++|+.|+.|++|++.. .+.+..+.+|.+.|++++|+|++ .|++++.|++|++|++
T Consensus       226 ~~~~l~sgs~D~~i~iw~~~~~~~~~~~~~~h~~~V~~v~~~~~~-~l~s~g~D~~v~iW~i  286 (287)
T d1pgua2         226 EEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPS-TLVSSGADACIKRWNV  286 (287)
T ss_dssp             SCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEETT-EEEEEETTSCEEEEEE
T ss_pred             CCCEEEEECCCCEEEEEECCCCCEEEEEECCCCCCEEEEEECCCC-EEEEEECCCEEEEEEE
T ss_conf             887027664999599988899975899927878985899998999-8999979992999997

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=1.7e-27  Score=198.75  Aligned_cols=91  Identities=18%  Similarity=0.337  Sum_probs=43.3

Q ss_pred             CCEEEEEECCCCEEEEEECCCCCCEEEEEEECCCCCEEEEEECCCCEEEEECCCCEEEEEECCCCCCEEEEEEECCCCEE
Q ss_conf             99089986689805789779999805999905999579997479958999620331213522355578999995799989
Q 001415          806 GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVL  885 (1082)
Q Consensus       806 dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~sp~~~~~lasg~~dg~I~iwd~~~~~~~~~l~~h~~~V~~i~~s~d~~~l  885 (1082)
                      |+.+++|+..+++.+..+.++...+..+.+++   ..+++++.||.|++||+.+.+.+....+|...+..  +++++.+|
T Consensus       157 d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~---~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~--~~~~~~~l  231 (293)
T d1p22a2         157 DRTIKVWNTSTCEFVRTLNGHKRGIACLQYRD---RLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRC--IRFDNKRI  231 (293)
T ss_dssp             TSEEEEEETTTCCEEEEEECCSSCEEEEEEET---TEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEE--EECCSSEE
T ss_pred             CCCEEEECCCCCCEEEEECCCCCCCCCCCCCC---CEEEEECCCCEEEEEECCCCEEEEEECCCCEEEEE--CCCCCEEE
T ss_conf             98604100788838899715544532216898---75887658998999866556146652143100000--14541079


Q ss_pred             EEEECCCCEEEEECCC
Q ss_conf             9992899499999578
Q 001415          886 VSSGADSQLCVWSSDG  901 (1082)
Q Consensus       886 ~s~s~Dg~I~iwd~~~  901 (1082)
                      ++++.||.|++|++..
T Consensus       232 ~sg~~dg~i~iwd~~~  247 (293)
T d1p22a2         232 VSGAYDGKIKVWDLVA  247 (293)
T ss_dssp             EEEETTSCEEEEEHHH
T ss_pred             EEECCCCEEEEEECCC
T ss_conf             9986799799998888

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.97  E-value=5.6e-28  Score=202.12  Aligned_cols=193  Identities=12%  Similarity=0.116  Sum_probs=129.0

Q ss_pred             CCCCCCEEEEECCCCEEEEEE--CCEEEEEECCCCEEEEEECC-----CCCCEEEEEEECCCCCEEEEEE-CCCCEEEEE
Q ss_conf             998801899604998389940--99089986689805789779-----9998059999059995799974-799589996
Q 001415          785 PEEAVPCFALSKNDSYVMSAS--GGKISLFNMMTFKTMATFMP-----PPPAATFLAFHPQDNNIIAIGM-DDSSIQIYN  856 (1082)
Q Consensus       785 ~~~~i~~i~~s~dg~~l~~~s--dg~i~iwd~~~~~~~~~~~~-----~~~~v~~i~~sp~~~~~lasg~-~dg~I~iwd  856 (1082)
                      +...+..++|+|||+++++++  ++.+.+++..+.+....+..     +........+.. .+...++.. .++.|.+|.
T Consensus       205 ~g~~~~~~~~spdg~~~~va~~~~~~v~v~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~g~~~~~~~lg~~~v~~~~  283 (432)
T d1qksa2         205 AERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPT-FGPVWATSHMGDDSVALIG  283 (432)
T ss_dssp             CCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEEEETT-TEEEEEEEBSSSSEEEEEE
T ss_pred             CCCCCCCCEECCCCCEEEEECCCCCEEEEEECCCCEEEEEECCCCCCCCCCCCCCEECCC-CCCEECCCCCCCCEEEECC
T ss_conf             367542653889887999951666367776144526888721486224567664101489-8831021356883587624


Q ss_pred             CCCCEEEEEECCCCCCEEEEEEECCCCEEEEEECCCCEEEEECCCCCCCCCEEEECCCCCCCCCCCCCEEEECCCCCEEE
Q ss_conf             20331213522355578999995799989999289949999957863112302103689989889993899817884999
Q 001415          857 VRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFL  936 (1082)
Q Consensus       857 ~~~~~~~~~l~~h~~~V~~i~~s~d~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~i~fspdg~~l~  936 (1082)
                      ....    .+..|...+....+++++..+++++.+.+.++|........           .   .....+++ ||++.++
T Consensus       284 ~~~~----~~~~~~~~v~~~~~~~~g~~~~~~s~p~~~~lw~~~~~~~~-----------~---~~~~sv~v-pDg~~la  344 (432)
T d1qksa2         284 TDPE----GHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPE-----------A---EISGSVAV-FDIKAMT  344 (432)
T ss_dssp             CCTT----TCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSS-----------H---HHHTCEEE-EEGGGCC
T ss_pred             CCCC----CCCCCCCEEEEEEECCCCCEEEEEECCCCCCEEECCCCCCC-----------C---CEEEEEEE-EECHHHC
T ss_conf             5665----55465657779988689976888726886410211267888-----------7---70359999-9624610


Q ss_pred             E-EECCEEEEEECCCCCEEEEECCCCCCCCEEEEEECCCCCEEEEEE-----CCCCEEEEECCCCEEEEEEC
Q ss_conf             9-936829999726762100000279996544899868996699964-----68819998469960346527
Q 001415          937 V-VHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACF-----LDATVCVFSAANLKLRCRIN 1002 (1082)
Q Consensus       937 ~-~~d~~i~iwd~~~~~~~~~~~~~~h~~~i~~i~~s~dg~~l~t~s-----~dg~i~iwd~~~~~~~~~~~ 1002 (1082)
                      + +.|+.+++|++.++..+.     .|...+.+++|||||++++.+.     .+|.|.|||..++++...+.
T Consensus       345 ~~s~d~~~k~w~~~~~~~l~-----~~~~~v~~~~fS~DG~~v~~S~~~~~~~~g~i~i~D~~T~k~~~~i~  411 (432)
T d1qksa2         345 GDGSDPEFKTLPIAEWAGIT-----EGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDDKTLELKHVIK  411 (432)
T ss_dssp             CSSSCCCEEEECHHHHHTCC-----SSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEETTTTEEEEEEC
T ss_pred             CCCCCCCEEECCCCCCCCCC-----CCCCCEEEEEECCCCCEEEEEEECCCCCCCCEEEEECCCCEEEEEEC
T ss_conf             45567844863343444457-----89986897679899999999970488888868999999955886846

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=1.4e-28  Score=206.24  Aligned_cols=127  Identities=11%  Similarity=-0.001  Sum_probs=94.0

Q ss_pred             EECCCCCCCEEEEEECCCCEEEEEECCCCCEEEEECCCCCEEEEECEEEECCCCCCCCCCCCCCCCCCCCEEEEEEECC-
Q ss_conf             6047899932889805898299998079919999725641356511165215778832110113698975559999029-
Q 001415          353 RTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPD-  431 (1082)
Q Consensus       353 ~~~~h~~~v~~~~fspdg~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~i~~spd-  431 (1082)
                      ..-+|++.|++++|||+++ +||+|+.||+|+|||+.++.......                ...+|.++|.+++|+|+ 
T Consensus         6 ~~~~h~d~I~~l~fsp~~~-~L~s~s~Dg~v~iwd~~~~~~~~~~~----------------~~~~h~~~V~~v~f~~~~   68 (342)
T d1yfqa_           6 IEQAPKDYISDIKIIPSKS-LLLITSWDGSLTVYKFDIQAKNVDLL----------------QSLRYKHPLLCCNFIDNT   68 (342)
T ss_dssp             CSSCCSSCEEEEEEEGGGT-EEEEEETTSEEEEEEEETTTTEEEEE----------------EEEECSSCEEEEEEEESS
T ss_pred             CCCCCCCCEEEEEEECCCC-EEEEEECCCEEEEEECCCCCCCEEEE----------------EECCCCCCEEEEEEECCC
T ss_conf             6889989788899958999-99999799929999756998636898----------------855899988999995899


Q ss_pred             CCEEEEEECCCEEEEEECCCCCEEEEEEEEECCCC-CEEEEEECCCCCCEEEEEEECCCCEEEEECCCCCE
Q ss_conf             98699996898199999447931347798615666-74499961799906999971799699998448954
Q 001415          432 GSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVG-GVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAK  501 (1082)
Q Consensus       432 g~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~-~V~~i~fs~dg~~~~l~s~s~d~~i~iWd~~~~~~  501 (1082)
                      +.+|++|+.|+.|++|++.......   ....+.. ......+.+++.  .+++++.++++++||++.+..
T Consensus        69 ~~~l~sg~~d~~v~~w~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~wd~~~~~~  134 (342)
T d1yfqa_          69 DLQIYVGTVQGEILKVDLIGSPSFQ---ALTNNEANLGICRICKYGDD--KLIAASWDGLIEVIDPRNYGD  134 (342)
T ss_dssp             SEEEEEEETTSCEEEECSSSSSSEE---ECBSCCCCSCEEEEEEETTT--EEEEEETTSEEEEECHHHHTT
T ss_pred             CCEEEECCCCCCEEEEECCCCCCCC---CCCCCCCCCCCCCCCCCCCC--CCCCCCCCCCCCEEECCCCCC
T ss_conf             9789981265311454204432000---00111111111111111111--111101222111020234443

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=8e-28  Score=201.05  Aligned_cols=152  Identities=11%  Similarity=0.156  Sum_probs=90.8

Q ss_pred             EEEEEECC-CEEEEEECCCCCEEEEEECCCCCCCCCEEEECCCCCEEEEEECCCCEEEEEECCCCCCEEECCCCCCCCCC
Q ss_conf             79997079-82999987885137997059999996808986999899999789967999803894110101244332233
Q 001415          588 RFLAAGDD-FSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASR  666 (1082)
Q Consensus       588 ~l~~~~~d-g~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~  666 (1082)
                      .+++++.+ +.+++|++...+....+... +...+.+++|+|++.+|++++.+|.|++|+..++......+         
T Consensus       132 ~~~v~~~~~~~v~~~~~~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~---------  201 (287)
T d1pgua2         132 YVAVGLEEGNTIQVFKLSDLEVSFDLKTP-LRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRW---------  201 (287)
T ss_dssp             EEEEEETTTSCEEEEETTEEEEEEECSSC-CSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCS---------
T ss_pred             CEEEECCCCCEEEEEECCCCCEEEEEEEC-CCCCEEEEEECCCCCCCCCCCCCCCCCCEEECCCCCCCCCC---------
T ss_conf             11100022100021000122100012102-47853699951676521101111110000002332110001---------


Q ss_pred             CCCCCCCCCCCCCCCCCCEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEECCCCCEEEEE
Q ss_conf             33356799821147888601211699322898203578774222234676446640379991697514431267759996
Q 001415          667 TSENSKNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLW  746 (1082)
Q Consensus       667 ~~~~~~~~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~dg~i~iw  746 (1082)
                                                                       ..|...|.+++|+|.+...            
T Consensus       202 -------------------------------------------------~~h~~~v~~~~~~p~~~~~------------  220 (287)
T d1pgua2         202 -------------------------------------------------AFRTSKINAISWKPAEKGA------------  220 (287)
T ss_dssp             -------------------------------------------------CCCSSCEEEEEECCCC---------------
T ss_pred             -------------------------------------------------CCCCCCCCEEEECCCCCCC------------
T ss_conf             -------------------------------------------------1111111000001365410------------


Q ss_pred             ECCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCEEEEECCCCEEEEEE-CCEEEEEECCC-CEEEEEEC
Q ss_conf             30332247998765555862018998620103468999998801899604998389940-99089986689-80578977
Q 001415          747 KWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMT-FKTMATFM  824 (1082)
Q Consensus       747 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~dg~~l~~~s-dg~i~iwd~~~-~~~~~~~~  824 (1082)
                                                                   ..+..++.++++++ |+.|++|++.+ .+....+.
T Consensus       221 ---------------------------------------------~~~~~~~~~l~sgs~D~~i~iw~~~~~~~~~~~~~  255 (287)
T d1pgua2         221 ---------------------------------------------NEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALN  255 (287)
T ss_dssp             ------------------------------------------------CCSCCEEEEEETTSCEEEEESSCTTCCEEETT
T ss_pred             ---------------------------------------------CCCCCCCCEEEEECCCCEEEEEECCCCCEEEEEEC
T ss_conf             ---------------------------------------------01267887027664999599988899975899927


Q ss_pred             CCCCCEEEEEEECCCCCEEEEEECCCCEEEEEC
Q ss_conf             999980599990599957999747995899962
Q 001415          825 PPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNV  857 (1082)
Q Consensus       825 ~~~~~v~~i~~sp~~~~~lasg~~dg~I~iwd~  857 (1082)
                      +|...|++++|+| ++ .+++++.|+.|++|++
T Consensus       256 ~h~~~V~~v~~~~-~~-~l~s~g~D~~v~iW~i  286 (287)
T d1pgua2         256 AHKDGVNNLLWET-PS-TLVSSGADACIKRWNV  286 (287)
T ss_dssp             SSTTCEEEEEEEE-TT-EEEEEETTSCEEEEEE
T ss_pred             CCCCCEEEEEECC-CC-EEEEEECCCEEEEEEE
T ss_conf             8789858999989-99-8999979992999997

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.97  E-value=1.2e-26  Score=193.12  Aligned_cols=349  Identities=11%  Similarity=0.068  Sum_probs=182.5

Q ss_pred             EECCCC--EEEEEECCCEEEEEECCCCCEEEEEEEEECCCCCEEEEEECCCCCCEEEEEEECCCCEEEEECCCCCEEEEE
Q ss_conf             902998--699996898199999447931347798615666744999617999069999717996999984489546994
Q 001415          428 WSPDGS--LFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIF  505 (1082)
Q Consensus       428 ~spdg~--~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~V~~i~fs~dg~~~~l~s~s~d~~i~iWd~~~~~~~~~~  505 (1082)
                      ++.|.+  ++++...||.|++||+.+++.+.   ++..|. .+..++|||||+  ++++++.|+++++||+.+++.....
T Consensus        26 ~~~d~~~~~~V~~~~dg~v~vwD~~t~~~~~---~l~~g~-~~~~vafSPDGk--~l~~~~~d~~v~vwd~~t~~~~~~~   99 (426)
T d1hzua2          26 NDLDLPNLFSVTLRDAGQIALVDGDSKKIVK---VIDTGY-AVHISRMSASGR--YLLVIGRDARIDMIDLWAKEPTKVA   99 (426)
T ss_dssp             SCCCGGGEEEEEETTTTEEEEEETTTCSEEE---EEECCS-SEEEEEECTTSC--EEEEEETTSEEEEEETTSSSCEEEE
T ss_pred             CCCCCCEEEEEEECCCCEEEEEECCCCCEEE---EEECCC-CEEEEEECCCCC--EEEEEECCCCEEEEECCCCCEEEEE
T ss_conf             1679870899997599979999999995999---996899-803899989999--9999958998899975688604899


Q ss_pred             E--CCCCCEEEEEEEECCCCEEEEEECCCCCEEEEECCCCCCEEEECCCCCCEEEEEECCCCCEEEECCCCCCEEEEEEC
Q ss_conf             0--68867489831104894399996489918999468899313423899715787986699736623114630699941
Q 001415          506 E--GHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFD  583 (1082)
Q Consensus       506 ~--~h~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~i~~~~~~  583 (1082)
                      .  ...+ ...                                        .+.++.|+|||+                 
T Consensus       100 ~i~~~~~-~~~----------------------------------------~~~s~~~spDG~-----------------  121 (426)
T d1hzua2         100 EIKIGIE-ARS----------------------------------------VESSKFKGYEDR-----------------  121 (426)
T ss_dssp             EEECCSE-EEE----------------------------------------EEECCSTTCTTT-----------------
T ss_pred             EEECCCC-CCC----------------------------------------EEEEEEECCCCC-----------------
T ss_conf             9867888-764----------------------------------------588500268898-----------------


Q ss_pred             CCCCEEE-EEECCCEEEEEECCCCCEEEEEECCCCCCCCCEEEECCCCCEE-EEEECCCCEEEEEECCCCCCEEECCCCC
Q ss_conf             8999799-9707982999987885137997059999996808986999899-9997899679998038941101012443
Q 001415          584 TTKNRFL-AAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLL-AVSTNDNGIKILATSDGIRLLRTFENLA  661 (1082)
Q Consensus       584 ~~~~~l~-~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~  661 (1082)
                          +++ ++..++.+.+||..++.+......+..  .+....+.+++... +..+.++...++.....           
T Consensus       122 ----~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~~-----------  184 (426)
T d1hzua2         122 ----YTIAGAYWPPQFAIMDGETLEPKQIVSTRGM--TVDTQTYHPEPRVAAIIASHEHPEFIVNVKET-----------  184 (426)
T ss_dssp             ----EEEEEEEESSEEEEEETTTCCEEEEEECCEE--CSSSCCEESCCCEEEEEECSSSSEEEEEETTT-----------
T ss_pred             ----EEEEEECCCCEEEEECCCCCCEEEEEECCCC--CCCCEEECCCCCEEEEEECCCCCEEEEECCCC-----------
T ss_conf             ----7999635897699985776412578622677--73643642788503899878787888852789-----------


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEECCCCC
Q ss_conf             32233333567998211478886012116993228982035787742222346764466403799916975144312677
Q 001415          662 YDASRTSENSKNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNA  741 (1082)
Q Consensus       662 ~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~dg  741 (1082)
                                                    +.+.+++...                             ...+..     
T Consensus       185 ------------------------------~~i~~~~~~~-----------------------------~~~~~~-----  200 (426)
T d1hzua2         185 ------------------------------GKVLLVNYKD-----------------------------IDNLTV-----  200 (426)
T ss_dssp             ------------------------------TEEEEEECSS-----------------------------SSSCEE-----
T ss_pred             ------------------------------CEEEEEEECC-----------------------------CCCEEE-----
T ss_conf             ------------------------------7699999246-----------------------------652045-----


Q ss_pred             EEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCEEEEECCCCEEEEEE--CCEEEEEECCCCEE
Q ss_conf             5999630332247998765555862018998620103468999998801899604998389940--99089986689805
Q 001415          742 IHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS--GGKISLFNMMTFKT  819 (1082)
Q Consensus       742 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~dg~~l~~~s--dg~i~iwd~~~~~~  819 (1082)
                          ..                                   ..+...+..+.++|+++++.++.  +..+.+++..+++.
T Consensus       201 ----~~-----------------------------------~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~  241 (426)
T d1hzua2         201 ----TS-----------------------------------IGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRL  241 (426)
T ss_dssp             ----EE-----------------------------------EECCSSEEEEEECTTSCEEEEEETTCSEEEEEETTTTEE
T ss_pred             ----EE-----------------------------------ECCCCCCEEEEECCCCCEEEEEEECCCCEEEEECCCCCE
T ss_conf             ----77-----------------------------------566775376137788867886420110000000255627


Q ss_pred             EEEECCC--CCCEEEEEEECCCCCEE--EEEECCCCEEEEECCC-------CEEEEEECCCCCCEEEEEEECCCCEEEE-
Q ss_conf             7897799--99805999905999579--9974799589996203-------3121352235557899999579998999-
Q 001415          820 MATFMPP--PPAATFLAFHPQDNNII--AIGMDDSSIQIYNVRV-------DEVKSKLKGHSKRITGLAFSHALNVLVS-  887 (1082)
Q Consensus       820 ~~~~~~~--~~~v~~i~~sp~~~~~l--asg~~dg~I~iwd~~~-------~~~~~~l~~h~~~V~~i~~s~d~~~l~s-  887 (1082)
                      .......  ........+.......+  +....|+.+.+|+...       ++....+.+|...+..++|+||+++|++ 
T Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~~~~~~~~~~~~~~~~~~~~l~g~~~~v~~v~~sPdg~~l~v~  321 (426)
T d1hzua2         242 SALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVD  321 (426)
T ss_dssp             EEEEECSSCCCCSCCEEEEETTTEEEEEEECTTTCEEEEEECCTTTCTTTBTSEEEEEECSSSCCCCEECCTTCSEEEEC
T ss_pred             EEEECCCCCCCCCCEEEEECCCCCCEEEECCCCCCEEEEEECCCCCCCCCCCEEEEEEECCCCCEEEEECCCCCCEEEEE
T ss_conf             88750587444342011006987745774157896598852256652033025868986688763678748998618885


Q ss_pred             ------EECCCCEEEEECCCCCCCCCEEEECCCCCCCCCCCCCEEEECCCCCEEEEEECCEEEEEECCCCCEEEEECCCC
Q ss_conf             ------92899499999578631123021036899898899938998178849999936829999726762100000279
Q 001415          888 ------SGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPRE  961 (1082)
Q Consensus       888 ------~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~i~fspdg~~l~~~~d~~i~iwd~~~~~~~~~~~~~~  961 (1082)
                            ++.|++|++||+.+++...... ..                                      ++ .  .....
T Consensus       322 ~~~~~s~~~~~tv~vwd~~t~~~~~~~~-~~--------------------------------------~~-~--~~~~~  359 (426)
T d1hzua2         322 TTFNPDARISQSVAVFDLKNLDAKYQVL-PI--------------------------------------AE-W--ADLGE  359 (426)
T ss_dssp             CTTCSSHHHHTCEEEEETTCTTSCCEEE-CH--------------------------------------HH-H--HCCCS
T ss_pred             ECCCCCCCCCCEEEEEECCCCCCCEEEE-CC--------------------------------------CH-H--CCCCC
T ss_conf             0679880228879999898787670895-02--------------------------------------11-0--25677


Q ss_pred             CCCCEEEEEECCCCCEEEEE-----ECCCCEEEEECCCCEEEEEEC
Q ss_conf             99654489986899669996-----468819998469960346527
Q 001415          962 SSAPITHATFSCDSQLVYAC-----FLDATVCVFSAANLKLRCRIN 1002 (1082)
Q Consensus       962 h~~~i~~i~~s~dg~~l~t~-----s~dg~i~iwd~~~~~~~~~~~ 1002 (1082)
                      |...+.+++|||||++++.+     +.+|.|+|||..++++...+.
T Consensus       360 ~~~rv~~~~fSpDGk~i~vs~~~~~~~~~~i~v~D~~T~k~~~~i~  405 (426)
T d1hzua2         360 GAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLKLKAVVK  405 (426)
T ss_dssp             SCCCEEEEEECSSSSEEEEEECCCTTSCCEEEEEETTTTEEEEEEC
T ss_pred             CCCCEEEEEECCCCCEEEEEEECCCCCCCEEEEEECCCCEEEEEEC
T ss_conf             8851898799999999999972488889829999999873899987

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.97  E-value=7.9e-29  Score=207.93  Aligned_cols=322  Identities=11%  Similarity=0.075  Sum_probs=170.3

Q ss_pred             EEEEEEC-CCCEEEEEECCCEEEEEECCCCCEEEEEEEEECCCCCEEEEEECCCCCCEEEEEEECC--CCEEEEECCCCC
Q ss_conf             5999902-9986999968981999994479313477986156667449996179990699997179--969999844895
Q 001415          424 NRVIWSP-DGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDD--KTIKVWDATNGA  500 (1082)
Q Consensus       424 ~~i~~sp-dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~V~~i~fs~dg~~~~l~s~s~d--~~i~iWd~~~~~  500 (1082)
                      ..-.||| ||+++|+++ ++.|++|+..++...+    + +|...|.+++|+|||+  .|++++.+  ..|++||..+++
T Consensus         6 ~~~~fSP~dG~~~a~~~-~g~v~v~d~~~~~~~~----~-~~~~~v~~~~~spDg~--~l~~~~~~~g~~v~v~d~~~~~   77 (360)
T d1k32a3           6 FAEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVLK----V-PEPLRIRYVRRGGDTK--VAFIHGTREGDFLGIYDYRTGK   77 (360)
T ss_dssp             GEEEEEECGGGCEEEEE-TTEEEEECTTSSBEEE----C-SCCSCEEEEEECSSSE--EEEEEEETTEEEEEEEETTTCC
T ss_pred             HCCCCCCCCCCEEEEEE-CCEEEEEECCCCCEEE----C-CCCCCEEEEEECCCCC--EEEEEECCCCCEEEEEECCCCC
T ss_conf             00514688999999998-9969999899994899----1-6999888899989999--9999992899899999899994


Q ss_pred             EEEEEECCCCCEEEEEEEECCCCEEEEEECCCCCEEEEECCCCCCEEEECCCCCCEEEEEECCCCCEEEECCCCCCEEEE
Q ss_conf             46994068867489831104894399996489918999468899313423899715787986699736623114630699
Q 001415          501 KQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVV  580 (1082)
Q Consensus       501 ~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~i~~~  580 (1082)
                      .. .+..|...+.+++|+|+.  +++++++.++.+                                             
T Consensus        78 ~~-~~~~~~~~v~~~~~spdg--~~l~~~~~~~~~---------------------------------------------  109 (360)
T d1k32a3          78 AE-KFEENLGNVFAMGVDRNG--KFAVVANDRFEI---------------------------------------------  109 (360)
T ss_dssp             EE-ECCCCCCSEEEEEECTTS--SEEEEEETTSEE---------------------------------------------
T ss_pred             EE-EEECCCCEEEEEEECCCC--CCCCEECCCCCC---------------------------------------------
T ss_conf             88-750897127741211454--321000111110---------------------------------------------


Q ss_pred             EECCCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCCCCCEEEECCCCCEEEEEECC----------CCEEEEEECCC
Q ss_conf             94189997999707982999987885137997059999996808986999899999789----------96799980389
Q 001415          581 QFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTND----------NGIKILATSDG  650 (1082)
Q Consensus       581 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~d----------g~i~iwd~~~~  650 (1082)
                                        ++|+..+++....+..+..  .+.+++|+|+|++|+.+..+          +.+++|+..++
T Consensus       110 ------------------~~~~~~~~~~~~~~~~~~~--~~~~~~~spdg~~la~~~~~~~~~~~~~~~~~~~v~d~~~~  169 (360)
T d1k32a3         110 ------------------MTVDLETGKPTVIERSREA--MITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGR  169 (360)
T ss_dssp             ------------------EEEETTTCCEEEEEECSSS--CCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTT
T ss_pred             ------------------CCCCCCCCCEEEEEECCCC--CCCCHHHCCCEEEEEEECCCCCCCEEECCCCCEEEECCCCC
T ss_conf             ------------------0000122210000001355--20230121322566521233121100025654266304557


Q ss_pred             CCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEEECCC
Q ss_conf             41101012443322333335679982114788860121169932289820357877422223467644664037999169
Q 001415          651 IRLLRTFENLAYDASRTSENSKNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNS  730 (1082)
Q Consensus       651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~  730 (1082)
                      . .....                                                           .+...+..+.|+|+
T Consensus       170 ~-~~~~~-----------------------------------------------------------~~~~~~~~~~~spd  189 (360)
T d1k32a3         170 K-IFAAT-----------------------------------------------------------TENSHDYAPAFDAD  189 (360)
T ss_dssp             E-EEECS-----------------------------------------------------------CSSSBEEEEEECTT
T ss_pred             C-EEEEC-----------------------------------------------------------CCCCCCCCCCCCCC
T ss_conf             1-35303-----------------------------------------------------------54322110012577


Q ss_pred             CCEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCEEEEECCCCEEEEEE-C---
Q ss_conf             751443126775999630332247998765555862018998620103468999998801899604998389940-9---
Q 001415          731 GNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-G---  806 (1082)
Q Consensus       731 ~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~dg~~l~~~s-d---  806 (1082)
                      |+.+++++.++.+.+|+........              ...........    +......+.+++++..++.+. +   
T Consensus       190 g~~l~~~s~~~~~~~~d~~~~~~~~--------------~~~~~~~~~~~----~~~~~~~~~~s~~~~~~~~~~~~~~~  251 (360)
T d1k32a3         190 SKNLYYLSYRSLDPSPDRVVLNFSF--------------EVVSKPFVIPL----IPGSPNPTKLVPRSMTSEAGEYDLND  251 (360)
T ss_dssp             SCEEEEEESCCCCCEECSSSSCEEC--------------CSCBEEEEEES----STTCCCGGGCCCGGGSCCCCCCCCTT
T ss_pred             CCEEEEEECCCCEECCCCCCCCEEE--------------CCCCCEEEEEC----CCCCCCCCEECCCCCCCCCCCEEECC
T ss_conf             9999999599855753335440232--------------03641179852----46960120687776715531136526


Q ss_pred             --CEEEEEECCCCEEEEEECCCCCCEEEEEEECC--CCCEEEEEECCCCEEEEECCCCEEEEEECCCCCCEEEEEEECCC
Q ss_conf             --90899866898057897799998059999059--99579997479958999620331213522355578999995799
Q 001415          807 --GKISLFNMMTFKTMATFMPPPPAATFLAFHPQ--DNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHAL  882 (1082)
Q Consensus       807 --g~i~iwd~~~~~~~~~~~~~~~~v~~i~~sp~--~~~~lasg~~dg~I~iwd~~~~~~~~~l~~h~~~V~~i~~s~d~  882 (1082)
                        ..+..++...+.. ..+..+...+..+.+...  ...+++.++.++.+++||+.+++.    ..|.+.|.+++|||||
T Consensus       252 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~----~~~~~~v~~~~~SpDG  326 (360)
T d1k32a3         252 MYKRSSPINVDPGDY-RMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKV----TEVKNNLTDLRLSADR  326 (360)
T ss_dssp             GGGGCEECSCCCBCE-EEEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCCE----EEEEEEEEEEEECTTS
T ss_pred             CCCCEEECCCCCCCE-EEEEECCCCCEEEEEEECCCCEEEEEECCCCCEEEEEECCCCEE----EEECCCCCEEEECCCC
T ss_conf             654001012476752-67541389856999973599706999648998799997999749----8864886879999989


Q ss_pred             CEEEEEECCCCEEEEECCCCCC
Q ss_conf             9899992899499999578631
Q 001415          883 NVLVSSGADSQLCVWSSDGWEK  904 (1082)
Q Consensus       883 ~~l~s~s~Dg~I~iwd~~~~~~  904 (1082)
                      ++|++++.||.|++|+++.++.
T Consensus       327 ~~l~~~~~Dg~i~v~d~~~~~~  348 (360)
T d1k32a3         327 KTVMVRKDDGKIYTFPLEKPED  348 (360)
T ss_dssp             CEEEEEETTSCEEEEESSCTTS
T ss_pred             CEEEEEECCCEEEEEECCCCCC
T ss_conf             8999997899499999999985

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.94  E-value=7.4e-23  Score=167.15  Aligned_cols=158  Identities=6%  Similarity=0.004  Sum_probs=96.0

Q ss_pred             CEEEEEECCCEEEEEECCCCCEEEEEEEEECCCCCEEEEEECCCCCCEEEEEEECCCCEEEEECCCCCEEEEEECCCCCE
Q ss_conf             86999968981999994479313477986156667449996179990699997179969999844895469940688674
Q 001415          433 SLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPV  512 (1082)
Q Consensus       433 ~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~V~~i~fs~dg~~~~l~s~s~d~~i~iWd~~~~~~~~~~~~h~~~v  512 (1082)
                      +|+++++.|+.|.+||+++++.+..+ ....+...+.+++|+|||+. ++++++.++.|.+||+.+++.+..+..+....
T Consensus         2 ~~~vt~~~d~~v~v~D~~s~~~~~~i-~~~~~~~~~~~i~~spDg~~-l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~~   79 (337)
T d1pbyb_           2 DYILAPARPDKLVVIDTEKMAVDKVI-TIADAGPTPMVPMVAPGGRI-AYATVNKSESLVKIDLVTGETLGRIDLSTPEE   79 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEEEEEE-ECTTCTTCCCCEEECTTSSE-EEEEETTTTEEEEEETTTCCEEEEEECCBTTE
T ss_pred             EEEEEECCCCEEEEEECCCCEEEEEE-ECCCCCCCCCEEEECCCCCE-EEEEECCCCEEEEEECCCCCEEEEEECCCCCC
T ss_conf             69999767998999999999499999-87788998237999999899-99997899949999999992988872477731


Q ss_pred             -----EEEEEEECCCCEEEEEECCCCCEEEEECCCCCCEEEECCCCCCEEEEEECCCCCEEEECCCCCCEEEEEECCCCC
Q ss_conf             -----898311048943999964899189994688993134238997157879866997366231146306999418999
Q 001415          513 -----YSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKN  587 (1082)
Q Consensus       513 -----~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~i~~~~~~~~~~  587 (1082)
                           ..+.|+  +++..++++..+.....                                                  
T Consensus        80 ~~~~~~~v~~s--~dg~~l~~~~~~~~~~~--------------------------------------------------  107 (337)
T d1pbyb_          80 RVKSLFGAALS--PDGKTLAIYESPVRLEL--------------------------------------------------  107 (337)
T ss_dssp             EEECTTCEEEC--TTSSEEEEEEEEEEECS--------------------------------------------------
T ss_pred             CCCCEEEEEEC--CCCCEEEEEECCCCCEE--------------------------------------------------
T ss_conf             25402548986--87757999504776203--------------------------------------------------


Q ss_pred             EEEEEECCCEEEEEECCCCCEEEEEECCCCCCCCCEEEECCCCCEEEEEECCCCEEEEEECCC
Q ss_conf             799970798299998788513799705999999680898699989999978996799980389
Q 001415          588 RFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG  650 (1082)
Q Consensus       588 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~iwd~~~~  650 (1082)
                       ......+..+.+||..+++....+.....   +..++|+++|+++++++.  .+.+|+..++
T Consensus       108 -~~~~~~~~~~~~~d~~~~~~~~~~~~~~~---~~~~~~s~dg~~l~~~~~--~~~~~d~~~~  164 (337)
T d1pbyb_         108 -THFEVQPTRVALYDAETLSRRKAFEAPRQ---ITMLAWARDGSKLYGLGR--DLHVMDPEAG  164 (337)
T ss_dssp             -SCEEECCCEEEEEETTTTEEEEEEECCSS---CCCEEECTTSSCEEEESS--SEEEEETTTT
T ss_pred             -EECCCCCCCEEECCCCCCEEEEECCCCCC---CEEEEECCCCCEEEEECC--CCCEEEEECC
T ss_conf             -42034555212035667759884145687---218998688888999717--7505663037

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.94  E-value=2.7e-23  Score=170.16  Aligned_cols=76  Identities=7%  Similarity=-0.019  Sum_probs=35.5

Q ss_pred             EEECCCCEEEEEECCCEEEEEECCCCCEEEEEEEEE-CCCCCEEEEEECCCCCCEEEEEEECCCCEEEEECCCCCEEEEE
Q ss_conf             990299869999689819999944793134779861-5666744999617999069999717996999984489546994
Q 001415          427 IWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEID-AHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIF  505 (1082)
Q Consensus       427 ~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~-~h~~~V~~i~fs~dg~~~~l~s~s~d~~i~iWd~~~~~~~~~~  505 (1082)
                      +|++++++|++++.++.|.+||+.+++.+.   ++. .|...+.+++|+|||+. +++++..++.|++||+.+++.+..+
T Consensus         3 a~~~~~~~l~~~~~~~~v~v~D~~t~~~~~---t~~~~~~~~p~~l~~spDG~~-l~v~~~~~~~v~~~d~~t~~~~~~~   78 (346)
T d1jmxb_           3 ALKAGHEYMIVTNYPNNLHVVDVASDTVYK---SCVMPDKFGPGTAMMAPDNRT-AYVLNNHYGDIYGIDLDTCKNTFHA   78 (346)
T ss_dssp             CCCTTCEEEEEEETTTEEEEEETTTTEEEE---EEECSSCCSSCEEEECTTSSE-EEEEETTTTEEEEEETTTTEEEEEE
T ss_pred             CCCCCCCEEEEECCCCEEEEEECCCCCEEE---EEECCCCCCCCEEEECCCCCE-EEEEECCCCCEEEEECCCCEEEEEE
T ss_conf             588999699998699979999999998999---999489997045999789899-9999789993999967567131231


Q ss_pred             E
Q ss_conf             0
Q 001415          506 E  506 (1082)
Q Consensus       506 ~  506 (1082)
                      .
T Consensus        79 ~   79 (346)
T d1jmxb_          79 N   79 (346)
T ss_dssp             E
T ss_pred             C
T ss_conf             0

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.94  E-value=6.7e-23  Score=167.47  Aligned_cols=92  Identities=13%  Similarity=0.119  Sum_probs=56.7

Q ss_pred             EEEEECCCCCEEEEECCCCCEEEEECEEEECCCCCCCCCCCCCCCCCCCCEEEEEEECCCCEEE-EEECCCEEEEEECCC
Q ss_conf             9999807991999972564135651116521577883211011369897555999902998699-996898199999447
Q 001415          373 LLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFG-VAYSRHIVQIYSYHG  451 (1082)
Q Consensus       373 llasgs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~i~~spdg~~la-s~~~d~~i~iwd~~~  451 (1082)
                      ++++++.|+.|.+||+.+++.+.+..                 ...+...+.+++|||||++++ +++.++.|.+||+.+
T Consensus         3 ~~vt~~~d~~v~v~D~~s~~~~~~i~-----------------~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t   65 (337)
T d1pbyb_           3 YILAPARPDKLVVIDTEKMAVDKVIT-----------------IADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVT   65 (337)
T ss_dssp             EEEEEETTTEEEEEETTTTEEEEEEE-----------------CTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTT
T ss_pred             EEEEECCCCEEEEEECCCCEEEEEEE-----------------CCCCCCCCCEEEECCCCCEEEEEECCCCEEEEEECCC
T ss_conf             99997679989999999994999998-----------------7788998237999999899999978999499999999


Q ss_pred             CCEEEEEEEEECC-----CCCEEEEEECCCCCCEEEEEEE
Q ss_conf             9313477986156-----6674499961799906999971
Q 001415          452 GDEVRQHLEIDAH-----VGGVNDIAFSHPNKQLCVITCG  486 (1082)
Q Consensus       452 ~~~~~~~~~~~~h-----~~~V~~i~fs~dg~~~~l~s~s  486 (1082)
                      ++.+.   .+..+     ...+..++|+|+++  +++.+.
T Consensus        66 ~~~~~---~~~~~~~~~~~~~~~~v~~s~dg~--~l~~~~  100 (337)
T d1pbyb_          66 GETLG---RIDLSTPEERVKSLFGAALSPDGK--TLAIYE  100 (337)
T ss_dssp             CCEEE---EEECCBTTEEEECTTCEEECTTSS--EEEEEE
T ss_pred             CCEEE---EEECCCCCCCCCCEEEEEECCCCC--EEEEEE
T ss_conf             92988---872477731254025489868775--799950

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.94  E-value=1.4e-20  Score=151.65  Aligned_cols=82  Identities=9%  Similarity=0.066  Sum_probs=57.0

Q ss_pred             CCEEEEE-ECCEEEEEECCCCEEEEEECCCCCCEEEEEEECCCCC--EEEEEECCCCEEEEECCCCEEEEEECCCCCCEE
Q ss_conf             9838994-0990899866898057897799998059999059995--799974799589996203312135223555789
Q 001415          798 DSYVMSA-SGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNN--IIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRIT  874 (1082)
Q Consensus       798 g~~l~~~-sdg~i~iwd~~~~~~~~~~~~~~~~v~~i~~sp~~~~--~lasg~~dg~I~iwd~~~~~~~~~l~~h~~~V~  874 (1082)
                      +..++.. .++.+.+||..+++.+..+. +...+..++|+| |++  ++++++.|+.|++||+.+++.+..+..+....+
T Consensus       288 ~~~~~~~~~~~~v~~~d~~t~~~~~~~~-~~~~~~~~a~sp-DG~~~l~vt~~~d~~v~v~D~~tg~~~~~~~~~g~~P~  365 (373)
T d2madh_         288 QSAWKLHAAAKEVTSVTGLVGQTSSQIS-LGHDVDAISVAQ-DGGPDLYALSAGTEVLHIYDAGAGDQDQSTVELGSGPQ  365 (373)
T ss_pred             CCEEEEECCCCEEEEEECCCCCEEEEEC-CCCCEEEEEECC-CCCEEEEEEECCCCEEEEEECCCCCEEEEECCCCCCCC
T ss_conf             8247862589869999899996989866-899825899998-99989999967999299999999989999888898981


Q ss_pred             EEEEECC
Q ss_conf             9999579
Q 001415          875 GLAFSHA  881 (1082)
Q Consensus       875 ~i~~s~d  881 (1082)
                      .+++.++
T Consensus       366 ~l~~~~~  372 (373)
T d2madh_         366 VLSVMNE  372 (373)
T ss_pred             EEEEECC
T ss_conf             8998468

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.93  E-value=5.1e-23  Score=168.26  Aligned_cols=101  Identities=11%  Similarity=0.004  Sum_probs=65.1

Q ss_pred             EEEECCCCEEEEEECCCCCEEEEECCCCCEEEEECEEEECCCCCCCCCCCCCCCCCCCCEEEEEEECCCCEEEE-EECCC
Q ss_conf             89805898299998079919999725641356511165215778832110113698975559999029986999-96898
Q 001415          364 MDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGV-AYSRH  442 (1082)
Q Consensus       364 ~~fspdg~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~i~~spdg~~las-~~~d~  442 (1082)
                      ++|++++++ +++++.++.|.+||+.+++.+.+.                  ...+...+.+++|+|||+++++ +..++
T Consensus         2 ~a~~~~~~~-l~~~~~~~~v~v~D~~t~~~~~t~------------------~~~~~~~p~~l~~spDG~~l~v~~~~~~   62 (346)
T d1jmxb_           2 PALKAGHEY-MIVTNYPNNLHVVDVASDTVYKSC------------------VMPDKFGPGTAMMAPDNRTAYVLNNHYG   62 (346)
T ss_dssp             CCCCTTCEE-EEEEETTTEEEEEETTTTEEEEEE------------------ECSSCCSSCEEEECTTSSEEEEEETTTT
T ss_pred             CCCCCCCCE-EEEECCCCEEEEEECCCCCEEEEE------------------ECCCCCCCCEEEECCCCCEEEEEECCCC
T ss_conf             558899969-999869997999999999899999------------------9489997045999789899999978999


Q ss_pred             EEEEEECCCCCEEEEEEEEE---CCCCCEEEEEECCCCCCEEEEEE
Q ss_conf             19999944793134779861---56667449996179990699997
Q 001415          443 IVQIYSYHGGDEVRQHLEID---AHVGGVNDIAFSHPNKQLCVITC  485 (1082)
Q Consensus       443 ~i~iwd~~~~~~~~~~~~~~---~h~~~V~~i~fs~dg~~~~l~s~  485 (1082)
                      .|.+||+.+++.+.......   .+...+..++|+|||+.  ++.+
T Consensus        63 ~v~~~d~~t~~~~~~~~~~~~~~~~~~~~~~v~~s~DG~~--l~v~  106 (346)
T d1jmxb_          63 DIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKE--VYAT  106 (346)
T ss_dssp             EEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSE--EEEE
T ss_pred             CEEEEECCCCEEEEEECCCCCCCCCCCCEEEEEEECCCCE--EEEE
T ss_conf             3999967567131231036543454774179999058888--9997

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.93  E-value=2.9e-21  Score=156.26  Aligned_cols=78  Identities=21%  Similarity=0.165  Sum_probs=27.8

Q ss_pred             EEEEEEECCCCEEE-EEECCCEEEEEECCCCCEEEEEEEEECCCCCEEEEEECCCCCCEEEEEEECCCCEEEEECCCCCE
Q ss_conf             55999902998699-99689819999944793134779861566674499961799906999971799699998448954
Q 001415          423 VNRVIWSPDGSLFG-VAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAK  501 (1082)
Q Consensus       423 V~~i~~spdg~~la-s~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~V~~i~fs~dg~~~~l~s~s~d~~i~iWd~~~~~~  501 (1082)
                      +..++|||||++|+ +++.++.|++||+.+++.+.   ++..+. .+..++|++++.. +++++..++.+.+|+..+++.
T Consensus        34 p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~---~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~  108 (301)
T d1l0qa2          34 PMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIA---TVPAGS-SPQGVAVSPDGKQ-VYVTNMASSTLSVIDTTSNTV  108 (301)
T ss_dssp             EEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEE---EEECSS-SEEEEEECTTSSE-EEEEETTTTEEEEEETTTTEE
T ss_pred             CEEEEEECCCCEEEEEECCCCEEEEEECCCCCEEE---EEECCC-CCCCCCCCCCCCC-CCCCCCCCCEEEECCCCCCEE
T ss_conf             36999928989999997899989999999894103---200024-6431100011111-111111110011001243024


Q ss_pred             EEEE
Q ss_conf             6994
Q 001415          502 QYIF  505 (1082)
Q Consensus       502 ~~~~  505 (1082)
                      ...+
T Consensus       109 ~~~~  112 (301)
T d1l0qa2         109 AGTV  112 (301)
T ss_dssp             EEEE
T ss_pred             EEEC
T ss_conf             3202

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.93  E-value=4e-21  Score=155.35  Aligned_cols=198  Identities=13%  Similarity=0.118  Sum_probs=104.9

Q ss_pred             CEEEEECCCCEEEEEE--CCEEEEEECCCCEEEEEECCCCCCEEEEEEECCCCCEE-EEEECCCCEEEEECCCCEEEEEE
Q ss_conf             1899604998389940--99089986689805789779999805999905999579-99747995899962033121352
Q 001415          790 PCFALSKNDSYVMSAS--GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNII-AIGMDDSSIQIYNVRVDEVKSKL  866 (1082)
Q Consensus       790 ~~i~~s~dg~~l~~~s--dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l-asg~~dg~I~iwd~~~~~~~~~l  866 (1082)
                      ..+++++++..+++..  ++.+.+|+..+++....+.. .....+++++| ++..+ +++..++.+.+|+..+......+
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-dg~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (301)
T d1l0qa2          77 QGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKT-GKSPLGLALSP-DGKKLYVTNNGDKTVSVINTVTKAVINTV  154 (301)
T ss_dssp             EEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC-SSSEEEEEECT-TSSEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred             CCCCCCCCCCCCCCCCCCCCEEEECCCCCCEEEEECCC-CCCCEEEEEEC-CCCEEEEEECCCCCEEEEECCCCCEEEEC
T ss_conf             31100011111111111110011001243024320244-44423787605-89715542011110011000146303531


Q ss_pred             CCCCCCEEEEEEECCCCEEEEEECC-CCEEEEECCCCCCCCCEEEECCCCCCCCCCCCCEEEECCCCCEEEE-EEC---C
Q ss_conf             2355578999995799989999289-9499999578631123021036899898899938998178849999-936---8
Q 001415          867 KGHSKRITGLAFSHALNVLVSSGAD-SQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHE---T  941 (1082)
Q Consensus       867 ~~h~~~V~~i~~s~d~~~l~s~s~D-g~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~i~fspdg~~l~~-~~d---~  941 (1082)
                      ..+ ..+..+++++++..+++++.+ +.+.+|+.......     ......    ..+..++|++++..+++ ..+   +
T Consensus       155 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~----~~~~~~~~~~~g~~~~v~~~~~~~~  224 (301)
T d1l0qa2         155 SVG-RSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVI-----DTVKVE----AAPSGIAVNPEGTKAYVTNVDKYFN  224 (301)
T ss_dssp             ECC-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEE-----EEEECS----SEEEEEEECTTSSEEEEEEECSSCC
T ss_pred             CCC-CCCEEEEEECCCCCEEEECCCCCCCCCCCCCCEEEE-----ECCCCC----CCCCEEECCCCCCCCCCCCCCCEEE
T ss_conf             567-884288860465401310121111111111100011-----101335----7750311011110111100210000


Q ss_pred             EEEEEECCCCCEEEEECCCCCCCCEEEEEECCCCCEE-EEEECCCCEEEEECCCCEEEEEEC
Q ss_conf             2999972676210000027999654489986899669-996468819998469960346527
Q 001415          942 QLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLV-YACFLDATVCVFSAANLKLRCRIN 1002 (1082)
Q Consensus       942 ~i~iwd~~~~~~~~~~~~~~h~~~i~~i~~s~dg~~l-~t~s~dg~i~iwd~~~~~~~~~~~ 1002 (1082)
                      .+.+||..+++.+..+..   ...+.+++|+|||++| ++++.|+.|++||+.+++++..+.
T Consensus       225 ~v~v~D~~t~~~~~~~~~---~~~~~~va~spdg~~l~va~~~~~~i~v~D~~t~~~~~~~~  283 (301)
T d1l0qa2         225 TVSMIDTGTNKITARIPV---GPDPAGIAVTPDGKKVYVALSFCNTVSVIDTATNTITATMA  283 (301)
T ss_dssp             EEEEEETTTTEEEEEEEC---CSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred             EEEEEECCCCEEEEEECC---CCCEEEEEEECCCCEEEEEECCCCEEEEEECCCCEEEEEEE
T ss_conf             232365699819999848---99877999918989999998999969999999995999996

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.89  E-value=4.6e-18  Score=134.41  Aligned_cols=39  Identities=8%  Similarity=-0.096  Sum_probs=16.2

Q ss_pred             CCCCCEEEEEECCCCEEEEEE----CCCCCEEEEECCCCCEEE
Q ss_conf             899932889805898299998----079919999725641356
Q 001415          357 QGSSPMSMDFHPVQQTLLLVG----TNVGDIGLWEVGSRERLV  395 (1082)
Q Consensus       357 h~~~v~~~~fspdg~~llasg----s~dg~i~iwd~~~~~~~~  395 (1082)
                      +..++..++++|||++++++.    +..+.|.+||..+++.+.
T Consensus        19 ~~~p~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~   61 (373)
T d2madh_          19 ADGPTNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSGSILG   61 (373)
T ss_pred             CCCCCCCCCCCCCCCEEEEECCCCCCCCCEEEEEECCCCCEEE
T ss_conf             7898656301899978999734225787659999899997999

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.89  E-value=3.3e-20  Score=149.04  Aligned_cols=331  Identities=11%  Similarity=0.052  Sum_probs=177.3

Q ss_pred             CCEEEEEECCCCEEEEEE----CCCCCEEEEECCCCCEEEEECEEEECCCCCCCCCCCCCCCCCCCCEEEEEEECCCCEE
Q ss_conf             932889805898299998----0799199997256413565111652157788321101136989755599990299869
Q 001415          360 SPMSMDFHPVQQTLLLVG----TNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLF  435 (1082)
Q Consensus       360 ~v~~~~fspdg~~llasg----s~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~i~~spdg~~l  435 (1082)
                      ++.-.+.+|||++++++.    ..++.|.+||..+++.+.+                   +..+  .+..++|||||++|
T Consensus         3 p~~~~a~spdg~~~~v~~~~~~~~~~~v~v~D~~tg~~~~~-------------------~~~g--~~~~~a~SpDg~~l   61 (355)
T d2bbkh_           3 PRILEAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGM-------------------IDGG--FLPNPVVADDGSFI   61 (355)
T ss_dssp             CCBCCCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEE-------------------EEEC--SSCEEEECTTSSCE
T ss_pred             CCEEEEECCCCCEEEEEECCCCCCCCEEEEEECCCCCEEEE-------------------EECC--CCCCEEECCCCCEE
T ss_conf             71747658999999998266477767199999999949999-------------------9899--99856994899999


Q ss_pred             EEEE----------CCCEEEEEECCCCCEEEEEEEEECC----CCCEEEEEECCCCCCEEEEEEECCCCEEEEECCCCCE
Q ss_conf             9996----------8981999994479313477986156----6674499961799906999971799699998448954
Q 001415          436 GVAY----------SRHIVQIYSYHGGDEVRQHLEIDAH----VGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAK  501 (1082)
Q Consensus       436 as~~----------~d~~i~iwd~~~~~~~~~~~~~~~h----~~~V~~i~fs~dg~~~~l~s~s~d~~i~iWd~~~~~~  501 (1082)
                      ++.+          .++.|.+||..+++..........+    ......++|+++++.++++..+.+..+.+|+..+++.
T Consensus        62 ~v~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~  141 (355)
T d2bbkh_          62 AHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAF  141 (355)
T ss_dssp             EEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEE
T ss_pred             EEEECCCCCCCCCCCCCEEEEEECCCCCEEEEEECCCCCEEECCCCCCEEEEECCCCEEEEECCCCCCEEEEEECCCCCE
T ss_conf             99967776420158999899999999979889805886403117987349993388715773279882045430578837


Q ss_pred             EEEEECCCCCEEEEEEEECCCCEEEEEECCCCCEEEEECCCCCCEEEECCCCCCEEEEEECCCCCEEEECCCCCCEEEEE
Q ss_conf             69940688674898311048943999964899189994688993134238997157879866997366231146306999
Q 001415          502 QYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQ  581 (1082)
Q Consensus       502 ~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~i~~~~  581 (1082)
                      +..+..+.....   + +... ...+..+.|+....+.                                          
T Consensus       142 ~~~~~~~~~~~~---~-~~~~-~~~~~~~~dg~~~~v~------------------------------------------  174 (355)
T d2bbkh_         142 KRMLDVPDCYHI---F-PTAP-DTFFMHCRDGSLAKVA------------------------------------------  174 (355)
T ss_dssp             EEEEECCSEEEE---E-EEET-TEEEEEETTSCEEEEE------------------------------------------
T ss_pred             EEEEECCCCCEE---E-ECCC-CCEEEECCCCCEEEEE------------------------------------------
T ss_conf             667705874047---3-0699-6369993899989998------------------------------------------


Q ss_pred             ECCCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCCCCCEEEECCCCCEEEEEECCCCEEEEEECCCCCCEE-ECCCC
Q ss_conf             41899979997079829999878851379970599999968089869998999997899679998038941101-01244
Q 001415          582 FDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLR-TFENL  660 (1082)
Q Consensus       582 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~iwd~~~~~~~~~-~~~~~  660 (1082)
                                ...++.+.+++......       .....+....+.+++..++..+.++.+.+|+...+..... ....+
T Consensus       175 ----------~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  237 (355)
T d2bbkh_         175 ----------FGTEGTPEITHTEVFHP-------EDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEAL  237 (355)
T ss_dssp             ----------CCSSSCCEEEECCCCSC-------TTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESS
T ss_pred             ----------ECCCCEEEEEECCCCCC-------EECCEEEECCCCCCCCEEEEECCCCEEEEEECCCCCEEEEECCCCC
T ss_conf             ----------34787379996243330-------0011061021538997388746998299996589907998445784


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEECCCC
Q ss_conf             33223333356799821147888601211699322898203578774222234676446640379991697514431267
Q 001415          661 AYDASRTSENSKNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASN  740 (1082)
Q Consensus       661 ~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~d  740 (1082)
                      .....  ...+                                              .......+++++++..++....+
T Consensus       238 ~~~~~--~~~~----------------------------------------------~p~~~~~~~~~~d~~~~~~~~~~  269 (355)
T d2bbkh_         238 TEAER--ADGW----------------------------------------------RPGGWQQVAYHRALDRIYLLVDQ  269 (355)
T ss_dssp             CHHHH--HTTE----------------------------------------------EECSSSCEEEETTTTEEEEEEEE
T ss_pred             CCCEE--EEEE----------------------------------------------ECCCEEEEEEECCCCEEEEEECC
T ss_conf             41268--5433----------------------------------------------03510899980799767887406


Q ss_pred             CEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCEEEEECCCCEEEEEECCEEEEEECCCCEEE
Q ss_conf             75999630332247998765555862018998620103468999998801899604998389940990899866898057
Q 001415          741 AIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTM  820 (1082)
Q Consensus       741 g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~dg~~l~~~sdg~i~iwd~~~~~~~  820 (1082)
                      +.                                                        ........+.|.+||..+++.+
T Consensus       270 ~~--------------------------------------------------------~~~~~~~~~~v~v~d~~t~~~~  293 (355)
T d2bbkh_         270 RD--------------------------------------------------------EWRHKTASRFVVVLDAKTGERL  293 (355)
T ss_dssp             CC--------------------------------------------------------TTCTTSCEEEEEEEETTTCCEE
T ss_pred             CC--------------------------------------------------------CEEECCCCCEEEEEECCCCCEE
T ss_conf             87--------------------------------------------------------1265179975999867888498


Q ss_pred             EEECCCCCCEEEEEEECCCCC--EEEEEECCCCEEEEECCCCEEEEEECCCCCCEEEEEEECC
Q ss_conf             897799998059999059995--7999747995899962033121352235557899999579
Q 001415          821 ATFMPPPPAATFLAFHPQDNN--IIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHA  881 (1082)
Q Consensus       821 ~~~~~~~~~v~~i~~sp~~~~--~lasg~~dg~I~iwd~~~~~~~~~l~~h~~~V~~i~~s~d  881 (1082)
                      ..+. +...+.+++|+| |++  +++++..|+.|++||..+++.+..+.++......+.+.++
T Consensus       294 ~~~~-~~~~~~~~a~sp-DG~~~l~v~~~~d~~i~v~D~~tg~~~~~i~~~G~~p~~i~~~d~  354 (355)
T d2bbkh_         294 AKFE-MGHEIDSINVSQ-DEKPLLYALSTGDKTLYIHDAESGEELRSVNQLGHGPQVITTADM  354 (355)
T ss_dssp             EEEE-EEEEECEEEECC-SSSCEEEEEETTTTEEEEEETTTCCEEEEECCCCSSCCEEECCCC
T ss_pred             EEEC-CCCCEEEEEECC-CCCEEEEEEECCCCEEEEEECCCCCEEEEEECCCCCCCEEEECCC
T ss_conf             9966-899877999928-999699999789998999999999899999286979658996999

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.87  E-value=2.8e-18  Score=135.92  Aligned_cols=128  Identities=17%  Similarity=0.178  Sum_probs=66.0

Q ss_pred             EEEEECCCCCEEEEECCCCCEEEEECEEEECCCCCCCCCCCCCCCCCCCCEEEEEEECCCCEEEEEE-CCCEEEEEECCC
Q ss_conf             9999807991999972564135651116521577883211011369897555999902998699996-898199999447
Q 001415          373 LLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAY-SRHIVQIYSYHG  451 (1082)
Q Consensus       373 llasgs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~i~~spdg~~las~~-~d~~i~iwd~~~  451 (1082)
                      ++++++.|++|++|+++....+...                 ....|.+.+..++|||||++|++++ .|+.|.+|++..
T Consensus         6 v~v~~~~~~~I~v~~~~~~~~l~~~-----------------~~~~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~   68 (333)
T d1ri6a_           6 VYIASPESQQIHVWNLNHEGALTLT-----------------QVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAP   68 (333)
T ss_dssp             EEEEEGGGTEEEEEEECTTSCEEEE-----------------EEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECT
T ss_pred             EEEECCCCCCEEEEEECCCCCEEEE-----------------EEECCCCCEEEEEEECCCCEEEEEECCCCEEEEEEEEC
T ss_conf             9998789993899998399976999-----------------99757998868999589799999977899699999968


Q ss_pred             CCEEEEEEEEECCCCCEEEEEECCCCCCEEEEEEE-CCCCEEEEECCCCCEEEEE--ECCCCCEEEEEEEE
Q ss_conf             93134779861566674499961799906999971-7996999984489546994--06886748983110
Q 001415          452 GDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCG-DDKTIKVWDATNGAKQYIF--EGHEAPVYSVCPHH  519 (1082)
Q Consensus       452 ~~~~~~~~~~~~h~~~V~~i~fs~dg~~~~l~s~s-~d~~i~iWd~~~~~~~~~~--~~h~~~v~~i~~~~  519 (1082)
                      ............+...+..++|+|||+  ++++++ .++.+.+|+..........  ..+...+.++.+++
T Consensus        69 ~~~~~~~~~~~~~~~~p~~l~~spDg~--~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~  137 (333)
T d1ri6a_          69 DDGALTFAAESALPGSLTHISTDHQGQ--FVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISP  137 (333)
T ss_dssp             TTCCEEEEEEEECSSCCSEEEECTTSS--EEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECT
T ss_pred             CCCCEEEEEECCCCCCCEEEEECCCCC--EEEECCCCCCCEEEECCCCCCCEECCCCCCCCCCCEEEEEEE
T ss_conf             987079853013699854999959998--874205688830220011100000010037785314988630

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.86  E-value=5.5e-18  Score=133.92  Aligned_cols=59  Identities=14%  Similarity=0.080  Sum_probs=39.0

Q ss_pred             CEEEEEECCCCCEEEEECCCCCCCCEEEEEECCCCCE--EEEEECCCCEEEEECCCCEEEEEEC
Q ss_conf             8299997267621000002799965448998689966--9996468819998469960346527
Q 001415          941 TQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQL--VYACFLDATVCVFSAANLKLRCRIN 1002 (1082)
Q Consensus       941 ~~i~iwd~~~~~~~~~~~~~~h~~~i~~i~~s~dg~~--l~t~s~dg~i~iwd~~~~~~~~~~~ 1002 (1082)
                      ..+.+||..+++.+..+..   ...+.+++|+|||+.  ++++..|+.|.+||+.+++++..+.
T Consensus       280 ~~v~v~d~~t~~~~~~~~~---~~~~~~~a~spDG~~~l~v~~~~d~~i~v~D~~tg~~~~~i~  340 (355)
T d2bbkh_         280 RFVVVLDAKTGERLAKFEM---GHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVN  340 (355)
T ss_dssp             EEEEEEETTTCCEEEEEEE---EEEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEEC
T ss_pred             CEEEEEECCCCCEEEEECC---CCCEEEEEECCCCCEEEEEEECCCCEEEEEECCCCCEEEEEE
T ss_conf             7599986788849899668---998779999289996999997899989999999998999992

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.84  E-value=1.8e-17  Score=130.40  Aligned_cols=74  Identities=9%  Similarity=0.108  Sum_probs=28.8

Q ss_pred             CEEEECCCCCEEEEE--ECCEEEEEECCCCCEEEEEC-CCCCCCCEEEEEECCCCCEEEEEE-CCCCEEEEE--CCCCEE
Q ss_conf             389981788499999--36829999726762100000-279996544899868996699964-688199984--699603
Q 001415          924 TRVQFHQDQIHFLVV--HETQLAIFETTKLECVKQWV-PRESSAPITHATFSCDSQLVYACF-LDATVCVFS--AANLKL  997 (1082)
Q Consensus       924 ~~i~fspdg~~l~~~--~d~~i~iwd~~~~~~~~~~~-~~~h~~~i~~i~~s~dg~~l~t~s-~dg~i~iwd--~~~~~~  997 (1082)
                      ..+++++|++++.+.  .++.+.+|++.......... .......+.+++|||||++|++++ .++.|.+|+  ..+|++
T Consensus       233 ~~~~~s~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~a~spDGk~l~va~~~~~~v~v~~id~~tG~l  312 (333)
T d1ri6a_         233 ADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQGLL  312 (333)
T ss_dssp             EEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSSCCCEEECTTSSEEEEECTTTCEEEEEEEETTTTEE
T ss_pred             EEEEEECCCCCEEEECCCCCEEEEEEECCCCCEEEEEEEECCCCCEEEEEEECCCCEEEEEECCCCEEEEEEEECCCCCE
T ss_conf             26899515672055045688278788739997899999967899762899907989999998899939999997999968

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.81  E-value=5.1e-16  Score=120.47  Aligned_cols=121  Identities=16%  Similarity=0.131  Sum_probs=93.2

Q ss_pred             EEEEEECCCCEEEEEECCCCCEEEEECCCCCEEEEECEEEECCCCCCCCCCCCCCCCCCCCEEEEEEECCCCEEEEEEC-
Q ss_conf             2889805898299998079919999725641356511165215778832110113698975559999029986999968-
Q 001415          362 MSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYS-  440 (1082)
Q Consensus       362 ~~~~fspdg~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~i~~spdg~~las~~~-  440 (1082)
                      ..+.|++|+++ +..  .++.+.+||+.+++.....              ....+..|...|.++.|||||++||+++. 
T Consensus        20 ~~~~W~~d~~~-~~~--~~~~~~~~~~~t~~~~~~~--------------~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~   82 (470)
T d2bgra1          20 YSLRWISDHEY-LYK--QENNILVFNAEYGNSSVFL--------------ENSTFDEFGHSINDYSISPDGQFILLEYNY   82 (470)
T ss_dssp             CCCEECSSSEE-EEE--SSSCEEEEETTTCCEEEEE--------------CTTTTTTSSSCCCEEEECTTSSEEEEEEEE
T ss_pred             CCCEECCCCEE-EEE--CCCCEEEEECCCCCEEEEE--------------CHHHHHHCCCCCCEEEECCCCCEEEEEECC
T ss_conf             57896899979-997--5994999988999789997--------------015644316765405998988979999777


Q ss_pred             --------CCEEEEEECCCCCEEEEEEEEECCCCCEEEEEECCCCCCEEEEEEECCCCEEEEECCCCCEEEEEE
Q ss_conf             --------981999994479313477986156667449996179990699997179969999844895469940
Q 001415          441 --------RHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFE  506 (1082)
Q Consensus       441 --------d~~i~iwd~~~~~~~~~~~~~~~h~~~V~~i~fs~dg~~~~l~s~s~d~~i~iWd~~~~~~~~~~~  506 (1082)
                              ++.+.+||+.+++..    .+..+.+.+..+.|||||+  .++.. .++.+.+|+..++...+...
T Consensus        83 ~~~~r~s~~~~~~l~d~~~~~~~----~l~~~~~~~~~~~~SPDG~--~ia~~-~~~~l~~~~~~~g~~~~~t~  149 (470)
T d2bgra1          83 VKQWRHSYTASYDIYDLNKRQLI----TEERIPNNTQWVTWSPVGH--KLAYV-WNNDIYVKIEPNLPSYRITW  149 (470)
T ss_dssp             EECSSSCEEEEEEEEETTTTEEC----CSSCCCTTEEEEEECSSTT--CEEEE-ETTEEEEESSTTSCCEECCS
T ss_pred             CCEEEECCCCEEEEEECCCCCCC----CCCCCCCCCCCCCCCCCCC--EEEEE-ECCCCEEEECCCCCEEEEEE
T ss_conf             10001046734999989888513----1246874231010146764--13575-14641379889994653210

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.76  E-value=3.8e-14  Score=107.71  Aligned_cols=115  Identities=12%  Similarity=0.056  Sum_probs=77.7

Q ss_pred             EEEEEECCCCEEEEEECCCEEEEEECCCCCEEEEE--EEEECCCCCEEEEEECCCCCCEEEEEEE---------CCCCEE
Q ss_conf             59999029986999968981999994479313477--9861566674499961799906999971---------799699
Q 001415          424 NRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQH--LEIDAHVGGVNDIAFSHPNKQLCVITCG---------DDKTIK  492 (1082)
Q Consensus       424 ~~i~~spdg~~las~~~d~~i~iwd~~~~~~~~~~--~~~~~h~~~V~~i~fs~dg~~~~l~s~s---------~d~~i~  492 (1082)
                      ..+.|.+|++++..  .++.+.+||+.+++....+  ..+..|...|.++.|||||+.  |+.++         .++.+.
T Consensus        20 ~~~~W~~d~~~~~~--~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~SpDg~~--i~~~~~~~~~~r~s~~~~~~   95 (470)
T d2bgra1          20 YSLRWISDHEYLYK--QENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQF--ILLEYNYVKQWRHSYTASYD   95 (470)
T ss_dssp             CCCEECSSSEEEEE--SSSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECTTSSE--EEEEEEEEECSSSCEEEEEE
T ss_pred             CCCEECCCCEEEEE--CCCCEEEEECCCCCEEEEECHHHHHHCCCCCCEEEECCCCCE--EEEEECCCCEEEECCCCEEE
T ss_conf             57896899979997--599499998899978999701564431676540599898897--99997771000104673499


Q ss_pred             EEECCCCCEEEEEECCCCCEEEEEEEECCCCEEEEEECCCCCEEEEECCCCCCE
Q ss_conf             998448954699406886748983110489439999648991899946889931
Q 001415          493 VWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSR  546 (1082)
Q Consensus       493 iWd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~  546 (1082)
                      +||+.+++ +..+..+...+..+.|+|++  +.++.. .++.+.+|+...+...
T Consensus        96 l~d~~~~~-~~~l~~~~~~~~~~~~SPDG--~~ia~~-~~~~l~~~~~~~g~~~  145 (470)
T d2bgra1          96 IYDLNKRQ-LITEERIPNNTQWVTWSPVG--HKLAYV-WNNDIYVKIEPNLPSY  145 (470)
T ss_dssp             EEETTTTE-ECCSSCCCTTEEEEEECSST--TCEEEE-ETTEEEEESSTTSCCE
T ss_pred             EEECCCCC-CCCCCCCCCCCCCCCCCCCC--CEEEEE-ECCCCEEEECCCCCEE
T ss_conf             99898885-13124687423101014676--413575-1464137988999465

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.73  E-value=8.3e-15  Score=112.21  Aligned_cols=156  Identities=10%  Similarity=-0.034  Sum_probs=98.9

Q ss_pred             CCCCCEEEEEECCCCEEEE--EECCCCC--EEEEECCCCCEEEEECEEEECCCCCCCCCCCCCCCCCCCCEEEEEEECCC
Q ss_conf             8999328898058982999--9807991--99997256413565111652157788321101136989755599990299
Q 001415          357 QGSSPMSMDFHPVQQTLLL--VGTNVGD--IGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDG  432 (1082)
Q Consensus       357 h~~~v~~~~fspdg~~lla--sgs~dg~--i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~i~~spdg  432 (1082)
                      +.+....++.+++++...+  ....++.  |.+||..+++.+.+                   ...+...  .++|+|||
T Consensus        18 ~~g~~~~~a~~~~~~~~~v~~~~~~~g~~~~~~~d~~~~~~~~~-------------------~~~~~~~--~~a~spDg   76 (368)
T d1mdah_          18 SDGSSCDHGPGAISRRSHITLPAYFAGTTENWVSCAGCGVTLGH-------------------SLGAFLS--LAVAGHSG   76 (368)
T ss_dssp             CCCCCBCCCCCCCTTEEEEEECTTTCSSEEEEEEETTTTEEEEE-------------------EEECTTC--EEEECTTS
T ss_pred             CCCCCCCCCCCCCCCCEEEEEECCCCCCCEEEEEECCCCCEEEE-------------------EECCCCC--CCEECCCC
T ss_conf             67986664558987612697204578862179970899837788-------------------8578777--51398999


Q ss_pred             CEEEEEE----------CCCEEEEEECCCCCEEEEEEEEECCC-------CCEEEEEECCCCCCEEEEEEECCCCEEEEE
Q ss_conf             8699996----------89819999944793134779861566-------674499961799906999971799699998
Q 001415          433 SLFGVAY----------SRHIVQIYSYHGGDEVRQHLEIDAHV-------GGVNDIAFSHPNKQLCVITCGDDKTIKVWD  495 (1082)
Q Consensus       433 ~~las~~----------~d~~i~iwd~~~~~~~~~~~~~~~h~-------~~V~~i~fs~dg~~~~l~s~s~d~~i~iWd  495 (1082)
                      ++|++.+          .++.|.+||..+++.+..   +..+.       .....++|+|||+. ++++...++.+.+||
T Consensus        77 ~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~---i~~p~~~~~~~g~~p~~~a~SpDGk~-l~va~~~~~~v~~~d  152 (368)
T d1mdah_          77 SDFALASTSFARSAKGKRTDYVEVFDPVTFLPIAD---IELPDAPRFSVGPRVHIIGNCASSAC-LLFFLFGSSAAAGLS  152 (368)
T ss_dssp             SCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEE---EEETTSCSCCBSCCTTSEEECTTSSC-EEEEECSSSCEEEEE
T ss_pred             CEEEEECCCCCCCCCCCCCCEEEEEECCCCCEEEE---ECCCCCCEECCCCCCCCEEECCCCCE-EEEEECCCCEEEEEE
T ss_conf             88999755676401035678699998999938306---43785421024688640588789989-999968998599998


Q ss_pred             CCCCCEEEEEECCCCCEEEEEEEECCCCEEEEEECCCCCEEEEECCC
Q ss_conf             44895469940688674898311048943999964899189994688
Q 001415          496 ATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDN  542 (1082)
Q Consensus       496 ~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~  542 (1082)
                      +.+++.+..+..+.....    .+.+. ..++..+.||.+..|++..
T Consensus       153 ~~~~~~~~~~~~~~~~~~----~~~~~-~~~v~~~~Dg~~~~~~~~~  194 (368)
T d1mdah_         153 VPGASDDQLTKSASCFHI----HPGAA-ATHYLGSCPASLAASDLAA  194 (368)
T ss_dssp             ETTTEEEEEEECSSCCCC----EEEET-TEEECCCCTTSCEEEECCS
T ss_pred             CCCCCEEEEEECCCCCEE----CCCCC-CEEEEECCCCCEEEEEECC
T ss_conf             998938678604675237----46998-2399994899889998268

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.71  E-value=9.1e-15  Score=111.94  Aligned_cols=84  Identities=8%  Similarity=-0.122  Sum_probs=35.9

Q ss_pred             CCCCEEEEEEECCCCEEEEE---ECCC--EEEEEECCCCCEEEEEEEEECCCCCEEEEEECCCCCCEEEEE--------E
Q ss_conf             89755599990299869999---6898--199999447931347798615666744999617999069999--------7
Q 001415          419 PGVSVNRVIWSPDGSLFGVA---YSRH--IVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVIT--------C  485 (1082)
Q Consensus       419 h~~~V~~i~~spdg~~las~---~~d~--~i~iwd~~~~~~~~~~~~~~~h~~~V~~i~fs~dg~~~~l~s--------~  485 (1082)
                      +.+....++.++|++.....   ..++  .+.+||..+++.+.   ...++...  .++|+|||+.+++++        |
T Consensus        18 ~~g~~~~~a~~~~~~~~~v~~~~~~~g~~~~~~~d~~~~~~~~---~~~~~~~~--~~a~spDg~~i~~~~~~~~~~~~g   92 (368)
T d1mdah_          18 SDGSSCDHGPGAISRRSHITLPAYFAGTTENWVSCAGCGVTLG---HSLGAFLS--LAVAGHSGSDFALASTSFARSAKG   92 (368)
T ss_dssp             CCCCCBCCCCCCCTTEEEEEECTTTCSSEEEEEEETTTTEEEE---EEEECTTC--EEEECTTSSCEEEEEEEETTTTSS
T ss_pred             CCCCCCCCCCCCCCCCEEEEEECCCCCCCEEEEEECCCCCEEE---EEECCCCC--CCEECCCCCEEEEECCCCCCCCCC
T ss_conf             6798666455898761269720457886217997089983778---88578777--513989998899975567640103


Q ss_pred             ECCCCEEEEECCCCCEEEEEEC
Q ss_conf             1799699998448954699406
Q 001415          486 GDDKTIKVWDATNGAKQYIFEG  507 (1082)
Q Consensus       486 s~d~~i~iWd~~~~~~~~~~~~  507 (1082)
                      +.|+.|.+||..+++++..+..
T Consensus        93 ~~d~~v~v~D~~t~~~~~~i~~  114 (368)
T d1mdah_          93 KRTDYVEVFDPVTFLPIADIEL  114 (368)
T ss_dssp             SEEEEEEEECTTTCCEEEEEEE
T ss_pred             CCCCEEEEEECCCCCEEEEECC
T ss_conf             5678699998999938306437

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.67  E-value=1.2e-16  Score=124.85  Aligned_cols=188  Identities=12%  Similarity=0.060  Sum_probs=95.8

Q ss_pred             CCCEEEEEECCCCCEEEEECCCCCEEEEECEEEECCCCCCCCCCCCCCCCCCCCEEEEEEECCCCEEEEEECCCEEEEEE
Q ss_conf             89829999807991999972564135651116521577883211011369897555999902998699996898199999
Q 001415          369 VQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYS  448 (1082)
Q Consensus       369 dg~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~i~~spdg~~las~~~d~~i~iwd  448 (1082)
                      |+-+.+++|+.+|.|.+|++.+++.+.+..                            .|+|++... .+..+.+.+++.
T Consensus         9 De~y~f~Sgg~sG~V~V~dlpS~r~l~~Ip----------------------------Vfspd~~~g-~g~~~es~~vl~   59 (441)
T d1qnia2           9 DEYYGFWSGGHQGEVRVLGVPSMRELMRIP----------------------------VFNVDSATG-WGITNESKEILG   59 (441)
T ss_dssp             CSEEEEEECBTTCCEEEEEETTTEEEEEEC----------------------------SSSBCTTTC-TTTSHHHHHHHC
T ss_pred             CCEEEEEECCCCCCEEEEECCCCCEEEEEE----------------------------EECCCCCEE-EEECCCCCEEEE
T ss_conf             877999968877748999678980799997----------------------------675789879-998886504783


Q ss_pred             CCCCCEEEEEEEEECCCCCEEEEEECCCCCCEEEEEEECCCCEEEEECCCCCEEEEEEC-CCCCEEEEEEEECCCCEEEE
Q ss_conf             44793134779861566674499961799906999971799699998448954699406-88674898311048943999
Q 001415          449 YHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEG-HEAPVYSVCPHHKENIQFIF  527 (1082)
Q Consensus       449 ~~~~~~~~~~~~~~~h~~~V~~i~fs~dg~~~~l~s~s~d~~i~iWd~~~~~~~~~~~~-h~~~v~~i~~~~~~~~~~l~  527 (1082)
                        ......   ....|........++|||++ ++++...+..|.++|+.++++...+.- +......++|++++...+++
T Consensus        60 --~~~~~~---~gd~hhP~~s~t~gtpDGr~-lfV~d~~~~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~  133 (441)
T d1qnia2          60 --GDQQYL---NGDCHHPHISMTDGRYDGKY-LFINDKANTRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVF  133 (441)
T ss_dssp             --SSSCCS---CCCBCCCEEEEETTEEEEEE-EEEEETTTTEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEE
T ss_pred             --CCCCCC---CCCCCCCCCCEECCCCCCCE-EEEECCCCCEEEEEECCCCCEEEEEECCCCCCCCCEEEECCCCEEEEE
T ss_conf             --133225---67556777221032688888-999738999799998877847557956788786434870569989999


Q ss_pred             EECCCCCEEEEECCCCCCEEEECCCCCCEEEEEECCCCCEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCC
Q ss_conf             96489918999468899313423899715787986699736623114630699941899979997079829999878851
Q 001415          528 STALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQ  607 (1082)
Q Consensus       528 s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~  607 (1082)
                      ..+.+..-.                         ..++...              ..+       .....+..+|..+.+
T Consensus       134 ~~~~~~v~~-------------------------~~dg~~~--------------~~~-------~~~~~~~~iD~~t~~  167 (441)
T d1qnia2         134 CNAEFVIPQ-------------------------PNDGTDF--------------SLD-------NSYTMFTAIDAETMD  167 (441)
T ss_dssp             EEECSCEES-------------------------SCSSSCC--------------CGG-------GEEEEEEEEETTTCS
T ss_pred             ECCCCCCCC-------------------------CCCCCCC--------------CCC-------CCCCEEEEECCCCCE
T ss_conf             566775443-------------------------6766300--------------145-------553238866375560


Q ss_pred             EEEEEECCCCCCCCCEEEECCCCCEEEEEECCC
Q ss_conf             379970599999968089869998999997899
Q 001415          608 LLTSIDADGGLPASPRIRFNKDGCLLAVSTNDN  640 (1082)
Q Consensus       608 ~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg  640 (1082)
                      ....+...+.   ...+.++|+|+++++.+.+.
T Consensus       168 v~~qI~v~~~---p~~v~~spdGk~a~vt~~ns  197 (441)
T d1qnia2         168 VAWQVIVDGN---LDNTDADYTGKYATSTCYNS  197 (441)
T ss_dssp             EEEEEEESSC---CCCEEECSSSSEEEEEESCT
T ss_pred             EEEEEECCCC---CCCEEECCCCCEEEEEECCC
T ss_conf             6478736998---65469879999899985178

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.61  E-value=8.1e-15  Score=112.27  Aligned_cols=361  Identities=9%  Similarity=-0.040  Sum_probs=184.7

Q ss_pred             EEEEEEECCCCEEEEECCCCCEEEEEECCCCCEEEEEEEECCCCEEEEEECCCCCEEEEECCCCCCEEEECCCCCCEEEE
Q ss_conf             69999717996999984489546994068867489831104894399996489918999468899313423899715787
Q 001415          480 LCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTM  559 (1082)
Q Consensus       480 ~~l~s~s~d~~i~iWd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~  559 (1082)
                      ..++|++.+|.|++|++.+++.++++..         |++++.  . ..+..+.+.+++...  ........|..     
T Consensus        12 y~f~Sgg~sG~V~V~dlpS~r~l~~IpV---------fspd~~--~-g~g~~~es~~vl~~~--~~~~~gd~hhP-----   72 (441)
T d1qnia2          12 YGFWSGGHQGEVRVLGVPSMRELMRIPV---------FNVDSA--T-GWGITNESKEILGGD--QQYLNGDCHHP-----   72 (441)
T ss_dssp             EEEEECBTTCCEEEEEETTTEEEEEECS---------SSBCTT--T-CTTTSHHHHHHHCSS--SCCSCCCBCCC-----
T ss_pred             EEEEECCCCCCEEEEECCCCCEEEEEEE---------ECCCCC--E-EEEECCCCCEEEECC--CCCCCCCCCCC-----
T ss_conf             9999688777489996789807999976---------757898--7-999888650478313--32256755677-----


Q ss_pred             EECCCCCEEEECCCCCCEEEEEECCCCCEEEEE-ECCCEEEEEECCCCCEEEEEECCCCCCCCCEEEECCCCCE--EEEE
Q ss_conf             986699736623114630699941899979997-0798299998788513799705999999680898699989--9999
Q 001415          560 AYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAA-GDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCL--LAVS  636 (1082)
Q Consensus       560 ~~s~d~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~--l~~~  636 (1082)
                                      ........|||+++++. ..++.|.++|+.+++....+..... .....++|+|+++.  ++..
T Consensus        73 ----------------~~s~t~gtpDGr~lfV~d~~~~rVavIDl~t~k~~~ii~iP~g-~gphgi~~spdg~t~YV~~~  135 (441)
T d1qnia2          73 ----------------HISMTDGRYDGKYLFINDKANTRVARIRLDIMKTDKITHIPNV-QAIHGLRLQKVPKTNYVFCN  135 (441)
T ss_dssp             ----------------EEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECTTC-CCEEEEEECCSSBCCEEEEE
T ss_pred             ----------------CCCEECCCCCCCEEEEECCCCCEEEEEECCCCCEEEEEECCCC-CCCCCEEEECCCCEEEEEEC
T ss_conf             ----------------7221032688888999738999799998877847557956788-78643487056998999956


Q ss_pred             ECCCCEEEEEECCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCEEEEEECCCCCCCCCCCCCCCCC
Q ss_conf             78996799980389411010124433223333356799821147888601211699322898203578774222234676
Q 001415          637 TNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPEN  716 (1082)
Q Consensus       637 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~  716 (1082)
                      +.+ .+.+  ...+                                ..+..-.....+..+|..++....++   .    
T Consensus       136 ~~~-~v~~--~~dg--------------------------------~~~~~~~~~~~~~~iD~~t~~v~~qI---~----  173 (441)
T d1qnia2         136 AEF-VIPQ--PNDG--------------------------------TDFSLDNSYTMFTAIDAETMDVAWQV---I----  173 (441)
T ss_dssp             ECS-CEES--SCSS--------------------------------SCCCGGGEEEEEEEEETTTCSEEEEE---E----
T ss_pred             CCC-CCCC--CCCC--------------------------------CCCCCCCCCCEEEEECCCCCEEEEEE---E----
T ss_conf             677-5443--6766--------------------------------30014555323886637556064787---3----


Q ss_pred             CCCCCEEEEEECCCCCEEEECCCCCE-EEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCEEEEE
Q ss_conf             44664037999169751443126775-99963033224799876555586201899862010346899999880189960
Q 001415          717 LRATKISRLIFTNSGNAILALASNAI-HLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALS  795 (1082)
Q Consensus       717 ~~~~~i~~i~~s~~~~~l~~~~~dg~-i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s  795 (1082)
                       -......+.++|+|+++++.+.+.. +..++.                      .+........    .......+.++
T Consensus       174 -v~~~p~~v~~spdGk~a~vt~~nse~~~~id~----------------------~t~~~~d~i~----v~n~p~~~~~~  226 (441)
T d1qnia2         174 -VDGNLDNTDADYTGKYATSTCYNSERAVDLAG----------------------TMRNDRDWVV----VFNVERIAAAV  226 (441)
T ss_dssp             -ESSCCCCEEECSSSSEEEEEESCTTCCSSHHH----------------------HTCSSBCEEE----EEEHHHHHHHH
T ss_pred             -CCCCCCCEEECCCCCEEEEEECCCCCEEEEEC----------------------CCCCEEEEEE----ECCCCCEEEEE
T ss_conf             -69986546987999989998517873189851----------------------5712178999----68851107996


Q ss_pred             CCCCEEEEEECCEEEEEECCCCEEEEEECCCCCCEEEEEEECCCCCEE-EEEECCCCEEEEECCCCEEE--------EEE
Q ss_conf             499838994099089986689805789779999805999905999579-99747995899962033121--------352
Q 001415          796 KNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNII-AIGMDDSSIQIYNVRVDEVK--------SKL  866 (1082)
Q Consensus       796 ~dg~~l~~~sdg~i~iwd~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l-asg~~dg~I~iwd~~~~~~~--------~~l  866 (1082)
                      ++|+++..++++.+.++.......+..+.... ....+.++| ||+++ +++..+++|.+||+.+....        ..+
T Consensus       227 ~dGk~~~v~~~~v~vvd~~~~~~v~~~IPvgk-sPhGv~vSP-DGkyl~~~~~~~~tvsv~d~~k~~~~~~~~~~~~~~~  304 (441)
T d1qnia2         227 KAGNFKTIGDSKVPVVDGRGESEFTRYIPVPK-NPHGLNTSP-DGKYFIANGKLSPTVSVIAIDKLDDLFEDKIELRDTI  304 (441)
T ss_dssp             HTTCCBCCTTCCCCEEECSSSCSSEEEECCBS-SCCCEEECT-TSCEEEEECTTSSBEEEEEGGGHHHHTTTSSCGGGGE
T ss_pred             CCCCEEEECCCCCEEEECCCCCCEEEEEECCC-CCCCCEECC-CCCEEEEECCCCCCEEEEEEEHHHHHHHCCCCCCEEE
T ss_conf             69999996999828998036870689971798-866726899-9878999077599389998322445752568842479


Q ss_pred             CCCC---CCEEEEEEECCCCEEEEEECCCCEEEEECCCCCCCCCEEEECCCCCCCCCCCCCEEEECCCCCEEEEEECCEE
Q ss_conf             2355---5789999957999899992899499999578631123021036899898899938998178849999936829
Q 001415          867 KGHS---KRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQL  943 (1082)
Q Consensus       867 ~~h~---~~V~~i~~s~d~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~i~fspdg~~l~~~~d~~i  943 (1082)
                      .++.   -.....+|.++|..+.+...|..|..|++....       ....+...                     +..+
T Consensus       305 ~~~~~~glgplh~~fd~~g~~yts~~~ds~v~kw~~~~~~-------~~~~~~~~---------------------~~v~  356 (441)
T d1qnia2         305 VAEPELGLGPLHTTFDGRGNAYTTLFIDSQVCKWNIADAI-------KHYNGDRV---------------------NYIR  356 (441)
T ss_dssp             EECCBCCSCEEEEEECSSSEEEEEETTTTEEEEEEHHHHH-------HHHTTCCC---------------------CCEE
T ss_pred             EEECCCCCCCCCCEECCCCEEEECCCCCCEEEEECCCHHH-------HHHCCCCC---------------------CEEE
T ss_conf             9601455476652265785599852443168972354221-------33226777---------------------6568


Q ss_pred             EEEECCCCCEEEEECCCCCCCCEEEEEECCCCCEEEEEEC
Q ss_conf             9997267621000002799965448998689966999646
Q 001415          944 AIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFL  983 (1082)
Q Consensus       944 ~iwd~~~~~~~~~~~~~~h~~~i~~i~~s~dg~~l~t~s~  983 (1082)
                      .-+++.       + ..+|...+.+.+++|||+||++++.
T Consensus       357 ~~~~v~-------y-~~GH~~~~~~~t~~pdGk~l~s~~k  388 (441)
T d1qnia2         357 QKLDVQ-------Y-QPGHNHASLTESRDADGKWLVVLSK  388 (441)
T ss_dssp             EEEECS-------S-CEEEEEETTTTSTTCCCCEEEEEES
T ss_pred             ECCCCC-------C-CCCCCCCCCCCCCCCCCCEEEECCC
T ss_conf             645326-------6-8987752454223898848996574

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=99.53  E-value=9.7e-11  Score=84.42  Aligned_cols=31  Identities=0%  Similarity=-0.131  Sum_probs=15.2

Q ss_pred             CEEEEEECC-CCCEEEEEE-CCCCEEEEECCCC
Q ss_conf             544899868-996699964-6881999846996
Q 001415          965 PITHATFSC-DSQLVYACF-LDATVCVFSAANL  995 (1082)
Q Consensus       965 ~i~~i~~s~-dg~~l~t~s-~dg~i~iwd~~~~  995 (1082)
                      ....++++| +|++|+++. .++.|.+|++...
T Consensus       310 ~p~~i~~~p~~G~~l~va~~~s~~v~v~~~~~~  342 (365)
T d1jofa_         310 HSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE  342 (365)
T ss_dssp             TCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred             CCCEEEECCCCCCEEEEEECCCCEEEEEEEECC
T ss_conf             864789648999999999679994999998288

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=99.49  E-value=8.9e-10  Score=77.86  Aligned_cols=245  Identities=14%  Similarity=0.095  Sum_probs=138.2

Q ss_pred             CCCEEEECCCCCCCEEEEEECCCCEEEEEECCCCCEEEEECCCCCEEEEECEEEECCCCCCCCCCCCCCCCCCCCEEEEE
Q ss_conf             74446604789993288980589829999807991999972564135651116521577883211011369897555999
Q 001415          348 PKTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVI  427 (1082)
Q Consensus       348 ~~~~~~~~~h~~~v~~~~fspdg~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~i~  427 (1082)
                      +.+++..+.....+..++++|||+ |+++...++.|..|+.......                     +......+.+++
T Consensus        17 ~~~v~~~~p~~~~~e~iAv~pdG~-l~vt~~~~~~I~~i~p~g~~~~---------------------~~~~~~~~~gla   74 (302)
T d2p4oa1          17 PAKIITSFPVNTFLENLASAPDGT-IFVTNHEVGEIVSITPDGNQQI---------------------HATVEGKVSGLA   74 (302)
T ss_dssp             CEEEEEEECTTCCEEEEEECTTSC-EEEEETTTTEEEEECTTCCEEE---------------------EEECSSEEEEEE
T ss_pred             CCCEEEECCCCCCCCCEEECCCCC-EEEEECCCCEEEEEECCCCEEE---------------------EECCCCCCCEEE
T ss_conf             620788888998847877999988-9999688998999908998899---------------------971799853689


Q ss_pred             EECCCCEEEEEECCCEEEEEECCCCCEEEEEEEEECCCCCEEEEEECCCCCCEEEEEEECCCCEEEEECCCCCEEEEEEC
Q ss_conf             90299869999689819999944793134779861566674499961799906999971799699998448954699406
Q 001415          428 WSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEG  507 (1082)
Q Consensus       428 ~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~V~~i~fs~dg~~~~l~s~s~d~~i~iWd~~~~~~~~~~~~  507 (1082)
                      |++||+++++...++.+..|+......................+++.+++.  ++++.+.++.+..++...+........
T Consensus        75 ~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~i~~~~~g~--~~v~~~~~~~i~~~~~~~~~~~~~~~~  152 (302)
T d2p4oa1          75 FTSNGDLVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQ--YLTADSYRGAIWLIDVVQPSGSIWLEH  152 (302)
T ss_dssp             ECTTSCEEEEEECTTSCEEEEEECTTSCEEEEEECTTCSCEEEEEESSSSE--EEEEETTTTEEEEEETTTTEEEEEEEC
T ss_pred             ECCCCCEEEEECCCCEEEEEEECCCCCCEEECCCCCCCCCCCEEEECCCCC--EEEECCCCCCCEEEECCCCCCEEEECC
T ss_conf             867788699832895378887101111012102357863221667715797--875035655410242168730367518


Q ss_pred             --------C--CCCEEEEEEEECCCCEEEEEECCCCCEEEEECCCCCCEEEECCCCCCEEEEEECCCCCEEEECCCCCCE
Q ss_conf             --------8--867489831104894399996489918999468899313423899715787986699736623114630
Q 001415          508 --------H--EAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSL  577 (1082)
Q Consensus       508 --------h--~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~i  577 (1082)
                              +  ......+.+  +.+ .++++.+..+.|..++...........     ..              ......
T Consensus       153 ~~~~~~~~~~~~~~~ngi~~--~~~-~l~~~~~~~~~i~~~~~~~~~~~~~~~-----~~--------------~~~~~p  210 (302)
T d2p4oa1         153 PMLARSNSESVFPAANGLKR--FGN-FLYVSNTEKMLLLRIPVDSTDKPGEPE-----IF--------------VEQTNI  210 (302)
T ss_dssp             GGGSCSSTTCCSCSEEEEEE--ETT-EEEEEETTTTEEEEEEBCTTSCBCCCE-----EE--------------EESCCC
T ss_pred             CCCCEEECCCCCCCCCCCCC--CCC-CEEEECCCCCEEEECCCCCCCCCCCCC-----CC--------------CCCCCC
T ss_conf             86401431576322432011--698-304403788769863443333234531-----01--------------589987


Q ss_pred             EEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCCCCCEEEE---CCCCCEEEEEECC
Q ss_conf             6999418999799970798299998788513799705999999680898---6999899999789
Q 001415          578 GVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRF---NKDGCLLAVSTND  639 (1082)
Q Consensus       578 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~---s~dg~~l~~~~~d  639 (1082)
                      ..++++++++.+++...++.|..++.. ++..............++++|   ++|++.|++++..
T Consensus       211 dgia~d~dG~l~va~~~~~~V~~i~p~-G~~~~~~~~~~~~~~pt~vafg~~~~D~~~Lyvtt~~  274 (302)
T d2p4oa1         211 DDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTIIAQAEQGVIGSTAVAFGQTEGDCTAIYVVTNG  274 (302)
T ss_dssp             SSEEEBTTCCEEEECBTTCCEEEECTT-CCEEEEECGGGTCTTEEEEEECCSTTTTTEEEEEECT
T ss_pred             CCEEECCCCCEEEEECCCCCEEEECCC-CCEEEEEECCCCCCCCEEEEECCCCCCCCEEEEECCC
T ss_conf             523787999999997489918998789-9789999637898882489970878878989999889

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=99.45  E-value=4.1e-09  Score=73.33  Aligned_cols=56  Identities=5%  Similarity=-0.026  Sum_probs=24.5

Q ss_pred             CEEEEEEECCCCEEEEEECCCEEEEEECCCCCEEEEEEEEECCCCCEEEEEECCCCCC
Q ss_conf             5559999029986999968981999994479313477986156667449996179990
Q 001415          422 SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQ  479 (1082)
Q Consensus       422 ~V~~i~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~V~~i~fs~dg~~  479 (1082)
                      .++.|+|+||+++|.++.. +.+..|.+.....+...... ........++++++++.
T Consensus        41 ~~s~la~s~d~~~ly~~~~-~~~~~~~i~~~~~~~~~~~~-~~~~~p~~v~~~~~~~~   96 (365)
T d1jofa_          41 PISWMTFDHERKNIYGAAM-KKWSSFAVKSPTEIVHEASH-PIGGHPRANDADTNTRA   96 (365)
T ss_dssp             CCSEEEECTTSSEEEEEEB-TEEEEEEEEETTEEEEEEEE-ECCSSGGGGCTTSCCEE
T ss_pred             CCCEEEECCCCCEEEEEEC-CCEEEEEEECCCCEEEEEEE-CCCCCCEEEEECCCCCE
T ss_conf             9777999489899999938-94789999089976987641-28998678998789987

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.41  E-value=5.2e-09  Score=72.63  Aligned_cols=116  Identities=15%  Similarity=0.123  Sum_probs=59.8

Q ss_pred             EEECCCCEEEEEECCCCCEEEEECCCCCEEEEECEEEECCCCCCCCCCCCCCCCCCCCEEEEEEECCCCEEEEEEC----
Q ss_conf             9805898299998079919999725641356511165215778832110113698975559999029986999968----
Q 001415          365 DFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYS----  440 (1082)
Q Consensus       365 ~fspdg~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~i~~spdg~~las~~~----  440 (1082)
                      .|++++.+ +. -..+|.|.+||+.+++.....     +.           ..-..-.+....||||+++++....    
T Consensus        23 ~W~~~~~~-~~-~~~~g~i~~~~~~~~~~~~l~-----~~-----------~~~~~~~~~~~~~SpD~~~vl~~~~~~~~   84 (465)
T d1xfda1          23 KWISDTEF-IY-REQKGTVRLWNVETNTSTVLI-----EG-----------KKIESLRAIRYEISPDREYALFSYNVEPI   84 (465)
T ss_dssp             CBSSSSCB-CC-CCSSSCEEEBCGGGCCCEEEE-----CT-----------TTTTTTTCSEEEECTTSSEEEEEESCCCC
T ss_pred             EEECCCCE-EE-EECCCCEEEEECCCCCEEEEE-----CC-----------CCCCCCCCCEEEECCCCCEEEEEECCCCE
T ss_conf             89179848-99-928996999987899889987-----27-----------64444553213898988869999845100


Q ss_pred             -----CCEEEEEECCCCCEEEEEEEEECCCCCEEEEEECCCCCCEEEEEEECCCCEEEEECCCCCEE
Q ss_conf             -----98199999447931347798615666744999617999069999717996999984489546
Q 001415          441 -----RHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQ  502 (1082)
Q Consensus       441 -----d~~i~iwd~~~~~~~~~~~~~~~h~~~V~~i~fs~dg~~~~l~s~s~d~~i~iWd~~~~~~~  502 (1082)
                           .+.+.++|+.++.... +.........+....|||||+.  +|-.. ++.|.+.+...+..+
T Consensus        85 ~r~s~~~~~~i~d~~~~~~~~-l~~~~~~~~~l~~~~wSPDG~~--iafv~-~~nl~~~~~~~~~~~  147 (465)
T d1xfda1          85 YQHSYTGYYVLSKIPHGDPQS-LDPPEVSNAKLQYAGWGPKGQQ--LIFIF-ENNIYYCAHVGKQAI  147 (465)
T ss_dssp             SSSCCCSEEEEEESSSCCCEE-CCCTTCCSCCCSBCCBCSSTTC--EEEEE-TTEEEEESSSSSCCE
T ss_pred             EEEECCCCEEEEECCCCCEEE-CCCCCCCCCCCCEEEECCCCCE--EEEEE-CCEEEEEECCCCCEE
T ss_conf             476033528999856884564-1576677643110024267856--99996-132999954899658

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.38  E-value=3.3e-09  Score=74.00  Aligned_cols=17  Identities=35%  Similarity=0.669  Sum_probs=7.5

Q ss_pred             CEEEEEEECCCCEEEEE
Q ss_conf             55599990299869999
Q 001415          422 SVNRVIWSPDGSLFGVA  438 (1082)
Q Consensus       422 ~V~~i~~spdg~~las~  438 (1082)
                      .+...+|||||++||..
T Consensus        40 ~~~sP~wSPDGk~IAf~   56 (269)
T d2hqsa1          40 PLMSPAWSPDGSKLAYV   56 (269)
T ss_dssp             CEEEEEECTTSSEEEEE
T ss_pred             CEEEEEECCCCCEEEEE
T ss_conf             42603887899989999

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=99.36  E-value=6.9e-09  Score=71.77  Aligned_cols=110  Identities=12%  Similarity=0.115  Sum_probs=39.5

Q ss_pred             CCEEEEECCCCEEEEEE-CCEEEEEECCCCEEEEEECCCCCCEEEEEEECCCCCEEEEEECCCCEEEEECCCCEE-EEEE
Q ss_conf             01899604998389940-990899866898057897799998059999059995799974799589996203312-1352
Q 001415          789 VPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEV-KSKL  866 (1082)
Q Consensus       789 i~~i~~s~dg~~l~~~s-dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~sp~~~~~lasg~~dg~I~iwd~~~~~~-~~~l  866 (1082)
                      +..++++|||+++++.. +++|..|+....  ...+......+.+++|++ +++++++...++.+..++...... ...+
T Consensus        30 ~e~iAv~pdG~l~vt~~~~~~I~~i~p~g~--~~~~~~~~~~~~gla~~~-dG~l~v~~~~~~~~~~~~~~~~~~~~~~~  106 (302)
T d2p4oa1          30 LENLASAPDGTIFVTNHEVGEIVSITPDGN--QQIHATVEGKVSGLAFTS-NGDLVATGWNADSIPVVSLVKSDGTVETL  106 (302)
T ss_dssp             EEEEEECTTSCEEEEETTTTEEEEECTTCC--EEEEEECSSEEEEEEECT-TSCEEEEEECTTSCEEEEEECTTSCEEEE
T ss_pred             CCCEEECCCCCEEEEECCCCEEEEEECCCC--EEEEECCCCCCCEEEECC-CCCEEEEECCCCEEEEEEECCCCCCEEEC
T ss_conf             478779999889999688998999908998--899971799853689867-78869983289537888710111101210


Q ss_pred             --CCCCCCEEEEEEECCCCEEEEEECCCCEEEEECCC
Q ss_conf             --23555789999957999899992899499999578
Q 001415          867 --KGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDG  901 (1082)
Q Consensus       867 --~~h~~~V~~i~~s~d~~~l~s~s~Dg~I~iwd~~~  901 (1082)
                        .......+.+++.++++++++.+.++.+..++...
T Consensus       107 ~~~~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~  143 (302)
T d2p4oa1         107 LTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQ  143 (302)
T ss_dssp             EECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTT
T ss_pred             CCCCCCCCCCEEEECCCCCEEEECCCCCCCEEEECCC
T ss_conf             2357863221667715797875035655410242168

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.28  E-value=3.1e-08  Score=67.33  Aligned_cols=68  Identities=7%  Similarity=-0.033  Sum_probs=26.0

Q ss_pred             CEEEECCCCCEEEE-EECCEEEEEECCCCCEEEEECCCCCCCCEEEEEECCCCCEEEEEECCCCEEEEECC
Q ss_conf             38998178849999-93682999972676210000027999654489986899669996468819998469
Q 001415          924 TRVQFHQDQIHFLV-VHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAA  993 (1082)
Q Consensus       924 ~~i~fspdg~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~h~~~i~~i~~s~dg~~l~t~s~dg~i~iwd~~  993 (1082)
                      ..+++.+++..+++ ..++.+..++.+.........  ........+++.++|.++++....+.|..++..
T Consensus       143 ~~i~~~~~g~~~v~~~~~~~i~~~d~~~~~~~~~~~--~~~~~p~gi~~d~~g~l~vsd~~~~~i~~~~~~  211 (260)
T d1rwia_         143 DGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLPF--TDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAG  211 (260)
T ss_dssp             CEEEECTTCCEEEEEGGGTEEEEECTTTCCEEECCC--SSCCSEEEEEECTTCCEEEEETTTTEEEEECTT
T ss_pred             CEEEECCCCCEEEECCCCCCCCCCCCCCCEEEEEEC--CCCCCCCCCEEEEEEEEEEEECCCCEEEEEECC
T ss_conf             205454899886410256433222343100122210--114787631231000134321489989999699

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.26  E-value=5.9e-08  Score=65.44  Aligned_cols=117  Identities=11%  Similarity=0.164  Sum_probs=68.4

Q ss_pred             CCCCEEEEEECCCCEEEEEE--------CCCCCEEEEECCCCCEEEEECEEEECCCCCCCCCCCCCCCCCCCCEEEEEEE
Q ss_conf             99932889805898299998--------0799199997256413565111652157788321101136989755599990
Q 001415          358 GSSPMSMDFHPVQQTLLLVG--------TNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWS  429 (1082)
Q Consensus       358 ~~~v~~~~fspdg~~llasg--------s~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~i~~s  429 (1082)
                      .-.+....|||||+++++..        +..+.+.++|+.++......                 ........+....||
T Consensus        60 ~~~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~~~~~l~-----------------~~~~~~~~l~~~~wS  122 (465)
T d1xfda1          60 SLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLD-----------------PPEVSNAKLQYAGWG  122 (465)
T ss_dssp             TTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECC-----------------CTTCCSCCCSBCCBC
T ss_pred             CCCCCEEEECCCCCEEEEEECCCCEEEEECCCCEEEEECCCCCEEECC-----------------CCCCCCCCCCEEEEC
T ss_conf             455321389898886999984510047603352899985688456415-----------------766776431100242


Q ss_pred             CCCCEEEEEECCCEEEEEECCCCCEEEEEEEEECCCCCE-----------------EEEEECCCCCCEEEEEEE-CCCCE
Q ss_conf             299869999689819999944793134779861566674-----------------499961799906999971-79969
Q 001415          430 PDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGV-----------------NDIAFSHPNKQLCVITCG-DDKTI  491 (1082)
Q Consensus       430 pdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~V-----------------~~i~fs~dg~~~~l~s~s-~d~~i  491 (1082)
                      |||+.||... ++.+.+.+..++...+.  +..+..+.|                 ..+-|||||+.  |+... .+..+
T Consensus       123 PDG~~iafv~-~~nl~~~~~~~~~~~~l--t~~g~~~~i~nG~~d~vyeee~~~~~~a~~WSPDgk~--iaf~~~D~s~V  197 (465)
T d1xfda1         123 PKGQQLIFIF-ENNIYYCAHVGKQAIRV--VSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTR--LAYAAINDSRV  197 (465)
T ss_dssp             SSTTCEEEEE-TTEEEEESSSSSCCEEE--ECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSE--EEEEEEECTTS
T ss_pred             CCCCEEEEEE-CCEEEEEECCCCCEEEE--ECCCCCCEEECCCCCHHHHHHHCCCCCEEEECCCCCE--EEEEEECCCCC
T ss_conf             6785699996-13299995489965897--1126766044366431001230366434897798986--89999536666


Q ss_pred             EEEEC
Q ss_conf             99984
Q 001415          492 KVWDA  496 (1082)
Q Consensus       492 ~iWd~  496 (1082)
                      ..+.+
T Consensus       198 ~~~~~  202 (465)
T d1xfda1         198 PIMEL  202 (465)
T ss_dssp             CEEEE
T ss_pred             CEEEC
T ss_conf             14641

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.23  E-value=8.2e-08  Score=64.45  Aligned_cols=12  Identities=8%  Similarity=0.268  Sum_probs=4.6

Q ss_pred             EEEECCCCCEEE
Q ss_conf             899868996699
Q 001415          968 HATFSCDSQLVY  979 (1082)
Q Consensus       968 ~i~~s~dg~~l~  979 (1082)
                      ...|||||++|+
T Consensus       218 ~p~~SPDG~~i~  229 (269)
T d2hqsa1         218 TPSLAPNGTMVI  229 (269)
T ss_dssp             EEEECTTSSEEE
T ss_pred             CEEECCCCCEEE
T ss_conf             558989999999

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.20  E-value=5.3e-08  Score=65.77  Aligned_cols=11  Identities=9%  Similarity=0.262  Sum_probs=4.5

Q ss_pred             CEEEEEECCCC
Q ss_conf             32889805898
Q 001415          361 PMSMDFHPVQQ  371 (1082)
Q Consensus       361 v~~~~fspdg~  371 (1082)
                      ...++++++|.
T Consensus        16 P~~vavd~dG~   26 (260)
T d1rwia_          16 PSGVAVDSAGN   26 (260)
T ss_dssp             EEEEEECTTCC
T ss_pred             CCEEEECCCCC
T ss_conf             78899969999

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=99.19  E-value=1.4e-07  Score=62.97  Aligned_cols=104  Identities=17%  Similarity=0.139  Sum_probs=43.7

Q ss_pred             CCCEEEEEECCCCEEEEEECC-------CCCEEEEECCCCCEEEEECEEEECCCCCCCCCCCCCCCCCCCCEEEEEEECC
Q ss_conf             993288980589829999807-------9919999725641356511165215778832110113698975559999029
Q 001415          359 SSPMSMDFHPVQQTLLLVGTN-------VGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPD  431 (1082)
Q Consensus       359 ~~v~~~~fspdg~~llasgs~-------dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~i~~spd  431 (1082)
                      .....++|.|+|+ ++++...       ++.|..||..++.......-               ......+....++|+++
T Consensus        18 ~g~EGpa~d~dG~-ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~---------------~~~~~~g~P~Gl~~~~d   81 (314)
T d1pjxa_          18 PGAEGPVFDKNGD-FYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKP---------------EVNGYGGIPAGCQCDRD   81 (314)
T ss_dssp             TTCEEEEECTTSC-EEEEETTCEETTEECCEEEEECTTTCCEEEEECC---------------EETTEECCEEEEEECSS
T ss_pred             CCCEEEEEECCCC-EEEEECCCCCCCCCCCEEEEEECCCCCEEEEECC---------------CCCCCCCCCEEEEEECC
T ss_conf             8971739969999-9999875402345299999998999959999777---------------65567885306999079


Q ss_pred             CCEEEEEECCCEEEEEECCCCCEEEEEEEEECC-CCCEEEEEECCCCC
Q ss_conf             986999968981999994479313477986156-66744999617999
Q 001415          432 GSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAH-VGGVNDIAFSHPNK  478 (1082)
Q Consensus       432 g~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h-~~~V~~i~fs~dg~  478 (1082)
                      +..+.++.....+...+..+...........+. -...+.+++.++|.
T Consensus        82 g~~l~vad~~~~i~~~~~~g~~~~~~~~~~~g~~~~~pndl~~d~~G~  129 (314)
T d1pjxa_          82 ANQLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGN  129 (314)
T ss_dssp             SSEEEEEETTTEEEEEETTSCEEECCSBCTTSCBCBCCCEEEECTTSC
T ss_pred             CCEEEEEECCCEEEEEECCCCEEEEEECCCCCCCCCCCCEEEECCCCC
T ss_conf             998999977983999947774799973343245457872789888998

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=99.14  E-value=2.2e-07  Score=61.47  Aligned_cols=49  Identities=18%  Similarity=0.359  Sum_probs=16.0

Q ss_pred             EEEECCCCCEEEEEECCCCEEEEECCCCEEEEEECCCCCCEEEEEEECCC
Q ss_conf             99905999579997479958999620331213522355578999995799
Q 001415          833 LAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHAL  882 (1082)
Q Consensus       833 i~~sp~~~~~lasg~~dg~I~iwd~~~~~~~~~l~~h~~~V~~i~~s~d~  882 (1082)
                      +++.. ++++.++....+.|.+|+...++.+..+.......++++|.+|+
T Consensus       231 iavD~-~GnlyVa~~~~g~I~~~dp~~g~~~~~i~~p~~~~t~~afg~d~  279 (314)
T d1pjxa_         231 MDFDE-DNNLLVANWGSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQT  279 (314)
T ss_dssp             EEEBT-TCCEEEEEETTTEEEEECTTCBSCSEEEECSSSCEEEEEECTTS
T ss_pred             EEEEC-CCCEEEEECCCCEEEEEECCCCEEEEEEECCCCCEEEEEEECCC
T ss_conf             57834-78579998279999999699997999997999987899992898

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.11  E-value=2.9e-07  Score=60.66  Aligned_cols=245  Identities=11%  Similarity=0.114  Sum_probs=0.0

Q ss_pred             CCCCEEEEECCCCEEEEEEC-CEEEEEECCCCEEEEEE------CCCCCCEEEEEEECCCCCEEEEEECCC-CEEEEECC
Q ss_conf             88018996049983899409-90899866898057897------799998059999059995799974799-58999620
Q 001415          787 EAVPCFALSKNDSYVMSASG-GKISLFNMMTFKTMATF------MPPPPAATFLAFHPQDNNIIAIGMDDS-SIQIYNVR  858 (1082)
Q Consensus       787 ~~i~~i~~s~dg~~l~~~sd-g~i~iwd~~~~~~~~~~------~~~~~~v~~i~~sp~~~~~lasg~~dg-~I~iwd~~  858 (1082)
                      .....++++++|+++++-.. ..|++||.+ ++.+..+      .+.......+++..+.+..+++..... .|..++..
T Consensus        23 ~~P~gvavd~dg~i~VaD~~n~rI~v~d~~-G~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  101 (279)
T d1q7fa_          23 TEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQY  101 (279)
T ss_dssp             SCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECTT
T ss_pred             CCCCEEEECCCCCEEEEECCCCEEEEEECC-CCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCC
T ss_conf             890079994999899997998989999699-9999981665788664226630001234455200004775310000025


Q ss_pred             CCEEEEEECCCCCCEEEEEEECCCCEEEEEECCCCEEEEECCCCCCCCCEEEECCCCCCCCCCCCCEEEECCCCCEEEE-
Q ss_conf             3312135223555789999957999899992899499999578631123021036899898899938998178849999-
Q 001415          859 VDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-  937 (1082)
Q Consensus       859 ~~~~~~~l~~h~~~V~~i~~s~d~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~i~fspdg~~l~~-  937 (1082)
                      .......-.........+++.+++.++++....+.+.+++.+.     ............  .....+++.+++..+++ 
T Consensus       102 g~~~~~~~~~~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~~g-----~~~~~~g~~~~~--~~~~~i~~d~~g~i~v~d  174 (279)
T d1q7fa_         102 GQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNG-----NVLHKFGCSKHL--EFPNGVVVNDKQEIFISD  174 (279)
T ss_dssp             SCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTS-----CEEEEEECTTTC--SSEEEEEECSSSEEEEEE
T ss_pred             CCCEEECCCCCCCCCCEECCCCCCCEEEEEECCCEEEEECCCC-----CEEECCCCCCCC--CCCCEEEECCCEEEEEEE
T ss_conf             6302403888642542000014784799963263256762687-----501002200102--566243201200178620


Q ss_pred             EECCEEEEEECCCCCEEEEECCCCCCCCEEEEEECCCCCEEEEEECCCC-EEEEECCCCEEEEEECCCEECCCCCCCCCC
Q ss_conf             9368299997267621000002799965448998689966999646881-999846996034652787003788889871
Q 001415          938 VHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDAT-VCVFSAANLKLRCRINPSAYLPAGVSSSNV 1016 (1082)
Q Consensus       938 ~~d~~i~iwd~~~~~~~~~~~~~~h~~~i~~i~~s~dg~~l~t~s~dg~-i~iwd~~~~~~~~~~~~~~~~~~gh~~~~v 1016 (1082)
                      ...+.|.+|+. +++.+..+...+.......+++.++|..+++-..++. |.+|+ .+|+.+..+.       .. ....
T Consensus       175 ~~~~~V~~~d~-~G~~~~~~g~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~-~~G~~~~~~~-------~~-~~~~  244 (279)
T d1q7fa_         175 NRAHCVKVFNY-EGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFT-QDGQLISALE-------SK-VKHA  244 (279)
T ss_dssp             GGGTEEEEEET-TCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEEC-TTSCEEEEEE-------ES-SCCS
T ss_pred             CCCCCEEEEEC-CCCEEEEECCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEC-CCCCEEEEEE-------CC-CCCC
T ss_conf             13551002304-7944453011321148762323147869999789980899999-9999999996-------88-8889


Q ss_pred             EEEEEEEECCCCCEEEEEECCCCEEEECCCCCCCC
Q ss_conf             01699970899976999951892999914788773
Q 001415         1017 HPLVIAAHPQEPNEFALGLSDGGVHVFEPLESEGK 1051 (1082)
Q Consensus      1017 ~~~~~~~~~~d~~~l~s~~~dg~i~vW~~~~~~~~ 1051 (1082)
                      .+..++..+ ||.++++. .++.|++|+......+
T Consensus       245 ~p~~vav~~-dG~l~V~~-~n~~v~~fr~~~~~~~  277 (279)
T d1q7fa_         245 QCFDVALMD-DGSVVLAS-KDYRLYIYRYVQLAPV  277 (279)
T ss_dssp             CEEEEEEET-TTEEEEEE-TTTEEEEEECSCCCCT
T ss_pred             CEEEEEEEC-CCCEEEEE-CCCEEEEEEEEEECCC
T ss_conf             883799908-99199991-8996999872203578

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=99.06  E-value=4.8e-07  Score=59.22  Aligned_cols=104  Identities=16%  Similarity=0.124  Sum_probs=50.8

Q ss_pred             CCCCEEEEEECCCCEEEEEECCCCCEEEEECCCCCEEEEECEEEECCCCCCCCCCCCCCCCCCCCEEEEEEECCCCEEEE
Q ss_conf             99932889805898299998079919999725641356511165215778832110113698975559999029986999
Q 001415          358 GSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGV  437 (1082)
Q Consensus       358 ~~~v~~~~fspdg~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~i~~spdg~~las  437 (1082)
                      ......++|.++|+ |+++....+.|..|+..++.....                   ..........+++++||+++++
T Consensus        39 ~~~lEG~~~D~~G~-Ly~~D~~~g~I~ri~p~g~~~~~~-------------------~~~~~~~p~gla~~~dG~l~va   98 (319)
T d2dg1a1          39 GLQLEGLNFDRQGQ-LFLLDVFEGNIFKINPETKEIKRP-------------------FVSHKANPAAIKIHKDGRLFVC   98 (319)
T ss_dssp             CCCEEEEEECTTSC-EEEEETTTCEEEEECTTTCCEEEE-------------------EECSSSSEEEEEECTTSCEEEE
T ss_pred             CCCCEECEECCCCC-EEEEECCCCEEEEEECCCCEEEEE-------------------EECCCCCEEEEEECCCCCEEEE
T ss_conf             86747078999999-999977999999998999959999-------------------9489987038999999999999


Q ss_pred             EECC----CEEEEEECCCCCEEEEEEEEECCCCCEEEEEECCCCCCEEEEE
Q ss_conf             9689----8199999447931347798615666744999617999069999
Q 001415          438 AYSR----HIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVIT  484 (1082)
Q Consensus       438 ~~~d----~~i~iwd~~~~~~~~~~~~~~~h~~~V~~i~fs~dg~~~~l~s  484 (1082)
                      ...+    +.+...+..+..... ...-..-......+++.++|.  +.++
T Consensus        99 ~~~~~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~~nd~~~d~~G~--l~vt  146 (319)
T d2dg1a1          99 YLGDFKSTGGIFAATENGDNLQD-IIEDLSTAYCIDDMVFDSKGG--FYFT  146 (319)
T ss_dssp             ECTTSSSCCEEEEECTTSCSCEE-EECSSSSCCCEEEEEECTTSC--EEEE
T ss_pred             ECCCCCCCEEEEEECCCCCEEEE-ECCCCCCCCCCCCEEEEECCC--EEEC
T ss_conf             56897311049987389963644-426777555875226773065--3200

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.88  E-value=2.2e-06  Score=54.71  Aligned_cols=106  Identities=12%  Similarity=0.068  Sum_probs=50.3

Q ss_pred             CEEEECCCCCEEEEE--ECCEEEEEECCCCC-EEEE-----ECCCCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCC
Q ss_conf             389981788499999--36829999726762-1000-----002799965448998689966999646881999846996
Q 001415          924 TRVQFHQDQIHFLVV--HETQLAIFETTKLE-CVKQ-----WVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANL  995 (1082)
Q Consensus       924 ~~i~fspdg~~l~~~--~d~~i~iwd~~~~~-~~~~-----~~~~~h~~~i~~i~~s~dg~~l~t~s~dg~i~iwd~~~~  995 (1082)
                      ..++|+||++.|.++  ..+.|..|+++... ....     ............+++..+|.+.++....+.|.+|+- .|
T Consensus       180 nGia~s~dg~~lyvad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~~g~V~~~~p-~G  258 (319)
T d2dg1a1         180 NGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RG  258 (319)
T ss_dssp             EEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECT-TS
T ss_pred             EEEEECCCCCEEEEECCCCCCEEEEEECCCCCEECCCCCEEEECCCCCCCEEEEEECCCCCEEEEECCCCEEEEECC-CC
T ss_conf             00010122212787404689147999769983620246333312577641036417389999999848998999979-99


Q ss_pred             EEEEEECCCEECCCCCCCCCCEEEEEEEECCCCCEEEEEE
Q ss_conf             0346527870037888898710169997089997699995
Q 001415          996 KLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGL 1035 (1082)
Q Consensus       996 ~~~~~~~~~~~~~~gh~~~~v~~~~~~~~~~d~~~l~s~~ 1035 (1082)
                      +.+.++.    +|....+....+.++.|.+. ...+++..
T Consensus       259 ~~l~~i~----~P~~~~~~~~~~~~~~~~~~-~~~~~~t~  293 (319)
T d2dg1a1         259 YPIGQIL----IPGRDEGHMLRSTHPQFIPG-TNQLIICS  293 (319)
T ss_dssp             CEEEEEE----CTTGGGTCSCBCCEEEECTT-SCEEEEEE
T ss_pred             CEEEEEE----CCCCCCCCCCEEEEEEEECC-CCEEEEEC
T ss_conf             5988996----88757786750466778079-98899985

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.78  E-value=4.5e-06  Score=52.60  Aligned_cols=92  Identities=13%  Similarity=0.132  Sum_probs=45.2

Q ss_pred             EECC--CCEEEEEECCCCCEEEEECCCCCEEEEECEEEECCCCCCCCCCCCCCCCCCCCEEEEEEECCCCEEEEEEC-C-
Q ss_conf             8058--98299998079919999725641356511165215778832110113698975559999029986999968-9-
Q 001415          366 FHPV--QQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYS-R-  441 (1082)
Q Consensus       366 fspd--g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~i~~spdg~~las~~~-d-  441 (1082)
                      .|||  |++++++.  ++.|.+.|+.+++...                    +..+.+.+...+|||||++||.... + 
T Consensus         6 ~sPdi~G~~v~f~~--~~dl~~~d~~~g~~~~--------------------Lt~~~~~~~~p~~SPDG~~iaf~~~~~~   63 (281)
T d1k32a2           6 LNPDIHGDRIIFVC--CDDLWEHDLKSGSTRK--------------------IVSNLGVINNARFFPDGRKIAIRVMRGS   63 (281)
T ss_dssp             EEEEEETTEEEEEE--TTEEEEEETTTCCEEE--------------------EECSSSEEEEEEECTTSSEEEEEEEEST
T ss_pred             CCCCCCCCEEEEEE--CCCEEEEECCCCCEEE--------------------EECCCCCCCCEEECCCCCEEEEEEEECC
T ss_conf             58887999999990--9968999899998799--------------------7669985267798789998999986289


Q ss_pred             ----CEEEEEECCCCCEEEEEE---EEECCCCCEEEEEECCCCCC
Q ss_conf             ----819999944793134779---86156667449996179990
Q 001415          442 ----HIVQIYSYHGGDEVRQHL---EIDAHVGGVNDIAFSHPNKQ  479 (1082)
Q Consensus       442 ----~~i~iwd~~~~~~~~~~~---~~~~h~~~V~~i~fs~dg~~  479 (1082)
                          ..|.+++..+++......   .............|+|+|+.
T Consensus        64 ~~~~~~i~~~~~~~g~~~~lt~~~~~~~~~~~~~~~~~~spdg~~  108 (281)
T d1k32a2          64 SLNTADLYFYNGENGEIKRITYFSGKSTGRRMFTDVAGFDPDGNL  108 (281)
T ss_dssp             TCCEEEEEEEETTTTEEEECCCCCEEEETTEECSEEEEECTTCCE
T ss_pred             CCCCEEEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCE
T ss_conf             877228999982599528864168875476444343102798877

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.65  E-value=1.1e-05  Score=49.95  Aligned_cols=48  Identities=17%  Similarity=0.251  Sum_probs=33.9

Q ss_pred             EEECC--CCEEEEEECCCEEEEEECCCCCEEEEEEEEECCCCCEEEEEECCCCCC
Q ss_conf             99029--986999968981999994479313477986156667449996179990
Q 001415          427 IWSPD--GSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQ  479 (1082)
Q Consensus       427 ~~spd--g~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~V~~i~fs~dg~~  479 (1082)
                      ..|||  |+.+|..+ ++.|.+.++.+++..    .+..+.+.+...+|||||+.
T Consensus         5 ~~sPdi~G~~v~f~~-~~dl~~~d~~~g~~~----~Lt~~~~~~~~p~~SPDG~~   54 (281)
T d1k32a2           5 LLNPDIHGDRIIFVC-CDDLWEHDLKSGSTR----KIVSNLGVINNARFFPDGRK   54 (281)
T ss_dssp             CEEEEEETTEEEEEE-TTEEEEEETTTCCEE----EEECSSSEEEEEEECTTSSE
T ss_pred             CCCCCCCCCEEEEEE-CCCEEEEECCCCCEE----EEECCCCCCCCEEECCCCCE
T ss_conf             258887999999990-996899989999879----97669985267798789998

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.33  E-value=7e-05  Score=44.42  Aligned_cols=230  Identities=12%  Similarity=0.039  Sum_probs=95.8

Q ss_pred             EEEEECCCCEEEEEECCCCCEEEEECCCCCEEEEECEEEECCCCCCCCCCCCCCCCCCCCEEEEEEECCCCEEEEEECCC
Q ss_conf             88980589829999807991999972564135651116521577883211011369897555999902998699996898
Q 001415          363 SMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRH  442 (1082)
Q Consensus       363 ~~~fspdg~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~i~~spdg~~las~~~d~  442 (1082)
                      +..|.+....|+.+--..+.|..||..+++....                     .....+.++++.++|.+++++ .+ 
T Consensus        22 gp~wd~~~~~l~wvDi~~~~I~r~d~~~g~~~~~---------------------~~~~~~~~i~~~~dg~l~va~-~~-   78 (295)
T d2ghsa1          22 GPTFDPASGTAWWFNILERELHELHLASGRKTVH---------------------ALPFMGSALAKISDSKQLIAS-DD-   78 (295)
T ss_dssp             EEEEETTTTEEEEEEGGGTEEEEEETTTTEEEEE---------------------ECSSCEEEEEEEETTEEEEEE-TT-
T ss_pred             CCEEECCCCEEEEEECCCCEEEEEECCCCEEEEE---------------------ECCCCCEEEEEECCCCEEEEE-EC-
T ss_conf             8759899999999987899999998998959999---------------------899981798996599889997-37-


Q ss_pred             EEEEEECCCCCEEEEEEEEECC--CCCEEEEEECCCCCCEEEEEEEC----CCCEEEEECCCCCEEEEEECCCCCEEEEE
Q ss_conf             1999994479313477986156--66744999617999069999717----99699998448954699406886748983
Q 001415          443 IVQIYSYHGGDEVRQHLEIDAH--VGGVNDIAFSHPNKQLCVITCGD----DKTIKVWDATNGAKQYIFEGHEAPVYSVC  516 (1082)
Q Consensus       443 ~i~iwd~~~~~~~~~~~~~~~h--~~~V~~i~fs~dg~~~~l~s~s~----d~~i~iWd~~~~~~~~~~~~h~~~v~~i~  516 (1082)
                      .+.++|..+++... +......  ...++.+.+.++|.  +.++...    .+.-.+|.+..++....... ...-..++
T Consensus        79 gl~~~d~~tg~~~~-l~~~~~~~~~~~~nd~~vd~~G~--iw~~~~~~~~~~~~g~l~~~~~g~~~~~~~~-~~~~Ng~~  154 (295)
T d2ghsa1          79 GLFLRDTATGVLTL-HAELESDLPGNRSNDGRMHPSGA--LWIGTMGRKAETGAGSIYHVAKGKVTKLFAD-ISIPNSIC  154 (295)
T ss_dssp             EEEEEETTTCCEEE-EECSSTTCTTEEEEEEEECTTSC--EEEEEEETTCCTTCEEEEEEETTEEEEEEEE-ESSEEEEE
T ss_pred             CCEEEECCCCEEEE-EEEEECCCCCCCCEEEEECCCCC--EEEEECCCCCCCCCEEEEEECCCCEEEEEEC-CCCCCEEE
T ss_conf             63895046451357-86640478766101357979999--9887426431333305766229968998650-68764024


Q ss_pred             EEECCCCEEEEEECCCCCEEEEECCCCCCEEEECCCCCCEEEEEECCCCCEEEECCCCCCEEEEEECCCCCEEEEEECCC
Q ss_conf             11048943999964899189994688993134238997157879866997366231146306999418999799970798
Q 001415          517 PHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDF  596 (1082)
Q Consensus       517 ~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg  596 (1082)
                      |+++.+ .++++-+..+.|..++++.......-   .. ...+.+.         ...+....++++.+|+..++.-..+
T Consensus       155 ~s~d~~-~l~~~dt~~~~I~~~~~d~~~~~~~~---~~-~~~~~~~---------~~~g~pdG~~vD~~GnlWva~~~~g  220 (295)
T d2ghsa1         155 FSPDGT-TGYFVDTKVNRLMRVPLDARTGLPTG---KA-EVFIDST---------GIKGGMDGSVCDAEGHIWNARWGEG  220 (295)
T ss_dssp             ECTTSC-EEEEEETTTCEEEEEEBCTTTCCBSS---CC-EEEEECT---------TSSSEEEEEEECTTSCEEEEEETTT
T ss_pred             ECCCCC-EEEEEECCCCEEEEEEECCCCCCCCC---CE-EEEECCC---------CCCCCCCCEEECCCCCEEEEEECCC
T ss_conf             658776-68985156632467645355553245---35-7884167---------5556663267869999895320788


Q ss_pred             EEEEEECCCCCEEEEEECCCCCCCCCEEEEC-CCCCEEEEE
Q ss_conf             2999987885137997059999996808986-999899999
Q 001415          597 SIKFWDMDSVQLLTSIDADGGLPASPRIRFN-KDGCLLAVS  636 (1082)
Q Consensus       597 ~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s-~dg~~l~~~  636 (1082)
                      .|..|+. .++.+..+.....  .+++++|- +|.+.|++.
T Consensus       221 ~V~~~dp-~G~~~~~i~lP~~--~~T~~~FGG~d~~~LyvT  258 (295)
T d2ghsa1         221 AVDRYDT-DGNHIARYEVPGK--QTTCPAFIGPDASRLLVT  258 (295)
T ss_dssp             EEEEECT-TCCEEEEEECSCS--BEEEEEEESTTSCEEEEE
T ss_pred             CEEEECC-CCCEEEEECCCCC--CEEEEEEECCCCCEEEEE
T ss_conf             4688569-9928668638998--527989828999999999

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.26  E-value=9.9e-05  Score=43.40  Aligned_cols=203  Identities=8%  Similarity=0.044  Sum_probs=85.9

Q ss_pred             CEEEEEECCCCEEEEEECCCCCCEEEEEEECCCCCEEEEEECCCCEEEEECCCCEEEEEEC--C--CCCCEEEEEEECCC
Q ss_conf             9089986689805789779999805999905999579997479958999620331213522--3--55578999995799
Q 001415          807 GKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLK--G--HSKRITGLAFSHAL  882 (1082)
Q Consensus       807 g~i~iwd~~~~~~~~~~~~~~~~v~~i~~sp~~~~~lasg~~dg~I~iwd~~~~~~~~~l~--~--h~~~V~~i~~s~d~  882 (1082)
                      +.|..||..+++.. .+. ....+.++++.+ ++.++++ +.+ .+.++|..+++......  .  ....++.+.+.++|
T Consensus        40 ~~I~r~d~~~g~~~-~~~-~~~~~~~i~~~~-dg~l~va-~~~-gl~~~d~~tg~~~~l~~~~~~~~~~~~nd~~vd~~G  114 (295)
T d2ghsa1          40 RELHELHLASGRKT-VHA-LPFMGSALAKIS-DSKQLIA-SDD-GLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSG  114 (295)
T ss_dssp             TEEEEEETTTTEEE-EEE-CSSCEEEEEEEE-TTEEEEE-ETT-EEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTS
T ss_pred             CEEEEEECCCCEEE-EEE-CCCCCEEEEEEC-CCCEEEE-EEC-CCEEEECCCCEEEEEEEEECCCCCCCCEEEEECCCC
T ss_conf             99999989989599-998-999817989965-9988999-737-638950464513578664047876610135797999


Q ss_pred             CEEEEEECC----CCEEEEECCCCCCCCCEEEECCCCCCCCCCCCCEEEECCCCCEEEEE--ECCEEEEEECCCCC----
Q ss_conf             989999289----94999995786311230210368998988999389981788499999--36829999726762----
Q 001415          883 NVLVSSGAD----SQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV--HETQLAIFETTKLE----  952 (1082)
Q Consensus       883 ~~l~s~s~D----g~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~i~fspdg~~l~~~--~d~~i~iwd~~~~~----  952 (1082)
                      .+.++...+    +.-.+|.+..++...  .....       .....++|+++++.+..+  ..+.|..|+++...    
T Consensus       115 ~iw~~~~~~~~~~~~g~l~~~~~g~~~~--~~~~~-------~~~Ng~~~s~d~~~l~~~dt~~~~I~~~~~d~~~~~~~  185 (295)
T d2ghsa1         115 ALWIGTMGRKAETGAGSIYHVAKGKVTK--LFADI-------SIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPT  185 (295)
T ss_dssp             CEEEEEEETTCCTTCEEEEEEETTEEEE--EEEEE-------SSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBS
T ss_pred             CEEEEECCCCCCCCCEEEEEECCCCEEE--EEECC-------CCCCEEEECCCCCEEEEEECCCCEEEEEEECCCCCCCC
T ss_conf             9988742643133330576622996899--86506-------87640246587766898515663246764535555324


Q ss_pred             --EEEEECCCCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCEEEEEECCCEECCCCCCCCCCEEEEEEEECCCCCE
Q ss_conf             --100000279996544899868996699964688199984699603465278700378888987101699970899976
Q 001415          953 --CVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNE 1030 (1082)
Q Consensus       953 --~~~~~~~~~h~~~i~~i~~s~dg~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~~~~~~~d~~~ 1030 (1082)
                        ........+.......+++..+|.+.++....+.|..|+ ..++++..+.    +|.      ..+++++|-..|.+.
T Consensus       186 ~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~~~g~V~~~d-p~G~~~~~i~----lP~------~~~T~~~FGG~d~~~  254 (295)
T d2ghsa1         186 GKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYD-TDGNHIARYE----VPG------KQTTCPAFIGPDASR  254 (295)
T ss_dssp             SCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEEC-TTCCEEEEEE----CSC------SBEEEEEEESTTSCE
T ss_pred             CCEEEEECCCCCCCCCCCEEECCCCCEEEEEECCCCEEEEC-CCCCEEEEEC----CCC------CCEEEEEEECCCCCE
T ss_conf             53578841675556663267869999895320788468856-9992866863----899------852798982899999


Q ss_pred             EEEE
Q ss_conf             9999
Q 001415         1031 FALG 1034 (1082)
Q Consensus      1031 l~s~ 1034 (1082)
                      |.+.
T Consensus       255 LyvT  258 (295)
T d2ghsa1         255 LLVT  258 (295)
T ss_dssp             EEEE
T ss_pred             EEEE
T ss_conf             9999

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=97.98  E-value=0.00034  Score=39.74  Aligned_cols=117  Identities=11%  Similarity=0.061  Sum_probs=66.2

Q ss_pred             CCCCCEEEEEEECCCCEEEEECCCCCEEEEEEC-CCCCEEEEEEEECCCCEEEEEECCCCCEEEEECCCCCCEEEECCCC
Q ss_conf             799906999971799699998448954699406-8867489831104894399996489918999468899313423899
Q 001415          475 HPNKQLCVITCGDDKTIKVWDATNGAKQYIFEG-HEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPG  553 (1082)
Q Consensus       475 ~dg~~~~l~s~s~d~~i~iWd~~~~~~~~~~~~-h~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~  553 (1082)
                      +||++ +++.-..+..|.+-|+++.++...+.. ....+..+.....++..+++..+.+..-                  
T Consensus        97 yDGry-lFVNDkan~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP------------------  157 (459)
T d1fwxa2          97 YDGRF-LFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETP------------------  157 (459)
T ss_dssp             EEEEE-EEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEE------------------
T ss_pred             CCEEE-EEEECCCCCEEEEEECCCEEEEEEEECCCCCCCCEEECCCCCCEEEEECCCCCCCC------------------
T ss_conf             55128-99975898638999885405667996678877750120257974799736765444------------------


Q ss_pred             CCEEEEEECCCCCEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCCCCCEEEECCCCCEE
Q ss_conf             71578798669973662311463069994189997999707982999987885137997059999996808986999899
Q 001415          554 RWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLL  633 (1082)
Q Consensus       554 ~~v~~~~~s~d~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l  633 (1082)
                             +..|+..+- .            + .+      ..+.+.++|..+.+....+...+.   ...+.++++|+++
T Consensus       158 -------~pndg~~l~-d------------~-~~------y~~~~t~ID~~tm~V~~QV~V~g~---ld~~~~s~dGK~a  207 (459)
T d1fwxa2         158 -------LVNDGTNME-D------------V-AN------YVNVFTAVDADKWEVAWQVLVSGN---LDNCDADYEGKWA  207 (459)
T ss_dssp             -------SSCSSSSTT-C------------G-G-------EEEEEEEEETTTTEEEEEEEESSC---CCCEEECSSSSEE
T ss_pred             -------CCCCCCCCC-C------------H-HH------CCEEEEEEECCCCEEEEEEEECCC---HHCCCCCCCCCEE
T ss_conf             -------599985132-4------------0-11------226899996677669899640897---2015318999989


Q ss_pred             EEEECCC
Q ss_conf             9997899
Q 001415          634 AVSTNDN  640 (1082)
Q Consensus       634 ~~~~~dg  640 (1082)
                      ++.+.+.
T Consensus       208 f~TsyNS  214 (459)
T d1fwxa2         208 FSTSYNS  214 (459)
T ss_dssp             EEEESCT
T ss_pred             EEEECCC
T ss_conf             9971355

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=97.78  E-value=0.00072  Score=37.51  Aligned_cols=22  Identities=9%  Similarity=0.149  Sum_probs=12.0

Q ss_pred             EEEECCCCCEEEEECCCCCEEE
Q ss_conf             9998079919999725641356
Q 001415          374 LLVGTNVGDIGLWEVGSRERLV  395 (1082)
Q Consensus       374 lasgs~dg~i~iwd~~~~~~~~  395 (1082)
                      +..++.++.|.-.|..+|+.+=
T Consensus        80 vyv~t~~~~v~AlDa~TG~~~W  101 (573)
T d1kb0a2          80 MYVSASWSVVHAIDTRTGNRIW  101 (573)
T ss_dssp             EEEECGGGCEEEEETTTTEEEE
T ss_pred             EEEECCCCEEEEEECCCCCEEE
T ss_conf             9997899969999589998587

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=97.35  E-value=0.0027  Score=33.61  Aligned_cols=59  Identities=14%  Similarity=0.104  Sum_probs=27.3

Q ss_pred             CEEEEEECCCCCEEEEECCCCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCEEEEEEC
Q ss_conf             82999972676210000027999654489986899669996468819998469960346527
Q 001415          941 TQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRIN 1002 (1082)
Q Consensus       941 ~~i~iwd~~~~~~~~~~~~~~h~~~i~~i~~s~dg~~l~t~s~dg~i~iwd~~~~~~~~~~~ 1002 (1082)
                      +.+.-+|+.+++.+-......+   ..+-.++-.+.+++.++.||.++.+|..+|+++-.+.
T Consensus       438 G~l~A~D~~tGk~~W~~~~~~~---~~gg~l~TagglVF~G~~dg~l~A~Da~tGe~LW~~~  496 (560)
T d1kv9a2         438 GALLAWDPVKQKAAWKVPYPTH---WNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFE  496 (560)
T ss_dssp             EEEEEEETTTTEEEEEEEESSS---CCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             CCEEEEECCCCEEEEECCCCCC---CCCCEEEECCCEEEEECCCCCEEEEECCCCCEEEEEE
T ss_conf             6468870778837310257888---8774059879989997789819999999985827998

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=97.35  E-value=0.0027  Score=33.58  Aligned_cols=59  Identities=15%  Similarity=0.049  Sum_probs=25.9

Q ss_pred             CEEEEEECCCCCEEEEECCCCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCEEEEEEC
Q ss_conf             82999972676210000027999654489986899669996468819998469960346527
Q 001415          941 TQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRIN 1002 (1082)
Q Consensus       941 ~~i~iwd~~~~~~~~~~~~~~h~~~i~~i~~s~dg~~l~t~s~dg~i~iwd~~~~~~~~~~~ 1002 (1082)
                      +.+.-+|+.+++.+-+.....   +..+-..+..+.++++++.||.++.+|..+|+.+-++.
T Consensus       444 G~l~AiD~~TG~~~W~~~~~~---~~~~g~l~TagglVf~G~~dg~l~A~Da~tGe~lW~~~  502 (571)
T d2ad6a1         444 GQIRAFDLTTGKAKWTKWEKF---AAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNFK  502 (571)
T ss_dssp             EEEEEECTTTCCEEEEEEESS---CCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             CCEEEECCCCCCEEEECCCCC---CCCCCEEEECCCEEEEECCCCEEEEEECCCCCEEEEEE
T ss_conf             617885367784642767899---98756059669979997789969999999986878998

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=97.31  E-value=0.003  Score=33.27  Aligned_cols=185  Identities=12%  Similarity=0.103  Sum_probs=83.4

Q ss_pred             EEEEEE-CCEEEEEECCCCEEEEEECCCCCCEEEEEEECCCCCEEEEEEC-CCCEEEEECCCCEEEEEECCCCCCEEEEE
Q ss_conf             389940-9908998668980578977999980599990599957999747-99589996203312135223555789999
Q 001415          800 YVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMD-DSSIQIYNVRVDEVKSKLKGHSKRITGLA  877 (1082)
Q Consensus       800 ~l~~~s-dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~sp~~~~~lasg~~-dg~I~iwd~~~~~~~~~l~~h~~~V~~i~  877 (1082)
                      .++.+. +|.+..+|..+++.+......... ....+.. .+..+..... ++.. -+.    .+....-++.  -..++
T Consensus       329 ~v~~~~k~G~l~~lDr~tGe~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~-~~~----~~pg~~Gg~~--w~~~a  399 (573)
T d1kb0a2         329 VILHAPKNGFFFVLDRTNGKFISAKNFVPVN-WASGYDK-HGKPIGIAAARDGSK-PQD----AVPGPYGAHN--WHPMS  399 (573)
T ss_dssp             EEEECCTTSEEEEEETTTCCEEEEEESSCCS-SEEEECT-TSCEEECGGGGCTTS-CEE----CSSCTTCSSC--SSCCE
T ss_pred             EEEECCCCCEEEEECCCCCCCCCCCCCCCCC-CCCCCCC-CCCEEEEEECCCCCC-CEE----EEECCCCCCC--CCCCC
T ss_conf             2021255531688612434422311225664-3444211-220000000234666-337----8631567766--65542


Q ss_pred             EECCCCEEEEEECCCCEEEEECCCCCCCCCEEEECCCCCCCCCCCCCEEEECCCCCEEEEEECCEEEEEECCCCCEEEEE
Q ss_conf             95799989999289949999957863112302103689989889993899817884999993682999972676210000
Q 001415          878 FSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQW  957 (1082)
Q Consensus       878 ~s~d~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~i~fspdg~~l~~~~d~~i~iwd~~~~~~~~~~  957 (1082)
                      ++|+...++....+....++.....+...........+.     ......+ +++.-.....-+.+.-||+.+++.+-..
T Consensus       400 ~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-----~~~~~~~-~~~~p~~~~~~G~l~AiD~~tGk~~W~~  473 (573)
T d1kb0a2         400 FNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGT-----GWNTAKF-FNAEPPKSKPFGRLLAWDPVAQKAAWSV  473 (573)
T ss_dssp             EETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGG-----TCCCCEE-ECSSCCCSCCEEEEEEEETTTTEEEEEE
T ss_pred             CCCCCCEEEEECCCCCEEEECCCCCCCCCCCCCCCCCCC-----CCCCCCC-CCCCCCCCCCCCCEEEECCCCCCEEEEE
T ss_conf             088761698541115425311555323557787531035-----5322233-4568877787361787578778667051


Q ss_pred             CCCCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCEEEEEEC
Q ss_conf             027999654489986899669996468819998469960346527
Q 001415          958 VPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRIN 1002 (1082)
Q Consensus       958 ~~~~h~~~i~~i~~s~dg~~l~t~s~dg~i~iwd~~~~~~~~~~~ 1002 (1082)
                      ...   .+..+-..+-.|.++++++.||.++.+|..+|+.+-.+.
T Consensus       474 ~~~---~p~~gg~lstagglVF~G~~dg~l~A~Da~TGe~LW~~~  515 (573)
T d1kb0a2         474 EHV---SPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAP  515 (573)
T ss_dssp             EES---SSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             CCC---CCCCCCEEEECCCEEEEECCCCEEEEEECCCCCEEEEEE
T ss_conf             688---988776079869989997799919999999886857998

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=97.23  E-value=0.0036  Score=32.75  Aligned_cols=126  Identities=8%  Similarity=0.023  Sum_probs=60.8

Q ss_pred             CCCEEEEEECCCCCEEEEEC-CCCCEEEEECEEEECCCCCCCCCCCCCCCCCCCCEEEEEEECCCCEEEEEECCCEEEEE
Q ss_conf             89829999807991999972-56413565111652157788321101136989755599990299869999689819999
Q 001415          369 VQQTLLLVGTNVGDIGLWEV-GSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIY  447 (1082)
Q Consensus       369 dg~~llasgs~dg~i~iwd~-~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~i~~spdg~~las~~~d~~i~iw  447 (1082)
                      +|. +.++.+.++.|...|. ++|+.+=+       ........... .......-..+++.  +..+..++.++.+.-.
T Consensus        62 ~g~-vyv~t~~~~~v~Alda~~tG~~~W~-------~~~~~~~~~~~-~~~~~~~~rg~a~~--~~~i~~~~~~g~l~al  130 (571)
T d2ad6a1          62 GDM-MYVHSAFPNNTYALNLNDPGKIVWQ-------HKPKQDASTKA-VMCCDVVDRGLAYG--AGQIVKKQANGHLLAL  130 (571)
T ss_dssp             TTE-EEEECSTTTCEEEEETTCTTSEEEE-------ECCCCCGGGGG-GCTTCSCCCCCEEE--TTEEEEECTTSEEEEE
T ss_pred             CCE-EEEECCCCCEEEEEECCCCCCEEEE-------ECCCCCCCCCC-CCCCCCCCCCCEEE--CCEEEEEECCCCEEEE
T ss_conf             999-9994287995999948999866888-------35888865442-00247688862650--8869999179757821


Q ss_pred             ECCCCCEEEEEEEEECCC-CCEEEEEECCCCCCEEEEEEE-----CCCCEEEEECCCCCEEEEEEC
Q ss_conf             944793134779861566-674499961799906999971-----799699998448954699406
Q 001415          448 SYHGGDEVRQHLEIDAHV-GGVNDIAFSHPNKQLCVITCG-----DDKTIKVWDATNGAKQYIFEG  507 (1082)
Q Consensus       448 d~~~~~~~~~~~~~~~h~-~~V~~i~fs~dg~~~~l~s~s-----~d~~i~iWd~~~~~~~~~~~~  507 (1082)
                      |.++++..........+. ..++.--.-.++.  +++..+     .+|.|+-+|+.+|+.+.++..
T Consensus       131 da~tG~~~w~~~~~~~~~~~~~t~~p~v~~~~--vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~t  194 (571)
T d2ad6a1         131 DAKTGKINWEVEVCDPKVGSTLTQAPFVAKDT--VLMGCSGAELGVRGAVNAFDLKTGELKWRAFA  194 (571)
T ss_dssp             ETTTCCEEEEEECCCGGGTCBCCSCCEEETTE--EEEECBCGGGTCCCEEEEEETTTCCEEEEEES
T ss_pred             EHHHHHHHCCCCCCCCCCCCCEEECCEEECCE--EEEEECCCCCCCCCCEEEEECCCCCEEEEEEC
T ss_conf             00211220234445544324145367575885--88850234423467479998889858899704

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=97.20  E-value=0.0039  Score=32.50  Aligned_cols=122  Identities=11%  Similarity=0.045  Sum_probs=60.6

Q ss_pred             CCCEEEEEECCCCCEEEEECCCCCEEEEECEEEECCCCCCCCCCCCCCCCCCCCEEEEEEECCCCEEEEEECCCEEEEEE
Q ss_conf             89829999807991999972564135651116521577883211011369897555999902998699996898199999
Q 001415          369 VQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYS  448 (1082)
Q Consensus       369 dg~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~i~~spdg~~las~~~d~~i~iwd  448 (1082)
                      +|.  +..++.++.|.-.|..+|+.+=+.....     ..............   ..++.  .+..+..+..++.+.-.|
T Consensus        66 ~g~--vyv~t~~~~v~AlDa~tG~~lW~~~~~~-----~~~~~~~~~~~~~~---~~~~~--~~~~v~~~~~~g~l~Ald  133 (560)
T d1kv9a2          66 DGV--IYTSMSWSRVIAVDAASGKELWRYDPEV-----AKVKARTSCCDAVN---RGVAL--WGDKVYVGTLDGRLIALD  133 (560)
T ss_dssp             TTE--EEEEEGGGEEEEEETTTCCEEEEECCCC-----CGGGGGGCTTCSCC---CCCEE--EBTEEEEECTTSEEEEEE
T ss_pred             CCE--EEEECCCCEEEEEECCCCCEEEEECCCC-----CCCCCCCCCCCCCC---CCCCE--ECCEEEEEECCCEEEEEE
T ss_conf             999--9997899959999689998798877987-----76445443224653---57504--688499973898799997


Q ss_pred             CCCCCEEEEEEEEECCCCC--EEEEEECCCCCCEEEEEEE------CCCCEEEEECCCCCEEEEEE
Q ss_conf             4479313477986156667--4499961799906999971------79969999844895469940
Q 001415          449 YHGGDEVRQHLEIDAHVGG--VNDIAFSHPNKQLCVITCG------DDKTIKVWDATNGAKQYIFE  506 (1082)
Q Consensus       449 ~~~~~~~~~~~~~~~h~~~--V~~i~fs~dg~~~~l~s~s------~d~~i~iWd~~~~~~~~~~~  506 (1082)
                      ..+++.+..... ..+...  ++..-.-.++.   ++.+.      ..|.|.-+|.++|+.+..+.
T Consensus       134 a~tG~~~w~~~~-~~~~~~~~~~~~p~v~~~~---vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~  195 (560)
T d1kv9a2         134 AKTGKAIWSQQT-TDPAKPYSITGAPRVVKGK---VIIGNGGAEYGVRGFVSAYDADTGKLAWRFY  195 (560)
T ss_dssp             TTTCCEEEEEEC-SCTTSSCBCCSCCEEETTE---EEECCBCTTTCCBCEEEEEETTTCCEEEEEE
T ss_pred             CCCCCEEECCCC-CCCCCCEEEEEEEEEECCC---CCCCCCCEECCCCCEEEEEECCCCEEEEEEE
T ss_conf             778957730576-6755404543200450685---1036531100135538999778862776641

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=96.94  E-value=0.0067  Score=30.92  Aligned_cols=71  Identities=17%  Similarity=0.155  Sum_probs=31.4

Q ss_pred             CEEEEEECCCEEEEEECCCCCEEEEEEEEECCCC-CEEEEEECCCCCCEEEEEEE------CCCCEEEEECCCCCEEEEE
Q ss_conf             8699996898199999447931347798615666-74499961799906999971------7996999984489546994
Q 001415          433 SLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVG-GVNDIAFSHPNKQLCVITCG------DDKTIKVWDATNGAKQYIF  505 (1082)
Q Consensus       433 ~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~-~V~~i~fs~dg~~~~l~s~s------~d~~i~iWd~~~~~~~~~~  505 (1082)
                      .++..++.|+.+.-.|.++++.+.....-..+.. .++.--.--++.   ++.+.      ..|.|+-+|+.+|+.+.++
T Consensus       122 ~~v~~~t~dg~l~Alda~tG~~~w~~~~~d~~~~~~~t~~P~v~~~~---vivg~~~~e~~~~G~v~A~Da~TG~~~W~~  198 (596)
T d1w6sa_         122 ALILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAPYVVKDK---VIIGSSGAELGVRGYLTAYDVKTGEQVWRA  198 (596)
T ss_dssp             CEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEETTE---EEECCBCGGGTCCCEEEEEETTTCCEEEEE
T ss_pred             EEEEEEECCCCEEEECCCCCCEECCCCCCCCCCCCCCCCCCCEECCE---EEEEECCCCCCCCCCEEEEECCCCCEEEEE
T ss_conf             29999807987685436568410231014655564224588177775---899302344433573289887888577886


Q ss_pred             E
Q ss_conf             0
Q 001415          506 E  506 (1082)
Q Consensus       506 ~  506 (1082)
                      .
T Consensus       199 ~  199 (596)
T d1w6sa_         199 Y  199 (596)
T ss_dssp             E
T ss_pred             E
T ss_conf             5

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=96.80  E-value=0.0086  Score=30.19  Aligned_cols=53  Identities=6%  Similarity=0.011  Sum_probs=28.7

Q ss_pred             CCCEEEEEE-CCCEEEEEECCCCCEEEEEECCCCCCCCCEEEECC--CCCEEEEEEC
Q ss_conf             999799970-79829999878851379970599999968089869--9989999978
Q 001415          585 TKNRFLAAG-DDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNK--DGCLLAVSTN  638 (1082)
Q Consensus       585 ~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~--dg~~l~~~~~  638 (1082)
                      ||+++++.. .+..|.+.|+.+.++......... ..+..++..+  +..+++..+.
T Consensus        98 DGrylFVNDkan~RVAvIdl~~fkt~kIi~iPn~-~~~HG~r~~~~p~T~YV~~~~e  153 (459)
T d1fwxa2          98 DGRFLFMNDKANTRVARVRCDVMKCDAILEIPNA-KGIHGLRPQKWPRSNYVFCNGE  153 (459)
T ss_dssp             EEEEEEEEETTTTEEEEEETTTTEEEEEEECSSC-CSEEEEEECCSSBCSEEEEEEC
T ss_pred             CEEEEEEECCCCCEEEEEECCCEEEEEEEECCCC-CCCCEEECCCCCCEEEEECCCC
T ss_conf             5128999758986389998854056679966788-7775012025797479973676

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=96.79  E-value=0.0088  Score=30.11  Aligned_cols=59  Identities=15%  Similarity=0.137  Sum_probs=38.8

Q ss_pred             CEEEEEECCCCCEEEEECCCCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCEEEEEEC
Q ss_conf             82999972676210000027999654489986899669996468819998469960346527
Q 001415          941 TQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRIN 1002 (1082)
Q Consensus       941 ~~i~iwd~~~~~~~~~~~~~~h~~~i~~i~~s~dg~~l~t~s~dg~i~iwd~~~~~~~~~~~ 1002 (1082)
                      +.+.-+|+.+++.+-.....   .++.+-..+..|.++++++.||.++.+|..+|+++-++.
T Consensus       466 G~l~AiD~~TG~i~W~~~~~---~p~~~g~lstagglVF~Gt~dg~l~A~Da~TGe~LW~~~  524 (582)
T d1flga_         466 GSLRAMDPVSGKVVWEHKEH---LPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQ  524 (582)
T ss_dssp             EEEEEECTTTCCEEEEEEES---SCCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             CEEEEECCCCCCEEEECCCC---CCCCCCEEEECCCEEEEECCCCEEEEEECCCCCEEEEEE
T ss_conf             75999807899587326779---997450169769869996799969999999986867988

>d2nxpa1 d.379.1.1 (A:195-343) TAF5 subunit of TFIID {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Taf5 N-terminal domain-like
superfamily: Taf5 N-terminal domain-like
family: Taf5 N-terminal domain-like
domain: TAF5 subunit of TFIID
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.73  E-value=0.0046  Score=32.06  Aligned_cols=70  Identities=16%  Similarity=0.264  Sum_probs=59.2

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHCCCCC
Q ss_conf             76322035788999899998805999999999985034423359789999998754535310122214899
Q 001415           65 DNRYSMKIFFEIRKQKYLEALDKHDRAKAVEILVKDLKVFSTFNEELFKEITQLLTLENFRENEQLSKYGD  135 (1082)
Q Consensus        65 ~~~~~~~~~~~i~~~~~~ell~~~~~~~a~~~l~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~  135 (1082)
                      ..++.+ ++|+++.+.|+||+..+...+|..|+++.-..+...+.++.++|..+....++..++....+++
T Consensus        39 K~EL~~-lLyPvFvh~yL~Lv~~~~~~~A~~F~~kf~~~~~~~~~~~I~~L~~i~~~~~l~~n~~~~~~r~  108 (149)
T d2nxpa1          39 RAELSQ-LFYPLFVHMYLELVYNQHENEAKSFFEKFHGDQECYYQDDLRVLSSLTKKEHMKGNETMLDFRT  108 (149)
T ss_dssp             HHHHGG-GHHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGSCGGGHHHHHHHHTCCSHHHHTTCGGGGGGCG
T ss_pred             HHHHHH-HHHHHHHHHHHHHHHCCCHHHHHHHHHHHCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHC
T ss_conf             999998-8999999999999978987899999998222435889999999873799888732489999737

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=96.62  E-value=0.011  Score=29.34  Aligned_cols=74  Identities=9%  Similarity=0.112  Sum_probs=33.3

Q ss_pred             EEEEEEECCCCEEEEEECC-CEEEEEECCCCCEEEEEEEEECCCCCEEEEEECCCCCCEEEEEEECC------CCEEEEE
Q ss_conf             5599990299869999689-81999994479313477986156667449996179990699997179------9699998
Q 001415          423 VNRVIWSPDGSLFGVAYSR-HIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDD------KTIKVWD  495 (1082)
Q Consensus       423 V~~i~~spdg~~las~~~d-~~i~iwd~~~~~~~~~~~~~~~h~~~V~~i~fs~dg~~~~l~s~s~d------~~i~iWd  495 (1082)
                      ....++.+||++++.|+.+ ..+.+||..+..-.. ...+. ....-..++..+||+  +++.++.+      ..+.+||
T Consensus        78 ~~~~~~~~~g~i~v~Gg~~~~~~~~yd~~~~~w~~-~~~~~-~~r~~~~~~~~~dG~--v~v~GG~~~~~~~~~~v~~yd  153 (387)
T d1k3ia3          78 CPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIP-GPDMQ-VARGYQSSATMSDGR--VFTIGGSWSGGVFEKNGEVYS  153 (387)
T ss_dssp             SCEEEECTTSCEEEECSSSTTCEEEEEGGGTEEEE-CCCCS-SCCSSCEEEECTTSC--EEEECCCCCSSSCCCCEEEEE
T ss_pred             EEEEEEECCCCEEEEECCCCCCEEEECCCCCCCCC-CCCCC-CCCCCCCEEEECCCC--EEEECCCCCCCCCCCEEEEEC
T ss_conf             56899946886898636888621675675574421-56566-421013035531782--665213663335432056634


Q ss_pred             CCCCC
Q ss_conf             44895
Q 001415          496 ATNGA  500 (1082)
Q Consensus       496 ~~~~~  500 (1082)
                      ..+.+
T Consensus       154 ~~~~~  158 (387)
T d1k3ia3         154 PSSKT  158 (387)
T ss_dssp             TTTTE
T ss_pred             CCCCC
T ss_conf             88895

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=96.43  E-value=0.015  Score=28.54  Aligned_cols=57  Identities=16%  Similarity=0.214  Sum_probs=31.5

Q ss_pred             EEEEECCCCCEEEEEEEEECCCCCEEEEEECCCCCCEEEEEEECC-CCEEEEECCCCCEE
Q ss_conf             999994479313477986156667449996179990699997179-96999984489546
Q 001415          444 VQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDD-KTIKVWDATNGAKQ  502 (1082)
Q Consensus       444 i~iwd~~~~~~~~~~~~~~~h~~~V~~i~fs~dg~~~~l~s~s~d-~~i~iWd~~~~~~~  502 (1082)
                      +.+||..++.-.........|.......++.+++.  +++.|+.+ ..+.+||..+..-.
T Consensus        54 ~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~--i~v~Gg~~~~~~~~yd~~~~~w~  111 (387)
T d1k3ia3          54 TSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQ--IVVTGGNDAKKTSLYDSSSDSWI  111 (387)
T ss_dssp             EEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSC--EEEECSSSTTCEEEEEGGGTEEE
T ss_pred             EEEEECCCCCEEECCCCCCCCCCCEEEEEEECCCC--EEEEECCCCCCEEEECCCCCCCC
T ss_conf             99998888968666778987445256899946886--89863688862167567557442

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.28  E-value=0.018  Score=28.00  Aligned_cols=14  Identities=21%  Similarity=0.019  Sum_probs=5.1

Q ss_pred             CCEEEEECCCCEEE
Q ss_conf             81999846996034
Q 001415          985 ATVCVFSAANLKLR  998 (1082)
Q Consensus       985 g~i~iwd~~~~~~~  998 (1082)
                      +.|...+..+++.+
T Consensus       229 ~~I~~~~~~~g~~~  242 (263)
T d1npea_         229 NSVIAMDLAISKEM  242 (263)
T ss_dssp             TEEEEEETTTTEEE
T ss_pred             CEEEEEECCCCCCC
T ss_conf             97999989899510

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.07  E-value=0.023  Score=27.28  Aligned_cols=31  Identities=16%  Similarity=0.009  Sum_probs=11.0

Q ss_pred             EEEEEECCCCCCEEEEEEECCCCEEEEECCCC
Q ss_conf             44999617999069999717996999984489
Q 001415          468 VNDIAFSHPNKQLCVITCGDDKTIKVWDATNG  499 (1082)
Q Consensus       468 V~~i~fs~dg~~~~l~s~s~d~~i~iWd~~~~  499 (1082)
                      +..+++.+.+.. +..+-...+.|.+.++...
T Consensus        79 p~glAvD~~~~~-lY~~d~~~~~I~v~~~~g~  109 (266)
T d1ijqa1          79 PDGLAVDWIHSN-IYWTDSVLGTVSVADTKGV  109 (266)
T ss_dssp             CCEEEEETTTTE-EEEEETTTTEEEEEETTSS
T ss_pred             CCEEEEEECCCE-EEEEECCCCEEEEEECCCC
T ss_conf             546898642652-8999548999985764895

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.99  E-value=0.025  Score=27.05  Aligned_cols=14  Identities=0%  Similarity=-0.081  Sum_probs=5.1

Q ss_pred             EEEEEEECCCCEEE
Q ss_conf             55999902998699
Q 001415          423 VNRVIWSPDGSLFG  436 (1082)
Q Consensus       423 V~~i~~spdg~~la  436 (1082)
                      +..++|.+..+.|.
T Consensus        38 ~~~ld~D~~~~~iy   51 (263)
T d1npea_          38 IIGLAFDCVDKVVY   51 (263)
T ss_dssp             EEEEEEETTTTEEE
T ss_pred             EEEEEEEECCCEEE
T ss_conf             79999985899999

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=95.83  E-value=0.029  Score=26.61  Aligned_cols=59  Identities=14%  Similarity=0.120  Sum_probs=38.5

Q ss_pred             CEEEEEECCCCCEEEEECCCCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCEEEEEEC
Q ss_conf             82999972676210000027999654489986899669996468819998469960346527
Q 001415          941 TQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRIN 1002 (1082)
Q Consensus       941 ~~i~iwd~~~~~~~~~~~~~~h~~~i~~i~~s~dg~~l~t~s~dg~i~iwd~~~~~~~~~~~ 1002 (1082)
                      +.+.-||..+++.+-.....   .+..+-.++..|.+++.|+.||.++.+|..+|+++-.+.
T Consensus       453 G~l~A~D~~TG~~~W~~~~~---~~~~gg~lsTagglVF~G~~Dg~l~A~Da~TGe~LW~~~  511 (596)
T d1w6sa_         453 GQIKAYNAITGDYKWEKMER---FAVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLWKFK  511 (596)
T ss_dssp             EEEEEECTTTCCEEEEEEES---SCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             CEEEEEECCCCCEECCCCCC---CCCCCCEEEECCCEEEEECCCCEEEEEECCCCCEEEEEE
T ss_conf             53899807888562332788---887441468669979997899959999999984836998

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=95.83  E-value=0.029  Score=26.59  Aligned_cols=53  Identities=19%  Similarity=0.335  Sum_probs=22.8

Q ss_pred             EEEEEEECCCCEEEEEEC-----CCEEEEEECCCCCEEEEEEEEECCCCCEEEEEECCCCCC
Q ss_conf             559999029986999968-----981999994479313477986156667449996179990
Q 001415          423 VNRVIWSPDGSLFGVAYS-----RHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQ  479 (1082)
Q Consensus       423 V~~i~~spdg~~las~~~-----d~~i~iwd~~~~~~~~~~~~~~~h~~~V~~i~fs~dg~~  479 (1082)
                      +...++|||++++|.+-.     ...+++.|+.+++.+..  .+..  .....++|++|++.
T Consensus       127 ~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~--~i~~--~~~~~~~W~~D~~~  184 (430)
T d1qfma1         127 LRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPD--VLER--VKFSCMAWTHDGKG  184 (430)
T ss_dssp             EEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEE--EEEE--ECSCCEEECTTSSE
T ss_pred             ECCEEECCCCCEEEEEECCCCCCHHEEEEECCCCCEECCC--CCCC--CCCCCEEECCCCCE
T ss_conf             3425853789879999556667210467741676403144--2224--32364178579989

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.52  E-value=0.037  Score=25.83  Aligned_cols=66  Identities=15%  Similarity=0.129  Sum_probs=30.0

Q ss_pred             CCCCEEEEECCCCEEEEEE-CCEEEEEECCCCEEEEEECCCCCCEEEEEEECCCCCEEEEEECCCCEE
Q ss_conf             8801899604998389940-990899866898057897799998059999059995799974799589
Q 001415          787 EAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQ  853 (1082)
Q Consensus       787 ~~i~~i~~s~dg~~l~~~s-dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~sp~~~~~lasg~~dg~I~  853 (1082)
                      +-..++..|+.-..+...+ .|.+.+||++++.++..-+-....|...+-....+.++++ ..+|.|.
T Consensus       256 DFPvamqvs~kygiiyviTK~G~i~lyDleTgt~i~~nRIs~~~iF~~a~~~~~~Gi~~V-Nr~GqVl  322 (327)
T d1utca2         256 DFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGV-NRKGQVL  322 (327)
T ss_dssp             CCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEETTTTEEEEE-ETTSEEE
T ss_pred             CCEEEEEEECCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCEEEECCCCCCCEEEEE-CCCCEEE
T ss_conf             847799964337999999667589999756662899940478844896267888608998-7897699

>d2j4ba1 d.379.1.1 (A:18-148) TAF5 subunit of TFIID {Encephalitozoon cuniculi [TaxId: 6035]}

class: Alpha and beta proteins (a+b)
fold: Taf5 N-terminal domain-like
superfamily: Taf5 N-terminal domain-like
family: Taf5 N-terminal domain-like
domain: TAF5 subunit of TFIID
species: Encephalitozoon cuniculi [TaxId: 6035]

Probab=95.33  E-value=0.016  Score=28.32  Aligned_cols=67  Identities=15%  Similarity=0.236  Sum_probs=52.6

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHCCC
Q ss_conf             763220357889998999988059999999999850344233597899999987545353101222148
Q 001415           65 DNRYSMKIFFEIRKQKYLEALDKHDRAKAVEILVKDLKVFSTFNEELFKEITQLLTLENFRENEQLSKY  133 (1082)
Q Consensus        65 ~~~~~~~~~~~i~~~~~~ell~~~~~~~a~~~l~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~  133 (1082)
                      ..++.+ ++|+++.+.|+||+..+...+|..|+++.-..+. .+.++.+.|..+.+..++.+++....+
T Consensus        21 K~EL~~-lLyPvFvh~yL~Lv~~~~~~~A~~F~~kf~~d~~-~~~~~i~~L~~i~~~~~l~~n~~~~~~   87 (131)
T d2j4ba1          21 KNDLLP-LLYPLFIHIYFDLIQQNKTDEAKEFFEKYRGDHY-NKSEEIKQFESIYTVQHIHENNFAYTF   87 (131)
T ss_dssp             HHHHGG-GHHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC---CHHHHHHHTTCCSHHHHHHCHHHHHH
T ss_pred             HHHHHH-HHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCHHH-HHHHHHHHHHCCCCHHHHHHHHHHHHH
T ss_conf             999998-8999999999999978878899999998130288-899999998746999888222999998

>d1uuja_ a.221.1.1 (A:) Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain
superfamily: Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain
family: Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain
domain: Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.53  E-value=0.022  Score=27.42  Aligned_cols=56  Identities=16%  Similarity=0.253  Sum_probs=45.0

Q ss_pred             HHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCC--HHHHHHHHHCCCHHHHHHHHCCC
Q ss_conf             499999999987461769999999986099864--78899775255789899986157
Q 001415            5 SRELVFLILQFLDEEKFKETVHKLEQESGFFFN--MKYFEDEVHNGNWDDVEKYLSGF   60 (1082)
Q Consensus         5 ~~~~~rli~q~L~~~g~~~s~~~L~~Esg~~~~--~~~~~~~i~~g~w~~~~~~l~~~   60 (1082)
                      +.|+.+-|++||..+||.+++.+|.+|+.+.++  ...-..-.|+-.|..++.+-.++
T Consensus         7 ~eeL~kaI~~Yl~~~~~~~~~~~l~~e~~l~~~~~~~~ky~glLEKKWtSViRLQkKI   64 (76)
T d1uuja_           7 RDELNRAIADYLRSNGYEEAYSVFKKEAELDMNEELDKKYAGLLEKKWTSVIRLQKKV   64 (76)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHTTCCCCHHHHHHHTTHHHHHHTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHCCCCHHHHHHHHHHHHHH
T ss_conf             9999999999999888299999999987789870466640372125899899999999

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=94.33  E-value=0.077  Score=23.70  Aligned_cols=98  Identities=11%  Similarity=0.035  Sum_probs=53.9

Q ss_pred             CEEEEEECCCCEEEEEECCCC----CEEEEECCCCCEEEEECEEEECCCCCCCCCCCCCCCCCCCCEEEEEEECCCCEEE
Q ss_conf             328898058982999980799----1999972564135651116521577883211011369897555999902998699
Q 001415          361 PMSMDFHPVQQTLLLVGTNVG----DIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFG  436 (1082)
Q Consensus       361 v~~~~fspdg~~llasgs~dg----~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~i~~spdg~~la  436 (1082)
                      +...++|||+++++.+-+.+|    .+++.|+.+++.+...                  +..  .....++|++|++.|.
T Consensus       127 ~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~------------------i~~--~~~~~~~W~~D~~~~~  186 (430)
T d1qfma1         127 LRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDV------------------LER--VKFSCMAWTHDGKGMF  186 (430)
T ss_dssp             EEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEE------------------EEE--ECSCCEEECTTSSEEE
T ss_pred             ECCEEECCCCCEEEEEECCCCCCHHEEEEECCCCCEECCCC------------------CCC--CCCCCEEECCCCCEEE
T ss_conf             34258537898799995566672104677416764031442------------------224--3236417857998999


Q ss_pred             EEECC----------------CEEEEEECCCCCEEEEEEEEECCC--CCEEEEEECCCCCC
Q ss_conf             99689----------------819999944793134779861566--67449996179990
Q 001415          437 VAYSR----------------HIVQIYSYHGGDEVRQHLEIDAHV--GGVNDIAFSHPNKQ  479 (1082)
Q Consensus       437 s~~~d----------------~~i~iwd~~~~~~~~~~~~~~~h~--~~V~~i~fs~dg~~  479 (1082)
                      ....+                ..|..|.+.+...-.. ..+....  ..+..+..+.+++.
T Consensus       187 Y~~~~~~~~~~~~~~~~~~~~~~v~~h~lgt~~~~d~-~v~~e~d~~~~~~~~~~s~d~~~  246 (430)
T d1qfma1         187 YNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDI-LCAEFPDEPKWMGGAELSDDGRY  246 (430)
T ss_dssp             EEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCE-EEECCTTCTTCEEEEEECTTSCE
T ss_pred             EEEECCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCC-CCCCCCCCCCEEEEEECCCCCCE
T ss_conf             9976266676544333457863389998898865310-02232357725775302687624

>d2j49a1 d.379.1.1 (A:149-282) TAF5 subunit of TFIID {Saccharomyces cerevisiae [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Taf5 N-terminal domain-like
superfamily: Taf5 N-terminal domain-like
family: Taf5 N-terminal domain-like
domain: TAF5 subunit of TFIID
species: Saccharomyces cerevisiae [TaxId: 4932]

Probab=93.32  E-value=0.017  Score=28.19  Aligned_cols=86  Identities=16%  Similarity=0.264  Sum_probs=59.0

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHCCCCC----CH
Q ss_conf             43576322035788999899998805999999999985034423359789999998754535310122214899----56
Q 001415           62 KVDDNRYSMKIFFEIRKQKYLEALDKHDRAKAVEILVKDLKVFSTFNEELFKEITQLLTLENFRENEQLSKYGD----TK  137 (1082)
Q Consensus        62 ~~~~~~~~~~~~~~i~~~~~~ell~~~~~~~a~~~l~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~----~~  137 (1082)
                      +.-..++.+ ++|+++.+.|+||+..+. .+|..|+.+.-..+...+.++.++|..+.+..++.+++....+++    ..
T Consensus        20 d~yK~EL~~-lLyPvFvh~yL~Lv~~~~-~~A~~F~~~f~~~~~~~~~~~i~~L~~i~~p~~l~~n~~~~~~r~nKy~I~   97 (134)
T d2j49a1          20 EIYKPELSY-IMYPIFIYLFLNLVAKNP-VYARRFFDRFSPDFKDFHGSEINRLFSVNSIDHIKENEVASAFQSHKYRIT   97 (134)
T ss_dssp             TTTHHHHHH-HHHHHHHHHHHHHHHHCH-HHHHHHHHHHGGGGHHHHHHHHHTTTTCCSHHHHHHCHHHHHHHSSCEEEE
T ss_pred             HHHHHHHHH-HHHHHHHHHHHHHHHCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCEEEE
T ss_conf             866999999-899999999999997587-999999999607777899999999875899999976588999873995889


Q ss_pred             HHH---HHHHHHHHH
Q ss_conf             799---999999971
Q 001415          138 SAR---SIMLVELKK  149 (1082)
Q Consensus       138 ~~r---~~l~~~l~~  149 (1082)
                      .+|   ..|+.-|++
T Consensus        98 ms~~s~~lLl~fL~~  112 (134)
T d2j49a1          98 MSKTTLNLLLYFLNE  112 (134)
T ss_dssp             ECHHHHHHHHHHHHH
T ss_pred             ECHHHHHHHHHHHHH
T ss_conf             768999999999986

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=90.71  E-value=0.23  Score=20.46  Aligned_cols=64  Identities=9%  Similarity=0.095  Sum_probs=26.5

Q ss_pred             EEEEEEECCCCCEEEEEECCCCEEEEECCCCEEEEEECCCCCCEEEEEEECCCCEEEEEECCCCE
Q ss_conf             05999905999579997479958999620331213522355578999995799989999289949
Q 001415          830 ATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQL  894 (1082)
Q Consensus       830 v~~i~~sp~~~~~lasg~~dg~I~iwd~~~~~~~~~l~~h~~~V~~i~~s~d~~~l~s~s~Dg~I  894 (1082)
                      ..++..|+ .-.++..-+.-|.+++||+.++.++..-+-....|...+-..+..-++....+|.|
T Consensus       258 Pvamqvs~-kygiiyviTK~G~i~lyDleTgt~i~~nRIs~~~iF~~a~~~~~~Gi~~VNr~GqV  321 (327)
T d1utca2         258 PVAMQISE-KHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQV  321 (327)
T ss_dssp             EEEEEEET-TTTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEETTTTEEEEEETTSEE
T ss_pred             EEEEEEEC-CCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCEEEECCCCCCCEEEEECCCCEE
T ss_conf             77999643-37999999667589999756662899940478844896267888608998789769

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=86.90  E-value=0.41  Score=18.72  Aligned_cols=124  Identities=14%  Similarity=0.081  Sum_probs=60.0

Q ss_pred             EEEECCCCCEEEEECCCCCEEEEECEEEECCCCCCCCCCCCCCCCCCCCE-EEEEEECCCCEEEEEECCCEEEEEECCCC
Q ss_conf             99980799199997256413565111652157788321101136989755-59999029986999968981999994479
Q 001415          374 LLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSV-NRVIWSPDGSLFGVAYSRHIVQIYSYHGG  452 (1082)
Q Consensus       374 lasgs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V-~~i~~spdg~~las~~~d~~i~iwd~~~~  452 (1082)
                      +.+++.++.|.-.|..+|+.+=+...+..     ..      .......+ ..+++  .+..+..++.++.+.-.|..++
T Consensus        71 vy~~t~~~~v~AlDa~TG~~lW~~~~~~~-----~~------~~~~~~~~~rg~a~--~~~~i~~~t~~~~l~alda~tG  137 (582)
T d1flga_          71 IYVTASYSRLFALDAKTGKRLWTYNHRLP-----DD------IRPCCDVVNRGAAI--YGDKVFFGTLDASVVALNKNTG  137 (582)
T ss_dssp             EEEEETTTEEEEEESSSCCEEEEEECCCC-----TT------CCCSSCSCCCCCEE--ETTEEEEEETTTEEEEEESSSC
T ss_pred             EEEECCCCEEEEEECCCCCEEEEECCCCC-----CC------CCCCCCCCCCCCEE--ECCCEEEECCCCEEEEECCCCC
T ss_conf             99968999599996899986888768898-----76------55333444677458--6781588648874998116666


Q ss_pred             CEEEEEEEEECCCCC--E--EEEEECC--CCCCEEEEEE------ECCCCEEEEECCCCCEEEEEECCCCCE
Q ss_conf             313477986156667--4--4999617--9990699997------179969999844895469940688674
Q 001415          453 DEVRQHLEIDAHVGG--V--NDIAFSH--PNKQLCVITC------GDDKTIKVWDATNGAKQYIFEGHEAPV  512 (1082)
Q Consensus       453 ~~~~~~~~~~~h~~~--V--~~i~fs~--dg~~~~l~s~------s~d~~i~iWd~~~~~~~~~~~~h~~~v  512 (1082)
                      +.+... .+..+...  .  .-..+.+  .+.. +++.+      +..+.|.-+|..+|+.+.++.......
T Consensus       138 ~~~W~~-~~~~~~~~~~~~~~p~~~~~~~~~~~-~~i~g~~~~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~  207 (582)
T d1flga_         138 KVVWKK-KFADHGAGYTMTGAPTIVKDGKTGKV-LLIHGSSGDEFGVVGRLFARDPDTGEEIWMRPFVEGHM  207 (582)
T ss_dssp             CEEEEE-ECSCGGGTCBCCSCCEEEECTTTCCE-EEEECCBCGGGCCBCEEEEECTTTCCEEEEEESSTTCE
T ss_pred             CEEEEE-CCCCCCCCCEEECCCEEECCCCEEEE-EEEECCCCCCCCCCCCEEEECCCCCCEEEEEECCCCCC
T ss_conf             302111-02477766124038667048847579-99907665434654634872388886789871217865

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=82.82  E-value=0.62  Score=17.50  Aligned_cols=26  Identities=12%  Similarity=0.279  Sum_probs=12.3

Q ss_pred             CCCCEEEEEECCCCCEEEEECCCCCEEE
Q ss_conf             5898299998079919999725641356
Q 001415          368 PVQQTLLLVGTNVGDIGLWEVGSRERLV  395 (1082)
Q Consensus       368 pdg~~llasgs~dg~i~iwd~~~~~~~~  395 (1082)
                      |+.. +++...+.+-|.+||+. |+.+.
T Consensus        38 p~~S-lI~gTdK~~Gl~vYdL~-G~~l~   63 (353)
T d1h6la_          38 PQNS-KLITTNKKSGLAVYSLE-GKMLH   63 (353)
T ss_dssp             GGGC-EEEEEETTSCCEEEETT-CCEEE
T ss_pred             CCCC-EEEEECCCCCEEEECCC-CCEEE
T ss_conf             6723-89997586887999189-96877

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=80.34  E-value=0.75  Score=16.92  Aligned_cols=64  Identities=16%  Similarity=0.105  Sum_probs=40.7

Q ss_pred             CCCCCCEEEEEECCCCEEEEEECCCCCEEEEECCCCCEEEEECEEEECCCCCCCCCCCCCCCCCCCCEEEEEEECC
Q ss_conf             7899932889805898299998079919999725641356511165215778832110113698975559999029
Q 001415          356 NQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPD  431 (1082)
Q Consensus       356 ~h~~~v~~~~fspdg~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~i~~spd  431 (1082)
                      ..-+..++|+|.|||+ ++++--..|.|++++..++.......+     ..     .. ....-.+....++|.|+
T Consensus        24 ~~L~~P~~la~~pdg~-llVter~~G~i~~v~~~~g~~~~i~~~-----~~-----~~-~~~~ge~GLLgia~~Pd   87 (450)
T d1crua_          24 SNLNKPHALLWGPDNQ-IWLTERATGKILRVNPESGSVKTVFQV-----PE-----IV-NDADGQNGLLGFAFHPD   87 (450)
T ss_dssp             CCCSSEEEEEECTTSC-EEEEETTTCEEEEECTTTCCEEEEEEC-----TT-----CC-CCTTSSCSEEEEEECTT
T ss_pred             CCCCCCEEEEEECCCE-EEEEEECCCEEEEEECCCCCEEECCCC-----CC-----CC-CCCCCCCCEEEEEECCC
T ss_conf             8999843899928990-999993488799998999967561368-----75-----20-03688874233796799