Citrus Sinensis ID: 001438
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 1077 | 2.2.26 [Sep-21-2011] | |||||||
| Q8LPK2 | 1273 | ABC transporter B family | yes | no | 0.985 | 0.833 | 0.792 | 0.0 | |
| Q9SGY1 | 1227 | ABC transporter B family | no | no | 0.960 | 0.842 | 0.760 | 0.0 | |
| Q9LJX0 | 1252 | ABC transporter B family | no | no | 0.978 | 0.841 | 0.482 | 0.0 | |
| Q9C7F8 | 1245 | ABC transporter B family | no | no | 0.977 | 0.845 | 0.481 | 0.0 | |
| Q9C7F2 | 1247 | ABC transporter B family | no | no | 0.950 | 0.821 | 0.482 | 0.0 | |
| Q9ZR72 | 1286 | ABC transporter B family | no | no | 0.968 | 0.811 | 0.471 | 0.0 | |
| Q9M1Q9 | 1296 | ABC transporter B family | no | no | 0.963 | 0.800 | 0.425 | 0.0 | |
| O80725 | 1286 | ABC transporter B family | no | no | 0.959 | 0.803 | 0.429 | 0.0 | |
| Q9FWX7 | 1278 | ABC transporter B family | no | no | 0.953 | 0.803 | 0.428 | 0.0 | |
| Q9FWX8 | 1273 | ABC transporter B family | no | no | 0.977 | 0.827 | 0.414 | 0.0 |
| >sp|Q8LPK2|AB2B_ARATH ABC transporter B family member 2 OS=Arabidopsis thaliana GN=ABCB2 PE=1 SV=3 | Back alignment and function desciption |
|---|
Score = 1755 bits (4546), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 847/1069 (79%), Positives = 951/1069 (88%), Gaps = 8/1069 (0%)
Query: 8 SFPVNDYNNSSNNNNNNNTEDQESSKKQQQKRSVSLFKLFAFADFYDYILMSLGSIGACV 67
S P N Y + + + +K+ + VSL KLF+FADFYD +LM+LGS+GAC+
Sbjct: 28 SSPTN-YTHLKLKKMQPSGDPAPEKEKEMTQPKVSLLKLFSFADFYDCVLMTLGSVGACI 86
Query: 68 HGVSVPVFFIFFGKLINIIGLAYLFPKTASHKVAKYSLDFVYLSVAILFSSWIEVSCWMY 127
HG SVP+FFIFFGKLINIIGLAYLFPK ASH+VAKYSLDFVYLSVAILFSSW+EV+CWM+
Sbjct: 87 HGASVPIFFIFFGKLINIIGLAYLFPKQASHRVAKYSLDFVYLSVAILFSSWLEVACWMH 146
Query: 128 TGERQAAKMRMAYLRSMLNQDISLFDTEASTGEVISAITSDIIVVQDALSEKVGNFMHYI 187
TGERQAAKMR AYLRSML+QDISLFDTEASTGEVISAITSDI+VVQDALSEKVGNF+HYI
Sbjct: 147 TGERQAAKMRRAYLRSMLSQDISLFDTEASTGEVISAITSDILVVQDALSEKVGNFLHYI 206
Query: 188 SRFLGGFIIGFARVWQISLVTLSIVPLIALAGGMYAYVTIGLIARVRKSYVKAGEIAEEV 247
SRF+ GF IGF VWQISLVTLSIVPLIALAGG+YA+V IGLIARVRKSY+KAGEIAEEV
Sbjct: 207 SRFIAGFAIGFTSVWQISLVTLSIVPLIALAGGIYAFVAIGLIARVRKSYIKAGEIAEEV 266
Query: 248 IGNVRTVQAFAGEDKAVKVYKEALSNTYKYGRKAGLAKGLGLGSMHCVLFLSWSLLVWYV 307
IGNVRTVQAF GE++AV++Y+EAL NTYKYGRKAGL KGLGLGSMHCVLFLSW+LLVW+
Sbjct: 267 IGNVRTVQAFTGEERAVRLYREALENTYKYGRKAGLTKGLGLGSMHCVLFLSWALLVWFT 326
Query: 308 SVVVHKHISNGGESFTTMLNVVIAGLSLGQAAPDITAFIRAKAAAYPIFEMIERDTMSKA 367
SVVVHK I++GG+SFTTMLNVVIAGLSLGQAAPDI+AF+RAKAAAYPIF+MIER+T++K
Sbjct: 327 SVVVHKDIADGGKSFTTMLNVVIAGLSLGQAAPDISAFVRAKAAAYPIFKMIERNTVTKT 386
Query: 368 SSKTGRKLDKLSGHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVI 427
S+K+GRKL K+ GHI+FKD +F YPSRPDV IFD+ L IPAGKIVALVGGSGSGKSTVI
Sbjct: 387 SAKSGRKLGKVDGHIQFKDATFSYPSRPDVVIFDRLNLAIPAGKIVALVGGSGSGKSTVI 446
Query: 428 SLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIGLVNQEPALFATTIRENILYGKDDATM 487
SLIERFYEP+SG +LLDGNNI LD+KWLR QIGLVNQEPALFATTIRENILYGKDDAT
Sbjct: 447 SLIERFYEPISGAVLLDGNNISELDIKWLRGQIGLVNQEPALFATTIRENILYGKDDATA 506
Query: 488 EEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEA 547
EEITRAAKLSEA+SFI+NLPE FETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEA
Sbjct: 507 EEITRAAKLSEAISFINNLPEGFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEA 566
Query: 548 TSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRNADVIAVVQGRKIVKTGSHEELIS 607
TSALDAESE SVQEALDRVMVGRTTVVVAHRLST+RNAD+IAVV KIV+ G+HE LIS
Sbjct: 567 TSALDAESEKSVQEALDRVMVGRTTVVVAHRLSTVRNADIIAVVHEGKIVEFGNHENLIS 626
Query: 608 NPNSAYAALVQLQEAASQQSNSSQCPNMGRPLSIKFSRELSGTRTSFGASFRSEKESVLS 667
NP+ AY++L++LQE AS Q N S + RP SIK+SRELS TR+SF SE+ESV
Sbjct: 627 NPDGAYSSLLRLQETASLQRNPSLNRTLSRPHSIKYSRELSRTRSSFC----SERESVTR 682
Query: 668 HGAADATEPATAKHVSAIKLYSMVRPDWTYGVCGTICAIIAGAQMPLFALGVSQALVAYY 727
AD P+ V+ +LYSM+RPDW YGVCGTICA IAG+QMPLFALGVSQALV+YY
Sbjct: 683 PDGAD---PSKKVKVTVGRLYSMIRPDWMYGVCGTICAFIAGSQMPLFALGVSQALVSYY 739
Query: 728 MDWDTTQREVKKITILFCCAAVITVIVHAIEHLSFGIMGERLTLRVREKMFSAILSNEIG 787
WD TQ+E+KKI ILFCCA+VIT+IV+ IEH+ FG MGERLTLRVRE MF AIL NEIG
Sbjct: 740 SGWDETQKEIKKIAILFCCASVITLIVYTIEHICFGTMGERLTLRVRENMFRAILKNEIG 799
Query: 788 WFDEMDNSSSILASRLESDATLLRTIVVDRSTILIQNFGLVTASFVIAFILNWRITLVVV 847
WFDE+DN+SS+LASRLESDATLL+TIVVDRSTIL+QN GLV SF+IAFILNWR+TLVV+
Sbjct: 800 WFDEVDNTSSMLASRLESDATLLKTIVVDRSTILLQNLGLVVTSFIIAFILNWRLTLVVL 859
Query: 848 ATYPLIISGHISEKLFFQGYGGNLSKAYLKANMLAAEAVSNIRTVAAFCSEDKVLELYSR 907
ATYPL+ISGHISEKLF QGYGG+L+KAYLKANMLA E+VSNIRTVAAFC+E+K+LELYSR
Sbjct: 860 ATYPLVISGHISEKLFMQGYGGDLNKAYLKANMLAGESVSNIRTVAAFCAEEKILELYSR 919
Query: 908 ELVEPSKRSFIRGQIAGIFYGISQFFIFSSYGLALWYGSVLMGKELASFKSVMKSFMVLI 967
EL+EPSK SF RGQIAG+FYG+SQFFIFSSYGLALWYGS LM K LA FKSVMK+FMVLI
Sbjct: 920 ELLEPSKSSFRRGQIAGLFYGVSQFFIFSSYGLALWYGSTLMDKGLAGFKSVMKTFMVLI 979
Query: 968 VTALAMGETLALVPDLLKGNQMAASVFEVLDRKTQVIGDIGEELTNVEGTIELRGVHFSY 1027
VTALAMGETLAL PDLLKGNQM ASVFE+LDRKTQ++G+ EEL NVEGTIEL+GVHFSY
Sbjct: 980 VTALAMGETLALAPDLLKGNQMVASVFEILDRKTQIVGETSEELNNVEGTIELKGVHFSY 1039
Query: 1028 PSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGK 1076
PSRP+VVIF+DF+L VRAGKSMALVGQSGSGKS+V+SLILRFYDPTAGK
Sbjct: 1040 PSRPDVVIFRDFDLIVRAGKSMALVGQSGSGKSSVISLILRFYDPTAGK 1088
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SGY1|AB10B_ARATH ABC transporter B family member 10 OS=Arabidopsis thaliana GN=ABCB10 PE=1 SV=2 | Back alignment and function description |
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Score = 1660 bits (4299), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 804/1057 (76%), Positives = 926/1057 (87%), Gaps = 23/1057 (2%)
Query: 21 NNNNNTEDQESSKKQQQKRSVSLFKLFAFADFYDYILMSLGSIGACVHGVSVPVFFIFFG 80
+N+ D +++K++++ SVS KLF+FADFYD +LM+LGSIGAC+HG SVPVFFIFFG
Sbjct: 4 SNDPAIVDMAAAEKEKKRPSVSFLKLFSFADFYDCVLMALGSIGACIHGASVPVFFIFFG 63
Query: 81 KLINIIGLAYLFPKTASHKVAKYSLDFVYLSVAILFSSWIEVSCWMYTGERQAAKMRMAY 140
KLINIIGLAYLFP+ ASHKVAKYSLDFVYLSV ILFSSW+EV+CWM+TGERQAAK+R AY
Sbjct: 64 KLINIIGLAYLFPQEASHKVAKYSLDFVYLSVVILFSSWLEVACWMHTGERQAAKIRKAY 123
Query: 141 LRSMLNQDISLFDTEASTGEVISAITSDIIVVQDALSEKVGNFMHYISRFLGGFIIGFAR 200
LRSML+QDISLFDTE STGEVISAITS+I+VVQDA+SEKVGNFMH+ISRF+ GF IGFA
Sbjct: 124 LRSMLSQDISLFDTEISTGEVISAITSEILVVQDAISEKVGNFMHFISRFIAGFAIGFAS 183
Query: 201 VWQISLVTLSIVPLIALAGGMYAYVTIGLIARVRKSYVKAGEIAEEVIGNVRTVQAFAGE 260
VWQISLVTLSIVP IALAGG+YA+V+ GLI RVRKSYVKA EIAEEVIGNVRTVQAF GE
Sbjct: 184 VWQISLVTLSIVPFIALAGGIYAFVSSGLIVRVRKSYVKANEIAEEVIGNVRTVQAFTGE 243
Query: 261 DKAVKVYKEALSNTYKYGRKAGLAKGLGLGSMHCVLFLSWSLLVWYVSVVVHKHISNGGE 320
+KAV Y+ AL NTY YGRKAGLAKGLGLGS+H VLFLSW+LL+W+ S+VVHK I+NGGE
Sbjct: 244 EKAVSSYQGALRNTYNYGRKAGLAKGLGLGSLHFVLFLSWALLIWFTSIVVHKGIANGGE 303
Query: 321 SFTTMLNVVIAGLSLGQAAPDITAFIRAKAAAYPIFEMIERDTMSKASSKTGRKLDKLSG 380
SFTTMLNVVIAGLSLGQAAPDI+ F+RA AAAYPIF+MIER+T KTGRKL ++G
Sbjct: 304 SFTTMLNVVIAGLSLGQAAPDISTFMRASAAAYPIFQMIERNT----EDKTGRKLGNVNG 359
Query: 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGE 440
I FKDV+F YPSRPDV IFDK IPAGK+VALVGGSGSGKST+ISLIERFYEP G
Sbjct: 360 DILFKDVTFTYPSRPDVVIFDKLNFVIPAGKVVALVGGSGSGKSTMISLIERFYEPTDGA 419
Query: 441 ILLDGNNIKGLDLKWLRQQIGLVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAM 500
++LDGN+I+ LDLKWLR IGLVNQEP LFATTIRENI+YGKDDAT EEIT AAKLSEA+
Sbjct: 420 VMLDGNDIRYLDLKWLRGHIGLVNQEPVLFATTIRENIMYGKDDATSEEITNAAKLSEAI 479
Query: 501 SFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQ 560
SFI+NLPE FETQVGERGIQLSGGQKQRI+ISRAIVKNPSILLLDEATSALDAESE VQ
Sbjct: 480 SFINNLPEGFETQVGERGIQLSGGQKQRISISRAIVKNPSILLLDEATSALDAESEKIVQ 539
Query: 561 EALDRVMVGRTTVVVAHRLSTIRNADVIAVVQGRKIVKTGSHEELISNPNSAYAALVQLQ 620
EALDRVMVGRTTVVVAHRLST+RNAD+IAVV G KI+++GSH+ELISNP+ AY++L+++Q
Sbjct: 540 EALDRVMVGRTTVVVAHRLSTVRNADIIAVVGGGKIIESGSHDELISNPDGAYSSLLRIQ 599
Query: 621 EAASQQSNSSQCPNMGRPLSIKFSRELSGTRTSFGASFRSEKESVLSHGAADATEPATAK 680
EAAS N + P++ P+S K EL T T+ S +SV +P T K
Sbjct: 600 EAAS--PNLNHTPSL--PVSTKPLPELPITETT-----SSIHQSV--------NQPDTTK 642
Query: 681 H--VSAIKLYSMVRPDWTYGVCGTICAIIAGAQMPLFALGVSQALVAYYMDWDTTQREVK 738
V+ +LYSM+RPDW YG+CGT+ + IAG+QMPLFALG++QALV+YYMDW+TTQ EVK
Sbjct: 643 QAKVTVGRLYSMIRPDWKYGLCGTLGSFIAGSQMPLFALGIAQALVSYYMDWETTQNEVK 702
Query: 739 KITILFCCAAVITVIVHAIEHLSFGIMGERLTLRVREKMFSAILSNEIGWFDEMDNSSSI 798
+I+ILFCC +VITVIVH IEH +FGIMGERLTLRVR+KMFSAIL NEIGWFD++DN+SS+
Sbjct: 703 RISILFCCGSVITVIVHTIEHTTFGIMGERLTLRVRQKMFSAILRNEIGWFDKVDNTSSM 762
Query: 799 LASRLESDATLLRTIVVDRSTILIQNFGLVTASFVIAFILNWRITLVVVATYPLIISGHI 858
LASRLESDATLLRTIVVDRSTIL++N GLV +F+I+FILNWR+TLVV+ATYPLIISGHI
Sbjct: 763 LASRLESDATLLRTIVVDRSTILLENLGLVVTAFIISFILNWRLTLVVLATYPLIISGHI 822
Query: 859 SEKLFFQGYGGNLSKAYLKANMLAAEAVSNIRTVAAFCSEDKVLELYSRELVEPSKRSFI 918
SEK+F QGYGGNLSKAYLKANMLA E++SNIRTV AFC+E+KVL+LYS+EL+EPS+RSF
Sbjct: 823 SEKIFMQGYGGNLSKAYLKANMLAGESISNIRTVVAFCAEEKVLDLYSKELLEPSERSFR 882
Query: 919 RGQIAGIFYGISQFFIFSSYGLALWYGSVLMGKELASFKSVMKSFMVLIVTALAMGETLA 978
RGQ+AGI YG+SQFFIFSSYGLALWYGS+LM K L+SF+SVMK+FMVLIVTAL MGE LA
Sbjct: 883 RGQMAGILYGVSQFFIFSSYGLALWYGSILMEKGLSSFESVMKTFMVLIVTALVMGEVLA 942
Query: 979 LVPDLLKGNQMAASVFEVLDRKTQVIGDIGEELTNVEGTIELRGVHFSYPSRPEVVIFKD 1038
L PDLLKGNQM SVFE+LDR+TQV+GD GEEL+NVEGTIEL+GVHFSYPSRP+V IF D
Sbjct: 943 LAPDLLKGNQMVVSVFELLDRRTQVVGDTGEELSNVEGTIELKGVHFSYPSRPDVTIFSD 1002
Query: 1039 FNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAG 1075
FNL V +GKSMALVGQSGSGKS+VLSL+LRFYDPTAG
Sbjct: 1003 FNLLVPSGKSMALVGQSGSGKSSVLSLVLRFYDPTAG 1039
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LJX0|AB19B_ARATH ABC transporter B family member 19 OS=Arabidopsis thaliana GN=ABCB19 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 1050 bits (2715), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 518/1073 (48%), Positives = 751/1073 (69%), Gaps = 19/1073 (1%)
Query: 17 SSNNNNNNNTEDQESSKKQQQKRSVSLFKLFAFADFYDYILMSLGSIGACVHGVSVPVFF 76
S N + T E+ KK++Q S+ FKLF+FAD +DY+LM +GS+GA VHG S+PVFF
Sbjct: 2 SETNTTDAKTVPAEAEKKKEQ--SLPFFKLFSFADKFDYLLMFVGSLGAIVHGSSMPVFF 59
Query: 77 IFFGKLINIIGLAYLFPKTASHKVAKYSLDFVYLSVAILFSSWIEVSCWMYTGERQAAKM 136
+ FG+++N G + H+V++YSL FVYL + + FSS+ E++CWMY+GERQ A +
Sbjct: 60 LLFGQMVNGFGKNQMDLHQMVHEVSRYSLYFVYLGLVVCFSSYAEIACWMYSGERQVAAL 119
Query: 137 RMAYLRSMLNQDISLFDTEASTGEVISAITSDIIVVQDALSEKVGNFMHYISRFLGGFII 196
R YL ++L QD+ FDT+A TG+++ ++++D ++VQDA+SEKVGNF+HY+S FL G ++
Sbjct: 120 RKKYLEAVLKQDVGFFDTDARTGDIVFSVSTDTLLVQDAISEKVGNFIHYLSTFLAGLVV 179
Query: 197 GFARVWQISLVTLSIVPLIALAGGMYAYVTIGLIARVRKSYVKAGEIAEEVIGNVRTVQA 256
GF W+++L++++++P IA AGG+YAY G+ ++ R+SY AG IAE+ I VRTV +
Sbjct: 180 GFVSAWKLALLSVAVIPGIAFAGGLYAYTLTGITSKSRESYANAGVIAEQAIAQVRTVYS 239
Query: 257 FAGEDKAVKVYKEALSNTYKYGRKAGLAKGLGLGSMHCVLFLSWSLLVWYVSVVVHKHIS 316
+ GE KA+ Y +A+ T K G KAG+AKGLGLG + + +SW+L+ WY V + +
Sbjct: 240 YVGESKALNAYSDAIQYTLKLGYKAGMAKGLGLGCTYGIACMSWALVFWYAGVFIRNGQT 299
Query: 317 NGGESFTTMLNVVIAGLSLGQAAPDITAFIRAKAAAYPIFEMIERDTMSKASSKTGRKLD 376
+GG++FT + + ++ G+SLGQ+ ++ AF + KAA Y + E+I + G+ LD
Sbjct: 300 DGGKAFTAIFSAIVGGMSLGQSFSNLGAFSKGKAAGYKLMEIINQRPTIIQDPLDGKCLD 359
Query: 377 KLSGHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEP 436
++ G+IEFKDV+F YPSRPDV IF F + P+GK VA+VGGSGSGKSTV+SLIERFY+P
Sbjct: 360 QVHGNIEFKDVTFSYPSRPDVMIFRNFNIFFPSGKTVAVVGGSGSGKSTVVSLIERFYDP 419
Query: 437 LSGEILLDGNNIKGLDLKWLRQQIGLVNQEPALFATTIRENILYGKDDATMEEITRAAKL 496
SG+ILLDG IK L LK+LR+QIGLVNQEPALFATTI ENILYGK DATM E+ AA
Sbjct: 420 NSGQILLDGVEIKTLQLKFLREQIGLVNQEPALFATTILENILYGKPDATMVEVEAAASA 479
Query: 497 SEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESE 556
+ A SFI+ LP+ ++TQVGERG+QLSGGQKQRIAI+RA++K+P ILLLDEATSALDA SE
Sbjct: 480 ANAHSFITLLPKGYDTQVGERGVQLSGGQKQRIAIARAMLKDPKILLLDEATSALDASSE 539
Query: 557 NSVQEALDRVMVGRTTVVVAHRLSTIRNADVIAVVQGRKIVKTGSHEELISNPNSAYAAL 616
+ VQEALDRVMVGRTTVVVAHRL TIRN D IAV+Q ++V+TG+HEELI+ + AYA+L
Sbjct: 540 SIVQEALDRVMVGRTTVVVAHRLCTIRNVDSIAVIQQGQVVETGTHEELIAK-SGAYASL 598
Query: 617 VQLQEAASQQSNSSQCPNMGRPLSIKFSRELSGTRTSF-GASFRSEKESVLSHGA----- 670
++ QE + S+ P+ R S + S LS S S R+ S S GA
Sbjct: 599 IRFQEMVGTRDFSN--PSTRRTRSTRLSHSLSTKSLSLRSGSLRNLSYS-YSTGADGRIE 655
Query: 671 ----ADATEPATAKHVSAIKLYSMVRPDWTYGVCGTICAIIAGAQMPLFALGVSQAL-VA 725
A+ A +L + P+W Y + G + +I++G P FA+ +S + V
Sbjct: 656 MISNAETDRKTRAPENYFYRLLKLNSPEWPYSIMGAVGSILSGFIGPTFAIVMSNMIEVF 715
Query: 726 YYMDWDTTQREVKKITILFCCAAVITVIVHAIEHLSFGIMGERLTLRVREKMFSAILSNE 785
YY D+D+ +R+ K+ ++ A + V + I+H F IMGE LT RVR M SAIL NE
Sbjct: 716 YYTDYDSMERKTKEYVFIYIGAGLYAVGAYLIQHYFFSIMGENLTTRVRRMMLSAILRNE 775
Query: 786 IGWFDEMDNSSSILASRLESDATLLRTIVVDRSTILIQNFGLVTASFVIAFILNWRITLV 845
+GWFDE +++SS++A+RL +DA +++ + +R ++++QN + SF++AFI+ WR++L+
Sbjct: 776 VGWFDEDEHNSSLIAARLATDAADVKSAIAERISVILQNMTSLLTSFIVAFIVEWRVSLL 835
Query: 846 VVATYPLIISGHISEKLFFQGYGGNLSKAYLKANMLAAEAVSNIRTVAAFCSEDKVLELY 905
++ T+PL++ + +++L +G+ G+ +KA+ K +M+A E VSNIRTVAAF ++ K+L L+
Sbjct: 836 ILGTFPLLVLANFAQQLSLKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQSKILSLF 895
Query: 906 SRELVEPSKRSFIRGQIAGIFYGISQFFIFSSYGLALWYGSVLMGKELASFKSVMKSFMV 965
EL P KRS R Q +G +G+SQ ++ S L LWYG+ L+ K +++F V+K F+V
Sbjct: 896 CHELRVPQKRSLYRSQTSGFLFGLSQLALYGSEALILWYGAHLVSKGVSTFSKVIKVFVV 955
Query: 966 LIVTALAMGETLALVPDLLKGNQMAASVFEVLDRKTQV--IGDIGEELTNVEGTIELRGV 1023
L++TA ++ ET++L P++++G + SVF VLDR+T++ + + + G IE R V
Sbjct: 956 LVITANSVAETVSLAPEIIRGGEAVGSVFSVLDRQTRIDPDDADADPVETIRGDIEFRHV 1015
Query: 1024 HFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGK 1076
F+YPSRP+V++F+DFNL++RAG S ALVG SGSGKS+V+++I RFYDP AGK
Sbjct: 1016 DFAYPSRPDVMVFRDFNLRIRAGHSQALVGASGSGKSSVIAMIERFYDPLAGK 1068
|
Auxin efflux transporter that acts as a negative regulator of light signaling to promote hypocotyl elongation. Mediates the accumulation of chlorophyll and anthocyanin, as well as the expression of genes in response to light. Participates in auxin efflux and thus regulates the polar auxin basipetal transport (from auxin-producing leaves to auxin-sensitive tissues, and from root tips to root elongating zone). Involved in divers auxin-mediated responses including gravitropism, phototropism and lateral root formation. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9C7F8|AB13B_ARATH ABC transporter B family member 13 OS=Arabidopsis thaliana GN=ABCB13 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 1016 bits (2628), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 515/1070 (48%), Positives = 733/1070 (68%), Gaps = 17/1070 (1%)
Query: 13 DYNNSSNNNNNNNTEDQESSKKQQQKRSVSLFKLFAFADFYDYILMSLGSIGACVHGVSV 72
D S+N N + + KK +K SVSL LF+ AD DY LM LG +GAC+HG ++
Sbjct: 2 DNTERSSNGNIQAETEAKEEKKNIKKESVSLMGLFSAADKLDYFLMLLGGLGACIHGATL 61
Query: 73 PVFFIFFGKLINIIGLAYLFPKTASHKVAKYSLDFVYLSVAILFSSWIEVSCWMYTGERQ 132
P+FF+FFGK+++ +G PK S +V++ +L VYL + S+WI VSCWM TGERQ
Sbjct: 62 PLFFVFFGKMLDSLGNLSTDPKAISSRVSQNALYLVYLGLVNFVSAWIGVSCWMQTGERQ 121
Query: 133 AAKMRMAYLRSMLNQDISLFDTEASTGEVISAITSDIIVVQDALSEKVGNFMHYISRFLG 192
A++R+ YL+S+L +DI+ FDTEA +I I+SD I+VQDA+ +K + + Y+S+F+
Sbjct: 122 TARLRINYLKSILAKDITFFDTEARDSNLIFHISSDAILVQDAIGDKTDHVLRYLSQFIA 181
Query: 193 GFIIGFARVWQISLVTLSIVPLIALAGGMYAYVTIGLIARVRKSYVKAGEIAEEVIGNVR 252
GF+IGF VWQ++L+TL +VPLIA+AGG YA V + + +Y AG++AEEV+ VR
Sbjct: 182 GFVIGFLSVWQLTLLTLGVVPLIAIAGGGYAIVMSTISEKSETAYADAGKVAEEVMSQVR 241
Query: 253 TVQAFAGEDKAVKVYKEALSNTYKYGRKAGLAKGLGLGSMHCVLFLSWSLLVWYVSVVVH 312
TV AF GE+KAVK Y +L K G+++GLAKGLG+G + +LF +W+LL+WY S++V
Sbjct: 242 TVYAFVGEEKAVKSYSNSLKKALKLGKRSGLAKGLGVGLTYSLLFCAWALLLWYASLLVR 301
Query: 313 KHISNGGESFTTMLNVVIAGLSLGQAAPDITAFIRAKAAAYPIFEMI-ERDTMSKASSKT 371
+NG ++FTT+LNV+ +G +LGQAAP ++A + + AA IF MI ++ S
Sbjct: 302 HGKTNGAKAFTTILNVIFSGFALGQAAPSLSAIAKGRVAAANIFRMIGNNNSESSQRLDE 361
Query: 372 GRKLDKLSGHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIE 431
G L ++G IEF+ VSF YPSRP++ +F+ I +GK A VG SGSGKST+IS+++
Sbjct: 362 GTTLQNVAGRIEFQKVSFAYPSRPNM-VFENLSFTIRSGKTFAFVGPSGSGKSTIISMVQ 420
Query: 432 RFYEPLSGEILLDGNNIKGLDLKWLRQQIGLVNQEPALFATTIRENILYGKDDATMEEIT 491
RFYEP SGEILLDGN+IK L LKW R+Q+GLV+QEPALFATTI NIL GK++A M++I
Sbjct: 421 RFYEPNSGEILLDGNDIKSLKLKWFREQLGLVSQEPALFATTIASNILLGKENANMDQII 480
Query: 492 RAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSAL 551
AAK + A SFI +LP + TQVGE G QLSGGQKQRIAI+RA+++NP ILLLDEATSAL
Sbjct: 481 EAAKAANADSFIKSLPNGYNTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSAL 540
Query: 552 DAESENSVQEALDRVMVGRTTVVVAHRLSTIRNADVIAVVQGRKIVKTGSHEELISNPNS 611
DAESE VQ+ALD VM RTT+VVAHRLSTIRN D I V++ ++ +TGSH EL+
Sbjct: 541 DAESEKIVQQALDNVMEKRTTIVVAHRLSTIRNVDKIVVLRDGQVRETGSHSELMLRGGD 600
Query: 612 AYAALVQLQEAASQQSNSSQCPNMGRPLSIKFSRELSGTRTSFGASFRSEKESVLSHGAA 671
YA LV QE Q+++ R + + + +G+ +S S S
Sbjct: 601 -YATLVNCQETEPQENS--------RSIMSETCKSQAGSSSSRRVSSSRRTSSFRVDQEK 651
Query: 672 DATEPATAKHVSAIKLYSMVR---PDWTYGVCGTICAIIAGAQMPLFALGVSQALVAYYM 728
+ + S+ ++ +++ P+W Y + G+I A++AGAQ PLF++G++ L A+Y
Sbjct: 652 TKNDDSKKDFSSSSMIWELIKLNSPEWPYALLGSIGAVLAGAQTPLFSMGIAYVLTAFYS 711
Query: 729 DW-DTTQREVKKITILFCCAAVITVIVHAIEHLSFGIMGERLTLRVREKMFSAILSNEIG 787
+ + +R+V+K+ I+F A ++T ++ ++H + +MGERLT RVR +FSAILSNEIG
Sbjct: 712 PFPNVIKRDVEKVAIIFAGAGIVTAPIYLLQHYFYTLMGERLTSRVRLSLFSAILSNEIG 771
Query: 788 WFDEMDNSSSILASRLESDATLLRTIVVDRSTILIQNFGLVTASFVIAFILNWRITLVVV 847
WFD +N++ L S L +DATL+R+ + DR + ++QN L + +AF +WR+ VV
Sbjct: 772 WFDLDENNTGSLTSILAADATLVRSALADRLSTIVQNLSLTVTALALAFFYSWRVAAVVT 831
Query: 848 ATYPLIISGHISEKLFFQGYGGNLSKAYLKANMLAAEAVSNIRTVAAFCSEDKVLELYSR 907
A +PL+I+ ++E+LF +G+GG+ ++AY +A +A EA++NIRTVAA+ +E ++ E ++
Sbjct: 832 ACFPLLIAASLTEQLFLKGFGGDYTRAYSRATSVAREAIANIRTVAAYGAEKQISEQFTC 891
Query: 908 ELVEPSKRSFIRGQIAGIFYGISQFFIFSSYGLALWYGSVLMGKELASFKSVMKSFMVLI 967
EL +P+K +F+RG I+G YG+SQF F SY L LWY SVL+ + +F +KSFMVLI
Sbjct: 892 ELSKPTKNAFVRGHISGFGYGLSQFLAFCSYALGLWYVSVLINHKETNFGDSIKSFMVLI 951
Query: 968 VTALAMGETLALVPDLLKGNQMAASVFEVLDRKTQVIGDIGEE--LTNVEGTIELRGVHF 1025
VTA ++ ETLAL PD++KG Q SVF VL R+T++ D ++ V+G IE R V F
Sbjct: 952 VTAFSVSETLALTPDIVKGTQALGSVFRVLHRETKISPDQPNSRMVSQVKGDIEFRNVSF 1011
Query: 1026 SYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAG 1075
YP+RPE+ IFK+ NL+V AGKS+A+VG SGSGKSTV+ LI+RFYDP+ G
Sbjct: 1012 VYPTRPEIDIFKNLNLRVSAGKSLAVVGPSGSGKSTVIGLIMRFYDPSNG 1061
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9C7F2|AB14B_ARATH ABC transporter B family member 14 OS=Arabidopsis thaliana GN=ABCB14 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 1003 bits (2593), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 506/1048 (48%), Positives = 717/1048 (68%), Gaps = 24/1048 (2%)
Query: 40 SVSLFKLFAFADFYDYILMSLGSIGACVHGVSVPVFFIFFGKLINIIGLAYLFPKTASHK 99
SVSL LF+ AD DY LM LG +G C+HG ++P+FF+FFG +++ +G P S +
Sbjct: 30 SVSLMGLFSAADNVDYFLMFLGGLGTCIHGGTLPLFFVFFGGMLDSLGKLSTDPNAISSR 89
Query: 100 VAKYSLDFVYLSVAILFSSWIEVSCWMYTGERQAAKMRMAYLRSMLNQDISLFDTEASTG 159
V++ +L VYL + L S+WI V+CWM TGERQ A++R+ YL+S+L +DI+ FDTEA
Sbjct: 90 VSQNALYLVYLGLVNLVSAWIGVACWMQTGERQTARLRINYLKSILAKDITFFDTEARDS 149
Query: 160 EVISAITSDIIVVQDALSEKVGNFMHYISRFLGGFIIGFARVWQISLVTLSIVPLIALAG 219
I I+SD I+VQDA+ +K G+ + Y+ +F+ GF+IGF VWQ++L+TL +VPLIA+AG
Sbjct: 150 NFIFHISSDAILVQDAIGDKTGHVLRYLCQFIAGFVIGFLSVWQLTLLTLGVVPLIAIAG 209
Query: 220 GMYAYVTIGLIARVRKSYVKAGEIAEEVIGNVRTVQAFAGEDKAVKVYKEALSNTYKYGR 279
G YA V + + +Y AG++AEEV+ VRTV AF GE+KAVK Y +L K +
Sbjct: 210 GGYAIVMSTISEKSEAAYADAGKVAEEVMSQVRTVYAFVGEEKAVKSYSNSLKKALKLSK 269
Query: 280 KAGLAKGLGLGSMHCVLFLSWSLLVWYVSVVVHKHISNGGESFTTMLNVVIAGLSLGQAA 339
++GLAKGLG+G + +LF +W+LL WY S++V +NG ++FTT+LNV+ +G +LGQA
Sbjct: 270 RSGLAKGLGVGLTYSLLFCAWALLFWYASLLVRHGKTNGAKAFTTILNVIYSGFALGQAV 329
Query: 340 PDITAFIRAKAAAYPIFEMIERDTMSKASS-KTGRKLDKLSGHIEFKDVSFCYPSRPDVA 398
P ++A + + AA IF+MI + + + + G L + G IEF VSF YPSRP++
Sbjct: 330 PSLSAISKGRVAAANIFKMIGNNNLESSERLENGTTLQNVVGKIEFCGVSFAYPSRPNM- 388
Query: 399 IFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQ 458
+F+ I +GK A VG SGSGKST+IS+++RFYEP SGEILLDGN+IK L LKWLR+
Sbjct: 389 VFENLSFTIHSGKTFAFVGPSGSGKSTIISMVQRFYEPRSGEILLDGNDIKNLKLKWLRE 448
Query: 459 QIGLVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERG 518
Q+GLV+QEPALFATTI NIL GK+ A M++I AAK + A SFI +LP + TQVGE G
Sbjct: 449 QMGLVSQEPALFATTIASNILLGKEKANMDQIIEAAKAANADSFIKSLPNGYNTQVGEGG 508
Query: 519 IQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHR 578
QLSGGQKQRIAI+RA+++NP ILLLDEATSALDAESE VQ+ALD VM RTT+V+AHR
Sbjct: 509 TQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESEKIVQQALDNVMEKRTTIVIAHR 568
Query: 579 LSTIRNADVIAVVQGRKIVKTGSHEELISNPNSAYAALVQLQEAASQQSNSSQCPNMGRP 638
LSTIRN D I V++ ++ +TGSH ELIS YA LV Q+ Q+ N+ R
Sbjct: 569 LSTIRNVDKIVVLRDGQVRETGSHSELISRGGD-YATLVNCQDTEPQE-------NL-RS 619
Query: 639 LSIKFSRELSG-------TRTSFGASFRSEKESVLSHGAADATEPATAKHVSAIKLYSMV 691
+ + R +G + +SFR ++E + +++ IKL +
Sbjct: 620 VMYESCRSQAGSYSSRRVFSSRRTSSFREDQEKTEKDSKGEDLISSSSMIWELIKLNA-- 677
Query: 692 RPDWTYGVCGTICAIIAGAQMPLFALGVSQALVAYYMDWDT-TQREVKKITILFCCAAVI 750
P+W Y + G+I A++AG+Q LF++G++ L +Y + + +REV K+ I+F A ++
Sbjct: 678 -PEWLYALLGSIGAVLAGSQPALFSMGLAYVLTTFYSPFPSLIKREVDKVAIIFVGAGIV 736
Query: 751 TVIVHAIEHLSFGIMGERLTLRVREKMFSAILSNEIGWFDEMDNSSSILASRLESDATLL 810
T ++ ++H + +MGERLT RVR +FSAILSNEIGWFD +N++ L S L +DATL+
Sbjct: 737 TAPIYILQHYFYTLMGERLTSRVRLSLFSAILSNEIGWFDLDENNTGSLTSILAADATLV 796
Query: 811 RTIVVDRSTILIQNFGLVTASFVIAFILNWRITLVVVATYPLIISGHISEKLFFQGYGGN 870
R+ + DR + ++QN L + +AF +WR+ VV A +PL+I+ ++E+LF +G+GG+
Sbjct: 797 RSAIADRLSTIVQNLSLTITALALAFFYSWRVAAVVTACFPLLIAASLTEQLFLKGFGGD 856
Query: 871 LSKAYLKANMLAAEAVSNIRTVAAFCSEDKVLELYSRELVEPSKRSFIRGQIAGIFYGIS 930
++AY +A LA EA+SNIRTVAAF +E ++ E ++ EL +P+K + +RG I+G YG+S
Sbjct: 857 YTRAYSRATSLAREAISNIRTVAAFSAEKQISEQFTCELSKPTKSALLRGHISGFGYGLS 916
Query: 931 QFFIFSSYGLALWYGSVLMGKELASFKSVMKSFMVLIVTALAMGETLALVPDLLKGNQMA 990
Q F SY L LWY SVL+ + +F+ +KSFMVL+VTA ++ ETLAL PD++KG Q
Sbjct: 917 QCLAFCSYALGLWYISVLIKRNETNFEDSIKSFMVLLVTAYSVAETLALTPDIVKGTQAL 976
Query: 991 ASVFEVLDRKTQVIGDIGEE--LTNVEGTIELRGVHFSYPSRPEVVIFKDFNLKVRAGKS 1048
SVF VL R+T++ D +T+++G IE R V F+YP+RPE+ IFK+ NL+V AGKS
Sbjct: 977 GSVFRVLHRETEIPPDQPNSRLVTHIKGDIEFRNVSFAYPTRPEIAIFKNLNLRVSAGKS 1036
Query: 1049 MALVGQSGSGKSTVLSLILRFYDPTAGK 1076
+A+VG SGSGKSTV+ LI+RFYDP+ G
Sbjct: 1037 LAVVGPSGSGKSTVIGLIMRFYDPSNGN 1064
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9ZR72|AB1B_ARATH ABC transporter B family member 1 OS=Arabidopsis thaliana GN=ABCB1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 974 bits (2518), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 501/1063 (47%), Positives = 720/1063 (67%), Gaps = 20/1063 (1%)
Query: 34 KQQQKRSVSLFKLFAFADFYDYILMSLGSIGACVHGVSVPVFFIFFGKLINIIGLAYLFP 93
K+ + R V+ +LF FAD DY+LM +GS+GA VHG S+P+F FF L+N G
Sbjct: 20 KKAEIRGVAFKELFRFADGLDYVLMGIGSVGAFVHGCSLPLFLRFFADLVNSFGSNSNNV 79
Query: 94 KTASHKVAKYSLDFVYLSVAILFSSWIEVSCWMYTGERQAAKMRMAYLRSMLNQDISLFD 153
+ +V KY+L F+ + AI SSW E+SCWM++GERQ KMR+ YL + LNQDI FD
Sbjct: 80 EKMMEEVLKYALYFLVVGAAIWASSWAEISCWMWSGERQTTKMRIKYLEAALNQDIQFFD 139
Query: 154 TEASTGEVISAITSDIIVVQDALSEKVGNFMHYISRFLGGFIIGFARVWQISLVTLSIVP 213
TE T +V+ AI +D ++VQDA+SEK+GNF+HY++ F+ GFI+GF VWQ++LVTL++VP
Sbjct: 140 TEVRTSDVVFAINTDAVMVQDAISEKLGNFIHYMATFVSGFIVGFTAVWQLALVTLAVVP 199
Query: 214 LIALAGGMYAYVTIGLIARVRKSYVKAGEIAEEVIGNVRTVQAFAGEDKAVKVYKEALSN 273
LIA+ GG++ L + ++S +AG I E+ + +R V AF GE +A + Y AL
Sbjct: 200 LIAVIGGIHTTTLSKLSNKSQESLSQAGNIVEQTVVQIRVVMAFVGESRASQAYSSALKI 259
Query: 274 TYKYGRKAGLAKGLGLGSMHCVLFLSWSLLVWYVSVVVHKHISNGGESFTTMLNVVIAGL 333
K G K GLAKG+GLG+ + V+F ++LL+WY +V H++NGG + TM V+I GL
Sbjct: 260 AQKLGYKTGLAKGMGLGATYFVVFCCYALLLWYGGYLVRHHLTNGGLAIATMFAVMIGGL 319
Query: 334 SLGQAAPDITAFIRAKAAAYPIFEMIERDTMSKASSKTGRKLDKLSGHIEFKDVSFCYPS 393
+LGQ+AP + AF +AK AA IF +I+ + +S++G +LD ++G +E K+V F YPS
Sbjct: 320 ALGQSAPSMAAFAKAKVAAAKIFRIIDHKPTIERNSESGVELDSVTGLVELKNVDFSYPS 379
Query: 394 RPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDL 453
RPDV I + FCL +PAGK +ALVG SGSGKSTV+SLIERFY+P SG++LLDG ++K L L
Sbjct: 380 RPDVKILNNFCLSVPAGKTIALVGSSGSGKSTVVSLIERFYDPNSGQVLLDGQDLKTLKL 439
Query: 454 KWLRQQIGLVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQ 513
+WLRQQIGLV+QEPALFAT+I+ENIL G+ DA EI AA+++ A SFI LP+ F+TQ
Sbjct: 440 RWLRQQIGLVSQEPALFATSIKENILLGRPDADQVEIEEAARVANAHSFIIKLPDGFDTQ 499
Query: 514 VGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTV 573
VGERG+QLSGGQKQRIAI+RA++KNP+ILLLDEATSALD+ESE VQEALDR M+GRTT+
Sbjct: 500 VGERGLQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSESEKLVQEALDRFMIGRTTL 559
Query: 574 VVAHRLSTIRNADVIAVVQGRKIVKTGSHEELISN-PNSAYAALVQLQEAASQQSNSSQC 632
++AHRLSTIR AD++AV+Q + + G+H+EL S N YA L+++QEAA + + S+
Sbjct: 560 IIAHRLSTIRKADLVAVLQQGSVSEIGTHDELFSKGENGVYAKLIKMQEAAHETAMSNAR 619
Query: 633 PNMGRPLSIK--FSRELSGTRTSFGASFRSEKESVLSHG----AADATEPATAKHV---- 682
+ RP S + S + +S+G S S + S S + DA+ ++
Sbjct: 620 KSSARPSSARNSVSSPIMTRNSSYGRSPYSRRLSDFSTSDFSLSIDASSYPNYRNEKLAF 679
Query: 683 -----SAIKLYSMVRPDWTYGVCGTICAIIAGAQMPLFALGVSQALVAYY-MDWDTTQRE 736
S +L M P+W Y + G++ ++I G+ FA +S L YY D + ++
Sbjct: 680 KDQANSFWRLAKMNSPEWKYALLGSVGSVICGSLSAFFAYVLSAVLSVYYNPDHEYMIKQ 739
Query: 737 VKKITILFCCAAVITVIVHAIEHLSFGIMGERLTLRVREKMFSAILSNEIGWFDEMDNSS 796
+ K L + ++ + ++H + I+GE LT RVREKM SA+L NE+ WFD+ +N S
Sbjct: 740 IDKYCYLLIGLSSAALVFNTLQHSFWDIVGENLTKRVREKMLSAVLKNEMAWFDQEENES 799
Query: 797 SILASRLESDATLLRTIVVDRSTILIQNFGLVTASFVIAFILNWRITLVVVATYPLIISG 856
+ +A+RL DA +R+ + DR ++++QN L+ + F+L WR+ LV+VA +P++++
Sbjct: 800 ARIAARLALDANNVRSAIGDRISVIVQNTALMLVACTAGFVLQWRLALVLVAVFPVVVAA 859
Query: 857 HISEKLFFQGYGGNLSKAYLKANMLAAEAVSNIRTVAAFCSEDKVLELYSRELVEPSKRS 916
+ +K+F G+ G+L A+ K LA EA++N+RTVAAF SE K++ LY+ L P KR
Sbjct: 860 TVLQKMFMTGFSGDLEAAHAKGTQLAGEAIANVRTVAAFNSEAKIVRLYTANLEPPLKRC 919
Query: 917 FIRGQIAGIFYGISQFFIFSSYGLALWYGSVLMGKELASFKSVMKSFMVLIVTALAMGET 976
F +GQIAG YG++QF +++SY L LWY S L+ ++ F ++ FMVL+V+A ET
Sbjct: 920 FWKGQIAGSGYGVAQFCLYASYALGLWYASWLVKHGISDFSKTIRVFMVLMVSANGAAET 979
Query: 977 LALVPDLLKGNQMAASVFEVLDRKTQVIGDIGEELT---NVEGTIELRGVHFSYPSRPEV 1033
L L PD +KG Q SVFE+LDRKT++ D + + G +EL+ + FSYPSRP++
Sbjct: 980 LTLAPDFIKGGQAMRSVFELLDRKTEIEPDDPDTTPVPDRLRGEVELKHIDFSYPSRPDI 1039
Query: 1034 VIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGK 1076
IF+D +L+ RAGK++ALVG SG GKS+V+SLI RFY+P++G+
Sbjct: 1040 QIFRDLSLRARAGKTLALVGPSGCGKSSVISLIQRFYEPSSGR 1082
|
Auxin efflux transporter that acts as a negative regulator of light signaling to promote hypocotyl elongation. Mediates the accumulation of chlorophyll and anthocyanin, as well as the expression of genes in response to light. Participates directly in auxin efflux and thus regulates the polar (presumably basipetal) auxin transport (from root tips to root elongating zone). Transports also some auxin metabolites such as oxindoleacetic acid and indoleacetaldehyde. Involved in divers auxin-mediated responses including gravitropism, phototropism and lateral root formation. Confers resistance to herbicides such as dicamba, pendimethalin, oryzalin, and monosodium acid methanearsonate (MSMA), but not to herbicides such as glyphosate, atrazine, bentazon and fluazifop-p-butyl. Mediates also resistance to xenobiotics such as cycloheximide and the cytokinin N6-(2-isopentenyl)adenine (2IP). Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9M1Q9|AB21B_ARATH ABC transporter B family member 21 OS=Arabidopsis thaliana GN=ABCB21 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 846 bits (2185), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 449/1056 (42%), Positives = 681/1056 (64%), Gaps = 18/1056 (1%)
Query: 36 QQKRSVSLFKLFAFADFYDYILMSLGSIGACVHGVSVPVFFIFFGKLINIIGLAYLFPKT 95
++ ++V KLFAFAD +D ILM LG+IGA +G+ P+ I FG +I++ G
Sbjct: 58 EKTKTVPFHKLFAFADSFDIILMILGTIGAVGNGLGFPIMTILFGDVIDVFG-QNQNSSD 116
Query: 96 ASHKVAKYSLDFVYLSVAILFSSWIEVSCWMYTGERQAAKMRMAYLRSMLNQDISLFDTE 155
S K+AK +L FVYL + L ++ ++VS WM +GERQA ++R YL+++L QDI+ FD E
Sbjct: 117 VSDKIAKVALKFVYLGLGTLVAALLQVSGWMISGERQAGRIRSLYLQTILRQDIAFFDVE 176
Query: 156 ASTGEVISAITSDIIVVQDALSEKVGNFMHYISRFLGGFIIGFARVWQISLVTLSIVPLI 215
+TGEV+ ++ D +++QDA+ EKVG + +S F+GGF+I F W ++LV +S +PL+
Sbjct: 177 TNTGEVVGRMSGDTVLIQDAMGEKVGKAIQLVSTFIGGFVIAFTEGWLLTLVMVSSIPLL 236
Query: 216 ALAGGMYAYVTIGLIARVRKSYVKAGEIAEEVIGNVRTVQAFAGEDKAVKVYKEALSNTY 275
++G A V + +R + SY KA + E+ +G++RTV +F GE +A+ Y + L + Y
Sbjct: 237 VMSGAALAIVISKMASRGQTSYAKAAVVVEQTVGSIRTVASFTGEKQAISNYNKHLVSAY 296
Query: 276 KYGRKAGLAKGLGLGSMHCVLFLSWSLLVWYVSVVVHKHISNGGESFTTMLNVVIAGLSL 335
+ G G + GLGLG+++ V+F +++L VWY ++ + GG+ + V+ +SL
Sbjct: 297 RAGVFEGASTGLGLGTLNIVIFCTYALAVWYGGKMILEKGYTGGQVLIIIFAVLTGSMSL 356
Query: 336 GQAAPDITAFIRAKAAAYPIFEMIERDTMSKASSKTGRKLDKLSGHIEFKDVSFCYPSRP 395
GQA+P ++AF +AAAY +FE I+R AS TG+ LD + G IE +V+F YP+RP
Sbjct: 357 GQASPCLSAFAAGQAAAYKMFEAIKRKPEIDASDTTGKVLDDIRGDIELNNVNFSYPARP 416
Query: 396 DVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKW 455
+ IF F L I +G VALVG SGSGKSTV+SLIERFY+P SGE+ +DG N+K LKW
Sbjct: 417 EEQIFRGFSLSISSGSTVALVGQSGSGKSTVVSLIERFYDPQSGEVRIDGINLKEFQLKW 476
Query: 456 LRQQIGLVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVG 515
+R +IGLV+QEP LF ++I+ENI YGK++AT+EEI +A +L+ A FI LP+ +T VG
Sbjct: 477 IRSKIGLVSQEPVLFTSSIKENIAYGKENATVEEIRKATELANASKFIDKLPQGLDTMVG 536
Query: 516 ERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVV 575
E G QLSGGQKQRIA++RAI+K+P ILLLDEATSALDAESE VQEALDR+MV RTTVVV
Sbjct: 537 EHGTQLSGGQKQRIAVARAILKDPRILLLDEATSALDAESERIVQEALDRIMVNRTTVVV 596
Query: 576 AHRLSTIRNADVIAVVQGRKIVKTGSHEELISNPNSAYAALVQLQEAASQQSNSSQCPNM 635
AHRLST+RNAD+IAV+ KIV+ GSH EL+ +P AY+ L++LQE Q +S+ +
Sbjct: 597 AHRLSTVRNADMIAVIHQGKIVEKGSHSELLRDPEGAYSQLIRLQEDTKQTEDSTDEQKL 656
Query: 636 GRP------------LSIKFSRELSGTRTSFGASFRSEKESVLSHGAADATEPATAKHVS 683
R S + F A + E++ +T P K VS
Sbjct: 657 SMESMKRSSLRKSSLSRSLSKRSSSFSMFGFPAGIDTNNEAIPEKDIKVST-PIKEKKVS 715
Query: 684 AIKLYSMVRPDWTYGVCGTICAIIAGAQMPLFALGVSQALVAYYMDWDTTQREVKKITIL 743
++ ++ +P+ + G+I A++ G +P+F + +S + A++ + + + + I+
Sbjct: 716 FFRVAALNKPEIPMLILGSIAAVLNGVILPIFGILISSVIKAFFKPPEQLKSDTRFWAII 775
Query: 744 FCCAAVITVIVHAIEHLSFGIMGERLTLRVREKMFSAILSNEIGWFDEMDNSSSILASRL 803
F V +++V + + F I G +L R+R F ++ E+GWFDE +NSS + +RL
Sbjct: 776 FMLLGVASMVVFPAQTIFFSIAGCKLVQRIRSMCFEKVVRMEVGWFDETENSSGAIGARL 835
Query: 804 ESDATLLRTIVVDRSTILIQNFGLVTASFVIAFILNWRITLVVVATYPLI-ISGHISEKL 862
+DA +R +V D +QN VTA VIAF+ +W++ +V+A PLI ++G+I K
Sbjct: 836 SADAATVRGLVGDALAQTVQNLASVTAGLVIAFVASWQLAFIVLAMLPLIGLNGYIYMK- 894
Query: 863 FFQGYGGNLSKAYLKANMLAAEAVSNIRTVAAFCSEDKVLELYSRELVEPSKRSFIRGQI 922
F G+ + + Y +A+ +A +AV +IRTVA+FC+E+KV+++Y ++ P + +G +
Sbjct: 895 FMVGFSADAKRMYEEASQVANDAVGSIRTVASFCAEEKVMKMYKKKCEGPMRTGIRQGIV 954
Query: 923 AGIFYGISQFFIFSSYGLALWYGSVLMGKELASFKSVMKSFMVLIVTALAMGETLALVPD 982
+GI +G+S F +FSSY + + G+ L+ +F SV + F L + A+A+ ++ +L PD
Sbjct: 955 SGIGFGVSFFVLFSSYAASFYAGARLVDDGKTTFDSVFRVFFALTMAAVAISQSSSLSPD 1014
Query: 983 LLKGNQMAASVFEVLDRKTQV--IGDIGEELTNVEGTIELRGVHFSYPSRPEVVIFKDFN 1040
K + AAS+F V+DR++++ + G L NV+G IELR + F YPSRP+V IF+D
Sbjct: 1015 SSKASNAAASIFAVIDRESKIDPSDESGRVLDNVKGDIELRHISFKYPSRPDVQIFQDLC 1074
Query: 1041 LKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGK 1076
L +RAGK++ALVG+SGSGKSTV++L+ RFYDP +G+
Sbjct: 1075 LSIRAGKTIALVGESGSGKSTVIALLQRFYDPDSGQ 1110
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|O80725|AB4B_ARATH ABC transporter B family member 4 OS=Arabidopsis thaliana GN=ABCB4 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 838 bits (2166), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 455/1060 (42%), Positives = 677/1060 (63%), Gaps = 27/1060 (2%)
Query: 40 SVSLFKLFAFADFYDYILMSLGSIGACVHGVSVPVFFIFFGKLINIIGLAYLFPKTASHK 99
+V +KLFAFAD +D++LM LG++G+ +G+ P+ + FG LI+ G + K
Sbjct: 45 TVPFYKLFAFADSFDFLLMILGTLGSIGNGLGFPLMTLLFGDLIDAFGENQ---TNTTDK 101
Query: 100 VAKYSLDFVYLSVAILFSSWIEVSCWMYTGERQAAKMRMAYLRSMLNQDISLFDTEASTG 159
V+K +L FV+L + ++++++S WM +GERQAA++R YL+++L QDI+ FD + +TG
Sbjct: 102 VSKVALKFVWLGIGTFAAAFLQLSGWMISGERQAARIRSLYLKTILRQDIAFFDIDTNTG 161
Query: 160 EVISAITSDIIVVQDALSEKVGNFMHYISRFLGGFIIGFARVWQISLVTLSIVPLIALAG 219
EV+ ++ D +++QDA+ EKVG + ++ F+GGF+I F R W ++LV LS +PL+ +AG
Sbjct: 162 EVVGRMSGDTVLIQDAMGEKVGKAIQLLATFVGGFVIAFVRGWLLTLVMLSSIPLLVMAG 221
Query: 220 GMYAYVTIGLIARVRKSYVKAGEIAEEVIGNVRTVQAFAGEDKAVKVYKEALSNTYKYGR 279
+ A V +R + +Y KA + E+ IG++RTV +F GE +A+ Y + L YK G
Sbjct: 222 ALLAIVIAKTASRGQTAYAKAATVVEQTIGSIRTVASFTGEKQAISNYNKHLVTAYKAGV 281
Query: 280 KAGLAKGLGLGSMHCVLFLSWSLLVWYVSVVVHKHISNGGESFTTMLNVVIAGLSLGQAA 339
G + GLGLG++ V+F S++L VWY ++ GG+ ++ V+ +SLGQ +
Sbjct: 282 IEGGSTGLGLGTLFLVVFCSYALAVWYGGKLILDKGYTGGQVLNIIIAVLTGSMSLGQTS 341
Query: 340 PDITAFIRAKAAAYPIFEMIERDTMSKASSKTGRKLDKLSGHIEFKDVSFCYPSRPDVAI 399
P ++AF +AAAY +FE IER + S G+ LD + G IE KDV F YP+RPD I
Sbjct: 342 PCLSAFAAGQAAAYKMFETIERRPNIDSYSTNGKVLDDIKGDIELKDVYFTYPARPDEQI 401
Query: 400 FDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQ 459
F F L I +G VALVG SGSGKSTV+SLIERFY+P +G++L+DG N+K LKW+R +
Sbjct: 402 FRGFSLFISSGTTVALVGQSGSGKSTVVSLIERFYDPQAGDVLIDGINLKEFQLKWIRSK 461
Query: 460 IGLVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGI 519
IGLV+QEP LF +I++NI YGK+DAT EEI AA+L+ A F+ LP+ +T VGE G
Sbjct: 462 IGLVSQEPVLFTASIKDNIAYGKEDATTEEIKAAAELANASKFVDKLPQGLDTMVGEHGT 521
Query: 520 QLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRL 579
QLSGGQKQRIA++RAI+K+P ILLLDEATSALDAESE VQEALDR+MV RTTVVVAHRL
Sbjct: 522 QLSGGQKQRIAVARAILKDPRILLLDEATSALDAESERVVQEALDRIMVNRTTVVVAHRL 581
Query: 580 STIRNADVIAVVQGRKIVKTGSHEELISNPNSAYAALVQLQE-------AASQQSNSS-- 630
ST+RNAD+IAV+ KIV+ GSH EL+ +P AY+ L++LQE AA +Q SS
Sbjct: 582 STVRNADMIAVIHQGKIVEKGSHTELLKDPEGAYSQLIRLQEEKKSDENAAEEQKMSSIE 641
Query: 631 -------QCPNMGRPLSIKFSRELSGTRTS---FGASFRSEKESVLSHGAADATEPAT-A 679
+ ++GR LS S + +R S FG + V D T+P T
Sbjct: 642 SFKQSSLRKSSLGRSLSKGGSSRGNSSRHSFNMFGFPAGIDGNVVQDQEEDDTTQPKTEP 701
Query: 680 KHVSAIKLYSMVRPDWTYGVCGTICAIIAGAQMPLFALGVSQALVAYYMDWDTTQREVKK 739
K VS ++ ++ +P+ + G+I A G +P+F + +S + A++ + +
Sbjct: 702 KKVSIFRIAALNKPEIPVLILGSISAAANGVILPIFGILISSVIKAFFQPPKKLKEDTSF 761
Query: 740 ITILFCCAAVITVIVHAIEHLSFGIMGERLTLRVREKMFSAILSNEIGWFDEMDNSSSIL 799
I+F ++I + + F I G +L R+R F ++ E+GWFDE +NSS +
Sbjct: 762 WAIIFMVLGFASIIAYPAQTFFFAIAGCKLVQRIRSMCFEKVVHMEVGWFDEPENSSGTI 821
Query: 800 ASRLESDATLLRTIVVDRSTILIQNFGLVTASFVIAFILNWRITLVVVATYPLI-ISGHI 858
+RL +DA +R +V D +QN + A +IAF+ W++ VV+A PLI ++G +
Sbjct: 822 GARLSADAATIRGLVGDSLAQTVQNLSSILAGLIIAFLACWQLAFVVLAMLPLIALNGFL 881
Query: 859 SEKLFFQGYGGNLSKAYLKANMLAAEAVSNIRTVAAFCSEDKVLELYSRELVEPSKRSFI 918
K F +G+ + K Y +A+ +A +AV +IRTVA+FC+EDKV+ +YS++ P K
Sbjct: 882 YMK-FMKGFSADAKKMYGEASQVANDAVGSIRTVASFCAEDKVMNMYSKKCEGPMKNGIR 940
Query: 919 RGQIAGIFYGISQFFIFSSYGLALWYGSVLMGKELASFKSVMKSFMVLIVTALAMGETLA 978
+G ++GI +G S F +FSSY + + G+ L+ +F SV + F L + A+A+ ++ +
Sbjct: 941 QGIVSGIGFGFSFFVLFSSYAASFYVGARLVDDGKTTFDSVFRVFFALTMAAMAISQSSS 1000
Query: 979 LVPDLLKGNQMAASVFEVLDRKTQVIGDI--GEELTNVEGTIELRGVHFSYPSRPEVVIF 1036
L PD K + AAS+F ++DR++++ + G L NV+G IELR V F YP+RP+V IF
Sbjct: 1001 LSPDSSKADVAAASIFAIMDRESKIDPSVESGRVLDNVKGDIELRHVSFKYPARPDVQIF 1060
Query: 1037 KDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGK 1076
+D L +RAGK++ALVG+SGSGKSTV++L+ RFYDP +G+
Sbjct: 1061 QDLCLSIRAGKTVALVGESGSGKSTVIALLQRFYDPDSGE 1100
|
Auxin influx transporter that mediates the transport of auxin in roots. Contributes to the basipetal transport in hypocotyls and root tips by establishing an auxin uptake sink in the root cap. Confers sensitivity to 1-N-naphthylphthalamic acid (NPA). Regulates the root elongation, the initiation of lateral roots and the development of root hairs. Can transports IAA, indole-3-propionic acid, NPA syringic acid, vanillic acid and some auxin metabolites, but not 2,4-D and 1-naphthaleneacetic acid. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FWX7|AB11B_ARATH ABC transporter B family member 11 OS=Arabidopsis thaliana GN=ABCB11 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 838 bits (2164), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 454/1059 (42%), Positives = 673/1059 (63%), Gaps = 32/1059 (3%)
Query: 40 SVSLFKLFAFADFYDYILMSLGSIGACVHGVSVPVFFIFFGKLINIIGLAYLFPKTASHK 99
+V +KLFAFAD D +LM GSIGA +G+S+P + FG LI+ G K ++K
Sbjct: 40 TVPFYKLFAFADSSDVLLMICGSIGAIGNGMSLPFMTLLFGDLIDSFG------KNQNNK 93
Query: 100 -----VAKYSLDFVYLSVAILFSSWIEVSCWMYTGERQAAKMRMAYLRSMLNQDISLFDT 154
V+K L FVYL + L +++++V+CWM TGERQAA++R YL+++L QDI FD
Sbjct: 94 DIVDVVSKVCLKFVYLGLGTLGAAFLQVACWMITGERQAARIRSTYLKTILRQDIGFFDV 153
Query: 155 EASTGEVISAITSDIIVVQDALSEKVGNFMHYISRFLGGFIIGFARVWQISLVTLSIVPL 214
E +TGEV+ ++ D +++QDA+ EKVG F+ +S F+GGF++ F + W ++LV L+ +PL
Sbjct: 154 ETNTGEVVGRMSGDTVLIQDAMGEKVGKFIQLVSTFVGGFVLAFIKGWLLTLVMLTSIPL 213
Query: 215 IALAGGMYAYVTIGLIARVRKSYVKAGEIAEEVIGNVRTVQAFAGEDKAVKVYKEALSNT 274
+A+AG A + +R + +Y KA + E+ IG++RTV +F GE +A+ YK+ +++
Sbjct: 214 LAMAGAAMALIVTRASSRGQAAYAKAATVVEQTIGSIRTVASFTGEKQAINSYKKFITSA 273
Query: 275 YKYGRKAGLAKGLGLGSMHCVLFLSWSLLVWYVSVVVHKHISNGGESFTTMLNVVIAGLS 334
YK + G + GLGLG M V F S++L +W+ ++ + GG ++ VV +S
Sbjct: 274 YKSSIQQGFSTGLGLGVMFFVFFSSYALAIWFGGKMILEKGYTGGAVINVIIIVVAGSMS 333
Query: 335 LGQAAPDITAFIRAKAAAYPIFEMIERDTMSKASSKTGRKLDKLSGHIEFKDVSFCYPSR 394
LGQ +P +TAF +AAAY +FE I+R + A G+ L+ + G IE KDV F YP+R
Sbjct: 334 LGQTSPCVTAFAAGQAAAYKMFETIKRKPLIDAYDVNGKVLEDIRGDIELKDVHFSYPAR 393
Query: 395 PDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLK 454
PD IFD F L IP+G ALVG SGSGKSTVISLIERFY+P SG +L+DG N+K LK
Sbjct: 394 PDEEIFDGFSLFIPSGATAALVGESGSGKSTVISLIERFYDPKSGAVLIDGVNLKEFQLK 453
Query: 455 WLRQQIGLVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQV 514
W+R +IGLV+QEP LF+++I ENI YGK++AT+EEI A +L+ A FI LP+ +T V
Sbjct: 454 WIRSKIGLVSQEPVLFSSSIMENIAYGKENATVEEIKAATELANAAKFIDKLPQGLDTMV 513
Query: 515 GERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVV 574
GE G QLSGGQKQRIAI+RAI+K+P ILLLDEATSALDAESE VQEALDRVMV RTTV+
Sbjct: 514 GEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDRVMVNRTTVI 573
Query: 575 VAHRLSTIRNADVIAVVQGRKIVKTGSHEELISNPNSAYAALVQLQEAASQQSNSSQCPN 634
VAHRLST+RNAD+IAV+ K+V+ GSH EL+ + AY+ L++LQE ++ +S+ +
Sbjct: 574 VAHRLSTVRNADMIAVIHRGKMVEKGSHSELLKDSEGAYSQLIRLQE-INKDVKTSELSS 632
Query: 635 MGRPLSIKFSRELSGTRTSFGASFRSEKESVL---------SHGA-ADATEPATAKH--- 681
+ + + GT +S G S R +VL SH A E TA
Sbjct: 633 GSSFRNSNLKKSMEGT-SSVGNSSRHHSLNVLGLTTGLDLGSHSQRAGQDETGTASQEPL 691
Query: 682 --VSAIKLYSMVRPDWTYGVCGTICAIIAGAQMPLFALGVSQALVAYYMDWDTTQREVKK 739
VS ++ ++ +P+ + GT+ A I GA PLF + +S+ + A++ +R+ +
Sbjct: 692 PKVSLTRIAALNKPEIPVLLLGTVAAAINGAIFPLFGILISRVIEAFFKPAHELKRDSRF 751
Query: 740 ITILFCCAAVITVIVHAIEHLSFGIMGERLTLRVREKMFSAILSNEIGWFDEMDNSSSIL 799
I+F V ++IV + F + G +L R+R F + E+ WFDE NSS +
Sbjct: 752 WAIIFVALGVTSLIVSPTQMYLFAVAGGKLIRRIRSMCFEKAVHMEVAWFDEPQNSSGTM 811
Query: 800 ASRLESDATLLRTIVVDRSTILIQNFGLVTASFVIAFILNWRITLVVVATYPLI-ISGHI 858
+RL +DATL+R +V D ++ +QN + +IAF +W + L+++ PLI I+G +
Sbjct: 812 GARLSADATLIRALVGDALSLAVQNVASAASGLIIAFTASWELALIILVMLPLIGINGFV 871
Query: 859 SEKLFFQGYGGNLSKAYLKANMLAAEAVSNIRTVAAFCSEDKVLELYSRELVEPSKRSFI 918
K F +G+ + Y +A+ +A +AV +IRTVA+FC+E+KV+++Y ++ P K
Sbjct: 872 QVK-FMKGFSADAKSKYEEASQVANDAVGSIRTVASFCAEEKVMQMYKKQCEGPIKDGIK 930
Query: 919 RGQIAGIFYGISQFFIFSSYGLALWYGSVLMGKELASFKSVMKSFMVLIVTALAMGETLA 978
+G I+G+ +G S F +F Y + + G+ L+ +F +V + F L + A+ + ++
Sbjct: 931 QGFISGLGFGFSFFILFCVYATSFYAGARLVEDGKTTFNNVFQVFFALTMAAIGISQSST 990
Query: 979 LVPDLLKGNQMAASVFEVLDRKTQVIG--DIGEELTNVEGTIELRGVHFSYPSRPEVVIF 1036
PD K AAS+F ++DRK+++ + G L NV+G IELR + F+YP+RP++ IF
Sbjct: 991 FAPDSSKAKVAAASIFAIIDRKSKIDSSDETGTVLENVKGDIELRHLSFTYPARPDIQIF 1050
Query: 1037 KDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAG 1075
+D L +RAGK++ALVG+SGSGKSTV+SL+ RFYDP +G
Sbjct: 1051 RDLCLTIRAGKTVALVGESGSGKSTVISLLQRFYDPDSG 1089
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FWX8|AB12B_ARATH ABC transporter B family member 12 OS=Arabidopsis thaliana GN=ABCB12 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 837 bits (2162), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 453/1093 (41%), Positives = 687/1093 (62%), Gaps = 40/1093 (3%)
Query: 15 NNSSNNNNNNNTEDQESSKKQQQKRSVSLFKLFAFADFYDYILMSLGSIGACVHGVSVPV 74
N ++ + + +SK ++ ++V L+KLFAFAD +D LM GS+GA +GV +P+
Sbjct: 2 NRDGAGEGDSVSHEHSTSKTDEKAKTVPLYKLFAFADSFDVFLMICGSLGAIGNGVCLPL 61
Query: 75 FFIFFGKLINIIGLAYLFPKTASHK-----VAKYSLDFVYLSVAILFSSWIEVSCWMYTG 129
+ FG LI+ G K ++K V+K L FVYL + L +++++V+CWM TG
Sbjct: 62 MTLLFGDLIDSFG------KNQNNKDIVDVVSKVCLKFVYLGLGRLGAAFLQVACWMITG 115
Query: 130 ERQAAKMRMAYLRSMLNQDISLFDTEASTGEVISAITSDIIVVQDALSEKVGNFMHYISR 189
ERQAAK+R YL+++L QDI FD E +TGEV+ ++ D + +QDA+ EKVG F+ +S
Sbjct: 116 ERQAAKIRSNYLKTILRQDIGFFDVETNTGEVVGRMSGDTVHIQDAMGEKVGKFIQLVST 175
Query: 190 FLGGFIIGFARVWQISLVTLSIVPLIALAGGMYAYVTIGLIARVRKSYVKAGEIAEEVIG 249
F+GGF + FA+ W ++LV L+ +P +A+AG A + +R + +Y KA + E+ IG
Sbjct: 176 FVGGFALAFAKGWLLTLVMLTSIPFLAMAGAAMALLVTRASSRGQAAYAKAATVVEQTIG 235
Query: 250 NVRTVQAFAGEDKAVKVYKEALSNTYKYGRKAGLAKGLGLGSMHCVLFLSWSLLVWYVSV 309
++RTV +F GE +A+ YK+ +++ YK + G + GLGLG M V F S++L +W+
Sbjct: 236 SIRTVASFTGEKQAINSYKKYITSAYKSSIQQGFSTGLGLGVMIYVFFSSYALAIWFGGK 295
Query: 310 VVHKHISNGGESFTTMLNVVIAGLSLGQAAPDITAFIRAKAAAYPIFEMIERDTMSKASS 369
++ + GG ++ VV +SLGQ +P +TAF +AAAY +FE I+R + A
Sbjct: 296 MILEKGYTGGSVINVIIIVVAGSMSLGQTSPCVTAFAAGQAAAYKMFETIKRKPLIDAYD 355
Query: 370 KTGRKLDKLSGHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISL 429
G+ L + G IE KDV F YP+RPD IFD F L IP+G ALVG SGSGKSTVI+L
Sbjct: 356 VNGKVLGDIRGDIELKDVHFSYPARPDEEIFDGFSLFIPSGATAALVGESGSGKSTVINL 415
Query: 430 IERFYEPLSGEILLDGNNIKGLDLKWLRQQIGLVNQEPALFATTIRENILYGKDDATMEE 489
IERFY+P +GE+L+DG N+K LKW+R +IGLV QEP LF+++I ENI YGK++AT++E
Sbjct: 416 IERFYDPKAGEVLIDGINLKEFQLKWIRSKIGLVCQEPVLFSSSIMENIAYGKENATLQE 475
Query: 490 ITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATS 549
I A +L+ A FI+NLP+ +T+VGE G QLSGGQKQRIAI+RAI+K+P +LLLDEATS
Sbjct: 476 IKVATELANAAKFINNLPQGLDTKVGEHGTQLSGGQKQRIAIARAILKDPRVLLLDEATS 535
Query: 550 ALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRNADVIAVVQGRKIVKTGSHEELISNP 609
ALD ESE VQEALDRVMV RTTVVVAHRLST+RNAD+IAV+ K+V+ GSH EL+ +
Sbjct: 536 ALDTESERVVQEALDRVMVNRTTVVVAHRLSTVRNADMIAVIHSGKMVEKGSHSELLKDS 595
Query: 610 NSAYAALVQLQEAASQQSNSSQCPNMG-----RPLSIKFSRE---LSGTRTSFGASFRSE 661
AY+ L++ QE + + ++ +M R ++ SRE +SG +SFG S R
Sbjct: 596 VGAYSQLIRCQEI--NKGHDAKPSDMASGSSFRNSNLNISREGSVISGGTSSFGNSSRHH 653
Query: 662 KESV--------LSHGAADATEPATA-------KHVSAIKLYSMVRPDWTYGVCGTICAI 706
+V L G+ + T + VS ++ ++ +P+ + GT+ A
Sbjct: 654 SLNVLGLFAGLDLGSGSQRVGQEETGTTSQEPLRKVSLTRIAALNKPEIPVLLLGTVVAA 713
Query: 707 IAGAQMPLFALGVSQALVAYYMDWDTTQREVKKITILFCCAAVITVIVHAIEHLSFGIMG 766
I GA PLF + +S+ + A++ D +++ + I+F V ++IV + F + G
Sbjct: 714 INGAIFPLFGILISRVIEAFFKPADQLKKDSRFWAIIFVALGVTSLIVSPSQMYLFAVAG 773
Query: 767 ERLTLRVREKMFSAILSNEIGWFDEMDNSSSILASRLESDATLLRTIVVDRSTILIQNFG 826
+L R++ F + E+ WFDE +NSS + +RL +DA L+R +V D ++ +QN
Sbjct: 774 GKLIRRIQSMCFEKAVHMEVSWFDEPENSSGTMGARLSTDAALIRALVGDALSLAVQNAA 833
Query: 827 LVTASFVIAFILNWRITLVVVATYPLI-ISGHISEKLFFQGYGGNLSKAYLKANMLAAEA 885
+ +IAF +W + L+++ PLI I+G + K F +G+ + Y +A+ +A +A
Sbjct: 834 SAASGLIIAFTASWELALIILVMLPLIGINGFLQVK-FMKGFSADAKSKYEEASQVANDA 892
Query: 886 VSNIRTVAAFCSEDKVLELYSRELVEPSKRSFIRGQIAGIFYGISQFFIFSSYGLALWYG 945
V +IRTVA+FC+E+KV+++Y+++ P K +G I+G+ +G S F +F Y + +
Sbjct: 893 VGSIRTVASFCAEEKVMQMYNKQCEGPIKDGVKQGFISGLGFGFSFFILFCVYATSFYAA 952
Query: 946 SVLMGKELASFKSVMKSFMVLIVTALAMGETLALVPDLLKGNQMAASVFEVLDRKTQVIG 1005
+ L+ +F V + F L + A+ + ++ PD K AAS+F ++DRK+++
Sbjct: 953 ARLVEDGKTTFIDVFQVFFALTMAAIGISQSSTFAPDSSKAKVAAASIFAIIDRKSKIDS 1012
Query: 1006 --DIGEELTNVEGTIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVL 1063
+ G L NV+G IELR + F+YP+RP + IF+D L +RAGK++ALVG+SGSGKSTV+
Sbjct: 1013 SDETGTVLENVKGDIELRHLSFTYPARPGIQIFRDLCLTIRAGKTVALVGESGSGKSTVI 1072
Query: 1064 SLILRFYDPTAGK 1076
SL+ RFYDP +G+
Sbjct: 1073 SLLQRFYDPDSGQ 1085
|
Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1077 | ||||||
| 6671365 | 1249 | P-glycoprotein [Gossypium hirsutum] | 0.985 | 0.849 | 0.820 | 0.0 | |
| 225427157 | 1243 | PREDICTED: ABC transporter B family memb | 0.980 | 0.849 | 0.819 | 0.0 | |
| 224074303 | 1250 | multidrug/pheromone exporter, MDR family | 0.983 | 0.847 | 0.819 | 0.0 | |
| 255573463 | 1156 | multidrug resistance protein 1, 2, putat | 0.979 | 0.912 | 0.814 | 0.0 | |
| 356529728 | 1245 | PREDICTED: ABC transporter B family memb | 0.972 | 0.840 | 0.813 | 0.0 | |
| 297803510 | 1233 | multidrug resistance protein 2 [Arabidop | 0.962 | 0.841 | 0.806 | 0.0 | |
| 2108252 | 1233 | P-glycoprotein-2 [Arabidopsis thaliana] | 0.962 | 0.841 | 0.807 | 0.0 | |
| 20466380 | 1233 | P-glycoprotein-2 [Arabidopsis thaliana] | 0.962 | 0.841 | 0.807 | 0.0 | |
| 356497653 | 1246 | PREDICTED: ABC transporter B family memb | 0.977 | 0.845 | 0.810 | 0.0 | |
| 79487035 | 1273 | P-glycoprotein 2 [Arabidopsis thaliana] | 0.985 | 0.833 | 0.792 | 0.0 |
| >gi|6671365|gb|AAF23176.1|AF216497_1 P-glycoprotein [Gossypium hirsutum] | Back alignment and taxonomy information |
|---|
Score = 1828 bits (4735), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 881/1074 (82%), Positives = 984/1074 (91%), Gaps = 13/1074 (1%)
Query: 3 TPAVGSFPVNDYNNSSNNNNNNNTEDQESSKKQQQKRSVSLFKLFAFADFYDYILMSLGS 62
TP+ GSF + + +D +++KK++++R V L KLF+FADFYD++LM LGS
Sbjct: 2 TPSAGSF------------SGDRDDDGDATKKKKKQRKVPLLKLFSFADFYDHVLMGLGS 49
Query: 63 IGACVHGVSVPVFFIFFGKLINIIGLAYLFPKTASHKVAKYSLDFVYLSVAILFSSWIEV 122
+GACVHG SVPVFFIFFGKLINIIG+AYLFPK ASHKVAKYSLDFVYLSVAILFSSWIEV
Sbjct: 50 LGACVHGASVPVFFIFFGKLINIIGMAYLFPKEASHKVAKYSLDFVYLSVAILFSSWIEV 109
Query: 123 SCWMYTGERQAAKMRMAYLRSMLNQDISLFDTEASTGEVISAITSDIIVVQDALSEKVGN 182
+CWM+TGERQAAKMRMAYL+SMLNQDISLFDTEASTGEVISAITSDIIVVQDALSEKVGN
Sbjct: 110 ACWMHTGERQAAKMRMAYLKSMLNQDISLFDTEASTGEVISAITSDIIVVQDALSEKVGN 169
Query: 183 FMHYISRFLGGFIIGFARVWQISLVTLSIVPLIALAGGMYAYVTIGLIARVRKSYVKAGE 242
FMHYISRF+ GF IGFARVWQISLVTLSIVPLIALAGG+YAYV GLIARVR SYVKAGE
Sbjct: 170 FMHYISRFIAGFSIGFARVWQISLVTLSIVPLIALAGGIYAYVATGLIARVRNSYVKAGE 229
Query: 243 IAEEVIGNVRTVQAFAGEDKAVKVYKEALSNTYKYGRKAGLAKGLGLGSMHCVLFLSWSL 302
IAEEVIGNVRTVQAFAGE++AVK YK+AL NTY YG+KAGL KGLGLGS+HCVLF+SW+L
Sbjct: 230 IAEEVIGNVRTVQAFAGEERAVKSYKDALMNTYTYGKKAGLTKGLGLGSLHCVLFVSWAL 289
Query: 303 LVWYVSVVVHKHISNGGESFTTMLNVVIAGLSLGQAAPDITAFIRAKAAAYPIFEMIERD 362
LVW+ S+VVHK+I+NGG+SFTTMLNVVI+GLSLGQAAPDI+AFIRA+AAAYPIFEMIER+
Sbjct: 290 LVWFTSIVVHKNIANGGDSFTTMLNVVISGLSLGQAAPDISAFIRARAAAYPIFEMIERN 349
Query: 363 TMSKASSKTGRKLDKLSGHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSG 422
T+SK SSKTGRKL K+ G+IE K+VSF YPSRPDV IFD+FCL+IP GKIVALVGGSGSG
Sbjct: 350 TVSKTSSKTGRKLSKVEGNIELKNVSFSYPSRPDVVIFDRFCLNIPTGKIVALVGGSGSG 409
Query: 423 KSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIGLVNQEPALFATTIRENILYGK 482
KSTVISLIERFYEPL+GEILLDGNNIKGLDLKWLRQQIGLVNQEPALFATTIRENILYGK
Sbjct: 410 KSTVISLIERFYEPLAGEILLDGNNIKGLDLKWLRQQIGLVNQEPALFATTIRENILYGK 469
Query: 483 DDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSIL 542
DDAT++EITRAAKLSEA++FI+NLP+RFETQVGERGIQLSGGQKQRIAISRAIVKNP IL
Sbjct: 470 DDATVDEITRAAKLSEAIAFINNLPDRFETQVGERGIQLSGGQKQRIAISRAIVKNPPIL 529
Query: 543 LLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRNADVIAVVQGRKIVKTGSH 602
LLDEATSALDAESE SVQEALDRVMVGRTTVVVAHRLSTIRNADVIAVVQ KIV+TG+H
Sbjct: 530 LLDEATSALDAESEKSVQEALDRVMVGRTTVVVAHRLSTIRNADVIAVVQNGKIVETGTH 589
Query: 603 EELISNPNSAYAALVQLQEAASQQSNSSQCPNMGRPLSIKFSRELSGTRTSFGASFRSEK 662
+ELISNPNS Y++LVQ QE + Q SQ P + RPLS+ +SRELS TRTSFGASFRSE+
Sbjct: 590 DELISNPNSTYSSLVQHQETSPLQRYPSQGPTLSRPLSVSYSRELSRTRTSFGASFRSER 649
Query: 663 ESVLSHGAADATEPATAKHVSAIKLYSMVRPDWTYGVCGTICAIIAGAQMPLFALGVSQA 722
+SV S AD + +VS +LYSM+ PDW YG GT+ A+IAGAQMPLFALGVSQA
Sbjct: 650 DSV-SRAGADGIDAGKQPYVSPGRLYSMIGPDWYYGFFGTVTALIAGAQMPLFALGVSQA 708
Query: 723 LVAYYMDWDTTQREVKKITILFCCAAVITVIVHAIEHLSFGIMGERLTLRVREKMFSAIL 782
LVAYYMDW+TT EVKKI ILFCCA+VITVIVHAIEHL FGIMGERLTLRVRE MFSAIL
Sbjct: 709 LVAYYMDWETTCHEVKKIAILFCCASVITVIVHAIEHLCFGIMGERLTLRVREGMFSAIL 768
Query: 783 SNEIGWFDEMDNSSSILASRLESDATLLRTIVVDRSTILIQNFGLVTASFVIAFILNWRI 842
NEIGWFD+++N+SS+LASRLE+DAT LR +VVDR++ILIQN GLV A+F+IAFILNWRI
Sbjct: 769 KNEIGWFDDLNNASSMLASRLETDATFLRGVVVDRTSILIQNVGLVIAAFIIAFILNWRI 828
Query: 843 TLVVVATYPLIISGHISEKLFFQGYGGNLSKAYLKANMLAAEAVSNIRTVAAFCSEDKVL 902
TL+++AT+PLIISGHISEKLF QGYGGNLSKAYLKANM+A EAVSN+RTVAAFC+E+K+L
Sbjct: 829 TLIILATFPLIISGHISEKLFMQGYGGNLSKAYLKANMIAGEAVSNMRTVAAFCAEEKIL 888
Query: 903 ELYSRELVEPSKRSFIRGQIAGIFYGISQFFIFSSYGLALWYGSVLMGKELASFKSVMKS 962
+LY+REL+EPS+RSF RGQIAGIFYGISQFFIFSSYGLALWYGSVLMGKELASFKSVMKS
Sbjct: 889 DLYARELIEPSERSFKRGQIAGIFYGISQFFIFSSYGLALWYGSVLMGKELASFKSVMKS 948
Query: 963 FMVLIVTALAMGETLALVPDLLKGNQMAASVFEVLDRKTQVIGDIGEELTNVEGTIELRG 1022
FMVLIVTALAMGETLALVPDLLKGNQM ASVFE++DRKTQV+GD GEELTNVEGTIEL+G
Sbjct: 949 FMVLIVTALAMGETLALVPDLLKGNQMVASVFEIMDRKTQVVGDAGEELTNVEGTIELKG 1008
Query: 1023 VHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGK 1076
VHFSYPSRP+VVIFKDF+LKVR+GKSMALVGQSGSGKS+VL+LILRFYDPT+GK
Sbjct: 1009 VHFSYPSRPDVVIFKDFDLKVRSGKSMALVGQSGSGKSSVLALILRFYDPTSGK 1062
|
Source: Gossypium hirsutum Species: Gossypium hirsutum Genus: Gossypium Family: Malvaceae Order: Malvales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225427157|ref|XP_002277547.1| PREDICTED: ABC transporter B family member 2 [Vitis vinifera] gi|297742073|emb|CBI33860.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1802 bits (4668), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 866/1057 (81%), Positives = 967/1057 (91%), Gaps = 1/1057 (0%)
Query: 20 NNNNNNTEDQESSKKQQQKRSVSLFKLFAFADFYDYILMSLGSIGACVHGVSVPVFFIFF 79
+ N + ++ ++ ++ R V L KLFAFAD YD LM++GS+GAC+HG SVPVFFIFF
Sbjct: 2 DGPNPFSGQKKEGEEGKKPRRVPLLKLFAFADLYDCFLMAVGSVGACIHGASVPVFFIFF 61
Query: 80 GKLINIIGLAYLFPKTASHKVAKYSLDFVYLSVAILFSSWIEVSCWMYTGERQAAKMRMA 139
GKLI+IIGLAYLFP ASHKVAKYSLDFVYLS+ ILFSSW EV+CWM+TGERQAAKMRMA
Sbjct: 62 GKLIDIIGLAYLFPAAASHKVAKYSLDFVYLSLVILFSSWAEVACWMHTGERQAAKMRMA 121
Query: 140 YLRSMLNQDISLFDTEASTGEVISAITSDIIVVQDALSEKVGNFMHYISRFLGGFIIGFA 199
Y+RSMLNQDISLFDTEA+TGEVISAITSDIIVVQDALSEKVGNFMHYISRF+ GF IGF
Sbjct: 122 YVRSMLNQDISLFDTEATTGEVISAITSDIIVVQDALSEKVGNFMHYISRFIAGFAIGFI 181
Query: 200 RVWQISLVTLSIVPLIALAGGMYAYVTIGLIARVRKSYVKAGEIAEEVIGNVRTVQAFAG 259
RVWQISLVTL+IVPLIA+AGG+YAY+ GLIARVRKSYVKAGEIAEEVIGNVRTVQAFAG
Sbjct: 182 RVWQISLVTLAIVPLIAIAGGVYAYIATGLIARVRKSYVKAGEIAEEVIGNVRTVQAFAG 241
Query: 260 EDKAVKVYKEALSNTYKYGRKAGLAKGLGLGSMHCVLFLSWSLLVWYVSVVVHKHISNGG 319
E+KAVK+YK ALSNTY YGRKAGLAKGLGLGSMHCVLFLSW+LLVW+ SVVVHK+I+NGG
Sbjct: 242 EEKAVKLYKTALSNTYIYGRKAGLAKGLGLGSMHCVLFLSWALLVWFTSVVVHKNIANGG 301
Query: 320 ESFTTMLNVVIAGLSLGQAAPDITAFIRAKAAAYPIFEMIERDTMSKASSKTGRKLDKLS 379
ESFTTMLNVVIAGLSLGQAAPDI+AFIRAKA+AYPIFEMIER+T+S +SKTGR+L KL
Sbjct: 302 ESFTTMLNVVIAGLSLGQAAPDISAFIRAKASAYPIFEMIERNTISNTNSKTGRQLHKLE 361
Query: 380 GHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSG 439
GHI+F+D+SF YPSRPD+ IF+K C DIP+GKIVALVGGSGSGKSTVISLIERFYEPL+G
Sbjct: 362 GHIQFRDISFSYPSRPDILIFNKLCFDIPSGKIVALVGGSGSGKSTVISLIERFYEPLAG 421
Query: 440 EILLDGNNIKGLDLKWLRQQIGLVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEA 499
EILLDGN+I+ LDL+WLRQQIGLVNQEPALFAT+IRENILYGKDDAT++EITRAAKLSEA
Sbjct: 422 EILLDGNDIRQLDLQWLRQQIGLVNQEPALFATSIRENILYGKDDATLDEITRAAKLSEA 481
Query: 500 MSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSV 559
+SFI+NLP+R+ETQVGERGIQLSGGQKQRIAI+RAIVKNPSILLLDEATSALDAESE SV
Sbjct: 482 ISFINNLPDRYETQVGERGIQLSGGQKQRIAIARAIVKNPSILLLDEATSALDAESEKSV 541
Query: 560 QEALDRVMVGRTTVVVAHRLSTIRNADVIAVVQGRKIVKTGSHEELISNPNSAYAALVQL 619
QEALDRVMVGRTTVVVAHRLSTIRNAD+IAVVQ KIV+TGSHEELISNP+SAYA+LVQL
Sbjct: 542 QEALDRVMVGRTTVVVAHRLSTIRNADMIAVVQHGKIVETGSHEELISNPSSAYASLVQL 601
Query: 620 QEAASQQSNSSQCPNMGRPLSIKFSRELSGTRTSFGASFRSEKESVLSHGAADATEPATA 679
QE AS + + SQ P MGRPLS+K SRELS T TSFGASF S++ESV G A+ EP +
Sbjct: 602 QETASLKRHPSQGPTMGRPLSMKCSRELSRTTTSFGASFHSDRESVGRIG-AEGVEPVKS 660
Query: 680 KHVSAIKLYSMVRPDWTYGVCGTICAIIAGAQMPLFALGVSQALVAYYMDWDTTQREVKK 739
K VSA +LYSMV PDW YG+ GTICA+IAGAQMPLFALGV++ALV+YYMDWDTT+ +VKK
Sbjct: 661 KQVSARRLYSMVGPDWYYGLVGTICALIAGAQMPLFALGVTEALVSYYMDWDTTRHQVKK 720
Query: 740 ITILFCCAAVITVIVHAIEHLSFGIMGERLTLRVREKMFSAILSNEIGWFDEMDNSSSIL 799
I LFC A ITVIVHAIEH FGIMGERLTLR+RE +FSAIL NEIGWFD+ +N+SS+L
Sbjct: 721 IAFLFCGGAFITVIVHAIEHTCFGIMGERLTLRIREMLFSAILGNEIGWFDDANNTSSML 780
Query: 800 ASRLESDATLLRTIVVDRSTILIQNFGLVTASFVIAFILNWRITLVVVATYPLIISGHIS 859
+SRLESDATL RTI+VDRSTILIQN GLV SF+IAFILNWRITLVV+ATYPLIISGHIS
Sbjct: 781 SSRLESDATLFRTIIVDRSTILIQNLGLVVTSFIIAFILNWRITLVVLATYPLIISGHIS 840
Query: 860 EKLFFQGYGGNLSKAYLKANMLAAEAVSNIRTVAAFCSEDKVLELYSRELVEPSKRSFIR 919
EKLF QGYGGNLSKAYLKANM+A EAVSN+RTVAAFCSE+KVL+LYSRELVEP+ +SF R
Sbjct: 841 EKLFMQGYGGNLSKAYLKANMIAGEAVSNMRTVAAFCSEEKVLDLYSRELVEPANKSFTR 900
Query: 920 GQIAGIFYGISQFFIFSSYGLALWYGSVLMGKELASFKSVMKSFMVLIVTALAMGETLAL 979
GQIAG+FYGISQFFIFSSYGLALWYGS+LMGKELASFKSVMKSFMVLIVTALAMGETLAL
Sbjct: 901 GQIAGLFYGISQFFIFSSYGLALWYGSILMGKELASFKSVMKSFMVLIVTALAMGETLAL 960
Query: 980 VPDLLKGNQMAASVFEVLDRKTQVIGDIGEELTNVEGTIELRGVHFSYPSRPEVVIFKDF 1039
PDLLKGNQM ASVFE++DRKT+V+GD GEELT VEGTI+L+G+ F YPSRP+VVIFKDF
Sbjct: 961 APDLLKGNQMVASVFELMDRKTEVMGDAGEELTRVEGTIDLKGIEFRYPSRPDVVIFKDF 1020
Query: 1040 NLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGK 1076
+L+VRAGKSMALVGQSGSGKS+VLSLILRFYDP AGK
Sbjct: 1021 DLRVRAGKSMALVGQSGSGKSSVLSLILRFYDPIAGK 1057
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224074303|ref|XP_002304346.1| multidrug/pheromone exporter, MDR family, ABC transporter family [Populus trichocarpa] gi|222841778|gb|EEE79325.1| multidrug/pheromone exporter, MDR family, ABC transporter family [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 1801 bits (4664), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 869/1061 (81%), Positives = 968/1061 (91%), Gaps = 2/1061 (0%)
Query: 17 SSNNNNNNNTED-QESSKKQQQKRSVSLFKLFAFADFYDYILMSLGSIGACVHGVSVPVF 75
SS N +T+D ++ ++++++R V +KLFAFADFYDY+LM LGS+GACVHG SVPVF
Sbjct: 2 SSLAGNIEDTDDVEKKKEEKKKQRKVPFWKLFAFADFYDYVLMGLGSLGACVHGASVPVF 61
Query: 76 FIFFGKLINIIGLAYLFPKTASHKVAKYSLDFVYLSVAILFSSWIEVSCWMYTGERQAAK 135
FIFFGKLINIIGLAYLFPK ASH+V KYSLDFVYLSV ILF+SWIEV+CWM+TGERQAAK
Sbjct: 62 FIFFGKLINIIGLAYLFPKEASHRVGKYSLDFVYLSVVILFASWIEVACWMHTGERQAAK 121
Query: 136 MRMAYLRSMLNQDISLFDTEASTGEVISAITSDIIVVQDALSEKVGNFMHYISRFLGGFI 195
MRMAYL+SML+QDISLFDTEASTGEVI+AITSDIIVVQDA+SEKVGNFMHYISRFLGGFI
Sbjct: 122 MRMAYLKSMLSQDISLFDTEASTGEVIAAITSDIIVVQDAISEKVGNFMHYISRFLGGFI 181
Query: 196 IGFARVWQISLVTLSIVPLIALAGGMYAYVTIGLIARVRKSYVKAGEIAEEVIGNVRTVQ 255
IGF R+WQISLVTLSIVPLIALAGG+YAY+TIGLIA+VRKSYVKA ++AEEVIGNVRTVQ
Sbjct: 182 IGFVRIWQISLVTLSIVPLIALAGGIYAYITIGLIAKVRKSYVKASQVAEEVIGNVRTVQ 241
Query: 256 AFAGEDKAVKVYKEALSNTYKYGRKAGLAKGLGLGSMHCVLFLSWSLLVWYVSVVVHKHI 315
AF GE+KAV+ Y EAL TYKYGRKAGLAKGLGLG++HCVLFLSW+LLVWY S+VVHK+I
Sbjct: 242 AFTGEEKAVRSYIEALRKTYKYGRKAGLAKGLGLGTLHCVLFLSWALLVWYTSIVVHKNI 301
Query: 316 SNGGESFTTMLNVVIAGLSLGQAAPDITAFIRAKAAAYPIFEMIERDTMSKASSKTGRKL 375
+NGGESFTTMLNVVI+GLSLG AAPDI++F+ A AAAYPIFEMIE++TMSK SS++GRK+
Sbjct: 302 ANGGESFTTMLNVVISGLSLGMAAPDISSFLHATAAAYPIFEMIEKNTMSKISSESGRKV 361
Query: 376 DKLSGHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYE 435
D++ GHIEFKDV F YPSRPDV IFDKFCLDIP+GKIVALVGGSGSGKSTVISLIERFY+
Sbjct: 362 DRVDGHIEFKDVCFRYPSRPDVTIFDKFCLDIPSGKIVALVGGSGSGKSTVISLIERFYD 421
Query: 436 PLSGEILLDGNNIKGLDLKWLRQQIGLVNQEPALFATTIRENILYGKDDATMEEITRAAK 495
PL G+ILLDGN+I+ LDLKWLRQQIGLVNQEPALFAT+IRENILYGKDDAT+EEITRAAK
Sbjct: 422 PLFGKILLDGNDIRDLDLKWLRQQIGLVNQEPALFATSIRENILYGKDDATLEEITRAAK 481
Query: 496 LSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAES 555
LS AMSFI+NLP++FETQVGERGIQLSGGQKQRIA+SRAIVKNPSILLLDEATSALDAES
Sbjct: 482 LSGAMSFINNLPDKFETQVGERGIQLSGGQKQRIALSRAIVKNPSILLLDEATSALDAES 541
Query: 556 ENSVQEALDRVMVGRTTVVVAHRLSTIRNADVIAVVQGRKIVKTGSHEELISNPNSAYAA 615
E SVQEA+DR +VGRTTVVVAHRLSTIRNADVIAVVQ KIV+ GSHEELISNP S YA+
Sbjct: 542 EKSVQEAIDRAIVGRTTVVVAHRLSTIRNADVIAVVQEGKIVEIGSHEELISNPQSTYAS 601
Query: 616 LVQLQEAASQQSNSSQCPNMGRPLSIKFSRELSGTRTSFGASFRSEKESVLSHGAADATE 675
LV LQEAAS Q + S P +GRPLS+K+SRELS TR+SFG SF S+K+SV S DA E
Sbjct: 602 LVHLQEAASLQRHPSHGPTLGRPLSMKYSRELSHTRSSFGTSFHSDKDSV-SRVGGDALE 660
Query: 676 PATAKHVSAIKLYSMVRPDWTYGVCGTICAIIAGAQMPLFALGVSQALVAYYMDWDTTQR 735
K+VS +LYSMV PDW YGV GT+ A IAG+ MPLFALGVSQALVAYYMDWDTT+
Sbjct: 661 STRTKNVSLKRLYSMVGPDWIYGVLGTMGAFIAGSAMPLFALGVSQALVAYYMDWDTTRH 720
Query: 736 EVKKITILFCCAAVITVIVHAIEHLSFGIMGERLTLRVREKMFSAILSNEIGWFDEMDNS 795
EVKKI ILFCC A I+VIV+AIEHLSFGIMGERLTLRVRE MFSAIL NEIGWFD+++N+
Sbjct: 721 EVKKIAILFCCGAAISVIVYAIEHLSFGIMGERLTLRVREMMFSAILKNEIGWFDDLNNT 780
Query: 796 SSILASRLESDATLLRTIVVDRSTILIQNFGLVTASFVIAFILNWRITLVVVATYPLIIS 855
SS+L SRLESDATLLRTIVVDRSTIL+QN GLV SF+IAF LNWRITLVV+ATYPLIIS
Sbjct: 781 SSMLTSRLESDATLLRTIVVDRSTILLQNVGLVVTSFIIAFTLNWRITLVVIATYPLIIS 840
Query: 856 GHISEKLFFQGYGGNLSKAYLKANMLAAEAVSNIRTVAAFCSEDKVLELYSRELVEPSKR 915
GHISEKLF +GYGGNLSKAYLKANMLA EAVSNIRTVAAFC+E+K+L+LY+RELVEPSK
Sbjct: 841 GHISEKLFMKGYGGNLSKAYLKANMLAGEAVSNIRTVAAFCAEEKILDLYARELVEPSKN 900
Query: 916 SFIRGQIAGIFYGISQFFIFSSYGLALWYGSVLMGKELASFKSVMKSFMVLIVTALAMGE 975
SF RGQIAGIFYGI QFFIFSSYGLALWYGSVLM KELA FKS+MKSFMVLIVTALAMGE
Sbjct: 901 SFTRGQIAGIFYGICQFFIFSSYGLALWYGSVLMEKELAGFKSIMKSFMVLIVTALAMGE 960
Query: 976 TLALVPDLLKGNQMAASVFEVLDRKTQVIGDIGEELTNVEGTIELRGVHFSYPSRPEVVI 1035
TLAL PDLLKGN MAASVFE+LDRKTQV+GD+GEEL NVEGTIELRGV FSYPSRP+ +I
Sbjct: 961 TLALAPDLLKGNHMAASVFEILDRKTQVMGDVGEELKNVEGTIELRGVQFSYPSRPDALI 1020
Query: 1036 FKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGK 1076
FKDF+L+VR+GKSMALVGQSGSGKS+VLSLILRFYDPTAGK
Sbjct: 1021 FKDFDLRVRSGKSMALVGQSGSGKSSVLSLILRFYDPTAGK 1061
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255573463|ref|XP_002527657.1| multidrug resistance protein 1, 2, putative [Ricinus communis] gi|223532962|gb|EEF34728.1| multidrug resistance protein 1, 2, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 1786 bits (4625), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 862/1058 (81%), Positives = 966/1058 (91%), Gaps = 3/1058 (0%)
Query: 19 NNNNNNNTEDQESSKKQQQKRSVSLFKLFAFADFYDYILMSLGSIGACVHGVSVPVFFIF 78
N+ +N ++++ ++K+Q+K VSL KLFAFAD YDY+LM LGS+ A HG SVPVFFIF
Sbjct: 16 NDEDNEQQKEEQGARKKQKK--VSLLKLFAFADLYDYVLMGLGSVAAIAHGASVPVFFIF 73
Query: 79 FGKLINIIGLAYLFPKTASHKVAKYSLDFVYLSVAILFSSWIEVSCWMYTGERQAAKMRM 138
FGK+INIIGLAYLFP+ ASH+VAKYSLDFVYLSVAILFSSWIEV+CWM+TGERQA KMRM
Sbjct: 74 FGKMINIIGLAYLFPQQASHRVAKYSLDFVYLSVAILFSSWIEVACWMHTGERQATKMRM 133
Query: 139 AYLRSMLNQDISLFDTEASTGEVISAITSDIIVVQDALSEKVGNFMHYISRFLGGFIIGF 198
AYLRSMLNQDISLFDTEASTGEVI+AITSDI+VVQDA+SEKVGNFMHY+SRFL GF IGF
Sbjct: 134 AYLRSMLNQDISLFDTEASTGEVIAAITSDILVVQDAISEKVGNFMHYMSRFLAGFTIGF 193
Query: 199 ARVWQISLVTLSIVPLIALAGGMYAYVTIGLIARVRKSYVKAGEIAEEVIGNVRTVQAFA 258
RVWQISLVTLSIVPLIALAGG+YA+V+IGLIARVRK+YV+AGEIAEEVIGNVRTVQAFA
Sbjct: 194 IRVWQISLVTLSIVPLIALAGGIYAFVSIGLIARVRKAYVRAGEIAEEVIGNVRTVQAFA 253
Query: 259 GEDKAVKVYKEALSNTYKYGRKAGLAKGLGLGSMHCVLFLSWSLLVWYVSVVVHKHISNG 318
E+KAV+ YKEAL NTY+YGRKAGLAKGLGLG++HCVLFLSW+LLVW+ S+VVHK I+NG
Sbjct: 254 AEEKAVRSYKEALKNTYQYGRKAGLAKGLGLGTLHCVLFLSWALLVWFTSIVVHKSIANG 313
Query: 319 GESFTTMLNVVIAGLSLGQAAPDITAFIRAKAAAYPIFEMIERDTMSKASSKTGRKLDKL 378
GESFTTMLNVVIAGLSLGQAAPDI++F+RA AAAYPIFEMIERDT+ K++S TGRKL KL
Sbjct: 314 GESFTTMLNVVIAGLSLGQAAPDISSFVRAMAAAYPIFEMIERDTVMKSNSGTGRKLHKL 373
Query: 379 SGHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLS 438
GHIEFKD+ F YPSRPDV IFDK CLDIP+GKIVALVGGSGSGKSTV+SLIERFYEP+S
Sbjct: 374 QGHIEFKDICFSYPSRPDVMIFDKLCLDIPSGKIVALVGGSGSGKSTVVSLIERFYEPIS 433
Query: 439 GEILLDGNNIKGLDLKWLRQQIGLVNQEPALFATTIRENILYGKDDATMEEITRAAKLSE 498
G+ILLDGN+IK LDLKWLRQQIGLVNQEPALFAT+IRENILYGK+DAT++EIT AAKLSE
Sbjct: 434 GQILLDGNDIKDLDLKWLRQQIGLVNQEPALFATSIRENILYGKEDATLDEITNAAKLSE 493
Query: 499 AMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENS 558
AMSFI+NLP++F+TQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESE S
Sbjct: 494 AMSFINNLPDKFDTQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESEKS 553
Query: 559 VQEALDRVMVGRTTVVVAHRLSTIRNADVIAVVQGRKIVKTGSHEELISNPNSAYAALVQ 618
VQEALDR MVGRTTVVVAHRLSTIRNAD+IAVV KIV+ GSH+ELISNPNSAY++LV
Sbjct: 554 VQEALDRAMVGRTTVVVAHRLSTIRNADMIAVVHEGKIVEIGSHDELISNPNSAYSSLVH 613
Query: 619 LQEAASQQSNSSQCPNMGRPLSIKFSRELSGTRTSFGASFRSEKESVLSHGAADATEPAT 678
LQE AS Q SS MG+PLS+++SRELS R+SFGASFRSEK+SV S ADA EP
Sbjct: 614 LQETASLQRQSSLGLTMGQPLSVRYSRELSRRRSSFGASFRSEKDSV-SRAGADAMEPMK 672
Query: 679 AKHVSAIKLYSMVRPDWTYGVCGTICAIIAGAQMPLFALGVSQALVAYYMDWDTTQREVK 738
K VSA +LYSMV PDW YGV GTI A +AG+QMPLFALGVSQALVAYYMDWDTT+ E+K
Sbjct: 673 TKQVSAKRLYSMVGPDWIYGVVGTISAFMAGSQMPLFALGVSQALVAYYMDWDTTRHEIK 732
Query: 739 KITILFCCAAVITVIVHAIEHLSFGIMGERLTLRVREKMFSAILSNEIGWFDEMDNSSSI 798
KI+ILF C AV++VIV +IEHLSFGIMGERLT RVRE+MFSAIL NEIGWFD+++N+S++
Sbjct: 733 KISILFICGAVVSVIVFSIEHLSFGIMGERLTFRVRERMFSAILRNEIGWFDDLNNTSAM 792
Query: 799 LASRLESDATLLRTIVVDRSTILIQNFGLVTASFVIAFILNWRITLVVVATYPLIISGHI 858
LASRLESDATLLR +VVDR+TIL+QN GLV SF+IAF+LNWRITLVV+ATYPLIISGH
Sbjct: 793 LASRLESDATLLRNLVVDRTTILLQNVGLVVTSFIIAFLLNWRITLVVIATYPLIISGHF 852
Query: 859 SEKLFFQGYGGNLSKAYLKANMLAAEAVSNIRTVAAFCSEDKVLELYSRELVEPSKRSFI 918
SEKLF +GYGGNLSKAYLKANMLA EAVSN+RTVAAFC+E+KVL+LYSRELVEPSKRSF
Sbjct: 853 SEKLFMKGYGGNLSKAYLKANMLAGEAVSNMRTVAAFCAEEKVLDLYSRELVEPSKRSFT 912
Query: 919 RGQIAGIFYGISQFFIFSSYGLALWYGSVLMGKELASFKSVMKSFMVLIVTALAMGETLA 978
RGQIAGIFYG+SQFFIFSSYGLALWYGSVLM KELA FKSVMKSFMVLIVTALAMGETLA
Sbjct: 913 RGQIAGIFYGVSQFFIFSSYGLALWYGSVLMEKELAGFKSVMKSFMVLIVTALAMGETLA 972
Query: 979 LVPDLLKGNQMAASVFEVLDRKTQVIGDIGEELTNVEGTIELRGVHFSYPSRPEVVIFKD 1038
+ PDLLKGNQM ASVFE+LDRKT +IGD GEEL NVEG IEL GV FSYPSRP+V IFKD
Sbjct: 973 MAPDLLKGNQMVASVFELLDRKTNIIGDTGEELKNVEGNIELIGVEFSYPSRPDVSIFKD 1032
Query: 1039 FNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGK 1076
F+L+VR+GKS+ALVGQSGSGKS+VLSLILRFYDPTAG+
Sbjct: 1033 FDLRVRSGKSVALVGQSGSGKSSVLSLILRFYDPTAGR 1070
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356529728|ref|XP_003533440.1| PREDICTED: ABC transporter B family member 2-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1767 bits (4577), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 854/1050 (81%), Positives = 953/1050 (90%), Gaps = 3/1050 (0%)
Query: 27 EDQESSKKQQQKRSVSLFKLFAFADFYDYILMSLGSIGACVHGVSVPVFFIFFGKLINII 86
+D +S+KK+ + VSL KLF+FADFYDY+LM +GS+GA VHG SVPVFFIFFGKLIN+I
Sbjct: 14 DDAKSNKKEHK---VSLLKLFSFADFYDYVLMGVGSVGAIVHGASVPVFFIFFGKLINVI 70
Query: 87 GLAYLFPKTASHKVAKYSLDFVYLSVAILFSSWIEVSCWMYTGERQAAKMRMAYLRSMLN 146
GLAYLFPK ASHKVAKYSLDFVYLS+AILFSSW EV+CWM+TGERQAAKMRMAYL+SMLN
Sbjct: 71 GLAYLFPKEASHKVAKYSLDFVYLSIAILFSSWTEVACWMHTGERQAAKMRMAYLKSMLN 130
Query: 147 QDISLFDTEASTGEVISAITSDIIVVQDALSEKVGNFMHYISRFLGGFIIGFARVWQISL 206
QDISLFDTEASTGEVISAITSDII+VQDALSEKVGNFMHYISRF+ GF+IGF RVWQISL
Sbjct: 131 QDISLFDTEASTGEVISAITSDIIIVQDALSEKVGNFMHYISRFVAGFVIGFVRVWQISL 190
Query: 207 VTLSIVPLIALAGGMYAYVTIGLIARVRKSYVKAGEIAEEVIGNVRTVQAFAGEDKAVKV 266
VTLSIVPLIALAGG+YAYVTIGLIA+VRK+YV+AGEIAEEVIGNVRTVQAFAGE++AV+
Sbjct: 191 VTLSIVPLIALAGGLYAYVTIGLIAKVRKAYVRAGEIAEEVIGNVRTVQAFAGEERAVRS 250
Query: 267 YKEALSNTYKYGRKAGLAKGLGLGSMHCVLFLSWSLLVWYVSVVVHKHISNGGESFTTML 326
YK AL TY GRKAGLAKGLGLGSMHCVLFLSWSLLVW+ S+VVHK+I+NGGESFTTML
Sbjct: 251 YKAALMKTYVNGRKAGLAKGLGLGSMHCVLFLSWSLLVWFTSIVVHKNIANGGESFTTML 310
Query: 327 NVVIAGLSLGQAAPDITAFIRAKAAAYPIFEMIERDTMSKASSKTGRKLDKLSGHIEFKD 386
NVVIAGLSLGQAAPDI+AFIRAKAAAYPIFEMIER+T+SK+SSKTGRKL KL GHI+FK+
Sbjct: 311 NVVIAGLSLGQAAPDISAFIRAKAAAYPIFEMIERETVSKSSSKTGRKLGKLEGHIQFKN 370
Query: 387 VSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGN 446
V F YPSRPDVAIF+ CLDIP+GKI+ALVGGSGSGKSTVISLIERFYEP+SG+ILLD N
Sbjct: 371 VCFSYPSRPDVAIFNNLCLDIPSGKIIALVGGSGSGKSTVISLIERFYEPISGQILLDRN 430
Query: 447 NIKGLDLKWLRQQIGLVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNL 506
+I+ LDLKWLRQQIGLVNQEPALFAT+I+ENILYGKDDAT+EE+ RA KLS+A FI+NL
Sbjct: 431 DIRELDLKWLRQQIGLVNQEPALFATSIKENILYGKDDATLEELKRAVKLSDAQPFINNL 490
Query: 507 PERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRV 566
P+R ETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESE SVQEALDRV
Sbjct: 491 PDRLETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESEKSVQEALDRV 550
Query: 567 MVGRTTVVVAHRLSTIRNADVIAVVQGRKIVKTGSHEELISNPNSAYAALVQLQEAASQQ 626
MVGRTTVVVAHRLSTIRNAD+IAVVQG KIV+TG+HEEL++NP S YA+LVQLQEAAS
Sbjct: 551 MVGRTTVVVAHRLSTIRNADMIAVVQGGKIVETGNHEELMANPTSVYASLVQLQEAASLH 610
Query: 627 SNSSQCPNMGRPLSIKFSRELSGTRTSFGASFRSEKESVLSHGAADATEPATAKHVSAIK 686
S P+MG SI +SRELS T TS G SFRS+KES+ A + +HVSA +
Sbjct: 611 RLPSIGPSMGCQPSITYSRELSRTTTSLGGSFRSDKESIGRVCAEETENAGKKRHVSAAR 670
Query: 687 LYSMVRPDWTYGVCGTICAIIAGAQMPLFALGVSQALVAYYMDWDTTQREVKKITILFCC 746
LYSMV PDW YGV GT+CA IAGAQMPLFALG+S ALV+YYMDW+TT EVKKI LFC
Sbjct: 671 LYSMVGPDWFYGVAGTLCAFIAGAQMPLFALGISHALVSYYMDWETTCHEVKKIAFLFCG 730
Query: 747 AAVITVIVHAIEHLSFGIMGERLTLRVREKMFSAILSNEIGWFDEMDNSSSILASRLESD 806
AAVITV VHAIEHLSFGIMGERLTLRVRE MFSAIL NEIGWFD+ +N+SS+L+S+LE+D
Sbjct: 731 AAVITVTVHAIEHLSFGIMGERLTLRVREMMFSAILKNEIGWFDDTNNTSSMLSSQLETD 790
Query: 807 ATLLRTIVVDRSTILIQNFGLVTASFVIAFILNWRITLVVVATYPLIISGHISEKLFFQG 866
ATLLRTIVVDRSTIL+QN GLV ASF+IAFILNWRITLVV+ATYPL+ISGHISEKLF +G
Sbjct: 791 ATLLRTIVVDRSTILLQNIGLVIASFIIAFILNWRITLVVIATYPLVISGHISEKLFMKG 850
Query: 867 YGGNLSKAYLKANMLAAEAVSNIRTVAAFCSEDKVLELYSRELVEPSKRSFIRGQIAGIF 926
YGGNLSKAYLKANMLA EAVSNIRTVAAFCSE+KVL+LY+ ELV+PSKRS RGQIAGIF
Sbjct: 851 YGGNLSKAYLKANMLAGEAVSNIRTVAAFCSEEKVLDLYANELVDPSKRSLQRGQIAGIF 910
Query: 927 YGISQFFIFSSYGLALWYGSVLMGKELASFKSVMKSFMVLIVTALAMGETLALVPDLLKG 986
YGISQFFIFSSYGLALWYGSVLM KELASFKS+MK+F VLIVTALAMGETLAL PDLLKG
Sbjct: 911 YGISQFFIFSSYGLALWYGSVLMEKELASFKSIMKAFFVLIVTALAMGETLALAPDLLKG 970
Query: 987 NQMAASVFEVLDRKTQVIGDIGEELTNVEGTIELRGVHFSYPSRPEVVIFKDFNLKVRAG 1046
NQM ASVFEV+DRK+ + D+GEEL V+GTIEL+ ++FSYPSRP+V+IFKDFNL+V AG
Sbjct: 971 NQMVASVFEVMDRKSGISCDVGEELKTVDGTIELKRINFSYPSRPDVIIFKDFNLRVPAG 1030
Query: 1047 KSMALVGQSGSGKSTVLSLILRFYDPTAGK 1076
KS+ALVGQSGSGKS+V+SLILRFYDPT+G+
Sbjct: 1031 KSVALVGQSGSGKSSVISLILRFYDPTSGR 1060
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297803510|ref|XP_002869639.1| multidrug resistance protein 2 [Arabidopsis lyrata subsp. lyrata] gi|297315475|gb|EFH45898.1| multidrug resistance protein 2 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 1760 bits (4558), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 842/1044 (80%), Positives = 946/1044 (90%), Gaps = 7/1044 (0%)
Query: 33 KKQQQKRSVSLFKLFAFADFYDYILMSLGSIGACVHGVSVPVFFIFFGKLINIIGLAYLF 92
+K+ ++ VSL KLF+FADFYD +LM+LGS+GAC+HG SVP+FFIFFGKLINIIGLAYLF
Sbjct: 12 EKEMKQPKVSLLKLFSFADFYDCVLMTLGSVGACIHGASVPIFFIFFGKLINIIGLAYLF 71
Query: 93 PKTASHKVAKYSLDFVYLSVAILFSSWIEVSCWMYTGERQAAKMRMAYLRSMLNQDISLF 152
PK ASH+VAKYSLDFVYLSVAILFSSW+EV+CWM+TGERQAAKMR AYLRSML+QDISLF
Sbjct: 72 PKQASHRVAKYSLDFVYLSVAILFSSWLEVACWMHTGERQAAKMRRAYLRSMLSQDISLF 131
Query: 153 DTEASTGEVISAITSDIIVVQDALSEKVGNFMHYISRFLGGFIIGFARVWQISLVTLSIV 212
DTEASTGEVISAITSDI+VVQDALSEKVGNF+HYISRF+ GF IGF VWQISLVTLSIV
Sbjct: 132 DTEASTGEVISAITSDILVVQDALSEKVGNFLHYISRFIAGFAIGFTSVWQISLVTLSIV 191
Query: 213 PLIALAGGMYAYVTIGLIARVRKSYVKAGEIAEEVIGNVRTVQAFAGEDKAVKVYKEALS 272
PLIALAGG+YA+V IGLIARVRKSY+KAGEIAEEVIGNVRTVQAF GE++AV++Y+EAL
Sbjct: 192 PLIALAGGIYAFVAIGLIARVRKSYIKAGEIAEEVIGNVRTVQAFTGEERAVRLYREALE 251
Query: 273 NTYKYGRKAGLAKGLGLGSMHCVLFLSWSLLVWYVSVVVHKHISNGGESFTTMLNVVIAG 332
NTYKYGRKAGL KGLGLGSMHCVLFLSW+LLVW+ SVVVHK I+NGG+SFTTMLNVVIAG
Sbjct: 252 NTYKYGRKAGLTKGLGLGSMHCVLFLSWALLVWFTSVVVHKDIANGGKSFTTMLNVVIAG 311
Query: 333 LSLGQAAPDITAFIRAKAAAYPIFEMIERDTMSKASSKTGRKLDKLSGHIEFKDVSFCYP 392
LSLGQAAPDI+AF+RAKAAAYPIF+MIER+T++KAS+K+GRKL K+ GHI+FKDV+F YP
Sbjct: 312 LSLGQAAPDISAFVRAKAAAYPIFKMIERNTVTKASAKSGRKLGKVDGHIQFKDVTFSYP 371
Query: 393 SRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLD 452
SRPDV IFDK L IPAGKIVALVGGSGSGKSTVISLIERFYEP+SG +LLDGNNI +D
Sbjct: 372 SRPDVVIFDKLNLAIPAGKIVALVGGSGSGKSTVISLIERFYEPISGAVLLDGNNINEVD 431
Query: 453 LKWLRQQIGLVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFET 512
+KWLR QIGLVNQEPALFATTIRENILYGKDDAT EEI RAAKLSEA+SFI+NLPE FET
Sbjct: 432 IKWLRGQIGLVNQEPALFATTIRENILYGKDDATAEEINRAAKLSEAISFINNLPEGFET 491
Query: 513 QVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTT 572
QVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESE SVQEALDRVMVGRTT
Sbjct: 492 QVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESEKSVQEALDRVMVGRTT 551
Query: 573 VVVAHRLSTIRNADVIAVVQGRKIVKTGSHEELISNPNSAYAALVQLQEAASQQSNSSQC 632
VVVAHRLST+RNAD+IAVV KIV+ G+HE LISNP+ AY++L++LQEA+S Q N S
Sbjct: 552 VVVAHRLSTVRNADIIAVVHEGKIVEFGNHENLISNPDGAYSSLLRLQEASSLQRNPSLN 611
Query: 633 PNMGRPLSIKFSRELSGTRTSFGASFRSEKESVLSHGAADATEPATAKHVSAIKLYSMVR 692
+ RP SIK+SRELS TR+SF SE+ESV D EP+ V+ +LYSM+R
Sbjct: 612 RTLSRPHSIKYSRELSRTRSSFC----SERESVTR---PDGAEPSKKVKVTVGRLYSMIR 664
Query: 693 PDWTYGVCGTICAIIAGAQMPLFALGVSQALVAYYMDWDTTQREVKKITILFCCAAVITV 752
PDW YGVCGTICA IAG+QMPLFALGV+QALV+YY WD TQ+E+KKI ILFCCA++IT+
Sbjct: 665 PDWMYGVCGTICAFIAGSQMPLFALGVAQALVSYYNSWDETQKEIKKIAILFCCASIITL 724
Query: 753 IVHAIEHLSFGIMGERLTLRVREKMFSAILSNEIGWFDEMDNSSSILASRLESDATLLRT 812
IV+ IEH+ FG MGERLTLRVRE MF AIL NEIGWFDE+DN+SS+LASRLESDATLL+T
Sbjct: 725 IVYTIEHICFGTMGERLTLRVRENMFRAILKNEIGWFDEVDNTSSMLASRLESDATLLKT 784
Query: 813 IVVDRSTILIQNFGLVTASFVIAFILNWRITLVVVATYPLIISGHISEKLFFQGYGGNLS 872
IVVDRSTIL+QN GLV SF+IAFILNWR+TLVV+ATYPL+ISGHISEKLF QGYGG+L+
Sbjct: 785 IVVDRSTILLQNLGLVVTSFIIAFILNWRLTLVVLATYPLVISGHISEKLFMQGYGGDLN 844
Query: 873 KAYLKANMLAAEAVSNIRTVAAFCSEDKVLELYSRELVEPSKRSFIRGQIAGIFYGISQF 932
KAYLKANMLA E+VSNIRTVAAFC+E+K+LELYSREL+EPSK SF RGQIAG+FYG+SQF
Sbjct: 845 KAYLKANMLAGESVSNIRTVAAFCAEEKILELYSRELLEPSKSSFRRGQIAGLFYGVSQF 904
Query: 933 FIFSSYGLALWYGSVLMGKELASFKSVMKSFMVLIVTALAMGETLALVPDLLKGNQMAAS 992
FIFSSYGL LWYGS LM K LA FKSVMK+FMVLIVTALAMGETLAL PDLLKGNQM AS
Sbjct: 905 FIFSSYGLGLWYGSTLMDKGLAGFKSVMKTFMVLIVTALAMGETLALAPDLLKGNQMVAS 964
Query: 993 VFEVLDRKTQVIGDIGEELTNVEGTIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALV 1052
VFE+LDRKTQ++G+ EELTNVEGTIEL+GVHFSYPSRP+VVIF+DF+L VRAGKSMALV
Sbjct: 965 VFEILDRKTQIVGETSEELTNVEGTIELKGVHFSYPSRPDVVIFRDFDLIVRAGKSMALV 1024
Query: 1053 GQSGSGKSTVLSLILRFYDPTAGK 1076
GQSGSGKS+V+SLILRFYDPT GK
Sbjct: 1025 GQSGSGKSSVISLILRFYDPTGGK 1048
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|2108252|emb|CAA71277.1| P-glycoprotein-2 [Arabidopsis thaliana] gi|2108254|emb|CAA71276.1| P-glycoprotein-2 [Arabidopsis thaliana] gi|4538925|emb|CAB39661.1| P-glycoprotein-2 (pgp2) [Arabidopsis thaliana] gi|7269447|emb|CAB79451.1| P-glycoprotein-2 (pgp2) [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 1756 bits (4549), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 843/1044 (80%), Positives = 944/1044 (90%), Gaps = 7/1044 (0%)
Query: 33 KKQQQKRSVSLFKLFAFADFYDYILMSLGSIGACVHGVSVPVFFIFFGKLINIIGLAYLF 92
+K+ + VSL KLF+FADFYD +LM+LGS+GAC+HG SVP+FFIFFGKLINIIGLAYLF
Sbjct: 12 EKEMTQPKVSLLKLFSFADFYDCVLMTLGSVGACIHGASVPIFFIFFGKLINIIGLAYLF 71
Query: 93 PKTASHKVAKYSLDFVYLSVAILFSSWIEVSCWMYTGERQAAKMRMAYLRSMLNQDISLF 152
PK ASH+VAKYSLDFVYLSVAILFSSW+EV+CWM+TGERQAAKMR AYLRSML+QDISLF
Sbjct: 72 PKQASHRVAKYSLDFVYLSVAILFSSWLEVACWMHTGERQAAKMRRAYLRSMLSQDISLF 131
Query: 153 DTEASTGEVISAITSDIIVVQDALSEKVGNFMHYISRFLGGFIIGFARVWQISLVTLSIV 212
DTEASTGEVISAITSDI+VVQDALSEKVGNF+HYISRF+ GF IGF VWQISLVTLSIV
Sbjct: 132 DTEASTGEVISAITSDILVVQDALSEKVGNFLHYISRFIAGFAIGFTSVWQISLVTLSIV 191
Query: 213 PLIALAGGMYAYVTIGLIARVRKSYVKAGEIAEEVIGNVRTVQAFAGEDKAVKVYKEALS 272
PLIALAGG+YA+V IGLIARVRKSY+KAGEIAEEVIGNVRTVQAF GE++AV++Y+EAL
Sbjct: 192 PLIALAGGIYAFVAIGLIARVRKSYIKAGEIAEEVIGNVRTVQAFTGEERAVRLYREALE 251
Query: 273 NTYKYGRKAGLAKGLGLGSMHCVLFLSWSLLVWYVSVVVHKHISNGGESFTTMLNVVIAG 332
NTYKYGRKAGL KGLGLGSMHCVLFLSW+LLVW+ SVVVHK I++GG+SFTTMLNVVIAG
Sbjct: 252 NTYKYGRKAGLTKGLGLGSMHCVLFLSWALLVWFTSVVVHKDIADGGKSFTTMLNVVIAG 311
Query: 333 LSLGQAAPDITAFIRAKAAAYPIFEMIERDTMSKASSKTGRKLDKLSGHIEFKDVSFCYP 392
LSLGQAAPDI+AF+RAKAAAYPIF+MIER+T++K S+K+GRKL K+ GHI+FKD +F YP
Sbjct: 312 LSLGQAAPDISAFVRAKAAAYPIFKMIERNTVTKTSAKSGRKLGKVDGHIQFKDATFSYP 371
Query: 393 SRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLD 452
SRPDV IFD+ L IPAGKIVALVGGSGSGKSTVISLIERFYEP+SG +LLDGNNI LD
Sbjct: 372 SRPDVVIFDRLNLAIPAGKIVALVGGSGSGKSTVISLIERFYEPISGAVLLDGNNISELD 431
Query: 453 LKWLRQQIGLVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFET 512
+KWLR QIGLVNQEPALFATTIRENILYGKDDAT EEITRAAKLSEA+SFI+NLPE FET
Sbjct: 432 IKWLRGQIGLVNQEPALFATTIRENILYGKDDATAEEITRAAKLSEAISFINNLPEGFET 491
Query: 513 QVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTT 572
QVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESE SVQEALDRVMVGRTT
Sbjct: 492 QVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESEKSVQEALDRVMVGRTT 551
Query: 573 VVVAHRLSTIRNADVIAVVQGRKIVKTGSHEELISNPNSAYAALVQLQEAASQQSNSSQC 632
VVVAHRLST+RNAD+IAVV KIV+ G+HE LISNP+ AY++L++LQE AS Q N S
Sbjct: 552 VVVAHRLSTVRNADIIAVVHEGKIVEFGNHENLISNPDGAYSSLLRLQETASLQRNPSLN 611
Query: 633 PNMGRPLSIKFSRELSGTRTSFGASFRSEKESVLSHGAADATEPATAKHVSAIKLYSMVR 692
+ RP SIK+SRELS TR+SF SE+ESV AD P+ V+ +LYSM+R
Sbjct: 612 RTLSRPHSIKYSRELSRTRSSFC----SERESVTRPDGAD---PSKKVKVTVGRLYSMIR 664
Query: 693 PDWTYGVCGTICAIIAGAQMPLFALGVSQALVAYYMDWDTTQREVKKITILFCCAAVITV 752
PDW YGVCGTICA IAG+QMPLFALGVSQALV+YY WD TQ+E+KKI ILFCCA+VIT+
Sbjct: 665 PDWMYGVCGTICAFIAGSQMPLFALGVSQALVSYYSGWDETQKEIKKIAILFCCASVITL 724
Query: 753 IVHAIEHLSFGIMGERLTLRVREKMFSAILSNEIGWFDEMDNSSSILASRLESDATLLRT 812
IV+ IEH+ FG MGERLTLRVRE MF AIL NEIGWFDE+DN+SS+LASRLESDATLL+T
Sbjct: 725 IVYTIEHICFGTMGERLTLRVRENMFRAILKNEIGWFDEVDNTSSMLASRLESDATLLKT 784
Query: 813 IVVDRSTILIQNFGLVTASFVIAFILNWRITLVVVATYPLIISGHISEKLFFQGYGGNLS 872
IVVDRSTIL+QN GLV SF+IAFILNWR+TLVV+ATYPL+ISGHISEKLF QGYGG+L+
Sbjct: 785 IVVDRSTILLQNLGLVVTSFIIAFILNWRLTLVVLATYPLVISGHISEKLFMQGYGGDLN 844
Query: 873 KAYLKANMLAAEAVSNIRTVAAFCSEDKVLELYSRELVEPSKRSFIRGQIAGIFYGISQF 932
KAYLKANMLA E+VSNIRTVAAFC+E+K+LELYSREL+EPSK SF RGQIAG+FYG+SQF
Sbjct: 845 KAYLKANMLAGESVSNIRTVAAFCAEEKILELYSRELLEPSKSSFRRGQIAGLFYGVSQF 904
Query: 933 FIFSSYGLALWYGSVLMGKELASFKSVMKSFMVLIVTALAMGETLALVPDLLKGNQMAAS 992
FIFSSYGLALWYGS LM K LA FKSVMK+FMVLIVTALAMGETLAL PDLLKGNQM AS
Sbjct: 905 FIFSSYGLALWYGSTLMDKGLAGFKSVMKTFMVLIVTALAMGETLALAPDLLKGNQMVAS 964
Query: 993 VFEVLDRKTQVIGDIGEELTNVEGTIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALV 1052
VFE+LDRKTQ++G+ EEL NVEGTIEL+GVHFSYPSRP+VVIF+DF+L VRAGKSMALV
Sbjct: 965 VFEILDRKTQIVGETSEELNNVEGTIELKGVHFSYPSRPDVVIFRDFDLIVRAGKSMALV 1024
Query: 1053 GQSGSGKSTVLSLILRFYDPTAGK 1076
GQSGSGKS+V+SLILRFYDPTAGK
Sbjct: 1025 GQSGSGKSSVISLILRFYDPTAGK 1048
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|20466380|gb|AAM20507.1| P-glycoprotein-2 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 1756 bits (4548), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 843/1044 (80%), Positives = 944/1044 (90%), Gaps = 7/1044 (0%)
Query: 33 KKQQQKRSVSLFKLFAFADFYDYILMSLGSIGACVHGVSVPVFFIFFGKLINIIGLAYLF 92
+K+ + VSL KLF+FADFYD +LM+LGS+GAC+HG SVP+FFIFFGKLINIIGLAYLF
Sbjct: 12 EKEMTQPKVSLLKLFSFADFYDCVLMTLGSVGACIHGASVPIFFIFFGKLINIIGLAYLF 71
Query: 93 PKTASHKVAKYSLDFVYLSVAILFSSWIEVSCWMYTGERQAAKMRMAYLRSMLNQDISLF 152
PK ASH+VAKYSLDFVYLSVAILFSSW+EV+CWM+TGERQAAKMR AYLRSML+QDISLF
Sbjct: 72 PKQASHRVAKYSLDFVYLSVAILFSSWLEVACWMHTGERQAAKMRRAYLRSMLSQDISLF 131
Query: 153 DTEASTGEVISAITSDIIVVQDALSEKVGNFMHYISRFLGGFIIGFARVWQISLVTLSIV 212
DTEASTGEVISAITSDI+VVQDALSEKVGNF+HYISRF+ GF IGF VWQISLVTLSIV
Sbjct: 132 DTEASTGEVISAITSDILVVQDALSEKVGNFLHYISRFIAGFAIGFTSVWQISLVTLSIV 191
Query: 213 PLIALAGGMYAYVTIGLIARVRKSYVKAGEIAEEVIGNVRTVQAFAGEDKAVKVYKEALS 272
PLIALAGG+YA+V IGLIARVRKSY+KAGEIAEEVIGNVRTVQAF GE++AV++Y+EAL
Sbjct: 192 PLIALAGGIYAFVAIGLIARVRKSYIKAGEIAEEVIGNVRTVQAFTGEERAVRLYREALE 251
Query: 273 NTYKYGRKAGLAKGLGLGSMHCVLFLSWSLLVWYVSVVVHKHISNGGESFTTMLNVVIAG 332
NTYKYGRKAGL KGLGLGSMHCVLFLSW+LLVW+ SVVVHK I++GG+SFTTMLNVVIAG
Sbjct: 252 NTYKYGRKAGLTKGLGLGSMHCVLFLSWALLVWFTSVVVHKDIADGGKSFTTMLNVVIAG 311
Query: 333 LSLGQAAPDITAFIRAKAAAYPIFEMIERDTMSKASSKTGRKLDKLSGHIEFKDVSFCYP 392
LSLGQAAPDI+AF+RAKAAAYPIF+MIER+T++K S+K+GRKL K+ GHI+FKD +F YP
Sbjct: 312 LSLGQAAPDISAFVRAKAAAYPIFKMIERNTVTKTSAKSGRKLGKVDGHIQFKDATFSYP 371
Query: 393 SRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLD 452
SRPDV IFD+ L IPAGKIVALVGGSGSGKSTVISLIERFYEP+SG +LLDGNNI LD
Sbjct: 372 SRPDVVIFDRLNLAIPAGKIVALVGGSGSGKSTVISLIERFYEPISGAVLLDGNNISELD 431
Query: 453 LKWLRQQIGLVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFET 512
+KWLR QIGLVNQEPALFATTIRENILYGKDDAT EEITRAAKLSEA+SFI+NLPE FET
Sbjct: 432 IKWLRGQIGLVNQEPALFATTIRENILYGKDDATAEEITRAAKLSEAISFINNLPEGFET 491
Query: 513 QVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTT 572
QVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESE SVQEALDRVMVGRTT
Sbjct: 492 QVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESEKSVQEALDRVMVGRTT 551
Query: 573 VVVAHRLSTIRNADVIAVVQGRKIVKTGSHEELISNPNSAYAALVQLQEAASQQSNSSQC 632
VVVAHRLST+RNAD+IAVV KIV+ G+HE LISNP+ AY++L++LQE AS Q N S
Sbjct: 552 VVVAHRLSTVRNADIIAVVHEGKIVEFGNHENLISNPDGAYSSLLRLQETASLQRNPSLN 611
Query: 633 PNMGRPLSIKFSRELSGTRTSFGASFRSEKESVLSHGAADATEPATAKHVSAIKLYSMVR 692
+ RP SIK+SRELS TR+SF SE+ESV AD P+ V+ +LYSM+R
Sbjct: 612 RTLSRPHSIKYSRELSRTRSSFC----SERESVTRPDGAD---PSKKVKVTVGRLYSMIR 664
Query: 693 PDWTYGVCGTICAIIAGAQMPLFALGVSQALVAYYMDWDTTQREVKKITILFCCAAVITV 752
PDW YGVCGTICA IAG+QMPLFALGVSQALV+YY WD TQ+E+KKI ILFCCA+VIT+
Sbjct: 665 PDWMYGVCGTICAFIAGSQMPLFALGVSQALVSYYSGWDETQKEIKKIAILFCCASVITL 724
Query: 753 IVHAIEHLSFGIMGERLTLRVREKMFSAILSNEIGWFDEMDNSSSILASRLESDATLLRT 812
IV+ IEH+ FG MGERLTLRVRE MF AIL NEIGWFDE+DN+SS+LASRLESDATLL+T
Sbjct: 725 IVYTIEHICFGTMGERLTLRVRENMFRAILKNEIGWFDEVDNASSMLASRLESDATLLKT 784
Query: 813 IVVDRSTILIQNFGLVTASFVIAFILNWRITLVVVATYPLIISGHISEKLFFQGYGGNLS 872
IVVDRSTIL+QN GLV SF+IAFILNWR+TLVV+ATYPL+ISGHISEKLF QGYGG+L+
Sbjct: 785 IVVDRSTILLQNLGLVVTSFIIAFILNWRLTLVVLATYPLVISGHISEKLFMQGYGGDLN 844
Query: 873 KAYLKANMLAAEAVSNIRTVAAFCSEDKVLELYSRELVEPSKRSFIRGQIAGIFYGISQF 932
KAYLKANMLA E+VSNIRTVAAFC+E+K+LELYSREL+EPSK SF RGQIAG+FYG+SQF
Sbjct: 845 KAYLKANMLAGESVSNIRTVAAFCAEEKILELYSRELLEPSKSSFRRGQIAGLFYGVSQF 904
Query: 933 FIFSSYGLALWYGSVLMGKELASFKSVMKSFMVLIVTALAMGETLALVPDLLKGNQMAAS 992
FIFSSYGLALWYGS LM K LA FKSVMK+FMVLIVTALAMGETLAL PDLLKGNQM AS
Sbjct: 905 FIFSSYGLALWYGSTLMDKGLAGFKSVMKTFMVLIVTALAMGETLALAPDLLKGNQMVAS 964
Query: 993 VFEVLDRKTQVIGDIGEELTNVEGTIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALV 1052
VFE+LDRKTQ++G+ EEL NVEGTIEL+GVHFSYPSRP+VVIF+DF+L VRAGKSMALV
Sbjct: 965 VFEILDRKTQIVGETSEELNNVEGTIELKGVHFSYPSRPDVVIFRDFDLIVRAGKSMALV 1024
Query: 1053 GQSGSGKSTVLSLILRFYDPTAGK 1076
GQSGSGKS+V+SLILRFYDPTAGK
Sbjct: 1025 GQSGSGKSSVISLILRFYDPTAGK 1048
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356497653|ref|XP_003517674.1| PREDICTED: ABC transporter B family member 2-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1756 bits (4547), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 856/1056 (81%), Positives = 958/1056 (90%), Gaps = 3/1056 (0%)
Query: 21 NNNNNTEDQESSKKQQQKRSVSLFKLFAFADFYDYILMSLGSIGACVHGVSVPVFFIFFG 80
+ ++ +D +S+KK+ + VSL KLF+FADFYDY+LM +GS+GA VHG SVPVFFIFFG
Sbjct: 8 SGDSAVDDAKSNKKEHK---VSLLKLFSFADFYDYVLMGVGSVGAIVHGASVPVFFIFFG 64
Query: 81 KLINIIGLAYLFPKTASHKVAKYSLDFVYLSVAILFSSWIEVSCWMYTGERQAAKMRMAY 140
KLIN+IGLAYLFPK ASHKVAKYSLDFVYLS+AILFSSW EV+CWM+TGERQAAKMRMAY
Sbjct: 65 KLINVIGLAYLFPKEASHKVAKYSLDFVYLSIAILFSSWTEVACWMHTGERQAAKMRMAY 124
Query: 141 LRSMLNQDISLFDTEASTGEVISAITSDIIVVQDALSEKVGNFMHYISRFLGGFIIGFAR 200
L+SMLNQDISLFDTEASTGEVIS+ITSDII+VQDALSEKVGNFMHYISRF+ GF+IGF R
Sbjct: 125 LKSMLNQDISLFDTEASTGEVISSITSDIIIVQDALSEKVGNFMHYISRFVAGFVIGFVR 184
Query: 201 VWQISLVTLSIVPLIALAGGMYAYVTIGLIARVRKSYVKAGEIAEEVIGNVRTVQAFAGE 260
VWQISLVTLSIVPLIALAGG+YAYVTIGLIA+VRK+YV+AGEIAEEVIGNVRTVQAFAGE
Sbjct: 185 VWQISLVTLSIVPLIALAGGLYAYVTIGLIAKVRKAYVRAGEIAEEVIGNVRTVQAFAGE 244
Query: 261 DKAVKVYKEALSNTYKYGRKAGLAKGLGLGSMHCVLFLSWSLLVWYVSVVVHKHISNGGE 320
++AV+ YK AL TY GRKAGLAKGLGLGSMHCVLFLSWSLLVW+ S+VVHK+I+NGGE
Sbjct: 245 ERAVRSYKAALMKTYVNGRKAGLAKGLGLGSMHCVLFLSWSLLVWFTSIVVHKNIANGGE 304
Query: 321 SFTTMLNVVIAGLSLGQAAPDITAFIRAKAAAYPIFEMIERDTMSKASSKTGRKLDKLSG 380
SFTTMLNVVIAGLSLGQAAPDI+AFIRAKAAAYPIFEMIERDT+SK+SSKTGRKL KL G
Sbjct: 305 SFTTMLNVVIAGLSLGQAAPDISAFIRAKAAAYPIFEMIERDTVSKSSSKTGRKLGKLEG 364
Query: 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGE 440
HI+FK++ F YPSRPDVAIF+ CLDIP+GKIVALVGGSGSGKSTVISLIERFYEPLSG+
Sbjct: 365 HIQFKNICFSYPSRPDVAIFNNLCLDIPSGKIVALVGGSGSGKSTVISLIERFYEPLSGQ 424
Query: 441 ILLDGNNIKGLDLKWLRQQIGLVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAM 500
ILLD N+I+ LDLKWLRQQIGLVNQEPALFAT+I+ENILYGKDDAT+EE+ RA KLS+A
Sbjct: 425 ILLDRNDIRELDLKWLRQQIGLVNQEPALFATSIKENILYGKDDATLEELKRAVKLSDAQ 484
Query: 501 SFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQ 560
SFI+NLP+R ETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESE SVQ
Sbjct: 485 SFINNLPDRLETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESEKSVQ 544
Query: 561 EALDRVMVGRTTVVVAHRLSTIRNADVIAVVQGRKIVKTGSHEELISNPNSAYAALVQLQ 620
EALDRVMVGRTTVVVAHRLSTIRNAD+IAVVQG KIV+TG+HEEL++NP S YA+LVQLQ
Sbjct: 545 EALDRVMVGRTTVVVAHRLSTIRNADMIAVVQGGKIVETGNHEELMANPTSVYASLVQLQ 604
Query: 621 EAASQQSNSSQCPNMGRPLSIKFSRELSGTRTSFGASFRSEKESVLSHGAADATEPATAK 680
EAAS S P+MGR SI +SRELS T TS G SFRS+KES+ A + +
Sbjct: 605 EAASLHRLPSIGPSMGRQPSITYSRELSRTTTSLGGSFRSDKESIGRVCAEETENAGKKR 664
Query: 681 HVSAIKLYSMVRPDWTYGVCGTICAIIAGAQMPLFALGVSQALVAYYMDWDTTQREVKKI 740
HVSA +LYSMV PDW YGV GT+CA IAGAQMPLFALG+S ALV+YYMDW+TT EVKKI
Sbjct: 665 HVSAARLYSMVGPDWFYGVAGTLCAFIAGAQMPLFALGISHALVSYYMDWETTCHEVKKI 724
Query: 741 TILFCCAAVITVIVHAIEHLSFGIMGERLTLRVREKMFSAILSNEIGWFDEMDNSSSILA 800
LFC AAVITV VHAIEHLSFGIMGERLTLRVRE MFSAIL NEIGWFD+ +N+SS+L+
Sbjct: 725 AFLFCGAAVITVTVHAIEHLSFGIMGERLTLRVREMMFSAILKNEIGWFDDTNNTSSMLS 784
Query: 801 SRLESDATLLRTIVVDRSTILIQNFGLVTASFVIAFILNWRITLVVVATYPLIISGHISE 860
S+LE+DATLLRTIVVDRSTIL+QN GLV ASF++AFILNWRITLVV+ATYPLIISGHISE
Sbjct: 785 SQLETDATLLRTIVVDRSTILLQNIGLVVASFIVAFILNWRITLVVIATYPLIISGHISE 844
Query: 861 KLFFQGYGGNLSKAYLKANMLAAEAVSNIRTVAAFCSEDKVLELYSRELVEPSKRSFIRG 920
KLF +GYGGNLSKAYLKANMLA EAVSNIRTVAAFCSE+KVL+LY+ ELV+PSKRS RG
Sbjct: 845 KLFMKGYGGNLSKAYLKANMLAGEAVSNIRTVAAFCSEEKVLDLYANELVDPSKRSLQRG 904
Query: 921 QIAGIFYGISQFFIFSSYGLALWYGSVLMGKELASFKSVMKSFMVLIVTALAMGETLALV 980
QIAGIFYGISQFFIFSSYGLALWYGSVLM KELASFKS+MK+F VLIVTALAMGETLAL
Sbjct: 905 QIAGIFYGISQFFIFSSYGLALWYGSVLMEKELASFKSIMKAFFVLIVTALAMGETLALA 964
Query: 981 PDLLKGNQMAASVFEVLDRKTQVIGDIGEELTNVEGTIELRGVHFSYPSRPEVVIFKDFN 1040
PDLLKGNQM ASVFEV+DRK+ + ++GEEL V+GTIEL+ ++FSYPSRP+V+IFKDFN
Sbjct: 965 PDLLKGNQMVASVFEVMDRKSGISCEVGEELKTVDGTIELKRINFSYPSRPDVIIFKDFN 1024
Query: 1041 LKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGK 1076
L+V AGKS+ALVGQSGSGKS+V+SLILRFYDPT+G+
Sbjct: 1025 LRVPAGKSVALVGQSGSGKSSVISLILRFYDPTSGR 1060
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|79487035|ref|NP_194326.2| P-glycoprotein 2 [Arabidopsis thaliana] gi|334302927|sp|Q8LPK2.3|AB2B_ARATH RecName: Full=ABC transporter B family member 2; Short=ABC transporter ABCB.2; Short=AtABCB2; AltName: Full=Multidrug resistance protein 2; AltName: Full=P-glycoprotein 2; Flags: Precursor gi|110742439|dbj|BAE99138.1| P-glycoprotein-2 [Arabidopsis thaliana] gi|332659737|gb|AEE85137.1| P-glycoprotein 2 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 1755 bits (4546), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 847/1069 (79%), Positives = 951/1069 (88%), Gaps = 8/1069 (0%)
Query: 8 SFPVNDYNNSSNNNNNNNTEDQESSKKQQQKRSVSLFKLFAFADFYDYILMSLGSIGACV 67
S P N Y + + + +K+ + VSL KLF+FADFYD +LM+LGS+GAC+
Sbjct: 28 SSPTN-YTHLKLKKMQPSGDPAPEKEKEMTQPKVSLLKLFSFADFYDCVLMTLGSVGACI 86
Query: 68 HGVSVPVFFIFFGKLINIIGLAYLFPKTASHKVAKYSLDFVYLSVAILFSSWIEVSCWMY 127
HG SVP+FFIFFGKLINIIGLAYLFPK ASH+VAKYSLDFVYLSVAILFSSW+EV+CWM+
Sbjct: 87 HGASVPIFFIFFGKLINIIGLAYLFPKQASHRVAKYSLDFVYLSVAILFSSWLEVACWMH 146
Query: 128 TGERQAAKMRMAYLRSMLNQDISLFDTEASTGEVISAITSDIIVVQDALSEKVGNFMHYI 187
TGERQAAKMR AYLRSML+QDISLFDTEASTGEVISAITSDI+VVQDALSEKVGNF+HYI
Sbjct: 147 TGERQAAKMRRAYLRSMLSQDISLFDTEASTGEVISAITSDILVVQDALSEKVGNFLHYI 206
Query: 188 SRFLGGFIIGFARVWQISLVTLSIVPLIALAGGMYAYVTIGLIARVRKSYVKAGEIAEEV 247
SRF+ GF IGF VWQISLVTLSIVPLIALAGG+YA+V IGLIARVRKSY+KAGEIAEEV
Sbjct: 207 SRFIAGFAIGFTSVWQISLVTLSIVPLIALAGGIYAFVAIGLIARVRKSYIKAGEIAEEV 266
Query: 248 IGNVRTVQAFAGEDKAVKVYKEALSNTYKYGRKAGLAKGLGLGSMHCVLFLSWSLLVWYV 307
IGNVRTVQAF GE++AV++Y+EAL NTYKYGRKAGL KGLGLGSMHCVLFLSW+LLVW+
Sbjct: 267 IGNVRTVQAFTGEERAVRLYREALENTYKYGRKAGLTKGLGLGSMHCVLFLSWALLVWFT 326
Query: 308 SVVVHKHISNGGESFTTMLNVVIAGLSLGQAAPDITAFIRAKAAAYPIFEMIERDTMSKA 367
SVVVHK I++GG+SFTTMLNVVIAGLSLGQAAPDI+AF+RAKAAAYPIF+MIER+T++K
Sbjct: 327 SVVVHKDIADGGKSFTTMLNVVIAGLSLGQAAPDISAFVRAKAAAYPIFKMIERNTVTKT 386
Query: 368 SSKTGRKLDKLSGHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVI 427
S+K+GRKL K+ GHI+FKD +F YPSRPDV IFD+ L IPAGKIVALVGGSGSGKSTVI
Sbjct: 387 SAKSGRKLGKVDGHIQFKDATFSYPSRPDVVIFDRLNLAIPAGKIVALVGGSGSGKSTVI 446
Query: 428 SLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIGLVNQEPALFATTIRENILYGKDDATM 487
SLIERFYEP+SG +LLDGNNI LD+KWLR QIGLVNQEPALFATTIRENILYGKDDAT
Sbjct: 447 SLIERFYEPISGAVLLDGNNISELDIKWLRGQIGLVNQEPALFATTIRENILYGKDDATA 506
Query: 488 EEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEA 547
EEITRAAKLSEA+SFI+NLPE FETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEA
Sbjct: 507 EEITRAAKLSEAISFINNLPEGFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEA 566
Query: 548 TSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRNADVIAVVQGRKIVKTGSHEELIS 607
TSALDAESE SVQEALDRVMVGRTTVVVAHRLST+RNAD+IAVV KIV+ G+HE LIS
Sbjct: 567 TSALDAESEKSVQEALDRVMVGRTTVVVAHRLSTVRNADIIAVVHEGKIVEFGNHENLIS 626
Query: 608 NPNSAYAALVQLQEAASQQSNSSQCPNMGRPLSIKFSRELSGTRTSFGASFRSEKESVLS 667
NP+ AY++L++LQE AS Q N S + RP SIK+SRELS TR+SF SE+ESV
Sbjct: 627 NPDGAYSSLLRLQETASLQRNPSLNRTLSRPHSIKYSRELSRTRSSFC----SERESVTR 682
Query: 668 HGAADATEPATAKHVSAIKLYSMVRPDWTYGVCGTICAIIAGAQMPLFALGVSQALVAYY 727
AD P+ V+ +LYSM+RPDW YGVCGTICA IAG+QMPLFALGVSQALV+YY
Sbjct: 683 PDGAD---PSKKVKVTVGRLYSMIRPDWMYGVCGTICAFIAGSQMPLFALGVSQALVSYY 739
Query: 728 MDWDTTQREVKKITILFCCAAVITVIVHAIEHLSFGIMGERLTLRVREKMFSAILSNEIG 787
WD TQ+E+KKI ILFCCA+VIT+IV+ IEH+ FG MGERLTLRVRE MF AIL NEIG
Sbjct: 740 SGWDETQKEIKKIAILFCCASVITLIVYTIEHICFGTMGERLTLRVRENMFRAILKNEIG 799
Query: 788 WFDEMDNSSSILASRLESDATLLRTIVVDRSTILIQNFGLVTASFVIAFILNWRITLVVV 847
WFDE+DN+SS+LASRLESDATLL+TIVVDRSTIL+QN GLV SF+IAFILNWR+TLVV+
Sbjct: 800 WFDEVDNTSSMLASRLESDATLLKTIVVDRSTILLQNLGLVVTSFIIAFILNWRLTLVVL 859
Query: 848 ATYPLIISGHISEKLFFQGYGGNLSKAYLKANMLAAEAVSNIRTVAAFCSEDKVLELYSR 907
ATYPL+ISGHISEKLF QGYGG+L+KAYLKANMLA E+VSNIRTVAAFC+E+K+LELYSR
Sbjct: 860 ATYPLVISGHISEKLFMQGYGGDLNKAYLKANMLAGESVSNIRTVAAFCAEEKILELYSR 919
Query: 908 ELVEPSKRSFIRGQIAGIFYGISQFFIFSSYGLALWYGSVLMGKELASFKSVMKSFMVLI 967
EL+EPSK SF RGQIAG+FYG+SQFFIFSSYGLALWYGS LM K LA FKSVMK+FMVLI
Sbjct: 920 ELLEPSKSSFRRGQIAGLFYGVSQFFIFSSYGLALWYGSTLMDKGLAGFKSVMKTFMVLI 979
Query: 968 VTALAMGETLALVPDLLKGNQMAASVFEVLDRKTQVIGDIGEELTNVEGTIELRGVHFSY 1027
VTALAMGETLAL PDLLKGNQM ASVFE+LDRKTQ++G+ EEL NVEGTIEL+GVHFSY
Sbjct: 980 VTALAMGETLALAPDLLKGNQMVASVFEILDRKTQIVGETSEELNNVEGTIELKGVHFSY 1039
Query: 1028 PSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGK 1076
PSRP+VVIF+DF+L VRAGKSMALVGQSGSGKS+V+SLILRFYDPTAGK
Sbjct: 1040 PSRPDVVIFRDFDLIVRAGKSMALVGQSGSGKSSVISLILRFYDPTAGK 1088
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1077 | ||||||
| TAIR|locus:2120805 | 1273 | ABCB2 "ATP-binding cassette B2 | 0.955 | 0.808 | 0.777 | 0.0 | |
| UNIPROTKB|Q8GU75 | 1264 | mdr11 "MDR-like ABC transporte | 0.960 | 0.818 | 0.728 | 0.0 | |
| TAIR|locus:2019958 | 1227 | PGP10 "P-glycoprotein 10" [Ara | 0.641 | 0.563 | 0.746 | 6.2e-275 | |
| TAIR|locus:2090734 | 1252 | ABCB19 "ATP-binding cassette B | 0.954 | 0.821 | 0.469 | 1.2e-257 | |
| UNIPROTKB|Q0JCP1 | 1259 | Os04g0459000 "Os04g0459000 pro | 0.959 | 0.820 | 0.460 | 5e-250 | |
| TAIR|locus:2010464 | 1245 | ABCB13 "ATP-binding cassette B | 0.948 | 0.820 | 0.473 | 8.1e-250 | |
| TAIR|locus:2057961 | 1286 | ABCB1 "ATP-binding cassette B1 | 0.637 | 0.534 | 0.463 | 1.1e-249 | |
| TAIR|locus:2010444 | 1247 | ABCB14 "ATP-binding cassette B | 0.953 | 0.823 | 0.468 | 3.6e-247 | |
| UNIPROTKB|Q7EZL2 | 1344 | P0705A05.112-2 "Putative P-gly | 0.957 | 0.767 | 0.439 | 9.9e-240 | |
| TAIR|locus:2041434 | 1286 | ABCB4 "ATP-binding cassette B4 | 0.532 | 0.446 | 0.466 | 1.5e-214 |
| TAIR|locus:2120805 ABCB2 "ATP-binding cassette B2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 4071 (1438.1 bits), Expect = 0., P = 0.
Identities = 805/1036 (77%), Positives = 900/1036 (86%)
Query: 41 VSLFKLFAFADFYDYILMSLGSIGACVHGVSVPVFFIFFGKLINIIGLAYLFPKTASHKV 100
VSL KLF+FADFYD +LM+LGS+GAC+HG SVP+FFIFFGKLINIIGLAYLFPK ASH+V
Sbjct: 60 VSLLKLFSFADFYDCVLMTLGSVGACIHGASVPIFFIFFGKLINIIGLAYLFPKQASHRV 119
Query: 101 AKYSLDFVYLSVAILFSSWIEVSCWMYTGERQAAKMRMAYLRSMLNQDISLFDTEASTGE 160
AKYSLDFVYLSVAILFSSW+EV+CWM+TGERQAAKMR AYLRSML+QDISLFDTEASTGE
Sbjct: 120 AKYSLDFVYLSVAILFSSWLEVACWMHTGERQAAKMRRAYLRSMLSQDISLFDTEASTGE 179
Query: 161 VISAITSDIIVVQDALSEKVGNFMHYISRFLGGFIIGFARVWQISLVTLSIVPLIALAGG 220
VISAITSDI+VVQDALSEKVGNF+HYISRF+ GF IGF VWQISLVTLSIVPLIALAGG
Sbjct: 180 VISAITSDILVVQDALSEKVGNFLHYISRFIAGFAIGFTSVWQISLVTLSIVPLIALAGG 239
Query: 221 MYAYVTIGLIARVRKSYVKAGEIAEEVIGNVRTVQAFAGEDKAVKVYKEALSNTXXXXXX 280
+YA+V IGLIARVRKSY+KAGEIAEEVIGNVRTVQAF GE++AV++Y+EAL NT
Sbjct: 240 IYAFVAIGLIARVRKSYIKAGEIAEEVIGNVRTVQAFTGEERAVRLYREALENTYKYGRK 299
Query: 281 XXXXXXXXXXSMHCXXXXXXXXXXXXXXXXXHKHISNGGESFTTMLNVVIAGLSLGQAAP 340
SMHC HK I++GG+SFTTMLNVVIAGLSLGQAAP
Sbjct: 300 AGLTKGLGLGSMHCVLFLSWALLVWFTSVVVHKDIADGGKSFTTMLNVVIAGLSLGQAAP 359
Query: 341 DITAFIRAKAAAYPIFEMIERDTMSKASSKTGRKLDKLSGHIEFKDVSFCYPSRPDVAIF 400
DI+AF+RAKAAAYPIF+MIER+T++K S+K+GRKL K+ GHI+FKD +F YPSRPDV IF
Sbjct: 360 DISAFVRAKAAAYPIFKMIERNTVTKTSAKSGRKLGKVDGHIQFKDATFSYPSRPDVVIF 419
Query: 401 DKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQI 460
D+ L IPAGKIVALVGGSGSGKSTVISLIERFYEP+SG +LLDGNNI LD+KWLR QI
Sbjct: 420 DRLNLAIPAGKIVALVGGSGSGKSTVISLIERFYEPISGAVLLDGNNISELDIKWLRGQI 479
Query: 461 GLVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQ 520
GLVNQEPALFATTIRENILYGKDDAT EEITRAAKLSEA+SFI+NLPE FETQVGERGIQ
Sbjct: 480 GLVNQEPALFATTIRENILYGKDDATAEEITRAAKLSEAISFINNLPEGFETQVGERGIQ 539
Query: 521 LSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLS 580
LSGGQKQRIAISRAIVKNPSILLLDEATSALDAESE SVQEALDRVMVGRTTVVVAHRLS
Sbjct: 540 LSGGQKQRIAISRAIVKNPSILLLDEATSALDAESEKSVQEALDRVMVGRTTVVVAHRLS 599
Query: 581 TIRNADVIAVVQGRKIVKTGSHEELISNPNSAYAALVXXXXXXXXXXXXXXCPNMGRPLS 640
T+RNAD+IAVV KIV+ G+HE LISNP+ AY++L+ + RP S
Sbjct: 600 TVRNADIIAVVHEGKIVEFGNHENLISNPDGAYSSLLRLQETASLQRNPSLNRTLSRPHS 659
Query: 641 IKFSRELSGTRTSFGASFRSEKESVLSHGAADATEPATAKHVSAIKLYSMVRPDWTYGVC 700
IK+SRELS TR+SF SE+ESV AD P+ V+ +LYSM+RPDW YGVC
Sbjct: 660 IKYSRELSRTRSSFC----SERESVTRPDGAD---PSKKVKVTVGRLYSMIRPDWMYGVC 712
Query: 701 GTICAIIAGAQMPLFALGVSQALVAYYMDWDTTQREVKKITILFCCAAVITVIVHAIEHL 760
GTICA IAG+QMPLFALGVSQALV+YY WD TQ+E+KKI ILFCCA+VIT+IV+ IEH+
Sbjct: 713 GTICAFIAGSQMPLFALGVSQALVSYYSGWDETQKEIKKIAILFCCASVITLIVYTIEHI 772
Query: 761 SFGIMGERLTLRVREKMFSAILSNEIGWFDEMDNSSSILASRLESDATLLRTIVVDRSTI 820
FG MGERLTLRVRE MF AIL NEIGWFDE+DN+SS+LASRLESDATLL+TIVVDRSTI
Sbjct: 773 CFGTMGERLTLRVRENMFRAILKNEIGWFDEVDNTSSMLASRLESDATLLKTIVVDRSTI 832
Query: 821 LIQNFGLVTASFVIAFILNWRITLVVVATYPLIISGHISEKLFFQGYGGNLSKAYLKANM 880
L+QN GLV SF+IAFILNWR+TLVV+ATYPL+ISGHISEKLF QGYGG+L+KAYLKANM
Sbjct: 833 LLQNLGLVVTSFIIAFILNWRLTLVVLATYPLVISGHISEKLFMQGYGGDLNKAYLKANM 892
Query: 881 LAAEAVSNIRTVAAFCSEDKVLELYSRELVEPSKRSFIRGQIAGIFYGISQFFIFSSYGL 940
LA E+VSNIRTVAAFC+E+K+LELYSREL+EPSK SF RGQIAG+FYG+SQFFIFSSYGL
Sbjct: 893 LAGESVSNIRTVAAFCAEEKILELYSRELLEPSKSSFRRGQIAGLFYGVSQFFIFSSYGL 952
Query: 941 ALWYGSVLMGKELASFKSVMKSFMVLIVTALAMGETLALVPDLLKGNQMAASVFEVLDRK 1000
ALWYGS LM K LA FKSVMK+FMVLIVTALAMGETLAL PDLLKGNQM ASVFE+LDRK
Sbjct: 953 ALWYGSTLMDKGLAGFKSVMKTFMVLIVTALAMGETLALAPDLLKGNQMVASVFEILDRK 1012
Query: 1001 TQVIGDIGEELTNVEGTIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKS 1060
TQ++G+ EEL NVEGTIEL+GVHFSYPSRP+VVIF+DF+L VRAGKSMALVGQSGSGKS
Sbjct: 1013 TQIVGETSEELNNVEGTIELKGVHFSYPSRPDVVIFRDFDLIVRAGKSMALVGQSGSGKS 1072
Query: 1061 TVLSLILRFYDPTAGK 1076
+V+SLILRFYDPTAGK
Sbjct: 1073 SVISLILRFYDPTAGK 1088
|
|
| UNIPROTKB|Q8GU75 mdr11 "MDR-like ABC transporter" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
Score = 3882 (1371.6 bits), Expect = 0., P = 0.
Identities = 758/1040 (72%), Positives = 886/1040 (85%)
Query: 41 VSLFKLFAFADFYDYILMSLGSIGACVHGVSVPVFFIFFGKLINIIGLAYLFPKTASHKV 100
V KLF+FAD +DY+LM++GS+GAC HG SVPVFFIFFGKLINIIGLAYLFP T S +V
Sbjct: 35 VPFLKLFSFADRWDYVLMAVGSLGACAHGASVPVFFIFFGKLINIIGLAYLFPTTVSGRV 94
Query: 101 AKYSLDFVYLSVAILFSSWIEVSCWMYTGERQAAKMRMAYLRSMLNQDISLFDTEASTGE 160
AKYSLDFVYL + ILFSSW EV+CWM+TGERQAAKMR AYLRSML+QDI++FDTEASTGE
Sbjct: 95 AKYSLDFVYLGIVILFSSWTEVACWMHTGERQAAKMRQAYLRSMLDQDIAVFDTEASTGE 154
Query: 161 VISAITSDIIVVQDALSEKVGNFMHYISRFLGGFIIGFARVWQISLVTLSIVPLIALAGG 220
VI+AITSDI+VVQDA+SEKVGNFMHYISRFL GF IGF++VWQISLVTL+IVPLIA+AGG
Sbjct: 155 VINAITSDILVVQDAISEKVGNFMHYISRFLAGFAIGFSQVWQISLVTLAIVPLIAIAGG 214
Query: 221 MYAYVTIGLIARVRKSYVKAGEIAEEVIGNVRTVQAFAGEDKAVKVYKEALSNTXXXXXX 280
+YAYVTIGL+ARVRKSYVKAGEIAEEVIGNVRTVQAF GE+KAV+ Y+EAL T
Sbjct: 215 IYAYVTIGLMARVRKSYVKAGEIAEEVIGNVRTVQAFVGEEKAVRTYREALLRTYKYGKR 274
Query: 281 XXXXXXXXXXSMHCXXXXXXXXXXXXXXXXXHKHISNGGESFTTMLNVVIAGLSLGQAAP 340
SMH HK+ISNGGESFTTMLNVVIAGLSLGQAAP
Sbjct: 275 GGLAKGLGLGSMHSVLFLSWALLIWFTSVVVHKNISNGGESFTTMLNVVIAGLSLGQAAP 334
Query: 341 DITAFIRAKAAAYPIFEMIERDTMSKASSKTGRKLDKLSGHIEFKDVSFCYPSRPDVAIF 400
+I+ F+RA+ AAYPIF+MIER+T++KASSK GR L + GHI+F+DV F YPSRPDV I
Sbjct: 335 NISTFLRARTAAYPIFQMIERNTVNKASSKAGRTLPSVDGHIQFRDVRFAYPSRPDVVIL 394
Query: 401 DKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQI 460
D+F LD PAGKIVALVGGSGSGKSTV+SLIERFYEPL+G +LLDG++IK LD+KWLRQQI
Sbjct: 395 DRFSLDFPAGKIVALVGGSGSGKSTVVSLIERFYEPLTGAVLLDGHDIKDLDVKWLRQQI 454
Query: 461 GLVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQ 520
GLVNQEPALFAT+IRENILYGK DA+M+EI AAKLSEA++FI++LP+R+ETQVGERGIQ
Sbjct: 455 GLVNQEPALFATSIRENILYGKGDASMDEINHAAKLSEAITFINHLPDRYETQVGERGIQ 514
Query: 521 LSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLS 580
LSGGQKQRIAISRAI+KNPSILLLDEATSALDAESE SVQEALDRVMVGRTTVV+AHRLS
Sbjct: 515 LSGGQKQRIAISRAILKNPSILLLDEATSALDAESEKSVQEALDRVMVGRTTVVIAHRLS 574
Query: 581 TIRNADVIAVVQGRKIVKTGSHEELISNPNSAYAALVXXXXXXXXXX--XXXXCPNMGRP 638
TIRNAD IAVV +IV+TG+HE+L++NP SAYA+L+ ++ RP
Sbjct: 575 TIRNADTIAVVDSGRIVETGTHEQLMANPRSAYASLIQLQEAAQLQNKQSFSDSASLSRP 634
Query: 639 LSIKFSRELSGTRTSFGASFRSEKESVLSHGAADATEPA--TAKHVSAIKLYSMVRPDWT 696
LS K+SRELS RTS G SFRSEK+SV +G +A + +K VS KLYSM+RPDW
Sbjct: 635 LSSKYSRELS--RTSMGGSFRSEKDSVSRYGTVEAHDEGGHKSKPVSMKKLYSMIRPDWF 692
Query: 697 YGVCGTICAIIAGAQMPLFALGVSQALVAYYMDWDTTQREVKKITILFCCAAVITVIVHA 756
+GV GT+ A +AG+QMPLFALGV+QALV+YYM W+TT+REV+KI +LFCC AV+TV+ HA
Sbjct: 693 FGVSGTVSAFVAGSQMPLFALGVTQALVSYYMGWETTKREVRKIAVLFCCGAVLTVVFHA 752
Query: 757 IEHLSFGIMGERLTLRVREKMFSAILSNEIGWFDEMDNSSSILASRLESDATLLRTIVVD 816
IEHLSFGIMGERLTLRVRE+MF+AIL NEIGWFD+ ++SS+L+SRLE+DATL+RTIVVD
Sbjct: 753 IEHLSFGIMGERLTLRVRERMFAAILRNEIGWFDDTSHTSSMLSSRLETDATLVRTIVVD 812
Query: 817 RSTILIQNFGLVTASFVIAFILNWRITLVVVATYPLIISGHISEKLFFQGYGGNLSKAYL 876
RSTIL+QN G++ S +IAFI+NWRITLVV+ATYPL++SGHISEK+F +GYGGNL K+YL
Sbjct: 813 RSTILLQNIGMIVTSLIIAFIINWRITLVVLATYPLMVSGHISEKMFMKGYGGNLGKSYL 872
Query: 877 KANMLAAEAVSNIRTVAAFCSEDKVLELYSRELVEPSKRSFIRGQIAGIFYGISQFFIFS 936
KANMLAAEAVSNIRTVAAFC+E+KV++LY+ EL EP+K+SF RGQ AG+FYG+SQFF+FS
Sbjct: 873 KANMLAAEAVSNIRTVAAFCAEEKVIKLYADELKEPAKQSFRRGQGAGLFYGVSQFFLFS 932
Query: 937 SYGLALWYGSVLMGKELASFKSVMKSFMVLIVTALAMGETLALVPDLLKGNQMAASVFEV 996
SY LALWYGS LM KE+ASFKSVMKSFMVLIVTALAMGETLA+ PD++KGNQM +SVFE+
Sbjct: 933 SYALALWYGSELMSKEMASFKSVMKSFMVLIVTALAMGETLAMAPDIIKGNQMVSSVFEI 992
Query: 997 LDRKTQVIGDIGEELTNVEGTIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSG 1056
LDRKT V+ D G ++ VEG IELRGV F YP+RPEVV+FK +L ++AGKSMALVG SG
Sbjct: 993 LDRKTDVLIDAGNDVKRVEGVIELRGVEFRYPARPEVVVFKGLDLLMKAGKSMALVGMSG 1052
Query: 1057 SGKSTVLSLILRFYDPTAGK 1076
SGKSTVLSLILRFYDP AGK
Sbjct: 1053 SGKSTVLSLILRFYDPIAGK 1072
|
|
| TAIR|locus:2019958 PGP10 "P-glycoprotein 10" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2643 (935.4 bits), Expect = 6.2e-275, P = 6.2e-275
Identities = 527/706 (74%), Positives = 607/706 (85%)
Query: 370 KTGRKLDKLSGHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISL 429
KTGRKL ++G I FKDV+F YPSRPDV IFDK IPAGK+VALVGGSGSGKST+ISL
Sbjct: 349 KTGRKLGNVNGDILFKDVTFTYPSRPDVVIFDKLNFVIPAGKVVALVGGSGSGKSTMISL 408
Query: 430 IERFYEPLSGEILLDGNNIKGLDLKWLRQQIGLVNQEPALFATTIRENILYGKDDATMEE 489
IERFYEP G ++LDGN+I+ LDLKWLR IGLVNQEP LFATTIRENI+YGKDDAT EE
Sbjct: 409 IERFYEPTDGAVMLDGNDIRYLDLKWLRGHIGLVNQEPVLFATTIRENIMYGKDDATSEE 468
Query: 490 ITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATS 549
IT AAKLSEA+SFI+NLPE FETQVGERGIQLSGGQKQRI+ISRAIVKNPSILLLDEATS
Sbjct: 469 ITNAAKLSEAISFINNLPEGFETQVGERGIQLSGGQKQRISISRAIVKNPSILLLDEATS 528
Query: 550 ALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRNADVIAVVQGRKIVKTGSHEELISNP 609
ALDAESE VQEALDRVMVGRTTVVVAHRLST+RNAD+IAVV G KI+++GSH+ELISNP
Sbjct: 529 ALDAESEKIVQEALDRVMVGRTTVVVAHRLSTVRNADIIAVVGGGKIIESGSHDELISNP 588
Query: 610 NSAYAALVXXXXXXXXXXXXXXCPNMGRPLSIKFSRELSGTRTSFGASFRSEKESVLSHG 669
+ AY++L+ P++ P+S K EL T T+ S +SV
Sbjct: 589 DGAYSSLLRIQEAASPNLNHT--PSL--PVSTKPLPELPITETT-----SSIHQSV---N 636
Query: 670 AADATEPATAKHVSAIKLYSMVRPDWTYGVCGTICAIIAGAQMPLFALGVSQALVAYYMD 729
D T+ A V+ +LYSM+RPDW YG+CGT+ + IAG+QMPLFALG++QALV+YYMD
Sbjct: 637 QPDTTKQAK---VTVGRLYSMIRPDWKYGLCGTLGSFIAGSQMPLFALGIAQALVSYYMD 693
Query: 730 WDTTQREVKKITILFCCAAVITVIVHAIEHLSFGIMGERLTLRVREKMFSAILSNEIGWF 789
W+TTQ EVK+I+ILFCC +VITVIVH IEH +FGIMGERLTLRVR+KMFSAIL NEIGWF
Sbjct: 694 WETTQNEVKRISILFCCGSVITVIVHTIEHTTFGIMGERLTLRVRQKMFSAILRNEIGWF 753
Query: 790 DEMDNSSSILASRLESDATLLRTIVVDRSTILIQNFGLVTASFVIAFILNWRITLVVVAT 849
D++DN+SS+LASRLESDATLLRTIVVDRSTIL++N GLV +F+I+FILNWR+TLVV+AT
Sbjct: 754 DKVDNTSSMLASRLESDATLLRTIVVDRSTILLENLGLVVTAFIISFILNWRLTLVVLAT 813
Query: 850 YPLIISGHISEKLFFQGYGGNLSKAYLKANMLAAEAVSNIRTVAAFCSEDKVLELYSREL 909
YPLIISGHISEK+F QGYGGNLSKAYLKANMLA E++SNIRTV AFC+E+KVL+LYS+EL
Sbjct: 814 YPLIISGHISEKIFMQGYGGNLSKAYLKANMLAGESISNIRTVVAFCAEEKVLDLYSKEL 873
Query: 910 VEPSKRSFIRGQIAGIFYGISQFFIFSSYGLALWYGSVLMGKELASFKSVMKSFMVLIVT 969
+EPS+RSF RGQ+AGI YG+SQFFIFSSYGLALWYGS+LM K L+SF+SVMK+FMVLIVT
Sbjct: 874 LEPSERSFRRGQMAGILYGVSQFFIFSSYGLALWYGSILMEKGLSSFESVMKTFMVLIVT 933
Query: 970 ALAMGETLALVPDLLKGNQMAASVFEVLDRKTQVIGDIGEELTNVEGTIELRGVHFSYPS 1029
AL MGE LAL PDLLKGNQM SVFE+LDR+TQV+GD GEEL+NVEGTIEL+GVHFSYPS
Sbjct: 934 ALVMGEVLALAPDLLKGNQMVVSVFELLDRRTQVVGDTGEELSNVEGTIELKGVHFSYPS 993
Query: 1030 RPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAG 1075
RP+V IF DFNL V +GKSMALVGQSGSGKS+VLSL+LRFYDPTAG
Sbjct: 994 RPDVTIFSDFNLLVPSGKSMALVGQSGSGKSSVLSLVLRFYDPTAG 1039
|
|
| TAIR|locus:2090734 ABCB19 "ATP-binding cassette B19" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2480 (878.1 bits), Expect = 1.2e-257, P = 1.2e-257
Identities = 492/1047 (46%), Positives = 713/1047 (68%)
Query: 44 FKLFAFADFYDYILMSLGSIGACVHGVSVPVFFIFFGKLINIIGLAYLFPKTASHKVAKY 103
FKLF+FAD +DY+LM +GS+GA VHG S+PVFF+ FG+++N G + H+V++Y
Sbjct: 27 FKLFSFADKFDYLLMFVGSLGAIVHGSSMPVFFLLFGQMVNGFGKNQMDLHQMVHEVSRY 86
Query: 104 SLDFVYLSVAILFSSWIEVSCWMYTGERQAAKMRMAYLRSMLNQDISLFDTEASTGEVIS 163
SL FVYL + + FSS+ E++CWMY+GERQ A +R YL ++L QD+ FDT+A TG+++
Sbjct: 87 SLYFVYLGLVVCFSSYAEIACWMYSGERQVAALRKKYLEAVLKQDVGFFDTDARTGDIVF 146
Query: 164 AITSDIIVVQDALSEKVGNFMHYISRFLGGFIIGFARVWQISLVTLSIVPLIALAGGMYA 223
++++D ++VQDA+SEKVGNF+HY+S FL G ++GF W+++L++++++P IA AGG+YA
Sbjct: 147 SVSTDTLLVQDAISEKVGNFIHYLSTFLAGLVVGFVSAWKLALLSVAVIPGIAFAGGLYA 206
Query: 224 YVTIGLIARVRKSYVKAGEIAEEVIGNVRTVQAFAGEDKAVKVYKEALSNTXXXXXXXXX 283
Y G+ ++ R+SY AG IAE+ I VRTV ++ GE KA+ Y +A+ T
Sbjct: 207 YTLTGITSKSRESYANAGVIAEQAIAQVRTVYSYVGESKALNAYSDAIQYTLKLGYKAGM 266
Query: 284 XXXXXXXSMHCXXXXXXXXXXXXXXXXXHKHISNGGESFTTMLNVVIAGLSLGQAAPDIT 343
+ ++GG++FT + + ++ G+SLGQ+ ++
Sbjct: 267 AKGLGLGCTYGIACMSWALVFWYAGVFIRNGQTDGGKAFTAIFSAIVGGMSLGQSFSNLG 326
Query: 344 AFIRAKAAAYPIFEMI-ERDTMSKASSKTGRKLDKLSGHIEFKDVSFCYPSRPDVAIFDK 402
AF + KAA Y + E+I +R T+ + G+ LD++ G+IEFKDV+F YPSRPDV IF
Sbjct: 327 AFSKGKAAGYKLMEIINQRPTIIQ-DPLDGKCLDQVHGNIEFKDVTFSYPSRPDVMIFRN 385
Query: 403 FCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIGL 462
F + P+GK VA+VGGSGSGKSTV+SLIERFY+P SG+ILLDG IK L LK+LR+QIGL
Sbjct: 386 FNIFFPSGKTVAVVGGSGSGKSTVVSLIERFYDPNSGQILLDGVEIKTLQLKFLREQIGL 445
Query: 463 VNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLS 522
VNQEPALFATTI ENILYGK DATM E+ AA + A SFI+ LP+ ++TQVGERG+QLS
Sbjct: 446 VNQEPALFATTILENILYGKPDATMVEVEAAASAANAHSFITLLPKGYDTQVGERGVQLS 505
Query: 523 GGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTI 582
GGQKQRIAI+RA++K+P ILLLDEATSALDA SE+ VQEALDRVMVGRTTVVVAHRL TI
Sbjct: 506 GGQKQRIAIARAMLKDPKILLLDEATSALDASSESIVQEALDRVMVGRTTVVVAHRLCTI 565
Query: 583 RNADVIAVVQGRKIVKTGSHEELISNPNSAYAALVXXXXXXXXXXXXXXCPNMGRPLSIK 642
RN D IAV+Q ++V+TG+HEELI+ + AYA+L+ P+ R S +
Sbjct: 566 RNVDSIAVIQQGQVVETGTHEELIAK-SGAYASLIRFQEMVGTRDFSN--PSTRRTRSTR 622
Query: 643 FSRELSGTRTSF-GASFRSEKESVLSHGA---------ADATEPATAKHVSAIKLYSMVR 692
S LS S S R+ S S GA A+ A +L +
Sbjct: 623 LSHSLSTKSLSLRSGSLRNLSYSY-STGADGRIEMISNAETDRKTRAPENYFYRLLKLNS 681
Query: 693 PDWTYGVCGTICAIIAGAQMPLFALGVSQAL-VAYYMDWDTTQREVKKITILFCCAAVIT 751
P+W Y + G + +I++G P FA+ +S + V YY D+D+ +R+ K+ ++ A +
Sbjct: 682 PEWPYSIMGAVGSILSGFIGPTFAIVMSNMIEVFYYTDYDSMERKTKEYVFIYIGAGLYA 741
Query: 752 VIVHAIEHLSFGIMGERLTLRVREKMFSAILSNEIGWFDEMDNSSSILASRLESDATLLR 811
V + I+H F IMGE LT RVR M SAIL NE+GWFDE +++SS++A+RL +DA ++
Sbjct: 742 VGAYLIQHYFFSIMGENLTTRVRRMMLSAILRNEVGWFDEDEHNSSLIAARLATDAADVK 801
Query: 812 TIVVDRSTILIQNFGLVTASFVIAFILNWRITLVVVATYPLIISGHISEKLFFQGYGGNL 871
+ + +R ++++QN + SF++AFI+ WR++L+++ T+PL++ + +++L +G+ G+
Sbjct: 802 SAIAERISVILQNMTSLLTSFIVAFIVEWRVSLLILGTFPLLVLANFAQQLSLKGFAGDT 861
Query: 872 SKAYLKANMLAAEAVSNIRTVAAFCSEDKVLELYSRELVEPSKRSFIRGQIAGIFYGISQ 931
+KA+ K +M+A E VSNIRTVAAF ++ K+L L+ EL P KRS R Q +G +G+SQ
Sbjct: 862 AKAHAKTSMIAGEGVSNIRTVAAFNAQSKILSLFCHELRVPQKRSLYRSQTSGFLFGLSQ 921
Query: 932 FFIFSSYGLALWYGSVLMGKELASFKSVMKSFMVLIVTALAMGETLALVPDLLKGNQMAA 991
++ S L LWYG+ L+ K +++F V+K F+VL++TA ++ ET++L P++++G +
Sbjct: 922 LALYGSEALILWYGAHLVSKGVSTFSKVIKVFVVLVITANSVAETVSLAPEIIRGGEAVG 981
Query: 992 SVFEVLDRKTQVIGDIGEE--LTNVEGTIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSM 1049
SVF VLDR+T++ D + + + G IE R V F+YPSRP+V++F+DFNL++RAG S
Sbjct: 982 SVFSVLDRQTRIDPDDADADPVETIRGDIEFRHVDFAYPSRPDVMVFRDFNLRIRAGHSQ 1041
Query: 1050 ALVGQSGSGKSTVLSLILRFYDPTAGK 1076
ALVG SGSGKS+V+++I RFYDP AGK
Sbjct: 1042 ALVGASGSGKSSVIAMIERFYDPLAGK 1068
|
|
| UNIPROTKB|Q0JCP1 Os04g0459000 "Os04g0459000 protein" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
Score = 2408 (852.7 bits), Expect = 5.0e-250, P = 5.0e-250
Identities = 484/1050 (46%), Positives = 705/1050 (67%)
Query: 41 VSLFKLFAFADFYDYILMSLGSIGACVHGVSVPVFFIFFGKLINIIGLAYLFPKTASHKV 100
V+ +LF FAD D++LM+ GS GA VHG ++PVFF+ FG+LIN G + + +V
Sbjct: 29 VAFHELFGFADPLDWLLMAAGSAGAVVHGAAMPVFFLLFGELINGFGKNQHSLRRMTDEV 88
Query: 101 AKYSLDFVYLSVAILFSSWIEVSCWMYTGERQAAKMRMAYLRSMLNQDISLFDTEASTGE 160
+KYSL FVYL + + SS++E++CWMYTGERQ +R YL ++L QD+ FDT+A TG+
Sbjct: 89 SKYSLYFVYLGLVVCASSYLEIACWMYTGERQVGALRRRYLEAVLRQDVGFFDTDARTGD 148
Query: 161 VISAITSDIIVVQDALSEKVGNFMHYISRFLGGFIIGFARVWQISLVTLSIVPLIALAGG 220
V+ ++++D ++VQDA+ EKVGNF+HY+S FL G ++GF W+++L++++++P IA AGG
Sbjct: 149 VVFSVSTDTLLVQDAIGEKVGNFIHYLSTFLAGLVVGFVSAWRLALLSIAVIPGIAFAGG 208
Query: 221 MYAYVTIGLIARVRKSYVKAGEIAEEVIGNVRTVQAFAGEDKAVKVYKEALSNTXXXXXX 280
+YAY GL ++ R SY AG IAE+ I VRTV ++ GE KA+ Y EA+ NT
Sbjct: 209 LYAYTLTGLTSKSRDSYANAGIIAEQAIAQVRTVYSYVGESKALNSYSEAIQNTLKLGYK 268
Query: 281 XXXXXXXXXXSMHCXXXXXXXXXXXXXXXXXHKHISNGGESFTTMLNVVIAGLSLGQAAP 340
+ ++GG++FT + + ++ GLSLGQ+
Sbjct: 269 AGMAKGLGIGCTYGIACMSWALVFWYAGVFIRNGQTDGGKAFTAIFSAIVGGLSLGQSFS 328
Query: 341 DITAFIRAKAAAYPIFEMI-ERDTMSKASSKTGRKLDKLSGHIEFKDVSFCYPSRPDVAI 399
++ AF + K A Y + E+I +R T+ + + GR LD++ G+IEFK+V+F YPSRPDV I
Sbjct: 329 NLGAFSKGKIAGYKLLEVIRQRPTIVQDPAD-GRCLDEVHGNIEFKEVAFSYPSRPDVMI 387
Query: 400 FDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQ 459
F F L PAGK A+VGGSGSGKSTV++LIERFY+P G++LLD +IK L LKWLR Q
Sbjct: 388 FRDFSLFFPAGKTAAVVGGSGSGKSTVVALIERFYDPNQGQVLLDNVDIKTLQLKWLRDQ 447
Query: 460 IGLVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGI 519
IGLVNQEPALFATTI ENILYGK DATM E+ AA + A SFI+ LP + TQVGERG+
Sbjct: 448 IGLVNQEPALFATTILENILYGKPDATMAEVEAAATSANAHSFIALLPNGYNTQVGERGL 507
Query: 520 QLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRL 579
QLSGGQKQRIAI+RA++KNP ILLLDEATSALDA SEN VQEALDR+MVGRTTVVVAHRL
Sbjct: 508 QLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSENIVQEALDRLMVGRTTVVVAHRL 567
Query: 580 STIRNADVIAVVQGRKIVKTGSHEELISNPNS-AYAALVXXXXXXXXXXXXXXCPNMGRP 638
STIR D+IAV+Q ++V+TG+H+EL++ +S AYAAL+ R
Sbjct: 568 STIRCVDMIAVIQQGQVVETGTHDELLAKGSSGAYAALIRFQEMARNRDFRGPSTRKSRS 627
Query: 639 --LSIKFS-RELS---GTRTSFGASFRSEKES---VLSHGAADATEPATAKHVSAIKLYS 689
LS S R LS G+ + S+ + + ++S+ D PA + KL
Sbjct: 628 SRLSNSLSTRSLSLRSGSLRNLSYSYSTGADGRIEMVSNADNDRKYPAPKGYF--FKLLK 685
Query: 690 MVRPDWTYGVCGTICAIIAGAQMPLFALGVSQAL-VAYYMDWDTTQREVKKITILFCCAA 748
+ P+W Y + G I +I++G P FA+ +S + V Y+ D + +R+ ++ ++
Sbjct: 686 LNAPEWPYTILGAIGSILSGFIGPTFAIVMSNMIEVFYFRDPNAMERKTREYVFIYIGTG 745
Query: 749 VITVIVHAIEHLSFGIMGERLTLRVREKMFSAILSNEIGWFDEMDNSSSILASRLESDAT 808
+ V+ + ++H F IMGE LT RVR M +AIL N++GWFD+ +N+SS++A+RL +DA
Sbjct: 746 LYAVVAYLVQHYFFSIMGENLTTRVRRMMLAAILRNDVGWFDQEENNSSLVAARLSTDAA 805
Query: 809 LLRTIVVDRSTILIQNFGLVTASFVIAFILNWRITLVVVATYPLIISGHISEKLFFQGYG 868
+++ + +R ++++QN + SFV+ FI+ WR+ ++++ T+PL++ + +++L +G+
Sbjct: 806 DVKSAIAERISVILQNMTSLLVSFVVGFIIEWRVAVLILVTFPLLVLANFAQQLSMKGFA 865
Query: 869 GNLSKAYLKANMLAAEAVSNIRTVAAFCSEDKVLELYSRELVEPSKRSFIRGQIAGIFYG 928
G+ +KA+ K +M+A E VSNIRTVAAF ++DKVL L+ EL P S R QI+G +G
Sbjct: 866 GDTAKAHAKTSMIAGEGVSNIRTVAAFNAQDKVLSLFCTELRVPQMHSLRRSQISGALFG 925
Query: 929 ISQFFIFSSYGLALWYGSVLMGKELASFKSVMKSFMVLIVTALAMGETLALVPDLLKGNQ 988
+SQ +++S L LWYG+ L+ +++F V+K F+VL++TA + ET++L P++++G +
Sbjct: 926 LSQLSLYASEALILWYGAHLVRHHVSTFSKVIKVFVVLVITANTVAETVSLAPEIVRGGE 985
Query: 989 MAASVFEVLDRKTQVIGDIGEE--LTNVEGTIELRGVHFSYPSRPEVVIFKDFNLKVRAG 1046
SVF +L+ +T++ D E + +V G I+ R V F+YPSRP+V++FKDF+L++RAG
Sbjct: 986 SIRSVFAILNYRTRIDPDEPETEPVESVRGDIDFRHVDFAYPSRPDVMVFKDFSLRIRAG 1045
Query: 1047 KSMALVGQSGSGKSTVLSLILRFYDPTAGK 1076
+S ALVG SGSGKSTV++LI RFYDP AGK
Sbjct: 1046 QSQALVGASGSGKSTVIALIERFYDPLAGK 1075
|
|
| TAIR|locus:2010464 ABCB13 "ATP-binding cassette B13" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2406 (852.0 bits), Expect = 8.1e-250, P = 8.1e-250
Identities = 495/1046 (47%), Positives = 697/1046 (66%)
Query: 41 VSLFKLFAFADFYDYILMSLGSIGACVHGVSVPVFFIFFGKLINIIGLAYLFPKTASHKV 100
VSL LF+ AD DY LM LG +GAC+HG ++P+FF+FFGK+++ +G PK S +V
Sbjct: 30 VSLMGLFSAADKLDYFLMLLGGLGACIHGATLPLFFVFFGKMLDSLGNLSTDPKAISSRV 89
Query: 101 AKYSLDFVYLSVAILFSSWIEVSCWMYTGERQAAKMRMAYLRSMLNQDISLFDTEASTGE 160
++ +L VYL + S+WI VSCWM TGERQ A++R+ YL+S+L +DI+ FDTEA
Sbjct: 90 SQNALYLVYLGLVNFVSAWIGVSCWMQTGERQTARLRINYLKSILAKDITFFDTEARDSN 149
Query: 161 VISAITSDIIVVQDALSEKVGNFMHYISRFLGGFIIGFARVWQISLVTLSIVPLIALAGG 220
+I I+SD I+VQDA+ +K + + Y+S+F+ GF+IGF VWQ++L+TL +VPLIA+AGG
Sbjct: 150 LIFHISSDAILVQDAIGDKTDHVLRYLSQFIAGFVIGFLSVWQLTLLTLGVVPLIAIAGG 209
Query: 221 MYAYVTIGLIARVRKSYVKAGEIAEEVIGNVRTVQAFAGEDKAVKVYKEALSNTXXXXXX 280
YA V + + +Y AG++AEEV+ VRTV AF GE+KAVK Y +L
Sbjct: 210 GYAIVMSTISEKSETAYADAGKVAEEVMSQVRTVYAFVGEEKAVKSYSNSLKKALKLGKR 269
Query: 281 XXXXXXXXXXSMHCXXXXXXXXXXXXXXXXXHKHISNGGESFTTMLNVVIAGLSLGQAAP 340
+ +NG ++FTT+LNV+ +G +LGQAAP
Sbjct: 270 SGLAKGLGVGLTYSLLFCAWALLLWYASLLVRHGKTNGAKAFTTILNVIFSGFALGQAAP 329
Query: 341 DITAFIRAKAAAYPIFEMIERDTMSKASSKT--GRKLDKLSGHIEFKDVSFCYPSRPDVA 398
++A + + AA IF MI + S++S + G L ++G IEF+ VSF YPSRP++
Sbjct: 330 SLSAIAKGRVAAANIFRMIGNNN-SESSQRLDEGTTLQNVAGRIEFQKVSFAYPSRPNM- 387
Query: 399 IFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQ 458
+F+ I +GK A VG SGSGKST+IS+++RFYEP SGEILLDGN+IK L LKW R+
Sbjct: 388 VFENLSFTIRSGKTFAFVGPSGSGKSTIISMVQRFYEPNSGEILLDGNDIKSLKLKWFRE 447
Query: 459 QIGLVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERG 518
Q+GLV+QEPALFATTI NIL GK++A M++I AAK + A SFI +LP + TQVGE G
Sbjct: 448 QLGLVSQEPALFATTIASNILLGKENANMDQIIEAAKAANADSFIKSLPNGYNTQVGEGG 507
Query: 519 IQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHR 578
QLSGGQKQRIAI+RA+++NP ILLLDEATSALDAESE VQ+ALD VM RTT+VVAHR
Sbjct: 508 TQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESEKIVQQALDNVMEKRTTIVVAHR 567
Query: 579 LSTIRNADVIAVVQGRKIVKTGSHEELISNPNSAYAALVXXXXXX----XXXXXXXXCPN 634
LSTIRN D I V++ ++ +TGSH EL+ YA LV C +
Sbjct: 568 LSTIRNVDKIVVLRDGQVRETGSHSELMLRGGD-YATLVNCQETEPQENSRSIMSETCKS 626
Query: 635 MGRPLSIKFSRELSGTRTSFGASFRSEKESVLSHGAADATEPATAKHV--SAIKLYSMVR 692
S SR +S +R + +SFR ++E + D+ + ++ + IKL S
Sbjct: 627 QAGSSS---SRRVSSSRRT--SSFRVDQEKTKND---DSKKDFSSSSMIWELIKLNS--- 675
Query: 693 PDWTYGVCGTICAIIAGAQMPLFALGVSQALVAYYMDW-DTTQREVKKITILFCCAAVIT 751
P+W Y + G+I A++AGAQ PLF++G++ L A+Y + + +R+V+K+ I+F A ++T
Sbjct: 676 PEWPYALLGSIGAVLAGAQTPLFSMGIAYVLTAFYSPFPNVIKRDVEKVAIIFAGAGIVT 735
Query: 752 VIVHAIEHLSFGIMGERLTLRVREKMFSAILSNEIGWFDEMDNSSSILASRLESDATLLR 811
++ ++H + +MGERLT RVR +FSAILSNEIGWFD +N++ L S L +DATL+R
Sbjct: 736 APIYLLQHYFYTLMGERLTSRVRLSLFSAILSNEIGWFDLDENNTGSLTSILAADATLVR 795
Query: 812 TIVVDRSTILIQNFGLVTASFVIAFILNWRITLVVVATYPLIISGHISEKLFFQGYGGNL 871
+ + DR + ++QN L + +AF +WR+ VV A +PL+I+ ++E+LF +G+GG+
Sbjct: 796 SALADRLSTIVQNLSLTVTALALAFFYSWRVAAVVTACFPLLIAASLTEQLFLKGFGGDY 855
Query: 872 SKAYLKANMLAAEAVSNIRTVAAFCSEDKVLELYSRELVEPSKRSFIRGQIAGIFYGISQ 931
++AY +A +A EA++NIRTVAA+ +E ++ E ++ EL +P+K +F+RG I+G YG+SQ
Sbjct: 856 TRAYSRATSVAREAIANIRTVAAYGAEKQISEQFTCELSKPTKNAFVRGHISGFGYGLSQ 915
Query: 932 FFIFSSYGLALWYGSVLMGKELASFKSVMKSFMVLIVTALAMGETLALVPDLLKGNQMAA 991
F F SY L LWY SVL+ + +F +KSFMVLIVTA ++ ETLAL PD++KG Q
Sbjct: 916 FLAFCSYALGLWYVSVLINHKETNFGDSIKSFMVLIVTAFSVSETLALTPDIVKGTQALG 975
Query: 992 SVFEVLDRKTQVIGDIGEE--LTNVEGTIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSM 1049
SVF VL R+T++ D ++ V+G IE R V F YP+RPE+ IFK+ NL+V AGKS+
Sbjct: 976 SVFRVLHRETKISPDQPNSRMVSQVKGDIEFRNVSFVYPTRPEIDIFKNLNLRVSAGKSL 1035
Query: 1050 ALVGQSGSGKSTVLSLILRFYDPTAG 1075
A+VG SGSGKSTV+ LI+RFYDP+ G
Sbjct: 1036 AVVGPSGSGKSTVIGLIMRFYDPSNG 1061
|
|
| TAIR|locus:2057961 ABCB1 "ATP-binding cassette B1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1561 (554.6 bits), Expect = 1.1e-249, Sum P(2) = 1.1e-249
Identities = 326/703 (46%), Positives = 446/703 (63%)
Query: 41 VSLFKLFAFADFYDYILMSLGSIGACVHGVSVPVFFIFFGKLINIIGLAYLFPKTASHKV 100
V+ +LF FAD DY+LM +GS+GA VHG S+P+F FF L+N G + +V
Sbjct: 27 VAFKELFRFADGLDYVLMGIGSVGAFVHGCSLPLFLRFFADLVNSFGSNSNNVEKMMEEV 86
Query: 101 AKYSLDFVYLSVAILFSSWIEVSCWMYTGERQAAKMRMAYLRSMLNQDISLFDTEASTGE 160
KY+L F+ + AI SSW E+SCWM++GERQ KMR+ YL + LNQDI FDTE T +
Sbjct: 87 LKYALYFLVVGAAIWASSWAEISCWMWSGERQTTKMRIKYLEAALNQDIQFFDTEVRTSD 146
Query: 161 VISAITSDIIVVQDALSEKVGNFMHYISRFLGGFIIGFARVWQISLVTLSIVPLIALAGG 220
V+ AI +D ++VQDA+SEK+GNF+HY++ F+ GFI+GF VWQ++LVTL++VPLIA+ GG
Sbjct: 147 VVFAINTDAVMVQDAISEKLGNFIHYMATFVSGFIVGFTAVWQLALVTLAVVPLIAVIGG 206
Query: 221 MYAYVTIGLIARVRKSYVKAGEIAEEVIGNVRTVQAFAGEDKAVKVYKEALSNTXXXXXX 280
++ L + ++S +AG I E+ + +R V AF GE +A + Y AL
Sbjct: 207 IHTTTLSKLSNKSQESLSQAGNIVEQTVVQIRVVMAFVGESRASQAYSSALKIAQKLGYK 266
Query: 281 XXXXXXXXXXSMHCXXXXXXXXXXXXXXXXXHKHISNGGESFTTMLNVVIAGLSLGQAAP 340
+ + H++NGG + TM V+I GL+LGQ+AP
Sbjct: 267 TGLAKGMGLGATYFVVFCCYALLLWYGGYLVRHHLTNGGLAIATMFAVMIGGLALGQSAP 326
Query: 341 DITAFIRAKAAAYPIFEMIERDTMSKASSKTGRKLDKLSGHIEFKDVSFCYPSRPDVAIF 400
+ AF +AK AA IF +I+ + +S++G +LD ++G +E K+V F YPSRPDV I
Sbjct: 327 SMAAFAKAKVAAAKIFRIIDHKPTIERNSESGVELDSVTGLVELKNVDFSYPSRPDVKIL 386
Query: 401 DKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQI 460
+ FCL +PAGK +ALVG SGSGKSTV+SLIERFY+P SG++LLDG ++K L L+WLRQQI
Sbjct: 387 NNFCLSVPAGKTIALVGSSGSGKSTVVSLIERFYDPNSGQVLLDGQDLKTLKLRWLRQQI 446
Query: 461 GLVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQ 520
GLV+QEPALFAT+I+ENIL G+ DA EI AA+++ A SFI LP+ F+TQVGERG+Q
Sbjct: 447 GLVSQEPALFATSIKENILLGRPDADQVEIEEAARVANAHSFIIKLPDGFDTQVGERGLQ 506
Query: 521 LSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLS 580
LSGGQKQRIAI+RA++KNP+ILLLDEATSALD+ESE VQEALDR M+GRTT+++AHRLS
Sbjct: 507 LSGGQKQRIAIARAMLKNPAILLLDEATSALDSESEKLVQEALDRFMIGRTTLIIAHRLS 566
Query: 581 TIRNADVIAVVQGRKIVKTGSHEELISN-PNSAYAALVXXXXXXXXXXXXXXCPNMGRPL 639
TIR AD++AV+Q + + G+H+EL S N YA L+ + RP
Sbjct: 567 TIRKADLVAVLQQGSVSEIGTHDELFSKGENGVYAKLIKMQEAAHETAMSNARKSSARPS 626
Query: 640 SIK--FSRELSGTRTSFGASFRSEKESVLSHG----AADATE-PATAKHVSAIK------ 686
S + S + +S+G S S + S S + DA+ P A K
Sbjct: 627 SARNSVSSPIMTRNSSYGRSPYSRRLSDFSTSDFSLSIDASSYPNYRNEKLAFKDQANSF 686
Query: 687 --LYSMVRPDWTYGVCGTICAIIAGAQMPLFALGVSQALVAYY 727
L M P+W Y + G++ ++I G+ FA +S L YY
Sbjct: 687 WRLAKMNSPEWKYALLGSVGSVICGSLSAFFAYVLSAVLSVYY 729
|
|
| TAIR|locus:2010444 ABCB14 "ATP-binding cassette B14" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2381 (843.2 bits), Expect = 3.6e-247, P = 3.6e-247
Identities = 488/1041 (46%), Positives = 684/1041 (65%)
Query: 41 VSLFKLFAFADFYDYILMSLGSIGACVHGVSVPVFFIFFGKLINIIGLAYLFPKTASHKV 100
VSL LF+ AD DY LM LG +G C+HG ++P+FF+FFG +++ +G P S +V
Sbjct: 31 VSLMGLFSAADNVDYFLMFLGGLGTCIHGGTLPLFFVFFGGMLDSLGKLSTDPNAISSRV 90
Query: 101 AKYSLDFVYLSVAILFSSWIEVSCWMYTGERQAAKMRMAYLRSMLNQDISLFDTEASTGE 160
++ +L VYL + L S+WI V+CWM TGERQ A++R+ YL+S+L +DI+ FDTEA
Sbjct: 91 SQNALYLVYLGLVNLVSAWIGVACWMQTGERQTARLRINYLKSILAKDITFFDTEARDSN 150
Query: 161 VISAITSDIIVVQDALSEKVGNFMHYISRFLGGFIIGFARVWQISLVTLSIVPLIALAGG 220
I I+SD I+VQDA+ +K G+ + Y+ +F+ GF+IGF VWQ++L+TL +VPLIA+AGG
Sbjct: 151 FIFHISSDAILVQDAIGDKTGHVLRYLCQFIAGFVIGFLSVWQLTLLTLGVVPLIAIAGG 210
Query: 221 MYAYVTIGLIARVRKSYVKAGEIAEEVIGNVRTVQAFAGEDKAVKVYKEALSNTXXXXXX 280
YA V + + +Y AG++AEEV+ VRTV AF GE+KAVK Y +L
Sbjct: 211 GYAIVMSTISEKSEAAYADAGKVAEEVMSQVRTVYAFVGEEKAVKSYSNSLKKALKLSKR 270
Query: 281 XXXXXXXXXXSMHCXXXXXXXXXXXXXXXXXHKHISNGGESFTTMLNVVIAGLSLGQAAP 340
+ +NG ++FTT+LNV+ +G +LGQA P
Sbjct: 271 SGLAKGLGVGLTYSLLFCAWALLFWYASLLVRHGKTNGAKAFTTILNVIYSGFALGQAVP 330
Query: 341 DITAFIRAKAAAYPIFEMIERDTMSKASS-KTGRKLDKLSGHIEFKDVSFCYPSRPDVAI 399
++A + + AA IF+MI + + + + G L + G IEF VSF YPSRP++ +
Sbjct: 331 SLSAISKGRVAAANIFKMIGNNNLESSERLENGTTLQNVVGKIEFCGVSFAYPSRPNM-V 389
Query: 400 FDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQ 459
F+ I +GK A VG SGSGKST+IS+++RFYEP SGEILLDGN+IK L LKWLR+Q
Sbjct: 390 FENLSFTIHSGKTFAFVGPSGSGKSTIISMVQRFYEPRSGEILLDGNDIKNLKLKWLREQ 449
Query: 460 IGLVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGI 519
+GLV+QEPALFATTI NIL GK+ A M++I AAK + A SFI +LP + TQVGE G
Sbjct: 450 MGLVSQEPALFATTIASNILLGKEKANMDQIIEAAKAANADSFIKSLPNGYNTQVGEGGT 509
Query: 520 QLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRL 579
QLSGGQKQRIAI+RA+++NP ILLLDEATSALDAESE VQ+ALD VM RTT+V+AHRL
Sbjct: 510 QLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESEKIVQQALDNVMEKRTTIVIAHRL 569
Query: 580 STIRNADVIAVVQGRKIVKTGSHEELISNPNSAYAALVXXXXXXXXXXXXXXCPNMGRPL 639
STIRN D I V++ ++ +TGSH ELIS YA LV R
Sbjct: 570 STIRNVDKIVVLRDGQVRETGSHSELISRGGD-YATLVNCQDTEPQENLRSVMYESCRSQ 628
Query: 640 SIKFS--RELSGTRTSFGASFRSEKESVLSHGAADATEPATAKHVSAIKLYSMVRPDWTY 697
+ +S R S RTS SFR ++E + +++ IKL + P+W Y
Sbjct: 629 AGSYSSRRVFSSRRTS---SFREDQEKTEKDSKGEDLISSSSMIWELIKLNA---PEWLY 682
Query: 698 GVCGTICAIIAGAQMPLFALGVSQALVAYYMDWDTT-QREVKKITILFCCAAVITVIVHA 756
+ G+I A++AG+Q LF++G++ L +Y + + +REV K+ I+F A ++T ++
Sbjct: 683 ALLGSIGAVLAGSQPALFSMGLAYVLTTFYSPFPSLIKREVDKVAIIFVGAGIVTAPIYI 742
Query: 757 IEHLSFGIMGERLTLRVREKMFSAILSNEIGWFDEMDNSSSILASRLESDATLLRTIVVD 816
++H + +MGERLT RVR +FSAILSNEIGWFD +N++ L S L +DATL+R+ + D
Sbjct: 743 LQHYFYTLMGERLTSRVRLSLFSAILSNEIGWFDLDENNTGSLTSILAADATLVRSAIAD 802
Query: 817 RSTILIQNFGLVTASFVIAFILNWRITLVVVATYPLIISGHISEKLFFQGYGGNLSKAYL 876
R + ++QN L + +AF +WR+ VV A +PL+I+ ++E+LF +G+GG+ ++AY
Sbjct: 803 RLSTIVQNLSLTITALALAFFYSWRVAAVVTACFPLLIAASLTEQLFLKGFGGDYTRAYS 862
Query: 877 KANMLAAEAVSNIRTVAAFCSEDKVLELYSRELVEPSKRSFIRGQIAGIFYGISQFFIFS 936
+A LA EA+SNIRTVAAF +E ++ E ++ EL +P+K + +RG I+G YG+SQ F
Sbjct: 863 RATSLAREAISNIRTVAAFSAEKQISEQFTCELSKPTKSALLRGHISGFGYGLSQCLAFC 922
Query: 937 SYGLALWYGSVLMGKELASFKSVMKSFMVLIVTALAMGETLALVPDLLKGNQMAASVFEV 996
SY L LWY SVL+ + +F+ +KSFMVL+VTA ++ ETLAL PD++KG Q SVF V
Sbjct: 923 SYALGLWYISVLIKRNETNFEDSIKSFMVLLVTAYSVAETLALTPDIVKGTQALGSVFRV 982
Query: 997 LDRKTQVIGDIGEE--LTNVEGTIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQ 1054
L R+T++ D +T+++G IE R V F+YP+RPE+ IFK+ NL+V AGKS+A+VG
Sbjct: 983 LHRETEIPPDQPNSRLVTHIKGDIEFRNVSFAYPTRPEIAIFKNLNLRVSAGKSLAVVGP 1042
Query: 1055 SGSGKSTVLSLILRFYDPTAG 1075
SGSGKSTV+ LI+RFYDP+ G
Sbjct: 1043 SGSGKSTVIGLIMRFYDPSNG 1063
|
|
| UNIPROTKB|Q7EZL2 P0705A05.112-2 "Putative P-glycoprotein 1" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
Score = 2294 (812.6 bits), Expect = 9.9e-240, Sum P(2) = 9.9e-240
Identities = 462/1051 (43%), Positives = 681/1051 (64%)
Query: 43 LFKLFAFADFYDYILMSLGSIGACVHGVSVPVFFIFFGKLINIIGLAYLFPKTASHKVAK 102
L +LF+FAD DY+LM+LG++GA VHG S+PVF FF L++ G P T V K
Sbjct: 95 LRQLFSFADGLDYVLMTLGTLGALVHGCSLPVFLRFFADLVDSFGSHAAHPDTMLRLVVK 154
Query: 103 YSLDFVYLSVAILFSSWIEVSCWMYTGERQAAKMRMAYLRSMLNQDISLFDTEASTGEVI 162
Y+ F+ + AI SSW E+SCWM+TGERQ+ +MR+ YL + L+QD+S FDT+ T +VI
Sbjct: 155 YAFYFLVVGAAIWASSWAEISCWMWTGERQSTRMRIRYLHAALHQDVSFFDTDVRTSDVI 214
Query: 163 SAITSDIIVVQDALSEKVGNFMHYISRFLGGFIIGFARVWQISLVTLSIVPLIALAGGMY 222
AI +D +VVQDA+SEK+GN +HY++ F+ GF++GF WQ++LVTL++VPLIA+ GG+
Sbjct: 215 HAINADAVVVQDAISEKLGNLIHYLATFVSGFVVGFTAAWQLALVTLAVVPLIAVIGGLS 274
Query: 223 AYVTIGLIARVRKSYVKAGEIAEEVIGNVRTVQAFAGEDKAVKVYKEALSNTXXXXXXXX 282
A L +R + + A IAE+ + +R VQ+F GE++ ++ Y AL+
Sbjct: 275 AAALAKLSSRSQDALSDASGIAEQALAQIRIVQSFVGEERVMRAYSAALAVAQRIGYRSG 334
Query: 283 XXXXXXXXSMHCXXXXXXXXXXXXXXXXXHKHISNGGESFTTMLNVVIAGLSLGQAAPDI 342
+ + +NGG + TM +V+I GL+LGQ+AP +
Sbjct: 335 FAKGIGLGGTYFTVFCCYALLLWYGGHLVRRAHTNGGLAIATMFSVMIGGLALGQSAPSM 394
Query: 343 TAFIRAKAAAYPIFEMIE-RDTMSKASSKTGRKLDKLSGHIEFKDVSFCYPSRPDVAIFD 401
AF +A+ AA IF M+E + +M + G +L+ ++G +E +DV F YPSRPDV I
Sbjct: 395 AAFAKARVAAAKIFRMMEHKPSMEREG---GVELEAVTGRVELRDVEFSYPSRPDVGILR 451
Query: 402 KFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIG 461
L +PAGK +ALVG SGSGKSTV+SLIERFYEP +G ILLDG++++ L+L+WLR+QIG
Sbjct: 452 GLSLSVPAGKTIALVGSSGSGKSTVVSLIERFYEPNAGTILLDGHDLRDLNLRWLRRQIG 511
Query: 462 LVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQL 521
LV+QEPALFATTIREN+L G+D AT EE+ AA+++ A SFI LP+ + TQVGERG+QL
Sbjct: 512 LVSQEPALFATTIRENLLLGRDGATQEELEEAARVANAHSFIVKLPDAYNTQVGERGLQL 571
Query: 522 SGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLST 581
SGGQKQRIAI+RA+++NP+ILLLDEATSALD+ESE VQEALDR M+GRTT+V+AHRLST
Sbjct: 572 SGGQKQRIAIARAMLRNPAILLLDEATSALDSESEKLVQEALDRFMIGRTTLVIAHRLST 631
Query: 582 IRNADVIAVVQGRKIVKTGSHEELISNPNSAYAALVXXXXXXXXXXXXXXCPNMGRPLSI 641
IR AD++AV+QG I + G+H+EL++ + YA L+ + RP S
Sbjct: 632 IRKADLVAVLQGGAISEVGTHDELMARGDGTYARLIRMQEQAHEAALVAARRSSARPSSA 691
Query: 642 K--FSRELSGTRTSFGASFRSEKES----VLSHGAADATEPATAKHVSAI------KLYS 689
+ S + +S+G S S + S + G ++ +H + +L
Sbjct: 692 RNSVSSPIITRNSSYGRSPYSRRLSDADFITGLGLGVDSKQQQQQHYFRVQASSFWRLAK 751
Query: 690 MVRPDWTYGVCGTICAIIAGAQMPLFALGVSQALVAYYM-DWDTTQREVKKITILFCCAA 748
M P+W Y + ++ +++ G+ +FA +S L YY D R++ K L +
Sbjct: 752 MNSPEWGYALVASLGSMVCGSFSAIFAYVLSAVLSVYYAPDAAYMDRQIAKYCYLLIGMS 811
Query: 749 VITVIVHAIEHLSFGIMGERLTLRVREKMFSAILSNEIGWFDEMDNSSSILASRLESDAT 808
++ + ++HL + +GE LT RVRE+M +A+L NEI WFD DNSS+ +A+RL DA
Sbjct: 812 SAALLFNTVQHLFWDTVGENLTKRVRERMLAAVLRNEIAWFDMEDNSSARIAARLALDAQ 871
Query: 809 LLRTIVVDRSTILIQNFGLVTASFVIAFILNWRITLVVVATYPLIISGHISEKLFFQGYG 868
+R+ + DR +I++QN L+ + F+L WR+ LV++A +PL+++ + +K+F +G+
Sbjct: 872 NVRSAIGDRISIIVQNSALMLVACTAGFVLQWRLALVLLAVFPLVVAATVLQKMFLKGFS 931
Query: 869 GNLSKAYLKANMLAAEAVSNIRTVAAFCSEDKVLELYSRELVEPSKRSFIRGQIAGIFYG 928
G+L +A+ +A +A EAV+N+RTVAAF SE K++ L+ L P +R F +GQIAG YG
Sbjct: 932 GDLERAHARATQIAGEAVANVRTVAAFGSEAKIVGLFEANLAGPLRRCFWKGQIAGSGYG 991
Query: 929 ISQFFIFSSYGLALWYGSVLMGKELASFKSVMKSFMVLIVTALAMGETLALVPDLLKGNQ 988
++QF +++SY L LWY + L+ ++ F ++ FMVL+V+A ETL L PD +KG +
Sbjct: 992 VAQFLLYASYALGLWYAAWLVKHGVSDFSKTIRVFMVLMVSANGAAETLTLAPDFVKGGR 1051
Query: 989 MAASVFEVLDRKTQVIGDIGEELTNVE---GTIELRGVHFSYPSRPEVVIFKDFNLKVRA 1045
+VFE +DR+T++ D + E G +EL+ V F+YPSRPEV +F+D +L+ RA
Sbjct: 1052 AMQAVFEAMDRRTEIEPDDVDAAAVPERPRGEVELKHVDFAYPSRPEVQVFRDLSLRARA 1111
Query: 1046 GKSMALVGQSGSGKSTVLSLILRFYDPTAGK 1076
G+++ALVG SG GKS+VL+L+ RFY+P +G+
Sbjct: 1112 GRTLALVGASGCGKSSVLALVQRFYEPNSGR 1142
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| TAIR|locus:2041434 ABCB4 "ATP-binding cassette B4" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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Score = 1345 (478.5 bits), Expect = 1.5e-214, Sum P(2) = 1.5e-214
Identities = 269/577 (46%), Positives = 379/577 (65%)
Query: 41 VSLFKLFAFADFYDYILMSLGSIGACVHGVSVPVFFIFFGKLINIIGLAYLFPKTASHKV 100
V +KLFAFAD +D++LM LG++G+ +G+ P+ + FG LI+ G + KV
Sbjct: 46 VPFYKLFAFADSFDFLLMILGTLGSIGNGLGFPLMTLLFGDLIDAFGENQT---NTTDKV 102
Query: 101 AKYSLDFVYLSVAILFSSWIEVSCWMYTGERQAAKMRMAYLRSMLNQDISLFDTEASTGE 160
+K +L FV+L + ++++++S WM +GERQAA++R YL+++L QDI+ FD + +TGE
Sbjct: 103 SKVALKFVWLGIGTFAAAFLQLSGWMISGERQAARIRSLYLKTILRQDIAFFDIDTNTGE 162
Query: 161 VISAITSDIIVVQDALSEKVGNFMHYISRFLGGFIIGFARVWQISLVTLSIVPLIALAGG 220
V+ ++ D +++QDA+ EKVG + ++ F+GGF+I F R W ++LV LS +PL+ +AG
Sbjct: 163 VVGRMSGDTVLIQDAMGEKVGKAIQLLATFVGGFVIAFVRGWLLTLVMLSSIPLLVMAGA 222
Query: 221 MYAYVTIGLIARVRKSYVKAGEIAEEVIGNVRTVQAFAGEDKAVKVYKEALSNTXXXXXX 280
+ A V +R + +Y KA + E+ IG++RTV +F GE +A+ Y + L
Sbjct: 223 LLAIVIAKTASRGQTAYAKAATVVEQTIGSIRTVASFTGEKQAISNYNKHLVTAYKAGVI 282
Query: 281 XXXXXXXXXXSMHCXXXXXXXXXXXXXXXXXHKHISNGGESFTTMLNVVIAGLSLGQAAP 340
++ GG+ ++ V+ +SLGQ +P
Sbjct: 283 EGGSTGLGLGTLFLVVFCSYALAVWYGGKLILDKGYTGGQVLNIIIAVLTGSMSLGQTSP 342
Query: 341 DITAFIRAKAAAYPIFEMIERDTMSKASSKTGRKLDKLSGHIEFKDVSFCYPSRPDVAIF 400
++AF +AAAY +FE IER + S G+ LD + G IE KDV F YP+RPD IF
Sbjct: 343 CLSAFAAGQAAAYKMFETIERRPNIDSYSTNGKVLDDIKGDIELKDVYFTYPARPDEQIF 402
Query: 401 DKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQI 460
F L I +G VALVG SGSGKSTV+SLIERFY+P +G++L+DG N+K LKW+R +I
Sbjct: 403 RGFSLFISSGTTVALVGQSGSGKSTVVSLIERFYDPQAGDVLIDGINLKEFQLKWIRSKI 462
Query: 461 GLVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQ 520
GLV+QEP LF +I++NI YGK+DAT EEI AA+L+ A F+ LP+ +T VGE G Q
Sbjct: 463 GLVSQEPVLFTASIKDNIAYGKEDATTEEIKAAAELANASKFVDKLPQGLDTMVGEHGTQ 522
Query: 521 LSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLS 580
LSGGQKQRIA++RAI+K+P ILLLDEATSALDAESE VQEALDR+MV RTTVVVAHRLS
Sbjct: 523 LSGGQKQRIAVARAILKDPRILLLDEATSALDAESERVVQEALDRIMVNRTTVVVAHRLS 582
Query: 581 TIRNADVIAVVQGRKIVKTGSHEELISNPNSAYAALV 617
T+RNAD+IAV+ KIV+ GSH EL+ +P AY+ L+
Sbjct: 583 TVRNADMIAVIHQGKIVEKGSHTELLKDPEGAYSQLI 619
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9SGY1 | AB10B_ARATH | No assigned EC number | 0.7606 | 0.9600 | 0.8427 | no | no |
| P06795 | MDR1B_MOUSE | 3, ., 6, ., 3, ., 4, 4 | 0.3530 | 0.9563 | 0.8072 | yes | no |
| Q8LPK2 | AB2B_ARATH | No assigned EC number | 0.7923 | 0.9851 | 0.8334 | yes | no |
| P21439 | MDR3_HUMAN | 3, ., 6, ., 3, ., 4, 4 | 0.3622 | 0.9656 | 0.8087 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 3.6.3.44 | LOW CONFIDENCE prediction! |
| 3rd Layer | 2.7.1 | 0.691 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | fgenesh4_pg.C_LG_III000737 | multidrug/pheromone exporter, MDR family, ABC transporter family (1250 aa) | |||||||||
(Populus trichocarpa) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 1077 | |||
| cd03249 | 238 | cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassett | 1e-139 | |
| COG1132 | 567 | COG1132, MdlB, ABC-type multidrug transport system | 1e-121 | |
| TIGR00958 | 711 | TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) | 1e-120 | |
| TIGR02204 | 576 | TIGR02204, MsbA_rel, ABC transporter, permease/ATP | 1e-117 | |
| cd03251 | 234 | cd03251, ABCC_MsbA, ATP-binding cassette domain of | 1e-107 | |
| PTZ00265 | 1466 | PTZ00265, PTZ00265, multidrug resistance protein ( | 1e-103 | |
| TIGR02203 | 571 | TIGR02203, MsbA_lipidA, lipid A export permease/AT | 3e-96 | |
| cd03253 | 236 | cd03253, ABCC_ATM1_transporter, ATP-binding casset | 5e-95 | |
| COG2274 | 709 | COG2274, SunT, ABC-type bacteriocin/lantibiotic ex | 1e-93 | |
| cd03254 | 229 | cd03254, ABCC_Glucan_exporter_like, ATP-binding ca | 9e-93 | |
| PRK11176 | 582 | PRK11176, PRK11176, lipid transporter ATP-binding/ | 1e-89 | |
| PRK13657 | 588 | PRK13657, PRK13657, cyclic beta-1,2-glucan ABC tra | 1e-84 | |
| cd03252 | 237 | cd03252, ABCC_Hemolysin, ATP-binding cassette doma | 5e-80 | |
| cd03248 | 226 | cd03248, ABCC_TAP, ATP-binding cassette domain of | 6e-80 | |
| cd03228 | 171 | cd03228, ABCC_MRP_Like, ATP-binding cassette domai | 3e-77 | |
| TIGR01846 | 694 | TIGR01846, type_I_sec_HlyB, type I secretion syste | 3e-76 | |
| COG5265 | 497 | COG5265, ATM1, ABC-type transport system involved | 2e-71 | |
| cd03245 | 220 | cd03245, ABCC_bacteriocin_exporters, ATP-binding c | 4e-68 | |
| TIGR03375 | 694 | TIGR03375, type_I_sec_LssB, type I secretion syste | 4e-67 | |
| TIGR01192 | 585 | TIGR01192, chvA, glucan exporter ATP-binding prote | 2e-65 | |
| TIGR03796 | 710 | TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin syste | 2e-64 | |
| TIGR02857 | 529 | TIGR02857, CydD, thiol reductant ABC exporter, Cyd | 5e-63 | |
| COG4988 | 559 | COG4988, CydD, ABC-type transport system involved | 1e-62 | |
| COG4987 | 573 | COG4987, CydC, ABC-type transport system involved | 2e-59 | |
| TIGR03797 | 686 | TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin syste | 4e-59 | |
| cd03244 | 221 | cd03244, ABCC_MRP_domain2, ATP-binding cassette do | 4e-56 | |
| PRK10790 | 592 | PRK10790, PRK10790, putative multidrug transporter | 9e-56 | |
| PRK11160 | 574 | PRK11160, PRK11160, cysteine/glutathione ABC trans | 2e-54 | |
| PTZ00265 | 1466 | PTZ00265, PTZ00265, multidrug resistance protein ( | 1e-53 | |
| PRK11174 | 588 | PRK11174, PRK11174, cysteine/glutathione ABC trans | 5e-53 | |
| TIGR02868 | 530 | TIGR02868, CydC, thiol reductant ABC exporter, Cyd | 8e-52 | |
| PRK10789 | 569 | PRK10789, PRK10789, putative multidrug transporter | 1e-50 | |
| TIGR01193 | 708 | TIGR01193, bacteriocin_ABC, ABC-type bacteriocin t | 1e-47 | |
| COG1135 | 339 | COG1135, AbcC, ABC-type metal ion transport system | 4e-46 | |
| cd03260 | 227 | cd03260, ABC_PstB_phosphate_transporter, ATP-bindi | 8e-46 | |
| TIGR00958 | 711 | TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) | 3e-44 | |
| cd03259 | 213 | cd03259, ABC_Carb_Solutes_like, ATP-binding casset | 3e-44 | |
| cd03258 | 233 | cd03258, ABC_MetN_methionine_transporter, ATP-bind | 2e-43 | |
| COG1132 | 567 | COG1132, MdlB, ABC-type multidrug transport system | 3e-43 | |
| cd03225 | 211 | cd03225, ABC_cobalt_CbiO_domain1, First domain of | 3e-43 | |
| cd03247 | 178 | cd03247, ABCC_cytochrome_bd, ATP-binding cassette | 1e-42 | |
| COG3842 | 352 | COG3842, PotA, ABC-type spermidine/putrescine tran | 2e-42 | |
| cd03246 | 173 | cd03246, ABCC_Protease_Secretion, ATP-binding cass | 7e-42 | |
| cd03261 | 235 | cd03261, ABC_Org_Solvent_Resistant, ATP-binding ca | 1e-41 | |
| COG4618 | 580 | COG4618, ArpD, ABC-type protease/lipase transport | 3e-41 | |
| COG1125 | 309 | COG1125, OpuBA, ABC-type proline/glycine betaine t | 4e-41 | |
| cd03295 | 242 | cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cas | 4e-41 | |
| COG1122 | 235 | COG1122, CbiO, ABC-type cobalt transport system, A | 8e-41 | |
| cd03229 | 178 | cd03229, ABC_Class3, ATP-binding cassette domain o | 9e-41 | |
| COG1127 | 263 | COG1127, Ttg2A, ABC-type transport system involved | 1e-40 | |
| TIGR01842 | 544 | TIGR01842, type_I_sec_PrtD, type I secretion syste | 1e-40 | |
| COG1120 | 258 | COG1120, FepC, ABC-type cobalamin/Fe3+-siderophore | 4e-40 | |
| cd03250 | 204 | cd03250, ABCC_MRP_domain1, ATP-binding cassette do | 8e-40 | |
| TIGR00972 | 247 | TIGR00972, 3a0107s01c2, phosphate ABC transporter, | 4e-39 | |
| COG1126 | 240 | COG1126, GlnQ, ABC-type polar amino acid transport | 9e-39 | |
| cd03294 | 269 | cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette | 1e-38 | |
| cd03293 | 220 | cd03293, ABC_NrtD_SsuB_transporters, ATP-binding c | 2e-38 | |
| COG1131 | 293 | COG1131, CcmA, ABC-type multidrug transport system | 2e-38 | |
| COG1117 | 253 | COG1117, PstB, ABC-type phosphate transport system | 9e-38 | |
| pfam00664 | 274 | pfam00664, ABC_membrane, ABC transporter transmemb | 9e-38 | |
| cd03300 | 232 | cd03300, ABC_PotA_N, ATP-binding cassette domain o | 1e-37 | |
| COG1136 | 226 | COG1136, SalX, ABC-type antimicrobial peptide tran | 7e-37 | |
| cd03369 | 207 | cd03369, ABCC_NFT1, ATP-binding cassette domain 2 | 2e-36 | |
| cd03255 | 218 | cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding casse | 2e-36 | |
| PRK14250 | 241 | PRK14250, PRK14250, phosphate ABC transporter ATP- | 4e-36 | |
| cd03257 | 228 | cd03257, ABC_NikE_OppD_transporters, ATP-binding c | 5e-36 | |
| COG3839 | 338 | COG3839, MalK, ABC-type sugar transport systems, A | 7e-36 | |
| TIGR02204 | 576 | TIGR02204, MsbA_rel, ABC transporter, permease/ATP | 8e-36 | |
| TIGR01186 | 363 | TIGR01186, proV, glycine betaine/L-proline transpo | 1e-35 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 2e-35 | |
| COG4175 | 386 | COG4175, ProV, ABC-type proline/glycine betaine tr | 6e-35 | |
| cd03214 | 180 | cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-bind | 3e-34 | |
| PRK11153 | 343 | PRK11153, metN, DL-methionine transporter ATP-bind | 4e-34 | |
| cd00267 | 157 | cd00267, ABC_ATPase, ATP-binding cassette transpor | 4e-34 | |
| COG1118 | 345 | COG1118, CysA, ABC-type sulfate/molybdate transpor | 5e-34 | |
| PLN03232 | 1495 | PLN03232, PLN03232, ABC transporter C family membe | 5e-34 | |
| cd03256 | 241 | cd03256, ABC_PhnC_transporter, ATP-binding cassett | 1e-33 | |
| COG1124 | 252 | COG1124, DppF, ABC-type dipeptide/oligopeptide/nic | 2e-33 | |
| cd03262 | 213 | cd03262, ABC_HisP_GlnQ, ATP-binding cassette domai | 3e-33 | |
| PLN03130 | 1622 | PLN03130, PLN03130, ABC transporter C family membe | 3e-33 | |
| COG1116 | 248 | COG1116, TauB, ABC-type nitrate/sulfonate/bicarbon | 4e-33 | |
| cd03296 | 239 | cd03296, ABC_CysA_sulfate_importer, ATP-binding ca | 7e-33 | |
| COG4608 | 268 | COG4608, AppF, ABC-type oligopeptide transport sys | 8e-33 | |
| cd03299 | 235 | cd03299, ABC_ModC_like, ATP-binding cassette domai | 1e-32 | |
| TIGR00968 | 237 | TIGR00968, 3a0106s01, sulfate ABC transporter, ATP | 2e-32 | |
| TIGR01187 | 325 | TIGR01187, potA, spermidine/putrescine ABC transpo | 2e-32 | |
| PRK14240 | 250 | PRK14240, PRK14240, phosphate transporter ATP-bind | 8e-32 | |
| COG2884 | 223 | COG2884, FtsE, Predicted ATPase involved in cell d | 9e-32 | |
| cd03292 | 214 | cd03292, ABC_FtsE_transporter, ATP-binding cassett | 1e-31 | |
| PRK14236 | 272 | PRK14236, PRK14236, phosphate transporter ATP-bind | 3e-31 | |
| cd03230 | 173 | cd03230, ABC_DR_subfamily_A, ATP-binding cassette | 4e-31 | |
| pfam00664 | 274 | pfam00664, ABC_membrane, ABC transporter transmemb | 5e-31 | |
| COG3638 | 258 | COG3638, COG3638, ABC-type phosphate/phosphonate t | 5e-31 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 6e-31 | |
| PRK10744 | 260 | PRK10744, pstB, phosphate transporter ATP-binding | 8e-31 | |
| PRK14253 | 249 | PRK14253, PRK14253, phosphate ABC transporter ATP- | 1e-30 | |
| PRK14254 | 285 | PRK14254, PRK14254, phosphate ABC transporter ATP- | 2e-30 | |
| TIGR00957 | 1522 | TIGR00957, MRP_assoc_pro, multi drug resistance-as | 2e-30 | |
| PRK14235 | 267 | PRK14235, PRK14235, phosphate transporter ATP-bind | 4e-30 | |
| PRK09493 | 240 | PRK09493, glnQ, glutamine ABC transporter ATP-bind | 5e-30 | |
| cd03288 | 257 | cd03288, ABCC_SUR2, ATP-binding cassette domain 2 | 5e-30 | |
| PRK14262 | 250 | PRK14262, PRK14262, phosphate ABC transporter ATP- | 8e-30 | |
| PRK14270 | 251 | PRK14270, PRK14270, phosphate ABC transporter ATP- | 9e-30 | |
| COG3840 | 231 | COG3840, ThiQ, ABC-type thiamine transport system, | 9e-30 | |
| PRK13632 | 271 | PRK13632, cbiO, cobalt transporter ATP-binding sub | 1e-29 | |
| TIGR03608 | 206 | TIGR03608, L_ocin_972_ABC, putative bacteriocin ex | 2e-29 | |
| cd03301 | 213 | cd03301, ABC_MalK_N, The N-terminal ATPase domain | 2e-29 | |
| TIGR02203 | 571 | TIGR02203, MsbA_lipidA, lipid A export permease/AT | 3e-29 | |
| PRK14244 | 251 | PRK14244, PRK14244, phosphate ABC transporter ATP- | 3e-29 | |
| TIGR02314 | 343 | TIGR02314, ABC_MetN, D-methionine ABC transporter, | 4e-29 | |
| PRK11607 | 377 | PRK11607, potG, putrescine transporter ATP-binding | 1e-28 | |
| PRK14242 | 253 | PRK14242, PRK14242, phosphate transporter ATP-bind | 1e-28 | |
| PRK14245 | 250 | PRK14245, PRK14245, phosphate ABC transporter ATP- | 1e-28 | |
| TIGR01166 | 190 | TIGR01166, cbiO, cobalt transport protein ATP-bind | 2e-28 | |
| TIGR02315 | 243 | TIGR02315, ABC_phnC, phosphonate ABC transporter, | 2e-28 | |
| PRK13648 | 269 | PRK13648, cbiO, cobalt transporter ATP-binding sub | 3e-28 | |
| cd03249 | 238 | cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassett | 4e-28 | |
| PRK14241 | 258 | PRK14241, PRK14241, phosphate transporter ATP-bind | 4e-28 | |
| cd03235 | 213 | cd03235, ABC_Metallic_Cations, ATP-binding cassett | 5e-28 | |
| TIGR03265 | 353 | TIGR03265, PhnT2, putative 2-aminoethylphosphonate | 7e-28 | |
| PRK09452 | 375 | PRK09452, potA, putrescine/spermidine ABC transpor | 8e-28 | |
| TIGR02142 | 354 | TIGR02142, modC_ABC, molybdenum ABC transporter, A | 9e-28 | |
| TIGR02673 | 214 | TIGR02673, FtsE, cell division ATP-binding protein | 1e-27 | |
| COG0444 | 316 | COG0444, DppD, ABC-type dipeptide/oligopeptide/nic | 1e-27 | |
| cd03297 | 214 | cd03297, ABC_ModC_molybdenum_transporter, ATP-bind | 1e-27 | |
| COG1121 | 254 | COG1121, ZnuC, ABC-type Mn/Zn transport systems, A | 1e-27 | |
| PRK14264 | 305 | PRK14264, PRK14264, phosphate ABC transporter ATP- | 2e-27 | |
| PRK14269 | 246 | PRK14269, PRK14269, phosphate ABC transporter ATP- | 2e-27 | |
| pfam00005 | 119 | pfam00005, ABC_tran, ABC transporter | 3e-27 | |
| PRK14259 | 269 | PRK14259, PRK14259, phosphate ABC transporter ATP- | 4e-27 | |
| PRK14261 | 253 | PRK14261, PRK14261, phosphate ABC transporter ATP- | 4e-27 | |
| cd03219 | 236 | cd03219, ABC_Mj1267_LivG_branched, ATP-binding cas | 4e-27 | |
| PRK14247 | 250 | PRK14247, PRK14247, phosphate ABC transporter ATP- | 4e-27 | |
| PRK14266 | 250 | PRK14266, PRK14266, phosphate ABC transporter ATP- | 5e-27 | |
| COG4555 | 245 | COG4555, NatA, ABC-type Na+ transport system, ATPa | 7e-27 | |
| cd03213 | 194 | cd03213, ABCG_EPDR, Eye pigment and drug resistanc | 9e-27 | |
| PRK13650 | 279 | PRK13650, cbiO, cobalt transporter ATP-binding sub | 1e-26 | |
| cd03226 | 205 | cd03226, ABC_cobalt_CbiO_domain2, Second domain of | 1e-26 | |
| PRK14237 | 267 | PRK14237, PRK14237, phosphate transporter ATP-bind | 1e-26 | |
| PRK10070 | 400 | PRK10070, PRK10070, glycine betaine transporter AT | 2e-26 | |
| cd03224 | 222 | cd03224, ABC_TM1139_LivF_branched, ATP-binding cas | 5e-26 | |
| PRK14251 | 251 | PRK14251, PRK14251, phosphate ABC transporter ATP- | 5e-26 | |
| PLN03130 | 1622 | PLN03130, PLN03130, ABC transporter C family membe | 6e-26 | |
| PTZ00265 | 1466 | PTZ00265, PTZ00265, multidrug resistance protein ( | 7e-26 | |
| PRK13637 | 287 | PRK13637, cbiO, cobalt transporter ATP-binding sub | 7e-26 | |
| PRK13634 | 290 | PRK13634, cbiO, cobalt transporter ATP-binding sub | 7e-26 | |
| PRK14239 | 252 | PRK14239, PRK14239, phosphate transporter ATP-bind | 8e-26 | |
| PRK13649 | 280 | PRK13649, cbiO, cobalt transporter ATP-binding sub | 9e-26 | |
| TIGR01277 | 213 | TIGR01277, thiQ, thiamine ABC transporter, ATP-bin | 1e-25 | |
| PRK14249 | 251 | PRK14249, PRK14249, phosphate ABC transporter ATP- | 1e-25 | |
| PRK11264 | 250 | PRK11264, PRK11264, putative amino-acid ABC transp | 1e-25 | |
| TIGR00957 | 1522 | TIGR00957, MRP_assoc_pro, multi drug resistance-as | 2e-25 | |
| PRK13639 | 275 | PRK13639, cbiO, cobalt transporter ATP-binding sub | 2e-25 | |
| PRK14260 | 259 | PRK14260, PRK14260, phosphate ABC transporter ATP- | 2e-25 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 2e-25 | |
| PRK14274 | 259 | PRK14274, PRK14274, phosphate ABC transporter ATP- | 2e-25 | |
| PRK14246 | 257 | PRK14246, PRK14246, phosphate ABC transporter ATP- | 3e-25 | |
| PTZ00243 | 1560 | PTZ00243, PTZ00243, ABC transporter; Provisional | 3e-25 | |
| cd03263 | 220 | cd03263, ABC_subfamily_A, ATP-binding cassette dom | 4e-25 | |
| TIGR03258 | 362 | TIGR03258, PhnT, 2-aminoethylphosphonate ABC trans | 4e-25 | |
| COG4619 | 223 | COG4619, COG4619, ABC-type uncharacterized transpo | 6e-25 | |
| PRK14248 | 268 | PRK14248, PRK14248, phosphate ABC transporter ATP- | 7e-25 | |
| PRK14255 | 252 | PRK14255, PRK14255, phosphate ABC transporter ATP- | 8e-25 | |
| COG2274 | 709 | COG2274, SunT, ABC-type bacteriocin/lantibiotic ex | 1e-24 | |
| TIGR02982 | 220 | TIGR02982, heterocyst_DevA, ABC exporter ATP-bindi | 3e-24 | |
| COG4598 | 256 | COG4598, HisP, ABC-type histidine transport system | 3e-24 | |
| PRK14275 | 286 | PRK14275, PRK14275, phosphate ABC transporter ATP- | 3e-24 | |
| PRK13642 | 277 | PRK13642, cbiO, cobalt transporter ATP-binding sub | 5e-24 | |
| PRK10771 | 232 | PRK10771, thiQ, thiamine transporter ATP-binding s | 5e-24 | |
| COG4525 | 259 | COG4525, TauB, ABC-type taurine transport system, | 6e-24 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 6e-24 | |
| COG0411 | 250 | COG0411, LivG, ABC-type branched-chain amino acid | 7e-24 | |
| PRK14268 | 258 | PRK14268, PRK14268, phosphate ABC transporter ATP- | 7e-24 | |
| COG4604 | 252 | COG4604, CeuD, ABC-type enterochelin transport sys | 7e-24 | |
| cd03264 | 211 | cd03264, ABC_drug_resistance_like, ABC-type multid | 8e-24 | |
| PRK13647 | 274 | PRK13647, cbiO, cobalt transporter ATP-binding sub | 8e-24 | |
| TIGR02211 | 221 | TIGR02211, LolD_lipo_ex, lipoprotein releasing sys | 9e-24 | |
| PRK14243 | 264 | PRK14243, PRK14243, phosphate transporter ATP-bind | 1e-23 | |
| PRK14273 | 254 | PRK14273, PRK14273, phosphate ABC transporter ATP- | 1e-23 | |
| PRK13652 | 277 | PRK13652, cbiO, cobalt transporter ATP-binding sub | 1e-23 | |
| PLN03232 | 1495 | PLN03232, PLN03232, ABC transporter C family membe | 2e-23 | |
| PRK14238 | 271 | PRK14238, PRK14238, phosphate transporter ATP-bind | 2e-23 | |
| cd03290 | 218 | cd03290, ABCC_SUR1_N, ATP-binding cassette domain | 2e-23 | |
| cd03298 | 211 | cd03298, ABC_ThiQ_thiamine_transporter, ATP-bindin | 2e-23 | |
| PRK13635 | 279 | PRK13635, cbiO, cobalt transporter ATP-binding sub | 2e-23 | |
| PRK11831 | 269 | PRK11831, PRK11831, putative ABC transporter ATP-b | 2e-23 | |
| PRK14272 | 252 | PRK14272, PRK14272, phosphate ABC transporter ATP- | 2e-23 | |
| PRK10247 | 225 | PRK10247, PRK10247, putative ABC transporter ATP-b | 2e-23 | |
| PRK10851 | 353 | PRK10851, PRK10851, sulfate/thiosulfate transporte | 2e-23 | |
| PRK14271 | 276 | PRK14271, PRK14271, phosphate ABC transporter ATP- | 2e-23 | |
| TIGR03864 | 236 | TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-bindi | 3e-23 | |
| PRK13641 | 287 | PRK13641, cbiO, cobalt transporter ATP-binding sub | 3e-23 | |
| COG3845 | 501 | COG3845, COG3845, ABC-type uncharacterized transpo | 3e-23 | |
| PRK13646 | 286 | PRK13646, cbiO, cobalt transporter ATP-binding sub | 4e-23 | |
| PRK14256 | 252 | PRK14256, PRK14256, phosphate ABC transporter ATP- | 4e-23 | |
| PRK14265 | 274 | PRK14265, PRK14265, phosphate ABC transporter ATP- | 4e-23 | |
| COG4161 | 242 | COG4161, ArtP, ABC-type arginine transport system, | 6e-23 | |
| PRK11124 | 242 | PRK11124, artP, arginine transporter ATP-binding s | 9e-23 | |
| PRK11432 | 351 | PRK11432, fbpC, ferric transporter ATP-binding sub | 9e-23 | |
| PTZ00243 | 1560 | PTZ00243, PTZ00243, ABC transporter; Provisional | 1e-22 | |
| COG0410 | 237 | COG0410, LivF, ABC-type branched-chain amino acid | 1e-22 | |
| PRK11231 | 255 | PRK11231, fecE, iron-dicitrate transporter ATP-bin | 1e-22 | |
| PRK14258 | 261 | PRK14258, PRK14258, phosphate ABC transporter ATP- | 1e-22 | |
| TIGR03415 | 382 | TIGR03415, ABC_choXWV_ATP, choline ABC transporter | 1e-22 | |
| PRK14263 | 261 | PRK14263, PRK14263, phosphate ABC transporter ATP- | 1e-22 | |
| PRK11308 | 327 | PRK11308, dppF, dipeptide transporter ATP-binding | 1e-22 | |
| COG4148 | 352 | COG4148, ModC, ABC-type molybdate transport system | 2e-22 | |
| PRK10619 | 257 | PRK10619, PRK10619, histidine/lysine/arginine/orni | 3e-22 | |
| TIGR03873 | 256 | TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC tra | 4e-22 | |
| PRK13640 | 282 | PRK13640, cbiO, cobalt transporter ATP-binding sub | 5e-22 | |
| COG1119 | 257 | COG1119, ModF, ABC-type molybdenum transport syste | 6e-22 | |
| TIGR02770 | 230 | TIGR02770, nickel_nikD, nickel import ATP-binding | 1e-21 | |
| PRK14257 | 329 | PRK14257, PRK14257, phosphate ABC transporter ATP- | 1e-21 | |
| PRK13644 | 274 | PRK13644, cbiO, cobalt transporter ATP-binding sub | 2e-21 | |
| PRK14252 | 265 | PRK14252, PRK14252, phosphate ABC transporter ATP- | 4e-21 | |
| PRK14267 | 253 | PRK14267, PRK14267, phosphate ABC transporter ATP- | 7e-21 | |
| cd03291 | 282 | cd03291, ABCC_CFTR1, ATP-binding cassette domain o | 9e-21 | |
| PRK13645 | 289 | PRK13645, cbiO, cobalt transporter ATP-binding sub | 1e-20 | |
| COG4559 | 259 | COG4559, COG4559, ABC-type hemin transport system, | 1e-20 | |
| cd03228 | 171 | cd03228, ABCC_MRP_Like, ATP-binding cassette domai | 2e-20 | |
| COG1101 | 263 | COG1101, PhnK, ABC-type uncharacterized transport | 2e-20 | |
| PRK11248 | 255 | PRK11248, tauB, taurine transporter ATP-binding su | 2e-20 | |
| cd03268 | 208 | cd03268, ABC_BcrA_bacitracin_resist, ATP-binding c | 2e-20 | |
| TIGR03005 | 252 | TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine AB | 2e-20 | |
| COG4181 | 228 | COG4181, COG4181, Predicted ABC-type transport sys | 4e-20 | |
| PRK09536 | 402 | PRK09536, btuD, corrinoid ABC transporter ATPase; | 4e-20 | |
| PRK10535 | 648 | PRK10535, PRK10535, macrolide transporter ATP-bind | 6e-20 | |
| TIGR01271 | 1490 | TIGR01271, CFTR_protein, cystic fibrosis transmemb | 1e-19 | |
| cd03269 | 210 | cd03269, ABC_putative_ATPase, ATP-binding cassette | 1e-19 | |
| TIGR01184 | 230 | TIGR01184, ntrCD, nitrate transport ATP-binding su | 1e-19 | |
| COG1137 | 243 | COG1137, YhbG, ABC-type (unclassified) transport s | 1e-19 | |
| PRK10908 | 222 | PRK10908, PRK10908, cell division protein FtsE; Pr | 1e-19 | |
| cd03289 | 275 | cd03289, ABCC_CFTR2, ATP-binding cassette domain 2 | 2e-19 | |
| PRK13633 | 280 | PRK13633, PRK13633, cobalt transporter ATP-binding | 2e-19 | |
| PRK10575 | 265 | PRK10575, PRK10575, iron-hydroxamate transporter A | 2e-19 | |
| PRK13636 | 283 | PRK13636, cbiO, cobalt transporter ATP-binding sub | 3e-19 | |
| TIGR01271 | 1490 | TIGR01271, CFTR_protein, cystic fibrosis transmemb | 4e-19 | |
| PRK13631 | 320 | PRK13631, cbiO, cobalt transporter ATP-binding sub | 4e-19 | |
| PRK13536 | 340 | PRK13536, PRK13536, nodulation factor exporter sub | 4e-19 | |
| TIGR01188 | 302 | TIGR01188, drrA, daunorubicin resistance ABC trans | 4e-19 | |
| cd03218 | 232 | cd03218, ABC_YhbG, ATP-binding cassette component | 5e-19 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 7e-19 | |
| COG4167 | 267 | COG4167, SapF, ABC-type antimicrobial peptide tran | 8e-19 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 1e-18 | |
| TIGR02769 | 265 | TIGR02769, nickel_nikE, nickel import ATP-binding | 2e-18 | |
| cd03220 | 224 | cd03220, ABC_KpsT_Wzt, ATP-binding cassette compon | 2e-18 | |
| cd03216 | 163 | cd03216, ABC_Carb_Monos_I, First domain of the ATP | 2e-18 | |
| PRK11629 | 233 | PRK11629, lolD, lipoprotein transporter ATP-bindin | 3e-18 | |
| PRK13643 | 288 | PRK13643, cbiO, cobalt transporter ATP-binding sub | 6e-18 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 7e-18 | |
| COG4133 | 209 | COG4133, CcmA, ABC-type transport system involved | 8e-18 | |
| TIGR03410 | 230 | TIGR03410, urea_trans_UrtE, urea ABC transporter, | 1e-17 | |
| PRK13537 | 306 | PRK13537, PRK13537, nodulation ABC transporter Nod | 1e-17 | |
| PRK11144 | 352 | PRK11144, modC, molybdate transporter ATP-binding | 1e-17 | |
| cd03266 | 218 | cd03266, ABC_NatA_sodium_exporter, ATP-binding cas | 1e-17 | |
| PRK11650 | 356 | PRK11650, ugpC, glycerol-3-phosphate transporter A | 2e-17 | |
| COG0396 | 251 | COG0396, sufC, Cysteine desulfurase activator ATPa | 2e-17 | |
| PRK15439 | 510 | PRK15439, PRK15439, autoinducer 2 ABC transporter | 3e-17 | |
| PRK13548 | 258 | PRK13548, hmuV, hemin importer ATP-binding subunit | 3e-17 | |
| TIGR03269 | 520 | TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc | 3e-17 | |
| cd03251 | 234 | cd03251, ABCC_MsbA, ATP-binding cassette domain of | 4e-17 | |
| cd03253 | 236 | cd03253, ABCC_ATM1_transporter, ATP-binding casset | 4e-17 | |
| PRK11247 | 257 | PRK11247, ssuB, aliphatic sulfonates transport ATP | 4e-17 | |
| PRK11000 | 369 | PRK11000, PRK11000, maltose/maltodextrin transport | 4e-17 | |
| TIGR01288 | 303 | TIGR01288, nodI, ATP-binding ABC transporter famil | 5e-17 | |
| TIGR03740 | 223 | TIGR03740, galliderm_ABC, gallidermin-class lantib | 6e-17 | |
| COG1134 | 249 | COG1134, TagH, ABC-type polysaccharide/polyol phos | 6e-17 | |
| PRK11160 | 574 | PRK11160, PRK11160, cysteine/glutathione ABC trans | 1e-16 | |
| cd03265 | 220 | cd03265, ABC_DrrA, Daunorubicin/doxorubicin resist | 1e-16 | |
| PRK11176 | 582 | PRK11176, PRK11176, lipid transporter ATP-binding/ | 2e-16 | |
| COG4136 | 213 | COG4136, COG4136, ABC-type uncharacterized transpo | 2e-16 | |
| PRK11300 | 255 | PRK11300, livG, leucine/isoleucine/valine transpor | 2e-16 | |
| PRK10419 | 268 | PRK10419, nikE, nickel transporter ATP-binding pro | 2e-16 | |
| cd03234 | 226 | cd03234, ABCG_White, White pigment protein homolog | 3e-16 | |
| COG4615 | 546 | COG4615, PvdE, ABC-type siderophore export system, | 3e-16 | |
| PRK10418 | 254 | PRK10418, nikD, nickel transporter ATP-binding pro | 3e-16 | |
| PRK13638 | 271 | PRK13638, cbiO, cobalt transporter ATP-binding sub | 6e-16 | |
| PRK13651 | 305 | PRK13651, PRK13651, cobalt transporter ATP-binding | 9e-16 | |
| cd03248 | 226 | cd03248, ABCC_TAP, ATP-binding cassette domain of | 2e-15 | |
| COG4178 | 604 | COG4178, COG4178, ABC-type uncharacterized transpo | 2e-15 | |
| PRK13539 | 207 | PRK13539, PRK13539, cytochrome c biogenesis protei | 2e-15 | |
| TIGR00955 | 617 | TIGR00955, 3a01204, The Eye Pigment Precursor Tran | 2e-15 | |
| PRK15134 | 529 | PRK15134, PRK15134, microcin C ABC transporter ATP | 3e-15 | |
| COG4138 | 248 | COG4138, BtuD, ABC-type cobalamin transport system | 5e-15 | |
| PRK15134 | 529 | PRK15134, PRK15134, microcin C ABC transporter ATP | 6e-15 | |
| cd03217 | 200 | cd03217, ABC_FeS_Assembly, ABC-type transport syst | 6e-15 | |
| cd03223 | 166 | cd03223, ABCD_peroxisomal_ALDP, ATP-binding casset | 8e-15 | |
| PRK10253 | 265 | PRK10253, PRK10253, iron-enterobactin transporter | 9e-15 | |
| cd03254 | 229 | cd03254, ABCC_Glucan_exporter_like, ATP-binding ca | 2e-14 | |
| TIGR03796 | 710 | TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin syste | 2e-14 | |
| TIGR02857 | 529 | TIGR02857, CydD, thiol reductant ABC exporter, Cyd | 2e-14 | |
| PRK10261 | 623 | PRK10261, PRK10261, glutathione transporter ATP-bi | 2e-14 | |
| PRK15112 | 267 | PRK15112, PRK15112, antimicrobial peptide ABC syst | 2e-14 | |
| PRK11701 | 258 | PRK11701, phnK, phosphonate C-P lyase system prote | 2e-14 | |
| TIGR02324 | 224 | TIGR02324, CP_lyasePhnL, phosphonate C-P lyase sys | 2e-14 | |
| TIGR01189 | 198 | TIGR01189, ccmA, heme ABC exporter, ATP-binding pr | 2e-14 | |
| PRK03695 | 248 | PRK03695, PRK03695, vitamin B12-transporter ATPase | 2e-14 | |
| COG4107 | 258 | COG4107, PhnK, ABC-type phosphonate transport syst | 3e-14 | |
| PRK11288 | 501 | PRK11288, araG, L-arabinose transporter ATP-bindin | 3e-14 | |
| TIGR01257 | 2272 | TIGR01257, rim_protein, retinal-specific rim ABC t | 4e-14 | |
| TIGR02323 | 253 | TIGR02323, CP_lyasePhnK, phosphonate C-P lyase sys | 5e-14 | |
| cd03231 | 201 | cd03231, ABC_CcmA_heme_exporter, Cytochrome c biog | 7e-14 | |
| COG4987 | 573 | COG4987, CydC, ABC-type transport system involved | 1e-13 | |
| PRK09984 | 262 | PRK09984, PRK09984, phosphonate/organophosphate es | 1e-13 | |
| cd03267 | 236 | cd03267, ABC_NatA_like, ATP-binding cassette domai | 1e-13 | |
| COG3845 | 501 | COG3845, COG3845, ABC-type uncharacterized transpo | 3e-13 | |
| TIGR03269 | 520 | TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc | 3e-13 | |
| PRK15079 | 331 | PRK15079, PRK15079, oligopeptide ABC transporter A | 3e-13 | |
| PRK13540 | 200 | PRK13540, PRK13540, cytochrome c biogenesis protei | 3e-13 | |
| cd03245 | 220 | cd03245, ABCC_bacteriocin_exporters, ATP-binding c | 4e-13 | |
| PRK15056 | 272 | PRK15056, PRK15056, manganese/iron transporter ATP | 4e-13 | |
| PLN03211 | 659 | PLN03211, PLN03211, ABC transporter G-25; Provisio | 4e-13 | |
| PRK13549 | 506 | PRK13549, PRK13549, xylose transporter ATP-binding | 6e-13 | |
| TIGR01194 | 555 | TIGR01194, cyc_pep_trnsptr, cyclic peptide transpo | 6e-13 | |
| cd03261 | 235 | cd03261, ABC_Org_Solvent_Resistant, ATP-binding ca | 7e-13 | |
| PRK10522 | 547 | PRK10522, PRK10522, multidrug transporter membrane | 7e-13 | |
| cd03247 | 178 | cd03247, ABCC_cytochrome_bd, ATP-binding cassette | 9e-13 | |
| cd03215 | 182 | cd03215, ABC_Carb_Monos_II, Second domain of the A | 2e-12 | |
| COG4674 | 249 | COG4674, COG4674, Uncharacterized ABC-type transpo | 2e-12 | |
| TIGR02633 | 500 | TIGR02633, xylG, D-xylose ABC transporter, ATP-bin | 2e-12 | |
| PRK10584 | 228 | PRK10584, PRK10584, putative ABC transporter ATP-b | 2e-12 | |
| PRK10895 | 241 | PRK10895, PRK10895, lipopolysaccharide ABC transpo | 2e-12 | |
| TIGR03771 | 223 | TIGR03771, anch_rpt_ABC, anchored repeat-type ABC | 2e-12 | |
| TIGR02868 | 530 | TIGR02868, CydC, thiol reductant ABC exporter, Cyd | 3e-12 | |
| cd03232 | 192 | cd03232, ABCG_PDR_domain2, Second domain of the pl | 3e-12 | |
| TIGR03411 | 242 | TIGR03411, urea_trans_UrtD, urea ABC transporter, | 3e-12 | |
| COG4152 | 300 | COG4152, COG4152, ABC-type uncharacterized transpo | 3e-12 | |
| PRK11614 | 237 | PRK11614, livF, leucine/isoleucine/valine transpor | 6e-12 | |
| PRK09700 | 510 | PRK09700, PRK09700, D-allose transporter ATP-bindi | 9e-12 | |
| PRK13657 | 588 | PRK13657, PRK13657, cyclic beta-1,2-glucan ABC tra | 1e-11 | |
| cd03293 | 220 | cd03293, ABC_NrtD_SsuB_transporters, ATP-binding c | 1e-11 | |
| TIGR03719 | 552 | TIGR03719, ABC_ABC_ChvD, ATP-binding cassette prot | 1e-11 | |
| TIGR03522 | 301 | TIGR03522, GldA_ABC_ATP, gliding motility-associat | 1e-11 | |
| cd03271 | 261 | cd03271, ABC_UvrA_II, ATP-binding cassette domain | 2e-11 | |
| PRK11022 | 326 | PRK11022, dppD, dipeptide transporter ATP-binding | 3e-11 | |
| TIGR03375 | 694 | TIGR03375, type_I_sec_LssB, type I secretion syste | 4e-11 | |
| cd00267 | 157 | cd00267, ABC_ATPase, ATP-binding cassette transpor | 4e-11 | |
| TIGR01846 | 694 | TIGR01846, type_I_sec_HlyB, type I secretion syste | 5e-11 | |
| PRK10261 | 623 | PRK10261, PRK10261, glutathione transporter ATP-bi | 5e-11 | |
| COG2401 | 593 | COG2401, COG2401, ABC-type ATPase fused to a predi | 5e-11 | |
| COG4586 | 325 | COG4586, COG4586, ABC-type uncharacterized transpo | 5e-11 | |
| COG4778 | 235 | COG4778, PhnL, ABC-type phosphonate transport syst | 6e-11 | |
| COG4988 | 559 | COG4988, CydD, ABC-type transport system involved | 1e-10 | |
| COG1127 | 263 | COG1127, Ttg2A, ABC-type transport system involved | 1e-10 | |
| PRK11819 | 556 | PRK11819, PRK11819, putative ABC transporter ATP-b | 1e-10 | |
| TIGR01978 | 243 | TIGR01978, sufC, FeS assembly ATPase SufC | 1e-10 | |
| PRK10762 | 501 | PRK10762, PRK10762, D-ribose transporter ATP bindi | 2e-10 | |
| TIGR01192 | 585 | TIGR01192, chvA, glucan exporter ATP-binding prote | 3e-10 | |
| smart00382 | 148 | smart00382, AAA, ATPases associated with a variety | 3e-10 | |
| cd03225 | 211 | cd03225, ABC_cobalt_CbiO_domain1, First domain of | 4e-10 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 5e-10 | |
| CHL00131 | 252 | CHL00131, ycf16, sulfate ABC transporter protein; | 5e-10 | |
| cd03257 | 228 | cd03257, ABC_NikE_OppD_transporters, ATP-binding c | 6e-10 | |
| PRK10790 | 592 | PRK10790, PRK10790, putative multidrug transporter | 7e-10 | |
| PRK10938 | 490 | PRK10938, PRK10938, putative molybdenum transport | 7e-10 | |
| cd03295 | 242 | cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cas | 1e-09 | |
| PRK13538 | 204 | PRK13538, PRK13538, cytochrome c biogenesis protei | 1e-09 | |
| cd03221 | 144 | cd03221, ABCF_EF-3, ATP-binding cassette domain of | 1e-09 | |
| cd03229 | 178 | cd03229, ABC_Class3, ATP-binding cassette domain o | 2e-09 | |
| COG1136 | 226 | COG1136, SalX, ABC-type antimicrobial peptide tran | 2e-09 | |
| cd03255 | 218 | cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding casse | 2e-09 | |
| COG1116 | 248 | COG1116, TauB, ABC-type nitrate/sulfonate/bicarbon | 2e-09 | |
| cd03230 | 173 | cd03230, ABC_DR_subfamily_A, ATP-binding cassette | 3e-09 | |
| cd03237 | 246 | cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-bin | 4e-09 | |
| PRK10636 | 638 | PRK10636, PRK10636, putative ABC transporter ATP-b | 4e-09 | |
| PRK09544 | 251 | PRK09544, znuC, high-affinity zinc transporter ATP | 4e-09 | |
| PRK13547 | 272 | PRK13547, hmuV, hemin importer ATP-binding subunit | 5e-09 | |
| PLN03073 | 718 | PLN03073, PLN03073, ABC transporter F family; Prov | 5e-09 | |
| cd03246 | 173 | cd03246, ABCC_Protease_Secretion, ATP-binding cass | 7e-09 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 7e-09 | |
| cd03252 | 237 | cd03252, ABCC_Hemolysin, ATP-binding cassette doma | 8e-09 | |
| TIGR03719 | 552 | TIGR03719, ABC_ABC_ChvD, ATP-binding cassette prot | 8e-09 | |
| COG5265 | 497 | COG5265, ATM1, ABC-type transport system involved | 9e-09 | |
| COG3842 | 352 | COG3842, PotA, ABC-type spermidine/putrescine tran | 1e-08 | |
| COG1120 | 258 | COG1120, FepC, ABC-type cobalamin/Fe3+-siderophore | 1e-08 | |
| COG3839 | 338 | COG3839, MalK, ABC-type sugar transport systems, A | 1e-08 | |
| cd03214 | 180 | cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-bind | 1e-08 | |
| COG1124 | 252 | COG1124, DppF, ABC-type dipeptide/oligopeptide/nic | 1e-08 | |
| COG4608 | 268 | COG4608, AppF, ABC-type oligopeptide transport sys | 1e-08 | |
| TIGR00954 | 659 | TIGR00954, 3a01203, Peroxysomal Fatty Acyl CoA Tra | 1e-08 | |
| PRK10789 | 569 | PRK10789, PRK10789, putative multidrug transporter | 2e-08 | |
| cd03259 | 213 | cd03259, ABC_Carb_Solutes_like, ATP-binding casset | 2e-08 | |
| COG1245 | 591 | COG1245, COG1245, Predicted ATPase, RNase L inhibi | 2e-08 | |
| cd03244 | 221 | cd03244, ABCC_MRP_domain2, ATP-binding cassette do | 3e-08 | |
| PRK09580 | 248 | PRK09580, sufC, cysteine desulfurase ATPase compon | 3e-08 | |
| TIGR03797 | 686 | TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin syste | 4e-08 | |
| cd03221 | 144 | cd03221, ABCF_EF-3, ATP-binding cassette domain of | 4e-08 | |
| TIGR01193 | 708 | TIGR01193, bacteriocin_ABC, ABC-type bacteriocin t | 5e-08 | |
| COG1122 | 235 | COG1122, CbiO, ABC-type cobalt transport system, A | 5e-08 | |
| TIGR03608 | 206 | TIGR03608, L_ocin_972_ABC, putative bacteriocin ex | 7e-08 | |
| PRK09473 | 330 | PRK09473, oppD, oligopeptide transporter ATP-bindi | 8e-08 | |
| COG1125 | 309 | COG1125, OpuBA, ABC-type proline/glycine betaine t | 1e-07 | |
| cd03221 | 144 | cd03221, ABCF_EF-3, ATP-binding cassette domain of | 1e-07 | |
| cd03233 | 202 | cd03233, ABCG_PDR_domain1, First domain of the ple | 1e-07 | |
| TIGR00956 | 1394 | TIGR00956, 3a01205, Pleiotropic Drug Resistance (P | 1e-07 | |
| cd03220 | 224 | cd03220, ABC_KpsT_Wzt, ATP-binding cassette compon | 2e-07 | |
| PRK15439 | 510 | PRK15439, PRK15439, autoinducer 2 ABC transporter | 2e-07 | |
| COG1131 | 293 | COG1131, CcmA, ABC-type multidrug transport system | 3e-07 | |
| cd03256 | 241 | cd03256, ABC_PhnC_transporter, ATP-binding cassett | 3e-07 | |
| COG1134 | 249 | COG1134, TagH, ABC-type polysaccharide/polyol phos | 3e-07 | |
| cd03222 | 177 | cd03222, ABC_RNaseL_inhibitor, ATP-binding cassett | 3e-07 | |
| PLN03140 | 1470 | PLN03140, PLN03140, ABC transporter G family membe | 4e-07 | |
| cd03236 | 255 | cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-bin | 4e-07 | |
| COG3638 | 258 | COG3638, COG3638, ABC-type phosphate/phosphonate t | 5e-07 | |
| PRK09452 | 375 | PRK09452, potA, putrescine/spermidine ABC transpor | 5e-07 | |
| cd03301 | 213 | cd03301, ABC_MalK_N, The N-terminal ATPase domain | 6e-07 | |
| cd03216 | 163 | cd03216, ABC_Carb_Monos_I, First domain of the ATP | 6e-07 | |
| COG1245 | 591 | COG1245, COG1245, Predicted ATPase, RNase L inhibi | 6e-07 | |
| COG0178 | 935 | COG0178, UvrA, Excinuclease ATPase subunit [DNA re | 6e-07 | |
| PRK11147 | 635 | PRK11147, PRK11147, ABC transporter ATPase compone | 6e-07 | |
| COG0411 | 250 | COG0411, LivG, ABC-type branched-chain amino acid | 7e-07 | |
| COG1119 | 257 | COG1119, ModF, ABC-type molybdenum transport syste | 7e-07 | |
| PRK10982 | 491 | PRK10982, PRK10982, galactose/methyl galaxtoside t | 7e-07 | |
| cd03260 | 227 | cd03260, ABC_PstB_phosphate_transporter, ATP-bindi | 8e-07 | |
| COG4525 | 259 | COG4525, TauB, ABC-type taurine transport system, | 1e-06 | |
| PRK10535 | 648 | PRK10535, PRK10535, macrolide transporter ATP-bind | 1e-06 | |
| COG4170 | 330 | COG4170, SapD, ABC-type antimicrobial peptide tran | 1e-06 | |
| COG4618 | 580 | COG4618, ArpD, ABC-type protease/lipase transport | 2e-06 | |
| cd03250 | 204 | cd03250, ABCC_MRP_domain1, ATP-binding cassette do | 2e-06 | |
| COG2884 | 223 | COG2884, FtsE, Predicted ATPase involved in cell d | 2e-06 | |
| cd03292 | 214 | cd03292, ABC_FtsE_transporter, ATP-binding cassett | 2e-06 | |
| COG3840 | 231 | COG3840, ThiQ, ABC-type thiamine transport system, | 2e-06 | |
| TIGR02673 | 214 | TIGR02673, FtsE, cell division ATP-binding protein | 2e-06 | |
| TIGR03864 | 236 | TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-bindi | 2e-06 | |
| TIGR01257 | 2272 | TIGR01257, rim_protein, retinal-specific rim ABC t | 2e-06 | |
| PRK15064 | 530 | PRK15064, PRK15064, ABC transporter ATP-binding pr | 2e-06 | |
| PRK13546 | 264 | PRK13546, PRK13546, teichoic acids export protein | 2e-06 | |
| COG4181 | 228 | COG4181, COG4181, Predicted ABC-type transport sys | 3e-06 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 3e-06 | |
| COG4615 | 546 | COG4615, PvdE, ABC-type siderophore export system, | 3e-06 | |
| COG1135 | 339 | COG1135, AbcC, ABC-type metal ion transport system | 4e-06 | |
| COG1118 | 345 | COG1118, CysA, ABC-type sulfate/molybdate transpor | 4e-06 | |
| PRK11831 | 269 | PRK11831, PRK11831, putative ABC transporter ATP-b | 4e-06 | |
| PRK10636 | 638 | PRK10636, PRK10636, putative ABC transporter ATP-b | 4e-06 | |
| PRK13409 | 590 | PRK13409, PRK13409, putative ATPase RIL; Provision | 4e-06 | |
| cd03262 | 213 | cd03262, ABC_HisP_GlnQ, ATP-binding cassette domai | 5e-06 | |
| COG1121 | 254 | COG1121, ZnuC, ABC-type Mn/Zn transport systems, A | 5e-06 | |
| PRK11147 | 635 | PRK11147, PRK11147, ABC transporter ATPase compone | 5e-06 | |
| TIGR01842 | 544 | TIGR01842, type_I_sec_PrtD, type I secretion syste | 6e-06 | |
| cd03300 | 232 | cd03300, ABC_PotA_N, ATP-binding cassette domain o | 6e-06 | |
| COG0444 | 316 | COG0444, DppD, ABC-type dipeptide/oligopeptide/nic | 7e-06 | |
| COG3845 | 501 | COG3845, COG3845, ABC-type uncharacterized transpo | 8e-06 | |
| cd03219 | 236 | cd03219, ABC_Mj1267_LivG_branched, ATP-binding cas | 9e-06 | |
| COG1126 | 240 | COG1126, GlnQ, ABC-type polar amino acid transport | 1e-05 | |
| cd03294 | 269 | cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette | 1e-05 | |
| PRK14250 | 241 | PRK14250, PRK14250, phosphate ABC transporter ATP- | 1e-05 | |
| PRK13632 | 271 | PRK13632, cbiO, cobalt transporter ATP-binding sub | 1e-05 | |
| TIGR01166 | 190 | TIGR01166, cbiO, cobalt transport protein ATP-bind | 1e-05 | |
| cd03235 | 213 | cd03235, ABC_Metallic_Cations, ATP-binding cassett | 1e-05 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 1e-05 | |
| cd03263 | 220 | cd03263, ABC_subfamily_A, ATP-binding cassette dom | 1e-05 | |
| TIGR00630 | 925 | TIGR00630, uvra, excinuclease ABC, A subunit | 1e-05 | |
| PRK13543 | 214 | PRK13543, PRK13543, cytochrome c biogenesis protei | 1e-05 | |
| cd03369 | 207 | cd03369, ABCC_NFT1, ATP-binding cassette domain 2 | 2e-05 | |
| TIGR01277 | 213 | TIGR01277, thiQ, thiamine ABC transporter, ATP-bin | 2e-05 | |
| TIGR02211 | 221 | TIGR02211, LolD_lipo_ex, lipoprotein releasing sys | 2e-05 | |
| cd03298 | 211 | cd03298, ABC_ThiQ_thiamine_transporter, ATP-bindin | 2e-05 | |
| PRK11819 | 556 | PRK11819, PRK11819, putative ABC transporter ATP-b | 2e-05 | |
| PRK13409 | 590 | PRK13409, PRK13409, putative ATPase RIL; Provision | 2e-05 | |
| PRK15093 | 330 | PRK15093, PRK15093, antimicrobial peptide ABC tran | 2e-05 | |
| PRK11153 | 343 | PRK11153, metN, DL-methionine transporter ATP-bind | 3e-05 | |
| PRK13640 | 282 | PRK13640, cbiO, cobalt transporter ATP-binding sub | 3e-05 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 4e-05 | |
| COG4175 | 386 | COG4175, ProV, ABC-type proline/glycine betaine tr | 4e-05 | |
| PRK10771 | 232 | PRK10771, thiQ, thiamine transporter ATP-binding s | 4e-05 | |
| TIGR02324 | 224 | TIGR02324, CP_lyasePhnL, phosphonate C-P lyase sys | 4e-05 | |
| PRK10938 | 490 | PRK10938, PRK10938, putative molybdenum transport | 4e-05 | |
| COG0178 | 935 | COG0178, UvrA, Excinuclease ATPase subunit [DNA re | 5e-05 | |
| cd03238 | 176 | cd03238, ABC_UvrA, ATP-binding cassette domain of | 5e-05 | |
| cd03269 | 210 | cd03269, ABC_putative_ATPase, ATP-binding cassette | 6e-05 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 6e-05 | |
| PRK10575 | 265 | PRK10575, PRK10575, iron-hydroxamate transporter A | 7e-05 | |
| TIGR01184 | 230 | TIGR01184, ntrCD, nitrate transport ATP-binding su | 8e-05 | |
| PRK13541 | 195 | PRK13541, PRK13541, cytochrome c biogenesis protei | 8e-05 | |
| PRK11000 | 369 | PRK11000, PRK11000, maltose/maltodextrin transport | 9e-05 | |
| PRK10522 | 547 | PRK10522, PRK10522, multidrug transporter membrane | 9e-05 | |
| PLN03073 | 718 | PLN03073, PLN03073, ABC transporter F family; Prov | 9e-05 | |
| cd03226 | 205 | cd03226, ABC_cobalt_CbiO_domain2, Second domain of | 1e-04 | |
| PRK15064 | 530 | PRK15064, PRK15064, ABC transporter ATP-binding pr | 1e-04 | |
| PRK13545 | 549 | PRK13545, tagH, teichoic acids export protein ATP- | 1e-04 | |
| cd03258 | 233 | cd03258, ABC_MetN_methionine_transporter, ATP-bind | 2e-04 | |
| COG1117 | 253 | COG1117, PstB, ABC-type phosphate transport system | 2e-04 | |
| cd03296 | 239 | cd03296, ABC_CysA_sulfate_importer, ATP-binding ca | 2e-04 | |
| TIGR02315 | 243 | TIGR02315, ABC_phnC, phosphonate ABC transporter, | 2e-04 | |
| PRK13639 | 275 | PRK13639, cbiO, cobalt transporter ATP-binding sub | 2e-04 | |
| PRK13548 | 258 | PRK13548, hmuV, hemin importer ATP-binding subunit | 2e-04 | |
| TIGR02633 | 500 | TIGR02633, xylG, D-xylose ABC transporter, ATP-bin | 2e-04 | |
| COG4152 | 300 | COG4152, COG4152, ABC-type uncharacterized transpo | 2e-04 | |
| COG2401 | 593 | COG2401, COG2401, ABC-type ATPase fused to a predi | 2e-04 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 3e-04 | |
| TIGR00956 | 1394 | TIGR00956, 3a01205, Pleiotropic Drug Resistance (P | 3e-04 | |
| PRK00349 | 943 | PRK00349, uvrA, excinuclease ABC subunit A; Review | 3e-04 | |
| PRK13635 | 279 | PRK13635, cbiO, cobalt transporter ATP-binding sub | 4e-04 | |
| PRK11247 | 257 | PRK11247, ssuB, aliphatic sulfonates transport ATP | 4e-04 | |
| PRK11248 | 255 | PRK11248, tauB, taurine transporter ATP-binding su | 6e-04 | |
| PRK13536 | 340 | PRK13536, PRK13536, nodulation factor exporter sub | 6e-04 | |
| PRK11147 | 635 | PRK11147, PRK11147, ABC transporter ATPase compone | 6e-04 | |
| PRK10982 | 491 | PRK10982, PRK10982, galactose/methyl galaxtoside t | 6e-04 | |
| cd03291 | 282 | cd03291, ABCC_CFTR1, ATP-binding cassette domain o | 7e-04 | |
| cd03234 | 226 | cd03234, ABCG_White, White pigment protein homolog | 7e-04 | |
| PRK11650 | 356 | PRK11650, ugpC, glycerol-3-phosphate transporter A | 8e-04 | |
| TIGR01194 | 555 | TIGR01194, cyc_pep_trnsptr, cyclic peptide transpo | 8e-04 | |
| PRK11174 | 588 | PRK11174, PRK11174, cysteine/glutathione ABC trans | 9e-04 | |
| COG4604 | 252 | COG4604, CeuD, ABC-type enterochelin transport sys | 9e-04 | |
| TIGR00968 | 237 | TIGR00968, 3a0106s01, sulfate ABC transporter, ATP | 0.001 | |
| PRK13650 | 279 | PRK13650, cbiO, cobalt transporter ATP-binding sub | 0.001 | |
| cd03224 | 222 | cd03224, ABC_TM1139_LivF_branched, ATP-binding cas | 0.001 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 0.001 | |
| PRK14257 | 329 | PRK14257, PRK14257, phosphate ABC transporter ATP- | 0.001 | |
| TIGR01288 | 303 | TIGR01288, nodI, ATP-binding ABC transporter famil | 0.001 | |
| PRK11701 | 258 | PRK11701, phnK, phosphonate C-P lyase system prote | 0.001 | |
| PRK10938 | 490 | PRK10938, PRK10938, putative molybdenum transport | 0.001 | |
| TIGR00630 | 925 | TIGR00630, uvra, excinuclease ABC, A subunit | 0.001 | |
| cd03299 | 235 | cd03299, ABC_ModC_like, ATP-binding cassette domai | 0.002 | |
| PRK09493 | 240 | PRK09493, glnQ, glutamine ABC transporter ATP-bind | 0.002 | |
| PRK11607 | 377 | PRK11607, potG, putrescine transporter ATP-binding | 0.002 | |
| TIGR03258 | 362 | TIGR03258, PhnT, 2-aminoethylphosphonate ABC trans | 0.002 | |
| PRK10247 | 225 | PRK10247, PRK10247, putative ABC transporter ATP-b | 0.002 | |
| cd03268 | 208 | cd03268, ABC_BcrA_bacitracin_resist, ATP-binding c | 0.002 | |
| PRK11629 | 233 | PRK11629, lolD, lipoprotein transporter ATP-bindin | 0.002 | |
| PRK09700 | 510 | PRK09700, PRK09700, D-allose transporter ATP-bindi | 0.002 | |
| PRK10762 | 501 | PRK10762, PRK10762, D-ribose transporter ATP bindi | 0.002 | |
| PLN03073 | 718 | PLN03073, PLN03073, ABC transporter F family; Prov | 0.002 | |
| PRK15064 | 530 | PRK15064, PRK15064, ABC transporter ATP-binding pr | 0.002 | |
| cd03227 | 162 | cd03227, ABC_Class2, ATP-binding cassette domain o | 0.002 | |
| cd03270 | 226 | cd03270, ABC_UvrA_I, ATP-binding cassette domain I | 0.002 | |
| TIGR00972 | 247 | TIGR00972, 3a0107s01c2, phosphate ABC transporter, | 0.003 | |
| TIGR01186 | 363 | TIGR01186, proV, glycine betaine/L-proline transpo | 0.003 | |
| COG4555 | 245 | COG4555, NatA, ABC-type Na+ transport system, ATPa | 0.003 | |
| COG4619 | 223 | COG4619, COG4619, ABC-type uncharacterized transpo | 0.003 | |
| COG0396 | 251 | COG0396, sufC, Cysteine desulfurase activator ATPa | 0.003 | |
| COG4598 | 256 | COG4598, HisP, ABC-type histidine transport system | 0.004 | |
| PRK10419 | 268 | PRK10419, nikE, nickel transporter ATP-binding pro | 0.004 | |
| PRK13539 | 207 | PRK13539, PRK13539, cytochrome c biogenesis protei | 0.004 | |
| PRK15134 | 529 | PRK15134, PRK15134, microcin C ABC transporter ATP | 0.004 |
| >gnl|CDD|213216 cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins | Back alignment and domain information |
|---|
Score = 418 bits (1076), Expect = e-139
Identities = 159/239 (66%), Positives = 190/239 (79%), Gaps = 1/239 (0%)
Query: 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEI 441
IEFK+VSF YPSRPDV I L IP GK VALVG SG GKSTV+SL+ERFY+P SGEI
Sbjct: 1 IEFKNVSFRYPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEI 60
Query: 442 LLDGNNIKGLDLKWLRQQIGLVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMS 501
LLDG +I+ L+L+WLR QIGLV+QEP LF TI ENI YGK DAT EE+ AAK +
Sbjct: 61 LLDGVDIRDLNLRWLRSQIGLVSQEPVLFDGTIAENIRYGKPDATDEEVEEAAKKANIHD 120
Query: 502 FISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQE 561
FI +LP+ ++T VGERG QLSGGQKQRIAI+RA+++NP ILLLDEATSALDAESE VQE
Sbjct: 121 FIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNPKILLLDEATSALDAESEKLVQE 180
Query: 562 ALDRVMVGRTTVVVAHRLSTIRNADVIAVVQGRKIVKTGSHEELISNPNSAYAALVQLQ 620
ALDR M GRTT+V+AHRLSTIRNAD+IAV+Q ++V+ G+H+EL++ YA LV+ Q
Sbjct: 181 ALDRAMKGRTTIVIAHRLSTIRNADLIAVLQNGQVVEQGTHDELMAQKG-VYAKLVKAQ 238
|
MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. Length = 238 |
| >gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 384 bits (987), Expect = e-121
Identities = 199/583 (34%), Positives = 323/583 (55%), Gaps = 17/583 (2%)
Query: 41 VSLFKLFAFADFYDYILMSLGSIGACVHGVSVPVFFIFFGKLINIIGLAYLFPKTASHKV 100
L +L + + +L L + + + + +P + G++I+ + ++
Sbjct: 2 SLLRRLLKYLKYKLLLLAILLLLLSALLSLLLP---LLIGRIIDALLAD-------LGEL 51
Query: 101 AKYSLDFVYLSVAILFSSWIEVSCWMYTGERQAAKMRMAYLRSMLNQDISLFDTEASTGE 160
+ L + L++ ++ G++ A +R +L +S FD A +G+
Sbjct: 52 LELLLLLLLLALLGGVLRALQSYLGSRLGQKIVADLRRDLFEKLLRLPLSFFDK-AKSGD 110
Query: 161 VISAITSDIIVVQDALSEKVGNFMHYISRFLGGFIIGFARVWQISLVTLSIVPLIALAGG 220
+IS +T+D+ V + +S + I +G ++ F+ W+++L+ L I+PL+AL
Sbjct: 111 LISRLTNDVEAVSNLVSTVLVLVFTSILLLIGSLVLLFSLSWRLALILLLILPLLALVLS 170
Query: 221 MYAYVTIGLIARVRKSYVKAGEIAEEVIGNVRTVQAFAGEDKAVKVYKEALSNTYKYGRK 280
+ A + L RVR++ + E + +R ++AF ED+ +K ++EA + +
Sbjct: 171 LLARKSRKLSRRVREALGELNARLLESLSGIRVIKAFGAEDRELKRFEEANEELRRANLR 230
Query: 281 AGLAKGLGLGSMHCVLFLSWSLLVWYVSVVVHKHISNGGESFTTMLNVVIAGLSLGQAAP 340
A + L M + L L++ +V G +L ++ + Q
Sbjct: 231 ASRLEALLAPLMLLLSSLGTVLVLALGGFLVLSGSLTVGALAAFILYLLRLLTPILQLGE 290
Query: 341 DITAFIRAKAAAYPIFEMIERDTMSKASSKTGRKLDKLSGHIEFKDVSFCYPSRPDVAIF 400
++ RA AAA +FE++ D + L G IEF++VSF YP + V
Sbjct: 291 VVSLLQRASAAAERLFELL--DEEPEVEDPPD-PLKDTIGSIEFENVSFSYPGKKPV--L 345
Query: 401 DKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQI 460
I G+ VA+VG SGSGKST+I L+ R Y+P SGEIL+DG +I+ + L LR++I
Sbjct: 346 KDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDSLRKRI 405
Query: 461 GLVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQ 520
G+V+Q+P LF+ TIRENI G+ DAT EEI A KL+ A FI+NLP+ ++T VGERG+
Sbjct: 406 GIVSQDPLLFSGTIRENIALGRPDATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVN 465
Query: 521 LSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLS 580
LSGGQ+QR+AI+RA+++NP IL+LDEATSALD E+E +Q+AL +++ GRTT+++AHRLS
Sbjct: 466 LSGGQRQRLAIARALLRNPPILILDEATSALDTETEALIQDALKKLLKGRTTLIIAHRLS 525
Query: 581 TIRNADVIAVVQGRKIVKTGSHEELISNPNSAYAALVQLQEAA 623
TI+NAD I V+ +IV+ G+HEEL++ YA L Q Q A
Sbjct: 526 TIKNADRIIVLDNGRIVERGTHEELLAK-GGLYARLYQAQGGA 567
|
Length = 567 |
| >gnl|CDD|233209 TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Score = 384 bits (989), Expect = e-120
Identities = 203/594 (34%), Positives = 328/594 (55%), Gaps = 26/594 (4%)
Query: 31 SSKKQQQKRSVSLFKLFAFA--DFYDYILMSLGSIGACVHGVSVPVFFIFFGKLINIIGL 88
+++ Q + + LF+L + D+ I + + + + +P F+ G++I+ +G
Sbjct: 137 EAEQGQSETADLLFRLLGLSGRDWPWLISAFVFLTLSSLGEMFIP-FYT--GRVIDTLGG 193
Query: 89 AYLFPKTASHKVAKYSLDFVYLSVAILFSSWIEVSCWMYTGERQAAKMRMAYLRSMLNQD 148
P AS A + + LS+A S+ + + YT R ++R RS+L QD
Sbjct: 194 DKGPPALAS---AIFFMCL--LSIASSVSAGLRGGSFNYTMARINLRIREDLFRSLLRQD 248
Query: 149 ISLFDTEASTGEVISAITSDIIVVQDALSEKVGNFMHYISRFLGGFIIGFARVWQISLVT 208
+ FD E TGE+ S ++SD + +LS V + + LG ++++VT
Sbjct: 249 LGFFD-ENKTGELTSRLSSDTQTMSRSLSLNVNVLLRNLVMLLGLLGFMLWLSPRLTMVT 307
Query: 209 LSIVPLIALAGGMYAYVTIGLIARVRKSYVKAGEIAEEVIGNVRTVQAFAGEDKAVKVYK 268
L +PL+ LA ++ L ++++ KA ++AEE + +RTV++FA E+ +K
Sbjct: 308 LINLPLVFLAEKVFGKRYQLLSEELQEAVAKANQVAEEALSGMRTVRSFAAEEGEASRFK 367
Query: 269 EALSNTYKYGRKAGLAKGLGLGSMHCVLFLSWSLLVWY-VSVVVHKHISNGGESFTTMLN 327
EAL T + ++ LA L + + L L+++Y +V+ +S+G +++
Sbjct: 368 EALEETLQLNKRKALAYAGYLWTTSVLGMLIQVLVLYYGGQLVLTGKVSSGN-----LVS 422
Query: 328 VVIAGLSLGQAAPDITAF----IRAKAAAYPIFEMIERDTMSKASSKTGRKLDKLSGHIE 383
++ LG+A ++ ++A A+ +FE ++R + L G IE
Sbjct: 423 FLLYQEQLGEAVRVLSYVYSGMMQAVGASEKVFEYLDRKPNIPLTG--TLAPLNLEGLIE 480
Query: 384 FKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILL 443
F+DVSF YP+RPDV + + G++VALVG SGSGKSTV +L++ Y+P G++LL
Sbjct: 481 FQDVSFSYPNRPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLL 540
Query: 444 DGNNIKGLDLKWLRQQIGLVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMSFI 503
DG + D +L +Q+ LV QEP LF+ ++RENI YG D EEI AAK + A FI
Sbjct: 541 DGVPLVQYDHHYLHRQVALVGQEPVLFSGSVRENIAYGLTDTPDEEIMAAAKAANAHDFI 600
Query: 504 SNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEAL 563
P ++T+VGE+G QLSGGQKQRIAI+RA+V+ P +L+LDEATSALDAE E +QE
Sbjct: 601 MEFPNGYDTEVGEKGSQLSGGQKQRIAIARALVRKPRVLILDEATSALDAECEQLLQE-- 658
Query: 564 DRVMVGRTTVVVAHRLSTIRNADVIAVVQGRKIVKTGSHEELISNPNSAYAALV 617
R RT +++AHRLST+ AD I V++ +V+ G+H++L+ + Y LV
Sbjct: 659 SRSRASRTVLLIAHRLSTVERADQILVLKKGSVVEMGTHKQLMEDQG-CYKHLV 711
|
[Transport and binding proteins, Other]. Length = 711 |
| >gnl|CDD|131259 TIGR02204, MsbA_rel, ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Score = 372 bits (958), Expect = e-117
Identities = 198/537 (36%), Positives = 297/537 (55%), Gaps = 18/537 (3%)
Query: 92 FPKTASHKVAKYSLDFVYLSVAILFSSWIEVSCWMYTGERQAAKMRMAYLRSMLNQDISL 151
F K +S + +Y + +++ + + + GER A +R A +++ S
Sbjct: 49 FSKDSSGLLNRYFAFLLVVALVLALGTAARFYLVTWLGERVVADIRRAVFAHLISLSPSF 108
Query: 152 FDTEASTGEVISAITSDIIVVQDALSEKVGNFMHYISRFLGGFIIGFARVWQISLVTLSI 211
FD +GEV+S +T+D ++Q + + + +GG I+ F +++ + L
Sbjct: 109 FDK-NRSGEVVSRLTTDTTLLQSVIGSSLSMALRNALMCIGGLIMMFITSPKLTSLVLLA 167
Query: 212 VPLIALAGGMYAYVTIGLIARVRK-------SYVKAGEIAEEVIGNVRTVQAFAGEDKAV 264
VPL+ L ++ RVRK AG A E +G +RTVQAF ED
Sbjct: 168 VPLVLLPILLFG-------RRVRKLSRESQDRIADAGSYAGETLGAIRTVQAFGHEDAER 220
Query: 265 KVYKEALSNTYKYGRKAGLAKGLGLGSMHCVLFLSWSLLVWY-VSVVVHKHISNGGESFT 323
+ A+ Y+ R+ + L + ++F + ++W V+ +S G
Sbjct: 221 SRFGGAVEKAYEAARQRIRTRALLTAIVIVLVFGAIVGVLWVGAHDVIAGKMS-AGTLGQ 279
Query: 324 TMLNVVIAGLSLGQAAPDITAFIRAKAAAYPIFEMIERDTMSKASSKTGRKLDKLSGHIE 383
+ V+ S+G + RA AA + E+++ + KA + L G IE
Sbjct: 280 FVFYAVMVAGSIGTLSEVWGELQRAAGAAERLIELLQAEPDIKAPAHPKTLPVPLRGEIE 339
Query: 384 FKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILL 443
F+ V+F YP+RPD D L + G+ VALVG SG+GKST+ L+ RFY+P SG ILL
Sbjct: 340 FEQVNFAYPARPDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILL 399
Query: 444 DGNNIKGLDLKWLRQQIGLVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMSFI 503
DG +++ LD LR ++ LV Q+P LFA ++ ENI YG+ DAT EE+ AA+ + A FI
Sbjct: 400 DGVDLRQLDPAELRARMALVPQDPVLFAASVMENIRYGRPDATDEEVEAAARAAHAHEFI 459
Query: 504 SNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEAL 563
S LPE ++T +GERG+ LSGGQ+QRIAI+RAI+K+ ILLLDEATSALDAESE VQ+AL
Sbjct: 460 SALPEGYDTYLGERGVTLSGGQRQRIAIARAILKDAPILLLDEATSALDAESEQLVQQAL 519
Query: 564 DRVMVGRTTVVVAHRLSTIRNADVIAVVQGRKIVKTGSHEELISNPNSAYAALVQLQ 620
+ +M GRTT+++AHRL+T+ AD I V+ +IV G+H ELI+ YA L +LQ
Sbjct: 520 ETLMKGRTTLIIAHRLATVLKADRIVVMDQGRIVAQGTHAELIAK-GGLYARLARLQ 575
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. Length = 576 |
| >gnl|CDD|213218 cd03251, ABCC_MsbA, ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 334 bits (858), Expect = e-107
Identities = 131/235 (55%), Positives = 173/235 (73%), Gaps = 2/235 (0%)
Query: 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEI 441
+EFK+V+F YP + LDIPAG+ VALVG SGSGKST+++LI RFY+ SG I
Sbjct: 1 VEFKNVTFRYPGDGP-PVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRI 59
Query: 442 LLDGNNIKGLDLKWLRQQIGLVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMS 501
L+DG++++ L LR+QIGLV+Q+ LF T+ ENI YG+ AT EE+ AA+ + A
Sbjct: 60 LIDGHDVRDYTLASLRRQIGLVSQDVFLFNDTVAENIAYGRPGATREEVEEAARAANAHE 119
Query: 502 FISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQE 561
FI LPE ++T +GERG++LSGGQ+QRIAI+RA++K+P IL+LDEATSALD ESE VQ
Sbjct: 120 FIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPILILDEATSALDTESERLVQA 179
Query: 562 ALDRVMVGRTTVVVAHRLSTIRNADVIAVVQGRKIVKTGSHEELISNPNSAYAAL 616
AL+R+M RTT V+AHRLSTI NAD I V++ KIV+ G+HEEL++ YA L
Sbjct: 180 ALERLMKNRTTFVIAHRLSTIENADRIVVLEDGKIVERGTHEELLAQ-GGVYAKL 233
|
MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 234 |
| >gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Score = 355 bits (911), Expect = e-103
Identities = 306/1234 (24%), Positives = 535/1234 (43%), Gaps = 199/1234 (16%)
Query: 13 DYNNSSNNNNNNNTEDQESSKK-------QQQKRSVSLFKLFAFADFYDYILMSLGSIGA 65
D N+ N + + ++E +KK + + + + F F L+ + + A
Sbjct: 10 DNNSGGGNLSIKDEVEKELNKKGTFELYKKIKTQKIPFFLPFKCLPASHRKLLGVSFVCA 69
Query: 66 CVHGVSVPVFFIFFGKLINIIGLAYLFPKTASHKVAKYSLDFVYLSVAILFSSWIEVSCW 125
+ G ++P F FG ++ + L V V + + S+I C
Sbjct: 70 TISGGTLPFFVSVFGVIMKNMNLG--------ENVNDIIFSLVLIGIFQFILSFISSFCM 121
Query: 126 MYTGERQAAKMRMAYLRSMLNQDISLFDTEASTGEVISAITSDIIVVQDALSEKVGN--- 182
+ +++ +L+S+ QD D S +TSD+ + ++ +G
Sbjct: 122 DVVTTKILKTLKLEFLKSVFYQDGQFHDNNPG-----SKLTSDLDFYLEQVNAGIGTKFI 176
Query: 183 -FMHYISRFLGGFIIGFARVWQISLVTLSIVPLIALAGGMYAYVTIGLIARVRKSYV--- 238
Y S FLG +I + +++L + PLI + G V ++ K
Sbjct: 177 TIFTYASAFLGLYIWSLFKNARLTLCITCVFPLIYICG-----VICNKKVKINKKTSLLY 231
Query: 239 --KAGEIAEEVIGNVRTVQAFAGEDKAVKVYKEALSNTYKYGRKAGLAKGLGLGSMHCVL 296
I EE + +RTV ++ GE +K + + KY KA + L +G ++ +
Sbjct: 232 NNNTMSIIEEALVGIRTVVSYCGEKTILKKFNLSEKLYSKYILKANFMESLHIGMINGFI 291
Query: 297 FLSWSLLVWYVSVVVHKHISN--------GGESFTTMLNVVIAGLSLGQAAPDITAFIRA 348
S++ WY + ++ +SN GG + +L V+I+ L P+IT ++++
Sbjct: 292 LASYAFGFWYGTRIIISDLSNQQPNNDFHGGSVISILLGVLISMFMLTIILPNITEYMKS 351
Query: 349 KAAAYPIFEMIERDTMSKASSKTGRKLDKLSGHIEFKDVSFCYPSRPDVAIFDKFCLDIP 408
A ++E+I R + + ++ G+KL + I+FK+V F Y +R DV I+ +
Sbjct: 352 LEATNSLYEIINRKPLVE-NNDDGKKLKDIK-KIQFKNVRFHYDTRKDVEIYKDLNFTLT 409
Query: 409 AGKIVALVGGSGSGKSTVISLIERFYEPLSGEILL-DGNNIKGLDLKWLRQQIGLVNQEP 467
GK A VG SG GKST++ LIER Y+P G+I++ D +N+K ++LKW R +IG+V+Q+P
Sbjct: 410 EGKTYAFVGESGCGKSTILKLIERLYDPTEGDIIINDSHNLKDINLKWWRSKIGVVSQDP 469
Query: 468 ALFATTIRENILYG----KDDATMEE----------------ITRAAKLSEAMSFISN-- 505
LF+ +I+ NI Y KD + + AK + ++ +SN
Sbjct: 470 LLFSNSIKNNIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSNTT 529
Query: 506 -----------------------------------LPERFETQVGERGIQLSGGQKQRIA 530
LP+++ET VG +LSGGQKQRI+
Sbjct: 530 DSNELIEMRKNYQTIKDSEVVDVSKKVLIHDFVSALPDKYETLVGSNASKLSGGQKQRIS 589
Query: 531 ISRAIVKNPSILLLDEATSALDAESENSVQEALDRVM--VGRTTVVVAHRLSTIRNADVI 588
I+RAI++NP IL+LDEATS+LD +SE VQ+ ++ + R T+++AHRLSTIR A+ I
Sbjct: 590 IARAIIRNPKILILDEATSSLDNKSEYLVQKTINNLKGNENRITIIIAHRLSTIRYANTI 649
Query: 589 AVVQGRK-----------------------------------------------IVKTGS 601
V+ R+ I++ G+
Sbjct: 650 FVLSNRERGSTVDVDIIGEDPTKDNKENNNKNNKDDNNNNNNNNNNKINNAGSYIIEQGT 709
Query: 602 HEELISNPNSAYAALVQLQEAASQQSNSSQCPNMGRPLSIKF--------SRELSGTRTS 653
H+ L+ N N Y ++ Q+ +S++S+++ S + E++G
Sbjct: 710 HDALMKNKNGIYYTMINNQKVSSKKSSNNDNDKDSDMKSSAYKDSERGYDPDEMNGNSKH 769
Query: 654 FGASFRSEKESVLSHGAADATEPATA----------KHVSAIKLYSMVRPDWTYGVCGTI 703
S ++K +S A K + L + R ++Y TI
Sbjct: 770 ENESASNKKSCKMSDENASENNAGGKLPFLRNLFKRKPKAPNNLRIVYREIFSYKKDVTI 829
Query: 704 CA---IIAGAQMPLFALGVSQALVAYYMDWDTTQREVKKITILFCCAAVITVIVHAIEHL 760
A ++AG P+FAL ++ V+ D+ + K ++ A+ I +++
Sbjct: 830 IALSILVAGGLYPVFALLYAK-YVSTLFDFANLEANSNKYSLYILVIAIAMFISETLKNY 888
Query: 761 SFGIMGERLTLRVREKMFSAILSNEIGWFDEMDNSSSILASRLESDATLLRTIVVDRSTI 820
++GE++ ++ ++F IL EI +FD+ ++ +L++ + D LL+T +V+ I
Sbjct: 889 YNNVIGEKVEKTMKRRLFENILYQEISFFDQDKHAPGLLSAHINRDVHLLKTGLVNNIVI 948
Query: 821 LIQNFGLVTASFVIAFILNWRITLVVVATYPLI-----ISGHISEKLFFQGYGGNLSKAY 875
L S V++F + V+ TY + I ++ + N
Sbjct: 949 FTHFIVLFLVSMVMSFYFCPIVAAVLTGTYFIFMRVFAIRARLTANKDVEKKEINQPGTV 1008
Query: 876 LKAN----------MLAAEAVSNIRTVAAFCSEDKVLELYSRELVEPSKRSFIRGQIAGI 925
N L EA N+ TV + ED L + + +K + + +
Sbjct: 1009 FAYNSDDEIFKDPSFLIQEAFYNMNTVIIYGLEDYFCNLIEKAIDYSNKGQKRKTLVNSM 1068
Query: 926 FYGIS---QFFIFSSYGLALWYGSVLMGKELASFKSVMKSFMVLIVTALAMGETLALVPD 982
+G S Q FI S A W+GS L+ + MKS + T G+ ++L D
Sbjct: 1069 LWGFSQSAQLFINS---FAYWFGSFLIRRGTILVDDFMKSLFTFLFTGSYAGKLMSLKGD 1125
Query: 983 LLKGNQMAASVFEVLDRKT--QVIGDIGEELTN---VEGTIELRGVHFSYPSRPEVVIFK 1037
+ ++ RK+ V + G + N ++G IE+ V+F Y SRP V I+K
Sbjct: 1126 SENAKLSFEKYYPLIIRKSNIDVRDNGGIRIKNKNDIKGKIEIMDVNFRYISRPNVPIYK 1185
Query: 1038 DFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYD 1071
D + K+ A+VG++GSGKSTV+SL++RFYD
Sbjct: 1186 DLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYD 1219
|
Length = 1466 |
| >gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Score = 317 bits (813), Expect = 3e-96
Identities = 172/490 (35%), Positives = 268/490 (54%), Gaps = 13/490 (2%)
Query: 135 KMRMAYLRSMLNQDISLFDTEASTGEVISAITSDIIVVQDALSEKVGNFMHYISRFLGGF 194
+R+ +L +S FD TG ++S IT D V A ++ + +G F
Sbjct: 88 DIRVRMFEKLLGLPVSFFD-RQPTGTLLSRITFDSEQVASAATDAFIVLVRETLTVIGLF 146
Query: 195 IIGFARVWQISLVTLSIVPLIALAGGMYAYVTIGLIARVRKSYVKAGEIAEEVIGNVRTV 254
I+ WQ++L+ + ++P++++ + + ++ S + +AEE + R V
Sbjct: 147 IVLLYYSWQLTLIVVVMLPVLSILMRRVSKRLRRISKEIQNSMGQVTTVAEETLQGYRVV 206
Query: 255 QAFAGEDKAVKVYKEALSNTYKYGRKAGLAKGLGLGSMHCVLFLSWSLLVWYVSVVVHKH 314
+ F G+ + + + + K A + + L+ +++++
Sbjct: 207 KLFGGQAYETRRFDAVSNRNRRLAMKMTSAGSISSPITQLIASLALAVVLFIALFQAQAG 266
Query: 315 ISNGGE--SFTTMLNVVIAGL-SLGQAAPDITAFIRAKAAAYPIFEMIERDTMSKASSKT 371
G+ +F T + +I L SL R AAA +F ++ D+ + + T
Sbjct: 267 SLTAGDFTAFITAMIALIRPLKSLTNVN---APMQRGLAAAESLFTLL--DSPPEKDTGT 321
Query: 372 GRKLDKLSGHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIE 431
R +++ G +EF++V+F YP R D D L I G+ VALVG SGSGKST+++LI
Sbjct: 322 -RAIERARGDVEFRNVTFRYPGR-DRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIP 379
Query: 432 RFYEPLSGEILLDGNNIKGLDLKWLRQQIGLVNQEPALFATTIRENILYGK-DDATMEEI 490
RFYEP SG+ILLDG+++ L LR+Q+ LV+Q+ LF TI NI YG+ + A EI
Sbjct: 380 RFYEPDSGQILLDGHDLADYTLASLRRQVALVSQDVVLFNDTIANNIAYGRTEQADRAEI 439
Query: 491 TRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSA 550
RA + A F+ LP +T +GE G+ LSGGQ+QR+AI+RA++K+ IL+LDEATSA
Sbjct: 440 ERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQRQRLAIARALLKDAPILILDEATSA 499
Query: 551 LDAESENSVQEALDRVMVGRTTVVVAHRLSTIRNADVIAVVQGRKIVKTGSHEELISNPN 610
LD ESE VQ AL+R+M GRTT+V+AHRLSTI AD I V+ +IV+ G+H EL++ N
Sbjct: 500 LDNESERLVQAALERLMQGRTTLVIAHRLSTIEKADRIVVMDDGRIVERGTHNELLAR-N 558
Query: 611 SAYAALVQLQ 620
YA L +Q
Sbjct: 559 GLYAQLHNMQ 568
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]. Length = 571 |
| >gnl|CDD|213220 cd03253, ABCC_ATM1_transporter, ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C | Back alignment and domain information |
|---|
Score = 301 bits (773), Expect = 5e-95
Identities = 126/240 (52%), Positives = 167/240 (69%), Gaps = 5/240 (2%)
Query: 382 IEFKDVSFCY-PSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGE 440
IEF++V+F Y P RP + IPAGK VA+VG SGSGKST++ L+ RFY+ SG
Sbjct: 1 IEFENVTFAYDPGRP---VLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGS 57
Query: 441 ILLDGNNIKGLDLKWLRQQIGLVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAM 500
IL+DG +I+ + L LR+ IG+V Q+ LF TI NI YG+ DAT EE+ AAK ++
Sbjct: 58 ILIDGQDIREVTLDSLRRAIGVVPQDTVLFNDTIGYNIRYGRPDATDEEVIEAAKAAQIH 117
Query: 501 SFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQ 560
I P+ ++T VGERG++LSGG+KQR+AI+RAI+KNP ILLLDEATSALD +E +Q
Sbjct: 118 DKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPPILLLDEATSALDTHTEREIQ 177
Query: 561 EALDRVMVGRTTVVVAHRLSTIRNADVIAVVQGRKIVKTGSHEELISNPNSAYAALVQLQ 620
AL V GRTT+V+AHRLSTI NAD I V++ +IV+ G+HEEL+ YA + + Q
Sbjct: 178 AALRDVSKGRTTIVIAHRLSTIVNADKIIVLKDGRIVERGTHEELL-AKGGLYAEMWKAQ 236
|
ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 236 |
| >gnl|CDD|225183 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 313 bits (805), Expect = 1e-93
Identities = 181/506 (35%), Positives = 279/506 (55%), Gaps = 25/506 (4%)
Query: 126 MYTGERQAAKMRMAYLRSMLNQDISLFDTEASTGEVISAITSDIIVVQDALSEKVGNFMH 185
+ G+R ++ + R +L +S F+ S GE+IS + ++ +++ L+ G+ +
Sbjct: 219 AHLGKRLDLELSGRFFRHLLRLPLSYFEK-RSVGEIISRV-RELEQIREFLT---GSILT 273
Query: 186 YISRFLGGFIIGFARV-----WQISLVTLSIVPLIALAGGMYAYVTIGLIARVRKSYVKA 240
I L F + F V W+++L+ L+ +PL L L + RK ++
Sbjct: 274 LIIDLL--FALIFLAVMFLYSWKLTLIVLAAIPLNVLIT---LIFQPLLRRKTRKLIEES 328
Query: 241 GEIAE---EVIGNVRTVQAFAGEDKAVKVYKEALSNTYKYGRKAGLAKGLGLGSMHCVLF 297
E E I + TV+A A E + + L+ G K + +
Sbjct: 329 AEQQSFLVETIKGIETVKALAAEPRFRSQWDNRLAKQVNIGFKTEKLALILNTIKSLLQQ 388
Query: 298 LSWSLLVWY-VSVVVHKHISNGG-ESFTTMLNVVIAGLSLGQAAPDITAFIRAKAAAYPI 355
LS L++W+ +V+ ++ G +F + I+ ++ + + T F +AK A +
Sbjct: 389 LSSVLILWFGAILVLEGELTLGQLVAFNMLAGYFISPIT--RLSQLWTDFQQAKVALERL 446
Query: 356 FEMIERDTMSKASSKTGRKLDKLSGHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVAL 415
++++ + KT L KL G IEF++VSF Y + D L+IP G+ VA+
Sbjct: 447 GDILDTPPEQE-GDKTLIHLPKLQGEIEFENVSFRYGPDDPPVLED-LSLEIPPGEKVAI 504
Query: 416 VGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIGLVNQEPALFATTIR 475
VG SGSGKST++ L+ Y+P G ILLDG ++ +DL LR+Q+G V Q+P LF+ +IR
Sbjct: 505 VGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDIDLASLRRQVGYVLQDPFLFSGSIR 564
Query: 476 ENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAI 535
ENI G +AT EEI AA+L+ A FI NLP ++T VGE G LSGGQ+QR+A++RA+
Sbjct: 565 ENIALGNPEATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRLALARAL 624
Query: 536 VKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRNADVIAVVQGRK 595
+ P ILLLDEATSALD E+E + + L +++ GRT +++AHRLSTIR+AD I V+ K
Sbjct: 625 LSKPKILLLDEATSALDPETEAIILQNLLQILQGRTVIIIAHRLSTIRSADRIIVLDQGK 684
Query: 596 IVKTGSHEELISNPNSAYAALVQLQE 621
IV+ GSHEEL+ YA L Q QE
Sbjct: 685 IVEQGSHEELL-AQGGLYARLYQQQE 709
|
Length = 709 |
| >gnl|CDD|213221 cd03254, ABCC_Glucan_exporter_like, ATP-binding cassette domain of glucan transporter and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 294 bits (756), Expect = 9e-93
Identities = 106/227 (46%), Positives = 160/227 (70%), Gaps = 2/227 (0%)
Query: 380 GHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSG 439
G IEF++V+F Y + I G+ VA+VG +G+GK+T+I+L+ RFY+P G
Sbjct: 1 GEIEFENVNFSY--DEKKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKG 58
Query: 440 EILLDGNNIKGLDLKWLRQQIGLVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEA 499
+IL+DG +I+ + K LR IG+V Q+ LF+ TI ENI G+ +AT EE+ AAK + A
Sbjct: 59 QILIDGIDIRDISRKSLRSMIGVVLQDTFLFSGTIMENIRLGRPNATDEEVIEAAKEAGA 118
Query: 500 MSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSV 559
FI LP ++T +GE G LS G++Q +AI+RA++++P IL+LDEATS +D E+E +
Sbjct: 119 HDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPKILILDEATSNIDTETEKLI 178
Query: 560 QEALDRVMVGRTTVVVAHRLSTIRNADVIAVVQGRKIVKTGSHEELI 606
QEAL+++M GRT++++AHRLSTI+NAD I V+ KI++ G+H+EL+
Sbjct: 179 QEALEKLMKGRTSIIIAHRLSTIKNADKILVLDDGKIIEEGTHDELL 225
|
Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 229 |
| >gnl|CDD|183016 PRK11176, PRK11176, lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Score = 299 bits (767), Expect = 1e-89
Identities = 173/496 (34%), Positives = 284/496 (57%), Gaps = 27/496 (5%)
Query: 136 MRMAYLRSMLNQDISLFDTEASTGEVISAITSDIIVVQDALSEKVGNFMHYISRFLGGFI 195
MR M+ +S FD + STG ++S IT D V + S + + + +G FI
Sbjct: 100 MRRRLFGHMMGMPVSFFDKQ-STGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFI 158
Query: 196 IGFARVWQISLVTLSIVPLIALAGGMYAYVTIGLIARVRKSYVK-----AGEI---AEEV 247
+ F WQ+SL+ + I P++++A I ++++ ++ K G++ AE++
Sbjct: 159 MMFYYSWQLSLILIVIAPIVSIA--------IRVVSKRFRNISKNMQNTMGQVTTSAEQM 210
Query: 248 IGNVRTVQAFAGEDKAVKVYKEALSNTYKYGRKAGLAKGLGLGSMHCVLFLSWSLLVWYV 307
+ + V F G++ K + + + + G K A + + + L+ + +++
Sbjct: 211 LKGHKEVLIFGGQEVETKRFDKVSNRMRQQGMKMVSASSISDPIIQLIASLALAFVLYAA 270
Query: 308 SV-VVHKHISNGGESFTTMLNVVIAGLSLGQAAPDITA-FIRAKAAAYPIFEMIERDTMS 365
S V ++ G + T + + +IA + ++ ++ A F R AA +F +++ +
Sbjct: 271 SFPSVMDTLTAG--TITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDLEQ-E 327
Query: 366 KASSKTGRKLDKLSGHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKST 425
K K R +++ G IEF++V+F YP + A+ IPAGK VALVG SGSGKST
Sbjct: 328 KDEGK--RVIERAKGDIEFRNVTFTYPGKEVPAL-RNINFKIPAGKTVALVGRSGSGKST 384
Query: 426 VISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIGLVNQEPALFATTIRENILYGKDDA 485
+ +L+ RFY+ GEILLDG++++ L LR Q+ LV+Q LF TI NI Y + +
Sbjct: 385 IANLLTRFYDIDEGEILLDGHDLRDYTLASLRNQVALVSQNVHLFNDTIANNIAYARTEQ 444
Query: 486 -TMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLL 544
+ E+I AA+++ AM FI+ + +T +GE G+ LSGGQ+QRIAI+RA++++ IL+L
Sbjct: 445 YSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLRDSPILIL 504
Query: 545 DEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRNADVIAVVQGRKIVKTGSHEE 604
DEATSALD ESE ++Q ALD + RT++V+AHRLSTI AD I VV+ +IV+ G+H E
Sbjct: 505 DEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEKADEILVVEDGEIVERGTHAE 564
Query: 605 LISNPNSAYAALVQLQ 620
L++ N YA L ++Q
Sbjct: 565 LLAQ-NGVYAQLHKMQ 579
|
Length = 582 |
| >gnl|CDD|184214 PRK13657, PRK13657, cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 285 bits (732), Expect = 1e-84
Identities = 158/453 (34%), Positives = 242/453 (53%), Gaps = 72/453 (15%)
Query: 202 WQISLVTLSIVPLIALAGGMYAYV---TIGLIARVRKSYVKAGEIAEEVIGNVRTVQAFA 258
W++SLV +V L + + V T A V + Y + IGNV VQ++
Sbjct: 156 WRLSLV---LVVLGIVYTLITTLVMRKTKDGQAAVEEHYHDLFAHVSDAIGNVSVVQSYN 212
Query: 259 ---GEDKAVKVYKEALSNTYKYGRKAGLAKGLGLGSMHCVLFLSWSLLVWYVSVVVHKHI 315
E +A++ + L L + VL SW W ++ V+
Sbjct: 213 RIEAETQALRDIADNL-----------------LAAQMPVL--SW----WALASVL---- 245
Query: 316 SNGGESFTTMLNVVIAGLSL---GQAA-PDITAFI-----------------------RA 348
N S TML +++ G +L GQ ++ AF+
Sbjct: 246 -NRAASTITMLAILVLGAALVQKGQLRVGEVVAFVGFATLLIGRLDQVVAFINQVFMAAP 304
Query: 349 KAAAYPIFEMIERDTMSKASSKTG-RKLDKLSGHIEFKDVSFCYPSRPDVAIFDKFCLDI 407
K + FE+ D + G L ++ G +EF DVSF Y + + D +
Sbjct: 305 KLEEF--FEVE--DAVPDVRDPPGAIDLGRVKGAVEFDDVSFSYDNSRQ-GVED-VSFEA 358
Query: 408 PAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIGLVNQEP 467
G+ VA+VG +G+GKST+I+L++R ++P SG IL+DG +I+ + LR+ I +V Q+
Sbjct: 359 KPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRTVTRASLRRNIAVVFQDA 418
Query: 468 ALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQ 527
LF +I +NI G+ DAT EE+ AA+ ++A FI P+ ++T VGERG QLSGG++Q
Sbjct: 419 GLFNRSIEDNIRVGRPDATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQ 478
Query: 528 RIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRNADV 587
R+AI+RA++K+P IL+LDEATSALD E+E V+ ALD +M GRTT ++AHRLST+RNAD
Sbjct: 479 RLAIARALLKDPPILILDEATSALDVETEAKVKAALDELMKGRTTFIIAHRLSTVRNADR 538
Query: 588 IAVVQGRKIVKTGSHEELISNPNSAYAALVQLQ 620
I V ++V++GS +EL++ +AAL++ Q
Sbjct: 539 ILVFDNGRVVESGSFDELVAR-GGRFAALLRAQ 570
|
Length = 588 |
| >gnl|CDD|213219 cd03252, ABCC_Hemolysin, ATP-binding cassette domain of hemolysin B, subfamily C | Back alignment and domain information |
|---|
Score = 260 bits (667), Expect = 5e-80
Identities = 120/240 (50%), Positives = 166/240 (69%), Gaps = 4/240 (1%)
Query: 382 IEFKDVSFCYPSRPDVA-IFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGE 440
I F+ V F Y +PD I D L I G++V +VG SGSGKST+ LI+RFY P +G
Sbjct: 1 ITFEHVRFRY--KPDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGR 58
Query: 441 ILLDGNNIKGLDLKWLRQQIGLVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAM 500
+L+DG+++ D WLR+Q+G+V QE LF +IR+NI +ME + AAKL+ A
Sbjct: 59 VLVDGHDLALADPAWLRRQVGVVLQENVLFNRSIRDNIALADPGMSMERVIEAAKLAGAH 118
Query: 501 SFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQ 560
FIS LPE ++T VGE+G LSGGQ+QRIAI+RA++ NP IL+ DEATSALD ESE+++
Sbjct: 119 DFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPRILIFDEATSALDYESEHAIM 178
Query: 561 EALDRVMVGRTTVVVAHRLSTIRNADVIAVVQGRKIVKTGSHEELISNPNSAYAALVQLQ 620
+ + GRT +++AHRLST++NAD I V++ +IV+ GSH+EL++ N YA L QLQ
Sbjct: 179 RNMHDICAGRTVIIIAHRLSTVKNADRIIVMEKGRIVEQGSHDELLAE-NGLYAYLYQLQ 237
|
The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. Length = 237 |
| >gnl|CDD|213215 cd03248, ABCC_TAP, ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C | Back alignment and domain information |
|---|
Score = 260 bits (665), Expect = 6e-80
Identities = 111/221 (50%), Positives = 156/221 (70%)
Query: 376 DKLSGHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYE 435
D L G ++F++V+F YP+RPD + + G++ ALVG SGSGKSTV++L+E FY+
Sbjct: 6 DHLKGIVKFQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQ 65
Query: 436 PLSGEILLDGNNIKGLDLKWLRQQIGLVNQEPALFATTIRENILYGKDDATMEEITRAAK 495
P G++LLDG I + K+L ++ LV QEP LFA ++++NI YG + E + AA+
Sbjct: 66 PQGGQVLLDGKPISQYEHKYLHSKVSLVGQEPVLFARSLQDNIAYGLQSCSFECVKEAAQ 125
Query: 496 LSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAES 555
+ A SFIS L ++T+VGE+G QLSGGQKQR+AI+RA+++NP +L+LDEATSALDAES
Sbjct: 126 KAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARALIRNPQVLILDEATSALDAES 185
Query: 556 ENSVQEALDRVMVGRTTVVVAHRLSTIRNADVIAVVQGRKI 596
E VQ+AL RT +V+AHRLST+ AD I V+ G +I
Sbjct: 186 EQQVQQALYDWPERRTVLVIAHRLSTVERADQILVLDGGRI 226
|
TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. Length = 226 |
| >gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug resistance protein-like transporters | Back alignment and domain information |
|---|
Score = 250 bits (641), Expect = 3e-77
Identities = 97/214 (45%), Positives = 129/214 (60%), Gaps = 43/214 (20%)
Query: 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEI 441
IEFK+VSF YP RP + L I G+ VA+VG SGSGKST++ L+ R Y+P SGEI
Sbjct: 1 IEFKNVSFSYPGRP-KPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEI 59
Query: 442 LLDGNNIKGLDLKWLRQQIGLVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMS 501
L+DG +++ LDL+ LR+ I V Q+P LF+ TIRENI
Sbjct: 60 LIDGVDLRDLDLESLRKNIAYVPQDPFLFSGTIRENI----------------------- 96
Query: 502 FISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQE 561
LSGGQ+QRIAI+RA++++P IL+LDEATSALD E+E + E
Sbjct: 97 -------------------LSGGQRQRIAIARALLRDPPILILDEATSALDPETEALILE 137
Query: 562 ALDRVMVGRTTVVVAHRLSTIRNADVIAVVQGRK 595
AL + G+T +V+AHRLSTIR+AD I V+ +
Sbjct: 138 ALRALAKGKTVIVIAHRLSTIRDADRIIVLDDGR 171
|
The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 171 |
| >gnl|CDD|233596 TIGR01846, type_I_sec_HlyB, type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Score = 265 bits (679), Expect = 3e-76
Identities = 147/430 (34%), Positives = 232/430 (53%), Gaps = 33/430 (7%)
Query: 208 TLSIVPLIALAGGMYAYVTIGLIARVRK----SYVKAGE----IAEEVIGNVRTVQAFAG 259
TL+ V + +L YA +++ + +RK + ++ + E V G + T++A A
Sbjct: 279 TLTGVVIGSLV--CYALLSVFVGPILRKRVEDKFERSAAATSFLVESVTG-IETIKATAT 335
Query: 260 EDKAVKVYKEALSNTYKYGRKAGLAKGLGLGSMHCVLFLSWSLLVWY-VSVVVHKHISNG 318
E + + L+ + + ++ + L++++L+W+ +V+ +S G
Sbjct: 336 EPQFQNRWDRQLAAYVAASFRVTNLGNIAGQAIELIQKLTFAILLWFGAHLVIGGALSPG 395
Query: 319 GESFTTMLNVVIAG--LSLGQAAPDITAFIRAKAAAYPIFEMIER-----DTMSKASSKT 371
ML + L L Q D F + A +ER ++ ++ S
Sbjct: 396 QLVAFNMLAGRVTQPVLRLAQLWQD---FQQTGIA-------LERLGDILNSPTEPRSAG 445
Query: 372 GRKLDKLSGHIEFKDVSFCYPSRPDVA-IFDKFCLDIPAGKIVALVGGSGSGKSTVISLI 430
L +L G I F+++ F Y PD + LDI G+ + +VG SGSGKST+ L+
Sbjct: 446 LAALPELRGAITFENIRFRY--APDSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLL 503
Query: 431 ERFYEPLSGEILLDGNNIKGLDLKWLRQQIGLVNQEPALFATTIRENILYGKDDATMEEI 490
+R Y P G++L+DG ++ D WLR+Q+G+V QE LF+ +IR+NI A E +
Sbjct: 504 QRLYTPQHGQVLVDGVDLAIADPAWLRRQMGVVLQENVLFSRSIRDNIALCNPGAPFEHV 563
Query: 491 TRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSA 550
AAKL+ A FIS LP+ + T+VGE+G LSGGQ+QRIAI+RA+V NP IL+ DEATSA
Sbjct: 564 IHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQRIAIARALVGNPRILIFDEATSA 623
Query: 551 LDAESENSVQEALDRVMVGRTTVVVAHRLSTIRNADVIAVVQGRKIVKTGSHEELISNPN 610
LD ESE + + + GRT +++AHRLST+R D I V++ +I ++G HEEL++
Sbjct: 624 LDYESEALIMRNMREICRGRTVIIIAHRLSTVRACDRIIVLEKGQIAESGRHEELLALQ- 682
Query: 611 SAYAALVQLQ 620
YA L Q Q
Sbjct: 683 GLYARLWQQQ 692
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 694 |
| >gnl|CDD|227590 COG5265, ATM1, ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 246 bits (630), Expect = 2e-71
Identities = 167/503 (33%), Positives = 250/503 (49%), Gaps = 37/503 (7%)
Query: 132 QAAKMRMAY--LRSMLNQDISLFDTEASTGEVISAITSDIIVVQDALSEKVGNFMHYISR 189
Q A +AY + + + F E TG + AI ++ L + N + +
Sbjct: 11 QIAVRVLAYVTFFHLHSLSL-RFHLERRTGGLSRAIERGTKGIETILRWILFNILPTLVE 69
Query: 190 FLGGFIIGFARV--WQISLVTLSIVPLIALAGGMYAYVTI-------GLIARVRKSYVKA 240
+I RV W +L TL V L Y T+ + + A
Sbjct: 70 ISLVAVI-LWRVYGWWFALTTLVTVIL-------YLLFTVIVSDWRTDFRRLMNNADSDA 121
Query: 241 GEIAEEVIGNVRTVQAFAGEDKAVKVYKEALSNTYKYGRKAGLAKGLGLGSMHCVLFLSW 300
A + + N TV+ F E+ Y AL K K ++ + L +F +
Sbjct: 122 NAKAIDSLLNFETVKYFGNEEYEAVRYDHALETYEKAAIKVHVSLLV-LNFGQTAIFSTG 180
Query: 301 SLLVWYVSV--VVHKHISNGGESF--TTMLNVVIAGLSLGQAAPDI-TAFIRAKAAAYPI 355
++ +S V ++ G + + I LG + +I A +
Sbjct: 181 LRVMMTMSALGVEEGQLTVGDLVNVNALLFQLSIPLNFLGFSYREIRQALTDMEK----- 235
Query: 356 FEMIERDTMSKASSKTGRKLDKLS-GHIEFKDVSFCY-PSRPDVAIFDKFCLDIPAGKIV 413
+ + + L + G + F +VSF Y P RP I + IP GK V
Sbjct: 236 MFDLLDVEAEVSDAPDAPPLWPVRLGAVAFINVSFAYDPRRP---ILNGISFTIPLGKTV 292
Query: 414 ALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIGLVNQEPALFATT 473
A+VG SG+GKST++ L+ RFY+ SG I +DG +I+ + + LR+ IG+V Q+ LF T
Sbjct: 293 AIVGESGAGKSTILRLLFRFYDVNSGSITIDGQDIRDVTQQSLRRAIGIVPQDTVLFNDT 352
Query: 474 IRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISR 533
I NI YG+ DAT EE+ AA+ ++ FI +LPE ++T VGERG++LSGG+KQR+AI+R
Sbjct: 353 IAYNIKYGRPDATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGLKLSGGEKQRVAIAR 412
Query: 534 AIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRNADVIAVVQG 593
I+KNP IL+LDEATSALD +E ++Q AL V GRTT+V+AHRLSTI +AD I V+
Sbjct: 413 TILKNPPILILDEATSALDTHTEQAIQAALREVSAGRTTLVIAHRLSTIIDADEIIVLDN 472
Query: 594 RKIVKTGSHEELISNPNSAYAAL 616
+IV+ G+HEEL++ YA +
Sbjct: 473 GRIVERGTHEELLAA-GGLYAEM 494
|
Length = 497 |
| >gnl|CDD|213212 cd03245, ABCC_bacteriocin_exporters, ATP-binding cassette domain of bacteriocin exporters, subfamily C | Back alignment and domain information |
|---|
Score = 227 bits (580), Expect = 4e-68
Identities = 97/221 (43%), Positives = 142/221 (64%), Gaps = 1/221 (0%)
Query: 380 GHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSG 439
G IEF++VSF YP++ A+ D L I AG+ VA++G GSGKST++ L+ Y+P SG
Sbjct: 1 GRIEFRNVSFSYPNQEIPAL-DNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSG 59
Query: 440 EILLDGNNIKGLDLKWLRQQIGLVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEA 499
+LLDG +I+ LD LR+ IG V Q+ LF T+R+NI G A E I RAA+L+
Sbjct: 60 SVLLDGTDIRQLDPADLRRNIGYVPQDVTLFYGTLRDNITLGAPLADDERILRAAELAGV 119
Query: 500 MSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSV 559
F++ P + Q+GERG LSGGQ+Q +A++RA++ +P ILLLDE TSA+D SE +
Sbjct: 120 TDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPPILLLDEPTSAMDMNSEERL 179
Query: 560 QEALDRVMVGRTTVVVAHRLSTIRNADVIAVVQGRKIVKTG 600
+E L +++ +T +++ HR S + D I V+ +IV G
Sbjct: 180 KERLRQLLGDKTLIIITHRPSLLDLVDRIIVMDSGRIVADG 220
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. Length = 220 |
| >gnl|CDD|234189 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Score = 239 bits (612), Expect = 4e-67
Identities = 139/427 (32%), Positives = 228/427 (53%), Gaps = 32/427 (7%)
Query: 194 FIIGFARVWQISLVTLSIVPLIALAGGMYAYVTIGLIAR-VRKSYVKAGE---IAEEVIG 249
IIG + V L +PLI L G + ++R +S ++ + + E +
Sbjct: 281 AIIG----GPLVWVPLVAIPLILLPG----LLLQRPLSRLAEESMRESAQRNAVLVESLS 332
Query: 250 NVRTVQAFAGEDKAVKVYKEALSNTYKYGRKAGLAKGLGLGSMHCVLFL----SWSLLVW 305
+ T++A E + + +++ ++ + G K+ + L + + F+ S +++V
Sbjct: 333 GLETIKALNAEGRFQRRWEQTVAALARSGLKS---RFLSNLATNFAQFIQQLVSVAIVVV 389
Query: 306 YVSVVVHKHISNGGESFTTMLNV-VIAGLSLGQAAPDITAFIRAKAAAYPIFEMI----E 360
V ++ ++ GG ML+ +A LGQ A +T + +AK A + E++ E
Sbjct: 390 GVYLISDGELTMGGLIACVMLSGRALA--PLGQLAGLLTRYQQAKTALQSLDELMQLPVE 447
Query: 361 RDTMSKASSKTGRKLDKLSGHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSG 420
R +L G IEF++VSF YP + A+ D L I G+ VA++G G
Sbjct: 448 RP-----EGTRFLHRPRLQGEIEFRNVSFAYPGQETPAL-DNVSLTIRPGEKVAIIGRIG 501
Query: 421 SGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIGLVNQEPALFATTIRENILY 480
SGKST++ L+ Y+P G +LLDG +I+ +D LR+ IG V Q+P LF T+R+NI
Sbjct: 502 SGKSTLLKLLLGLYQPTEGSVLLDGVDIRQIDPADLRRNIGYVPQDPRLFYGTLRDNIAL 561
Query: 481 GKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPS 540
G A EEI RAA+L+ F+ P+ + Q+GERG LSGGQ+Q +A++RA++++P
Sbjct: 562 GAPYADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQAVALARALLRDPP 621
Query: 541 ILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRNADVIAVVQGRKIVKTG 600
ILLLDE TSA+D SE ++ L R + G+T V+V HR S + D I V+ +IV G
Sbjct: 622 ILLLDEPTSAMDNRSEERFKDRLKRWLAGKTLVLVTHRTSLLDLVDRIIVMDNGRIVADG 681
Query: 601 SHEELIS 607
++++
Sbjct: 682 PKDQVLE 688
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]. Length = 694 |
| >gnl|CDD|130260 TIGR01192, chvA, glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Score = 232 bits (592), Expect = 2e-65
Identities = 162/463 (34%), Positives = 251/463 (54%), Gaps = 54/463 (11%)
Query: 183 FM-HYISRFLGGFII---GFARVWQISLVTLSIVPLIALAGGMYAYVTIGLIARVRKSYV 238
FM +++ F+ F++ FA W++S+V L+ L Y+ LIA++
Sbjct: 133 FMRQHLATFVALFLLIPTAFAMDWRLSIV------LMVLG---ILYI---LIAKLVMQRT 180
Query: 239 KAGEIAEE------------VIGNVRTVQAF---AGEDKAVKVYKEAL-SNTYKYGRKAG 282
K G+ A E I NV V ++ E A+K + L S Y
Sbjct: 181 KNGQAAVEHHYHNVFKHVSDSISNVSVVHSYNRIEAETSALKQFTNNLLSAQYPVLDWWA 240
Query: 283 LAKGL----GLGSMHCVLFLSWSLLVWYVSVVVHKHISNGGE--SFTTMLNVVIAGLSLG 336
LA GL SM C+L + +V+V K + GE +F N++I L
Sbjct: 241 LASGLNRMASTISMMCILVIG--------TVLVIKGELSVGEVIAFIGFANLLIG--RLD 290
Query: 337 QAAPDITAFIRAKAAAYPIFEMIERDTMSKASSKTGRKLDKLSGHIEFKDVSFCYPSRPD 396
Q + IT A+A F++ E + +L + G +EF+ ++F + +
Sbjct: 291 QMSGFITQIFEARAKLEDFFDL-EDSVFQREEPADAPELPNVKGAVEFRHITFEFANSSQ 349
Query: 397 VAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWL 456
+FD + AG+ VA+VG +G+GK+T+I+L++R Y+P G+IL+DG +I + + L
Sbjct: 350 -GVFD-VSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGIDINTVTRESL 407
Query: 457 RQQIGLVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGE 516
R+ I V Q+ LF +IRENI G++ AT EE+ AAK + A FI ++T VGE
Sbjct: 408 RKSIATVFQDAGLFNRSIRENIRLGREGATDEEVYEAAKAAAAHDFILKRSNGYDTLVGE 467
Query: 517 RGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVA 576
RG +LSGG++QR+AI+RAI+KN IL+LDEATSALD E+E V+ A+D + RTT ++A
Sbjct: 468 RGNRLSGGERQRLAIARAILKNAPILVLDEATSALDVETEARVKNAIDALRKNRTTFIIA 527
Query: 577 HRLSTIRNAD-VIAVVQGRKIVKTGSHEELISNPNSAYAALVQ 618
HRLST+RNAD V+ + QGR +++ GS +ELI + + L++
Sbjct: 528 HRLSTVRNADLVLFLDQGR-LIEKGSFQELI-QKDGRFYKLLR 568
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 585 |
| >gnl|CDD|163508 TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Score = 232 bits (593), Expect = 2e-64
Identities = 114/303 (37%), Positives = 179/303 (59%), Gaps = 18/303 (5%)
Query: 321 SFTTMLNVVIAGLSLGQAAPDITA-FIRAK-AAAYPIFEMIERDTMSKASSKTGRKLDKL 378
SF +N ++ G ++ R P+ ++E + A S+ +L
Sbjct: 421 SFLEPVNNLVG---FGGTLQELEGDLNRLDDVLRNPVDPLLEEEEAPAAGSEPSPRL--- 474
Query: 379 SGHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLS 438
SG++E ++++F Y S + + + F L + G+ VALVGGSGSGKST+ L+ Y+P S
Sbjct: 475 SGYVELRNITFGY-SPLEPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWS 533
Query: 439 GEILLDGNNIKGLDLKWLRQQIGLVNQEPALFATTIRENI-LYGKDDATM--EEITRAAK 495
GEIL DG + + + L + +V+Q+ LF T+R+N+ L+ D T+ ++ RA K
Sbjct: 534 GEILFDGIPREEIPREVLANSVAMVDQDIFLFEGTVRDNLTLW---DPTIPDADLVRACK 590
Query: 496 LSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAES 555
+ I++ P ++ ++ E G LSGGQ+QR+ I+RA+V+NPSIL+LDEATSALD E+
Sbjct: 591 DAAIHDVITSRPGGYDAELAEGGANLSGGQRQRLEIARALVRNPSILILDEATSALDPET 650
Query: 556 ENSVQEALDRVMVGRTTVVVAHRLSTIRNADVIAVVQGRKIVKTGSHEELISNPNSAYAA 615
E + + L R G T ++VAHRLSTIR+ D I V++ K+V+ G+HEEL AYA
Sbjct: 651 EKIIDDNLRR--RGCTCIIVAHRLSTIRDCDEIIVLERGKVVQRGTHEEL-WAVGGAYAR 707
Query: 616 LVQ 618
L++
Sbjct: 708 LIR 710
|
This protein describes a multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHLM, Nitrile Hydratase Leader Microcin [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 710 |
| >gnl|CDD|234033 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Score = 223 bits (570), Expect = 5e-63
Identities = 95/244 (38%), Positives = 134/244 (54%), Gaps = 4/244 (1%)
Query: 348 AKAAAYPIFEMIERDTMSKASSKTGRKLDKLSGHIEFKDVSFCYPSRPDVAIFDKFCLDI 407
AAA +F +++ A S +EF VS YP R +
Sbjct: 290 GVAAAEALFAVLDAAPRPLAGKAPVTAAPAPS--LEFSGVSVAYPGRRPAL--RPVSFTV 345
Query: 408 PAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIGLVNQEP 467
P G+ VALVG SG+GKST+++L+ F +P G I ++G + D R QI V Q P
Sbjct: 346 PPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSWRDQIAWVPQHP 405
Query: 468 ALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQ 527
LFA TI ENI + DA+ EI A + + F++ LP+ +T +GE G LSGGQ Q
Sbjct: 406 FLFAGTIAENIRLARPDASDAEIREALERAGLDEFVAALPQGLDTPIGEGGAGLSGGQAQ 465
Query: 528 RIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRNADV 587
R+A++RA +++ +LLLDE T+ LDAE+E V EAL + GRT ++V HRL+ AD
Sbjct: 466 RLALARAFLRDAPLLLLDEPTAHLDAETEAEVLEALRALAQGRTVLLVTHRLALAALADR 525
Query: 588 IAVV 591
I V+
Sbjct: 526 IVVL 529
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD. Length = 529 |
| >gnl|CDD|227321 COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 223 bits (570), Expect = 1e-62
Identities = 101/241 (41%), Positives = 150/241 (62%), Gaps = 4/241 (1%)
Query: 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEI 441
I +++SF YP A+ D L I AG++ ALVG SG+GKST+++L+ F P GEI
Sbjct: 321 ISLENLSFRYPDG-KPALSD-LNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEI 378
Query: 442 LLDGNNIKGLDLKWLRQQIGLVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMS 501
++G +++ L + R+QI V+Q P LFA TIRENIL + DA+ EEI A + +
Sbjct: 379 RVNGIDLRDLSPEAWRKQISWVSQNPYLFAGTIRENILLARPDASDEEIIAALDQAGLLE 438
Query: 502 FISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQE 561
F+ P+ +T +GE G LSGGQ QR+A++RA++ S+LLLDE T+ LDAE+E + +
Sbjct: 439 FV-PKPDGLDTVIGEGGAGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQ 497
Query: 562 ALDRVMVGRTTVVVAHRLSTIRNADVIAVVQGRKIVKTGSHEELISNPNSAYAALVQLQE 621
AL + +T +V+ HRL +AD I V+ ++V+ G+HEEL YA L++ QE
Sbjct: 498 ALQELAKQKTVLVITHRLEDAADADRIVVLDNGRLVEQGTHEELSEK-QGLYANLLKQQE 556
Query: 622 A 622
Sbjct: 557 G 557
|
Length = 559 |
| >gnl|CDD|227320 COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 214 bits (547), Expect = 2e-59
Identities = 120/503 (23%), Positives = 216/503 (42%), Gaps = 38/503 (7%)
Query: 134 AKMRMAYLRSMLNQDISLFDTEASTGEVISAITSDIIVVQDALSEKVGNFMHYISRFLGG 193
+ +R+ + +L +G++++ + +D+ + + ++ I+ +
Sbjct: 91 SALRVRLFEKLEPLSPALLL-RYRSGDLLNRLVADVDALDNL-------YLRVIAPAVVA 142
Query: 194 FIIGFARVWQISLVTLSIVPLIALAGGMYAYVTIGLIARVRKSYVKAGEIAEEVI---GN 250
++ I L SI + L + + LI Y + +
Sbjct: 143 LVLIAVVT--IGLSFFSIPLALLLGLILLL---LLLIIPTL-FYRAGRKFGAHLAQGRAA 196
Query: 251 VRT-----VQAFA------GEDKAVKVYKEALSNTYKYGRKAGLAKGLGLGSMHCV-LFL 298
+R+ VQ A ED + ++ K RK GL + + L
Sbjct: 197 LRSQFTDWVQGQAELLIFGAEDAYRTALEATEASWLKAQRKQARFTGLSDAILLLIAGLL 256
Query: 299 SWSLLVWYVSVVVHKHISNGGESFTTMLNVVIAGLSLGQAAPDIT--AFIRAKAAAYPIF 356
LL+W + V G + ++ + +A + AF
Sbjct: 257 VIGLLLWMAAQVGA-----GALAQPGAALALLVIFAALEAFEPLAPGAFQHLGQVIASAR 311
Query: 357 EMIERDTMSKASSKTGRKLDKLSGHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALV 416
+ + + + +E ++VSF YP + A F L + G+ VA++
Sbjct: 312 RLNDILDQKPEVTFPDEQTATTGQALELRNVSFTYPGQQTKA-LKNFNLTLAQGEKVAIL 370
Query: 417 GGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIGLVNQEPALFATTIRE 476
G SGSGKST++ L+ ++P G I L+G I LD + LR+ I ++ Q LF+ T+R+
Sbjct: 371 GRSGSGKSTLLQLLAGAWDPQQGSITLNGVEIASLDEQALRETISVLTQRVHLFSGTLRD 430
Query: 477 NILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIV 536
N+ DA+ EE+ A + + + P+ T +GE G +LSGG+++R+A++RA++
Sbjct: 431 NLRLANPDASDEELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRRLALARALL 490
Query: 537 KNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRNADVIAVVQGRKI 596
+ + LLDE T LD +E V L G+T ++V HRL + D I V+ KI
Sbjct: 491 HDAPLWLLDEPTEGLDPITERQVLALLFEHAEGKTLLMVTHRLRGLERMDRIIVLDNGKI 550
Query: 597 VKTGSHEELISNPNSAYAALVQL 619
++ G+H EL++N N Y L QL
Sbjct: 551 IEEGTHAELLAN-NGRYKRLYQL 572
|
Length = 573 |
| >gnl|CDD|234357 TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 215 bits (551), Expect = 4e-59
Identities = 142/437 (32%), Positives = 220/437 (50%), Gaps = 36/437 (8%)
Query: 198 FARVWQISLVTLSIVPLIALAGGMYAYVTIGLIARVRKSYVKAGEIAEEVIGNVRTVQAF 257
F W+++LV +++ + + + + + R+ +G+I+ TVQ
Sbjct: 271 FYYSWKLALVAVALALVAIAVTLVLGLLQVR---KERRLLELSGKISGL------TVQLI 321
Query: 258 AG---------EDKAVKVYKEALSNTYKYGRKAGLAKGLGLGSMHCVLFLSWSLLVWY-- 306
G E++A + + S K A + L + VL + S ++
Sbjct: 322 NGISKLRVAGAENRAFARWAKLFSRQRKLELSAQRIEN-LLTVFNAVLPVLTSAALFAAA 380
Query: 307 VSVVVHKHISNGG-ESFTTMLNVVIAG-LSLGQAAPDITAFIRAKAAAYPIFEMIERDTM 364
+S++ +S G +F T L I A I A PI E +
Sbjct: 381 ISLLGGAGLSLGSFLAFNTAFGSFSGAVTQLSNTLISILAVIPLWERAKPILEALPEVDE 440
Query: 365 SKASSKTGRKLDKLSGHIEFKDVSFCYPSRPD-VAIFDKFCLDIPAGKIVALVGGSGSGK 423
+K KLSG IE V+F Y RPD I D L I G+ VA+VG SGSGK
Sbjct: 441 AKTDP------GKLSGAIEVDRVTFRY--RPDGPLILDDVSLQIEPGEFVAIVGPSGSGK 492
Query: 424 STVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIGLVNQEPALFATTIRENILYGKD 483
ST++ L+ F P SG + DG ++ GLD++ +R+Q+G+V Q L + +I ENI G
Sbjct: 493 STLLRLLLGFETPESGSVFYDGQDLAGLDVQAVRRQLGVVLQNGRLMSGSIFENIA-GGA 551
Query: 484 DATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILL 543
T++E AA+++ I +P T + E G LSGGQ+QR+ I+RA+V+ P ILL
Sbjct: 552 PLTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIARALVRKPRILL 611
Query: 544 LDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRNADVIAVVQGRKIVKTGSHE 603
DEATSALD ++ V E+L+R+ V R +V+AHRLSTIRNAD I V+ ++V+ G+++
Sbjct: 612 FDEATSALDNRTQAIVSESLERLKVTR--IVIAHRLSTIRNADRIYVLDAGRVVQQGTYD 669
Query: 604 ELISNPNSAYAALVQLQ 620
EL++ +A L + Q
Sbjct: 670 ELMARE-GLFAQLARRQ 685
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal leader sequence cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, members of protein families related to nitrile hydratase alpha subunit or to nif11 have undergone paralogous family expansions, with members possessing a putative bacteriocin cleavage region ending with a classic Gly-Gly motif. Those sets of putative bacteriocins, members of this protein family and its partners TIGR03794 and TIGR03796, and cyclodehydratase/docking scaffold fusion proteins of thiazole/oxazole biosynthesis frequently show correlated species distribution and co-clustering within many of those genomes [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 686 |
| >gnl|CDD|213211 cd03244, ABCC_MRP_domain2, ATP-binding cassette domain 2 of multidrug resistance-associated protein | Back alignment and domain information |
|---|
Score = 193 bits (493), Expect = 4e-56
Identities = 79/224 (35%), Positives = 127/224 (56%), Gaps = 6/224 (2%)
Query: 380 GHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSG 439
G IEFK+VS Y + I G+ V +VG +GSGKS+++ + R E SG
Sbjct: 1 GDIEFKNVSLRYRPNLPPVL-KNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSG 59
Query: 440 EILLDGNNIKGLDLKWLRQQIGLVNQEPALFATTIRENI--LYGKDDATMEEITRAAKLS 497
IL+DG +I + L LR +I ++ Q+P LF+ TIR N+ D EE+ +A +
Sbjct: 60 SILIDGVDISKIGLHDLRSRISIIPQDPVLFSGTIRSNLDPFGEYSD---EELWQALERV 116
Query: 498 EAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESEN 557
F+ +LP +T V E G LS GQ+Q + ++RA+++ IL+LDEAT+++D E++
Sbjct: 117 GLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSKILVLDEATASVDPETDA 176
Query: 558 SVQEALDRVMVGRTTVVVAHRLSTIRNADVIAVVQGRKIVKTGS 601
+Q+ + T + +AHRL TI ++D I V+ ++V+ S
Sbjct: 177 LIQKTIREAFKDCTVLTIAHRLDTIIDSDRILVLDKGRVVEFDS 220
|
The ABC subfamily C is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 221 |
| >gnl|CDD|182733 PRK10790, PRK10790, putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Score = 204 bits (520), Expect = 9e-56
Identities = 154/514 (29%), Positives = 258/514 (50%), Gaps = 39/514 (7%)
Query: 135 KMRMAYLRSMLNQDISLFDTEASTGEVISAITSDIIVVQDALSEKVGNFMHYISRFLGGF 194
++R + + L Q +S FDT+ G++IS +T+D V++D V + + +G
Sbjct: 99 QLRTDVMDAALRQPLSAFDTQP-VGQLISRVTNDTEVIRDLYVTVVATVLRSAA-LIGAM 156
Query: 195 IIG-FARVWQISLVTLSIVPLIALAGGMYAYVTIGLIARVRKSYVKAGEIAE---EVIGN 250
++ F+ W+++LV + I P + + +Y + ++ RVR +Y+ +I + EVI
Sbjct: 157 LVAMFSLDWRMALVAIMIFPAVLVVMVIYQRYSTPIVRRVR-AYL--ADINDGFNEVING 213
Query: 251 VRTVQAFAGEDKAVKVYKEALSNTYKYGRKAGLAKGL---GLGSMHCVLFLSWSLLVWYV 307
+ +Q F + + + EA + Y + G L S+ L L L+++
Sbjct: 214 MSVIQQFRQQARFGERMGEASRSHYMARMQTLRLDGFLLRPLLSLFSALILCGLLMLFGF 273
Query: 308 SV-------VVHKHISNGGESFTTMLNVVIAGLSLGQAAPDITAFIRAKAAAYPIFEMIE 360
S V++ IS G LN + L+ Q+ +A A +FE+
Sbjct: 274 SASGTIEVGVLYAFISYLGR-----LNEPLIELTTQQS-----MLQQAVVAGERVFEL-- 321
Query: 361 RDTMSKASSKTGRKLDKLSG-HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGS 419
M + G L I+ +VSF Y R D + L +P+ VALVG +
Sbjct: 322 ---MDGPRQQYGNDDRPLQSGRIDIDNVSFAY--RDDNLVLQNINLSVPSRGFVALVGHT 376
Query: 420 GSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIGLVNQEPALFATTIRENIL 479
GSGKST+ SL+ +Y GEI LDG + L LRQ + +V Q+P + A T N+
Sbjct: 377 GSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLSHSVLRQGVAMVQQDPVVLADTFLANVT 436
Query: 480 YGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNP 539
G+ D + E++ +A + + +LP+ T +GE+G LS GQKQ +A++R +V+ P
Sbjct: 437 LGR-DISEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQLLALARVLVQTP 495
Query: 540 SILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRNADVIAVVQGRKIVKT 599
IL+LDEAT+ +D+ +E ++Q+AL V T VV+AHRLSTI AD I V+ + V+
Sbjct: 496 QILILDEATANIDSGTEQAIQQALAAVREHTTLVVIAHRLSTIVEADTILVLHRGQAVEQ 555
Query: 600 GSHEELISNPNSAYAALVQLQEAASQQSNSSQCP 633
G+H++L++ Y + QLQ A + + S +
Sbjct: 556 GTHQQLLAA-QGRYWQMYQLQLAGEELAASVREE 588
|
Length = 592 |
| >gnl|CDD|236865 PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 200 bits (510), Expect = 2e-54
Identities = 86/246 (34%), Positives = 135/246 (54%), Gaps = 15/246 (6%)
Query: 379 SGHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLS 438
+ +VSF YP +P + L I AG+ VAL+G +G GKST++ L+ R ++P
Sbjct: 336 QVSLTLNNVSFTYPDQPQPVL-KGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQ 394
Query: 439 GEILLDGNNIKGLDLKWLRQQIGLVNQEPALFATTIRENILYGKDDATMEEITRA----- 493
GEILL+G I LRQ I +V+Q LF+ T+R+N+L +A+ E +
Sbjct: 395 GEILLNGQPIADYSEAALRQAISVVSQRVHLFSATLRDNLLLAAPNASDEALIEVLQQVG 454
Query: 494 -AKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALD 552
KL E + +GE G QLSGG+++R+ I+RA++ + +LLLDE T LD
Sbjct: 455 LEKLLED-------DKGLNAWLGEGGRQLSGGEQRRLGIARALLHDAPLLLLDEPTEGLD 507
Query: 553 AESENSVQEALDRVMVGRTTVVVAHRLSTIRNADVIAVVQGRKIVKTGSHEELISNPNSA 612
AE+E + E L +T +++ HRL+ + D I V+ +I++ G+H+EL++
Sbjct: 508 AETERQILELLAEHAQNKTVLMITHRLTGLEQFDRICVMDNGQIIEQGTHQELLAQQG-R 566
Query: 613 YAALVQ 618
Y L Q
Sbjct: 567 YYQLKQ 572
|
Length = 574 |
| >gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Score = 205 bits (522), Expect = 1e-53
Identities = 177/712 (24%), Positives = 304/712 (42%), Gaps = 125/712 (17%)
Query: 15 NNSSNNNNNNNTEDQESSKKQQQKRSVSLFKLFA----------------FADFYDYILM 58
N S++N + D+ +S+ + L LF F+ D ++
Sbjct: 771 NESASNKKSCKMSDENASENNAGGKLPFLRNLFKRKPKAPNNLRIVYREIFSYKKDVTII 830
Query: 59 SLGSIGACVHGVSVPVFFIFFGKLINIIGLAYLFPKTASHKVAKYSLDFVYLSVAILFSS 118
+L + V G PVF + + K ++ + + F ++ KYSL + +++A+ S
Sbjct: 831 ALSIL---VAGGLYPVFALLYAKYVSTL---FDFANLEANS-NKYSLYILVIAIAMFISE 883
Query: 119 WIEVSCWMYTGERQAAKMRMAYLRSMLNQDISLFDTEASTGEVISA-ITSDIIVVQDALS 177
++ GE+ M+ ++L Q+IS FD + ++SA I D+ +++ L
Sbjct: 884 TLKNYYNNVIGEKVEKTMKRRLFENILYQEISFFDQDKHAPGLLSAHINRDVHLLKTGLV 943
Query: 178 EKVGNFMHYISRFLGGFIIGFARVWQISLVTLSIVPLIA--LAGGMYAYVTIGLI-ARVR 234
+ F H+I FL ++ F P++A L G + ++ + I AR+
Sbjct: 944 NNIVIFTHFIVLFLVSMVMSF-----------YFCPIVAAVLTGTYFIFMRVFAIRARLT 992
Query: 235 KS----------------YVKAGEI-------AEEVIGNVRTVQAFAGEDKAVKVYKEAL 271
+ Y EI +E N+ TV + ED + ++A+
Sbjct: 993 ANKDVEKKEINQPGTVFAYNSDDEIFKDPSFLIQEAFYNMNTVIIYGLEDYFCNLIEKAI 1052
Query: 272 SNTYKYGRKAGLAKGLGLGSMHCVLFLSWSLLVWYVSVVVHKHISNGGESFTTMLNVVIA 331
+ K ++ L + G S W+ S ++ + + ++ +
Sbjct: 1053 DYSNKGQKRKTLVNSMLWGFSQSAQLFINSFAYWFGSFLIRRGTILVDDFMKSLFTFLFT 1112
Query: 332 GLSLGQAAPDITAFIRAKAAAYPIFEMIERDTMSKASSKTGRKL---DKLSGHIEFKDVS 388
G G+ AK + + +I R + G ++ + + G IE DV+
Sbjct: 1113 GSYAGKLMSLKGDSENAKLSFEKYYPLIIRKSNIDVRDNGGIRIKNKNDIKGKIEIMDVN 1172
Query: 389 FCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNI 448
F Y SRP+V I+ + K A+VG +GSGKSTV+SL+ RFY+ + ++ N
Sbjct: 1173 FRYISRPNVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEH 1232
Query: 449 KGLDLKWLRQQ------IGLVN-------------------------------------- 464
Q +G+ N
Sbjct: 1233 TNDMTNEQDYQGDEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDYNLK 1292
Query: 465 ----------QEPALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQV 514
QEP LF +I ENI +GK+DAT E++ RA K + FI +LP +++T V
Sbjct: 1293 DLRNLFSIVSQEPMLFNMSIYENIKFGKEDATREDVKRACKFAAIDEFIESLPNKYDTNV 1352
Query: 515 GERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRV--MVGRTT 572
G G LSGGQKQRIAI+RA+++ P ILLLDEATS+LD+ SE +++ + + +T
Sbjct: 1353 GPYGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTIVDIKDKADKTI 1412
Query: 573 VVVAHRLSTIRNADVIAVVQ-----GRKIVKTGSHEELISNPNSAYAALVQL 619
+ +AHR+++I+ +D I V G + G+HEEL+S + Y V+L
Sbjct: 1413 ITIAHRIASIKRSDKIVVFNNPDRTGSFVQAHGTHEELLSVQDGVYKKYVKL 1464
|
Length = 1466 |
| >gnl|CDD|236870 PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 195 bits (499), Expect = 5e-53
Identities = 76/216 (35%), Positives = 129/216 (59%), Gaps = 1/216 (0%)
Query: 407 IPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIGLVNQE 466
+PAG+ +ALVG SG+GK+++++ + F P G + ++G ++ LD + R+ + V Q
Sbjct: 373 LPAGQRIALVGPSGAGKTSLLNALLGFL-PYQGSLKINGIELRELDPESWRKHLSWVGQN 431
Query: 467 PALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQK 526
P L T+R+N+L G DA+ E++ +A + + F+ LP+ +T +G++ LS GQ
Sbjct: 432 PQLPHGTLRDNVLLGNPDASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLSVGQA 491
Query: 527 QRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRNAD 586
QR+A++RA+++ +LLLDE T++LDA SE V +AL+ +TT++V H+L + D
Sbjct: 492 QRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAASRRQTTLMVTHQLEDLAQWD 551
Query: 587 VIAVVQGRKIVKTGSHEELISNPNSAYAALVQLQEA 622
I V+Q +IV+ G + EL L QE
Sbjct: 552 QIWVMQDGQIVQQGDYAELSQAGGLFATLLAHRQEE 587
|
Length = 588 |
| >gnl|CDD|234041 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Score = 191 bits (486), Expect = 8e-52
Identities = 123/463 (26%), Positives = 213/463 (46%), Gaps = 29/463 (6%)
Query: 131 RQAAKMRMAYLRSMLNQDISLFDTE-ASTGEVISAITSDIIVVQD----ALSEKVGNFMH 185
R +R+ + Q +L G+++ + +D+ +QD + +
Sbjct: 83 RSLGALRVRVYERLARQ--ALAGRRRLRRGDLLGRLGADVDALQDLYVRVIVPAGVALVV 140
Query: 186 YISR--FLGGFIIGFARVWQISL-VTLSIVPLIALAGGMYAYVTIGLIARVRKSYVKAGE 242
+ + + A + L + + PL++L A + AR+R
Sbjct: 141 GAAAVAAIAVLSVPAALILAAGLLLAGFVAPLVSLRAARAAEQAL---ARLRGELAAQ-- 195
Query: 243 IAEEVIGNVRTVQAFAGEDKAVKVYKEALSNTYKYGRKAGLAKGLGLGSMHCVLFLSWSL 302
+ + + A A+ +EA + R+A A LG L+
Sbjct: 196 -LTDALDGAAELVASGALPAALAQVEEADRELTRAERRAAAATALGAALTLLAAGLAVLG 254
Query: 303 LVWYVSVVVHKHISNGGESFTTMLNVVIAGLSLGQAAPDITAFI----RAKAAAYPIFEM 358
+W V ++G + T+ +V+ L+ +A + A R +AAA I E+
Sbjct: 255 ALWAGGPAV----ADGRLAPVTLAVLVLLPLAAFEAFAALPAAAQQLTRVRAAAERIVEV 310
Query: 359 IERDTMSKASSKTGRKLDKLSGH--IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALV 416
++ S G +E +D+S YP P V D LD+P G+ VA++
Sbjct: 311 LDAAGPVAEGSAP-AAGAVGLGKPTLELRDLSAGYPGAPPV--LDGVSLDLPPGERVAIL 367
Query: 417 GGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIGLVNQEPALFATTIRE 476
G SGSGKST+++ + +PL GE+ LDG + LD +R+++ + Q+ LF TT+RE
Sbjct: 368 GPSGSGKSTLLATLAGLLDPLQGEVTLDGVPVSSLDQDEVRRRVSVCAQDAHLFDTTVRE 427
Query: 477 NILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIV 536
N+ + DAT EE+ A + ++ LP+ +T +GE G +LSGG++QR+A++RA++
Sbjct: 428 NLRLARPDATDEELWAALERVGLADWLRALPDGLDTVLGEGGARLSGGERQRLALARALL 487
Query: 537 KNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRL 579
+ ILLLDE T LDAE+ + + E L + GRT V++ H L
Sbjct: 488 ADAPILLLDEPTEHLDAETADELLEDLLAALSGRTVVLITHHL 530
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Length = 530 |
| >gnl|CDD|182732 PRK10789, PRK10789, putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Score = 188 bits (480), Expect = 1e-50
Identities = 85/222 (38%), Positives = 133/222 (59%), Gaps = 1/222 (0%)
Query: 388 SFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNN 447
F YP D + + G+++ + G +GSGKST++SLI+R ++ G+I
Sbjct: 320 QFTYPQT-DHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIP 378
Query: 448 IKGLDLKWLRQQIGLVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLP 507
+ L L R ++ +V+Q P LF+ T+ NI G+ DAT +EI A+L+ I LP
Sbjct: 379 LTKLQLDSWRSRLAVVSQTPFLFSDTVANNIALGRPDATQQEIEHVARLASVHDDILRLP 438
Query: 508 ERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVM 567
+ ++T+VGERG+ LSGGQKQRI+I+RA++ N IL+LD+A SA+D +E+ + L +
Sbjct: 439 QGYDTEVGERGVMLSGGQKQRISIARALLLNAEILILDDALSAVDGRTEHQILHNLRQWG 498
Query: 568 VGRTTVVVAHRLSTIRNADVIAVVQGRKIVKTGSHEELISNP 609
GRT ++ AHRLS + A I V+Q I + G+H++L
Sbjct: 499 EGRTVIISAHRLSALTEASEILVMQHGHIAQRGNHDQLAQQS 540
|
Length = 569 |
| >gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Score = 182 bits (463), Expect = 1e-47
Identities = 98/250 (39%), Positives = 153/250 (61%), Gaps = 5/250 (2%)
Query: 369 SKTGRKLDKLSGHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVIS 428
K +L+ L+G I DVS+ Y + I L I +VG SGSGKST+
Sbjct: 461 KKKRTELNNLNGDIVINDVSYSYGYGSN--ILSDISLTIKMNSKTTIVGMSGSGKSTLAK 518
Query: 429 LIERFYEPLSGEILLDGNNIKGLDLKWLRQQIGLVNQEPALFATTIRENILYG-KDDATM 487
L+ F++ SGEILL+G ++K +D LRQ I + QEP +F+ +I EN+L G K++ +
Sbjct: 519 LLVGFFQARSGEILLNGFSLKDIDRHTLRQFINYLPQEPYIFSGSILENLLLGAKENVSQ 578
Query: 488 EEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEA 547
+EI A +++E I N+P ++T++ E G +SGGQKQRIA++RA++ + +L+LDE+
Sbjct: 579 DEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQRIALARALLTDSKVLILDES 638
Query: 548 TSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRNADVIAVVQGRKIVKTGSHEELIS 607
TS LD +E + L + +T + VAHRLS + +D I V+ KI++ GSH+EL+
Sbjct: 639 TSNLDTITEKKIVNNLLN-LQDKTIIFVAHRLSVAKQSDKIIVLDHGKIIEQGSHDELL- 696
Query: 608 NPNSAYAALV 617
+ N YA+L+
Sbjct: 697 DRNGFYASLI 706
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair, Transport and binding proteins, Other]. Length = 708 |
| >gnl|CDD|224058 COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 168 bits (429), Expect = 4e-46
Identities = 83/240 (34%), Positives = 136/240 (56%), Gaps = 14/240 (5%)
Query: 382 IEFKDVSFCYPSR--PDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSG 439
IE ++VS + V D L+IP G+I ++G SG+GKST++ LI P SG
Sbjct: 2 IELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSG 61
Query: 440 EILLDGNNIKGLD---LKWLRQQIGLVNQEPALFAT-TIRENILYGKDDATMEEITRAAK 495
+ +DG ++ L L+ LRQ+IG++ Q L ++ T+ EN+ + + A + + +
Sbjct: 62 SVFVDGQDLTALSEAELRQLRQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQR 121
Query: 496 LSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAES 555
++E + + L ++ QLSGGQKQR+AI+RA+ NP ILL DEATSALD E+
Sbjct: 122 VAELLELV-GLSDK----ADRYPAQLSGGQKQRVAIARALANNPKILLCDEATSALDPET 176
Query: 556 ENSVQEALDRV--MVGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELISNPNSA 612
S+ E L + +G T V++ H + ++ D +AV+ ++V+ G+ E+ +NP A
Sbjct: 177 TQSILELLKDINRELGLTIVLITHEMEVVKRICDRVAVLDQGRLVEEGTVSEVFANPKHA 236
|
Length = 339 |
| >gnl|CDD|213227 cd03260, ABC_PstB_phosphate_transporter, ATP-binding cassette domain of the phosphate transport system | Back alignment and domain information |
|---|
Score = 164 bits (417), Expect = 8e-46
Identities = 83/238 (34%), Positives = 128/238 (53%), Gaps = 25/238 (10%)
Query: 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYE-----P 436
IE +D++ Y D LDIP G+I AL+G SG GKST++ L+ R + P
Sbjct: 1 IELRDLNVYYG---DKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAP 57
Query: 437 LSGEILLDGNNIKGLDLK--WLRQQIGLVNQEPALFATTIRENILYG------KDDATME 488
GE+LLDG +I LD+ LR+++G+V Q+P F +I +N+ YG K ++
Sbjct: 58 DEGEVLLDGKDIYDLDVDVLELRRRVGMVFQKPNPFPGSIYDNVAYGLRLHGIKLKEELD 117
Query: 489 EITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEAT 548
E A L +A L + + ++ G LSGGQ+QR+ ++RA+ P +LLLDE T
Sbjct: 118 ERVEEA-LRKA-----ALWDEVKDRLHALG--LSGGQQQRLCLARALANEPEVLLLDEPT 169
Query: 549 SALDAESENSVQEALDRVMVGRTTVVVAHRLS-TIRNADVIAVVQGRKIVKTGSHEEL 605
SALD S ++E + + T V+V H + R AD A + ++V+ G E++
Sbjct: 170 SALDPISTAKIEELIAELKKEYTIVIVTHNMQQAARVADRTAFLLNGRLVEFGPTEQI 227
|
Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). Length = 227 |
| >gnl|CDD|233209 TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Score = 171 bits (436), Expect = 3e-44
Identities = 113/413 (27%), Positives = 188/413 (45%), Gaps = 46/413 (11%)
Query: 685 IKLYSMVRPDWTYGVCG---TICAIIAGAQMPLFALGVSQALVAYYMDWDTTQREVKKIT 741
+L + DW + + + + +P + V L D +
Sbjct: 150 FRLLGLSGRDWPWLISAFVFLTLSSLGEMFIPFYTGRVIDTLGG-----DKGPPALASAI 204
Query: 742 ILFCCAAVITVIVHAIEHLSFGIMGERLTLRVREKMFSAILSNEIGWFDEMDNSSSILAS 801
C ++ + + + SF R+ LR+RE +F ++L ++G+FDE N + L S
Sbjct: 205 FFMCLLSIASSVSAGLRGGSFNYTMARINLRIREDLFRSLLRQDLGFFDE--NKTGELTS 262
Query: 802 RLESDATLLRTIVVDRSTILIQNFGLVTASFVIAFILNWRITLVVVATYPLIISGHISEK 861
RL SD + + +L++N ++ L+ R+T+V + PL+ ++EK
Sbjct: 263 RLSSDTQTMSRSLSLNVNVLLRNLVMLLGLLGFMLWLSPRLTMVTLINLPLVF---LAEK 319
Query: 862 LFFQGYGGNLSK----AYLKANMLAAEAVSNIRTVAAFCSEDKVLELYSRELVEPSKRSF 917
+F + Y LS+ A KAN +A EA+S +RTV +F +E+ + +E +E + +
Sbjct: 320 VFGKRYQ-LLSEELQEAVAKANQVAEEALSGMRTVRSFAAEEGEASRF-KEALEETLQLN 377
Query: 918 IRGQIAGIFY----GISQFFIFSSYGLALWYGS--VLMGK----ELASFKSVMKSFMVLI 967
R +A Y + I L L+YG VL GK L SF +
Sbjct: 378 KRKALAYAGYLWTTSVLGMLIQV---LVLYYGGQLVLTGKVSSGNLVSF----------L 424
Query: 968 VTALAMGETL----ALVPDLLKGNQMAASVFEVLDRKTQVIGDIGEELTNVEGTIELRGV 1023
+ +GE + + +++ + VFE LDRK + N+EG IE + V
Sbjct: 425 LYQEQLGEAVRVLSYVYSGMMQAVGASEKVFEYLDRKPNIPLTGTLAPLNLEGLIEFQDV 484
Query: 1024 HFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGK 1076
FSYP+RP+V + K + G+ +ALVG SGSGKSTV +L+ Y PT G+
Sbjct: 485 SFSYPNRPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQ 537
|
[Transport and binding proteins, Other]. Length = 711 |
| >gnl|CDD|213226 cd03259, ABC_Carb_Solutes_like, ATP-binding cassette domain of the carbohydrate and solute transporters-like | Back alignment and domain information |
|---|
Score = 159 bits (404), Expect = 3e-44
Identities = 82/225 (36%), Positives = 124/225 (55%), Gaps = 18/225 (8%)
Query: 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEI 441
+E K +S Y S V D L + G+ +AL+G SG GK+T++ LI P SGEI
Sbjct: 1 LELKGLSKTYGS---VRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEI 57
Query: 442 LLDGNNIKGLDLKWLRQQIGLVNQEPALFAT-TIRENILYGKDDATM--EEITRAAKLSE 498
L+DG ++ G+ + R+ IG+V Q+ ALF T+ ENI +G + EI +
Sbjct: 58 LIDGRDVTGVPPE--RRNIGMVFQDYALFPHLTVAENIAFGLKLRGVPKAEIRARVRELL 115
Query: 499 AMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENS 558
+ + L R+ + LSGGQ+QR+A++RA+ + PS+LLLDE SALDA+
Sbjct: 116 ELVGLEGLLNRYPHE-------LSGGQQQRVALARALAREPSLLLLDEPLSALDAKLREE 168
Query: 559 VQEALDRVM--VGRTTVVVAHRLS-TIRNADVIAVVQGRKIVKTG 600
++E L + +G TT+ V H + AD IAV+ +IV+ G
Sbjct: 169 LREELKELQRELGITTIYVTHDQEEALALADRIAVMNEGRIVQVG 213
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 213 |
| >gnl|CDD|213225 cd03258, ABC_MetN_methionine_transporter, ATP-binding cassette domain of methionine transporter | Back alignment and domain information |
|---|
Score = 157 bits (399), Expect = 2e-43
Identities = 78/236 (33%), Positives = 132/236 (55%), Gaps = 13/236 (5%)
Query: 382 IEFKDVSFCYPSRP-DVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGE 440
IE K+VS + V L +P G+I ++G SG+GKST+I I P SG
Sbjct: 2 IELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGS 61
Query: 441 ILLDGNNIKGL---DLKWLRQQIGLVNQEPALFAT-TIRENILYGKDDATMEEITRAAKL 496
+L+DG ++ L +L+ R++IG++ Q L ++ T+ EN+ + A + + ++
Sbjct: 62 VLVDGTDLTLLSGKELRKARRRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIEERV 121
Query: 497 SEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESE 556
E + + L ++ + QLSGGQKQR+ I+RA+ NP +LL DEATSALD E+
Sbjct: 122 LELLELV-GLEDKADAYPA----QLSGGQKQRVGIARALANNPKVLLCDEATSALDPETT 176
Query: 557 NSVQEALDRV--MVGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELISNP 609
S+ L + +G T V++ H + ++ D +AV++ ++V+ G+ EE+ +NP
Sbjct: 177 QSILALLRDINRELGLTIVLITHEMEVVKRICDRVAVMEKGEVVEEGTVEEVFANP 232
|
MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 233 |
| >gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 166 bits (422), Expect = 3e-43
Identities = 87/373 (23%), Positives = 171/373 (45%), Gaps = 20/373 (5%)
Query: 714 LFALGVSQALVAYYM-----DWDTTQREVKKITILFCCAAVITVIVHAIEHLSFGIMGER 768
L + L+ + E+ ++ +L A++ ++ A++ +G++
Sbjct: 23 LLLSALLSLLLPLLIGRIIDALLADLGELLELLLLLLLLALLGGVLRALQSYLGSRLGQK 82
Query: 769 LTLRVREKMFSAILSNEIGWFDEMDNSSSILASRLESDATLLRTIVVDRSTILIQNFGLV 828
+ +R +F +L + +FD S L SRL +D + +V ++ + L+
Sbjct: 83 IVADLRRDLFEKLLRLPLSFFD--KAKSGDLISRLTNDVEAVSNLVSTVLVLVFTSILLL 140
Query: 829 TASFVIAFILNWRITLVVVATYPLIISGHISEKLFFQGYGGNLSKAYLKANML----AAE 884
S V+ F L+WR+ L+++ PL+ LS+ +A E
Sbjct: 141 IGSLVLLFSLSWRLALILLLILPLLALVLS----LLARKSRKLSRRVREALGELNARLLE 196
Query: 885 AVSNIRTVAAFCSEDKVLELYSRELVEPSKRSFIRGQIAGIFYGISQFFIFSSYGLALWY 944
++S IR + AF +ED+ L+ + E + + ++ + + L L
Sbjct: 197 SLSGIRVIKAFGAEDRELKRFEEANEELRRANLRASRLEALLAPLMLLLSSLGTVLVLAL 256
Query: 945 GSVLMGKELASFKSVMKSFMVLIVTAL-AMGETLALVPDLLKGNQMAASVFEVLDRKTQV 1003
G L+ + ++ +F++ ++ L + + +V L + + A +FE+LD + +V
Sbjct: 257 GGFLVLSGSLTVGALA-AFILYLLRLLTPILQLGEVVSLLQRASAAAERLFELLDEEPEV 315
Query: 1004 IGDIGEELTNVEGTIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVL 1063
D + L + G+IE V FSYP + + KD + + G+ +A+VG SGSGKST++
Sbjct: 316 E-DPPDPLKDTIGSIEFENVSFSYPGKK--PVLKDISFSIEPGEKVAIVGPSGSGKSTLI 372
Query: 1064 SLILRFYDPTAGK 1076
L+LR YDPT+G+
Sbjct: 373 KLLLRLYDPTSGE 385
|
Length = 567 |
| >gnl|CDD|213192 cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 156 bits (396), Expect = 3e-43
Identities = 77/219 (35%), Positives = 118/219 (53%), Gaps = 15/219 (6%)
Query: 383 EFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEIL 442
E K++SF YP D L I G+ V +VG +GSGKST++ L+ P SGE+L
Sbjct: 1 ELKNLSFSYPDG-ARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVL 59
Query: 443 LDGNNIKGLDLKWLRQQIGLVNQEPA--LFATTIRENILYGKDDATMEEITRAAKLSEAM 500
+DG ++ L LK LR+++GLV Q P F T+ E + +G ++ + E ++ EA+
Sbjct: 60 VDGKDLTKLSLKELRRKVGLVFQNPDDQFFGPTVEEEVAFGLENLGLPEEEIEERVEEAL 119
Query: 501 SF--ISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENS 558
+ L +R LSGGQKQR+AI+ + +P ILLLDE T+ LD
Sbjct: 120 ELVGLEGLRDR-SPF------TLSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRRE 172
Query: 559 VQEALDRVM-VGRTTVVVAHRLSTIRN-ADVIAVV-QGR 594
+ E L ++ G+T ++V H L + AD + V+ G+
Sbjct: 173 LLELLKKLKAEGKTIIIVTHDLDLLLELADRVIVLEDGK 211
|
Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 211 |
| >gnl|CDD|213214 cd03247, ABCC_cytochrome_bd, ATP-binding cassette domain of CydCD, subfamily C | Back alignment and domain information |
|---|
Score = 153 bits (388), Expect = 1e-42
Identities = 65/219 (29%), Positives = 107/219 (48%), Gaps = 41/219 (18%)
Query: 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEI 441
+ +VSF YP + + L++ G+ +AL+G SGSGKST++ L+ +P GEI
Sbjct: 1 LSINNVSFSYPEQEQQ-VLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEI 59
Query: 442 LLDGNNIKGLDLKWLRQQIGLVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMS 501
LDG + L+ K L I ++NQ P LF TT+R N+
Sbjct: 60 TLDGVPVSDLE-KALSSLISVLNQRPYLFDTTLRNNL----------------------- 95
Query: 502 FISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQE 561
G + SGG++QR+A++R ++++ I+LLDE T LD +E +
Sbjct: 96 ----------------GRRFSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLS 139
Query: 562 ALDRVMVGRTTVVVAHRLSTIRNADVIAVVQGRKIVKTG 600
+ V+ +T + + H L+ I + D I ++ KI+ G
Sbjct: 140 LIFEVLKDKTLIWITHHLTGIEHMDKILFLENGKIIMQG 178
|
The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. Length = 178 |
| >gnl|CDD|226361 COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 158 bits (401), Expect = 2e-42
Identities = 86/239 (35%), Positives = 136/239 (56%), Gaps = 15/239 (6%)
Query: 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEI 441
+E ++VS + D D LDI G+ V L+G SG GK+T++ +I F +P SGEI
Sbjct: 6 LEIRNVSKSFG---DFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEI 62
Query: 442 LLDGNNIKGLDLKWLRQQIGLVNQEPALFAT-TIRENILYG-KDDATMEEITRAAKLSEA 499
LLDG +I D+ ++ IG+V Q ALF T+ EN+ +G K +++ A++ EA
Sbjct: 63 LLDGEDIT--DVPPEKRPIGMVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEA 120
Query: 500 MSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSV 559
+ + E F + + QLSGGQ+QR+A++RA+V P +LLLDE SALDA+ +
Sbjct: 121 LELV--GLEGFADR---KPHQLSGGQQQRVALARALVPEPKVLLLDEPLSALDAKLREQM 175
Query: 560 QEALDRV--MVGRTTVVVAH-RLSTIRNADVIAVVQGRKIVKTGSHEELISNPNSAYAA 615
++ L + +G T V V H + + +D IAV+ +I + G+ EE+ P + + A
Sbjct: 176 RKELKELQRELGITFVYVTHDQEEALAMSDRIAVMNDGRIEQVGTPEEIYERPATRFVA 234
|
Length = 352 |
| >gnl|CDD|213213 cd03246, ABCC_Protease_Secretion, ATP-binding cassette domain of PrtD, subfamily C | Back alignment and domain information |
|---|
Score = 150 bits (382), Expect = 7e-42
Identities = 69/216 (31%), Positives = 105/216 (48%), Gaps = 44/216 (20%)
Query: 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEI 441
+E ++VSF YP + + I G+ +A++G SGSGKST+ LI P SG +
Sbjct: 1 LEVENVSFRYPGA-EPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRV 59
Query: 442 LLDGNNIKGLDLKWLRQQIGLVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMS 501
LDG +I D L +G + Q+ LF+ +I ENIL
Sbjct: 60 RLDGADISQWDPNELGDHVGYLPQDDELFSGSIAENIL---------------------- 97
Query: 502 FISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQE 561
SGGQ+QR+ ++RA+ NP IL+LDE S LD E E ++ +
Sbjct: 98 --------------------SGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQ 137
Query: 562 ALDRV-MVGRTTVVVAHRLSTIRNADVIAVVQGRKI 596
A+ + G T +V+AHR T+ +AD I V++ ++
Sbjct: 138 AIAALKAAGATRIVIAHRPETLASADRILVLEDGRV 173
|
This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA. Length = 173 |
| >gnl|CDD|213228 cd03261, ABC_Org_Solvent_Resistant, ATP-binding cassette transport system involved in resistant to organic solvents | Back alignment and domain information |
|---|
Score = 152 bits (386), Expect = 1e-41
Identities = 84/250 (33%), Positives = 130/250 (52%), Gaps = 42/250 (16%)
Query: 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEI 441
IE + ++ + R + LD+ G+I+A++G SGSGKST++ LI P SGE+
Sbjct: 1 IELRGLTKSFGGRT---VLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEV 57
Query: 442 LLDGNNIKGL---DLKWLRQQIGLVNQEPALF-ATTIRENI---LYGKDDATMEEITRAA 494
L+DG +I GL +L LR+++G++ Q ALF + T+ EN+ L + EEI
Sbjct: 58 LIDGEDISGLSEAELYRLRRRMGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIV 117
Query: 495 KLSEAMSFISNLPERFETQVGERGI------QLSGGQKQRIAISRAIVKNPSILLLDEAT 548
VG RG +LSGG K+R+A++RA+ +P +LL DE T
Sbjct: 118 LEKLEA-------------VGLRGAEDLYPAELSGGMKKRVALARALALDPELLLYDEPT 164
Query: 549 SALD-------AESENSVQEALDRVMVGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTG 600
+ LD + S+++ L G T+++V H L T AD IAV+ KIV G
Sbjct: 165 AGLDPIASGVIDDLIRSLKKEL-----GLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEG 219
Query: 601 SHEELISNPN 610
+ EEL ++ +
Sbjct: 220 TPEELRASDD 229
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|226969 COG4618, ArpD, ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Score = 160 bits (407), Expect = 3e-41
Identities = 80/230 (34%), Positives = 133/230 (57%), Gaps = 2/230 (0%)
Query: 380 GHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSG 439
G + + ++ P + + + AG+ + ++G SGSGKST+ L+ + P SG
Sbjct: 333 GALSVERLTAAPPGQKKPILKG-ISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSG 391
Query: 440 EILLDGNNIKGLDLKWLRQQIGLVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEA 499
+ LDG +++ D + L + IG + Q+ LF TI ENI ++A E++ AA+L+
Sbjct: 392 SVRLDGADLRQWDREQLGRHIGYLPQDVELFDGTIAENIARFGEEADPEKVIEAARLAGV 451
Query: 500 MSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSV 559
I LP+ ++T++GE G LSGGQ+QRIA++RA+ +P +++LDE S LD+E E ++
Sbjct: 452 HELILRLPQGYDTRIGEGGATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAAL 511
Query: 560 QEALDRVMV-GRTTVVVAHRLSTIRNADVIAVVQGRKIVKTGSHEELISN 608
A+ G T VV+AHR S + + D I V+Q +I G EE+++
Sbjct: 512 AAAILAAKARGGTVVVIAHRPSALASVDKILVLQDGRIAAFGPREEVLAK 561
|
Length = 580 |
| >gnl|CDD|224050 COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 153 bits (389), Expect = 4e-41
Identities = 87/238 (36%), Positives = 136/238 (57%), Gaps = 22/238 (9%)
Query: 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEI 441
IEF++VS Y ++ D L I G+ + L+G SGSGK+T + +I R EP SGEI
Sbjct: 2 IEFENVSKRYGNK---KAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEI 58
Query: 442 LLDGNNIKGLDLKWLRQQIGLVNQEPALFA-TTIRENI-----LYGKDDATMEEITRAAK 495
L+DG +I LD LR++IG V Q+ LF T+ ENI L G D +++ RA +
Sbjct: 59 LIDGEDISDLDPVELRRKIGYVIQQIGLFPHLTVAENIATVPKLLGWDKERIKK--RADE 116
Query: 496 LSEAMSFISNLPERFETQVGER-GIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAE 554
L + + L + +R +LSGGQ+QR+ ++RA+ +P ILL+DE ALD
Sbjct: 117 LLDLV----GLDPS---EYADRYPHELSGGQQQRVGVARALAADPPILLMDEPFGALDPI 169
Query: 555 SENSVQEALDRVM--VGRTTVVVAHRLS-TIRNADVIAVVQGRKIVKTGSHEELISNP 609
+ +QE + + +G+T V V H + ++ AD IAV+ +IV+ + +E+++NP
Sbjct: 170 TRKQLQEEIKELQKELGKTIVFVTHDIDEALKLADRIAVMDAGEIVQYDTPDEILANP 227
|
Length = 309 |
| >gnl|CDD|213262 cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cassette domain of the osmoprotectant transporter | Back alignment and domain information |
|---|
Score = 150 bits (382), Expect = 4e-41
Identities = 82/244 (33%), Positives = 134/244 (54%), Gaps = 21/244 (8%)
Query: 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEI 441
IEF++V+ Y + L+I G+ + L+G SGSGK+T + +I R EP SGEI
Sbjct: 1 IEFENVTKRYGGGK--KAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEI 58
Query: 442 LLDGNNIKGLDLKWLRQQIGLVNQEPALFA-TTIRENI-----LYGKDDATMEEITRAAK 495
+DG +I+ D LR++IG V Q+ LF T+ ENI L + E RA +
Sbjct: 59 FIDGEDIREQDPVELRRKIGYVIQQIGLFPHMTVEENIALVPKLLKWPKEKIRE--RADE 116
Query: 496 LSEAMSF-ISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAE 554
L + + +R+ +LSGGQ+QR+ ++RA+ +P +LL+DE ALD
Sbjct: 117 LLALVGLDPAEFADRYPH-------ELSGGQQQRVGVARALAADPPLLLMDEPFGALDPI 169
Query: 555 SENSVQEALDRV--MVGRTTVVVAHRL-STIRNADVIAVVQGRKIVKTGSHEELISNPNS 611
+ + +QE R+ +G+T V V H + R AD IA+++ +IV+ G+ +E++ +P +
Sbjct: 170 TRDQLQEEFKRLQQELGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQVGTPDEILRSPAN 229
Query: 612 AYAA 615
+ A
Sbjct: 230 DFVA 233
|
OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 242 |
| >gnl|CDD|224047 COG1122, CbiO, ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 150 bits (380), Expect = 8e-41
Identities = 82/244 (33%), Positives = 125/244 (51%), Gaps = 27/244 (11%)
Query: 379 SGHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLS 438
IE +++SF YP A L+I G+ V L+G +GSGKST++ L+ +P S
Sbjct: 1 LRMIEAENLSFRYP--GRKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTS 58
Query: 439 GEILLDGNNIK-GLDLKWLRQQIGLVNQEPA--LFATTIRENILYGK-----DDATMEEI 490
GE+L+DG + L LRQ++GLV Q P LF T+ + + +G +EE
Sbjct: 59 GEVLVDGLDTSSEKSLLELRQKVGLVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEE- 117
Query: 491 TRAAKLSEAMSFISNLPER--FETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEAT 548
R A+ E + + L +R F LSGGQKQR+AI+ + P ILLLDE T
Sbjct: 118 -RVAEALELVG-LEELLDRPPFN---------LSGGQKQRVAIAGVLAMGPEILLLDEPT 166
Query: 549 SALDAESENSVQEALDRVM--VGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEEL 605
+ LD + + E L ++ G+T ++V H L + AD + V+ KI+ G E+
Sbjct: 167 AGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLELVLEYADRVVVLDDGKILADGDPAEI 226
Query: 606 ISNP 609
++
Sbjct: 227 FNDA 230
|
Length = 235 |
| >gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding protein-dependent transport systems | Back alignment and domain information |
|---|
Score = 147 bits (374), Expect = 9e-41
Identities = 80/220 (36%), Positives = 113/220 (51%), Gaps = 49/220 (22%)
Query: 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEI 441
+E K+VS Y + + L+I AG+IVAL+G SGSGKST++ I EP SG I
Sbjct: 1 LELKNVSKRYG---QKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSI 57
Query: 442 LLDGNNIKGLD--LKWLRQQIGLVNQEPALFAT-TIRENILYGKDDATMEEITRAAKLSE 498
L+DG ++ L+ L LR++IG+V Q+ ALF T+ ENI G
Sbjct: 58 LIDGEDLTDLEDELPPLRRRIGMVFQDFALFPHLTVLENIALG----------------- 100
Query: 499 AMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENS 558
LSGGQ+QR+A++RA+ +P +LLLDE TSALD +
Sbjct: 101 ----------------------LSGGQQQRVALARALAMDPDVLLLDEPTSALDPITRRE 138
Query: 559 VQEALDRV--MVGRTTVVVAHRLS-TIRNADVIAVV-QGR 594
V+ L + +G T V+V H L R AD + V+ G+
Sbjct: 139 VRALLKSLQAQLGITVVLVTHDLDEAARLADRVVVLRDGK 178
|
This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 178 |
| >gnl|CDD|224052 COG1127, Ttg2A, ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 150 bits (382), Expect = 1e-40
Identities = 88/243 (36%), Positives = 139/243 (57%), Gaps = 27/243 (11%)
Query: 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEI 441
IE + V+ S D I D LD+P G+I+A++GGSGSGKST++ LI P GEI
Sbjct: 9 IEVRGVTK---SFGDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEI 65
Query: 442 LLDGNNIKGL---DLKWLRQQIGLVNQEPALF-ATTIRENILYGKDDATMEEITRAAKLS 497
L+DG +I L +L +R+++G++ Q+ ALF + T+ EN+ + + E T KL
Sbjct: 66 LIDGEDIPQLSEEELYEIRKRMGVLFQQGALFSSLTVFENVAF-----PLREHT---KLP 117
Query: 498 EAMSFISNLPERFETQVGERGI-------QLSGGQKQRIAISRAIVKNPSILLLDEATSA 550
E++ I L VG RG +LSGG ++R+A++RAI +P +L LDE TS
Sbjct: 118 ESL--IRELVLMKLELVGLRGAAADLYPSELSGGMRKRVALARAIALDPELLFLDEPTSG 175
Query: 551 LDAESENSVQEALDRVM--VGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELIS 607
LD S + E + + +G T ++V H L ++ AD +AV+ K++ G+ EEL++
Sbjct: 176 LDPISAGVIDELIRELNDALGLTVIMVTHDLDSLLTIADRVAVLADGKVIAEGTPEELLA 235
Query: 608 NPN 610
+ +
Sbjct: 236 SDD 238
|
Length = 263 |
| >gnl|CDD|200134 TIGR01842, type_I_sec_PrtD, type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Score = 157 bits (400), Expect = 1e-40
Identities = 83/235 (35%), Positives = 132/235 (56%), Gaps = 2/235 (0%)
Query: 374 KLDKLSGHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERF 433
L + GH+ ++V+ P + AG+ +A++G SGSGKST+ LI
Sbjct: 309 PLPEPEGHLSVENVTIVPPG-GKKPTLRGISFSLQAGEALAIIGPSGSGKSTLARLIVGI 367
Query: 434 YEPLSGEILLDGNNIKGLDLKWLRQQIGLVNQEPALFATTIRENILYGKDDATMEEITRA 493
+ P SG + LDG ++K D + + IG + Q+ LF T+ ENI ++A E+I A
Sbjct: 368 WPPTSGSVRLDGADLKQWDRETFGKHIGYLPQDVELFPGTVAENIARFGENADPEKIIEA 427
Query: 494 AKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDA 553
AKL+ I LP+ ++T +G G LSGGQ+QRIA++RA+ +P +++LDE S LD
Sbjct: 428 AKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALARALYGDPKLVVLDEPNSNLDE 487
Query: 554 ESENSVQEALDRVMV-GRTTVVVAHRLSTIRNADVIAVVQGRKIVKTGSHEELIS 607
E E ++ A+ + G T VV+ HR S + D I V+Q +I + G +E+++
Sbjct: 488 EGEQALANAIKALKARGITVVVITHRPSLLGCVDKILVLQDGRIARFGERDEVLA 542
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 544 |
| >gnl|CDD|224045 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 148 bits (377), Expect = 4e-40
Identities = 81/244 (33%), Positives = 125/244 (51%), Gaps = 30/244 (12%)
Query: 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEI 441
+E +++SF Y +P I D IP G+I ++G +GSGKST++ + +P SGE+
Sbjct: 3 LEVENLSFGYGGKP---ILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEV 59
Query: 442 LLDGNNIKGLDLKWLRQQIGLVNQEP-ALFATTIRENILYGK----------DDATMEEI 490
LLDG +I L K L +++ V Q P A F T+ E +L G+ E +
Sbjct: 60 LLDGKDIASLSPKELAKKLAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIV 119
Query: 491 TRAAKLSEAMSFISNLPERFETQVGERGI-QLSGGQKQRIAISRAIVKNPSILLLDEATS 549
A +L +R + +LSGG++QR+ I+RA+ + ILLLDE TS
Sbjct: 120 EEALELLGLEHLA------------DRPVDELSGGERQRVLIARALAQETPILLLDEPTS 167
Query: 550 ALDAESENSVQEALDRVMV--GRTTVVVAHRLS-TIRNADVIAVVQGRKIVKTGSHEELI 606
LD + V E L + G T V+V H L+ R AD + +++ KIV G+ EE++
Sbjct: 168 HLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNLAARYADHLILLKDGKIVAQGTPEEVL 227
Query: 607 SNPN 610
+ N
Sbjct: 228 TEEN 231
|
Length = 258 |
| >gnl|CDD|213217 cd03250, ABCC_MRP_domain1, ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C | Back alignment and domain information |
|---|
Score = 146 bits (370), Expect = 8e-40
Identities = 78/221 (35%), Positives = 120/221 (54%), Gaps = 28/221 (12%)
Query: 382 IEFKDVSFCYPSRPDVA--IFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSG 439
I +D SF + S L++P G++VA+VG GSGKS+++S + E LSG
Sbjct: 1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSG 60
Query: 440 EILLDGNNIKGLDLKWLRQQIGLVNQEPALFATTIRENILYGK--DDATMEEITRAAKLS 497
+ + G+ I V+QEP + TIRENIL+GK D+ E++ +A L
Sbjct: 61 SVSVPGS-------------IAYVSQEPWIQNGTIRENILFGKPFDEERYEKVIKACALE 107
Query: 498 EAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAES-- 555
+ LP+ T++GE+GI LSGGQKQRI+++RA+ + I LLD+ SA+DA
Sbjct: 108 PD---LEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDADIYLLDDPLSAVDAHVGR 164
Query: 556 ---ENSVQEALDRVMVGRTTVVVAHRLSTIRNADVIAVVQG 593
EN + L + +T ++V H+L + +AD I V+
Sbjct: 165 HIFENCILGLL---LNNKTRILVTHQLQLLPHADQIVVLDN 202
|
This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 204 |
| >gnl|CDD|188099 TIGR00972, 3a0107s01c2, phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 145 bits (368), Expect = 4e-39
Identities = 78/243 (32%), Positives = 134/243 (55%), Gaps = 23/243 (9%)
Query: 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYE----- 435
IE ++++ Y + A+ + LDIP ++ AL+G SG GKST++ + R +
Sbjct: 1 AIEIENLNLFYGEK--EALKN-INLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGV 57
Query: 436 PLSGEILLDGNNI--KGLDLKWLRQQIGLVNQEPALFATTIRENILYG------KDDATM 487
+ G++L DG +I K +D+ LR+++G+V Q+P F +I +NI YG KD +
Sbjct: 58 RIEGKVLFDGQDIYDKKIDVVELRRRVGMVFQKPNPFPMSIYDNIAYGPRLHGIKDKKEL 117
Query: 488 EEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEA 547
+EI + L +A L + + ++ + + LSGGQ+QR+ I+RA+ P +LLLDE
Sbjct: 118 DEIVEES-LKKA-----ALWDEVKDRLHDSALGLSGGQQQRLCIARALAVEPEVLLLDEP 171
Query: 548 TSALDAESENSVQEALDRVMVGRTTVVVAHRLS-TIRNADVIAVVQGRKIVKTGSHEELI 606
TSALD + ++E + + T V+V H + R +D A ++V+ G E++
Sbjct: 172 TSALDPIATGKIEELIQELKKKYTIVIVTHNMQQAARISDRTAFFYDGELVEYGPTEQIF 231
Query: 607 SNP 609
+NP
Sbjct: 232 TNP 234
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters [Transport and binding proteins, Anions]. Length = 247 |
| >gnl|CDD|224051 COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 144 bits (366), Expect = 9e-39
Identities = 84/246 (34%), Positives = 128/246 (52%), Gaps = 35/246 (14%)
Query: 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEI 441
IE K++S + D + L + G++V ++G SGSGKST++ + EP SG I
Sbjct: 3 IEIKNLSKSFG---DKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSI 59
Query: 442 LLDGNNIKG-LDLKWLRQQIGLVNQEPALFA-TTIRENILYG--------KDDATMEEIT 491
+DG ++ D+ LR+++G+V Q+ LF T+ EN+ K +A E
Sbjct: 60 TVDGEDVGDKKDILKLRRKVGMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEA--RE-- 115
Query: 492 RAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSAL 551
+A +L E + L ++ + QLSGGQ+QR+AI+RA+ +P ++L DE TSAL
Sbjct: 116 KALELLEKV----GLADKADAYPA----QLSGGQQQRVAIARALAMDPKVMLFDEPTSAL 167
Query: 552 DAESENSVQEALDRVMV-----GRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEEL 605
D E V E LD VM G T ++V H + R AD + + KI++ G EE
Sbjct: 168 DPE---LVGEVLD-VMKDLAEEGMTMIIVTHEMGFAREVADRVIFMDQGKIIEEGPPEEF 223
Query: 606 ISNPNS 611
NP S
Sbjct: 224 FDNPKS 229
|
Length = 240 |
| >gnl|CDD|213261 cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system | Back alignment and domain information |
|---|
Score = 145 bits (367), Expect = 1e-38
Identities = 77/225 (34%), Positives = 125/225 (55%), Gaps = 25/225 (11%)
Query: 405 LDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQ----QI 460
LD+ G+I ++G SGSGKST++ I R EP SG++L+DG +I + K LR+ +I
Sbjct: 45 LDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRKKI 104
Query: 461 GLVNQEPALFA-TTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGI 519
+V Q AL T+ EN+ +G + + R + +EA+ VG G
Sbjct: 105 SMVFQSFALLPHRTVLENVAFGLEVQGVPRAEREERAAEALE-----------LVGLEGW 153
Query: 520 ------QLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRV--MVGRT 571
+LSGG +QR+ ++RA+ +P ILL+DEA SALD +Q+ L R+ + +T
Sbjct: 154 EHKYPDELSGGMQQRVGLARALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAELQKT 213
Query: 572 TVVVAHRLS-TIRNADVIAVVQGRKIVKTGSHEELISNPNSAYAA 615
V + H L +R D IA+++ ++V+ G+ EE+++NP + Y
Sbjct: 214 IVFITHDLDEALRLGDRIAIMKDGRLVQVGTPEEILTNPANDYVR 258
|
This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 269 |
| >gnl|CDD|213260 cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of the nitrate and sulfonate transporters | Back alignment and domain information |
|---|
Score = 142 bits (360), Expect = 2e-38
Identities = 74/231 (32%), Positives = 113/231 (48%), Gaps = 29/231 (12%)
Query: 382 IEFKDVSFCYPS-RPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGE 440
+E ++VS Y V + L + G+ VALVG SG GKST++ +I P SGE
Sbjct: 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGE 60
Query: 441 ILLDGNNIKGLDLKWLRQQIGLVNQEPALFA-TTIRENILYGKDDATMEEITRAAKLSEA 499
+L+DG + G G V Q+ AL T+ +N+ G ++ + +A A
Sbjct: 61 VLVDGEPVTGP-----GPDRGYVFQQDALLPWLTVLDNVALG---LELQGVPKAEARERA 112
Query: 500 MSFISNLPERFETQVGERGI------QLSGGQKQRIAISRAIVKNPSILLLDEATSALDA 553
+ VG G QLSGG +QR+A++RA+ +P +LLLDE SALDA
Sbjct: 113 EELLE--------LVGLSGFENAYPHQLSGGMRQRVALARALAVDPDVLLLDEPFSALDA 164
Query: 554 ESENSVQEALDRVMV--GRTTVVVAHRLS-TIRNADVIAVVQGR--KIVKT 599
+ +QE L + G+T ++V H + + AD + V+ R +IV
Sbjct: 165 LTREQLQEELLDIWRETGKTVLLVTHDIDEAVFLADRVVVLSARPGRIVAE 215
|
NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|224054 COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 144 bits (366), Expect = 2e-38
Identities = 75/235 (31%), Positives = 125/235 (53%), Gaps = 22/235 (9%)
Query: 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEI 441
IE ++++ Y D D ++ G+I L+G +G+GK+T++ ++ +P SGEI
Sbjct: 5 IEVRNLTKKY--GGDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEI 62
Query: 442 LLDGNNIKGLDLKWLRQQIGLVNQEPALFAT-TIRENI-----LYGKDDATMEEITRAAK 495
L+ G ++ + +R++IG V QEP+L+ T+REN+ LYG EE R +
Sbjct: 63 LVLGYDVVK-EPAKVRRRIGYVPQEPSLYPELTVRENLEFFARLYGLSKEEAEE--RIEE 119
Query: 496 LSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAES 555
L E L ++ +V LSGG KQR++I+ A++ +P +L+LDE TS LD ES
Sbjct: 120 LLELF----GLEDKANKKVR----TLSGGMKQRLSIALALLHDPELLILDEPTSGLDPES 171
Query: 556 ENSVQEAL-DRVMVGRTTVVVA-HRLSTI-RNADVIAVVQGRKIVKTGSHEELIS 607
+ E L + G T++++ H L D + ++ KI+ G+ EEL
Sbjct: 172 RREIWELLRELAKEGGVTILLSTHILEEAEELCDRVIILNDGKIIAEGTPEELKE 226
|
Length = 293 |
| >gnl|CDD|224042 COG1117, PstB, ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 141 bits (359), Expect = 9e-38
Identities = 80/241 (33%), Positives = 134/241 (55%), Gaps = 22/241 (9%)
Query: 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLS--- 438
IE +D++ Y + A+ D LDIP K+ AL+G SG GKST++ + R + +
Sbjct: 8 IEVRDLNLYYGDK--HALKD-INLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGAR 64
Query: 439 --GEILLDGNNI--KGLDLKWLRQQIGLVNQEPALFATTIRENILYG-----KDDATMEE 489
GE+LLDG NI +D+ LR+++G+V Q+P F +I +N+ YG D ++E
Sbjct: 65 VEGEVLLDGKNIYDPKVDVVELRRRVGMVFQKPNPFPMSIYDNVAYGLRLHGIKDKELDE 124
Query: 490 ITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATS 549
I ++ L +A L + + ++ + + LSGGQ+QR+ I+RA+ P +LL+DE TS
Sbjct: 125 IVESS-LKKA-----ALWDEVKDRLHKSALGLSGGQQQRLCIARALAVKPEVLLMDEPTS 178
Query: 550 ALDAESENSVQEALDRVMVGRTTVVVAHRLS-TIRNADVIAVVQGRKIVKTGSHEELISN 608
ALD S ++E + + T V+V H + R +D A ++V+ G +++ +N
Sbjct: 179 ALDPISTLKIEELITELKKKYTIVIVTHNMQQAARVSDYTAFFYLGELVEFGPTDKIFTN 238
Query: 609 P 609
P
Sbjct: 239 P 239
|
Length = 253 |
| >gnl|CDD|216049 pfam00664, ABC_membrane, ABC transporter transmembrane region | Back alignment and domain information |
|---|
Score = 142 bits (361), Expect = 9e-38
Identities = 74/265 (27%), Positives = 133/265 (50%), Gaps = 6/265 (2%)
Query: 65 ACVHGVSVPVFFIFFGKLINIIGLAYLFPKTASHKVAKYSLDFVYLSVAILFSSWIEVSC 124
A + + + F L+ L L + + SL + ++V +L +
Sbjct: 4 AILLLILAGATALVFPLLLGRF-LDSLIDGNGDERSSLISLAILLIAVGVLQGLLL--QG 60
Query: 125 WMYTGERQAAKMRMAYLRSMLNQDISLFDT---EASTGEVISAITSDIIVVQDALSEKVG 181
Y GER ++R R++L Q + L + S GE+ S +T+D+ ++D L +K+G
Sbjct: 61 SFYLGERLGQRIRKRLFRALLRQILGLPMSFFDTNSVGELTSRLTNDVSKIRDGLGDKLG 120
Query: 182 NFMHYISRFLGGFIIGFARVWQISLVTLSIVPLIALAGGMYAYVTIGLIARVRKSYVKAG 241
F ++ +GGFI+ F W+++LV L+I+PL+ L + A L + +K+Y KAG
Sbjct: 121 LFFQSLATVVGGFIVMFYYGWKLTLVLLAILPLLILLSAVLAKKLRKLNRKEQKAYAKAG 180
Query: 242 EIAEEVIGNVRTVQAFAGEDKAVKVYKEALSNTYKYGRKAGLAKGLGLGSMHCVLFLSWS 301
+AEE + +RTV+AF E+ ++ Y +AL + K G K + GL G + +LS++
Sbjct: 181 SVAEESLSGIRTVKAFGREEYELERYDKALEDAEKAGIKKAITAGLSFGITQLISYLSYA 240
Query: 302 LLVWYVSVVVHKHISNGGESFTTML 326
L +W+ + +V + G F +
Sbjct: 241 LALWFGAYLVISGGLSVGTVFAFLS 265
|
This family represents a unit of six transmembrane helices. Many members of the ABC transporter family (pfam00005) have two such regions. Length = 274 |
| >gnl|CDD|213267 cd03300, ABC_PotA_N, ATP-binding cassette domain of the polyamine transporter | Back alignment and domain information |
|---|
Score = 140 bits (356), Expect = 1e-37
Identities = 87/238 (36%), Positives = 127/238 (53%), Gaps = 14/238 (5%)
Query: 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEI 441
IE ++VS Y VA+ D LDI G+ L+G SG GK+T++ LI F P SGEI
Sbjct: 1 IELENVSKFYGG--FVAL-DGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEI 57
Query: 442 LLDGNNIKGLDLKWLRQQIGLVNQEPALFA-TTIRENILYGKDDATMEEITRAAKLSEAM 500
LLDG +I L ++ + V Q ALF T+ ENI +G + + +++EA+
Sbjct: 58 LLDGKDITNLPPH--KRPVNTVFQNYALFPHLTVFENIAFGLRLKKLPKAEIKERVAEAL 115
Query: 501 SFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQ 560
+ + E + QLSGGQ+QR+AI+RA+V P +LLLDE ALD + +Q
Sbjct: 116 DLV-----QLEGYANRKPSQLSGGQQQRVAIARALVNEPKVLLLDEPLGALDLKLRKDMQ 170
Query: 561 EALDRV--MVGRTTVVVAHRLS-TIRNADVIAVVQGRKIVKTGSHEELISNPNSAYAA 615
L R+ +G T V V H + +D IAV+ KI + G+ EE+ P + + A
Sbjct: 171 LELKRLQKELGITFVFVTHDQEEALTMSDRIAVMNKGKIQQIGTPEEIYEEPANRFVA 228
|
PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 232 |
| >gnl|CDD|224059 COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 138 bits (350), Expect = 7e-37
Identities = 79/228 (34%), Positives = 121/228 (53%), Gaps = 22/228 (9%)
Query: 382 IEFKDVSFCYPSRP-DVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGE 440
IE K+VS Y V L+I AG+ VA+VG SGSGKST+++L+ +P SGE
Sbjct: 2 IELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGE 61
Query: 441 ILLDGNNIKGLDLKWL----RQQIGLVNQEPALFAT-TIRENI-----LYGKDDATMEEI 490
+L++G ++ L K L R++IG V Q L T+ EN+ + GK +
Sbjct: 62 VLINGKDLTKLSEKELAKLRRKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKR- 120
Query: 491 TRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSA 550
A +L E + L +R + +LSGGQ+QR+AI+RA++ NP I+L DE T
Sbjct: 121 -AAEELLEVL----GLEDRLLKKKPS---ELSGGQQQRVAIARALINNPKIILADEPTGN 172
Query: 551 LDAESENSVQEALDRV--MVGRTTVVVAHRLSTIRNADVIAVVQGRKI 596
LD+++ V E L + G+T ++V H + AD + ++ KI
Sbjct: 173 LDSKTAKEVLELLRELNKERGKTIIMVTHDPELAKYADRVIELKDGKI 220
|
Length = 226 |
| >gnl|CDD|213269 cd03369, ABCC_NFT1, ATP-binding cassette domain 2 of NFT1, subfamily C | Back alignment and domain information |
|---|
Score = 136 bits (345), Expect = 2e-36
Identities = 72/223 (32%), Positives = 123/223 (55%), Gaps = 22/223 (9%)
Query: 380 GHIEFKDVSFCYPSRPDVA-IFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLS 438
G IE +++S Y PD+ + + AG+ + +VG +G+GKST+I + RF E
Sbjct: 5 GEIEVENLSVRY--APDLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEE 62
Query: 439 GEILLDGNNIKGLDLKWLRQQIGLVNQEPALFATTIRENILYGKDDATMEEITRAAKLSE 498
G+I +DG +I + L+ LR + ++ Q+P LF+ TIR N L D+ + EEI A ++SE
Sbjct: 63 GKIEIDGIDISTIPLEDLRSSLTIIPQDPTLFSGTIRSN-LDPFDEYSDEEIYGALRVSE 121
Query: 499 AMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENS 558
G+ LS GQ+Q + ++RA++K P +L+LDEAT+++D ++
Sbjct: 122 G------------------GLNLSQGQRQLLCLARALLKRPRVLVLDEATASIDYATDAL 163
Query: 559 VQEALDRVMVGRTTVVVAHRLSTIRNADVIAVVQGRKIVKTGS 601
+Q+ + T + +AHRL TI + D I V+ ++ +
Sbjct: 164 IQKTIREEFTNSTILTIAHRLRTIIDYDKILVMDAGEVKEYDH 206
|
Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (multidrug resistance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. Length = 207 |
| >gnl|CDD|213222 cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein | Back alignment and domain information |
|---|
Score = 136 bits (346), Expect = 2e-36
Identities = 83/231 (35%), Positives = 112/231 (48%), Gaps = 29/231 (12%)
Query: 382 IEFKDVSFCYPSRPD-VAIFDKFCLDIPAGKIVALVGGSGSGKST---VISLIERFYEPL 437
IE K++S Y + V L I G+ VA+VG SGSGKST ++ ++R P
Sbjct: 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDR---PT 57
Query: 438 SGEILLDGNNIKGLDLKWL----RQQIGLVNQEPALFAT-TIRENI-----LYGKDDATM 487
SGE+ +DG +I L K L R+ IG V Q L T EN+ L G
Sbjct: 58 SGEVRVDGTDISKLSEKELAAFRRRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKER 117
Query: 488 EEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEA 547
E RA +L E + L +R +LSGGQ+QR+AI+RA+ +P I+L DE
Sbjct: 118 RE--RAEELLERV----GLGDRLNHYPS----ELSGGQQQRVAIARALANDPKIILADEP 167
Query: 548 TSALDAESENSVQEALDRV--MVGRTTVVVAHRLSTIRNADVIAVVQGRKI 596
T LD+E+ V E L + G T VVV H AD I ++ KI
Sbjct: 168 TGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPELAEYADRIIELRDGKI 218
|
This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. Length = 218 |
| >gnl|CDD|237648 PRK14250, PRK14250, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 136 bits (345), Expect = 4e-36
Identities = 78/239 (32%), Positives = 125/239 (52%), Gaps = 26/239 (10%)
Query: 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEI 441
IEFK+VS+ S I + G I +VG SG+GKST+I LI R +P G I
Sbjct: 4 IEFKEVSY---SSFGKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSI 60
Query: 442 LLDGNNIKGLDLKWLRQQIGLVNQEPALFATTIRENILY-----GKDDATMEEITRAAKL 496
L+DG +IK +D+ LR++IG+V Q+P LF T+++NI Y G+ + +E L
Sbjct: 61 LIDGVDIKTIDVIDLRRKIGMVFQQPHLFEGTVKDNIEYGPMLKGEKNVDVEYYLSIVGL 120
Query: 497 SEAMSFISNLPERFETQVGERGIQ-LSGGQKQRIAISRAIVKNPSILLLDEATSALDAES 555
++ + R ++ LSGG+ QR++I+R + NP +LLLDE TSALD S
Sbjct: 121 NKEYAT--------------RDVKNLSGGEAQRVSIARTLANNPEVLLLDEPTSALDPTS 166
Query: 556 ENSVQEALDRVM--VGRTTVVVAHRLSTI-RNADVIAVVQGRKIVKTGSHEELISNPNS 611
++E + ++ + T + + H + R D A + +V+ + +NP +
Sbjct: 167 TEIIEELIVKLKNKMNLTVIWITHNMEQAKRIGDYTAFLNKGILVEYAKTYDFFTNPQN 225
|
Length = 241 |
| >gnl|CDD|213224 cd03257, ABC_NikE_OppD_transporters, ATP-binding cassette domain of nickel/oligopeptides specific transporters | Back alignment and domain information |
|---|
Score = 136 bits (344), Expect = 5e-36
Identities = 77/234 (32%), Positives = 116/234 (49%), Gaps = 22/234 (9%)
Query: 382 IEFKDVSFCYPSRPD-VAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGE 440
+E K++S +P+ V D I G+ + LVG SGSGKST+ I +P SG
Sbjct: 2 LEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGS 61
Query: 441 ILLDGNNIKGLD---LKWLRQQIGLVNQEP--ALFAT-TIRENI-----LYGKDDATMEE 489
I+ DG ++ L K R++I +V Q+P +L TI E I ++GK
Sbjct: 62 IIFDGKDLLKLSRRLRKIRRKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEAR 121
Query: 490 ITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATS 549
L + LPE + +LSGGQ+QR+AI+RA+ NP +L+ DE TS
Sbjct: 122 KEAVLLLLVGV----GLPEEVLNR---YPHELSGGQRQRVAIARALALNPKLLIADEPTS 174
Query: 550 ALDAESENSVQEALD--RVMVGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTG 600
ALD + + + L + +G T + + H L + AD +AV+ KIV+ G
Sbjct: 175 ALDVSVQAQILDLLKKLQEELGLTLLFITHDLGVVAKIADRVAVMYAGKIVEEG 228
|
The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. Length = 228 |
| >gnl|CDD|226359 COG3839, MalK, ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 138 bits (351), Expect = 7e-36
Identities = 79/243 (32%), Positives = 127/243 (52%), Gaps = 22/243 (9%)
Query: 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGE 440
+E K+V + + LDI G+ V L+G SG GKST++ +I EP SGE
Sbjct: 3 ELELKNVRKSFG---SFEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGE 59
Query: 441 ILLDGNNIKGLDLKWLRQQIGLVNQEPALFAT-TIRENILYGKDDATM--EEITRAAKLS 497
IL+DG ++ L + ++ I +V Q AL+ T+ ENI +G + EI + K
Sbjct: 60 ILIDGRDVTDLPPE--KRGIAMVFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEV 117
Query: 498 EAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESEN 557
+ + +L R + +QLSGGQ+QR+A++RA+V+ P + LLDE S LDA+
Sbjct: 118 AKLLGLEHLLNR-------KPLQLSGGQRQRVALARALVRKPKVFLLDEPLSNLDAKLRV 170
Query: 558 SVQEALDRV--MVGRTTVVVAHRL---STIRNADVIAVVQGRKIVKTGSHEELISNPNSA 612
++ + ++ +G TT+ V H T+ AD I V+ +I + G+ EL P +
Sbjct: 171 LMRSEIKKLHERLGTTTIYVTHDQVEAMTL--ADRIVVMNDGRIQQVGTPLELYERPANL 228
Query: 613 YAA 615
+ A
Sbjct: 229 FVA 231
|
Length = 338 |
| >gnl|CDD|131259 TIGR02204, MsbA_rel, ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Score = 144 bits (364), Expect = 8e-36
Identities = 93/330 (28%), Positives = 156/330 (47%), Gaps = 38/330 (11%)
Query: 765 MGERLTLRVREKMFSAILSNEIGWFDEMDNSSSILASRLESDATLLRTIVVDRSTILIQN 824
+GER+ +R +F+ ++S +FD+ N S + SRL +D TLL++++ ++ ++N
Sbjct: 85 LGERVVADIRRAVFAHLISLSPSFFDK--NRSGEVVSRLTTDTTLLQSVIGSSLSMALRN 142
Query: 825 FGLVTASFVIAFILNWRITLVVVATYPLIISGHISEKLFFQGYGGNLSKA-------YLK 877
+ ++ FI + ++T +V+ PL++ L +G + K
Sbjct: 143 ALMCIGGLIMMFITSPKLTSLVLLAVPLVL-------LPILLFGRRVRKLSRESQDRIAD 195
Query: 878 ANMLAAEAVSNIRTVAAFCSEDKVLELYSRELVEPSKRSFIRGQIAGIFYGISQFFIFSS 937
A A E + IRTV AF ED + + + + + R + + I +F +
Sbjct: 196 AGSYAGETLGAIRTVQAFGHEDAERSRFGGAVEKAYEAARQRIRTRALLTAIVIVLVFGA 255
Query: 938 YGLALWYGS--VLMGK----ELASFKSVMKSFMVLIVTALAMGETLALVPDLLKGNQMAA 991
LW G+ V+ GK L F V + MV A ++G + +L + A
Sbjct: 256 IVGVLWVGAHDVIAGKMSAGTLGQF--VFYAVMV----AGSIGTLSEVWGELQRAAGAAE 309
Query: 992 SVFEVLDRKTQVIGDIGEEL------TNVEGTIELRGVHFSYPSRPEVVIFKDFNLKVRA 1045
+ E+L Q DI + G IE V+F+YP+RP+ NL VR
Sbjct: 310 RLIELL----QAEPDIKAPAHPKTLPVPLRGEIEFEQVNFAYPARPDQPALDGLNLTVRP 365
Query: 1046 GKSMALVGQSGSGKSTVLSLILRFYDPTAG 1075
G+++ALVG SG+GKST+ L+LRFYDP +G
Sbjct: 366 GETVALVGPSGAGKSTLFQLLLRFYDPQSG 395
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. Length = 576 |
| >gnl|CDD|130254 TIGR01186, proV, glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Score = 139 bits (351), Expect = 1e-35
Identities = 78/217 (35%), Positives = 123/217 (56%), Gaps = 13/217 (5%)
Query: 405 LDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWL----RQQI 460
L I G+I ++G SGSGKST + ++ R EP +G+I +DG NI L R++I
Sbjct: 14 LAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKI 73
Query: 461 GLVNQEPALFA-TTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGI 519
G+V Q+ ALF TI +N G + E R K E + + L E +E + +
Sbjct: 74 GMVFQQFALFPHMTILQNTSLGPELLGWPEQERKEKALELLKLV-GLEE-YEHRYPD--- 128
Query: 520 QLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVM--VGRTTVVVAH 577
+LSGG +QR+ ++RA+ P ILL+DEA SALD +S+Q+ L ++ + +T V + H
Sbjct: 129 ELSGGMQQRVGLARALAAEPDILLMDEAFSALDPLIRDSMQDELKKLQATLQKTIVFITH 188
Query: 578 RL-STIRNADVIAVVQGRKIVKTGSHEELISNPNSAY 613
L IR D I +++ +IV+ G+ +E++ NP + Y
Sbjct: 189 DLDEAIRIGDRIVIMKAGEIVQVGTPDEILRNPANEY 225
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lactis functionally complements an E.coli proU mutant. The comlementing locus is similar to a opuA locus in B.sutlis. This clarifies the differences in nomenclature [Transport and binding proteins, Amino acids, peptides and amines]. Length = 363 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 141 bits (359), Expect = 2e-35
Identities = 77/256 (30%), Positives = 133/256 (51%), Gaps = 33/256 (12%)
Query: 382 IEFKDVSFCYPSRPDVAI--------FDKFCLDIPAGKIVALVGGSGSGKSTVISLIERF 433
+ +++S Y SR + + D D+ G+ + LVG SGSGKST+ ++
Sbjct: 281 LSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGL 340
Query: 434 YEPLSGEILLDGNN--IKGLDLKWLRQQIGLVNQEPALFAT-----TIRENI-----LYG 481
P SG I+ DG + + G +L+ LR++I +V Q+P +++ T+ + + ++G
Sbjct: 341 LPPSSGSIIFDGQDLDLTGGELRRLRRRIQMVFQDP--YSSLNPRMTVGDILAEPLRIHG 398
Query: 482 KDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSI 541
R A+++E + + LP F + +LSGGQ+QR+AI+RA+ P +
Sbjct: 399 GGSGA----ERRARVAELLELVG-LPPEFLDR---YPHELSGGQRQRVAIARALALEPKL 450
Query: 542 LLLDEATSALDAESENSVQEALDRVM--VGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVK 598
L+LDE SALD + V L + +G T + ++H L+ +R AD +AV+ +IV+
Sbjct: 451 LILDEPVSALDVSVQAQVLNLLKDLQEELGLTYLFISHDLAVVRYIADRVAVMYDGRIVE 510
Query: 599 TGSHEELISNPNSAYA 614
G E++ NP Y
Sbjct: 511 EGPTEKVFENPQHPYT 526
|
Length = 539 |
| >gnl|CDD|226643 COG4175, ProV, ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 137 bits (347), Expect = 6e-35
Identities = 85/263 (32%), Positives = 134/263 (50%), Gaps = 34/263 (12%)
Query: 382 IEFKDVSFCYPSRPDVA------------IFDKF---------CLDIPAGKIVALVGGSG 420
IE K+V + P A I K LD+ G+I ++G SG
Sbjct: 5 IEIKNVYKIFGKNPKRALKLLDQGKSKAEILKKTGLVVGVNDASLDVEEGEIFVIMGLSG 64
Query: 421 SGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQ----QIGLVNQEPALFA-TTIR 475
SGKST++ L+ R EP GEIL+DG +I L LR+ +I +V Q AL T+
Sbjct: 65 SGKSTLVRLLNRLIEPTRGEILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHRTVL 124
Query: 476 ENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAI 535
EN+ +G + + + R + EA+ + L E + + +LSGG +QR+ ++RA+
Sbjct: 125 ENVAFGLEVQGVPKAEREERALEALE-LVGL-EGYADK---YPNELSGGMQQRVGLARAL 179
Query: 536 VKNPSILLLDEATSALDAESENSVQEALDRV--MVGRTTVVVAHRLS-TIRNADVIAVVQ 592
+P ILL+DEA SALD +Q+ L + + +T V + H L +R D IA+++
Sbjct: 180 ANDPDILLMDEAFSALDPLIRTEMQDELLELQAKLKKTIVFITHDLDEALRIGDRIAIMK 239
Query: 593 GRKIVKTGSHEELISNPNSAYAA 615
+IV+ G+ EE++ NP + Y
Sbjct: 240 DGEIVQVGTPEEILLNPANDYVR 262
|
Length = 386 |
| >gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins | Back alignment and domain information |
|---|
Score = 129 bits (326), Expect = 3e-34
Identities = 71/225 (31%), Positives = 109/225 (48%), Gaps = 52/225 (23%)
Query: 383 EFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEIL 442
E +++S Y R + D L I AG+IV ++G +G+GKST++ + +P SGEIL
Sbjct: 1 EVENLSVGYGGRT---VLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEIL 57
Query: 443 LDGNNIKGLDLKWLRQQIGLVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMSF 502
LDG ++ L K L ++I V Q AL E+ A L+
Sbjct: 58 LDGKDLASLSPKELARKIAYVPQ--AL-------------------ELLGLAHLA----- 91
Query: 503 ISNLPERFETQVGERGI-QLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQE 561
+R +LSGG++QR+ ++RA+ + P ILLLDE TS LD E
Sbjct: 92 -------------DRPFNELSGGERQRVLLARALAQEPPILLLDEPTSHLDI---AHQIE 135
Query: 562 ALDRVM-----VGRTTVVVAHRLS-TIRNADVIAVVQGRKIVKTG 600
L+ + G+T V+V H L+ R AD + +++ +IV G
Sbjct: 136 LLELLRRLARERGKTVVMVLHDLNLAARYADRVILLKDGRIVAQG 180
|
ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. Length = 180 |
| >gnl|CDD|236863 PRK11153, metN, DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 134 bits (339), Expect = 4e-34
Identities = 86/247 (34%), Positives = 136/247 (55%), Gaps = 25/247 (10%)
Query: 382 IEFKDVSFCYP-SRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGE 440
IE K++S +P + + L IPAG+I ++G SG+GKST+I I P SG
Sbjct: 2 IELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGR 61
Query: 441 ILLDGNNIKGLD---LKWLRQQIGLVNQEPALFAT-TIRENI-----LYGKDDATMEEI- 490
+L+DG ++ L L+ R+QIG++ Q L ++ T+ +N+ L G A EI
Sbjct: 62 VLVDGQDLTALSEKELRKARRQIGMIFQHFNLLSSRTVFDNVALPLELAGTPKA---EIK 118
Query: 491 TRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSA 550
R +L E + +S+ +R+ QLSGGQKQR+AI+RA+ NP +LL DEATSA
Sbjct: 119 ARVTELLE-LVGLSDKADRYPA-------QLSGGQKQRVAIARALASNPKVLLCDEATSA 170
Query: 551 LDAESENSVQEALDRV--MVGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELIS 607
LD + S+ E L + +G T V++ H + ++ D +AV+ ++V+ G+ E+ S
Sbjct: 171 LDPATTRSILELLKDINRELGLTIVLITHEMDVVKRICDRVAVIDAGRLVEQGTVSEVFS 230
Query: 608 NPNSAYA 614
+P
Sbjct: 231 HPKHPLT 237
|
Length = 343 |
| >gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain | Back alignment and domain information |
|---|
Score = 127 bits (322), Expect = 4e-34
Identities = 71/215 (33%), Positives = 100/215 (46%), Gaps = 60/215 (27%)
Query: 383 EFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEIL 442
E +++SF Y R + L + AG+IVALVG +GSGKST++ I +P SGEIL
Sbjct: 1 EIENLSFRYGGRTALDNVS---LTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEIL 57
Query: 443 LDGNNIKGLDLKWLRQQIGLVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMSF 502
+DG +I L L+ LR++IG V Q LS
Sbjct: 58 IDGKDIAKLPLEELRRRIGYVPQ------------------------------LS----- 82
Query: 503 ISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEA 562
GGQ+QR+A++RA++ NP +LLLDE TS LD S + E
Sbjct: 83 --------------------GGQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLEL 122
Query: 563 LDRVMV-GRTTVVVAHRLSTIRNA-DVIAVVQGRK 595
L + GRT ++V H A D + V++ K
Sbjct: 123 LRELAEEGRTVIIVTHDPELAELAADRVIVLKDGK 157
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157 |
| >gnl|CDD|224043 COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 134 bits (338), Expect = 5e-34
Identities = 74/230 (32%), Positives = 118/230 (51%), Gaps = 20/230 (8%)
Query: 395 PDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLK 454
D LDI +G++VAL+G SG+GKST++ +I P +G I L+G + D+
Sbjct: 13 GAFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLF--DVS 70
Query: 455 WLRQQ---IGLVNQEPALFA-TTIRENILYG--KDDATMEEITRAAKLSEAMSFI--SNL 506
L + +G V Q ALF T+ +NI +G E A++ E + + L
Sbjct: 71 NLAVRDRKVGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGL 130
Query: 507 PERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRV 566
+R+ Q LSGGQ+QR+A++RA+ P +LLLDE ALDA+ ++ L ++
Sbjct: 131 ADRYPAQ-------LSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKL 183
Query: 567 M--VGRTTVVVAHRLS-TIRNADVIAVVQGRKIVKTGSHEELISNPNSAY 613
+G TTV V H + AD + V+ +I + G +E+ +P S +
Sbjct: 184 HDRLGVTTVFVTHDQEEALELADRVVVLNQGRIEQVGPPDEVYDHPASRF 233
|
Length = 345 |
| >gnl|CDD|215640 PLN03232, PLN03232, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 142 bits (358), Expect = 5e-34
Identities = 136/539 (25%), Positives = 257/539 (47%), Gaps = 41/539 (7%)
Query: 112 VAILFSSWIEVSCWMYTGERQAAK-MRMAYLRSMLNQDISLFDTEASTGEVISAITSDII 170
VA+ F++ S W+ + AAK + A L S+L + F T TG VI+ + DI
Sbjct: 964 VAVTFTN----SFWLISSSLHAAKRLHDAMLNSILRAPMLFFHTN-PTGRVINRFSKDIG 1018
Query: 171 VVQDALSEKVGNFMHYISRFLGGFIIGFARVWQISLVTLSIVPLIALAGGMYAYVT---- 226
+ ++ + FM+ + + L F + V ISL +I+PL+ L Y Y
Sbjct: 1019 DIDRNVANLMNMFMNQLWQLLSTFAL-IGTVSTISL--WAIMPLLILFYAAYLYYQSTSR 1075
Query: 227 -IGLIARVRKSYVKAGEIAEEVIGNVRTVQAFAGEDKAVKVYKEALSNTYKYGRKAGLAK 285
+ + V +S + A E + + +++A+ D+ K+ +++ N ++ LA
Sbjct: 1076 EVRRLDSVTRSPIYA--QFGEALNGLSSIRAYKAYDRMAKINGKSMDNNIRFT----LAN 1129
Query: 286 GLGLGSMHCVLFLSWSLLVWYVSV--VVHKHISNGGESFTTMLNVVIAGLSLGQAAPDIT 343
+ L +++W + V+ + F + + ++++ ++
Sbjct: 1130 TSSNRWLTIRLETLGGVMIWLTATFAVLRNGNAENQAGFASTMGLLLSYTL--NITTLLS 1187
Query: 344 AFIRAKAAAYPIFEMIER-----DTMSKASS--KTGRKLDK--LSGHIEFKDVSFCY-PS 393
+R + A +ER D S+A++ + R + G I+F+DV Y P
Sbjct: 1188 GVLRQASKAENSLNSVERVGNYIDLPSEATAIIENNRPVSGWPSRGSIKFEDVHLRYRPG 1247
Query: 394 RPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDL 453
P V F + P+ K V +VG +G+GKS++++ + R E G I++D ++ L
Sbjct: 1248 LPPVLHGLSFFVS-PSEK-VGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKFGL 1305
Query: 454 KWLRQQIGLVNQEPALFATTIRENI--LYGKDDATMEEITRAAKLSEAMSFISNLPERFE 511
LR+ + ++ Q P LF+ T+R NI +DA + E A + + I P +
Sbjct: 1306 TDLRRVLSIIPQSPVLFSGTVRFNIDPFSEHNDADLWEALERAHIKDV---IDRNPFGLD 1362
Query: 512 TQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRT 571
+V E G S GQ+Q ++++RA+++ IL+LDEAT+++D +++ +Q + T
Sbjct: 1363 AEVSEGGENFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQRTIREEFKSCT 1422
Query: 572 TVVVAHRLSTIRNADVIAVVQGRKIVKTGSHEELISNPNSAYAALVQLQEAASQQSNSS 630
+V+AHRL+TI + D I V+ ++++ S +EL+S SA+ +V A+ Q S+
Sbjct: 1423 MLVIAHRLNTIIDCDKILVLSSGQVLEYDSPQELLSRDTSAFFRMVHSTGPANAQYLSN 1481
|
Length = 1495 |
| >gnl|CDD|213223 cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the binding protein-dependent phosphonate transport system | Back alignment and domain information |
|---|
Score = 129 bits (327), Expect = 1e-33
Identities = 82/243 (33%), Positives = 125/243 (51%), Gaps = 30/243 (12%)
Query: 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEI 441
IE +++S YP+ L I G+ VAL+G SG+GKST++ + EP SG +
Sbjct: 1 IEVENLSKTYPN--GKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSV 58
Query: 442 LLDGNNI---KGLDLKWLRQQIGLVNQEPALFA-TTIRENILYGKDDA-----------T 486
L+DG +I KG L+ LR+QIG++ Q+ L ++ EN+L G+
Sbjct: 59 LIDGTDINKLKGKALRQLRRQIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFP 118
Query: 487 MEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDE 546
EE RA E L ++ + QLSGGQ+QR+AI+RA+++ P ++L DE
Sbjct: 119 KEEKQRALAALER----VGLLDKAYQRAD----QLSGGQQQRVAIARALMQQPKLILADE 170
Query: 547 ATSALDAESENSVQEALDRV--MVGRTTVVVAHRLSTIR-NAD-VIAVVQGRKIVKTGSH 602
++LD S V + L R+ G T +V H++ R AD ++ + GR IV G
Sbjct: 171 PVASLDPASSRQVMDLLKRINREEGITVIVSLHQVDLAREYADRIVGLKDGR-IVFDGPP 229
Query: 603 EEL 605
EL
Sbjct: 230 AEL 232
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 241 |
| >gnl|CDD|224049 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 129 bits (326), Expect = 2e-33
Identities = 81/254 (31%), Positives = 131/254 (51%), Gaps = 26/254 (10%)
Query: 382 IEFKDVSFCYPSRPDV-AIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGE 440
+ +++S Y + L+I G+ + +VG SGSGKST+ L+ +P SG
Sbjct: 4 LSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGS 63
Query: 441 ILLDGNNI-KGLDLKWLRQQIGLVNQEP--ALFA-TTIRENILYGKDDATMEEI-TRAAK 495
ILLDG + K + + +V Q+P +L T+ + + + R A+
Sbjct: 64 ILLDGKPLAPKKRAKAFYRPVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQQRIAE 123
Query: 496 LSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAES 555
L + + LP F + R +LSGGQ+QRIAI+RA++ P +L+LDE TSALD
Sbjct: 124 LLDQV----GLPPSFLDR---RPHELSGGQRQRIAIARALIPEPKLLILDEPTSALDV-- 174
Query: 556 ENSVQ-EALDR-VMVGR----TTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELISN 608
SVQ + L+ + + + T + ++H L+ + + D IAV+ +IV+ G EEL+S+
Sbjct: 175 --SVQAQILNLLLELKKERGLTYLFISHDLALVEHMCDRIAVMDNGQIVEIGPTEELLSH 232
Query: 609 PNSAYAALVQLQEA 622
P+ Y L EA
Sbjct: 233 PSHPYTRE--LLEA 244
|
Length = 252 |
| >gnl|CDD|213229 cd03262, ABC_HisP_GlnQ, ATP-binding cassette domain of the histidine and glutamine transporters | Back alignment and domain information |
|---|
Score = 127 bits (322), Expect = 3e-33
Identities = 77/211 (36%), Positives = 110/211 (52%), Gaps = 40/211 (18%)
Query: 405 LDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNI--KGLDLKWLRQQIGL 462
L + G++V ++G SGSGKST++ I EP SG I++DG + ++ LRQ++G+
Sbjct: 21 LTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINELRQKVGM 80
Query: 463 VNQEPALFA-TTIRENILYG--------KDDAT---MEEITRAAKLSEAMSFISNLPERF 510
V Q+ LF T+ ENI K +A +E + + +A ++ +
Sbjct: 81 VFQQFNLFPHLTVLENITLAPIKVKGMSKAEAEERALELLEKVGLADKADAYPA------ 134
Query: 511 ETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMV-- 568
QLSGGQ+QR+AI+RA+ NP ++L DE TSALD E V E LD VM
Sbjct: 135 ---------QLSGGQQQRVAIARALAMNPKVMLFDEPTSALDPE---LVGEVLD-VMKDL 181
Query: 569 ---GRTTVVVAHRLSTIRN-AD-VIAVVQGR 594
G T VVV H + R AD VI + GR
Sbjct: 182 AEEGMTMVVVTHEMGFAREVADRVIFMDDGR 212
|
HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, respectively. Histidine permease is a multi-subunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryotic extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein. Length = 213 |
| >gnl|CDD|215595 PLN03130, PLN03130, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 139 bits (352), Expect = 3e-33
Identities = 83/251 (33%), Positives = 143/251 (56%), Gaps = 8/251 (3%)
Query: 379 SGHIEFKDVSFCYPSRPDVA-IFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPL 437
SG I+F+DV Y RP++ + +I + V +VG +G+GKS++++ + R E
Sbjct: 1235 SGSIKFEDVVLRY--RPELPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELE 1292
Query: 438 SGEILLDGNNIKGLDLKWLRQQIGLVNQEPALFATTIRENI--LYGKDDATMEEITRAAK 495
G IL+DG +I L LR+ +G++ Q P LF+ T+R N+ +DA + E A
Sbjct: 1293 RGRILIDGCDISKFGLMDLRKVLGIIPQAPVLFSGTVRFNLDPFNEHNDADLWESLERAH 1352
Query: 496 LSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAES 555
L + I + +V E G S GQ+Q ++++RA+++ IL+LDEAT+A+D +
Sbjct: 1353 LKDV---IRRNSLGLDAEVSEAGENFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRT 1409
Query: 556 ENSVQEALDRVMVGRTTVVVAHRLSTIRNADVIAVVQGRKIVKTGSHEELISNPNSAYAA 615
+ +Q+ + T +++AHRL+TI + D I V+ ++V+ + E L+SN SA++
Sbjct: 1410 DALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILVLDAGRVVEFDTPENLLSNEGSAFSK 1469
Query: 616 LVQLQEAASQQ 626
+VQ AA+ Q
Sbjct: 1470 MVQSTGAANAQ 1480
|
Length = 1622 |
| >gnl|CDD|224041 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 128 bits (324), Expect = 4e-33
Identities = 71/223 (31%), Positives = 108/223 (48%), Gaps = 29/223 (13%)
Query: 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEI 441
+E + VS + V + + L + G+ VA++G SG GKST++ LI +P SGE+
Sbjct: 4 LEIEGVSKSFGG---VEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEV 60
Query: 442 LLDGNNIKGLDLKWLRQQIGLVNQEPALFA-TTIRENILYGKDDATMEEITRAAKLSEAM 500
LLDG + G IG V QE AL T+ +N+ G + + + E +
Sbjct: 61 LLDGRPVTGP-----GPDIGYVFQEDALLPWLTVLDNVALGLELRGKSKAEARERAKELL 115
Query: 501 SFISNLPERFETQVGERGI------QLSGGQKQRIAISRAIVKNPSILLLDEATSALDAE 554
VG G QLSGG +QR+AI+RA+ P +LLLDE ALDA
Sbjct: 116 -----------ELVGLAGFEDKYPHQLSGGMRQRVAIARALATRPKLLLLDEPFGALDAL 164
Query: 555 SENSVQEALDRVM--VGRTTVVVAHRLS-TIRNADVIAVVQGR 594
+ +Q+ L R+ +T ++V H + + AD + V+ R
Sbjct: 165 TREELQDELLRLWEETRKTVLLVTHDVDEAVYLADRVVVLSNR 207
|
Length = 248 |
| >gnl|CDD|213263 cd03296, ABC_CysA_sulfate_importer, ATP-binding cassette domain of the sulfate transporter | Back alignment and domain information |
|---|
Score = 127 bits (321), Expect = 7e-33
Identities = 79/242 (32%), Positives = 126/242 (52%), Gaps = 22/242 (9%)
Query: 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEI 441
IE ++VS + + D LDIP+G++VAL+G SGSGK+T++ LI P SG I
Sbjct: 3 IEVRNVSKRFGDFVAL---DDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTI 59
Query: 442 LLDGNNIKGLDLKWLRQQIGLVNQEPALFA-TTIRENILYG----KDDATMEEITRAAKL 496
L G + + ++ + +G V Q ALF T+ +N+ +G E AK+
Sbjct: 60 LFGGEDATDVPVQ--ERNVGFVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKV 117
Query: 497 SEAMSFI--SNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAE 554
E + + L +R+ Q LSGGQ+QR+A++RA+ P +LLLDE ALDA+
Sbjct: 118 HELLKLVQLDWLADRYPAQ-------LSGGQRQRVALARALAVEPKVLLLDEPFGALDAK 170
Query: 555 SENSVQEALDRVM--VGRTTVVVAHRLS-TIRNADVIAVVQGRKIVKTGSHEELISNPNS 611
++ L R+ + TTV V H + AD + V+ +I + G+ +E+ +P S
Sbjct: 171 VRKELRRWLRRLHDELHVTTVFVTHDQEEALEVADRVVVMNKGRIEQVGTPDEVYDHPAS 230
Query: 612 AY 613
+
Sbjct: 231 PF 232
|
Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 239 |
| >gnl|CDD|226967 COG4608, AppF, ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 128 bits (323), Expect = 8e-33
Identities = 79/258 (30%), Positives = 109/258 (42%), Gaps = 70/258 (27%)
Query: 370 KTGRKLDKLSGHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISL 429
G+ K VSF I G+ + LVG SG GKST+ L
Sbjct: 15 PVGKGFGKKRYVKAVDGVSF----------------SIKEGETLGLVGESGCGKSTLGRL 58
Query: 430 IERFYEPLSGEILLDGNNIKGLDLKWLRQQIGLVNQEPALFATTIRENILYGKDDATMEE 489
I EP SGEIL +G +I L + R+++ E
Sbjct: 59 ILGLEEPTSGEILFEGKDITKLSKEERRERV---------------------------LE 91
Query: 490 ITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATS 549
+ L E F+ P +LSGGQ+QRI I+RA+ NP +++ DE S
Sbjct: 92 LLEKVGLPE--EFLYRYP-----------HELSGGQRQRIGIARALALNPKLIVADEPVS 138
Query: 550 ALDAESENSVQ-------EALDRVMVGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGS 601
ALD SVQ + L + G T + ++H LS +R +D IAV+ KIV+ G
Sbjct: 139 ALDV----SVQAQILNLLKDLQEEL-GLTYLFISHDLSVVRYISDRIAVMYLGKIVEIGP 193
Query: 602 HEELISNPNSAY-AALVQ 618
EE+ SNP Y AL+
Sbjct: 194 TEEVFSNPLHPYTKALLS 211
|
Length = 268 |
| >gnl|CDD|213266 cd03299, ABC_ModC_like, ATP-binding cassette domain similar to the molybdate transporter | Back alignment and domain information |
|---|
Score = 126 bits (319), Expect = 1e-32
Identities = 73/217 (33%), Positives = 115/217 (52%), Gaps = 15/217 (6%)
Query: 405 LDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIGLVN 464
L++ G ++G +GSGKS ++ I F +P SG+ILL+G +I +L ++ I V
Sbjct: 20 LEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDIT--NLPPEKRDISYVP 77
Query: 465 QEPALFA-TTIRENILYGKDDATMEEITRAAKLSEAMSF--ISNLPERFETQVGERGIQL 521
Q ALF T+ +NI YG +++ K+ E I +L R L
Sbjct: 78 QNYALFPHMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGIDHLLNRKPET-------L 130
Query: 522 SGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVM--VGRTTVVVAHRL 579
SGG++QR+AI+RA+V NP ILLLDE SALD ++ ++E L ++ G T + V H
Sbjct: 131 SGGEQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDF 190
Query: 580 STIRN-ADVIAVVQGRKIVKTGSHEELISNPNSAYAA 615
AD +A++ K+++ G EE+ P + + A
Sbjct: 191 EEAWALADKVAIMLNGKLIQVGKPEEVFKKPKNEFVA 227
|
Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|130041 TIGR00968, 3a0106s01, sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 126 bits (318), Expect = 2e-32
Identities = 76/224 (33%), Positives = 120/224 (53%), Gaps = 15/224 (6%)
Query: 396 DVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKW 455
D L++P G +VAL+G SGSGKST++ +I +P SG I L+G + + +
Sbjct: 12 SFQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHAR- 70
Query: 456 LRQQIGLVNQEPALFA-TTIRENILYGKDDATMEEITRAAKLSEAMSFI--SNLPERFET 512
++IG V Q ALF T+R+NI +G + + A++ E + + L +R+
Sbjct: 71 -DRKIGFVFQHYALFKHLTVRDNIAFGLEIRKHPKAKIKARVEELLELVQLEGLGDRYPN 129
Query: 513 QVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVM--VGR 570
Q LSGGQ+QR+A++RA+ P +LLLDE ALDA+ ++ L ++ V
Sbjct: 130 Q-------LSGGQRQRVALARALAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHV 182
Query: 571 TTVVVAHRLS-TIRNADVIAVVQGRKIVKTGSHEELISNPNSAY 613
TTV V H + AD I V+ KI + GS +E+ +P + +
Sbjct: 183 TTVFVTHDQEEAMEVADRIVVMSNGKIEQIGSPDEVYDHPANPF 226
|
[Transport and binding proteins, Anions]. Length = 237 |
| >gnl|CDD|162242 TIGR01187, potA, spermidine/putrescine ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 128 bits (324), Expect = 2e-32
Identities = 70/209 (33%), Positives = 111/209 (53%), Gaps = 19/209 (9%)
Query: 415 LVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIGLVNQEPALFA-TT 473
L+G SG GK+T++ L+ F +P SG I+LDG ++ + + I +V Q ALF T
Sbjct: 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVPPH--LRHINMVFQSYALFPHMT 58
Query: 474 IRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERG----IQLSGGQKQRI 529
+ EN+ +G + ++ EA+ + Q+ E QLSGGQ+QR+
Sbjct: 59 VEENVAFGLKMRKVPRAEIKPRVLEALRLV---------QLEEFADRKPHQLSGGQQQRV 109
Query: 530 AISRAIVKNPSILLLDEATSALDAESENSVQEALDRVM--VGRTTVVVAHRLS-TIRNAD 586
A++RA+V P ILLLDE SALD + + +Q L + +G T V V H + +D
Sbjct: 110 ALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVFVTHDQEEAMTMSD 169
Query: 587 VIAVVQGRKIVKTGSHEELISNPNSAYAA 615
IA+++ KI + G+ EE+ P + + A
Sbjct: 170 RIAIMRKGKIAQIGTPEEIYEEPANLFVA 198
|
This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included) [Transport and binding proteins, Amino acids, peptides and amines]. Length = 325 |
| >gnl|CDD|184586 PRK14240, PRK14240, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 124 bits (314), Expect = 8e-32
Identities = 81/244 (33%), Positives = 127/244 (52%), Gaps = 23/244 (9%)
Query: 380 GHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYE---- 435
G I KD+ Y D K LDI ++ AL+G SG GKST + + R +
Sbjct: 2 GKISVKDLDLFYG---DFQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPS 58
Query: 436 -PLSGEILLDGNNI--KGLDLKWLRQQIGLVNQEPALFATTIRENILYG------KDDAT 486
+ GE+LLDG +I +D+ LR+++G+V Q+P F +I +N+ YG KD
Sbjct: 59 VKIEGEVLLDGQDIYKSDIDVNQLRKRVGMVFQQPNPFPMSIYDNVAYGPRTHGIKDKKK 118
Query: 487 MEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDE 546
++EI + L A L + + ++ + + LSGGQ+QR+ I+RA+ P +LL+DE
Sbjct: 119 LDEIVEKS-LKGAA-----LWDEVKDRLKKSALGLSGGQQQRLCIARALAVEPEVLLMDE 172
Query: 547 ATSALDAESENSVQEALDRVMVGRTTVVVAHRL-STIRNADVIAVVQGRKIVKTGSHEEL 605
TSALD S ++E + + T V+V H + R +D A +IV+ G +L
Sbjct: 173 PTSALDPISTLKIEELIQELKKDYTIVIVTHNMQQASRISDKTAFFLNGEIVEFGDTVDL 232
Query: 606 ISNP 609
+NP
Sbjct: 233 FTNP 236
|
Length = 250 |
| >gnl|CDD|225438 COG2884, FtsE, Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Score = 123 bits (311), Expect = 9e-32
Identities = 76/239 (31%), Positives = 114/239 (47%), Gaps = 33/239 (13%)
Query: 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEI 441
I F++VS YP + IP G+ V L G SG+GKST++ LI P G+I
Sbjct: 2 IRFENVSKAYPGGRE--ALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKI 59
Query: 442 LLDG---NNIKGLDLKWLRQQIGLVNQEPALFAT-TIRENILY-----GKDDATMEEITR 492
L++G + +KG ++ +LR+QIG+V Q+ L T+ EN+ GK +
Sbjct: 60 LVNGHDLSRLKGREIPFLRRQIGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVS 119
Query: 493 AA----KLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEAT 548
L LP QLSGG++QR+AI+RAIV P++LL DE T
Sbjct: 120 EVLDLVGLKHKAR---ALP-----------SQLSGGEQQRVAIARAIVNQPAVLLADEPT 165
Query: 549 SALDAESENSVQEALDRVMVGRTTVVVA-HRLSTI--RNADVIAVVQGRKIVKTGSHEE 604
LD + + + + TTV++A H L + V+A+ GR +V+ S
Sbjct: 166 GNLDPDLSWEIMRLFEEINRLGTTVLMATHDLELVNRMRHRVLALEDGR-LVRDESRGV 223
|
Length = 223 |
| >gnl|CDD|213259 cd03292, ABC_FtsE_transporter, ATP-binding cassette domain of the cell division transporter | Back alignment and domain information |
|---|
Score = 122 bits (309), Expect = 1e-31
Identities = 73/222 (32%), Positives = 118/222 (53%), Gaps = 18/222 (8%)
Query: 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEI 441
IEF +V+ YP A D + I AG+ V LVG SG+GKST++ LI + P SG I
Sbjct: 1 IEFINVTKTYP--NGTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTI 58
Query: 442 LLDG---NNIKGLDLKWLRQQIGLVNQEPALFAT-TIRENILYGKDDATMEEITRAAKLS 497
++G ++++G + +LR++IG+V Q+ L + EN+ + +E +
Sbjct: 59 RVNGQDVSDLRGRAIPYLRRKIGVVFQDFRLLPDRNVYENVAF-----ALEVTGVPPR-- 111
Query: 498 EAMSFISNLPERFETQVGERGI--QLSGGQKQRIAISRAIVKNPSILLLDEATSALDAES 555
E + E R + +LSGG++QR+AI+RAIV +P+IL+ DE T LD ++
Sbjct: 112 EIRKRVPAALELVGLSHKHRALPAELSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDT 171
Query: 556 ENSVQEALDRVMVGRTTVVVAHRLSTIRNA---DVIAVVQGR 594
+ L ++ TTVVVA + + VIA+ +G+
Sbjct: 172 TWEIMNLLKKINKAGTTVVVATHAKELVDTTRHRVIALERGK 213
|
FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. Length = 214 |
| >gnl|CDD|184582 PRK14236, PRK14236, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 123 bits (312), Expect = 3e-31
Identities = 80/261 (30%), Positives = 129/261 (49%), Gaps = 23/261 (8%)
Query: 363 TMSKASSKTGRKLDKLSGHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSG 422
T+ L +E ++++ Y A+FD + IP ++ A +G SG G
Sbjct: 7 TLMALPLLDVLNLSDEQTALEVRNLNLFYGD--KQALFD-ISMRIPKNRVTAFIGPSGCG 63
Query: 423 KSTVISLIERFYEPL-----SGEILLDGNNI--KGLDLKWLRQQIGLVNQEPALFATTIR 475
KST++ R + + GEI LDG NI K +D+ LR+++G+V Q P F +I
Sbjct: 64 KSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKVDVAELRRRVGMVFQRPNPFPKSIY 123
Query: 476 ENILYG------KDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRI 529
EN++YG + ++E + A L + + ++ E LSGGQ+QR+
Sbjct: 124 ENVVYGLRLQGINNRRVLDEAVERSLRGAA------LWDEVKDRLHENAFGLSGGQQQRL 177
Query: 530 AISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRL-STIRNADVI 588
I+RAI P +LLLDE TSALD S ++E + + T V+V H + R +D
Sbjct: 178 VIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKSKYTIVIVTHNMQQAARVSDYT 237
Query: 589 AVVQGRKIVKTGSHEELISNP 609
A + K+V+ G + L ++P
Sbjct: 238 AFMYMGKLVEYGDTDTLFTSP 258
|
Length = 272 |
| >gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A | Back alignment and domain information |
|---|
Score = 120 bits (303), Expect = 4e-31
Identities = 61/218 (27%), Positives = 107/218 (49%), Gaps = 48/218 (22%)
Query: 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEI 441
IE +++S Y + D L + G+I L+G +G+GK+T+I +I +P SGEI
Sbjct: 1 IEVRNLSKRYGKKT---ALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEI 57
Query: 442 LLDGNNIKGLDLKWLRQQIGLVNQEPALFAT-TIRENILYGKDDATMEEITRAAKLSEAM 500
+ G +IK + + ++++IG + +EP+L+ T+REN
Sbjct: 58 KVLGKDIK-KEPEEVKRRIGYLPEEPSLYENLTVREN----------------------- 93
Query: 501 SFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQ 560
++LSGG KQR+A+++A++ +P +L+LDE TS LD ES
Sbjct: 94 ------------------LKLSGGMKQRLALAQALLHDPELLILDEPTSGLDPESRREFW 135
Query: 561 EALDRVMVGRTTVVVA-HRLSTIRN-ADVIAVVQGRKI 596
E L + T++++ H L D +A++ +I
Sbjct: 136 ELLRELKKEGKTILLSSHILEEAERLCDRVAILNNGRI 173
|
This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 173 |
| >gnl|CDD|216049 pfam00664, ABC_membrane, ABC transporter transmembrane region | Back alignment and domain information |
|---|
Score = 123 bits (310), Expect = 5e-31
Identities = 83/279 (29%), Positives = 135/279 (48%), Gaps = 13/279 (4%)
Query: 700 CGTICAIIAGAQMPLFALGVSQALVAYYMDWDTTQREVKKITILFCCAAVITVIVHAIEH 759
+ I+AGA +F L + + +D E + L + V+ +
Sbjct: 3 IAILLLILAGATALVFPL-LLGRFLDSLID--GNGDERSSLISLAILLIAVGVLQGLLLQ 59
Query: 760 LSFGIMGERLTLRVREKMFSAILSNEIGWFDEMD--NSSSILASRLESDATLLRTIVVDR 817
SF +GERL R+R+++F A+L +G NS L SRL +D + +R + D+
Sbjct: 60 GSF-YLGERLGQRIRKRLFRALLRQILGLPMSFFDTNSVGELTSRLTNDVSKIRDGLGDK 118
Query: 818 STILIQNFGLVTASFVIAFILNWRITLVVVATYPLII--SGHISEKLFFQGYGGNLSKAY 875
+ Q+ V F++ F W++TLV++A PL+I S +++K + KAY
Sbjct: 119 LGLFFQSLATVVGGFIVMFYYGWKLTLVLLAILPLLILLSAVLAKK--LRKLNRKEQKAY 176
Query: 876 LKANMLAAEAVSNIRTVAAFCSEDKVLELYSRELVEPSKRSFIRGQIAGIFYGISQFFIF 935
KA +A E++S IRTV AF E+ LE Y + L + K + AG+ +GI+Q +
Sbjct: 177 AKAGSVAEESLSGIRTVKAFGREEYELERYDKALEDAEKAGIKKAITAGLSFGITQLISY 236
Query: 936 SSYGLALWYGSVLMGKELASFKSVMKSFMVLIVTALAMG 974
SY LALW+G+ L+ ++ SV F L + G
Sbjct: 237 LSYALALWFGAYLV---ISGGLSVGTVFAFLSLGLQLSG 272
|
This family represents a unit of six transmembrane helices. Many members of the ABC transporter family (pfam00005) have two such regions. Length = 274 |
| >gnl|CDD|226164 COG3638, COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 122 bits (309), Expect = 5e-31
Identities = 81/245 (33%), Positives = 124/245 (50%), Gaps = 34/245 (13%)
Query: 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEI 441
IE K++S YP L+I G++VA++G SG+GKST++ + +P SGEI
Sbjct: 4 IEVKNLSKTYPG--GHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEI 61
Query: 442 LLDGNNIKGL---DLKWLRQQIGLVNQEPALFA-TTIRENILYGKDDATMEEITRAAKLS 497
L +G I L +L+ LR+ IG++ Q+ L ++ EN+L G+ T S
Sbjct: 62 LFNGVQITKLKGKELRKLRRDIGMIFQQFNLVPRLSVLENVLLGRLGYT----------S 111
Query: 498 EAMSFISNLPERFE-------TQVG------ERGIQLSGGQKQRIAISRAIVKNPSILLL 544
S + + +VG +R LSGGQ+QR+AI+RA+V+ P I+L
Sbjct: 112 TWRSLFGLFSKEDKAQALDALERVGILDKAYQRASTLSGGQQQRVAIARALVQQPKIILA 171
Query: 545 DEATSALDAESENSVQEALDRVMV--GRTTVVVAHRLSTIRN-AD-VIAVVQGRKIVKTG 600
DE ++LD ES V + L + G T +V H++ + AD +I + GR IV G
Sbjct: 172 DEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDLAKKYADRIIGLKAGR-IVFDG 230
Query: 601 SHEEL 605
EL
Sbjct: 231 PASEL 235
|
Length = 258 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 128 bits (324), Expect = 6e-31
Identities = 74/291 (25%), Positives = 124/291 (42%), Gaps = 44/291 (15%)
Query: 405 LDIPAGKIVALVGGSGSGKST----VISLIERFYEPLSGEILLDGNNIKGLDLKWLRQ-- 458
++ G+I+ +VG SGSGKST ++ L+ SGE++LDG ++ GL + +R+
Sbjct: 30 FEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSEREMRKLR 89
Query: 459 --QIGLVNQEP-ALF------------ATTIRENILYGKDDATMEEITRAAKLSEAMSFI 503
+I ++ Q+P A + + E+ L +
Sbjct: 90 GKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSRAEARKRAVELLEQVGLPDPER-R 148
Query: 504 SNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEAL 563
P QLSGG +QR+ I+ A+ P +L+ DE T+ALD ++ + + L
Sbjct: 149 DRYPH-----------QLSGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLL 197
Query: 564 DRVMV--GRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELISNPNSAY-----AA 615
+ G + + H L + AD + V+ +IV+TG EE++SNP Y AA
Sbjct: 198 KDLQRELGMAVLFITHDLGVVAELADRVVVMYKGEIVETGPTEEILSNPQHPYTRGLLAA 257
Query: 616 LVQLQEAASQQSNSSQCPNMGRPLSIKFSRELSGTRTSFGASFRSEKESVL 666
+ +L + + LS+ R LS S F E+ V
Sbjct: 258 VPRLGDEKIIRLPRRGPLRAEPLLSV---RNLSKRYGSRKGLFVRERGEVK 305
|
Length = 539 |
| >gnl|CDD|182692 PRK10744, pstB, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 122 bits (307), Expect = 8e-31
Identities = 74/227 (32%), Positives = 114/227 (50%), Gaps = 34/227 (14%)
Query: 405 LDIPAGKIVALVGGSGSGKSTVISLIERFYE--P---LSGEILLDGNNI--KGLDLKWLR 457
LDI ++ A +G SG GKST++ R YE P GEILLDG NI D+ LR
Sbjct: 34 LDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQDIALLR 93
Query: 458 QQIGLVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFE------ 511
++G+V Q+P F +I +NI +G +L E +S + + ER E
Sbjct: 94 AKVGMVFQKPTPFPMSIYDNIAFG------------VRLFEKLS-RAEMDERVEWALTKA 140
Query: 512 -------TQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALD 564
++ + G LSGGQ+QR+ I+R I P +LLLDE SALD S ++E +
Sbjct: 141 ALWNEVKDKLHQSGYSLSGGQQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELIT 200
Query: 565 RVMVGRTTVVVAHRL-STIRNADVIAVVQGRKIVKTGSHEELISNPN 610
+ T V+V H + R +D A + ++++ G+ + + + P
Sbjct: 201 ELKQDYTVVIVTHNMQQAARCSDYTAFMYLGELIEFGNTDTIFTKPA 247
|
Length = 260 |
| >gnl|CDD|172741 PRK14253, PRK14253, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 121 bits (304), Expect = 1e-30
Identities = 68/219 (31%), Positives = 118/219 (53%), Gaps = 19/219 (8%)
Query: 404 CLDIPAGKIVALVGGSGSGKSTVISLIERFYE-----PLSGEILLDGNNIKG-LDLKWLR 457
L IPA ++ AL+G SG GKST++ + R + ++G++ +DG +I G +D+ LR
Sbjct: 23 NLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVADLR 82
Query: 458 QQIGLVNQEPALFATTIRENILYG------KDDATMEEITRAAKLSEAMSFISNLPERFE 511
++G+V Q+P F +I EN+ YG KD ++E+ + A L + +
Sbjct: 83 IKVGMVFQKPNPFPMSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAA------LWDEVK 136
Query: 512 TQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRT 571
++ LSGGQ+QR+ I+R I P ++L+DE TSALD + + ++E ++ + T
Sbjct: 137 DRLKSHAFGLSGGQQQRLCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKKNYT 196
Query: 572 TVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELISNP 609
V+V H + R +D A ++V+ + + SNP
Sbjct: 197 IVIVTHSMQQARRISDRTAFFLMGELVEHDDTQVIFSNP 235
|
Length = 249 |
| >gnl|CDD|237649 PRK14254, PRK14254, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 121 bits (306), Expect = 2e-30
Identities = 76/247 (30%), Positives = 128/247 (51%), Gaps = 30/247 (12%)
Query: 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPL---- 437
IE +D++ Y D D +DIP ++ A++G SG GKST + I R + +
Sbjct: 40 IEARDLNVFYG---DEQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAAR 96
Query: 438 -SGEILLDGNNI--KGLDLKWLRQQIGLVNQEPALFATTIRENILYGKD--------DAT 486
GE+ G N+ +D LR++IG+V Q+P F +I +N+ YG D
Sbjct: 97 VEGELTFRGKNVYDADVDPVALRRRIGMVFQKPNPFPKSIYDNVAYGLKIQGYDGDIDER 156
Query: 487 MEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDE 546
+EE R A L + + + Q+ G+ LSGGQ+QR+ I+RAI +P ++L+DE
Sbjct: 157 VEESLRRAALWDEV----------KDQLDSSGLDLSGGQQQRLCIARAIAPDPEVILMDE 206
Query: 547 ATSALDAESENSVQEALDRVMVGRTTVVVAHRL-STIRNADVIAV-VQGRKIVKTGSHEE 604
SALD + + +++ ++ + T V+V H + R +D AV + G ++V+ ++
Sbjct: 207 PASALDPVATSKIEDLIEELAEEYTVVIVTHNMQQAARISDKTAVFLTGGELVEFDDTDK 266
Query: 605 LISNPNS 611
+ NP S
Sbjct: 267 IFENPES 273
|
Length = 285 |
| >gnl|CDD|188098 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Score = 130 bits (328), Expect = 2e-30
Identities = 74/230 (32%), Positives = 133/230 (57%), Gaps = 4/230 (1%)
Query: 379 SGHIEFKDVSFCYPSRPDV-AIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPL 437
G +EF++ +C R D+ + + I G+ V +VG +G+GKS++ + R E
Sbjct: 1282 RGRVEFRN--YCLRYREDLDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESA 1339
Query: 438 SGEILLDGNNIKGLDLKWLRQQIGLVNQEPALFATTIRENILYGKDDATMEEITRAAKLS 497
GEI++DG NI + L LR +I ++ Q+P LF+ ++R N L + EE+ A +L+
Sbjct: 1340 EGEIIIDGLNIAKIGLHDLRFKITIIPQDPVLFSGSLRMN-LDPFSQYSDEEVWWALELA 1398
Query: 498 EAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESEN 557
+F+S LP++ + + E G LS GQ+Q + ++RA+++ IL+LDEAT+A+D E++N
Sbjct: 1399 HLKTFVSALPDKLDHECAEGGENLSVGQRQLVCLARALLRKTKILVLDEATAAVDLETDN 1458
Query: 558 SVQEALDRVMVGRTTVVVAHRLSTIRNADVIAVVQGRKIVKTGSHEELIS 607
+Q + T + +AHRL+TI + + V+ ++ + G+ L+
Sbjct: 1459 LIQSTIRTQFEDCTVLTIAHRLNTIMDYTRVIVLDKGEVAEFGAPSNLLQ 1508
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved [Transport and binding proteins, Other]. Length = 1522 |
| >gnl|CDD|237645 PRK14235, PRK14235, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 120 bits (302), Expect = 4e-30
Identities = 83/262 (31%), Positives = 131/262 (50%), Gaps = 24/262 (9%)
Query: 363 TMSKASSKTGRKLDKLSGHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSG 422
+K + +DVS Y + A+FD LDIP + A +G SG G
Sbjct: 1 YEMADEKAADKKATATEIKMRARDVSVFYGEKQ--ALFD-VDLDIPEKTVTAFIGPSGCG 57
Query: 423 KSTVISLIERFYEPL-----SGEILLDGNNI--KGLDLKWLRQQIGLVNQEPALFATTIR 475
KST + + R + + +G+I LDG +I LD+ LR ++G+V Q+P F +I
Sbjct: 58 KSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRLDVVELRARVGMVFQKPNPFPKSIY 117
Query: 476 ENILYG-------KDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQR 528
EN+ YG + A ++EI + L +A L E + ++ E G LSGGQ+QR
Sbjct: 118 ENVAYGPRIHGLARSKAELDEIVETS-LRKA-----GLWEEVKDRLHEPGTGLSGGQQQR 171
Query: 529 IAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLS-TIRNADV 587
+ I+RAI +P ++L+DE SALD + V+E +D + T V+V H + R +
Sbjct: 172 LCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQNYTIVIVTHSMQQAARVSQR 231
Query: 588 IAVVQGRKIVKTGSHEELISNP 609
A +V+ G E++ +NP
Sbjct: 232 TAFFHLGNLVEVGDTEKMFTNP 253
|
Length = 267 |
| >gnl|CDD|181906 PRK09493, glnQ, glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 119 bits (300), Expect = 5e-30
Identities = 84/246 (34%), Positives = 125/246 (50%), Gaps = 34/246 (13%)
Query: 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEI 441
IEFK+VS + L+I G++V ++G SGSGKST++ I + E SG++
Sbjct: 2 IEFKNVS---KHFGPTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDL 58
Query: 442 LLDGNNIKG--LDLKWLRQQIGLVNQEPALFA-TTIRENILYGKDDATMEEITRAAKLSE 498
++DG + +D + +RQ+ G+V Q+ LF T EN+++G R A E
Sbjct: 59 IVDGLKVNDPKVDERLIRQEAGMVFQQFYLFPHLTALENVMFGPLR------VRGASKEE 112
Query: 499 AMSFISNLPERFETQVG--ERG----IQLSGGQKQRIAISRAIVKNPSILLLDEATSALD 552
A +VG ER +LSGGQ+QR+AI+RA+ P ++L DE TSALD
Sbjct: 113 A----EKQARELLAKVGLAERAHHYPSELSGGQQQRVAIARALAVKPKLMLFDEPTSALD 168
Query: 553 AESENSVQEALDRVMV-----GRTTVVVAHRLSTIRN--ADVIAVVQGRKIVKTGSHEEL 605
E E L +VM G T V+V H + + +I + +GR I + G + L
Sbjct: 169 PELR---HEVL-KVMQDLAEEGMTMVIVTHEIGFAEKVASRLIFIDKGR-IAEDGDPQVL 223
Query: 606 ISNPNS 611
I NP S
Sbjct: 224 IKNPPS 229
|
Length = 240 |
| >gnl|CDD|213255 cd03288, ABCC_SUR2, ATP-binding cassette domain 2 of the sulfonylurea receptor SUR | Back alignment and domain information |
|---|
Score = 119 bits (300), Expect = 5e-30
Identities = 76/243 (31%), Positives = 138/243 (56%), Gaps = 6/243 (2%)
Query: 378 LSGHIEFKDVSFCYPS--RPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYE 435
L G I+ D+ Y + +P + + I G+ V + G +GSGKS++ R +
Sbjct: 16 LGGEIKIHDLCVRYENNLKPVLKHVKAY---IKPGQKVGICGRTGSGKSSLSLAFFRMVD 72
Query: 436 PLSGEILLDGNNIKGLDLKWLRQQIGLVNQEPALFATTIRENILYGKDDATMEEITRAAK 495
G+I++DG +I L L LR ++ ++ Q+P LF+ +IR N L + T + + A +
Sbjct: 73 IFDGKIVIDGIDISKLPLHTLRSRLSIILQDPILFSGSIRFN-LDPECKCTDDRLWEALE 131
Query: 496 LSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAES 555
+++ + + +LP + V E G S GQ+Q ++RA V+ SIL++DEAT+++D +
Sbjct: 132 IAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFVRKSSILIMDEATASIDMAT 191
Query: 556 ENSVQEALDRVMVGRTTVVVAHRLSTIRNADVIAVVQGRKIVKTGSHEELISNPNSAYAA 615
EN +Q+ + RT V +AHR+STI +AD++ V+ +V+ + E L++ + +A+
Sbjct: 192 ENILQKVVMTAFADRTVVTIAHRVSTILDADLVLVLSRGILVECDTPENLLAQEDGVFAS 251
Query: 616 LVQ 618
LV+
Sbjct: 252 LVR 254
|
The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 257 |
| >gnl|CDD|172750 PRK14262, PRK14262, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 118 bits (298), Expect = 8e-30
Identities = 71/244 (29%), Positives = 128/244 (52%), Gaps = 23/244 (9%)
Query: 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPL---- 437
IE ++ S Y + V + I +I A++G SG GK+T++ I R + +
Sbjct: 4 IEIENFSAYYGEKKAV---KNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFR 60
Query: 438 -SGEILLDGNNI--KGLDLKWLRQQIGLVNQEPALFATTIRENILYG------KDDATME 488
G+I G +I LD+ R+++G+V Q+P F +I +N+ +G K ++
Sbjct: 61 VEGKIYFKGQDIYDPQLDVTEYRKKVGMVFQKPTPFPMSIYDNVAFGPRIHGVKSKHKLD 120
Query: 489 EITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEAT 548
I + L +A L + ++++ + G +LSGGQ+QR+ I+RA+ P ++LLDE T
Sbjct: 121 RIVEES-LKKAA-----LWDEVKSELNKPGTRLSGGQQQRLCIARALAVEPEVILLDEPT 174
Query: 549 SALDAESENSVQEALDRVMVGRTTVVVAHRLS-TIRNADVIAVVQGRKIVKTGSHEELIS 607
SALD + +++ L+ + T V+V H + IR AD IA + ++++ G E++
Sbjct: 175 SALDPIATQRIEKLLEELSENYTIVIVTHNIGQAIRIADYIAFMYRGELIEYGPTREIVE 234
Query: 608 NPNS 611
P +
Sbjct: 235 RPKN 238
|
Length = 250 |
| >gnl|CDD|184597 PRK14270, PRK14270, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 118 bits (298), Expect = 9e-30
Identities = 75/242 (30%), Positives = 125/242 (51%), Gaps = 23/242 (9%)
Query: 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYE-----P 436
+E K+++ Y + A+ D L I KI AL+G SG GKST + + R +
Sbjct: 5 MESKNLNLWYGEKQ--ALND-INLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVK 61
Query: 437 LSGEILLDGNNI--KGLDLKWLRQQIGLVNQEPALFATTIRENILYG------KDDATME 488
+ GE+LLDG NI K +D+ LR+++G+V Q+P F +I +N+ YG KD ++
Sbjct: 62 IEGEVLLDGKNIYDKDVDVVELRKRVGMVFQKPNPFPMSIYDNVAYGPRIHGIKDKKELD 121
Query: 489 EITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEAT 548
+I A A L + + + + ++LSGGQ+QR+ I+R I P ++L+DE T
Sbjct: 122 KIVEWALKKAA------LWDEVKDDLKKSALKLSGGQQQRLCIARTIAVKPDVILMDEPT 175
Query: 549 SALDAESENSVQEALDRVMVGRTTVVVAHRLSTI-RNADVIAVVQGRKIVKTGSHEELIS 607
SALD S +++ + + T V+V H + R +D A +++ E++
Sbjct: 176 SALDPISTLKIEDLMVELKKEYTIVIVTHNMQQASRVSDYTAFFLMGDLIEFNKTEKIFL 235
Query: 608 NP 609
P
Sbjct: 236 EP 237
|
Length = 251 |
| >gnl|CDD|226360 COG3840, ThiQ, ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 118 bits (297), Expect = 9e-30
Identities = 80/250 (32%), Positives = 117/250 (46%), Gaps = 38/250 (15%)
Query: 382 IEFKDVSFCYPSRPDVAIFDKFCLD--IPAGKIVALVGGSGSGKSTVISLIERFYEPLSG 439
+ DV F Y P D +PAG+IVA++G SG+GKST+++LI F P SG
Sbjct: 2 LALDDVRFSYGHLP-------MRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASG 54
Query: 440 EILLDGNNIKGLDLKWLRQQIGLVNQEPALFA-TTIRENILYGKDDA---TMEEITRAAK 495
EIL++G + + + ++ QE LFA T+ +NI G E+ +
Sbjct: 55 EILINGVDHTASPPA--ERPVSMLFQENNLFAHLTVAQNIGLGLSPGLKLNAEQREKVEA 112
Query: 496 LSEAM---SFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALD 552
+ + F+ LP +LSGGQ+QR+A++R +V+ ILLLDE SALD
Sbjct: 113 AAAQVGLAGFLKRLPG-----------ELSGGQRQRVALARCLVREQPILLLDEPFSALD 161
Query: 553 AESENSVQEALDRVM-----VGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELI 606
E L V T ++V H AD + + +I GS +EL+
Sbjct: 162 PALR---AEMLALVSQLCDERKMTLLMVTHHPEDAARIADRVVFLDNGRIAAQGSTQELL 218
Query: 607 SNPNSAYAAL 616
S SA A L
Sbjct: 219 SGKASAAALL 228
|
Length = 231 |
| >gnl|CDD|237452 PRK13632, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 118 bits (299), Expect = 1e-29
Identities = 70/237 (29%), Positives = 124/237 (52%), Gaps = 22/237 (9%)
Query: 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEI 441
I+ ++VSF YP+ + A+ +I G+ VA++G +GSGKST+ ++ +P SGEI
Sbjct: 8 IKVENVSFSYPNSENNAL-KNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEI 66
Query: 442 LLDGNNIKGLDLKWLRQQIGLVNQEP--ALFATTIRENILYG-----KDDATMEE-ITRA 493
+DG I +LK +R++IG++ Q P T+ ++I +G M++ I
Sbjct: 67 KIDGITISKENLKEIRKKIGIIFQNPDNQFIGATVEDDIAFGLENKKVPPKKMKDIIDDL 126
Query: 494 AKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDA 553
AK ++ P+ LSGGQKQR+AI+ + NP I++ DE+TS LD
Sbjct: 127 AKKVGMEDYLDKEPQ-----------NLSGGQKQRVAIASVLALNPEIIIFDESTSMLDP 175
Query: 554 ESENSVQEALD--RVMVGRTTVVVAHRLSTIRNADVIAVVQGRKIVKTGSHEELISN 608
+ + +++ + R +T + + H + AD + V K++ G +E+++N
Sbjct: 176 KGKREIKKIMVDLRKTRKKTLISITHDMDEAILADKVIVFSEGKLIAQGKPKEILNN 232
|
Length = 271 |
| >gnl|CDD|188353 TIGR03608, L_ocin_972_ABC, putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Score = 116 bits (293), Expect = 2e-29
Identities = 63/202 (31%), Positives = 110/202 (54%), Gaps = 17/202 (8%)
Query: 396 DVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLD--- 452
D I D L I GK+ A++G SGSGKST++++I + SG++ L+G L+
Sbjct: 10 DKVILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGQETPPLNSKK 69
Query: 453 -LKWLRQQIGLVNQEPALFAT-TIRENI---LYGKDDATMEEITRAAKLSEAMSFISNLP 507
K+ R+++G + Q AL T+ EN+ L K + E+ + + E + L
Sbjct: 70 ASKFRREKLGYLFQNFALIENETVEENLDLGLKYKKLSKKEKREKKKEALEKV----GLN 125
Query: 508 ERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEAL-DRV 566
+ + ++ E LSGG++QR+A++RAI+K P ++L DE T +LD ++ + V + L +
Sbjct: 126 LKLKQKIYE----LSGGEQQRVALARAILKPPPLILADEPTGSLDPKNRDEVLDLLLELN 181
Query: 567 MVGRTTVVVAHRLSTIRNADVI 588
G+T ++V H + AD +
Sbjct: 182 DEGKTIIIVTHDPEVAKQADRV 203
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins [Cellular processes, Toxin production and resistance, Transport and binding proteins, Unknown substrate]. Length = 206 |
| >gnl|CDD|213268 cd03301, ABC_MalK_N, The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Score = 116 bits (293), Expect = 2e-29
Identities = 75/229 (32%), Positives = 119/229 (51%), Gaps = 26/229 (11%)
Query: 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEI 441
+E ++V+ + + + D LDI G+ V L+G SG GK+T + +I EP SG I
Sbjct: 1 VELENVTKRFGNVTAL---DDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRI 57
Query: 442 LLDGNNIKGLDLKWLRQQIGLVNQEPALFA-TTIRENILYG------KDDATMEEITRAA 494
+ G ++ L K + I +V Q AL+ T+ +NI +G D E + A
Sbjct: 58 YIGGRDVTDLPPK--DRDIAMVFQNYALYPHMTVYDNIAFGLKLRKVPKDEIDERVREVA 115
Query: 495 KLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAE 554
+L + I +L +R Q LSGGQ+QR+A+ RAIV+ P + L+DE S LDA+
Sbjct: 116 ELLQ----IEHLLDRKPKQ-------LSGGQRQRVALGRAIVREPKVFLMDEPLSNLDAK 164
Query: 555 SENSVQEALDRVM--VGRTTVVVAH-RLSTIRNADVIAVVQGRKIVKTG 600
++ L R+ +G TT+ V H ++ + AD IAV+ +I + G
Sbjct: 165 LRVQMRAELKRLQQRLGTTTIYVTHDQVEAMTMADRIAVMNDGQIQQIG 213
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. Length = 213 |
| >gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Score = 124 bits (312), Expect = 3e-29
Identities = 88/409 (21%), Positives = 166/409 (40%), Gaps = 44/409 (10%)
Query: 686 KLYSMVRPDWTYGVCGTICAIIAGAQMPLFALGVSQALVAYYMDWDTTQREVKKITILFC 745
+L+S VRP V + I+ A A AL+ +D R+ + +
Sbjct: 4 RLWSYVRPYKAGLVLAGVAMILVAATESTLA-----ALLKPLLDDGFGGRDRSVL--WWV 56
Query: 746 CAAVITVIV-----HAIEHLSFGIMGERLTLRVREKMFSAILSNEIGWFDEMDNSSSILA 800
VI + V + + ++ +R +MF +L + +FD + L
Sbjct: 57 PLVVIGLAVLRGICSFVSTYLLSWVSNKVVRDIRVRMFEKLLGLPVSFFDR--QPTGTLL 114
Query: 801 SRLESDATLLRTIVVDRSTILIQNFGLVTASFVIAFILNWRITLVVVATYPLI--ISGHI 858
SR+ D+ + + D +L++ V F++ +W++TL+VV P++ + +
Sbjct: 115 SRITFDSEQVASAATDAFIVLVRETLTVIGLFIVLLYYSWQLTLIVVVMLPVLSILMRRV 174
Query: 859 SEKLFFQGYGGNLSKAYLKANMLAAEAVSNIRTVAAFCSEDKVLELY---SRELVEPSKR 915
S++ + + + + +A E + R V F + + S + +
Sbjct: 175 SKR--LRRISKEIQNSMGQVTTVAEETLQGYRVVKLFGGQAYETRRFDAVSNRNRRLAMK 232
Query: 916 SFIRGQIAGIFYGISQFFIFSSYGLALWYGSVLMGKELASFKSVMKS-----FMVLIVTA 970
I I+Q + + L+ +A F++ S F I
Sbjct: 233 M---TSAGSISSPITQLIASLALAVVLF---------IALFQAQAGSLTAGDFTAFITAM 280
Query: 971 LAMGETLALVPD----LLKGNQMAASVFEVLDRKTQVIGDIGEELTNVEGTIELRGVHFS 1026
+A+ L + + + +G A S+F +LD + G +E R V F
Sbjct: 281 IALIRPLKSLTNVNAPMQRGLAAAESLFTLLD-SPPEKDTGTRAIERARGDVEFRNVTFR 339
Query: 1027 YPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAG 1075
YP R + +L + G+++ALVG+SGSGKST+++LI RFY+P +G
Sbjct: 340 YPGR-DRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSG 387
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]. Length = 571 |
| >gnl|CDD|172732 PRK14244, PRK14244, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 117 bits (294), Expect = 3e-29
Identities = 74/246 (30%), Positives = 127/246 (51%), Gaps = 24/246 (9%)
Query: 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERF--YEP-- 436
H K+++ Y S+ +FD LDI ++ A +G SG GKST + R + P
Sbjct: 5 HASVKNLNLWYGSKQ--ILFD-INLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNC 61
Query: 437 -LSGEILLDGNNI--KGLDLKWLRQQIGLVNQEPALFATTIRENILYG-------KDDAT 486
+ GE+ +DG ++ ++ LR ++G+V Q+P F +I +N+ YG K+
Sbjct: 62 KVKGELDIDGIDVYSVDTNVVLLRAKVGMVFQKPNPFPKSIYDNVAYGPKLHGLAKNKKK 121
Query: 487 MEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDE 546
++EI + S L E ++ + +LSGGQ+QR+ I+RAI P++LL+DE
Sbjct: 122 LDEIVEKSLTS------VGLWEELGDRLKDSAFELSGGQQQRLCIARAIAVKPTMLLMDE 175
Query: 547 ATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEEL 605
SALD + N ++ + + T +VV H + + +D +A Q +IV+ + +E+
Sbjct: 176 PCSALDPVATNVIENLIQELKKNFTIIVVTHSMKQAKKVSDRVAFFQSGRIVEYNTTQEI 235
Query: 606 ISNPNS 611
NP S
Sbjct: 236 FKNPQS 241
|
Length = 251 |
| >gnl|CDD|131367 TIGR02314, ABC_MetN, D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 119 bits (300), Expect = 4e-29
Identities = 80/266 (30%), Positives = 141/266 (53%), Gaps = 38/266 (14%)
Query: 358 MIERDTMSKASSKTGRKLDKLSGHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVG 417
MI+ ++K + + + L +VS L +PAG+I ++G
Sbjct: 1 MIKLSNITKVFHQGTKTIQAL------NNVS----------------LHVPAGQIYGVIG 38
Query: 418 GSGSGKSTVISLIERFYEPLSGEILLDGNNIKGL---DLKWLRQQIGLVNQEPALFAT-T 473
SG+GKST+I + P SG +++DG ++ L +L R+QIG++ Q L ++ T
Sbjct: 39 ASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKARRQIGMIFQHFNLLSSRT 98
Query: 474 IRENILY--GKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAI 531
+ N+ D+ +EI R K++E ++ + L ++ ++ LSGGQKQR+AI
Sbjct: 99 VFGNVALPLELDNTPKDEIKR--KVTELLALVG-LGDKHDSYPS----NLSGGQKQRVAI 151
Query: 532 SRAIVKNPSILLLDEATSALDAESENSVQEALDRV--MVGRTTVVVAHRLSTI-RNADVI 588
+RA+ NP +LL DEATSALD + S+ E L + +G T +++ H + + R D +
Sbjct: 152 ARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMDVVKRICDCV 211
Query: 589 AVVQGRKIVKTGSHEELISNPNSAYA 614
AV+ ++++ G+ E+ S+P + A
Sbjct: 212 AVISNGELIEQGTVSEIFSHPKTPLA 237
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. Length = 343 |
| >gnl|CDD|183226 PRK11607, potG, putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 119 bits (299), Expect = 1e-28
Identities = 81/260 (31%), Positives = 143/260 (55%), Gaps = 21/260 (8%)
Query: 362 DTMSKASSKTGRKLDKLSGHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGS 421
D + + +KT + L L +E ++++ + + V D L I G+I AL+G SG
Sbjct: 3 DAIPRPQAKTRKALTPL---LEIRNLTKSFDGQHAV---DDVSLTIYKGEIFALLGASGC 56
Query: 422 GKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIGLVNQEPALFA-TTIRENILY 480
GKST++ ++ F +P +G+I+LDG ++ + ++ I ++ Q ALF T+ +NI +
Sbjct: 57 GKSTLLRMLAGFEQPTAGQIMLDGVDLS--HVPPYQRPINMMFQSYALFPHMTVEQNIAF 114
Query: 481 G--KDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKN 538
G +D EI ++++E + + + + QLSGGQ+QR+A++R++ K
Sbjct: 115 GLKQDKLPKAEIA--SRVNEMLGLV-----HMQEFAKRKPHQLSGGQRQRVALARSLAKR 167
Query: 539 PSILLLDEATSALDAESENSVQ-EALDRV-MVGRTTVVVAH-RLSTIRNADVIAVVQGRK 595
P +LLLDE ALD + + +Q E +D + VG T V+V H + + A IA++ K
Sbjct: 168 PKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQEEAMTMAGRIAIMNRGK 227
Query: 596 IVKTGSHEELISNPNSAYAA 615
V+ G EE+ +P + Y+A
Sbjct: 228 FVQIGEPEEIYEHPTTRYSA 247
|
Length = 377 |
| >gnl|CDD|172730 PRK14242, PRK14242, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 115 bits (289), Expect = 1e-28
Identities = 72/219 (32%), Positives = 117/219 (53%), Gaps = 20/219 (9%)
Query: 405 LDIPAGKIVALVGGSGSGKSTVISLIERFYE--PLS---GEILLDGNNI--KGLDLKWLR 457
L+ ++ AL+G SG GKST + + R + P + GEILLDG NI +D+ LR
Sbjct: 27 LEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVDVVELR 86
Query: 458 QQIGLVNQEPALFATTIRENILYG------KDDATMEEITRAAKLSEAMSFISNLPERFE 511
+++G+V Q+P F +I EN+ YG KD A + E + A L + +
Sbjct: 87 RRVGMVFQKPNPFPKSIFENVAYGLRVNGVKDKAYLAERVERSLRHAA------LWDEVK 140
Query: 512 TQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRT 571
++ E + LSGGQ+QR+ I+RA+ P +LL+DE SALD + ++E + + T
Sbjct: 141 DRLHESALGLSGGQQQRLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELKARYT 200
Query: 572 TVVVAHRL-STIRNADVIAVVQGRKIVKTGSHEELISNP 609
++V H + R +DV A K+++ G E++ + P
Sbjct: 201 IIIVTHNMQQAARVSDVTAFFYMGKLIEVGPTEQIFTRP 239
|
Length = 253 |
| >gnl|CDD|172733 PRK14245, PRK14245, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 115 bits (288), Expect = 1e-28
Identities = 79/242 (32%), Positives = 127/242 (52%), Gaps = 23/242 (9%)
Query: 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYE-----P 436
I+ +DV+F Y D ++I +VA +G SG GKST + L R +
Sbjct: 4 IDARDVNFWYG---DFHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATR 60
Query: 437 LSGEILLDGNNI--KGLDLKWLRQQIGLVNQEPALFATTIRENILYG------KDDATME 488
L GEI +DG NI KG+ + LR+ +G+V Q P F +I EN+ YG KD+A +
Sbjct: 61 LEGEIRIDGRNIYDKGVQVDELRKNVGMVFQRPNPFPKSIFENVAYGLRVNGVKDNAFIR 120
Query: 489 EITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEAT 548
+ ++ E + + L + + ++ E LSGGQ+QR+ I+RA+ +PS+LL+DE
Sbjct: 121 Q-----RVEETLKGAA-LWDEVKDKLKESAFALSGGQQQRLCIARAMAVSPSVLLMDEPA 174
Query: 549 SALDAESENSVQEALDRVMVGRTTVVVAHRL-STIRNADVIAVVQGRKIVKTGSHEELIS 607
SALD S V+E + + T V+V H + R +D A ++V+ +++ +
Sbjct: 175 SALDPISTAKVEELIHELKKDYTIVIVTHNMQQAARVSDKTAFFYMGEMVEYDDTKKIFT 234
Query: 608 NP 609
NP
Sbjct: 235 NP 236
|
Length = 250 |
| >gnl|CDD|130234 TIGR01166, cbiO, cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Score = 113 bits (284), Expect = 2e-28
Identities = 65/194 (33%), Positives = 104/194 (53%), Gaps = 19/194 (9%)
Query: 391 YPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNI-- 448
YP P+V G+++AL+G +G+GKST++ + P SG +L+DG +
Sbjct: 1 YPGGPEV--LKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDY 58
Query: 449 --KGLDLKWLRQQIGLVNQEP--ALFATTIRENILYGKDDATMEEITRAAKLSEAMSF-- 502
KGL L+ RQ++GLV Q+P LFA + +++ +G + + E ++ EA++
Sbjct: 59 SRKGL-LER-RQRVGLVFQDPDDQLFAADVDQDVAFGPLNLGLSEAEVERRVREALTAVG 116
Query: 503 ISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEA 562
S L ER T LSGG+K+R+AI+ A+ P +LLLDE T+ LD +
Sbjct: 117 ASGLRER-PTH------CLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGREQMLAI 169
Query: 563 LDRVMVGRTTVVVA 576
L R+ TVV++
Sbjct: 170 LRRLRAEGMTVVIS 183
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux [Transport and binding proteins, Cations and iron carrying compounds]. Length = 190 |
| >gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 114 bits (287), Expect = 2e-28
Identities = 79/249 (31%), Positives = 127/249 (51%), Gaps = 42/249 (16%)
Query: 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEI 441
+E +++S YP+ L+I G+ VA++G SG+GKST++ I R EP SG I
Sbjct: 2 LEVENLSKVYPN--GKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSI 59
Query: 442 LLDGNNI---KGLDLKWLRQQIGLVNQEPALFA-TTIRENILYGKDDATMEEITRAAKLS 497
LL+G +I +G L+ LR++IG++ Q L T+ EN+L+G R
Sbjct: 60 LLEGTDITKLRGKKLRKLRRRIGMIFQHYNLIERLTVLENVLHG----------RLG--- 106
Query: 498 EAMSFISNLPERFE-----------TQVG------ERGIQLSGGQKQRIAISRAIVKNPS 540
+L RF +VG +R QLSGGQ+QR+AI+RA+ + P
Sbjct: 107 -YKPTWRSLLGRFSEEDKERALSALERVGLADKAYQRADQLSGGQQQRVAIARALAQQPD 165
Query: 541 ILLLDEATSALDAESENSVQEALDRVMV--GRTTVVVAHRLSTIRN-AD-VIAVVQGRKI 596
++L DE ++LD ++ V + L R+ G T ++ H++ + AD ++ + G I
Sbjct: 166 LILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVDLAKKYADRIVGLKAGE-I 224
Query: 597 VKTGSHEEL 605
V G+ EL
Sbjct: 225 VFDGAPSEL 233
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates [Transport and binding proteins, Anions]. Length = 243 |
| >gnl|CDD|184207 PRK13648, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 114 bits (288), Expect = 3e-28
Identities = 71/232 (30%), Positives = 120/232 (51%), Gaps = 14/232 (6%)
Query: 382 IEFKDVSFCYPSRPDVAI-FDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGE 440
I FK+VSF Y S D + +IP G+ ++VG +GSGKST+ L+ + SGE
Sbjct: 8 IVFKNVSFQYQS--DASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGE 65
Query: 441 ILLDGNNIKGLDLKWLRQQIGLVNQEP--ALFATTIRENILYGKDDATMEEITRAAKLSE 498
I + I + + LR+ IG+V Q P + ++ ++ +G ++ + ++SE
Sbjct: 66 IFYNNQAITDDNFEKLRKHIGIVFQNPDNQFVGSIVKYDVAFGLENHAVPYDEMHRRVSE 125
Query: 499 AMSFISNLPER-FETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESEN 557
A+ + L +E LSGGQKQR+AI+ + NPS+++LDEATS LD ++
Sbjct: 126 ALKQVDMLERADYEPN------ALSGGQKQRVAIAGVLALNPSVIILDEATSMLDPDARQ 179
Query: 558 SVQEALDRVMVGR--TTVVVAHRLSTIRNADVIAVVQGRKIVKTGSHEELIS 607
++ + + +V T + + H LS AD + V+ + K G+ E+
Sbjct: 180 NLLDLVRKVKSEHNITIISITHDLSEAMEADHVIVMNKGTVYKEGTPTEIFD 231
|
Length = 269 |
| >gnl|CDD|213216 cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins | Back alignment and domain information |
|---|
Score = 113 bits (285), Expect = 4e-28
Identities = 35/59 (59%), Positives = 45/59 (76%)
Query: 1018 IELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGK 1076
IE + V F YPSRP+V I K +L + GK++ALVG SG GKSTV+SL+ RFYDPT+G+
Sbjct: 1 IEFKNVSFRYPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGE 59
|
MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. Length = 238 |
| >gnl|CDD|184587 PRK14241, PRK14241, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 114 bits (286), Expect = 4e-28
Identities = 73/231 (31%), Positives = 119/231 (51%), Gaps = 35/231 (15%)
Query: 405 LDIPAGKIVALVGGSGSGKSTVISLIERFYEPL-----SGEILLDGNNI--KGLDLKWLR 457
L+I + A +G SG GKSTV+ + R +E + GE+LLDG ++ G+D +R
Sbjct: 25 LNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDPVAVR 84
Query: 458 QQIGLVNQEPALFAT-TIRENILYG----------KDDATMEEITRAAKLSEAMSFISNL 506
+ IG+V Q P F T +IR+N++ G D +E+ R A NL
Sbjct: 85 RTIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGA----------NL 134
Query: 507 PERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRV 566
+ ++ + G LSGGQ+QR+ I+RAI P +LL+DE SALD S ++++ ++ +
Sbjct: 135 WNEVKDRLDKPGGGLSGGQQQRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINEL 194
Query: 567 MVGRTTVVVAHRL-STIRNAD------VIAVVQGRKIVKTGSHEELISNPN 610
T V+V H + R +D + A + ++V+ E++ SNP
Sbjct: 195 KQDYTIVIVTHNMQQAARVSDQTAFFNLEATGKPGRLVEIDDTEKIFSNPT 245
|
Length = 258 |
| >gnl|CDD|213202 cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the metal-type transporters | Back alignment and domain information |
|---|
Score = 112 bits (283), Expect = 5e-28
Identities = 62/231 (26%), Positives = 115/231 (49%), Gaps = 38/231 (16%)
Query: 383 EFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEIL 442
E +D++ Y P + + ++ G+ +A+VG +G+GKST++ I +P SG I
Sbjct: 1 EVEDLTVSYGGHP---VLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIR 57
Query: 443 LDGNNIKGLDLKWLRQQIGLVNQEPAL---FATTIRENIL------------YGKDDATM 487
+ G ++ R++IG V Q ++ F ++R+ +L K D
Sbjct: 58 VFGKPLEKE-----RKRIGYVPQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKAD--K 110
Query: 488 EEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEA 547
++ A + +S L +R Q+GE LSGGQ+QR+ ++RA+V++P +LLLDE
Sbjct: 111 AKVDEALERVG----LSELADR---QIGE----LSGGQQQRVLLARALVQDPDLLLLDEP 159
Query: 548 TSALDAESENSVQEALDRV-MVGRTTVVVAHRLSTI-RNADVIAVVQGRKI 596
+ +D +++ + E L + G T +VV H L + D + ++ +
Sbjct: 160 FAGVDPKTQEDIYELLRELRREGMTILVVTHDLGLVLEYFDRVLLLNRTVV 210
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. Length = 213 |
| >gnl|CDD|234152 TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 115 bits (291), Expect = 7e-28
Identities = 73/222 (32%), Positives = 115/222 (51%), Gaps = 25/222 (11%)
Query: 405 LDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIGLVN 464
L + G+ V L+G SG GK+T++ +I +G I G +I L + ++ G+V
Sbjct: 25 LSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQ--KRDYGIVF 82
Query: 465 QEPALFAT-TIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSG 523
Q ALF T+ +NI YG + M A +++E + + LP + QLSG
Sbjct: 83 QSYALFPNLTVADNIAYGLKNRGMGRAEVAERVAELLDLV-GLP----GSERKYPGQLSG 137
Query: 524 GQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVM------VGRTTVVVAH 577
GQ+QR+A++RA+ +P +LLLDE SALDA V+E L + +G TT++V H
Sbjct: 138 GQQQRVALARALATSPGLLLLDEPLSALDAR----VREHLRTEIRQLQRRLGVTTIMVTH 193
Query: 578 ----RLSTIRNADVIAVVQGRKIVKTGSHEELISNPNSAYAA 615
LS AD I V+ I + G+ +E+ +P + + A
Sbjct: 194 DQEEALSM---ADRIVVMNHGVIEQVGTPQEIYRHPATPFVA 232
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely [Transport and binding proteins, Amino acids, peptides and amines]. Length = 353 |
| >gnl|CDD|236523 PRK09452, potA, putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Score = 116 bits (292), Expect = 8e-28
Identities = 79/244 (32%), Positives = 124/244 (50%), Gaps = 26/244 (10%)
Query: 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEI 441
+E + +S + + + L I G+ + L+G SG GK+TV+ LI F P SG I
Sbjct: 15 VELRGISKSFDGKE---VISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRI 71
Query: 442 LLDGNNIKGLDLKWLRQQIGLVNQEPALFA-TTIRENILYGKDDATM-----EEITRAAK 495
+LDG +I + + + + V Q ALF T+ EN+ +G M EIT
Sbjct: 72 MLDGQDITHVPAE--NRHVNTVFQSYALFPHMTVFENVAFG---LRMQKTPAAEITPRVM 126
Query: 496 LSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAES 555
+ M + +R + QLSGGQ+QR+AI+RA+V P +LLLDE+ SALD +
Sbjct: 127 EALRMVQLEEFAQR-------KPHQLSGGQQQRVAIARAVVNKPKVLLLDESLSALDYKL 179
Query: 556 ENSVQ---EALDRVMVGRTTVVVAH-RLSTIRNADVIAVVQGRKIVKTGSHEELISNPNS 611
+Q +AL R + G T V V H + + +D I V++ +I + G+ E+ P +
Sbjct: 180 RKQMQNELKALQRKL-GITFVFVTHDQEEALTMSDRIVVMRDGRIEQDGTPREIYEEPKN 238
Query: 612 AYAA 615
+ A
Sbjct: 239 LFVA 242
|
Length = 375 |
| >gnl|CDD|131197 TIGR02142, modC_ABC, molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 115 bits (291), Expect = 9e-28
Identities = 74/226 (32%), Positives = 119/226 (52%), Gaps = 21/226 (9%)
Query: 403 FCLD----IPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNI----KGLDLK 454
F LD +P + A+ G SGSGK+T+I LI P GEI+L+G + KG+ L
Sbjct: 12 FSLDADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLP 71
Query: 455 WLRQQIGLVNQEPALFA-TTIRENILYGKDDATMEE-ITRAAKLSEAMSFISNLPERFET 512
+++IG V QE LF ++R N+ YG A E ++ E + I +L R
Sbjct: 72 PEKRRIGYVFQEARLFPHLSVRGNLRYGMKRARPSERRISFERVIELLG-IGHLLGRLPG 130
Query: 513 QVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVM--VGR 570
+ LSGG+KQR+AI RA++ +P +LL+DE +ALD + + L+R+ G
Sbjct: 131 R-------LSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEILPYLERLHAEFGI 183
Query: 571 TTVVVAHRLSTI-RNADVIAVVQGRKIVKTGSHEELISNPNSAYAA 615
+ V+H L + R AD + V++ ++ G E+ ++P+ + A
Sbjct: 184 PILYVSHSLQEVLRLADRVVVLEDGRVAAAGPIAEVWASPDLPWLA 229
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter [Transport and binding proteins, Anions]. Length = 354 |
| >gnl|CDD|131721 TIGR02673, FtsE, cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Score = 111 bits (280), Expect = 1e-27
Identities = 76/229 (33%), Positives = 112/229 (48%), Gaps = 32/229 (13%)
Query: 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEI 441
IEF +VS YP VA L I G+ + L G SG+GK+T++ L+ P G++
Sbjct: 2 IEFHNVSKAYP--GGVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQV 59
Query: 442 LLDGNNI---KGLDLKWLRQQIGLVNQEPALFAT-TIRENI-----LYGKDDA----TME 488
+ G ++ +G L LR++IG+V Q+ L T+ EN+ + GK + +
Sbjct: 60 RIAGEDVNRLRGRQLPLLRRRIGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRRVG 119
Query: 489 EITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEAT 548
R L PE QLSGG++QR+AI+RAIV +P +LL DE T
Sbjct: 120 AALRQVGLEHKAD---AFPE-----------QLSGGEQQRVAIARAIVNSPPLLLADEPT 165
Query: 549 SALDAESENSVQEALDRVMVGRTTVVVA-HRLSTIRN--ADVIAVVQGR 594
LD + + + L R+ TTV+VA H LS + VI + GR
Sbjct: 166 GNLDPDLSERILDLLKRLNKRGTTVIVATHDLSLVDRVAHRVIILDDGR 214
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein [Cellular processes, Cell division]. Length = 214 |
| >gnl|CDD|223521 COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 114 bits (288), Expect = 1e-27
Identities = 69/233 (29%), Positives = 112/233 (48%), Gaps = 31/233 (13%)
Query: 405 LDIPAGKIVALVGGSGSGKSTVISLIERFYEP-----LSGEILLDGNNIKGLDLKWLRQ- 458
++ G+I+ +VG SGSGKS + I + GEIL DG ++ L K LR+
Sbjct: 26 FELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKELRKI 85
Query: 459 ---QIGLVNQEP--AL---------FATTIRENILYGKDDATMEEITRAAKLSEAMSFIS 504
+I ++ Q+P +L A +R + GK + E RA +L E + I
Sbjct: 86 RGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLH---GKGLSKKEAKERAIELLELVG-IP 141
Query: 505 NLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALD 564
+ R + +LSGG +QR+ I+ A+ NP +L+ DE T+ALD + + + L
Sbjct: 142 DPERRLK----SYPHELSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLK 197
Query: 565 RVM--VGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELISNPNSAYA 614
+ G +++ H L + AD +AV+ +IV+ G EE+ NP Y
Sbjct: 198 ELQREKGTALILITHDLGVVAEIADRVAVMYAGRIVEEGPVEEIFKNPKHPYT 250
|
Length = 316 |
| >gnl|CDD|213264 cd03297, ABC_ModC_molybdenum_transporter, ATP-binding cassette domain of the molybdenum transport system | Back alignment and domain information |
|---|
Score = 111 bits (279), Expect = 1e-27
Identities = 65/214 (30%), Positives = 105/214 (49%), Gaps = 22/214 (10%)
Query: 400 FDKFCLDIP---AGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDG----NNIKGLD 452
F L I ++ + G SG+GKST++ I +P G I+L+G ++ K ++
Sbjct: 10 LPDFTLKIDFDLNEEVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKIN 69
Query: 453 LKWLRQQIGLVNQEPALFA-TTIRENILYG-KDDATMEEITRAAKLSEAMSFISNLPERF 510
L +++IGLV Q+ ALF +REN+ +G K E+ +L + +
Sbjct: 70 LPPQQRKIGLVFQQYALFPHLNVRENLAFGLKRKRNREDRISVDELLDLLGL-------- 121
Query: 511 ETQVGERGI-QLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVM-- 567
+ R QLSGG+KQR+A++RA+ P +LLLDE SALD + L ++
Sbjct: 122 -DHLLNRYPAQLSGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLPELKQIKKN 180
Query: 568 VGRTTVVVAHRLSTI-RNADVIAVVQGRKIVKTG 600
+ + V H LS AD I V++ ++ G
Sbjct: 181 LNIPVIFVTHDLSEAEYLADRIVVMEDGRLQYIG 214
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 214 |
| >gnl|CDD|224046 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 112 bits (283), Expect = 1e-27
Identities = 73/248 (29%), Positives = 127/248 (51%), Gaps = 41/248 (16%)
Query: 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEI 441
IE ++++ Y +RP + + L + G+I AL+G +G+GKST++ I +P SGEI
Sbjct: 5 IEVENLTVSYGNRP---VLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEI 61
Query: 442 LLDGNNIKGLDLKWLRQQIGLVNQEPAL---FATTIRENIL------------YGKDDAT 486
+ G ++ K LR IG V Q+ ++ F T+++ +L K D
Sbjct: 62 KIFGKPVRKR-RKRLR--IGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDK- 117
Query: 487 MEEITRAAKLSEAMSF--ISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLL 544
K+ EA+ + +L +R Q+GE LSGGQKQR+ ++RA+ +NP +LLL
Sbjct: 118 -------EKVDEALERVGMEDLRDR---QIGE----LSGGQKQRVLLARALAQNPDLLLL 163
Query: 545 DEATSALDAESENSVQEALDR-VMVGRTTVVVAHRLST-IRNADVIAVVQGRKIVKTGSH 602
DE + +D + + + L G+T ++V H L + D + + R ++ +G
Sbjct: 164 DEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLGLVMAYFDRVICLN-RHLIASGPP 222
Query: 603 EELISNPN 610
EE+++ N
Sbjct: 223 EEVLTEEN 230
|
Length = 254 |
| >gnl|CDD|184594 PRK14264, PRK14264, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 113 bits (285), Expect = 2e-27
Identities = 71/233 (30%), Positives = 120/233 (51%), Gaps = 31/233 (13%)
Query: 405 LDIPAGKIVALVGGSGSGKSTVISLIERFYEPLS-----GEILLDGNNI--KGLDLKWLR 457
+DIP + AL+G SG GKST + + R + + G + LDG +I G++L LR
Sbjct: 66 MDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVNLVELR 125
Query: 458 QQIGLVNQEPALFATTIRENILYG-----------------KDDATMEEITRAAKLSEAM 500
+++G+V Q P F +IRENI YG +DD E+ L +A
Sbjct: 126 KRVGMVFQSPNPFPKSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAA 185
Query: 501 SFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQ 560
L + ++ + + LSGGQ+QR+ I+R + +P ++L+DE SALD + + ++
Sbjct: 186 -----LWDEVNDRLDDNALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIE 240
Query: 561 EALDRVMVGRTTVVVAHRL-STIRNADVIAV-VQGRKIVKTGSHEELISNPNS 611
+ ++ + T VVV H + R +D AV + G ++V+ +++ NP S
Sbjct: 241 DLIEELAEEYTVVVVTHNMQQAARISDQTAVFLTGGELVEYDDTDKIFENPES 293
|
Length = 305 |
| >gnl|CDD|172757 PRK14269, PRK14269, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 111 bits (279), Expect = 2e-27
Identities = 70/217 (32%), Positives = 113/217 (52%), Gaps = 6/217 (2%)
Query: 398 AIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLS---GEILLDGNNIKGLDLK 454
A+FD + I KI AL+G SG GKST + R + ++ G + ++G ++K D+
Sbjct: 17 ALFD-INMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVV 75
Query: 455 WLRQQIGLVNQEPALFATTIRENILYG-KDDATMEEITRAAKLSEAMSFISNLPERFETQ 513
LR+ +G+V Q+P +F +I ENI Y K ++ L L E + +
Sbjct: 76 ALRKNVGMVFQQPNVFVKSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKDK 135
Query: 514 VGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTV 573
+ + + LSGGQ+QR+ I+RA+ P +LLLDE TSALD S ++E L + + +
Sbjct: 136 LKQNALALSGGQQQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSHNLSMI 195
Query: 574 VVAHRLST-IRNADVIAVVQGRKIVKTGSHEELISNP 609
+V H + R AD A ++++ G +E NP
Sbjct: 196 MVTHNMQQGKRVADYTAFFHLGELIEFGESKEFFENP 232
|
Length = 246 |
| >gnl|CDD|215650 pfam00005, ABC_tran, ABC transporter | Back alignment and domain information |
|---|
Score = 107 bits (268), Expect = 3e-27
Identities = 52/129 (40%), Positives = 71/129 (55%), Gaps = 13/129 (10%)
Query: 424 STVISLIERFYEPLSGEILLDGNNIKGL-DLKWLRQQIGLVNQEPALFAT-TIRENILYG 481
ST++ LI +P SG ILLDG + GL K LR++IG+V Q+P LF T+REN+ +G
Sbjct: 1 STLLKLITGLLQPTSGTILLDGEDGTGLSSRKLLRKRIGVVFQDPQLFPELTVRENLFFG 60
Query: 482 KD-DATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPS 540
A + F+ E LSGGQKQR+AI+RA++K P
Sbjct: 61 LRDKEADARAEEALERVGLPDFLDR----------EPVGTLSGGQKQRVAIARALLKKPK 110
Query: 541 ILLLDEATS 549
+LLLDE T+
Sbjct: 111 LLLLDEPTA 119
|
ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide as in human CFTR, or belong in different polypeptide chains. Length = 119 |
| >gnl|CDD|172747 PRK14259, PRK14259, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 111 bits (280), Expect = 4e-27
Identities = 73/225 (32%), Positives = 116/225 (51%), Gaps = 31/225 (13%)
Query: 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYE-----P 436
I ++V+ Y + A+ + FC DIP GK+ AL+G SG GKSTV+ + R +
Sbjct: 14 ISLQNVTISYGTF--EAVKNVFC-DIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCS 70
Query: 437 LSGEILLDGNNI--KGLDLKWLRQQIGLVNQEPALFATTIRENILYGK---------DDA 485
L G +L DG ++ +D +R++IG+V Q+P F +I ENI +G D+
Sbjct: 71 LKGRVLFDGTDLYDPRVDPVEVRRRIGMVFQQPNPFPKSIYENIAFGARINGYTGDMDEL 130
Query: 486 TMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLD 545
+ +AA E + ++ E G LSGGQ+QR+ I+R I P ++L+D
Sbjct: 131 VERSLRKAAVWDEC-----------KDKLNESGYSLSGGQQQRLCIARTIAIEPEVILMD 179
Query: 546 EATSALDAESENSVQEALDRVMVGRTTVVVAHRL-STIRNADVIA 589
E SALD S ++E + + T V+V H + +R +D+ A
Sbjct: 180 EPCSALDPISTLKIEETMHELKKNFTIVIVTHNMQQAVRVSDMTA 224
|
Length = 269 |
| >gnl|CDD|172749 PRK14261, PRK14261, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 111 bits (278), Expect = 4e-27
Identities = 65/220 (29%), Positives = 116/220 (52%), Gaps = 20/220 (9%)
Query: 405 LDIPAGKIVALVGGSGSGKSTVISLIERFYEPLS-----GEILLDGNNI--KGLDLKWLR 457
+ IP ++ AL+G SG GKST++ R + + G+IL +G NI G D+ LR
Sbjct: 27 ISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADVVALR 86
Query: 458 QQIGLVNQEPALFATTIRENILYG------KDDATMEEITRAAKLSEAMSFISNLPERFE 511
++IG+V Q P F +I EN+ YG K+ T++ I + L A L + +
Sbjct: 87 RKIGMVFQRPNPFPKSIYENVAYGPRIHGEKNKKTLDTIVEKS-LKGAA-----LWDEVK 140
Query: 512 TQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRT 571
++ + + LSGGQ+QR+ I+R + NP ++L+DE SALD + +++ ++ + T
Sbjct: 141 DRLHDSALSLSGGQQQRLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKKEYT 200
Query: 572 TVVVAHRLS-TIRNADVIAVVQGRKIVKTGSHEELISNPN 610
++V H + R +D + K+++ ++ NP+
Sbjct: 201 VIIVTHNMQQAARVSDYTGFMYLGKLIEFDKTTQIFENPH 240
|
Length = 253 |
| >gnl|CDD|213186 cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component of branched chain amino acids transport system | Back alignment and domain information |
|---|
Score = 110 bits (278), Expect = 4e-27
Identities = 69/221 (31%), Positives = 109/221 (49%), Gaps = 23/221 (10%)
Query: 405 LDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGL--DLKWLRQQIGL 462
+ G+I L+G +G+GK+T+ +LI F P SG +L DG +I GL R IG
Sbjct: 21 FSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIA-RLGIGR 79
Query: 463 VNQEPALFAT-TIRENIL----------YGKDDATMEEITRAAKLSEAMSFISNLPERFE 511
Q P LF T+ EN++ A EE + E + + L + +
Sbjct: 80 TFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERV-GLADLAD 138
Query: 512 TQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMV-GR 570
GE LS GQ++R+ I+RA+ +P +LLLDE + L+ E + E + + G
Sbjct: 139 RPAGE----LSYGQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRERGI 194
Query: 571 TTVVVAHRLSTIRN-ADVIAV-VQGRKIVKTGSHEELISNP 609
T ++V H + + + AD + V QGR I G+ +E+ +NP
Sbjct: 195 TVLLVEHDMDVVMSLADRVTVLDQGRVIA-EGTPDEVRNNP 234
|
The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). Length = 236 |
| >gnl|CDD|172735 PRK14247, PRK14247, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 111 bits (278), Expect = 4e-27
Identities = 76/228 (33%), Positives = 119/228 (52%), Gaps = 20/228 (8%)
Query: 396 DVAIFDKFCLDIPAGKIVALVGGSGSGKSTVIS----LIERFYEP-LSGEILLDGNNIKG 450
V + D L+IP I AL+G SGSGKST++ LIE + E +SGE+ LDG +I
Sbjct: 15 QVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFK 74
Query: 451 LDLKWLRQQIGLVNQEPALFAT-TIRENILYG-------KDDATMEEITRAAKLSEAMSF 502
+D+ LR+++ +V Q P +I EN+ G K ++E R A L +A
Sbjct: 75 MDVIELRRRVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKELQERVRWA-LEKA--- 130
Query: 503 ISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEA 562
L + + ++ +LSGGQ+QR+ I+RA+ P +LL DE T+ LD E+ ++
Sbjct: 131 --QLWDEVKDRLDAPAGKLSGGQQQRLCIARALAFQPEVLLADEPTANLDPENTAKIESL 188
Query: 563 LDRVMVGRTTVVVAH-RLSTIRNADVIAVVQGRKIVKTGSHEELISNP 609
+ T V+V H R +D +A + +IV+ G E+ +NP
Sbjct: 189 FLELKKDMTIVLVTHFPQQAARISDYVAFLYKGQIVEWGPTREVFTNP 236
|
Length = 250 |
| >gnl|CDD|237651 PRK14266, PRK14266, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 110 bits (277), Expect = 5e-27
Identities = 68/228 (29%), Positives = 118/228 (51%), Gaps = 20/228 (8%)
Query: 396 DVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLS-----GEILLDGNNI-- 448
D I LDIP + AL+G SG GKST I + R + + G I LDG +I
Sbjct: 15 DAHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYD 74
Query: 449 KGLDLKWLRQQIGLVNQEPALFATTIRENILYG------KDDATMEEITRAAKLSEAMSF 502
+D+ LR+++G+V Q+P F +I +N+ YG D+ +EE + + A
Sbjct: 75 PAVDVVELRKKVGMVFQKPNPFPKSIFDNVAYGLRIHGEDDEDFIEERVEESLKAAA--- 131
Query: 503 ISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEA 562
L + + ++ + + LSGGQ+QR+ I+R I +P ++L+DE SALD S +++
Sbjct: 132 ---LWDEVKDKLDKSALGLSGGQQQRLCIARTIAVSPEVILMDEPCSALDPISTTKIEDL 188
Query: 563 LDRVMVGRTTVVVAHRL-STIRNADVIAVVQGRKIVKTGSHEELISNP 609
+ ++ T V+V H + R + + +I+++G +++ NP
Sbjct: 189 IHKLKEDYTIVIVTHNMQQATRVSKYTSFFLNGEIIESGLTDQIFINP 236
|
Length = 250 |
| >gnl|CDD|226927 COG4555, NatA, ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 110 bits (276), Expect = 7e-27
Identities = 72/248 (29%), Positives = 128/248 (51%), Gaps = 16/248 (6%)
Query: 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEI 441
+E D++ Y S+ V + G+I L+G +G+GK+T++ +I P SG++
Sbjct: 2 LEVTDLTKSYGSK--VQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKV 59
Query: 442 LLDGNNIKGLDLKWLRQQIGLVNQEPALFA-TTIRENILYGKDDATMEEITRAAKLSEAM 500
+DG + D ++R++IG++ E L+A T REN+ Y + A+++E
Sbjct: 60 TIDGVDTVR-DPSFVRRKIGVLFGERGLYARLTARENLKYFARLNGLSRKEIKARIAELS 118
Query: 501 SFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQ 560
+ L E + +VGE S G KQ++AI+RA+V +PSIL+LDE TS LD +
Sbjct: 119 KRL-QLLEYLDRRVGE----FSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFH 173
Query: 561 EALDRVM-VGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELIS-----NPNSAY 613
+ + ++ GR + +H + + D + V+ ++V GS E L + N +
Sbjct: 174 DFIKQLKNEGRAVIFSSHIMQEVEALCDRVIVLHKGEVVLEGSIEALDARTVLRNLEEIF 233
Query: 614 AALVQLQE 621
A ++L+E
Sbjct: 234 AFALKLEE 241
|
Length = 245 |
| >gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily | Back alignment and domain information |
|---|
Score = 108 bits (271), Expect = 9e-27
Identities = 67/227 (29%), Positives = 110/227 (48%), Gaps = 51/227 (22%)
Query: 382 IEFKDVSFCYPSRPDVAIFDKFCLD-----IPAGKIVALVGGSGSGKSTVISLI--ERFY 434
+ F++++ + + K L G++ A++G SG+GKST+++ + R
Sbjct: 4 LSFRNLT--VTVKSSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTG 61
Query: 435 EPLSGEILLDGNNIKGLDLKWLRQQIGLVNQEPALFAT-TIRENILYGKDDATMEEITRA 493
+SGE+L++G LD + R+ IG V Q+ L T T+RE +++ A
Sbjct: 62 LGVSGEVLINGRP---LDKRSFRKIIGYVPQDDILHPTLTVRETLMF------------A 106
Query: 494 AKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDA 553
AKL RG+ SGG+++R++I+ +V NPS+L LDE TS LD+
Sbjct: 107 AKL--------------------RGL--SGGERKRVSIALELVSNPSLLFLDEPTSGLDS 144
Query: 554 ESENSVQEALDR-VMVGRTTVVVAHRLST--IRNAD-VIAVVQGRKI 596
S V L R GRT + H+ S+ D ++ + QGR I
Sbjct: 145 SSALQVMSLLRRLADTGRTIICSIHQPSSEIFELFDKLLLLSQGRVI 191
|
ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. Length = 194 |
| >gnl|CDD|184209 PRK13650, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 110 bits (277), Expect = 1e-26
Identities = 74/288 (25%), Positives = 138/288 (47%), Gaps = 31/288 (10%)
Query: 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEI 441
IE K+++F Y + + + G+ ++++G +GSGKST + LI+ E SG+I
Sbjct: 5 IEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQI 64
Query: 442 LLDGNNIKGLDLKWLRQQIGLVNQEP--ALFATTIRENILYGKDDATMEEITRAAKLSEA 499
++DG+ + ++ +R +IG+V Q P T+ +++ +G ++ + +++EA
Sbjct: 65 IIDGDLLTEENVWDIRHKIGMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKERVNEA 124
Query: 500 MSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESE--- 556
+ + + F+ + R LSGGQKQR+AI+ A+ P I++LDEATS LD E
Sbjct: 125 LELVGM--QDFKEREPAR---LSGGQKQRVAIAGAVAMRPKIIILDEATSMLDPEGRLEL 179
Query: 557 -NSVQEALDRVMVGRTTVVVAHRLSTIRNADVIAVVQGRKIVKTGSHEELISNPNSAYAA 615
+++ D T + + H L + +D + V++ ++ T + EL S N
Sbjct: 180 IKTIKGIRDD--YQMTVISITHDLDEVALSDRVLVMKNGQVESTSTPRELFSRGND---- 233
Query: 616 LVQLQEAASQQSNSSQCPNMGRPLSIKFSRELSGTRTSFGASFRSEKE 663
L+QL + P + + L + +EKE
Sbjct: 234 LLQL--------------GLDIPFTTSLVQSLRQNGYDLPEGYLTEKE 267
|
Length = 279 |
| >gnl|CDD|213193 cd03226, ABC_cobalt_CbiO_domain2, Second domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 108 bits (271), Expect = 1e-26
Identities = 64/196 (32%), Positives = 103/196 (52%), Gaps = 17/196 (8%)
Query: 385 KDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLD 444
+++SF Y + I D LD+ AG+I+AL G +G+GK+T+ ++ + SG ILL+
Sbjct: 3 ENISFSYKKGTE--ILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLN 60
Query: 445 GNNIKGLDLKWLRQQIGLVNQEP--ALFATTIRENILYGKDDATMEEITRAAKLSEAMSF 502
G IK K R+ IG V Q+ LF ++RE +L G + +A + + +
Sbjct: 61 GKPIK---AKERRKSIGYVMQDVDYQLFTDSVREELLLGLKELD-AGNEQAETVLKDLD- 115
Query: 503 ISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEA 562
+ L ER LSGGQKQR+AI+ A++ +L+ DE TS LD ++ V E
Sbjct: 116 LYALKERHPLS-------LSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGEL 168
Query: 563 LDRVM-VGRTTVVVAH 577
+ + G+ +V+ H
Sbjct: 169 IRELAAQGKAVIVITH 184
|
Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 205 |
| >gnl|CDD|237646 PRK14237, PRK14237, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 109 bits (275), Expect = 1e-26
Identities = 69/218 (31%), Positives = 110/218 (50%), Gaps = 22/218 (10%)
Query: 373 RKLDKLSGHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIER 432
+ + KD+ Y + AI + KI AL+G SGSGKST + + R
Sbjct: 12 ITFPEEEIALSTKDLHVYYGKKE--AIKG-IDMQFEKNKITALIGPSGSGKSTYLRSLNR 68
Query: 433 FYEPL-----SGEILLDGNNI--KGLDLKWLRQQIGLVNQEPALFATTIRENILYG---- 481
+ + +G+IL G +I K +++ +R+ IG+V Q P FA +I ENI +
Sbjct: 69 MNDTIDIARVTGQILYRGIDINRKEINVYEMRKHIGMVFQRPNPFAKSIYENITFALERA 128
Query: 482 --KDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNP 539
KD ++EI + L +A L ++ + + + + LSGGQ+QR+ I+RAI P
Sbjct: 129 GVKDKKVLDEIVETS-LKQAA-----LWDQVKDDLHKSALTLSGGQQQRLCIARAIAVKP 182
Query: 540 SILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAH 577
ILL+DE SALD S ++E + + T ++V H
Sbjct: 183 DILLMDEPASALDPISTMQLEETMFELKKNYTIIIVTH 220
|
Length = 267 |
| >gnl|CDD|182221 PRK10070, PRK10070, glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 112 bits (282), Expect = 2e-26
Identities = 74/217 (34%), Positives = 121/217 (55%), Gaps = 13/217 (5%)
Query: 405 LDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQ----QI 460
L I G+I ++G SGSGKST++ L+ R EP G++L+DG +I + LR+ +I
Sbjct: 49 LAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKKI 108
Query: 461 GLVNQEPALFA-TTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGI 519
+V Q AL T+ +N +G + A + R K +A+ + E
Sbjct: 109 AMVFQSFALMPHMTVLDNTAFGMELAGINAEERREKALDALRQVG-----LENYAHSYPD 163
Query: 520 QLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVG--RTTVVVAH 577
+LSGG +QR+ ++RA+ NP ILL+DEA SALD +Q+ L ++ RT V ++H
Sbjct: 164 ELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQRTIVFISH 223
Query: 578 RL-STIRNADVIAVVQGRKIVKTGSHEELISNPNSAY 613
L +R D IA++Q ++V+ G+ +E+++NP + Y
Sbjct: 224 DLDEAMRIGDRIAIMQNGEVVQVGTPDEILNNPANDY 260
|
Length = 400 |
| >gnl|CDD|213191 cd03224, ABC_TM1139_LivF_branched, ATP-binding cassette domain of branched-chain amino acid transporter | Back alignment and domain information |
|---|
Score = 106 bits (268), Expect = 5e-26
Identities = 67/211 (31%), Positives = 106/211 (50%), Gaps = 16/211 (7%)
Query: 405 LDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDL-KWLRQQIGLV 463
L +P G+IVAL+G +G+GK+T++ I P SG I DG +I GL + R IG V
Sbjct: 21 LTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARAGIGYV 80
Query: 464 NQEPALFAT-TIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLS 522
+ +F T+ EN+L G + R A+L L ER + G LS
Sbjct: 81 PEGRRIFPELTVEENLLLGAYARRRAK--RKARLERVYELFPRLKERRKQLAG----TLS 134
Query: 523 GGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVM----VGRTTVVVAHR 578
GG++Q +AI+RA++ P +LLLDE + L + V+E + + G T ++V
Sbjct: 135 GGEQQMLAIARALMSRPKLLLLDEPSEGL---APKIVEEIFEAIRELRDEGVTILLVEQN 191
Query: 579 LSTIRN-ADVIAVVQGRKIVKTGSHEELISN 608
AD V++ ++V G+ EL+++
Sbjct: 192 ARFALEIADRAYVLERGRVVLEGTAAELLAD 222
|
LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. Length = 222 |
| >gnl|CDD|172739 PRK14251, PRK14251, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 107 bits (269), Expect = 5e-26
Identities = 79/247 (31%), Positives = 121/247 (48%), Gaps = 33/247 (13%)
Query: 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYE-----P 436
I KDV Y + LD ++ AL+G SG GKST + + R +
Sbjct: 5 ISAKDVHLSYG---NYEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIK 61
Query: 437 LSGEILLDGNNIKG--LDLKWLRQQIGLVNQEPALFATTIRENILYG------KD----D 484
++GEI +G NI G +DL LR+++G+V Q+P F ++ +N+ YG KD D
Sbjct: 62 ITGEIKFEGQNIYGSKMDLVELRKEVGMVFQQPTPFPFSVYDNVAYGLKIAGVKDKELID 121
Query: 485 ATMEE-ITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILL 543
+EE + +AA E + + F SGGQ+QRI I+RA+ P ++L
Sbjct: 122 QRVEESLKQAAIWKETKDNLDRNAQAF-----------SGGQQQRICIARALAVRPKVVL 170
Query: 544 LDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTI-RNADVIAVVQGRKIVKTGSH 602
LDE TSALD S + ++E L + T ++V H L R +D A + +++ G
Sbjct: 171 LDEPTSALDPISSSEIEETLMELKHQYTFIMVTHNLQQAGRISDQTAFLMNGDLIEAGPT 230
Query: 603 EELISNP 609
EE+ P
Sbjct: 231 EEMFIAP 237
|
Length = 251 |
| >gnl|CDD|215595 PLN03130, PLN03130, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 115 bits (291), Expect = 6e-26
Identities = 72/229 (31%), Positives = 120/229 (52%), Gaps = 16/229 (6%)
Query: 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEI 441
I K+ F + S+ + LD+P G +VA+VG +G GK+++IS + P S
Sbjct: 615 ISIKNGYFSWDSKAERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRS--- 671
Query: 442 LLDGNNIKGLDLKWLRQQIGLVNQEPALFATTIRENILYGKD-DATMEEITRAAKLSEAM 500
D + + +R + V Q +F T+R+NIL+G D E RA ++
Sbjct: 672 --DASVV-------IRGTVAYVPQVSWIFNATVRDNILFGSPFDPERYE--RAIDVTALQ 720
Query: 501 SFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSV- 559
+ LP T++GERG+ +SGGQKQR++++RA+ N + + D+ SALDA V
Sbjct: 721 HDLDLLPGGDLTEIGERGVNISGGQKQRVSMARAVYSNSDVYIFDDPLSALDAHVGRQVF 780
Query: 560 QEALDRVMVGRTTVVVAHRLSTIRNADVIAVVQGRKIVKTGSHEELISN 608
+ + + G+T V+V ++L + D I +V I + G++EEL +N
Sbjct: 781 DKCIKDELRGKTRVLVTNQLHFLSQVDRIILVHEGMIKEEGTYEELSNN 829
|
Length = 1622 |
| >gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Score = 115 bits (289), Expect = 7e-26
Identities = 100/388 (25%), Positives = 176/388 (45%), Gaps = 29/388 (7%)
Query: 703 ICAIIAGAQMPLFALGVSQALVAYYMDWDTTQREVKKITILFCCAAVITVIVHAIEHLSF 762
+CA I+G +P F ++ M V I + I+ I
Sbjct: 67 VCATISGGTLPFFV-----SVFGVIMKNMNLGENVNDIIFSLVLIGIFQFILSFISSFCM 121
Query: 763 GIMGERLTLRVREKMFSAILSNEIGWFDEMDNSSSILASRLESDATL-LRTIVVDRSTIL 821
++ ++ ++ + ++ + G F DN+ S+L SD L + T
Sbjct: 122 DVVTTKILKTLKLEFLKSVFYQD-GQFH--DNNP---GSKLTSDLDFYLEQVNAGIGTKF 175
Query: 822 IQNFGLVTAS---FVIAFILNWRITLVVVATYPLI-ISGHISEKLFFQGYGGNLSKAYLK 877
I F +A ++ + N R+TL + +PLI I G I K S Y
Sbjct: 176 ITIFTYASAFLGLYIWSLFKNARLTLCITCVFPLIYICGVICNKKV--KINKKTSLLYNN 233
Query: 878 ANM-LAAEAVSNIRTVAAFCSEDKVLELYSRELVEPSKRSFIRGQIAGIFYGISQFFIFS 936
M + EA+ IRTV ++C E +L+ ++ SK + + G+ FI +
Sbjct: 234 NTMSIIEEALVGIRTVVSYCGEKTILKKFNLSEKLYSKYILKANFMESLHIGMINGFILA 293
Query: 937 SYGLALWYGSVLMGKELASFK--------SVMKSFMVLIVTALAMGETLALVPDLLKGNQ 988
SY WYG+ ++ +L++ + SV+ + ++++ + L + + +K +
Sbjct: 294 SYAFGFWYGTRIIISDLSNQQPNNDFHGGSVISILLGVLISMFMLTIILPNITEYMKSLE 353
Query: 989 MAASVFEVLDRKTQVIG-DIGEELTNVEGTIELRGVHFSYPSRPEVVIFKDFNLKVRAGK 1047
S++E+++RK V D G++L +++ I+ + V F Y +R +V I+KD N + GK
Sbjct: 354 ATNSLYEIINRKPLVENNDDGKKLKDIK-KIQFKNVRFHYDTRKDVEIYKDLNFTLTEGK 412
Query: 1048 SMALVGQSGSGKSTVLSLILRFYDPTAG 1075
+ A VG+SG GKST+L LI R YDPT G
Sbjct: 413 TYAFVGESGCGKSTILKLIERLYDPTEG 440
|
Length = 1466 |
| >gnl|CDD|237455 PRK13637, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 108 bits (272), Expect = 7e-26
Identities = 77/242 (31%), Positives = 126/242 (52%), Gaps = 24/242 (9%)
Query: 382 IEFKDVSFCY-PSRPDVAIFDKFCLD-----IPAGKIVALVGGSGSGKSTVISLIERFYE 435
I+ ++++ Y P F+K LD I G+ V L+G +GSGKST+I + +
Sbjct: 3 IKIENLTHIYMEGTP----FEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLK 58
Query: 436 PLSGEILLDGNNI--KGLDLKWLRQQIGLVNQEP--ALFATTIRENILYGKDDATMEEIT 491
P SG+I++DG +I K + L +R+++GLV Q P LF TI ++I +G + + E
Sbjct: 59 PTSGKIIIDGVDITDKKVKLSDIRKKVGLVFQYPEYQLFEETIEKDIAFGPINLGLSEEE 118
Query: 492 RAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSAL 551
++ AM+ I L +E + +LSGGQK+R+AI+ + P IL+LDE T+ L
Sbjct: 119 IENRVKRAMN-IVGLD--YEDYKDKSPFELSGGQKRRVAIAGVVAMEPKILILDEPTAGL 175
Query: 552 DA----ESENSVQEALDRVMVGRTTVVVAHRLSTI-RNADVIAVVQGRKIVKTGSHEELI 606
D E N ++E T ++V+H + + + AD I V+ K G+ E+
Sbjct: 176 DPKGRDEILNKIKELHKE--YNMTIILVSHSMEDVAKLADRIIVMNKGKCELQGTPREVF 233
Query: 607 SN 608
Sbjct: 234 KE 235
|
Length = 287 |
| >gnl|CDD|237454 PRK13634, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 108 bits (272), Expect = 7e-26
Identities = 84/290 (28%), Positives = 138/290 (47%), Gaps = 40/290 (13%)
Query: 382 IEFKDVSFCY-PSRP--DVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLS 438
I F+ V Y P A++D + IP+G VA++G +GSGKST++ + +P S
Sbjct: 3 ITFQKVEHRYQYKTPFERRALYD-VNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTS 61
Query: 439 GEILLDGNNI----KGLDLKWLRQQIGLVNQ--EPALFATTIRENILYGKDDATMEEITR 492
G + + I K LK LR+++G+V Q E LF T+ ++I +G + + E
Sbjct: 62 GTVTIGERVITAGKKNKKLKPLRKKVGIVFQFPEHQLFEETVEKDICFGPMNFGVSE-ED 120
Query: 493 AAKLSEAMSFISNLPERFETQVGERG-IQLSGGQKQRIAISRAIVKNPSILLLDEATSAL 551
A + + M + LPE ++ R +LSGGQ +R+AI+ + P +L+LDE T+ L
Sbjct: 121 AKQKAREMIELVGLPE----ELLARSPFELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGL 176
Query: 552 DAESENSVQEALDRVM--VGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELISN 608
D + + E ++ G TTV+V H + AD I V+ + G+ E+ ++
Sbjct: 177 DPKGRKEMMEMFYKLHKEKGLTTVLVTHSMEDAARYADQIVVMHKGTVFLQGTPREIFAD 236
Query: 609 PNSAYAALVQLQEAASQQSNSSQCPNMGRPLSIKFSRELSGTRTSFGASF 658
P+ L + + P ++KF R L FG SF
Sbjct: 237 PDE----LEAIG--------------LDLPETVKFKRALEEK---FGISF 265
|
Length = 290 |
| >gnl|CDD|184585 PRK14239, PRK14239, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 107 bits (268), Expect = 8e-26
Identities = 68/219 (31%), Positives = 115/219 (52%), Gaps = 20/219 (9%)
Query: 405 LDIPAGKIVALVGGSGSGKSTVISLIERFYE-----PLSGEILLDGNNIKG--LDLKWLR 457
LD +I AL+G SGSGKST++ I R + ++G I+ +G+NI D LR
Sbjct: 26 LDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDTVDLR 85
Query: 458 QQIGLVNQEPALFATTIRENILYG------KDDATMEEITRAAKLSEAMSFISNLPERFE 511
++IG+V Q+P F +I EN++YG KD ++E + L A ++ + +
Sbjct: 86 KEIGMVFQQPNPFPMSIYENVVYGLRLKGIKDKQVLDEAVEKS-LKGA-----SIWDEVK 139
Query: 512 TQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRT 571
++ + + LSGGQ+QR+ I+R + +P I+LLDE TSALD S ++E L + T
Sbjct: 140 DRLHDSALGLSGGQQQRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKDDYT 199
Query: 572 TVVVAHRLSTI-RNADVIAVVQGRKIVKTGSHEELISNP 609
++V + R +D +++ +++ NP
Sbjct: 200 MLLVTRSMQQASRISDRTGFFLDGDLIEYNDTKQMFMNP 238
|
Length = 252 |
| >gnl|CDD|184208 PRK13649, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 107 bits (270), Expect = 9e-26
Identities = 75/236 (31%), Positives = 122/236 (51%), Gaps = 26/236 (11%)
Query: 382 IEFKDVSFCYPSRPDV---AIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLS 438
I ++VS+ Y + A+FD L I G A +G +GSGKST++ L+ + P
Sbjct: 3 INLQNVSYTYQAGTPFEGRALFD-VNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQ 61
Query: 439 GEILLDGNNI----KGLDLKWLRQQIGLVNQ--EPALFATTIRENILYGKDD--ATMEEI 490
G + +D I K D+K +R+++GLV Q E LF T+ +++ +G + + EE
Sbjct: 62 GSVRVDDTLITSTSKNKDIKQIRKKVGLVFQFPESQLFEETVLKDVAFGPQNFGVSQEEA 121
Query: 491 TRAAKLSEAMSFIS-NLPER--FETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEA 547
A+ A+ IS +L E+ FE LSGGQ +R+AI+ + P IL+LDE
Sbjct: 122 EALAREKLALVGISESLFEKNPFE---------LSGGQMRRVAIAGILAMEPKILVLDEP 172
Query: 548 TSALDAESENSVQEALDRV-MVGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGS 601
T+ LD + + ++ G T V+V H + + N AD + V++ K+V +G
Sbjct: 173 TAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLMDDVANYADFVYVLEKGKLVLSGK 228
|
Length = 280 |
| >gnl|CDD|130344 TIGR01277, thiQ, thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 105 bits (264), Expect = 1e-25
Identities = 78/208 (37%), Positives = 113/208 (54%), Gaps = 29/208 (13%)
Query: 402 KFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIG 461
+F L++ G+IVA++G SG+GKST+++LI F EP SG I ++ + GL ++ +
Sbjct: 16 EFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLAPY--QRPVS 73
Query: 462 LVNQEPALFA-TTIRENILYG-----KDDATMEE-ITRAAKLSEAMSFISNLPERFETQV 514
++ QE LFA T+R+NI G K +A +E + AA+ ++ LPE
Sbjct: 74 MLFQENNLFAHLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQQVGIADYLDRLPE------ 127
Query: 515 GERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMV-----G 569
QLSGGQ+QR+A++R +V+ ILLLDE SALD +E L V
Sbjct: 128 -----QLSGGQRQRVALARCLVRPNPILLLDEPFSALDPLLR---EEMLALVKQLCSERQ 179
Query: 570 RTTVVVAHRLS-TIRNADVIAVVQGRKI 596
RT ++V H LS A IAVV KI
Sbjct: 180 RTLLMVTHHLSDARAIASQIAVVSQGKI 207
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found [Transport and binding proteins, Other]. Length = 213 |
| >gnl|CDD|184590 PRK14249, PRK14249, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 107 bits (267), Expect = 1e-25
Identities = 68/236 (28%), Positives = 119/236 (50%), Gaps = 11/236 (4%)
Query: 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSG-- 439
I+ + V+F Y + +D P +I A++G SG GKST++ + R + +SG
Sbjct: 5 IKIRGVNFFYHKH---QVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGAR 61
Query: 440 ---EILLDGNNI--KGLDLKWLRQQIGLVNQEPALFATTIRENILYGKDDATMEEITRAA 494
+LLD NI LD+ LR+++G+V Q+P F +I +N+ +G +R
Sbjct: 62 LEGAVLLDNENIYSPNLDVVNLRKRVGMVFQQPNPFPKSIFDNVAFGPRMLGTTAQSRLD 121
Query: 495 KLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAE 554
++ E + L + + + + G+ LSGGQ+QR+ I+R + P ++L+DE SALD
Sbjct: 122 EVVEKSLRQAALWDEVKDNLHKSGLALSGGQQQRLCIARVLAIEPEVILMDEPCSALDPV 181
Query: 555 SENSVQEALDRVMVGRTTVVVAHRL-STIRNADVIAVVQGRKIVKTGSHEELISNP 609
S ++E + + T +V H + R +D + +V+ G E+ S P
Sbjct: 182 STMRIEELMQELKQNYTIAIVTHNMQQAARASDWTGFLLTGDLVEYGRTGEIFSRP 237
|
Length = 251 |
| >gnl|CDD|183063 PRK11264, PRK11264, putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Score = 106 bits (267), Expect = 1e-25
Identities = 82/225 (36%), Positives = 120/225 (53%), Gaps = 33/225 (14%)
Query: 405 LDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSG-----EILLDG----NNIKGLDLKW 455
L++ G++VA++G SGSGK+T++ I +P +G +I +D + KGL ++
Sbjct: 24 LEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQKGL-IRQ 82
Query: 456 LRQQIGLVNQEPALFA-TTIRENILYG----KDDATMEEITRAAKLSEAMSFISNLPERF 510
LRQ +G V Q LF T+ ENI+ G K + E RA +L +
Sbjct: 83 LRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATARARELLAKVGLAGK----- 137
Query: 511 ETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMV-- 568
ET R LSGGQ+QR+AI+RA+ P ++L DE TSALD E V E L+ +
Sbjct: 138 ETSYPRR---LSGGQQQRVAIARALAMRPEVILFDEPTSALDPE---LVGEVLNTIRQLA 191
Query: 569 --GRTTVVVAHRLSTIRN-AD-VIAVVQGRKIVKTGSHEELISNP 609
RT V+V H +S R+ AD I + QGR IV+ G + L ++P
Sbjct: 192 QEKRTMVIVTHEMSFARDVADRAIFMDQGR-IVEQGPAKALFADP 235
|
Length = 250 |
| >gnl|CDD|188098 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Score = 113 bits (285), Expect = 2e-25
Identities = 99/399 (24%), Positives = 188/399 (47%), Gaps = 43/399 (10%)
Query: 246 EVIGNVRTVQAFAGE----DKAVKVYKEALSNTYKYGRKAGLAKGLGLGSMHCVLFLSWS 301
E++ ++ ++ +A E DK + +E L K +K+ +G + C FL
Sbjct: 501 EILNGIKVLKLYAWELAFLDKVEGIRQEEL----KVLKKSAYLHAVGTFTWVCTPFLVAL 556
Query: 302 LLVWYVSVVVHKHISNGGESFTTMLNVVIAGLSLGQAAPDITAFIRAKAAAYPI-----F 356
+ V +I + ++F ++ I L I++ ++A + +
Sbjct: 557 ITFAVYVTVDENNILDAEKAFVSLALFNILRFPLNILPMVISSIVQASVSLKRLRIFLSH 616
Query: 357 EMIERDTMSKASSKTGRKLDKLSGHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALV 416
E +E D++ + + K G I + +F + +R + IP G +VA+V
Sbjct: 617 EELEPDSIERRTIKPGE-----GNSITVHNATFTW-ARDLPPTLNGITFSIPEGALVAVV 670
Query: 417 GGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIGLVNQEPALFATTIRE 476
G G GKS+++S + + + G + + G+ + V Q+ + ++RE
Sbjct: 671 GQVGCGKSSLLSALLAEMDKVEGHVHMKGS-------------VAYVPQQAWIQNDSLRE 717
Query: 477 NILYGKDDATMEEITRAAKLSEAMSFISNL---PERFETQVGERGIQLSGGQKQRIAISR 533
NIL+GK + E ++ EA + + +L P T++GE+G+ LSGGQKQR++++R
Sbjct: 718 NILFGK---ALNE-KYYQQVLEACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLAR 773
Query: 534 AIVKNPSILLLDEATSALDAESENSVQEAL---DRVMVGRTTVVVAHRLSTIRNADVIAV 590
A+ N I L D+ SA+DA + E + + V+ +T ++V H +S + DVI V
Sbjct: 774 AVYSNADIYLFDDPLSAVDAHVGKHIFEHVIGPEGVLKNKTRILVTHGISYLPQVDVIIV 833
Query: 591 VQGRKIVKTGSHEELISNPNSAYAALVQLQEAASQQSNS 629
+ G KI + GS++EL+ + A+A ++ QQ +
Sbjct: 834 MSGGKISEMGSYQELLQR-DGAFAEFLRTYAPDEQQGHL 871
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved [Transport and binding proteins, Other]. Length = 1522 |
| >gnl|CDD|184199 PRK13639, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 107 bits (268), Expect = 2e-25
Identities = 78/247 (31%), Positives = 128/247 (51%), Gaps = 19/247 (7%)
Query: 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEI 441
+E +D+ + YP G++VAL+G +G+GKST+ +P SGE+
Sbjct: 2 LETRDLKYSYPD--GTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEV 59
Query: 442 LLDGNNIKGLDLKWL---RQQIGLVNQEP--ALFATTIRENILYGKDDA--TMEEITRAA 494
L+ G IK D K L R+ +G+V Q P LFA T+ E++ +G + + EE+ +
Sbjct: 60 LIKGEPIK-YDKKSLLEVRKTVGIVFQNPDDQLFAPTVEEDVAFGPLNLGLSKEEVEKRV 118
Query: 495 KLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAE 554
K EA+ + E FE + LSGGQK+R+AI+ + P I++LDE TS LD
Sbjct: 119 K--EALKAVGM--EGFENKPPH---HLSGGQKKRVAIAGILAMKPEIIVLDEPTSGLDPM 171
Query: 555 SENSVQEAL-DRVMVGRTTVVVAHRLSTI-RNADVIAVVQGRKIVKTGSHEELISNPNSA 612
+ + + L D G T ++ H + + AD + V+ KI+K G+ +E+ S+ +
Sbjct: 172 GASQIMKLLYDLNKEGITIIISTHDVDLVPVYADKVYVMSDGKIIKEGTPKEVFSDIETI 231
Query: 613 YAALVQL 619
A ++L
Sbjct: 232 RKANLRL 238
|
Length = 275 |
| >gnl|CDD|172748 PRK14260, PRK14260, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 106 bits (266), Expect = 2e-25
Identities = 77/247 (31%), Positives = 124/247 (50%), Gaps = 28/247 (11%)
Query: 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYE-----P 436
I+ KD+SF Y + + + +DI K+ A++G SG GKST I + R E
Sbjct: 8 IKVKDLSFYYNTSKAI---EGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVK 64
Query: 437 LSGEILLDGNNI--KGLDLKWLRQQIGLVNQEPALFATTIRENILYG------KDDATME 488
+ G + G NI +++ LR+QIG+V Q P F +I EN+ YG A ++
Sbjct: 65 VEGVVDFFGQNIYDPRININRLRRQIGMVFQRPNPFPMSIYENVAYGVRISAKLPQADLD 124
Query: 489 EITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEAT 548
EI +A A L + + ++ + + LSGGQ+QR+ I+RA+ P +LL+DE
Sbjct: 125 EIVESALKGAA------LWQEVKDKLNKSALGLSGGQQQRLCIARALAIKPKVLLMDEPC 178
Query: 549 SALDAESENSVQEALDRVMVGRTTVVVAHRL-STIRNADVIAVV---QGR--KIVKTGSH 602
SALD + V+E + + T +V H + R +D A + R ++V+ G
Sbjct: 179 SALDPIATMKVEELIHSLRSELTIAIVTHNMQQATRVSDFTAFFSTDESRIGQMVEFGVT 238
Query: 603 EELISNP 609
++ SNP
Sbjct: 239 TQIFSNP 245
|
Length = 259 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 111 bits (279), Expect = 2e-25
Identities = 68/236 (28%), Positives = 108/236 (45%), Gaps = 39/236 (16%)
Query: 395 PDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLK 454
V D L + G++ AL+G +G+GKST++ ++ Y P SGEIL+DG + +
Sbjct: 19 GGVKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFSSPR 78
Query: 455 WLRQQ-IGLVNQEPALFAT-TIRENILYGK---------DDATMEEITRAAKLSEAMSFI 503
I V+QE +L ++ ENI G+ D M R E ++ +
Sbjct: 79 DALAAGIATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRAR-----ELLARL 133
Query: 504 SNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALD-AESENSVQEA 562
L +T VG+ LS Q+Q + I+RA+ + +L+LDE T+AL E+ E
Sbjct: 134 -GLDIDPDTLVGD----LSIAQRQMVEIARALSFDARVLILDEPTAALTVKET-----ER 183
Query: 563 LDRVMV-----GRTTVVVAHRLSTI-RNADVIAV------VQGRKIVKTGSHEELI 606
L ++ G + ++HRL + AD I V V R S +EL+
Sbjct: 184 LFDLIRRLKAQGVAIIYISHRLDEVFEIADRITVLRDGRVVGTRPTAAETSEDELV 239
|
Length = 500 |
| >gnl|CDD|172762 PRK14274, PRK14274, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 106 bits (265), Expect = 2e-25
Identities = 72/220 (32%), Positives = 118/220 (53%), Gaps = 20/220 (9%)
Query: 405 LDIPAGKIVALVGGSGSGKSTVISLIERFYE-----PLSGEILLDGNNI--KGLDLKWLR 457
L IP ++ A++G SG GKST I + + L+GE+ +G+NI +DL LR
Sbjct: 33 LSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVDLVELR 92
Query: 458 QQIGLVNQEPALFATTIRENILYG------KDDATMEEITRAAKLSEAMSFISNLPERFE 511
+ IG+V Q+ F +I +N+ YG K+ ++EI K + ++ + +R
Sbjct: 93 KNIGMVFQKGNPFPQSIFDNVAYGPRIHGTKNKKKLQEI--VEKSLKDVALWDEVKDRLH 150
Query: 512 TQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRT 571
TQ + LSGGQ+QR+ I+RA+ NP +LL+DE TSALD S ++E + ++ T
Sbjct: 151 TQ----ALSLSGGQQQRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKEKYT 206
Query: 572 TVVVAHRL-STIRNADVIAVVQGRKIVKTGSHEELISNPN 610
V+V H + R +D A ++V+ ++ SNP+
Sbjct: 207 IVIVTHNMQQAARVSDQTAFFYMGELVECNDTNKMFSNPD 246
|
Length = 259 |
| >gnl|CDD|172734 PRK14246, PRK14246, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 105 bits (264), Expect = 3e-25
Identities = 69/234 (29%), Positives = 122/234 (52%), Gaps = 8/234 (3%)
Query: 386 DVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYE------PLSG 439
++S Y D AI + IP I ++G SGSGKST++ ++ R E + G
Sbjct: 12 NISRLYLYINDKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDG 71
Query: 440 EILLDGNNIKGLDLKWLRQQIGLVNQEPALFA-TTIRENILYGKDDATMEEITRAAKLSE 498
++L G +I +D LR+++G+V Q+P F +I +NI Y ++E K+ E
Sbjct: 72 KVLYFGKDIFQIDAIKLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIVE 131
Query: 499 AMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENS 558
L + ++ QLSGGQ+QR+ I+RA+ P +LL+DE TS +D + +
Sbjct: 132 ECLRKVGLWKEVYDRLNSPASQLSGGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQA 191
Query: 559 VQEALDRVMVGRTTVVVAHRLSTI-RNADVIAVVQGRKIVKTGSHEELISNPNS 611
+++ + + V+V+H + R AD +A + ++V+ GS E+ ++P +
Sbjct: 192 IEKLITELKNEIAIVIVSHNPQQVARVADYVAFLYNGELVEWGSSNEIFTSPKN 245
|
Length = 257 |
| >gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 113 bits (284), Expect = 3e-25
Identities = 81/333 (24%), Positives = 145/333 (43%), Gaps = 36/333 (10%)
Query: 405 LDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIGLVN 464
+ +P GK+ ++G +GSGKST++ + +E G + W + I V
Sbjct: 681 VSVPRGKLTVVLGATGSGKSTLLQSLLSQFEISEGRV-------------WAERSIAYVP 727
Query: 465 QEPALFATTIRENILY--GKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLS 522
Q+ + T+R NIL+ +D A + + R ++L EA ++ L ET++GE+G+ LS
Sbjct: 728 QQAWIMNATVRGNILFFDEEDAARLADAVRVSQL-EAD--LAQLGGGLETEIGEKGVNLS 784
Query: 523 GGQKQRIAISRAIVKNPSILLLDEATSALDAE-SENSVQEALDRVMVGRTTVVVAHRLST 581
GGQK R++++RA+ N + LLD+ SALDA E V+E + G+T V+ H++
Sbjct: 785 GGQKARVSLARAVYANRDVYLLDDPLSALDAHVGERVVEECFLGALAGKTRVLATHQVHV 844
Query: 582 IRNADVIAVVQGRKIVKTGSHEELISNPNSAYAALVQLQEAASQQSNSSQCPNMGRPLSI 641
+ AD + + ++ +GS + + YA L A++ + +
Sbjct: 845 VPRADYVVALGDGRVEFSGSSADFMRTS--LYATL------AAELKENKDSKEGDADAEV 896
Query: 642 KFSRELSGTRTSFGASFRSEKESVLSHGAADATEPATAKHVSAIKLYSMVRPDWTY---- 697
G +++E G A + A + ++ + S P TY
Sbjct: 897 AEVDAAPGGAVDHEPP-VAKQEGNAEGGDGAALDAAAGRLMTREEKASGSVPWSTYVAYL 955
Query: 698 GVCGTICAIIAGAQMPLFALGVSQALVAYYMDW 730
CG + A L V++ + W
Sbjct: 956 RFCGGLHAAGF----VLATFAVTELVTVSSGVW 984
|
Length = 1560 |
| >gnl|CDD|213230 cd03263, ABC_subfamily_A, ATP-binding cassette domain of the lipid transporters, subfamily A | Back alignment and domain information |
|---|
Score = 104 bits (261), Expect = 4e-25
Identities = 64/231 (27%), Positives = 118/231 (51%), Gaps = 19/231 (8%)
Query: 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEI 441
++ ++++ Y A+ D L++ G+I L+G +G+GK+T + ++ P SG
Sbjct: 1 LQIRNLTKTYKKGTKPAV-DDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTA 59
Query: 442 LLDGNNIKGLDLKWLRQQIGLVNQEPALFAT-TIRENI-----LYGKDDATMEEITRAAK 495
++G +I+ D K RQ +G Q ALF T+RE++ L G + ++E
Sbjct: 60 YINGYSIRT-DRKAARQSLGYCPQFDALFDELTVREHLRFYARLKGLPKSEIKEE----- 113
Query: 496 LSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAES 555
E + + L ++ + LSGG K++++++ A++ PS+LLLDE TS LD S
Sbjct: 114 -VELLLRVLGLTDKANKRAR----TLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPAS 168
Query: 556 ENSVQEALDRVMVGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEEL 605
++ + + V GR+ ++ H + D IA++ K+ GS +EL
Sbjct: 169 RRAIWDLILEVRKGRSIILTTHSMDEAEALCDRIAIMSDGKLRCIGSPQEL 219
|
The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. Length = 220 |
| >gnl|CDD|132302 TIGR03258, PhnT, 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Score = 108 bits (270), Expect = 4e-25
Identities = 69/230 (30%), Positives = 111/230 (48%), Gaps = 26/230 (11%)
Query: 399 IFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEP--LSGEILLDGNNIKGLDLKWL 456
+ D L+I AG+++AL+G SG GK+T++ I F + L+G I + ++
Sbjct: 20 VLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLT--HAPPH 77
Query: 457 RQQIGLVNQEPALFA-TTIRENILYGKDDATM------EEITRAAKLSEAMSFISNLPER 509
++ + L+ Q ALF + +N+ +G M E + A KL ++LP
Sbjct: 78 KRGLALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAERVADALKLVGLGDAAAHLPA- 136
Query: 510 FETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQE---ALDRV 566
QLSGG +QRIAI+RAI P +LLLDE SALDA +++E AL
Sbjct: 137 ----------QLSGGMQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEE 186
Query: 567 MVGRTTVVVAH-RLSTIRNADVIAVVQGRKIVKTGSHEELISNPNSAYAA 615
+ T + V H + + AD +++ ++ G + L P +AA
Sbjct: 187 LPELTILCVTHDQDDALTLADKAGIMKDGRLAAHGEPQALYDAPADGFAA 236
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. Length = 362 |
| >gnl|CDD|226970 COG4619, COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 104 bits (260), Expect = 6e-25
Identities = 65/202 (32%), Positives = 108/202 (53%), Gaps = 10/202 (4%)
Query: 396 DVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKW 455
D I + L + AG+ +A+ G SG GKST++ ++ P SG +L +G ++ L +
Sbjct: 15 DAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEA 74
Query: 456 LRQQIGLVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVG 515
RQQ+ Q PALF T+ +N+++ RAA A+ ++ ++ +
Sbjct: 75 YRQQVSYCAQTPALFGDTVEDNLIF-PWQIRNRRPDRAA----ALDLLARF-ALPDSILT 128
Query: 516 ERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMV--GRTTV 573
+ +LSGG+KQRIA+ R + P ILLLDE TSALD ++ +++E + R + +
Sbjct: 129 KNITELSGGEKQRIALIRNLQFMPKILLLDEITSALDESNKRNIEEMIHRYVREQNVAVL 188
Query: 574 VVAH-RLSTIRNAD-VIAVVQG 593
+ H + IR+AD VI + G
Sbjct: 189 WITHDKDQAIRHADKVITLQPG 210
|
Length = 223 |
| >gnl|CDD|237647 PRK14248, PRK14248, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 105 bits (262), Expect = 7e-25
Identities = 72/247 (29%), Positives = 122/247 (49%), Gaps = 33/247 (13%)
Query: 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPL---- 437
+E KD+S Y + V + +DI + AL+G SG GKST + I R + +
Sbjct: 22 LEVKDLSIYYGEKRAV---NDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSAR 78
Query: 438 -SGEILLDGNNIKG--LDLKWLRQQIGLVNQEPALFATTIRENILYGK-----------D 483
GEIL +G NI +++ LR++IG+V Q+P F +I NI + D
Sbjct: 79 SEGEILYEGLNILDSNINVVNLRREIGMVFQKPNPFPKSIYNNITHALKYAGERRKSVLD 138
Query: 484 DATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILL 543
+ E +T+AA L + + ++ + LSGGQ+QR+ I+R + P++LL
Sbjct: 139 EIVEESLTKAA-----------LWDEVKDRLHSSALSLSGGQQQRLCIARTLAMKPAVLL 187
Query: 544 LDEATSALDAESENSVQEALDRVMVGRTTVVVAHRL-STIRNADVIAVVQGRKIVKTGSH 602
LDE SALD S ++E + + + ++V H + +R +D A +V+
Sbjct: 188 LDEPASALDPISNAKIEELITELKEEYSIIIVTHNMQQALRVSDRTAFFLNGDLVEYDQT 247
Query: 603 EELISNP 609
E++ ++P
Sbjct: 248 EQIFTSP 254
|
Length = 268 |
| >gnl|CDD|172743 PRK14255, PRK14255, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 104 bits (261), Expect = 8e-25
Identities = 73/242 (30%), Positives = 118/242 (48%), Gaps = 23/242 (9%)
Query: 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYE-----P 436
I DV Y + D LD +I AL+G SG GKST + + R +
Sbjct: 6 ITSSDVHLFYGKFEALKGID---LDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVT 62
Query: 437 LSGEILLDGNNIKG--LDLKWLRQQIGLVNQEPALFATTIRENILYG------KDDATME 488
++G + L G NI D+ LR+Q+G+V Q+P F +I EN++YG KD A ++
Sbjct: 63 ITGNVSLRGQNIYAPNEDVVQLRKQVGMVFQQPNPFPFSIYENVIYGLRLAGVKDKAVLD 122
Query: 489 EITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEAT 548
E + L +A + + + + E + LSGGQ+QR+ I+R + P ++LLDE T
Sbjct: 123 EAVETS-LKQAAIW-----DEVKDHLHESALSLSGGQQQRVCIARVLAVKPDVILLDEPT 176
Query: 549 SALDAESENSVQEALDRVMVGRTTVVVAHRLSTI-RNADVIAVVQGRKIVKTGSHEELIS 607
SALD S ++ L + T ++V H + R +D A +++ +++
Sbjct: 177 SALDPISSTQIENMLLELRDQYTIILVTHSMHQASRISDKTAFFLTGNLIEFADTKQMFL 236
Query: 608 NP 609
NP
Sbjct: 237 NP 238
|
Length = 252 |
| >gnl|CDD|225183 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 110 bits (277), Expect = 1e-24
Identities = 83/353 (23%), Positives = 150/353 (42%), Gaps = 35/353 (9%)
Query: 740 ITILFCCAAVI-TVIVHAIEHLSFGIMGERLTLRVREKMFSAILSNEIGWFDEMDNSSSI 798
+ I AA+ ++ +L +G+RL L + + F +L + +F E + I
Sbjct: 196 LAIGLLLAALFEALLRLLRTYL-IAHLGKRLDLELSGRFFRHLLRLPLSYF-EKRSVGEI 253
Query: 799 LASRLESDATLLRTIVVDRSTILIQNFGLVTASFVIAFILNWRITLVVVATYPL-IISGH 857
+ SR+ + + T++I + + F+ +W++TL+V+A PL ++
Sbjct: 254 I-SRVRELEQIREFLTGSILTLII-DLLFALIFLAVMFLYSWKLTLIVLAAIPLNVLIT- 310
Query: 858 ISEKLFFQGYGGNLSKAYLKANMLAA-------EAVSNIRTVAAFCSEDKVLELYSRELV 910
L FQ L + K +A E + I TV A +E + + L
Sbjct: 311 ----LIFQPL---LRRKTRKLIEESAEQQSFLVETIKGIETVKALAAEPRFRSQWDNRLA 363
Query: 911 EPSKRSFIRGQIAGIFYGISQFFIFSSYGLALWYGSVLMGK------ELASFKSVMKSFM 964
+ F ++A I I S L LW+G++L+ + +L +F + F+
Sbjct: 364 KQVNIGFKTEKLALILNTIKSLLQQLSSVLILWFGAILVLEGELTLGQLVAFNMLAGYFI 423
Query: 965 VLIVTALAMGETLALVPDLLKGNQMAASVFEVLDRKTQVIGD-IGEELTNVEGTIELRGV 1023
I + + + ++LD + GD L ++G IE V
Sbjct: 424 SPITRLSQLWTDFQQA---KVALER---LGDILDTPPEQEGDKTLIHLPKLQGEIEFENV 477
Query: 1024 HFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGK 1076
F Y V+ +D +L++ G+ +A+VG+SGSGKST+L L+L Y P G+
Sbjct: 478 SFRYGPDDPPVL-EDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGR 529
|
Length = 709 |
| >gnl|CDD|132027 TIGR02982, heterocyst_DevA, ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Score = 102 bits (255), Expect = 3e-24
Identities = 60/179 (33%), Positives = 92/179 (51%), Gaps = 10/179 (5%)
Query: 405 LDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGL---DLKWLRQQIG 461
L+I G+IV L G SGSGK+T+++LI G + + G + G +L LR+ IG
Sbjct: 26 LEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQLRRNIG 85
Query: 462 LVNQEPALF-ATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQ 520
+ Q L T R+N+ + A + + AM L + +
Sbjct: 86 YIFQAHNLLGFLTARQNVQMALELQPNLSYQEARERARAMLEAVGLGDHLDYYPH----N 141
Query: 521 LSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMV--GRTTVVVAH 577
LSGGQKQR+AI+RA+V P ++L DE T+ALD++S V E + ++ G T ++V H
Sbjct: 142 LSGGQKQRVAIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTH 200
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. Length = 220 |
| >gnl|CDD|226961 COG4598, HisP, ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 102 bits (257), Expect = 3e-24
Identities = 82/239 (34%), Positives = 120/239 (50%), Gaps = 58/239 (24%)
Query: 409 AGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNI----------KGLD---LKW 455
AG +++++G SGSGKST + I +P +G I ++G I K D L+
Sbjct: 31 AGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKDGQLKPADKRQLQR 90
Query: 456 LRQQIGLVNQEPALFA-TTIRENILYG--------KDDATMEEITRAAKLSEAMSFISNL 506
LR ++G+V Q L++ T+ EN++ K +A I RA
Sbjct: 91 LRTRLGMVFQHFNLWSHMTVLENVIEAPVHVLGVSKAEA----IERA------------- 133
Query: 507 PERFETQVG--ERG----IQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQ 560
E++ +VG E+ LSGGQ+QR+AI+RA+ P ++L DE TSALD E V
Sbjct: 134 -EKYLAKVGIAEKADAYPAHLSGGQQQRVAIARALAMEPEVMLFDEPTSALDPE---LVG 189
Query: 561 EALDRVM-----VGRTTVVVAHRLSTIRN--ADVIAVVQGRKIVKTGSHEELISNPNSA 612
E L +VM GRT VVV H + R+ + VI + QG KI + G E++ NP S
Sbjct: 190 EVL-KVMQDLAEEGRTMVVVTHEMGFARDVSSHVIFLHQG-KIEEEGPPEQVFGNPQSP 246
|
Length = 256 |
| >gnl|CDD|237652 PRK14275, PRK14275, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 103 bits (259), Expect = 3e-24
Identities = 81/289 (28%), Positives = 133/289 (46%), Gaps = 41/289 (14%)
Query: 339 APDITAFIRAKAAAYPIFEMIERDTMSKASSKTGRKLDKLSGHIEFKDVSFCYPSRPDVA 398
A + + A+ A I+ ER +S H+ K+ S Y +
Sbjct: 7 AKETSKSAPAETATRDIYLPPERKKVSGGGKP----------HVVAKNFSIYYG---EFE 53
Query: 399 IFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPL-----SGEILLDGNNIKG--L 451
K DI + + A++G SG GKST + I R + + +G ++ DG +I G
Sbjct: 54 AVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFT 113
Query: 452 DLKWLRQQIGLVNQEPALFATTIRENILYG------KDDATMEEIT----RAAKLSEAMS 501
D LR++IG+V Q+P F +I +NI YG D +EEI R A L + +S
Sbjct: 114 DEVLLRKKIGMVFQKPNPFPKSIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEVS 173
Query: 502 FISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQE 561
+R + + + LSGGQ+QR+ ++R + P ILLLDE TSALD ++ +++
Sbjct: 174 ------DRLD----KNALGLSGGQQQRLCVARTLAVEPEILLLDEPTSALDPKATAKIED 223
Query: 562 ALDRVMVGRTTVVVAHRLSTI-RNADVIAVVQGRKIVKTGSHEELISNP 609
+ + T ++V H + R +D +V+ +L +NP
Sbjct: 224 LIQELRGSYTIMIVTHNMQQASRVSDYTMFFYEGVLVEHAPTAQLFTNP 272
|
Length = 286 |
| >gnl|CDD|184202 PRK13642, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 102 bits (256), Expect = 5e-24
Identities = 65/230 (28%), Positives = 120/230 (52%), Gaps = 9/230 (3%)
Query: 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEI 441
+E +++ F Y DV + I G+ V+++G +GSGKST LI+ +E G++
Sbjct: 5 LEVENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKV 64
Query: 442 LLDGNNIKGLDLKWLRQQIGLVNQEP--ALFATTIRENILYGKDDATMEEITRAAKLSEA 499
+DG + ++ LR++IG+V Q P T+ +++ +G ++ + ++ EA
Sbjct: 65 KIDGELLTAENVWNLRRKIGMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKRVDEA 124
Query: 500 MSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSV 559
+ ++ L F+T+ R LSGGQKQR+A++ I P I++LDE+TS LD +
Sbjct: 125 LLAVNMLD--FKTREPAR---LSGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEI 179
Query: 560 QEALDRV--MVGRTTVVVAHRLSTIRNADVIAVVQGRKIVKTGSHEELIS 607
+ + T + + H L ++D I V++ +I+K + EL +
Sbjct: 180 MRVIHEIKEKYQLTVLSITHDLDEAASSDRILVMKAGEIIKEAAPSELFA 229
|
Length = 277 |
| >gnl|CDD|182716 PRK10771, thiQ, thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 101 bits (254), Expect = 5e-24
Identities = 78/252 (30%), Positives = 122/252 (48%), Gaps = 42/252 (16%)
Query: 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEI 441
++ D+++ Y P +F L + G+ VA++G SG+GKST+++LI F P SG +
Sbjct: 2 LKLTDITWLYHHLPM-----RFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSL 56
Query: 442 LLDGNNIKGLDLKWLRQQIGLVNQEPALFA-TTIRENI---------LYGKDDATMEEIT 491
L+G + R+ + ++ QE LF+ T+ +NI L + I
Sbjct: 57 TLNGQDHTTTPPS--RRPVSMLFQENNLFSHLTVAQNIGLGLNPGLKLNAAQREKLHAIA 114
Query: 492 RAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSAL 551
R + + ++ LP QLSGGQ+QR+A++R +V+ ILLLDE SAL
Sbjct: 115 RQMGIED---LLARLPG-----------QLSGGQRQRVALARCLVREQPILLLDEPFSAL 160
Query: 552 DAESENSVQEALDRVMVGR--TTVVVAHRLSTIRNADVIA-----VVQGRKIVKTGSHEE 604
D + + +V R T ++V+H L +A IA V GR I G +E
Sbjct: 161 DPALRQEMLTLVSQVCQERQLTLLMVSHSLE---DAARIAPRSLVVADGR-IAWDGPTDE 216
Query: 605 LISNPNSAYAAL 616
L+S SA A L
Sbjct: 217 LLSGKASASALL 228
|
Length = 232 |
| >gnl|CDD|226905 COG4525, TauB, ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 102 bits (255), Expect = 6e-24
Identities = 57/178 (32%), Positives = 92/178 (51%), Gaps = 12/178 (6%)
Query: 387 VSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGN 446
+S Y +P + + L I +G++V ++G SG GK+T+++LI F P G I L+G
Sbjct: 9 LSLSYEGKP-RSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGR 67
Query: 447 NIKGLDLKWLRQQIGLVNQEPALFA-TTIRENILYGKDDATMEEITRAAKLSEAMSFISN 505
I+G + G+V Q AL + +N+ +G +E+ R + ++ +
Sbjct: 68 RIEGPG-----AERGVVFQNEALLPWLNVIDNVAFGLQLRGIEKAQRREIAHQMLALVG- 121
Query: 506 LPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEAL 563
E E + QLSGG +QR+ I+RA+ P +LLLDE ALDA + +QE L
Sbjct: 122 -LEGAEHK---YIWQLSGGMRQRVGIARALAVEPQLLLLDEPFGALDALTREQMQELL 175
|
Length = 259 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 106 bits (268), Expect = 6e-24
Identities = 77/266 (28%), Positives = 126/266 (47%), Gaps = 36/266 (13%)
Query: 382 IEFKDVSFCYPS-----RPDVAIF---DKFCLDIPAGKIVALVGGSGSGKSTVISLIERF 433
+E +D+ +P R V D L + G+ + LVG SGSGKST+ + R
Sbjct: 277 LEVEDLRVWFPIKGGFLRRTVDHLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRL 336
Query: 434 YEPLSGEILLDGNNIKGLD---LKWLRQQIGLVNQEPALFAT-----TIRENI-----LY 480
GEI DG +I GL ++ LR+++ +V Q+P + + T+ + I ++
Sbjct: 337 IPS-QGEIRFDGQDIDGLSRKEMRPLRRRMQVVFQDP--YGSLSPRMTVGQIIEEGLRVH 393
Query: 481 GKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPS 540
+ E R + E + R+ + SGGQ+QRIAI+RA++ P
Sbjct: 394 EPKLSAAERDQRVIEALEEVGLDPATRNRYPHE-------FSGGQRQRIAIARALILKPE 446
Query: 541 ILLLDEATSALDAESENSVQEALDRVM--VGRTTVVVAHRLSTIRN-ADVIAVVQGRKIV 597
++LLDE TSALD + V + L + G + + ++H L+ +R + V++ KIV
Sbjct: 447 LILLDEPTSALDRSVQAQVLDLLRDLQQKHGLSYLFISHDLAVVRALCHRVIVMRDGKIV 506
Query: 598 KTGSHEELISNPNSAYAALVQLQEAA 623
+ G E + +NP Y L AA
Sbjct: 507 EQGPTEAVFANPQHEYTR--ALLAAA 530
|
Length = 534 |
| >gnl|CDD|223488 COG0411, LivG, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 101 bits (255), Expect = 7e-24
Identities = 62/226 (27%), Positives = 107/226 (47%), Gaps = 22/226 (9%)
Query: 401 DKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQI 460
+ L++ G+IV L+G +G+GK+T+ +LI FY+P SG ++ G +I GL ++
Sbjct: 21 NDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPH-RIARL 79
Query: 461 GLVN--QEPALFAT-TIRENILYGKDDATMEEITRAAKLS---------EAMSFIS--NL 506
G+ Q LF T+ EN+ G + A + L
Sbjct: 80 GIARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGL 139
Query: 507 PERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRV 566
E + G LS GQ++R+ I+RA+ P +LLLDE + L+ E + E + +
Sbjct: 140 GELADRPAGN----LSYGQQRRLEIARALATQPKLLLLDEPAAGLNPEETEELAELIREL 195
Query: 567 --MVGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELISNP 609
G T +++ H + + AD I V+ +++ G+ EE+ +NP
Sbjct: 196 RDRGGVTILLIEHDMKLVMGLADRIVVLNYGEVIAEGTPEEVRNNP 241
|
Length = 250 |
| >gnl|CDD|172756 PRK14268, PRK14268, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 102 bits (254), Expect = 7e-24
Identities = 68/246 (27%), Positives = 120/246 (48%), Gaps = 30/246 (12%)
Query: 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYE----- 435
I+ ++++ Y + + IP + AL+G SG GKST I + R +
Sbjct: 12 QIKVENLNLWYGEK---QALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNC 68
Query: 436 PLSGEILLDGNNI--KGLDLKWLRQQIGLVNQEPALFATTIRENILYG--------KD-D 484
+ G++ ++G +I +D+ LR+ +G+V Q+P F +I +N+ YG KD D
Sbjct: 69 RIEGKVSIEGEDIYEPDVDVVELRKNVGMVFQKPNPFPMSIYDNVAYGPRIHGANKKDLD 128
Query: 485 ATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLL 544
+E R+A L + S +R ++ + LSGGQ+QR+ I+R + P I+L
Sbjct: 129 GVVENALRSAALWDETS------DRLKSP----ALSLSGGQQQRLCIARTLAVKPKIILF 178
Query: 545 DEATSALDAESENSVQEALDRVMVGRTTVVVAHRL-STIRNADVIAVVQGRKIVKTGSHE 603
DE TSALD S +++ + + T V+V H + R +D ++++ G
Sbjct: 179 DEPTSALDPISTARIEDLIMNLKKDYTIVIVTHNMQQAARISDYTGFFLMGELIEFGQTR 238
Query: 604 ELISNP 609
++ NP
Sbjct: 239 QIFHNP 244
|
Length = 258 |
| >gnl|CDD|226963 COG4604, CeuD, ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 101 bits (254), Expect = 7e-24
Identities = 69/240 (28%), Positives = 129/240 (53%), Gaps = 24/240 (10%)
Query: 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEI 441
I ++VS Y ++ + D LDIP G I +++G +G+GKST++S++ R + SGEI
Sbjct: 2 ITIENVSKSYGTKV---VLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEI 58
Query: 442 LLDGNNIKGLDLKWLRQQIGLVNQEPALFAT-TIRENILYG-----KDDATMEEITRAAK 495
+DG + K L +++ ++ QE + + T+R+ + +G + T E+
Sbjct: 59 TIDGLELTSTPSKELAKKLSILKQENHINSRLTVRDLVGFGRFPYSQGRLTKED---RRI 115
Query: 496 LSEAMSF--ISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDA 553
++EA+ + + +L +R+ +LSGGQ+QR I+ + ++ +LLDE + LD
Sbjct: 116 INEAIEYLHLEDLSDRYLD-------ELSGGQRQRAFIAMVLAQDTDYVLLDEPLNNLDM 168
Query: 554 ESENSVQEALDRVM--VGRTTVVVAHRLS-TIRNADVIAVVQGRKIVKTGSHEELISNPN 610
+ + + L R+ +G+T VVV H ++ +D I ++ K+VK GS +E+I
Sbjct: 169 KHSVQIMKILRRLADELGKTIVVVLHDINFASCYSDHIVALKNGKVVKQGSPDEIIQPEI 228
|
Length = 252 |
| >gnl|CDD|213231 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Score = 100 bits (251), Expect = 8e-24
Identities = 59/226 (26%), Positives = 116/226 (51%), Gaps = 22/226 (9%)
Query: 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEI 441
++ ++++ Y + D L + G + L+G +G+GK+T++ ++ P SG I
Sbjct: 1 LQLENLTKRYGKK---RALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTI 56
Query: 442 LLDGNNIKGLDLKWLRQQIGLVNQEPALFAT-TIRE-----NILYGKDDATMEEITRAAK 495
+DG ++ + LR++IG + QE ++ T+RE L G ++ R +
Sbjct: 57 RIDGQDVLK-QPQKLRRRIGYLPQEFGVYPNFTVREFLDYIAWLKGIPSKEVKA--RVDE 113
Query: 496 LSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAES 555
+ E + NL +R + ++G LSGG ++R+ I++A+V +PSIL++DE T+ LD E
Sbjct: 114 VLELV----NLGDRAKKKIG----SLSGGMRRRVGIAQALVGDPSILIVDEPTAGLDPEE 165
Query: 556 ENSVQEALDRVMVGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTG 600
+ L + R ++ H + + + + +AV+ K+V G
Sbjct: 166 RIRFRNLLSELGEDRIVILSTHIVEDVESLCNQVAVLNKGKLVFEG 211
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|237457 PRK13647, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 102 bits (255), Expect = 8e-24
Identities = 66/243 (27%), Positives = 119/243 (48%), Gaps = 22/243 (9%)
Query: 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEI 441
IE +D+ F Y L IP G AL+G +G+GKST++ + Y P G +
Sbjct: 5 IEVEDLHFRYKD--GTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRV 62
Query: 442 LLDGNNIKGLDLKWLRQQIGLVNQEP--ALFATTIRENILYGK-----DDATMEEITRAA 494
+ G + + KW+R ++GLV Q+P +F++T+ +++ +G D +E A
Sbjct: 63 KVMGREVNAENEKWVRSKVGLVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEA 122
Query: 495 KLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAE 554
+ M + P LS GQK+R+AI+ + +P +++LDE + LD
Sbjct: 123 LKAVRMWDFRDKPPY----------HLSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPR 172
Query: 555 SENSVQEALDRVMVGRTTVVVA-HRLS-TIRNADVIAVVQGRKIVKTGSHEELISNPNSA 612
+ ++ E LDR+ TV+VA H + AD + V++ +++ G + L+++ +
Sbjct: 173 GQETLMEILDRLHNQGKTVIVATHDVDLAAEWADQVIVLKEGRVLAEGD-KSLLTDEDIV 231
Query: 613 YAA 615
A
Sbjct: 232 EQA 234
|
Length = 274 |
| >gnl|CDD|131266 TIGR02211, LolD_lipo_ex, lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Score = 100 bits (251), Expect = 9e-24
Identities = 67/214 (31%), Positives = 106/214 (49%), Gaps = 20/214 (9%)
Query: 396 DVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGL---D 452
D + L I G+IVA+VG SGSGKST++ L+ P SGE+L +G ++ L +
Sbjct: 17 DTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNE 76
Query: 453 LKWLR-QQIGLVNQEPALFAT-TIRENI----LYGKDDATMEEITRAAKLSEAMSFISNL 506
LR +++G + Q L T EN+ L GK E RA ++ E + L
Sbjct: 77 RAKLRNKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVK-EAKERAYEMLEKV----GL 131
Query: 507 PERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRV 566
R + E LSGG++QR+AI+RA+V PS++L DE T LD + + + + +
Sbjct: 132 EHRINHRPSE----LSGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLEL 187
Query: 567 MVGRTT--VVVAHRLSTIRNADVIAVVQGRKIVK 598
T +VV H L + D + ++ ++
Sbjct: 188 NRELNTSFLVVTHDLELAKKLDRVLEMKDGQLFN 221
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina [Protein fate, Protein and peptide secretion and trafficking]. Length = 221 |
| >gnl|CDD|184588 PRK14243, PRK14243, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 101 bits (254), Expect = 1e-23
Identities = 67/201 (33%), Positives = 108/201 (53%), Gaps = 26/201 (12%)
Query: 405 LDIPAGKIVALVGGSGSGKSTVI-------SLIERFYEPLSGEILLDGNNI--KGLDLKW 455
LDIP +I A +G SG GKST++ LI F + G++ G N+ +D
Sbjct: 31 LDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFR--VEGKVTFHGKNLYAPDVDPVE 88
Query: 456 LRQQIGLVNQEPALFATTIRENILYG------KDDATMEEITRAAKLSEAMSFISNLPER 509
+R++IG+V Q+P F +I +NI YG K D M+E+ + L +A L +
Sbjct: 89 VRRRIGMVFQKPNPFPKSIYDNIAYGARINGYKGD--MDELVERS-LRQAA-----LWDE 140
Query: 510 FETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVG 569
+ ++ + G+ LSGGQ+QR+ I+RAI P ++L+DE SALD S ++E + +
Sbjct: 141 VKDKLKQSGLSLSGGQQQRLCIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKEQ 200
Query: 570 RTTVVVAHRL-STIRNADVIA 589
T ++V H + R +D+ A
Sbjct: 201 YTIIIVTHNMQQAARVSDMTA 221
|
Length = 264 |
| >gnl|CDD|172761 PRK14273, PRK14273, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 101 bits (252), Expect = 1e-23
Identities = 69/230 (30%), Positives = 111/230 (48%), Gaps = 20/230 (8%)
Query: 396 DVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYE-----PLSGEILLDGNNI-- 448
D + + I I AL+G SG GKST + + R + + G ++ +G NI
Sbjct: 19 DFKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYS 78
Query: 449 KGLDLKWLRQQIGLVNQEPALFATTIRENILYG------KDDATMEEITRAAKLSEAMSF 502
D+ LR++IG+V Q P F +I +NI YG KD ++EI + A
Sbjct: 79 NNFDILELRRKIGMVFQTPNPFLMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSA--- 135
Query: 503 ISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEA 562
L + ++ + LSGGQ+QR+ I+R + P+++L+DE TSALD S ++E
Sbjct: 136 ---LWNEVKDKLNTNALSLSGGQQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEEL 192
Query: 563 LDRVMVGRTTVVVAHRLSTI-RNADVIAVVQGRKIVKTGSHEELISNPNS 611
+ + T ++V H + R +D A I + S +EL NP +
Sbjct: 193 IINLKESYTIIIVTHNMQQAGRISDRTAFFLNGCIEEESSTDELFFNPKN 242
|
Length = 254 |
| >gnl|CDD|172200 PRK13652, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 101 bits (254), Expect = 1e-23
Identities = 68/236 (28%), Positives = 120/236 (50%), Gaps = 16/236 (6%)
Query: 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEI 441
IE +D+ CY + P +A++G +G+GKST+ +P SG +
Sbjct: 4 IETRDL--CYSYSGSKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSV 61
Query: 442 LLDGNNIKGLDLKWLRQQIGLVNQEP--ALFATTIRENILYGKDDATMEEITRAAKLSEA 499
L+ G I +++ +R+ +GLV Q P +F+ T+ ++I +G + ++E T A ++S A
Sbjct: 62 LIRGEPITKENIREVRKFVGLVFQNPDDQIFSPTVEQDIAFGPINLGLDEETVAHRVSSA 121
Query: 500 MSF--ISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESEN 557
+ + L +R LSGG+K+R+AI+ I P +L+LDE T+ LD +
Sbjct: 122 LHMLGLEELRDRVPH-------HLSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVK 174
Query: 558 SVQEALDRVMV--GRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELISNPN 610
+ + L+ + G T + H+L + AD I V+ +IV G+ EE+ P+
Sbjct: 175 ELIDFLNDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGRIVAYGTVEEIFLQPD 230
|
Length = 277 |
| >gnl|CDD|215640 PLN03232, PLN03232, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 107 bits (269), Expect = 2e-23
Identities = 71/228 (31%), Positives = 116/228 (50%), Gaps = 14/228 (6%)
Query: 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEI 441
I K+ F + S+ L+IP G +VA+VGG+G GK+++IS +
Sbjct: 615 ISIKNGYFSWDSKTSKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETSS 674
Query: 442 LLDGNNIKGLDLKWLRQQIGLVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMS 501
++ +R + V Q +F T+RENIL+G D + E RA ++
Sbjct: 675 VV------------IRGSVAYVPQVSWIFNATVRENILFGSDFES-ERYWRAIDVTALQH 721
Query: 502 FISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSV-Q 560
+ LP R T++GERG+ +SGGQKQR++++RA+ N I + D+ SALDA + V
Sbjct: 722 DLDLLPGRDLTEIGERGVNISGGQKQRVSMARAVYSNSDIYIFDDPLSALDAHVAHQVFD 781
Query: 561 EALDRVMVGRTTVVVAHRLSTIRNADVIAVVQGRKIVKTGSHEELISN 608
+ + G+T V+V ++L + D I +V I + G+ EL +
Sbjct: 782 SCMKDELKGKTRVLVTNQLHFLPLMDRIILVSEGMIKEEGTFAELSKS 829
|
Length = 1495 |
| >gnl|CDD|184584 PRK14238, PRK14238, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 101 bits (252), Expect = 2e-23
Identities = 68/219 (31%), Positives = 108/219 (49%), Gaps = 20/219 (9%)
Query: 405 LDIPAGKIVALVGGSGSGKSTVISLIERFYEPL-----SGEILLDGNNI--KGLDLKWLR 457
LDI ++ A++G SG GKST I + R E + +G+IL NI K ++ LR
Sbjct: 45 LDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYSVEELR 104
Query: 458 QQIGLVNQEPALFATTIRENILYG------KDDATMEEITRAAKLSEAMSFISNLPERFE 511
+G+V Q+P F +I +N+ YG KD T++EI K + L +R
Sbjct: 105 TNVGMVFQKPNPFPKSIYDNVTYGPKIHGIKDKKTLDEI--VEKSLRGAAIWDELKDRLH 162
Query: 512 TQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRT 571
LSGGQ+QR+ I+R + P ++L+DE TSALD S V+E + + +
Sbjct: 163 DN----AYGLSGGQQQRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKKDYS 218
Query: 572 TVVVAHRL-STIRNADVIAVVQGRKIVKTGSHEELISNP 609
++V H + R +D A + + +++ SNP
Sbjct: 219 IIIVTHNMQQAARISDKTAFFLNGYVNEYDDTDKIFSNP 257
|
Length = 271 |
| >gnl|CDD|213257 cd03290, ABCC_SUR1_N, ATP-binding cassette domain of the sulfonylurea receptor, subfamily C | Back alignment and domain information |
|---|
Score = 99.7 bits (248), Expect = 2e-23
Identities = 67/209 (32%), Positives = 109/209 (52%), Gaps = 13/209 (6%)
Query: 395 PDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLK 454
+A + IP G++ +VG G GKS+++ I + L G++ N +
Sbjct: 12 SGLATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFE 71
Query: 455 WL----RQQIGLVNQEPALFATTIRENILYGK--DDATMEEITRAAKLSEAMSFISNLPE 508
R + Q+P L T+ ENI +G + + +T A L I LP
Sbjct: 72 ATRSRNRYSVAYAAQKPWLLNATVEENITFGSPFNKQRYKAVTDACSLQPD---IDLLPF 128
Query: 509 RFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAE-SENSVQEALDRVM 567
+T++GERGI LSGGQ+QRI ++RA+ +N +I+ LD+ SALD S++ +QE + + +
Sbjct: 129 GDQTEIGERGINLSGGQRQRICVARALYQNTNIVFLDDPFSALDIHLSDHLMQEGILKFL 188
Query: 568 VG--RTTVVVAHRLSTIRNAD-VIAVVQG 593
RT V+V H+L + +AD +IA+ G
Sbjct: 189 QDDKRTLVLVTHKLQYLPHADWIIAMKDG 217
|
The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 218 |
| >gnl|CDD|213265 cd03298, ABC_ThiQ_thiamine_transporter, ATP-binding cassette domain of the thiamine transport system | Back alignment and domain information |
|---|
Score = 99.5 bits (248), Expect = 2e-23
Identities = 63/233 (27%), Positives = 107/233 (45%), Gaps = 36/233 (15%)
Query: 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEI 441
+ + F Y +P F L G+I A+VG SGSGKST+++LI F P SG +
Sbjct: 1 VRLDKIRFSYGEQP----MH-FDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRV 55
Query: 442 LLDGNNIKGLDLKWLRQQIGLVNQEPALFA-TTIRENI---------LYGKDDATMEEIT 491
L++G ++ + + ++ QE LFA T+ +N+ L +D +E
Sbjct: 56 LINGVDVTAAPPA--DRPVSMLFQENNLFAHLTVEQNVGLGLSPGLKLTAEDRQAIEVAL 113
Query: 492 RAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSAL 551
L+ LP +LSGG++QR+A++R +V++ +LLLDE +AL
Sbjct: 114 ARVGLAG---LEKRLPG-----------ELSGGERQRVALARVLVRDKPVLLLDEPFAAL 159
Query: 552 DAESENSVQEALDRV--MVGRTTVVVAHRLSTIRNAD--VIAVVQGRKIVKTG 600
D + + + + T ++V H+ + V+ + GR I G
Sbjct: 160 DPALRAEMLDLVLDLHAETKMTVLMVTHQPEDAKRLAQRVVFLDNGR-IAAQG 211
|
Part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|184195 PRK13635, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 101 bits (253), Expect = 2e-23
Identities = 70/237 (29%), Positives = 118/237 (49%), Gaps = 28/237 (11%)
Query: 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEI 441
I + +SF YP A+ D + G+ VA+VG +GSGKST+ L+ P +G I
Sbjct: 6 IRVEHISFRYPDAATYALKD-VSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTI 64
Query: 442 LLDGNNIKGLDLKWLRQQIGLVNQEP--ALFATTIRENILYGKD------DATMEEITRA 493
+ G + + +R+Q+G+V Q P T+++++ +G + + +E + +A
Sbjct: 65 TVGGMVLSEETVWDVRRQVGMVFQNPDNQFVGATVQDDVAFGLENIGVPREEMVERVDQA 124
Query: 494 AKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDA 553
+ F++ P R LSGGQKQR+AI+ + P I++LDEATS LD
Sbjct: 125 LRQVGMEDFLNREPHR-----------LSGGQKQRVAIAGVLALQPDIIILDEATSMLDP 173
Query: 554 ESENSVQEALD--RVMV--GRTTVV-VAHRLSTIRNADVIAVVQGRKIVKTGSHEEL 605
+E L+ R + TV+ + H L AD + V+ +I++ G+ EE+
Sbjct: 174 RGR---REVLETVRQLKEQKGITVLSITHDLDEAAQADRVIVMNKGEILEEGTPEEI 227
|
Length = 279 |
| >gnl|CDD|236997 PRK11831, PRK11831, putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Score = 100 bits (252), Expect = 2e-23
Identities = 77/242 (31%), Positives = 123/242 (50%), Gaps = 26/242 (10%)
Query: 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEI 441
++ + VSF +R IFD L +P GKI A++G SG GK+T++ LI P GEI
Sbjct: 8 VDMRGVSFTRGNRC---IFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEI 64
Query: 442 LLDGNNIKGLDLKWL---RQQIGLVNQEPALFA-TTIRENILYGKDDATMEEITRAAKLS 497
L DG NI + L R+++ ++ Q ALF + +N+ Y + E T+ L
Sbjct: 65 LFDGENIPAMSRSRLYTVRKRMSMLFQSGALFTDMNVFDNVAY-----PLREHTQ---LP 116
Query: 498 EAMSFISNLPERFETQVGERGI------QLSGGQKQRIAISRAIVKNPSILLLDEATSAL 551
+ S + + E VG RG +LSGG +R A++RAI P +++ DE
Sbjct: 117 APL-LHSTVMMKLEA-VGLRGAAKLMPSELSGGMARRAALARAIALEPDLIMFDEPFVGQ 174
Query: 552 DAESENSVQEALDRV--MVGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELISN 608
D + + + + + +G T VVV+H + + + AD +V +KIV GS + L +N
Sbjct: 175 DPITMGVLVKLISELNSALGVTCVVVSHDVPEVLSIADHAYIVADKKIVAHGSAQALQAN 234
Query: 609 PN 610
P+
Sbjct: 235 PD 236
|
Length = 269 |
| >gnl|CDD|172760 PRK14272, PRK14272, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 100 bits (250), Expect = 2e-23
Identities = 65/214 (30%), Positives = 117/214 (54%), Gaps = 9/214 (4%)
Query: 405 LDIPAGKIVALVGGSGSGKSTVISLIERFYE-----PLSGEILLDGNNI--KGLDLKWLR 457
LD+ G + AL+G SG GK+T + I R ++ ++G ILLDG +I +D +R
Sbjct: 25 LDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDPVAMR 84
Query: 458 QQIGLVNQEPALFAT-TIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGE 516
+++G+V Q+P F T ++ +N++ G A + + +++E + L + + ++
Sbjct: 85 RRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWDEVKDRLKT 144
Query: 517 RGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVA 576
LSGGQ+QR+ I+RA+ P ILL+DE TSALD S +++ + + T ++V
Sbjct: 145 PATGLSGGQQQRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKKVTTIIIVT 204
Query: 577 HRL-STIRNADVIAVVQGRKIVKTGSHEELISNP 609
H + R +D + +V+ G ++L +NP
Sbjct: 205 HNMHQAARVSDTTSFFLVGDLVEHGPTDQLFTNP 238
|
Length = 252 |
| >gnl|CDD|182331 PRK10247, PRK10247, putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Score = 99.4 bits (248), Expect = 2e-23
Identities = 63/214 (29%), Positives = 106/214 (49%), Gaps = 20/214 (9%)
Query: 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEI 441
++ ++V + I + + AG+ + G SG GKST++ ++ P SG +
Sbjct: 8 LQLQNVGYLAGDAK---ILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTL 64
Query: 442 LLDGNNIKGLDLKWLRQQIGLVNQEPALFATTIRENILYG---KDDATMEEITRAAKLSE 498
L +G +I L + RQQ+ Q P LF T+ +N+++ ++ I +
Sbjct: 65 LFEGEDISTLKPEIYRQQVSYCAQTPTLFGDTVYDNLIFPWQIRNQQPDPAIFLD----D 120
Query: 499 AMSFISNLPERFETQVGERGI-QLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESEN 557
F LP+ + + I +LSGG+KQRI++ R + P +LLLDE TSALD +++
Sbjct: 121 LERF--ALPD----TILTKNIAELSGGEKQRISLIRNLQFMPKVLLLDEITSALDESNKH 174
Query: 558 SVQEALDRVMVGRTTVV--VAHRLSTIRNAD-VI 588
+V E + R + + V V H I +AD VI
Sbjct: 175 NVNEIIHRYVREQNIAVLWVTHDKDEINHADKVI 208
|
Length = 225 |
| >gnl|CDD|182778 PRK10851, PRK10851, sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 102 bits (256), Expect = 2e-23
Identities = 73/222 (32%), Positives = 119/222 (53%), Gaps = 29/222 (13%)
Query: 405 LDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIGLVN 464
LDIP+G++VAL+G SGSGK+T++ +I SG I G ++ L + +++G V
Sbjct: 23 LDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHAR--DRKVGFVF 80
Query: 465 QEPALFA-TTIRENILYG------KDDATMEEI-TRAAKLSEAMSFISNLPERFETQVGE 516
Q ALF T+ +NI +G ++ I + +L E M +++L +R+ Q
Sbjct: 81 QHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLE-MVQLAHLADRYPAQ--- 136
Query: 517 RGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVM------VGR 570
LSGGQKQR+A++RA+ P ILLLDE ALDA+ V++ L R + +
Sbjct: 137 ----LSGGQKQRVALARALAVEPQILLLDEPFGALDAQ----VRKELRRWLRQLHEELKF 188
Query: 571 TTVVVAH-RLSTIRNADVIAVVQGRKIVKTGSHEELISNPNS 611
T+V V H + + AD + V+ I + G+ +++ P +
Sbjct: 189 TSVFVTHDQEEAMEVADRVVVMSQGNIEQAGTPDQVWREPAT 230
|
Length = 353 |
| >gnl|CDD|172759 PRK14271, PRK14271, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 100 bits (251), Expect = 2e-23
Identities = 77/266 (28%), Positives = 128/266 (48%), Gaps = 36/266 (13%)
Query: 376 DKLSGHIEFKDVSFCYPSRPDV---------AIFDKFCLDIPAGKIVALVGGSGSGKSTV 426
++L G DV P+ V + D+ + PA + +L+G +GSGK+T
Sbjct: 4 ERLGGQSGAADVDAAAPAMAAVNLTLGFAGKTVLDQVSMGFPARAVTSLMGPTGSGKTTF 63
Query: 427 ISLIERFYEPLSG-----EILLDGNNIKGL-DLKWLRQQIGLVNQEPALFATTIRENILY 480
+ + R + +SG ++LL G +I D+ R+++G++ Q P F +I +N+L
Sbjct: 64 LRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDVLEFRRRVGMLFQRPNPFPMSIMDNVLA 123
Query: 481 GKDDATMEEITRAAKLSEAMSFISNLPERFETQVG----------ERGIQLSGGQKQRIA 530
G RA KL F R T+VG + +LSGGQ+Q +
Sbjct: 124 G---------VRAHKLVPRKEFRGVAQARL-TEVGLWDAVKDRLSDSPFRLSGGQQQLLC 173
Query: 531 ISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLS-TIRNADVIA 589
++R + NP +LLLDE TSALD + ++E + + T ++V H L+ R +D A
Sbjct: 174 LARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLADRLTVIIVTHNLAQAARISDRAA 233
Query: 590 VVQGRKIVKTGSHEELISNPNSAYAA 615
+ ++V+ G E+L S+P A A
Sbjct: 234 LFFDGRLVEEGPTEQLFSSPKHAETA 259
|
Length = 276 |
| >gnl|CDD|188394 TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Score = 99.7 bits (249), Expect = 3e-23
Identities = 59/178 (33%), Positives = 104/178 (58%), Gaps = 16/178 (8%)
Query: 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEI 441
+E +SF Y +R + D + G+ VAL+G +G+GKST+ SL+ R Y G+I
Sbjct: 2 LEVAGLSFRYGARRAL---DDVSFTVRPGRFVALLGPNGAGKSTLFSLLTRLYVAQEGQI 58
Query: 442 LLDGNNIKGLDLKWLRQQIGLVNQEPAL-FATTIRENILYGKDDATMEEITRA---AKLS 497
+ G++++ L + +G+V Q+P L ++R+N+ Y A + ++RA A+++
Sbjct: 59 SVAGHDLRRAPRAALAR-LGVVFQQPTLDLDLSVRQNLRY---HAALHGLSRAEARARIA 114
Query: 498 EAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAES 555
E ++ + L ER + +V E L+GG ++R+ I+RA++ P++LLLDE T LD S
Sbjct: 115 ELLARLG-LAERADDKVRE----LNGGHRRRVEIARALLHRPALLLLDEPTVGLDPAS 167
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 236 |
| >gnl|CDD|237456 PRK13641, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 100 bits (251), Expect = 3e-23
Identities = 77/248 (31%), Positives = 121/248 (48%), Gaps = 32/248 (12%)
Query: 382 IEFKDVSFCY-PSRPDVAI-FDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSG 439
I+F++V + Y P P D ++ G VALVG +GSGKST++ +P SG
Sbjct: 3 IKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSG 62
Query: 440 EILLDGNNIK----GLDLKWLRQQIGLVNQ--EPALFATTIRENILYGKDD--ATMEEIT 491
I + G +I +LK LR+++ LV Q E LF T+ +++ +G + + +E
Sbjct: 63 TITIAGYHITPETGNKNLKKLRKKVSLVFQFPEAQLFENTVLKDVEFGPKNFGFSEDEAK 122
Query: 492 RAAK-------LSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLL 544
A LSE + IS P FE LSGGQ +R+AI+ + P IL L
Sbjct: 123 EKALKWLKKVGLSEDL--ISKSP--FE---------LSGGQMRRVAIAGVMAYEPEILCL 169
Query: 545 DEATSALDAESENSVQEA-LDRVMVGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSH 602
DE + LD E + + D G T ++V H + + AD + V++ K++K S
Sbjct: 170 DEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMDDVAEYADDVLVLEHGKLIKHASP 229
Query: 603 EELISNPN 610
+E+ S+
Sbjct: 230 KEIFSDKE 237
|
Length = 287 |
| >gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 104 bits (262), Expect = 3e-23
Identities = 70/236 (29%), Positives = 117/236 (49%), Gaps = 37/236 (15%)
Query: 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEI 441
+E + ++ +P V D L + G+I AL+G +G+GKST++ ++ Y+P SGEI
Sbjct: 5 LEMRGITKRFP---GVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEI 61
Query: 442 LLDGN--NIKGLDLKWLRQQIGLVNQEPALFAT-TIRENILYGKDDATMEEI------TR 492
+DG IK +R IG+V+Q L T T+ ENI+ G + + I R
Sbjct: 62 RVDGKEVRIKS-PRDAIRLGIGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARAR 120
Query: 493 AAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALD 552
+LSE + + V + LS G++QR+ I +A+ + +L+LDE T+ L
Sbjct: 121 IKELSERYGLPVDPDAK----VAD----LSVGEQQRVEILKALYRGARLLILDEPTAVL- 171
Query: 553 AESENSVQEALDRVMV--------GRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKT 599
+ QEA D + G+T + + H+L + AD + V++ K+V T
Sbjct: 172 -----TPQEA-DELFEILRRLAAEGKTIIFITHKLKEVMAIADRVTVLRRGKVVGT 221
|
Length = 501 |
| >gnl|CDD|184205 PRK13646, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 100 bits (251), Expect = 4e-23
Identities = 80/268 (29%), Positives = 131/268 (48%), Gaps = 29/268 (10%)
Query: 382 IEFKDVSFCY-PSRP--DVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLS 438
I F +VS+ Y P AI D + GK A+VG +GSGKST+I I +P +
Sbjct: 3 IRFDNVSYTYQKGTPYEHQAIHD-VNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTT 61
Query: 439 GEILLDGNNI----KGLDLKWLRQQIGLVNQ--EPALFATTIRENILYGKDDATM--EEI 490
G + +D I K ++ +R++IG+V Q E LF T+ I++G + M +E+
Sbjct: 62 GTVTVDDITITHKTKDKYIRPVRKRIGMVFQFPESQLFEDTVEREIIFGPKNFKMNLDEV 121
Query: 491 -TRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATS 549
A +L + F ++ + Q+SGGQ ++IAI + NP I++LDE T+
Sbjct: 122 KNYAHRLLMDLGFSRDVMS-------QSPFQMSGGQMRKIAIVSILAMNPDIIVLDEPTA 174
Query: 550 ALDAESENSVQEALDRVMV--GRTTVVVAHRLSTI-RNADVIAVVQGRKIVKTGSHEELI 606
LD +S+ V L + +T ++V+H ++ + R AD + V++ IV S +EL
Sbjct: 175 GLDPQSKRQVMRLLKSLQTDENKTIILVSHDMNEVARYADEVIVMKEGSIVSQTSPKELF 234
Query: 607 SNPNS------AYAALVQLQEAASQQSN 628
+ +VQLQ Q+
Sbjct: 235 KDKKKLADWHIGLPEIVQLQYDFEQKYQ 262
|
Length = 286 |
| >gnl|CDD|172744 PRK14256, PRK14256, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 99.3 bits (247), Expect = 4e-23
Identities = 63/215 (29%), Positives = 117/215 (54%), Gaps = 9/215 (4%)
Query: 405 LDIPAGKIVALVGGSGSGKSTVISLIERFYE-----PLSGEILLDGNNI--KGLDLKWLR 457
+D P + A++G SG GKSTV+ I R ++ ++G+ILLD +I +G+D +R
Sbjct: 25 MDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVDPVSIR 84
Query: 458 QQIGLVNQEPALF-ATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGE 516
+++G+V Q+P F A +I +N++ G + A ++ E+ L + + ++
Sbjct: 85 RRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVKDRLKS 144
Query: 517 RGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVA 576
++LSGGQ+QR+ I+R I P ++L+DE SALD S ++E ++ + T ++V
Sbjct: 145 NAMELSGGQQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKEKYTIIIVT 204
Query: 577 HRL-STIRNADVIAVVQGRKIVKTGSHEELISNPN 610
H + R +D A +V+ G +++ + P
Sbjct: 205 HNMQQAARVSDYTAFFYMGDLVECGETKKIFTTPE 239
|
Length = 252 |
| >gnl|CDD|237650 PRK14265, PRK14265, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 100 bits (249), Expect = 4e-23
Identities = 73/236 (30%), Positives = 110/236 (46%), Gaps = 37/236 (15%)
Query: 405 LDIPAGKIVALVGGSGSGKSTVISLIERFYE-----PLSGEILLDGNNI--KGLDLKWLR 457
L IPA KI+A +G SG GKST++ R + + G +L NI ++ LR
Sbjct: 41 LKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQINSVKLR 100
Query: 458 QQIGLVNQEPALFATTIRENILYGK---------DDATMEEITRAAKLSEAMSFISNLPE 508
+Q+G+V Q P F +I ENI + D+ + + RAA E
Sbjct: 101 RQVGMVFQRPNPFPKSIYENIAFAPRANGYKGNLDELVEDSLRRAAIWEEV--------- 151
Query: 509 RFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMV 568
+ ++ E+G LSGGQ+QR+ I+RAI P +LL+DE SALD S V+E +
Sbjct: 152 --KDKLKEKGTALSGGQQQRLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKE 209
Query: 569 GRTTVVVAHRLSTI-RNADVIAVVQGR---------KIVKTGSHEELISNPNSAYA 614
T ++V H + R AD A K+V+ E++ +P + A
Sbjct: 210 QYTIIMVTHNMQQASRVADWTAFFNTEIDEYGKRRGKLVEFSPTEQMFGSPQTKEA 265
|
Length = 274 |
| >gnl|CDD|226635 COG4161, ArtP, ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 98.8 bits (246), Expect = 6e-23
Identities = 71/238 (29%), Positives = 119/238 (50%), Gaps = 32/238 (13%)
Query: 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEI 441
I+ ++ Y + A+FD LD P G+ + L+G SG+GKS+++ ++ P SG +
Sbjct: 3 IQLNGINCFYGAHQ--ALFD-ITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTL 59
Query: 442 LLDGN---------NIKGLDLKWLRQQIGLVNQEPALFA-TTIRENILYGKDDATMEEIT 491
+ GN + DL R+ +G+V Q+ L+ T++EN++ E
Sbjct: 60 NIAGNHFDFSKTPSDKAIRDL---RRNVGMVFQQYNLWPHLTVQENLI--------EAPC 108
Query: 492 RAAKLS--EAMSFISNLPERFE-TQVGER-GIQLSGGQKQRIAISRAIVKNPSILLLDEA 547
R LS +A++ L +R +R + LSGGQ+QR+AI+RA++ P +LL DE
Sbjct: 109 RVLGLSKDQALARAEKLLKRLRLKPYADRYPLHLSGGQQQRVAIARALMMEPQVLLFDEP 168
Query: 548 TSALDAESENSVQEALDRVM-VGRTTVVVAHRLSTIRN--ADVIAVVQGRKIVKTGSH 602
T+ALD E + + + G T V+V H + R + V+ + G IV+ G
Sbjct: 169 TAALDPEITAQIVSIIKELAETGITQVIVTHEVEVARKTASRVVYMENGH-IVEQGDA 225
|
Length = 242 |
| >gnl|CDD|182980 PRK11124, artP, arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 98.2 bits (245), Expect = 9e-23
Identities = 66/234 (28%), Positives = 117/234 (50%), Gaps = 22/234 (9%)
Query: 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEI 441
I+ ++ Y + A+FD LD P G+ + L+G SG+GKS+++ ++ P SG +
Sbjct: 3 IQLNGINCFYGA--HQALFD-ITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTL 59
Query: 442 LLDGN------NIKGLDLKWLRQQIGLVNQEPALFA-TTIRENILYGKDDATME--EITR 492
+ GN ++ LR+ +G+V Q+ L+ T+++N++ +A +++
Sbjct: 60 NIAGNHFDFSKTPSDKAIRELRRNVGMVFQQYNLWPHLTVQQNLI----EAPCRVLGLSK 115
Query: 493 AAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALD 552
L+ A + L R + + LSGGQ+QR+AI+RA++ P +LL DE T+ALD
Sbjct: 116 DQALARAEKLLERL--RLKPYADRFPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALD 173
Query: 553 AESENSVQEALDRVM-VGRTTVVVAHRLSTIRNA--DVIAVVQGRKIVKTGSHE 603
E + + + G T V+V H + R V+ + G IV+ G
Sbjct: 174 PEITAQIVSIIRELAETGITQVIVTHEVEVARKTASRVVYMENGH-IVEQGDAS 226
|
Length = 242 |
| >gnl|CDD|183133 PRK11432, fbpC, ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 100 bits (252), Expect = 9e-23
Identities = 69/226 (30%), Positives = 118/226 (52%), Gaps = 15/226 (6%)
Query: 396 DVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKW 455
+ D L I G +V L+G SG GK+TV+ L+ +P G+I +DG ++ ++
Sbjct: 18 SNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSIQ- 76
Query: 456 LRQQIGLVNQEPALFA-TTIRENILYGKDDATMEEITRAAKLSEAMSFI--SNLPERFET 512
++ I +V Q ALF ++ EN+ YG + + R ++ EA+ + + +R+
Sbjct: 77 -QRDICMVFQSYALFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELVDLAGFEDRYVD 135
Query: 513 QVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVM--VGR 570
Q+ SGGQ+QR+A++RA++ P +LL DE S LDA S++E + +
Sbjct: 136 QI-------SGGQQQRVALARALILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNI 188
Query: 571 TTVVVAHRLS-TIRNADVIAVVQGRKIVKTGSHEELISNPNSAYAA 615
T++ V H S +D + V+ KI++ GS +EL P S + A
Sbjct: 189 TSLYVTHDQSEAFAVSDTVIVMNKGKIMQIGSPQELYRQPASRFMA 234
|
Length = 351 |
| >gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 104 bits (262), Expect = 1e-22
Identities = 71/220 (32%), Positives = 119/220 (54%), Gaps = 16/220 (7%)
Query: 407 IPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIGLVNQE 466
I + V +VG +GSGKST++ R E GEI ++G I L+ LR+Q ++ Q+
Sbjct: 1333 IAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRELRRQFSMIPQD 1392
Query: 467 PALFATTIRENILYGKD---DATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSG 523
P LF T+R+N+ D +A+ E+ A +L +++ E +++V E G S
Sbjct: 1393 PVLFDGTVRQNV----DPFLEASSAEVWAALELVGLRERVASESEGIDSRVLEGGSNYSV 1448
Query: 524 GQKQRIAISRAIVKNPS-ILLLDEATS----ALDAESENSVQEALDRVMVGRTTVVVAHR 578
GQ+Q + ++RA++K S +L+DEAT+ ALD + + +V A T + +AHR
Sbjct: 1449 GQRQLMCMARALLKKGSGFILMDEATANIDPALDRQIQATVMSAFS----AYTVITIAHR 1504
Query: 579 LSTIRNADVIAVVQGRKIVKTGSHEELISNPNSAYAALVQ 618
L T+ D I V+ + + GS EL+ N S + ++V+
Sbjct: 1505 LHTVAQYDKIIVMDHGAVAEMGSPRELVMNRQSIFHSMVE 1544
|
Length = 1560 |
| >gnl|CDD|223487 COG0410, LivF, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 97.9 bits (245), Expect = 1e-22
Identities = 67/210 (31%), Positives = 107/210 (50%), Gaps = 10/210 (4%)
Query: 405 LDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDL-KWLRQQIGLV 463
L++ G+IVAL+G +G+GK+T++ I P SG I+ DG +I GL + R I V
Sbjct: 24 LEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERARLGIAYV 83
Query: 464 NQEPALFAT-TIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLS 522
+ +F T+ EN+L G +E L E L ER + G LS
Sbjct: 84 PEGRRIFPRLTVEENLLLGAYARRDKEAQER-DLEEVYELFPRLKERRNQRAG----TLS 138
Query: 523 GGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRV--MVGRTTVVVAHRLS 580
GG++Q +AI+RA++ P +LLLDE + L + + EA+ + G T ++V
Sbjct: 139 GGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQNAR 198
Query: 581 TIRN-ADVIAVVQGRKIVKTGSHEELISNP 609
AD V++ +IV +G+ EL+++P
Sbjct: 199 FALEIADRGYVLENGRIVLSGTAAELLADP 228
|
Length = 237 |
| >gnl|CDD|183044 PRK11231, fecE, iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 98.2 bits (245), Expect = 1e-22
Identities = 64/226 (28%), Positives = 107/226 (47%), Gaps = 32/226 (14%)
Query: 399 IFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQ 458
I + L +P GKI AL+G +G GKST++ R P SG + L I L + L +
Sbjct: 17 ILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLAR 76
Query: 459 QIGLVNQE-PALFATTIRENILYGKD----------DATMEEITRAAKLSEAMSFISNLP 507
++ L+ Q T+RE + YG+ + +A + + I++L
Sbjct: 77 RLALLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTR----INHLA 132
Query: 508 ERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVM 567
+R R LSGGQ+QR ++ + ++ ++LLDE T+ LD + Q L R+M
Sbjct: 133 DR-------RLTDLSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLDI----NHQVELMRLM 181
Query: 568 -----VGRTTVVVAHRLS-TIRNADVIAVVQGRKIVKTGSHEELIS 607
G+T V V H L+ R D + V+ ++ G+ EE+++
Sbjct: 182 RELNTQGKTVVTVLHDLNQASRYCDHLVVLANGHVMAQGTPEEVMT 227
|
Length = 255 |
| >gnl|CDD|184593 PRK14258, PRK14258, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 98.6 bits (245), Expect = 1e-22
Identities = 68/251 (27%), Positives = 130/251 (51%), Gaps = 20/251 (7%)
Query: 375 LDKLSGHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFY 434
+ KL I+ ++SF Y ++ I + ++I K+ A++G SG GKST + + R
Sbjct: 1 MSKLIPAIKVNNLSFYYDTQ---KILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMN 57
Query: 435 EPLSGEILLDG------NNI--KGLDLKWLRQQIGLVNQEPALFATTIRENILYGKDDAT 486
E L E+ ++G NI + ++L LR+Q+ +V+ +P LF ++ +N+ YG
Sbjct: 58 E-LESEVRVEGRVEFFNQNIYERRVNLNRLRRQVSMVHPKPNLFPMSVYDNVAYGVKIVG 116
Query: 487 MEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDE 546
+ E+ ++L + + ++ + + LSGGQ+QR+ I+RA+ P +LL+DE
Sbjct: 117 WRPKLEIDDIVESALKDADLWDEIKHKIHKSALDLSGGQQQRLCIARALAVKPKVLLMDE 176
Query: 547 ATSALDAESENSVQEALD--RVMVGRTTVVVAHRLSTI-RNADVIAVVQGR-----KIVK 598
LD + V+ + R+ T V+V+H L + R +D A +G ++V+
Sbjct: 177 PCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLHQVSRLSDFTAFFKGNENRIGQLVE 236
Query: 599 TGSHEELISNP 609
G +++ ++P
Sbjct: 237 FGLTKKIFNSP 247
|
Length = 261 |
| >gnl|CDD|188317 TIGR03415, ABC_choXWV_ATP, choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 101 bits (252), Expect = 1e-22
Identities = 79/267 (29%), Positives = 136/267 (50%), Gaps = 38/267 (14%)
Query: 382 IEFKDVSFCYPSRPD--VAIFDK-------------------FCLDIPAGKIVALVGGSG 420
I FK+V + +PD +A+ D+ LDI G+I L+G SG
Sbjct: 1 IRFKNVDIVFGDQPDEALALLDQGKTREEILDRTGLVLGVHNASLDIEEGEICVLMGLSG 60
Query: 421 SGKSTVISLIERFYEPLSGEILL-DGN---NIKGLD---LKWLRQ-QIGLVNQEPALFA- 471
SGKST++ + G +L+ DG+ ++ D L+ LR ++ +V Q+ AL
Sbjct: 61 SGKSTLLRAVNGLNPVSRGSVLVKDGDGSVDVANCDAATLRRLRTHRVSMVFQQFALLPW 120
Query: 472 TTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAI 531
T+ EN+ +G + M + R ++ E + + L + + + GE LSGG +QR+ +
Sbjct: 121 RTVEENVAFGLEMQGMPKAERRKRVDEQLELV-GLAQWADRKPGE----LSGGMQQRVGL 175
Query: 532 SRAIVKNPSILLLDEATSALDAESENSVQEALDRVM--VGRTTVVVAHRL-STIRNADVI 588
+RA ILL+DE SALD +Q+ L + + +T V V+H L ++ + I
Sbjct: 176 ARAFATEAPILLMDEPFSALDPLIRTQLQDELLELQSKLKKTIVFVSHDLDEALKIGNRI 235
Query: 589 AVVQGRKIVKTGSHEELISNPNSAYAA 615
A+++G +I++ G+ EE++ NP + Y A
Sbjct: 236 AIMEGGRIIQHGTPEEIVLNPANDYVA 262
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines [Transport and binding proteins, Amino acids, peptides and amines]. Length = 382 |
| >gnl|CDD|172751 PRK14263, PRK14263, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 98.2 bits (244), Expect = 1e-22
Identities = 68/225 (30%), Positives = 111/225 (49%), Gaps = 30/225 (13%)
Query: 407 IPAGKIVALVGGSGSGKSTVISLIERFYE-----PLSGEILLDGNNI--KGLDLKWLRQQ 459
I +I +G SG GKSTV+ + R + G + G ++ KG+D +R+
Sbjct: 31 IRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDPVVVRRY 90
Query: 460 IGLVNQEPALFATTIRENILYG------KDDATMEEITRAAKLSEAMSFISNLPERFETQ 513
IG+V Q+P F+ +I +N+ +G K D ++ A+ + L + + +
Sbjct: 91 IGMVFQQPNPFSMSIFDNVAFGLRLNRYKGDL-------GDRVKHALQGAA-LWDEVKDK 142
Query: 514 VGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTV 573
+ G+ LSGGQ+QR+ I+RAI P +LLLDE SALD + V+E + + T
Sbjct: 143 LKVSGLSLSGGQQQRLCIARAIATEPEVLLLDEPCSALDPIATRRVEELMVELKKDYTIA 202
Query: 574 VVAHRL-STIRNADVIA-----VVQGRK---IVKTGSHEELISNP 609
+V H + IR AD A + QG + +V+ G ++ NP
Sbjct: 203 LVTHNMQQAIRVADTTAFFSVDISQGTRTGYLVEMGPTAQIFQNP 247
|
Length = 261 |
| >gnl|CDD|236898 PRK11308, dppF, dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 99.7 bits (249), Expect = 1e-22
Identities = 78/253 (30%), Positives = 119/253 (47%), Gaps = 71/253 (28%)
Query: 403 FCLDIPAGKIVALVGGSGSGKSTV---ISLIERFYEPLSGEILLDGNNIKGLD---LKWL 456
F L+ GK +A+VG SG GKST+ +++IE P GE+ G ++ D K L
Sbjct: 36 FTLE--RGKTLAVVGESGCGKSTLARLLTMIE---TPTGGELYYQGQDLLKADPEAQKLL 90
Query: 457 RQQIGLVNQEPALFATTIRENILYG------KDDATMEE----------ITRAAKLSEAM 500
RQ+I +V Q P YG K +EE R K M
Sbjct: 91 RQKIQIVFQNP------------YGSLNPRKKVGQILEEPLLINTSLSAAERREKALAMM 138
Query: 501 SFISNLPERFETQVGERGIQ-------LSGGQKQRIAISRAIVKNPSILLLDEATSALDA 553
+ +VG R SGGQ+QRIAI+RA++ +P +++ DE SALD
Sbjct: 139 A-----------KVGLRPEHYDRYPHMFSGGQRQRIAIARALMLDPDVVVADEPVSALDV 187
Query: 554 ESENSVQ-EALDRVM-----VGRTTVVVAHRLSTIRNA--DVIAVVQGRKIVKTGSHEEL 605
SVQ + L+ +M +G + V ++H LS + + +V+ + GR V+ G+ E++
Sbjct: 188 ----SVQAQVLNLMMDLQQELGLSYVFISHDLSVVEHIADEVMVMYLGR-CVEKGTKEQI 242
Query: 606 ISNPNSAYA-ALV 617
+NP Y AL+
Sbjct: 243 FNNPRHPYTQALL 255
|
Length = 327 |
| >gnl|CDD|226628 COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 100 bits (250), Expect = 2e-22
Identities = 71/219 (32%), Positives = 114/219 (52%), Gaps = 23/219 (10%)
Query: 403 FCLDI----PAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNI----KGLDLK 454
F LD PA I AL G SGSGK+++I++I P G I L+G + KG+ L
Sbjct: 13 FALDANFTLPARGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLP 72
Query: 455 WLRQQIGLVNQEPALFA-TTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQ 513
+++IG V Q+ LF T+R N+ YG + + + A+ I +L +R
Sbjct: 73 PEKRRIGYVFQDARLFPHYTVRGNLRYGMWKSMRAQFDQLV----ALLGIEHLLDR---- 124
Query: 514 VGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVM--VGRT 571
LSGG+KQR+AI RA++ P +LL+DE ++LD + + L+R+ +
Sbjct: 125 ---YPGTLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKREILPYLERLRDEINIP 181
Query: 572 TVVVAHRLSTI-RNADVIAVVQGRKIVKTGSHEELISNP 609
+ V+H L + R AD + V++ K+ +G EE+ +P
Sbjct: 182 ILYVSHSLDEVLRLADRVVVLENGKVKASGPLEEVWGSP 220
|
Length = 352 |
| >gnl|CDD|182592 PRK10619, PRK10619, histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 97.3 bits (242), Expect = 3e-22
Identities = 78/232 (33%), Positives = 118/232 (50%), Gaps = 43/232 (18%)
Query: 409 AGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGL-------------DLKW 455
AG +++++G SGSGKST + I +P G I+++G I + L+
Sbjct: 30 AGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQLKVADKNQLRL 89
Query: 456 LRQQIGLVNQEPALFA-TTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQV 514
LR ++ +V Q L++ T+ EN+ ME + LS+ + ++ +V
Sbjct: 90 LRTRLTMVFQHFNLWSHMTVLENV--------MEAPIQVLGLSKQEA--RERAVKYLAKV 139
Query: 515 G--ERG-----IQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVM 567
G ER + LSGGQ+QR++I+RA+ P +LL DE TSALD E V E L R+M
Sbjct: 140 GIDERAQGKYPVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPE---LVGEVL-RIM 195
Query: 568 V-----GRTTVVVAHRLSTIRNAD--VIAVVQGRKIVKTGSHEELISNPNSA 612
G+T VVV H + R+ VI + QG KI + G+ E+L NP S
Sbjct: 196 QQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQG-KIEEEGAPEQLFGNPQSP 246
|
Length = 257 |
| >gnl|CDD|163585 TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 96.8 bits (241), Expect = 4e-22
Identities = 60/220 (27%), Positives = 104/220 (47%), Gaps = 22/220 (10%)
Query: 393 SRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLD 452
S I D + P G + L+G +GSGKST++ L+ P +G + L G ++ GL
Sbjct: 10 SAGGRLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLS 69
Query: 453 LKWLRQQIGLVNQE-PALFATTIRENILYGK---------DDATMEEITRAAKLSEAMSF 502
+ +++ LV Q+ T+R+ + G+ D + A A +
Sbjct: 70 RRARARRVALVEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRAL---ARTE 126
Query: 503 ISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEA 562
+S+L +R + LSGG++QR+ ++RA+ + P +LLLDE T+ LD ++
Sbjct: 127 LSHLADRDMST-------LSGGERQRVHVARALAQEPKLLLLDEPTNHLDVRAQLETLAL 179
Query: 563 LDRVMVGRTTVVVA-HRLS-TIRNADVIAVVQGRKIVKTG 600
+ + TVV A H L+ D + V+ G ++V G
Sbjct: 180 VRELAATGVTVVAALHDLNLAASYCDHVVVLDGGRVVAAG 219
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. Length = 256 |
| >gnl|CDD|184200 PRK13640, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 97.2 bits (242), Expect = 5e-22
Identities = 67/241 (27%), Positives = 111/241 (46%), Gaps = 25/241 (10%)
Query: 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGE- 440
+EFK VSF YP + IP G AL+G +GSGKST+ LI P
Sbjct: 6 VEFKHVSFTYPDSK-KPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPN 64
Query: 441 --ILLDGNNIKGLDLKWLRQQIGLVNQEP--ALFATTIRENILYGKDDATMEEITRAAKL 496
I +DG + + +R+++G+V Q P T+ +++ +G ++ RA
Sbjct: 65 SKITVDGITLTAKTVWDIREKVGIVFQNPDNQFVGATVGDDVAFGLEN-------RAVPR 117
Query: 497 SEAMSFISNLPERFETQVGERGIQ------LSGGQKQRIAISRAIVKNPSILLLDEATSA 550
E + + ++ VG LSGGQKQR+AI+ + P I++LDE+TS
Sbjct: 118 PEMIKIVRDVLA----DVGMLDYIDSEPANLSGGQKQRVAIAGILAVEPKIIILDESTSM 173
Query: 551 LDAESENSVQEALDRVMV--GRTTVVVAHRLSTIRNADVIAVVQGRKIVKTGSHEELISN 608
LD + + + + ++ T + + H + AD + V+ K++ GS E+ S
Sbjct: 174 LDPAGKEQILKLIRKLKKKNNLTVISITHDIDEANMADQVLVLDDGKLLAQGSPVEIFSK 233
Query: 609 P 609
Sbjct: 234 V 234
|
Length = 282 |
| >gnl|CDD|224044 COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 96.2 bits (240), Expect = 6e-22
Identities = 59/230 (25%), Positives = 102/230 (44%), Gaps = 26/230 (11%)
Query: 364 MSKASSKTGRKLDKLSGHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGK 423
K ++ IE K+VS + I + G+ A+VG +G+GK
Sbjct: 14 PEPKEPKKRHPIEINEPLIELKNVSVRRNGKK---ILGDLSWQVNPGEHWAIVGPNGAGK 70
Query: 424 STVISLIERFYEPLSGEILLDGNNIKGLDLKW-LRQQIGLVN---QEPALFATTIRENIL 479
+T++SL+ + P SG++ L G + + LR++IGLV+ E T+R+ +L
Sbjct: 71 TTLLSLLTGEHPPSSGDVTLLGRRFGKGETIFELRKRIGLVSSELHERFRVRETVRDVVL 130
Query: 480 YGK--------DDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAI 531
G +D T E++ A L E + F + LS G+++R+ I
Sbjct: 131 SGFFASIGIYQEDLTAEDLAAAQWLLELLGAKHLADRPFGS--------LSQGEQRRVLI 182
Query: 532 SRAIVKNPSILLLDEATSALDAESENSVQEALDRVMV---GRTTVVVAHR 578
+RA+VK+P +L+LDE LD + + L+ + + V H
Sbjct: 183 ARALVKDPELLILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHH 232
|
Length = 257 |
| >gnl|CDD|131817 TIGR02770, nickel_nikD, nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Score = 94.7 bits (236), Expect = 1e-21
Identities = 67/229 (29%), Positives = 102/229 (44%), Gaps = 32/229 (13%)
Query: 405 LDIPAGKIVALVGGSGSGKSTVISLIERFYEP----LSGEILLDGNNIKGLDLKWLRQQI 460
L + G+++ALVG SGSGKS I P SGEILLDG + L ++ + I
Sbjct: 7 LSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIR--GRHI 64
Query: 461 GLVNQEP-----ALF--ATTIRENI-----LYGKDDATMEEITRAAKLSEAMSFISNLPE 508
+ Q P LF E + L + A + E A L + + P
Sbjct: 65 ATIMQNPRTAFNPLFTMGNHAIETLRSLGKLSKQARALILEALEAVGLPDPEEVLKKYP- 123
Query: 509 RFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMV 568
QLSGG QR+ I+ A++ P L+ DE T+ LD ++ V + L +
Sbjct: 124 ----------FQLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQARVLKLLRELRQ 173
Query: 569 GRTT--VVVAHRLSTI-RNADVIAVVQGRKIVKTGSHEELISNPNSAYA 614
T +++ H L + R AD +AV+ +IV+ G+ +E+ NP
Sbjct: 174 LFGTGILLITHDLGVVARIADEVAVMDDGRIVERGTVKEIFYNPKHETT 222
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous [Transport and binding proteins, Cations and iron carrying compounds]. Length = 230 |
| >gnl|CDD|172745 PRK14257, PRK14257, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 97.1 bits (241), Expect = 1e-21
Identities = 62/205 (30%), Positives = 106/205 (51%), Gaps = 8/205 (3%)
Query: 383 EFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSG--- 439
E ++ +F Y +R + D LDI K+ A +G SG GKST + + + + + G
Sbjct: 82 EIRNFNFWYMNRTKHVLHD-LNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSH 140
Query: 440 --EILLDGNNIKGLDLKWL--RQQIGLVNQEPALFATTIRENILYGKDDATMEEITRAAK 495
EI G N + + L R +IG+V Q+P F +I +N+ YG + + + K
Sbjct: 141 EGEIYFLGTNTRSKKISSLELRTRIGMVFQKPTPFEMSIFDNVAYGPRNNGINDRKILEK 200
Query: 496 LSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAES 555
+ E + L + + + + G LSGGQ+QR+ I+RAI P +LL+DE TSALD +
Sbjct: 201 IVEKSLKSAALWDEVKDDLDKAGNALSGGQQQRLCIARAIALEPEVLLMDEPTSALDPIA 260
Query: 556 ENSVQEALDRVMVGRTTVVVAHRLS 580
++E + + + ++V H ++
Sbjct: 261 TAKIEELILELKKKYSIIIVTHSMA 285
|
Length = 329 |
| >gnl|CDD|106587 PRK13644, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 95.4 bits (237), Expect = 2e-21
Identities = 74/280 (26%), Positives = 130/280 (46%), Gaps = 28/280 (10%)
Query: 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEI 441
I ++VS+ YP + L I G+ + ++G +GSGKST+ + P G++
Sbjct: 2 IRLENVSYSYPD--GTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKV 59
Query: 442 LLDGNNIKGLD------LKWLRQQIGLVNQEP--ALFATTIRENILYGKDDATMEEITRA 493
L + G+D L+ +R+ +G+V Q P T+ E++ +G ++ + I
Sbjct: 60 L-----VSGIDTGDFSKLQGIRKLVGIVFQNPETQFVGRTVEEDLAFGPENLCLPPIEIR 114
Query: 494 AKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDA 553
++ A++ I R + LSGGQ Q +A++ + P L+ DE TS LD
Sbjct: 115 KRVDRALAEIGLEKYRHRSPK-----TLSGGQGQCVALAGILTMEPECLIFDEVTSMLDP 169
Query: 554 ESENSVQEALDRVM-VGRTTVVVAHRLSTIRNADVIAVVQGRKIVKTGSHEELISNPNSA 612
+S +V E + ++ G+T V + H L + +AD I V+ KIV G E ++S+ +
Sbjct: 170 DSGIAVLERIKKLHEKGKTIVYITHNLEELHDADRIIVMDRGKIVLEGEPENVLSDVSLQ 229
Query: 613 Y-----AALVQLQEAASQQSNSSQCPNMGRPLSIKFSREL 647
+L++L E N P S F+ E+
Sbjct: 230 TLGLTPPSLIELAENLKMHGVVIPWENTSSPSS--FAEEI 267
|
Length = 274 |
| >gnl|CDD|172740 PRK14252, PRK14252, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 94.3 bits (234), Expect = 4e-21
Identities = 67/217 (30%), Positives = 112/217 (51%), Gaps = 22/217 (10%)
Query: 411 KIVALVGGSGSGKSTVISLIERFYE-----PLSGEILL--DGNNI--KGLDLKWLRQQIG 461
++ AL+G SG GKST + R ++ GEI+L D NI +D +R +I
Sbjct: 43 QVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSPEVDPIEVRMRIS 102
Query: 462 LVNQEPALFATTIRENILYG------KDDATMEEITRAAKLSEAMSFISNLPERFETQVG 515
+V Q+P F +I EN+ YG K + +EE A + A L + + ++G
Sbjct: 103 MVFQKPNPFPKSIFENVAYGLRIRGVKRRSILEERVENALRNAA------LWDEVKDRLG 156
Query: 516 ERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVV 575
+ LSGGQ+QR+ I+RA+ +P ILL DE TSALD + S++E + + T ++V
Sbjct: 157 DLAFNLSGGQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELISDLKNKVTILIV 216
Query: 576 AHRL-STIRNADVIAVVQGRKIVKTGSHEELISNPNS 611
H + R +D A + ++++ G+ + + P +
Sbjct: 217 THNMQQAARVSDYTAYMYMGELIEFGATDTIFIKPKN 253
|
Length = 265 |
| >gnl|CDD|184596 PRK14267, PRK14267, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 93.0 bits (231), Expect = 7e-21
Identities = 68/221 (30%), Positives = 109/221 (49%), Gaps = 22/221 (9%)
Query: 405 LDIPAGKIVALVGGSGSGKSTVISLIERFYE-----PLSGEILLDGNNIKGLDLKWL--R 457
L IP + AL+G SG GKST++ R E + GE+ L G NI D+ + R
Sbjct: 25 LKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDPIEVR 84
Query: 458 QQIGLVNQEPALFA-TTIRENILYG-------KDDATMEEITRAAKLSEAMSFISNLPER 509
+++G+V Q P F TI +N+ G K ++E A L +A L +
Sbjct: 85 REVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWA-LKKAA-----LWDE 138
Query: 510 FETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVG 569
+ ++ + LSGGQ+QR+ I+RA+ P ILL+DE T+ +D ++E L +
Sbjct: 139 VKDRLNDYPSNLSGGQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKKE 198
Query: 570 RTTVVVAHR-LSTIRNADVIAVVQGRKIVKTGSHEELISNP 609
T V+V H R +D +A + K+++ G ++ NP
Sbjct: 199 YTIVLVTHSPAQAARVSDYVAFLYLGKLIEVGPTRKVFENP 239
|
Length = 253 |
| >gnl|CDD|213258 cd03291, ABCC_CFTR1, ATP-binding cassette domain of the cystic fibrosis transmembrane regulator, subfamily C | Back alignment and domain information |
|---|
Score = 93.4 bits (232), Expect = 9e-21
Identities = 62/204 (30%), Positives = 109/204 (53%), Gaps = 19/204 (9%)
Query: 405 LDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIGLVN 464
L I G+++A+ G +GSGK++++ LI EP G+I G +I +
Sbjct: 58 LKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSG-------------RISFSS 104
Query: 465 QEPALFATTIRENILYG--KDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLS 522
Q + TI+ENI++G D+ + + +A +L E I+ PE+ T +GE GI LS
Sbjct: 105 QFSWIMPGTIKENIIFGVSYDEYRYKSVVKACQLEED---ITKFPEKDNTVLGEGGITLS 161
Query: 523 GGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEA-LDRVMVGRTTVVVAHRLST 581
GGQ+ RI+++RA+ K+ + LLD LD +E + E+ + ++M +T ++V ++
Sbjct: 162 GGQRARISLARAVYKDADLYLLDSPFGYLDVFTEKEIFESCVCKLMANKTRILVTSKMEH 221
Query: 582 IRNADVIAVVQGRKIVKTGSHEEL 605
++ AD I ++ G+ EL
Sbjct: 222 LKKADKILILHEGSSYFYGTFSEL 245
|
The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. Length = 282 |
| >gnl|CDD|184204 PRK13645, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 93.1 bits (231), Expect = 1e-20
Identities = 71/243 (29%), Positives = 119/243 (48%), Gaps = 16/243 (6%)
Query: 378 LSGHIEFKDVSFCYPSRP--DVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISL-----I 430
S I +VS+ Y + + + L K+ ++G +GSGKST+I L I
Sbjct: 3 FSKDIILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLII 62
Query: 431 ERFYEPLSGEILLDGNNIKGLDLKWLRQQIGLVNQEP--ALFATTIRENILYGKDDATME 488
+ + G+ + N K ++K LR++IGLV Q P LF TI ++I +G +
Sbjct: 63 SETGQTIVGDYAIPANLKKIKEVKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNLGEN 122
Query: 489 EITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEAT 548
+ K+ E + + LPE + V +LSGGQK+R+A++ I + + L+LDE T
Sbjct: 123 KQEAYKKVPELLKLVQ-LPEDY---VKRSPFELSGGQKRRVALAGIIAMDGNTLVLDEPT 178
Query: 549 SALDAESENSVQEALDRV--MVGRTTVVVAHRLSTI-RNADVIAVVQGRKIVKTGSHEEL 605
LD + E +R+ + ++V H + + R AD + V+ K++ GS E+
Sbjct: 179 GGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVISIGSPFEI 238
Query: 606 ISN 608
SN
Sbjct: 239 FSN 241
|
Length = 289 |
| >gnl|CDD|226929 COG4559, COG4559, ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 92.4 bits (230), Expect = 1e-20
Identities = 63/239 (26%), Positives = 118/239 (49%), Gaps = 23/239 (9%)
Query: 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEI 441
I +++S+ S + D LD+ G+++A++G +G+GKST++ + P SGE+
Sbjct: 2 IRAENLSY---SLAGRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEV 58
Query: 442 LLDGNNIKGLDLKWLRQQIGLVNQEPAL-FATTIRENILYGK----DDATMEEITRAAKL 496
L+G + + L + ++ Q +L F T++E + G+ EE R A
Sbjct: 59 TLNGVPLNSWPPEELARHRAVLPQNSSLAFPFTVQEVVQMGRIPHRSGREPEEDERIAAQ 118
Query: 497 SEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISR------AIVKNPSILLLDEATSA 550
+ A + +S L R LSGG++QR+ ++R V + L LDE TSA
Sbjct: 119 ALAATDLSGLAGRDYR-------TLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSA 171
Query: 551 LD-AESENSVQEALDRVMVGRTTVVVAHRLS-TIRNADVIAVVQGRKIVKTGSHEELIS 607
LD A ++++ A G + V H L+ + AD I ++ +++ +GS +++++
Sbjct: 172 LDIAHQHHTLRLARQLAREGGAVLAVLHDLNLAAQYADRIVLLHQGRVIASGSPQDVLT 230
|
Length = 259 |
| >gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug resistance protein-like transporters | Back alignment and domain information |
|---|
Score = 89.0 bits (222), Expect = 2e-20
Identities = 33/59 (55%), Positives = 45/59 (76%), Gaps = 1/59 (1%)
Query: 1018 IELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGK 1076
IE + V FSYP RP+ V KD +L ++ G+ +A+VG SGSGKST+L L+LR YDPT+G+
Sbjct: 1 IEFKNVSFSYPGRPKPV-LKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGE 58
|
The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 171 |
| >gnl|CDD|224026 COG1101, PhnK, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 92.0 bits (229), Expect = 2e-20
Identities = 55/190 (28%), Positives = 95/190 (50%), Gaps = 8/190 (4%)
Query: 398 AIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLR 457
+ L+I G V ++G +G+GKST+++ I +P SG+IL+DG ++ +
Sbjct: 20 RALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKKSVAKRA 79
Query: 458 QQIGLVNQEPAL---FATTIRENILYGKDDATMEEITRAAKLSEAMSF---ISNLPERFE 511
+ V Q+P TI EN+ + ++ A SF ++ L E
Sbjct: 80 NLLARVFQDPLAGTAPELTIEENLALAESRGKKRGLSSALNERRRSSFRERLARLGLGLE 139
Query: 512 TQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGR- 570
++ +R LSGGQ+Q +++ A + P ILLLDE T+ALD ++ V E +++
Sbjct: 140 NRLSDRIGLLSGGQRQALSLLMATLHPPKILLLDEHTAALDPKTAEFVMELTAKIVEEHK 199
Query: 571 -TTVVVAHRL 579
TT++V H +
Sbjct: 200 LTTLMVTHNM 209
|
Length = 263 |
| >gnl|CDD|183056 PRK11248, tauB, taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 91.7 bits (228), Expect = 2e-20
Identities = 55/178 (30%), Positives = 93/178 (52%), Gaps = 16/178 (8%)
Query: 391 YPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKG 450
Y +P + L + +G+++ ++G SG GK+T+++LI F G I LDG ++G
Sbjct: 11 YGGKP---ALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEG 67
Query: 451 LDLKWLRQQIGLVNQEPALFA-TTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPER 509
+ G+V Q L +++N+ +G A +E++ R + + + L
Sbjct: 68 PG-----AERGVVFQNEGLLPWRNVQDNVAFGLQLAGVEKMQRLEIAHQMLKKV-GLEG- 120
Query: 510 FETQVGERGI-QLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRV 566
+R I QLSGGQ+QR+ I+RA+ NP +LLLDE ALDA + +Q L ++
Sbjct: 121 ----AEKRYIWQLSGGQRQRVGIARALAANPQLLLLDEPFGALDAFTREQMQTLLLKL 174
|
Length = 255 |
| >gnl|CDD|213235 cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of the bacitracin-resistance transporter | Back alignment and domain information |
|---|
Score = 90.4 bits (225), Expect = 2e-20
Identities = 56/204 (27%), Positives = 101/204 (49%), Gaps = 24/204 (11%)
Query: 405 LDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIGLVN 464
L + G+I +G +G+GK+T + +I +P SGEI DG + + ++IG +
Sbjct: 21 LHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQ--KNIEALRRIGALI 78
Query: 465 QEPALFAT-TIRENI-----LYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERG 518
+ P + T REN+ L G ++E+ + L + + +V
Sbjct: 79 EAPGFYPNLTARENLRLLARLLGIRKKRIDEVLD----------VVGLKDSAKKKVK--- 125
Query: 519 IQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAH 577
S G KQR+ I+ A++ NP +L+LDE T+ LD + ++E + + G T ++ +H
Sbjct: 126 -GFSLGMKQRLGIALALLGNPDLLILDEPTNGLDPDGIKELRELILSLRDQGITVLISSH 184
Query: 578 RLSTIRN-ADVIAVVQGRKIVKTG 600
LS I+ AD I ++ K+++ G
Sbjct: 185 LLSEIQKVADRIGIINKGKLIEEG 208
|
The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. Length = 208 |
| >gnl|CDD|132050 TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 91.4 bits (227), Expect = 2e-20
Identities = 72/250 (28%), Positives = 118/250 (47%), Gaps = 34/250 (13%)
Query: 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLI---ERFYEPLS 438
+ F DV+ + + + D + AG+ VAL+G SGSGKST++ ++ E E
Sbjct: 1 VRFSDVTKRFG---ILTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDE--- 54
Query: 439 GEILLDGNNIKGLD-------------LKWLRQQIGLVNQEPALFA-TTIRENILYGKDD 484
G+I ++G + + L+ +R +IG+V Q LF T+ +N+ +
Sbjct: 55 GQIQVEGEQLYHMPGRNGPLVPADEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVT----E 110
Query: 485 ATMEE--ITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSIL 542
A + + RA AM + + + QLSGGQ+QR+AI+RA+ P ++
Sbjct: 111 APVLVLGMARAEAEKRAMELLDMVG--LADKADHMPAQLSGGQQQRVAIARALAMRPKVM 168
Query: 543 LLDEATSALDAESENSVQEALDRVMVGR--TTVVVAHRLSTIRN-ADVIAVVQGRKIVKT 599
L DE TSALD E V + R+ T ++V H + R AD + +IV+
Sbjct: 169 LFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMGFAREFADRVCFFDKGRIVEQ 228
Query: 600 GSHEELISNP 609
G +E+ P
Sbjct: 229 GKPDEIFRQP 238
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. Length = 252 |
| >gnl|CDD|226647 COG4181, COG4181, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 90.2 bits (224), Expect = 4e-20
Identities = 60/184 (32%), Positives = 93/184 (50%), Gaps = 20/184 (10%)
Query: 405 LDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLD----LKWLRQQI 460
L + G+ VA+VG SGSGKST+++++ +P SGE+ L G + LD + +
Sbjct: 31 LVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARAALRARHV 90
Query: 461 GLVNQEPALFAT-TIRENI---LYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGE 516
G V Q L T EN+ L + +++ + A L EA+ L +R
Sbjct: 91 GFVFQSFHLIPNLTALENVALPLELRGESSADSRAGAKALLEAVG----LGKRLTHYPA- 145
Query: 517 RGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQE---ALDRVMVGRTTV 573
QLSGG++QR+A++RA P +L DE T LD + + + + AL+R G T V
Sbjct: 146 ---QLSGGEQQRVALARAFAGRPDVLFADEPTGNLDRATGDKIADLLFALNR-ERGTTLV 201
Query: 574 VVAH 577
+V H
Sbjct: 202 LVTH 205
|
Length = 228 |
| >gnl|CDD|236554 PRK09536, btuD, corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 93.8 bits (233), Expect = 4e-20
Identities = 65/238 (27%), Positives = 117/238 (49%), Gaps = 21/238 (8%)
Query: 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEI 441
I+ D+S D + D L + G +V LVG +G+GK+T++ I P +G +
Sbjct: 4 IDVSDLSV---EFGDTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTV 60
Query: 442 LLDGNNIKGLDLKWLRQQIGLVNQEPAL-FATTIRENILYGKDD-----ATMEEITRAAK 495
L+ G++++ L + +++ V Q+ +L F +R+ + G+ T E RAA
Sbjct: 61 LVAGDDVEALSARAASRRVASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAA- 119
Query: 496 LSEAMSFISNLPERFET-QVGERGI-QLSGGQKQRIAISRAIVKNPSILLLDEATSALDA 553
+ AM ER Q +R + LSGG++QR+ ++RA+ + +LLLDE T++LD
Sbjct: 120 VERAM-------ERTGVAQFADRPVTSLSGGERQRVLLARALAQATPVLLLDEPTASLDI 172
Query: 554 ESENSVQEALDR-VMVGRTTVVVAHRLS-TIRNADVIAVVQGRKIVKTGSHEELISNP 609
+ E + R V G+T V H L R D + ++ ++ G ++++
Sbjct: 173 NHQVRTLELVRRLVDDGKTAVAAIHDLDLAARYCDELVLLADGRVRAAGPPADVLTAD 230
|
Length = 402 |
| >gnl|CDD|182528 PRK10535, PRK10535, macrolide transporter ATP-binding /permease protein; Provisional | Back alignment and domain information |
|---|
Score = 95.2 bits (237), Expect = 6e-20
Identities = 77/257 (29%), Positives = 122/257 (47%), Gaps = 23/257 (8%)
Query: 382 IEFKDVSFCYPS-RPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGE 440
+E KD+ YPS V + LDI AG++VA+VG SGSGKST+++++ +P SG
Sbjct: 5 LELKDIRRSYPSGEEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGT 64
Query: 441 ILLDGNNIKGLDLKWL----RQQIGLVNQEPALFA-TTIRENILYGKDDATMEEITRAAK 495
+ G ++ LD L R+ G + Q L + T +N+ + A + R +
Sbjct: 65 YRVAGQDVATLDADALAQLRREHFGFIFQRYHLLSHLTAAQNV---EVPAVYAGLERKQR 121
Query: 496 LSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAES 555
L A + L E +V + QLSGGQ+QR++I+RA++ ++L DE T ALD+ S
Sbjct: 122 LLRAQELLQRLG--LEDRVEYQPSQLSGGQQQRVSIARALMNGGQVILADEPTGALDSHS 179
Query: 556 ENSVQEALDRVM-VGRTTVVVAHRLSTIRNAD-VIAVVQGRKIVKTGSHEELISNPNSAY 613
V L ++ G T ++V H A+ VI + G E++ NP +
Sbjct: 180 GEEVMAILHQLRDRGHTVIIVTHDPQVAAQAERVIEIRDG----------EIVRNPPAQE 229
Query: 614 AALVQLQEAASQQSNSS 630
V + S
Sbjct: 230 KVNVAGGTEPVVNTASG 246
|
Length = 648 |
| >gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Score = 95.4 bits (237), Expect = 1e-19
Identities = 61/204 (29%), Positives = 108/204 (52%), Gaps = 19/204 (9%)
Query: 405 LDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIGLVN 464
+ G+++A+ G +GSGKS+++ +I EP G+I G +I
Sbjct: 447 FKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEGKIKHSG-------------RISFSP 493
Query: 465 QEPALFATTIRENILYG--KDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLS 522
Q + TI++NI++G D+ + +A +L E I+ PE+ +T +GE GI LS
Sbjct: 494 QTSWIMPGTIKDNIIFGLSYDEYRYTSVIKACQLEED---IALFPEKDKTVLGEGGITLS 550
Query: 523 GGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEA-LDRVMVGRTTVVVAHRLST 581
GGQ+ RI+++RA+ K+ + LLD + LD +E + E+ L ++M +T ++V +L
Sbjct: 551 GGQRARISLARAVYKDADLYLLDSPFTHLDVVTEKEIFESCLCKLMSNKTRILVTSKLEH 610
Query: 582 IRNADVIAVVQGRKIVKTGSHEEL 605
++ AD I ++ G+ EL
Sbjct: 611 LKKADKILLLHEGVCYFYGTFSEL 634
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se [Transport and binding proteins, Anions]. Length = 1490 |
| >gnl|CDD|213236 cd03269, ABC_putative_ATPase, ATP-binding cassette domain of an uncharacterized transporter | Back alignment and domain information |
|---|
Score = 88.1 bits (219), Expect = 1e-19
Identities = 51/208 (24%), Positives = 99/208 (47%), Gaps = 17/208 (8%)
Query: 396 DVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKW 455
V D + G+I L+G +G+GK+T I +I P SGE+L DG +
Sbjct: 12 RVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDIAA--- 68
Query: 456 LRQQIGLVNQEPALF-ATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFE-TQ 513
R +IG + +E L+ + + ++Y + K EA I ER E ++
Sbjct: 69 -RNRIGYLPEERGLYPKMKVIDQLVYLAQLKGL-------KKEEARRRIDEWLERLELSE 120
Query: 514 VGERGI-QLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVM-VGRT 571
+ + +LS G +Q++ A++ +P +L+LDE S LD + +++ + + G+T
Sbjct: 121 YANKRVEELSKGNQQKVQFIAAVIHDPELLILDEPFSGLDPVNVELLKDVIRELARAGKT 180
Query: 572 TVVVAHRLSTIRNA--DVIAVVQGRKIV 597
++ H++ + V+ + +GR ++
Sbjct: 181 VILSTHQMELVEELCDRVLLLNKGRAVL 208
|
This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 210 |
| >gnl|CDD|130252 TIGR01184, ntrCD, nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Score = 88.7 bits (220), Expect = 1e-19
Identities = 65/179 (36%), Positives = 98/179 (54%), Gaps = 17/179 (9%)
Query: 405 LDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIK--GLDLKWLRQQIGL 462
L I G+ ++L+G SG GKST+++LI +P SG ++L+G I G D + Q L
Sbjct: 6 LTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGPDRMVVFQNYSL 65
Query: 463 VNQEPALFATTIRENILYGKDDA--TMEEITRAAKLSEAMSFISNLPERFETQVGERGIQ 520
+ P L T+RENI D + + R A + E ++ + L E + + G Q
Sbjct: 66 L---PWL---TVRENIALAVDRVLPDLSKSERRAIVEEHIALV-GLTEAADKRPG----Q 114
Query: 521 LSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVM--VGRTTVVVAH 577
LSGG KQR+AI+RA+ P +LLLDE ALDA + ++QE L ++ T ++V H
Sbjct: 115 LSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQIWEEHRVTVLMVTH 173
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase [Transport and binding proteins, Anions, Transport and binding proteins, Other]. Length = 230 |
| >gnl|CDD|224060 COG1137, YhbG, ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 89.2 bits (222), Expect = 1e-19
Identities = 67/220 (30%), Positives = 113/220 (51%), Gaps = 29/220 (13%)
Query: 405 LDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDL-KWLRQQIGLV 463
L++ +G+IV L+G +G+GK+T +I P SG+ILLD +I L + K R IG +
Sbjct: 25 LEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKRARLGIGYL 84
Query: 464 NQEPALF-ATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFE-TQV-GERGIQ 520
QE ++F T+ +NI+ A +E + K +E + L E F T + +
Sbjct: 85 PQEASIFRKLTVEDNIM-----AVLEIREKDLKKAERKEELDALLEEFHITHLRDSKAYS 139
Query: 521 LSGGQKQRIAISRAIVKNPSILLLDEATSALD----AESENSVQEALDR---VMVG---- 569
LSGG+++R+ I+RA+ NP +LLDE + +D + + ++ DR V++
Sbjct: 140 LSGGERRRVEIARALAANPKFILLDEPFAGVDPIAVIDIQRIIKHLKDRGIGVLITDHNV 199
Query: 570 RTTVVVAHRLSTIRNADVIAVVQGRKIVKTGSHEELISNP 609
R T+ + R I + V+A GS EE+++N
Sbjct: 200 RETLDICDRAYIISDGKVLA---------EGSPEEIVNNE 230
|
Length = 243 |
| >gnl|CDD|182829 PRK10908, PRK10908, cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Score = 88.4 bits (219), Expect = 1e-19
Identities = 66/199 (33%), Positives = 110/199 (55%), Gaps = 26/199 (13%)
Query: 410 GKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNI---KGLDLKWLRQQIGLVNQE 466
G++ L G SG+GKST++ LI P +G+I G++I K ++ +LR+QIG++ Q+
Sbjct: 28 GEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLRRQIGMIFQD 87
Query: 467 PALFAT-TIREN-----ILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQ 520
L T+ +N I+ G A+ ++I R ++S A+ + L + IQ
Sbjct: 88 HHLLMDRTVYDNVAIPLIIAG---ASGDDIRR--RVSAALDKVGLL-----DKAKNFPIQ 137
Query: 521 LSGGQKQRIAISRAIVKNPSILLLDEATSALD-AESENSVQ--EALDRVMVGRTTVVVAH 577
LSGG++QR+ I+RA+V P++LL DE T LD A SE ++ E +R VG T ++ H
Sbjct: 138 LSGGEQQRVGIARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNR--VGVTVLMATH 195
Query: 578 RLSTI--RNADVIAVVQGR 594
+ I R+ ++ + G
Sbjct: 196 DIGLISRRSYRMLTLSDGH 214
|
Length = 222 |
| >gnl|CDD|213256 cd03289, ABCC_CFTR2, ATP-binding cassette domain 2 of CFTR,subfamily C | Back alignment and domain information |
|---|
Score = 89.5 bits (222), Expect = 2e-19
Identities = 70/268 (26%), Positives = 131/268 (48%), Gaps = 20/268 (7%)
Query: 380 GHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSG 439
G + KD++ Y + A+ + I G+ V L+G +GSGKST++S R G
Sbjct: 1 GQMTVKDLTAKY-TEGGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEG 58
Query: 440 EILLDGNNIKGLDLKWLRQQIGLVNQEPALFATTIRENI-LYGKDDATMEEITRAAKLSE 498
+I +DG + + L+ R+ G++ Q+ +F+ T R+N+ YGK + EEI + A+
Sbjct: 59 DIQIDGVSWNSVPLQKWRKAFGVIPQKVFIFSGTFRKNLDPYGK--WSDEEIWKVAEEVG 116
Query: 499 AMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENS 558
S I P + + + + G LS G KQ + ++R+++ ILLLDE ++ LD +
Sbjct: 117 LKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQV 176
Query: 559 VQEALDRVMVGRTTVVVAHRLSTIRNADVIAVVQGRKIVKTGSHEELISNPNSAYAALVQ 618
+++ L + T ++ HR+ + V++ K+ + S ++L++ +
Sbjct: 177 IRKTLKQAFADCTVILSEHRIEAMLECQRFLVIEENKVRQYDSIQKLLNEKSH------- 229
Query: 619 LQEAAS--------QQSNSSQCPNMGRP 638
++A S + NSS+ RP
Sbjct: 230 FKQAISPSDRLKLFPRRNSSKSKRKPRP 257
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. Length = 275 |
| >gnl|CDD|237453 PRK13633, PRK13633, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 89.0 bits (221), Expect = 2e-19
Identities = 62/238 (26%), Positives = 117/238 (49%), Gaps = 19/238 (7%)
Query: 382 IEFKDVSFCYPSRPD----VAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPL 437
I+ K+VS+ Y S + +A+ D L++ G+ + ++G +GSGKST+ + P
Sbjct: 5 IKCKNVSYKYESNEESTEKLAL-DDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPS 63
Query: 438 SGEILLDGNNIKGLDLKW-LRQQIGLVNQEP--ALFATTIRENILYGKDDATMEEITRAA 494
G++ +DG + + W +R + G+V Q P + AT + E++ +G ++ +
Sbjct: 64 EGKVYVDGLDTSDEENLWDIRNKAGMVFQNPDNQIVATIVEEDVAFGPENLGIPPEEIRE 123
Query: 495 KLSEAMSFISNLPE--RFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALD 552
++ E++ + + E R + LSGGQKQR+AI+ + P ++ DE T+ LD
Sbjct: 124 RVDESLKKV-GMYEYRRHAPHL------LSGGQKQRVAIAGILAMRPECIIFDEPTAMLD 176
Query: 553 AESENSVQEALDRV--MVGRTTVVVAHRLSTIRNADVIAVVQGRKIVKTGSHEELISN 608
V + + G T +++ H + AD I V+ K+V G+ +E+
Sbjct: 177 PSGRREVVNTIKELNKKYGITIILITHYMEEAVEADRIIVMDSGKVVMEGTPKEIFKE 234
|
Length = 280 |
| >gnl|CDD|182561 PRK10575, PRK10575, iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 88.7 bits (220), Expect = 2e-19
Identities = 71/234 (30%), Positives = 115/234 (49%), Gaps = 18/234 (7%)
Query: 385 KDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLD 444
++VSF P R + L PAGK+ L+G +GSGKST++ ++ R P GEILLD
Sbjct: 15 RNVSFRVPGR---TLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLD 71
Query: 445 GNNIKGLDLKWLRQQIG-LVNQEPALFATTIRENILYGKD--DATMEEITRA--AKLSEA 499
++ K +++ L Q PA T+RE + G+ + A K+ EA
Sbjct: 72 AQPLESWSSKAFARKVAYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEA 131
Query: 500 MSFISNLPERFETQVGERGI-QLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENS 558
+S + P + R + LSGG++QR I+ + ++ LLLDE TSALD +
Sbjct: 132 ISLVGLKP------LAHRLVDSLSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVD 185
Query: 559 VQEALDRV--MVGRTTVVVAHRLS-TIRNADVIAVVQGRKIVKTGSHEELISNP 609
V + R+ G T + V H ++ R D + ++G +++ G+ EL+
Sbjct: 186 VLALVHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGEMIAQGTPAELMRGE 239
|
Length = 265 |
| >gnl|CDD|184196 PRK13636, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 89.1 bits (221), Expect = 3e-19
Identities = 62/238 (26%), Positives = 120/238 (50%), Gaps = 31/238 (13%)
Query: 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEI 441
++ +++++ Y ++I G++ A++GG+G+GKST+ + +P SG I
Sbjct: 6 LKVEELNYNYSDGTHA--LKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRI 63
Query: 442 LLDGNNI----KGLDLKWLRQQIGLVNQEP--ALFATTIRENILYG------KDDATMEE 489
L DG I KGL +K LR+ +G+V Q+P LF+ ++ +++ +G +D +
Sbjct: 64 LFDGKPIDYSRKGL-MK-LRESVGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKR 121
Query: 490 ITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATS 549
+ A K + + + + P LS GQK+R+AI+ +V P +L+LDE T+
Sbjct: 122 VDNALKRT-GIEHLKDKPTHC----------LSFGQKKRVAIAGVLVMEPKVLVLDEPTA 170
Query: 550 ALDAESENSVQEALDRVM--VGRTTVVVAHRLSTI--RNADVIAVVQGRKIVKTGSHE 603
LD + + + L + +G T ++ H + + +V + +GR I++ E
Sbjct: 171 GLDPMGVSEIMKLLVEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKE 228
|
Length = 283 |
| >gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Score = 93.4 bits (232), Expect = 4e-19
Identities = 67/257 (26%), Positives = 128/257 (49%), Gaps = 6/257 (2%)
Query: 380 GHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSG 439
G ++ + ++ Y A+ + G+ V L+G +GSGKST++S + R G
Sbjct: 1216 GQMDVQGLTAKYTEAGR-AVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLST-EG 1273
Query: 440 EILLDGNNIKGLDLKWLRQQIGLVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEA 499
EI +DG + + L+ R+ G++ Q+ +F+ T R+N L + + EEI + A+
Sbjct: 1274 EIQIDGVSWNSVTLQTWRKAFGVIPQKVFIFSGTFRKN-LDPYEQWSDEEIWKVAEEVGL 1332
Query: 500 MSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSV 559
S I P++ + + + G LS G KQ + ++R+I+ ILLLDE ++ LD + +
Sbjct: 1333 KSVIEQFPDKLDFVLVDGGYVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQII 1392
Query: 560 QEALDRVMVGRTTVVVAHRLSTIRNADVIAVVQGRKIVKTGSHEELI---SNPNSAYAAL 616
++ L + T ++ HR+ + V++G + + S ++L+ S A +A
Sbjct: 1393 RKTLKQSFSNCTVILSEHRVEALLECQQFLVIEGSSVKQYDSIQKLLNETSLFKQAMSAA 1452
Query: 617 VQLQEAASQQSNSSQCP 633
+L+ + NSS+
Sbjct: 1453 DRLKLFPLHRRNSSKRK 1469
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se [Transport and binding proteins, Anions]. Length = 1490 |
| >gnl|CDD|237451 PRK13631, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 89.5 bits (222), Expect = 4e-19
Identities = 65/243 (26%), Positives = 108/243 (44%), Gaps = 42/243 (17%)
Query: 396 DVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEI-------------- 441
++ + KI ++G SGSGKST+++ + G I
Sbjct: 38 ELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNH 97
Query: 442 --LLDGNNIKGLDLKWLRQQIGLVNQEP--ALFATTIRENILYG-------KDDATMEEI 490
+ + + K + K LR+++ +V Q P LF TI ++I++G K +A
Sbjct: 98 ELITNPYSKKIKNFKELRRRVSMVFQFPEYQLFKDTIEKDIMFGPVALGVKKSEAK---- 153
Query: 491 TRAAKLSEAMSFISNLPER--FETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEAT 548
A M + ER F LSGGQK+R+AI+ + P IL+ DE T
Sbjct: 154 KLAKFYLNKMGLDDSYLERSPFG---------LSGGQKRRVAIAGILAIQPEILIFDEPT 204
Query: 549 SALDAESENS-VQEALDRVMVGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELI 606
+ LD + E+ +Q LD +T V+ H + + AD + V+ KI+KTG+ E+
Sbjct: 205 AGLDPKGEHEMMQLILDAKANNKTVFVITHTMEHVLEVADEVIVMDKGKILKTGTPYEIF 264
Query: 607 SNP 609
++
Sbjct: 265 TDQ 267
|
Length = 320 |
| >gnl|CDD|237419 PRK13536, PRK13536, nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Score = 89.9 bits (223), Expect = 4e-19
Identities = 70/252 (27%), Positives = 125/252 (49%), Gaps = 19/252 (7%)
Query: 359 IERDTMSKASSKTGRKLDKLSGHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGG 418
IER + +K + I+ VS Y + + + + +G+ L+G
Sbjct: 19 IERKHQGISEAKASIPGSMSTVAIDLAGVSKSYGDKA---VVNGLSFTVASGECFGLLGP 75
Query: 419 SGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIGLVNQEPAL-FATTIREN 477
+G+GKST+ +I P +G+I + G + + R +IG+V Q L T+REN
Sbjct: 76 NGAGKSTIARMILGMTSPDAGKITVLGVPVPA-RARLARARIGVVPQFDNLDLEFTVREN 134
Query: 478 IL-YGKDDATMEEITRAAKLSEAMSFISNLPE--RFETQVGERGIQLSGGQKQRIAISRA 534
+L +G+ + + EA+ I +L E R E++ R LSGG K+R+ ++RA
Sbjct: 135 LLVFGR------YFGMSTREIEAV--IPSLLEFARLESKADARVSDLSGGMKRRLTLARA 186
Query: 535 IVKNPSILLLDEATSALDAESENSVQEALDRVMV-GRTTVVVAHRLSTI-RNADVIAVVQ 592
++ +P +L+LDE T+ LD + + + E L ++ G+T ++ H + R D + V++
Sbjct: 187 LINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLE 246
Query: 593 -GRKIVKTGSHE 603
GRKI + H
Sbjct: 247 AGRKIAEGRPHA 258
|
Length = 340 |
| >gnl|CDD|130256 TIGR01188, drrA, daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 89.0 bits (221), Expect = 4e-19
Identities = 57/209 (27%), Positives = 99/209 (47%), Gaps = 19/209 (9%)
Query: 405 LDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIGLVN 464
+ G++ +G +G+GK+T I ++ P SG + G ++ + + +R+ IG+V
Sbjct: 14 FKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVR-EPRKVRRSIGIVP 72
Query: 465 QEPALF-ATTIRENI-----LYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERG 518
Q ++ T REN+ LYG EE RA +L E L E + VG
Sbjct: 73 QYASVDEDLTGRENLEMMGRLYGLPKDEAEE--RAEELLELFE----LGEAADRPVG--- 123
Query: 519 IQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSV-QEALDRVMVGRTTVVVAH 577
SGG ++R+ I+ +++ P +L LDE T+ LD + ++ G T ++ H
Sbjct: 124 -TYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDYIRALKEEGVTILLTTH 182
Query: 578 RLSTIRN-ADVIAVVQGRKIVKTGSHEEL 605
+ D IA++ +I+ G+ EEL
Sbjct: 183 YMEEADKLCDRIAIIDHGRIIAEGTPEEL 211
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc [Transport and binding proteins, Other]. Length = 302 |
| >gnl|CDD|213185 cd03218, ABC_YhbG, ATP-binding cassette component of YhbG transport system | Back alignment and domain information |
|---|
Score = 86.8 bits (216), Expect = 5e-19
Identities = 64/220 (29%), Positives = 106/220 (48%), Gaps = 31/220 (14%)
Query: 405 LDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDL-KWLRQQIGLV 463
L + G+IV L+G +G+GK+T +I +P SG+ILLDG +I L + K R IG +
Sbjct: 21 LSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARLGIGYL 80
Query: 464 NQEPALFAT-TIRENILYGKDDATMEEI--TRAAKLSEAMSFISNLPERFETQVGERGIQ 520
QE ++F T+ ENIL A +E ++ + + + +
Sbjct: 81 PQEASIFRKLTVEENIL-----AVLEIRGLSKKEREEKLEELLEEF--HITHLRKSKASS 133
Query: 521 LSGGQKQRIAISRAIVKNPSILLLDEATSALD----AESENSVQEALDR---VMVG---- 569
LSGG+++R+ I+RA+ NP LLLDE + +D + + ++ DR V++
Sbjct: 134 LSGGERRRVEIARALATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNV 193
Query: 570 RTTVVVAHRLSTIRNADVIAVVQGRKIVKTGSHEELISNP 609
R T+ + R I V+A G+ EE+ +N
Sbjct: 194 RETLSITDRAYIIYEGKVLA---------EGTPEEIAANE 224
|
The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. Length = 232 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 91.2 bits (227), Expect = 7e-19
Identities = 52/199 (26%), Positives = 93/199 (46%), Gaps = 39/199 (19%)
Query: 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEI 441
I +++S Y RP + + L + G+ + LVG +G+GKST++ ++ EP SGE+
Sbjct: 4 ITLENLSLAYGDRP---LLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEV 60
Query: 442 LLDGNNIKGLDLKWLRQQIGLVNQEPALFAT-TIRENIL--YGKDDATMEEITRAA---- 494
++G ++QEP L T+ + ++ +G+ + E+ A
Sbjct: 61 TRPKGL-----------RVGYLSQEPPLDPEKTVLDYVIEGFGELRELLAELEEAYALLA 109
Query: 495 -KLSEAMSFISNLPERFETQVGERGI-----------------QLSGGQKQRIAISRAIV 536
E ++ + L E + E LSGG ++R+A++RA++
Sbjct: 110 DPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDEDRPVSSLSGGWRRRVALARALL 169
Query: 537 KNPSILLLDEATSALDAES 555
+ P +LLLDE T+ LD ES
Sbjct: 170 EEPDLLLLDEPTNHLDLES 188
|
Length = 530 |
| >gnl|CDD|226637 COG4167, SapF, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 87.2 bits (216), Expect = 8e-19
Identities = 58/219 (26%), Positives = 115/219 (52%), Gaps = 23/219 (10%)
Query: 403 FCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIGL 462
F L G+ +A++G +GSGKST+ ++ EP SGEIL++ + + D + ++I +
Sbjct: 34 FTLR--EGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLHFGDYSFRSKRIRM 91
Query: 463 VNQEPALFATTIREN---ILYG--KDDATMEEITRAAKLSEAMSFISNLPERFETQVGER 517
+ Q+P + R IL + + +E R ++ E + + LP+
Sbjct: 92 IFQDPNT-SLNPRLRIGQILDFPLRLNTDLEPEQRRKQIFETLRMVGLLPDHANYYPH-- 148
Query: 518 GIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMV------GRT 571
L+ GQKQR+A++RA++ P I++ DEA ++LD S++ L +M+ G +
Sbjct: 149 --MLAPGQKQRVALARALILRPKIIIADEALASLDM----SMRSQLINLMLELQEKQGIS 202
Query: 572 TVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELISNP 609
+ V + I++ +D + V+ ++V+ GS +++++P
Sbjct: 203 YIYVTQHIGMIKHISDQVLVMHEGEVVERGSTADVLASP 241
|
Length = 267 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 90.4 bits (225), Expect = 1e-18
Identities = 70/234 (29%), Positives = 110/234 (47%), Gaps = 36/234 (15%)
Query: 405 LDIPAGKIVALVGGSGSGKS----TVISLI-ERFYEPLSGEILLDGNNIKGLDLKWLR-- 457
DI AG+ +ALVG SGSGKS +++ L+ SG IL DG ++ + LR
Sbjct: 31 FDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAASERQLRGV 90
Query: 458 --QQIGLVNQEP--ALFAT-TIRENI---------LYGKD-DATMEEITRAAKLSEAMSF 502
+IG++ QEP +L TI + + L A E+ + E
Sbjct: 91 RGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLHRGLSRAAARARALELLELVGIPEPEKR 150
Query: 503 ISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEA 562
+ P +LSGGQ+QR+ I+ A+ P +L+ DE T+ALD + + +
Sbjct: 151 LDAYPH-----------ELSGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDL 199
Query: 563 LDRVM--VGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELISNPNSAY 613
L + +G + + H L +R AD + V+Q +IV+TG+ E L + P Y
Sbjct: 200 LKELQAELGMAILFITHDLGIVRKFADRVYVMQHGEIVETGTTETLFAAPQHPY 253
|
Length = 534 |
| >gnl|CDD|131816 TIGR02769, nickel_nikE, nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Score = 86.4 bits (214), Expect = 2e-18
Identities = 67/239 (28%), Positives = 108/239 (45%), Gaps = 25/239 (10%)
Query: 398 AIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLD---LK 454
+ L I G+ V L+G SG GKST+ L+ +P G + G ++ LD +
Sbjct: 25 PVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRKQRR 84
Query: 455 WLRQQIGLVNQE-PALF--ATTIRENIL-----YGKDDATMEEITRAAKLSEAMSFISNL 506
R+ + LV Q+ P+ T+R+ I D + E+ R A+L + + S
Sbjct: 85 AFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDES-EQKARIAELLDMVGLRSED 143
Query: 507 PERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALD-- 564
++ Q LSGGQ QRI I+RA+ P +++LDEA S LD + + E L
Sbjct: 144 ADKLPRQ-------LSGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKL 196
Query: 565 RVMVGRTTVVVAHRLSTI-RNADVIAVVQGRKIVKTGSHEELISNPNSAYAALVQLQEA 622
+ G + + H L + +AV+ +IV+ +L+S + A LQ A
Sbjct: 197 QQAFGTAYLFITHDLRLVQSFCQRVAVMDKGQIVEECDVAQLLS---FKHPAGRNLQSA 252
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase [Transport and binding proteins, Cations and iron carrying compounds]. Length = 265 |
| >gnl|CDD|213187 cd03220, ABC_KpsT_Wzt, ATP-binding cassette component of polysaccharide transport system | Back alignment and domain information |
|---|
Score = 85.3 bits (212), Expect = 2e-18
Identities = 62/228 (27%), Positives = 97/228 (42%), Gaps = 46/228 (20%)
Query: 382 IEFKDVSFCYPS-------------------RPDVAIFDKFCLDIPAGKIVALVGGSGSG 422
IE ++VS YP+ + ++P G+ + L+G +G+G
Sbjct: 1 IELENVSKSYPTYKGGSSSLKKLGILGRKGEVGEFWALKDVSFEVPRGERIGLIGRNGAG 60
Query: 423 KSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIGLVNQEPALFATTIRENI---- 478
KST++ L+ Y P SG + + G L L G P L T RENI
Sbjct: 61 KSTLLRLLAGIYPPDSGTVTVRGRVSSLLGL-----GGGF---NPEL---TGRENIYLNG 109
Query: 479 -LYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVK 537
L G ++E K+ E + F S L + + V S G K R+A + A
Sbjct: 110 RLLGLSRKEIDE-----KIDEIIEF-SELGDFIDLPVKT----YSSGMKARLAFAIATAL 159
Query: 538 NPSILLLDEATSALDAESENSVQEAL-DRVMVGRTTVVVAHRLSTIRN 584
P ILL+DE + DA + Q L + + G+T ++V+H S+I+
Sbjct: 160 EPDILLIDEVLAVGDAAFQEKCQRRLRELLKQGKTVILVSHDPSSIKR 207
|
The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2. Length = 224 |
| >gnl|CDD|213183 cd03216, ABC_Carb_Monos_I, First domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 83.2 bits (207), Expect = 2e-18
Identities = 50/199 (25%), Positives = 85/199 (42%), Gaps = 65/199 (32%)
Query: 405 LDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIGLVN 464
L + G++ AL+G +G+GKST++ ++ Y+P SGEIL V+
Sbjct: 21 LSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEIL--------------------VD 60
Query: 465 QEPALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGI----Q 520
+ FA+ R A+ GI Q
Sbjct: 61 GKEVSFASP------------------RDAR--------------------RAGIAMVYQ 82
Query: 521 LSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMV-GRTTVVVAHRL 579
LS G++Q + I+RA+ +N +L+LDE T+AL + + + R+ G + ++HRL
Sbjct: 83 LSVGERQMVEIARALARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRL 142
Query: 580 STIRN-ADVIAVV-QGRKI 596
+ AD + V+ GR +
Sbjct: 143 DEVFEIADRVTVLRDGRVV 161
|
This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 163 |
| >gnl|CDD|183244 PRK11629, lolD, lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 84.9 bits (210), Expect = 3e-18
Identities = 61/184 (33%), Positives = 99/184 (53%), Gaps = 24/184 (13%)
Query: 410 GKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGL------DLKWLRQQIGLV 463
G+++A+VG SGSGKST++ L+ P SG+++ +G + L +L+ Q++G +
Sbjct: 35 GEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAELR--NQKLGFI 92
Query: 464 NQEPALFAT-TIRENI----LYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERG 518
Q L T EN+ L GK E +RA ++ A+ E + R
Sbjct: 93 YQFHHLLPDFTALENVAMPLLIGKK-KPAEINSRALEMLAAVGL--------EHRANHRP 143
Query: 519 IQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTT--VVVA 576
+LSGG++QR+AI+RA+V NP ++L DE T LDA + +S+ + L + + T +VV
Sbjct: 144 SELSGGERQRVAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVT 203
Query: 577 HRLS 580
H L
Sbjct: 204 HDLQ 207
|
Length = 233 |
| >gnl|CDD|184203 PRK13643, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 85.2 bits (210), Expect = 6e-18
Identities = 61/231 (26%), Positives = 125/231 (54%), Gaps = 16/231 (6%)
Query: 382 IEFKDVSFCY-PSRP--DVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLS 438
I+F+ V++ Y P+ P A+FD L++ G AL+G +GSGKST++ + +P
Sbjct: 2 IKFEKVNYTYQPNSPFASRALFD-IDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTE 60
Query: 439 GEI----LLDGNNIKGLDLKWLRQQIGLVNQEP--ALFATTIRENILYGKDDATMEEITR 492
G++ ++ + K ++K +R+++G+V Q P LF T+ +++ +G + + +
Sbjct: 61 GKVTVGDIVVSSTSKQKEIKPVRKKVGVVFQFPESQLFEETVLKDVAFGPQNFGIPKEKA 120
Query: 493 AAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALD 552
+E + + E +E + +LSGGQ +R+AI+ + P +L+LDE T+ LD
Sbjct: 121 EKIAAEKLEMVGLADEFWE----KSPFELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLD 176
Query: 553 AESENSVQEALDRV-MVGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGS 601
++ + + + + G+T V+V H + + + AD + +++ I+ G+
Sbjct: 177 PKARIEMMQLFESIHQSGQTVVLVTHLMDDVADYADYVYLLEKGHIISCGT 227
|
Length = 288 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 88.1 bits (219), Expect = 7e-18
Identities = 60/227 (26%), Positives = 103/227 (45%), Gaps = 30/227 (13%)
Query: 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEI 441
+EF++VS Y + I G +A+VG +G+GKST++ L+ PLSG +
Sbjct: 322 LEFENVSKGYD--GGRLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTV 379
Query: 442 LLDGNNIKGLDLKWLRQQIGLVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMS 501
+ G +K IG +Q R+ + D T+ E
Sbjct: 380 KV-GETVK----------IGYFDQH--------RDELD---PDKTVLEELSEGFPDGDEQ 417
Query: 502 FISNLPERF---ETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENS 558
+ RF + LSGG+K R+ +++ +++ P++LLLDE T+ LD ES +
Sbjct: 418 EVRAYLGRFGFTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEA 477
Query: 559 VQEALDRVMVGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEE 604
++EAL G T ++V+H + A I +V+ + G +E+
Sbjct: 478 LEEALLDFE-G-TVLLVSHDRYFLDRVATRIWLVEDKVEEFEGGYED 522
|
Length = 530 |
| >gnl|CDD|226617 COG4133, CcmA, ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 82.7 bits (205), Expect = 8e-18
Identities = 47/192 (24%), Positives = 82/192 (42%), Gaps = 36/192 (18%)
Query: 393 SRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKG-- 450
R + +F + AG+ + + G +G+GK+T++ ++ P +GE+ G I+
Sbjct: 11 ERGERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNVR 70
Query: 451 ----LDLKWLRQQIGLVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNL 506
L +L Q G+ + L T EN+ + + AA + EA+
Sbjct: 71 ESYHQALLYLGHQPGI---KTEL---TALENLHFWQR---FHGSGNAATIWEAL------ 115
Query: 507 PERFETQVGERGI------QLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQ 560
QVG G+ QLS GQ++R+A++R + + +LDE +ALD E
Sbjct: 116 -----AQVGLAGLEDLPVGQLSAGQQRRVALARLWLSPAPLWILDEPFTALDKEGV---- 166
Query: 561 EALDRVMVGRTT 572
L +M
Sbjct: 167 ALLTALMAAHAA 178
|
Length = 209 |
| >gnl|CDD|234199 TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Score = 83.3 bits (207), Expect = 1e-17
Identities = 62/210 (29%), Positives = 100/210 (47%), Gaps = 18/210 (8%)
Query: 404 CLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWL-RQQIGL 462
L++P G++ ++G +G GK+T++ + SG I LDG +I L R I
Sbjct: 20 SLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERARAGIAY 79
Query: 463 VNQEPALFAT-TIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERF---ETQVGERG 518
V Q +F T+ EN+L G + + I E F + +G RG
Sbjct: 80 VPQGREIFPRLTVEENLLTGLA-------ALPRRSRKIPDEI---YELFPVLKEMLGRRG 129
Query: 519 IQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRV--MVGRTTVVVA 576
LSGGQ+Q++AI+RA+V P +LLLDE T + + + R+ G ++V
Sbjct: 130 GDLSGGQQQQLAIARALVTRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVE 189
Query: 577 HRLSTIRN-ADVIAVVQGRKIVKTGSHEEL 605
L R AD V++ ++V +G+ +EL
Sbjct: 190 QYLDFARELADRYYVMERGRVVASGAGDEL 219
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 230 |
| >gnl|CDD|237420 PRK13537, PRK13537, nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Score = 84.9 bits (210), Expect = 1e-17
Identities = 69/237 (29%), Positives = 120/237 (50%), Gaps = 30/237 (12%)
Query: 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEI 441
I+F++V Y D + D + G+ L+G +G+GK+T + ++ P +G I
Sbjct: 8 IDFRNVEKRYG---DKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSI 64
Query: 442 LLDGNNIKGLDLKWLRQQIGLV----NQEPALFATTIRENIL-----YGKDDATMEEITR 492
L G + + RQ++G+V N +P T+REN+L +G A
Sbjct: 65 SLCGEPVPS-RARHARQRVGVVPQFDNLDPDF---TVRENLLVFGRYFGLSAAAARA--L 118
Query: 493 AAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALD 552
L E + L + + +VGE LSGG K+R+ ++RA+V +P +L+LDE T+ LD
Sbjct: 119 VPPLLE----FAKLENKADAKVGE----LSGGMKRRLTLARALVNDPDVLVLDEPTTGLD 170
Query: 553 AESENSVQEALDRVMV-GRTTVVVAHRLSTI-RNADVIAVVQ-GRKIVKTGSHEELI 606
++ + + E L ++ G+T ++ H + R D + V++ GRKI + G+ LI
Sbjct: 171 PQARHLMWERLRSLLARGKTILLTTHFMEEAERLCDRLCVIEEGRKIAE-GAPHALI 226
|
Length = 306 |
| >gnl|CDD|182993 PRK11144, modC, molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 85.7 bits (213), Expect = 1e-17
Identities = 67/216 (31%), Positives = 111/216 (51%), Gaps = 25/216 (11%)
Query: 405 LDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNI----KGLDLKWLRQQI 460
L +PA I A+ G SG+GK+++I+ I P G I+L+G + KG+ L +++I
Sbjct: 19 LTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEKRRI 78
Query: 461 GLVNQEPALFA-TTIRENILYG---KDDATMEEITRAAKLSEAMSFISNLPERFETQVGE 516
G V Q+ LF +R N+ YG A ++I + I L +R+
Sbjct: 79 GYVFQDARLFPHYKVRGNLRYGMAKSMVAQFDKIVA-------LLGIEPLLDRYP----- 126
Query: 517 RGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVM--VGRTTVV 574
LSGG+KQR+AI RA++ P +LL+DE ++LD + + L+R+ + +
Sbjct: 127 --GSLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKRELLPYLERLAREINIPILY 184
Query: 575 VAHRLSTI-RNADVIAVVQGRKIVKTGSHEELISNP 609
V+H L I R AD + V++ K+ G EE+ ++
Sbjct: 185 VSHSLDEILRLADRVVVLEQGKVKAFGPLEEVWASS 220
|
Length = 352 |
| >gnl|CDD|213233 cd03266, ABC_NatA_sodium_exporter, ATP-binding cassette domain of the Na+ transporter | Back alignment and domain information |
|---|
Score = 82.4 bits (204), Expect = 1e-17
Identities = 56/222 (25%), Positives = 106/222 (47%), Gaps = 22/222 (9%)
Query: 388 SFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNN 447
F + A+ D + G++ L+G +G+GK+T + ++ EP +G +DG +
Sbjct: 10 RFRDVKKTVQAV-DGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFD 68
Query: 448 IKGLDLKWLRQQIGLVNQEPALFA-TTIRENI-----LYG-KDDATMEEITRAAKLSEAM 500
+ + R+++G V+ L+ T REN+ LYG K D + A
Sbjct: 69 VVKEPAE-ARRRLGFVSDSTGLYDRLTARENLEYFAGLYGLKGDELTARLEELADRLG-- 125
Query: 501 SFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQ 560
+ L +R R S G +Q++AI+RA+V +P +LLLDE T+ LD + +++
Sbjct: 126 --MEELLDR-------RVGGFSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRALR 176
Query: 561 EALDRVMVGRTTVVVA-HRLSTI-RNADVIAVVQGRKIVKTG 600
E + ++ ++ + H + + R D + V+ ++V G
Sbjct: 177 EFIRQLRALGKCILFSTHIMQEVERLCDRVVVLHRGRVVYEG 218
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein. Length = 218 |
| >gnl|CDD|236947 PRK11650, ugpC, glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 84.9 bits (211), Expect = 2e-17
Identities = 56/156 (35%), Positives = 84/156 (53%), Gaps = 20/156 (12%)
Query: 405 LDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIGLVN 464
LD+ G+ + LVG SG GKST++ ++ SGEI + G + L+ + I +V
Sbjct: 25 LDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEPA--DRDIAMVF 82
Query: 465 QEPALFA-TTIRENILYGKDDATM--EEITR----AAKLSEAMSFISNLPERFETQVGER 517
Q AL+ ++REN+ YG M EI AA++ E + L +R +
Sbjct: 83 QNYALYPHMSVRENMAYGLKIRGMPKAEIEERVAEAARILE----LEPLLDR-------K 131
Query: 518 GIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDA 553
+LSGGQ+QR+A+ RAIV+ P++ L DE S LDA
Sbjct: 132 PRELSGGQRQRVAMGRAIVREPAVFLFDEPLSNLDA 167
|
Length = 356 |
| >gnl|CDD|223473 COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 82.6 bits (205), Expect = 2e-17
Identities = 63/217 (29%), Positives = 97/217 (44%), Gaps = 23/217 (10%)
Query: 399 IFDKFCLDIPAGKIVALVGGSGSGKST---VISLIERFYEPLSGEILLDGNNIKGLDL-K 454
I L + G++ A++G +GSGKST I + YE GEIL DG +I L +
Sbjct: 19 ILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPK-YEVTEGEILFDGEDILELSPDE 77
Query: 455 WLRQQIGLVNQEPALFA-TTIRE------NILYGKDDATMEEITRAAKLSEAMSFISNLP 507
R I L Q P T + N G E I + +E +
Sbjct: 78 RARAGIFLAFQYPVEIPGVTNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDEEFL 137
Query: 508 ERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVM 567
ER+ V E SGG+K+R I + ++ P + +LDE S LD ++ V E ++ +
Sbjct: 138 ERY---VNE---GFSGGEKKRNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALR 191
Query: 568 -VGRTTVVVAHR---LSTIRNADVIAVVQGRKIVKTG 600
GR +++ H L I+ D + V+ +IVK+G
Sbjct: 192 EEGRGVLIITHYQRLLDYIK-PDKVHVLYDGRIVKSG 227
|
Length = 251 |
| >gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Score = 86.3 bits (214), Expect = 3e-17
Identities = 67/214 (31%), Positives = 113/214 (52%), Gaps = 30/214 (14%)
Query: 409 AGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIG--LVNQE 466
AG++ AL+GG+G+GKST++ +I P SG + + GN L Q+G LV QE
Sbjct: 36 AGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLT-PAKAHQLGIYLVPQE 94
Query: 467 PALFAT-TIRENILYG--KDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSG 523
P LF +++ENIL+G K A+M+++ L+ + ++ G L
Sbjct: 95 PLLFPNLSVKENILFGLPKRQASMQKMK--QLLAALGCQLD-----LDSSAG----SLEV 143
Query: 524 GQKQRIAISRAIVKNPSILLLDEATSALD-AESEN---SVQEALDRVMVGRTTVVVAHRL 579
+Q + I R ++++ IL+LDE T++L AE+E ++E L + G V ++H+L
Sbjct: 144 ADRQIVEILRGLMRDSRILILDEPTASLTPAETERLFSRIRELLAQ---GVGIVFISHKL 200
Query: 580 STIRN-ADVIAVVQGRKIVKTG-----SHEELIS 607
IR AD I+V++ I +G S +++I
Sbjct: 201 PEIRQLADRISVMRDGTIALSGKTADLSTDDIIQ 234
|
Length = 510 |
| >gnl|CDD|237422 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 82.5 bits (205), Expect = 3e-17
Identities = 64/241 (26%), Positives = 116/241 (48%), Gaps = 22/241 (9%)
Query: 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEI 441
+E +++S R + D L + G++VA++G +G+GKST++ + P SGE+
Sbjct: 3 LEARNLSVRLGGRT---LLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEV 59
Query: 442 LLDGNNIKGLDLKWLRQQIGLVNQEPAL-FATTIRENILYGKDDATMEEITRAAKLSEAM 500
L+G + L ++ ++ Q +L F T+ E + G+ + A ++ A+
Sbjct: 60 RLNGRPLADWSPAELARRRAVLPQHSSLSFPFTVEEVVAMGRAPHGLSRAEDDALVAAAL 119
Query: 501 SF--ISNLPERFETQVGERGIQLSGGQKQRIAISRAIV------KNPSILLLDEATSALD 552
+ +++L R QLSGG++QR+ ++R + P LLLDE TSALD
Sbjct: 120 AQVDLAHLAGRDYP-------QLSGGEQQRVQLARVLAQLWEPDGPPRWLLLDEPTSALD 172
Query: 553 -AESENSVQEALDRVMVGRTTV-VVAHRLS-TIRNADVIAVVQGRKIVKTGSHEELISNP 609
A + ++ A V VV H L+ R AD I ++ ++V G+ E+++
Sbjct: 173 LAHQHHVLRLARQLAHERGLAVIVVLHDLNLAARYADRIVLLHQGRLVADGTPAEVLTPE 232
Query: 610 N 610
Sbjct: 233 T 233
|
Length = 258 |
| >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Score = 86.0 bits (213), Expect = 3e-17
Identities = 66/249 (26%), Positives = 125/249 (50%), Gaps = 34/249 (13%)
Query: 382 IEFKDVSFCYPS--RPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSG 439
I+ ++VS Y S R V D L++ G+I +VG SG+GK+T+ +I EP SG
Sbjct: 280 IKVRNVSKRYISVDRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSG 339
Query: 440 EI-LLDGNNI-----KGLDLKW-LRQQIGLVNQEPALFA-TTIRENIL------YGKDDA 485
E+ + G+ G D + ++ IG+++QE L+ T+ +N+ + A
Sbjct: 340 EVNVRVGDEWVDMTKPGPDGRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGLELPDELA 399
Query: 486 TMEEI--TRAAKLSE--AMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSI 541
M+ + + E A + P+ +LS G++ R+A+++ ++K P I
Sbjct: 400 RMKAVITLKMVGFDEEKAEEILDKYPD-----------ELSEGERHRVALAQVLIKEPRI 448
Query: 542 LLLDEATSALDAESENSVQEAL--DRVMVGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVK 598
++LDE T +D ++ V ++ R + +T ++V+H + + + D A+++ KIVK
Sbjct: 449 VILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDMDFVLDVCDRAALMRDGKIVK 508
Query: 599 TGSHEELIS 607
G EE++
Sbjct: 509 IGDPEEIVE 517
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520 |
| >gnl|CDD|213218 cd03251, ABCC_MsbA, ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 81.5 bits (202), Expect = 4e-17
Identities = 28/58 (48%), Positives = 41/58 (70%), Gaps = 1/58 (1%)
Query: 1018 IELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAG 1075
+E + V F YP V+ +D +L + AG+++ALVG SGSGKST+++LI RFYD +G
Sbjct: 1 VEFKNVTFRYPGDGPPVL-RDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSG 57
|
MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 234 |
| >gnl|CDD|213220 cd03253, ABCC_ATM1_transporter, ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C | Back alignment and domain information |
|---|
Score = 81.9 bits (203), Expect = 4e-17
Identities = 30/60 (50%), Positives = 40/60 (66%), Gaps = 4/60 (6%)
Query: 1018 IELRGVHFSY-PSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGK 1076
IE V F+Y P RP + KD + + AGK +A+VG SGSGKST+L L+ RFYD ++G
Sbjct: 1 IEFENVTFAYDPGRP---VLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGS 57
|
ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 236 |
| >gnl|CDD|183055 PRK11247, ssuB, aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 82.4 bits (204), Expect = 4e-17
Identities = 64/198 (32%), Positives = 101/198 (51%), Gaps = 27/198 (13%)
Query: 405 LDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIGLVN 464
L IPAG+ VA+VG SG GKST++ L+ P +GE LL G L R+ L+
Sbjct: 33 LHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGE-LLAGTA----PLAEAREDTRLMF 87
Query: 465 QEPALFA-TTIRENI---LYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQ 520
Q+ L + +N+ L G+ + A L++ + E
Sbjct: 88 QDARLLPWKKVIDNVGLGLKGQWRDAALQALAAVGLAD--------------RANEWPAA 133
Query: 521 LSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMV--GRTTVVVAHR 578
LSGGQKQR+A++RA++ P +LLLDE ALDA + +Q+ ++ + G T ++V H
Sbjct: 134 LSGGQKQRVALARALIHRPGLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHD 193
Query: 579 LS-TIRNAD-VIAVVQGR 594
+S + AD V+ + +G+
Sbjct: 194 VSEAVAMADRVLLIEEGK 211
|
Length = 257 |
| >gnl|CDD|182893 PRK11000, PRK11000, maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 84.3 bits (209), Expect = 4e-17
Identities = 70/235 (29%), Positives = 114/235 (48%), Gaps = 33/235 (14%)
Query: 396 DVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKW 455
DV I LDI G+ V VG SG GKST++ +I + SG++ + + D+
Sbjct: 15 DVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMN--DVPP 72
Query: 456 LRQQIGLVNQEPALFA-TTIRENILYGKDDATMEEITRAAKLSEAMSFI--SNLPERFET 512
+ +G+V Q AL+ ++ EN+ +G A ++ ++++ + ++L +R
Sbjct: 73 AERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEEINQRVNQVAEVLQLAHLLDR--- 129
Query: 513 QVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVM----- 567
+ LSGGQ+QR+AI R +V PS+ LLDE S LDA AL RV
Sbjct: 130 ----KPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDA--------AL-RVQMRIEI 176
Query: 568 ------VGRTTVVVAH-RLSTIRNADVIAVVQGRKIVKTGSHEELISNPNSAYAA 615
+GRT + V H ++ + AD I V+ ++ + G EL P + + A
Sbjct: 177 SRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYPANRFVA 231
|
Length = 369 |
| >gnl|CDD|130355 TIGR01288, nodI, ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Score = 83.1 bits (205), Expect = 5e-17
Identities = 66/232 (28%), Positives = 112/232 (48%), Gaps = 27/232 (11%)
Query: 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEI 441
I+ VS Y D + + I G+ L+G +G+GKST+ ++ P G+I
Sbjct: 5 IDLVGVSKSYG---DKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKI 61
Query: 442 LLDGNNIKGLDLKWLRQQIGLVNQEPAL-FATTIRENIL-----YGKDDATMEEITRAAK 495
+ G + + R IG+V Q L T+REN+L +G +E +
Sbjct: 62 TVLGEPVPS-RARLARVAIGVVPQFDNLDPEFTVRENLLVFGRYFGMSTREIEAV----- 115
Query: 496 LSEAMSFISNLPE--RFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDA 553
I +L E R E++ R LSGG K+R+ ++RA++ +P +L+LDE T+ LD
Sbjct: 116 -------IPSLLEFARLESKADVRVALLSGGMKRRLTLARALINDPQLLILDEPTTGLDP 168
Query: 554 ESENSVQEALDRVMV-GRTTVVVAHRLSTI-RNADVIAVVQ-GRKIVKTGSH 602
+ + + E L ++ G+T ++ H + R D + V++ GRKI + H
Sbjct: 169 HARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLESGRKIAEGRPH 220
|
This protein is required for normal nodulation by nitrogen-fixing root nodule bacteria such as Mesorhizobium loti. It is a member of the family of ABC transporter ATP binding proteins and works with NodJ to export a nodulation signal molecule. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans [Cellular processes, Other, Transport and binding proteins, Other]. Length = 303 |
| >gnl|CDD|163452 TIGR03740, galliderm_ABC, gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 80.9 bits (200), Expect = 6e-17
Identities = 58/207 (28%), Positives = 100/207 (48%), Gaps = 26/207 (12%)
Query: 398 AIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLR 457
+ L +P + L+G +G+GKST++ +I P SGEI+ DG+ DL
Sbjct: 14 TAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTRKDLH--- 70
Query: 458 QQIGLVNQEPALFAT-TIRENI-----LYGKDDATMEEITRAAKLSEAMSFISNLPERFE 511
+IG + + P L+ T REN+ L G D+ ++E+ I +L +
Sbjct: 71 -KIGSLIESPPLYENLTARENLKVHTTLLGLPDSRIDEVLN----------IVDLTNTGK 119
Query: 512 TQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRT 571
+ Q S G KQR+ I+ A++ +P +L+LDE T+ LD ++E +
Sbjct: 120 KKAK----QFSLGMKQRLGIAIALLNHPKLLILDEPTNGLDPIGIQELRELIRSFPEQGI 175
Query: 572 TVVV-AHRLSTIRN-ADVIAVVQGRKI 596
TV++ +H LS ++ AD I ++ +
Sbjct: 176 TVILSSHILSEVQQLADHIGIISEGVL 202
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. Length = 223 |
| >gnl|CDD|224057 COG1134, TagH, ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 81.1 bits (201), Expect = 6e-17
Identities = 67/265 (25%), Positives = 109/265 (41%), Gaps = 53/265 (20%)
Query: 353 YPIFEMIERDTMSKASSKTGRKLDKLSGHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKI 412
+ I+ + K++ KD+SF +I G+
Sbjct: 13 FRIYHEKSYSLKKRLKGLAKGGR-KVAEFWALKDISF----------------EIYKGER 55
Query: 413 VALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIGLVNQEPALFAT 472
V ++G +G+GKST++ LI Y+P SG++ + G ++L G +
Sbjct: 56 VGIIGHNGAGKSTLLKLIAGIYKPTSGKVKVTGKVAPLIEL-----GAGFDPE------L 104
Query: 473 TIRENI-LYG--------KDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSG 523
T RENI L G + D ++EI A+L + + + P + S
Sbjct: 105 TGRENIYLRGLILGLTRKEIDEKVDEIIEFAELGDFI----DQPVK----------TYSS 150
Query: 524 GQKQRIAISRAIVKNPSILLLDEATSALDAE-SENSVQEALDRVMVGRTTVVVAHRLSTI 582
G R+A S A P ILLLDE + DA E ++ + V +T V+V+H L I
Sbjct: 151 GMYARLAFSVATHVEPDILLLDEVLAVGDAAFQEKCLERLNELVEKNKTIVLVSHDLGAI 210
Query: 583 RNA-DVIAVVQGRKIVKTGSHEELI 606
+ D ++ +I GS EE+I
Sbjct: 211 KQYCDRAIWLEHGQIRMEGSPEEVI 235
|
Length = 249 |
| >gnl|CDD|236865 PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 84.5 bits (210), Expect = 1e-16
Identities = 38/119 (31%), Positives = 68/119 (57%), Gaps = 6/119 (5%)
Query: 963 FMVLIV-TALAMGETLALVPDLLK--GNQMAAS--VFEVLDRKTQVIGDIGEELTNVEGT 1017
+ L V ALA E L V + G +A++ + E+ ++K +V + +
Sbjct: 279 LIALFVFAALAAFEALMPVAGAFQHLGQVIASARRINEITEQKPEVTFPTTSTAAADQVS 338
Query: 1018 IELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGK 1076
+ L V F+YP +P+ V+ K +L+++AG+ +AL+G++G GKST+L L+ R +DP G+
Sbjct: 339 LTLNNVSFTYPDQPQPVL-KGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGE 396
|
Length = 574 |
| >gnl|CDD|213232 cd03265, ABC_DrrA, Daunorubicin/doxorubicin resistance ATP-binding protein | Back alignment and domain information |
|---|
Score = 79.7 bits (197), Expect = 1e-16
Identities = 58/210 (27%), Positives = 107/210 (50%), Gaps = 20/210 (9%)
Query: 405 LDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIGLVN 464
+ G+I L+G +G+GK+T I ++ +P SG + G+++ + + +R++IG+V
Sbjct: 21 FRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVR-EPREVRRRIGIVF 79
Query: 465 QEPAL-FATTIRENI-----LYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERG 518
Q+ ++ T EN+ LYG A E R +L + + L E + V
Sbjct: 80 QDLSVDDELTGWENLYIHARLYGVPGAERRE--RIDELLDFV----GLLEAADRLVK--- 130
Query: 519 IQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVM--VGRTTVVVA 576
SGG ++R+ I+R++V P +L LDE T LD ++ V E ++++ G T ++
Sbjct: 131 -TYSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTT 189
Query: 577 HRLSTIRN-ADVIAVVQGRKIVKTGSHEEL 605
H + D +A++ +I+ G+ EEL
Sbjct: 190 HYMEEAEQLCDRVAIIDHGRIIAEGTPEEL 219
|
DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|183016 PRK11176, PRK11176, lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Score = 83.9 bits (208), Expect = 2e-16
Identities = 97/338 (28%), Positives = 164/338 (48%), Gaps = 68/338 (20%)
Query: 771 LRVREKMFSAILSNEIGWFDEMDNSSSILASRLESDATL--------LRTIVVDRSTILI 822
+ +R ++F ++ + +FD+ S+ L SR+ D+ L T+V + ++I+
Sbjct: 98 MTMRRRLFGHMMGMPVSFFDK--QSTGTLLSRITYDSEQVASSSSGALITVVREGASII- 154
Query: 823 QNFGLVTASFVIAFILNWRITLVVVATYPLIISGHIS--EKLFFQGYGGNLSKAYLKANM 880
GL F++ F +W+++L+++ P I+S I K F N+SK NM
Sbjct: 155 ---GL----FIMMFYYSWQLSLILIVIAP-IVSIAIRVVSKRF-----RNISK-----NM 196
Query: 881 LAAEAVSNIRTVA-AFCSEDKVLELYSRELVEPSKR-----SFIRGQ------IAGIFYG 928
+ + T A K + ++ + VE +KR + +R Q + I
Sbjct: 197 --QNTMGQVTTSAEQMLKGHKEVLIFGGQEVE-TKRFDKVSNRMRQQGMKMVSASSISDP 253
Query: 929 ISQFFIFSSYGLALWYGSVLMGKELASFKSVMK-----SFMVLIVTALAMGETLALVPDL 983
I Q +S LA VL ASF SVM + V+ + +A+ L + ++
Sbjct: 254 IIQLI--ASLALAF----VLY---AASFPSVMDTLTAGTITVVFSSMIALMRPLKSLTNV 304
Query: 984 LKGNQ--MAA--SVFEVLDRKTQVIGDIGE-ELTNVEGTIELRGVHFSYPSRPEVVIFKD 1038
Q MAA ++F +LD + + D G+ + +G IE R V F+YP + EV ++
Sbjct: 305 NAQFQRGMAACQTLFAILDLEQEK--DEGKRVIERAKGDIEFRNVTFTYPGK-EVPALRN 361
Query: 1039 FNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGK 1076
N K+ AGK++ALVG+SGSGKST+ +L+ RFYD G+
Sbjct: 362 INFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGE 399
|
Length = 582 |
| >gnl|CDD|226620 COG4136, COG4136, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 79.1 bits (195), Expect = 2e-16
Identities = 49/168 (29%), Positives = 76/168 (45%), Gaps = 22/168 (13%)
Query: 395 PDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEP---LSGEILLDGNNIKGL 451
P + I G+IV L+G SG GKST++S + +GE+ L+ + L
Sbjct: 13 PGSCLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDML 72
Query: 452 DLKWLRQQIGLVNQEPALFAT-TIRENILYG-----KDDATMEEITRAAKLSEAMSFISN 505
++QIG++ Q+ LF ++ +N+L+ K +A A + S
Sbjct: 73 PAA--QRQIGILFQDALLFPHLSVGQNLLFALPATLKGNARRNAANAALERSGLDGAFHQ 130
Query: 506 LPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDA 553
P LSGGQ+ R+A+ RA++ P LLLDE S LD
Sbjct: 131 DPA-----------TLSGGQRARVALLRALLAQPKALLLDEPFSRLDV 167
|
Length = 213 |
| >gnl|CDD|183080 PRK11300, livG, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 80.0 bits (198), Expect = 2e-16
Identities = 71/233 (30%), Positives = 112/233 (48%), Gaps = 41/233 (17%)
Query: 405 LDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQI---G 461
L++ +IV+L+G +G+GK+TV + + FY+P G ILL G +I+GL QI G
Sbjct: 26 LEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLP----GHQIARMG 81
Query: 462 LVN--QEPALFAT-TIRENILYGKD------------------DATMEEITRAAKLSEAM 500
+V Q LF T+ EN+L + A E + RAA E +
Sbjct: 82 VVRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERV 141
Query: 501 SFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQ 560
L E Q G L+ GQ++R+ I+R +V P IL+LDE + L+ + +
Sbjct: 142 ----GLLEHANRQAG----NLAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELD 193
Query: 561 EALD--RVMVGRTTVVVAHRLSTIRN-ADVIAVV-QGRKIVKTGSHEELISNP 609
E + R T +++ H + + +D I VV QG + G+ EE+ +NP
Sbjct: 194 ELIAELRNEHNVTVLLIEHDMKLVMGISDRIYVVNQGTPLA-NGTPEEIRNNP 245
|
Length = 255 |
| >gnl|CDD|236689 PRK10419, nikE, nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Score = 80.1 bits (198), Expect = 2e-16
Identities = 68/245 (27%), Positives = 114/245 (46%), Gaps = 29/245 (11%)
Query: 394 RPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLD- 452
+ + L + +G+ VAL+G SG GKST+ L+ P G + G + L+
Sbjct: 22 HQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNR 81
Query: 453 --LKWLRQQIGLVNQEPALFAT----TIRENI------LYGKDDATMEEITRAAKLSEAM 500
K R+ I +V Q+ ++ A T+RE I L D A E + RA+++ A+
Sbjct: 82 AQRKAFRRDIQMVFQD-SISAVNPRKTVREIIREPLRHLLSLDKA--ERLARASEMLRAV 138
Query: 501 SFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQ 560
++ ++ R QLSGGQ QR+ ++RA+ P +L+LDEA S LD + V
Sbjct: 139 DLDDSVLDK-------RPPQLSGGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVI 191
Query: 561 EALDRVM--VGRTTVVVAHRLSTI-RNADVIAVVQGRKIVKTGSHEELISNPNSAYAALV 617
L ++ G + + H L + R + V+ +IV+T + ++ + A
Sbjct: 192 RLLKKLQQQFGTACLFITHDLRLVERFCQRVMVMDNGQIVETQPVGDKLT---FSSPAGR 248
Query: 618 QLQEA 622
LQ A
Sbjct: 249 VLQNA 253
|
Length = 268 |
| >gnl|CDD|213201 cd03234, ABCG_White, White pigment protein homolog of ABCG transporter subfamily | Back alignment and domain information |
|---|
Score = 78.9 bits (195), Expect = 3e-16
Identities = 47/201 (23%), Positives = 99/201 (49%), Gaps = 11/201 (5%)
Query: 381 HIEFKDVSFCYPS-RPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEP--- 436
+ + DV + I + L + +G+++A++G SGSGK+T++ I E
Sbjct: 3 VLPWWDVGLKAKNWNKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGT 62
Query: 437 LSGEILLDGNNIKGLDLKWLRQQIGLVNQEPALFAT-TIRENILYGKDDATMEEITRAAK 495
SG+IL +G + ++ + V Q+ L T+RE + Y + + A +
Sbjct: 63 TSGQILFNG---QPRKPDQFQKCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIR 119
Query: 496 LSEAMSFISNLPERFETQVGERGIQ-LSGGQKQRIAISRAIVKNPSILLLDEATSALDAE 554
+ L + T++G ++ +SGG+++R++I+ ++ +P +L+LDE TS LD+
Sbjct: 120 --KKRVEDVLLRDLALTRIGGNLVKGISGGERRRVSIAVQLLWDPKVLILDEPTSGLDSF 177
Query: 555 SENSVQEALDRVMVGRTTVVV 575
+ ++ L ++ V++
Sbjct: 178 TALNLVSTLSQLARRNRIVIL 198
|
The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners. Length = 226 |
| >gnl|CDD|226968 COG4615, PvdE, ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 82.9 bits (205), Expect = 3e-16
Identities = 93/441 (21%), Positives = 177/441 (40%), Gaps = 61/441 (13%)
Query: 127 YTGERQAAKMRMAYLRSMLNQDISLFDTEASTGEVISAITSDIIVVQDALSEKVGNFMHY 186
G+ K+R +++ +L+ + + + +++ +TSD+ + A S
Sbjct: 74 TLGQHFIYKLRSEFIKKILDTPLERIE-RLGSARLLAGLTSDVRNISFAFS--------R 124
Query: 187 ISRFLGGFIIGF---ARVWQIS----LVTLSIVPLIALAGGMYAYVTIGLIARVRKSYVK 239
+ + I+ A + +S L+T+ + + G + L+ARV K
Sbjct: 125 LPELVQAIILTLGSAAYLAYLSPKMFLLTVVWIVVTIWGGFV-------LMARVYKHMAA 177
Query: 240 AGEIAEEVIGNVRTVQAFAGE-----DKAVKVYKEALSNTYKYGRKAGLAKGLGLGSMHC 294
A E +++ + +T+ E ++A V+ + R + +
Sbjct: 178 ARETEDKLQNDYQTILEGRKELTLNRERAEYVHNNLYIPDAQEYRHH-----IIRANTFH 232
Query: 295 VLFLSWSLLVWYVSVVVHKHISNGGESFTTMLNVVIAGL------SLGQAAPDITAFIRA 348
+L ++WS ++ + + ++ +T + I + L A + + A
Sbjct: 233 LLAVNWSNIMLLGLIGLVFWLALSLGWASTNVAATIVLVLLFLRTPLLSAVGILPTLLTA 292
Query: 349 KAAAYPIFEMIERDTMSKASSKTGRKLDKLSGHIEFKDVSFCYPSRPDVAI-FDKFCLDI 407
+ A I ++ KA + +E ++V F Y D A L I
Sbjct: 293 QVAFNKIAKLELAP--YKADFPRPQAFPDWKT-LELRNVRFAYQ---DNAFHVGPINLTI 346
Query: 408 PAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIGLVNQEP 467
G++V L+GG+GSGKST+ L+ Y+P SGEILLDG + L+ R+ V +
Sbjct: 347 KRGELVFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVSAEQLEDYRKLFSAVFSDY 406
Query: 468 ALFATTI--RENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQ 525
LF + + ++ + A K S SNL +LS GQ
Sbjct: 407 HLFDQLLGPEGKASPQLIEKWLQRLELAHKTSLNDGRFSNL-------------KLSTGQ 453
Query: 526 KQRIAISRAIVKNPSILLLDE 546
K+R+A+ A+++ IL+LDE
Sbjct: 454 KKRLALLLALLEERDILVLDE 474
|
Length = 546 |
| >gnl|CDD|236688 PRK10418, nikD, nickel transporter ATP-binding protein NikD; Provisional | Back alignment and domain information |
|---|
Score = 79.4 bits (196), Expect = 3e-16
Identities = 67/242 (27%), Positives = 111/242 (45%), Gaps = 31/242 (12%)
Query: 395 PDVAIFDKFCLDIPAGKIVALVGGSGSGKS----TVISLIERFYEPLSGEILLDGNNIKG 450
+ L + G+++ALVGGSGSGKS + ++ +G +LLDG +
Sbjct: 14 AAQPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAP 73
Query: 451 LDLKWLRQQIGLVNQEP-ALF------ATTIRENIL-YGK--DDATMEEITRAAKLSEAM 500
L+ ++I + Q P + F T RE L GK DDAT+ A L A
Sbjct: 74 CALR--GRKIATIMQNPRSAFNPLHTMHTHARETCLALGKPADDATLTAALEAVGLENAA 131
Query: 501 SFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQ 560
+ P ++SGG QR+ I+ A++ ++ DE T+ LD ++ +
Sbjct: 132 RVLKLYP-----------FEMSGGMLQRMMIALALLCEAPFIIADEPTTDLDVVAQARIL 180
Query: 561 EALDRVMVGRT--TVVVAHRLSTI-RNADVIAVVQGRKIVKTGSHEELISNPNSAYA-AL 616
+ L+ ++ R ++V H + + R AD +AV+ +IV+ G E L + P A +L
Sbjct: 181 DLLESIVQKRALGMLLVTHDMGVVARLADDVAVMSHGRIVEQGDVETLFNAPKHAVTRSL 240
Query: 617 VQ 618
V
Sbjct: 241 VS 242
|
Length = 254 |
| >gnl|CDD|184198 PRK13638, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 78.9 bits (194), Expect = 6e-16
Identities = 67/232 (28%), Positives = 109/232 (46%), Gaps = 22/232 (9%)
Query: 386 DVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDG 445
D+ F Y P + LD + LVG +G GKST+ + P G +L G
Sbjct: 6 DLWFRYQDEP---VLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQG 62
Query: 446 NNIKGLD-----LKWLRQQIGLVNQEP--ALFATTIRENILYGKDDATMEEITRAAKLSE 498
K LD L LRQQ+ V Q+P +F T I +I + + + E ++ E
Sbjct: 63 ---KPLDYSKRGLLALRQQVATVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITRRVDE 119
Query: 499 AMSFISNLPERFETQVGERGIQ-LSGGQKQRIAISRAIVKNPSILLLDEATSALDAESEN 557
A++ + + F Q IQ LS GQK+R+AI+ A+V LLLDE T+ LD
Sbjct: 120 ALTLVD--AQHFRHQ----PIQCLSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRT 173
Query: 558 SVQEALDRVMV-GRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELIS 607
+ + R++ G ++ +H + I +D + V++ +I+ G+ E+ +
Sbjct: 174 QMIAIIRRIVAQGNHVIISSHDIDLIYEISDAVYVLRQGQILTHGAPGEVFA 225
|
Length = 271 |
| >gnl|CDD|184210 PRK13651, PRK13651, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 79.0 bits (195), Expect = 9e-16
Identities = 67/261 (25%), Positives = 120/261 (45%), Gaps = 42/261 (16%)
Query: 382 IEFKDVSFCYPSRPDVAI--FDKFCLDIPAGKIVALVGGSGSGKSTVIS----------- 428
I+ K++ + + + D ++I G+ +A++G +GSGK+T I
Sbjct: 3 IKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTG 62
Query: 429 LIERFYE-------PLSGEILLDGNNIKGL------DLKWLRQQIGLVNQ--EPALFATT 473
IE ++ E +L+ I+ +K +R+++G+V Q E LF T
Sbjct: 63 TIEWIFKDEKNKKKTKEKEKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQT 122
Query: 474 IRENILYGKDDATM---EEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIA 530
I ++I++G + E RAAK E + L E + + +LSGGQK+R+A
Sbjct: 123 IEKDIIFGPVSMGVSKEEAKKRAAKYIE----LVGLDESY---LQRSPFELSGGQKRRVA 175
Query: 531 ISRAIVKNPSILLLDEATSALDAESENSVQEALDRV-MVGRTTVVVAHRLSTI--RNADV 587
++ + P L+ DE T+ LD + + E D + G+T ++V H L +
Sbjct: 176 LAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLDNVLEWTKRT 235
Query: 588 IAVVQGRKIVKTGSHEELISN 608
I G KI+K G +++S+
Sbjct: 236 IFFKDG-KIIKDGDTYDILSD 255
|
Length = 305 |
| >gnl|CDD|213215 cd03248, ABCC_TAP, ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C | Back alignment and domain information |
|---|
Score = 76.4 bits (188), Expect = 2e-15
Identities = 26/65 (40%), Positives = 45/65 (69%)
Query: 1012 TNVEGTIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYD 1071
+++G ++ + V F+YP+RP+ ++ +D + + G+ ALVG SGSGKSTV++L+ FY
Sbjct: 6 DHLKGIVKFQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQ 65
Query: 1072 PTAGK 1076
P G+
Sbjct: 66 PQGGQ 70
|
TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. Length = 226 |
| >gnl|CDD|226646 COG4178, COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 80.8 bits (200), Expect = 2e-15
Identities = 51/203 (25%), Positives = 92/203 (45%), Gaps = 28/203 (13%)
Query: 382 IEFKDVSFCYPSRPDVAIF-DKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGE 440
I +++S PD + ++ G+ + + G SG+GK++++ + + SG
Sbjct: 393 ITLENLSLR---TPDGQTLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWGSGR 449
Query: 441 ILLDGNNIKGLDLKWLRQQIGLVNQEPALFATTIRENILY-----GKDDATMEEITRAAK 495
I + ++ + + Q P L T+RE + Y DA + +
Sbjct: 450 ISMPADS-----------ALLFLPQRPYLPQGTLREALCYPNAAPDFSDAELVAVLHKVG 498
Query: 496 LSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAES 555
L + L ER + + LSGG++QR+A +R ++ P + LDEATSALD E+
Sbjct: 499 LGD-------LAERLD-EEDRWDRVLSGGEQQRLAFARLLLHKPKWVFLDEATSALDEET 550
Query: 556 ENSVQEALDRVMVGRTTVVVAHR 578
E+ + + L + T + V HR
Sbjct: 551 EDRLYQLLKEELPDATVISVGHR 573
|
Length = 604 |
| >gnl|CDD|237421 PRK13539, PRK13539, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 76.1 bits (188), Expect = 2e-15
Identities = 56/182 (30%), Positives = 91/182 (50%), Gaps = 26/182 (14%)
Query: 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGE 440
+E +D++ C R +F + AG+ + L G +GSGK+T++ LI P +G
Sbjct: 2 MLEGEDLA-CV--RGGRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGT 58
Query: 441 ILLDGNNIKGLDLKWLRQQIGLVNQ-EPALFATTIRENI-----LYGKDDATMEEITRAA 494
I LDG +I D+ +G N +PAL T+ EN+ G ++ + A
Sbjct: 59 IKLDGGDIDDPDVAEACHYLGHRNAMKPAL---TVAENLEFWAAFLGGEELDIAAALEAV 115
Query: 495 KLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAE 554
L+ +++LP + LS GQK+R+A++R +V N I +LDE T+ALDA
Sbjct: 116 GLAP----LAHLPFGY----------LSAGQKRRVALARLLVSNRPIWILDEPTAALDAA 161
Query: 555 SE 556
+
Sbjct: 162 AV 163
|
Length = 207 |
| >gnl|CDD|233207 TIGR00955, 3a01204, The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Score = 80.5 bits (199), Expect = 2e-15
Identities = 55/212 (25%), Positives = 105/212 (49%), Gaps = 20/212 (9%)
Query: 410 GKIVALVGGSGSGKSTVISLIERFYEP----LSGEILLDGNNIKGLDLKWLRQQIGLVNQ 465
G+++A++G SG+GK+T+++ + F P SG +LL+G +D K +R V Q
Sbjct: 51 GELLAVMGSSGAGKTTLMNALA-FRSPKGVKGSGSVLLNG---MPIDAKEMRAISAYVQQ 106
Query: 466 EPALFAT-TIRENILY------GKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERG 518
+ T T+RE++++ + E+ R ++ +A+ R V R
Sbjct: 107 DDLFIPTLTVREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTR--IGVPGRV 164
Query: 519 IQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRV-MVGRTTVVVAH 577
LSGG+++R+A + ++ +P +L DE TS LD+ SV + L + G+T + H
Sbjct: 165 KGLSGGERKRLAFASELLTDPPLLFCDEPTSGLDSFMAYSVVQVLKGLAQKGKTIICTIH 224
Query: 578 RLST--IRNADVIAVVQGRKIVKTGSHEELIS 607
+ S+ D I ++ ++ GS ++ +
Sbjct: 225 QPSSELFELFDKIILMAEGRVAYLGSPDQAVP 256
|
[Transport and binding proteins, Other]. Length = 617 |
| >gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Score = 79.7 bits (197), Expect = 3e-15
Identities = 73/246 (29%), Positives = 115/246 (46%), Gaps = 52/246 (21%)
Query: 401 DKFCLDIPAGKIVALVGGSGSGKS-TVISLIERFYEP----LSGEILLDGNNIKGLDLKW 455
+ L I AG+ +ALVG SGSGKS T +S++ P SG+I G ++ +
Sbjct: 26 NDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHASEQT 85
Query: 456 LRQ----QIGLVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMSF---ISNLPE 508
LR +I ++ QEP + N L+ T+E+ +L E +S +
Sbjct: 86 LRGVRGNKIAMIFQEP-----MVSLNPLH-----TLEK-----QLYEVLSLHRGMRREAA 130
Query: 509 RFET-----QVGERGI---------QLSGGQKQRIAISRAIVKNPSILLLDEATSALDAE 554
R E +VG R QLSGG++QR+ I+ A++ P +L+ DE T+ALD
Sbjct: 131 RGEILNCLDRVGIRQAAKRLTDYPHQLSGGERQRVMIAMALLTRPELLIADEPTTALDV- 189
Query: 555 SENSVQEALDRVM------VGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELIS 607
SVQ + +++ + + + H LS +R AD +AV+Q + V+ L S
Sbjct: 190 ---SVQAQILQLLRELQQELNMGLLFITHNLSIVRKLADRVAVMQNGRCVEQNRAATLFS 246
Query: 608 NPNSAY 613
P Y
Sbjct: 247 APTHPY 252
|
Length = 529 |
| >gnl|CDD|226622 COG4138, BtuD, ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 75.7 bits (186), Expect = 5e-15
Identities = 59/227 (25%), Positives = 112/227 (49%), Gaps = 31/227 (13%)
Query: 403 FCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWL-RQQIG 461
++ AG+I+ LVG +G+GKST+++ + SG I G ++ L R +
Sbjct: 18 LSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGSGSIQFAGQPLEAWSATELARHRAY 76
Query: 462 LVNQEPALFATTIRENI-LYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQ 520
L Q+ FA + + L+ D E + + ++ + ++G Q
Sbjct: 77 LSQQQTPPFAMPVWHYLTLHQPDKTRTELL----------NDVAGA-LALDDKLGRSTNQ 125
Query: 521 LSGGQKQRIAISRAIVK-----NPS--ILLLDEATSALDAESENSVQEALDRVMV----- 568
LSGG+ QR+ ++ +++ NP+ +LLLDE ++LD ++ ALDR++
Sbjct: 126 LSGGEWQRVRLAAVVLQITPDANPAGQLLLLDEPMNSLDVAQQS----ALDRLLSALCQQ 181
Query: 569 GRTTVVVAHRLS-TIRNADVIAVVQGRKIVKTGSHEELISNPNSAYA 614
G V+ +H L+ T+R+A +++ K++ +G EE+++ P A A
Sbjct: 182 GLAIVMSSHDLNHTLRHAHRAWLLKRGKLLASGRREEVLTPPVLAQA 228
|
Length = 248 |
| >gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Score = 78.6 bits (194), Expect = 6e-15
Identities = 69/230 (30%), Positives = 111/230 (48%), Gaps = 44/230 (19%)
Query: 409 AGKIVALVGGSGSGKST----VISLIERFYEPLSGEILLDGNNIKGLDLKWL---RQQIG 461
G+ + LVG SGSGKST ++ LI GEI DG + L+ + L R +I
Sbjct: 311 PGETLGLVGESGSGKSTTGLALLRLI-----NSQGEIWFDGQPLHNLNRRQLLPVRHRIQ 365
Query: 462 LVNQEP--AL-----FATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPE---RFE 511
+V Q+P +L I E + + + + R ++ M + PE R+
Sbjct: 366 VVFQDPNSSLNPRLNVLQIIEEGLRVHQPTLSAAQ--REQQVIAVMEEVGLDPETRHRYP 423
Query: 512 TQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQE---ALDRVMV 568
+ SGGQ+QRIAI+RA++ PS+++LDE TS+LD +VQ AL + +
Sbjct: 424 AE-------FSGGQRQRIAIARALILKPSLIILDEPTSSLD----KTVQAQILALLKSLQ 472
Query: 569 GR---TTVVVAHRLSTIRNA--DVIAVVQGRKIVKTGSHEELISNPNSAY 613
+ + ++H L +R VI + QG ++V+ G E + + P Y
Sbjct: 473 QKHQLAYLFISHDLHVVRALCHQVIVLRQG-EVVEQGDCERVFAAPQQEY 521
|
Length = 529 |
| >gnl|CDD|213184 cd03217, ABC_FeS_Assembly, ABC-type transport system involved in Fe-S cluster assembly, ATPase component | Back alignment and domain information |
|---|
Score = 74.1 bits (183), Expect = 6e-15
Identities = 60/214 (28%), Positives = 93/214 (43%), Gaps = 41/214 (19%)
Query: 396 DVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERF--YEPLSGEILLDGNNIKGLDL 453
I L I G++ AL+G +GSGKST+ I YE GEIL G +I L
Sbjct: 12 GKEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPP 71
Query: 454 -KWLRQQIGLVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFET 512
+ R I L Q P EI K ++ F+ + E F
Sbjct: 72 EERARLGIFLAFQYPP--------------------EIP-GVKNAD---FLRYVNEGF-- 105
Query: 513 QVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVM-VGRT 571
SGG+K+R I + ++ P + +LDE S LD ++ V E ++++ G++
Sbjct: 106 ---------SGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREEGKS 156
Query: 572 TVVVAH--RLSTIRNADVIAVVQGRKIVKTGSHE 603
+++ H RL D + V+ +IVK+G E
Sbjct: 157 VLIITHYQRLLDYIKPDRVHVLYDGRIVKSGDKE 190
|
Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. Length = 200 |
| >gnl|CDD|213190 cd03223, ABCD_peroxisomal_ALDP, ATP-binding cassette domain of peroxisomal transporter, subfamily D | Back alignment and domain information |
|---|
Score = 73.0 bits (180), Expect = 8e-15
Identities = 53/198 (26%), Positives = 83/198 (41%), Gaps = 52/198 (26%)
Query: 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEI 441
IE +++S P V + D +I G + + G SG+GKS++ + + SG I
Sbjct: 1 IELENLSLATPDG-RVLLKDLS-FEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRI 58
Query: 442 LLDGNNIKGLDLKWLRQQIGLVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMS 501
+ + + Q P L T+RE ++Y DD
Sbjct: 59 GMPEGE-----------DLLFLPQRPYLPLGTLREQLIYPWDDV---------------- 91
Query: 502 FISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQE 561
LSGG++QR+A +R ++ P + LDEATSALD ESE+ + +
Sbjct: 92 -------------------LSGGEQQRLAFARLLLHKPKFVFLDEATSALDEESEDRLYQ 132
Query: 562 ALDRVMVGRTTVV-VAHR 578
L + TV+ V HR
Sbjct: 133 LLKELG---ITVISVGHR 147
|
Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asymptomatic). Length = 166 |
| >gnl|CDD|182336 PRK10253, PRK10253, iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 75.4 bits (185), Expect = 9e-15
Identities = 63/218 (28%), Positives = 102/218 (46%), Gaps = 27/218 (12%)
Query: 405 LDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIGLVN 464
++IP G A++G +G GKST++ + R P G + LDG +I+ K + ++IGL+
Sbjct: 28 VEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVARRIGLLA 87
Query: 465 QEPALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFE--------TQVGE 516
Q ATT D T++E+ + F E E T +
Sbjct: 88 QN----ATT--------PGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITH 135
Query: 517 RGIQ----LSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRV--MVGR 570
Q LSGGQ+QR I+ + + +I+LLDE T+ LD + + E L + G
Sbjct: 136 LADQSVDTLSGGQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGY 195
Query: 571 TTVVVAHRLS-TIRNADVIAVVQGRKIVKTGSHEELIS 607
T V H L+ R A + ++ KIV G+ +E+++
Sbjct: 196 TLAAVLHDLNQACRYASHLIALREGKIVAQGAPKEIVT 233
|
Length = 265 |
| >gnl|CDD|213221 cd03254, ABCC_Glucan_exporter_like, ATP-binding cassette domain of glucan transporter and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 73.4 bits (181), Expect = 2e-14
Identities = 25/61 (40%), Positives = 43/61 (70%), Gaps = 2/61 (3%)
Query: 1016 GTIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAG 1075
G IE V+FSY + + KD N ++ G+++A+VG +G+GK+T+++L++RFYDP G
Sbjct: 1 GEIEFENVNFSY--DEKKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKG 58
Query: 1076 K 1076
+
Sbjct: 59 Q 59
|
Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 229 |
| >gnl|CDD|163508 TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Score = 78.1 bits (193), Expect = 2e-14
Identities = 69/325 (21%), Positives = 137/325 (42%), Gaps = 31/325 (9%)
Query: 768 RLTLRVREKMFSAILSNEIGWFDEMDNSSSILASRLESDATLLRTIVVDRSTILIQNFGL 827
+L + + + IL + +F + + +ASR++ + + + +T + L
Sbjct: 224 KLAVGMSARFLWHILRLPVRFFAQ--RHAGDIASRVQLNDQVAEFLSGQLATTALDAVML 281
Query: 828 VTASFVIAFILNWRITLVVVAT------YPLIISGHISEKLFFQGYGGNLSKAYLKANML 881
V ++ + + +TL+ +A ++S + L + K +
Sbjct: 282 VF-YALLMLLYDPVLTLIGIAFAAINVLALQLVSRRRVDA------NRRLQQDAGKLTGV 334
Query: 882 AAEAVSNIRTVAAFCSED----KVLELYSRELVEPSKRSFIRGQIAGIFYGISQFFIFSS 937
A + +I T+ A E + ++ L+ + + QI G+ +
Sbjct: 335 AISGLQSIETLKASGLESDFFSRWAGYQAK-LLNAQQELGVLTQILGVL---PTLLTSLN 390
Query: 938 YGLALWYGSVL-MGKE-----LASFKSVMKSFMVLIVTALAMGETLA-LVPDLLKGNQMA 990
L L G + M + L +F+S+M SF+ + + G TL L DL + + +
Sbjct: 391 SALILVVGGLRVMEGQLTIGMLVAFQSLMSSFLEPVNNLVGFGGTLQELEGDLNRLDDVL 450
Query: 991 ASVFEVLDRKTQVIGDIGEELTNVEGTIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMA 1050
+ + L + + E + G +ELR + F Y S E + ++F+L ++ G+ +A
Sbjct: 451 RNPVDPLLEEEEAPAAGSEPSPRLSGYVELRNITFGY-SPLEPPLIENFSLTLQPGQRVA 509
Query: 1051 LVGQSGSGKSTVLSLILRFYDPTAG 1075
LVG SGSGKST+ L+ Y P +G
Sbjct: 510 LVGGSGSGKSTIAKLVAGLYQPWSG 534
|
This protein describes a multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHLM, Nitrile Hydratase Leader Microcin [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 710 |
| >gnl|CDD|234033 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Score = 76.9 bits (190), Expect = 2e-14
Identities = 31/86 (36%), Positives = 47/86 (54%), Gaps = 2/86 (2%)
Query: 990 AASVFEVLDRKTQVIGDIGEELTNVEGTIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSM 1049
A ++F VLD + + ++E GV +YP R + + + V G+ +
Sbjct: 294 AEALFAVLDAAPRPLAGKAPVTAAPAPSLEFSGVSVAYPGRRPAL--RPVSFTVPPGERV 351
Query: 1050 ALVGQSGSGKSTVLSLILRFYDPTAG 1075
ALVG SG+GKST+L+L+L F DPT G
Sbjct: 352 ALVGPSGAGKSTLLNLLLGFVDPTEG 377
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD. Length = 529 |
| >gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 77.6 bits (191), Expect = 2e-14
Identities = 72/236 (30%), Positives = 114/236 (48%), Gaps = 30/236 (12%)
Query: 396 DVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLD--- 452
+V +K D+ G+ ++LVG SGSGKST + R E GEI+ +G I L
Sbjct: 336 EVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTLSPGK 395
Query: 453 LKWLRQQIGLVNQEPALFAT-TIRENILYGKDDATMEEITRAAKL---SEAMSFISNLPE 508
L+ LR+ I + Q+P +A+ R+ + + ME + R L A + ++ L E
Sbjct: 396 LQALRRDIQFIFQDP--YASLDPRQTVGD----SIMEPL-RVHGLLPGKAAAARVAWLLE 448
Query: 509 RFETQVGERGI-------QLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQE 561
R VG + SGGQ+QRI I+RA+ NP +++ DEA SALD +
Sbjct: 449 R----VGLLPEHAWRYPHEFSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIIN 504
Query: 562 A---LDRVMVGRTTVVVAHRLSTI-RNADVIAVVQGRKIVKTGSHEELISNPNSAY 613
L R G + ++H ++ + R + +AV+ +IV+ G + NP Y
Sbjct: 505 LLLDLQRDF-GIAYLFISHDMAVVERISHRVAVMYLGQIVEIGPRRAVFENPQHPY 559
|
Length = 623 |
| >gnl|CDD|185067 PRK15112, PRK15112, antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Score = 74.4 bits (183), Expect = 2e-14
Identities = 55/213 (25%), Positives = 113/213 (53%), Gaps = 21/213 (9%)
Query: 409 AGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIGLVNQEPA 468
G+ +A++G +GSGKST+ ++ EP SGE+L+D + + D + Q+I ++ Q+P+
Sbjct: 38 EGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDYSYRSQRIRMIFQDPS 97
Query: 469 LFATTIRENILYGKD-----DATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSG 523
+ R+ I D + +E R ++ E + + LP+ L+
Sbjct: 98 T-SLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPD----HASYYPHMLAP 152
Query: 524 GQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMV------GRTTVVVAH 577
GQKQR+ ++RA++ P +++ DEA ++LD S++ L +M+ G + + V
Sbjct: 153 GQKQRLGLARALILRPKVIIADEALASLDM----SMRSQLINLMLELQEKQGISYIYVTQ 208
Query: 578 RLSTIRN-ADVIAVVQGRKIVKTGSHEELISNP 609
L +++ +D + V+ ++V+ GS +++++P
Sbjct: 209 HLGMMKHISDQVLVMHQGEVVERGSTADVLASP 241
|
Length = 267 |
| >gnl|CDD|183280 PRK11701, phnK, phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Score = 74.2 bits (183), Expect = 2e-14
Identities = 77/281 (27%), Positives = 122/281 (43%), Gaps = 77/281 (27%)
Query: 373 RKLDKLSGH-IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIE 431
R L KL G +DVSF D+ G+++ +VG SGSGK+T+++ +
Sbjct: 10 RGLTKLYGPRKGCRDVSF----------------DLYPGEVLGIVGESGSGKTTLLNALS 53
Query: 432 RFYEPLSGEILLDGNNIKGLDL---------KWLRQQIGLVNQEPA-------------- 468
P +GE+ + + DL + LR + G V+Q P
Sbjct: 54 ARLAPDAGEVHYRMRDGQLRDLYALSEAERRRLLRTEWGFVHQHPRDGLRMQVSAGGNIG 113
Query: 469 --LFATTIRENILYGKDDAT----MEEITRAAKLSEAMSFISNLPERFETQVGERGIQLS 522
L A R YG AT +E + A + I +LP F S
Sbjct: 114 ERLMAVGARH---YGDIRATAGDWLERVEIDA------ARIDDLPTTF-----------S 153
Query: 523 GGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQ-EALD--RVMV---GRTTVVVA 576
GG +QR+ I+R +V +P ++ +DE T LD SVQ LD R +V G V+V
Sbjct: 154 GGMQQRLQIARNLVTHPRLVFMDEPTGGLDV----SVQARLLDLLRGLVRELGLAVVIVT 209
Query: 577 HRLSTIRN-ADVIAVVQGRKIVKTGSHEELISNPNSAYAAL 616
H L+ R A + V++ ++V++G ++++ +P Y L
Sbjct: 210 HDLAVARLLAHRLLVMKQGRVVESGLTDQVLDDPQHPYTQL 250
|
Length = 258 |
| >gnl|CDD|131377 TIGR02324, CP_lyasePhnL, phosphonate C-P lyase system protein PhnL | Back alignment and domain information |
|---|
Score = 73.2 bits (180), Expect = 2e-14
Identities = 58/192 (30%), Positives = 87/192 (45%), Gaps = 39/192 (20%)
Query: 405 LDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWL-------- 456
L + AG+ VAL G SG+GKST++ + Y P SG IL+ +DL
Sbjct: 29 LTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEG-AWVDLAQASPREVLEV 87
Query: 457 -RQQIGLVNQEPALFATTI-RENILYGKDDATMEE-----ITRAAKLSEAMSFIS--NLP 507
R+ IG V+Q F I R + L + E + R A + A ++ N+P
Sbjct: 88 RRKTIGYVSQ----FLRVIPRVSAL----EVVAEPLLERGVPREAARARARELLARLNIP 139
Query: 508 ERF-----ETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEA 562
ER T SGG++QR+ I+R + + ILLLDE T++LDA + V E
Sbjct: 140 ERLWHLPPAT--------FSGGEQQRVNIARGFIADYPILLLDEPTASLDAANRQVVVEL 191
Query: 563 LDRVMVGRTTVV 574
+ ++
Sbjct: 192 IAEAKARGAALI 203
|
Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. Length = 224 |
| >gnl|CDD|233305 TIGR01189, ccmA, heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Score = 72.8 bits (179), Expect = 2e-14
Identities = 42/169 (24%), Positives = 78/169 (46%), Gaps = 21/169 (12%)
Query: 393 SRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLD 452
SR + +F+ + AG+ + + G +G GK+T++ ++ P SGE+ +G +
Sbjct: 9 SRGERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQR 68
Query: 453 LKWLRQQIGLVNQEPALFAT-TIRENI-----LYGKDDATMEEITRAAKLSEAMSFISNL 506
+ + I + P L + EN+ ++G T+E+ A L+ +L
Sbjct: 69 DEP-HRNILYLGHLPGLKPELSALENLHFWAAIHGGAQRTIEDALAAVGLTG----FEDL 123
Query: 507 PERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAES 555
P QLS GQ++R+A++R + + +LDE T+ALD
Sbjct: 124 PAA----------QLSAGQQRRLALARLWLSRAPLWILDEPTTALDKAG 162
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other]. Length = 198 |
| >gnl|CDD|235150 PRK03695, PRK03695, vitamin B12-transporter ATPase; Provisional | Back alignment and domain information |
|---|
Score = 73.8 bits (182), Expect = 2e-14
Identities = 62/241 (25%), Positives = 118/241 (48%), Gaps = 29/241 (12%)
Query: 403 FCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWL-RQQIG 461
++ AG+I+ LVG +G+GKST+++ + P SG I G ++ L R +
Sbjct: 15 LSAEVRAGEILHLVGPNGAGKSTLLARMAGLL-PGSGSIQFAGQPLEAWSAAELARHRAY 73
Query: 462 LVNQEPALFATTIRENI-LYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQ 520
L Q+ FA + + + L+ D E + A L+E + L ++ V Q
Sbjct: 74 LSQQQTPPFAMPVFQYLTLHQPDKTRTEAVASA--LNEVAEAL-GLDDKLGRSVN----Q 126
Query: 521 LSGGQKQRIAISRAIVK-----NPS--ILLLDEATSALDAESENSVQEALDRVMV----- 568
LSGG+ QR+ ++ +++ NP+ +LLLDE ++LD + ALDR++
Sbjct: 127 LSGGEWQRVRLAAVVLQVWPDINPAGQLLLLDEPMNSLDVAQQA----ALDRLLSELCQQ 182
Query: 569 GRTTVVVAHRLS-TIRNADVIAVVQGRKIVKTGSHEELISNPN--SAYAALVQLQEAASQ 625
G V+ +H L+ T+R+AD + +++ K++ +G +E+++ N + + +
Sbjct: 183 GIAVVMSSHDLNHTLRHADRVWLLKQGKLLASGRRDEVLTPENLAQVFGVNFRRLDVEGH 242
Query: 626 Q 626
Sbjct: 243 P 243
|
Length = 248 |
| >gnl|CDD|226592 COG4107, PhnK, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 73.6 bits (181), Expect = 3e-14
Identities = 70/270 (25%), Positives = 114/270 (42%), Gaps = 68/270 (25%)
Query: 380 GHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSG 439
+DVSF D+ G+++ +VG SGSGK+T++ I P +G
Sbjct: 18 PGKGCRDVSF----------------DLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAG 61
Query: 440 EILLDGNNIKGLDL---------KWLRQQIGLVNQEPA----------------LFATTI 474
+ + + DL + LR + G V+Q P L A
Sbjct: 62 TVTYRMRDGQPRDLYTMSEAERRRLLRTEWGFVHQNPRDGLRMQVSAGGNIGERLMAIGA 121
Query: 475 RENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRA 534
R YG A ++ ++ I +LP F SGG +QR+ I+R
Sbjct: 122 RH---YGNIRAEAQDWLEEVEIDL--DRIDDLPRTF-----------SGGMQQRLQIARN 165
Query: 535 IVKNPSILLLDEATSALDAESENSVQ-EALD--RVMV---GRTTVVVAHRLSTIR-NADV 587
+V P ++ +DE T LD SVQ LD R +V G V+V H L+ R AD
Sbjct: 166 LVTRPRLVFMDEPTGGLDV----SVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLADR 221
Query: 588 IAVVQGRKIVKTGSHEELISNPNSAYAALV 617
+ V++ ++V++G + ++ +P+ Y L+
Sbjct: 222 LMVMKQGQVVESGLTDRVLDDPHHPYTQLL 251
|
Length = 258 |
| >gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 76.1 bits (188), Expect = 3e-14
Identities = 67/249 (26%), Positives = 116/249 (46%), Gaps = 35/249 (14%)
Query: 379 SGHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLS 438
S ++ F + +P V D D AG++ AL+G +G+GKST++ ++ Y+P +
Sbjct: 2 SPYLSFDGIGKTFPG---VKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDA 58
Query: 439 GEILLDGNNIKGLDLK-WLRQQIGLVNQE----PALFATTIRENILYGKDDATMEEITRA 493
G IL+DG ++ L + ++ QE P + T+ EN+ G+ + R
Sbjct: 59 GSILIDGQEMRFASTTAALAAGVAIIYQELHLVPEM---TVAENLYLGQLPHKGGIVNRR 115
Query: 494 AKLSEAMSFISNLPERF--ETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSAL 551
EA + +L +T + LS GQ+Q + I++A+ +N ++ DE TS+L
Sbjct: 116 LLNYEAREQLEHLGVDIDPDTPLKY----LSIGQRQMVEIAKALARNARVIAFDEPTSSL 171
Query: 552 DA-ESENSVQEALDRVMV-----GRTTVVVAHRLSTI-RNADVIAVVQ-GRKI-----VK 598
A E E L RV+ GR + V+HR+ I D I V + GR + +
Sbjct: 172 SAREIEQ-----LFRVIRELRAEGRVILYVSHRMEEIFALCDAITVFKDGRYVATFDDMA 226
Query: 599 TGSHEELIS 607
++L+
Sbjct: 227 QVDRDQLVQ 235
|
Length = 501 |
| >gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Score = 77.4 bits (190), Expect = 4e-14
Identities = 62/211 (29%), Positives = 109/211 (51%), Gaps = 26/211 (12%)
Query: 394 RPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDL 453
RP V D+ + +I A +G +G+GK+T +S++ P SG +L+ G +I+ +L
Sbjct: 943 RPAV---DRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIE-TNL 998
Query: 454 KWLRQQIGLVNQEPALFA-TTIRENILY-----GK--DDATMEEITRAAKLSEAMSFISN 505
+RQ +G+ Q LF T+ E+IL+ G+ ++A +E EAM +
Sbjct: 999 DAVRQSLGMCPQHNILFHHLTVAEHILFYAQLKGRSWEEAQLE--------MEAMLEDTG 1050
Query: 506 LPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDR 565
L + E LSGG +++++++ A V + +++LDE TS +D S S+ + L +
Sbjct: 1051 LHHK----RNEEAQDLSGGMQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLK 1106
Query: 566 VMVGRTTVVVAHRLSTIRN-ADVIAVV-QGR 594
GRT ++ H + D IA++ QGR
Sbjct: 1107 YRSGRTIIMSTHHMDEADLLGDRIAIISQGR 1137
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272 |
| >gnl|CDD|188208 TIGR02323, CP_lyasePhnK, phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Score = 72.9 bits (179), Expect = 5e-14
Identities = 64/266 (24%), Positives = 110/266 (41%), Gaps = 60/266 (22%)
Query: 380 GHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSG 439
G +DVSF D+ G+++ +VG SGSGKST++ + P G
Sbjct: 15 GGKGCRDVSF----------------DLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHG 58
Query: 440 EILLDGNNIKGLDL---------KWLRQQIGLVNQEPA----------------LFATTI 474
+ L+L + +R + G V+Q P L A
Sbjct: 59 TATYIMRSGAELELYQLSEAERRRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGA 118
Query: 475 RENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRA 534
R YG AT ++ ++ I +LP F SGG +QR+ I+R
Sbjct: 119 RH---YGNIRATAQDWLEEVEIDPTR--IDDLPRAF-----------SGGMQQRLQIARN 162
Query: 535 IVKNPSILLLDEATSALDAESENSVQEALDRVMV--GRTTVVVAHRLSTIR-NADVIAVV 591
+V P ++ +DE T LD + + + L ++ G ++V H L R A + V+
Sbjct: 163 LVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLGVARLLAQRLLVM 222
Query: 592 QGRKIVKTGSHEELISNPNSAYAALV 617
Q ++V++G ++++ +P Y L+
Sbjct: 223 QQGRVVESGLTDQVLDDPQHPYTQLL 248
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se [Central intermediary metabolism, Phosphorus compounds]. Length = 253 |
| >gnl|CDD|213198 cd03231, ABC_CcmA_heme_exporter, Cytochrome c biogenesis ATP-binding export protein | Back alignment and domain information |
|---|
Score = 71.4 bits (175), Expect = 7e-14
Identities = 44/177 (24%), Positives = 80/177 (45%), Gaps = 23/177 (12%)
Query: 393 SRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLD 452
R A+F + AG+ + + G +GSGK+T++ ++ PL+G +LL+G +
Sbjct: 9 ERDGRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQR 68
Query: 453 LKWLRQQIGLVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFET 512
R + L + ++ EN+ + D + E++ A
Sbjct: 69 DSIARGLLYLGHAPGIKTTLSVLENLRFWHADHSDEQVEEAL-----------------A 111
Query: 513 QVGERGI------QLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEAL 563
+VG G QLS GQ++R+A++R ++ + +LDE T+ALD EA+
Sbjct: 112 RVGLNGFEDRPVAQLSAGQQRRVALARLLLSGRPLWILDEPTTALDKAGVARFAEAM 168
|
CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperon that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. Length = 201 |
| >gnl|CDD|227320 COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 74.7 bits (184), Expect = 1e-13
Identities = 46/156 (29%), Positives = 76/156 (48%), Gaps = 7/156 (4%)
Query: 926 FYGISQFFIFSSYGLALWYGSVLMGKEL---ASFKSVMKSFMVLIVTALAMGETLA--LV 980
F G+S + GL + + M ++ A + +++I AL E LA
Sbjct: 241 FTGLSDAILLLIAGLLVIGLLLWMAAQVGAGALAQPGAALALLVIFAALEAFEPLAPGAF 300
Query: 981 PDLLKGNQMAASVFEVLDRKTQVIGDIGEELTNVEGTIELRGVHFSYPSRPEVVIFKDFN 1040
L + A + ++LD+K +V E+ +ELR V F+YP + K+FN
Sbjct: 301 QHLGQVIASARRLNDILDQKPEVTFP-DEQTATTGQALELRNVSFTYPGQQTKA-LKNFN 358
Query: 1041 LKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGK 1076
L + G+ +A++G+SGSGKST+L L+ +DP G
Sbjct: 359 LTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGS 394
|
Length = 573 |
| >gnl|CDD|182182 PRK09984, PRK09984, phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 72.0 bits (176), Expect = 1e-13
Identities = 68/225 (30%), Positives = 108/225 (48%), Gaps = 36/225 (16%)
Query: 405 LDIPAGKIVALVGGSGSGKSTVI----SLIERFYEPLSGEILLDGNNIK-----GLDLKW 455
L+I G++VAL+G SGSGKST++ LI S I L G ++ D++
Sbjct: 25 LNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGS-HIELLGRTVQREGRLARDIRK 83
Query: 456 LRQQIGLVNQEPALF-ATTIRENILYGKDDAT------MEEITRAAKLSEAMSFISNLPE 508
R G + Q+ L ++ EN+L G +T TR K A+ +
Sbjct: 84 SRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQK-QRALQAL----- 137
Query: 509 RFETQVG------ERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEA 562
T+VG +R LSGGQ+QR+AI+RA+++ ++L DE ++LD ES V +
Sbjct: 138 ---TRVGMVHFAHQRVSTLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDT 194
Query: 563 LDRVMV--GRTTVVVAHRLS-TIRNAD-VIAVVQGRKIVKTGSHE 603
L + G T VV H++ +R + ++A+ QG S +
Sbjct: 195 LRDINQNDGITVVVTLHQVDYALRYCERIVALRQGHVFYDGSSQQ 239
|
Length = 262 |
| >gnl|CDD|213234 cd03267, ABC_NatA_like, ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA | Back alignment and domain information |
|---|
Score = 71.2 bits (175), Expect = 1e-13
Identities = 67/240 (27%), Positives = 109/240 (45%), Gaps = 25/240 (10%)
Query: 369 SKTGRKLDKLSGHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVIS 428
SK+ R K G I S +V I G+IV +G +G+GK+T +
Sbjct: 7 SKSYRVYSKEPGLIGSLK-SLFKRKYREVEALKGISFTIEKGEIVGFIGPNGAGKTTTLK 65
Query: 429 LIERFYEPLSGEILLDGNNIKGLDLKWLRQQIGLV----NQE----PALFATTIRENILY 480
++ +P SGE+ + G + K ++IG+V Q P + + + I Y
Sbjct: 66 ILSGLLQPTSGEVRVAGL-VPWKRRKKFLRRIGVVFGQKTQLWWDLPVIDSFYLLAAI-Y 123
Query: 481 GKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPS 540
A ++ R +LSE + +L E +T V R QLS GQ+ R I+ A++ P
Sbjct: 124 DLPPARFKK--RLDELSELL----DLEELLDTPV--R--QLSLGQRMRAEIAAALLHEPE 173
Query: 541 ILLLDEATSALDAESENSVQEALDRVMVGRTTVVV--AHRLSTI-RNAD-VIAVVQGRKI 596
IL LDE T LD ++ +++ L R T V+ +H + I A V+ + +GR +
Sbjct: 174 ILFLDEPTIGLDVVAQENIRNFLKEYNRERGTTVLLTSHYMKDIEALARRVLVIDKGRLL 233
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein. Length = 236 |
| >gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 73.0 bits (180), Expect = 3e-13
Identities = 62/261 (23%), Positives = 115/261 (44%), Gaps = 22/261 (8%)
Query: 358 MIERD---TMSKASSKTGRKLDKLSGHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVA 414
M+ R+ + K S G + +E +D+S R A+ D ++ AG+IV
Sbjct: 237 MVGREVVLRVVKPPSTPGEVV------LEVEDLS-VKDRRGVTAVKD-VSFEVRAGEIVG 288
Query: 415 LVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLD--LKWLRQQIGLV----NQEPA 468
+ G +G+G+S ++ I +P SG ILL+G ++ G + R + V +
Sbjct: 289 IAGVAGNGQSELVEAISGLRKPASGRILLNGKDVLGRLSPRERRRLGLAYVPEDRHGHGL 348
Query: 469 LFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGI---QLSGGQ 525
+ ++ EN++ G+ D F L E F+ + LSGG
Sbjct: 349 VLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFARELIEEFDVRAPSPDAPARSLSGGN 408
Query: 526 KQRIAISRAIVKNPSILLLDEATSALDAESENSVQEAL-DRVMVGRTTVVVAHRLSTIRN 584
+Q++ ++R + + P +L+ + T LD + + E L + G+ ++++ L I
Sbjct: 409 QQKLILARELARRPDLLIAAQPTRGLDVGAIEFIHERLLELRDAGKAVLLISEDLDEILE 468
Query: 585 -ADVIAVVQGRKIVKTGSHEE 604
+D IAV+ +IV EE
Sbjct: 469 LSDRIAVIYEGRIVGIVPPEE 489
|
Length = 501 |
| >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Score = 73.3 bits (180), Expect = 3e-13
Identities = 58/242 (23%), Positives = 101/242 (41%), Gaps = 43/242 (17%)
Query: 405 LDIPAGKIVALVGGSGSGKSTVISLIERF--YEPLSGEIL----------------LDGN 446
I G+++ ++G SG+GKS ++ ++ YEP SG I+ G
Sbjct: 21 FTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYVERPSKVGE 80
Query: 447 NIKGLDLKWLRQQIGLVNQEPALFATTIREN--------ILYGKDDA------TMEEITR 492
+++ N L + LYG D +EEI
Sbjct: 81 PCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEIGY 140
Query: 493 AAKLSEAMSFISNLPERFETQVGER----GIQLSGGQKQRIAISRAIVKNPSILLLDEAT 548
K EA+ +L E Q+ R LSGG+KQR+ ++R + K P + L DE T
Sbjct: 141 EGK--EAVGRAVDLIE--MVQLSHRITHIARDLSGGEKQRVVLARQLAKEPFLFLADEPT 196
Query: 549 SALDAESENSVQEALDRVMV--GRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEEL 605
LD ++ V AL+ + G + V+ +H I + +D ++ +I + G+ +E+
Sbjct: 197 GTLDPQTAKLVHNALEEAVKASGISMVLTSHWPEVIEDLSDKAIWLENGEIKEEGTPDEV 256
Query: 606 IS 607
++
Sbjct: 257 VA 258
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520 |
| >gnl|CDD|185037 PRK15079, PRK15079, oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Score = 71.7 bits (176), Expect = 3e-13
Identities = 67/227 (29%), Positives = 111/227 (48%), Gaps = 29/227 (12%)
Query: 405 LDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGL-DLKWL--RQQIG 461
L + G+ + +VG SG GKST I + GE+ G ++ G+ D +W R I
Sbjct: 42 LRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLLGMKDDEWRAVRSDIQ 101
Query: 462 LVNQEPALFAT-----TIRENI-----LYGKDDATMEEITRAAKLSEAMSFISNLPERFE 511
++ Q+P A+ TI E I Y + E R + + + NL R+
Sbjct: 102 MIFQDP--LASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPNLINRYP 159
Query: 512 TQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALD----AESENSVQEALDRVM 567
+ SGGQ QRI I+RA++ P +++ DE SALD A+ N +Q+ L R M
Sbjct: 160 HE-------FSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQ-LQREM 211
Query: 568 VGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELISNPNSAY 613
G + + +AH L+ +++ +D + V+ V+ G+++E+ NP Y
Sbjct: 212 -GLSLIFIAHDLAVVKHISDRVLVMYLGHAVELGTYDEVYHNPLHPY 257
|
Length = 331 |
| >gnl|CDD|184127 PRK13540, PRK13540, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 69.2 bits (169), Expect = 3e-13
Identities = 50/175 (28%), Positives = 80/175 (45%), Gaps = 23/175 (13%)
Query: 386 DVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDG 445
++ F Y +P + + +PAG ++ L G +G+GK+T++ LI P GEIL +
Sbjct: 6 ELDFDYHDQP---LLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFER 62
Query: 446 NNIKGLDLKWLRQQIGLVNQEPALFAT-TIRENILY----GKDDATMEEITRAAKLSEAM 500
+IK DL ++Q+ V + T+REN LY + E+ R L +
Sbjct: 63 QSIKK-DLCTYQKQLCFVGHRSGINPYLTLRENCLYDIHFSPGAVGITELCRLFSLEHLI 121
Query: 501 SFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAES 555
+ L LS GQK+++A+ R + + LLDE ALD S
Sbjct: 122 DYPCGL--------------LSSGQKRQVALLRLWMSKAKLWLLDEPLVALDELS 162
|
Length = 200 |
| >gnl|CDD|213212 cd03245, ABCC_bacteriocin_exporters, ATP-binding cassette domain of bacteriocin exporters, subfamily C | Back alignment and domain information |
|---|
Score = 69.5 bits (171), Expect = 4e-13
Identities = 27/60 (45%), Positives = 41/60 (68%), Gaps = 1/60 (1%)
Query: 1016 GTIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAG 1075
G IE R V FSYP++ + + +L +RAG+ +A++G+ GSGKST+L L+ Y PT+G
Sbjct: 1 GRIEFRNVSFSYPNQEIPAL-DNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSG 59
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. Length = 220 |
| >gnl|CDD|185016 PRK15056, PRK15056, manganese/iron transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 70.7 bits (173), Expect = 4e-13
Identities = 59/214 (27%), Positives = 103/214 (48%), Gaps = 36/214 (16%)
Query: 379 SGHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLS 438
+GH +D SF +P G I ALVG +GSGKST+ + F S
Sbjct: 18 NGHTALRDASF----------------TVPGGSIAALVGVNGSGKSTLFKALMGFVRLAS 61
Query: 439 GEILLDGNNIKGLDLKWLRQQ-IGLVNQEPAL---FATTIRENILYGKDDATMEEITRAA 494
G+I + G + + L++ + V Q + F + + ++ G+ M + RA
Sbjct: 62 GKISILGQPTR----QALQKNLVAYVPQSEEVDWSFPVLVEDVVMMGRY-GHMGWLRRAK 116
Query: 495 K-----LSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATS 549
K ++ A++ + + R Q+GE LSGGQK+R+ ++RAI + ++LLDE +
Sbjct: 117 KRDRQIVTAALARVDMVEFRHR-QIGE----LSGGQKKRVFLARAIAQQGQVILLDEPFT 171
Query: 550 ALDAESENSVQEALDRVM-VGRTTVVVAHRLSTI 582
+D ++E + L + G+T +V H L ++
Sbjct: 172 GVDVKTEARIISLLRELRDEGKTMLVSTHNLGSV 205
|
Length = 272 |
| >gnl|CDD|215634 PLN03211, PLN03211, ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Score = 73.4 bits (180), Expect = 4e-13
Identities = 58/181 (32%), Positives = 97/181 (53%), Gaps = 15/181 (8%)
Query: 410 GKIVALVGGSGSGKSTVISLIE-RFY-EPLSGEILLDGNNIKGLDLKWLRQQIGLVNQEP 467
G+I+A++G SGSGKST+++ + R +G IL + K + ++ G V Q+
Sbjct: 94 GEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPT----KQILKRTGFVTQDD 149
Query: 468 ALFA-TTIRENILYGKDDATMEEITRAAKLSEAMSFISNL--PERFETQVGE---RGIQL 521
L+ T+RE +++ + +T+ K+ A S IS L + T +G RGI
Sbjct: 150 ILYPHLTVRETLVFCSLLRLPKSLTKQEKILVAESVISELGLTKCENTIIGNSFIRGI-- 207
Query: 522 SGGQKQRIAISRAIVKNPSILLLDEATSALDAESE-NSVQEALDRVMVGRTTVVVAHRLS 580
SGG+++R++I+ ++ NPS+L+LDE TS LDA + V G+T V H+ S
Sbjct: 208 SGGERKRVSIAHEMLINPSLLILDEPTSGLDATAAYRLVLTLGSLAQKGKTIVTSMHQPS 267
Query: 581 T 581
+
Sbjct: 268 S 268
|
Length = 659 |
| >gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 72.3 bits (178), Expect = 6e-13
Identities = 69/223 (30%), Positives = 111/223 (49%), Gaps = 37/223 (16%)
Query: 395 PDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEP---LSGEILLDG-----N 446
V D L + AG+IV+L G +G+GKST++ ++ Y P GEI+ +G +
Sbjct: 16 GGVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVY-PHGTYEGEIIFEGEELQAS 74
Query: 447 NIKGLDLKWLRQQIGLVNQEPALFAT-TIRENILYGK--------DDATMEEITRAAKLS 497
NI+ + R I +++QE AL ++ ENI G D M RA KL
Sbjct: 75 NIRDTE----RAGIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAM--YLRAQKLL 128
Query: 498 EAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESEN 557
+ N T VG L GQ+Q + I++A+ K +L+LDE T++L ESE
Sbjct: 129 AQLKLDINP----ATPVGN----LGLGQQQLVEIAKALNKQARLLILDEPTASL-TESET 179
Query: 558 SVQEALDRVMV--GRTTVVVAHRLSTIRN-ADVIAVVQ-GRKI 596
+V + R + G + ++H+L+ ++ +D I V++ GR I
Sbjct: 180 AVLLDIIRDLKAHGIACIYISHKLNEVKAISDTICVIRDGRHI 222
|
Length = 506 |
| >gnl|CDD|130262 TIGR01194, cyc_pep_trnsptr, cyclic peptide transporter | Back alignment and domain information |
|---|
Score = 72.3 bits (177), Expect = 6e-13
Identities = 66/231 (28%), Positives = 96/231 (41%), Gaps = 20/231 (8%)
Query: 376 DKLSGHIEFKDVSFCYPSRPDVAIF--DKFCLDIPAGKIVALVGGSGSGKSTVISLIERF 433
DK IE KDV + F L I G IV +VG +G GKST+ L
Sbjct: 332 DKSVDSIELKDVHMNPKAPEGSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGL 391
Query: 434 YEPLSGEILLDGNNIKGLDLKWLRQQIGLVNQEPALFATTIRENILYGKDDATMEEITRA 493
Y P GEILLDG + R LF+ + L+ DD +
Sbjct: 392 YIPQEGEILLDGAAVSADSRDDYRD----------LFSAIFADFHLF--DDLIGPDEGEH 439
Query: 494 AKLSEAMSFISNLPERFETQVGERGIQ----LSGGQKQRIAISRAIVKNPSILLLDEATS 549
A L A ++ L + ++ + G LS GQ++R+A+ A +++ ILL DE +
Sbjct: 440 ASLDNAQQYLQRLEIADKVKIEDGGFSTTTALSTGQQKRLALICAWLEDRPILLFDEWAA 499
Query: 550 ALDAESENSVQEAL--DRVMVGRTTVVVAHRLSTIRNADVIAVVQGRKIVK 598
D + E L D G+T ++++H AD I + IVK
Sbjct: 500 DQDPAFKRFFYEELLPDLKRQGKTIIIISHDDQYFELADQIIKLAAGCIVK 550
|
This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake [Transport and binding proteins, Amino acids, peptides and amines, Transport and binding proteins, Other]. Length = 555 |
| >gnl|CDD|213228 cd03261, ABC_Org_Solvent_Resistant, ATP-binding cassette transport system involved in resistant to organic solvents | Back alignment and domain information |
|---|
Score = 69.1 bits (170), Expect = 7e-13
Identities = 26/59 (44%), Positives = 38/59 (64%), Gaps = 3/59 (5%)
Query: 1018 IELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGK 1076
IELRG+ S+ R + K +L VR G+ +A++G SGSGKST+L LI+ P +G+
Sbjct: 1 IELRGLTKSFGGR---TVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGE 56
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|236707 PRK10522, PRK10522, multidrug transporter membrane component/ATP-binding component; Provisional | Back alignment and domain information |
|---|
Score = 72.3 bits (178), Expect = 7e-13
Identities = 54/172 (31%), Positives = 82/172 (47%), Gaps = 26/172 (15%)
Query: 382 IEFKDVSFCYPSRP-DVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGE 440
+E ++V+F Y V + L I G+++ L+GG+GSGKST+ L+ Y+P SGE
Sbjct: 323 LELRNVTFAYQDNGFSVGPIN---LTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGE 379
Query: 441 ILLDGNNIKGLDLKWLRQQIGLVNQEPALFATTI------RENILYGKDDATMEEITRAA 494
ILLDG + + R+ V + LF + L + +E + A
Sbjct: 380 ILLDGKPVTAEQPEDYRKLFSAVFTDFHLFDQLLGPEGKPANPALV---EKWLERLKMAH 436
Query: 495 KLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDE 546
KL ISN ++LS GQK+R+A+ A+ + ILLLDE
Sbjct: 437 KLELEDGRISN-------------LKLSKGQKKRLALLLALAEERDILLLDE 475
|
Length = 547 |
| >gnl|CDD|213214 cd03247, ABCC_cytochrome_bd, ATP-binding cassette domain of CydCD, subfamily C | Back alignment and domain information |
|---|
Score = 67.3 bits (165), Expect = 9e-13
Identities = 23/59 (38%), Positives = 39/59 (66%), Gaps = 1/59 (1%)
Query: 1018 IELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGK 1076
+ + V FSYP + + V K+ +L+++ G+ +AL+G+SGSGKST+L L+ P G+
Sbjct: 1 LSINNVSFSYPEQEQQV-LKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGE 58
|
The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. Length = 178 |
| >gnl|CDD|213182 cd03215, ABC_Carb_Monos_II, Second domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 66.7 bits (164), Expect = 2e-12
Identities = 48/232 (20%), Positives = 89/232 (38%), Gaps = 67/232 (28%)
Query: 374 KLDKLSGHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERF 433
++ LS +DVSF ++ AG+IV + G G+G++ + +
Sbjct: 6 EVRGLSVKGAVRDVSF----------------EVRAGEIVGIAGLVGNGQTELAEALFGL 49
Query: 434 YEPLSGEILLDGNNIKGLD-LKWLRQQIGLVNQEP---ALFAT-TIRENILYGKDDATME 488
P SGEI LDG + +R I V ++ L ++ ENI
Sbjct: 50 RPPASGEITLDGKPVTRRSPRDAIRAGIAYVPEDRKREGLVLDLSVAENIAL-------- 101
Query: 489 EITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEAT 548
LSGG +Q++ ++R + ++P +L+LDE T
Sbjct: 102 -----------------------------SSLLSGGNQQKVVLARWLARDPRVLILDEPT 132
Query: 549 SALDAESENSVQEALDRVMVGRTTVVVAHRLST-----IRNADVIAVV-QGR 594
+D ++ + + + V++ +S+ + D I V+ +GR
Sbjct: 133 RGVDVGAKAEIYRLIRELADAGKAVLL---ISSELDELLGLCDRILVMYEGR 181
|
This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 182 |
| >gnl|CDD|227019 COG4674, COG4674, Uncharacterized ABC-type transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 68.1 bits (167), Expect = 2e-12
Identities = 61/213 (28%), Positives = 105/213 (49%), Gaps = 9/213 (4%)
Query: 405 LDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGN-NIKGLD-LKWLRQQIGL 462
+ G++ L+G +G+GK+T++ +I P GE+L DG+ ++ L + R IG
Sbjct: 26 FSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLPEHRIARAGIGR 85
Query: 463 VNQEPALF-ATTIRENI-LYGKDDATMEEITRAAKLSEAMSFISNLPE--RFETQVGERG 518
Q+P +F T+REN+ L D ++ A +E I L +
Sbjct: 86 KFQKPTVFENLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLGDERDRLA 145
Query: 519 IQLSGGQKQRIAISRAIVKNPSILLLDEATSAL-DAESENSVQEALDRVMVGRTTVVVAH 577
LS GQKQ + I + ++P +LLLDE + + DAE+E E L + + +VV H
Sbjct: 146 ALLSHGQKQWLEIGMLLAQDPKLLLLDEPVAGMTDAETEK-TAELLKSLAGKHSILVVEH 204
Query: 578 RLSTIRN-ADVIAVVQGRKIVKTGSHEELISNP 609
+ +R AD + V+ ++ GS +E+ ++P
Sbjct: 205 DMGFVREIADKVTVLHEGSVLAEGSLDEVQNDP 237
|
Length = 249 |
| >gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 70.6 bits (173), Expect = 2e-12
Identities = 58/217 (26%), Positives = 102/217 (47%), Gaps = 25/217 (11%)
Query: 396 DVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYE--PLSGEILLDGNNIKGLDL 453
V D L++ G+ V L G +G+GKST++ ++ Y GEI G+ +K ++
Sbjct: 13 GVKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNI 72
Query: 454 KWL-RQQIGLVNQEPALFAT-TIRENILYGK---------DDATMEEITRAAKLSEAMSF 502
+ R I +++QE L ++ ENI G M RA L +
Sbjct: 73 RDTERAGIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAM--YLRAKNLLRELQ- 129
Query: 503 ISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSAL-DAESENSVQE 561
+ VG+ G GGQ+Q + I++A+ K +L+LDE +S+L + E+E +
Sbjct: 130 LDADNV--TRPVGDYG----GGQQQLVEIAKALNKQARLLILDEPSSSLTEKETEILLDI 183
Query: 562 ALDRVMVGRTTVVVAHRLSTIRN-ADVIAVVQ-GRKI 596
D G V ++H+L+ ++ D I V++ G+ +
Sbjct: 184 IRDLKAHGVACVYISHKLNEVKAVCDTICVIRDGQHV 220
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500 |
| >gnl|CDD|182569 PRK10584, PRK10584, putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Score = 67.5 bits (165), Expect = 2e-12
Identities = 56/184 (30%), Positives = 91/184 (49%), Gaps = 30/184 (16%)
Query: 410 GKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKW---LR-QQIGLVNQ 465
G+ +AL+G SGSGKST+++++ + SGE+ L G + +D + LR + +G V Q
Sbjct: 36 GETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAKLRAKHVGFVFQ 95
Query: 466 EPALFAT-TIRENI-----LYGKDDATMEEITRAAKLSEAMSF---ISNLPERFETQVGE 516
L T EN+ L G+ A L E + + +LP
Sbjct: 96 SFMLIPTLNALENVELPALLRGESSRQSRN--GAKALLEQLGLGKRLDHLPA-------- 145
Query: 517 RGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQE---ALDRVMVGRTTV 573
QLSGG++QR+A++RA P +L DE T LD ++ + + + +L+R G T +
Sbjct: 146 ---QLSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREH-GTTLI 201
Query: 574 VVAH 577
+V H
Sbjct: 202 LVTH 205
|
Length = 228 |
| >gnl|CDD|182817 PRK10895, PRK10895, lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 67.6 bits (165), Expect = 2e-12
Identities = 49/154 (31%), Positives = 85/154 (55%), Gaps = 14/154 (9%)
Query: 405 LDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDL-KWLRQQIGLV 463
L + +G+IV L+G +G+GK+T ++ +G I++D +I L L R+ IG +
Sbjct: 24 LTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRGIGYL 83
Query: 464 NQEPALFAT-TIREN---ILYGKDDATMEE-ITRAAKLSEAMSFISNLPERFETQVGERG 518
QE ++F ++ +N +L +DD + E+ RA +L E I +L + G
Sbjct: 84 PQEASIFRRLSVYDNLMAVLQIRDDLSAEQREDRANELMEEFH-IEHLRDSM-------G 135
Query: 519 IQLSGGQKQRIAISRAIVKNPSILLLDEATSALD 552
LSGG+++R+ I+RA+ NP +LLDE + +D
Sbjct: 136 QSLSGGERRRVEIARALAANPKFILLDEPFAGVD 169
|
Length = 241 |
| >gnl|CDD|163483 TIGR03771, anch_rpt_ABC, anchored repeat-type ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 67.2 bits (164), Expect = 2e-12
Identities = 49/207 (23%), Positives = 98/207 (47%), Gaps = 14/207 (6%)
Query: 405 LDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIGLVN 464
L G+++ L+G +G+GK+T++ I P G + + G + + IG V
Sbjct: 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPGKG-----WRHIGYVP 55
Query: 465 QEPAL---FATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGI-Q 520
Q F ++ ++ G+ R +++ + L T++ +R + +
Sbjct: 56 QRHEFAWDFPISVAHTVMSGR--TGHIGWLRRPCVADFAAVRDALRRVGLTELADRPVGE 113
Query: 521 LSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRL 579
LSGGQ+QR+ ++RA+ PS+LLLDE + LD ++ + E + G ++ H L
Sbjct: 114 LSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTELFIELAGAGTAILMTTHDL 173
Query: 580 -STIRNADVIAVVQGRKIVKTGSHEEL 605
+ D + ++ GR ++ G+ ++L
Sbjct: 174 AQAMATCDRVVLLNGR-VIADGTPQQL 199
|
This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown [Transport and binding proteins, Unknown substrate]. Length = 223 |
| >gnl|CDD|234041 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Score = 70.1 bits (172), Expect = 3e-12
Identities = 44/144 (30%), Positives = 64/144 (44%), Gaps = 9/144 (6%)
Query: 939 GLALWYGSVLMGKELASFKSVMKSFMVLIVTALAMGETLALVPD----LLKGNQMAASVF 994
GLA+ G +A + + VL++ LA E A +P L + A +
Sbjct: 249 GLAVLGALWAGGPAVADGRLAPVTLAVLVLLPLAAFEAFAALPAAAQQLTRVRAAAERIV 308
Query: 995 EVLDRKTQV-IGDIGEELTNVEG--TIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMAL 1051
EVLD V G G T+ELR + YP P V +L + G+ +A+
Sbjct: 309 EVLDAAGPVAEGSAPAAGAVGLGKPTLELRDLSAGYPGAPPV--LDGVSLDLPPGERVAI 366
Query: 1052 VGQSGSGKSTVLSLILRFYDPTAG 1075
+G SGSGKST+L+ + DP G
Sbjct: 367 LGPSGSGKSTLLATLAGLLDPLQG 390
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Length = 530 |
| >gnl|CDD|213199 cd03232, ABCG_PDR_domain2, Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 66.1 bits (162), Expect = 3e-12
Identities = 45/179 (25%), Positives = 80/179 (44%), Gaps = 42/179 (23%)
Query: 407 IPAGKIVALVGGSGSGKSTVISLIERFYEP--LSGEILLDGNNIKGLDLKWLRQQIGLVN 464
+ G + AL+G SG+GK+T++ ++ ++GEIL++G + K ++ G V
Sbjct: 30 VKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLD----KNFQRSTGYVE 85
Query: 465 QEPALFAT-TIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSG 523
Q+ T+RE + + +A L RG LS
Sbjct: 86 QQDVHSPNLTVREALRF------------SALL--------------------RG--LSV 111
Query: 524 GQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRV-MVGRTTVVVAHRLST 581
Q++R+ I + PSIL LDE TS LD+++ ++ L ++ G+ + H+ S
Sbjct: 112 EQRKRLTIGVELAAKPSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQPSA 170
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 192 |
| >gnl|CDD|234200 TIGR03411, urea_trans_UrtD, urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Score = 67.2 bits (165), Expect = 3e-12
Identities = 61/233 (26%), Positives = 112/233 (48%), Gaps = 34/233 (14%)
Query: 400 FDKF------CLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLD- 452
FD F L + G++ ++G +G+GK+T++ +I P G +L G ++ GL
Sbjct: 12 FDGFKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPE 71
Query: 453 LKWLRQQIGLVNQEPALF-ATTIREN-------------ILYGKDDATMEEITRAAKLSE 498
+ R IG Q+P +F T+ EN L+ + A ++ ++ E
Sbjct: 72 HQIARAGIGRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKD-----RIEE 126
Query: 499 AMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSAL-DAESEN 557
+ I L + + G LS GQKQ + I ++++P +LLLDE + + D E+E
Sbjct: 127 VLETI-GLADEADRLAGL----LSHGQKQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEK 181
Query: 558 SVQEALDRVMVGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELISNP 609
+ E L + + VVV H + +R+ AD + V+ ++ GS +++ ++P
Sbjct: 182 TA-ELLKSLAGKHSVVVVEHDMEFVRSIADKVTVLHQGSVLAEGSLDQVQADP 233
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 242 |
| >gnl|CDD|226631 COG4152, COG4152, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 68.2 bits (167), Expect = 3e-12
Identities = 49/187 (26%), Positives = 87/187 (46%), Gaps = 25/187 (13%)
Query: 405 LDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIGLVN 464
++P G+I L+G +G+GK+T +I EP GEI +G + + ++ +IG +
Sbjct: 23 FEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLS----QEIKNRIGYLP 78
Query: 465 QEPALFA-TTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGI---Q 520
+E L+ T+ + + Y + M +E + ER E VG++ +
Sbjct: 79 EERGLYPKMTVEDQLKYLAELKGM-------PKAEIQKKLQAWLERLEI-VGKKTKKIKE 130
Query: 521 LSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMV-----GRTTVVV 575
LS G +Q+I A++ P +L+LDE S LD + E L + G T +
Sbjct: 131 LSKGNQQKIQFISAVIHEPELLILDEPFSGLDPVN----VELLKDAIFELKEEGATIIFS 186
Query: 576 AHRLSTI 582
+HR+ +
Sbjct: 187 SHRMEHV 193
|
Length = 300 |
| >gnl|CDD|183231 PRK11614, livF, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 66.4 bits (162), Expect = 6e-12
Identities = 51/176 (28%), Positives = 86/176 (48%), Gaps = 19/176 (10%)
Query: 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEI 441
+ F VS Y + + L I G+IV L+G +G+GK+T++ + SG I
Sbjct: 6 LSFDKVSAHYGK---IQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRI 62
Query: 442 LLDGNNIKGLDL-KWLRQQIGLVNQEPALFA-TTIRENILYG----KDDATMEEITRAAK 495
+ DG +I K +R+ + +V + +F+ T+ EN+ G + D E I +
Sbjct: 63 VFDGKDITDWQTAKIMREAVAIVPEGRRVFSRMTVEENLAMGGFFAERDQFQERIKWVYE 122
Query: 496 LSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSAL 551
L P E ++ +R +SGG++Q +AI RA++ P +LLLDE + L
Sbjct: 123 L---------FPRLHERRI-QRAGTMSGGEQQMLAIGRALMSQPRLLLLDEPSLGL 168
|
Length = 237 |
| >gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 68.7 bits (168), Expect = 9e-12
Identities = 56/228 (24%), Positives = 102/228 (44%), Gaps = 39/228 (17%)
Query: 405 LDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQ-IGLV 463
L + G+I AL+G +G+GKST++ ++ +EP G I ++ N LD K Q IG++
Sbjct: 26 LTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAAQLGIGII 85
Query: 464 NQEPALF-ATTIRENILYGK------------DDATMEEITRAAKLSEAMSFISNLPERF 510
QE ++ T+ EN+ G+ D M M L
Sbjct: 86 YQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRA------AMMLLRVGLKVDL 139
Query: 511 ETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVM--- 567
+ +V LS KQ + I++ ++ + ++++DE TS+L N + L +M
Sbjct: 140 DEKVAN----LSISHKQMLEIAKTLMLDAKVIIMDEPTSSL----TNKEVDYLFLIMNQL 191
Query: 568 --VGRTTVVVAHRLSTIRN-ADVIAVVQ-----GRKIVKTGSHEELIS 607
G V ++H+L+ IR D V++ +V S+++++
Sbjct: 192 RKEGTAIVYISHKLAEIRRICDRYTVMKDGSSVCSGMVSDVSNDDIVR 239
|
Length = 510 |
| >gnl|CDD|184214 PRK13657, PRK13657, cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 68.4 bits (168), Expect = 1e-11
Identities = 30/83 (36%), Positives = 51/83 (61%), Gaps = 3/83 (3%)
Query: 994 FEVLDRKTQVIGDIG-EELTNVEGTIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALV 1052
FEV D V G +L V+G +E V FSY + + V +D + + + G+++A+V
Sbjct: 310 FEVEDAVPDVRDPPGAIDLGRVKGAVEFDDVSFSYDNSRQGV--EDVSFEAKPGQTVAIV 367
Query: 1053 GQSGSGKSTVLSLILRFYDPTAG 1075
G +G+GKST+++L+ R +DP +G
Sbjct: 368 GPTGAGKSTLINLLQRVFDPQSG 390
|
Length = 588 |
| >gnl|CDD|213260 cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of the nitrate and sulfonate transporters | Back alignment and domain information |
|---|
Score = 65.6 bits (161), Expect = 1e-11
Identities = 24/59 (40%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Query: 1018 IELRGVHFSYPS-RPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAG 1075
+E+R V +Y V +D +L V G+ +ALVG SG GKST+L +I PT+G
Sbjct: 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSG 59
|
NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Score = 68.0 bits (167), Expect = 1e-11
Identities = 58/209 (27%), Positives = 90/209 (43%), Gaps = 58/209 (27%)
Query: 385 KDVSFCYPSRPDVAIFDKFCLD-IPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILL 443
VS P P I L P KI ++G +G+GKST++ ++ + +GE
Sbjct: 8 NRVSKVVP--PKKEILKDISLSFFPGAKI-GVLGLNGAGKSTLLRIMAGVDKEFNGEARP 64
Query: 444 DGNNIKGLDLKWLRQQIGLVNQEPALFAT-TIRENI-------------------LYGKD 483
IK +G + QEP L T T+REN+ + +
Sbjct: 65 APG-IK----------VGYLPQEPQLDPTKTVRENVEEGVAEIKDALDRFNEISAKFAEP 113
Query: 484 DATMEE-ITRAAKLSE----------------AMSFISNLPERFETQVGERGIQLSGGQK 526
DA M+ + A+L E AM + P ++ V + LSGG++
Sbjct: 114 DADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDAL-RCPP-WDADVTK----LSGGER 167
Query: 527 QRIAISRAIVKNPSILLLDEATSALDAES 555
+R+A+ R ++ P +LLLDE T+ LDAES
Sbjct: 168 RRVALCRLLLSKPDMLLLDEPTNHLDAES 196
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. Length = 552 |
| >gnl|CDD|132561 TIGR03522, GldA_ABC_ATP, gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Score = 66.3 bits (162), Expect = 1e-11
Identities = 57/229 (24%), Positives = 111/229 (48%), Gaps = 11/229 (4%)
Query: 401 DKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQI 460
D+ + G+IV +G +G+GKST + +I + P SG + + G ++ + K +++ I
Sbjct: 19 DEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQ-NPKEVQRNI 77
Query: 461 G-LVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGI 519
G L P +RE + + M+ ++ E + + PE+ + ++G
Sbjct: 78 GYLPEHNPLYLDMYVREYLQFIAGIYGMKGQLLKQRVEEMIELVGLRPEQHK-KIG---- 132
Query: 520 QLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRL 579
QLS G +QR+ +++A++ +P +L+LDE T+ LD ++ + + +T ++ H +
Sbjct: 133 QLSKGYRQRVGLAQALIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIGKDKTIILSTHIM 192
Query: 580 STIRNA--DVIAVVQGRKIVKTGSHEELISNPNSAYAALVQLQEAASQQ 626
+ VI + +G KIV +EL S N V+ +E Q
Sbjct: 193 QEVEAICDRVIIINKG-KIVADKKLDEL-SAANKKQVIEVEFEEQIDLQ 239
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. Length = 301 |
| >gnl|CDD|213238 cd03271, ABC_UvrA_II, ATP-binding cassette domain II of the excision repair protein UvrA | Back alignment and domain information |
|---|
Score = 64.9 bits (159), Expect = 2e-11
Identities = 65/252 (25%), Positives = 106/252 (42%), Gaps = 62/252 (24%)
Query: 405 LDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIG--- 461
+DIP G + + G SGSGKS++I + Y L+ + L D + I
Sbjct: 16 VDIPLGVLTCVTGVSGSGKSSLI--NDTLYPALARRLHLKKEQPGNHDRIEGLEHIDKVI 73
Query: 462 LVNQEP-------------ALFATTIRE----------------NILY-GKDDATMEEIT 491
+++Q P +F IRE + Y GK A + ++T
Sbjct: 74 VIDQSPIGRTPRSNPATYTGVF-DEIRELFCEVCKGKRYNRETLEVRYKGKSIADVLDMT 132
Query: 492 RAAKLSEAMSFISNLP---ERFET---------QVGERGIQLSGGQKQRIAISRAIVK-- 537
+ EA+ F N+P + +T ++G+ LSGG+ QRI +++ + K
Sbjct: 133 ----VEEALEFFENIPKIARKLQTLCDVGLGYIKLGQPATTLSGGEAQRIKLAKELSKRS 188
Query: 538 -NPSILLLDEATSALDAESENSVQEALDR-VMVGRTTVVVAHRLSTIRNADVI------A 589
++ +LDE T+ L + E L R V G T VV+ H L I+ AD I
Sbjct: 189 TGKTLYILDEPTTGLHFHDVKKLLEVLQRLVDKGNTVVVIEHNLDVIKCADWIIDLGPEG 248
Query: 590 VVQGRKIVKTGS 601
G ++V +G+
Sbjct: 249 GDGGGQVVASGT 260
|
Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases. Length = 261 |
| >gnl|CDD|182906 PRK11022, dppD, dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 65.9 bits (161), Expect = 3e-11
Identities = 73/291 (25%), Positives = 123/291 (42%), Gaps = 55/291 (18%)
Query: 374 KLDKLSGHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKS----TVISL 429
+DKLS H + F D+ + G++V +VG SGSGKS ++ L
Sbjct: 5 NVDKLSVHFGDESAPF--------RAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGL 56
Query: 430 IERFYEPLSGEILLDGNNIKGLDLKWLRQQIG----LVNQEPALFATTIRENILYGKDDA 485
I+ ++ ++ +G +++ + K R +G ++ Q+P T++ N Y
Sbjct: 57 IDYPGRVMAEKLEFNGQDLQRISEKERRNLVGAEVAMIFQDPM---TSL--NPCYTVGFQ 111
Query: 486 TMEEI------TRAAKLSEAMSFISNLPERFETQVGERGI------------QLSGGQKQ 527
ME I + + A+ + QVG I QLSGG Q
Sbjct: 112 IMEAIKVHQGGNKKTRRQRAIDLL--------NQVG---IPDPASRLDVYPHQLSGGMSQ 160
Query: 528 RIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTT--VVVAHRLSTI-RN 584
R+ I+ AI P +L+ DE T+ALD + + E L + V++ H L+ +
Sbjct: 161 RVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLALVAEA 220
Query: 585 ADVIAVVQGRKIVKTGSHEELISNPNSAY--AALVQLQEAASQQSNSSQCP 633
A I V+ ++V+TG ++ P Y A L L E A ++ + P
Sbjct: 221 AHKIIVMYAGQVVETGKAHDIFRAPRHPYTQALLRALPEFAQDKARLASLP 271
|
Length = 326 |
| >gnl|CDD|234189 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Score = 66.8 bits (164), Expect = 4e-11
Identities = 26/65 (40%), Positives = 41/65 (63%), Gaps = 1/65 (1%)
Query: 1012 TNVEGTIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYD 1071
++G IE R V F+YP + + + +L +R G+ +A++G+ GSGKST+L L+L Y
Sbjct: 458 PRLQGEIEFRNVSFAYPGQETPAL-DNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQ 516
Query: 1072 PTAGK 1076
PT G
Sbjct: 517 PTEGS 521
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]. Length = 694 |
| >gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain | Back alignment and domain information |
|---|
Score = 62.3 bits (152), Expect = 4e-11
Identities = 22/59 (37%), Positives = 34/59 (57%), Gaps = 3/59 (5%)
Query: 1019 ELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKA 1077
E+ + F Y R + +L ++AG+ +ALVG +GSGKST+L I PT+G+
Sbjct: 1 EIENLSFRYGGRT---ALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEI 56
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157 |
| >gnl|CDD|233596 TIGR01846, type_I_sec_HlyB, type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Score = 66.7 bits (163), Expect = 5e-11
Identities = 55/224 (24%), Positives = 90/224 (40%), Gaps = 51/224 (22%)
Query: 878 ANMLAAEAVSNIRTVAAFCSEDKVLELYSRELVEPSKRSFIRGQIAGIFYGISQFFIFSS 937
A E+V+ I T+ A +E + + R+L SF + I + +
Sbjct: 316 ATSFLVESVTGIETIKATATEPQFQNRWDRQLAAYVAASFRVTNLGNIAGQAIELIQKLT 375
Query: 938 YGLALWYGSVLMGKELASFKSVMKSFMVLIVTALAMGETLALVPDLLKGNQMAASVFEVL 997
+ + LW+G+ L +I AL+ G+ +A N +A V + +
Sbjct: 376 FAILLWFGAHL-----------------VIGGALSPGQLVAF-------NMLAGRVTQPV 411
Query: 998 DRKTQV-------------IGDIGEE-----------LTNVEGTIELRGVHFSY-PSRPE 1032
R Q+ +GDI L + G I + F Y P PE
Sbjct: 412 LRLAQLWQDFQQTGIALERLGDILNSPTEPRSAGLAALPELRGAITFENIRFRYAPDSPE 471
Query: 1033 VVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGK 1076
V+ + NL ++ G+ + +VG SGSGKST+ L+ R Y P G+
Sbjct: 472 VL--SNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQ 513
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 694 |
| >gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 66.4 bits (162), Expect = 5e-11
Identities = 65/263 (24%), Positives = 118/263 (44%), Gaps = 50/263 (19%)
Query: 394 RPDVAIFDKFCLDIPAGKIVALVGGSGSGKS-TVISLIERFYEPLSGEI-----LLDGNN 447
+ +A + G+ +A+VG SGSGKS T ++L+ R E G + LL +
Sbjct: 26 QQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALM-RLLEQAGGLVQCDKMLLRRRS 84
Query: 448 IKGLDLKWLRQQ---------IGLVNQEPAL-----------FATTIRENILYGKDDATM 487
+ ++L + ++ QEP A +IR + +++A +
Sbjct: 85 RQVIELSEQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMV 144
Query: 488 E--EITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLD 545
E + ++ EA + +S P QLSGG +QR+ I+ A+ P++L+ D
Sbjct: 145 EAKRMLDQVRIPEAQTILSRYPH-----------QLSGGMRQRVMIAMALSCRPAVLIAD 193
Query: 546 EATSALDAESENSVQEALDRVM---VGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGS 601
E T+ALD + + + L +V+ + + + H + + AD + V+ + V+TGS
Sbjct: 194 EPTTALDVTIQAQILQ-LIKVLQKEMSMGVIFITHDMGVVAEIADRVLVMYQGEAVETGS 252
Query: 602 HEELISNPNSAY-----AALVQL 619
E++ P Y AA+ QL
Sbjct: 253 VEQIFHAPQHPYTRALLAAVPQL 275
|
Length = 623 |
| >gnl|CDD|225265 COG2401, COG2401, ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only] | Back alignment and domain information |
|---|
Score = 66.4 bits (162), Expect = 5e-11
Identities = 51/184 (27%), Positives = 82/184 (44%), Gaps = 30/184 (16%)
Query: 405 LDIPAGKIVALVGGSGSGKSTVISLIERF--------YEPLSGEILLDGNNIKGLDLKWL 456
L+I G +VA+VG SG+GK+T++ +I Y P SG++ + N + L
Sbjct: 404 LEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKNTVSALIPGEY 463
Query: 457 RQQIGLVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGE 516
+ G V L + T D EI A LS+A+ + E
Sbjct: 464 EPEFGEVTILEHLRSKT--------GDLNAAVEILNRAGLSDAVLYRRKFSE-------- 507
Query: 517 RGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRV--MVGRTTVV 574
LS GQK+R +++ + + P++LL+DE + LD + V + + G T +V
Sbjct: 508 ----LSTGQKERAKLAKLLAERPNVLLIDEFAAHLDELTAVRVARKISELAREAGITLIV 563
Query: 575 VAHR 578
V HR
Sbjct: 564 VTHR 567
|
Length = 593 |
| >gnl|CDD|226952 COG4586, COG4586, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 64.7 bits (158), Expect = 5e-11
Identities = 54/211 (25%), Positives = 100/211 (47%), Gaps = 21/211 (9%)
Query: 405 LDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLR------- 457
+IP G+IV +G +G+GKST + ++ P SG++ ++G + ++LR
Sbjct: 45 FEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGKDPFRRREEYLRSIGLVMG 104
Query: 458 QQIGLVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGER 517
Q++ L PAL + + + ++Y D E R L+E + E +
Sbjct: 105 QKLQLWWDLPALDSLEVLK-LIYEIPDDEFAE--RLDFLTEILD--------LEGFLKWP 153
Query: 518 GIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGR-TTVVVA 576
+LS GQ+ R ++ A++ P +L LDE T LD ++ +++E L R TV++
Sbjct: 154 VRKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQANIREFLKEYNEERQATVLLT 213
Query: 577 -HRLSTI-RNADVIAVVQGRKIVKTGSHEEL 605
H I D + ++ ++V G+ +L
Sbjct: 214 THIFDDIATLCDRVLLIDQGQLVFDGTLAQL 244
|
Length = 325 |
| >gnl|CDD|227118 COG4778, PhnL, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 63.2 bits (154), Expect = 6e-11
Identities = 57/182 (31%), Positives = 87/182 (47%), Gaps = 27/182 (14%)
Query: 399 IFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILL--DGNNIKGLD---- 452
+ L + AG+ V L G SGSGKST++ + Y P G+IL+ +G + +
Sbjct: 26 VLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHEGEWVDLVTAEPR 85
Query: 453 --LKWLRQQIGLVNQEPALFATTI-RENILYGKDDATMEE-----ITRAAKLSEAMSFIS 504
L+ R IG V+Q F I R + L D E + R ++A ++
Sbjct: 86 EVLEVRRTTIGYVSQ----FLRVIPRVSAL----DVVAEPLLARGVPREVARAKAADLLT 137
Query: 505 --NLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEA 562
NLPER + SGG++QR+ I+R + + ILLLDE T++LDA + V E
Sbjct: 138 RLNLPERLWSLAPA---TFSGGEQQRVNIARGFIVDYPILLLDEPTASLDATNRAVVVEL 194
Query: 563 LD 564
+
Sbjct: 195 IR 196
|
Length = 235 |
| >gnl|CDD|227321 COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 65.0 bits (159), Expect = 1e-10
Identities = 80/402 (19%), Positives = 148/402 (36%), Gaps = 49/402 (12%)
Query: 697 YGVCGTICAIIAGAQMPLFALGVSQALVAYYMDWDTTQREVKKITILFCCAAVITVIVHA 756
+ V + A+++G + A ++ L Q + + +L + +
Sbjct: 1 WLVISALLAVLSGIAIIAQAALLADILTKLIEG-QLFQSLLPLLILLLIALVLRAFLAWL 59
Query: 757 IEHLSFGIMGERLTLRVREKMFSAILSNEIGWFDEMDNSS--SILASRLESDATLLRTIV 814
E L + ++ +R+ + + + + S ++ +E
Sbjct: 60 RERLGY-RAAAKVRASLRQLVLDKLAKLGPAFIAQKPAGSAATLALEGIEQLEPYY---- 114
Query: 815 VDRSTILIQNF--GLVTASFVIA-FILNWRITLVVVATYPLIISGHISEKLFFQGYGGNL 871
+ L Q F +V +IA F NW L+++ T PLI + L G
Sbjct: 115 ---ARYLPQMFLSAIVPLLILIAIFFFNWAAALILLITAPLIP---LFMILV-----GLA 163
Query: 872 SKAYLKANMLAAEAVSN--------IRTVAAFCSEDKVLELYSRELVEPSKR------SF 917
+K + A +S + T+ AF E + + S+ S
Sbjct: 164 AKDASEKQFSALARLSGHFLDRLRGLETLRAF----GRTEATEERIRKDSEDFRKATMSV 219
Query: 918 IRGQIAGIFYGISQFFIFSSYGL-ALWYGSVLMGKELASFKSVMKSFMVLIVTA---LAM 973
+R + +FF + S L A++ G L+G+ + + VLI+ +
Sbjct: 220 LRIAFLSSA--VLEFFAYLSIALVAVYIGFRLLGEGDLTLFAG---LFVLILAPEFFQPL 274
Query: 974 GETLALVPDLLKGNQMAASVFEVLDRKTQVIGDIGEELTNVEGTIELRGVHFSYPSRPEV 1033
+ + G A +F +L+ G + E IE+ + S+
Sbjct: 275 RDLGSFFHAAAAGEAAADKLFTLLESPVATPGSGEKAEVANEPPIEISLENLSFRYPDGK 334
Query: 1034 VIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAG 1075
D NL ++AG+ ALVG SG+GKST+L+L+L F PT G
Sbjct: 335 PALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQG 376
|
Length = 559 |
| >gnl|CDD|224052 COG1127, Ttg2A, ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 63.4 bits (155), Expect = 1e-10
Identities = 28/65 (43%), Positives = 38/65 (58%), Gaps = 3/65 (4%)
Query: 1012 TNVEGTIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYD 1071
+ E IE+RGV S+ R VI +L V G+ +A++G SGSGKST+L LIL
Sbjct: 3 ASPEPLIEVRGVTKSFGDR---VILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLR 59
Query: 1072 PTAGK 1076
P G+
Sbjct: 60 PDKGE 64
|
Length = 263 |
| >gnl|CDD|236992 PRK11819, PRK11819, putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 64.8 bits (159), Expect = 1e-10
Identities = 49/185 (26%), Positives = 81/185 (43%), Gaps = 55/185 (29%)
Query: 408 PAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIGLVNQEP 467
P KI ++G +G+GKST++ ++ + GE G+ ++G + QEP
Sbjct: 32 PGAKI-GVLGLNGAGKSTLLRIMAGVDKEFEGEARPA----PGI-------KVGYLPQEP 79
Query: 468 ALFAT-TIRENI-------------------LYGKDDATMEE-ITRAAKLSE-------- 498
L T+REN+ Y + DA + +L E
Sbjct: 80 QLDPEKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAW 139
Query: 499 --------AMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSA 550
AM + P + +V +LSGG+++R+A+ R +++ P +LLLDE T+
Sbjct: 140 DLDSQLEIAMDAL-RCPPW-DAKVT----KLSGGERRRVALCRLLLEKPDMLLLDEPTNH 193
Query: 551 LDAES 555
LDAES
Sbjct: 194 LDAES 198
|
Length = 556 |
| >gnl|CDD|233665 TIGR01978, sufC, FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Score = 62.3 bits (152), Expect = 1e-10
Identities = 59/227 (25%), Positives = 95/227 (41%), Gaps = 27/227 (11%)
Query: 396 DVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLI--ERFYEPLSGEILLDGNNIKGLDL 453
D I L + G+I A++G +GSGKST+ I YE SG IL G ++ L+L
Sbjct: 12 DKEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDL--LEL 69
Query: 454 K---WLRQQIGLVNQEP--------ALF---ATTIRENILYGKDDATMEEITRAAKLSEA 499
+ R + L Q P F A R + + ++ +
Sbjct: 70 EPDERARAGLFLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLAL 129
Query: 500 MSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSV 559
+ R G SGG+K+R I + + P + +LDE S LD ++ V
Sbjct: 130 LGMDEEFLNRS-VNEG-----FSGGEKKRNEILQMALLEPKLAILDEIDSGLDIDALKIV 183
Query: 560 QEALDRVMV-GRTTVVVAH--RLSTIRNADVIAVVQGRKIVKTGSHE 603
E ++R+ R+ +++ H RL D + V+ +IVK+G E
Sbjct: 184 AEGINRLREPDRSFLIITHYQRLLNYIKPDYVHVLLDGRIVKSGDVE 230
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PMID:12554644) or associated with the membrane (PMID:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 243 |
| >gnl|CDD|236755 PRK10762, PRK10762, D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Score = 64.3 bits (157), Expect = 2e-10
Identities = 61/201 (30%), Positives = 101/201 (50%), Gaps = 20/201 (9%)
Query: 393 SRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLD 452
+ P V L++ G+++ALVG +G+GKST++ ++ Y +G IL G +
Sbjct: 13 AFPGVKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNG 72
Query: 453 LKWLRQQ-IGLVNQEPALFAT-TIRENILYGKDDAT-MEEITRAAKLSEAMSFIS--NLP 507
K ++ IG+++QE L TI ENI G++ I +EA ++ NL
Sbjct: 73 PKSSQEAGIGIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLR 132
Query: 508 ERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSAL-DAESENSVQEALDRV 566
+ VGE LS G++Q + I++ + ++++DE T AL D E+ E+L RV
Sbjct: 133 FSSDKLVGE----LSIGEQQMVEIAKVLSFESKVIIMDEPTDALTDTET-----ESLFRV 183
Query: 567 M-----VGRTTVVVAHRLSTI 582
+ GR V ++HRL I
Sbjct: 184 IRELKSQGRGIVYISHRLKEI 204
|
Length = 501 |
| >gnl|CDD|130260 TIGR01192, chvA, glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Score = 63.8 bits (155), Expect = 3e-10
Identities = 36/117 (30%), Positives = 61/117 (52%), Gaps = 17/117 (14%)
Query: 960 MKSFMVLIVTALAMGETLALVPDLLKGNQMAASVFEVLDRKTQVIGDIGEELTNVEGTIE 1019
M F+ I A A E + SVF+ + D E L NV+G +E
Sbjct: 292 MSGFITQIFEARAKLEDFF---------DLEDSVFQ-----REEPADAPE-LPNVKGAVE 336
Query: 1020 LRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGK 1076
R + F + + + V D + + +AG+++A+VG +G+GK+T+++L+ R YDPT G+
Sbjct: 337 FRHITFEFANSSQGV--FDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQ 391
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 585 |
| >gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
Score = 59.3 bits (143), Expect = 3e-10
Identities = 40/199 (20%), Positives = 66/199 (33%), Gaps = 61/199 (30%)
Query: 410 GKIVALVGGSGSGKSTVISLIERFYEPLSGE-ILLDGNNIKGLDLKWLRQQIGLVNQEPA 468
G+++ +VG GSGK+T+ + R P G I +DG +I L L I
Sbjct: 2 GEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLII-------- 53
Query: 469 LFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQR 528
VG + SG + R
Sbjct: 54 ---------------------------------------------VGGKKASGSGELRLR 68
Query: 529 IAISRAIVKNPSILLLDEATSALDAESENSVQEALD-------RVMVGRTTVVVAHRLST 581
+A++ A P +L+LDE TS LDAE E + + + T ++ +
Sbjct: 69 LALALARKLKPDVLILDEITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVILTTNDEKD 128
Query: 582 IRNADVIAVVQGRKIVKTG 600
+ A + R ++
Sbjct: 129 LGPALLRRRFDRRIVLLLI 147
|
AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. Length = 148 |
| >gnl|CDD|213192 cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 60.2 bits (147), Expect = 4e-10
Identities = 22/58 (37%), Positives = 36/58 (62%), Gaps = 1/58 (1%)
Query: 1019 ELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGK 1076
EL+ + FSYP + D +L ++ G+ + +VG +GSGKST+L L+ PT+G+
Sbjct: 1 ELKNLSFSYPDGARPAL-DDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGE 57
|
Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 211 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 62.9 bits (154), Expect = 5e-10
Identities = 60/251 (23%), Positives = 108/251 (43%), Gaps = 46/251 (18%)
Query: 374 KLDKLSGHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERF 433
++ LSG + +DVSF + AG+I+ + G G+G++ + +
Sbjct: 265 EVRNLSGGGKVRDVSF----------------TVRAGEILGIAGLVGAGRTELARALFGA 308
Query: 434 YEPLSGEILLDGNNIKGLD-LKWLRQQIGLV---NQEPALFAT-TIRENILYGKDDATME 488
SGEILLDG ++ ++ I V + L +I ENI
Sbjct: 309 RPASSGEILLDGKPVRIRSPRDAIKAGIAYVPEDRKSEGLVLDMSIAENITLASLRRFSR 368
Query: 489 E--ITRAAKLSEAMSFISNLPERF---ETQVGERGIQLSGGQKQRIAISRAIVKNPSILL 543
I R + + A +I L + E +G LSGG +Q++ ++R + +P +L+
Sbjct: 369 RGLIDRRKERALAERYIRRLRIKTPSPEQPIGT----LSGGNQQKVVLARWLATDPKVLI 424
Query: 544 LDEATSALD--AESE--NSVQEALDRVMVGRTTVVVAHRLST-----IRNADVIAVVQGR 594
LDE T +D A++E ++E G+ +++ S+ + +D I V++
Sbjct: 425 LDEPTRGIDVGAKAEIYRLIRELAAE---GKAILMI----SSELPELLGLSDRILVMREG 477
Query: 595 KIVKTGSHEEL 605
+IV EE
Sbjct: 478 RIVGELDREEA 488
|
Length = 500 |
| >gnl|CDD|214372 CHL00131, ycf16, sulfate ABC transporter protein; Validated | Back alignment and domain information |
|---|
Score = 60.8 bits (148), Expect = 5e-10
Identities = 55/216 (25%), Positives = 102/216 (47%), Gaps = 23/216 (10%)
Query: 405 LDIPAGKIVALVGGSGSGKSTVISLIERF--YEPLSGEILLDGNNIKGLDLKWLRQQIGL 462
L I G+I A++G +GSGKST+ +I Y+ L G+IL G +I L+ + R +G+
Sbjct: 28 LSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEPE-ERAHLGI 86
Query: 463 ------------VNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERF 510
V+ L + G + ++ + ++E + + + F
Sbjct: 87 FLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPE--LDPLEFLEIINEKLKLV-GMDPSF 143
Query: 511 ETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVM-VG 569
++ G SGG+K+R I + + + + +LDE S LD ++ + E ++++M
Sbjct: 144 LSRNVNEG--FSGGEKKRNEILQMALLDSELAILDETDSGLDIDALKIIAEGINKLMTSE 201
Query: 570 RTTVVVAH--RLSTIRNADVIAVVQGRKIVKTGSHE 603
+ +++ H RL D + V+Q KI+KTG E
Sbjct: 202 NSIILITHYQRLLDYIKPDYVHVMQNGKIIKTGDAE 237
|
Length = 252 |
| >gnl|CDD|213224 cd03257, ABC_NikE_OppD_transporters, ATP-binding cassette domain of nickel/oligopeptides specific transporters | Back alignment and domain information |
|---|
Score = 60.2 bits (147), Expect = 6e-10
Identities = 21/60 (35%), Positives = 36/60 (60%), Gaps = 1/60 (1%)
Query: 1018 IELRGVHFSYPSRPEVV-IFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGK 1076
+E++ + S+P+ V D + ++ G+++ LVG+SGSGKST+ IL PT+G
Sbjct: 2 LEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGS 61
|
The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. Length = 228 |
| >gnl|CDD|182733 PRK10790, PRK10790, putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Score = 62.8 bits (153), Expect = 7e-10
Identities = 31/83 (37%), Positives = 50/83 (60%), Gaps = 4/83 (4%)
Query: 993 VFEVLDRKTQVIGDIGEELTNVEGTIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALV 1052
VFE++D Q G+ L + G I++ V F+Y R + ++ ++ NL V + +ALV
Sbjct: 318 VFELMDGPRQQYGNDDRPLQS--GRIDIDNVSFAY--RDDNLVLQNINLSVPSRGFVALV 373
Query: 1053 GQSGSGKSTVLSLILRFYDPTAG 1075
G +GSGKST+ SL++ +Y T G
Sbjct: 374 GHTGSGKSTLASLLMGYYPLTEG 396
|
Length = 592 |
| >gnl|CDD|182852 PRK10938, PRK10938, putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Score = 62.3 bits (152), Expect = 7e-10
Identities = 65/241 (26%), Positives = 99/241 (41%), Gaps = 33/241 (13%)
Query: 405 LDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNI---------KGLDLKW 455
L + AG A VG +GSGKS + + LSGE ++I K + +W
Sbjct: 24 LTLNAGDSWAFVGANGSGKSALARALAGELPLLSGERQSQFSHITRLSFEQLQKLVSDEW 83
Query: 456 LRQQIGLVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMSF-ISNLPERFETQV 514
R +++ T E I D R +L A F I+ L +R
Sbjct: 84 QRNNTDMLSPGEDDTGRTTAEIIQDEVKDPA-----RCEQL--AQQFGITALLDR----- 131
Query: 515 GERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMV-GRTTV 573
R LS G+ ++ + +A++ P +L+LDE LD S + E L + G T V
Sbjct: 132 --RFKYLSTGETRKTLLCQALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQSGITLV 189
Query: 574 VVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELISNPNSAYAALVQLQEAASQQSNSSQC 632
+V +R I + V+ + +TG EE++ ALV Q A S+Q Q
Sbjct: 190 LVLNRFDEIPDFVQFAGVLADCTLAETGEREEILQQ------ALVA-QLAHSEQLEGVQL 242
Query: 633 P 633
P
Sbjct: 243 P 243
|
Length = 490 |
| >gnl|CDD|213262 cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cassette domain of the osmoprotectant transporter | Back alignment and domain information |
|---|
Score = 59.6 bits (145), Expect = 1e-09
Identities = 21/59 (35%), Positives = 34/59 (57%), Gaps = 2/59 (3%)
Query: 1018 IELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGK 1076
IE V Y + V + NL++ G+ + L+G SGSGK+T + +I R +PT+G+
Sbjct: 1 IEFENVTKRYGGGKKAV--NNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGE 57
|
OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 242 |
| >gnl|CDD|184125 PRK13538, PRK13538, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 59.0 bits (144), Expect = 1e-09
Identities = 41/180 (22%), Positives = 74/180 (41%), Gaps = 42/180 (23%)
Query: 393 SRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGL- 451
R + +F + AG++V + G +G+GK++++ ++ P +GE+L G I+
Sbjct: 10 ERDERILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQR 69
Query: 452 -----DLKWLRQQIGLVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNL 506
DL +L Q G+ K + T E L +
Sbjct: 70 DEYHQDLLYLGHQPGI-------------------KTELTALE-----NLRFYQR-LHGP 104
Query: 507 PERFET-----QVGERGI------QLSGGQKQRIAISRAIVKNPSILLLDEATSALDAES 555
+ QVG G QLS GQ++R+A++R + + +LDE +A+D +
Sbjct: 105 GDDEALWEALAQVGLAGFEDVPVRQLSAGQQRRVALARLWLTRAPLWILDEPFTAIDKQG 164
|
Length = 204 |
| >gnl|CDD|213188 cd03221, ABCF_EF-3, ATP-binding cassette domain of elongation factor 3, subfamily F | Back alignment and domain information |
|---|
Score = 57.5 bits (140), Expect = 1e-09
Identities = 23/44 (52%), Positives = 37/44 (84%)
Query: 520 QLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEAL 563
QLSGG+K R+A+++ +++NP++LLLDE T+ LD ES +++EAL
Sbjct: 70 QLSGGEKMRLALAKLLLENPNLLLLDEPTNHLDLESIEALEEAL 113
|
Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. Length = 144 |
| >gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding protein-dependent transport systems | Back alignment and domain information |
|---|
Score = 58.0 bits (141), Expect = 2e-09
Identities = 22/59 (37%), Positives = 34/59 (57%), Gaps = 3/59 (5%)
Query: 1018 IELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGK 1076
+EL+ V Y + + D +L + AG+ +AL+G SGSGKST+L I +P +G
Sbjct: 1 LELKNVSKRYG---QKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGS 56
|
This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 178 |
| >gnl|CDD|224059 COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 58.7 bits (143), Expect = 2e-09
Identities = 28/60 (46%), Positives = 39/60 (65%), Gaps = 1/60 (1%)
Query: 1018 IELRGVHFSYPSRPEVV-IFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGK 1076
IEL+ V Y E V KD NL++ AG+ +A+VG SGSGKST+L+L+ PT+G+
Sbjct: 2 IELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGE 61
|
Length = 226 |
| >gnl|CDD|213222 cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein | Back alignment and domain information |
|---|
Score = 58.7 bits (143), Expect = 2e-09
Identities = 23/60 (38%), Positives = 37/60 (61%), Gaps = 1/60 (1%)
Query: 1018 IELRGVHFSYPSRPE-VVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGK 1076
IEL+ + +Y E V K +L + G+ +A+VG SGSGKST+L+++ PT+G+
Sbjct: 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGE 60
|
This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. Length = 218 |
| >gnl|CDD|224041 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 58.7 bits (143), Expect = 2e-09
Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 3/59 (5%)
Query: 1018 IELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGK 1076
+E+ GV S+ V + +D NL V G+ +A++G SG GKST+L LI PT+G+
Sbjct: 4 LEIEGVSKSFGG---VEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGE 59
|
Length = 248 |
| >gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A | Back alignment and domain information |
|---|
Score = 57.0 bits (139), Expect = 3e-09
Identities = 18/60 (30%), Positives = 32/60 (53%), Gaps = 3/60 (5%)
Query: 1018 IELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKA 1077
IE+R + Y + D +L V G+ L+G +G+GK+T++ +IL P +G+
Sbjct: 1 IEVRNLSKRYGKKT---ALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEI 57
|
This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 173 |
| >gnl|CDD|213204 cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-binding cassette domain 2 of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 58.2 bits (141), Expect = 4e-09
Identities = 44/190 (23%), Positives = 83/190 (43%), Gaps = 39/190 (20%)
Query: 401 DKFCLDIPAG-----KIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKW 455
+F L++ G +++ ++G +G GK+T I ++ +P G+I ++ + + +
Sbjct: 11 GEFTLEVEGGSISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTVS-----Y 65
Query: 456 LRQQIGLVNQEPALFATTIRENILYGKDDATME------EITRAAKLSEAMSFISNLPER 509
Q I A + T+R+ +L EI + ++ + + +PE
Sbjct: 66 KPQYI------KADYEGTVRD-LLSSITKDFYTHPYFKTEIAKPLQIEQILD--REVPE- 115
Query: 510 FETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVG 569
LSGG+ QR+AI+ + K+ I LLDE ++ LD E + + R
Sbjct: 116 -----------LSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASKVIRRFAEN 164
Query: 570 --RTTVVVAH 577
+T VV H
Sbjct: 165 NEKTAFVVEH 174
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 246 |
| >gnl|CDD|236729 PRK10636, PRK10636, putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 60.2 bits (146), Expect = 4e-09
Identities = 56/202 (27%), Positives = 91/202 (45%), Gaps = 48/202 (23%)
Query: 396 DVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKW 455
D I D L++ G + L+G +G+GKST+I L+ P+SGEI L KG+ L +
Sbjct: 324 DRIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLA----KGIKLGY 379
Query: 456 LRQQIGLVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQ-- 513
Q +Q L A D++ ++ + R A P+ E +
Sbjct: 380 FAQ-----HQLEFLRA-----------DESPLQHLARLA------------PQELEQKLR 411
Query: 514 ------------VGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQE 561
V E + SGG+K R+ ++ + + P++LLLDE T+ LD + ++ E
Sbjct: 412 DYLGGFGFQGDKVTEETRRFSGGEKARLVLALIVWQRPNLLLLDEPTNHLDLDMRQALTE 471
Query: 562 ALDRVMVGRTTVVVAHRLSTIR 583
AL + VVV+H +R
Sbjct: 472 AL--IDFEGALVVVSHDRHLLR 491
|
Length = 638 |
| >gnl|CDD|181939 PRK09544, znuC, high-affinity zinc transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 58.2 bits (141), Expect = 4e-09
Identities = 51/204 (25%), Positives = 97/204 (47%), Gaps = 33/204 (16%)
Query: 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEI 441
+ ++VS + R + L++ GKI+ L+G +G+GKST++ ++ P G I
Sbjct: 5 VSLENVSVSFGQR---RVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVI 61
Query: 442 LLDGNNIKGLDLKWLRQQIGLVNQEPALFATTIRENILYG--KDDATMEEITR--AAKLS 497
+G L + ++ Q++ L + L T R L K + + + R A L
Sbjct: 62 KRNG----KLRIGYVPQKLYL---DTTLPLTVNRFLRLRPGTKKEDILPALKRVQAGHLI 114
Query: 498 EAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESEN 557
+A P + +LSGG+ QR+ ++RA++ P +L+LDE T +D +
Sbjct: 115 DA-------PMQ----------KLSGGETQRVLLARALLNRPQLLVLDEPTQGVDVNGQV 157
Query: 558 SVQEALD--RVMVGRTTVVVAHRL 579
++ + +D R + ++V+H L
Sbjct: 158 ALYDLIDQLRRELDCAVLMVSHDL 181
|
Length = 251 |
| >gnl|CDD|184132 PRK13547, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 58.3 bits (141), Expect = 5e-09
Identities = 62/237 (26%), Positives = 105/237 (44%), Gaps = 46/237 (19%)
Query: 398 AIFDKFCLDIPAGKIVALVGGSGSGKSTVI-SLIERFYEP-------LSGEILLDGNNIK 449
AI L I G++ AL+G +G+GKST++ +L ++G++ L+G +
Sbjct: 15 AILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLA 74
Query: 450 GLDLKWLRQQIGLVNQ--EPALFATTIRENILYGK----------DDATMEEITRAAKLS 497
+D L + ++ Q +PA FA + RE +L G+ E +A L+
Sbjct: 75 AIDAPRLARLRAVLPQAAQPA-FAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALA 133
Query: 498 EAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVK---------NPSILLLDEAT 548
A VG LSGG+ R+ +R + + P LLLDE T
Sbjct: 134 GA-----------TALVGRDVTTLSGGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPT 182
Query: 549 SALDAESENSVQEALDRVM----VGRTTVVVAHRLSTIRNADVIAVVQGRKIVKTGS 601
+ALD ++ + + + R+ +G +V L+ R+AD IA++ IV G+
Sbjct: 183 AALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPNLAA-RHADRIAMLADGAIVAHGA 238
|
Length = 272 |
| >gnl|CDD|215558 PLN03073, PLN03073, ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Score = 59.9 bits (145), Expect = 5e-09
Identities = 52/191 (27%), Positives = 75/191 (39%), Gaps = 60/191 (31%)
Query: 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEI 441
I F D SF YP P +F I +A+VG +G GKST++ LI +P SG +
Sbjct: 509 ISFSDASFGYPGGP--LLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTV 566
Query: 442 ---------LLDGNNIKGLDLKWLRQQIGLVNQEPALFATTIRENILYGKDDATMEEITR 492
+ +++ GLDL + P L+
Sbjct: 567 FRSAKVRMAVFSQHHVDGLDL----------SSNPLLY---------------------- 594
Query: 493 AAKLSEAMSFISNLPE-RFETQVGERGIQ----------LSGGQKQRIAISRAIVKNPSI 541
M +PE + +G G+ LSGGQK R+A ++ K P I
Sbjct: 595 ------MMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHI 648
Query: 542 LLLDEATSALD 552
LLLDE ++ LD
Sbjct: 649 LLLDEPSNHLD 659
|
Length = 718 |
| >gnl|CDD|213213 cd03246, ABCC_Protease_Secretion, ATP-binding cassette domain of PrtD, subfamily C | Back alignment and domain information |
|---|
Score = 56.1 bits (136), Expect = 7e-09
Identities = 23/59 (38%), Positives = 37/59 (62%), Gaps = 1/59 (1%)
Query: 1018 IELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGK 1076
+E+ V F YP V+ ++ + + G+S+A++G SGSGKST+ LIL PT+G+
Sbjct: 1 LEVENVSFRYPGAEPPVL-RNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGR 58
|
This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA. Length = 173 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 59.1 bits (144), Expect = 7e-09
Identities = 23/86 (26%), Positives = 39/86 (45%), Gaps = 8/86 (9%)
Query: 999 RKTQVIGDIGEELTNVEGTIELRGVHFSYPSRP--------EVVIFKDFNLKVRAGKSMA 1050
++I E + +R + Y SR EV D + +R G+++
Sbjct: 262 GDEKIIRLPRRGPLRAEPLLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGETLG 321
Query: 1051 LVGQSGSGKSTVLSLILRFYDPTAGK 1076
LVG+SGSGKST+ ++ P++G
Sbjct: 322 LVGESGSGKSTLARILAGLLPPSSGS 347
|
Length = 539 |
| >gnl|CDD|213219 cd03252, ABCC_Hemolysin, ATP-binding cassette domain of hemolysin B, subfamily C | Back alignment and domain information |
|---|
Score = 57.1 bits (138), Expect = 8e-09
Identities = 24/60 (40%), Positives = 37/60 (61%), Gaps = 3/60 (5%)
Query: 1018 IELRGVHFSY-PSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGK 1076
I V F Y P P ++ + +L+++ G+ + +VG+SGSGKST+ LI RFY P G+
Sbjct: 1 ITFEHVRFRYKPDGPVIL--DNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGR 58
|
The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. Length = 237 |
| >gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Score = 59.2 bits (144), Expect = 8e-09
Identities = 59/217 (27%), Positives = 101/217 (46%), Gaps = 48/217 (22%)
Query: 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEI 441
IE +++S + + + D +P G IV ++G +G+GKST+ +I +P SG I
Sbjct: 323 IEAENLSKGFGDKL---LIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTI 379
Query: 442 LLDGNNIKGLDLKWLRQQIGLVNQE-PALFAT-TIRENILYGKDDATM--EEITRAAKLS 497
+ G +K + V+Q AL T+ E I G D + E+ A +
Sbjct: 380 KI-GETVK----------LAYVDQSRDALDPNKTVWEEISGGLDIIQLGKREVPSRAYVG 428
Query: 498 EAMSFISNLPERF-------ETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSA 550
RF + +VG QLSGG++ R+ +++ + ++LLLDE T+
Sbjct: 429 -----------RFNFKGSDQQKKVG----QLSGGERNRVHLAKTLKSGGNVLLLDEPTND 473
Query: 551 LDAESENSVQEALDRVMVGRTTVVVAH------RLST 581
LD E+ +++EAL VV++H R++T
Sbjct: 474 LDVETLRALEEALLE--FAGCAVVISHDRWFLDRIAT 508
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. Length = 552 |
| >gnl|CDD|227590 COG5265, ATM1, ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 58.9 bits (143), Expect = 9e-09
Identities = 24/61 (39%), Positives = 36/61 (59%), Gaps = 2/61 (3%)
Query: 1016 GTIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAG 1075
G + V F+Y P I + + GK++A+VG+SG+GKST+L L+ RFYD +G
Sbjct: 261 GAVAFINVSFAY--DPRRPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSG 318
Query: 1076 K 1076
Sbjct: 319 S 319
|
Length = 497 |
| >gnl|CDD|226361 COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 57.7 bits (140), Expect = 1e-08
Identities = 19/59 (32%), Positives = 34/59 (57%), Gaps = 3/59 (5%)
Query: 1018 IELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGK 1076
+E+R V S+ D +L ++ G+ + L+G SG GK+T+L +I F P++G+
Sbjct: 6 LEIRNVSKSFGD---FTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGE 61
|
Length = 352 |
| >gnl|CDD|224045 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 57.2 bits (139), Expect = 1e-08
Identities = 17/59 (28%), Positives = 31/59 (52%), Gaps = 3/59 (5%)
Query: 1018 IELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGK 1076
+E+ + F Y +P I D + + G+ ++G +GSGKST+L + P +G+
Sbjct: 3 LEVENLSFGYGGKP---ILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGE 58
|
Length = 258 |
| >gnl|CDD|226359 COG3839, MalK, ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 57.7 bits (140), Expect = 1e-08
Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 3/59 (5%)
Query: 1017 TIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAG 1075
+EL+ V S+ S + KD NL + G+ + L+G SG GKST+L +I +PT+G
Sbjct: 3 ELELKNVRKSFGS---FEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSG 58
|
Length = 338 |
| >gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins | Back alignment and domain information |
|---|
Score = 55.5 bits (135), Expect = 1e-08
Identities = 16/58 (27%), Positives = 32/58 (55%), Gaps = 3/58 (5%)
Query: 1019 ELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGK 1076
E+ + Y R + D +L + AG+ + ++G +G+GKST+L + P++G+
Sbjct: 1 EVENLSVGYGGR---TVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGE 55
|
ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. Length = 180 |
| >gnl|CDD|224049 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 56.9 bits (138), Expect = 1e-08
Identities = 16/61 (26%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Query: 1017 TIELRGVHFSYPSRPEVV-IFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAG 1075
+ +R + Y + +L++ G+++ +VG+SGSGKST+ L+ P++G
Sbjct: 3 LLSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSG 62
Query: 1076 K 1076
Sbjct: 63 S 63
|
Length = 252 |
| >gnl|CDD|226967 COG4608, AppF, ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 56.8 bits (138), Expect = 1e-08
Identities = 19/65 (29%), Positives = 35/65 (53%), Gaps = 6/65 (9%)
Query: 1018 IELRGVHFSYPSR------PEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYD 1071
+E++ + +P V + ++ G+++ LVG+SG GKST+ LIL +
Sbjct: 5 LEVKNLKKYFPVGKGFGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEE 64
Query: 1072 PTAGK 1076
PT+G+
Sbjct: 65 PTSGE 69
|
Length = 268 |
| >gnl|CDD|233206 TIGR00954, 3a01203, Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei | Back alignment and domain information |
|---|
Score = 58.6 bits (142), Expect = 1e-08
Identities = 57/217 (26%), Positives = 99/217 (45%), Gaps = 40/217 (18%)
Query: 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEI 441
I+F+++ P+ DV I + ++P+G + + G +G GKS++ ++ + P+ G
Sbjct: 452 IKFENIPLVTPNG-DVLI-ESLSFEVPSGNNLLICGPNGCGKSSLFRILGELW-PVYG-- 506
Query: 442 LLDGNNIKGLDLKWLRQQIGLVNQEPALFATTIRENILY----------GKDDATMEEIT 491
G K + ++ V Q P + T+R+ I+Y G D +E+I
Sbjct: 507 --------GRLTKPAKGKLFYVPQRPYMTLGTLRDQIIYPDSSEDMKRRGLSDKDLEQIL 558
Query: 492 RAAKLSEAMSFISNLPERFETQVGERGIQ-----LSGGQKQRIAISRAIVKNPSILLLDE 546
+L+ ++ ER + G +Q LSGG+KQRIA++R P +LDE
Sbjct: 559 DNVQLT-------HILER---EGGWSAVQDWMDVLSGGEKQRIAMARLFYHKPQFAILDE 608
Query: 547 ATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIR 583
TSA+ + E + G T V+HR S +
Sbjct: 609 CTSAVSVDVEGYMYRLCRE--FGITLFSVSHRKSLWK 643
|
[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 659 |
| >gnl|CDD|182732 PRK10789, PRK10789, putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Score = 58.2 bits (141), Expect = 2e-08
Identities = 60/255 (23%), Positives = 117/255 (45%), Gaps = 34/255 (13%)
Query: 838 LNWRITLVVVATYPLIISGHISEKLFFQGYGGNLSK-------AYLKANMLAAEAVSNIR 890
++W++TL+ + P++ + + YG L + A+ N E++++IR
Sbjct: 135 ISWQLTLLALLPMPVM-------AIMIKRYGDQLHERFKLAQAAFSSLNDRTQESLTSIR 187
Query: 891 TVAAFCSEDKVLELYSRELVEPSKRSFIRGQIAGIF-------YGISQFFIFSSYGLALW 943
+ AF ED+ L++ + + K++ +I F G++ +
Sbjct: 188 MIKAFGLEDRQSALFAADAEDTGKKNMRVARIDARFDPTIYIAIGMANLLAIGGGSWMVV 247
Query: 944 YGSVLMGKELASFKSVMKSFMVLIVTALAMGETLALVPDLLKGNQMAASVFEVLDRKTQV 1003
GS+ +G +L SF VM ++I LA LA + ++++ A S + + V
Sbjct: 248 NGSLTLG-QLTSF--VM-YLGLMIWPMLA----LAWMFNIVERGSAAYSRIRAMLAEAPV 299
Query: 1004 IGDIGEELTNVEGTIELRGVHFSYP--SRPEVVIFKDFNLKVRAGKSMALVGQSGSGKST 1061
+ D E + G +++ F+YP P ++ N ++ G+ + + G +GSGKST
Sbjct: 300 VKDGSEPVPEGRGELDVNIRQFTYPQTDHP---ALENVNFTLKPGQMLGICGPTGSGKST 356
Query: 1062 VLSLILRFYDPTAGK 1076
+LSLI R +D + G
Sbjct: 357 LLSLIQRHFDVSEGD 371
|
Length = 569 |
| >gnl|CDD|213226 cd03259, ABC_Carb_Solutes_like, ATP-binding cassette domain of the carbohydrate and solute transporters-like | Back alignment and domain information |
|---|
Score = 55.2 bits (134), Expect = 2e-08
Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 3/59 (5%)
Query: 1018 IELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGK 1076
+EL+G+ +Y S V D +L V G+ +AL+G SG GK+T+L LI P +G+
Sbjct: 1 LELKGLSKTYGS---VRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGE 56
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 213 |
| >gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Score = 57.7 bits (140), Expect = 2e-08
Identities = 55/199 (27%), Positives = 91/199 (45%), Gaps = 41/199 (20%)
Query: 406 DIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIGLVNQ 465
+I G+++ ++G +G GK+T + L L+G I D + + L + + Q I
Sbjct: 363 EIYDGEVIGILGPNGIGKTTFVKL-------LAGVIKPDEGSEEDLKVSYKPQYI----- 410
Query: 466 EPALFATTIRENILYGKDDATMEEITRAAKLSEAMS--FIS------NLPERFETQVGER 517
P D T+E++ R+A S S F + NL + E V E
Sbjct: 411 SP--------------DYDGTVEDLLRSAIRSAFGSSYFKTEIVKPLNLEDLLERPVDE- 455
Query: 518 GIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGR--TTVVV 575
LSGG+ QR+AI+ A+ + + LLDE ++ LD E V + + R + T +VV
Sbjct: 456 ---LSGGELQRVAIAAALSREADLYLLDEPSAYLDVEQRIIVAKVIRRFIENNEKTALVV 512
Query: 576 AHRLSTIRN-ADVIAVVQG 593
H + I +D + V +G
Sbjct: 513 DHDIYMIDYVSDRLIVFEG 531
|
Length = 591 |
| >gnl|CDD|213211 cd03244, ABCC_MRP_domain2, ATP-binding cassette domain 2 of multidrug resistance-associated protein | Back alignment and domain information |
|---|
Score = 55.2 bits (134), Expect = 3e-08
Identities = 18/61 (29%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Query: 1016 GTIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAG 1075
G IE + V Y V+ K+ + ++ G+ + +VG++GSGKS++L + R + ++G
Sbjct: 1 GDIEFKNVSLRYRPNLPPVL-KNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSG 59
Query: 1076 K 1076
Sbjct: 60 S 60
|
The ABC subfamily C is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 221 |
| >gnl|CDD|181965 PRK09580, sufC, cysteine desulfurase ATPase component; Reviewed | Back alignment and domain information |
|---|
Score = 55.6 bits (134), Expect = 3e-08
Identities = 58/228 (25%), Positives = 103/228 (45%), Gaps = 25/228 (10%)
Query: 393 SRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLI--ERFYEPLSGEILLDGNNIKG 450
S D AI L++ G++ A++G +GSGKST+ + + YE G + G ++
Sbjct: 10 SVEDKAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLE 69
Query: 451 LD------------LKWLRQQIGLVNQEPALFATTIRENILYGKDDATMEEITRAAKLSE 498
L ++ + G+ NQ F T + + ++ + E
Sbjct: 70 LSPEDRAGEGIFMAFQYPVEIPGVSNQ---FFLQTALNAVRSYRGQEPLDRFDFQDLMEE 126
Query: 499 AMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENS 558
++ + +PE T+ G SGG+K+R I + V P + +LDE+ S LD ++
Sbjct: 127 KIALL-KMPEDLLTRSVNVG--FSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKI 183
Query: 559 VQEALDRVMVG-RTTVVVAHR---LSTIRNADVIAVVQGRKIVKTGSH 602
V + ++ + G R+ ++V H L I+ V + QGR IVK+G
Sbjct: 184 VADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGR-IVKSGDF 230
|
Length = 248 |
| >gnl|CDD|234357 TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 56.9 bits (138), Expect = 4e-08
Identities = 51/202 (25%), Positives = 89/202 (44%), Gaps = 27/202 (13%)
Query: 886 VSNIRTVAAFCSEDKVLELYSRELVEPSKRSFIRGQIAGIFY-----GISQFFIFSSYGL 940
+S +R A E++ +++ ++ + Q + + +
Sbjct: 324 ISKLRVAGA---ENRAFARWAKLFSR-QRKLELSAQRIENLLTVFNAVLPVLTSAALFAA 379
Query: 941 ALW-YGSVLMGKELASFKSVMKSFMVLI--VTALAMG--ETLALVPDLLKGNQMAASVFE 995
A+ G + L SF + +F VT L+ LA++P + + ++ E
Sbjct: 380 AISLLGGAGLS--LGSFLAFNTAFGSFSGAVTQLSNTLISILAVIPLWERAKPILEALPE 437
Query: 996 VLDRKTQVIGDIGEELTNVEGTIELRGVHFSY-PSRPEVVIFKDFNLKVRAGKSMALVGQ 1054
V + KT D G+ + G IE+ V F Y P P +I D +L++ G+ +A+VG
Sbjct: 438 VDEAKT----DPGK----LSGAIEVDRVTFRYRPDGP--LILDDVSLQIEPGEFVAIVGP 487
Query: 1055 SGSGKSTVLSLILRFYDPTAGK 1076
SGSGKST+L L+L F P +G
Sbjct: 488 SGSGKSTLLRLLLGFETPESGS 509
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal leader sequence cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, members of protein families related to nitrile hydratase alpha subunit or to nif11 have undergone paralogous family expansions, with members possessing a putative bacteriocin cleavage region ending with a classic Gly-Gly motif. Those sets of putative bacteriocins, members of this protein family and its partners TIGR03794 and TIGR03796, and cyclodehydratase/docking scaffold fusion proteins of thiazole/oxazole biosynthesis frequently show correlated species distribution and co-clustering within many of those genomes [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 686 |
| >gnl|CDD|213188 cd03221, ABCF_EF-3, ATP-binding cassette domain of elongation factor 3, subfamily F | Back alignment and domain information |
|---|
Score = 52.8 bits (128), Expect = 4e-08
Identities = 21/59 (35%), Positives = 33/59 (55%), Gaps = 3/59 (5%)
Query: 1018 IELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGK 1076
IEL + +Y + + KD +L + G + LVG++G+GKST+L LI +P G
Sbjct: 1 IELENLSKTYGGKL---LLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGI 56
|
Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. Length = 144 |
| >gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Score = 57.1 bits (138), Expect = 5e-08
Identities = 71/353 (20%), Positives = 144/353 (40%), Gaps = 38/353 (10%)
Query: 740 ITILFCCAAVITVIVHAIEHLSFGIMGERLTLRVREKMFSAILSNEIGWFD-----EMDN 794
I+I A +I I+ I+ ++G+RL++ + + + +F E+ +
Sbjct: 198 ISIGLIIAYIIQQILSYIQIFLLNVLGQRLSIDIILSYIKHLFELPMSFFSTRRTGEIVS 257
Query: 795 SSSILASRLESDATLLRTIVVDRSTILIQNFGLVTASFVIAF--ILNWRITLVVVATYPL 852
+ +S +++ A+ + ++ +D LV + +L + ++L+ + Y +
Sbjct: 258 RFTDASSIIDALASTILSLFLDMWI-------LVIVGLFLVRQNMLLFLLSLLSIPVYAV 310
Query: 853 IISGHISEKLFFQGYGGNLSKAYLKANMLAA---EAVSNIRTVAAFCSEDKVLELYSREL 909
II LF + + A +L + E ++ I T+ + SE + E
Sbjct: 311 III------LFKRTFNKLNHDAMQANAVLNSSIIEDLNGIETIKSLTSEAERYSKIDSEF 364
Query: 910 VEPSKRSFIRGQIAGIFYGISQFFIFSSYGLALWYGS--VLMGK----ELASFKSVMKSF 963
+ +SF + I + LW G+ V+ GK +L +F +++ F
Sbjct: 365 GDYLNKSFKYQKADQGQQAIKAVTKLILNVVILWTGAYLVMRGKLTLGQLITFNALLSYF 424
Query: 964 MVLIVTALAMGETLALVPDLLKGNQMAASVFEVLDRKTQVI-GDIGEELTNVEGTIELRG 1022
+ + + L P L + EV ++ I EL N+ G I +
Sbjct: 425 LT------PLENIINLQPKLQAARVANNRLNEVYLVDSEFINKKKRTELNNLNGDIVIND 478
Query: 1023 VHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAG 1075
V +SY ++ D +L ++ +VG SGSGKST+ L++ F+ +G
Sbjct: 479 VSYSYGYGSNIL--SDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSG 529
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair, Transport and binding proteins, Other]. Length = 708 |
| >gnl|CDD|224047 COG1122, CbiO, ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 55.0 bits (133), Expect = 5e-08
Identities = 22/59 (37%), Positives = 34/59 (57%), Gaps = 2/59 (3%)
Query: 1018 IELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGK 1076
IE + F YP KD +L++ G+ + L+G +GSGKST+L L+ PT+G+
Sbjct: 4 IEAENLSFRYP--GRKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGE 60
|
Length = 235 |
| >gnl|CDD|188353 TIGR03608, L_ocin_972_ABC, putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Score = 53.8 bits (130), Expect = 7e-08
Identities = 19/43 (44%), Positives = 28/43 (65%)
Query: 1034 VIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGK 1076
VI D NL + GK A++G+SGSGKST+L++I +G+
Sbjct: 12 VILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQ 54
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins [Cellular processes, Toxin production and resistance, Transport and binding proteins, Unknown substrate]. Length = 206 |
| >gnl|CDD|181888 PRK09473, oppD, oligopeptide transporter ATP-binding component; Provisional | Back alignment and domain information |
|---|
Score = 55.1 bits (133), Expect = 8e-08
Identities = 56/191 (29%), Positives = 86/191 (45%), Gaps = 40/191 (20%)
Query: 386 DVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKS-TVISLIERFYEP--LSGEIL 442
V+F P DV + + AG+ + +VG SGSGKS T +L+ + G
Sbjct: 19 RVTFSTPD-GDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSAT 77
Query: 443 LDGNNIKGL---DLKWLR-QQIGLVNQEPALFATT------IRENIL--------YGKDD 484
+G I L +L LR +QI ++ Q+P T+ + E ++ K +
Sbjct: 78 FNGREILNLPEKELNKLRAEQISMIFQDPM---TSLNPYMRVGEQLMEVLMLHKGMSKAE 134
Query: 485 ATMEEITR---AAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSI 541
A EE R A K+ EA + P F SGG +QR+ I+ A++ P +
Sbjct: 135 A-FEESVRMLDAVKMPEARKRMKMYPHEF-----------SGGMRQRVMIAMALLCRPKL 182
Query: 542 LLLDEATSALD 552
L+ DE T+ALD
Sbjct: 183 LIADEPTTALD 193
|
Length = 330 |
| >gnl|CDD|224050 COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 54.2 bits (131), Expect = 1e-07
Identities = 22/59 (37%), Positives = 33/59 (55%), Gaps = 3/59 (5%)
Query: 1018 IELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGK 1076
IE V Y ++ D NL + G+ + L+G SGSGK+T L +I R +PT+G+
Sbjct: 2 IEFENVSKRYGNKK---AVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGE 57
|
Length = 309 |
| >gnl|CDD|213188 cd03221, ABCF_EF-3, ATP-binding cassette domain of elongation factor 3, subfamily F | Back alignment and domain information |
|---|
Score = 51.7 bits (125), Expect = 1e-07
Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 3/65 (4%)
Query: 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEI 441
IE +++S Y + + L I G + LVG +G+GKST++ LI EP G +
Sbjct: 1 IELENLSKTYGGKL---LLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIV 57
Query: 442 LLDGN 446
Sbjct: 58 TWGST 62
|
Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. Length = 144 |
| >gnl|CDD|213200 cd03233, ABCG_PDR_domain1, First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 52.7 bits (127), Expect = 1e-07
Identities = 44/169 (26%), Positives = 76/169 (44%), Gaps = 39/169 (23%)
Query: 409 AGKIVALVGGSGSGKST---VISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIGLVNQ 465
G++V ++G GSG ST ++ + G+I +G K K+ + I V++
Sbjct: 32 PGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFAEKYPGEII-YVSE 90
Query: 466 EPALFAT-TIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGG 524
E F T T+RE T++ A + + F+ RGI SGG
Sbjct: 91 EDVHFPTLTVRE---------TLD---FALRC-KGNEFV-------------RGI--SGG 122
Query: 525 QKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTV 573
+++R++I+ A+V S+L D +T LD+ + AL+ + RT
Sbjct: 123 ERKRVSIAEALVSRASVLCWDNSTRGLDSST------ALEILKCIRTMA 165
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 202 |
| >gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Score = 55.5 bits (134), Expect = 1e-07
Identities = 52/186 (27%), Positives = 96/186 (51%), Gaps = 22/186 (11%)
Query: 410 GKIVALVGGSGSGKSTVIS-LIERFYEPLSGEILLDGN---NIKGLDLKWLRQQIGLVNQ 465
G + AL+G SG+GK+T+++ L ER ++ ++ G+ N + LD + R IG V Q
Sbjct: 789 GTLTALMGASGAGKTTLLNVLAER----VTTGVITGGDRLVNGRPLDSSFQR-SIGYVQQ 843
Query: 466 EPALFAT-TIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQ------VGERG 518
+ T T+RE++ + + +++ SE M ++ + + E + VG G
Sbjct: 844 QDLHLPTSTVRESLRFSAYLRQPKSVSK----SEKMEYVEEVIKLLEMESYADAVVGVPG 899
Query: 519 IQLSGGQKQRIAISRAIVKNPSILL-LDEATSALDAESENSVQEALDR-VMVGRTTVVVA 576
L+ Q++R+ I +V P +LL LDE TS LD+++ S+ + + + G+ +
Sbjct: 900 EGLNVEQRKRLTIGVELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLADHGQAILCTI 959
Query: 577 HRLSTI 582
H+ S I
Sbjct: 960 HQPSAI 965
|
[Transport and binding proteins, Other]. Length = 1394 |
| >gnl|CDD|213187 cd03220, ABC_KpsT_Wzt, ATP-binding cassette component of polysaccharide transport system | Back alignment and domain information |
|---|
Score = 52.9 bits (128), Expect = 2e-07
Identities = 18/57 (31%), Positives = 30/57 (52%)
Query: 1020 LRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGK 1076
G+ E KD + +V G+ + L+G++G+GKST+L L+ Y P +G
Sbjct: 22 KLGILGRKGEVGEFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGT 78
|
The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2. Length = 224 |
| >gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Score = 54.7 bits (132), Expect = 2e-07
Identities = 49/226 (21%), Positives = 89/226 (39%), Gaps = 59/226 (26%)
Query: 364 MSKASSKTGRKLDKLSGHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGK 423
+A+ ++ L+G F+++S ++ AG+I+ L G G+G+
Sbjct: 260 RQQAAGAPVLTVEDLTGE-GFRNISL----------------EVRAGEILGLAGVVGAGR 302
Query: 424 STVISLIERFY---EPLSGEILLDGNNIKGLDLKWLRQQIGLV-----NQEPALF----- 470
+ L E Y G I+L+G I L R GLV Q L+
Sbjct: 303 T---ELAETLYGLRPARGGRIMLNGKEINALSTA-QRLARGLVYLPEDRQSSGLYLDAPL 358
Query: 471 -----ATTIRENILY---GKDDATMEEITRA--AKLSEAMSFISNLPERFETQVGERGIQ 520
A T + +++A +E RA K + A R
Sbjct: 359 AWNVCALTHNRRGFWIKPARENAVLERYRRALNIKFNHA-----EQAAR----------T 403
Query: 521 LSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRV 566
LSGG +Q++ I++ + +P +L++DE T +D + N + + + +
Sbjct: 404 LSGGNQQKVLIAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSI 449
|
Length = 510 |
| >gnl|CDD|224054 COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 53.1 bits (128), Expect = 3e-07
Identities = 16/61 (26%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
Query: 1017 TIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGK 1076
IE+R + Y + + +V G+ L+G +G+GK+T+L ++ PT+G+
Sbjct: 4 VIEVRNLTKKY--GGDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGE 61
Query: 1077 A 1077
Sbjct: 62 I 62
|
Length = 293 |
| >gnl|CDD|213223 cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the binding protein-dependent phosphonate transport system | Back alignment and domain information |
|---|
Score = 52.2 bits (126), Expect = 3e-07
Identities = 21/59 (35%), Positives = 35/59 (59%), Gaps = 2/59 (3%)
Query: 1018 IELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGK 1076
IE+ + +YP+ KD +L + G+ +AL+G SG+GKST+L + +PT+G
Sbjct: 1 IEVENLSKTYPN--GKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGS 57
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 241 |
| >gnl|CDD|224057 COG1134, TagH, ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 52.6 bits (127), Expect = 3e-07
Identities = 20/60 (33%), Positives = 33/60 (55%)
Query: 1018 IELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKA 1077
L+G+ E KD + ++ G+ + ++G +G+GKST+L LI Y PT+GK
Sbjct: 25 KRLKGLAKGGRKVAEFWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKV 84
|
Length = 249 |
| >gnl|CDD|213189 cd03222, ABC_RNaseL_inhibitor, ATP-binding cassette domain of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 51.4 bits (123), Expect = 3e-07
Identities = 28/78 (35%), Positives = 46/78 (58%), Gaps = 3/78 (3%)
Query: 519 IQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMV--GRTTVVVA 576
I LSGG+ QR+AI+ A+++N + L DE ++ LD E + A+ R+ +T +VV
Sbjct: 70 IDLSGGELQRVAIAAALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVE 129
Query: 577 HRLSTIRN-ADVIAVVQG 593
H L+ + +D I V +G
Sbjct: 130 HDLAVLDYLSDRIHVFEG 147
|
The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 177 |
| >gnl|CDD|215599 PLN03140, PLN03140, ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Score = 54.1 bits (130), Expect = 4e-07
Identities = 38/116 (32%), Positives = 60/116 (51%), Gaps = 12/116 (10%)
Query: 473 TIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQ------VGERGIQ-LSGGQ 525
T+RE+++Y +E+++ E M F+ + E E VG G+ LS Q
Sbjct: 969 TVRESLIYSAFLRLPKEVSK----EEKMMFVDEVMELVELDNLKDAIVGLPGVTGLSTEQ 1024
Query: 526 KQRIAISRAIVKNPSILLLDEATSALDAESENSVQEAL-DRVMVGRTTVVVAHRLS 580
++R+ I+ +V NPSI+ +DE TS LDA + V + + V GRT V H+ S
Sbjct: 1025 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPS 1080
|
Length = 1470 |
| >gnl|CDD|213203 cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-binding cassette domain 1 of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 52.0 bits (125), Expect = 4e-07
Identities = 53/218 (24%), Positives = 94/218 (43%), Gaps = 42/218 (19%)
Query: 400 FDKFCLDIPA-GKIVALVGGSGSGKSTVISLIE--------RFYEPLSGEILLD---GN- 446
F L +P G+++ LVG +G GKST + ++ +F +P + +LD G+
Sbjct: 15 FKLHRLPVPREGQVLGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWDEILDEFRGSE 74
Query: 447 ------NIKGLDLKWLRQ-QIGLVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEA 499
+ D+K + + Q V+ P + E +L KD+ +
Sbjct: 75 LQNYFTKLLEGDVKVIVKPQ--YVDLIPKAVKGKVGE-LLKKKDERGKLDE--------- 122
Query: 500 MSFISNLPERFE-TQVGERGI-QLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESEN 557
L ++ E V +R I QLSGG+ QR+AI+ A+ ++ DE +S LD +
Sbjct: 123 ------LVDQLELRHVLDRNIDQLSGGELQRVAIAAALARDADFYFFDEPSSYLDIKQRL 176
Query: 558 SVQEAL-DRVMVGRTTVVVAHRLSTIRN-ADVIAVVQG 593
+ + + +VV H L+ + +D I + G
Sbjct: 177 NAARLIRELAEDDNYVLVVEHDLAVLDYLSDYIHCLYG 214
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 255 |
| >gnl|CDD|226164 COG3638, COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 51.9 bits (125), Expect = 5e-07
Identities = 22/58 (37%), Positives = 36/58 (62%), Gaps = 2/58 (3%)
Query: 1018 IELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAG 1075
IE++ + +YP KD NL++ G+ +A++G SG+GKST+L + DPT+G
Sbjct: 4 IEVKNLSKTYPGG--HQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSG 59
|
Length = 258 |
| >gnl|CDD|236523 PRK09452, potA, putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Score = 53.0 bits (128), Expect = 5e-07
Identities = 21/58 (36%), Positives = 34/58 (58%), Gaps = 3/58 (5%)
Query: 1018 IELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAG 1075
+ELRG+ S+ + + + +L + G+ + L+G SG GK+TVL LI F P +G
Sbjct: 15 VELRGISKSFDGKE---VISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSG 69
|
Length = 375 |
| >gnl|CDD|213268 cd03301, ABC_MalK_N, The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Score = 51.1 bits (123), Expect = 6e-07
Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 3/59 (5%)
Query: 1018 IELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGK 1076
+EL V + V D NL + G+ + L+G SG GK+T L +I +PT+G+
Sbjct: 1 VELENVTKRFG---NVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGR 56
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. Length = 213 |
| >gnl|CDD|213183 cd03216, ABC_Carb_Monos_I, First domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 50.1 bits (121), Expect = 6e-07
Identities = 20/59 (33%), Positives = 35/59 (59%), Gaps = 3/59 (5%)
Query: 1018 IELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGK 1076
+ELRG+ + V +L VR G+ AL+G++G+GKST++ ++ Y P +G+
Sbjct: 1 LELRGITKRFGG---VKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGE 56
|
This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 163 |
| >gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Score = 53.1 bits (128), Expect = 6e-07
Identities = 52/226 (23%), Positives = 93/226 (41%), Gaps = 58/226 (25%)
Query: 400 FDKFCLDIP-AGKIVALVGGSGSGKSTVISLIERFYEPLSGEI---LLDGNNIKGLD--L 453
F + L P GK+V ++G +G GKST + + L+GE+ L + D +
Sbjct: 89 FKLYRLPTPRPGKVVGILGPNGIGKSTALKI-------LAGELKPNLGRYEDPPSWDEVI 141
Query: 454 KWLR-------------------QQIGLVNQEPALFATTIRENILYGKDDATMEEITRAA 494
K R + V+ P + + E +L D+
Sbjct: 142 KRFRGTELQNYFKKLYEGELRAVHKPQYVDLIPKVVKGKVGE-LLKKVDER--------G 192
Query: 495 KLSEAMSFISNLPERFE-TQVGERGI-QLSGGQKQRIAISRAIVKNPSILLLDEATSALD 552
K E + ER V +R + +LSGG+ QR+AI+ A++++ + DE +S LD
Sbjct: 193 KFDEVV-------ERLGLENVLDRDVSELSGGELQRVAIAAALLRDADVYFFDEPSSYLD 245
Query: 553 AESE----NSVQEALDRVMVGRTTVVVAHRLSTIRN-ADVIAVVQG 593
++E + G+ +VV H L+ + +D + ++ G
Sbjct: 246 IRQRLNAARVIRELAED---GKYVIVVEHDLAVLDYLSDFVHILYG 288
|
Length = 591 |
| >gnl|CDD|223256 COG0178, UvrA, Excinuclease ATPase subunit [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Score = 53.4 bits (129), Expect = 6e-07
Identities = 32/101 (31%), Positives = 51/101 (50%), Gaps = 10/101 (9%)
Query: 521 LSGGQKQRIAISRAIVK---NPSILLLDEATSALDAESENSVQEALDR-VMVGRTTVVVA 576
LSGG+ QR+ +++ + K ++ +LDE T+ L + + E L R V G T +V+
Sbjct: 823 LSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFDDIKKLLEVLHRLVDKGNTVIVIE 882
Query: 577 HRLSTIRNADVI------AVVQGRKIVKTGSHEELISNPNS 611
H L I+ AD I G +IV +G+ EE+ S
Sbjct: 883 HNLDVIKTADWIIDLGPEGGDGGGEIVASGTPEEVAKVKAS 923
|
Length = 935 |
| >gnl|CDD|236861 PRK11147, PRK11147, ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Score = 53.0 bits (128), Expect = 6e-07
Identities = 62/186 (33%), Positives = 87/186 (46%), Gaps = 35/186 (18%)
Query: 396 DVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLD-GNNIKGLDLK 454
D + D L I + V LVG +G+GKST++ + L+GE+LLD G I DL
Sbjct: 15 DAPLLDNAELHIEDNERVCLVGRNGAGKSTLMKI-------LNGEVLLDDGRIIYEQDLI 67
Query: 455 WLR-QQIGLVNQEPALF---ATTIRENILYGKD----------DATMEEITRAAKLSEAM 500
R QQ N E ++ A I E Y K D + + + AKL E +
Sbjct: 68 VARLQQDPPRNVEGTVYDFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQL 127
Query: 501 SFISNLPERFETQVGERGIQ-----------LSGGQKQRIAISRAIVKNPSILLLDEATS 549
NL + E ++ E Q LSGG ++ A+ RA+V NP +LLLDE T+
Sbjct: 128 D-HHNL-WQLENRINEVLAQLGLDPDAALSSLSGGWLRKAALGRALVSNPDVLLLDEPTN 185
Query: 550 ALDAES 555
LD E+
Sbjct: 186 HLDIET 191
|
Length = 635 |
| >gnl|CDD|223488 COG0411, LivG, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 51.4 bits (124), Expect = 7e-07
Identities = 17/44 (38%), Positives = 30/44 (68%)
Query: 1033 VVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGK 1076
+ D +L+VR G+ + L+G +G+GK+T+ +LI FY P++G
Sbjct: 17 LTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGT 60
|
Length = 250 |
| >gnl|CDD|224044 COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 51.5 bits (124), Expect = 7e-07
Identities = 21/71 (29%), Positives = 36/71 (50%), Gaps = 3/71 (4%)
Query: 1007 IGEELTNVEGTIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLI 1066
+ E IEL+ V + I D + +V G+ A+VG +G+GK+T+LSL+
Sbjct: 21 KRHPIEINEPLIELKNVSVRRNGKK---ILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLL 77
Query: 1067 LRFYDPTAGKA 1077
+ P++G
Sbjct: 78 TGEHPPSSGDV 88
|
Length = 257 |
| >gnl|CDD|182880 PRK10982, PRK10982, galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 52.8 bits (127), Expect = 7e-07
Identities = 51/171 (29%), Positives = 75/171 (43%), Gaps = 24/171 (14%)
Query: 393 SRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLD 452
S P V D L + I AL+G +G+GKST++ + Y+ SG IL G I
Sbjct: 7 SFPGVKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKS 66
Query: 453 LK-WLRQQIGLVNQEPALF-ATTIRENILYGK--------DDATMEEITRA--AKLSEAM 500
K L I +V+QE L ++ +N+ G+ D M T+A +L
Sbjct: 67 SKEALENGISMVHQELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELD--- 123
Query: 501 SFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSAL 551
I P + LS Q Q I I++A N I+++DE TS+L
Sbjct: 124 --IDIDPR-------AKVATLSVSQMQMIEIAKAFSYNAKIVIMDEPTSSL 165
|
Length = 491 |
| >gnl|CDD|213227 cd03260, ABC_PstB_phosphate_transporter, ATP-binding cassette domain of the phosphate transport system | Back alignment and domain information |
|---|
Score = 51.0 bits (123), Expect = 8e-07
Identities = 24/64 (37%), Positives = 34/64 (53%), Gaps = 8/64 (12%)
Query: 1018 IELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYD-----P 1072
IELR ++ Y + KD +L + G+ AL+G SG GKST+L L+ R D P
Sbjct: 1 IELRDLNVYYGDK---HALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAP 57
Query: 1073 TAGK 1076
G+
Sbjct: 58 DEGE 61
|
Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). Length = 227 |
| >gnl|CDD|226905 COG4525, TauB, ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 50.9 bits (122), Expect = 1e-06
Identities = 18/61 (29%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
Query: 1017 TIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGK 1076
+ + + SY +P +D +L + +G+ + ++G SG GK+T+L+LI F P+ G
Sbjct: 3 MLNVSHLSLSYEGKP-RSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGS 61
Query: 1077 A 1077
Sbjct: 62 I 62
|
Length = 259 |
| >gnl|CDD|182528 PRK10535, PRK10535, macrolide transporter ATP-binding /permease protein; Provisional | Back alignment and domain information |
|---|
Score = 52.4 bits (126), Expect = 1e-06
Identities = 28/60 (46%), Positives = 41/60 (68%), Gaps = 3/60 (5%)
Query: 1018 IELRGVHFSYPSRPE-VVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYD-PTAG 1075
+EL+ + SYPS E V + K +L + AG+ +A+VG SGSGKST+++ IL D PT+G
Sbjct: 5 LELKDIRRSYPSGEEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMN-ILGCLDKPTSG 63
|
Length = 648 |
| >gnl|CDD|226639 COG4170, SapD, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 51.4 bits (123), Expect = 1e-06
Identities = 63/280 (22%), Positives = 115/280 (41%), Gaps = 61/280 (21%)
Query: 397 VAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWL 456
V D+ + + G+I LVG SGSGKS + I + + + D +DL L
Sbjct: 20 VKAVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICGVNKD-NWRVTADRMRFDDIDLLRL 78
Query: 457 --RQQIGLVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPER-FETQ 513
R++ LV ++ I + D + E + R I N+P ++ +
Sbjct: 79 SPRERRKLVGHNVSM----IFQEPQSCLDPS--ERVGR--------QLIQNIPAWTYKGR 124
Query: 514 VGER---------------GI------------QLSGGQKQRIAISRAIVKNPSILLLDE 546
+R GI +L+ G+ Q++ I+ A+ P +L+ DE
Sbjct: 125 WWQRFGWRKRRAIELLHRVGIKDHKDIMRSYPYELTEGECQKVMIAIALANQPRLLIADE 184
Query: 547 ATSALDAESENSVQEALDRV--MVGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHE 603
T++++ ++ + L R+ T ++++H L I AD I V+ + V++ E
Sbjct: 185 PTNSMEPTTQAQIFRLLSRLNQNSNTTILLISHDLQMISQWADKINVLYCGQTVESAPSE 244
Query: 604 ELISNPNSAY-AALVQLQEAASQQSNSSQCPNMGRPLSIK 642
EL++ P+ Y AL++ P+ G L K
Sbjct: 245 ELVTMPHHPYTQALIR------------AIPDFGSALPHK 272
|
Length = 330 |
| >gnl|CDD|226969 COG4618, ArpD, ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Score = 51.5 bits (124), Expect = 2e-06
Identities = 31/135 (22%), Positives = 62/135 (45%), Gaps = 26/135 (19%)
Query: 945 GSVLMGKELASFKSVM---KSFMVLIVTALAMGETLALVPDLLKGNQMAASVFEVLDRKT 1001
GS+L G+ LA + K F+ + + E LA +P + E +
Sbjct: 281 GSILSGRALAPIDLAIANWKQFVAARQSYKRLNELLAELP----------AAAERM---- 326
Query: 1002 QVIGDIGEELTNVEGTIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKST 1061
L +G + + + + P + + ++ K + ++AG+++ ++G SGSGKST
Sbjct: 327 --------PLPAPQGALSVERLTAAPPGQKKPIL-KGISFALQAGEALGIIGPSGSGKST 377
Query: 1062 VLSLILRFYDPTAGK 1076
+ L++ + PT+G
Sbjct: 378 LARLLVGIWPPTSGS 392
|
Length = 580 |
| >gnl|CDD|213217 cd03250, ABCC_MRP_domain1, ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C | Back alignment and domain information |
|---|
Score = 49.0 bits (118), Expect = 2e-06
Identities = 20/52 (38%), Positives = 31/52 (59%), Gaps = 2/52 (3%)
Query: 1018 IELRGVHFSYPSRPEV--VIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLIL 1067
I + F++ S + KD NL+V G+ +A+VG GSGKS++LS +L
Sbjct: 1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALL 52
|
This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 204 |
| >gnl|CDD|225438 COG2884, FtsE, Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Score = 49.5 bits (119), Expect = 2e-06
Identities = 22/59 (37%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
Query: 1018 IELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGK 1076
I V +YP E +D + + G+ + L G SG+GKST+L LI PT GK
Sbjct: 2 IRFENVSKAYPGGRE--ALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGK 58
|
Length = 223 |
| >gnl|CDD|213259 cd03292, ABC_FtsE_transporter, ATP-binding cassette domain of the cell division transporter | Back alignment and domain information |
|---|
Score = 49.3 bits (118), Expect = 2e-06
Identities = 23/58 (39%), Positives = 32/58 (55%), Gaps = 2/58 (3%)
Query: 1018 IELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAG 1075
IE V +YP N+ + AG+ + LVG SG+GKST+L LI + PT+G
Sbjct: 1 IEFINVTKTYP--NGTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSG 56
|
FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. Length = 214 |
| >gnl|CDD|226360 COG3840, ThiQ, ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 50.0 bits (120), Expect = 2e-06
Identities = 25/58 (43%), Positives = 35/58 (60%), Gaps = 5/58 (8%)
Query: 1018 IELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAG 1075
+ L V FSY P F+L V AG+ +A++G SG+GKST+L+LI F P +G
Sbjct: 2 LALDDVRFSYGHLP-----MRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASG 54
|
Length = 231 |
| >gnl|CDD|131721 TIGR02673, FtsE, cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Score = 49.6 bits (119), Expect = 2e-06
Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
Query: 1018 IELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAG 1075
IE V +YP D +L +R G+ + L G SG+GK+T+L L+ P+ G
Sbjct: 2 IEFHNVSKAYPGGVA--ALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRG 57
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein [Cellular processes, Cell division]. Length = 214 |
| >gnl|CDD|188394 TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Score = 50.0 bits (120), Expect = 2e-06
Identities = 22/58 (37%), Positives = 35/58 (60%), Gaps = 3/58 (5%)
Query: 1018 IELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAG 1075
+E+ G+ F Y +R + D + VR G+ +AL+G +G+GKST+ SL+ R Y G
Sbjct: 2 LEVAGLSFRYGARRAL---DDVSFTVRPGRFVALLGPNGAGKSTLFSLLTRLYVAQEG 56
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 236 |
| >gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Score = 51.9 bits (124), Expect = 2e-06
Identities = 58/239 (24%), Positives = 113/239 (47%), Gaps = 22/239 (9%)
Query: 348 AKAAAYPIFEMIERDTMSKASSKT---GRKLDKLSGHIEFKDVSFCYPSRPDVAIFDKFC 404
A+ A PIF+ E D +++ + G K D L + +++ Y A+ D+ C
Sbjct: 1907 AEPAKEPIFD--EDDDVAEERQRIISGGNKTDILRLN----ELTKVYSGTSSPAV-DRLC 1959
Query: 405 LDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIGLVN 464
+ + G+ L+G +G+GK+T ++ SG+ + G +I ++ + Q +G
Sbjct: 1960 VGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSIL-TNISDVHQNMGYCP 2018
Query: 465 QEPAL-FATTIRENI-LYGK-DDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQL 521
Q A+ T RE++ LY + EEI + A S +S +R
Sbjct: 2019 QFDAIDDLLTGREHLYLYARLRGVPAEEIEKVANWSIQSLGLSLYADRLAGT-------Y 2071
Query: 522 SGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRL 579
SGG K++++ + A++ P ++LLDE T+ +D ++ + + ++ GR V+ +H +
Sbjct: 2072 SGGNKRKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSHSM 2130
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272 |
| >gnl|CDD|237894 PRK15064, PRK15064, ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 51.8 bits (125), Expect = 2e-06
Identities = 54/221 (24%), Positives = 100/221 (45%), Gaps = 58/221 (26%)
Query: 366 KASSK--------TGRKLDKLSGHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVG 417
K SS+ +KL + + +E ++++ + + P +F L + AG+ +A++G
Sbjct: 298 KPSSRQNPFIRFEQDKKLHRNA--LEVENLTKGFDNGP---LFKNLNLLLEAGERLAIIG 352
Query: 418 GSGSGKSTVISLIERFYEPLSGEILLDGN-NI------------KGLDL-KWLRQQIGLV 463
+G GK+T++ + EP SG + N NI L L W+ Q
Sbjct: 353 ENGVGKTTLLRTLVGELEPDSGTVKWSENANIGYYAQDHAYDFENDLTLFDWMSQWRQEG 412
Query: 464 NQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSG 523
+ E A+ T R +L+ +DD I ++ K+ LSG
Sbjct: 413 DDEQAVRGTLGR--LLFSQDD-----IKKSVKV------------------------LSG 441
Query: 524 GQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALD 564
G+K R+ + +++ P++L++DE T+ +D ES S+ AL+
Sbjct: 442 GEKGRMLFGKLMMQKPNVLVMDEPTNHMDMESIESLNMALE 482
|
Length = 530 |
| >gnl|CDD|184131 PRK13546, PRK13546, teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 50.2 bits (120), Expect = 2e-06
Identities = 53/204 (25%), Positives = 92/204 (45%), Gaps = 29/204 (14%)
Query: 410 GKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGN-NIKGLDLKWLRQQIGLVNQE-P 467
G ++ LVG +GSGKST+ ++I P G++ +G ++ + Q G+ N E
Sbjct: 50 GDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDRNGEVSVIAISAGLSGQLTGIENIEFK 109
Query: 468 ALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQ 527
L R+ I A +I ++L E FI +++ S G +
Sbjct: 110 MLCMGFKRKEI-----KAMTPKIIEFSELGE---FIYQPVKKY-----------SSGMRA 150
Query: 528 RIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVM----VGRTTVVVAHRLSTIR 583
++ S I NP IL++DEA S D + Q+ LD++ +T V+H L +R
Sbjct: 151 KLGFSINITVNPDILVIDEALSVGD---QTFAQKCLDKIYEFKEQNKTIFFVSHNLGQVR 207
Query: 584 N-ADVIAVVQGRKIVKTGSHEELI 606
IA ++G K+ G ++++
Sbjct: 208 QFCTKIAWIEGGKLKDYGELDDVL 231
|
Length = 264 |
| >gnl|CDD|226647 COG4181, COG4181, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 49.3 bits (118), Expect = 3e-06
Identities = 23/62 (37%), Positives = 38/62 (61%), Gaps = 1/62 (1%)
Query: 1015 EGTIELRGVHFSYPS-RPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPT 1073
E IE+ + + E+ I K L V+ G+++A+VG SGSGKST+L+++ DP+
Sbjct: 4 ENIIEVHHLSKTVGQGEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPS 63
Query: 1074 AG 1075
+G
Sbjct: 64 SG 65
|
Length = 228 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 50.7 bits (122), Expect = 3e-06
Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
Query: 1018 IELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGK 1076
+E V Y ++ KD + ++ G +A+VG +G+GKST+L L+ P +G
Sbjct: 322 LEFENVSKGYDGGR--LLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGT 378
|
Length = 530 |
| >gnl|CDD|226968 COG4615, PvdE, ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 51.0 bits (122), Expect = 3e-06
Identities = 70/353 (19%), Positives = 131/353 (37%), Gaps = 49/353 (13%)
Query: 744 FCCAAVITVIVHAIEHLSFGIMGERLTLRVREKMFSAILSNEIGWFDEMDNSSSILASRL 803
F ++ ++ I L +G+ ++R + IL + + + S+ +LA L
Sbjct: 54 FLGLLLLFMVSSLISQLGLTTLGQHFIYKLRSEFIKKILDTPLERIERL-GSARLLA-GL 111
Query: 804 ESDATLLRTIVVDRSTI--LIQNFGLVTASFVIAFILNWRITLV-VVATYPLIISGHISE 860
SD +R I S + L+Q L S L+ ++ L+ VV I G +
Sbjct: 112 TSD---VRNISFAFSRLPELVQAIILTLGSAAYLAYLSPKMFLLTVVWIVVTIWGGFVLM 168
Query: 861 KLFFQGYGGNLSKAYLKANMLAAEAVSNIRTVAAFCSEDKV----LELYSRELVEPSKRS 916
++ A + ++ +T+ E + E L P +
Sbjct: 169 ARVYKHMA--------AARETEDKLQNDYQTILEGRKELTLNRERAEYVHNNLYIPDAQE 220
Query: 917 FIRGQIAG-IFYGISQFFI----FSSYGLALWYGSVLMGKELASFKSVMKSFMVLIVTAL 971
+ I F+ ++ + GL W + + AS +VL+
Sbjct: 221 YRHHIIRANTFHLLAVNWSNIMLLGLIGLVFW---LALSLGWASTNVAATIVLVLLFLRT 277
Query: 972 AMGETLALVPDLL-------KGNQMAASVFEVLDRKTQVIGDIGEELTNVEGTIELRGVH 1024
+ + ++P LL K ++ + ++ + Q D T+ELR V
Sbjct: 278 PLLSAVGILPTLLTAQVAFNKIAKLELAPYKADFPRPQAFPDWK--------TLELRNVR 329
Query: 1025 FSYPSRPEVVIFK--DFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAG 1075
F+Y F NL ++ G+ + L+G +GSGKST+ L+ Y P +G
Sbjct: 330 FAYQD----NAFHVGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQSG 378
|
Length = 546 |
| >gnl|CDD|224058 COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 49.9 bits (120), Expect = 4e-06
Identities = 21/61 (34%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
Query: 1018 IELRGVHFSYPSR--PEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAG 1075
IEL V ++ V D +L++ G+ ++G SG+GKST+L LI PT+G
Sbjct: 2 IELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSG 61
Query: 1076 K 1076
Sbjct: 62 S 62
|
Length = 339 |
| >gnl|CDD|224043 COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 49.7 bits (119), Expect = 4e-06
Identities = 19/59 (32%), Positives = 33/59 (55%), Gaps = 3/59 (5%)
Query: 1018 IELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGK 1076
I + V + + D +L +++G+ +AL+G SG+GKST+L +I P AG+
Sbjct: 3 IRINNVKKRFGAFGA---LDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGR 58
|
Length = 345 |
| >gnl|CDD|236997 PRK11831, PRK11831, putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Score = 49.4 bits (118), Expect = 4e-06
Identities = 22/54 (40%), Positives = 34/54 (62%), Gaps = 3/54 (5%)
Query: 1013 NVEGTIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLI 1066
+V +++RGV F+ +R IF + +L V GK A++G SG GK+T+L LI
Sbjct: 3 SVANLVDMRGVSFTRGNRC---IFDNISLTVPRGKITAIMGPSGIGKTTLLRLI 53
|
Length = 269 |
| >gnl|CDD|236729 PRK10636, PRK10636, putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 50.6 bits (121), Expect = 4e-06
Identities = 56/178 (31%), Positives = 80/178 (44%), Gaps = 52/178 (29%)
Query: 407 IPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIGLVNQE 466
I G+ V LVG +G GKST+++L L EI DG + W Q+ VNQE
Sbjct: 24 INPGQKVGLVGKNGCGKSTLLAL-------LKNEISADGGSYT-FPGNW---QLAWVNQE 72
Query: 467 -PALFATTI-------RE--------------------NILYGKDDA----TMEEITRAA 494
PAL + RE ++GK DA T+ +RAA
Sbjct: 73 TPALPQPALEYVIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIR--SRAA 130
Query: 495 KLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALD 552
L + F SN E+ E V + SGG + R+ +++A++ +LLLDE T+ LD
Sbjct: 131 SLLHGLGF-SN--EQLERPVSD----FSGGWRMRLNLAQALICRSDLLLLDEPTNHLD 181
|
Length = 638 |
| >gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Score = 50.6 bits (122), Expect = 4e-06
Identities = 57/222 (25%), Positives = 95/222 (42%), Gaps = 51/222 (22%)
Query: 400 FDKFCLDIP-AGKIVALVGGSGSGKSTVISLIERFYEPLSGEIL---------------L 443
F + L IP GK+ ++G +G GK+T + + LSGE++ L
Sbjct: 88 FKLYGLPIPKEGKVTGILGPNGIGKTTAVKI-------LSGELIPNLGDYEEEPSWDEVL 140
Query: 444 D-------GNNIKGLDLKWLR--QQIGLVNQEPALFATTIRENILYGKDDATMEEITRAA 494
N K L ++ + V+ P +F +RE +L D+
Sbjct: 141 KRFRGTELQNYFKKLYNGEIKVVHKPQYVDLIPKVFKGKVRE-LLKKVDER--------G 191
Query: 495 KLSEAMSFISNLPERFE-TQVGERGI-QLSGGQKQRIAISRAIVKNPSILLLDEATSALD 552
KL E + ER + +R I +LSGG+ QR+AI+ A++++ DE TS LD
Sbjct: 192 KLDE-------VVERLGLENILDRDISELSGGELQRVAIAAALLRDADFYFFDEPTSYLD 244
Query: 553 AESENSVQEALDRVMVGRTTVVVAHRLSTIRN-ADVIAVVQG 593
+V + + G+ +VV H L+ + AD + + G
Sbjct: 245 IRQRLNVARLIRELAEGKYVLVVEHDLAVLDYLADNVHIAYG 286
|
Length = 590 |
| >gnl|CDD|213229 cd03262, ABC_HisP_GlnQ, ATP-binding cassette domain of the histidine and glutamine transporters | Back alignment and domain information |
|---|
Score = 48.3 bits (116), Expect = 5e-06
Identities = 20/59 (33%), Positives = 34/59 (57%), Gaps = 3/59 (5%)
Query: 1018 IELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGK 1076
IE++ +H S+ + K +L V+ G+ + ++G SGSGKST+L I +P +G
Sbjct: 1 IEIKNLHKSFGDF---HVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGT 56
|
HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, respectively. Histidine permease is a multi-subunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryotic extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein. Length = 213 |
| >gnl|CDD|224046 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 48.8 bits (117), Expect = 5e-06
Identities = 23/59 (38%), Positives = 37/59 (62%), Gaps = 3/59 (5%)
Query: 1018 IELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGK 1076
IE+ + SY +RP + +D +L V G+ AL+G +G+GKST+L IL P++G+
Sbjct: 5 IEVENLTVSYGNRP---VLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGE 60
|
Length = 254 |
| >gnl|CDD|236861 PRK11147, PRK11147, ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Score = 50.3 bits (121), Expect = 5e-06
Identities = 51/188 (27%), Positives = 91/188 (48%), Gaps = 20/188 (10%)
Query: 379 SGHI--EFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEP 436
SG I E ++V++ + F + G +AL+G +G GK+T++ L+ +
Sbjct: 315 SGKIVFEMENVNY---QIDGKQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQA 371
Query: 437 LSGEILLDGNNIKGLDLKWLRQQIGLVNQEPALFATTIRENILYGKDDATMEEITRAAKL 496
SG I G L++ + Q ++ E T+ +N+ GK + + R L
Sbjct: 372 DSGRIHC-GTK---LEVAYFDQHRAELDPE-----KTVMDNLAEGKQEVMVNGRPRHV-L 421
Query: 497 SEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESE 556
F+ + P+R T V LSGG++ R+ ++R +K ++L+LDE T+ LD E+
Sbjct: 422 GYLQDFLFH-PKRAMTPVK----ALSGGERNRLLLARLFLKPSNLLILDEPTNDLDVETL 476
Query: 557 NSVQEALD 564
++E LD
Sbjct: 477 ELLEELLD 484
|
Length = 635 |
| >gnl|CDD|200134 TIGR01842, type_I_sec_PrtD, type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Score = 49.7 bits (119), Expect = 6e-06
Identities = 34/135 (25%), Positives = 55/135 (40%), Gaps = 26/135 (19%)
Query: 945 GSVLMGKELASFK---SVMKSFMVLIVTALAMGETLALVPDLLKGNQMAASVFEVLDRKT 1001
GS+L+G+ LA K F + E LA P S +
Sbjct: 263 GSILVGRALAPIDGAIGGWKQFSGARQAYKRLNELLANYP----------SRDPAM---- 308
Query: 1002 QVIGDIGEELTNVEGTIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKST 1061
L EG + + V P + + + ++AG+++A++G SGSGKST
Sbjct: 309 --------PLPEPEGHLSVENVTIVPPG-GKKPTLRGISFSLQAGEALAIIGPSGSGKST 359
Query: 1062 VLSLILRFYDPTAGK 1076
+ LI+ + PT+G
Sbjct: 360 LARLIVGIWPPTSGS 374
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 544 |
| >gnl|CDD|213267 cd03300, ABC_PotA_N, ATP-binding cassette domain of the polyamine transporter | Back alignment and domain information |
|---|
Score = 48.4 bits (116), Expect = 6e-06
Identities = 22/59 (37%), Positives = 31/59 (52%), Gaps = 3/59 (5%)
Query: 1018 IELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGK 1076
IEL V Y V +L ++ G+ L+G SG GK+T+L LI F PT+G+
Sbjct: 1 IELENVSKFYGG---FVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGE 56
|
PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 232 |
| >gnl|CDD|223521 COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 49.1 bits (118), Expect = 7e-06
Identities = 15/60 (25%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Query: 1018 IELRGVHFSYPSRPEVV-IFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGK 1076
+E++ + S+P+ VV + +++ G+ + +VG+SGSGKS + I+ +
Sbjct: 2 LEVKNLSVSFPTDAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNAR 61
|
Length = 316 |
| >gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 49.5 bits (119), Expect = 8e-06
Identities = 21/59 (35%), Positives = 38/59 (64%), Gaps = 3/59 (5%)
Query: 1018 IELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGK 1076
+E+RG+ +P VV D +L V+ G+ AL+G++G+GKST++ ++ Y P +G+
Sbjct: 5 LEMRGITKRFPG---VVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGE 60
|
Length = 501 |
| >gnl|CDD|213186 cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component of branched chain amino acids transport system | Back alignment and domain information |
|---|
Score = 47.8 bits (115), Expect = 9e-06
Identities = 20/59 (33%), Positives = 34/59 (57%), Gaps = 3/59 (5%)
Query: 1018 IELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGK 1076
+E+RG+ + +V D + VR G+ L+G +G+GK+T+ +LI F PT+G
Sbjct: 1 LEVRGLTKRFGG---LVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGS 56
|
The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). Length = 236 |
| >gnl|CDD|224051 COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 47.9 bits (115), Expect = 1e-05
Identities = 18/60 (30%), Positives = 33/60 (55%), Gaps = 3/60 (5%)
Query: 1017 TIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGK 1076
IE++ + S+ + + K +L V G+ + ++G SGSGKST+L + +P +G
Sbjct: 2 MIEIKNLSKSFG---DKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGS 58
|
Length = 240 |
| >gnl|CDD|213261 cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system | Back alignment and domain information |
|---|
Score = 47.6 bits (114), Expect = 1e-05
Identities = 21/44 (47%), Positives = 28/44 (63%)
Query: 1033 VVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGK 1076
V D +L VR G+ ++G SGSGKST+L I R +PT+GK
Sbjct: 37 TVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGK 80
|
This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 269 |
| >gnl|CDD|237648 PRK14250, PRK14250, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 47.5 bits (113), Expect = 1e-05
Identities = 24/59 (40%), Positives = 32/59 (54%), Gaps = 3/59 (5%)
Query: 1018 IELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGK 1076
IE + V +S I KD ++K G +VG SG+GKST++ LI R DPT G
Sbjct: 4 IEFKEVSYS---SFGKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGS 59
|
Length = 241 |
| >gnl|CDD|237452 PRK13632, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 48.1 bits (115), Expect = 1e-05
Identities = 19/66 (28%), Positives = 38/66 (57%), Gaps = 1/66 (1%)
Query: 1011 LTNVEGTIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFY 1070
+ N I++ V FSYP+ + K+ + ++ G+ +A++G +GSGKST+ ++
Sbjct: 1 IKNKSVMIKVENVSFSYPNSENNAL-KNVSFEINEGEYVAILGHNGSGKSTISKILTGLL 59
Query: 1071 DPTAGK 1076
P +G+
Sbjct: 60 KPQSGE 65
|
Length = 271 |
| >gnl|CDD|130234 TIGR01166, cbiO, cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Score = 46.6 bits (111), Expect = 1e-05
Identities = 19/50 (38%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
Query: 1027 YPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGK 1076
YP PEV+ K N G+ +AL+G +G+GKST+L + P +G
Sbjct: 1 YPGGPEVL--KGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGA 48
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux [Transport and binding proteins, Cations and iron carrying compounds]. Length = 190 |
| >gnl|CDD|213202 cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the metal-type transporters | Back alignment and domain information |
|---|
Score = 47.1 bits (113), Expect = 1e-05
Identities = 21/59 (35%), Positives = 35/59 (59%), Gaps = 3/59 (5%)
Query: 1019 ELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKA 1077
E+ + SY P + +D + +V+ G+ +A+VG +G+GKST+L IL PT+G
Sbjct: 1 EVEDLTVSYGGHP---VLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSI 56
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. Length = 213 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 48.7 bits (117), Expect = 1e-05
Identities = 21/59 (35%), Positives = 36/59 (61%), Gaps = 3/59 (5%)
Query: 1018 IELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGK 1076
+ELRG+ S+ V +L VR G+ AL+G++G+GKST++ ++ Y P +G+
Sbjct: 9 LELRGISKSFGG---VKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGE 64
|
Length = 500 |
| >gnl|CDD|213230 cd03263, ABC_subfamily_A, ATP-binding cassette domain of the lipid transporters, subfamily A | Back alignment and domain information |
|---|
Score = 47.5 bits (114), Expect = 1e-05
Identities = 17/60 (28%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Query: 1018 IELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKA 1077
+++R + +Y + + D +L V G+ L+G +G+GK+T L ++ PT+G A
Sbjct: 1 LQIRNLTKTYKKGTKPAV-DDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTA 59
|
The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. Length = 220 |
| >gnl|CDD|233062 TIGR00630, uvra, excinuclease ABC, A subunit | Back alignment and domain information |
|---|
Score = 49.2 bits (118), Expect = 1e-05
Identities = 38/131 (29%), Positives = 61/131 (46%), Gaps = 22/131 (16%)
Query: 498 EAMSFISNLP---ERFET---------QVGERGIQLSGGQKQRIAISRAIVK---NPSIL 542
EA F +P + +T ++G+ LSGG+ QRI +++ + K ++
Sbjct: 795 EAYEFFEAVPSISRKLQTLCDVGLGYIRLGQPATTLSGGEAQRIKLAKELSKRSTGRTLY 854
Query: 543 LLDEATSALDAESENSVQEALDR-VMVGRTTVVVAHRLSTIRNADVI------AVVQGRK 595
+LDE T+ L + + E L R V G T VV+ H L I+ AD I G
Sbjct: 855 ILDEPTTGLHFDDIKKLLEVLQRLVDKGNTVVVIEHNLDVIKTADYIIDLGPEGGDGGGT 914
Query: 596 IVKTGSHEELI 606
+V +G+ EE+
Sbjct: 915 VVASGTPEEVA 925
|
This family is a member of the ABC transporter superfamily of proteins of which all members for which functions are known except the UvrA proteins are involved in the transport of material through membranes. UvrA orthologs are involved in the recognition of DNA damage as a step in nucleotide excision repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University) [DNA metabolism, DNA replication, recombination, and repair]. Length = 925 |
| >gnl|CDD|184129 PRK13543, PRK13543, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 47.2 bits (112), Expect = 1e-05
Identities = 45/168 (26%), Positives = 78/168 (46%), Gaps = 22/168 (13%)
Query: 393 SRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLD 452
SR + +F + AG+ + + G +G+GK+T++ ++ SG+I +DG D
Sbjct: 20 SRNEEPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRGD 79
Query: 453 LKWLRQQIGLVNQEPALFAT-TIRENI-----LYGKDDATMEEITRAAKLSEAMSFISNL 506
+ + + P L A + EN+ L+G+ RA ++ + I L
Sbjct: 80 RS---RFMAYLGHLPGLKADLSTLENLHFLCGLHGR---------RAKQMPGSALAIVGL 127
Query: 507 PERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAE 554
+T V QLS GQK+R+A++R + + LLDE + LD E
Sbjct: 128 AGYEDTLVR----QLSAGQKKRLALARLWLSPAPLWLLDEPYANLDLE 171
|
Length = 214 |
| >gnl|CDD|213269 cd03369, ABCC_NFT1, ATP-binding cassette domain 2 of NFT1, subfamily C | Back alignment and domain information |
|---|
Score = 46.3 bits (110), Expect = 2e-05
Identities = 23/62 (37%), Positives = 39/62 (62%), Gaps = 3/62 (4%)
Query: 1016 GTIELRGVHFSY-PSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTA 1074
G IE+ + Y P P V+ K+ + KV+AG+ + +VG++G+GKST++ + RF +
Sbjct: 5 GEIEVENLSVRYAPDLPPVL--KNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEE 62
Query: 1075 GK 1076
GK
Sbjct: 63 GK 64
|
Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (multidrug resistance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. Length = 207 |
| >gnl|CDD|130344 TIGR01277, thiQ, thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 46.4 bits (110), Expect = 2e-05
Identities = 18/37 (48%), Positives = 28/37 (75%)
Query: 1039 FNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAG 1075
F+L V G+ +A++G SG+GKST+L+LI F +P +G
Sbjct: 17 FDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASG 53
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found [Transport and binding proteins, Other]. Length = 213 |
| >gnl|CDD|131266 TIGR02211, LolD_lipo_ex, lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Score = 47.0 bits (112), Expect = 2e-05
Identities = 18/45 (40%), Positives = 30/45 (66%)
Query: 1032 EVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGK 1076
+ + K +L + G+ +A+VG SGSGKST+L L+ +PT+G+
Sbjct: 17 DTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGE 61
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina [Protein fate, Protein and peptide secretion and trafficking]. Length = 221 |
| >gnl|CDD|213265 cd03298, ABC_ThiQ_thiamine_transporter, ATP-binding cassette domain of the thiamine transport system | Back alignment and domain information |
|---|
Score = 46.3 bits (110), Expect = 2e-05
Identities = 24/58 (41%), Positives = 33/58 (56%), Gaps = 5/58 (8%)
Query: 1018 IELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAG 1075
+ L + FSY +P F+L G+ A+VG SGSGKST+L+LI F P +G
Sbjct: 1 VRLDKIRFSYGEQP-----MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSG 53
|
Part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|236992 PRK11819, PRK11819, putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 48.2 bits (116), Expect = 2e-05
Identities = 52/205 (25%), Positives = 90/205 (43%), Gaps = 62/205 (30%)
Query: 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEI 441
IE +++S + R + D +P G IV ++G +G+GKST+ +I +P SG I
Sbjct: 325 IEAENLSKSFGDR---LLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTI 381
Query: 442 LLDGNNIKGLDLKWLRQQIGLVNQEPALFATTIRENILYGKDDATM-EEITRAAKLSEAM 500
+ G +K + V+Q R+ + + T+ EEI S +
Sbjct: 382 KI-GETVK----------LAYVDQS--------RDAL---DPNKTVWEEI------SGGL 413
Query: 501 SFISNLPERFETQVGERGI---------------------QLSGGQKQRIAISRAIVKNP 539
I +VG R I LSGG++ R+ +++ + +
Sbjct: 414 DII---------KVGNREIPSRAYVGRFNFKGGDQQKKVGVLSGGERNRLHLAKTLKQGG 464
Query: 540 SILLLDEATSALDAESENSVQEALD 564
++LLLDE T+ LD E+ +++EAL
Sbjct: 465 NVLLLDEPTNDLDVETLRALEEALL 489
|
Length = 556 |
| >gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Score = 48.7 bits (117), Expect = 2e-05
Identities = 48/197 (24%), Positives = 83/197 (42%), Gaps = 43/197 (21%)
Query: 400 FDKFCLDIPAGKI-----VALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLK 454
F L++ G+I + +VG +G GK+T L+ +P GE+ + L +
Sbjct: 350 LGDFSLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPE------LKIS 403
Query: 455 WLRQQIGLVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMSFIS-------NLP 507
+ Q I D T+E++ R+ S+ L
Sbjct: 404 YKPQYIK-------------------PDYDGTVEDLLRSITDDLGSSYYKSEIIKPLQLE 444
Query: 508 ERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVM 567
+ V + LSGG+ QR+AI+ + ++ + LLDE ++ LD E +V +A+ R+
Sbjct: 445 RLLDKNVKD----LSGGELQRVAIAACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRRIA 500
Query: 568 VGR--TTVVVAHRLSTI 582
R T +VV H + I
Sbjct: 501 EEREATALVVDHDIYMI 517
|
Length = 590 |
| >gnl|CDD|185049 PRK15093, PRK15093, antimicrobial peptide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 47.5 bits (113), Expect = 2e-05
Identities = 32/129 (24%), Positives = 62/129 (48%), Gaps = 15/129 (11%)
Query: 520 QLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVV--VAH 577
+L+ G+ Q++ I+ A+ P +L+ DE T+A++ ++ + L R+ T + ++H
Sbjct: 158 ELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISH 217
Query: 578 RLSTIRN-ADVIAVVQGRKIVKTGSHEELISNPNSAYAALVQLQEAASQQSNSSQCPNMG 636
L + AD I V+ + V+T +EL++ P+ Y Q+ P+ G
Sbjct: 218 DLQMLSQWADKINVLYCGQTVETAPSKELVTTPHHPYT-----------QALIRAIPDFG 266
Query: 637 RPLSIKFSR 645
+ K SR
Sbjct: 267 SAMPHK-SR 274
|
Length = 330 |
| >gnl|CDD|236863 PRK11153, metN, DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 47.5 bits (114), Expect = 3e-05
Identities = 18/60 (30%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Query: 1018 IELRGVHFSYP-SRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGK 1076
IEL+ + +P + + +L + AG+ ++G SG+GKST++ I PT+G+
Sbjct: 2 IELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGR 61
|
Length = 343 |
| >gnl|CDD|184200 PRK13640, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 46.7 bits (111), Expect = 3e-05
Identities = 18/49 (36%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Query: 1018 IELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLI 1066
+E + V F+YP + + D + + G AL+G +GSGKST+ LI
Sbjct: 6 VEFKHVSFTYPDSKKPAL-NDISFSIPRGSWTALIGHNGSGKSTISKLI 53
|
Length = 282 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 47.2 bits (113), Expect = 4e-05
Identities = 14/52 (26%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Query: 1018 IELRGVHFSYPSRPEVV-IFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILR 1068
+E+ + + + V +D + +V G+ + +VG+SGSGKST+ ++
Sbjct: 6 LEVENLTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMG 57
|
Length = 539 |
| >gnl|CDD|226643 COG4175, ProV, ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 47.0 bits (112), Expect = 4e-05
Identities = 19/44 (43%), Positives = 28/44 (63%)
Query: 1033 VVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGK 1076
VV D +L V G+ ++G SGSGKST++ L+ R +PT G+
Sbjct: 41 VVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRGE 84
|
Length = 386 |
| >gnl|CDD|182716 PRK10771, thiQ, thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 45.7 bits (109), Expect = 4e-05
Identities = 18/37 (48%), Positives = 27/37 (72%)
Query: 1039 FNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAG 1075
F+L V G+ +A++G SG+GKST+L+LI F P +G
Sbjct: 18 FDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASG 54
|
Length = 232 |
| >gnl|CDD|131377 TIGR02324, CP_lyasePhnL, phosphonate C-P lyase system protein PhnL | Back alignment and domain information |
|---|
Score = 45.8 bits (109), Expect = 4e-05
Identities = 18/42 (42%), Positives = 28/42 (66%)
Query: 1035 IFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGK 1076
+ K+ +L V AG+ +AL G SG+GKST+L + Y P +G+
Sbjct: 23 VLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGR 64
|
Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. Length = 224 |
| >gnl|CDD|182852 PRK10938, PRK10938, putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Score = 47.3 bits (113), Expect = 4e-05
Identities = 59/210 (28%), Positives = 94/210 (44%), Gaps = 41/210 (19%)
Query: 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLI-----ERFYE 435
I + Y RP I + G+ +VG +G+GKST++SLI + +
Sbjct: 260 RIVLNNGVVSYNDRP---ILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQGYSN 316
Query: 436 PL--------SGEILLDGNNIKGLDLKWLRQQIGLVNQEPAL---FATTIRENILYGKDD 484
L SGE + D IK + IG V+ L +T++R IL G D
Sbjct: 317 DLTLFGRRRGSGETIWD---IK--------KHIGYVSSSLHLDYRVSTSVRNVILSGFFD 365
Query: 485 ATMEEITRA---AKLSEAMSFISNLPERFETQVGERGIQ-LSGGQKQRIA-ISRAIVKNP 539
+ I +A + A ++ L + + + LS GQ QR+A I RA+VK+P
Sbjct: 366 SI--GIYQAVSDRQQKLAQQWLDIL--GIDKRTADAPFHSLSWGQ-QRLALIVRALVKHP 420
Query: 540 SILLLDEATSALDAESENSVQEALDRVMVG 569
++L+LDE LD + V+ +D V++
Sbjct: 421 TLLILDEPLQGLDPLNRQLVRRFVD-VLIS 449
|
Length = 490 |
| >gnl|CDD|223256 COG0178, UvrA, Excinuclease ATPase subunit [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Score = 47.2 bits (113), Expect = 5e-05
Identities = 38/102 (37%), Positives = 51/102 (50%), Gaps = 13/102 (12%)
Query: 521 LSGGQKQRIAISRAIVKNPSILL--LDEATSAL---DAESENSVQEALDRVMVGRTTVVV 575
LSGG+ QRI ++ I + +L LDE + L D E + L + G T +VV
Sbjct: 482 LSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLIETLKRLRDL--GNTVIVV 539
Query: 576 AHRLSTIRNADVI------AVVQGRKIVKTGSHEELISNPNS 611
H TIR AD I A G +IV G+ EEL++NP S
Sbjct: 540 EHDEDTIRAADHIIDIGPGAGEHGGEIVAEGTPEELLANPES 581
|
Length = 935 |
| >gnl|CDD|213205 cd03238, ABC_UvrA, ATP-binding cassette domain of the excision repair protein UvrA | Back alignment and domain information |
|---|
Score = 45.0 bits (107), Expect = 5e-05
Identities = 46/185 (24%), Positives = 80/185 (43%), Gaps = 47/185 (25%)
Query: 407 IPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIGLVNQE 466
IP +V + G SGSGKST+++ E Y SG+ L I L K+ R ++ ++Q
Sbjct: 18 IPLNVLVVVTGVSGSGKSTLVN--EGLYA--SGKARL----ISFLP-KFSRNKLIFIDQL 68
Query: 467 PALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQK 526
L I + Y L + +S LSGG+
Sbjct: 69 QFL----IDVGLGY-------------LTLGQKLS------------------TLSGGEL 93
Query: 527 QRIAISRAIVKNP--SILLLDEATSALDAESENSVQEALDR-VMVGRTTVVVAHRLSTIR 583
QR+ ++ + P ++ +LDE ++ L + N + E + + +G T +++ H L +
Sbjct: 94 QRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEHNLDVLS 153
Query: 584 NADVI 588
+AD I
Sbjct: 154 SADWI 158
|
Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. Length = 176 |
| >gnl|CDD|213236 cd03269, ABC_putative_ATPase, ATP-binding cassette domain of an uncharacterized transporter | Back alignment and domain information |
|---|
Score = 45.0 bits (107), Expect = 6e-05
Identities = 14/45 (31%), Positives = 24/45 (53%)
Query: 1032 EVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGK 1076
V D + V G+ L+G +G+GK+T + +IL P +G+
Sbjct: 12 RVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGE 56
|
This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 210 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 46.5 bits (111), Expect = 6e-05
Identities = 18/59 (30%), Positives = 35/59 (59%), Gaps = 3/59 (5%)
Query: 1017 TIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAG 1075
I L + +Y RP + ++ +L + G+ + LVG++G+GKST+L ++ +P +G
Sbjct: 3 MITLENLSLAYGDRP---LLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSG 58
|
Length = 530 |
| >gnl|CDD|182561 PRK10575, PRK10575, iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 45.5 bits (108), Expect = 7e-05
Identities = 24/69 (34%), Positives = 35/69 (50%), Gaps = 3/69 (4%)
Query: 1009 EELTNVEGTIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILR 1068
E + + T LR V F P R + +L AGK L+G +GSGKST+L ++ R
Sbjct: 3 EYTNHSDTTFALRNVSFRVPGR---TLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGR 59
Query: 1069 FYDPTAGKA 1077
P+ G+
Sbjct: 60 HQPPSEGEI 68
|
Length = 265 |
| >gnl|CDD|130252 TIGR01184, ntrCD, nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Score = 45.1 bits (107), Expect = 8e-05
Identities = 18/39 (46%), Positives = 27/39 (69%)
Query: 1037 KDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAG 1075
K NL ++ G+ ++L+G SG GKST+L+LI PT+G
Sbjct: 2 KGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSG 40
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase [Transport and binding proteins, Anions, Transport and binding proteins, Other]. Length = 230 |
| >gnl|CDD|184128 PRK13541, PRK13541, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 44.5 bits (105), Expect = 8e-05
Identities = 42/195 (21%), Positives = 81/195 (41%), Gaps = 23/195 (11%)
Query: 399 IFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQ 458
+FD + I + G +G GKS+++ +I +P SG I NI
Sbjct: 16 LFD-LSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNI---------- 64
Query: 459 QIGLVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQ--VGE 516
N + T I N+ + E + +++ + + F+ + E
Sbjct: 65 -----NNIAKPYCTYIGHNLGLKLEMTVFENLKFWSEIYNSAETLYAAIHYFKLHDLLDE 119
Query: 517 RGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVM---VGRTTV 573
+ LS G ++ +AI+R I + LLDE + L E+ + + + VM G +
Sbjct: 120 KCYSLSSGMQKIVAIARLIACQSDLWLLDEVETNLSKENRDLLNNLI--VMKANSGGIVL 177
Query: 574 VVAHRLSTIRNADVI 588
+ +H S+I++A ++
Sbjct: 178 LSSHLESSIKSAQIL 192
|
Length = 195 |
| >gnl|CDD|182893 PRK11000, PRK11000, maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 45.8 bits (109), Expect = 9e-05
Identities = 25/56 (44%), Positives = 33/56 (58%), Gaps = 3/56 (5%)
Query: 1020 LRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAG 1075
LR V +Y +VVI KD NL + G+ + VG SG GKST+L +I D T+G
Sbjct: 6 LRNVTKAYG---DVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSG 58
|
Length = 369 |
| >gnl|CDD|236707 PRK10522, PRK10522, multidrug transporter membrane component/ATP-binding component; Provisional | Back alignment and domain information |
|---|
Score = 46.1 bits (110), Expect = 9e-05
Identities = 23/60 (38%), Positives = 35/60 (58%), Gaps = 2/60 (3%)
Query: 1017 TIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGK 1076
T+ELR V F+Y V NL ++ G+ + L+G +GSGKST+ L+ Y P +G+
Sbjct: 322 TLELRNVTFAYQDNGFSV--GPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGE 379
|
Length = 547 |
| >gnl|CDD|215558 PLN03073, PLN03073, ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Score = 46.4 bits (110), Expect = 9e-05
Identities = 37/116 (31%), Positives = 59/116 (50%), Gaps = 13/116 (11%)
Query: 484 DATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILL 543
DA E RAA + +SF + + T+ SGG + RIA++RA+ P +LL
Sbjct: 316 DAYTAE-ARAASILAGLSFTPEMQVK-ATK------TFSGGWRMRIALARALFIEPDLLL 367
Query: 544 LDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRNADV--IAVVQGRKIV 597
LDE T+ LD + ++ L + +T +VV+H + N V I + G+K+V
Sbjct: 368 LDEPTNHLDLHAVLWLETYL--LKWPKTFIVVSHAREFL-NTVVTDILHLHGQKLV 420
|
Length = 718 |
| >gnl|CDD|213193 cd03226, ABC_cobalt_CbiO_domain2, Second domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 44.2 bits (105), Expect = 1e-04
Identities = 16/58 (27%), Positives = 33/58 (56%), Gaps = 2/58 (3%)
Query: 1019 ELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGK 1076
+ + FSY E++ D +L + AG+ +AL G++G+GK+T+ ++ ++G
Sbjct: 1 RIENISFSYKKGTEIL--DDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGS 56
|
Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 205 |
| >gnl|CDD|237894 PRK15064, PRK15064, ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 45.7 bits (109), Expect = 1e-04
Identities = 17/59 (28%), Positives = 37/59 (62%), Gaps = 3/59 (5%)
Query: 1018 IELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGK 1076
+E+ + + + P +FK+ NL + AG+ +A++G++G GK+T+L ++ +P +G
Sbjct: 320 LEVENLTKGFDNGP---LFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGT 375
|
Length = 530 |
| >gnl|CDD|184130 PRK13545, tagH, teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 46.0 bits (109), Expect = 1e-04
Identities = 48/186 (25%), Positives = 82/186 (44%), Gaps = 30/186 (16%)
Query: 406 DIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIGLVNQ 465
++P G+IV ++G +GSGKST+ +LI P G + +IKG + GL Q
Sbjct: 46 EVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTV-----DIKG-SAALIAISSGLNGQ 99
Query: 466 EPALFATTIRENI-----LYGKDDATMEEIT-RAAKLSEAMSFISNLPERFETQVGERGI 519
+ ENI + G ++EI + ++ FI P +
Sbjct: 100 LTGI------ENIELKGLMMGLTKEKIKEIIPEIIEFADIGKFI-YQPVK---------- 142
Query: 520 QLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHR 578
S G K R+ + ++ NP IL++DEA S D + ++ G+T ++H
Sbjct: 143 TYSSGMKSRLGFAISVHINPDILVIDEALSVGDQTFTKKCLDKMNEFKEQGKTIFFISHS 202
Query: 579 LSTIRN 584
LS +++
Sbjct: 203 LSQVKS 208
|
Length = 549 |
| >gnl|CDD|213225 cd03258, ABC_MetN_methionine_transporter, ATP-binding cassette domain of methionine transporter | Back alignment and domain information |
|---|
Score = 44.1 bits (105), Expect = 2e-04
Identities = 21/59 (35%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 1018 IELRGVHFSYPSRP-EVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAG 1075
IEL+ V + +V KD +L V G+ ++G+SG+GKST++ I PT+G
Sbjct: 2 IELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSG 60
|
MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 233 |
| >gnl|CDD|224042 COG1117, PstB, ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 44.1 bits (105), Expect = 2e-04
Identities = 23/65 (35%), Positives = 31/65 (47%), Gaps = 3/65 (4%)
Query: 1011 LTNVEGTIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFY 1070
T IE+R ++ Y + KD NL + K AL+G SG GKST+L + R
Sbjct: 1 ETMKIPAIEVRDLNLYYG---DKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMN 57
Query: 1071 DPTAG 1075
D G
Sbjct: 58 DLIPG 62
|
Length = 253 |
| >gnl|CDD|213263 cd03296, ABC_CysA_sulfate_importer, ATP-binding cassette domain of the sulfate transporter | Back alignment and domain information |
|---|
Score = 43.9 bits (104), Expect = 2e-04
Identities = 21/60 (35%), Positives = 34/60 (56%), Gaps = 3/60 (5%)
Query: 1017 TIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGK 1076
+IE+R V + + D +L + +G+ +AL+G SGSGK+T+L LI P +G
Sbjct: 2 SIEVRNVSKRFGDFVAL---DDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGT 58
|
Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 239 |
| >gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 44.2 bits (105), Expect = 2e-04
Identities = 20/58 (34%), Positives = 35/58 (60%), Gaps = 2/58 (3%)
Query: 1018 IELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAG 1075
+E+ + YP+ K+ NL + G+ +A++G SG+GKST+L I R +P++G
Sbjct: 2 LEVENLSKVYPN--GKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSG 57
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates [Transport and binding proteins, Anions]. Length = 243 |
| >gnl|CDD|184199 PRK13639, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 43.9 bits (104), Expect = 2e-04
Identities = 24/62 (38%), Positives = 35/62 (56%), Gaps = 8/62 (12%)
Query: 1018 IELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRF---YDPTA 1074
+E R + +SYP E + K N K G+ +AL+G +G+GKST L L F PT+
Sbjct: 2 LETRDLKYSYPDGTEAL--KGINFKAEKGEMVALLGPNGAGKST---LFLHFNGILKPTS 56
Query: 1075 GK 1076
G+
Sbjct: 57 GE 58
|
Length = 275 |
| >gnl|CDD|237422 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 44.4 bits (106), Expect = 2e-04
Identities = 17/60 (28%), Positives = 32/60 (53%), Gaps = 3/60 (5%)
Query: 1017 TIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGK 1076
+E R + R + D +L +R G+ +A++G +G+GKST+L + P +G+
Sbjct: 2 MLEARNLSVRLGGRT---LLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGE 58
|
Length = 258 |
| >gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 44.8 bits (106), Expect = 2e-04
Identities = 37/189 (19%), Positives = 79/189 (41%), Gaps = 29/189 (15%)
Query: 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYE-PLSGE 440
+E ++++ P D + G+I+ + G G+G++ ++ + Y G
Sbjct: 258 LEARNLTCWDVINPHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGN 317
Query: 441 ILLDGN--NIKGLDLKWLRQQIGLVNQEPALFATTIRENILYGKDDATMEEITRAAKLSE 498
+ ++G +I+ + +R I +V ++ R I+ + IT + +
Sbjct: 318 VFINGKPVDIRNP-AQAIRAGIAMVPEDRK------RHGIV--PILGVGKNITLSV--LK 366
Query: 499 AMSFISNLPERFETQVGERGIQ---------------LSGGQKQRIAISRAIVKNPSILL 543
+ F + E Q+ IQ LSGG +Q+ +++ ++ NP +L+
Sbjct: 367 SFCFKMRIDAAAELQIIGSAIQRLKVKTASPFLPIGRLSGGNQQKAVLAKMLLTNPRVLI 426
Query: 544 LDEATSALD 552
LDE T +D
Sbjct: 427 LDEPTRGVD 435
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500 |
| >gnl|CDD|226631 COG4152, COG4152, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 44.3 bits (105), Expect = 2e-04
Identities = 18/60 (30%), Positives = 33/60 (55%), Gaps = 3/60 (5%)
Query: 1017 TIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGK 1076
+E+ GV S+ + V + + +V G+ L+G +G+GK+T +IL +PT G+
Sbjct: 2 ALEIEGVTKSFGDKKAV---DNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGE 58
|
Length = 300 |
| >gnl|CDD|225265 COG2401, COG2401, ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only] | Back alignment and domain information |
|---|
Score = 45.2 bits (107), Expect = 2e-04
Identities = 20/55 (36%), Positives = 33/55 (60%), Gaps = 8/55 (14%)
Query: 1030 RPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRF--------YDPTAGK 1076
E + ++ NL+++ G +A+VGQSG+GK+T+L +IL Y P +GK
Sbjct: 393 VIERYVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGK 447
|
Length = 593 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 44.6 bits (106), Expect = 3e-04
Identities = 17/64 (26%), Positives = 31/64 (48%), Gaps = 8/64 (12%)
Query: 1018 IELRGVHFSYPSRP--------EVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRF 1069
+E+ + +P + + +L +R G+++ LVG+SGSGKST+ +LR
Sbjct: 277 LEVEDLRVWFPIKGGFLRRTVDHLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRL 336
Query: 1070 YDPT 1073
Sbjct: 337 IPSQ 340
|
Length = 534 |
| >gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Score = 44.7 bits (106), Expect = 3e-04
Identities = 22/97 (22%), Positives = 42/97 (43%), Gaps = 11/97 (11%)
Query: 489 EITRAAKLSEAMSFISNLPERFETQVGE---RGIQLSGGQKQRIAISRAIVKNPSILLLD 545
A +++ L T+VG RG+ SGG+++R++I+ A + I D
Sbjct: 177 REEYAKHIADVYMATYGLSHTRNTKVGNDFVRGV--SGGERKRVSIAEASLGGAKIQCWD 234
Query: 546 EATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTI 582
AT LD+ + AL+ + +T+ + +
Sbjct: 235 NATRGLDSAT------ALEFIRALKTSANILDTTPLV 265
|
[Transport and binding proteins, Other]. Length = 1394 |
| >gnl|CDD|234734 PRK00349, uvrA, excinuclease ABC subunit A; Reviewed | Back alignment and domain information |
|---|
Score = 44.3 bits (106), Expect = 3e-04
Identities = 41/137 (29%), Positives = 66/137 (48%), Gaps = 22/137 (16%)
Query: 497 SEAMSFISNLP---ERFET---------QVGERGIQLSGGQKQRIAISRAIVKNP---SI 541
EA+ F +P + +T ++G+ LSGG+ QR+ +++ + K ++
Sbjct: 795 EEALEFFEAIPKIARKLQTLVDVGLGYIKLGQPATTLSGGEAQRVKLAKELSKRSTGKTL 854
Query: 542 LLLDEATSALDAESENSVQEALDR-VMVGRTTVVVAHRLSTIRNAD-VIAV-----VQGR 594
+LDE T+ L E + E L R V G T VV+ H L I+ AD +I + G
Sbjct: 855 YILDEPTTGLHFEDIRKLLEVLHRLVDKGNTVVVIEHNLDVIKTADWIIDLGPEGGDGGG 914
Query: 595 KIVKTGSHEELISNPNS 611
+IV TG+ EE+ S
Sbjct: 915 EIVATGTPEEVAKVEAS 931
|
Length = 943 |
| >gnl|CDD|184195 PRK13635, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 43.5 bits (103), Expect = 4e-04
Identities = 22/65 (33%), Positives = 33/65 (50%), Gaps = 5/65 (7%)
Query: 1013 NVEGTIELRGVHFSYP--SRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFY 1070
E I + + F YP + + KD + V G+ +A+VG +GSGKST+ L+
Sbjct: 1 MKEEIIRVEHISFRYPDAATYAL---KDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLL 57
Query: 1071 DPTAG 1075
P AG
Sbjct: 58 LPEAG 62
|
Length = 279 |
| >gnl|CDD|183055 PRK11247, ssuB, aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 43.1 bits (102), Expect = 4e-04
Identities = 21/56 (37%), Positives = 31/56 (55%), Gaps = 3/56 (5%)
Query: 1020 LRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAG 1075
L V Y R + +L + AG+ +A+VG+SG GKST+L L+ P+AG
Sbjct: 15 LNAVSKRYGER---TVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAG 67
|
Length = 257 |
| >gnl|CDD|183056 PRK11248, tauB, taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 42.4 bits (100), Expect = 6e-04
Identities = 17/58 (29%), Positives = 33/58 (56%), Gaps = 3/58 (5%)
Query: 1018 IELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAG 1075
+++ ++ Y +P +D NL + +G+ + ++G SG GK+T+L+LI F G
Sbjct: 2 LQISHLYADYGGKP---ALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHG 56
|
Length = 255 |
| >gnl|CDD|237419 PRK13536, PRK13536, nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Score = 42.9 bits (101), Expect = 6e-04
Identities = 26/105 (24%), Positives = 42/105 (40%), Gaps = 12/105 (11%)
Query: 972 AMGETLALVPDLLKGNQMAASVFEVLDRKTQVIGDIGEELTNVEGTIELRGVHFSYPSRP 1031
A+ E +L + + E + + I+L GV SY +
Sbjct: 5 AVAEEAPRRLELSPIERKHQGISEAKASIPGSMSTVA---------IDLAGVSKSYGDKA 55
Query: 1032 EVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGK 1076
V + V +G+ L+G +G+GKST+ +IL P AGK
Sbjct: 56 VV---NGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGK 97
|
Length = 340 |
| >gnl|CDD|236861 PRK11147, PRK11147, ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Score = 43.4 bits (103), Expect = 6e-04
Identities = 18/58 (31%), Positives = 34/58 (58%), Gaps = 3/58 (5%)
Query: 1019 ELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGK 1076
E+ V++ + + KDF+ +V+ G +AL+G +G GK+T+L L+L +G+
Sbjct: 321 EMENVNYQIDGK---QLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGR 375
|
Length = 635 |
| >gnl|CDD|182880 PRK10982, PRK10982, galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.2 bits (102), Expect = 6e-04
Identities = 42/175 (24%), Positives = 72/175 (41%), Gaps = 27/175 (15%)
Query: 392 PSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGL 451
PS DV+ D+ G+I+ + G G+ ++ ++ + E +G I L G I
Sbjct: 262 PSIRDVS------FDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKINNH 315
Query: 452 D-LKWLRQQIGLVNQEPALFATTIRENILYGKDDATMEE-ITRAAKLSEAMSFISNLPER 509
+ + + LV +E R +Y D I+ + + N +
Sbjct: 316 NANEAINHGFALVTEER-------RSTGIYAYLDIGFNSLISNIRNYKNKVGLLDNSRMK 368
Query: 510 FETQ-------VGERGIQ-----LSGGQKQRIAISRAIVKNPSILLLDEATSALD 552
+TQ V G + LSGG +Q++ I R ++ P IL+LDE T +D
Sbjct: 369 SDTQWVIDSMRVKTPGHRTQIGSLSGGNQQKVIIGRWLLTQPEILMLDEPTRGID 423
|
Length = 491 |
| >gnl|CDD|213258 cd03291, ABCC_CFTR1, ATP-binding cassette domain of the cystic fibrosis transmembrane regulator, subfamily C | Back alignment and domain information |
|---|
Score = 42.5 bits (100), Expect = 7e-04
Identities = 20/55 (36%), Positives = 33/55 (60%)
Query: 1022 GVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGK 1076
+ FS + K+ NLK+ G+ +A+ G +GSGK+++L LIL +P+ GK
Sbjct: 39 NLFFSNLCLVGAPVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGK 93
|
The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. Length = 282 |
| >gnl|CDD|213201 cd03234, ABCG_White, White pigment protein homolog of ABCG transporter subfamily | Back alignment and domain information |
|---|
Score = 41.9 bits (99), Expect = 7e-04
Identities = 16/37 (43%), Positives = 23/37 (62%)
Query: 1030 RPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLI 1066
I D +L V +G+ MA++G SGSGK+T+L I
Sbjct: 17 NKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAI 53
|
The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners. Length = 226 |
| >gnl|CDD|236947 PRK11650, ugpC, glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 42.5 bits (101), Expect = 8e-04
Identities = 19/50 (38%), Positives = 31/50 (62%), Gaps = 2/50 (4%)
Query: 1017 TIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLI 1066
++L+ V SY + +V+ K +L V G+ + LVG SG GKST+L ++
Sbjct: 3 GLKLQAVRKSYDGKTQVI--KGIDLDVADGEFIVLVGPSGCGKSTLLRMV 50
|
Length = 356 |
| >gnl|CDD|130262 TIGR01194, cyc_pep_trnsptr, cyclic peptide transporter | Back alignment and domain information |
|---|
Score = 43.0 bits (101), Expect = 8e-04
Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Query: 1016 GTIELRGVHFSYPS--RPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPT 1073
+IEL+ VH + + E +L++ G + +VG++G GKST+ L Y P
Sbjct: 336 DSIELKDVHMNPKAPEGSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQ 395
Query: 1074 AGK 1076
G+
Sbjct: 396 EGE 398
|
This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake [Transport and binding proteins, Amino acids, peptides and amines, Transport and binding proteins, Other]. Length = 555 |
| >gnl|CDD|236870 PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 42.9 bits (102), Expect = 9e-04
Identities = 14/30 (46%), Positives = 23/30 (76%)
Query: 1040 NLKVRAGKSMALVGQSGSGKSTVLSLILRF 1069
N + AG+ +ALVG SG+GK+++L+ +L F
Sbjct: 370 NFTLPAGQRIALVGPSGAGKTSLLNALLGF 399
|
Length = 588 |
| >gnl|CDD|226963 COG4604, CeuD, ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 41.9 bits (99), Expect = 9e-04
Identities = 17/59 (28%), Positives = 33/59 (55%), Gaps = 3/59 (5%)
Query: 1018 IELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGK 1076
I + V SY ++ + D +L + G +++G +G+GKST+LS++ R +G+
Sbjct: 2 ITIENVSKSYGTKV---VLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGE 57
|
Length = 252 |
| >gnl|CDD|130041 TIGR00968, 3a0106s01, sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 41.7 bits (98), Expect = 0.001
Identities = 19/43 (44%), Positives = 26/43 (60%)
Query: 1034 VIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGK 1076
D NL+V G +AL+G SGSGKST+L +I P +G+
Sbjct: 14 QALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGR 56
|
[Transport and binding proteins, Anions]. Length = 237 |
| >gnl|CDD|184209 PRK13650, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 41.6 bits (98), Expect = 0.001
Identities = 17/49 (34%), Positives = 29/49 (59%)
Query: 1018 IELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLI 1066
IE++ + F Y E D + V+ G+ ++++G +GSGKST + LI
Sbjct: 5 IEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLI 53
|
Length = 279 |
| >gnl|CDD|213191 cd03224, ABC_TM1139_LivF_branched, ATP-binding cassette domain of branched-chain amino acid transporter | Back alignment and domain information |
|---|
Score = 40.9 bits (97), Expect = 0.001
Identities = 17/59 (28%), Positives = 33/59 (55%), Gaps = 3/59 (5%)
Query: 1018 IELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGK 1076
+E+ ++ Y + I +L V G+ +AL+G++G+GK+T+L I+ P +G
Sbjct: 1 LEVENLNAGYG---KSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGS 56
|
LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. Length = 222 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 42.3 bits (100), Expect = 0.001
Identities = 16/37 (43%), Positives = 22/37 (59%)
Query: 1032 EVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILR 1068
V K + + AG+++ALVG+SGSGKS IL
Sbjct: 22 TVEAVKGISFDIEAGETLALVGESGSGKSVTALSILG 58
|
Length = 534 |
| >gnl|CDD|172745 PRK14257, PRK14257, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 42.0 bits (98), Expect = 0.001
Identities = 28/79 (35%), Positives = 42/79 (53%), Gaps = 3/79 (3%)
Query: 999 RKTQVIGDIGEELTNVEGTIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSG 1058
+KTQV D+ +E N E+R +F Y +R + V+ D NL ++ K A +G SG G
Sbjct: 64 KKTQV--DLLKEDFNHANVFEIRNFNFWYMNRTKHVL-HDLNLDIKRNKVTAFIGPSGCG 120
Query: 1059 KSTVLSLILRFYDPTAGKA 1077
KST L + + D G +
Sbjct: 121 KSTFLRNLNQLNDLIEGTS 139
|
Length = 329 |
| >gnl|CDD|130355 TIGR01288, nodI, ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Score = 41.8 bits (98), Expect = 0.001
Identities = 20/59 (33%), Positives = 32/59 (54%), Gaps = 3/59 (5%)
Query: 1018 IELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGK 1076
I+L GV SY + V+ D + + G+ L+G +G+GKST+ ++L P GK
Sbjct: 5 IDLVGVSKSYGDK---VVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGK 60
|
This protein is required for normal nodulation by nitrogen-fixing root nodule bacteria such as Mesorhizobium loti. It is a member of the family of ABC transporter ATP binding proteins and works with NodJ to export a nodulation signal molecule. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans [Cellular processes, Other, Transport and binding proteins, Other]. Length = 303 |
| >gnl|CDD|183280 PRK11701, phnK, phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Score = 41.8 bits (99), Expect = 0.001
Identities = 14/40 (35%), Positives = 25/40 (62%)
Query: 1036 FKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAG 1075
+D + + G+ + +VG+SGSGK+T+L+ + P AG
Sbjct: 22 CRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAG 61
|
Length = 258 |
| >gnl|CDD|182852 PRK10938, PRK10938, putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Score = 42.7 bits (101), Expect = 0.001
Identities = 20/49 (40%), Positives = 28/49 (57%), Gaps = 3/49 (6%)
Query: 1018 IELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLI 1066
I L SY RP I + + +V G+ +VG +G+GKST+LSLI
Sbjct: 261 IVLNNGVVSYNDRP---ILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLI 306
|
Length = 490 |
| >gnl|CDD|233062 TIGR00630, uvra, excinuclease ABC, A subunit | Back alignment and domain information |
|---|
Score = 42.3 bits (100), Expect = 0.001
Identities = 33/100 (33%), Positives = 53/100 (53%), Gaps = 9/100 (9%)
Query: 521 LSGGQKQRIAISRAIVKNPS--ILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAH 577
LSGG+ QRI ++ I + + +LDE + L + L R+ +G T +VV H
Sbjct: 489 LSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNRRLINTLKRLRDLGNTLIVVEH 548
Query: 578 RLSTIRNADVI------AVVQGRKIVKTGSHEELISNPNS 611
TIR AD + A G ++V +G+ EE+++NP+S
Sbjct: 549 DEDTIRAADYVIDIGPGAGEHGGEVVASGTPEEILANPDS 588
|
This family is a member of the ABC transporter superfamily of proteins of which all members for which functions are known except the UvrA proteins are involved in the transport of material through membranes. UvrA orthologs are involved in the recognition of DNA damage as a step in nucleotide excision repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University) [DNA metabolism, DNA replication, recombination, and repair]. Length = 925 |
| >gnl|CDD|213266 cd03299, ABC_ModC_like, ATP-binding cassette domain similar to the molybdate transporter | Back alignment and domain information |
|---|
Score = 40.8 bits (96), Expect = 0.002
Identities = 16/40 (40%), Positives = 24/40 (60%)
Query: 1037 KDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGK 1076
K+ +L+V G ++G +GSGKS +L I F P +GK
Sbjct: 16 KNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGK 55
|
Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|181906 PRK09493, glnQ, glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 40.5 bits (95), Expect = 0.002
Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 7/51 (13%)
Query: 1018 IELRGV--HFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLI 1066
IE + V HF + + +L + G+ + ++G SGSGKST+L I
Sbjct: 2 IEFKNVSKHFG-----PTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCI 47
|
Length = 240 |
| >gnl|CDD|183226 PRK11607, potG, putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 41.7 bits (98), Expect = 0.002
Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 3/59 (5%)
Query: 1018 IELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGK 1076
+E+R + S+ + V D +L + G+ AL+G SG GKST+L ++ F PTAG+
Sbjct: 20 LEIRNLTKSFDGQHAV---DDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQ 75
|
Length = 377 |
| >gnl|CDD|132302 TIGR03258, PhnT, 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Score = 41.1 bits (96), Expect = 0.002
Identities = 18/57 (31%), Positives = 32/57 (56%), Gaps = 3/57 (5%)
Query: 1016 GTIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDP 1072
G I + + +Y + + D +L++ AG+ +AL+G+SG GK+T+L I F
Sbjct: 4 GGIRIDHLRVAYGAN---TVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKA 57
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. Length = 362 |
| >gnl|CDD|182331 PRK10247, PRK10247, putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Score = 40.5 bits (95), Expect = 0.002
Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
Query: 1018 IELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGK 1076
++L+ V + I + + +RAG+ + G SG GKST+L ++ PT+G
Sbjct: 8 LQLQNVGYLAGDAK---ILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGT 63
|
Length = 225 |
| >gnl|CDD|213235 cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of the bacitracin-resistance transporter | Back alignment and domain information |
|---|
Score = 40.3 bits (95), Expect = 0.002
Identities = 14/60 (23%), Positives = 31/60 (51%), Gaps = 3/60 (5%)
Query: 1018 IELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKA 1077
++ + +Y + + D +L V+ G+ +G +G+GK+T + +IL P +G+
Sbjct: 1 LKTNDLTKTYGKKRVL---DDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEI 57
|
The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. Length = 208 |
| >gnl|CDD|183244 PRK11629, lolD, lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 41.0 bits (96), Expect = 0.002
Identities = 17/41 (41%), Positives = 26/41 (63%)
Query: 1035 IFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAG 1075
+ + + + G+ MA+VG SGSGKST+L L+ PT+G
Sbjct: 24 VLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSG 64
|
Length = 233 |
| >gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 42.1 bits (99), Expect = 0.002
Identities = 42/224 (18%), Positives = 94/224 (41%), Gaps = 36/224 (16%)
Query: 410 GKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIK-GLDLKWLRQQIGLVNQ--- 465
G+I+ G GSG++ +++ + + GEI L+G +I L +++ + + +
Sbjct: 289 GEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRSPLDAVKKGMAYITESRR 348
Query: 466 EPALFAT-TIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERG------ 518
+ F +I +N+ I+R+ K + E E + E
Sbjct: 349 DNGFFPNFSIAQNM----------AISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLAL 398
Query: 519 ---------IQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVM-V 568
+LSGG +Q++ IS+ + P +++ DE T +D ++ + + + ++
Sbjct: 399 KCHSVNQNITELSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADD 458
Query: 569 GRTTVVVAHRLSTIRNADVIAVVQGRKIVKTGSHEELISNPNSA 612
G+ ++V+ L I I V + G ++++N +
Sbjct: 459 GKVILMVSSELPEI-----ITVCDRIAVFCEGRLTQILTNRDDM 497
|
Length = 510 |
| >gnl|CDD|236755 PRK10762, PRK10762, D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Score = 41.5 bits (98), Expect = 0.002
Identities = 20/58 (34%), Positives = 34/58 (58%), Gaps = 3/58 (5%)
Query: 1018 IELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAG 1075
++L+G+ ++P V L V G+ MALVG++G+GKST++ ++ Y AG
Sbjct: 5 LQLKGIDKAFPG---VKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAG 59
|
Length = 501 |
| >gnl|CDD|215558 PLN03073, PLN03073, ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Score = 41.8 bits (98), Expect = 0.002
Identities = 20/51 (39%), Positives = 30/51 (58%), Gaps = 2/51 (3%)
Query: 1025 FSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAG 1075
F YP P ++FK+ N + +A+VG +G GKST+L LI P++G
Sbjct: 516 FGYPGGP--LLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSG 564
|
Length = 718 |
| >gnl|CDD|237894 PRK15064, PRK15064, ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 41.8 bits (99), Expect = 0.002
Identities = 48/179 (26%), Positives = 71/179 (39%), Gaps = 64/179 (35%)
Query: 415 LVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQ-QIGL----------- 462
L+G +G GKST + ++ EP +G + LD L LRQ Q
Sbjct: 32 LIGANGCGKSTFMKILGGDLEPSAGNVSLD----PNERLGKLRQDQFAFEEFTVLDTVIM 87
Query: 463 -------VNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERF----- 510
V QE R+ I Y + + E+ + A L E +F
Sbjct: 88 GHTELWEVKQE--------RDRI-YALPEMSEEDGMKVADL-EV---------KFAEMDG 128
Query: 511 ---ETQVGE----RGI----------QLSGGQKQRIAISRAIVKNPSILLLDEATSALD 552
E + GE GI +++ G K R+ +++A+ NP ILLLDE T+ LD
Sbjct: 129 YTAEARAGELLLGVGIPEEQHYGLMSEVAPGWKLRVLLAQALFSNPDILLLDEPTNNLD 187
|
Length = 530 |
| >gnl|CDD|213194 cd03227, ABC_Class2, ATP-binding cassette domain of non-transporter proteins | Back alignment and domain information |
|---|
Score = 39.7 bits (93), Expect = 0.002
Identities = 21/76 (27%), Positives = 36/76 (47%), Gaps = 5/76 (6%)
Query: 519 IQLSGGQKQRIAISRAI----VKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVV 574
+QLSGG+K+ A++ + +K + +LDE LD ++ EA+ +V V+
Sbjct: 76 LQLSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILEHLVKGAQVI 135
Query: 575 VA-HRLSTIRNADVIA 589
V H AD +
Sbjct: 136 VITHLPELAELADKLI 151
|
ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterized by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins. Length = 162 |
| >gnl|CDD|213237 cd03270, ABC_UvrA_I, ATP-binding cassette domain I of the excision repair protein UvrA | Back alignment and domain information |
|---|
Score = 40.3 bits (95), Expect = 0.002
Identities = 63/235 (26%), Positives = 93/235 (39%), Gaps = 63/235 (26%)
Query: 405 LDIPAGKIVALVGGSGSGK-STVISLI-----ERFYEPLSGEILLDGNNIKGLDLKWLRQ 458
+DIP K+V + G SGSGK S I R+ E LS + RQ
Sbjct: 16 VDIPRNKLVVITGVSGSGKSSLAFDTIYAEGQRRYVESLSA---------------YARQ 60
Query: 459 QIGLVNQ---------EPALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPER 509
+G +++ PA+ I + +T+ +T E ++ L R
Sbjct: 61 FLGQMDKPDVDSIEGLSPAI---AIDQKTTSRNPRSTVGTVT------EIYDYLRLLFAR 111
Query: 510 --------FETQVG------ERGIQ-LSGGQKQRIAISRAIVKNPS--ILLLDEATSALD 552
F VG R LSGG+ QRI ++ I + + +LDE + L
Sbjct: 112 VGIRERLGFLVDVGLGYLTLSRSAPTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLH 171
Query: 553 AESENSVQEALDRVM-VGRTTVVVAHRLSTIRNADVI------AVVQGRKIVKTG 600
+ + E L R+ +G T +VV H TIR AD + A V G +IV G
Sbjct: 172 PRDNDRLIETLKRLRDLGNTVLVVEHDEDTIRAADHVIDIGPGAGVHGGEIVAQG 226
|
Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. Length = 226 |
| >gnl|CDD|188099 TIGR00972, 3a0107s01c2, phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 40.4 bits (95), Expect = 0.003
Identities = 20/58 (34%), Positives = 29/58 (50%), Gaps = 3/58 (5%)
Query: 1018 IELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAG 1075
IE+ ++ Y E K+ NL + + AL+G SG GKST+L + R D G
Sbjct: 2 IEIENLNLFYG---EKEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPG 56
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters [Transport and binding proteins, Anions]. Length = 247 |
| >gnl|CDD|130254 TIGR01186, proV, glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Score = 40.6 bits (95), Expect = 0.003
Identities = 16/40 (40%), Positives = 26/40 (65%)
Query: 1037 KDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGK 1076
D +L + G+ ++G SGSGKST + ++ R +PTAG+
Sbjct: 10 NDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQ 49
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lactis functionally complements an E.coli proU mutant. The comlementing locus is similar to a opuA locus in B.sutlis. This clarifies the differences in nomenclature [Transport and binding proteins, Amino acids, peptides and amines]. Length = 363 |
| >gnl|CDD|226927 COG4555, NatA, ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 40.5 bits (95), Expect = 0.003
Identities = 18/60 (30%), Positives = 35/60 (58%), Gaps = 2/60 (3%)
Query: 1018 IELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKA 1077
+E+ + SY S+ + V +D + + G+ L+G++G+GK+T+L +I P +GK
Sbjct: 2 LEVTDLTKSYGSKVQAV--RDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKV 59
|
Length = 245 |
| >gnl|CDD|226970 COG4619, COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 40.2 bits (94), Expect = 0.003
Identities = 21/59 (35%), Positives = 33/59 (55%), Gaps = 3/59 (5%)
Query: 1017 TIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAG 1075
+EL+ V + I + +L VRAG+ +A+ G SG GKST+L ++ PT+G
Sbjct: 3 LLELKQVGYLAGDAK---ILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSG 58
|
Length = 223 |
| >gnl|CDD|223473 COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 40.3 bits (95), Expect = 0.003
Identities = 21/64 (32%), Positives = 35/64 (54%), Gaps = 4/64 (6%)
Query: 1015 EGTIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRF--YDP 1072
+E++ +H + E I K NL V+ G+ A++G +GSGKST+ I+ Y+
Sbjct: 1 MMMLEIKDLHVEVEGKKE--ILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEV 58
Query: 1073 TAGK 1076
T G+
Sbjct: 59 TEGE 62
|
Length = 251 |
| >gnl|CDD|226961 COG4598, HisP, ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 39.7 bits (93), Expect = 0.004
Identities = 23/62 (37%), Positives = 34/62 (54%), Gaps = 3/62 (4%)
Query: 1015 EGTIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTA 1074
E +E+ +H Y EV+ K +L+ AG ++++G SGSGKST L I P+A
Sbjct: 4 ENALEVEDLHKRYGEH-EVL--KGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSA 60
Query: 1075 GK 1076
G
Sbjct: 61 GS 62
|
Length = 256 |
| >gnl|CDD|236689 PRK10419, nikE, nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Score = 40.1 bits (94), Expect = 0.004
Identities = 14/46 (30%), Positives = 29/46 (63%)
Query: 1030 RPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAG 1075
+ + +L +++G+++AL+G+SG GKST+ L++ P+ G
Sbjct: 22 HQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQG 67
|
Length = 268 |
| >gnl|CDD|237421 PRK13539, PRK13539, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 39.5 bits (93), Expect = 0.004
Identities = 18/47 (38%), Positives = 27/47 (57%)
Query: 1030 RPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGK 1076
R V+F + + AG+++ L G +GSGK+T+L LI P AG
Sbjct: 12 RGGRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGT 58
|
Length = 207 |
| >gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Score = 40.8 bits (96), Expect = 0.004
Identities = 20/32 (62%), Positives = 27/32 (84%), Gaps = 2/32 (6%)
Query: 1038 DFNLKVRAGKSMALVGQSGSGKS-TVLSLILR 1068
D +L++ AG+++ALVG+SGSGKS T LS ILR
Sbjct: 27 DVSLQIEAGETLALVGESGSGKSVTALS-ILR 57
|
Length = 529 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1077 | |||
| KOG0055 | 1228 | consensus Multidrug/pheromone exporter, ABC superf | 100.0 | |
| KOG0054 | 1381 | consensus Multidrug resistance-associated protein/ | 100.0 | |
| PTZ00265 | 1466 | multidrug resistance protein (mdr1); Provisional | 100.0 | |
| PLN03130 | 1622 | ABC transporter C family member; Provisional | 100.0 | |
| PLN03232 | 1495 | ABC transporter C family member; Provisional | 100.0 | |
| TIGR00957 | 1522 | MRP_assoc_pro multi drug resistance-associated pro | 100.0 | |
| PTZ00243 | 1560 | ABC transporter; Provisional | 100.0 | |
| TIGR01271 | 1490 | CFTR_protein cystic fibrosis transmembrane conduct | 100.0 | |
| KOG0058 | 716 | consensus Peptide exporter, ABC superfamily [Intra | 100.0 | |
| KOG0055 | 1228 | consensus Multidrug/pheromone exporter, ABC superf | 100.0 | |
| COG2274 | 709 | SunT ABC-type bacteriocin/lantibiotic exporters, c | 100.0 | |
| PRK11174 | 588 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| PTZ00265 | 1466 | multidrug resistance protein (mdr1); Provisional | 100.0 | |
| TIGR00958 | 711 | 3a01208 Conjugate Transporter-2 (CT2) Family prote | 100.0 | |
| COG1132 | 567 | MdlB ABC-type multidrug transport system, ATPase a | 100.0 | |
| TIGR03797 | 686 | NHPM_micro_ABC2 NHPM bacteriocin system ABC transp | 100.0 | |
| TIGR03796 | 710 | NHPM_micro_ABC1 NHPM bacteriocin system ABC transp | 100.0 | |
| TIGR01193 | 708 | bacteriocin_ABC ABC-type bacteriocin transporter. | 100.0 | |
| PRK11160 | 574 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| TIGR03375 | 694 | type_I_sec_LssB type I secretion system ATPase, Ls | 100.0 | |
| COG4988 | 559 | CydD ABC-type transport system involved in cytochr | 100.0 | |
| PRK11176 | 582 | lipid transporter ATP-binding/permease protein; Pr | 100.0 | |
| TIGR01846 | 694 | type_I_sec_HlyB type I secretion system ABC transp | 100.0 | |
| PRK10790 | 592 | putative multidrug transporter membrane\ATP-bindin | 100.0 | |
| TIGR02203 | 571 | MsbA_lipidA lipid A export permease/ATP-binding pr | 100.0 | |
| PRK13657 | 588 | cyclic beta-1,2-glucan ABC transporter; Provisiona | 100.0 | |
| TIGR01192 | 585 | chvA glucan exporter ATP-binding protein. This mod | 100.0 | |
| PRK10789 | 569 | putative multidrug transporter membrane\ATP-bindin | 100.0 | |
| TIGR02868 | 529 | CydC thiol reductant ABC exporter, CydC subunit. T | 100.0 | |
| KOG0057 | 591 | consensus Mitochondrial Fe/S cluster exporter, ABC | 100.0 | |
| TIGR02204 | 576 | MsbA_rel ABC transporter, permease/ATP-binding pro | 100.0 | |
| KOG0056 | 790 | consensus Heavy metal exporter HMT1, ABC superfami | 100.0 | |
| TIGR00957 | 1522 | MRP_assoc_pro multi drug resistance-associated pro | 100.0 | |
| COG4987 | 573 | CydC ABC-type transport system involved in cytochr | 100.0 | |
| TIGR02857 | 529 | CydD thiol reductant ABC exporter, CydD subunit. U | 100.0 | |
| PLN03130 | 1622 | ABC transporter C family member; Provisional | 100.0 | |
| PTZ00243 | 1560 | ABC transporter; Provisional | 100.0 | |
| TIGR01842 | 544 | type_I_sec_PrtD type I secretion system ABC transp | 100.0 | |
| PLN03232 | 1495 | ABC transporter C family member; Provisional | 100.0 | |
| KOG0054 | 1381 | consensus Multidrug resistance-associated protein/ | 100.0 | |
| TIGR01271 | 1490 | CFTR_protein cystic fibrosis transmembrane conduct | 100.0 | |
| TIGR01194 | 555 | cyc_pep_trnsptr cyclic peptide transporter. This m | 100.0 | |
| COG5265 | 497 | ATM1 ABC-type transport system involved in Fe-S cl | 100.0 | |
| COG4618 | 580 | ArpD ABC-type protease/lipase transport system, AT | 100.0 | |
| PRK10522 | 547 | multidrug transporter membrane component/ATP-bindi | 100.0 | |
| TIGR00954 | 659 | 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FA | 100.0 | |
| KOG0058 | 716 | consensus Peptide exporter, ABC superfamily [Intra | 100.0 | |
| COG1126 | 240 | GlnQ ABC-type polar amino acid transport system, A | 100.0 | |
| COG1135 | 339 | AbcC ABC-type metal ion transport system, ATPase c | 100.0 | |
| COG1125 | 309 | OpuBA ABC-type proline/glycine betaine transport s | 100.0 | |
| COG1117 | 253 | PstB ABC-type phosphate transport system, ATPase c | 100.0 | |
| cd03289 | 275 | ABCC_CFTR2 The CFTR subfamily domain 2. The cystic | 100.0 | |
| COG1123 | 539 | ATPase components of various ABC-type transport sy | 100.0 | |
| PRK14257 | 329 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG4615 | 546 | PvdE ABC-type siderophore export system, fused ATP | 100.0 | |
| COG1127 | 263 | Ttg2A ABC-type transport system involved in resist | 100.0 | |
| COG1120 | 258 | FepC ABC-type cobalamin/Fe3+-siderophores transpor | 100.0 | |
| cd03252 | 237 | ABCC_Hemolysin The ABC-transporter hemolysin B is | 100.0 | |
| TIGR00958 | 711 | 3a01208 Conjugate Transporter-2 (CT2) Family prote | 100.0 | |
| COG3839 | 338 | MalK ABC-type sugar transport systems, ATPase comp | 100.0 | |
| PRK13549 | 506 | xylose transporter ATP-binding subunit; Provisiona | 100.0 | |
| COG1136 | 226 | SalX ABC-type antimicrobial peptide transport syst | 100.0 | |
| COG3842 | 352 | PotA ABC-type spermidine/putrescine transport syst | 100.0 | |
| cd03288 | 257 | ABCC_SUR2 The SUR domain 2. The sulfonylurea recep | 100.0 | |
| COG3638 | 258 | ABC-type phosphate/phosphonate transport system, A | 100.0 | |
| COG1116 | 248 | TauB ABC-type nitrate/sulfonate/bicarbonate transp | 100.0 | |
| TIGR02314 | 343 | ABC_MetN D-methionine ABC transporter, ATP-binding | 100.0 | |
| cd03251 | 234 | ABCC_MsbA MsbA is an essential ABC transporter, cl | 100.0 | |
| COG2274 | 709 | SunT ABC-type bacteriocin/lantibiotic exporters, c | 100.0 | |
| COG1124 | 252 | DppF ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| cd03254 | 229 | ABCC_Glucan_exporter_like Glucan exporter ATP-bind | 100.0 | |
| cd03253 | 236 | ABCC_ATM1_transporter ATM1 is an ABC transporter t | 100.0 | |
| TIGR01257 | 2272 | rim_protein retinal-specific rim ABC transporter. | 100.0 | |
| cd03249 | 238 | ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) | 100.0 | |
| COG2884 | 223 | FtsE Predicted ATPase involved in cell division [C | 100.0 | |
| PRK10261 | 623 | glutathione transporter ATP-binding protein; Provi | 100.0 | |
| COG1121 | 254 | ZnuC ABC-type Mn/Zn transport systems, ATPase comp | 100.0 | |
| COG3840 | 231 | ThiQ ABC-type thiamine transport system, ATPase co | 100.0 | |
| cd03244 | 221 | ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. | 100.0 | |
| PRK09700 | 510 | D-allose transporter ATP-binding protein; Provisio | 100.0 | |
| COG1122 | 235 | CbiO ABC-type cobalt transport system, ATPase comp | 100.0 | |
| PRK10982 | 491 | galactose/methyl galaxtoside transporter ATP-bindi | 100.0 | |
| TIGR02633 | 500 | xylG D-xylose ABC transporter, ATP-binding protein | 100.0 | |
| COG1118 | 345 | CysA ABC-type sulfate/molybdate transport systems, | 100.0 | |
| cd03245 | 220 | ABCC_bacteriocin_exporters ABC-type bacteriocin ex | 100.0 | |
| PRK13631 | 320 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK15134 | 529 | microcin C ABC transporter ATP-binding protein Yej | 100.0 | |
| PRK10762 | 501 | D-ribose transporter ATP binding protein; Provisio | 100.0 | |
| TIGR03269 | 520 | met_CoM_red_A2 methyl coenzyme M reductase system, | 100.0 | |
| TIGR02868 | 529 | CydC thiol reductant ABC exporter, CydC subunit. T | 100.0 | |
| PRK10938 | 490 | putative molybdenum transport ATP-binding protein | 100.0 | |
| PRK11288 | 501 | araG L-arabinose transporter ATP-binding protein; | 100.0 | |
| PRK11650 | 356 | ugpC glycerol-3-phosphate transporter ATP-binding | 100.0 | |
| cd03248 | 226 | ABCC_TAP TAP, the Transporter Associated with Anti | 100.0 | |
| PRK11432 | 351 | fbpC ferric transporter ATP-binding subunit; Provi | 100.0 | |
| cd03261 | 235 | ABC_Org_Solvent_Resistant ABC (ATP-binding cassett | 100.0 | |
| TIGR00956 | 1394 | 3a01205 Pleiotropic Drug Resistance (PDR) Family p | 100.0 | |
| TIGR01186 | 363 | proV glycine betaine/L-proline transport ATP bindi | 100.0 | |
| TIGR03265 | 353 | PhnT2 putative 2-aminoethylphosphonate ABC transpo | 100.0 | |
| PRK11153 | 343 | metN DL-methionine transporter ATP-binding subunit | 100.0 | |
| PRK13650 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11160 | 574 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| PRK15064 | 530 | ABC transporter ATP-binding protein; Provisional | 100.0 | |
| cd03260 | 227 | ABC_PstB_phosphate_transporter Phosphate uptake is | 100.0 | |
| PRK14269 | 246 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13637 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK09452 | 375 | potA putrescine/spermidine ABC transporter ATPase | 100.0 | |
| PRK13643 | 288 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR03258 | 362 | PhnT 2-aminoethylphosphonate ABC transport system, | 100.0 | |
| PRK11819 | 556 | putative ABC transporter ATP-binding protein; Revi | 100.0 | |
| TIGR03719 | 552 | ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa | 100.0 | |
| PRK14273 | 254 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03219 | 236 | ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans | 100.0 | |
| cd03369 | 207 | ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-ty | 100.0 | |
| COG4178 | 604 | ABC-type uncharacterized transport system, permeas | 100.0 | |
| PRK10851 | 353 | sulfate/thiosulfate transporter subunit; Provision | 100.0 | |
| TIGR00972 | 247 | 3a0107s01c2 phosphate ABC transporter, ATP-binding | 100.0 | |
| cd03296 | 239 | ABC_CysA_sulfate_importer Part of the ABC transpor | 100.0 | |
| TIGR01193 | 708 | bacteriocin_ABC ABC-type bacteriocin transporter. | 100.0 | |
| PRK14250 | 241 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10744 | 260 | pstB phosphate transporter ATP-binding protein; Pr | 100.0 | |
| PRK13646 | 286 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03224 | 222 | ABC_TM1139_LivF_branched LivF (TM1139) is part of | 100.0 | |
| PRK13634 | 290 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13647 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03295 | 242 | ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin | 100.0 | |
| PRK14242 | 253 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK15079 | 331 | oligopeptide ABC transporter ATP-binding protein O | 100.0 | |
| PRK11000 | 369 | maltose/maltodextrin transporter ATP-binding prote | 100.0 | |
| COG4175 | 386 | ProV ABC-type proline/glycine betaine transport sy | 100.0 | |
| PRK13537 | 306 | nodulation ABC transporter NodI; Provisional | 100.0 | |
| PRK11607 | 377 | potG putrescine transporter ATP-binding subunit; P | 100.0 | |
| cd03258 | 233 | ABC_MetN_methionine_transporter MetN (also known a | 100.0 | |
| COG4555 | 245 | NatA ABC-type Na+ transport system, ATPase compone | 100.0 | |
| PRK13651 | 305 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| COG0410 | 237 | LivF ABC-type branched-chain amino acid transport | 100.0 | |
| cd03263 | 220 | ABC_subfamily_A The ABCA subfamily mediates the tr | 100.0 | |
| TIGR03797 | 686 | NHPM_micro_ABC2 NHPM bacteriocin system ABC transp | 100.0 | |
| cd03256 | 241 | ABC_PhnC_transporter ABC-type phosphate/phosphonat | 100.0 | |
| PRK14268 | 258 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03259 | 213 | ABC_Carb_Solutes_like ABC Carbohydrate and Solute | 100.0 | |
| PRK09536 | 402 | btuD corrinoid ABC transporter ATPase; Reviewed | 100.0 | |
| TIGR00960 | 216 | 3a0501s02 Type II (General) Secretory Pathway (IIS | 100.0 | |
| TIGR02315 | 243 | ABC_phnC phosphonate ABC transporter, ATP-binding | 100.0 | |
| cd03294 | 269 | ABC_Pro_Gly_Bertaine This family comprises the gly | 100.0 | |
| PRK14247 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR03864 | 236 | PQQ_ABC_ATP ABC transporter, ATP-binding subunit, | 100.0 | |
| PRK14235 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14259 | 269 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10070 | 400 | glycine betaine transporter ATP-binding subunit; P | 100.0 | |
| PRK09473 | 330 | oppD oligopeptide transporter ATP-binding componen | 100.0 | |
| PRK13635 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03218 | 232 | ABC_YhbG The ABC transporters belonging to the Yhb | 100.0 | |
| PRK14248 | 268 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14267 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13636 | 283 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11174 | 588 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| PRK14274 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03266 | 218 | ABC_NatA_sodium_exporter NatA is the ATPase compon | 100.0 | |
| TIGR03415 | 382 | ABC_choXWV_ATP choline ABC transporter, ATP-bindin | 100.0 | |
| PRK11629 | 233 | lolD lipoprotein transporter ATP-binding subunit; | 100.0 | |
| COG1132 | 567 | MdlB ABC-type multidrug transport system, ATPase a | 100.0 | |
| PRK11831 | 269 | putative ABC transporter ATP-binding protein YrbF; | 100.0 | |
| PRK13642 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14240 | 250 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| TIGR03375 | 694 | type_I_sec_LssB type I secretion system ATPase, Ls | 100.0 | |
| cd03255 | 218 | ABC_MJ0796_Lo1CDE_FtsE This family is comprised of | 100.0 | |
| PRK14249 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03265 | 220 | ABC_DrrA DrrA is the ATP-binding protein component | 100.0 | |
| PRK14238 | 271 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK13632 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR01846 | 694 | type_I_sec_HlyB type I secretion system ABC transp | 100.0 | |
| TIGR03796 | 710 | NHPM_micro_ABC1 NHPM bacteriocin system ABC transp | 100.0 | |
| PRK14245 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03291 | 282 | ABCC_CFTR1 The CFTR subfamily domain 1. The cystic | 100.0 | |
| TIGR02857 | 529 | CydD thiol reductant ABC exporter, CydD subunit. U | 100.0 | |
| PRK14251 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13644 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14237 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| TIGR02769 | 265 | nickel_nikE nickel import ATP-binding protein NikE | 100.0 | |
| PRK11022 | 326 | dppD dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| PRK11308 | 327 | dppF dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| TIGR02211 | 221 | LolD_lipo_ex lipoprotein releasing system, ATP-bin | 100.0 | |
| PRK11614 | 237 | livF leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| PRK14236 | 272 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14261 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR03410 | 230 | urea_trans_UrtE urea ABC transporter, ATP-binding | 100.0 | |
| PRK11264 | 250 | putative amino-acid ABC transporter ATP-binding pr | 100.0 | |
| PRK14256 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03264 | 211 | ABC_drug_resistance_like ABC-type multidrug transp | 100.0 | |
| PRK13536 | 340 | nodulation factor exporter subunit NodI; Provision | 100.0 | |
| PRK13641 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR01288 | 303 | nodI ATP-binding ABC transporter family nodulation | 100.0 | |
| cd03247 | 178 | ABCC_cytochrome_bd The CYD subfamily implicated in | 100.0 | |
| PRK13645 | 289 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK09493 | 240 | glnQ glutamine ABC transporter ATP-binding protein | 100.0 | |
| PRK13652 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03250 | 204 | ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. | 100.0 | |
| PRK13648 | 269 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14239 | 252 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| TIGR03005 | 252 | ectoine_ehuA ectoine/hydroxyectoine ABC transporte | 100.0 | |
| PRK13640 | 282 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13649 | 280 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03226 | 205 | ABC_cobalt_CbiO_domain2 Domain II of the ABC compo | 100.0 | |
| PRK14270 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14253 | 249 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03268 | 208 | ABC_BcrA_bacitracin_resist The BcrA subfamily repr | 100.0 | |
| PRK14244 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR03411 | 242 | urea_trans_UrtD urea ABC transporter, ATP-binding | 100.0 | |
| cd03301 | 213 | ABC_MalK_N The N-terminal ATPase domain of the mal | 100.0 | |
| PRK14271 | 276 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10895 | 241 | lipopolysaccharide ABC transporter ATP-binding pro | 100.0 | |
| PRK14262 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13633 | 280 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| TIGR03522 | 301 | GldA_ABC_ATP gliding motility-associated ABC trans | 100.0 | |
| PRK13638 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14243 | 264 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK10575 | 265 | iron-hydroxamate transporter ATP-binding subunit; | 100.0 | |
| cd03293 | 220 | ABC_NrtD_SsuB_transporters NrtD and SsuB are the A | 100.0 | |
| PRK14272 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10619 | 257 | histidine/lysine/arginine/ornithine transporter su | 100.0 | |
| COG1131 | 293 | CcmA ABC-type multidrug transport system, ATPase c | 100.0 | |
| PRK14275 | 286 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG1137 | 243 | YhbG ABC-type (unclassified) transport system, ATP | 100.0 | |
| PRK13548 | 258 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| PRK11231 | 255 | fecE iron-dicitrate transporter ATP-binding subuni | 100.0 | |
| cd03257 | 228 | ABC_NikE_OppD_transporters The ABC transporter sub | 100.0 | |
| PRK11247 | 257 | ssuB aliphatic sulfonates transport ATP-binding su | 100.0 | |
| cd03225 | 211 | ABC_cobalt_CbiO_domain1 Domain I of the ABC compon | 100.0 | |
| COG0411 | 250 | LivG ABC-type branched-chain amino acid transport | 100.0 | |
| PRK14254 | 285 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11124 | 242 | artP arginine transporter ATP-binding subunit; Pro | 100.0 | |
| cd03246 | 173 | ABCC_Protease_Secretion This family represents the | 100.0 | |
| cd03292 | 214 | ABC_FtsE_transporter FtsE is a hydrophilic nucleot | 100.0 | |
| PRK11300 | 255 | livG leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| PRK13639 | 275 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK10636 | 638 | putative ABC transporter ATP-binding protein; Prov | 100.0 | |
| PRK15093 | 330 | antimicrobial peptide ABC transporter ATP-binding | 100.0 | |
| COG4172 | 534 | ABC-type uncharacterized transport system, duplica | 100.0 | |
| PRK10253 | 265 | iron-enterobactin transporter ATP-binding protein; | 100.0 | |
| PRK10247 | 225 | putative ABC transporter ATP-binding protein YbbL; | 100.0 | |
| PRK14252 | 265 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14241 | 258 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| TIGR02673 | 214 | FtsE cell division ATP-binding protein FtsE. This | 100.0 | |
| TIGR02203 | 571 | MsbA_lipidA lipid A export permease/ATP-binding pr | 100.0 | |
| PRK14260 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PLN03140 | 1470 | ABC transporter G family member; Provisional | 100.0 | |
| PRK14266 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03290 | 218 | ABCC_SUR1_N The SUR domain 1. The sulfonylurea rec | 100.0 | |
| cd03269 | 210 | ABC_putative_ATPase This subfamily is involved in | 100.0 | |
| PRK10584 | 228 | putative ABC transporter ATP-binding protein YbbA; | 100.0 | |
| PRK10908 | 222 | cell division protein FtsE; Provisional | 100.0 | |
| PRK11701 | 258 | phnK phosphonate C-P lyase system protein PhnK; Pr | 100.0 | |
| PRK11144 | 352 | modC molybdate transporter ATP-binding protein; Pr | 100.0 | |
| TIGR01192 | 585 | chvA glucan exporter ATP-binding protein. This mod | 100.0 | |
| PRK10790 | 592 | putative multidrug transporter membrane\ATP-bindin | 100.0 | |
| TIGR03873 | 256 | F420-0_ABC_ATP proposed F420-0 ABC transporter, AT | 100.0 | |
| COG0444 | 316 | DppD ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| PRK14255 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14265 | 274 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR00968 | 237 | 3a0106s01 sulfate ABC transporter, ATP-binding pro | 100.0 | |
| PRK14258 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR01188 | 302 | drrA daunorubicin resistance ABC transporter ATP-b | 100.0 | |
| cd03262 | 213 | ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP- | 100.0 | |
| cd03235 | 213 | ABC_Metallic_Cations ABC component of the metal-ty | 100.0 | |
| PRK14246 | 257 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11176 | 582 | lipid transporter ATP-binding/permease protein; Pr | 100.0 | |
| PRK14264 | 305 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03300 | 232 | ABC_PotA_N PotA is an ABC-type transporter and the | 100.0 | |
| cd03298 | 211 | ABC_ThiQ_thiamine_transporter ABC-type thiamine tr | 100.0 | |
| PRK14263 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13547 | 272 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| PRK15112 | 267 | antimicrobial peptide ABC system ATP-binding prote | 100.0 | |
| COG1123 | 539 | ATPase components of various ABC-type transport sy | 100.0 | |
| PRK10771 | 232 | thiQ thiamine transporter ATP-binding subunit; Pro | 100.0 | |
| TIGR01194 | 555 | cyc_pep_trnsptr cyclic peptide transporter. This m | 100.0 | |
| PRK09984 | 262 | phosphonate/organophosphate ester transporter subu | 100.0 | |
| PRK10789 | 569 | putative multidrug transporter membrane\ATP-bindin | 100.0 | |
| TIGR01978 | 243 | sufC FeS assembly ATPase SufC. SufC is part of the | 100.0 | |
| TIGR02142 | 354 | modC_ABC molybdenum ABC transporter, ATP-binding p | 100.0 | |
| cd03299 | 235 | ABC_ModC_like Archeal protein closely related to M | 100.0 | |
| COG4598 | 256 | HisP ABC-type histidine transport system, ATPase c | 100.0 | |
| TIGR02204 | 576 | MsbA_rel ABC transporter, permease/ATP-binding pro | 100.0 | |
| PRK11248 | 255 | tauB taurine transporter ATP-binding subunit; Prov | 100.0 | |
| cd03234 | 226 | ABCG_White The White subfamily represents ABC tran | 100.0 | |
| PRK10419 | 268 | nikE nickel transporter ATP-binding protein NikE; | 100.0 | |
| TIGR01277 | 213 | thiQ thiamine ABC transporter, ATP-binding protein | 100.0 | |
| cd03228 | 171 | ABCC_MRP_Like The MRP (Mutidrug Resistance Protein | 100.0 | |
| COG4619 | 223 | ABC-type uncharacterized transport system, ATPase | 100.0 | |
| cd03233 | 202 | ABC_PDR_domain1 The pleiotropic drug resistance (P | 100.0 | |
| cd03230 | 173 | ABC_DR_subfamily_A This family of ATP-binding prot | 100.0 | |
| PRK11147 | 635 | ABC transporter ATPase component; Reviewed | 100.0 | |
| COG0488 | 530 | Uup ATPase components of ABC transporters with dup | 100.0 | |
| cd03229 | 178 | ABC_Class3 This class is comprised of all BPD (Bin | 100.0 | |
| TIGR02323 | 253 | CP_lyasePhnK phosphonate C-P lyase system protein | 100.0 | |
| COG4559 | 259 | ABC-type hemin transport system, ATPase component | 100.0 | |
| TIGR02982 | 220 | heterocyst_DevA ABC exporter ATP-binding subunit, | 100.0 | |
| cd03297 | 214 | ABC_ModC_molybdenum_transporter ModC is an ABC-typ | 100.0 | |
| PRK10418 | 254 | nikD nickel transporter ATP-binding protein NikD; | 100.0 | |
| cd03213 | 194 | ABCG_EPDR ABCG transporters are involved in eye pi | 100.0 | |
| PLN03073 | 718 | ABC transporter F family; Provisional | 100.0 | |
| COG4181 | 228 | Predicted ABC-type transport system involved in ly | 100.0 | |
| TIGR03740 | 223 | galliderm_ABC gallidermin-class lantibiotic protec | 100.0 | |
| cd03217 | 200 | ABC_FeS_Assembly ABC-type transport system involve | 100.0 | |
| COG4172 | 534 | ABC-type uncharacterized transport system, duplica | 100.0 | |
| cd03232 | 192 | ABC_PDR_domain2 The pleiotropic drug resistance-li | 100.0 | |
| cd03223 | 166 | ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass | 100.0 | |
| cd03215 | 182 | ABC_Carb_Monos_II This family represents domain II | 100.0 | |
| PRK13657 | 588 | cyclic beta-1,2-glucan ABC transporter; Provisiona | 100.0 | |
| PRK10261 | 623 | glutathione transporter ATP-binding protein; Provi | 100.0 | |
| TIGR02770 | 230 | nickel_nikD nickel import ATP-binding protein NikD | 100.0 | |
| CHL00131 | 252 | ycf16 sulfate ABC transporter protein; Validated | 100.0 | |
| TIGR03608 | 206 | L_ocin_972_ABC putative bacteriocin export ABC tra | 100.0 | |
| PRK09580 | 248 | sufC cysteine desulfurase ATPase component; Review | 100.0 | |
| PRK15056 | 272 | manganese/iron transporter ATP-binding protein; Pr | 100.0 | |
| PRK03695 | 248 | vitamin B12-transporter ATPase; Provisional | 100.0 | |
| TIGR01842 | 544 | type_I_sec_PrtD type I secretion system ABC transp | 100.0 | |
| cd03214 | 180 | ABC_Iron-Siderophores_B12_Hemin ABC transporters, | 100.0 | |
| cd03267 | 236 | ABC_NatA_like Similar in sequence to NatA, this is | 100.0 | |
| COG4525 | 259 | TauB ABC-type taurine transport system, ATPase com | 100.0 | |
| COG4608 | 268 | AppF ABC-type oligopeptide transport system, ATPas | 100.0 | |
| cd03216 | 163 | ABC_Carb_Monos_I This family represents the domain | 100.0 | |
| PRK15439 | 510 | autoinducer 2 ABC transporter ATP-binding protein | 100.0 | |
| PRK09544 | 251 | znuC high-affinity zinc transporter ATPase; Review | 100.0 | |
| COG4604 | 252 | CeuD ABC-type enterochelin transport system, ATPas | 100.0 | |
| cd03231 | 201 | ABC_CcmA_heme_exporter CcmA, the ATP-binding compo | 100.0 | |
| TIGR01184 | 230 | ntrCD nitrate transport ATP-binding subunits C and | 100.0 | |
| COG1129 | 500 | MglA ABC-type sugar transport system, ATPase compo | 100.0 | |
| PRK13538 | 204 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| COG4161 | 242 | ArtP ABC-type arginine transport system, ATPase co | 100.0 | |
| PRK13540 | 200 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| PRK15134 | 529 | microcin C ABC transporter ATP-binding protein Yej | 100.0 | |
| TIGR00955 | 617 | 3a01204 The Eye Pigment Precursor Transporter (EPP | 100.0 | |
| PRK13546 | 264 | teichoic acids export protein ATP-binding subunit; | 100.0 | |
| PRK13543 | 214 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| COG4148 | 352 | ModC ABC-type molybdate transport system, ATPase c | 100.0 | |
| PRK10522 | 547 | multidrug transporter membrane component/ATP-bindi | 100.0 | |
| TIGR01257 | 2272 | rim_protein retinal-specific rim ABC transporter. | 100.0 | |
| TIGR02324 | 224 | CP_lyasePhnL phosphonate C-P lyase system protein | 100.0 | |
| PRK13545 | 549 | tagH teichoic acids export protein ATP-binding sub | 100.0 | |
| TIGR03269 | 520 | met_CoM_red_A2 methyl coenzyme M reductase system, | 100.0 | |
| PRK13539 | 207 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| PRK13549 | 506 | xylose transporter ATP-binding subunit; Provisiona | 100.0 | |
| TIGR01189 | 198 | ccmA heme ABC exporter, ATP-binding protein CcmA. | 100.0 | |
| PLN03211 | 659 | ABC transporter G-25; Provisional | 100.0 | |
| cd03220 | 224 | ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transpo | 100.0 | |
| PRK13409 | 590 | putative ATPase RIL; Provisional | 100.0 | |
| PRK10535 | 648 | macrolide transporter ATP-binding /permease protei | 100.0 | |
| COG3845 | 501 | ABC-type uncharacterized transport systems, ATPase | 100.0 | |
| TIGR01166 | 190 | cbiO cobalt transport protein ATP-binding subunit. | 100.0 | |
| TIGR03771 | 223 | anch_rpt_ABC anchored repeat-type ABC transporter, | 100.0 | |
| TIGR00954 | 659 | 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FA | 100.0 | |
| TIGR02633 | 500 | xylG D-xylose ABC transporter, ATP-binding protein | 100.0 | |
| PRK09700 | 510 | D-allose transporter ATP-binding protein; Provisio | 100.0 | |
| TIGR01187 | 325 | potA spermidine/putrescine ABC transporter ATP-bin | 100.0 | |
| COG4152 | 300 | ABC-type uncharacterized transport system, ATPase | 100.0 | |
| COG4988 | 559 | CydD ABC-type transport system involved in cytochr | 100.0 | |
| PRK13541 | 195 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| COG1101 | 263 | PhnK ABC-type uncharacterized transport system, AT | 100.0 | |
| KOG0060 | 659 | consensus Long-chain acyl-CoA transporter, ABC sup | 100.0 | |
| PRK10762 | 501 | D-ribose transporter ATP binding protein; Provisio | 100.0 | |
| PRK11288 | 501 | araG L-arabinose transporter ATP-binding protein; | 100.0 | |
| cd03221 | 144 | ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is | 100.0 | |
| TIGR00956 | 1394 | 3a01205 Pleiotropic Drug Resistance (PDR) Family p | 100.0 | |
| PRK15439 | 510 | autoinducer 2 ABC transporter ATP-binding protein | 100.0 | |
| PRK15177 | 213 | Vi polysaccharide export ATP-binding protein VexC; | 100.0 | |
| cd03237 | 246 | ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 o | 100.0 | |
| COG4987 | 573 | CydC ABC-type transport system involved in cytochr | 100.0 | |
| PRK15064 | 530 | ABC transporter ATP-binding protein; Provisional | 100.0 | |
| cd03236 | 255 | ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 o | 100.0 | |
| COG1119 | 257 | ModF ABC-type molybdenum transport system, ATPase | 100.0 | |
| PRK10982 | 491 | galactose/methyl galaxtoside transporter ATP-bindi | 100.0 | |
| COG4167 | 267 | SapF ABC-type antimicrobial peptide transport syst | 100.0 | |
| KOG0056 | 790 | consensus Heavy metal exporter HMT1, ABC superfami | 100.0 | |
| PRK10938 | 490 | putative molybdenum transport ATP-binding protein | 100.0 | |
| COG4674 | 249 | Uncharacterized ABC-type transport system, ATPase | 100.0 | |
| cd00267 | 157 | ABC_ATPase ABC (ATP-binding cassette) transporter | 100.0 | |
| cd03222 | 177 | ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi | 100.0 | |
| KOG0057 | 591 | consensus Mitochondrial Fe/S cluster exporter, ABC | 100.0 | |
| PRK11819 | 556 | putative ABC transporter ATP-binding protein; Revi | 100.0 | |
| TIGR03719 | 552 | ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa | 100.0 | |
| COG4136 | 213 | ABC-type uncharacterized transport system, ATPase | 100.0 | |
| PRK10636 | 638 | putative ABC transporter ATP-binding protein; Prov | 100.0 | |
| COG0396 | 251 | sufC Cysteine desulfurase activator ATPase [Posttr | 100.0 | |
| PLN03073 | 718 | ABC transporter F family; Provisional | 100.0 | |
| PRK11147 | 635 | ABC transporter ATPase component; Reviewed | 100.0 | |
| cd03238 | 176 | ABC_UvrA The excision repair protein UvrA; Nucleot | 100.0 | |
| PRK13409 | 590 | putative ATPase RIL; Provisional | 100.0 | |
| PLN03140 | 1470 | ABC transporter G family member; Provisional | 100.0 | |
| COG1134 | 249 | TagH ABC-type polysaccharide/polyol phosphate tran | 99.97 | |
| COG4107 | 258 | PhnK ABC-type phosphonate transport system, ATPase | 99.97 | |
| COG4586 | 325 | ABC-type uncharacterized transport system, ATPase | 99.97 | |
| KOG0061 | 613 | consensus Transporter, ABC superfamily (Breast can | 99.97 | |
| COG5265 | 497 | ATM1 ABC-type transport system involved in Fe-S cl | 99.97 | |
| KOG0927 | 614 | consensus Predicted transporter (ABC superfamily) | 99.96 | |
| PF00005 | 137 | ABC_tran: ABC transporter This structure is on hol | 99.96 | |
| KOG0064 | 728 | consensus Peroxisomal long-chain acyl-CoA transpor | 99.96 | |
| COG0488 | 530 | Uup ATPase components of ABC transporters with dup | 99.96 | |
| COG4133 | 209 | CcmA ABC-type transport system involved in cytochr | 99.96 | |
| COG4778 | 235 | PhnL ABC-type phosphonate transport system, ATPase | 99.96 | |
| cd03270 | 226 | ABC_UvrA_I The excision repair protein UvrA domain | 99.95 | |
| cd03271 | 261 | ABC_UvrA_II The excision repair protein UvrA domai | 99.95 | |
| COG4618 | 580 | ArpD ABC-type protease/lipase transport system, AT | 99.95 | |
| cd03278 | 197 | ABC_SMC_barmotin Barmotin is a tight junction-asso | 99.95 | |
| KOG0059 | 885 | consensus Lipid exporter ABCA1 and related protein | 99.95 | |
| COG4615 | 546 | PvdE ABC-type siderophore export system, fused ATP | 99.94 | |
| COG4138 | 248 | BtuD ABC-type cobalamin transport system, ATPase c | 99.93 | |
| cd03279 | 213 | ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complex | 99.93 | |
| cd03272 | 243 | ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC protein | 99.93 | |
| COG1129 | 500 | MglA ABC-type sugar transport system, ATPase compo | 99.92 | |
| KOG0065 | 1391 | consensus Pleiotropic drug resistance proteins (PD | 99.92 | |
| cd03240 | 204 | ABC_Rad50 The catalytic domains of Rad50 are simil | 99.92 | |
| PF00664 | 275 | ABC_membrane: ABC transporter transmembrane region | 99.91 | |
| cd03274 | 212 | ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC protein | 99.91 | |
| cd03273 | 251 | ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC protein | 99.91 | |
| KOG0065 | 1391 | consensus Pleiotropic drug resistance proteins (PD | 99.91 | |
| KOG0927 | 614 | consensus Predicted transporter (ABC superfamily) | 99.91 | |
| PRK00635 | 1809 | excinuclease ABC subunit A; Provisional | 99.9 | |
| COG3845 | 501 | ABC-type uncharacterized transport systems, ATPase | 99.9 | |
| PRK00349 | 943 | uvrA excinuclease ABC subunit A; Reviewed | 99.9 | |
| PF00664 | 275 | ABC_membrane: ABC transporter transmembrane region | 99.89 | |
| TIGR00630 | 924 | uvra excinuclease ABC, A subunit. This family is b | 99.88 | |
| cd03275 | 247 | ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC protein | 99.88 | |
| COG4170 | 330 | SapD ABC-type antimicrobial peptide transport syst | 99.87 | |
| KOG0062 | 582 | consensus ATPase component of ABC transporters wit | 99.87 | |
| KOG0066 | 807 | consensus eIF2-interacting protein ABC50 (ABC supe | 99.87 | |
| cd03276 | 198 | ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC protein | 99.85 | |
| COG1245 | 591 | Predicted ATPase, RNase L inhibitor (RLI) homolog | 99.85 | |
| KOG0062 | 582 | consensus ATPase component of ABC transporters wit | 99.85 | |
| KOG2355 | 291 | consensus Predicted ABC-type transport, ATPase com | 99.82 | |
| cd03239 | 178 | ABC_SMC_head The structural maintenance of chromos | 99.82 | |
| cd03277 | 213 | ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC protein | 99.78 | |
| COG1245 | 591 | Predicted ATPase, RNase L inhibitor (RLI) homolog | 99.78 | |
| cd03280 | 200 | ABC_MutS2 MutS2 homologs in bacteria and eukaryote | 99.78 | |
| cd03241 | 276 | ABC_RecN RecN ATPase involved in DNA repair; ABC ( | 99.77 | |
| COG4178 | 604 | ABC-type uncharacterized transport system, permeas | 99.77 | |
| COG2401 | 593 | ABC-type ATPase fused to a predicted acetyltransfe | 99.75 | |
| PRK00635 | 1809 | excinuclease ABC subunit A; Provisional | 99.74 | |
| COG0178 | 935 | UvrA Excinuclease ATPase subunit [DNA replication, | 99.73 | |
| cd01128 | 249 | rho_factor Transcription termination factor rho is | 99.73 | |
| cd03227 | 162 | ABC_Class2 ABC-type Class 2 contains systems invol | 99.72 | |
| cd03242 | 270 | ABC_RecF RecF is a recombinational DNA repair ATPa | 99.67 | |
| cd03285 | 222 | ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS | 99.67 | |
| PRK00349 | 943 | uvrA excinuclease ABC subunit A; Reviewed | 99.63 | |
| TIGR00630 | 924 | uvra excinuclease ABC, A subunit. This family is b | 99.63 | |
| cd03243 | 202 | ABC_MutS_homologs The MutS protein initiates DNA m | 99.62 | |
| cd03283 | 199 | ABC_MutS-like MutS-like homolog in eukaryotes. The | 99.61 | |
| KOG0066 | 807 | consensus eIF2-interacting protein ABC50 (ABC supe | 99.6 | |
| cd00820 | 107 | PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPC | 99.58 | |
| TIGR02858 | 270 | spore_III_AA stage III sporulation protein AA. Mem | 99.58 | |
| KOG0063 | 592 | consensus RNAse L inhibitor, ABC superfamily [RNA | 99.53 | |
| cd03282 | 204 | ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS | 99.51 | |
| cd03284 | 216 | ABC_MutS1 MutS1 homolog in eukaryotes. The MutS pr | 99.5 | |
| KOG0060 | 659 | consensus Long-chain acyl-CoA transporter, ABC sup | 99.5 | |
| PRK00064 | 361 | recF recombination protein F; Reviewed | 99.46 | |
| TIGR00606 | 1311 | rad50 rad50. This family is based on the phylogeno | 99.45 | |
| COG3638 | 258 | ABC-type phosphate/phosphonate transport system, A | 99.42 | |
| PF02463 | 220 | SMC_N: RecF/RecN/SMC N terminal domain; InterPro: | 99.37 | |
| COG1116 | 248 | TauB ABC-type nitrate/sulfonate/bicarbonate transp | 99.35 | |
| cd03289 | 275 | ABCC_CFTR2 The CFTR subfamily domain 2. The cystic | 99.34 | |
| PRK07721 | 438 | fliI flagellum-specific ATP synthase; Validated | 99.32 | |
| PRK14257 | 329 | phosphate ABC transporter ATP-binding protein; Pro | 99.3 | |
| cd03281 | 213 | ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS | 99.29 | |
| PHA02562 | 562 | 46 endonuclease subunit; Provisional | 99.29 | |
| COG1124 | 252 | DppF ABC-type dipeptide/oligopeptide/nickel transp | 99.27 | |
| smart00534 | 185 | MUTSac ATPase domain of DNA mismatch repair MUTS f | 99.27 | |
| cd03216 | 163 | ABC_Carb_Monos_I This family represents the domain | 99.26 | |
| cd03369 | 207 | ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-ty | 99.26 | |
| KOG0063 | 592 | consensus RNAse L inhibitor, ABC superfamily [RNA | 99.26 | |
| COG1135 | 339 | AbcC ABC-type metal ion transport system, ATPase c | 99.26 | |
| COG1121 | 254 | ZnuC ABC-type Mn/Zn transport systems, ATPase comp | 99.26 | |
| cd03223 | 166 | ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass | 99.25 | |
| PRK13646 | 286 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.25 | |
| COG4181 | 228 | Predicted ABC-type transport system involved in ly | 99.24 | |
| COG1136 | 226 | SalX ABC-type antimicrobial peptide transport syst | 99.24 | |
| cd03248 | 226 | ABCC_TAP TAP, the Transporter Associated with Anti | 99.24 | |
| cd03233 | 202 | ABC_PDR_domain1 The pleiotropic drug resistance (P | 99.24 | |
| PRK13631 | 320 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.23 | |
| PRK13650 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.23 | |
| TIGR00960 | 216 | 3a0501s02 Type II (General) Secretory Pathway (IIS | 99.23 | |
| cd03266 | 218 | ABC_NatA_sodium_exporter NatA is the ATPase compon | 99.23 | |
| cd03244 | 221 | ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. | 99.22 | |
| PRK13637 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.22 | |
| cd03221 | 144 | ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is | 99.22 | |
| cd03257 | 228 | ABC_NikE_OppD_transporters The ABC transporter sub | 99.22 | |
| PRK11629 | 233 | lolD lipoprotein transporter ATP-binding subunit; | 99.21 | |
| PRK13643 | 288 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.21 | |
| TIGR01069 | 771 | mutS2 MutS2 family protein. Function of MutS2 is u | 99.21 | |
| PRK13645 | 289 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.21 | |
| cd03250 | 204 | ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. | 99.2 | |
| TIGR02314 | 343 | ABC_MetN D-methionine ABC transporter, ATP-binding | 99.2 | |
| PRK13642 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.2 | |
| COG1122 | 235 | CbiO ABC-type cobalt transport system, ATPase comp | 99.2 | |
| COG1127 | 263 | Ttg2A ABC-type transport system involved in resist | 99.2 | |
| cd03255 | 218 | ABC_MJ0796_Lo1CDE_FtsE This family is comprised of | 99.2 | |
| cd03288 | 257 | ABCC_SUR2 The SUR domain 2. The sulfonylurea recep | 99.19 | |
| TIGR02211 | 221 | LolD_lipo_ex lipoprotein releasing system, ATP-bin | 99.19 | |
| cd03246 | 173 | ABCC_Protease_Secretion This family represents the | 99.19 | |
| PRK13651 | 305 | cobalt transporter ATP-binding subunit; Provisiona | 99.19 | |
| TIGR00634 | 563 | recN DNA repair protein RecN. All proteins in this | 99.18 |
| >KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-168 Score=1515.75 Aligned_cols=1029 Identities=51% Similarity=0.835 Sum_probs=936.6
Q ss_pred hhhHHHHHHhhchhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcccCCchhhhhHHHHHHHHHHHHHHHHHHHHH
Q 001438 40 SVSLFKLFAFADFYDYILMSLGSIGACVHGVSVPVFFIFFGKLINIIGLAYLFPKTASHKVAKYSLDFVYLSVAILFSSW 119 (1077)
Q Consensus 40 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (1077)
..++.+++++..++++.++.+|.+++++.|+.+|++.+++|++++.+..... . ...+.+..+++.+++++++.++..+
T Consensus 12 ~~~~~~lf~~a~~~D~~Lm~~G~i~a~~~G~~~P~~~ii~g~~~~~~~~~~~-~-~~~~~~~~~~l~~~~lg~~~~~~~~ 89 (1228)
T KOG0055|consen 12 TVSFFKLFRFADRFDYLLMILGSIGAIAHGLGLPLMSIIFGKLTDVLGDNTN-K-IASSEVSKVALYFVYLGVGVFISGF 89 (1228)
T ss_pred ccchHHheeccchhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHhccc-h-hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6678999999999999999999999999999999999999999998764321 1 2224567788999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhccCCChhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001438 120 IEVSCWMYTGERQAAKMRMAYLRSMLNQDISLFDTEASTGEVISAITSDIIVVQDALSEKVGNFMHYISRFLGGFIIGFA 199 (1077)
Q Consensus 120 ~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~f~~~~~~G~i~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (1077)
++..||.+.++|...++|..++++++||++.|||.+ .+|++.+++++|++.++++++++++.+++.+.+++.+++++|+
T Consensus 90 ~q~~c~~~~geRq~~riR~~yl~~iLrQdi~~fD~~-~~g~~~~~l~~d~~~I~d~~geKvg~~i~~~~~fi~g~ii~F~ 168 (1228)
T KOG0055|consen 90 IQVSCWMRTGERQTARIRSKYLKAILRQDIGWFDTN-STGELVTRLSDDIELIQDAIGEKVGNFIQLLATFIAGFVIGFY 168 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCccceeecc-cccceEEEecCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999995 7799999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHH
Q 001438 200 RVWQISLVTLSIVPLIALAGGMYAYVTIGLIARVRKSYVKAGEIAEEVIGNVRTVQAFAGEDKAVKVYKEALSNTYKYGR 279 (1077)
Q Consensus 200 ~~~~l~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~ 279 (1077)
+.|+|+++++.+.|++++.+..+.+.+.+...+.++.++++..+++|+++++|||.+|+.|+.+.++|.+..+...+...
T Consensus 169 ~~W~Ltlv~l~~~Pli~~~g~~~a~~~~~~t~ke~~~ya~Ag~iaEe~i~~iRTV~af~gq~~e~~ry~~~L~~~~k~gi 248 (1228)
T KOG0055|consen 169 YGWKLTLVMLSFIPLIAIAGGLLARFLSKLTEKEQEAYAKAGSIAEEVISSIRTVYAFNGEKKEIERYSKALENALKFGI 248 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHh
Q 001438 280 KAGLAKGLGLGSMHCVLFLSWSLLVWYVSVVVHKHISNGGESFTTMLNVVIAGLSLGQAAPDITAFIRAKAAAYPIFEMI 359 (1077)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l 359 (1077)
+.+.+.++..++..++.+.++++.+|||+.++..+..++|++++++.+++.+...+++..|.+..+..+++|+.+|++.+
T Consensus 249 ~~g~~~G~~~G~~~~~~~~~~a~~~WyG~~li~~~~~~~g~v~~v~~~vl~g~~sLgqa~p~l~~f~~a~~aa~~I~~~i 328 (1228)
T KOG0055|consen 249 KKGLFKGLGLGFTFFLLFASYALAFWYGSTLILNGGYNGGDVITVFFSVLIGGMSLGQASPHLSAFAKARAAAYRIFETI 328 (1228)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeehhhhhhhhhccccchHHHhccccchHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCcccccccccCCCCCCCcccEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCcc
Q 001438 360 ERDTMSKASSKTGRKLDKLSGHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSG 439 (1077)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G 439 (1077)
++.|.+++....+......+|.|+|+||+|+||++|+.++|+|+||+|++||++||||||||||||++++|.|+|+|++|
T Consensus 329 ~~~~~i~~~~~~~~~~~~~~g~ief~nV~FsYPsRpdv~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~RfydP~~G 408 (1228)
T KOG0055|consen 329 DRKPSIDPYSKGGRVLSSIKGEIEFRNVCFSYPSRPDVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYDPTSG 408 (1228)
T ss_pred cCCCCCCcccccCCcccccccceEEEEEEecCCCCCcchhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCc
Confidence 99887765443333445567999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEECCeeCCCCCHHHHhhheeEEccCCCcccccHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCC
Q 001438 440 EILLDGNNIKGLDLKWLRQQIGLVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGI 519 (1077)
Q Consensus 440 ~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~ 519 (1077)
+|++||.|+++++.+|+|++||.|.|+|.||++||+|||.||+|+++.+++.+||+++++++|+..+|+|++|.+||+|.
T Consensus 409 ~V~idG~di~~~~~~~lr~~iglV~QePvlF~~tI~eNI~~G~~dat~~~i~~a~k~ana~~fi~~lp~g~~T~vge~g~ 488 (1228)
T KOG0055|consen 409 EVLIDGEDIRNLNLKWLRSQIGLVSQEPVLFATTIRENIRYGKPDATREEIEEAAKAANAHDFILKLPDGYDTLVGERGV 488 (1228)
T ss_pred eEEEcCccchhcchHHHHhhcCeeeechhhhcccHHHHHhcCCCcccHHHHHHHHHHccHHHHHHhhHHhhcccccCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEccCchhHhhcCEEEEEECCEEEEe
Q 001438 520 QLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRNADVIAVVQGRKIVKT 599 (1077)
Q Consensus 520 ~LSgGqkqri~lARal~~~p~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~vtH~~~~~~~~d~i~~l~~G~i~~~ 599 (1077)
+|||||||||||||||++||+||||||||||||+++|+.++++|++..+|+|+|+|||||+++++||+|+||++|+|+|.
T Consensus 489 qLSGGQKQRIAIARalv~~P~ILLLDEaTSaLD~~se~~Vq~ALd~~~~grTTivVaHRLStIrnaD~I~v~~~G~IvE~ 568 (1228)
T KOG0055|consen 489 QLSGGQKQRIAIARALVRNPKILLLDEATSALDAESERVVQEALDKASKGRTTIVVAHRLSTIRNADKIAVMEEGKIVEQ 568 (1228)
T ss_pred CCChHHHHHHHHHHHHHhCCCEEEecCcccccCHHHHHHHHHHHHHhhcCCeEEEEeeehhhhhccCEEEEEECCEEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cChhHHhcCCCchHHHHHHHHHHhhhcCCCCCC--CCCCCCccccccccccCCCCcccccccccchhhcccCCCCCCC--
Q 001438 600 GSHEELISNPNSAYAALVQLQEAASQQSNSSQC--PNMGRPLSIKFSRELSGTRTSFGASFRSEKESVLSHGAADATE-- 675 (1077)
Q Consensus 600 g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 675 (1077)
|+|+||++.+ |.|.++++.|+.....+..+.. ...........+. +.....+.. ....... ...+.++.++
T Consensus 569 G~h~ELi~~~-G~Y~~lv~~Q~~~~~~~~~~~~~~~~~~~~~s~~~s~--~~~~~~~~~-~~~~~~~-~~~~~e~~~~~~ 643 (1228)
T KOG0055|consen 569 GTHDELIALG-GIYSSLVRLQELEKAAEDEEEEESLKEERSRSLKSSS--SSPSLSRGS-NRSNLLS-VKPEGEDPEEPV 643 (1228)
T ss_pred cCHHHHHhcc-chHHHHHHHHhhhhhhhccccccchhhhhhhcccccc--ccccccCCc-ccccccc-cccccccccccc
Confidence 9999999985 9999999998765533211000 0000000000000 000000000 0000000 0000000000
Q ss_pred ccccccchHHHHHhhcccchHHHHHHHHHHHHHhhHHhHHHHHHHHHHHhhcc-CchhhHHHHHHHHHHHHHHHHHHHHH
Q 001438 676 PATAKHVSAIKLYSMVRPDWTYGVCGTICAIIAGAQMPLFALGVSQALVAYYM-DWDTTQREVKKITILFCCAAVITVIV 754 (1077)
Q Consensus 676 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~ 754 (1077)
..+....+.++++++.+|+|+|+++|.+++++.|+.+|++++.+++++..+.. +++........|.++|++++++.+++
T Consensus 644 ~~~~~~~s~~~i~k~~~pe~~~l~lG~i~a~i~G~~~P~fa~~~s~~~~~f~~~~~~~~~~~~~~~al~f~~l~~~~~i~ 723 (1228)
T KOG0055|consen 644 SEEDEKVSFWRIFKLNKPEWPYLLLGSLGAAIRGATYPLFAYVFSQVLEAFYPPDDDELKREVRAWALIFLGLGIVSGIT 723 (1228)
T ss_pred ccccccccHHHHHHhccchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 01124567899999999999999999999999999999999999999998875 44434444445999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccccCCchhHHHHHhhcHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 001438 755 HAIEHLSFGIMGERLTLRVREKMFSAILSNEIGWFDEMDNSSSILASRLESDATLLRTIVVDRSTILIQNFGLVTASFVI 834 (1077)
Q Consensus 755 ~~~~~~~~~~~~~~~~~~Lr~~l~~~llr~p~~FFD~~~~~~G~IlnR~s~D~~~i~~~l~~~l~~~~~~~~~~~~~i~i 834 (1077)
.+++.|+|+.+|++++.|+|.++|++++|+|++|||+++|. |+|.+|+++|...++..+++.+..+++++..++.++++
T Consensus 724 ~~~q~~~f~~~ge~Lt~R~R~~~F~~ll~qd~~wFD~~~ns-g~l~~RLa~Da~~vr~~v~~rl~~vv~~~~~~~~~iii 802 (1228)
T KOG0055|consen 724 NFLQHYFFGIAGEKLTKRLRSMMFRALLRQEVGWFDDPENS-GALSSRLATDASNVRAAVGDRLSLVVQNIAAVIIGIII 802 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCCccc-hHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999 99999999999999999999999999999999999999
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhHHHHHHHcchHHHHHhcchHHHHHHHHHHhhhhhH
Q 001438 835 AFILNWRITLVVVATYPLIISGHISEKLFFQGYGGNLSKAYLKANMLAAEAVSNIRTVAAFCSEDKVLELYSRELVEPSK 914 (1077)
Q Consensus 835 ~~~~~w~l~l~~l~~~Pl~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Etl~Gi~tIrAf~~e~~~~~~f~~~~~~~~~ 914 (1077)
+|+++|+++++++++.|++++..+.+.+++.....+.++++.+++.++.|++++||||++|++|++|.+.|.+.++...+
T Consensus 803 af~~~W~lalv~la~~Pll~~~~~~~~~~~~~~~~~~~~~~~ea~~iA~eai~NIrTV~al~~e~~~~~~y~~~l~~p~~ 882 (1228)
T KOG0055|consen 803 AFIYGWRLALVVLATFPLLILSGYLQKKFLKGFSKDDKKAYEEASKIAIEAVSNIRTVAALCAEEKFMELYKEELEKPRK 882 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Q 001438 915 RSFIRGQIAGIFYGISQFFIFSSYGLALWYGSVLMGKELASFKSVMKSFMVLIVTALAMGETLALVPDLLKGNQMAASVF 994 (1077)
Q Consensus 915 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~ 994 (1077)
...+++.+.|+.+++++.+.+..+++.+|||++++..+.+++.+++.+++++.+++..+++..++.|++.++..|+.++|
T Consensus 883 ~~~~~~~i~gl~f~~sqs~~~~~~A~~f~~G~~Li~~g~~~~~~~~~vf~~l~~ta~~~~~~~s~~Pd~~ka~~Aa~~iF 962 (1228)
T KOG0055|consen 883 SSFKRGLISGLGFGFSQSLLFFVYALSFWYGARLISNGEMTFEDVFRVFMALSFTAMALGQASSYAPDISKAKIAAGSIF 962 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCCCccCCC--CcccccccccEEEeeeeeeCCCCCcccccccceeeeeCCCEEEEECCCCCCHHHHHHHHhhccCC
Q 001438 995 EVLDRKTQVIGDI--GEELTNVEGTIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDP 1072 (1077)
Q Consensus 995 ~~l~~~~~~~~~~--~~~~~~~~G~I~f~nVsf~Y~~~~~~~VLk~vsl~I~~GekVaIVGrTGsGKSTLi~lL~Rfyd~ 1072 (1077)
+++|++|.++++. +...++.+|+|+|+||+|+||+||+.+||+|+||+|++||+|||||||||||||+++||+|||||
T Consensus 963 ~i~dr~~~i~~~~~~~~~~~~~~G~I~~~~V~F~YPsRP~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYdp 1042 (1228)
T KOG0055|consen 963 EILDRKPTIDPDSTSGGKLPNVKGDIEFRNVSFAYPTRPDVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFYDP 1042 (1228)
T ss_pred HHhcCCCCCCCCCCCCCccccceeEEEEeeeEeeCCCCCCchhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHHhcCC
Confidence 9999999887643 33356789999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCC
Q 001438 1073 TAGKA 1077 (1077)
Q Consensus 1073 ~~G~i 1077 (1077)
.+|+|
T Consensus 1043 ~~G~V 1047 (1228)
T KOG0055|consen 1043 DAGKV 1047 (1228)
T ss_pred CCCeE
Confidence 99986
|
|
| >KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-134 Score=1246.40 Aligned_cols=979 Identities=20% Similarity=0.278 Sum_probs=741.6
Q ss_pred hhhhHHHHHHhhchhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcccCCchhhhhHHHHHHHHHHHHHHHHHHHH
Q 001438 39 RSVSLFKLFAFADFYDYILMSLGSIGACVHGVSVPVFFIFFGKLINIIGLAYLFPKTASHKVAKYSLDFVYLSVAILFSS 118 (1077)
Q Consensus 39 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (1077)
+.+++.+.+..+.++......+..++......+.|. ++..+++.+.... . ....++.+++..++..++.
T Consensus 187 ~~psl~~al~~~f~~~~~~~~~~~~~~~~~~~~~P~---lL~~li~~~~~~~-~-------~~~~g~~~a~~lf~~~~l~ 255 (1381)
T KOG0054|consen 187 KKPSLLRALLRTFGRTFLLSGIFLFLRDLAGFVGPL---LLKKLILFFSEKR-L-------PLNNGYLLAVLLFLASLLQ 255 (1381)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHH---HHHHHHHHhcCCC-c-------ccchhHHHHHHHHHHHHHH
Confidence 456677776666666554444444444444677775 5677887654220 0 0111223333333334444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhcc---CCChhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001438 119 WIEVSCWMYTGERQAAKMRMAYLRSMLNQDISLFDT---EASTGEVISAITSDIIVVQDALSEKVGNFMHYISRFLGGFI 195 (1077)
Q Consensus 119 ~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~f~~---~~~~G~i~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~ 195 (1077)
.+....+.+...+.+.++|..+...++++.+..... ..++|+++|.+++|+++++++. .+++.+|..+..++
T Consensus 256 ~l~~~~~~~~~~~~g~r~R~al~~~IY~K~L~ls~~~~~~~t~G~ivNlms~D~~ri~~~~-----~~~h~~w~~Plqi~ 330 (1381)
T KOG0054|consen 256 SLLLHQYFFVSFRVGMRLRSALISAIYRKALRLSNSARGETTVGEIVNLMSVDAQRLSDAA-----CFLHLLWSAPLQII 330 (1381)
T ss_pred HHHHhHHHHHHHhhhhhHHHHHHHHHHHhhhcCchhhccCCCcchhhhhhhhhHHHHHHHH-----HHHHHHHHHHHHHH
Confidence 444456778899999999999999999888876543 1378999999999999999986 69999999999999
Q ss_pred HHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHH
Q 001438 196 IGFARVWQI----SLVTLSIVPLIALAGGMYAYVTIGLIARVRKSYVKAGEIAEEVIGNVRTVQAFAGEDKAVKVYKEAL 271 (1077)
Q Consensus 196 ~~~~~~~~l----~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~Ik~~~~e~~~~~~~~~~~ 271 (1077)
++.++.|.+ +++.++++.+++.+..+.+++..+..++..+..+++.+.++|.++|||+||+|+||+.|.+++++.|
T Consensus 331 ~~l~lLy~~LG~sa~~G~~~~il~~p~n~~~a~~~~~~q~~~m~~~D~Rik~~nEiL~~IkviK~yaWE~~F~~~I~~~R 410 (1381)
T KOG0054|consen 331 LALYLLYGLLGPSALAGVAVMVLLIPLNSFLAKKIAKFQKRLMKRKDERIKLMNEILNGIKVIKLYAWEKPFLKKIEDLR 410 (1381)
T ss_pred HHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhHhhhhHhhHHHHHHHHHHHH
Confidence 999988875 4445555556666677788888888889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhcccCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 001438 272 SNTYKYGRKAGLAKGLGLGSMHCVLFLSWSLLVWYVSVV-VHKHISNGGESFTTMLNVVIAGLSLGQAAPDITAFIRAKA 350 (1077)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-v~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 350 (1077)
++|.+..+|.++++++...+..+.+.++.++. ++.+. ...+.+++..+|+++..+..+..|+..++..+..+.++.+
T Consensus 411 ~~El~~lrk~~~~~~~~~~~~~~~p~lv~~~t--F~~~v~~~~~~lt~~~aF~slalfniLr~pl~~~P~~i~~~vqa~V 488 (1381)
T KOG0054|consen 411 QKELKLLRKSAYLSALNSFLNFFSPVLVSVVT--FVVFVLLLGNLLTASTAFTSLALFNILRFPLFMLPSVISQLVQAKV 488 (1381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHhhccCccccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998887777776654443 44444 4567889999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCcccccccccCCCCCCCcccEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHH
Q 001438 351 AAYPIFEMIERDTMSKASSKTGRKLDKLSGHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLI 430 (1077)
Q Consensus 351 s~~ri~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l 430 (1077)
|.+|+.+++..++....... .....+.+..++++|.+|+|++....+.|+||||+|++|+++|||||+|||||||+++|
T Consensus 489 S~~Ri~~fl~~~e~~~~~~~-~~~~~~~~~~i~i~~~sfsW~~~~~~~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~Ai 567 (1381)
T KOG0054|consen 489 SLKRLKEFLLSEELDPDSVE-RSPDEAGENAIEIKNGSFSWDSESPEPTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAI 567 (1381)
T ss_pred HHHHHHHHhcCcccCccccc-cCCCCCCCceEEEeeeeEecCCCCCcccccceeEEecCCCEEEEECCCCCCHHHHHHHH
Confidence 99999999987654322111 01222334579999999999864445599999999999999999999999999999999
Q ss_pred hcccCCCccEEEECCeeCCCCCHHHHhhheeEEccCCCcccccHHHHHhcCCCC--CCHHHHHHHHHHHhHHHHHhcCcc
Q 001438 431 ERFYEPLSGEILLDGNNIKGLDLKWLRQQIGLVNQEPALFATTIRENILYGKDD--ATMEEITRAAKLSEAMSFISNLPE 508 (1077)
Q Consensus 431 ~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~~ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~l~~ 508 (1077)
+|++++.+|++.++| .++||||+||+|+|||||||+||.|. .+|+++.+||.+. .+++.||+
T Consensus 568 LGEm~~~sG~v~v~g-------------siaYv~Q~pWI~ngTvreNILFG~~~d~~rY~~Vi~aC~L~---~Dle~Lp~ 631 (1381)
T KOG0054|consen 568 LGEMPKLSGSVAVNG-------------SVAYVPQQPWIQNGTVRENILFGSPYDEERYDKVIKACALK---KDLEILPF 631 (1381)
T ss_pred hcCcccccceEEEcC-------------eEEEeccccHhhCCcHHHhhhcCccccHHHHHHHHHHccCH---hHHhhcCC
Confidence 999999999999999 49999999999999999999999853 3556666666654 45778999
Q ss_pred chhhhhcCCCCCCChHHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHH-HHHHHHHhCCCeEEEEccCchhHhhcCE
Q 001438 509 RFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSV-QEALDRVMVGRTTVVVAHRLSTIRNADV 587 (1077)
Q Consensus 509 g~~t~~~~~g~~LSgGqkqri~lARal~~~p~illlDEpts~lD~~~~~~i-~~~l~~~~~~~t~i~vtH~~~~~~~~d~ 587 (1077)
|+.|+|||+|.+|||||||||+||||+|+|+||+|||||+||+|+|+.+++ .++|+...++||+|+|||+++++++||+
T Consensus 632 GD~TeIGErGinLSGGQKqRIsLARAVY~~adIYLLDDplSAVDahvg~~if~~ci~~~L~~KT~ILVTHql~~L~~ad~ 711 (1381)
T KOG0054|consen 632 GDLTEIGERGINLSGGQKQRISLARAVYQDADIYLLDDPLSAVDAHVGKHIFEECIRGLLRGKTVILVTHQLQFLPHADQ 711 (1381)
T ss_pred CCcceecCCccCCcHhHHHHHHHHHHHhccCCEEEEcCcchhhhHhhhHHHHHHHHHhhhcCCEEEEEeCchhhhhhCCE
Confidence 999999999999999999999999999999999999999999999987776 7788888899999999999999999999
Q ss_pred EEEEECCEEEEecChhHHhcCCCchHHHHHHHHHHhhhcCCCCCCCCCCCCccccccccccCCCCcccccccccc-hhhc
Q 001438 588 IAVVQGRKIVKTGSHEELISNPNSAYAALVQLQEAASQQSNSSQCPNMGRPLSIKFSRELSGTRTSFGASFRSEK-ESVL 666 (1077)
Q Consensus 588 i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 666 (1077)
|++|+||+|.+.|+|+|+++. ...|.++......+............ +. ....... +.....+...++ ...+
T Consensus 712 Iivl~~G~I~~~Gty~el~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~--~~---~~~~~~~-~~~~~~~~~~~~~~~~~ 784 (1381)
T KOG0054|consen 712 IIVLKDGKIVESGTYEELLKS-GGDFAELAHEEESEQEEEASEKDLES--GE---SSRESES-RSLESLSSEEEKSKDEK 784 (1381)
T ss_pred EEEecCCeEecccCHHHHHhc-chhHHHHhhccchhhccccccccccc--cc---cccchhh-hhhhhhccccccccccc
Confidence 999999999999999999976 77777774332222211100000000 00 0000000 000000000000 0000
Q ss_pred ccCCCCCCCccccccchHHHHHhhcccchHHHHHHHHHHHHHhhHHhHHHHHHHHHHHhhcc-CchhhH-------HHHH
Q 001438 667 SHGAADATEPATAKHVSAIKLYSMVRPDWTYGVCGTICAIIAGAQMPLFALGVSQALVAYYM-DWDTTQ-------REVK 738 (1077)
Q Consensus 667 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-------~~~~ 738 (1077)
........+++...+...+++| +.|+..+..+.++....+......+..+..++|. .|.+.. ....
T Consensus 785 ~~~~~~~~~ee~~~G~v~~~vY------~~Y~~a~~g~~~~~~~~~~~v~~~~~~~~~~~WLs~W~~~~~~~~~~~~~~~ 858 (1381)
T KOG0054|consen 785 EEEDKLVQEEERETGKVSWSVY------KKYIKAAGGFLLVLLILLLFVLTQVLQIASNYWLSYWTDDGEDNGTTTVSTS 858 (1381)
T ss_pred chhhHHHHHHHHhcCEeeHHHH------HHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccCCCcc
Confidence 0000000111123344444444 5565553333322222233333444555556665 332211 2345
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccccCCchhHHHHHhhcHHHHHHHHHhhH
Q 001438 739 KITILFCCAAVITVIVHAIEHLSFGIMGERLTLRVREKMFSAILSNEIGWFDEMDNSSSILASRLESDATLLRTIVVDRS 818 (1077)
Q Consensus 739 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~Lr~~l~~~llr~p~~FFD~~~~~~G~IlnR~s~D~~~i~~~l~~~l 818 (1077)
.+.++|.+++++..++..++.+.+...+.+++++||++|+++++|+||+||| +||+|||+||||+|++.+|..+|..+
T Consensus 859 ~~~~vY~~l~~~~~~~~~~rs~~~~~~~l~aS~~Lh~~ml~~Ilrapm~FFd--tTP~GRILNRFSkD~~~vD~~Lp~~~ 936 (1381)
T KOG0054|consen 859 FYLGVYALLGVASSLLTLLRSFLFAKGGLKASRKLHDKLLNSILRAPMSFFD--TTPTGRILNRFSKDIDTVDVLLPFTL 936 (1381)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhcC--CCCccchhhhcccchHHHHHhhHHHH
Confidence 6788999999999999999999999999999999999999999999999999 49999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHh--------HHHHHHHcchH
Q 001438 819 TILIQNFGLVTASFVIAFILNWRITLVVVATYPLIISGHISEKLFFQGYGGNLSKAYLKAN--------MLAAEAVSNIR 890 (1077)
Q Consensus 819 ~~~~~~~~~~~~~i~i~~~~~w~l~l~~l~~~Pl~i~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~Etl~Gi~ 890 (1077)
..+++++++++++++++.+..| +++++++|+.+++++++.+|. ..+|+..|+. .+++|+++|+.
T Consensus 937 ~~~~~~~~~~l~~~~vi~~~~P---~fli~~~pl~v~~~~~~~~Y~-----~tsReLkRLesitRSPi~sh~~Etl~Gls 1008 (1381)
T KOG0054|consen 937 EFFLQSLLNVLGILVVISYVTP---WFLIAIIPLGVIYYFVQRYYL-----ATSRELKRLESITRSPIYSHFSETLQGLS 1008 (1381)
T ss_pred HHHHHHHHHHHHHHHHhhHHhH---HHHHHHHHHHHHHHHHHHHHH-----HHhHHHHHhhhcccchHHHhHHHHhcCcc
Confidence 9999999999999999999987 667788888887765555444 4455555554 46789999999
Q ss_pred HHHHhcchHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHH
Q 001438 891 TVAAFCSEDKVLELYSRELVEPSKRSFIRGQIAGIFYGISQFFIFSSYGLALWYGSVLMGKELASFKSVMKSFMVLIVTA 970 (1077)
Q Consensus 891 tIrAf~~e~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~ 970 (1077)
|||||+.|++|.++|.+++|.+++..+ ....+..|+++..-++...+.+...+-+.+...+..++|..-..+.+.+...
T Consensus 1009 TIRAf~~~~rf~~~~~~~~D~~~~~~f-~~~~a~RWla~Rle~ig~~~v~~~al~~vl~~~~~~~~g~vGLslsyal~lt 1087 (1381)
T KOG0054|consen 1009 TIRAFGKEERFIQENDELIDENSRAFF-LSISANRWLAVRLELLGNLVVLIAALFAVLLPSGLISPGLVGLSLSYALQLT 1087 (1381)
T ss_pred eeeeccccHHHHHHHHHHhhhhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCcchHHHHHHHHHHHH
Confidence 999999999999999999999987755 4566777777776666555544444434443333344554444444555555
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHcCCCCccC----CCCcccccccccEEEeeeeeeCCCCCcccccccceeeeeCC
Q 001438 971 LAMGETLALVPDLLKGNQMAASVFEVLDRKTQVIG----DIGEELTNVEGTIELRGVHFSYPSRPEVVIFKDFNLKVRAG 1046 (1077)
Q Consensus 971 ~~~~~~~~~~~~~~~~~~a~~ri~~~l~~~~~~~~----~~~~~~~~~~G~I~f~nVsf~Y~~~~~~~VLk~vsl~I~~G 1046 (1077)
..+........++++.+.++||+.++.+.++|.+. ..+++.||.+|+|+|+|+++||+++. ++|||||||+|+||
T Consensus 1088 ~~l~~~vR~~~elEn~m~SVERv~eY~~~~~E~p~~~~~~~pp~~WP~~G~I~f~~~~~RYrp~l-p~VLk~is~~I~p~ 1166 (1381)
T KOG0054|consen 1088 GLLQWLVRQSSELENNMVSVERVLEYTDIPSEAPLEIEESRPPPSWPSKGEIEFEDLSLRYRPNL-PLVLKGISFTIKPG 1166 (1381)
T ss_pred HHHHHHHHHHHHHHhcchhhhHHHHHhcCCCCCCCCCcCCCCCCCCCCCCeEEEEEeEEEeCCCC-cchhcCceEEEcCC
Confidence 55566667778889999999999999997766221 12556689999999999999997664 45899999999999
Q ss_pred CEEEEECCCCCCHHHHHHHHhhccCCCCCCC
Q 001438 1047 KSMALVGQSGSGKSTVLSLILRFYDPTAGKA 1077 (1077)
Q Consensus 1047 ekVaIVGrTGsGKSTLi~lL~Rfyd~~~G~i 1077 (1077)
||||||||||||||||+++|||+.||.+|+|
T Consensus 1167 eKVGIVGRTGaGKSSL~~aLFRl~e~~~G~I 1197 (1381)
T KOG0054|consen 1167 EKVGIVGRTGAGKSSLILALFRLVEPAEGEI 1197 (1381)
T ss_pred ceEEEeCCCCCCHHHHHHHHHHhcCccCCeE
Confidence 9999999999999999999999999999986
|
|
| >PTZ00265 multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-129 Score=1266.66 Aligned_cols=1023 Identities=27% Similarity=0.443 Sum_probs=846.9
Q ss_pred hhhhHHHHHHhhchhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcccCCchhhhhHHHHHHHHHHHHHHHHHHHH
Q 001438 39 RSVSLFKLFAFADFYDYILMSLGSIGACVHGVSVPVFFIFFGKLINIIGLAYLFPKTASHKVAKYSLDFVYLSVAILFSS 118 (1077)
Q Consensus 39 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (1077)
.+.+++++++|..++++.+++++++++++.+++.|+++++++.++|.+... .....+++.+++++++.+++.
T Consensus 43 ~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~p~~~~i~g~iid~~~~~--------~~~~~~~~~~~~~~i~~~~~~ 114 (1466)
T PTZ00265 43 QKIPFFLPFKCLPASHRKLLGVSFVCATISGGTLPFFVSVFGVIMKNMNLG--------ENVNDIIFSLVLIGIFQFILS 114 (1466)
T ss_pred ccccHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--------chHHHHHHHHHHHHHHHHHHH
Confidence 445799999999988888899999999999999999999999999975311 112334555667777888899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhccCCChhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001438 119 WIEVSCWMYTGERQAAKMRMAYLRSMLNQDISLFDTEASTGEVISAITSDIIVVQDALSEKVGNFMHYISRFLGGFIIGF 198 (1077)
Q Consensus 119 ~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~f~~~~~~G~i~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (1077)
+++.+++.+.++++..++|.++|++++++|++|||.. ++|++++++++|++.+++.++..+..++..++++++++++++
T Consensus 115 ~~~~~~~~~~~~~~~~~lR~~~~~~ll~~~~~~fd~~-~~~~l~s~l~~d~~~i~~~i~~~~~~~~~~~~~~i~~~i~~~ 193 (1466)
T PTZ00265 115 FISSFCMDVVTTKILKTLKLEFLKSVFYQDGQFHDNN-PGSKLTSDLDFYLEQVNAGIGTKFITIFTYASAFLGLYIWSL 193 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHcCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999984 889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHH
Q 001438 199 ARVWQISLVTLSIVPLIALAGGMYAYVTIGLIARVRKSYVKAGEIAEEVIGNVRTVQAFAGEDKAVKVYKEALSNTYKYG 278 (1077)
Q Consensus 199 ~~~~~l~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~ 278 (1077)
+++|.|++++++++|+++++..++.++.++..+..++..++..+.++|+++|+++||+|+.|+.+.++|.+..++..+..
T Consensus 194 ~~sw~Lalv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tVka~~~e~~~~~~f~~~~~~~~~~~ 273 (1466)
T PTZ00265 194 FKNARLTLCITCVFPLIYICGVICNKKVKINKKTSLLYNNNTMSIIEEALVGIRTVVSYCGEKTILKKFNLSEKLYSKYI 273 (1466)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHhccCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999998888888888899999999999999999999999999999999999999989
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--------ccCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 001438 279 RKAGLAKGLGLGSMHCVLFLSWSLLVWYVSVVVHKH--------ISNGGESFTTMLNVVIAGLSLGQAAPDITAFIRAKA 350 (1077)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~--------~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 350 (1077)
.+...+.++..++..++.++++++++|+|++++..| .+++|.+++++++.+.....+..+.+.+..++++++
T Consensus 274 ~k~~~~~~~~~~~~~~~~~~~~~l~~~~G~~lv~~g~~~~~~~~~~t~g~v~~~~~~~l~~~~~l~~i~~~~~~~~~a~~ 353 (1466)
T PTZ00265 274 LKANFMESLHIGMINGFILASYAFGFWYGTRIIISDLSNQQPNNDFHGGSVISILLGVLISMFMLTIILPNITEYMKSLE 353 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999888888888889999999999999875 478898888777766666667777788899999999
Q ss_pred HHHHHHHHhccCcccccccccCCCCCCCcccEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHH
Q 001438 351 AAYPIFEMIERDTMSKASSKTGRKLDKLSGHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLI 430 (1077)
Q Consensus 351 s~~ri~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l 430 (1077)
|++|++++++.+++.+.. ..+...+. .+.|+++||+|+|+++++.++|+|+||+|++||++|||||||||||||+++|
T Consensus 354 a~~ri~~ii~~~~~~~~~-~~~~~~~~-~~~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL 431 (1466)
T PTZ00265 354 ATNSLYEIINRKPLVENN-DDGKKLKD-IKKIQFKNVRFHYDTRKDVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLI 431 (1466)
T ss_pred HHHHHHHHHcCCCCCCCC-CCCccCCC-CCcEEEEEEEEEcCCCCCCceeccceEEEcCCCEEEEECCCCCCHHHHHHHH
Confidence 999999999887654321 11111122 2479999999999865555799999999999999999999999999999999
Q ss_pred hcccCCCccEEEE-CCeeCCCCCHHHHhhheeEEccCCCcccccHHHHHhcCCC--------------------------
Q 001438 431 ERFYEPLSGEILL-DGNNIKGLDLKWLRQQIGLVNQEPALFATTIRENILYGKD-------------------------- 483 (1077)
Q Consensus 431 ~g~~~~~~G~i~~-~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~~ni~~~~~-------------------------- 483 (1077)
+|+|+|++|+|.+ ||.++++++.+++|++||||+|+|.+|++||+|||.+|..
T Consensus 432 ~gl~~p~~G~I~i~~g~~i~~~~~~~lr~~Ig~V~Q~~~LF~~TI~eNI~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 511 (1466)
T PTZ00265 432 ERLYDPTEGDIIINDSHNLKDINLKWWRSKIGVVSQDPLLFSNSIKNNIKYSLYSLKDLEALSNYYNEDGNDSQENKNKR 511 (1466)
T ss_pred HHhccCCCCeEEEeCCcchhhCCHHHHHHhccEecccccchhccHHHHHHhcCCCccccchhcccccccccccccccccc
Confidence 9999999999999 5799999999999999999999999999999999999741
Q ss_pred -------------------------------CCCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHH
Q 001438 484 -------------------------------DATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAIS 532 (1077)
Q Consensus 484 -------------------------------~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lA 532 (1077)
..+++++.++|+.+++++++..+|+|++|.+|++|.+|||||||||+||
T Consensus 512 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~a~~~~~l~~~i~~lp~g~dT~vg~~g~~LSGGQkQRiaIA 591 (1466)
T PTZ00265 512 NSCRAKCAGDLNDMSNTTDSNELIEMRKNYQTIKDSEVVDVSKKVLIHDFVSALPDKYETLVGSNASKLSGGQKQRISIA 591 (1466)
T ss_pred ccccccccchhhhcccccchhhhhhcccccccCCHHHHHHHHHHhCcHHHHHhCccccCceeCCCCCcCCHHHHHHHHHH
Confidence 2356789999999999999999999999999999999999999999999
Q ss_pred HHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh--CCCeEEEEccCchhHhhcCEEEEEECC----------------
Q 001438 533 RAIVKNPSILLLDEATSALDAESENSVQEALDRVM--VGRTTVVVAHRLSTIRNADVIAVVQGR---------------- 594 (1077)
Q Consensus 533 Ral~~~p~illlDEpts~lD~~~~~~i~~~l~~~~--~~~t~i~vtH~~~~~~~~d~i~~l~~G---------------- 594 (1077)
||++++|+|||||||||+||+++++.+++.|+++. +|+|+|+||||+++++.||+|++|++|
T Consensus 592 RAll~~P~ILlLDEpTSaLD~~se~~i~~~L~~~~~~~g~TvIiIsHrls~i~~aD~Iivl~~g~~g~~~~~~~~~~~~~ 671 (1466)
T PTZ00265 592 RAIIRNPKILILDEATSSLDNKSEYLVQKTINNLKGNENRITIIIAHRLSTIRYANTIFVLSNRERGSTVDVDIIGEDPT 671 (1466)
T ss_pred HHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHhhcCCCEEEEEeCCHHHHHhCCEEEEEeCCcccccccccccccccc
Confidence 99999999999999999999999999999999885 489999999999999999999999986
Q ss_pred -------------------------------EEEEecChhHHhcCCCchHHHHHHHHHHhhhcCC-C--CCCCC---CCC
Q 001438 595 -------------------------------KIVKTGSHEELISNPNSAYAALVQLQEAASQQSN-S--SQCPN---MGR 637 (1077)
Q Consensus 595 -------------------------------~i~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~---~~~ 637 (1077)
+|+|+|+|+||+++.++.|+.+++.|........ . ..... ...
T Consensus 672 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ive~Gth~~L~~~~~g~y~~l~~~q~~~~~~~~~~~~~~~~~~~~~~~ 751 (1466)
T PTZ00265 672 KDNKENNNKNNKDDNNNNNNNNNNKINNAGSYIIEQGTHDALMKNKNGIYYTMINNQKVSSKKSSNNDNDKDSDMKSSAY 751 (1466)
T ss_pred ccccccccccccccccccccccccccccCCceeEeeCCHHHHHhccCCcHHHHHhhhccccccccccccccccccccccc
Confidence 5999999999998558999999987754321110 0 00000 000
Q ss_pred Cccc-cc-cccccC---CCCcccccccccch-hhcccCCCCC-C----Cc----cccccchHHHHHhhcccchHHHHHHH
Q 001438 638 PLSI-KF-SRELSG---TRTSFGASFRSEKE-SVLSHGAADA-T----EP----ATAKHVSAIKLYSMVRPDWTYGVCGT 702 (1077)
Q Consensus 638 ~~~~-~~-~~~~~~---~~~~~~~~~~~~~~-~~~~~~~~~~-~----~~----~~~~~~~~~~~~~~~~~~~~~~~~~~ 702 (1077)
+... .. .++... .+............ .....+.... . ++ .........+++++.+++++.+.+++
T Consensus 752 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 831 (1466)
T PTZ00265 752 KDSERGYDPDEMNGNSKHENESASNKKSCKMSDENASENNAGGKLPFLRNLFKRKPKAPNNLRIVYREIFSYKKDVTIIA 831 (1466)
T ss_pred cccccccccccccccccccccccccccccccccccccchhccccchhhhhccccccccchhHHHHHHHHHHHHHHHHHHH
Confidence 0000 00 000000 00000000000000 0000000000 0 00 01111134556667777777788888
Q ss_pred HHHHHHhhHHhHHHHHHHHHHHhhccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001438 703 ICAIIAGAQMPLFALGVSQALVAYYMDWDTTQREVKKITILFCCAAVITVIVHAIEHLSFGIMGERLTLRVREKMFSAIL 782 (1077)
Q Consensus 703 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~Lr~~l~~~ll 782 (1077)
+++++.++..|+++++++.+++.++.. .........|.+++++++++.+++.+++.+++.++++++..++|.++|++++
T Consensus 832 ~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~l~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~lR~~lf~~ll 910 (1466)
T PTZ00265 832 LSILVAGGLYPVFALLYAKYVSTLFDF-ANLEANSNKYSLYILVIAIAMFISETLKNYYNNVIGEKVEKTMKRRLFENIL 910 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999999876532 1112234567788888888999999999999999999999999999999999
Q ss_pred cCCccccccccCCchhHHHHHhhcHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 001438 783 SNEIGWFDEMDNSSSILASRLESDATLLRTIVVDRSTILIQNFGLVTASFVIAFILNWRITLVVVATYPLIISGHISEKL 862 (1077)
Q Consensus 783 r~p~~FFD~~~~~~G~IlnR~s~D~~~i~~~l~~~l~~~~~~~~~~~~~i~i~~~~~w~l~l~~l~~~Pl~i~~~~~~~~ 862 (1077)
++|++|||++++++|++++|+++|++.++..+...+..++..++.++++++++++++|++++++++++|++........+
T Consensus 911 ~~~~~~fd~~~~~~G~l~srl~~Dv~~l~~~~~~~l~~~~~~i~~~i~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~ 990 (1466)
T PTZ00265 911 YQEISFFDQDKHAPGLLSAHINRDVHLLKTGLVNNIVIFTHFIVLFLVSMVMSFYFCPIVAAVLTGTYFIFMRVFAIRAR 990 (1466)
T ss_pred cCCHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999767999999999999999999999999999999999999999999999999998877666555433332222
Q ss_pred HHHh--hh-------------hhHHHHHHHHhHHHHHHHcchHHHHHhcchHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Q 001438 863 FFQG--YG-------------GNLSKAYLKANMLAAEAVSNIRTVAAFCSEDKVLELYSRELVEPSKRSFIRGQIAGIFY 927 (1077)
Q Consensus 863 ~~~~--~~-------------~~~~~~~~~~~~~~~Etl~Gi~tIrAf~~e~~~~~~f~~~~~~~~~~~~~~~~~~~~~~ 927 (1077)
.... .. ...++...+.+..++|+++|++|||+|+.|+++.++|.+..+...+...+.....++++
T Consensus 991 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tVka~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1070 (1466)
T PTZ00265 991 LTANKDVEKKEINQPGTVFAYNSDDEIFKDPSFLIQEAFYNMNTVIIYGLEDYFCNLIEKAIDYSNKGQKRKTLVNSMLW 1070 (1466)
T ss_pred HHHHHHHHhhhccccccccchhhhHHHHHHHHHHHHHHHhcHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1110 00 01233466778889999999999999999999999999999999988888899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHcCCCCccCC-
Q 001438 928 GISQFFIFSSYGLALWYGSVLMGKELASFKSVMKSFMVLIVTALAMGETLALVPDLLKGNQMAASVFEVLDRKTQVIGD- 1006 (1077)
Q Consensus 928 ~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~- 1006 (1077)
++.+.+.++..++++|+|+.++..|.++++++++++++..+...+++.+..+.++++++..+++|++++++.+++++..
T Consensus 1071 ~~~~~~~~~~~~~~~~~G~~lv~~g~it~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~a~~a~~ri~~ll~~~~~~~~~~ 1150 (1466)
T PTZ00265 1071 GFSQSAQLFINSFAYWFGSFLIRRGTILVDDFMKSLFTFLFTGSYAGKLMSLKGDSENAKLSFEKYYPLIIRKSNIDVRD 1150 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCcCCCCC
Confidence 9999999999999999999999999999999999887777777778889999999999999999999999987654321
Q ss_pred -CCcc---cccccccEEEeeeeeeCCCCCcccccccceeeeeCCCEEEEECCCCCCHHHHHHHHhhccCCC
Q 001438 1007 -IGEE---LTNVEGTIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPT 1073 (1077)
Q Consensus 1007 -~~~~---~~~~~G~I~f~nVsf~Y~~~~~~~VLk~vsl~I~~GekVaIVGrTGsGKSTLi~lL~Rfyd~~ 1073 (1077)
.+.. .++.+|.|+|+||+|+||++|+.+||+|+||+|+|||+||||||||||||||++||+|||||+
T Consensus 1151 ~~~~~~~~~~~~~g~I~f~nVsF~Y~~~~~~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp~ 1221 (1466)
T PTZ00265 1151 NGGIRIKNKNDIKGKIEIMDVNFRYISRPNVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLK 1221 (1466)
T ss_pred CcccccccCCCCCceEEEEEEEEECCCCCCCccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCCCc
Confidence 1111 123568999999999999877778999999999999999999999999999999999999993
|
|
| >PLN03130 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-116 Score=1150.57 Aligned_cols=904 Identities=18% Similarity=0.230 Sum_probs=642.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCchhhccCCChhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH
Q 001438 127 YTGERQAAKMRMAYLRSMLNQDISLFDTEASTGEVISAITSDIIVVQDALSEKVGNFMHYISRFLGGFIIGFARVW-QIS 205 (1077)
Q Consensus 127 ~~~~~~~~~lr~~~~~~ll~~~~~~f~~~~~~G~i~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~ 205 (1077)
+.+.++...++..+|+++++++..++++ .++|+++|++++|++++++.+. .+ +.++..+..+++.+++.| .++
T Consensus 367 ~~~~~ir~~L~~~i~~k~L~l~~~~~~~-~~~G~ivnl~s~Dv~~i~~~~~-~l----~~l~~~pl~ii~~~~lL~~~lg 440 (1622)
T PLN03130 367 RVGFRLRSTLVAAVFRKSLRLTHEGRKK-FTSGKITNLMTTDAEALQQICQ-QL----HTLWSAPFRIIIAMVLLYQQLG 440 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHhcCChhhcCC-CCHHHHHHHHHHHHHHHHHHHH-HH----HHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666678899999999999887 4899999999999999999863 33 333333333333322222 233
Q ss_pred HHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHH
Q 001438 206 LVTLS---IVPLIALAGGMYAYVTIGLIARVRKSYVKAGEIAEEVIGNVRTVQAFAGEDKAVKVYKEALSNTYKYGRKAG 282 (1077)
Q Consensus 206 l~~l~---~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~ 282 (1077)
+..++ ++.+++.+..++.++.++..++..+..+++.+.++|.++|+++||+|+||+.+.+++++.++++.+..++..
T Consensus 441 ~~~l~g~~v~~l~~~l~~~~~~~~~~~~~~~~~~~d~r~~~~~E~L~gi~~IK~~~~E~~~~~~i~~~r~~e~~~~~~~~ 520 (1622)
T PLN03130 441 VASLIGSLMLVLMFPIQTFIISKMQKLTKEGLQRTDKRIGLMNEVLAAMDTVKCYAWENSFQSKVQTVRDDELSWFRKAQ 520 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33222 222333444556677777778888888899999999999999999999999999999999999999888877
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhccC
Q 001438 283 LAKGLGLGSMHCVLFLSWSLLVWYVSVVVHKHISNGGESFTTMLNVVIAGLSLGQAAPDITAFIRAKAAAYPIFEMIERD 362 (1077)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~~ 362 (1077)
...++...+...... .+.++++|++.+..+.+++|.+|+++.++..+..|+..++..+..+.+++++++|+.++++.+
T Consensus 521 ~~~~~~~~~~~~~~~--~v~~~~fg~~~~~~g~Lt~g~vf~~l~l~~~l~~pl~~l~~~i~~~~~a~~s~~RI~~~L~~~ 598 (1622)
T PLN03130 521 LLSAFNSFILNSIPV--LVTVVSFGVFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNLITQAVNANVSLKRLEELLLAE 598 (1622)
T ss_pred HHHHHHHHHHHHHHH--HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCc
Confidence 776665544333222 245567788888899999999999888888888899998889999999999999999999765
Q ss_pred cccccccccCCCCCCCcccEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCc-cEE
Q 001438 363 TMSKASSKTGRKLDKLSGHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLS-GEI 441 (1077)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~-G~i 441 (1077)
+..+.... ...+..+.|+++|++|+|++++++++|+|+||+|++||+++||||||||||||+++|+|+++|.+ |+|
T Consensus 599 e~~~~~~~---~~~~~~~~I~~~nvsf~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~GG~I 675 (1622)
T PLN03130 599 ERVLLPNP---PLEPGLPAISIKNGYFSWDSKAERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDASV 675 (1622)
T ss_pred ccccccCC---cccCCCCceEEEeeEEEccCCCCCceeeceeEEecCCCEEEEECCCCCCHHHHHHHHHHhhccCCCceE
Confidence 43211110 11112347999999999986444679999999999999999999999999999999999999999 999
Q ss_pred EECCeeCCCCCHHHHhhheeEEccCCCcccccHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCC
Q 001438 442 LLDGNNIKGLDLKWLRQQIGLVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQL 521 (1077)
Q Consensus 442 ~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~L 521 (1077)
.+.| +|+||+|+||+|++||||||.||.+ .++++..++++.+++.++++.||+|++|.+||+|.+|
T Consensus 676 ~l~~-------------~Iayv~Q~p~LfngTIreNI~fg~~-~d~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~G~~L 741 (1622)
T PLN03130 676 VIRG-------------TVAYVPQVSWIFNATVRDNILFGSP-FDPERYERAIDVTALQHDLDLLPGGDLTEIGERGVNI 741 (1622)
T ss_pred EEcC-------------eEEEEcCccccCCCCHHHHHhCCCc-ccHHHHHHHHHHhCcHHHHHhCCCcccccccCCCCCC
Confidence 8655 6999999999999999999999986 4788889999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHH-HHHHHHHhCCCeEEEEccCchhHhhcCEEEEEECCEEEEec
Q 001438 522 SGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSV-QEALDRVMVGRTTVVVAHRLSTIRNADVIAVVQGRKIVKTG 600 (1077)
Q Consensus 522 SgGqkqri~lARal~~~p~illlDEpts~lD~~~~~~i-~~~l~~~~~~~t~i~vtH~~~~~~~~d~i~~l~~G~i~~~g 600 (1077)
||||||||+||||+|++||||||||||||||+++++++ .++++...+++|+|+|||+++.++.||+|++|++|+|+++|
T Consensus 742 SGGQKQRIaLARAly~~~~IlLLDEptSALD~~~~~~I~~~~l~~~l~~kTvIlVTH~l~~l~~aD~Ii~L~~G~i~e~G 821 (1622)
T PLN03130 742 SGGQKQRVSMARAVYSNSDVYIFDDPLSALDAHVGRQVFDKCIKDELRGKTRVLVTNQLHFLSQVDRIILVHEGMIKEEG 821 (1622)
T ss_pred CHHHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHhhHHhcCCEEEEEECCHhHHHhCCEEEEEeCCEEEEeC
Confidence 99999999999999999999999999999999999877 56777777899999999999999999999999999999999
Q ss_pred ChhHHhcCCCchHHHHHHHHHHhhhcCCCCCCCCCCCCccccccccccCCCCcccccccccchhhcccCCCCCCCccccc
Q 001438 601 SHEELISNPNSAYAALVQLQEAASQQSNSSQCPNMGRPLSIKFSRELSGTRTSFGASFRSEKESVLSHGAADATEPATAK 680 (1077)
Q Consensus 601 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 680 (1077)
+|+|++++ ++.|.+++..+....+............... ............ .. .......+.......+++.+..
T Consensus 822 t~~eL~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~~e~~~~ 896 (1622)
T PLN03130 822 TYEELSNN-GPLFQKLMENAGKMEEYVEENGEEEDDQTSS-KPVANGNANNLK--KD-SSSKKKSKEGKSVLIKQEERET 896 (1622)
T ss_pred CHHHHHhc-chhHHHHHHhccccccccccccccccccccc-cccccccccccc--cc-ccccccccccchhhhhHHHHhc
Confidence 99999976 7788888765422111110000000000000 000000000000 00 0000000000000001111222
Q ss_pred cchHHHHHhhcccchHHHHHHHHHHHHHhhHHhHHHHHHHHHHHhhccC-chh----hHHHHHHHHHHHHHHHHHHHHHH
Q 001438 681 HVSAIKLYSMVRPDWTYGVCGTICAIIAGAQMPLFALGVSQALVAYYMD-WDT----TQREVKKITILFCCAAVITVIVH 755 (1077)
Q Consensus 681 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~----~~~~~~~~~~~~~~l~~~~~~~~ 755 (1077)
+...+.+|. .|+........+.......+..........+|.. |.+ ..+....|.++|++++++..++.
T Consensus 897 g~v~~~vy~------~Y~~~~g~~~~~~~~~~~~~~~~~~~~~~~~wl~~w~~~~~~~~~~~~~~~~i~~~l~~~~~i~~ 970 (1622)
T PLN03130 897 GVVSWKVLE------RYKNALGGAWVVMILFLCYVLTEVFRVSSSTWLSEWTDQGTPKTHGPLFYNLIYALLSFGQVLVT 970 (1622)
T ss_pred CccCHHHHH------HHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCchhHHHHHHHHHHHHHHHHH
Confidence 222233332 2222110000000000001111111222333332 211 01123456677888888899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccccCCchhHHHHHhhcHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 001438 756 AIEHLSFGIMGERLTLRVREKMFSAILSNEIGWFDEMDNSSSILASRLESDATLLRTIVVDRSTILIQNFGLVTASFVIA 835 (1077)
Q Consensus 756 ~~~~~~~~~~~~~~~~~Lr~~l~~~llr~p~~FFD~~~~~~G~IlnR~s~D~~~i~~~l~~~l~~~~~~~~~~~~~i~i~ 835 (1077)
+++.+++...+.+++.++|+++|++++++|++|||+ +|+|+|+|||++|++.+|..++..+..++..++.++++++++
T Consensus 971 ~~~~~~~~~~~~~~~~~L~~~l~~~ll~~p~~ffd~--~~~G~IlnR~s~Di~~id~~l~~~~~~~~~~~~~~i~~~i~i 1048 (1622)
T PLN03130 971 LLNSYWLIMSSLYAAKRLHDAMLGSILRAPMSFFHT--NPLGRIINRFAKDLGDIDRNVAVFVNMFLGQIFQLLSTFVLI 1048 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhcc--CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999995 999999999999999999999999999999999999999988
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHH----HHHHHHhHHHHHHHcchHHHHHhcchHHHHHHHHHHhhh
Q 001438 836 FILNWRITLVVVATYPLIISGHISEKLFFQGYGGNLS----KAYLKANMLAAEAVSNIRTVAAFCSEDKVLELYSRELVE 911 (1077)
Q Consensus 836 ~~~~w~l~l~~l~~~Pl~i~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~Etl~Gi~tIrAf~~e~~~~~~f~~~~~~ 911 (1077)
++.+|. .+++++|+.+++..+..++ ++..++.+ ...+...+++.|+++|++|||||+.|++|.+++.+..+.
T Consensus 1049 ~~~~~~---~~~~~~pl~~~~~~~~~~~-~~~~r~~~r~~~~~~s~~~~~~~Etl~Gi~tIraf~~~~~f~~~~~~~~~~ 1124 (1622)
T PLN03130 1049 GIVSTI---SLWAIMPLLVLFYGAYLYY-QSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMAEINGRSMDN 1124 (1622)
T ss_pred HHHHHH---HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhcchHHHHHHHHhCCHHHHHhCcHHHHHHHHHHHHHHH
Confidence 888873 3344455544443333322 22222222 223445577899999999999999999999999888888
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhcCC-CC-----HHHHHHHHHHHHHHHHHHHHHHhhhhhHH
Q 001438 912 PSKRSFIRGQIAGIFYGISQFFIFSSYGLALWYGSV-LMGKEL-AS-----FKSVMKSFMVLIVTALAMGETLALVPDLL 984 (1077)
Q Consensus 912 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-l~~~~~-~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 984 (1077)
+.+..+..... ..|.+....+. .++.+++++. .+..+. .. .+.+-..+.+.......+..+......++
T Consensus 1125 ~~~~~~~~~~~-~~wl~~~l~~~---~~~~i~~~~~~~v~~~~~~~~~~~~~~~~G~~ls~~~~~~~~l~~l~~~~~~~e 1200 (1622)
T PLN03130 1125 NIRFTLVNMSS-NRWLAIRLETL---GGLMIWLTASFAVMQNGRAENQAAFASTMGLLLSYALNITSLLTAVLRLASLAE 1200 (1622)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHH---HHHHHHHHHHHHHHcccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77665543322 33333222111 1222233322 232221 11 11111122233334445555566677889
Q ss_pred HHHHHHHHHHHHHcCCCCccC----CCCcccccccccEEEeeeeeeCCCCCcccccccceeeeeCCCEEEEECCCCCCHH
Q 001438 985 KGNQMAASVFEVLDRKTQVIG----DIGEELTNVEGTIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKS 1060 (1077)
Q Consensus 985 ~~~~a~~ri~~~l~~~~~~~~----~~~~~~~~~~G~I~f~nVsf~Y~~~~~~~VLk~vsl~I~~GekVaIVGrTGsGKS 1060 (1077)
+++.+.+|+.++++.+++.+. ..+.+.||.+|.|+|+||+|+|+++. ++||||+||+|+||||||||||||||||
T Consensus 1201 ~~~~sveRi~e~~~~~~E~~~~~~~~~~~~~wp~~g~I~f~nVsf~Y~~~~-~~VL~~is~~I~~GekVaIVGrSGSGKS 1279 (1622)
T PLN03130 1201 NSLNAVERVGTYIDLPSEAPLVIENNRPPPGWPSSGSIKFEDVVLRYRPEL-PPVLHGLSFEISPSEKVGIVGRTGAGKS 1279 (1622)
T ss_pred HHHHHHHHHHHHhCCCCcccccccCCCCCCCCCCCCcEEEEEEEEEeCCCC-CceecceeEEEcCCCEEEEECCCCCCHH
Confidence 999999999999987766432 11223357789999999999997542 3689999999999999999999999999
Q ss_pred HHHHHHhhccCCCCCCC
Q 001438 1061 TVLSLILRFYDPTAGKA 1077 (1077)
Q Consensus 1061 TLi~lL~Rfyd~~~G~i 1077 (1077)
||+++|+|||||++|+|
T Consensus 1280 TLl~lL~rl~~p~~G~I 1296 (1622)
T PLN03130 1280 SMLNALFRIVELERGRI 1296 (1622)
T ss_pred HHHHHHhCcCCCCCceE
Confidence 99999999999999986
|
|
| >PLN03232 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-115 Score=1146.70 Aligned_cols=903 Identities=18% Similarity=0.221 Sum_probs=649.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCchhhccCCChhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H
Q 001438 126 MYTGERQAAKMRMAYLRSMLNQDISLFDTEASTGEVISAITSDIIVVQDALSEKVGNFMHYISRFLGGFIIGFARVWQ-I 204 (1077)
Q Consensus 126 ~~~~~~~~~~lr~~~~~~ll~~~~~~f~~~~~~G~i~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l 204 (1077)
.+.+.++...++..+|+++++.+...+++ .++|+++|++++|++++++.. . .++.++..+..+++.+++.|. +
T Consensus 366 ~~~~~~ir~~l~~~i~~k~l~l~~~~~~~-~~~G~i~n~ls~Dv~~i~~~~-~----~l~~l~~~p~~ii~~~~~l~~~l 439 (1495)
T PLN03232 366 GRVGFRLRSTLVAAIFHKSLRLTHEARKN-FASGKVTNMITTDANALQQIA-E----QLHGLWSAPFRIIVSMVLLYQQL 439 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCChhhcCC-CCHHHHHHHHHHHHHHHHHHH-H----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666778999999999998887 489999999999999999975 2 344444444444444433333 4
Q ss_pred HHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHH
Q 001438 205 SLVTLSIVPL---IALAGGMYAYVTIGLIARVRKSYVKAGEIAEEVIGNVRTVQAFAGEDKAVKVYKEALSNTYKYGRKA 281 (1077)
Q Consensus 205 ~l~~l~~~pl---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~ 281 (1077)
++..++.+++ ++.+..++.++..+..++.++..+++.+.++|.++||++||+|+||+.+.+++++.++++.+..++.
T Consensus 440 g~~~l~~~~v~~l~~pl~~~~~~~~~~~~~~~~~~~d~r~~~~~E~l~gi~~IK~~~~e~~~~~~~~~~r~~e~~~~~~~ 519 (1495)
T PLN03232 440 GVASLFGSLILFLLIPLQTLIVRKMRKLTKEGLQWTDKRVGIINEILASMDTVKCYAWEKSFESRIQGIRNEELSWFRKA 519 (1495)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4433333322 2223455677788888888888999999999999999999999999999999999999999988888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcc
Q 001438 282 GLAKGLGLGSMHCVLFLSWSLLVWYVSVVVHKHISNGGESFTTMLNVVIAGLSLGQAAPDITAFIRAKAAAYPIFEMIER 361 (1077)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~ 361 (1077)
....++...+..... ..+.++++|++.+.++.+|+|.+|+++.++..+..|+..++..+..+.+++++.+|+.++++.
T Consensus 520 ~~~~~~~~~~~~~~~--~~~~~~~fg~~~v~~~~lt~g~vf~~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~~L~~ 597 (1495)
T PLN03232 520 QLLSAFNSFILNSIP--VVVTLVSFGVFVLLGGDLTPARAFTSLSLFAVLRSPLNMLPNLLSQVVNANVSLQRIEELLLS 597 (1495)
T ss_pred HHHHHHHHHHHHHHH--HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 777666544332222 223456788888888999999999998888888889998888999999999999999999986
Q ss_pred CcccccccccCCCCCCCcccEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEE
Q 001438 362 DTMSKASSKTGRKLDKLSGHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEI 441 (1077)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i 441 (1077)
+++.+... ....+..+.|+++|++|+|++++++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|.+
T Consensus 598 ~~~~~~~~---~~~~~~~~~I~~~~vsF~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~G~i 674 (1495)
T PLN03232 598 EERILAQN---PPLQPGAPAISIKNGYFSWDSKTSKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETSS 674 (1495)
T ss_pred cccccccc---CCcCCCCCcEEEEeeEEEcCCCCCCceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCcccCCCE
Confidence 54322111 111112347999999999986444679999999999999999999999999999999999999999876
Q ss_pred EECCeeCCCCCHHHHhhheeEEccCCCcccccHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCC
Q 001438 442 LLDGNNIKGLDLKWLRQQIGLVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQL 521 (1077)
Q Consensus 442 ~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~L 521 (1077)
. ++|++|+||+|+||+|++||||||.||.+ .++++..++++.+++.++++.+|+|++|.+||+|.+|
T Consensus 675 ~------------~~~~~Iayv~Q~p~Lf~gTIreNI~fg~~-~~~e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G~~L 741 (1495)
T PLN03232 675 V------------VIRGSVAYVPQVSWIFNATVRENILFGSD-FESERYWRAIDVTALQHDLDLLPGRDLTEIGERGVNI 741 (1495)
T ss_pred E------------EecCcEEEEcCccccccccHHHHhhcCCc-cCHHHHHHHHHHhCCHHHHHhCCCCCCceecCCCccc
Confidence 3 24568999999999999999999999985 6788899999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHH-HHHHHHhCCCeEEEEccCchhHhhcCEEEEEECCEEEEec
Q 001438 522 SGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQ-EALDRVMVGRTTVVVAHRLSTIRNADVIAVVQGRKIVKTG 600 (1077)
Q Consensus 522 SgGqkqri~lARal~~~p~illlDEpts~lD~~~~~~i~-~~l~~~~~~~t~i~vtH~~~~~~~~d~i~~l~~G~i~~~g 600 (1077)
||||||||+||||+|++|||+||||||||||+++++++. ++++...+++|+|+||||++.++.||+|++|++|+|+++|
T Consensus 742 SGGQkQRIaLARAly~~~~IlLLDEptSaLD~~t~~~I~~~~l~~~l~~kT~IlvTH~~~~l~~aD~Ii~L~~G~i~~~G 821 (1495)
T PLN03232 742 SGGQKQRVSMARAVYSNSDIYIFDDPLSALDAHVAHQVFDSCMKDELKGKTRVLVTNQLHFLPLMDRIILVSEGMIKEEG 821 (1495)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhhcCCEEEEEECChhhHHhCCEEEEEeCCEEEEec
Confidence 999999999999999999999999999999999999885 5566667899999999999999999999999999999999
Q ss_pred ChhHHhcCCCchHHHHHHHHHHhhhcCCCCCCCCCCCCccccccccccCCCCcccccccccchhhcccCCCCCCCccccc
Q 001438 601 SHEELISNPNSAYAALVQLQEAASQQSNSSQCPNMGRPLSIKFSRELSGTRTSFGASFRSEKESVLSHGAADATEPATAK 680 (1077)
Q Consensus 601 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 680 (1077)
+|+|++++ ++.|.++++.+....+..+..+ ... .. .+........ ........... .+.......++++...
T Consensus 822 t~~eL~~~-~~~~~~l~~~~~~~~~~~~~~~--~~~-~~-~~~~~~~~~~--~~~~~~~~~~~-~~~~~~~~~~~e~~~~ 893 (1495)
T PLN03232 822 TFAELSKS-GSLFKKLMENAGKMDATQEVNT--NDE-NI-LKLGPTVTID--VSERNLGSTKQ-GKRGRSVLVKQEERET 893 (1495)
T ss_pred CHHHHHhc-chhHHHHHHhcccccccccccc--ccc-cc-cccccccccc--ccccccccccc-cccchhhhhhHHHHhc
Confidence 99999976 7888888765432111110000 000 00 0000000000 00000000000 0000000001111222
Q ss_pred cchHHHHH-hhcccchHHHHHHHHHHHHHhhHHhHHHHHHHHHHHhhcc-Cchhh----HHHHHHHHHHHHHHHHHHHHH
Q 001438 681 HVSAIKLY-SMVRPDWTYGVCGTICAIIAGAQMPLFALGVSQALVAYYM-DWDTT----QREVKKITILFCCAAVITVIV 754 (1077)
Q Consensus 681 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~----~~~~~~~~~~~~~l~~~~~~~ 754 (1077)
+...+++| .|.+....+...+.+ ........+.....++|. .|.+. ......|..+|++++++..++
T Consensus 894 g~v~~~vy~~y~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~wl~~w~~~~~~~~~~~~~~l~~y~~l~~~~~~~ 966 (1495)
T PLN03232 894 GIISWNVLMRYNKAVGGLWVVMIL-------LVCYLTTEVLRVSSSTWLSIWTDQSTPKSYSPGFYIVVYALLGFGQVAV 966 (1495)
T ss_pred CcccHHHHHHHHHHcCcHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHhcccCCCCCCcchHHHHHHHHHHHHHHH
Confidence 22233333 232221111111110 001111112223334444 23221 112346778889999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccccCCchhHHHHHhhcHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 001438 755 HAIEHLSFGIMGERLTLRVREKMFSAILSNEIGWFDEMDNSSSILASRLESDATLLRTIVVDRSTILIQNFGLVTASFVI 834 (1077)
Q Consensus 755 ~~~~~~~~~~~~~~~~~~Lr~~l~~~llr~p~~FFD~~~~~~G~IlnR~s~D~~~i~~~l~~~l~~~~~~~~~~~~~i~i 834 (1077)
.+++.+++...+.+++.++|++++++++++|++|||+ +|+|+|+|||++|++.+|..++..+..++..++.+++++++
T Consensus 967 ~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~p~~ff~~--~~~G~ilnr~s~Di~~id~~l~~~~~~~~~~~~~~i~~~i~ 1044 (1495)
T PLN03232 967 TFTNSFWLISSSLHAAKRLHDAMLNSILRAPMLFFHT--NPTGRVINRFSKDIGDIDRNVANLMNMFMNQLWQLLSTFAL 1044 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeeCc--CCchHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999994 99999999999999999999999999999999988888888
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHH---HhhhhhHHHHHHHHhHHHHHHHcchHHHHHhcchHHHHHHHHHHhhh
Q 001438 835 AFILNWRITLVVVATYPLIISGHISEKLFF---QGYGGNLSKAYLKANMLAAEAVSNIRTVAAFCSEDKVLELYSRELVE 911 (1077)
Q Consensus 835 ~~~~~w~l~l~~l~~~Pl~i~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~Etl~Gi~tIrAf~~e~~~~~~f~~~~~~ 911 (1077)
+++.+|. .+++++|+.+++.....++. +...+..+...+...++++|+++|++|||+|+.|++|.+++.+..+.
T Consensus 1045 ~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~s~~~~~~~E~l~G~~tIraf~~~~~~~~~~~~~~~~ 1121 (1495)
T PLN03232 1045 IGTVSTI---SLWAIMPLLILFYAAYLYYQSTSREVRRLDSVTRSPIYAQFGEALNGLSSIRAYKAYDRMAKINGKSMDN 1121 (1495)
T ss_pred HHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHhcChHHHhcCCcHHHHHHHHHHHHHH
Confidence 8877753 33344455544333333222 11222223334455677899999999999999999999999888887
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhh-cCCC----CHHHHHH-HHHHHHHHHHHHHHHHhhhhhHH
Q 001438 912 PSKRSFIRGQIAGIFYGISQFFIFSSYGLALWYGS-VLMG-KELA----SFKSVMK-SFMVLIVTALAMGETLALVPDLL 984 (1077)
Q Consensus 912 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~l~~-~~~~----~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 984 (1077)
+.+..+.... ...|........ + ++++++++ ..+. .+.. .+...+. ++.+......++..+.....+++
T Consensus 1122 ~~~~~~~~~~-~~~wl~~~~~~~--~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~l~~~~~~~~ 1197 (1495)
T PLN03232 1122 NIRFTLANTS-SNRWLTIRLETL--G-GVMIWLTATFAVLRNGNAENQAGFASTMGLLLSYTLNITTLLSGVLRQASKAE 1197 (1495)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHH--H-HHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7766554332 233333322211 1 22333333 2232 2221 1112221 22333344455667777788899
Q ss_pred HHHHHHHHHHHHHcCCCCccCC----CCcccccccccEEEeeeeeeCCCCCcccccccceeeeeCCCEEEEECCCCCCHH
Q 001438 985 KGNQMAASVFEVLDRKTQVIGD----IGEELTNVEGTIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKS 1060 (1077)
Q Consensus 985 ~~~~a~~ri~~~l~~~~~~~~~----~~~~~~~~~G~I~f~nVsf~Y~~~~~~~VLk~vsl~I~~GekVaIVGrTGsGKS 1060 (1077)
.++.+.+|+.++++.+++.+.. .+.+.||.+|+|+|+||+|+|+++ .++||||+||+|+||||||||||||||||
T Consensus 1198 ~~~~s~eRi~e~~~~~~e~~~~~~~~~~~~~~p~~g~I~f~nVsf~Y~~~-~~~vL~~isl~I~~GekvaIVG~SGSGKS 1276 (1495)
T PLN03232 1198 NSLNSVERVGNYIDLPSEATAIIENNRPVSGWPSRGSIKFEDVHLRYRPG-LPPVLHGLSFFVSPSEKVGVVGRTGAGKS 1276 (1495)
T ss_pred HHHHHHHHHHHHhcCCccccccccCCCCCCCCCCCCcEEEEEEEEEECCC-CCcccccceEEEcCCCEEEEECCCCCCHH
Confidence 9999999999999877664321 122235678999999999999654 24689999999999999999999999999
Q ss_pred HHHHHHhhccCCCCCCC
Q 001438 1061 TVLSLILRFYDPTAGKA 1077 (1077)
Q Consensus 1061 TLi~lL~Rfyd~~~G~i 1077 (1077)
||+++|+|+|||++|+|
T Consensus 1277 TL~~lL~rl~~p~~G~I 1293 (1495)
T PLN03232 1277 SMLNALFRIVELEKGRI 1293 (1495)
T ss_pred HHHHHHhCCCcCCCceE
Confidence 99999999999999986
|
|
| >TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-111 Score=1114.24 Aligned_cols=992 Identities=16% Similarity=0.205 Sum_probs=698.0
Q ss_pred hhhHHHHHHhhchhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcccCCchhhhhHHHHHHHHHHHHHHHHHHHHH
Q 001438 40 SVSLFKLFAFADFYDYILMSLGSIGACVHGVSVPVFFIFFGKLINIIGLAYLFPKTASHKVAKYSLDFVYLSVAILFSSW 119 (1077)
Q Consensus 40 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (1077)
.+++.+.+..+.++.+...++..++..+..+++|+ +++.+++.+.... .+ ......++..++++.++..++..
T Consensus 304 ~~sl~~~l~~~~~~~~l~~~~~~l~~~~~~~~~P~---ll~~li~~~~~~~-~~---~~~g~~~~~~~~~~~~~~~~~~~ 376 (1522)
T TIGR00957 304 KPSLFKVLYKTFGPYFLMSFCFKAIHDLMMFIGPQ---ILSLLIRFVNDPM-AP---DWQGYFYTGLLFVCACLQTLILH 376 (1522)
T ss_pred CccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHhcCCC-cc---cchHHHHHHHHHHHHHHHHHHHH
Confidence 35566665555555554444444455555666665 6678888653211 11 01111122222222223333332
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhccCCChhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001438 120 IEVSCWMYTGERQAAKMRMAYLRSMLNQDISLFDTEASTGEVISAITSDIIVVQDALSEKVGNFMHYISRFLGGFIIGFA 199 (1077)
Q Consensus 120 ~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~f~~~~~~G~i~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (1077)
...+...+.+.++...++..+|+|+++++...+++ .++|+++|++++|++++.+.. ..++.+|..+..++++++
T Consensus 377 ~~~~~~~~~~~~ir~~L~~~iy~K~L~l~~~~~~~-~~~G~i~nl~s~D~~~i~~~~-----~~~~~~~~~~~~i~~~~~ 450 (1522)
T TIGR00957 377 QYFHICFVSGMRIKTAVMGAVYRKALVITNSARKS-STVGEIVNLMSVDAQRFMDLA-----TYINMIWSAPLQVILALY 450 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhcCC-CCHHHHHHHHHHhHHHHHHHH-----HHHHHHHHHHHHHHHHHH
Confidence 22333445677778888888999999999999887 489999999999999998854 355566655555554444
Q ss_pred HHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHH
Q 001438 200 RVWQ----ISLVTLSIVPLIALAGGMYAYVTIGLIARVRKSYVKAGEIAEEVIGNVRTVQAFAGEDKAVKVYKEALSNTY 275 (1077)
Q Consensus 200 ~~~~----l~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~ 275 (1077)
+.|. .+++.++++++++.+..++.+...+..++.++..+++.+.++|.++||++||+|+||+.+.+++++.++++.
T Consensus 451 ll~~~~g~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~r~~~~~E~l~~ik~IK~~~~e~~~~~~i~~~r~~e~ 530 (1522)
T TIGR00957 451 FLWLNLGPSVLAGVAVMVLMVPLNAVMAMKTKTYQVAHMKSKDNRIKLMNEILNGIKVLKLYAWELAFLDKVEGIRQEEL 530 (1522)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 4443 233444455556666677778888888888899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hcccCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 001438 276 KYGRKAGLAKGLGLGSMHCVLFLSWSLLVWYVSVVVH--KHISNGGESFTTMLNVVIAGLSLGQAAPDITAFIRAKAAAY 353 (1077)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~--~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ 353 (1077)
+..++...+..+..........+ +.++.++.+.+. ++.++.+.+|+.+.++..+..|+..++..+..+.+++++.+
T Consensus 531 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~f~~~~~~~~~~~l~~~~~f~~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~ 608 (1522)
T TIGR00957 531 KVLKKSAYLHAVGTFTWVCTPFL--VALITFAVYVTVDENNILDAEKAFVSLALFNILRFPLNILPMVISSIVQASVSLK 608 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHhcCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88877777665544332222222 222334455554 35688999999877777777899999999999999999999
Q ss_pred HHHHHhccCcccccccccCCCCCC-CcccEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhc
Q 001438 354 PIFEMIERDTMSKASSKTGRKLDK-LSGHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIER 432 (1077)
Q Consensus 354 ri~~~l~~~~~~~~~~~~~~~~~~-~~~~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g 432 (1077)
|+.++++.++..+.. .......+ ..+.|+++|++|+|++. ++++|+|+||++++||+++|+||||||||||+++|+|
T Consensus 609 Ri~~~l~~~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~l~~isl~i~~G~~v~IvG~~GsGKSTLl~~l~g 686 (1522)
T TIGR00957 609 RLRIFLSHEELEPDS-IERRTIKPGEGNSITVHNATFTWARD-LPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLA 686 (1522)
T ss_pred HHHHHHcCccccccc-ccccccCCCCCCcEEEEEeEEEcCCC-CCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 999999865432111 00011111 12379999999999743 3469999999999999999999999999999999999
Q ss_pred ccCCCccEEEECCeeCCCCCHHHHhhheeEEccCCCcccccHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHhcCccchhh
Q 001438 433 FYEPLSGEILLDGNNIKGLDLKWLRQQIGLVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFET 512 (1077)
Q Consensus 433 ~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t 512 (1077)
+++|++|+|.++| +|+||||+||+|++||+|||.+|.+ .+.++..++++.+++.++++.+|+|++|
T Consensus 687 ~~~~~~G~i~~~g-------------~i~yv~Q~~~l~~~Ti~eNI~~g~~-~~~~~~~~~~~~~~l~~~l~~~~~g~~t 752 (1522)
T TIGR00957 687 EMDKVEGHVHMKG-------------SVAYVPQQAWIQNDSLRENILFGKA-LNEKYYQQVLEACALLPDLEILPSGDRT 752 (1522)
T ss_pred CCccCCcEEEECC-------------EEEEEcCCccccCCcHHHHhhcCCc-cCHHHHHHHHHHhCCHHHHHhcCCCCCc
Confidence 9999999999998 4999999999999999999999875 3445556666777777889999999999
Q ss_pred hhcCCCCCCChHHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHH---HhCCCeEEEEccCchhHhhcCEEE
Q 001438 513 QVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDR---VMVGRTTVVVAHRLSTIRNADVIA 589 (1077)
Q Consensus 513 ~~~~~g~~LSgGqkqri~lARal~~~p~illlDEpts~lD~~~~~~i~~~l~~---~~~~~t~i~vtH~~~~~~~~d~i~ 589 (1077)
.+|++|.+||||||||++||||++++|+|+|||||||+||+++++.+.+.+.+ ..+++|+|+|||+++.++.||+|+
T Consensus 753 ~ig~~g~~LSGGQkqRiaLARAl~~~~~illLDEp~saLD~~~~~~i~~~l~~~~~~~~~~tvIlvTH~~~~l~~~D~ii 832 (1522)
T TIGR00957 753 EIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFEHVIGPEGVLKNKTRILVTHGISYLPQVDVII 832 (1522)
T ss_pred eecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhhhhcCCEEEEEeCChhhhhhCCEEE
Confidence 99999999999999999999999999999999999999999999999988853 457899999999999999999999
Q ss_pred EEECCEEEEecChhHHhcCCCchHHHHHHHHHHhhhcCC-CCC--CC-CCCCCcc---c-----cccccccCCC----Cc
Q 001438 590 VVQGRKIVKTGSHEELISNPNSAYAALVQLQEAASQQSN-SSQ--CP-NMGRPLS---I-----KFSRELSGTR----TS 653 (1077)
Q Consensus 590 ~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~-~~~~~~~---~-----~~~~~~~~~~----~~ 653 (1077)
+|++|++++.|+++|+.++ ++.|.++...+........ ... .. ....+.. . ....+....+ ..
T Consensus 833 ~l~~G~i~~~g~~~~l~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 911 (1522)
T TIGR00957 833 VMSGGKISEMGSYQELLQR-DGAFAEFLRTYAPDEQQGHLEDSWTALVSGEGKEAKLIENGMLVTDVVGKQLQRQLSASS 911 (1522)
T ss_pred EecCCeEEeeCCHHHHHhc-chhHHHHHHhhccccccccccccccccccccccccccccccccccccccchhhhhccccc
Confidence 9999999999999999876 6778887754322111100 000 00 0000000 0 0000000000 00
Q ss_pred cccccc--c--cchhhcccCCC----C-CCCccccccchHHHHHhhcccchHHHHHH-HHHHHHHhhHHhHHHHHHHHHH
Q 001438 654 FGASFR--S--EKESVLSHGAA----D-ATEPATAKHVSAIKLYSMVRPDWTYGVCG-TICAIIAGAQMPLFALGVSQAL 723 (1077)
Q Consensus 654 ~~~~~~--~--~~~~~~~~~~~----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 723 (1077)
...... . .....+..... . .+++.+..+...+.. |+.|+..+ ....++..+.+ ....+....
T Consensus 912 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~v~~~~------y~~Y~~~~g~~~~~~~~~~~--~~~~~~~~~ 983 (1522)
T TIGR00957 912 SDSGDQSRHHGSSAELQKAEAKEETWKLMEADKAQTGQVELSV------YWDYMKAIGLFITFLSIFLF--VCNHVSALA 983 (1522)
T ss_pred cccccccccccccccccccccccchhhhHHHHHHhcCcccHHH------HHHHHHHcCHHHHHHHHHHH--HHHHHHHHH
Confidence 000000 0 00000000000 0 001111111112222 23443322 11111111111 111112222
Q ss_pred HhhccC-chh------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccccCCc
Q 001438 724 VAYYMD-WDT------TQREVKKITILFCCAAVITVIVHAIEHLSFGIMGERLTLRVREKMFSAILSNEIGWFDEMDNSS 796 (1077)
Q Consensus 724 ~~~~~~-~~~------~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~Lr~~l~~~llr~p~~FFD~~~~~~ 796 (1077)
..+|.. |.+ .......|..+|++++++..++.+++.+++.+.+.++++++|+++|++++++|++|||. +|+
T Consensus 984 ~~~~l~~w~~~~~~~~~~~~~~~~~~iy~~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ff~~--~~~ 1061 (1522)
T TIGR00957 984 SNYWLSLWTDDPMVNGTQNNTSLRLSVYGALGILQGFAVFGYSMAVSIGGIQASRVLHQDLLHNKLRSPMSFFER--TPS 1061 (1522)
T ss_pred HHHHHHHHhccccccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhHhcc--CCh
Confidence 333332 111 01112345567888888888888888999999999999999999999999999999995 999
Q ss_pred hhHHHHHhhcHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH
Q 001438 797 SILASRLESDATLLRTIVVDRSTILIQNFGLVTASFVIAFILNWRITLVVVATYPLIISGHISEKLFFQGYGGNLSKAYL 876 (1077)
Q Consensus 797 G~IlnR~s~D~~~i~~~l~~~l~~~~~~~~~~~~~i~i~~~~~w~l~l~~l~~~Pl~i~~~~~~~~~~~~~~~~~~~~~~ 876 (1077)
|+|+|||++|++.+|..++..+..++..++.+++.++++++.+|.+++++++++++..+....+.+..+...+..+...+
T Consensus 1062 G~ilnR~s~Di~~id~~l~~~~~~~~~~~~~~i~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~s 1141 (1522)
T TIGR00957 1062 GNLVNRFSKELDTVDSMIPPVIKMFMGSLFNVIGALIVILLATPIAAVIIPPLGLLYFFVQRFYVASSRQLKRLESVSRS 1141 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999988888655544433333322222222222222222333445
Q ss_pred HHhHHHHHHHcchHHHHHhcchHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hcCCCC
Q 001438 877 KANMLAAEAVSNIRTVAAFCSEDKVLELYSRELVEPSKRSFIRGQIAGIFYGISQFFIFSSYGLALWYGSVLM-GKELAS 955 (1077)
Q Consensus 877 ~~~~~~~Etl~Gi~tIrAf~~e~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~-~~~~~~ 955 (1077)
...+++.|+++|++|||||++|++|.+++.+..+.+.+..+.......+.....+.+.. .++++.++..+ ..+.++
T Consensus 1142 ~l~~~~~E~l~Gi~tIraf~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~v~~~~~~~ 1218 (1522)
T TIGR00957 1142 PVYSHFNETLLGVSVIRAFEEQERFIHQSDLKVDENQKAYYPSIVANRWLAVRLECVGN---CIVLFAALFAVISRHSLS 1218 (1522)
T ss_pred HHHHHHHHHhCCcHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhcCCCC
Confidence 56688899999999999999999999999999999888877655555554444443322 23333444443 357789
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHcCCCCccC--C--CCcccccccccEEEeeeeeeCCCCC
Q 001438 956 FKSVMKSFMVLIVTALAMGETLALVPDLLKGNQMAASVFEVLDRKTQVIG--D--IGEELTNVEGTIELRGVHFSYPSRP 1031 (1077)
Q Consensus 956 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~l~~~~~~~~--~--~~~~~~~~~G~I~f~nVsf~Y~~~~ 1031 (1077)
++.+..++.+......++..+.....++++++.+++|+.++++.+++.+. + .+.+.||.+|+|+|+||+|+|++++
T Consensus 1219 ~g~l~~~l~~~~~~~~~l~~l~~~~~~~e~~~~s~eRi~~~~~~~~e~~~~~~~~~~~~~wp~~g~I~f~nVsf~Y~~~~ 1298 (1522)
T TIGR00957 1219 AGLVGLSVSYSLQVTFYLNWLVRMSSEMETNIVAVERLKEYSETEKEAPWQIQETAPPSGWPPRGRVEFRNYCLRYREDL 1298 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccccccCCCCCCCCCCCCcEEEEEEEEEeCCCC
Confidence 99988888888888889999999999999999999999999987765431 1 1222357789999999999998653
Q ss_pred cccccccceeeeeCCCEEEEECCCCCCHHHHHHHHhhccCCCCCCC
Q 001438 1032 EVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKA 1077 (1077)
Q Consensus 1032 ~~~VLk~vsl~I~~GekVaIVGrTGsGKSTLi~lL~Rfyd~~~G~i 1077 (1077)
++|||||||+|+||||||||||||||||||+++|+|||||++|+|
T Consensus 1299 -~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~~~~G~I 1343 (1522)
T TIGR00957 1299 -DLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEI 1343 (1522)
T ss_pred -cccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCccCCCCeE
Confidence 358999999999999999999999999999999999999999986
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. |
| >PTZ00243 ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-105 Score=1051.12 Aligned_cols=998 Identities=15% Similarity=0.169 Sum_probs=678.1
Q ss_pred hhHHHHHHhhchhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcccCCchhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 001438 41 VSLFKLFAFADFYDYILMSLGSIGACVHGVSVPVFFIFFGKLINIIGLAYLFPKTASHKVAKYSLDFVYLSVAILFSSWI 120 (1077)
Q Consensus 41 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (1077)
.++.+.+....++.....++..++..+..++.|+ +++.+++.+... . ........+.+.+++..++..++...
T Consensus 232 ~~l~~~l~~~~~~~~~~~~~~~l~~~~~~l~~P~---ll~~~v~~l~~~--~--~~~~~g~~l~~~l~~~~~~~~~~~~~ 304 (1560)
T PTZ00243 232 LSLLRTLFAALPYYVWWQIPFKLLSDVCTLTLPV---LLKYFVKFLDAD--N--ATWGRGLGLVLTLFLTQLIQSVCLHR 304 (1560)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHhcCC--C--cchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455544444444433333344444455566665 567777754211 1 10010111111222222233333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhcc-CCChhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001438 121 EVSCWMYTGERQAAKMRMAYLRSMLNQDISLFDT-EASTGEVISAITSDIIVVQDALSEKVGNFMHYISRFLGGFIIGFA 199 (1077)
Q Consensus 121 ~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~f~~-~~~~G~i~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (1077)
+.+...+.+.++...++..+|+|+++.+...+.+ +.++|+++|++++|++++++++. .+..++...+.++++++++..
T Consensus 305 ~~~~~~r~~~~~r~~L~~~if~K~l~ls~~~~~~~~~~~G~i~nl~s~Dv~~i~~~~~-~~~~l~~~Pl~li~~~~lL~~ 383 (1560)
T PTZ00243 305 FYYISIRCGLQYRSALNALIFEKCFTISSKSLAQPDMNTGRIINMMSTDVERINSFMQ-YCMYLWSSPMVLLLSILLLSR 383 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhCCCCCCHHHHHHHHHHhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 3333344455555556666788888877765542 13789999999999999999873 233333344444444444443
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHH
Q 001438 200 RVWQISLVTLSIVPLIALAGGMYAYVTIGLIARVRKSYVKAGEIAEEVIGNVRTVQAFAGEDKAVKVYKEALSNTYKYGR 279 (1077)
Q Consensus 200 ~~~~l~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~ 279 (1077)
+..+.+++.++++++++.+..++.++..+..++..+..+++.+.++|.++|||+||+++||+.|.+++++.++++.+..+
T Consensus 384 ~lG~~al~gv~vl~v~~pl~~~~~k~~~~~~~~~~~~~D~Ri~~~~E~l~gIr~IK~~~wE~~f~~ri~~~R~~El~~l~ 463 (1560)
T PTZ00243 384 LVGWCALMAVAVLLVTLPLNGAIMKHQMAARRKIAKAADARVKATNEFFSGIRIAKFMAWEPCFVANIEDKRARELRYLR 463 (1560)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33345666666666666677777888888888888889999999999999999999999999999999999999999988
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHh
Q 001438 280 KAGLAKGLGLGSMHCVLFLSWSLLVWYVSVVVHKHISNGGESFTTMLNVVIAGLSLGQAAPDITAFIRAKAAAYPIFEMI 359 (1077)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l 359 (1077)
+.....++...+....+.++.+ +.++++.+..+.++++.+|+++.++..+..|+..++..+..+.++.+|++||.+++
T Consensus 464 ~~~~~~~~~~~~~~~~p~l~~~--~~f~~y~~~g~~Lt~~~vft~laL~~~L~~Pl~~lp~~~~~~~~a~vS~~RI~~fL 541 (1560)
T PTZ00243 464 DVQLARVATSFVNNATPTLMIA--VVFTVYYLLGHELTPEVVFPTIALLGVLRMPFFMIPWVFTTVLQFLVSIKRISTFL 541 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888877766555454444433 34556777788999999999998888889999999999999999999999999999
Q ss_pred ccCcccc----cc-c---------c--c------C-----------------------------------CCCCCCcccE
Q 001438 360 ERDTMSK----AS-S---------K--T------G-----------------------------------RKLDKLSGHI 382 (1077)
Q Consensus 360 ~~~~~~~----~~-~---------~--~------~-----------------------------------~~~~~~~~~i 382 (1077)
+.++... +. + . . + +......+.+
T Consensus 542 ~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 621 (1560)
T PTZ00243 542 ECDNATCSTVQDMEEYWREQREHSTACQLAAVLENVDVTAFVPVKLPRAPKVKTSLLSRALRMLCCEQCRPTKRHPSPSV 621 (1560)
T ss_pred cCccccccccccchhhcccccccccccccccccccccccccccccccccccccccccccchhhccccccccccccccccc
Confidence 7644100 00 0 0 0 0 0000011346
Q ss_pred EEEeEEEEcCCC-------------------------------------CCcccccceeEEecCCcEEEEEcCCCCcHHH
Q 001438 383 EFKDVSFCYPSR-------------------------------------PDVAIFDKFCLDIPAGKIVALVGGSGSGKST 425 (1077)
Q Consensus 383 ~~~~v~~~y~~~-------------------------------------~~~~~l~~isl~i~~g~~~~ivG~~GsGKST 425 (1077)
.++|+++.++.. .++++|+|+||+|++||+++|+|||||||||
T Consensus 622 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~isl~i~~G~~~~IiG~nGsGKST 701 (1560)
T PTZ00243 622 VVEDTDYGSPSSASRHIVEGGTGGGHEATPTSERSAKTPKMKTDDFFELEPKVLLRDVSVSVPRGKLTVVLGATGSGKST 701 (1560)
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccCCceeEeeeEEEECCCCEEEEECCCCCcHHH
Confidence 777877765310 1245899999999999999999999999999
Q ss_pred HHHHHhcccCCCccEEEECCeeCCCCCHHHHhhheeEEccCCCcccccHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHhc
Q 001438 426 VISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIGLVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISN 505 (1077)
Q Consensus 426 l~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~ 505 (1077)
|+++|+|+++|++|+|.+++ +|||+||+||+|++|++|||.++.+ .+.++..++.+.+++.++++.
T Consensus 702 LL~~i~G~~~~~~G~i~~~~-------------~i~yv~Q~~~l~~~Tv~enI~~~~~-~~~~~~~~~~~~~~l~~~l~~ 767 (1560)
T PTZ00243 702 LLQSLLSQFEISEGRVWAER-------------SIAYVPQQAWIMNATVRGNILFFDE-EDAARLADAVRVSQLEADLAQ 767 (1560)
T ss_pred HHHHHhcCCCCCCcEEEECC-------------eEEEEeCCCccCCCcHHHHHHcCCh-hhHHHHHHHHHHhhhHHHHHH
Confidence 99999999999999998753 6999999999999999999999864 234455666676777888999
Q ss_pred CccchhhhhcCCCCCCChHHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHH-HHHHHhCCCeEEEEccCchhHhh
Q 001438 506 LPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQE-ALDRVMVGRTTVVVAHRLSTIRN 584 (1077)
Q Consensus 506 l~~g~~t~~~~~g~~LSgGqkqri~lARal~~~p~illlDEpts~lD~~~~~~i~~-~l~~~~~~~t~i~vtH~~~~~~~ 584 (1077)
+|+|++|.+|++|.+|||||||||+||||++.+|+|+|||||||+||+++.+.+.+ ++....+|+|+|+|||+++.++.
T Consensus 768 l~~g~~t~i~~~g~~LSGGQkqRvaLARAl~~~p~illLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~~~~ 847 (1560)
T PTZ00243 768 LGGGLETEIGEKGVNLSGGQKARVSLARAVYANRDVYLLDDPLSALDAHVGERVVEECFLGALAGKTRVLATHQVHVVPR 847 (1560)
T ss_pred hhccchHHhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHHHHh
Confidence 99999999999999999999999999999999999999999999999998887755 45555578999999999999999
Q ss_pred cCEEEEEECCEEEEecChhHHhcCCCchHHHHHHHHHHhhhcCCCCCCCCCCCCccccccccccCCCCcccccc-cccch
Q 001438 585 ADVIAVVQGRKIVKTGSHEELISNPNSAYAALVQLQEAASQQSNSSQCPNMGRPLSIKFSRELSGTRTSFGASF-RSEKE 663 (1077)
Q Consensus 585 ~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 663 (1077)
||+|++|++|++++.|+++|++++ +.|..+........+..+.....+........................ .....
T Consensus 848 ad~ii~l~~G~i~~~G~~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 925 (1560)
T PTZ00243 848 ADYVVALGDGRVEFSGSSADFMRT--SLYATLAAELKENKDSKEGDADAEVAEVDAAPGGAVDHEPPVAKQEGNAEGGDG 925 (1560)
T ss_pred CCEEEEEECCEEEEecCHHHHHhC--hHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccc
Confidence 999999999999999999999864 457766543221111000000000000000000000000000000000 00000
Q ss_pred hhcccC-CCCCCCccccccchHHHHHhhcccchHHHHHHHHHHHHHhhHHhHHHHHHHHHHHhhccC-chhh--HHHHHH
Q 001438 664 SVLSHG-AADATEPATAKHVSAIKLYSMVRPDWTYGVCGTICAIIAGAQMPLFALGVSQALVAYYMD-WDTT--QREVKK 739 (1077)
Q Consensus 664 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~ 739 (1077)
...... ....+++.+..+...++.| +.|+........+......++...+......+|.. |... ......
T Consensus 926 ~~~~~~~~~l~~~e~~~~g~v~~~~y------~~Y~~~~g~~~~~~~~l~~~~~~~~~~~~~~~wl~~w~~~~~~~~~~~ 999 (1560)
T PTZ00243 926 AALDAAAGRLMTREEKASGSVPWSTY------VAYLRFCGGLHAAGFVLATFAVTELVTVSSGVWLSMWSTRSFKLSAAT 999 (1560)
T ss_pred cccccccchhhhHHHHhcCcccHHHH------HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCccc
Confidence 000000 0000011111122223222 34433221111111110111111111222334432 2211 112234
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccccCCchhHHHHHhhcHHHHHHHHHhhHH
Q 001438 740 ITILFCCAAVITVIVHAIEHLSFGIMGERLTLRVREKMFSAILSNEIGWFDEMDNSSSILASRLESDATLLRTIVVDRST 819 (1077)
Q Consensus 740 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~Lr~~l~~~llr~p~~FFD~~~~~~G~IlnR~s~D~~~i~~~l~~~l~ 819 (1077)
|..+|+++.++..++.+++.+.....+.+.++++|+++|++++++|++|||. +|+|+|+|||++|++.+|..++..+.
T Consensus 1000 ~l~~y~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ffd~--~~~G~ilnR~s~Di~~id~~l~~~l~ 1077 (1560)
T PTZ00243 1000 YLYVYLGIVLLGTFSVPLRFFLSYEAMRRGSRNMHRDLLRSVSRGTMSFFDT--TPLGRILNRFSRDIDILDNTLPMSYL 1077 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhccC--CCccHHHHHHHhhHHHHHHHHHHHHH
Confidence 5667777777777777777777777888899999999999999999999995 99999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHH----HHHHHHhHHHHHHHcchHHHHHh
Q 001438 820 ILIQNFGLVTASFVIAFILNWRITLVVVATYPLIISGHISEKLFFQGYGGNLS----KAYLKANMLAAEAVSNIRTVAAF 895 (1077)
Q Consensus 820 ~~~~~~~~~~~~i~i~~~~~w~l~l~~l~~~Pl~i~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~Etl~Gi~tIrAf 895 (1077)
.++..++.++++++++++.+|. ++++++|+++++..+..+ +.+..++.+ ...+....+++|+++|++|||+|
T Consensus 1078 ~~~~~~~~~i~~li~~~~~~p~---~~~~~i~~~~~~~~i~~~-~~~~~r~~~r~~~~~~s~l~s~~~E~l~G~~tIraf 1153 (1560)
T PTZ00243 1078 YLLQCLFSICSSILVTSASQPF---VLVALVPCGYLYYRLMQF-YNSANREIRRIKSVAKSPVFTLLEEALQGSATITAY 1153 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhcHHHHHHHHHHcCHHHHHhC
Confidence 9999999999999999988883 344455555444333332 222333333 34455678889999999999999
Q ss_pred cchHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hhcCCCCHHHHHHHHHHHHHHHHHH
Q 001438 896 CSEDKVLELYSRELVEPSKRSFIRGQIAGIFYGISQFFIFSSYGLALWYGSVL--MGKELASFKSVMKSFMVLIVTALAM 973 (1077)
Q Consensus 896 ~~e~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l--~~~~~~~~~~~~~~~~~~~~~~~~~ 973 (1077)
+.|++|.++|.+.++.+.+..+.......+.....+++......++.+++... ...+..+++.+..++.+......++
T Consensus 1154 ~~e~~~~~~~~~~~d~~~~~~~~~~~~~~w~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~l~~a~~l~~~l 1233 (1560)
T PTZ00243 1154 GKAHLVMQEALRRLDVVYSCSYLENVANRWLGVRVEFLSNIVVTVIALIGVIGTMLRATSQEIGLVSLSLTMAMQTTATL 1233 (1560)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999988776655555555555554444444433444332 2334467776666666667777888
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHcCCCCcc-C---------------------------CCCc---ccccccccEEEee
Q 001438 974 GETLALVPDLLKGNQMAASVFEVLDRKTQVI-G---------------------------DIGE---ELTNVEGTIELRG 1022 (1077)
Q Consensus 974 ~~~~~~~~~~~~~~~a~~ri~~~l~~~~~~~-~---------------------------~~~~---~~~~~~G~I~f~n 1022 (1077)
..+.....++++++.+.+|++++++..++.+ . ..+. +.++.+|+|+|+|
T Consensus 1234 ~~l~~~~~~le~~~~s~eRi~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~f~n 1313 (1560)
T PTZ00243 1234 NWLVRQVATVEADMNSVERLLYYTDEVPHEDMPELDEEVDALERRTGMAADVTGTVVIEPASPTSAAPHPVQAGSLVFEG 1313 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccccccccccccccccccccccccccccCCCcccCCCCCCCCeEEEEE
Confidence 8889999999999999999999997433211 0 0000 1123569999999
Q ss_pred eeeeCCCCCcccccccceeeeeCCCEEEEECCCCCCHHHHHHHHhhccCCCCCCC
Q 001438 1023 VHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKA 1077 (1077)
Q Consensus 1023 Vsf~Y~~~~~~~VLk~vsl~I~~GekVaIVGrTGsGKSTLi~lL~Rfyd~~~G~i 1077 (1077)
|+|+|+++ .++|||||||+|+||||||||||||||||||+++|+|+|||++|+|
T Consensus 1314 Vsf~Y~~~-~~~vL~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~p~~G~I 1367 (1560)
T PTZ00243 1314 VQMRYREG-LPLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEI 1367 (1560)
T ss_pred EEEEeCCC-CCceeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEE
Confidence 99999764 2458999999999999999999999999999999999999999986
|
|
| >TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-105 Score=1051.05 Aligned_cols=987 Identities=18% Similarity=0.222 Sum_probs=664.4
Q ss_pred hhhHHHHHHhhchhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcccCCchhhhhHHHHHHHHHHHHHHHHHHHHH
Q 001438 40 SVSLFKLFAFADFYDYILMSLGSIGACVHGVSVPVFFIFFGKLINIIGLAYLFPKTASHKVAKYSLDFVYLSVAILFSSW 119 (1077)
Q Consensus 40 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (1077)
.+++.+.+..+.++.+...++..++..+..+++|+ +++.+++.+.+.. . ........++..++++.++..++..
T Consensus 67 ~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~P~---ll~~li~~~~~~~--~-~~~~~~~~l~~~~~~~~~~~~l~~~ 140 (1490)
T TIGR01271 67 NPKLLNALRRCFFWRFVFYGILLYFGEATKAVQPL---LLGRIIASYDPFN--A-PEREIAYYLALGLCLLFIVRTLLLH 140 (1490)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHhccCC--C-CchhHHHHHHHHHHHHHHHHHHHHH
Confidence 34566655445455544444444555556667775 5678887652110 0 0001111122222222233333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhccCCChhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001438 120 IEVSCWMYTGERQAAKMRMAYLRSMLNQDISLFDTEASTGEVISAITSDIIVVQDALSEKVGNFMHYISRFLGGFIIGFA 199 (1077)
Q Consensus 120 ~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~f~~~~~~G~i~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (1077)
...+.....+.++-..+...+|+|+++.+...+++ .++|+++|++++|++++.+.+... ..+....+.+++++++++.
T Consensus 141 ~~~~~~~~~~~~~r~~L~~~iy~K~L~l~~~~~~~-~~~g~i~nl~s~Dv~~i~~~~~~~-~~~~~~pi~i~~~~~lL~~ 218 (1490)
T TIGR01271 141 PAIFGLHHLGMQMRIALFSLIYKKTLKLSSRVLDK-ISTGQLVSLLSNNLNKFDEGLALA-HFVWIAPLQVILLMGLIWE 218 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhcC-CCHHHHHHHHHHhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 23333333444444555555699999999998887 489999999999999999976421 2222333333333333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHH
Q 001438 200 RVWQISLVTLSIVPLIALAGGMYAYVTIGLIARVRKSYVKAGEIAEEVIGNVRTVQAFAGEDKAVKVYKEALSNTYKYGR 279 (1077)
Q Consensus 200 ~~~~l~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~ 279 (1077)
.....+++.++++++++.+..++.+...+..++.++..+++.+.++|.++|||+||+|+||+.|.+++++.++++.+..+
T Consensus 219 ~~G~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~E~l~~ik~IK~~~~E~~~~~~i~~~R~~El~~~~ 298 (1490)
T TIGR01271 219 LLEVNGFCGLGFLILLALFQACLGQKMMPYRDKRAGKISERLAITSEIIENIQSVKAYCWEEAMEKIIKNIRQDELKLTR 298 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 34445667777778888888888899989999999999999999999999999999999999999999999999999988
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHHH
Q 001438 280 KAGLAKGLGLGSMHCVLFLSWSLLVWYVSVVVHKHISNGGESFTTMLNVVIAGLSLG-QAAPDITAFIRAKAAAYPIFEM 358 (1077)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~g~~~~~~~~~~~~~~~l~-~~~~~~~~~~~~~~s~~ri~~~ 358 (1077)
+...+..+...+..+... .+.++.++.+.+..+ .+++.+|+++.++..+..++. .++..+..+.++.++++||.++
T Consensus 299 ~~~~~~~~~~~~~~~~~~--~~~~~~f~~y~~~~~-~~~~~~ft~lal~~lL~~~l~~~lp~~~~~~~~a~~s~~RI~~f 375 (1490)
T TIGR01271 299 KIAYLRYFYSSAFFFSGF--FVVFLSVVPYALIKG-IILRRIFTTISYCIVLRMTVTRQFPGAIQTWYDSLGAITKIQDF 375 (1490)
T ss_pred HHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 887776554443333332 234455566665544 678999998777777666764 5777888999999999999999
Q ss_pred hccCcccccccccCCCCCCCcccEEEEeEEEEcCCCC-------------------------------CcccccceeEEe
Q 001438 359 IERDTMSKASSKTGRKLDKLSGHIEFKDVSFCYPSRP-------------------------------DVAIFDKFCLDI 407 (1077)
Q Consensus 359 l~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~-------------------------------~~~~l~~isl~i 407 (1077)
++.++..+. . . ......++++|++|.|+... .+++|+|+||+|
T Consensus 376 L~~~e~~~~-~---~--~~~~~~i~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~i~l~i 449 (1490)
T TIGR01271 376 LCKEEYKTL-E---Y--NLTTTEVEMVNVTASWDEGIGELFEKIKQNNKARKQPNGDDGLFFSNFSLYVTPVLKNISFKL 449 (1490)
T ss_pred hcCcccccc-c---c--cCCCCceEEecceEecCCccccccccccccccccccccccccccccccccccCcceeeeEEEE
Confidence 986543211 0 0 01123589999999995310 135899999999
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHHHhhheeEEccCCCcccccHHHHHhcCCCCCCH
Q 001438 408 PAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIGLVNQEPALFATTIRENILYGKDDATM 487 (1077)
Q Consensus 408 ~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~~ni~~~~~~~~~ 487 (1077)
++||+++|+||||||||||+++|+|+++|++|+|.++| +|+||+|+||+|++||+|||.||.+ .+.
T Consensus 450 ~~G~~~~I~G~~GsGKSTLl~~l~G~~~~~~G~i~~~g-------------~iayv~Q~~~l~~~Ti~eNI~~g~~-~~~ 515 (1490)
T TIGR01271 450 EKGQLLAVAGSTGSGKSSLLMMIMGELEPSEGKIKHSG-------------RISFSPQTSWIMPGTIKDNIIFGLS-YDE 515 (1490)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECC-------------EEEEEeCCCccCCccHHHHHHhccc-cch
Confidence 99999999999999999999999999999999999998 4999999999999999999999864 333
Q ss_pred HHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHH-HHHHH
Q 001438 488 EEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQE-ALDRV 566 (1077)
Q Consensus 488 ~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~~~p~illlDEpts~lD~~~~~~i~~-~l~~~ 566 (1077)
++..++++.+++.++++.+|+|++|.+|++|.+|||||||||+||||++++|+|+||||||||||+++++.+.+ ++.+.
T Consensus 516 ~~~~~~~~~~~L~~~l~~l~~g~~t~vg~~g~~LSgGqkqRi~lARAl~~~~~illLDep~saLD~~~~~~i~~~~l~~~ 595 (1490)
T TIGR01271 516 YRYTSVIKACQLEEDIALFPEKDKTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEKEIFESCLCKL 595 (1490)
T ss_pred HHHHHHHHHHhHHHHHHhccccccccccCcCCCcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHH
Confidence 33444555556677899999999999999999999999999999999999999999999999999999999987 56777
Q ss_pred hCCCeEEEEccCchhHhhcCEEEEEECCEEEEecChhHHhcCCCchHHHHHHHHHHhh----h-c-----C-------C-
Q 001438 567 MVGRTTVVVAHRLSTIRNADVIAVVQGRKIVKTGSHEELISNPNSAYAALVQLQEAAS----Q-Q-----S-------N- 628 (1077)
Q Consensus 567 ~~~~t~i~vtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~~~~----~-~-----~-------~- 628 (1077)
.+++|+|+|||+++.++.||+|++|++|++++.|+++++... ++.|...+....... + . + .
T Consensus 596 ~~~~tvilvtH~~~~~~~ad~ii~l~~g~i~~~g~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 674 (1490)
T TIGR01271 596 MSNKTRILVTSKLEHLKKADKILLLHEGVCYFYGTFSELQAK-RPDFSSLLLGLEAFDNFSAERRNSILTETLRRVSIDG 674 (1490)
T ss_pred hcCCeEEEEeCChHHHHhCCEEEEEECCEEEEEcCHHHHHhc-ChHHHHHHhcccccccccccccccccccccccccccc
Confidence 789999999999999999999999999999999999999875 556666553110000 0 0 0 0
Q ss_pred ---------C------CCCCC--CCCCcc---c----------------c---ccccccCCCCc-------cc------c
Q 001438 629 ---------S------SQCPN--MGRPLS---I----------------K---FSRELSGTRTS-------FG------A 656 (1077)
Q Consensus 629 ---------~------~~~~~--~~~~~~---~----------------~---~~~~~~~~~~~-------~~------~ 656 (1077)
. .+.+. ..++.. . . ...+....... .. .
T Consensus 675 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 754 (1490)
T TIGR01271 675 DSTVFSGPETIKQSFKQPPPEFAEKRKQSIILNPIASARKFSFVQMGPQKAQATTIEDAVREPSERKFSLVPEDEQGEES 754 (1490)
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhcccccccccccccccccccc
Confidence 0 00000 000000 0 0 00000000000 00 0
Q ss_pred cccc----------------------c-------c-h---h--------------hc--------ccC-----CCC----
Q 001438 657 SFRS----------------------E-------K-E---S--------------VL--------SHG-----AAD---- 672 (1077)
Q Consensus 657 ~~~~----------------------~-------~-~---~--------------~~--------~~~-----~~~---- 672 (1077)
.... . . . . .. ..+ ..+
T Consensus 755 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 834 (1490)
T TIGR01271 755 LPRGNQYHHGLQHQAQRRQSVLQLMTHSNRGENRREQLQTSFRKKSSITQQNELASELDIYSRRLSKDSVYEISEEINEE 834 (1490)
T ss_pred cccccccccccccccccccchhhcccccccccccccccccccccccccccccccccccccccccccccccccccccchhh
Confidence 0000 0 0 0 0 00 000 000
Q ss_pred ------CCCccccccchHHHHHhhcccchHHHHHHHHHHHHHhhHHhHHHHHHHHHHHhhcc-Cchhh-------H-H--
Q 001438 673 ------ATEPATAKHVSAIKLYSMVRPDWTYGVCGTICAIIAGAQMPLFALGVSQALVAYYM-DWDTT-------Q-R-- 735 (1077)
Q Consensus 673 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-------~-~-- 735 (1077)
.+++....+...+++| +.|+..+.....+..++...+...+...+.++|. .|+.. . .
T Consensus 835 ~~~~~~~~~e~~~~g~v~~~vY------~~Y~~~~g~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~~~~~ 908 (1490)
T TIGR01271 835 DLKECFADERENVFETTTWNTY------LRYITTNRNLVFVLIFCLVIFLAEVAASLLGLWLITDNPSAPNYVDQQHANA 908 (1490)
T ss_pred hhhhhhhHHHHhhcCcccHHHH------HHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhHHHHhcccccccccccccccC
Confidence 0000011122223333 4444332111111111111122233444445555 33210 0 0
Q ss_pred -------------HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccccCCchhHHH
Q 001438 736 -------------EVKKI-TILFCCAAVITVIVHAIEHLSFGIMGERLTLRVREKMFSAILSNEIGWFDEMDNSSSILAS 801 (1077)
Q Consensus 736 -------------~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~Lr~~l~~~llr~p~~FFD~~~~~~G~Iln 801 (1077)
...+| .++|++++++..++.+++.+++...+.++++++|.+++++++++|++|||. +|+|+|+|
T Consensus 909 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ff~~--~~~G~iln 986 (1490)
T TIGR01271 909 SSPDVQKPVIITPTSAYYIFYIYVGTADSVLALGFFRGLPLVHTLLTVSKRLHEQMLHSVLQAPMAVLNT--MKAGRILN 986 (1490)
T ss_pred CCccccccccccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCC--CChhHHHH
Confidence 11122 334445555566677889999999999999999999999999999999995 99999999
Q ss_pred HHhhcHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhH----HHHHHH
Q 001438 802 RLESDATLLRTIVVDRSTILIQNFGLVTASFVIAFILNWRITLVVVATYPLIISGHISEKLFFQGYGGNL----SKAYLK 877 (1077)
Q Consensus 802 R~s~D~~~i~~~l~~~l~~~~~~~~~~~~~i~i~~~~~w~l~l~~l~~~Pl~i~~~~~~~~~~~~~~~~~----~~~~~~ 877 (1077)
||++|++.+|..++..+..++..++.+++.++++++.+|.+. ++++|++++++.+..++.+. .++. ....+.
T Consensus 987 Rfs~Di~~id~~l~~~~~~~~~~~~~~i~~l~~i~~~~p~l~---l~~~~l~~~~~~~~~~~~~~-~r~l~~~~~~~~s~ 1062 (1490)
T TIGR01271 987 RFTKDMAIIDDMLPLTLFDFIQLTLIVLGAIFVVSVLQPYIF---IAAIPVAVIFIMLRAYFLRT-SQQLKQLESEARSP 1062 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhH
Confidence 999999999999999999999999999999999999888553 34555555544444333332 2322 223344
Q ss_pred HhHHHHHHHcchHHHHHhcchHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHhhcCCCC
Q 001438 878 ANMLAAEAVSNIRTVAAFCSEDKVLELYSRELVEPSKRSFIRGQIAGIFYGISQFFIFSSYGL--ALWYGSVLMGKELAS 955 (1077)
Q Consensus 878 ~~~~~~Etl~Gi~tIrAf~~e~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~g~~l~~~~~~~ 955 (1077)
...++.|+++|+.|||||++|++|.++|.+..+.+.+..+.......+.....+.+....... .++++.. ...
T Consensus 1063 l~~~~~Etl~Gl~tIraf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~i~~~~~~~~~~l~~~~~-----~~~ 1137 (1490)
T TIGR01271 1063 IFSHLITSLKGLWTIRAFGRQSYFETLFHKALNLHTANWFLYLSTLRWFQMRIDIIFVFFFIAVTFIAIGTN-----QDG 1137 (1490)
T ss_pred HHHHHHHHhcCHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----cCC
Confidence 557889999999999999999999999999999876655544333333332333222211111 1122221 122
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHcCCCCccCC------------------CCccccccccc
Q 001438 956 FKSVMKSFMVLIVTALAMGETLALVPDLLKGNQMAASVFEVLDRKTQVIGD------------------IGEELTNVEGT 1017 (1077)
Q Consensus 956 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~------------------~~~~~~~~~G~ 1017 (1077)
.+.+..++.+......++..+.....+++..+.+.+|+.++++.+++.... .+++.||.+|+
T Consensus 1138 ~g~~g~~l~~~~~l~~~l~~l~~~~~~le~~~~s~eRi~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~wp~~g~ 1217 (1490)
T TIGR01271 1138 EGEVGIILTLAMNILSTLQWAVNSSIDVDGLMRSVSRVFKFIDLPQEEPRPSGGGGKYQLSTVLVIENPHAQKCWPSGGQ 1217 (1490)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccccccccccccCCCCCCCCCCCe
Confidence 333333333344444556666677788999999999999999876653311 01123567899
Q ss_pred EEEeeeeeeCCCCCcccccccceeeeeCCCEEEEECCCCCCHHHHHHHHhhccCCCCCCC
Q 001438 1018 IELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKA 1077 (1077)
Q Consensus 1018 I~f~nVsf~Y~~~~~~~VLk~vsl~I~~GekVaIVGrTGsGKSTLi~lL~Rfyd~~~G~i 1077 (1077)
|+|+||+|+|++. .++||+||||+|+||||||||||||||||||+++|+|+|+ .+|+|
T Consensus 1218 I~f~nVs~~Y~~~-~~~vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl~~-~~G~I 1275 (1490)
T TIGR01271 1218 MDVQGLTAKYTEA-GRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLS-TEGEI 1275 (1490)
T ss_pred EEEEEEEEEeCCC-CcceeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEE
Confidence 9999999999764 3468999999999999999999999999999999999998 78976
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. |
| >KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-106 Score=921.77 Aligned_cols=573 Identities=40% Similarity=0.625 Sum_probs=532.9
Q ss_pred hHHHHHHhhchhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 001438 42 SLFKLFAFADFYDYILMSLGSIGACVHGVSVPVFFIFFGKLINIIGLAYLFPKTASHKVAKYSLDFVYLSVAILFSSWIE 121 (1077)
Q Consensus 42 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (1077)
.+++++.++++ +|.++..+.++.++......+.|.++|+++|.+... + .........+..+.++.++..++.+++
T Consensus 134 ~~~rl~~l~~~-~~~~l~~a~~~l~vss~~~~~iP~~~G~~id~~~~~--~--~~~~~~~~~~~~l~~l~~~~a~~~~~r 208 (716)
T KOG0058|consen 134 LLKRLLGLLKP-EWKWLVAAFVLLLVSSLINMFIPYYLGKLIDTISEG--D--DSADALKRACTILLGLFLIGALANAIR 208 (716)
T ss_pred HHHHHHHHhch-hHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhc--c--chHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67788888875 455666666666666666666777899999987541 1 112334445667777888889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCchhhccCCChhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001438 122 VSCWMYTGERQAAKMRMAYLRSMLNQDISLFDTEASTGEVISAITSDIIVVQDALSEKVGNFMHYISRFLGGFIIGFARV 201 (1077)
Q Consensus 122 ~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~f~~~~~~G~i~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (1077)
.+++.+.++++..++|.++|+++++|+++|||.+ .+||++||++.|++.+.+.++..+...+.++++.++++.+|++++
T Consensus 209 ~~~~~~a~~rv~~rlR~~lF~sil~QdiaFFD~n-ktGeL~SRLtsD~~~vs~svs~nls~~lR~~~~~~g~~~~M~~~S 287 (716)
T KOG0058|consen 209 GGLLQYAGERVVARLRTDLFRSLLRQDIAFFDEN-KTGELISRLTSDTQIVSNSVSQNLSDGLRNLVQGFGGLGFMFSLS 287 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccC-CccHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhh
Confidence 9999999999999999999999999999999995 899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHH
Q 001438 202 WQISLVTLSIVPLIALAGGMYAYVTIGLIARVRKSYVKAGEIAEEVIGNVRTVQAFAGEDKAVKVYKEALSNTYKYGRKA 281 (1077)
Q Consensus 202 ~~l~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~ 281 (1077)
|+|++++++.+|+++++..+++++.++..++.|+..++++++.+|.+++|||||+|+.|+.+.++|.+..++..+..+|.
T Consensus 288 ~~Ltlv~~i~~P~v~~~~~~yG~~~rklS~~~Q~a~A~a~~vaeE~ls~~rTVRsfa~E~~E~~ry~~~l~~~~~i~~k~ 367 (716)
T KOG0058|consen 288 WRLTLVTLIVVPIVALVAKIYGKYLRKLSKQTQDALARANQVAEEVLSAMRTVRSFAAEEQEVKRYNKKLREVLKLSKKE 367 (716)
T ss_pred HHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcc
Q 001438 282 GLAKGLGLGSMHCVLFLSWSLLVWYVSVVVHKHISNGGESFTTMLNVVIAGLSLGQAAPDITAFIRAKAAAYPIFEMIER 361 (1077)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~ 361 (1077)
+...++++....+...+..+.+++||++++..|.+|.|.+.++++|......++..+...++.++++..|.+|+++++|+
T Consensus 368 a~a~~~f~~~~~~~~~~~~~siL~~Gg~Lv~~g~mt~g~L~sFllY~~~~g~sl~~ls~~ys~lmkgvGAs~rvFel~dr 447 (716)
T KOG0058|consen 368 AVAYGIFFGSTNLLGNLAVLSILFYGGHLVLTGSLTSGALSSFLLYQVQLGSSLSGLSSFYSELMKGVGASERVFELMDR 447 (716)
T ss_pred HHHhhHhHhHHHHHHhHHHHHHHHhccchhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhcc
Confidence 99999999988899999999999999999999999999999999999988899999999999999999999999999999
Q ss_pred CcccccccccCC-CCCCCcccEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccE
Q 001438 362 DTMSKASSKTGR-KLDKLSGHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGE 440 (1077)
Q Consensus 362 ~~~~~~~~~~~~-~~~~~~~~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~ 440 (1077)
+|..+.. +. .+....|.|+|+||+|+||.+|+.++|+|+||+|+|||.+|+||||||||||++++|.++|+|++|+
T Consensus 448 ~P~i~~~---G~~~p~~~~G~IeF~~VsFaYP~Rp~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~PtsG~ 524 (716)
T KOG0058|consen 448 KPRIPLT---GTLAPDHLQGVIEFEDVSFAYPTRPDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPTSGR 524 (716)
T ss_pred CCCCCCC---CccccccccceEEEEEeeeecCCCCCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCe
Confidence 8876542 22 2225679999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEECCeeCCCCCHHHHhhheeEEccCCCcccccHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCC
Q 001438 441 ILLDGNNIKGLDLKWLRQQIGLVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQ 520 (1077)
Q Consensus 441 i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~ 520 (1077)
|.+||+||++++..+||++||+|.|||.||++||+|||.||.+..++|++..|++.+++++||.++|+||||.|||+|.+
T Consensus 525 IllDG~~i~~~~~~~lr~~Ig~V~QEPvLFs~sI~eNI~YG~~~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~q 604 (716)
T KOG0058|consen 525 ILLDGVPISDINHKYLRRKIGLVGQEPVLFSGSIRENIAYGLDNATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQ 604 (716)
T ss_pred EEECCeehhhcCHHHHHHHeeeeeccceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEccCchhHhhcCEEEEEECCEEEEec
Q 001438 521 LSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRNADVIAVVQGRKIVKTG 600 (1077)
Q Consensus 521 LSgGqkqri~lARal~~~p~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~vtH~~~~~~~~d~i~~l~~G~i~~~g 600 (1077)
|||||||||||||||++||.||||||+|||||.++|..++++|.+..+++|||+|+||++++++||+|+|+++|+++|.|
T Consensus 605 LSGGQKQRIAIARALlr~P~VLILDEATSALDaeSE~lVq~aL~~~~~~rTVlvIAHRLSTV~~Ad~Ivvi~~G~V~E~G 684 (716)
T KOG0058|consen 605 LSGGQKQRIAIARALLRNPRVLILDEATSALDAESEYLVQEALDRLMQGRTVLVIAHRLSTVRHADQIVVIDKGRVVEMG 684 (716)
T ss_pred ccchHHHHHHHHHHHhcCCCEEEEechhhhcchhhHHHHHHHHHHhhcCCeEEEEehhhhHhhhccEEEEEcCCeEEecc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhHHhcCCCchHHHHHHHHHHh
Q 001438 601 SHEELISNPNSAYAALVQLQEAA 623 (1077)
Q Consensus 601 ~~~~l~~~~~~~~~~~~~~~~~~ 623 (1077)
+|+||++++++.|.++++.|...
T Consensus 685 ~h~eLl~~~~gly~~Lv~~q~~~ 707 (716)
T KOG0058|consen 685 THDELLSKPNGLYAKLVQRQLDS 707 (716)
T ss_pred cHHHHhhCcccHHHHHHHHhccc
Confidence 99999999889999999887643
|
|
| >KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-103 Score=947.86 Aligned_cols=579 Identities=43% Similarity=0.709 Sum_probs=545.8
Q ss_pred hhhhHHHHHHhhchhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcccCCchhhhhHHHHHHHHHHHHHHHHHHHH
Q 001438 39 RSVSLFKLFAFADFYDYILMSLGSIGACVHGVSVPVFFIFFGKLINIIGLAYLFPKTASHKVAKYSLDFVYLSVAILFSS 118 (1077)
Q Consensus 39 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (1077)
...++++++++.++ +|.++++|++++++.|...|++.+++++++..+... +++........|++++++++++..++.
T Consensus 648 ~~~s~~~i~k~~~p-e~~~l~lG~i~a~i~G~~~P~fa~~~s~~~~~f~~~--~~~~~~~~~~~~al~f~~l~~~~~i~~ 724 (1228)
T KOG0055|consen 648 EKVSFWRIFKLNKP-EWPYLLLGSLGAAIRGATYPLFAYVFSQVLEAFYPP--DDDELKREVRAWALIFLGLGIVSGITN 724 (1228)
T ss_pred ccccHHHHHHhccc-hhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhCC--ChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46689999998775 789999999999999999999999999999987532 112222333348899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhccCCChhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001438 119 WIEVSCWMYTGERQAAKMRMAYLRSMLNQDISLFDTEASTGEVISAITSDIIVVQDALSEKVGNFMHYISRFLGGFIIGF 198 (1077)
Q Consensus 119 ~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~f~~~~~~G~i~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (1077)
+++++++.+.++++..|+|...|++++++++.|||...++|.|.+|+.+|...++..+++.+..+++++..++++++++|
T Consensus 725 ~~q~~~f~~~ge~Lt~R~R~~~F~~ll~qd~~wFD~~~nsg~l~~RLa~Da~~vr~~v~~rl~~vv~~~~~~~~~iiiaf 804 (1228)
T KOG0055|consen 725 FLQHYFFGIAGEKLTKRLRSMMFRALLRQEVGWFDDPENSGALSSRLATDASNVRAAVGDRLSLVVQNIAAVIIGIIIAF 804 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCCccchHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999755559999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHH
Q 001438 199 ARVWQISLVTLSIVPLIALAGGMYAYVTIGLIARVRKSYVKAGEIAEEVIGNVRTVQAFAGEDKAVKVYKEALSNTYKYG 278 (1077)
Q Consensus 199 ~~~~~l~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~ 278 (1077)
+++|+|+++++++.|++++..+...+++.....+..+.+.+.++++.|++++||||++|+.|+++.+.|.+..++..+..
T Consensus 805 ~~~W~lalv~la~~Pll~~~~~~~~~~~~~~~~~~~~~~~ea~~iA~eai~NIrTV~al~~e~~~~~~y~~~l~~p~~~~ 884 (1228)
T KOG0055|consen 805 IYGWRLALVVLATFPLLILSGYLQKKFLKGFSKDDKKAYEEASKIAIEAVSNIRTVAALCAEEKFMELYKEELEKPRKSS 884 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 001438 279 RKAGLAKGLGLGSMHCVLFLSWSLLVWYVSVVVHKHISNGGESFTTMLNVVIAGLSLGQAAPDITAFIRAKAAAYPIFEM 358 (1077)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~ 358 (1077)
.|.+.+.++.+++.+++.++++++.+|||++++.+|.+++.++|.++..+.+....+++.....+.+.+|+.|+.+++++
T Consensus 885 ~~~~~i~gl~f~~sqs~~~~~~A~~f~~G~~Li~~g~~~~~~~~~vf~~l~~ta~~~~~~~s~~Pd~~ka~~Aa~~iF~i 964 (1228)
T KOG0055|consen 885 FKRGLISGLGFGFSQSLLFFVYALSFWYGARLISNGEMTFEDVFRVFMALSFTAMALGQASSYAPDISKAKIAAGSIFEI 964 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999998888888888899899999999999999999999
Q ss_pred hccCcccccccccCCCCCCCcccEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCc
Q 001438 359 IERDTMSKASSKTGRKLDKLSGHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLS 438 (1077)
Q Consensus 359 l~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~ 438 (1077)
+++++.++..++.+...++.+|+|+++||+|+||++|+.++|+|+||+|++||.+|+||||||||||++.+|.|+|+|++
T Consensus 965 ~dr~~~i~~~~~~~~~~~~~~G~I~~~~V~F~YPsRP~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYdp~~ 1044 (1228)
T KOG0055|consen 965 LDRKPTIDPDSTSGGKLPNVKGDIEFRNVSFAYPTRPDVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFYDPDA 1044 (1228)
T ss_pred hcCCCCCCCCCCCCCccccceeEEEEeeeEeeCCCCCCchhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHHhcCCCC
Confidence 99988766544344445667899999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEECCeeCCCCCHHHHhhheeEEccCCCcccccHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCC
Q 001438 439 GEILLDGNNIKGLDLKWLRQQIGLVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERG 518 (1077)
Q Consensus 439 G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g 518 (1077)
|.|.+||+|+++++++++|++||.|+|||.||++||||||.||.+..+.+|+.+|++++++|+||..||+||||.+||+|
T Consensus 1045 G~V~IDg~dik~lnl~~LR~~i~lVsQEP~LF~~TIrENI~YG~~~vs~~eIi~Aak~ANaH~FI~sLP~GyDT~vGerG 1124 (1228)
T KOG0055|consen 1045 GKVKIDGVDIKDLNLKWLRKQIGLVSQEPVLFNGTIRENIAYGSEEVSEEEIIEAAKLANAHNFISSLPQGYDTRVGERG 1124 (1228)
T ss_pred CeEEECCcccccCCHHHHHHhcceeccCchhhcccHHHHHhccCCCCCHHHHHHHHHHhhhHHHHhcCcCcccCccCccc
Confidence 99999999999999999999999999999999999999999996568999999999999999999999999999999999
Q ss_pred CCCChHHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEccCchhHhhcCEEEEEECCEEEE
Q 001438 519 IQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRNADVIAVVQGRKIVK 598 (1077)
Q Consensus 519 ~~LSgGqkqri~lARal~~~p~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~vtH~~~~~~~~d~i~~l~~G~i~~ 598 (1077)
.+||||||||||||||+++||+||||||+|||||.++|+.++++|++.+.|+|+|+|+||++++++||.|+|++||+|+|
T Consensus 1125 ~QLSGGQKQRIAIARAilRnPkILLLDEATSALDseSErvVQeALd~a~~gRT~IvIAHRLSTIqnaD~I~Vi~~G~VvE 1204 (1228)
T KOG0055|consen 1125 VQLSGGQKQRIAIARAILRNPKILLLDEATSALDSESERVVQEALDRAMEGRTTIVIAHRLSTIQNADVIAVLKNGKVVE 1204 (1228)
T ss_pred CcCCchHHHHHHHHHHHHcCCCeeeeeccchhhhhhhHHHHHHHHHHhhcCCcEEEEecchhhhhcCCEEEEEECCEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecChhHHhcCCCchHHHHHHHHH
Q 001438 599 TGSHEELISNPNSAYAALVQLQE 621 (1077)
Q Consensus 599 ~g~~~~l~~~~~~~~~~~~~~~~ 621 (1077)
+|+|+||+++ +|.|.+|++.|.
T Consensus 1205 ~GtH~~L~~~-~G~Y~~Lv~~q~ 1226 (1228)
T KOG0055|consen 1205 QGTHDELLAK-RGIYFRLVQLQS 1226 (1228)
T ss_pred cccHHHHHhC-CCchHHHhhhcc
Confidence 9999999995 999999998764
|
|
| >COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-89 Score=824.39 Aligned_cols=550 Identities=31% Similarity=0.461 Sum_probs=505.2
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001438 58 MSLGSIGACVHGVSVPVFFIFFGKLINIIGLAYLFPKTASHKVAKYSLDFVYLSVAILFSSWIEVSCWMYTGERQAAKMR 137 (1077)
Q Consensus 58 ~~~~~~~~~~~~~~~p~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr 137 (1077)
+++..++..+.+++.|+ ++..++|.+.+.. ..+.+...++.+++.++...++.+++.+...+.+.|+..++-
T Consensus 159 v~~~sl~l~i~~l~~p~---~~q~viD~Vl~~~-----~~~tL~vl~ig~~~~~l~~~~l~~lr~~~~~~~~~rld~~l~ 230 (709)
T COG2274 159 VLLASLLLQLLALATPL---FSQIVIDKVLPDA-----SRSTLTVLAIGLLLAALFEALLRLLRTYLIAHLGKRLDLELS 230 (709)
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHhhhccC-----chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 34444555556666675 5677899876432 234455566667777888889999999999999999999999
Q ss_pred HHHHHHHHhCCchhhccCCChhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001438 138 MAYLRSMLNQDISLFDTEASTGEVISAITSDIIVVQDALSEKVGNFMHYISRFLGGFIIGFARVWQISLVTLSIVPLIAL 217 (1077)
Q Consensus 138 ~~~~~~ll~~~~~~f~~~~~~G~i~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~l~~~pl~~~ 217 (1077)
.++|+|++++|++||.+ +++|++++|+ +|.++|+++++..+...+.++.++++.+++|++++|.|++++++.+|+.++
T Consensus 231 ~~~~~hll~Lpl~~f~~-r~~Ge~~sR~-~el~~Ir~flt~~~l~~iiD~~~~~i~l~vm~~ys~~L~li~l~~~~l~~l 308 (709)
T COG2274 231 GRFFRHLLRLPLSYFEK-RSVGEIISRV-RELEQIREFLTGSILTLIIDLLFALIFLAVMFLYSWKLTLIVLAAIPLNVL 308 (709)
T ss_pred HHHHHHHHcCcHHHccC-CChhhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998 4999999999 599999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001438 218 AGGMYAYVTIGLIARVRKSYVKAGEIAEEVIGNVRTVQAFAGEDKAVKVYKEALSNTYKYGRKAGLAKGLGLGSMHCVLF 297 (1077)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (1077)
...++.+.+++..++..+..++.++.+.|+++|+++||+.+.|.++..+|++...+..+...+.............++..
T Consensus 309 ~~~~~~~~l~~~~~~~~~~~a~~~s~lvE~i~gi~tvK~~~~e~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 388 (709)
T COG2274 309 ITLIFQPLLRRKTRKLIEESAEQQSFLVETIKGIETVKALAAEPRFRSQWDNRLAKQVNIGFKTEKLALILNTIKSLLQQ 388 (709)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999888888899999
Q ss_pred HHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhccCcccccccccCCCCCC
Q 001438 298 LSWSLLVWYVSVVVHKHISNGGESFTTMLNVVIAGLSLGQAAPDITAFIRAKAAAYPIFEMIERDTMSKASSKTGRKLDK 377 (1077)
Q Consensus 298 ~~~~~~~~~g~~~v~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~~~~ 377 (1077)
++.++++|+|++++.+|.+|.|.++++.........|+..+...+..+++++.+.+|+.++++.+++.+... .....++
T Consensus 389 l~~v~iL~~G~~lVl~~~lTlG~LiAf~~l~~~f~~pi~~L~~~~~~~q~~~~~~~rL~dil~~~~E~~~~~-~~~~~~~ 467 (709)
T COG2274 389 LSSVLILWFGAILVLEGELTLGQLVAFNMLAGYFISPITRLSQLWTDFQQAKVALERLGDILDTPPEQEGDK-TLIHLPK 467 (709)
T ss_pred HHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccc-ccccccc
Confidence 999999999999999999999999988766666677899999999999999999999999999877643321 1123456
Q ss_pred CcccEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHHHh
Q 001438 378 LSGHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLR 457 (1077)
Q Consensus 378 ~~~~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r 457 (1077)
..|+|+++||+|+|+.++ +++|+|+||+|++||++||||+||||||||+|+|+|+|+|++|+|.+||.|+.+++.+++|
T Consensus 468 ~~g~I~~~nvsf~y~~~~-~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~dg~dl~~i~~~~lR 546 (709)
T COG2274 468 LQGEIEFENVSFRYGPDD-PPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDIDLASLR 546 (709)
T ss_pred cCceEEEEEEEEEeCCCC-cchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEeHHhcCHHHHH
Confidence 779999999999998653 4799999999999999999999999999999999999999999999999999999999999
Q ss_pred hheeEEccCCCcccccHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHHhcc
Q 001438 458 QQIGLVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVK 537 (1077)
Q Consensus 458 ~~i~~v~Q~~~lf~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~~ 537 (1077)
++||||+||+.+|+|||+|||+++.|+.++|++.+||+++++++||+.+|.||+|.+||+|.+||||||||++||||+++
T Consensus 547 ~~ig~V~Q~~~Lf~gSI~eNi~l~~p~~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQrQrlalARaLl~ 626 (709)
T COG2274 547 RQVGYVLQDPFLFSGSIRENIALGNPEATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRLALARALLS 626 (709)
T ss_pred hheeEEcccchhhcCcHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEccCchhHhhcCEEEEEECCEEEEecChhHHhcCCCchHHHHH
Q 001438 538 NPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRNADVIAVVQGRKIVKTGSHEELISNPNSAYAALV 617 (1077)
Q Consensus 538 ~p~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~vtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~ 617 (1077)
||+||||||||||||+++|+.|.+.|.+..+|+|+|+||||++++++||||+||++|+|+++|+|+|+++. ++.|++++
T Consensus 627 ~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~~~~T~I~IaHRl~ti~~adrIiVl~~Gkiv~~gs~~ell~~-~g~y~~l~ 705 (709)
T COG2274 627 KPKILLLDEATSALDPETEAIILQNLLQILQGRTVIIIAHRLSTIRSADRIIVLDQGKIVEQGSHEELLAQ-GGLYARLY 705 (709)
T ss_pred CCCEEEEeCcccccCHhHHHHHHHHHHHHhcCCeEEEEEccchHhhhccEEEEccCCceeccCCHHHHHHh-cChHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998 99999998
Q ss_pred HHH
Q 001438 618 QLQ 620 (1077)
Q Consensus 618 ~~~ 620 (1077)
+.|
T Consensus 706 ~~q 708 (709)
T COG2274 706 QQQ 708 (709)
T ss_pred hcc
Confidence 754
|
|
| >PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-84 Score=797.09 Aligned_cols=567 Identities=21% Similarity=0.259 Sum_probs=475.0
Q ss_pred HHHHHHhhchhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 001438 43 LFKLFAFADFYDYILMSLGSIGACVHGVSVPVFFIFFGKLINIIGLAYLFPKTASHKVAKYSLDFVYLSVAILFSSWIEV 122 (1077)
Q Consensus 43 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (1077)
+++++++.+++++ .+++++++.++..++.+..++++++++|.+.... . . ......+...++++.++..++.+++.
T Consensus 10 ~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~--~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (588)
T PRK11174 10 TRWLKQQSKPAKR-WLNLSILLGFLSGLLLIAQAWLLATILQALIIEN--I-P-REALLPPFILLILLFVLRALLAWLRE 84 (588)
T ss_pred hHHHHHHhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--C-c-hhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456666655443 3455666666666677777788899999753111 0 0 11122233344445556677788888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCchhhccCCChhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001438 123 SCWMYTGERQAAKMRMAYLRSMLNQDISLFDTEASTGEVISAITSDIIVVQDALSEKVGNFMHYISRFLGGFIIGFARVW 202 (1077)
Q Consensus 123 ~~~~~~~~~~~~~lr~~~~~~ll~~~~~~f~~~~~~G~i~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (1077)
+...+.+.++..++|.++|++++++|.++|++ .++|++++|+++|++.+++.+...+..++..++.+++.++++++++|
T Consensus 85 ~~~~~~~~~~~~~lr~~~~~~ll~~~~~~~~~-~~~g~l~s~~~~dv~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 163 (588)
T PRK11174 85 RVGFKAGQHIRQQIRQQVLDKLQQLGPAWIQG-KPAGSWATLVLEQVEDMHDFYARYLPQMALAVLVPLLILIAVFPINW 163 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCchhhcc-CCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888999999999999999999999999998 48999999999999999999999999999999988888999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHH
Q 001438 203 QISLVTLSIVPLIALAGGMYAYVTIGLIARVRKSYVKAGEIAEEVIGNVRTVQAFAGEDKAVKVYKEALSNTYKYGRKAG 282 (1077)
Q Consensus 203 ~l~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~ 282 (1077)
.+++++++++|++.++...+.++.++..++.++..++..+.+.|.++|+++||+|++|+.+.++|++..++..+...+..
T Consensus 164 ~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~ 243 (588)
T PRK11174 164 AAGLILLGTAPLIPLFMALVGMGAADANRRNFLALARLSGHFLDRLRGLETLRLFNRGEAETESIRSASEDFRQRTMEVL 243 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHhcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999988888888888888888889999999999999999999999999999999999999988888877777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHH---------HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 001438 283 LAKGLGLGSMHCVLFLSWSLLVWYVSVVVHKHISNGGES---------FTTMLNVVIAGLSLGQAAPDITAFIRAKAAAY 353 (1077)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~g~~---------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ 353 (1077)
+..+...++..++..+..+++++++++.+. |.++.|.+ +.++.+......|+..+...+..+.+++++.+
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~t~G~l~~~~~~~~~~~~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ 322 (588)
T PRK11174 244 RMAFLSSAVLEFFASISIALVAVYFGFSYL-GELNFGHYGTGVTLFAGFFVLILAPEFYQPLRDLGTFYHAKAQAVGAAE 322 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cccccccccccchHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 766666555555555544444455554443 66776643 11112223345678888888889999999999
Q ss_pred HHHHHhccCcccccccccCCCCCCCcccEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcc
Q 001438 354 PIFEMIERDTMSKASSKTGRKLDKLSGHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERF 433 (1077)
Q Consensus 354 ri~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~ 433 (1077)
|+.++++.+++.+.. .....+.+..+.|+++||+|.|+++ +++|+|+||+|+|||++|||||||||||||+++|+|+
T Consensus 323 ri~~~l~~~~~~~~~-~~~~~~~~~~~~i~~~~vsf~~~~~--~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~ 399 (588)
T PRK11174 323 SLVTFLETPLAHPQQ-GEKELASNDPVTIEAEDLEILSPDG--KTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGF 399 (588)
T ss_pred HHHHHHcCCCcccCC-CccccCCCCCceEEEEeeEEeccCC--CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 999999875432111 1100111123579999999877643 4699999999999999999999999999999999999
Q ss_pred cCCCccEEEECCeeCCCCCHHHHhhheeEEccCCCcccccHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHhcCccchhhh
Q 001438 434 YEPLSGEILLDGNNIKGLDLKWLRQQIGLVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQ 513 (1077)
Q Consensus 434 ~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~ 513 (1077)
| |++|+|.+||+|+++++.+++|++|+||||+|++|++||+|||.+|.++.++++++++|+.++++++++.+|+|+||.
T Consensus 400 ~-p~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~LF~~TI~eNI~~g~~~~~~eei~~al~~a~l~~~i~~lp~G~dT~ 478 (588)
T PRK11174 400 L-PYQGSLKINGIELRELDPESWRKHLSWVGQNPQLPHGTLRDNVLLGNPDASDEQLQQALENAWVSEFLPLLPQGLDTP 478 (588)
T ss_pred C-CCCcEEEECCEecccCCHHHHHhheEEecCCCcCCCcCHHHHhhcCCCCCCHHHHHHHHHHhCHHHHHHhcccccccc
Confidence 9 999999999999999999999999999999999999999999999988899999999999999999999999999999
Q ss_pred hcCCCCCCChHHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEccCchhHhhcCEEEEEEC
Q 001438 514 VGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRNADVIAVVQG 593 (1077)
Q Consensus 514 ~~~~g~~LSgGqkqri~lARal~~~p~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~vtH~~~~~~~~d~i~~l~~ 593 (1077)
+||+|.+|||||||||+||||+++||+|||||||||+||+++++.+++.|++..+++|+|+||||+++++.||+|++|++
T Consensus 479 vge~G~~LSGGQrQRialARAll~~~~IliLDE~TSaLD~~te~~i~~~l~~~~~~~TvIiItHrl~~i~~aD~Iivl~~ 558 (588)
T PRK11174 479 IGDQAAGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAASRRQTTLMVTHQLEDLAQWDQIWVMQD 558 (588)
T ss_pred cccCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhCCCEEEEEecChHHHHhCCEEEEEeC
Confidence 99999999999999999999999999999999999999999999999999998889999999999999999999999999
Q ss_pred CEEEEecChhHHhcCCCchHHHHHHHHH
Q 001438 594 RKIVKTGSHEELISNPNSAYAALVQLQE 621 (1077)
Q Consensus 594 G~i~~~g~~~~l~~~~~~~~~~~~~~~~ 621 (1077)
|+|+|.|+|+||+++ ++.|++++..|.
T Consensus 559 G~i~e~G~~~eL~~~-~~~y~~l~~~q~ 585 (588)
T PRK11174 559 GQIVQQGDYAELSQA-GGLFATLLAHRQ 585 (588)
T ss_pred CeEeecCCHHHHHhc-chHHHHHHHHhh
Confidence 999999999999987 789999987765
|
|
| >PTZ00265 multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-84 Score=846.04 Aligned_cols=571 Identities=29% Similarity=0.448 Sum_probs=486.6
Q ss_pred hHHHHHHhhchhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 001438 42 SLFKLFAFADFYDYILMSLGSIGACVHGVSVPVFFIFFGKLINIIGLAYLFPKTASHKVAKYSLDFVYLSVAILFSSWIE 121 (1077)
Q Consensus 42 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (1077)
.+.+++++..++.+ .++++++++++.+.+.|+++++++.+++.+... .........+++++++++++..++.+++
T Consensus 812 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~----~~~~~~~~~~~l~~~~~~i~~~~~~~l~ 886 (1466)
T PTZ00265 812 NLRIVYREIFSYKK-DVTIIALSILVAGGLYPVFALLYAKYVSTLFDF----ANLEANSNKYSLYILVIAIAMFISETLK 886 (1466)
T ss_pred hHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc----hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555444332 356777788888999999999999999975321 1111223456777777788888889999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCchhhcc-CCChhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001438 122 VSCWMYTGERQAAKMRMAYLRSMLNQDISLFDT-EASTGEVISAITSDIIVVQDALSEKVGNFMHYISRFLGGFIIGFAR 200 (1077)
Q Consensus 122 ~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~f~~-~~~~G~i~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (1077)
.++..+.++++..++|.++|+++++++++|||+ +.++|++++|+++|++.+++.+...+..++..++.+++++++++++
T Consensus 887 ~~~~~~~~~~~~~~lR~~lf~~ll~~~~~~fd~~~~~~G~l~srl~~Dv~~l~~~~~~~l~~~~~~i~~~i~~~~~~~~~ 966 (1466)
T PTZ00265 887 NYYNNVIGEKVEKTMKRRLFENILYQEISFFDQDKHAPGLLSAHINRDVHLLKTGLVNNIVIFTHFIVLFLVSMVMSFYF 966 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999985 2378999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH-----------------HHHHHHHHHHHHHHHHhhHHHHHHhccHHH
Q 001438 201 VWQISLVTLSIVPLIALAGGMYAYVTIGLI-AR-----------------VRKSYVKAGEIAEEVIGNVRTVQAFAGEDK 262 (1077)
Q Consensus 201 ~~~l~l~~l~~~pl~~~~~~~~~~~~~~~~-~~-----------------~~~~~~~~~~~~~E~l~gi~~Ik~~~~e~~ 262 (1077)
+|.+++++++++|++ ...+.+..+... ++ .++..++.+..++|.++|+++||+|+.|+.
T Consensus 967 ~~~l~l~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tVka~~~e~~ 1043 (1466)
T PTZ00265 967 CPIVAAVLTGTYFIF---MRVFAIRARLTANKDVEKKEINQPGTVFAYNSDDEIFKDPSFLIQEAFYNMNTVIIYGLEDY 1043 (1466)
T ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhhhccccccccchhhhHHHHHHHHHHHHHHHhcHHHHHHhcchHH
Confidence 999887765444333 233333222111 11 123355677899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHHhHHHH
Q 001438 263 AVKVYKEALSNTYKYGRKAGLAKGLGLGSMHCVLFLSWSLLVWYVSVVVHKHISNGGESFTTMLNVVIAGLSLGQAAPDI 342 (1077)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~ 342 (1077)
+.++|.+..++..+...+...+.++..++..++..++.++++|+|++++..|.+++|.+++++.+++....++..+...+
T Consensus 1044 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~lv~~g~it~g~l~~~~~~~~~~~~~~~~l~~~~ 1123 (1466)
T PTZ00265 1044 FCNLIEKAIDYSNKGQKRKTLVNSMLWGFSQSAQLFINSFAYWFGSFLIRRGTILVDDFMKSLFTFLFTGSYAGKLMSLK 1123 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999988888888888888888888888888999999999999999999998887666555445667777888
Q ss_pred HHHHHHHHHHHHHHHHhccCcccccccccCCC---CCCCcccEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCC
Q 001438 343 TAFIRAKAAAYPIFEMIERDTMSKASSKTGRK---LDKLSGHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGS 419 (1077)
Q Consensus 343 ~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~---~~~~~~~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~ 419 (1077)
+.+.+++++++|++++++.+++.+..+..+.. +++..+.|+|+||+|+||++++.++|+|+||+|++|+++||||||
T Consensus 1124 ~~~~~a~~a~~ri~~ll~~~~~~~~~~~~~~~~~~~~~~~g~I~f~nVsF~Y~~~~~~~vL~~lsl~i~~G~~vAIVG~S 1203 (1466)
T PTZ00265 1124 GDSENAKLSFEKYYPLIIRKSNIDVRDNGGIRIKNKNDIKGKIEIMDVNFRYISRPNVPIYKDLTFSCDSKKTTAIVGET 1203 (1466)
T ss_pred HHHHHHHHHHHHHHHHHCCCCcCCCCCCcccccccCCCCCceEEEEEEEEECCCCCCCccccCeeEEEcCCCEEEEECCC
Confidence 99999999999999999876543211111111 123457899999999998765567999999999999999999999
Q ss_pred CCcHHHHHHHHhcccCC------------------------------------------------------CccEEEECC
Q 001438 420 GSGKSTVISLIERFYEP------------------------------------------------------LSGEILLDG 445 (1077)
Q Consensus 420 GsGKSTl~~~l~g~~~~------------------------------------------------------~~G~i~~~g 445 (1077)
|||||||+++|+|+|+| ++|+|++||
T Consensus 1204 GsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG 1283 (1466)
T PTZ00265 1204 GSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQDYQGDEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDG 1283 (1466)
T ss_pred CCCHHHHHHHHHHhCCCccccccccccccccccccccccccccccccccccccccccccccccccccccCCCCCeEEECC
Confidence 99999999999999999 699999999
Q ss_pred eeCCCCCHHHHhhheeEEccCCCcccccHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHH
Q 001438 446 NNIKGLDLKWLRQQIGLVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQ 525 (1077)
Q Consensus 446 ~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq 525 (1077)
+|+++++.+++|++||||||||.||++||||||.+|.++++++++++||+.+++++||..||+||||.|||+|.+|||||
T Consensus 1284 ~di~~~~~~~lR~~i~~V~Qep~LF~gTIreNI~~g~~~at~eeI~~A~k~A~l~~fI~~LP~GydT~VGe~G~~LSGGQ 1363 (1466)
T PTZ00265 1284 VDICDYNLKDLRNLFSIVSQEPMLFNMSIYENIKFGKEDATREDVKRACKFAAIDEFIESLPNKYDTNVGPYGKSLSGGQ 1363 (1466)
T ss_pred EEHHhCCHHHHHhhccEeCCCCccccccHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCccccCCccCCCCCcCCHHH
Confidence 99999999999999999999999999999999999998899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh--CCCeEEEEccCchhHhhcCEEEEEEC----CEEE-E
Q 001438 526 KQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVM--VGRTTVVVAHRLSTIRNADVIAVVQG----RKIV-K 598 (1077)
Q Consensus 526 kqri~lARal~~~p~illlDEpts~lD~~~~~~i~~~l~~~~--~~~t~i~vtH~~~~~~~~d~i~~l~~----G~i~-~ 598 (1077)
||||||||||+++|+|||||||||+||+++++.|++.|.+.. +++|+|+||||+++++.||+|+||++ |+++ |
T Consensus 1364 kQRIaIARALlr~p~ILLLDEaTSaLD~~sE~~I~~~L~~~~~~~~~TvIiIaHRlsti~~aD~Ivvl~~~~~~G~iv~e 1443 (1466)
T PTZ00265 1364 KQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTIVDIKDKADKTIITIAHRIASIKRSDKIVVFNNPDRTGSFVQA 1443 (1466)
T ss_pred HHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHhccCCCEEEEEechHHHHHhCCEEEEEeCCCCCCCEEEE
Confidence 999999999999999999999999999999999999999884 69999999999999999999999999 9954 8
Q ss_pred ecChhHHhcCCCchHHHHHHHH
Q 001438 599 TGSHEELISNPNSAYAALVQLQ 620 (1077)
Q Consensus 599 ~g~~~~l~~~~~~~~~~~~~~~ 620 (1077)
+|+|+||+++.++.|+++++.+
T Consensus 1444 ~Gth~eLl~~~~g~Y~~l~~~~ 1465 (1466)
T PTZ00265 1444 HGTHEELLSVQDGVYKKYVKLA 1465 (1466)
T ss_pred ecCHHHHHhcCCChHHHHHhhc
Confidence 9999999974489999998754
|
|
| >TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-83 Score=795.56 Aligned_cols=565 Identities=34% Similarity=0.505 Sum_probs=490.4
Q ss_pred hhhHHHHHHhhchhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcccCCchhhhhHHHHHHHHHHHHHHHHHHHHH
Q 001438 40 SVSLFKLFAFADFYDYILMSLGSIGACVHGVSVPVFFIFFGKLINIIGLAYLFPKTASHKVAKYSLDFVYLSVAILFSSW 119 (1077)
Q Consensus 40 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (1077)
.+.+++++++.++. +..+...+++.++..+.....++++++++|.+.... + ..........++++.++..++.+
T Consensus 146 ~~~~~~l~~~~~~~-~~~l~~~~~~~~~~~l~~~~~p~~~~~iid~~~~~~-~----~~~~~~~~~~~~~~~~~~~~~~~ 219 (711)
T TIGR00958 146 ADLLFRLLGLSGRD-WPWLISAFVFLTLSSLGEMFIPFYTGRVIDTLGGDK-G----PPALASAIFFMCLLSIASSVSAG 219 (711)
T ss_pred hhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-C----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566777766543 344455555556666666666778899999764211 1 11122223334445556667788
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhccCCChhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001438 120 IEVSCWMYTGERQAAKMRMAYLRSMLNQDISLFDTEASTGEVISAITSDIIVVQDALSEKVGNFMHYISRFLGGFIIGFA 199 (1077)
Q Consensus 120 ~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~f~~~~~~G~i~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (1077)
++.+++.+.+.++..++|.++|++++++|.++|++ .++|++++|+++|++.+++.+...+..++..+..+++.+++++.
T Consensus 220 l~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~f~~-~~~G~i~srl~~Di~~i~~~~~~~~~~~l~~~~~~i~~~~~l~~ 298 (711)
T TIGR00958 220 LRGGSFNYTMARINLRIREDLFRSLLRQDLGFFDE-NKTGELTSRLSSDTQTMSRSLSLNVNVLLRNLVMLLGLLGFMLW 298 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHcC-CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888889999999999999999999999999998 48999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHH
Q 001438 200 RVWQISLVTLSIVPLIALAGGMYAYVTIGLIARVRKSYVKAGEIAEEVIGNVRTVQAFAGEDKAVKVYKEALSNTYKYGR 279 (1077)
Q Consensus 200 ~~~~l~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~ 279 (1077)
++|.+++++++.+|+..++..++.++.++..++.++..++..+.+.|.++|+++||+|++|+.+.++|++..++..+...
T Consensus 299 ~s~~l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~ 378 (711)
T TIGR00958 299 LSPRLTMVTLINLPLVFLAEKVFGKRYQLLSEELQEAVAKANQVAEEALSGMRTVRSFAAEEGEASRFKEALEETLQLNK 378 (711)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhcccHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998888889999988888999999999999999999999999999999999999999999888877
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHh
Q 001438 280 KAGLAKGLGLGSMHCVLFLSWSLLVWYVSVVVHKHISNGGESFTTMLNVVIAGLSLGQAAPDITAFIRAKAAAYPIFEMI 359 (1077)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l 359 (1077)
+.....+.......++..+..++++++|++++..|.++.|.+++++.+......++..+...+..+++++.+.+|+.+++
T Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~~il~~g~~lv~~g~it~G~lva~~~~~~~l~~~l~~l~~~~~~~~~~~~a~~ri~~~l 458 (711)
T TIGR00958 379 RKALAYAGYLWTTSVLGMLIQVLVLYYGGQLVLTGKVSSGNLVSFLLYQEQLGEAVRVLSYVYSGMMQAVGASEKVFEYL 458 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 77776666655555666666777888999999999999999998888888888899999999999999999999999999
Q ss_pred ccCcccccccccCCCCCCCcccEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCcc
Q 001438 360 ERDTMSKASSKTGRKLDKLSGHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSG 439 (1077)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G 439 (1077)
+.+++.+... ...+.+..+.|+++||+|+||+++++++|+|+||+|+|||+++||||||||||||+++|+|+|+|++|
T Consensus 459 ~~~~~~~~~~--~~~~~~~~~~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G 536 (711)
T TIGR00958 459 DRKPNIPLTG--TLAPLNLEGLIEFQDVSFSYPNRPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGG 536 (711)
T ss_pred CCCCCCCCCC--CCCCCCCCCeEEEEEEEEECCCCCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCCCCC
Confidence 8765432211 11122345689999999999876556799999999999999999999999999999999999999999
Q ss_pred EEEECCeeCCCCCHHHHhhheeEEccCCCcccccHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCC
Q 001438 440 EILLDGNNIKGLDLKWLRQQIGLVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGI 519 (1077)
Q Consensus 440 ~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~ 519 (1077)
+|.+||+|+++++.+++|++|+||||||++|++||||||.+|.++.+++++.++++.++++++++++|+|+||.+||+|.
T Consensus 537 ~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lF~gTIreNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~ 616 (711)
T TIGR00958 537 QVLLDGVPLVQYDHHYLHRQVALVGQEPVLFSGSVRENIAYGLTDTPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGS 616 (711)
T ss_pred EEEECCEEHHhcCHHHHHhhceEEecCccccccCHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCCCccCCcccCCCC
Confidence 99999999999999999999999999999999999999999988888999999999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEccCchhHhhcCEEEEEECCEEEEe
Q 001438 520 QLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRNADVIAVVQGRKIVKT 599 (1077)
Q Consensus 520 ~LSgGqkqri~lARal~~~p~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~vtH~~~~~~~~d~i~~l~~G~i~~~ 599 (1077)
+|||||||||+||||++++|+|+|||||||+||+++++.+++ ....+++|+|+||||+++++.||+|++|++|+|+|+
T Consensus 617 ~LSGGQkQRlalARALl~~p~ILILDEpTSaLD~~te~~i~~--~~~~~~~TvIiItHrl~~i~~aD~IivL~~G~ive~ 694 (711)
T TIGR00958 617 QLSGGQKQRIAIARALVRKPRVLILDEATSALDAECEQLLQE--SRSRASRTVLLIAHRLSTVERADQILVLKKGSVVEM 694 (711)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEEccccccCHHHHHHHHH--hhccCCCeEEEEeccHHHHHhCCEEEEEECCEEEEe
Confidence 999999999999999999999999999999999999999988 333478999999999999999999999999999999
Q ss_pred cChhHHhcCCCchHHHH
Q 001438 600 GSHEELISNPNSAYAAL 616 (1077)
Q Consensus 600 g~~~~l~~~~~~~~~~~ 616 (1077)
|+|+||+++ ++.|+++
T Consensus 695 Gt~~eL~~~-~~~y~~l 710 (711)
T TIGR00958 695 GTHKQLMED-QGCYKHL 710 (711)
T ss_pred eCHHHHHhC-CCchHhc
Confidence 999999987 7788765
|
|
| >COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-82 Score=774.08 Aligned_cols=551 Identities=35% Similarity=0.529 Sum_probs=488.2
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001438 57 LMSLGSIGACVHGVSVPVFFIFFGKLINIIGLAYLFPKTASHKVAKYSLDFVYLSVAILFSSWIEVSCWMYTGERQAAKM 136 (1077)
Q Consensus 57 ~~~~~~~~~~~~~~~~p~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 136 (1077)
.+.++.++..+..+.....+.+++.++|.+.. .......+...++++.++..++.++..+...+.+.+...++
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-------~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~l 87 (567)
T COG1132 15 LLLLAILLLLLSALLSLLLPLLIGRIIDALLA-------DLGELLELLLLLLLLALLGGVLRALQSYLGSRLGQKIVADL 87 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444445555555556677888887641 11222333444445555666777777777778889999999
Q ss_pred HHHHHHHHHhCCchhhccCCChhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001438 137 RMAYLRSMLNQDISLFDTEASTGEVISAITSDIIVVQDALSEKVGNFMHYISRFLGGFIIGFARVWQISLVTLSIVPLIA 216 (1077)
Q Consensus 137 r~~~~~~ll~~~~~~f~~~~~~G~i~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~l~~~pl~~ 216 (1077)
|.++++++++.|+.+|++. ++|++++|+++|++.++..+......+...+..+++.+++++..+|.++++.++..|++.
T Consensus 88 r~~~~~~l~~~~~~~~~~~-~~g~l~~~~t~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~ 166 (567)
T COG1132 88 RRDLFEKLLRLPLSFFDKA-KSGDLISRLTNDVEAVSNLVSTVLVLVFTSILLLIGSLVLLFSLSWRLALILLLILPLLA 166 (567)
T ss_pred HHHHHHHHHhCCHHHhCcC-CcchHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 9999999999999999994 899999999999999999998886666667888888999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001438 217 LAGGMYAYVTIGLIARVRKSYVKAGEIAEEVIGNVRTVQAFAGEDKAVKVYKEALSNTYKYGRKAGLAKGLGLGSMHCVL 296 (1077)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (1077)
+...++.++.++..++.++..++..+.+.|.++|+++||+|+.|+...+++.+..++..+...+.....+...+....+.
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (567)
T COG1132 167 LVLSLLARKSRKLSRRVREALGELNARLLESLSGIRVIKAFGAEDRELKRFEEANEELRRANLRASRLEALLAPLMLLLS 246 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99888888778888999999999999999999999999999999999999999999988888888888888888888888
Q ss_pred HHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhccCcccccccccCCCCC
Q 001438 297 FLSWSLLVWYVSVVVHKHISNGGESFTTMLNVVIAGLSLGQAAPDITAFIRAKAAAYPIFEMIERDTMSKASSKTGRKLD 376 (1077)
Q Consensus 297 ~~~~~~~~~~g~~~v~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~~~ 376 (1077)
.+...+++++|.+.+..+.+++|.+.+++.+......|+..+...+..+.++..+++|++++++.++...+.... ..
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~---~~ 323 (567)
T COG1132 247 SLGTVLVLALGGFLVLSGSLTVGALAAFILYLLRLLTPILQLGEVVSLLQRASAAAERLFELLDEEPEVEDPPDP---LK 323 (567)
T ss_pred HHHHHHHHHHHHHHHHcCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCCCCC---CC
Confidence 888899999999999999999999888877777778889998889999999999999999999986543321111 22
Q ss_pred CCcccEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHHH
Q 001438 377 KLSGHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWL 456 (1077)
Q Consensus 377 ~~~~~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~ 456 (1077)
...+.|+|+||+|+|++ ++++|+|+||++++||++|||||||||||||+++|+|+|+|++|+|.+||+|+++++.+++
T Consensus 324 ~~~~~I~f~~vsf~y~~--~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~idg~dI~~i~~~~l 401 (567)
T COG1132 324 DTIGSIEFENVSFSYPG--KKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDSL 401 (567)
T ss_pred CCCCeEEEEEEEEEcCC--CCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCEehhhcCHHHH
Confidence 34577999999999984 3469999999999999999999999999999999999999999999999999999999999
Q ss_pred hhheeEEccCCCcccccHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHHhc
Q 001438 457 RQQIGLVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIV 536 (1077)
Q Consensus 457 r~~i~~v~Q~~~lf~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~ 536 (1077)
|++|+||||||+||++||+|||.+|+++++++++++||+.++++++++++|+|+||.+||+|.+||||||||++||||++
T Consensus 402 r~~I~~V~Qd~~LF~~TI~~NI~~g~~~at~eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSgGQrQrlaiARall 481 (567)
T COG1132 402 RKRIGIVSQDPLLFSGTIRENIALGRPDATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLAIARALL 481 (567)
T ss_pred HHhccEEcccceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCcccccceecCCCccCCHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEccCchhHhhcCEEEEEECCEEEEecChhHHhcCCCchHHHH
Q 001438 537 KNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRNADVIAVVQGRKIVKTGSHEELISNPNSAYAAL 616 (1077)
Q Consensus 537 ~~p~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~vtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~ 616 (1077)
+||+|||||||||+||+++|+.+++.+.++.++||+|+|+||++++++||+|+||++|+|+|.|+|+||+++ ++.|+++
T Consensus 482 ~~~~ILILDEaTSalD~~tE~~I~~~l~~l~~~rT~iiIaHRlsti~~aD~IiVl~~G~i~e~G~h~eLl~~-~g~y~~l 560 (567)
T COG1132 482 RNPPILILDEATSALDTETEALIQDALKKLLKGRTTLIIAHRLSTIKNADRIIVLDNGRIVERGTHEELLAK-GGLYARL 560 (567)
T ss_pred cCCCEEEEeccccccCHHhHHHHHHHHHHHhcCCEEEEEeccHhHHHhCCEEEEEECCEEEEecCHHHHHHc-CCHHHHH
Confidence 999999999999999999999999999988889999999999999999999999999999999999999998 9999999
Q ss_pred HHHHH
Q 001438 617 VQLQE 621 (1077)
Q Consensus 617 ~~~~~ 621 (1077)
++.|.
T Consensus 561 ~~~~~ 565 (567)
T COG1132 561 YQAQG 565 (567)
T ss_pred HHHhh
Confidence 98764
|
|
| >TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-81 Score=779.76 Aligned_cols=543 Identities=26% Similarity=0.313 Sum_probs=476.8
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHhcccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001438 63 IGACVHGVSVPVFFIFFGKLINIIGLAYLFPKTASHKVAKYSLDFVYLSVAILFSSWIEVSCWMYTGERQAAKMRMAYLR 142 (1077)
Q Consensus 63 ~~~~~~~~~~p~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~ 142 (1077)
+++++..+.....+++++.++|.+.+.. ...........++++.++..++.+++.+...+.+.++..++|..+|+
T Consensus 143 ~~~~~~~~~~l~~p~~~~~iid~v~~~~-----~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 217 (686)
T TIGR03797 143 AMGLLGTLLGMLVPIATGILIGTAIPDA-----DRSLLVQIALALLAAAVGAAAFQLAQSLAVLRLETRMDASLQAAVWD 217 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcC-----ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333444444457788898764321 11223333444555556667888888888889999999999999999
Q ss_pred HHHhCCchhhccCCChhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001438 143 SMLNQDISLFDTEASTGEVISAITSDIIVVQDALSEKVGNFMHYISRFLGGFIIGFARVWQISLVTLSIVPLIALAGGMY 222 (1077)
Q Consensus 143 ~ll~~~~~~f~~~~~~G~i~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~l~~~pl~~~~~~~~ 222 (1077)
++++.|+++|++ .++|++++|++ |++.+++.+...+...+..+...++.++++++++|.+++++++++|+.+++..++
T Consensus 218 ~ll~~~~~~~~~-~~~g~~~~r~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~~~~~~~~~~~~~ 295 (686)
T TIGR03797 218 RLLRLPVSFFRQ-YSTGDLASRAM-GISQIRRILSGSTLTTLLSGIFALLNLGLMFYYSWKLALVAVALALVAIAVTLVL 295 (686)
T ss_pred HHHcCCHHHHCC-CChhHHHHHHh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999998 59999999997 8999999998888888888877788888899999999999999999888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001438 223 AYVTIGLIARVRKSYVKAGEIAEEVIGNVRTVQAFAGEDKAVKVYKEALSNTYKYGRKAGLAKGLGLGSMHCVLFLSWSL 302 (1077)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (1077)
.+..++..++.++..++..+.+.|.++|+++||+++.|+.+.++|++..++..+...+.....++...+..++..+..++
T Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 375 (686)
T TIGR03797 296 GLLQVRKERRLLELSGKISGLTVQLINGISKLRVAGAENRAFARWAKLFSRQRKLELSAQRIENLLTVFNAVLPVLTSAA 375 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888999999999999999999999999999999999999999988888888887777777777788888
Q ss_pred HHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhccCcccccccccCCCCCCCcccE
Q 001438 303 LVWYVSVVVHKHISNGGESFTTMLNVVIAGLSLGQAAPDITAFIRAKAAAYPIFEMIERDTMSKASSKTGRKLDKLSGHI 382 (1077)
Q Consensus 303 ~~~~g~~~v~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~~~~~~~~i 382 (1077)
++++|++++.+|.+|+|.++++..+......|+..+...+..+++++++.+|+.++++.+++.+... ..+.+..+.|
T Consensus 376 il~~g~~lv~~g~ltiG~lva~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~~~---~~~~~~~~~I 452 (686)
T TIGR03797 376 LFAAAISLLGGAGLSLGSFLAFNTAFGSFSGAVTQLSNTLISILAVIPLWERAKPILEALPEVDEAK---TDPGKLSGAI 452 (686)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCc---CCCCCCCceE
Confidence 9999999999999999999888777777778899999999999999999999999998655422111 1112234689
Q ss_pred EEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHHHhhheeE
Q 001438 383 EFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIGL 462 (1077)
Q Consensus 383 ~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~ 462 (1077)
+++||+|+|++. ++++|+|+||+|++||++|||||||||||||+++|+|+|+|++|+|.+||+|+++++.+++|++|||
T Consensus 453 ~~~nvsf~Y~~~-~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~ 531 (686)
T TIGR03797 453 EVDRVTFRYRPD-GPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLAGLDVQAVRRQLGV 531 (686)
T ss_pred EEEEEEEEcCCC-CccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcCcCCHHHHHhccEE
Confidence 999999999743 3579999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EccCCCcccccHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHHhccCCCEE
Q 001438 463 VNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSIL 542 (1077)
Q Consensus 463 v~Q~~~lf~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~~~p~il 542 (1077)
|||||++|++||+|||.++.+ .++++++++++.++++++++.+|+|+||.+||+|.+|||||||||+||||++++|+||
T Consensus 532 v~Q~~~lf~gTI~eNi~~~~~-~~~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGGQrQRialARAll~~p~iL 610 (686)
T TIGR03797 532 VLQNGRLMSGSIFENIAGGAP-LTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIARALVRKPRIL 610 (686)
T ss_pred EccCCccCcccHHHHHhcCCC-CCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEE
Confidence 999999999999999999988 8999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEccCchhHhhcCEEEEEECCEEEEecChhHHhcCCCchHHHHHHHH
Q 001438 543 LLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRNADVIAVVQGRKIVKTGSHEELISNPNSAYAALVQLQ 620 (1077)
Q Consensus 543 llDEpts~lD~~~~~~i~~~l~~~~~~~t~i~vtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~ 620 (1077)
|||||||+||+++++++.+.|++. ++|+|+||||+++++.||+|++|++|+|+|.|+|+|++++ ++.|+++++.|
T Consensus 611 iLDEpTS~LD~~te~~i~~~L~~~--~~T~IiItHr~~~i~~~D~Iivl~~G~iv~~G~~~~Ll~~-~~~y~~l~~~q 685 (686)
T TIGR03797 611 LFDEATSALDNRTQAIVSESLERL--KVTRIVIAHRLSTIRNADRIYVLDAGRVVQQGTYDELMAR-EGLFAQLARRQ 685 (686)
T ss_pred EEeCCccCCCHHHHHHHHHHHHHh--CCeEEEEecChHHHHcCCEEEEEECCEEEEECCHHHHHhC-CcHHHHHHHhc
Confidence 999999999999999999999886 6899999999999999999999999999999999999986 89999988643
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif |
| >TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-81 Score=785.05 Aligned_cols=541 Identities=24% Similarity=0.332 Sum_probs=475.7
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHhcccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001438 63 IGACVHGVSVPVFFIFFGKLINIIGLAYLFPKTASHKVAKYSLDFVYLSVAILFSSWIEVSCWMYTGERQAAKMRMAYLR 142 (1077)
Q Consensus 63 ~~~~~~~~~~p~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~ 142 (1077)
++..+.+++.| ++++.++|.+.... ...........++++.++..++.+++.+.....+.++..++|.++|+
T Consensus 164 ~~~~~~~l~~p---~~~~~iid~v~~~~-----~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 235 (710)
T TIGR03796 164 LLLVLPGLVIP---AFSQIFVDEILVQG-----RQDWLRPLLLGMGLTALLQGVLTWLQLYYLRRLQIKLAVGMSARFLW 235 (710)
T ss_pred HHHHHHHHHHH---HHHHHHHHHHhhcC-----ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444 56788888764321 11112223344444556667788888888889999999999999999
Q ss_pred HHHhCCchhhccCCChhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001438 143 SMLNQDISLFDTEASTGEVISAITSDIIVVQDALSEKVGNFMHYISRFLGGFIIGFARVWQISLVTLSIVPLIALAGGMY 222 (1077)
Q Consensus 143 ~ll~~~~~~f~~~~~~G~i~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~l~~~pl~~~~~~~~ 222 (1077)
++++.|+++|++ .++|++++|+++| +.+++++...+...+..+..+++.++++++++|.+++++++.+|+.+++..++
T Consensus 236 ~ll~l~~~~~~~-~~~g~~~~r~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~~~~~~~~~~~~~ 313 (710)
T TIGR03796 236 HILRLPVRFFAQ-RHAGDIASRVQLN-DQVAEFLSGQLATTALDAVMLVFYALLMLLYDPVLTLIGIAFAAINVLALQLV 313 (710)
T ss_pred HHHcCCHHHHcC-CcccHHHHHhhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999998 5999999999988 78999999889999999999999999999999999999999999998888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001438 223 AYVTIGLIARVRKSYVKAGEIAEEVIGNVRTVQAFAGEDKAVKVYKEALSNTYKYGRKAGLAKGLGLGSMHCVLFLSWSL 302 (1077)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (1077)
.+...+..++.++..++..+.+.|.++|+++||++++|+.+.++|.+...+..+...+.....++...+..++..+..++
T Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 393 (710)
T TIGR03796 314 SRRRVDANRRLQQDAGKLTGVAISGLQSIETLKASGLESDFFSRWAGYQAKLLNAQQELGVLTQILGVLPTLLTSLNSAL 393 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888899999999999999999999999999999999999998888888888887777777777788888
Q ss_pred HHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhccCcccccccc---c-CCCC-CC
Q 001438 303 LVWYVSVVVHKHISNGGESFTTMLNVVIAGLSLGQAAPDITAFIRAKAAAYPIFEMIERDTMSKASSK---T-GRKL-DK 377 (1077)
Q Consensus 303 ~~~~g~~~v~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~---~-~~~~-~~ 377 (1077)
++++|++++..|.+|+|.++++..+......|+..+...+..+++++.+.+|+.++++.+++.+.... . .... ++
T Consensus 394 il~~g~~~v~~g~lt~G~lva~~~l~~~~~~p~~~l~~~~~~~~~~~~~~~ri~~il~~~~e~~~~~~~~~~~~~~~~~~ 473 (710)
T TIGR03796 394 ILVVGGLRVMEGQLTIGMLVAFQSLMSSFLEPVNNLVGFGGTLQELEGDLNRLDDVLRNPVDPLLEEEEAPAAGSEPSPR 473 (710)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccccccccccccccCCC
Confidence 99999999999999999999887777777789999999999999999999999999987654322110 0 0111 23
Q ss_pred CcccEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHHHh
Q 001438 378 LSGHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLR 457 (1077)
Q Consensus 378 ~~~~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r 457 (1077)
..+.|+++||+|+|++. ++++|+|+||+|++||++|||||||||||||+++|+|+|+|++|+|.+||+|+++++.+++|
T Consensus 474 ~~~~I~~~~vsf~y~~~-~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr 552 (710)
T TIGR03796 474 LSGYVELRNITFGYSPL-EPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEILFDGIPREEIPREVLA 552 (710)
T ss_pred CCCeEEEEEEEEecCCC-CCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEeHHHCCHHHHH
Confidence 35689999999999854 35699999999999999999999999999999999999999999999999999999999999
Q ss_pred hheeEEccCCCcccccHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHHhcc
Q 001438 458 QQIGLVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVK 537 (1077)
Q Consensus 458 ~~i~~v~Q~~~lf~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~~ 537 (1077)
++|+||||+|++|++||+|||.++.++.++++++++++.+++++++..+|+|+||.+||+|.+|||||||||+||||+++
T Consensus 553 ~~i~~v~Q~~~lf~gTi~eNi~l~~~~~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~~LSGGQrQRiaLARall~ 632 (710)
T TIGR03796 553 NSVAMVDQDIFLFEGTVRDNLTLWDPTIPDADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQRQRLEIARALVR 632 (710)
T ss_pred hheeEEecCChhhhccHHHHhhCCCCCCCHHHHHHHHHHhCCHHHHHhCcCcccceeccCCCCCCHHHHHHHHHHHHHhh
Confidence 99999999999999999999999988889999999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEccCchhHhhcCEEEEEECCEEEEecChhHHhcCCCchHHHHH
Q 001438 538 NPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRNADVIAVVQGRKIVKTGSHEELISNPNSAYAALV 617 (1077)
Q Consensus 538 ~p~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~vtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~ 617 (1077)
+|+|||||||||+||+++++.+.+.|++ .++|+|+||||+++++.||+|++|++|+|++.|+|+||+++ ++.|++++
T Consensus 633 ~p~iliLDEptS~LD~~te~~i~~~l~~--~~~T~IiitHrl~~i~~~D~Iivl~~G~i~~~G~~~~Ll~~-~~~y~~l~ 709 (710)
T TIGR03796 633 NPSILILDEATSALDPETEKIIDDNLRR--RGCTCIIVAHRLSTIRDCDEIIVLERGKVVQRGTHEELWAV-GGAYARLI 709 (710)
T ss_pred CCCEEEEECccccCCHHHHHHHHHHHHh--cCCEEEEEecCHHHHHhCCEEEEEeCCEEEEecCHHHHHHc-CCcHHHHh
Confidence 9999999999999999999999999986 58999999999999999999999999999999999999986 78888875
|
This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin. |
| >TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-81 Score=783.35 Aligned_cols=565 Identities=25% Similarity=0.332 Sum_probs=484.5
Q ss_pred hhHHHHHHhhchhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcccCCchhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 001438 41 VSLFKLFAFADFYDYILMSLGSIGACVHGVSVPVFFIFFGKLINIIGLAYLFPKTASHKVAKYSLDFVYLSVAILFSSWI 120 (1077)
Q Consensus 41 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (1077)
..+.+++.+.++.++. +...++++++..++....+++++.++|.+.+.. ...........++++.++..++.++
T Consensus 142 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~p~~~~~iiD~v~~~~-----~~~~l~~~~~~~~~~~~~~~~~~~~ 215 (708)
T TIGR01193 142 NSLLKFIPLITRQKKL-IVNIVIAAIIVTLISIAGSYYLQKIIDTYIPHK-----MMGTLGIISIGLIIAYIIQQILSYI 215 (708)
T ss_pred chHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC-----ChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555443332 233333333334444444567888999764321 1122223333344445556678888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhccCCChhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001438 121 EVSCWMYTGERQAAKMRMAYLRSMLNQDISLFDTEASTGEVISAITSDIIVVQDALSEKVGNFMHYISRFLGGFIIGFAR 200 (1077)
Q Consensus 121 ~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~f~~~~~~G~i~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (1077)
+.++..+.+.++..++|.++|++++++|+.+|++ .++|++++|++ |++.+++.+...+...+..+..+++.+++++++
T Consensus 216 ~~~~~~~~~~~~~~~l~~~~~~~ll~l~~~~f~~-~~~G~~~~r~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 293 (708)
T TIGR01193 216 QIFLLNVLGQRLSIDIILSYIKHLFELPMSFFST-RRTGEIVSRFT-DASSIIDALASTILSLFLDMWILVIVGLFLVRQ 293 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCC-CchhHHHHHhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888889999999999999999999999999998 59999999997 999999999888888888888888888889999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHH
Q 001438 201 VWQISLVTLSIVPLIALAGGMYAYVTIGLIARVRKSYVKAGEIAEEVIGNVRTVQAFAGEDKAVKVYKEALSNTYKYGRK 280 (1077)
Q Consensus 201 ~~~l~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~ 280 (1077)
+|.+++++++.+|+++++..++.+..++..++.++..++..+.+.|.++|+++||+||+|+.+.+++++...+..+...+
T Consensus 294 ~~~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~ 373 (708)
T TIGR01193 294 NMLLFLLSLLSIPVYAVIIILFKRTFNKLNHDAMQANAVLNSSIIEDLNGIETIKSLTSEAERYSKIDSEFGDYLNKSFK 373 (708)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999988888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhc
Q 001438 281 AGLAKGLGLGSMHCVLFLSWSLLVWYVSVVVHKHISNGGESFTTMLNVVIAGLSLGQAAPDITAFIRAKAAAYPIFEMIE 360 (1077)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~ 360 (1077)
.....+....+..++..+..++++++|++++..|.+|+|.++++..+......|+..+...+..+++++++.+|+.++++
T Consensus 374 ~~~~~~~~~~~~~~~~~~~~i~il~~g~~lv~~g~ls~G~lva~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~ 453 (708)
T TIGR01193 374 YQKADQGQQAIKAVTKLILNVVILWTGAYLVMRGKLTLGQLITFNALLSYFLTPLENIINLQPKLQAARVANNRLNEVYL 453 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 87777776666666666777888999999999999999999988777777778999999999999999999999999998
Q ss_pred cCcccccccccCCCCCCCcccEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccE
Q 001438 361 RDTMSKASSKTGRKLDKLSGHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGE 440 (1077)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~ 440 (1077)
.+++.+... .....++..+.|+++||+|+|+++ +++|+|+||+|++||++||+||||||||||+++|+|+|+|++|+
T Consensus 454 ~~~e~~~~~-~~~~~~~~~~~I~~~~vsf~y~~~--~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~~G~ 530 (708)
T TIGR01193 454 VDSEFINKK-KRTELNNLNGDIVINDVSYSYGYG--SNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGE 530 (708)
T ss_pred CCCcccccc-cccCCCCCCCcEEEEEEEEEcCCC--CcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCCcE
Confidence 765432211 101123345689999999999743 46999999999999999999999999999999999999999999
Q ss_pred EEECCeeCCCCCHHHHhhheeEEccCCCcccccHHHHHhcC-CCCCCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCC
Q 001438 441 ILLDGNNIKGLDLKWLRQQIGLVNQEPALFATTIRENILYG-KDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGI 519 (1077)
Q Consensus 441 i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~~ni~~~-~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~ 519 (1077)
|++||+|+++++.+++|++||||||+|++|++||+|||.++ .++.+++++.++++.+++++++..+|+|+||.+||+|.
T Consensus 531 I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTI~eNi~l~~~~~~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~ 610 (708)
T TIGR01193 531 ILLNGFSLKDIDRHTLRQFINYLPQEPYIFSGSILENLLLGAKENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGS 610 (708)
T ss_pred EEECCEEHHHcCHHHHHHheEEEecCceehhHHHHHHHhccCCCCCCHHHHHHHHHHhCCHHHHHhcccccCcEecCCCC
Confidence 99999999999999999999999999999999999999998 46788999999999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEccCchhHhhcCEEEEEECCEEEEe
Q 001438 520 QLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRNADVIAVVQGRKIVKT 599 (1077)
Q Consensus 520 ~LSgGqkqri~lARal~~~p~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~vtH~~~~~~~~d~i~~l~~G~i~~~ 599 (1077)
+|||||||||+||||++++|+|||||||||+||+++++.+.+.|++. +++|+|+||||+++++.||+|++|++|++++.
T Consensus 611 ~LSgGQrQRialARall~~p~iliLDE~Ts~LD~~te~~i~~~L~~~-~~~T~IiitHr~~~~~~~D~i~~l~~G~i~~~ 689 (708)
T TIGR01193 611 SISGGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNLLNL-QDKTIIFVAHRLSVAKQSDKIIVLDHGKIIEQ 689 (708)
T ss_pred CCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHh-cCCEEEEEecchHHHHcCCEEEEEECCEEEEE
Confidence 99999999999999999999999999999999999999999999875 68999999999999999999999999999999
Q ss_pred cChhHHhcCCCchHHHHHH
Q 001438 600 GSHEELISNPNSAYAALVQ 618 (1077)
Q Consensus 600 g~~~~l~~~~~~~~~~~~~ 618 (1077)
|+|+|++++ ++.|+++++
T Consensus 690 G~~~~L~~~-~~~y~~l~~ 707 (708)
T TIGR01193 690 GSHDELLDR-NGFYASLIH 707 (708)
T ss_pred CCHHHHHhc-CCcHHHHhh
Confidence 999999987 788988763
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc. |
| >PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-80 Score=751.95 Aligned_cols=565 Identities=22% Similarity=0.276 Sum_probs=474.2
Q ss_pred HHHHhhchhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001438 45 KLFAFADFYDYILMSLGSIGACVHGVSVPVFFIFFGKLINIIGLAYLFPKTASHKVAKYSLDFVYLSVAILFSSWIEVSC 124 (1077)
Q Consensus 45 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (1077)
+++++.+++++ .+.+++++.++..+.....+.++++++|...... ...............+++++++..++.++..++
T Consensus 6 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~id~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (574)
T PRK11160 6 PFLKLYKRHWF-MLSLGILLAIVTLLASIGLLTLSGWFLSASAVAG-LAGLYSFNYMLPAAGVRGAAIGRTAGRYGERLV 83 (574)
T ss_pred HHHHHHhhhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-ccchhhHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444443332 3334444444444444455567889998643111 000000000111222334455666778888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCchhhccCCChhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001438 125 WMYTGERQAAKMRMAYLRSMLNQDISLFDTEASTGEVISAITSDIIVVQDALSEKVGNFMHYISRFLGGFIIGFARVWQI 204 (1077)
Q Consensus 125 ~~~~~~~~~~~lr~~~~~~ll~~~~~~f~~~~~~G~i~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 204 (1077)
..+.+.++..++|.++|++++++|+.+|++ .++|++++|+++|++.+++++...++.++..++.+++.++++++++|.+
T Consensus 84 ~~~~~~~~~~~lR~~l~~~l~~~~~~~~~~-~~~g~~~srl~~Dv~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l 162 (574)
T PRK11160 84 SHDATFRVLTHLRVFTFSKLLPLSPAGLAR-YRQGDLLNRLVADVDTLDHLYLRLISPLVAALVVILVLTIGLSFFDLTL 162 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccChHhhcc-CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888999999999999999999999999998 4899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHH
Q 001438 205 SLVTLSIVPLIALA-GGMYAYVTIGLIARVRKSYVKAGEIAEEVIGNVRTVQAFAGEDKAVKVYKEALSNTYKYGRKAGL 283 (1077)
Q Consensus 205 ~l~~l~~~pl~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 283 (1077)
++++++++|+++++ ..++.+..++..++.++..++..+.+.|.++|+++||+|+.|+.+.++|++..++..+...+..+
T Consensus 163 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 242 (574)
T PRK11160 163 ALTLGGILLLLLLLLPLLFYRLGKKPGQDLTHLRAQYRVQLTEWLQGQAELTLFGAEDRYRQQLEQTEQQWLAAQRRQAN 242 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHCCHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99888888876654 35567777788888888999999999999999999999999999999999999999999999988
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHH-HHHHHHHhHHHHHHHHHHHHHHHHHHHHhccC
Q 001438 284 AKGLGLGSMHCVLFLSWSLLVWYVSVVVHKHISNGGESFTTMLNVVI-AGLSLGQAAPDITAFIRAKAAAYPIFEMIERD 362 (1077)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~g~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~~ 362 (1077)
..+...++..++..+..++++++|++++ .|.++.|.+++++.+... ...++..+...+..+++++++.+|+.++++.+
T Consensus 243 ~~~~~~~~~~~~~~~~~~~i~~~g~~~~-~g~~t~g~l~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~s~~ri~~ll~~~ 321 (574)
T PRK11160 243 LTGLSQALMILANGLTVVLMLWLAAGGV-GGNAQPGALIALFVFAALAAFEALMPVAGAFQHLGQVIASARRINEITEQK 321 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 8888888777777777788889998884 788899988776544333 23466667778888999999999999999876
Q ss_pred cccccccccCCCCCCCcccEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEE
Q 001438 363 TMSKASSKTGRKLDKLSGHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEIL 442 (1077)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~ 442 (1077)
++.+.... ....+..+.|+++||+|+|++. ++++|+|+||++++||+++|+||||||||||+++|+|+|+|++|+|.
T Consensus 322 ~~~~~~~~--~~~~~~~~~i~~~~v~f~y~~~-~~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~~G~I~ 398 (574)
T PRK11160 322 PEVTFPTT--STAAADQVSLTLNNVSFTYPDQ-PQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEIL 398 (574)
T ss_pred CCCCCCcc--cCCCCCCCeEEEEEEEEECCCC-CCcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEE
Confidence 54321111 1112234679999999999753 24699999999999999999999999999999999999999999999
Q ss_pred ECCeeCCCCCHHHHhhheeEEccCCCcccccHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCC
Q 001438 443 LDGNNIKGLDLKWLRQQIGLVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLS 522 (1077)
Q Consensus 443 ~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LS 522 (1077)
+||+|+++++.+++|++|+||||||++|++|++|||.++.++.+++++.++++.++++++++. |+|+||.+||+|.+||
T Consensus 399 i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~al~~~~l~~~i~~-p~GldT~vge~g~~LS 477 (574)
T PRK11160 399 LNGQPIADYSEAALRQAISVVSQRVHLFSATLRDNLLLAAPNASDEALIEVLQQVGLEKLLED-DKGLNAWLGEGGRQLS 477 (574)
T ss_pred ECCEEhhhCCHHHHHhheeEEcccchhhcccHHHHhhcCCCccCHHHHHHHHHHcCCHHHHcC-ccccCchhcCCCCCCC
Confidence 999999999999999999999999999999999999999888899999999999999999999 9999999999999999
Q ss_pred hHHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEccCchhHhhcCEEEEEECCEEEEecCh
Q 001438 523 GGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRNADVIAVVQGRKIVKTGSH 602 (1077)
Q Consensus 523 gGqkqri~lARal~~~p~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~vtH~~~~~~~~d~i~~l~~G~i~~~g~~ 602 (1077)
||||||++||||++++|+|+|||||||+||+++++.+++.|.+..+++|+|+||||+++++.||+|++|++|+++|.|+|
T Consensus 478 gGqrqRialARall~~~~ililDE~ts~lD~~t~~~i~~~l~~~~~~~tviiitHr~~~~~~~d~i~~l~~G~i~~~g~~ 557 (574)
T PRK11160 478 GGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHAQNKTVLMITHRLTGLEQFDRICVMDNGQIIEQGTH 557 (574)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEecChhHHHhCCEEEEEeCCeEEEeCCH
Confidence 99999999999999999999999999999999999999999998889999999999999999999999999999999999
Q ss_pred hHHhcCCCchHHHHHH
Q 001438 603 EELISNPNSAYAALVQ 618 (1077)
Q Consensus 603 ~~l~~~~~~~~~~~~~ 618 (1077)
+|++++ ++.|+++++
T Consensus 558 ~~l~~~-~g~y~~l~~ 572 (574)
T PRK11160 558 QELLAQ-QGRYYQLKQ 572 (574)
T ss_pred HHHHhc-CcHHHHHHh
Confidence 999987 899999875
|
|
| >TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-80 Score=767.07 Aligned_cols=535 Identities=26% Similarity=0.363 Sum_probs=470.7
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHhcccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001438 64 GACVHGVSVPVFFIFFGKLINIIGLAYLFPKTASHKVAKYSLDFVYLSVAILFSSWIEVSCWMYTGERQAAKMRMAYLRS 143 (1077)
Q Consensus 64 ~~~~~~~~~p~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ 143 (1077)
++++..++....|++++.++|.+.... ...........++++.++..++.+++.+...+.+.++..++|..+|++
T Consensus 155 ~~~~~~l~~l~~p~~~~~iiD~~~~~~-----~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 229 (694)
T TIGR03375 155 ASLLINLLALASPLFVMNVYDRVVPNQ-----AFETLWVLAIGVALAIVFDFVLKTLRSYFLDVAGKKADLILSAKLFER 229 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcC-----cHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444457788898754321 111222233334444555667888888888899999999999999999
Q ss_pred HHhCCchhhccCCChhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001438 144 MLNQDISLFDTEASTGEVISAITSDIIVVQDALSEKVGNFMHYISRFLGGFIIGFARVWQISLVTLSIVPLIALAGGMYA 223 (1077)
Q Consensus 144 ll~~~~~~f~~~~~~G~i~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~l~~~pl~~~~~~~~~ 223 (1077)
+++.|+.+ ++ .++|++++|+ +|++.+++.+...+...+..+..+++.++++++++|.++++.++.+|+++++..++.
T Consensus 230 ll~l~~~~-~~-~~~G~~~~r~-~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~~~~l~~~~~~~~~ 306 (694)
T TIGR03375 230 VLGLRMEA-RP-ASVGSFANQL-REFESVRDFFTSATLTALIDLPFALLFLLVIAIIGGPLVWVPLVAIPLILLPGLLLQ 306 (694)
T ss_pred HhCCCccc-CC-CChhHHHHHH-HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 99999998 55 4899999999 799999999988888888888888888888999999999999999999999989999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001438 224 YVTIGLIARVRKSYVKAGEIAEEVIGNVRTVQAFAGEDKAVKVYKEALSNTYKYGRKAGLAKGLGLGSMHCVLFLSWSLL 303 (1077)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (1077)
+..++..++.++..++..+.+.|.++|+++||+|++|+.+.+++++..++..+...+..++.+....+..++..++.+++
T Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 386 (694)
T TIGR03375 307 RPLSRLAEESMRESAQRNAVLVESLSGLETIKALNAEGRFQRRWEQTVAALARSGLKSRFLSNLATNFAQFIQQLVSVAI 386 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999988888888777777777888888
Q ss_pred HHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhccCcccccccccCCCCCCCcccEE
Q 001438 304 VWYVSVVVHKHISNGGESFTTMLNVVIAGLSLGQAAPDITAFIRAKAAAYPIFEMIERDTMSKASSKTGRKLDKLSGHIE 383 (1077)
Q Consensus 304 ~~~g~~~v~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~~~~~~~~i~ 383 (1077)
+++|++++.+|.+|+|.+++++.+......|+..+...+..+.+++++.+|+.++++.+++.+... ......+..+.|+
T Consensus 387 l~~g~~~v~~g~ls~G~l~a~~~~~~~~~~p~~~l~~~~~~~~~~~~~~~ri~~il~~~~e~~~~~-~~~~~~~~~~~I~ 465 (694)
T TIGR03375 387 VVVGVYLISDGELTMGGLIACVMLSGRALAPLGQLAGLLTRYQQAKTALQSLDELMQLPVERPEGT-RFLHRPRLQGEIE 465 (694)
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCC-CCCCCCCccceEE
Confidence 999999999999999999988877777788999999999999999999999999998765422111 1111122346899
Q ss_pred EEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHHHhhheeEE
Q 001438 384 FKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIGLV 463 (1077)
Q Consensus 384 ~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v 463 (1077)
++||+|+|++. ++++|+|+||+|++||++|||||||||||||+++|+|+|+|++|+|.+||+|+++++.+++|++|+||
T Consensus 466 ~~~vsf~Y~~~-~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~l~~~~~~~lr~~i~~v 544 (694)
T TIGR03375 466 FRNVSFAYPGQ-ETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQIDPADLRRNIGYV 544 (694)
T ss_pred EEEEEEEeCCC-CccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhccEEE
Confidence 99999999753 34699999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCcccccHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHHhccCCCEEE
Q 001438 464 NQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILL 543 (1077)
Q Consensus 464 ~Q~~~lf~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~~~p~ill 543 (1077)
||+|++|++||+|||.++.++.+++++.++++.++++++++.+|+|+||.+||+|.+||||||||++||||++++|+|+|
T Consensus 545 ~Q~~~lf~~TI~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgGQrQRlalARall~~p~ili 624 (694)
T TIGR03375 545 PQDPRLFYGTLRDNIALGAPYADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQAVALARALLRDPPILL 624 (694)
T ss_pred CCChhhhhhhHHHHHhCCCCCCCHHHHHHHHHHcChHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCCEEE
Confidence 99999999999999999988889999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEccCchhHhhcCEEEEEECCEEEEecChhHHhcC
Q 001438 544 LDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRNADVIAVVQGRKIVKTGSHEELISN 608 (1077)
Q Consensus 544 lDEpts~lD~~~~~~i~~~l~~~~~~~t~i~vtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~ 608 (1077)
||||||+||+++++.+++.|.+..+++|+|+||||+++++.||+|++|++|+++|.|+|+||+++
T Consensus 625 LDE~Ts~LD~~te~~i~~~l~~~~~~~T~iiItHrl~~~~~~D~iivl~~G~i~e~G~~~eLl~~ 689 (694)
T TIGR03375 625 LDEPTSAMDNRSEERFKDRLKRWLAGKTLVLVTHRTSLLDLVDRIIVMDNGRIVADGPKDQVLEA 689 (694)
T ss_pred EeCCCCCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhCCEEEEEeCCEEEeeCCHHHHHHH
Confidence 99999999999999999999998889999999999999999999999999999999999999864
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export. |
| >COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-79 Score=689.92 Aligned_cols=551 Identities=25% Similarity=0.337 Sum_probs=478.5
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHhcccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001438 62 SIGACVHGVSVPVFFIFFGKLINIIGLAYLFPKTASHKVAKYSLDFVYLSVAILFSSWIEVSCWMYTGERQAAKMRMAYL 141 (1077)
Q Consensus 62 ~~~~~~~~~~~p~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~ 141 (1077)
.++.++.+++...+.+++..+++.+.... .......+...++++.++..++.+.+.....+.+.++...+|..++
T Consensus 6 ~ll~~l~~i~~i~qa~llA~~l~~l~~~~-----~~~~l~~~~~~l~~~~~lRa~l~~~~~~~~~~aa~~~~~~LR~~~l 80 (559)
T COG4988 6 ALLAVLSGIAIIAQAALLADILTKLIEGQ-----LFQSLLPLLILLLIALVLRAFLAWLRERLGYRAAAKVRASLRQLVL 80 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcc-----cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445555555556666666653221 1233344555566666777788888888888899999999999999
Q ss_pred HHHHhCCchhhccCCChhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001438 142 RSMLNQDISLFDTEASTGEVISAITSDIIVVQDALSEKVGNFMHYISRFLGGFIIGFARVWQISLVTLSIVPLIALAGGM 221 (1077)
Q Consensus 142 ~~ll~~~~~~f~~~~~~G~i~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~l~~~pl~~~~~~~ 221 (1077)
+++.+.+..+-++ .++|+..+.++.-++.++.+++..+++++...+..+..++.++.++|.-+++.++++|++.+++.+
T Consensus 81 ~~l~~~gp~~~~~-~~~g~~atl~~egve~l~~Y~~ryLPq~~~~~ivp~~i~i~v~~~~w~aalIllit~PlIPlfMil 159 (559)
T COG4988 81 DKLAKLGPAFIAQ-KPAGSAATLALEGIEQLEPYYARYLPQMFLSAIVPLLILIAIFFFNWAAALILLITAPLIPLFMIL 159 (559)
T ss_pred HHHHhCChhhhcC-CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999888 599999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001438 222 YAYVTIGLIARVRKSYVKAGEIAEEVIGNVRTVQAFAGEDKAVKVYKEALSNTYKYGRKAGLAKGLGLGSMHCVLFLSWS 301 (1077)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (1077)
+++..++..++..+.+...+..+-+.++|+.|+|.|+..+...+++.+..++..+..++.-+..-+......++..++.+
T Consensus 160 vg~~a~~~s~~~~~~~~~ls~~FLD~LrGL~TLr~f~~~~~~~~~i~~~se~fR~~TM~vLriAflSs~vLeffa~lsiA 239 (559)
T COG4988 160 VGLAAKDASEKQFSALARLSGHFLDRLRGLETLRAFGRTEATEERIRKDSEDFRKATMSVLRIAFLSSAVLEFFAYLSIA 239 (559)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHhcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999998888777666666677777777777
Q ss_pred HHHHHHHHHHHh-cccCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhccCcccccccccCCCCCCCcc
Q 001438 302 LLVWYVSVVVHK-HISNGGESFTTMLNVVIAGLSLGQAAPDITAFIRAKAAAYPIFEMIERDTMSKASSKTGRKLDKLSG 380 (1077)
Q Consensus 302 ~~~~~g~~~v~~-~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~~~~~~~ 380 (1077)
++..+.+..... |.++....+.+++..-=...|+..+...++.-+.+.++.+.++.+++.++...+........+..+.
T Consensus 240 lvAv~~g~~ll~~G~ltl~~~l~~LiLAPEff~PlR~lGs~fH~~~~g~aa~d~i~~~l~~~~~~~~~~~~~~~~~~~~~ 319 (559)
T COG4988 240 LVAVYIGFRLLGEGDLTLFAGLFVLILAPEFFQPLRDLGSFFHAAAAGEAAADKLFTLLESPVATPGSGEKAEVANEPPI 319 (559)
T ss_pred HHHHHHHHHHHccCCccHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhcCCCCCCCCccccccccCCCc
Confidence 776666665566 6777666555444333346788999999999999999999999999876543222111111122234
Q ss_pred cEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHHHhhhe
Q 001438 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQI 460 (1077)
Q Consensus 381 ~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i 460 (1077)
+++++|++|.|++.+ ++++|+||++++|++++|||+||||||||+++|+|+++|++|+|.+||+++++++.+.||+++
T Consensus 320 ei~~~~l~~~y~~g~--~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l~~l~~~~~~k~i 397 (559)
T COG4988 320 EISLENLSFRYPDGK--PALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQI 397 (559)
T ss_pred eeeecceEEecCCCC--cccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCccccccCHHHHHhHe
Confidence 566679999998653 799999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEccCCCcccccHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHHhccCCC
Q 001438 461 GLVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPS 540 (1077)
Q Consensus 461 ~~v~Q~~~lf~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~~~p~ 540 (1077)
+||||+|++|++|+||||.+++++.+++++.++++.+++.+++.. |+|+||.+||+|.+|||||+||+++|||++++++
T Consensus 398 ~~v~Q~p~lf~gTireNi~l~~~~~s~e~i~~al~~a~l~~~v~~-p~GLdt~ige~G~~LSgGQ~QRlaLARAll~~~~ 476 (559)
T COG4988 398 SWVSQNPYLFAGTIRENILLARPDASDEEIIAALDQAGLLEFVPK-PDGLDTVIGEGGAGLSGGQAQRLALARALLSPAS 476 (559)
T ss_pred eeeCCCCccccccHHHHhhccCCcCCHHHHHHHHHHhcHHHhhcC-CCcccchhccCCCCCCHHHHHHHHHHHHhcCCCC
Confidence 999999999999999999999999999999999999999999999 9999999999999999999999999999999999
Q ss_pred EEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEccCchhHhhcCEEEEEECCEEEEecChhHHhcCCCchHHHHHHHH
Q 001438 541 ILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRNADVIAVVQGRKIVKTGSHEELISNPNSAYAALVQLQ 620 (1077)
Q Consensus 541 illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~vtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~ 620 (1077)
++|||||||+||.++|+.|.+.|.++.+++|+|+||||++.+++||+|+|||+|+++|.|+|++|.++ ++.|++++..|
T Consensus 477 l~llDEpTA~LD~etE~~i~~~l~~l~~~ktvl~itHrl~~~~~~D~I~vld~G~l~~~g~~~~L~~~-~~~y~~l~~~q 555 (559)
T COG4988 477 LLLLDEPTAHLDAETEQIILQALQELAKQKTVLVITHRLEDAADADRIVVLDNGRLVEQGTHEELSEK-QGLYANLLKQQ 555 (559)
T ss_pred EEEecCCccCCCHhHHHHHHHHHHHHHhCCeEEEEEcChHHHhcCCEEEEecCCceeccCCHHHHhhc-CcHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999987 89999999876
Q ss_pred HH
Q 001438 621 EA 622 (1077)
Q Consensus 621 ~~ 622 (1077)
+.
T Consensus 556 ~~ 557 (559)
T COG4988 556 EG 557 (559)
T ss_pred hc
Confidence 53
|
|
| >PRK11176 lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-79 Score=747.71 Aligned_cols=547 Identities=31% Similarity=0.478 Sum_probs=475.3
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHhcccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001438 63 IGACVHGVSVPVFFIFFGKLINIIGLAYLFPKTASHKVAKYSLDFVYLSVAILFSSWIEVSCWMYTGERQAAKMRMAYLR 142 (1077)
Q Consensus 63 ~~~~~~~~~~p~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~ 142 (1077)
++.++..+.....+.+++.++|...... .........+.+++++++..++.+++.++..+.+.++..++|..+++
T Consensus 32 ~~~~~~~~~~~~~~~~~~~~id~~~~~~-----~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~ 106 (582)
T PRK11176 32 VALILNAASDTFMLSLLKPLLDDGFGKA-----DRSVLKWMPLVVIGLMILRGITSFISSYCISWVSGKVVMTMRRRLFG 106 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccC-----chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333434444444556777887653211 01111112222333455566777777777788899999999999999
Q ss_pred HHHhCCchhhccCCChhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001438 143 SMLNQDISLFDTEASTGEVISAITSDIIVVQDALSEKVGNFMHYISRFLGGFIIGFARVWQISLVTLSIVPLIALAGGMY 222 (1077)
Q Consensus 143 ~ll~~~~~~f~~~~~~G~i~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~l~~~pl~~~~~~~~ 222 (1077)
++++.|.++|++ .++|++++|+++|++.+++.+...+..++..++.+++.++++++++|.+++++++++|+.+++....
T Consensus 107 ~l~~~~~~~~~~-~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~l~~~~l~~~~~~~~ 185 (582)
T PRK11176 107 HMMGMPVSFFDK-QSTGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQLSLILIVIAPIVSIAIRVV 185 (582)
T ss_pred HHHcCCHHHhCC-CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999998 4899999999999999999999999999999999999999999999999999999889888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001438 223 AYVTIGLIARVRKSYVKAGEIAEEVIGNVRTVQAFAGEDKAVKVYKEALSNTYKYGRKAGLAKGLGLGSMHCVLFLSWSL 302 (1077)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (1077)
.+..++..++.++..++....+.|.++|+++||+|+.|+.+.++|++..++..+...+..+..+.......++..+..++
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (582)
T PRK11176 186 SKRFRNISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNRMRQQGMKMVSASSISDPIIQLIASLALAF 265 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888999999999999999999999999999999999999999988888888777777777777777778
Q ss_pred HHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhccCcccccccccCCCCCCCcccE
Q 001438 303 LVWYVSVVVHKHISNGGESFTTMLNVVIAGLSLGQAAPDITAFIRAKAAAYPIFEMIERDTMSKASSKTGRKLDKLSGHI 382 (1077)
Q Consensus 303 ~~~~g~~~v~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~~~~~~~~i 382 (1077)
++++|++.+..|.+++|.+.+++.+......|+..+...+..+.+++.+.+|+.++++.+++.+.. ....++..+.|
T Consensus 266 i~~~g~~~~~~g~is~g~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~---~~~~~~~~~~i 342 (582)
T PRK11176 266 VLYAASFPSVMDTLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDLEQEKDEG---KRVIERAKGDI 342 (582)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCCC---CcCCCCCCCeE
Confidence 889999999999999999877777666677889998889999999999999999999765432211 11112234579
Q ss_pred EEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHHHhhheeE
Q 001438 383 EFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIGL 462 (1077)
Q Consensus 383 ~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~ 462 (1077)
+++||+|+|+++ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||+|+++++.+++|++|+|
T Consensus 343 ~~~~vsf~y~~~-~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i~~ 421 (582)
T PRK11176 343 EFRNVTFTYPGK-EVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDLRDYTLASLRNQVAL 421 (582)
T ss_pred EEEEEEEecCCC-CCccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCCCCceEEECCEEhhhcCHHHHHhhceE
Confidence 999999999754 3579999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EccCCCcccccHHHHHhcCCCC-CCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHHhccCCCE
Q 001438 463 VNQEPALFATTIRENILYGKDD-ATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSI 541 (1077)
Q Consensus 463 v~Q~~~lf~~ti~~ni~~~~~~-~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~~~p~i 541 (1077)
|||||++|++|++|||.++.++ .++++++++++.++++++++++|+|+||.+||+|.+|||||||||+||||++++|+|
T Consensus 422 v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSGGqrQRi~LARall~~~~i 501 (582)
T PRK11176 422 VSQNVHLFNDTIANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLRDSPI 501 (582)
T ss_pred EccCceeecchHHHHHhcCCCCCCCHHHHHHHHHHhCcHHHHHhcccccCceeCCCCCcCCHHHHHHHHHHHHHHhCCCE
Confidence 9999999999999999998754 789999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEccCchhHhhcCEEEEEECCEEEEecChhHHhcCCCchHHHHHHHH
Q 001438 542 LLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRNADVIAVVQGRKIVKTGSHEELISNPNSAYAALVQLQ 620 (1077)
Q Consensus 542 lllDEpts~lD~~~~~~i~~~l~~~~~~~t~i~vtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~ 620 (1077)
+|||||||+||+++++.+.+.|.+..+++|+|+||||++.++.||+|++|++|+++|.|+|++++++ ++.|+++++.|
T Consensus 502 lilDEptsaLD~~t~~~i~~~l~~~~~~~tvI~VtHr~~~~~~~D~Ii~l~~g~i~e~g~~~~l~~~-~~~y~~l~~~~ 579 (582)
T PRK11176 502 LILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEKADEILVVEDGEIVERGTHAELLAQ-NGVYAQLHKMQ 579 (582)
T ss_pred EEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEEEEECCEEEEeCCHHHHHhC-CChHHHHHHHH
Confidence 9999999999999999999999998889999999999999999999999999999999999999987 78999998754
|
|
| >TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-78 Score=753.63 Aligned_cols=541 Identities=26% Similarity=0.386 Sum_probs=477.7
Q ss_pred HhHHHHHHHHHHHHHHHHhcccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q 001438 69 GVSVPVFFIFFGKLINIIGLAYLFPKTASHKVAKYSLDFVYLSVAILFSSWIEVSCWMYTGERQAAKMRMAYLRSMLNQD 148 (1077)
Q Consensus 69 ~~~~p~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~ 148 (1077)
.++....+++++.++|.+.... .........+.++++.++..++.+++.+.....+.++..++|.++|++++++|
T Consensus 152 ~ll~l~~p~~~~~iid~v~~~~-----~~~~l~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~l~~l~ 226 (694)
T TIGR01846 152 QLFALVTPLLFQVVIDKVLVHR-----GLSTLSVLALAMLAVAIFEPALGGLRTYLFAHLTSRIDVELGARLYRHLLGLP 226 (694)
T ss_pred HHHHHHHHHHHHHHHHHhhccC-----ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 3333444457788898764311 11223333444555556677888888889999999999999999999999999
Q ss_pred chhhccCCChhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001438 149 ISLFDTEASTGEVISAITSDIIVVQDALSEKVGNFMHYISRFLGGFIIGFARVWQISLVTLSIVPLIALAGGMYAYVTIG 228 (1077)
Q Consensus 149 ~~~f~~~~~~G~i~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~l~~~pl~~~~~~~~~~~~~~ 228 (1077)
+++|++ .++|++++|+ +|++.+++++...+...+..+...++.++++++++|.+++++++++|+++++..++.+..++
T Consensus 227 ~~~f~~-~~~g~~~~rl-~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~~~~~~~~i~~~~~~~~~~ 304 (694)
T TIGR01846 227 LGYFES-RRVGDTVARV-RELEQIRNFLTGSALTVVLDLLFVVVFLAVMFFYSPTLTGVVIGSLVCYALLSVFVGPILRK 304 (694)
T ss_pred HHHcCC-CCHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999998 5999999999 69999999998877777777777777788899999999999999999988888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001438 229 LIARVRKSYVKAGEIAEEVIGNVRTVQAFAGEDKAVKVYKEALSNTYKYGRKAGLAKGLGLGSMHCVLFLSWSLLVWYVS 308 (1077)
Q Consensus 229 ~~~~~~~~~~~~~~~~~E~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 308 (1077)
..++..+..++..+.+.|.++|+++||+||.|+.+.++|++..++..+...+.....+....+..++..+..++++++|+
T Consensus 305 ~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~il~~g~ 384 (694)
T TIGR01846 305 RVEDKFERSAAATSFLVESVTGIETIKATATEPQFQNRWDRQLAAYVAASFRVTNLGNIAGQAIELIQKLTFAILLWFGA 384 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 88888888889999999999999999999999999999999999999988888888888777777777788888999999
Q ss_pred HHHHhcccCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhccCcccccccccCCCCCCCcccEEEEeEE
Q 001438 309 VVVHKHISNGGESFTTMLNVVIAGLSLGQAAPDITAFIRAKAAAYPIFEMIERDTMSKASSKTGRKLDKLSGHIEFKDVS 388 (1077)
Q Consensus 309 ~~v~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~v~ 388 (1077)
+++..|.+|+|.++++..+......|+..+...+..+++++.+.+|+.++++.+++.+.. .....+...+.|+++||+
T Consensus 385 ~lv~~g~it~G~lia~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~~--~~~~~~~~~~~i~~~~vs 462 (694)
T TIGR01846 385 HLVIGGALSPGQLVAFNMLAGRVTQPVLRLAQLWQDFQQTGIALERLGDILNSPTEPRSA--GLAALPELRGAITFENIR 462 (694)
T ss_pred HHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCccCC--CCCCCCCCCCeEEEEEEE
Confidence 999999999999988877777777899999999999999999999999999876543211 111122335689999999
Q ss_pred EEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHHHhhheeEEccCCC
Q 001438 389 FCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIGLVNQEPA 468 (1077)
Q Consensus 389 ~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~ 468 (1077)
|+|++. ++++|+|+||+|++||+++|+|+||||||||+++|+|+|+|++|+|.+||+|+++++.+++|++|+||||+|+
T Consensus 463 f~y~~~-~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~~G~I~idg~~i~~~~~~~~r~~i~~v~q~~~ 541 (694)
T TIGR01846 463 FRYAPD-SPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDLAIADPAWLRRQMGVVLQENV 541 (694)
T ss_pred EEcCCC-CccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEehhhCCHHHHHHhCeEEccCCe
Confidence 999754 3469999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHHhccCCCEEEEeCcC
Q 001438 469 LFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEAT 548 (1077)
Q Consensus 469 lf~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~~~p~illlDEpt 548 (1077)
+|++|++|||.++.++.+++++.++|+.+++.++++.+|+|+||.+|++|.+||||||||++||||++++|+|+||||||
T Consensus 542 lf~~ti~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~qri~lARall~~~~ililDEpt 621 (694)
T TIGR01846 542 LFSRSIRDNIALCNPGAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQRIAIARALVGNPRILIFDEAT 621 (694)
T ss_pred ehhhhHHHHHhcCCCCCCHHHHHHHHHHcChHHHHHhCcCccCcEecCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECCC
Confidence 99999999999998888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHhCCCeEEEEccCchhHhhcCEEEEEECCEEEEecChhHHhcCCCchHHHHHHHH
Q 001438 549 SALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRNADVIAVVQGRKIVKTGSHEELISNPNSAYAALVQLQ 620 (1077)
Q Consensus 549 s~lD~~~~~~i~~~l~~~~~~~t~i~vtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~ 620 (1077)
|+||+++++.+.+.|++..+++|+|+||||++.++.||+|++|++|++++.|+|+|++++ ++.|+++++.|
T Consensus 622 s~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~ii~l~~G~i~~~g~~~~l~~~-~~~y~~l~~~~ 692 (694)
T TIGR01846 622 SALDYESEALIMRNMREICRGRTVIIIAHRLSTVRACDRIIVLEKGQIAESGRHEELLAL-QGLYARLWQQQ 692 (694)
T ss_pred cCCCHHHHHHHHHHHHHHhCCCEEEEEeCChHHHHhCCEEEEEeCCEEEEeCCHHHHHHc-CChHHHHHHhh
Confidence 999999999999999998889999999999999999999999999999999999999987 79999998754
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-78 Score=738.95 Aligned_cols=566 Identities=26% Similarity=0.350 Sum_probs=466.9
Q ss_pred HHHHHHhhchhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 001438 43 LFKLFAFADFYDYILMSLGSIGACVHGVSVPVFFIFFGKLINIIGLAYLFPKTASHKVAKYSLDFVYLSVAILFSSWIEV 122 (1077)
Q Consensus 43 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (1077)
+++++.+..++++ .+.+.+++.++..++.+..+++++.++|...... .. . ......+.+.++++.++..++.+++.
T Consensus 11 ~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~p~~~~~iid~~~~~~-~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (592)
T PRK10790 11 LKRLLAYGSPWRK-PLGLAVLMLWVAAAAEVSGPLLISYFIDNMVAKG-NL-P-LGLVAGLAAAYVGLQLLAAGLHYAQS 86 (592)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-Cc-c-hhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444433332 2334444455555555666678889999754211 10 0 01111122223333445556677777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCchhhccCCChhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001438 123 SCWMYTGERQAAKMRMAYLRSMLNQDISLFDTEASTGEVISAITSDIIVVQDALSEKVGNFMHYISRFLGGFIIGFARVW 202 (1077)
Q Consensus 123 ~~~~~~~~~~~~~lr~~~~~~ll~~~~~~f~~~~~~G~i~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (1077)
+.....+.+...++|.++|+++++.|.++|++ .++|++++|+++|++.+++.+...+..++..+..+++.++++++++|
T Consensus 87 ~~~~~~~~~~~~~lr~~l~~~l~~~~~~~~~~-~~~g~~~~~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (592)
T PRK10790 87 LLFNRAAVGVVQQLRTDVMDAALRQPLSAFDT-QPVGQLISRVTNDTEVIRDLYVTVVATVLRSAALIGAMLVAMFSLDW 165 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCC-CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77888889999999999999999999999998 49999999999999999999999999999999888888888999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHH
Q 001438 203 QISLVTLSIVPLIALAGGMYAYVTIGLIARVRKSYVKAGEIAEEVIGNVRTVQAFAGEDKAVKVYKEALSNTYKYGRKAG 282 (1077)
Q Consensus 203 ~l~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~ 282 (1077)
.+++++++++|++++...+..+..++..++.++..++..+.+.|.++|+++||.|+.|+.+.+++.+..++..+...+..
T Consensus 166 ~l~li~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (592)
T PRK10790 166 RMALVAIMIFPAVLVVMVIYQRYSTPIVRRVRAYLADINDGFNEVINGMSVIQQFRQQARFGERMGEASRSHYMARMQTL 245 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999888888887777777777777777777888888899999999999999999999999999999888777777666
Q ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcc
Q 001438 283 LAKGLG-LGSMHCVLFLSWSLLVWYVSVVVHKHISNGGESFTTMLNVVIAGLSLGQAAPDITAFIRAKAAAYPIFEMIER 361 (1077)
Q Consensus 283 ~~~~~~-~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~ 361 (1077)
...++. ..+..++..+...+++++++. +..|.+++|.+++++.+......|+..+...+..+.+++.+.+|+.++++.
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~is~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~s~~ri~~~l~~ 324 (592)
T PRK10790 246 RLDGFLLRPLLSLFSALILCGLLMLFGF-SASGTIEVGVLYAFISYLGRLNEPLIELTTQQSMLQQAVVAGERVFELMDG 324 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 655543 222223322222222233333 568899999988887777777888999999999999999999999999976
Q ss_pred CcccccccccCCCCCCCcccEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEE
Q 001438 362 DTMSKASSKTGRKLDKLSGHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEI 441 (1077)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i 441 (1077)
+++... . ...+...+.|+++|++|+|+++ +++|+|+||++++||+++|+|+||||||||+++|+|+|+|++|+|
T Consensus 325 ~~~~~~-~---~~~~~~~~~i~~~~v~f~y~~~--~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I 398 (592)
T PRK10790 325 PRQQYG-N---DDRPLQSGRIDIDNVSFAYRDD--NLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEI 398 (592)
T ss_pred CCccCC-C---CccCCCCCeEEEEEEEEEeCCC--CceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceE
Confidence 543211 1 1112234679999999999743 469999999999999999999999999999999999999999999
Q ss_pred EECCeeCCCCCHHHHhhheeEEccCCCcccccHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCC
Q 001438 442 LLDGNNIKGLDLKWLRQQIGLVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQL 521 (1077)
Q Consensus 442 ~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~L 521 (1077)
.+||+|+++++.+++|++|+||||+|++|++|++|||.++. +.++++++++++.++++++++.+|+|+||.+||+|.+|
T Consensus 399 ~idg~~i~~~~~~~l~~~i~~v~Q~~~lF~~Ti~~NI~~~~-~~~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~L 477 (592)
T PRK10790 399 RLDGRPLSSLSHSVLRQGVAMVQQDPVVLADTFLANVTLGR-DISEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNL 477 (592)
T ss_pred EECCEEhhhCCHHHHHhheEEEccCCccccchHHHHHHhCC-CCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCC
Confidence 99999999999999999999999999999999999999997 67899999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEccCchhHhhcCEEEEEECCEEEEecC
Q 001438 522 SGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRNADVIAVVQGRKIVKTGS 601 (1077)
Q Consensus 522 SgGqkqri~lARal~~~p~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~vtH~~~~~~~~d~i~~l~~G~i~~~g~ 601 (1077)
||||||||+||||++++|+|+|||||||+||+++++.+.+.|++..+++|+|+||||++.++.||+|++|++|++++.|+
T Consensus 478 SGGqrQRialARaLl~~~~illlDEpts~LD~~t~~~i~~~l~~~~~~~tvIivtHr~~~l~~~D~ii~l~~G~i~~~G~ 557 (592)
T PRK10790 478 SVGQKQLLALARVLVQTPQILILDEATANIDSGTEQAIQQALAAVREHTTLVVIAHRLSTIVEADTILVLHRGQAVEQGT 557 (592)
T ss_pred CHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEEEEECCEEEEEcC
Confidence 99999999999999999999999999999999999999999999888899999999999999999999999999999999
Q ss_pred hhHHhcCCCchHHHHHHHHHH
Q 001438 602 HEELISNPNSAYAALVQLQEA 622 (1077)
Q Consensus 602 ~~~l~~~~~~~~~~~~~~~~~ 622 (1077)
|+|++++ ++.|+++++.+..
T Consensus 558 ~~~L~~~-~~~y~~l~~~~~~ 577 (592)
T PRK10790 558 HQQLLAA-QGRYWQMYQLQLA 577 (592)
T ss_pred HHHHHhC-CCHHHHHHHHHhh
Confidence 9999987 7999999987643
|
|
| >TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-78 Score=735.31 Aligned_cols=553 Identities=31% Similarity=0.467 Sum_probs=490.6
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001438 57 LMSLGSIGACVHGVSVPVFFIFFGKLINIIGLAYLFPKTASHKVAKYSLDFVYLSVAILFSSWIEVSCWMYTGERQAAKM 136 (1077)
Q Consensus 57 ~~~~~~~~~~~~~~~~p~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 136 (1077)
.+++++++.++.+++.+..+++++.++|...... ...........++++.++..++.+++.+...+.+.++..++
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-----~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l 89 (571)
T TIGR02203 15 GLVLAGVAMILVAATESTLAALLKPLLDDGFGGR-----DRSVLWWVPLVVIGLAVLRGICSFVSTYLLSWVSNKVVRDI 89 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccC-----chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455556666666777777778888888643211 11222223334555566667778888888889999999999
Q ss_pred HHHHHHHHHhCCchhhccCCChhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001438 137 RMAYLRSMLNQDISLFDTEASTGEVISAITSDIIVVQDALSEKVGNFMHYISRFLGGFIIGFARVWQISLVTLSIVPLIA 216 (1077)
Q Consensus 137 r~~~~~~ll~~~~~~f~~~~~~G~i~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~l~~~pl~~ 216 (1077)
|..+++++++.|.+++++ .++|++++|+++|++.+++.+...+..++..+..+++.++++++++|.++++++++.|+.+
T Consensus 90 r~~l~~~~~~~~~~~~~~-~~~g~~~~~l~~di~~i~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~l~~i~l~~~~l~~ 168 (571)
T TIGR02203 90 RVRMFEKLLGLPVSFFDR-QPTGTLLSRITFDSEQVASAATDAFIVLVRETLTVIGLFIVLLYYSWQLTLIVVVMLPVLS 168 (571)
T ss_pred HHHHHHHHHcCCHHHhCC-CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 999999999999999998 5899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001438 217 LAGGMYAYVTIGLIARVRKSYVKAGEIAEEVIGNVRTVQAFAGEDKAVKVYKEALSNTYKYGRKAGLAKGLGLGSMHCVL 296 (1077)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (1077)
++..++.+..++..++.++..++..+.+.|.++|+++||.++.|+.+.+++++..++..+...+.....+....+..++.
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (571)
T TIGR02203 169 ILMRRVSKRLRRISKEIQNSMGQVTTVAEETLQGYRVVKLFGGQAYETRRFDAVSNRNRRLAMKMTSAGSISSPITQLIA 248 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99899999999999999999999999999999999999999999999999999999999988888888888777777777
Q ss_pred HHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhccCcccccccccCCCCC
Q 001438 297 FLSWSLLVWYVSVVVHKHISNGGESFTTMLNVVIAGLSLGQAAPDITAFIRAKAAAYPIFEMIERDTMSKASSKTGRKLD 376 (1077)
Q Consensus 297 ~~~~~~~~~~g~~~v~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~~~ 376 (1077)
.+..++++++|++++..|.+|+|.++++..++.....|+..+...+..+.+++++.+|+.++++.+++.+... ....
T Consensus 249 ~~~~~~~~~~g~~~~~~g~lt~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~---~~~~ 325 (571)
T TIGR02203 249 SLALAVVLFIALFQAQAGSLTAGDFTAFITAMIALIRPLKSLTNVNAPMQRGLAAAESLFTLLDSPPEKDTGT---RAIE 325 (571)
T ss_pred HHHHHHHHHHHHHHHHcCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCC---CCCC
Confidence 7788888999999999999999999998888888888999999999999999999999999998654422111 1112
Q ss_pred CCcccEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHHH
Q 001438 377 KLSGHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWL 456 (1077)
Q Consensus 377 ~~~~~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~ 456 (1077)
+..+.|+++||+|+|++. +.++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.+||+++++++.+++
T Consensus 326 ~~~~~i~~~~v~f~y~~~-~~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~i~g~~i~~~~~~~~ 404 (571)
T TIGR02203 326 RARGDVEFRNVTFRYPGR-DRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYTLASL 404 (571)
T ss_pred CCCCeEEEEEEEEEcCCC-CCccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEeHHhcCHHHH
Confidence 234679999999999754 3469999999999999999999999999999999999999999999999999999999999
Q ss_pred hhheeEEccCCCcccccHHHHHhcCCC-CCCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHHh
Q 001438 457 RQQIGLVNQEPALFATTIRENILYGKD-DATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAI 535 (1077)
Q Consensus 457 r~~i~~v~Q~~~lf~~ti~~ni~~~~~-~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal 535 (1077)
|++|+||||+|++|++|++|||.++.+ +.+++++.++++.+++++++.++|+|+||.+|++|.+|||||||||+||||+
T Consensus 405 ~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgGqrQRiaLARal 484 (571)
T TIGR02203 405 RRQVALVSQDVVLFNDTIANNIAYGRTEQADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQRQRLAIARAL 484 (571)
T ss_pred HhhceEEccCcccccccHHHHHhcCCCCCCCHHHHHHHHHHcChHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHH
Confidence 999999999999999999999999986 7899999999999999999999999999999999999999999999999999
Q ss_pred ccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEccCchhHhhcCEEEEEECCEEEEecChhHHhcCCCchHHH
Q 001438 536 VKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRNADVIAVVQGRKIVKTGSHEELISNPNSAYAA 615 (1077)
Q Consensus 536 ~~~p~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~vtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~ 615 (1077)
+++|+|+|||||||+||+++++.+.+.|++..+++|+|+||||++.++.||+|++|++|++++.|+|++++++ ++.|++
T Consensus 485 l~~~~illLDEpts~LD~~~~~~i~~~L~~~~~~~tiIiitH~~~~~~~~D~ii~l~~g~i~~~g~~~~l~~~-~~~~~~ 563 (571)
T TIGR02203 485 LKDAPILILDEATSALDNESERLVQAALERLMQGRTTLVIAHRLSTIEKADRIVVMDDGRIVERGTHNELLAR-NGLYAQ 563 (571)
T ss_pred hcCCCEEEEeCccccCCHHHHHHHHHHHHHHhCCCEEEEEehhhHHHHhCCEEEEEeCCEEEeeCCHHHHHHc-CCHHHH
Confidence 9999999999999999999999999999998889999999999999999999999999999999999999987 788888
Q ss_pred HHHHH
Q 001438 616 LVQLQ 620 (1077)
Q Consensus 616 ~~~~~ 620 (1077)
+++.+
T Consensus 564 ~~~~~ 568 (571)
T TIGR02203 564 LHNMQ 568 (571)
T ss_pred HHHHh
Confidence 77644
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes. |
| >PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-77 Score=728.67 Aligned_cols=565 Identities=27% Similarity=0.376 Sum_probs=469.7
Q ss_pred HHHHHHhhchhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 001438 43 LFKLFAFADFYDYILMSLGSIGACVHGVSVPVFFIFFGKLINIIGLAYLFPKTASHKVAKYSLDFVYLSVAILFSSWIEV 122 (1077)
Q Consensus 43 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (1077)
+++++++.+++ +..+.+.+++.++..++.+..+++++.++|.+... .........++++.++..+..++..
T Consensus 7 ~~~l~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~~iid~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (588)
T PRK13657 7 YARVLQYLGAE-KRLGILLAVANVLLAAATFAEPILFGRIIDAISGK--------GDIFPLLAAWAGFGLFNIIAGVLVA 77 (588)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--------ccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455444332 22333344444444445555556778889875321 0111111222222222233333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCchhhccCCChhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001438 123 SCWMYTGERQAAKMRMAYLRSMLNQDISLFDTEASTGEVISAITSDIIVVQDALSEKVGNFMHYISRFLGGFIIGFARVW 202 (1077)
Q Consensus 123 ~~~~~~~~~~~~~lr~~~~~~ll~~~~~~f~~~~~~G~i~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (1077)
....+...++..++|.++|+++++.|..+|++ .++|++++|+++|++.+.+.+...+..++..++.+++.+++++.++|
T Consensus 78 ~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~-~~~g~~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (588)
T PRK13657 78 RHADRLAHRRRLAVLTEYFERIIQLPLAWHSQ-RGSGRALHTLLRGTDALFGLWLEFMREHLATLVALVVLLPLALFMNW 156 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCHHHHCc-CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555566667779999999999999998 59999999999999999988887788888887777778888899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHH
Q 001438 203 QISLVTLSIVPLIALAGGMYAYVTIGLIARVRKSYVKAGEIAEEVIGNVRTVQAFAGEDKAVKVYKEALSNTYKYGRKAG 282 (1077)
Q Consensus 203 ~l~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~ 282 (1077)
.+++++++++|+.+++...+.+..++..++.++..++..+.+.|.++|+++||.|+.|+.+.+++.+..++..+...+..
T Consensus 157 ~l~l~~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (588)
T PRK13657 157 RLSLVLVVLGIVYTLITTLVMRKTKDGQAAVEEHYHDLFAHVSDAIGNVSVVQSYNRIEAETQALRDIADNLLAAQMPVL 236 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999998888888888888888888888888888999999999999999999999999999999999999888888877
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhccC
Q 001438 283 LAKGLGLGSMHCVLFLSWSLLVWYVSVVVHKHISNGGESFTTMLNVVIAGLSLGQAAPDITAFIRAKAAAYPIFEMIERD 362 (1077)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~~ 362 (1077)
...+....+..++..+..++++++|++++.+|.+|+|.+++++.+......|+..+...+..+.+++.+.+|+.++++.+
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~~~a~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~~ 316 (588)
T PRK13657 237 SWWALASVLNRAASTITMLAILVLGAALVQKGQLRVGEVVAFVGFATLLIGRLDQVVAFINQVFMAAPKLEEFFEVEDAV 316 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 77777777667777777788889999999999999999988877777777888888888999999999999999998764
Q ss_pred cccccccccCCCCCCCcccEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEE
Q 001438 363 TMSKASSKTGRKLDKLSGHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEIL 442 (1077)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~ 442 (1077)
++.+... ......+.++.|+++||+|+|+++ +++|+|+||+++|||+++|+|+||||||||+++|+|+|+|++|+|.
T Consensus 317 ~~~~~~~-~~~~~~~~~~~I~~~~vsf~y~~~--~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I~ 393 (588)
T PRK13657 317 PDVRDPP-GAIDLGRVKGAVEFDDVSFSYDNS--RQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRIL 393 (588)
T ss_pred cccCCCC-CCCCcCCCCCeEEEEEEEEEeCCC--CceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEE
Confidence 4322111 111112234579999999999743 3589999999999999999999999999999999999999999999
Q ss_pred ECCeeCCCCCHHHHhhheeEEccCCCcccccHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCC
Q 001438 443 LDGNNIKGLDLKWLRQQIGLVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLS 522 (1077)
Q Consensus 443 ~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LS 522 (1077)
+||+++++++.+++|++|+||||+|++|++|++|||.++.++.+++++.++++.+++.+++..+|+|+||.+|++|.+||
T Consensus 394 i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LS 473 (588)
T PRK13657 394 IDGTDIRTVTRASLRRNIAVVFQDAGLFNRSIEDNIRVGRPDATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLS 473 (588)
T ss_pred ECCEEhhhCCHHHHHhheEEEecCcccccccHHHHHhcCCCCCCHHHHHHHHHHhCHHHHHHhCcccccchhcCCCCCCC
Confidence 99999999999999999999999999999999999999988888999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEccCchhHhhcCEEEEEECCEEEEecCh
Q 001438 523 GGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRNADVIAVVQGRKIVKTGSH 602 (1077)
Q Consensus 523 gGqkqri~lARal~~~p~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~vtH~~~~~~~~d~i~~l~~G~i~~~g~~ 602 (1077)
||||||++||||++++|+|+|||||||+||+++++.+.+.|++..+++|+|+||||++.++.||+|++|++|++++.|+|
T Consensus 474 gGq~QRialARall~~~~iliLDEpts~LD~~t~~~i~~~l~~~~~~~tvIiitHr~~~~~~~D~ii~l~~G~i~~~g~~ 553 (588)
T PRK13657 474 GGERQRLAIARALLKDPPILILDEATSALDVETEAKVKAALDELMKGRTTFIIAHRLSTVRNADRILVFDNGRVVESGSF 553 (588)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhcCCEEEEEEecHHHHHhCCEEEEEECCEEEEeCCH
Confidence 99999999999999999999999999999999999999999988789999999999999999999999999999999999
Q ss_pred hHHhcCCCchHHHHHHHHH
Q 001438 603 EELISNPNSAYAALVQLQE 621 (1077)
Q Consensus 603 ~~l~~~~~~~~~~~~~~~~ 621 (1077)
++++++ ++.|.+++..+.
T Consensus 554 ~~l~~~-~~~y~~l~~~~~ 571 (588)
T PRK13657 554 DELVAR-GGRFAALLRAQG 571 (588)
T ss_pred HHHHHC-CChHHHHHHHhh
Confidence 999987 789999987654
|
|
| >TIGR01192 chvA glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-77 Score=722.52 Aligned_cols=565 Identities=26% Similarity=0.338 Sum_probs=473.8
Q ss_pred HHHHHHhhchhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 001438 43 LFKLFAFADFYDYILMSLGSIGACVHGVSVPVFFIFFGKLINIIGLAYLFPKTASHKVAKYSLDFVYLSVAILFSSWIEV 122 (1077)
Q Consensus 43 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (1077)
+++++++.++++ ..++++++++++..++.+..++++++++|.+... . . .....+.++++.++..+..++..
T Consensus 7 ~~~l~~~l~~~k-~~~~~~~~~~~~~~~~~~~~p~~~~~iid~~~~~---~-~----~~~~~~~~~~~~~~~~~~~~~~~ 77 (585)
T TIGR01192 7 YVRALSYLNVHK-NRVLLIVIANITLAAITIAEPILFGRIIDAISSK---S-D----VLPTLALWAGFGVFNTIAYVLVA 77 (585)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---c-c----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555554443 3344555666666667777778899999975421 0 0 01111112222223333333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCchhhccCCChhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001438 123 SCWMYTGERQAAKMRMAYLRSMLNQDISLFDTEASTGEVISAITSDIIVVQDALSEKVGNFMHYISRFLGGFIIGFARVW 202 (1077)
Q Consensus 123 ~~~~~~~~~~~~~lr~~~~~~ll~~~~~~f~~~~~~G~i~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (1077)
......+.++..++|.++|++++++|+++|++ .++|++++|+++|++.+++.+...+..++..++.+++.+++++.++|
T Consensus 78 ~~~~~~~~~~~~~lr~~~~~~l~~l~~~~~~~-~~~g~~~s~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 156 (585)
T TIGR01192 78 READRLAHGRRATLLTEAFGRIISMPLSWHQQ-RGTSNALHTLLRATETLFGLWLEFMRQHLATFVALFLLIPTAFAMDW 156 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCC-CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555667779999999999999998 48999999999999999999988888888888888888888999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHH
Q 001438 203 QISLVTLSIVPLIALAGGMYAYVTIGLIARVRKSYVKAGEIAEEVIGNVRTVQAFAGEDKAVKVYKEALSNTYKYGRKAG 282 (1077)
Q Consensus 203 ~l~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~ 282 (1077)
.+++++++++|++.++...+.++.++..++.++..++..+.+.|.++|+++||+|+.|+.+.+++++..++..+...+..
T Consensus 157 ~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (585)
T TIGR01192 157 RLSIVLMVLGILYILIAKLVMQRTKNGQAAVEHHYHNVFKHVSDSISNVSVVHSYNRIEAETSALKQFTNNLLSAQYPVL 236 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999988888888888888888888888899999999999999999999999999999999988888777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhccC
Q 001438 283 LAKGLGLGSMHCVLFLSWSLLVWYVSVVVHKHISNGGESFTTMLNVVIAGLSLGQAAPDITAFIRAKAAAYPIFEMIERD 362 (1077)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~~ 362 (1077)
...++...+..++..+..++++++|++++.+|.+++|.+++++.+......|+..+...+..+.+++.+.+|+.++++.+
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~v~~~g~~~v~~g~it~g~l~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~ri~~~~~~~ 316 (585)
T TIGR01192 237 DWWALASGLNRMASTISMMCILVIGTVLVIKGELSVGEVIAFIGFANLLIGRLDQMSGFITQIFEARAKLEDFFDLEDSV 316 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 77777766666666777778889999999999999999988777777777788888888999999999999999998765
Q ss_pred cccccccccCCCCCCCcccEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEE
Q 001438 363 TMSKASSKTGRKLDKLSGHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEIL 442 (1077)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~ 442 (1077)
++.++.. ......+..+.++++||+|+|+++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.
T Consensus 317 ~~~~~~~-~~~~~~~~~~~i~~~~v~~~y~~~--~~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~ 393 (585)
T TIGR01192 317 FQREEPA-DAPELPNVKGAVEFRHITFEFANS--SQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQIL 393 (585)
T ss_pred ccccCCc-cCCCCCCCCCeEEEEEEEEECCCC--CccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCCCCCCEEE
Confidence 4322111 101112234579999999999743 3589999999999999999999999999999999999999999999
Q ss_pred ECCeeCCCCCHHHHhhheeEEccCCCcccccHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCC
Q 001438 443 LDGNNIKGLDLKWLRQQIGLVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLS 522 (1077)
Q Consensus 443 ~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LS 522 (1077)
+||+++++++.+++|++++||||+|++|++|++|||.++.++.+++++.++++.+++.+++..+|+|++|.+|++|.+||
T Consensus 394 ~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LS 473 (585)
T TIGR01192 394 IDGIDINTVTRESLRKSIATVFQDAGLFNRSIRENIRLGREGATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLS 473 (585)
T ss_pred ECCEEhhhCCHHHHHhheEEEccCCccCcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccchhcCCCCCCC
Confidence 99999999999999999999999999999999999999988788999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEccCchhHhhcCEEEEEECCEEEEecCh
Q 001438 523 GGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRNADVIAVVQGRKIVKTGSH 602 (1077)
Q Consensus 523 gGqkqri~lARal~~~p~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~vtH~~~~~~~~d~i~~l~~G~i~~~g~~ 602 (1077)
||||||++||||++++|+++|||||||+||+++++.+.+.|++..+++|+|+||||++.++.||+|++|++|++++.|+|
T Consensus 474 gGq~qrl~lARall~~p~ililDEpts~LD~~~~~~i~~~l~~~~~~~tvI~isH~~~~~~~~d~i~~l~~G~i~~~g~~ 553 (585)
T TIGR01192 474 GGERQRLAIARAILKNAPILVLDEATSALDVETEARVKNAIDALRKNRTTFIIAHRLSTVRNADLVLFLDQGRLIEKGSF 553 (585)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEEcChHHHHcCCEEEEEECCEEEEECCH
Confidence 99999999999999999999999999999999999999999988889999999999999999999999999999999999
Q ss_pred hHHhcCCCchHHHHHHHHH
Q 001438 603 EELISNPNSAYAALVQLQE 621 (1077)
Q Consensus 603 ~~l~~~~~~~~~~~~~~~~ 621 (1077)
+|++++ ++.|+++++.+.
T Consensus 554 ~~l~~~-~~~y~~l~~~~~ 571 (585)
T TIGR01192 554 QELIQK-DGRFYKLLRRSG 571 (585)
T ss_pred HHHHHC-CChHHHHHHhCc
Confidence 999987 889999987653
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related. |
| >PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-77 Score=725.70 Aligned_cols=537 Identities=24% Similarity=0.344 Sum_probs=465.5
Q ss_pred HHHHHHHHHHHHhcccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhcc
Q 001438 75 FFIFFGKLINIIGLAYLFPKTASHKVAKYSLDFVYLSVAILFSSWIEVSCWMYTGERQAAKMRMAYLRSMLNQDISLFDT 154 (1077)
Q Consensus 75 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~f~~ 154 (1077)
.+++++.++|.+.... . . ......+...++++.++..++.+++.+.....+.++..++|.++|++++++|+++|++
T Consensus 14 ~p~~~~~iid~~~~~~--~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~ 89 (569)
T PRK10789 14 PPKVVGIIVDGVTEQH--M-T-TGQILMWIGTMVLIAVVVYLLRYVWRVLLFGASYQLAVELREDFYRQLSRQHPEFYLR 89 (569)
T ss_pred HHHHHHHHHHHhccCC--c-c-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHcC
Confidence 3357788888653211 0 0 1112223333444445556667777777778899999999999999999999999998
Q ss_pred CCChhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001438 155 EASTGEVISAITSDIIVVQDALSEKVGNFMHYISRFLGGFIIG-FARVWQISLVTLSIVPLIALAGGMYAYVTIGLIARV 233 (1077)
Q Consensus 155 ~~~~G~i~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~l~~l~~~pl~~~~~~~~~~~~~~~~~~~ 233 (1077)
.++|++++|+++|++.++..+...+..++..++.+++.++++ ++++|.+++++++++|++.++...+.+...+..++.
T Consensus 90 -~~~g~i~srl~~Dv~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~ 168 (569)
T PRK10789 90 -HRTGDLMARATNDVDRVVFAAGEGVLTLVDSLVMGCAVLIVMSTQISWQLTLLALLPMPVMAIMIKRYGDQLHERFKLA 168 (569)
T ss_pred -CCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 489999999999999999888777777777766666665555 579999999999999999888888888888888888
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001438 234 RKSYVKAGEIAEEVIGNVRTVQAFAGEDKAVKVYKEALSNTYKYGRKAGLAKGLGLGSMHCVLFLSWSLLVWYVSVVVHK 313 (1077)
Q Consensus 234 ~~~~~~~~~~~~E~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~ 313 (1077)
++..++..+.+.|.++|+++||+|++|+.+.++|.+..++..+...+.....+....+......++.++++++|++++.+
T Consensus 169 ~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~lv~~ 248 (569)
T PRK10789 169 QAAFSSLNDRTQESLTSIRMIKAFGLEDRQSALFAADAEDTGKKNMRVARIDARFDPTIYIAIGMANLLAIGGGSWMVVN 248 (569)
T ss_pred HHHHHHHHHHHHHHHcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 88889999999999999999999999999999999999988888888888777776666666666777788899999999
Q ss_pred cccCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhccCcccccccccCCCCCCCcccEEEEeEEEEcCC
Q 001438 314 HISNGGESFTTMLNVVIAGLSLGQAAPDITAFIRAKAAAYPIFEMIERDTMSKASSKTGRKLDKLSGHIEFKDVSFCYPS 393 (1077)
Q Consensus 314 ~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~ 393 (1077)
|.+|+|.++++..+......|+..+...+..+.+++++.+|+.++++.+++.+.. ....++.++.|+++|++|+|+.
T Consensus 249 g~lt~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~ll~~~~~~~~~---~~~~~~~~~~I~~~~v~~~y~~ 325 (569)
T PRK10789 249 GSLTLGQLTSFVMYLGLMIWPMLALAWMFNIVERGSAAYSRIRAMLAEAPVVKDG---SEPVPEGRGELDVNIRQFTYPQ 325 (569)
T ss_pred CCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCC---CCCCCCCCCcEEEEEEEEECCC
Confidence 9999999988877777777888888889999999999999999999865432211 1111223467999999999975
Q ss_pred CCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHHHhhheeEEccCCCccccc
Q 001438 394 RPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIGLVNQEPALFATT 473 (1077)
Q Consensus 394 ~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~t 473 (1077)
. +.++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.+||+++++++.+++|++++|+||+|++|++|
T Consensus 326 ~-~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~t 404 (569)
T PRK10789 326 T-DHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSRLAVVSQTPFLFSDT 404 (569)
T ss_pred C-CCccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEHhhCCHHHHHhheEEEccCCeecccc
Confidence 3 346899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCCCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHHhccCCCEEEEeCcCCCCCH
Q 001438 474 IRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDA 553 (1077)
Q Consensus 474 i~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~~~p~illlDEpts~lD~ 553 (1077)
++|||.++.++.++++++++++.+++.+++.++|+|++|.+|++|.+||||||||++||||++++|+|+|||||||+||+
T Consensus 405 i~~Ni~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~qRi~lARall~~~~illlDEpts~LD~ 484 (569)
T PRK10789 405 VANNIALGRPDATQQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARALLLNAEILILDDALSAVDG 484 (569)
T ss_pred HHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECccccCCH
Confidence 99999999888899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCeEEEEccCchhHhhcCEEEEEECCEEEEecChhHHhcCCCchHHHHHHHHH
Q 001438 554 ESENSVQEALDRVMVGRTTVVVAHRLSTIRNADVIAVVQGRKIVKTGSHEELISNPNSAYAALVQLQE 621 (1077)
Q Consensus 554 ~~~~~i~~~l~~~~~~~t~i~vtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~ 621 (1077)
++++.+.+.|++..+++|+|+||||++.++.||+|++|++|++++.|+|+|++++ ++.|+++++.|.
T Consensus 485 ~~~~~i~~~l~~~~~~~tii~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~-~~~y~~l~~~~~ 551 (569)
T PRK10789 485 RTEHQILHNLRQWGEGRTVIISAHRLSALTEASEILVMQHGHIAQRGNHDQLAQQ-SGWYRDMYRYQQ 551 (569)
T ss_pred HHHHHHHHHHHHHhCCCEEEEEecchhHHHcCCEEEEEeCCEEEEecCHHHHHHc-CChHHHHHHHhh
Confidence 9999999999988889999999999999999999999999999999999999986 789999987764
|
|
| >TIGR02868 CydC thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-77 Score=725.83 Aligned_cols=511 Identities=23% Similarity=0.285 Sum_probs=433.0
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHhcccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001438 60 LGSIGACVHGVSVPVFFIFFGKLINIIGLAYLFPKTASHKVAKYSLDFVYLSVAILFSSWIEVSCWMYTGERQAAKMRMA 139 (1077)
Q Consensus 60 ~~~~~~~~~~~~~p~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~ 139 (1077)
+.+++.++..+.....++++++++|...... . ..........++++.++..++.++..++..+.+.++..++|.+
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~ 91 (529)
T TIGR02868 17 VAILLGALALGSAVALLGVSAWLISRAAEMP----P-VLYLSVAAVAVRAFGIGRAVFRYLERLVGHDAALRSLGRLRVR 91 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc----h-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444455567889998753210 0 0000001111222344556677777788888899999999999
Q ss_pred HHHHHHhCCchhhccCCChhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001438 140 YLRSMLNQDISLFDTEASTGEVISAITSDIIVVQDALSEKVGNFMHYISRFLGGFIIGFARVWQISLVTLSIVPLIALAG 219 (1077)
Q Consensus 140 ~~~~ll~~~~~~f~~~~~~G~i~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~l~~~pl~~~~~ 219 (1077)
+|++++++|.++|++ .++|++++|+++|++.+++.+...+..++..+..+++.++++++++|.+++++++.+|++.++.
T Consensus 92 ~~~~ll~~~~~~~~~-~~~g~~~~~l~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~l~~~~~~~~~~ 170 (529)
T TIGR02868 92 VYDRLARLALAGRRR-FQTGDLLGRLGADVDALQDLYVRVIVPLVVALVVGSAAVAAIALLSVPAALVLAAGLLLAGFVA 170 (529)
T ss_pred HHHHhhccCcccccc-CChhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 999999999999998 4899999999999999999999888999999988899999999999999999888878776665
Q ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001438 220 GMYAY-VTIGLIARVRKSYVKAGEIAEEVIGNVRTVQAFAGEDKAVKVYKEALSNTYKYGRKAGLAKGLGLGSMHCVLFL 298 (1077)
Q Consensus 220 ~~~~~-~~~~~~~~~~~~~~~~~~~~~E~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (1077)
..+.+ ..++..++.++..++..+.+.|.++|+++||+|++|+.+.++|++..++..+...+...+.+...++..++..+
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (529)
T TIGR02868 171 PLVSLRAARAAEVALARLRSQLYQQLTDALDGAADLVAYGALDPALAQVEAADRELLAAERRAARATGLGAAAQLLAAGL 250 (529)
T ss_pred HHHHHHhcchHHHHHHHHHHHHHHHHHHHhccHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44443 34555666777788899999999999999999999999999999999999999888888888887777777777
Q ss_pred HHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhccCccccccccc-CCCCCC
Q 001438 299 SWSLLVWYVSVVVHKHISNGGESFTTMLNVVIAGLSLGQAAPDITAFIRAKAAAYPIFEMIERDTMSKASSKT-GRKLDK 377 (1077)
Q Consensus 299 ~~~~~~~~g~~~v~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~-~~~~~~ 377 (1077)
..++++++|++++..|.+++|.+.+++.+......++..+...+..+.+++++.+|+.++++.+++.+..... .....+
T Consensus 251 ~~~~~~~~g~~~~~~g~~t~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~~~~~~~~~ 330 (529)
T TIGR02868 251 AVLGALWAGGPAVADGTLAPATLAVLVLLPLAAFEAFAPLPAAAQALTRVRAAAERIEEVTGAKGPRPEGVVPAAGALGL 330 (529)
T ss_pred HHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCCCCCCCCcccCC
Confidence 7788889999999999999999888777766677788888888899999999999999999875542211111 111122
Q ss_pred CcccEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHHHh
Q 001438 378 LSGHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLR 457 (1077)
Q Consensus 378 ~~~~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r 457 (1077)
..+.|+++||+|+|+++ +++|+|+||++++||+++||||||||||||+++|+|+|+|++|+|.+||+|++++ .+++|
T Consensus 331 ~~~~I~~~~vsf~Y~~~--~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~i~g~~i~~~-~~~lr 407 (529)
T TIGR02868 331 GKPTLELRDLSFGYPGS--PPVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPLQGEVTLDGVSVSSL-QDELR 407 (529)
T ss_pred CCceEEEEEEEEecCCC--CceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhH-HHHHH
Confidence 34579999999999753 3599999999999999999999999999999999999999999999999999999 99999
Q ss_pred hheeEEccCCCcccccHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHHhcc
Q 001438 458 QQIGLVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVK 537 (1077)
Q Consensus 458 ~~i~~v~Q~~~lf~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~~ 537 (1077)
++|+||||+|++|++||+|||.+|.++.++++++++++.++++++++.+|+|+||.+||+|.+|||||||||+||||+++
T Consensus 408 ~~i~~V~Q~~~lF~~TI~eNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQrQRiaiARall~ 487 (529)
T TIGR02868 408 RRISVFAQDAHLFDTTVRDNLRLGRPDATDEELWAALERVGLADWLRSLPDGLDTVLGEGGARLSGGERQRLALARALLA 487 (529)
T ss_pred hheEEEccCcccccccHHHHHhccCCCCCHHHHHHHHHHcCCHHHHHhCcccccchhccccCcCCHHHHHHHHHHHHHhc
Confidence 99999999999999999999999998899999999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEccCc
Q 001438 538 NPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRL 579 (1077)
Q Consensus 538 ~p~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~vtH~~ 579 (1077)
+|+|||||||||+||+++++.|++.+.+..+++|+|+||||+
T Consensus 488 ~~~iliLDE~TSaLD~~te~~I~~~l~~~~~~~TvIiItHrl 529 (529)
T TIGR02868 488 DAPILLLDEPTEHLDAGTESELLEDLLAALSGKTVVVITHHL 529 (529)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEecCC
Confidence 999999999999999999999999999888899999999995
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. |
| >KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-78 Score=664.79 Aligned_cols=547 Identities=27% Similarity=0.351 Sum_probs=448.1
Q ss_pred HHHHhHHHHHHHHHHHHHHHHhcccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001438 66 CVHGVSVPVFFIFFGKLINIIGLAYLFPKTASHKVAKYSLDFVYLSVAILFSSWIEVSCWMYTGERQAAKMRMAYLRSML 145 (1077)
Q Consensus 66 ~~~~~~~p~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll 145 (1077)
..+.......+.+++.++|........+ ............|.+..++..++.-++.+.+.+..+++..+.-.++|++.+
T Consensus 40 ~~aK~l~v~vp~~~~~~id~l~~~~~~~-a~~~~~~~~~~~y~iar~~s~~F~el~~~vfa~v~q~~iR~~~~~vf~~~~ 118 (591)
T KOG0057|consen 40 LGAKILNVQVPFIFKLIIDGLNDADGNP-AVLSTITALLAGYGIARLGSSVFNELRNFVFAKVAQRVIRDSSSDVFRHLM 118 (591)
T ss_pred HhhhHhheehHHHHHHHHhhhhhcccCc-chhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334555555557788888753111111 111222334556667778888999999999999999999999999999999
Q ss_pred hCCchhhccCCChhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001438 146 NQDISLFDTEASTGEVISAITSDIIVVQDALSEKVGNFMHYISRFLGGFIIG-FARVWQISLVTLSIVPLIALAGGMYAY 224 (1077)
Q Consensus 146 ~~~~~~f~~~~~~G~i~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~l~~l~~~pl~~~~~~~~~~ 224 (1077)
+++.++|-+ ..+|++.+.+..-...|.+.+...+..++..++.+....... .-+.+..+++++..+...+.+......
T Consensus 119 ~ld~~~~~~-~~tG~l~~~idRgsraI~~vl~~~V~~i~p~~~~i~~v~~~l~~~~Ga~~~li~~~~v~~Y~a~Ti~~t~ 197 (591)
T KOG0057|consen 119 SLDLSFFLS-RGTGALNRIIDRGSRAISFVLSAMVFNIIPTLFEIALVSGILYYKFGAAFALITLGTVGAYAAFTIVVTR 197 (591)
T ss_pred hhhHHhhcC-CCcchHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHhheeEEeehh
Confidence 999999988 589999999999999999888776666666655444433222 224555566655555555555555666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001438 225 VTIGLIARVRKSYVKAGEIAEEVIGNVRTVQAFAGEDKAVKVYKEALSNTYKYGRKAGLAKGLGLGSMHCVLFLSWSLLV 304 (1077)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~E~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (1077)
+..+..++..++.+.++..+.|++.|-.+||.||.|+++.++|.....+..+...+.....++....-..+.....+.+.
T Consensus 198 ~Rn~fR~~~N~Adn~as~~~~dsL~Nye~VKsfNnE~~Ea~~y~~~l~~~~~~~~~~~~sl~~lnfgQ~~iFsv~~~~im 277 (591)
T KOG0057|consen 198 WRNRFRKAMNNADNSASRRAYDSLINYEIVKSFNNEEYEASRYDGSLKTYERAGLKYSSSLAFLNFGQKAIFSVALTFIM 277 (591)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHhhHHHHHHcccHHHHHHHHHHHHHHHHHhhhhHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 66667777788888888999999999999999999999999999999998888877766666554433333334445555
Q ss_pred HHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhccCcccccccccCCCCCCCcccEEE
Q 001438 305 WYVSVVVHKHISNGGESFTTMLNVVIAGLSLGQAAPDITAFIRAKAAAYPIFEMIERDTMSKASSKTGRKLDKLSGHIEF 384 (1077)
Q Consensus 305 ~~g~~~v~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~~~~~~~~i~~ 384 (1077)
+.+..-+.++.+|.|++........++..|+..+...+..+.++..-....+...+....+.+ ...+....++.|+|
T Consensus 278 ~l~~~gi~~~~mtvgdlv~~n~l~~qL~~~l~~Lg~vyr~~~q~l~Dm~~~~~l~~~~~~i~~---~~~~i~~~~~~I~F 354 (591)
T KOG0057|consen 278 VLGSNGIAAGKMTVGDLVMVNSLLFQLSLPLNFLGSVYRELRQALTDMRTLFILLEVDEDIQE---AALPIELFGGSIEF 354 (591)
T ss_pred HHHhhhhhhccccccchhhHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHhhhhhhhhhhh---ccCCcccCCCcEEE
Confidence 566666778889999987766667777888888888888888877777666655443222111 11122334577999
Q ss_pred EeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHHHhhheeEEc
Q 001438 385 KDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIGLVN 464 (1077)
Q Consensus 385 ~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~ 464 (1077)
+||+|+|++ ++++|+++||+|++||++||||+|||||||++++|+|+++ ++|+|++||+|+++++++.+|+.|||||
T Consensus 355 ~dV~f~y~~--k~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d-~sG~I~IdG~dik~~~~~SlR~~Ig~VP 431 (591)
T KOG0057|consen 355 DDVHFSYGP--KRKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFD-YSGSILIDGQDIKEVSLESLRQSIGVVP 431 (591)
T ss_pred EeeEEEeCC--CCceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhc-cCCcEEECCeeHhhhChHHhhhheeEeC
Confidence 999999974 4569999999999999999999999999999999999999 9999999999999999999999999999
Q ss_pred cCCCcccccHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHHhccCCCEEEE
Q 001438 465 QEPALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLL 544 (1077)
Q Consensus 465 Q~~~lf~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~~~p~illl 544 (1077)
||..||++||.+||.||++..+++++.++|+.++.+|.+.++|+||+|.+||+|..|||||||||+||||+++||+|+++
T Consensus 432 Qd~~LFndTIl~NI~YGn~sas~eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQrvslaRa~lKda~Il~~ 511 (591)
T KOG0057|consen 432 QDSVLFNDTILYNIKYGNPSASDEEVVEACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQRVSLARAFLKDAPILLL 511 (591)
T ss_pred CcccccchhHHHHhhcCCCCcCHHHHHHHHHHcCcHHHHHhccccchhhHhhcccccccchHHHHHHHHHHhcCCCeEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEccCchhHhhcCEEEEEECCEEEEecChhHHhcCCCchHHHHHHHHH
Q 001438 545 DEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRNADVIAVVQGRKIVKTGSHEELISNPNSAYAALVQLQE 621 (1077)
Q Consensus 545 DEpts~lD~~~~~~i~~~l~~~~~~~t~i~vtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~ 621 (1077)
|||||+||.++|+.+.+.+.+...+||+|+|.||++++++||+|+++++|++.|.|+|+||++ +.+.|++++..|.
T Consensus 512 DEaTS~LD~~TE~~i~~~i~~~~~~rTvI~IvH~l~ll~~~DkI~~l~nG~v~e~gth~ell~-~s~~~~~~w~~~~ 587 (591)
T KOG0057|consen 512 DEATSALDSETEREILDMIMDVMSGRTVIMIVHRLDLLKDFDKIIVLDNGTVKEYGTHSELLA-PSELYADLWTTQT 587 (591)
T ss_pred cCcccccchhhHHHHHHHHHHhcCCCeEEEEEecchhHhcCCEEEEEECCeeEEeccHHHHhh-hhhHHHHHhcccc
Confidence 999999999999999999999889999999999999999999999999999999999999999 5899999886653
|
|
| >TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-76 Score=725.86 Aligned_cols=555 Identities=35% Similarity=0.503 Sum_probs=474.8
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHhcccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001438 59 SLGSIGACVHGVSVPVFFIFFGKLINIIGLAYLFPKTASHKVAKYSLDFVYLSVAILFSSWIEVSCWMYTGERQAAKMRM 138 (1077)
Q Consensus 59 ~~~~~~~~~~~~~~p~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~ 138 (1077)
.+.+++.++.+++....+++++.++|...... . .........+++++.++..++.+++.+.....+.++..++|.
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~iid~~~~~~----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~ 95 (576)
T TIGR02204 21 LAALVALLITAAATLSLPYAVRLMIDHGFSKD----S-SGLLNRYFAFLLVVALVLALGTAARFYLVTWLGERVVADIRR 95 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHhhcccc----c-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555555566667888888743211 1 111122223333334445566677777778889999999999
Q ss_pred HHHHHHHhCCchhhccCCChhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001438 139 AYLRSMLNQDISLFDTEASTGEVISAITSDIIVVQDALSEKVGNFMHYISRFLGGFIIGFARVWQISLVTLSIVPLIALA 218 (1077)
Q Consensus 139 ~~~~~ll~~~~~~f~~~~~~G~i~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~l~~~pl~~~~ 218 (1077)
.+++++++.|.++|++ .+.|++++|+++|++.+++.+...+..++..+..+++.+++++.++|.+++++++.+|+.++.
T Consensus 96 ~l~~~l~~~~~~~~~~-~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~l~~~~ 174 (576)
T TIGR02204 96 AVFAHLISLSPSFFDK-NRSGEVVSRLTTDTTLLQSVIGSSLSMALRNALMCIGGLIMMFITSPKLTSLVLLAVPLVLLP 174 (576)
T ss_pred HHHHHHHcCCHHHHcc-CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 9999999999999998 489999999999999999999888888888998899999999999999999988888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001438 219 GGMYAYVTIGLIARVRKSYVKAGEIAEEVIGNVRTVQAFAGEDKAVKVYKEALSNTYKYGRKAGLAKGLGLGSMHCVLFL 298 (1077)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (1077)
..++.+..++..+..++..++..+.+.|.++|+++||.|+.|+.+.+++++..++..+...+.....+....+..++..+
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (576)
T TIGR02204 175 ILLFGRRVRKLSRESQDRIADAGSYAGETLGAIRTVQAFGHEDAERSRFGGAVEKAYEAARQRIRTRALLTAIVIVLVFG 254 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888888899999999999999999999999999999999999988887777777666665555555556
Q ss_pred HHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhccCcccccccccCCCCCCC
Q 001438 299 SWSLLVWYVSVVVHKHISNGGESFTTMLNVVIAGLSLGQAAPDITAFIRAKAAAYPIFEMIERDTMSKASSKTGRKLDKL 378 (1077)
Q Consensus 299 ~~~~~~~~g~~~v~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~~~~~ 378 (1077)
..++++++|++++..|.+++|.++++..+......|+..+...+..+.+++.+.+|+.++++.+++.+..........+.
T Consensus 255 ~~~~~~~~g~~~v~~g~lt~g~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~~~~~~~~~ 334 (576)
T TIGR02204 255 AIVGVLWVGAHDVIAGKMSAGTLGQFVFYAVMVAGSIGTLSEVWGELQRAAGAAERLIELLQAEPDIKAPAHPKTLPVPL 334 (576)
T ss_pred HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCCCCCccCCcCC
Confidence 66777888999999999999998888777777788899999999999999999999999998654322111111111122
Q ss_pred cccEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHHHhh
Q 001438 379 SGHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQ 458 (1077)
Q Consensus 379 ~~~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~ 458 (1077)
.+.|+++||+|+|+++.++++|+|+||+++|||+++|+||||||||||+++|+|+++|++|+|.+||.++++++.+++|+
T Consensus 335 ~~~i~~~~v~f~y~~~~~~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~~G~I~i~g~~i~~~~~~~~~~ 414 (576)
T TIGR02204 335 RGEIEFEQVNFAYPARPDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDLRQLDPAELRA 414 (576)
T ss_pred CceEEEEEEEEECCCCCCCccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHH
Confidence 45799999999998643357999999999999999999999999999999999999999999999999999999999999
Q ss_pred heeEEccCCCcccccHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHHhccC
Q 001438 459 QIGLVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKN 538 (1077)
Q Consensus 459 ~i~~v~Q~~~lf~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~~~ 538 (1077)
+++|+||+|++|++|++|||.++.++.++++++++++.+++.++++.+|+|++|.+||+|.+||||||||++||||++++
T Consensus 415 ~i~~~~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LSgGq~Qrl~laRal~~~ 494 (576)
T TIGR02204 415 RMALVPQDPVLFAASVMENIRYGRPDATDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQRQRIAIARAILKD 494 (576)
T ss_pred hceEEccCCccccccHHHHHhcCCCCCCHHHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcCCHHHHHHHHHHHHHHhC
Confidence 99999999999999999999999887889999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEccCchhHhhcCEEEEEECCEEEEecChhHHhcCCCchHHHHHH
Q 001438 539 PSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRNADVIAVVQGRKIVKTGSHEELISNPNSAYAALVQ 618 (1077)
Q Consensus 539 p~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~vtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~ 618 (1077)
|+++|||||||+||+++++.+.+.|++..+++|+|+||||++.++.||+|++|++|++++.|+|++++++ ++.|+++++
T Consensus 495 ~~ililDEpts~lD~~~~~~i~~~l~~~~~~~t~IiitH~~~~~~~~d~vi~l~~g~~~~~g~~~~l~~~-~~~~~~l~~ 573 (576)
T TIGR02204 495 APILLLDEATSALDAESEQLVQQALETLMKGRTTLIIAHRLATVLKADRIVVMDQGRIVAQGTHAELIAK-GGLYARLAR 573 (576)
T ss_pred CCeEEEeCcccccCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEEEEECCEEEeeecHHHHHHc-CChHHHHHh
Confidence 9999999999999999999999999998889999999999999999999999999999999999999886 888988876
Q ss_pred HH
Q 001438 619 LQ 620 (1077)
Q Consensus 619 ~~ 620 (1077)
.|
T Consensus 574 ~~ 575 (576)
T TIGR02204 574 LQ 575 (576)
T ss_pred hc
Confidence 43
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. |
| >KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-79 Score=662.01 Aligned_cols=550 Identities=28% Similarity=0.359 Sum_probs=441.4
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHhcccCCchhhhh-HHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001438 65 ACVHGVSVPVFFIFFGKLINIIGLAYLFPKTASH-KVAKYSLDFVYL--SVAILFSSWIEVSCWMYTGERQAAKMRMAYL 141 (1077)
Q Consensus 65 ~~~~~~~~p~~~~~~~~~i~~~~~~~~~~~~~~~-~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~ 141 (1077)
.++.-+.....+.+.+++.|.+.. +..... .+..+....++- +-+..+++.++.++|....+-..+++-..+|
T Consensus 224 l~i~rli~~~~pi~~k~iv~~lta----p~~~~~~~~~~~v~L~flqg~gtgsG~~~nlRtfLWi~VqQyttR~ie~~lf 299 (790)
T KOG0056|consen 224 LIIGRLINVSLPILSKWIVDELTA----PDTFQYSLVFLYVFLKFLQGGGTGSGFLNNLRTFLWIPVQQYTTREIETELF 299 (790)
T ss_pred HHHHHHHhhhhHHhHHHHHHhhcC----cchhhHHHHHHHHHHHHHhcCCccccchhhhheeEEEEhhHhHHHHHHHHHH
Confidence 333344444555677888887642 211111 111111111111 2234577888889999999999999999999
Q ss_pred HHHHhCCchhhccCCChhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Q 001438 142 RSMLNQDISLFDTEASTGEVISAITSDIIVVQDALSEKVGNFMHYISRFLGGFIIG-FARVWQISLVTLSIVPLIALAGG 220 (1077)
Q Consensus 142 ~~ll~~~~~~f~~~~~~G~i~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~l~~l~~~pl~~~~~~ 220 (1077)
+|+..++++|+-+ +.+||++.-+....+.+. ++...+.++...+.-+.++++-. ..++|+.++++++++.+......
T Consensus 300 rHlh~LSlrwHL~-rrtGeVLrvmdrGtssvt-ll~yvVF~i~PtllDl~va~vYF~~~Fn~wFgLIVfl~m~lY~~~Ti 377 (790)
T KOG0056|consen 300 RHLHNLSLRWHLN-RRTGEVLRVMDRGTSSVT-LLEYVVFQIGPTLLDLGVAMVYFFIKFNIWFGLIVFLMMLLYCYVTI 377 (790)
T ss_pred HHHHhhceeeeec-ccccceeehhccCcchhh-HHHHHHhhcccHHHHhhhhhhhhhhhHhHHHHHHHHHHHHHHhheee
Confidence 9999999999988 489999888877666555 43333444444444444444332 34689999888777766655554
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001438 221 MYAYVTIGLIARVRKSYVKAGEIAEEVIGNVRTVQAFAGEDKAVKVYKEALSNTYKYGRKAGLAKGLGLGSMHCVLFLSW 300 (1077)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (1077)
....+.-+..++....-.+......+++-+..|||-||+|+++.++|.+...++.+..+|...-..+....-..+..+..
T Consensus 378 ~iTeWRTk~rR~Mn~~~nesrAr~vDsllNFETVKyy~Ae~yEverYreAil~Yqk~E~ks~~sLnfLN~~Qn~Ii~lgl 457 (790)
T KOG0056|consen 378 KITEWRTKARRKMNNSWNESRARQVDSLLNFETVKYYNAEDYEVERYREAILKYQKQEWKSLASLNFLNIVQNGIIGLGL 457 (790)
T ss_pred eeehhhHHHHHHhhhhhhhhhhhhhhhhhcchhhhccCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHH
Confidence 44444444444444444444456779999999999999999999999999999888777754433333333233333333
Q ss_pred HHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhccCcccccccccCCCCCCCcc
Q 001438 301 SLLVWYVSVVVHKHISNGGESFTTMLNVVIAGLSLGQAAPDITAFIRAKAAAYPIFEMIERDTMSKASSKTGRKLDKLSG 380 (1077)
Q Consensus 301 ~~~~~~g~~~v~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~~~~~~~ 380 (1077)
+....+.+|.+..+.+|+|+..-+..+++.+.+|+..+...+..+++..+-.++++++++++++..+.+ ..++....+|
T Consensus 458 l~gsll~aY~Vt~q~ltVGDfVlf~TYliqLy~PLN~FGT~YR~iQ~nfiDmEnmfdllkee~eVvd~P-~a~pl~~~~G 536 (790)
T KOG0056|consen 458 LAGSLLCAYRVTEQTLTVGDFVLFLTYLIQLYMPLNFFGTYYRSIQKNFIDMENMFDLLKEEPEVVDLP-GAPPLKVTQG 536 (790)
T ss_pred hhhhheeeeeeeeccccccceehHHHHHHHHhCchHHHHHHHHHHHHhhhhHHHHHHHhhcCchhhcCC-CCCCccccCC
Confidence 333444556677888999997666667888889999999999999999999999999999877654322 2223344568
Q ss_pred cEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHHHhhhe
Q 001438 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQI 460 (1077)
Q Consensus 381 ~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i 460 (1077)
.|+|+||+|.|++ ++++|+||||++.||+.+|+|||||+||||++++|.|+++.++|+|.+||+||++....++|++|
T Consensus 537 ~i~fsnvtF~Y~p--~k~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRffdv~sGsI~iDgqdIrnvt~~SLRs~I 614 (790)
T KOG0056|consen 537 KIEFSNVTFAYDP--GKPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFDVNSGSITIDGQDIRNVTQSSLRSSI 614 (790)
T ss_pred eEEEEEeEEecCC--CCceeecceEEecCCcEEEEECCCCCchhHHHHHHHHHhhccCceEEEcCchHHHHHHHHHHHhc
Confidence 9999999999974 56899999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEccCCCcccccHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHHhccCCC
Q 001438 461 GLVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPS 540 (1077)
Q Consensus 461 ~~v~Q~~~lf~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~~~p~ 540 (1077)
|.||||..|||+||..||.|+++.+++|++.+|++.++.||.|..+|+||+|.|||+|-.||||||||+||||+++++|.
T Consensus 615 GVVPQDtvLFNdTI~yNIryak~~AsneevyaAAkAA~IHdrIl~fPegY~t~VGERGLkLSGGEKQRVAiARtiLK~P~ 694 (790)
T KOG0056|consen 615 GVVPQDTVLFNDTILYNIRYAKPSASNEEVYAAAKAAQIHDRILQFPEGYNTRVGERGLKLSGGEKQRVAIARTILKAPS 694 (790)
T ss_pred CcccCcceeecceeeeheeecCCCCChHHHHHHHHHhhHHHHHhcCchhhhhhhhhcccccCCcchhhHHHHHHHhcCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEccCchhHhhcCEEEEEECCEEEEecChhHHhcCCCchHHHHHHHH
Q 001438 541 ILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRNADVIAVVQGRKIVKTGSHEELISNPNSAYAALVQLQ 620 (1077)
Q Consensus 541 illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~vtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~ 620 (1077)
|++|||+|||||..+|+.|+.++.++..++|.|+|+||++++-+||.|+|+++|+|+|.|+|+||+.+++|.|+++++.|
T Consensus 695 iIlLDEATSALDT~tER~IQaaL~rlca~RTtIVvAHRLSTivnAD~ILvi~~G~IvErG~HeeLl~rdgG~Ya~MWq~q 774 (790)
T KOG0056|consen 695 IILLDEATSALDTNTERAIQAALARLCANRTTIVVAHRLSTIVNADLILVISNGRIVERGRHEELLKRDGGAYADMWQAQ 774 (790)
T ss_pred EEEEcchhhhcCCccHHHHHHHHHHHhcCCceEEEeeeehheecccEEEEEeCCeEeecCcHHHHHhccCCcHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999998899999999877
Q ss_pred HHh
Q 001438 621 EAA 623 (1077)
Q Consensus 621 ~~~ 623 (1077)
+..
T Consensus 775 qa~ 777 (790)
T KOG0056|consen 775 QAM 777 (790)
T ss_pred Hhc
Confidence 654
|
|
| >TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-76 Score=781.70 Aligned_cols=510 Identities=20% Similarity=0.271 Sum_probs=434.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhccCCChhHHHHHHHhHHHHHHHHHHHHHHH
Q 001438 103 YSLDFVYLSVAILFSSWIEVSCWMYTGERQAAKMRMAYLRSMLNQDISLFDTEASTGEVISAITSDIIVVQDALSEKVGN 182 (1077)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~f~~~~~~G~i~~r~~~D~~~i~~~~~~~~~~ 182 (1077)
+..+|++++++..++.++..+++.+.+.+...++|.++++++++.|++|||+ .++|+++||+++|++.+++.+...+..
T Consensus 1007 ~~~iy~~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ff~~-~~~G~ilnR~s~Di~~id~~l~~~~~~ 1085 (1522)
T TIGR00957 1007 RLSVYGALGILQGFAVFGYSMAVSIGGIQASRVLHQDLLHNKLRSPMSFFER-TPSGNLVNRFSKELDTVDSMIPPVIKM 1085 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhHhcc-CChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345666677777777777788888899999999999999999999999998 499999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHH
Q 001438 183 FMHYISRFLGGFIIGFARVWQISLVTLSIVPLIALAGGMYAYVTIGLIARVRKSYVKAGEIAEEVIGNVRTVQAFAGEDK 262 (1077)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~l~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~Ik~~~~e~~ 262 (1077)
++..++.+++.++++++.+|.++++++.++++.+++..++.+..+...+...+..+...+.+.|+++|+++||+|++|++
T Consensus 1086 ~~~~~~~~i~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~s~l~~~~~E~l~Gi~tIraf~~~~~ 1165 (1522)
T TIGR00957 1086 FMGSLFNVIGALIVILLATPIAAVIIPPLGLLYFFVQRFYVASSRQLKRLESVSRSPVYSHFNETLLGVSVIRAFEEQER 1165 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCCcHHHHHhhhHHH
Confidence 99999999999888888888776665555555555555555556665566666777888999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcccCHHHHHHHHHHHHHHHHHHHHhHHH
Q 001438 263 AVKVYKEALSNTYKYGRKAGLAKGLGLGSMHCVLFLSWSLLVWYVSVVVH-KHISNGGESFTTMLNVVIAGLSLGQAAPD 341 (1077)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~-~~~~~~g~~~~~~~~~~~~~~~l~~~~~~ 341 (1077)
|.+++.+..+...+..........+......++.. .++++.+...+. .+.+++|.+..++.+......++..+...
T Consensus 1166 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~v~~~~~~~~g~l~~~l~~~~~~~~~l~~l~~~ 1242 (1522)
T TIGR00957 1166 FIHQSDLKVDENQKAYYPSIVANRWLAVRLECVGN---CIVLFAALFAVISRHSLSAGLVGLSVSYSLQVTFYLNWLVRM 1242 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999988887777655544444433333222221 233334444443 57789999877777777777888888889
Q ss_pred HHHHHHHHHHHHHHHHHhccCcccccc--cccCCCCCCCcccEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCC
Q 001438 342 ITAFIRAKAAAYPIFEMIERDTMSKAS--SKTGRKLDKLSGHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGS 419 (1077)
Q Consensus 342 ~~~~~~~~~s~~ri~~~l~~~~~~~~~--~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~ 419 (1077)
+..+..+.+|.+|+.++++.+++.+.. ....+..++.+|.|+|+||+|+|+++. +++|+|+||+|++||++||||+|
T Consensus 1243 ~~~~e~~~~s~eRi~~~~~~~~e~~~~~~~~~~~~~wp~~g~I~f~nVsf~Y~~~~-~~vL~~is~~I~~GekiaIVGrT 1321 (1522)
T TIGR00957 1243 SSEMETNIVAVERLKEYSETEKEAPWQIQETAPPSGWPPRGRVEFRNYCLRYREDL-DLVLRHINVTIHGGEKVGIVGRT 1321 (1522)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCccccccCCCCCCCCCCCCcEEEEEEEEEeCCCC-cccccceeEEEcCCCEEEEECCC
Confidence 999999999999999999766543211 111112245678999999999997543 46999999999999999999999
Q ss_pred CCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHHHhhheeEEccCCCcccccHHHHHhcCCCCCCHHHHHHHHHHHhH
Q 001438 420 GSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIGLVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEA 499 (1077)
Q Consensus 420 GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~~ni~~~~~~~~~~~~~~~~~~~~~ 499 (1077)
|||||||+++|+|+|+|++|+|.+||+|+++++.+++|++|+||||||.+|+|||||||... .+++++++++|++.+++
T Consensus 1322 GsGKSTL~~lL~rl~~~~~G~I~IdG~dI~~i~~~~LR~~i~iVpQdp~LF~gTIr~NLdp~-~~~sdeei~~al~~a~l 1400 (1522)
T TIGR00957 1322 GAGKSSLTLGLFRINESAEGEIIIDGLNIAKIGLHDLRFKITIIPQDPVLFSGSLRMNLDPF-SQYSDEEVWWALELAHL 1400 (1522)
T ss_pred CCCHHHHHHHHhcCccCCCCeEEECCEEccccCHHHHHhcCeEECCCCcccCccHHHHcCcc-cCCCHHHHHHHHHHcCc
Confidence 99999999999999999999999999999999999999999999999999999999999832 25789999999999999
Q ss_pred HHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEccCc
Q 001438 500 MSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRL 579 (1077)
Q Consensus 500 ~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~~~p~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~vtH~~ 579 (1077)
++++.++|+|+||.+||+|.+||||||||+|||||++++|+|||||||||+||.++++.|++.|++..+++|+|+||||+
T Consensus 1401 ~~~I~~lp~GLdt~v~e~G~~LSgGQrQrl~LARALLr~~~ILiLDEaTSalD~~Te~~Iq~~l~~~~~~~TvI~IAHRl 1480 (1522)
T TIGR00957 1401 KTFVSALPDKLDHECAEGGENLSVGQRQLVCLARALLRKTKILVLDEATAAVDLETDNLIQSTIRTQFEDCTVLTIAHRL 1480 (1522)
T ss_pred HHHHhhCccCCCceecCCCCcCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999988999999999999
Q ss_pred hhHhhcCEEEEEECCEEEEecChhHHhcCCCchHHHHHHH
Q 001438 580 STIRNADVIAVVQGRKIVKTGSHEELISNPNSAYAALVQL 619 (1077)
Q Consensus 580 ~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~ 619 (1077)
+++.+||||+||++|+|+|.|+|+||+++ ++.|+++++.
T Consensus 1481 ~ti~~~DrIlVld~G~IvE~G~~~eLl~~-~~~f~~l~~~ 1519 (1522)
T TIGR00957 1481 NTIMDYTRVIVLDKGEVAEFGAPSNLLQQ-RGIFYSMAKD 1519 (1522)
T ss_pred HHHHhCCEEEEEECCEEEEECCHHHHHhC-CCHHHHHHHH
Confidence 99999999999999999999999999987 7999998865
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. |
| >COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-75 Score=645.59 Aligned_cols=555 Identities=22% Similarity=0.287 Sum_probs=446.0
Q ss_pred hHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001438 54 DYILMSLGSIGACVHGVSVPVFFIFFGKLINIIGLAYLFPKTASHKVAKYSLDFVYLSVAILFSSWIEVSCWMYTGERQA 133 (1077)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (1077)
++..+.++++++++..++...+....|++|..-... +....-.+..-....=.++++..+..|...........++.
T Consensus 14 ~~~~l~Lgi~l~~~t~lasigLl~lSGwfisasAia---g~~~~f~~~~p~a~VR~~aI~Rt~~RY~ERlvsH~AtfrvL 90 (573)
T COG4987 14 HKFGLLLGIVLAILTLLASIGLLTLSGWFISASAIA---GLAYIFNVMLPSAGVRGLAILRTAARYVERLVSHDATFRVL 90 (573)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhc---cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 344556666666666555555556778988763221 10000000001111223445555666666666666777888
Q ss_pred HHHHHHHHHHHHhCCchhhccCCChhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001438 134 AKMRMAYLRSMLNQDISLFDTEASTGEVISAITSDIIVVQDALSEKVGNFMHYISRFLGGFIIGFARVWQISLVTLSIVP 213 (1077)
Q Consensus 134 ~~lr~~~~~~ll~~~~~~f~~~~~~G~i~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~l~~~p 213 (1077)
.++|.++|+++...+.....+ .++||++||+..|++.+|+.+-..+.+.+..+..+.+..+..-+++|.+++.....+.
T Consensus 91 ~~lRv~~f~kl~p~sp~~~~r-~r~gdLL~RLvaDVd~Ld~lyLRvi~P~~~a~~~~~~~~i~L~f~~~~~Alll~~~ll 169 (573)
T COG4987 91 SALRVRLFEKLEPLSPALLLR-YRSGDLLNRLVADVDALDNLYLRVIAPAVVALVLIAVVTIGLSFFSIPLALLLGLILL 169 (573)
T ss_pred HHHHHHHHHhhccCChHHHHh-cChHhHHHHHHhhHHHHhhHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 999999999999999998887 5899999999999999999999888888888877777666666788887665444433
Q ss_pred HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001438 214 LI-ALAGGMYAYVTIGLIARVRKSYVKAGEIAEEVIGNVRTVQAFAGEDKAVKVYKEALSNTYKYGRKAGLAKGLGLGSM 292 (1077)
Q Consensus 214 l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (1077)
+. +++-.++.+..++..++..+..+...+.+.|.+.|....+.||.++.+.+.+++....+.+...|.+++.++.....
T Consensus 170 ~~lli~P~~~~~~~~~~~~~l~~~r~~lr~~~td~v~G~~EL~~~g~~~~~~~~l~~~e~~~~~~q~k~~~~~~~~~a~~ 249 (573)
T COG4987 170 LLLLIIPTLFYRAGRKFGAHLAQGRAALRSQFTDWVQGQAELLIFGAEDAYRTALEATEASWLKAQRKQARFTGLSDAIL 249 (573)
T ss_pred HHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33 33344456666666777777777888899999999999999999999999999999999999999999999888877
Q ss_pred HHHHHHHHH-HHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHHhH-HHHHHHHHHHHHHHHHHHHhccCcccccccc
Q 001438 293 HCVLFLSWS-LLVWYVSVVVHKHISNGGESFTTMLNVVIAGLSLGQAA-PDITAFIRAKAAAYPIFEMIERDTMSKASSK 370 (1077)
Q Consensus 293 ~~~~~~~~~-~~~~~g~~~v~~~~~~~g~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~ 370 (1077)
.++..+..+ .++|.+. .+..|..+.......++.+.....++..+. ..+....+...|+.|+.++++.+++...+.+
T Consensus 250 ~l~~g~~v~~~l~w~a~-~~~~G~~~~~~aa~~ll~~f~~~eaf~~L~~~A~~~lgq~~~Sa~Rl~~i~~q~~e~~~~~~ 328 (573)
T COG4987 250 LLIAGLLVIGLLLWMAA-QVGAGALAQPGAALALLVIFAALEAFEPLAPGAFQHLGQVIASARRLNDILDQKPEVTFPDE 328 (573)
T ss_pred HHHHHHHHHHHHHHHHh-cCcCCCcchhHHHHHHHHHHHHHHHHhhhcchhHHHhhHHHHHHHHHhhhccCCcccCCCcc
Confidence 777666655 4455543 344455553222222222222233333333 4556778899999999999988766433211
Q ss_pred cCCCCCCCcccEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCC
Q 001438 371 TGRKLDKLSGHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKG 450 (1077)
Q Consensus 371 ~~~~~~~~~~~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~ 450 (1077)
.....+..++++||+|+||++ +.++|+|+||++++||++||+|+||||||||+++|.|.++|++|+|.++|.++..
T Consensus 329 ---~~~~~~~~l~~~~vsF~y~~~-~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~~~G~i~~~g~~~~~ 404 (573)
T COG4987 329 ---QTATTGQALELRNVSFTYPGQ-QTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSITLNGVEIAS 404 (573)
T ss_pred ---ccCCccceeeeccceeecCCC-ccchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccCCCCCeeeECCcChhh
Confidence 111112279999999999976 4579999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHhhheeEEccCCCcccccHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHH
Q 001438 451 LDLKWLRQQIGLVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIA 530 (1077)
Q Consensus 451 ~~~~~~r~~i~~v~Q~~~lf~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~ 530 (1077)
++.+.+|+.|++++|.+++|++|+|||+.+++|++++|+++++++.+++.+++++.|+|++|.+||.|..||||||||++
T Consensus 405 l~~~~~~e~i~vl~Qr~hlF~~Tlr~NL~lA~~~AsDEel~~aL~qvgL~~l~~~~p~gl~t~lge~G~~LSGGE~rRLA 484 (573)
T COG4987 405 LDEQALRETISVLTQRVHLFSGTLRDNLRLANPDASDEELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRRLA 484 (573)
T ss_pred CChhhHHHHHhhhccchHHHHHHHHHHHhhcCCCCCHHHHHHHHHHcCHHHHHHhChhhhhchhccCCCcCCchHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEccCchhHhhcCEEEEEECCEEEEecChhHHhcCCC
Q 001438 531 ISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRNADVIAVVQGRKIVKTGSHEELISNPN 610 (1077)
Q Consensus 531 lARal~~~p~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~vtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~ 610 (1077)
|||++++|++++||||||.+||+.||+++++.|.+..+|||+|+||||+..++.||||+||++|+++|+|+|.+|+.+ +
T Consensus 485 lAR~LL~dapl~lLDEPTegLD~~TE~~vL~ll~~~~~~kTll~vTHrL~~le~~drIivl~~Gkiie~G~~~~Ll~~-~ 563 (573)
T COG4987 485 LARALLHDAPLWLLDEPTEGLDPITERQVLALLFEHAEGKTLLMVTHRLRGLERMDRIIVLDNGKIIEEGTHAELLAN-N 563 (573)
T ss_pred HHHHHHcCCCeEEecCCcccCChhhHHHHHHHHHHHhcCCeEEEEecccccHhhcCEEEEEECCeeeecCCHHhhhcc-c
Confidence 999999999999999999999999999999999998899999999999999999999999999999999999999996 8
Q ss_pred chHHHHHH
Q 001438 611 SAYAALVQ 618 (1077)
Q Consensus 611 ~~~~~~~~ 618 (1077)
+.|+++++
T Consensus 564 g~~~~l~q 571 (573)
T COG4987 564 GRYKRLYQ 571 (573)
T ss_pred cHHHHHhc
Confidence 99998875
|
|
| >TIGR02857 CydD thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-75 Score=706.48 Aligned_cols=524 Identities=23% Similarity=0.300 Sum_probs=449.3
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHhcccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001438 59 SLGSIGACVHGVSVPVFFIFFGKLINIIGLAYLFPKTASHKVAKYSLDFVYLSVAILFSSWIEVSCWMYTGERQAAKMRM 138 (1077)
Q Consensus 59 ~~~~~~~~~~~~~~p~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~ 138 (1077)
.++++++++.++..+..++++++++|.+.... ........+...+++++++..++.+++.+...+.+.++..++|.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~iid~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~ 81 (529)
T TIGR02857 6 ALLGLLGALGALLIIAQAWLLARVIDGLISAG----EPLAELLPALGALALAVLLRALLGWLGERAAARAAAAVKSQLRE 81 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC----CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555566666677778899999763111 01122233444455556667788888888888999999999999
Q ss_pred HHHHHHHhCCchhhccCCChhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001438 139 AYLRSMLNQDISLFDTEASTGEVISAITSDIIVVQDALSEKVGNFMHYISRFLGGFIIGFARVWQISLVTLSIVPLIALA 218 (1077)
Q Consensus 139 ~~~~~ll~~~~~~f~~~~~~G~i~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~l~~~pl~~~~ 218 (1077)
++|+++++.|..+|++ .++|++++|+++|++.+++.+...+..++..+..+++.+++++.++|.+++++++.+|++.++
T Consensus 82 ~l~~~l~~~~~~~~~~-~~~g~~~~~l~~di~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~l~~~~l~~~~ 160 (529)
T TIGR02857 82 RLLAAVAALGPGWLQG-RPSGELATLALEGVEALDGYFARYLPQLVLAVIIPLAILAAVFPADWISGLILLLTAPLIPIF 160 (529)
T ss_pred HHHHHHHhCCchhhcc-CChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 9999999999999998 599999999999999999999888888888888888888899999999999998888888877
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001438 219 GGMYAYVTIGLIARVRKSYVKAGEIAEEVIGNVRTVQAFAGEDKAVKVYKEALSNTYKYGRKAGLAKGLGLGSMHCVLFL 298 (1077)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (1077)
...+.++.++..++.++..++..+.+.|.++|+++||+|++|+.+.++|++..++..+...+..+..+....+..++..+
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (529)
T TIGR02857 161 MILIGWAAQAAARKQWAALSRLSGHFLDRLRGLPTLKLFGRAKAQAAAIARSSEEYRERTMRVLRIAFLSSAVLELFATL 240 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77778888888888888889999999999999999999999999999999998888887777777666665555555555
Q ss_pred HHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhccCcccccccccCCCCCCC
Q 001438 299 SWSLLVWYVSVVVHKHISNGGESFTTMLNVVIAGLSLGQAAPDITAFIRAKAAAYPIFEMIERDTMSKASSKTGRKLDKL 378 (1077)
Q Consensus 299 ~~~~~~~~g~~~v~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~~~~~ 378 (1077)
..++++.++++.+..|.++.|.+++++.+......|+..+...+..+.+++.+.+|+.++++.+++..+. .....+.
T Consensus 241 ~~~~~~~~~~~~~~~g~~t~g~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~ll~~~~~~~~~---~~~~~~~ 317 (529)
T TIGR02857 241 SVALVAVYIGFRLLAGDLDLATGLFVLLLAPEFYLPLRQLGADYHARADGVAAAEALFAVLDAPRPLAGK---APVTAAP 317 (529)
T ss_pred HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCC---cCCCCCC
Confidence 5555555566666688999999888777766777788888888999999999999999999754321111 1111112
Q ss_pred cccEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHHHhh
Q 001438 379 SGHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQ 458 (1077)
Q Consensus 379 ~~~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~ 458 (1077)
.+.|+++||+|+|+++ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||+|+++++.+++|+
T Consensus 318 ~~~i~~~~v~f~y~~~-~~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~~~g~~i~~~~~~~lr~ 396 (529)
T TIGR02857 318 APSLEFSGLSVAYPGR-RAPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSWRD 396 (529)
T ss_pred CCeEEEEEEEEECCCC-CcccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEehhhCCHHHHHh
Confidence 3579999999999854 246999999999999999999999999999999999999999999999999999999999999
Q ss_pred heeEEccCCCcccccHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHHhccC
Q 001438 459 QIGLVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKN 538 (1077)
Q Consensus 459 ~i~~v~Q~~~lf~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~~~ 538 (1077)
+++||||+|++|++|++|||.++.++.+++++.++++.++++++++++|+|+||.+||+|.+||||||||++||||++++
T Consensus 397 ~i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qri~laRal~~~ 476 (529)
T TIGR02857 397 QIAWVPQHPFLFAGTIAENIRLARPDASDAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLALARAFLRD 476 (529)
T ss_pred heEEEcCCCcccCcCHHHHHhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhccccccCCHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999888889999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEccCchhHhhcCEEEEE
Q 001438 539 PSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRNADVIAVV 591 (1077)
Q Consensus 539 p~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~vtH~~~~~~~~d~i~~l 591 (1077)
|+|+|||||||+||+++++.+.+.+++..+++|+|+||||+++++.||+|++|
T Consensus 477 ~~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~~l 529 (529)
T TIGR02857 477 APLLLLDEPTAHLDAETEALVTEALRALAQGRTVLLVTHRLALAERADRIVVL 529 (529)
T ss_pred CCEEEEeCcccccCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHhCCEEEeC
Confidence 99999999999999999999999999988899999999999999999999985
|
Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD |
| >PLN03130 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-75 Score=768.74 Aligned_cols=509 Identities=21% Similarity=0.269 Sum_probs=404.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhccCCChhHHHHHHHhHHHHHHHHHHHHHHH
Q 001438 103 YSLDFVYLSVAILFSSWIEVSCWMYTGERQAAKMRMAYLRSMLNQDISLFDTEASTGEVISAITSDIIVVQDALSEKVGN 182 (1077)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~f~~~~~~G~i~~r~~~D~~~i~~~~~~~~~~ 182 (1077)
+..++++++++..++.+++.+++.+.+.+...++|.+++++++++|++|||+ .++|+|+||+++|++.+++.+...+..
T Consensus 955 ~~~i~~~l~~~~~i~~~~~~~~~~~~~~~~~~~L~~~l~~~ll~~p~~ffd~-~~~G~IlnR~s~Di~~id~~l~~~~~~ 1033 (1622)
T PLN03130 955 YNLIYALLSFGQVLVTLLNSYWLIMSSLYAAKRLHDAMLGSILRAPMSFFHT-NPLGRIINRFAKDLGDIDRNVAVFVNM 1033 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhcc-CCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555667777778888888888889999999999999999999999999998 499999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHH
Q 001438 183 FMHYISRFLGGFIIGFARVWQISLVTLSIVPLIAL-AGGMYAYVTIGLIARVRKSYVKAGEIAEEVIGNVRTVQAFAGED 261 (1077)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~l~l~~l~~~pl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~Ik~~~~e~ 261 (1077)
++..++.+++.++++++++|... +.++++++++. +..++.+..++..+......+...+.+.|+++|+++||+|++|+
T Consensus 1034 ~~~~~~~~i~~~i~i~~~~~~~~-~~~~pl~~~~~~~~~~~~~~~r~~~r~~~~~~s~~~~~~~Etl~Gi~tIraf~~~~ 1112 (1622)
T PLN03130 1034 FLGQIFQLLSTFVLIGIVSTISL-WAIMPLLVLFYGAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYD 1112 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHhCCHHHHHhCcHHH
Confidence 99999888888888887777332 22222222221 12223333333444444555667789999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---------cCHHHHHHHHHHHHHHH
Q 001438 262 KAVKVYKEALSNTYKYGRKAGLAKGLGLGSMHCVLFLSWSLLVWYVSVVVHKHI---------SNGGESFTTMLNVVIAG 332 (1077)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~---------~~~g~~~~~~~~~~~~~ 332 (1077)
+|.+++.+..+...+..........+......+ +..+++++.+...+..+. .+.|.+++ +.....
T Consensus 1113 ~f~~~~~~~~~~~~~~~~~~~~~~~wl~~~l~~---~~~~~i~~~~~~~v~~~~~~~~~~~~~~~~G~~ls---~~~~~~ 1186 (1622)
T PLN03130 1113 RMAEINGRSMDNNIRFTLVNMSSNRWLAIRLET---LGGLMIWLTASFAVMQNGRAENQAAFASTMGLLLS---YALNIT 1186 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHcccccccchhhhHHHHHHHH---HHHHHH
Confidence 888877766665444332221111111111111 111222222333333221 22333333 222333
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHhccCcccccccc--cCCCCCCCcccEEEEeEEEEcCCCCCcccccceeEEecCC
Q 001438 333 LSLGQAAPDITAFIRAKAAAYPIFEMIERDTMSKASSK--TGRKLDKLSGHIEFKDVSFCYPSRPDVAIFDKFCLDIPAG 410 (1077)
Q Consensus 333 ~~l~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~--~~~~~~~~~~~i~~~~v~~~y~~~~~~~~l~~isl~i~~g 410 (1077)
..+..+......+..+.++.+|+.++++.+++.+...+ .....++.+|.|+|+||+|+|+++ .+++|+|+||+|++|
T Consensus 1187 ~~l~~l~~~~~~~e~~~~sveRi~e~~~~~~E~~~~~~~~~~~~~wp~~g~I~f~nVsf~Y~~~-~~~VL~~is~~I~~G 1265 (1622)
T PLN03130 1187 SLLTAVLRLASLAENSLNAVERVGTYIDLPSEAPLVIENNRPPPGWPSSGSIKFEDVVLRYRPE-LPPVLHGLSFEISPS 1265 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccccccCCCCCCCCCCCCcEEEEEEEEEeCCC-CCceecceeEEEcCC
Confidence 44555555667778999999999999987654321111 111224556889999999999643 246999999999999
Q ss_pred cEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHHHhhheeEEccCCCcccccHHHHHhcCCCCCCHHHH
Q 001438 411 KIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIGLVNQEPALFATTIRENILYGKDDATMEEI 490 (1077)
Q Consensus 411 ~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~~ni~~~~~~~~~~~~ 490 (1077)
|++|||||||||||||+++|+|+|+|++|+|.+||+|+++++.+++|++|++|||||.||+|||||||.++. +.+++++
T Consensus 1266 ekVaIVGrSGSGKSTLl~lL~rl~~p~~G~I~IDG~dI~~i~l~~LR~~IsiVpQdp~LF~GTIreNLd~~~-~~tdeei 1344 (1622)
T PLN03130 1266 EKVGIVGRTGAGKSSMLNALFRIVELERGRILIDGCDISKFGLMDLRKVLGIIPQAPVLFSGTVRFNLDPFN-EHNDADL 1344 (1622)
T ss_pred CEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCEecccCCHHHHHhccEEECCCCccccccHHHHhCcCC-CCCHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999876 5789999
Q ss_pred HHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCC
Q 001438 491 TRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGR 570 (1077)
Q Consensus 491 ~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~~~p~illlDEpts~lD~~~~~~i~~~l~~~~~~~ 570 (1077)
++|++.+++++++..+|+|+||.+||+|.+|||||||||||||||+++|+|||||||||+||.++++.|++.|++..+++
T Consensus 1345 ~~Al~~a~l~~~I~~lp~GLdt~Vge~G~nLSgGQrQrlaLARALLr~p~ILILDEATSaLD~~Te~~Iq~~I~~~~~~~ 1424 (1622)
T PLN03130 1345 WESLERAHLKDVIRRNSLGLDAEVSEAGENFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSC 1424 (1622)
T ss_pred HHHHHHcCcHHHHHhCccccCccccCCCCCCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998999
Q ss_pred eEEEEccCchhHhhcCEEEEEECCEEEEecChhHHhcCCCchHHHHHHHHH
Q 001438 571 TTVVVAHRLSTIRNADVIAVVQGRKIVKTGSHEELISNPNSAYAALVQLQE 621 (1077)
Q Consensus 571 t~i~vtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~ 621 (1077)
|+|+||||++++.+||||+||++|+|+|.|+|+||++++++.|+++++...
T Consensus 1425 TvI~IAHRL~tI~~~DrIlVLd~G~IvE~Gt~~eLl~~~~g~f~~L~~~~~ 1475 (1622)
T PLN03130 1425 TMLIIAHRLNTIIDCDRILVLDAGRVVEFDTPENLLSNEGSAFSKMVQSTG 1475 (1622)
T ss_pred EEEEEeCChHHHHhCCEEEEEECCEEEEeCCHHHHHhCCCCHHHHHHHHcC
Confidence 999999999999999999999999999999999999876799999987654
|
|
| >PTZ00243 ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-74 Score=757.90 Aligned_cols=516 Identities=19% Similarity=0.237 Sum_probs=418.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhccCCChhHHHHHHHhHHHHHHHHHHHHHHH
Q 001438 103 YSLDFVYLSVAILFSSWIEVSCWMYTGERQAAKMRMAYLRSMLNQDISLFDTEASTGEVISAITSDIIVVQDALSEKVGN 182 (1077)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~f~~~~~~G~i~~r~~~D~~~i~~~~~~~~~~ 182 (1077)
+..+|+++.++..++.+++.+.....+.+...++|.++++++++.|+.|||+ .++|+++||+++|++.+++.+...+..
T Consensus 1000 ~l~~y~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ffd~-~~~G~ilnR~s~Di~~id~~l~~~l~~ 1078 (1560)
T PTZ00243 1000 YLYVYLGIVLLGTFSVPLRFFLSYEAMRRGSRNMHRDLLRSVSRGTMSFFDT-TPLGRILNRFSRDIDILDNTLPMSYLY 1078 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhccC-CCccHHHHHHHhhHHHHHHHHHHHHHH
Confidence 3344444444444555555555556677788899999999999999999998 499999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHH
Q 001438 183 FMHYISRFLGGFIIGFARVWQISLVTLSIVPLIALAGGMYAYVTIGLIARVRKSYVKAGEIAEEVIGNVRTVQAFAGEDK 262 (1077)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~l~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~Ik~~~~e~~ 262 (1077)
++..++.+++.++++++.+|.+.++++.+..+...+..++.+..+...+......+.....++|+++|+++||+|++|+.
T Consensus 1079 ~~~~~~~~i~~li~~~~~~p~~~~~~i~~~~~~~~i~~~~~~~~r~~~r~~~~~~s~l~s~~~E~l~G~~tIraf~~e~~ 1158 (1560)
T PTZ00243 1079 LLQCLFSICSSILVTSASQPFVLVALVPCGYLYYRLMQFYNSANREIRRIKSVAKSPVFTLLEEALQGSATITAYGKAHL 1158 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHcCHHHHHhCccHHH
Confidence 99999999999888888888544333222222223333444445555555556677788999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHhcccCHHHHHHHHHHHHHHHHHHHHhHH
Q 001438 263 AVKVYKEALSNTYKYGRKAGLAKGLGLGSMHCVLFLSWSLLVWYVSV--VVHKHISNGGESFTTMLNVVIAGLSLGQAAP 340 (1077)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~--~v~~~~~~~g~~~~~~~~~~~~~~~l~~~~~ 340 (1077)
+.+++.+..++..+...+......+......++..+..+++.+++.. +...+.+++|.+..++.+......++..+..
T Consensus 1159 ~~~~~~~~~d~~~~~~~~~~~~~~w~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~l~~a~~l~~~l~~l~~ 1238 (1560)
T PTZ00243 1159 VMQEALRRLDVVYSCSYLENVANRWLGVRVEFLSNIVVTVIALIGVIGTMLRATSQEIGLVSLSLTMAMQTTATLNWLVR 1238 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999888777666554444444433343333333333333332 2223446788765555555666778888888
Q ss_pred HHHHHHHHHHHHHHHHHHhccCccccccc-------------------------c-cCC---CCCCCcccEEEEeEEEEc
Q 001438 341 DITAFIRAKAAAYPIFEMIERDTMSKASS-------------------------K-TGR---KLDKLSGHIEFKDVSFCY 391 (1077)
Q Consensus 341 ~~~~~~~~~~s~~ri~~~l~~~~~~~~~~-------------------------~-~~~---~~~~~~~~i~~~~v~~~y 391 (1077)
.+..+.+++++.+|+.++++..++.+... . ..+ +.++..|.|+|+||+|+|
T Consensus 1239 ~~~~le~~~~s~eRi~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~f~nVsf~Y 1318 (1560)
T PTZ00243 1239 QVATVEADMNSVERLLYYTDEVPHEDMPELDEEVDALERRTGMAADVTGTVVIEPASPTSAAPHPVQAGSLVFEGVQMRY 1318 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCccccccccccccccccccccccccccccccccCCCcccCCCCCCCCeEEEEEEEEEe
Confidence 88999999999999999996433211000 0 000 012235789999999999
Q ss_pred CCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHHHhhheeEEccCCCccc
Q 001438 392 PSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIGLVNQEPALFA 471 (1077)
Q Consensus 392 ~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~ 471 (1077)
++. .+++|+|+||+|++||++||||+||||||||+++|+|+|+|++|+|.+||+|+++++.+++|++|+||||||.||+
T Consensus 1319 ~~~-~~~vL~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~p~~G~I~IDG~di~~i~l~~LR~~I~iVpQdp~LF~ 1397 (1560)
T PTZ00243 1319 REG-LPLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRELRRQFSMIPQDPVLFD 1397 (1560)
T ss_pred CCC-CCceeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccCCHHHHHhcceEECCCCcccc
Confidence 754 3469999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHHhccC-CCEEEEeCcCCC
Q 001438 472 TTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKN-PSILLLDEATSA 550 (1077)
Q Consensus 472 ~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~~~-p~illlDEpts~ 550 (1077)
|||||||..+ ++.+++++++|++.+++.+++..+|+|+||.+||+|.+|||||||||||||||+++ |+|||||||||+
T Consensus 1398 gTIreNIdp~-~~~sdeeI~~Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgGQrQrLaLARALL~~~~~ILlLDEATSa 1476 (1560)
T PTZ00243 1398 GTVRQNVDPF-LEASSAEVWAALELVGLRERVASESEGIDSRVLEGGSNYSVGQRQLMCMARALLKKGSGFILMDEATAN 1476 (1560)
T ss_pred ccHHHHhCcc-cCCCHHHHHHHHHHCCChHHHhhCcccccccccCCcCcCCHHHHHHHHHHHHHhcCCCCEEEEeCCCcc
Confidence 9999999865 36789999999999999999999999999999999999999999999999999996 899999999999
Q ss_pred CCHHHHHHHHHHHHHHhCCCeEEEEccCchhHhhcCEEEEEECCEEEEecChhHHhcCCCchHHHHHHHHH
Q 001438 551 LDAESENSVQEALDRVMVGRTTVVVAHRLSTIRNADVIAVVQGRKIVKTGSHEELISNPNSAYAALVQLQE 621 (1077)
Q Consensus 551 lD~~~~~~i~~~l~~~~~~~t~i~vtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~ 621 (1077)
||+++++.|++.|++..+++|+|+||||++++.+||+|+||++|+|+|.|+|+||++++++.|+++++.+.
T Consensus 1477 LD~~te~~Iq~~L~~~~~~~TvI~IAHRl~ti~~~DrIlVLd~G~VvE~Gt~~eLl~~~~~~f~~l~~~~~ 1547 (1560)
T PTZ00243 1477 IDPALDRQIQATVMSAFSAYTVITIAHRLHTVAQYDKIIVMDHGAVAEMGSPRELVMNRQSIFHSMVEALG 1547 (1560)
T ss_pred CCHHHHHHHHHHHHHHCCCCEEEEEeccHHHHHhCCEEEEEECCEEEEECCHHHHHhCCCCHHHHHHHHhC
Confidence 99999999999999988899999999999999999999999999999999999999876899999987653
|
|
| >TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-74 Score=694.27 Aligned_cols=522 Identities=21% Similarity=0.262 Sum_probs=444.4
Q ss_pred HhHHHHHHHHHHHHHHHHhcccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q 001438 69 GVSVPVFFIFFGKLINIIGLAYLFPKTASHKVAKYSLDFVYLSVAILFSSWIEVSCWMYTGERQAAKMRMAYLRSMLNQD 148 (1077)
Q Consensus 69 ~~~~p~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~ 148 (1077)
.+.....++++++++|...... . ......+...++++.++..++.+++.++..+.+.++..++|.++|++++++|
T Consensus 19 ~~~~l~~p~~~~~iid~~~~~~----~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~ 93 (544)
T TIGR01842 19 NILMLAPPLYMLQVYDRVLTSG----S-VPTLLMLTVLALGLYLFLGLLDALRSFVLVRIGEKLDGALNQPIFAASFSAT 93 (544)
T ss_pred HHHHHHHHHHHHHHHHHhccCC----c-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 3333344457788998653211 1 1222233444444555566778888888888999999999999999999999
Q ss_pred chhhccCCChhHHHHHHHhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001438 149 ISLFDTEASTGEVISAITSDIIVVQDALSE-KVGNFMHYISRFLGGFIIGFARVWQISLVTLSIVPLIALAGGMYAYVTI 227 (1077)
Q Consensus 149 ~~~f~~~~~~G~i~~r~~~D~~~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~l~~~pl~~~~~~~~~~~~~ 227 (1077)
+. ..++..+++++|++.+++.+.. .+..++..++.+ +.++++++++|.+++++++..|+++++..+..+..+
T Consensus 94 ~~------~~~~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~l~li~l~~~~l~~~i~~~~~~~~~ 166 (544)
T TIGR01842 94 LR------RGKIDGLQALRDLDQLRQFLTGPGLFAFFDAPWMP-IYLLVCFLLHPWIGILALGGAVVLVGLALLNNRATK 166 (544)
T ss_pred cc------CccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH-HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 83 2356788999999999998876 444455544444 445678899999999888888887777777777778
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001438 228 GLIARVRKSYVKAGEIAEEVIGNVRTVQAFAGEDKAVKVYKEALSNTYKYGRKAGLAKGLGLGSMHCVLFLSWSLLVWYV 307 (1077)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~E~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 307 (1077)
+..++.++..++..+.+.|.++|+++||+|++|+.+.++|++..++..+...+.....+....+..++..+..++++++|
T Consensus 167 ~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 246 (544)
T TIGR01842 167 KPLKEATEASIRANNLADSALRNAEVIEAMGMMGNLTKRWGRFHSKYLSAQSAASDRAGMLSNLSKYFRIVLQSLVLGLG 246 (544)
T ss_pred HHHHHHHHHHHHHhhHHHHHHhcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888889999999999999999999999999999999999998888888777777776666666666777888899
Q ss_pred HHHHHhcccCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhccCcccccccccCCCCCCCcccEEEEeE
Q 001438 308 SVVVHKHISNGGESFTTMLNVVIAGLSLGQAAPDITAFIRAKAAAYPIFEMIERDTMSKASSKTGRKLDKLSGHIEFKDV 387 (1077)
Q Consensus 308 ~~~v~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~v 387 (1077)
++++.+|.+|+|.+++++.+......|+..+...+..+.+++++.+|+.++++.+++.++. ....+.++.++++|+
T Consensus 247 ~~l~~~g~it~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~----~~~~~~~~~i~~~~v 322 (544)
T TIGR01842 247 AYLAIDGEITPGMMIAGSILVGRALAPIDGAIGGWKQFSGARQAYKRLNELLANYPSRDPA----MPLPEPEGHLSVENV 322 (544)
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccCC----CCCCCCCCeEEEEEE
Confidence 9999999999999998887777778899999999999999999999999999765432211 111223457999999
Q ss_pred EEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHHHhhheeEEccCC
Q 001438 388 SFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIGLVNQEP 467 (1077)
Q Consensus 388 ~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~ 467 (1077)
+|+|++. ++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.+||+++.+++.+++|++++||||+|
T Consensus 323 ~~~y~~~-~~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~ 401 (544)
T TIGR01842 323 TIVPPGG-KKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDRETFGKHIGYLPQDV 401 (544)
T ss_pred EEEcCCC-CccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEehhhCCHHHHhhheEEecCCc
Confidence 9999753 346899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccccHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHHhccCCCEEEEeCc
Q 001438 468 ALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEA 547 (1077)
Q Consensus 468 ~lf~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~~~p~illlDEp 547 (1077)
++|++|++|||.++.++.++++++++++.+++.++++.+|+|++|.+|++|.+||||||||++||||++++|+++|||||
T Consensus 402 ~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq~qrl~lARall~~~~ililDEp 481 (544)
T TIGR01842 402 ELFPGTVAENIARFGENADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALARALYGDPKLVVLDEP 481 (544)
T ss_pred ccccccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 99999999999987777889999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHh-CCCeEEEEccCchhHhhcCEEEEEECCEEEEecChhHHhc
Q 001438 548 TSALDAESENSVQEALDRVM-VGRTTVVVAHRLSTIRNADVIAVVQGRKIVKTGSHEELIS 607 (1077)
Q Consensus 548 ts~lD~~~~~~i~~~l~~~~-~~~t~i~vtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 607 (1077)
||+||+++++.+.+.|++.. +++|+|+||||++.++.||+|++|++|++++.|+|+|+++
T Consensus 482 ts~LD~~~~~~i~~~l~~~~~~~~tvi~ith~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 542 (544)
T TIGR01842 482 NSNLDEEGEQALANAIKALKARGITVVVITHRPSLLGCVDKILVLQDGRIARFGERDEVLA 542 (544)
T ss_pred ccccCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHHHHhCCEEEEEECCEEEeeCCHHHHhh
Confidence 99999999999999999875 6899999999999999999999999999999999999875
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >PLN03232 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-74 Score=761.71 Aligned_cols=513 Identities=19% Similarity=0.248 Sum_probs=407.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhccCCChhHHHHHHHhHHHHHHHHHHHHHH
Q 001438 102 KYSLDFVYLSVAILFSSWIEVSCWMYTGERQAAKMRMAYLRSMLNQDISLFDTEASTGEVISAITSDIIVVQDALSEKVG 181 (1077)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~f~~~~~~G~i~~r~~~D~~~i~~~~~~~~~ 181 (1077)
.|...|++++++..++.+++.+++.+.+.+...++|.+++++++++|++|||+ .++|+++||+++|++.+++.+...+.
T Consensus 951 ~~l~~y~~l~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~p~~ff~~-~~~G~ilnr~s~Di~~id~~l~~~~~ 1029 (1495)
T PLN03232 951 FYIVVYALLGFGQVAVTFTNSFWLISSSLHAAKRLHDAMLNSILRAPMLFFHT-NPTGRVINRFSKDIGDIDRNVANLMN 1029 (1495)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeeCc-CCchHHHHHhHhhHHHHHHHHHHHHH
Confidence 45666777777788888888888889999999999999999999999999998 49999999999999999999998888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccH
Q 001438 182 NFMHYISRFLGGFIIGFARVWQISLVTLSIVPLIALA-GGMYAYVTIGLIARVRKSYVKAGEIAEEVIGNVRTVQAFAGE 260 (1077)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~l~l~~l~~~pl~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~Ik~~~~e 260 (1077)
.++..++.+++.+++++++++...++ ++++++++.. ..++.+..+...+......+...+.+.|+++|+++||+|++|
T Consensus 1030 ~~~~~~~~~i~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~s~~~~~~~E~l~G~~tIraf~~~ 1108 (1495)
T PLN03232 1030 MFMNQLWQLLSTFALIGTVSTISLWA-IMPLLILFYAAYLYYQSTSREVRRLDSVTRSPIYAQFGEALNGLSSIRAYKAY 1108 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHhcChHHHhcCCcH
Confidence 88888888888877777766533222 2222222211 122223333444455566677788999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cccC----HHHHHH-HHHHHHHHHHH
Q 001438 261 DKAVKVYKEALSNTYKYGRKAGLAKGLGLGSMHCVLFLSWSLLVWYVSVVVHK-HISN----GGESFT-TMLNVVIAGLS 334 (1077)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~-~~~~----~g~~~~-~~~~~~~~~~~ 334 (1077)
++|.+++.+..+...+..........+.... +..+..+++++.+...+.. +... .+..+. ++.+......+
T Consensus 1109 ~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~---~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 1185 (1495)
T PLN03232 1109 DRMAKINGKSMDNNIRFTLANTSSNRWLTIR---LETLGGVMIWLTATFAVLRNGNAENQAGFASTMGLLLSYTLNITTL 1185 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHHHHH
Confidence 9988888777665554433222111111111 1111222222223333332 2211 111122 22233334456
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHhccCccccccccc--CCCCCCCcccEEEEeEEEEcCCCCCcccccceeEEecCCcE
Q 001438 335 LGQAAPDITAFIRAKAAAYPIFEMIERDTMSKASSKT--GRKLDKLSGHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKI 412 (1077)
Q Consensus 335 l~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~--~~~~~~~~~~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~ 412 (1077)
+..+...+..+..+.++.+|+.++++.+++.+..... .+..++.+|.|+|+||+|+|+++ .+++|+|+||+|++||+
T Consensus 1186 l~~l~~~~~~~~~~~~s~eRi~e~~~~~~e~~~~~~~~~~~~~~p~~g~I~f~nVsf~Y~~~-~~~vL~~isl~I~~Gek 1264 (1495)
T PLN03232 1186 LSGVLRQASKAENSLNSVERVGNYIDLPSEATAIIENNRPVSGWPSRGSIKFEDVHLRYRPG-LPPVLHGLSFFVSPSEK 1264 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccccCCCCCCCCCCCCcEEEEEEEEEECCC-CCcccccceEEEcCCCE
Confidence 6777778888999999999999999876543211111 11224556789999999999643 24699999999999999
Q ss_pred EEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHHHhhheeEEccCCCcccccHHHHHhcCCCCCCHHHHHH
Q 001438 413 VALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIGLVNQEPALFATTIRENILYGKDDATMEEITR 492 (1077)
Q Consensus 413 ~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~~ni~~~~~~~~~~~~~~ 492 (1077)
+|||||||||||||+++|+|+|+|++|+|.+||+|+++++.+++|++|+||||||.+|+|||||||.++. +.+++++++
T Consensus 1265 vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~i~iVpQdp~LF~gTIr~NL~~~~-~~sdeei~~ 1343 (1495)
T PLN03232 1265 VGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKFGLTDLRRVLSIIPQSPVLFSGTVRFNIDPFS-EHNDADLWE 1343 (1495)
T ss_pred EEEECCCCCCHHHHHHHHhCCCcCCCceEEECCEEhhhCCHHHHHhhcEEECCCCeeeCccHHHHcCCCC-CCCHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999875 678999999
Q ss_pred HHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeE
Q 001438 493 AAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTT 572 (1077)
Q Consensus 493 ~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~~~p~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~ 572 (1077)
+++.++++++++++|+|+||.+||+|.+||||||||+||||||+++|+|||||||||+||+++++.|++.|++..+++|+
T Consensus 1344 al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrlaLARALLr~~~ILILDEATSaLD~~Te~~Iq~~L~~~~~~~Tv 1423 (1495)
T PLN03232 1344 ALERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQRTIREEFKSCTM 1423 (1495)
T ss_pred HHHHcCCHHHHHhCcCCCCceecCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998889999
Q ss_pred EEEccCchhHhhcCEEEEEECCEEEEecChhHHhcCCCchHHHHHHHHH
Q 001438 573 VVVAHRLSTIRNADVIAVVQGRKIVKTGSHEELISNPNSAYAALVQLQE 621 (1077)
Q Consensus 573 i~vtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~ 621 (1077)
|+||||++++.+||+|+||++|+|+|.|+|+||++++++.|+++++.+.
T Consensus 1424 I~IAHRl~ti~~~DrIlVL~~G~ivE~Gt~~eLl~~~~~~f~~l~~~~~ 1472 (1495)
T PLN03232 1424 LVIAHRLNTIIDCDKILVLSSGQVLEYDSPQELLSRDTSAFFRMVHSTG 1472 (1495)
T ss_pred EEEeCCHHHHHhCCEEEEEECCEEEEECCHHHHHhCCCCHHHHHHHHhC
Confidence 9999999999999999999999999999999999886679999987653
|
|
| >KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-74 Score=716.08 Aligned_cols=512 Identities=22% Similarity=0.311 Sum_probs=435.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhccCCChhHHHHHHHhHHHHHHHHHHHHH
Q 001438 101 AKYSLDFVYLSVAILFSSWIEVSCWMYTGERQAAKMRMAYLRSMLNQDISLFDTEASTGEVISAITSDIIVVQDALSEKV 180 (1077)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~f~~~~~~G~i~~r~~~D~~~i~~~~~~~~ 180 (1077)
..+..+|.+++++..++..++.+.+...+.+.+.+++.+++++++|.||+|||.+ ++|+|+||+++|++.+|+.+...+
T Consensus 858 ~~~~~vY~~l~~~~~~~~~~rs~~~~~~~l~aS~~Lh~~ml~~Ilrapm~FFdtT-P~GRILNRFSkD~~~vD~~Lp~~~ 936 (1381)
T KOG0054|consen 858 SFYLGVYALLGVASSLLTLLRSFLFAKGGLKASRKLHDKLLNSILRAPMSFFDTT-PTGRILNRFSKDIDTVDVLLPFTL 936 (1381)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhcCCC-CccchhhhcccchHHHHHhhHHHH
Confidence 4567778888888888988999999999999999999999999999999999995 999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccH
Q 001438 181 GNFMHYISRFLGGFIIGFARVWQISLVTLSIVPLIALAGGMYAYVTIGLIARVRKSYVKAGEIAEEVIGNVRTVQAFAGE 260 (1077)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~l~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~Ik~~~~e 260 (1077)
..++..++.+++.++++.+..|...++++.+..+.+.+..++.+-.+...+......+....+++|+++|+.|||+|+.|
T Consensus 937 ~~~~~~~~~~l~~~~vi~~~~P~fli~~~pl~v~~~~~~~~Y~~tsReLkRLesitRSPi~sh~~Etl~GlsTIRAf~~~ 1016 (1381)
T KOG0054|consen 937 EFFLQSLLNVLGILVVISYVTPWFLIAIIPLGVIYYFVQRYYLATSRELKRLESITRSPIYSHFSETLQGLSTIRAFGKE 1016 (1381)
T ss_pred HHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhcccchHHHhHHHHhcCcceeeecccc
Confidence 99999999999999999999998877666555555555566666666666666666777778999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHH
Q 001438 261 DKAVKVYKEALSNTYKYG---RKAGLAKGLGLGSMHCVLFLSWSLLVWYVSVVVHKHISNGGESFTTMLNVVIAGLSLGQ 337 (1077)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~g~~~~~~~~~~~~~~~l~~ 337 (1077)
++|.+++.+..+...+.. ....+|.++..-++..+..++.+++..+ ...+..++|.+=-.+.+.+.+...+..
T Consensus 1017 ~rf~~~~~~~~D~~~~~~f~~~~a~RWla~Rle~ig~~~v~~~al~~vl----~~~~~~~~g~vGLslsyal~lt~~l~~ 1092 (1381)
T KOG0054|consen 1017 ERFIQENDELIDENSRAFFLSISANRWLAVRLELLGNLVVLIAALFAVL----LPSGLISPGLVGLSLSYALQLTGLLQW 1092 (1381)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----ccCCCCCcchHHHHHHHHHHHHHHHHH
Confidence 999999999887765543 3456666665554333322222221111 112224556554444555666666777
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhccCcccccc--cccCCCCCCCcccEEEEeEEEEcCCCCCcccccceeEEecCCcEEEE
Q 001438 338 AAPDITAFIRAKAAAYPIFEMIERDTMSKAS--SKTGRKLDKLSGHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVAL 415 (1077)
Q Consensus 338 ~~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~--~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~i 415 (1077)
+......+....+|.+|+.++.+.+++.+.. ...+++.||.+|+|+|+|++.+|.++ .++||+||||+|+|||++||
T Consensus 1093 ~vR~~~elEn~m~SVERv~eY~~~~~E~p~~~~~~~pp~~WP~~G~I~f~~~~~RYrp~-lp~VLk~is~~I~p~eKVGI 1171 (1381)
T KOG0054|consen 1093 LVRQSSELENNMVSVERVLEYTDIPSEAPLEIEESRPPPSWPSKGEIEFEDLSLRYRPN-LPLVLKGISFTIKPGEKVGI 1171 (1381)
T ss_pred HHHHHHHHHhcchhhhHHHHHhcCCCCCCCCCcCCCCCCCCCCCCeEEEEEeEEEeCCC-CcchhcCceEEEcCCceEEE
Confidence 7778888889999999999999865551111 11134558999999999999999765 35799999999999999999
Q ss_pred EcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHHHhhheeEEccCCCcccccHHHHHhcCCCCCCHHHHHHHHH
Q 001438 416 VGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIGLVNQEPALFATTIRENILYGKDDATMEEITRAAK 495 (1077)
Q Consensus 416 vG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~~ni~~~~~~~~~~~~~~~~~ 495 (1077)
||++|||||||+++|.|+.+|.+|+|.|||.|+.+++++++|++++.+||||.||+||+|.|+. +...++++++++|++
T Consensus 1172 VGRTGaGKSSL~~aLFRl~e~~~G~I~IDgvdI~~igL~dLRsrlsIIPQdPvLFsGTvR~NLD-Pf~e~sD~~IW~ALe 1250 (1381)
T KOG0054|consen 1172 VGRTGAGKSSLILALFRLVEPAEGEILIDGVDISKIGLHDLRSRLSIIPQDPVLFSGTVRFNLD-PFDEYSDDEIWEALE 1250 (1381)
T ss_pred eCCCCCCHHHHHHHHHHhcCccCCeEEEcCeecccccHHHHHhcCeeeCCCCceecCccccccC-cccccCHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999986 235689999999999
Q ss_pred HHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEE
Q 001438 496 LSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVV 575 (1077)
Q Consensus 496 ~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~~~p~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~v 575 (1077)
.+++.+.+.++|.|+|+.|.|+|.|+|-||||.+||||||+++++||+|||||+++|++|...||+.|++..+++|||.|
T Consensus 1251 ~~~Lk~~v~~~p~~Ld~~v~egG~N~SvGQRQLlCLARALLr~skILvLDEATAsVD~~TD~lIQ~tIR~~F~dcTVltI 1330 (1381)
T KOG0054|consen 1251 RCQLKDVVSSLPGGLDSEVSEGGENFSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREEFKDCTVLTI 1330 (1381)
T ss_pred HhChHHHHhhCCcCCCceecCCCccCChHHHHHHHHHHHHhccCCEEEEecccccCChHHHHHHHHHHHHHhcCCeEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCchhHhhcCEEEEEECCEEEEecChhHHhcCCCchHHHHHHH
Q 001438 576 AHRLSTIRNADVIAVVQGRKIVKTGSHEELISNPNSAYAALVQL 619 (1077)
Q Consensus 576 tH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~ 619 (1077)
+||++++.+||||+|||+|+|+|.|+|++|++++++.|+++...
T Consensus 1331 AHRl~TVmd~DrVlVld~G~v~EfdsP~~Ll~~~~S~f~~~l~~ 1374 (1381)
T KOG0054|consen 1331 AHRLNTVMDSDRVLVLDAGRVVEFDSPAELLSDKDSLFSSLLKE 1374 (1381)
T ss_pred eeccchhhhcCeEEEeeCCeEeecCChHHHHhCCcchHHHHHHH
Confidence 99999999999999999999999999999999888988755543
|
|
| >TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-70 Score=720.22 Aligned_cols=502 Identities=18% Similarity=0.241 Sum_probs=404.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhccCCChhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 001438 111 SVAILFSSWIEVSCWMYTGERQAAKMRMAYLRSMLNQDISLFDTEASTGEVISAITSDIIVVQDALSEKVGNFMHYISRF 190 (1077)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~f~~~~~~G~i~~r~~~D~~~i~~~~~~~~~~~~~~~~~~ 190 (1077)
+++..++.+++.+++.+.+.+...++|.++++++++.|++||++ .++|+++||+++|++.+++.+...+..++..++.+
T Consensus 935 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ff~~-~~~G~ilnRfs~Di~~id~~l~~~~~~~~~~~~~~ 1013 (1490)
T TIGR01271 935 ADSVLALGFFRGLPLVHTLLTVSKRLHEQMLHSVLQAPMAVLNT-MKAGRILNRFTKDMAIIDDMLPLTLFDFIQLTLIV 1013 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCC-CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445566777778888899999999999999999999999998 49999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHH
Q 001438 191 LGGFIIGFARVWQISLVTLSIVPLIALAGGMYAYVTIGLIARVRKSYVKAGEIAEEVIGNVRTVQAFAGEDKAVKVYKEA 270 (1077)
Q Consensus 191 ~~~~~~~~~~~~~l~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~Ik~~~~e~~~~~~~~~~ 270 (1077)
++.++++++++|.++++++.++.+++++..++.+..+...+......+.....+.|+++|+.+||+|++|+.+.+++.+.
T Consensus 1014 i~~l~~i~~~~p~l~l~~~~l~~~~~~~~~~~~~~~r~l~~~~~~~~s~l~~~~~Etl~Gl~tIraf~~~~~~~~~~~~~ 1093 (1490)
T TIGR01271 1014 LGAIFVVSVLQPYIFIAAIPVAVIFIMLRAYFLRTSQQLKQLESEARSPIFSHLITSLKGLWTIRAFGRQSYFETLFHKA 1093 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCHHHHHHhCCcHHHHHHHHHH
Confidence 99999889899887654333333333333444444455555556666778889999999999999999999999999998
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 001438 271 LSNTYKYGRKAGLAKGLGLGSMHCVLFLS--WSLLVWYVSVVVHKHISNGGESFTTMLNVVIAGLSLGQAAPDITAFIRA 348 (1077)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~g~~~v~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 348 (1077)
.+...+..........+......++..+. .+++++++.. ..+.|.+-.++.+.+....++..+...+..+..+
T Consensus 1094 ~~~~~~~~~~~~~~~~wl~~~~~~i~~~~~~~~~~l~~~~~-----~~~~g~~g~~l~~~~~l~~~l~~l~~~~~~le~~ 1168 (1490)
T TIGR01271 1094 LNLHTANWFLYLSTLRWFQMRIDIIFVFFFIAVTFIAIGTN-----QDGEGEVGIILTLAMNILSTLQWAVNSSIDVDGL 1168 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----cCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 87654433322222222221111111111 1111222221 2333333232333334445566667777888899
Q ss_pred HHHHHHHHHHhccCcccccccc----------------cCCCCCCCcccEEEEeEEEEcCCCCCcccccceeEEecCCcE
Q 001438 349 KAAAYPIFEMIERDTMSKASSK----------------TGRKLDKLSGHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKI 412 (1077)
Q Consensus 349 ~~s~~ri~~~l~~~~~~~~~~~----------------~~~~~~~~~~~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~ 412 (1077)
+.|.+|+.++++.+++...... ..+..|+..|.|+|+||+|+|++. .+++|+|+||+|++||+
T Consensus 1169 ~~s~eRi~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~wp~~g~I~f~nVs~~Y~~~-~~~vL~~is~~I~~Gek 1247 (1490)
T TIGR01271 1169 MRSVSRVFKFIDLPQEEPRPSGGGGKYQLSTVLVIENPHAQKCWPSGGQMDVQGLTAKYTEA-GRAVLQDLSFSVEGGQR 1247 (1490)
T ss_pred HHHHHHHHHHhcCCCccccccccccccccccccccccCCCCCCCCCCCeEEEEEEEEEeCCC-CcceeeccEEEEcCCCE
Confidence 9999999999976554221100 001124556889999999999753 35799999999999999
Q ss_pred EEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHHHhhheeEEccCCCcccccHHHHHhcCCCCCCHHHHHH
Q 001438 413 VALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIGLVNQEPALFATTIRENILYGKDDATMEEITR 492 (1077)
Q Consensus 413 ~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~~ni~~~~~~~~~~~~~~ 492 (1077)
+||||+||||||||+++|+|+++ .+|+|.+||+|+++++.+++|++|+||||+|.+|+|||||||... ...+++++++
T Consensus 1248 vaIvGrSGsGKSTLl~lL~rl~~-~~G~I~IdG~di~~i~~~~lR~~is~IpQdp~LF~GTIR~NLdp~-~~~tdeei~~ 1325 (1490)
T TIGR01271 1248 VGLLGRTGSGKSTLLSALLRLLS-TEGEIQIDGVSWNSVTLQTWRKAFGVIPQKVFIFSGTFRKNLDPY-EQWSDEEIWK 1325 (1490)
T ss_pred EEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEcccCCHHHHHhceEEEeCCCccCccCHHHHhCcc-cCCCHHHHHH
Confidence 99999999999999999999997 799999999999999999999999999999999999999999754 3578999999
Q ss_pred HHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeE
Q 001438 493 AAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTT 572 (1077)
Q Consensus 493 ~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~~~p~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~ 572 (1077)
+++.+++.+++..+|+|+||.+||+|.+||||||||+||||||+++|+|||||||||+||.++++.|++.|++..+++|+
T Consensus 1326 aL~~~~L~~~i~~lp~GLdt~v~e~G~nLSgGQrQrL~LARALLr~~~ILlLDEaTS~lD~~Te~~I~~~L~~~~~~~Tv 1405 (1490)
T TIGR01271 1326 VAEEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTLKQSFSNCTV 1405 (1490)
T ss_pred HHHHCCCHHHHHhCccccccccccCCCcCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998899999
Q ss_pred EEEccCchhHhhcCEEEEEECCEEEEecChhHHhcCCCchHHHHHHHHHH
Q 001438 573 VVVAHRLSTIRNADVIAVVQGRKIVKTGSHEELISNPNSAYAALVQLQEA 622 (1077)
Q Consensus 573 i~vtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~~ 622 (1077)
|+||||++++..||+|+||++|+|+|.|+|++|+++ ++.|+++++.+..
T Consensus 1406 I~IaHRl~ti~~~DrIlvL~~G~ivE~g~p~~Ll~~-~~~f~~l~~~~~~ 1454 (1490)
T TIGR01271 1406 ILSEHRVEALLECQQFLVIEGSSVKQYDSIQKLLNE-TSLFKQAMSAADR 1454 (1490)
T ss_pred EEEecCHHHHHhCCEEEEEECCEEEEeCCHHHHHcC-CcHHHHHHHHhCh
Confidence 999999999999999999999999999999999975 8999999876543
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. |
| >TIGR01194 cyc_pep_trnsptr cyclic peptide transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-70 Score=659.35 Aligned_cols=534 Identities=19% Similarity=0.164 Sum_probs=426.1
Q ss_pred hHHHHHHhhc-hhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcccCCchhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 001438 42 SLFKLFAFAD-FYDYILMSLGSIGACVHGVSVPVFFIFFGKLINIIGLAYLFPKTASHKVAKYSLDFVYLSVAILFSSWI 120 (1077)
Q Consensus 42 ~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (1077)
.+++++++++ ++ +..+++++++.++.++.....+.+++.+++... ... ... ...++++.++..++.++
T Consensus 4 ~~~~l~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~i~~~i~~~~----~~~--~~~----~~~~~~~~~~~~~~~~~ 72 (555)
T TIGR01194 4 AIGEILALLRSPF-PAITAFSIALGLAGGLAIIALLASINNAIHEEN----FLG--QGS----LFSFGGLCLLALLFRIG 72 (555)
T ss_pred hHHHHHHHHhhcc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC----ccc--chH----HHHHHHHHHHHHHHHHH
Confidence 3455555555 33 333444445555555555555556666665310 000 001 11233344455677788
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhccCCChhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001438 121 EVSCWMYTGERQAAKMRMAYLRSMLNQDISLFDTEASTGEVISAITSDIIVVQDALSEKVGNFMHYISRFLGGFIIGFAR 200 (1077)
Q Consensus 121 ~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~f~~~~~~G~i~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (1077)
..++....+.++..++|.++|++++++|+.+|++ .++|++++|+++|++.+++.+.. +..++..+.++++.+++++++
T Consensus 73 ~~~~~~~~~~~~~~~lR~~l~~~l~~~~~~~~~~-~~~G~l~srl~~Dv~~i~~~~~~-~~~~~~~~~~~~~~~~~l~~~ 150 (555)
T TIGR01194 73 ADIFPAYAGMHIIANLRIALCEKILGAPIEEIDR-RGAHNLIPLLTHDIDQINAFLFI-FPPIAIALAIFFFCIAYLAYL 150 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHh-cCcchhhHHHhhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 8888888999999999999999999999999998 48999999999999999998864 777888888888888999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHH--HHHHHHHHHHHHHHHHH
Q 001438 201 VWQISLVTLSIVPLIALAGGMYAYVTIGLIARVRKSYVKAGEIAEEVIGNVRTVQAFAGED--KAVKVYKEALSNTYKYG 278 (1077)
Q Consensus 201 ~~~l~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~Ik~~~~e~--~~~~~~~~~~~~~~~~~ 278 (1077)
+|.+++++++++|+.+++..+..++.++...+.++..++.++.+.|.+.|+++||+|+.++ .+.+++.+..++..+..
T Consensus 151 ~~~L~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (555)
T TIGR01194 151 SVPMFAITISAIIIGTAAQLLAFMGGFKFFHAARDEEDAFNEHTHAIAFGAKELKIHGIRRLSFAHGAIQESANNIADLH 230 (555)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHhcCHHHHHHHHHHHhhHHHHHHHHHH
Confidence 9999999888888887777777777777788888888999999999999999999999954 56778888887777766
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 001438 279 RKAGLAKGLGLGSMHCVLFLSWSLLVWYVSVVVHKHISNGGESFTTMLNVVIAGLSLGQAAPDITAFIRAKAAAYPIFEM 358 (1077)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~ 358 (1077)
.+.....+....+..++..+...+.++++++. +.++.|.+++++.+......|+..+...+..+++++++++|+.++
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~t~g~l~a~~~~~~~l~~pi~~l~~~~~~~~~a~~s~~ri~~l 307 (555)
T TIGR01194 231 IIEILIFIAAENFGQLLFFLLIGCALFAAAMF---ASIDAAAISAFVLALLYIKGPLEMLVSALPILAQAQIACQRLADF 307 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66555554444433344334434444555432 678999988888777777889999999999999999999999999
Q ss_pred hccCcccccc---cc-cCC---CCCCCcccEEEEeEEEEcCCCC--CcccccceeEEecCCcEEEEEcCCCCcHHHHHHH
Q 001438 359 IERDTMSKAS---SK-TGR---KLDKLSGHIEFKDVSFCYPSRP--DVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISL 429 (1077)
Q Consensus 359 l~~~~~~~~~---~~-~~~---~~~~~~~~i~~~~v~~~y~~~~--~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~ 429 (1077)
++.+++.+.. +. .+. ......+.|+++||+|+|++.+ +.++|+|+||++++||+++|+||||||||||+++
T Consensus 308 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~l 387 (555)
T TIGR01194 308 GERFNEPEPELELSDADNVLLLAHDKSVDSIELKDVHMNPKAPEGSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKL 387 (555)
T ss_pred HhhhccccccccccccccccccccCCCCceEEEEEEEEEeCCCCCCcCceeccceEEEcCCcEEEEECCCCCCHHHHHHH
Confidence 7632111000 00 000 1112235799999999997532 2368999999999999999999999999999999
Q ss_pred HhcccCCCccEEEECCeeCCCCCHHHHhhheeEEccCCCcccccHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHhcCccc
Q 001438 430 IERFYEPLSGEILLDGNNIKGLDLKWLRQQIGLVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPER 509 (1077)
Q Consensus 430 l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g 509 (1077)
|+|+++|++|+|.+||+++++++.+++|++++||+|||++|++|+++|+ .++.+++++.++++.+++.++++.+|+|
T Consensus 388 l~g~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~ti~~n~---~~~~~~~~~~~~~~~~~l~~~~~~lp~g 464 (555)
T TIGR01194 388 FCGLYIPQEGEILLDGAAVSADSRDDYRDLFSAIFADFHLFDDLIGPDE---GEHASLDNAQQYLQRLEIADKVKIEDGG 464 (555)
T ss_pred HhCCCCCCCcEEEECCEECCCCCHHHHHhhCcEEccChhhhhhhhhccc---ccchhHHHHHHHHHHcCCchhhcccccc
Confidence 9999999999999999999999999999999999999999999999995 3556788899999999999999999999
Q ss_pred hhhhhcCCCCCCChHHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHH-HH-hCCCeEEEEccCchhHhhcCE
Q 001438 510 FETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALD-RV-MVGRTTVVVAHRLSTIRNADV 587 (1077)
Q Consensus 510 ~~t~~~~~g~~LSgGqkqri~lARal~~~p~illlDEpts~lD~~~~~~i~~~l~-~~-~~~~t~i~vtH~~~~~~~~d~ 587 (1077)
+||. .+||||||||++||||++++|+|+|||||||+||+++++.+.+.+. .. .+++|+|+||||+++++.||+
T Consensus 465 ~~t~-----~~LSgGq~qRlalaRall~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tiiiisH~~~~~~~~d~ 539 (555)
T TIGR01194 465 FSTT-----TALSTGQQKRLALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLKRQGKTIIIISHDDQYFELADQ 539 (555)
T ss_pred cCCc-----ccCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHhCCE
Confidence 9984 6899999999999999999999999999999999999999988764 34 468999999999999999999
Q ss_pred EEEEECCEEEEe
Q 001438 588 IAVVQGRKIVKT 599 (1077)
Q Consensus 588 i~~l~~G~i~~~ 599 (1077)
|++|++|+++|.
T Consensus 540 i~~l~~G~i~~~ 551 (555)
T TIGR01194 540 IIKLAAGCIVKD 551 (555)
T ss_pred EEEEECCEEEEe
Confidence 999999999875
|
This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake. |
| >COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-72 Score=597.33 Aligned_cols=491 Identities=31% Similarity=0.412 Sum_probs=416.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCchhhccCCChhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH
Q 001438 123 SCWMYTGERQAAKMRMAYLRSMLNQDISLFDTEASTGEVISAITSDIIVVQDALSEKVGNFMHYISRFLGGFII-GFARV 201 (1077)
Q Consensus 123 ~~~~~~~~~~~~~lr~~~~~~ll~~~~~~f~~~~~~G~i~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 201 (1077)
..+...++.....+--..|.|+.++++.|+-+ ..+|.+..-+.....-|+..+...+...+..++-+....++ ...++
T Consensus 4 ~~fs~v~q~a~r~la~~~F~h~~~Lsl~fHl~-r~TGglsR~ierGtkgI~~i~~~~l~~i~P~~~Ei~l~~vi~~~~~~ 82 (497)
T COG5265 4 RLFSPVGQIAVRVLAYVTFFHLHSLSLRFHLE-RRTGGLSRAIERGTKGIETILRWILFNILPTLVEISLVAVILWRVYG 82 (497)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHhcchhhhhh-cccCceeeHhhcCcccHHHHHHHHHHHhhHHHHHHHHHHHHHHhhcc
Confidence 34556677778888888999999999999987 47888877666666666666655555555555554444433 34578
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHH
Q 001438 202 WQISLVTLSIVPLIALAGGMYAYVTIGLIARVRKSYVKAGEIAEEVIGNVRTVQAFAGEDKAVKVYKEALSNTYKYGRKA 281 (1077)
Q Consensus 202 ~~l~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~ 281 (1077)
|+.++++++++.+.+++.....-+.....+...+.-++++....+++-+..++|.|+.|+.+..+|.+.++.+.+...|.
T Consensus 83 ~~f~~~t~vtv~lY~~ftv~~s~wr~~~rr~~n~aDs~a~~~aidsLlnfEtvk~F~ne~~e~~r~~~~~~~Y~~a~~k~ 162 (497)
T COG5265 83 WWFALTTLVTVILYLLFTVIVSDWRTDFRRLMNNADSDANAKAIDSLLNFETVKYFGNEEYEAVRYDHALETYEKAAIKV 162 (497)
T ss_pred cHHHHHHHHHHHHHHHhheeehhhhHHHHHhhhhhhhHHHHHHHHHHhhhhheeecCchhhhhhhcCchHHHHHHHHHHH
Confidence 99888888888777777666655555566666777778888899999999999999999999999999999998888776
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcc
Q 001438 282 GLAKGLGLGSMHCVLFLSWSLLVWYVSVVVHKHISNGGESFTTMLNVVIAGLSLGQAAPDITAFIRAKAAAYPIFEMIER 361 (1077)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~ 361 (1077)
..-.++....-..+......+....+...+..|.+|.|++...-.++.+...|+..+......+.+++.-.++.+++++.
T Consensus 163 ~~Sl~~Ln~gQ~~I~~~~l~~~m~~s~~~v~~g~~TvgD~V~~Nall~qls~Plnflg~~Yrei~q~ltdme~mfdLl~~ 242 (497)
T COG5265 163 HVSLLVLNFGQTAIFSTGLRVMMTMSALGVEEGQLTVGDLVNVNALLFQLSIPLNFLGFSYREIRQALTDMEKMFDLLDV 242 (497)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHhhcHHHHhhccCCchhHHhHHHHHhhhhhhhhhhHHHHHHHHHhhhhHHHHHHhhcc
Confidence 55444433322333333444555566777788999999987766666777888888888899999999999999999987
Q ss_pred CcccccccccCCCCC-CCcccEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccE
Q 001438 362 DTMSKASSKTGRKLD-KLSGHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGE 440 (1077)
Q Consensus 362 ~~~~~~~~~~~~~~~-~~~~~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~ 440 (1077)
+.+..+. +..++.+ -..+.+.|+||+|.|.. ..++|+++||++++|+++|+|||+|+||||++++|.|+|++++|.
T Consensus 243 ~~~v~d~-pda~~L~~~~~g~v~F~~V~F~y~~--~r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD~~sG~ 319 (497)
T COG5265 243 EAEVSDA-PDAPPLWPVRLGAVAFINVSFAYDP--RRPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSGS 319 (497)
T ss_pred chhhccC-CCCccccccccceEEEEEEEeeccc--cchhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhCCcCce
Confidence 6554332 1222333 33578999999999974 457999999999999999999999999999999999999999999
Q ss_pred EEECCeeCCCCCHHHHhhheeEEccCCCcccccHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCC
Q 001438 441 ILLDGNNIKGLDLKWLRQQIGLVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQ 520 (1077)
Q Consensus 441 i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~ 520 (1077)
|.+||+|+++...+.+|+.||.||||..||++|+..||.+|++..+++++..+++.++.+++++.+|+|++|.|||+|-.
T Consensus 320 I~id~qdir~vtq~slR~aIg~VPQDtvLFNDti~yni~ygr~~at~eev~aaa~~aqi~~fi~~lP~gy~t~Vgerglk 399 (497)
T COG5265 320 ITIDGQDIRDVTQQSLRRAIGIVPQDTVLFNDTIAYNIKYGRPDATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGLK 399 (497)
T ss_pred EEEcchhHHHhHHHHHHHHhCcCcccceehhhhHHHHHhccCccccHHHHHHHHHHhhhhHHHHhCchhhhcccchheee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEccCchhHhhcCEEEEEECCEEEEec
Q 001438 521 LSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRNADVIAVVQGRKIVKTG 600 (1077)
Q Consensus 521 LSgGqkqri~lARal~~~p~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~vtH~~~~~~~~d~i~~l~~G~i~~~g 600 (1077)
||||||||+||||+++++|+||+|||+|||||.++|+.|+..|++..+|+|+++|+||++++-+||.|+||++|+|+|.|
T Consensus 400 lSggekqrvaiar~ilk~p~il~~deatsaldt~te~~iq~~l~~~~~~rttlviahrlsti~~adeiivl~~g~i~erg 479 (497)
T COG5265 400 LSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQAALREVSAGRTTLVIAHRLSTIIDADEIIVLDNGRIVERG 479 (497)
T ss_pred ccCchHHHHHHHHHHhcCCCEEEEehhhhHhhhhHHHHHHHHHHHHhCCCeEEEEeehhhhccCCceEEEeeCCEEEecC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhHHhcCCCchHHHHHH
Q 001438 601 SHEELISNPNSAYAALVQ 618 (1077)
Q Consensus 601 ~~~~l~~~~~~~~~~~~~ 618 (1077)
+|+||+++ +|.|++|+.
T Consensus 480 ~h~~ll~~-~g~ya~mw~ 496 (497)
T COG5265 480 THEELLAA-GGLYAEMWR 496 (497)
T ss_pred cHHHHHHc-CChHHHHhc
Confidence 99999998 999999874
|
|
| >COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-67 Score=576.78 Aligned_cols=520 Identities=21% Similarity=0.266 Sum_probs=441.6
Q ss_pred HHHHHHHHHHHHHhcccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhc
Q 001438 74 VFFIFFGKLINIIGLAYLFPKTASHKVAKYSLDFVYLSVAILFSSWIEVSCWMYTGERQAAKMRMAYLRSMLNQDISLFD 153 (1077)
Q Consensus 74 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~f~ 153 (1077)
..++++-++-|.+.+... ..++.....+.+++.++..++-+++.....+.+.++..++...+|.+.++.+..--
T Consensus 41 ~~~lyMLQVyDRVL~S~s-----~~TLv~Ltvlal~ly~~~glLd~iR~~~l~Rig~~lD~~L~~~v~~a~~~~~l~~~- 114 (580)
T COG4618 41 TGPLYMLQVYDRVLPSRS-----VPTLVMLTVLALGLYAFQGLLDAIRSRVLVRIGERLDRQLNGPVFAASFSAPLLRR- 114 (580)
T ss_pred hhhHHHHHHHhhhccCCC-----cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHhhHHhhc-
Confidence 334455577787654321 12222333334444556678888999999999999999999999999987766542
Q ss_pred cCCChhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001438 154 TEASTGEVISAITSDIIVVQDALSEKVGNFMHYISRFLGGFIIGFARVWQISLVTLSIVPLIALAGGMYAYVTIGLIARV 233 (1077)
Q Consensus 154 ~~~~~G~i~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~l~~~pl~~~~~~~~~~~~~~~~~~~ 233 (1077)
..|+=..-+ +|.++++.+++..-+..+.+.-.+++-+.++|.+.++++++.++...+++.+.++--+..++..++.
T Consensus 115 ---~~g~~~Q~L-rDL~qvR~Fltg~g~~A~fDaPW~P~yl~v~fl~Hp~lG~~a~~ga~iLv~la~ln~~~t~~p~~eA 190 (580)
T COG4618 115 ---GSGDGLQPL-RDLDQVRQFLTGTGLTAFFDAPWMPLYLAVIFLFHPWLGLIALAGAIILVVLALLNERATRKPLKEA 190 (580)
T ss_pred ---CCCccccch-hhHHHHHHHHcCCCcchhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHH
Confidence 233322233 7999999999774444444443456677788999999999999888888888888888888888888
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001438 234 RKSYVKAGEIAEEVIGNVRTVQAFAGEDKAVKVYKEALSNTYKYGRKAGLAKGLGLGSMHCVLFLSWSLLVWYVSVVVHK 313 (1077)
Q Consensus 234 ~~~~~~~~~~~~E~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~ 313 (1077)
.+...+.+..++-+..|..+|++.|..+...++|.+.+.++.+...+.+-..+....+.-.+-.+....++..|++++.+
T Consensus 191 ~~~~~~~~~~~~a~~RNAEvi~AMGM~~~l~~rW~~~~~~~L~~~~~asd~~~~~~~~Sr~~Rm~lQs~iLg~GA~Lvi~ 270 (580)
T COG4618 191 SEASIRANQLADATLRNAEVIEAMGMLGNLAKRWGRFNAAYLSAQERASDRNGAFGALSRALRMALQSAVLGLGAWLVIK 270 (580)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcceeeEEc
Confidence 88888899999999999999999999999999999999999998888877777777777777777778888999999999
Q ss_pred cccCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhccCcccccccccCCCCCCCcccEEEEeEEEEcCC
Q 001438 314 HISNGGESFTTMLNVVIAGLSLGQAAPDITAFIRAKAAAYPIFEMIERDTMSKASSKTGRKLDKLSGHIEFKDVSFCYPS 393 (1077)
Q Consensus 314 ~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~ 393 (1077)
|++|+|.+++.-...-....|+-.....+.++..++.|.+|+.+++...|...+ .-+.+..++.+.++++++.=|+
T Consensus 271 ge~t~G~mIA~SIl~gRaLaPid~aI~~Wkq~~~Ar~s~~Rl~~lL~~~p~~~~----~m~LP~P~g~L~Ve~l~~~PPg 346 (580)
T COG4618 271 GEITPGMMIAGSILSGRALAPIDLAIANWKQFVAARQSYKRLNELLAELPAAAE----RMPLPAPQGALSVERLTAAPPG 346 (580)
T ss_pred CcCCcchhhHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHhCccccC----CCCCCCCCceeeEeeeeecCCC
Confidence 999999988764444444567778888899999999999999999987654322 2234556789999999997665
Q ss_pred CCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHHHhhheeEEccCCCccccc
Q 001438 394 RPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIGLVNQEPALFATT 473 (1077)
Q Consensus 394 ~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~t 473 (1077)
. ++++++|+||++++||.+|||||||||||||.++|.|..+|.+|.|.+||-|+++++.+.+-++|||.||+..||+||
T Consensus 347 ~-~~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p~~G~VRLDga~l~qWd~e~lG~hiGYLPQdVeLF~GT 425 (580)
T COG4618 347 Q-KKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQWDREQLGRHIGYLPQDVELFDGT 425 (580)
T ss_pred C-CCcceecceeEecCCceEEEECCCCccHHHHHHHHHcccccCCCcEEecchhhhcCCHHHhccccCcCcccceecCCc
Confidence 4 578999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCCCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHHhccCCCEEEEeCcCCCCCH
Q 001438 474 IRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDA 553 (1077)
Q Consensus 474 i~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~~~p~illlDEpts~lD~ 553 (1077)
|.|||.-..++.+.+++.+|+++++.||.|.++|+||||.||+.|..|||||||||+||||+|.||.+++||||-|+||.
T Consensus 426 IaeNIaRf~~~~d~~kIieAA~lAgvHelIl~lP~GYdT~iG~~G~~LSgGQRQRIaLARAlYG~P~lvVLDEPNsNLD~ 505 (580)
T COG4618 426 IAENIARFGEEADPEKVIEAARLAGVHELILRLPQGYDTRIGEGGATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDS 505 (580)
T ss_pred HHHHHHhccccCCHHHHHHHHHHcChHHHHHhCcCCccCccCCCCCCCCchHHHHHHHHHHHcCCCcEEEecCCCCCcch
Confidence 99999765667889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHh-CCCeEEEEccCchhHhhcCEEEEEECCEEEEecChhHHhcC
Q 001438 554 ESENSVQEALDRVM-VGRTTVVVAHRLSTIRNADVIAVVQGRKIVKTGSHEELISN 608 (1077)
Q Consensus 554 ~~~~~i~~~l~~~~-~~~t~i~vtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~ 608 (1077)
+.|..+.++|...+ +|.|+|+||||.+.+..+|+|++|++|++...|+.+|++++
T Consensus 506 ~GE~AL~~Ai~~~k~rG~~vvviaHRPs~L~~~Dkilvl~~G~~~~FG~r~eVLa~ 561 (580)
T COG4618 506 EGEAALAAAILAAKARGGTVVVIAHRPSALASVDKILVLQDGRIAAFGPREEVLAK 561 (580)
T ss_pred hHHHHHHHHHHHHHHcCCEEEEEecCHHHHhhcceeeeecCChHHhcCCHHHHHHH
Confidence 99999999998875 69999999999999999999999999999999999998865
|
|
| >PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-65 Score=613.85 Aligned_cols=461 Identities=18% Similarity=0.221 Sum_probs=364.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhccCCChhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001438 115 LFSSWIEVSCWMYTGERQAAKMRMAYLRSMLNQDISLFDTEASTGEVISAITSDIIVVQDALSEKVGNFMHYISRFLGGF 194 (1077)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~f~~~~~~G~i~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~ 194 (1077)
.++.+++.+...+.+.++..++|.+++++++++|+++|++ .++|++++|+++|++.+...+. .++.++..++.+++.+
T Consensus 62 ~~~~~~~~~~~~~~~~~~~~~lR~~l~~~ll~~~~~~~~~-~~~g~~lsrl~~dv~~i~~~~~-~l~~~~~~~~~~i~~~ 139 (547)
T PRK10522 62 MAVTLGSQLALTTLGHHFVYRLRSEFIKRILDTHVERIEQ-LGSASLLASLTSDVRNITIAFV-RLPELVQGIILTLGSA 139 (547)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhc-cCccchHHHHHhhHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 4466677778888899999999999999999999999998 4899999999999999998765 4677888888888899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccH---HHHHHHHHHHH
Q 001438 195 IIGFARVWQISLVTLSIVPLIALAGGMYAYVTIGLIARVRKSYVKAGEIAEEVIGNVRTVQAFAGE---DKAVKVYKEAL 271 (1077)
Q Consensus 195 ~~~~~~~~~l~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~Ik~~~~e---~~~~~~~~~~~ 271 (1077)
+++++++|.+++++++++|+.+++..++.++.++..++.++..++..+.+.|.++|+++++ ++.+ +.+.+++++..
T Consensus 140 ~~l~~~~~~l~li~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~i~-~~~~~~~~~~~~~~~~~~ 218 (547)
T PRK10522 140 AYLAWLSPKMLLVTAIWMAVTIWGGFVLVARVYKHMATLRETEDKLYNDYQTVLEGRKELT-LNRERAEYVFENEYEPDA 218 (547)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhh-ccHHHHHHHHHHHHhHHH
Confidence 9999999999999999999988888888888888888888899999999999999999996 4433 46778888877
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 001438 272 SNTYKYGRKAGLAKGLGLGSMHCVLFLSWSLLVWYVSVVVHKHISNGGESFTTMLNVVIAGLSLGQAAPDITAFIRAKAA 351 (1077)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s 351 (1077)
++..+...+..........+......+...+.+++++.. +..+.+....+..+......|+..+...+..+++++.+
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~a 295 (547)
T PRK10522 219 QEYRHHIIRADTFHLSAVNWSNIMMLGAIGLVFYMANSL---GWADTNVAATYSLTLLFLRTPLLSAVGALPTLLSAQVA 295 (547)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777666555554444333322222222222233333321 11222322222222333456888888889999999999
Q ss_pred HHHHHHHhccCcccccccccCCCCCCCcccEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHh
Q 001438 352 AYPIFEMIERDTMSKASSKTGRKLDKLSGHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIE 431 (1077)
Q Consensus 352 ~~ri~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~ 431 (1077)
.+|+.++++.+++.+... ....+..+.|+++||+|+|+++ .++|+|+||++++||+++|+||||||||||+++|+
T Consensus 296 ~~ri~~l~~~~~~~~~~~---~~~~~~~~~i~~~~v~f~y~~~--~~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~ 370 (547)
T PRK10522 296 FNKLNKLALAPYKAEFPR---PQAFPDWQTLELRNVTFAYQDN--GFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLT 370 (547)
T ss_pred HHHHHHHhcccccccccc---ccccCcCceEEEEEEEEEeCCC--CeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 999999876433211111 1111113579999999999743 36899999999999999999999999999999999
Q ss_pred cccCCCccEEEECCeeCCCCCHHHHhhheeEEccCCCcccccHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHhcCccchh
Q 001438 432 RFYEPLSGEILLDGNNIKGLDLKWLRQQIGLVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFE 511 (1077)
Q Consensus 432 g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~ 511 (1077)
|+|+|++|+|.+||+++++++.+++|++++||||||.+|++|++|| + ++.+++++.++++. ++.+.+
T Consensus 371 g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~n---~-~~~~~~~~~~~~~~---------~~l~~~ 437 (547)
T PRK10522 371 GLYQPQSGEILLDGKPVTAEQPEDYRKLFSAVFTDFHLFDQLLGPE---G-KPANPALVEKWLER---------LKMAHK 437 (547)
T ss_pred CCCCCCCeEEEECCEECCCCCHHHHhhheEEEecChhHHHHhhccc---c-CchHHHHHHHHHHH---------cCCchh
Confidence 9999999999999999999999999999999999999999999999 2 33445555444443 333333
Q ss_pred hhhcC---CCCCCChHHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh--CCCeEEEEccCchhHhhcC
Q 001438 512 TQVGE---RGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVM--VGRTTVVVAHRLSTIRNAD 586 (1077)
Q Consensus 512 t~~~~---~g~~LSgGqkqri~lARal~~~p~illlDEpts~lD~~~~~~i~~~l~~~~--~~~t~i~vtH~~~~~~~~d 586 (1077)
+..++ +|.+||||||||++||||++++|+++|||||||+||+++++.+.+.+.+.. +++|+|+||||++.++.||
T Consensus 438 ~~~~~~~~~G~~LSgGq~qRl~lARal~~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tvi~itH~~~~~~~~d 517 (547)
T PRK10522 438 LELEDGRISNLKLSKGQKKRLALLLALAEERDILLLDEWAADQDPHFRREFYQVLLPLLQEMGKTIFAISHDDHYFIHAD 517 (547)
T ss_pred hhccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEEechHHHHhCC
Confidence 33333 378999999999999999999999999999999999999999999987653 4899999999999999999
Q ss_pred EEEEEECCEEEEe
Q 001438 587 VIAVVQGRKIVKT 599 (1077)
Q Consensus 587 ~i~~l~~G~i~~~ 599 (1077)
+|++|++|+++|.
T Consensus 518 ~i~~l~~G~i~e~ 530 (547)
T PRK10522 518 RLLEMRNGQLSEL 530 (547)
T ss_pred EEEEEECCEEEEe
Confidence 9999999999987
|
|
| >TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-62 Score=595.50 Aligned_cols=531 Identities=15% Similarity=0.099 Sum_probs=421.4
Q ss_pred hHHHHHHhhchhhH----HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcccCCchhhhhHHHHHHHHHHHHHHHHHHH
Q 001438 42 SLFKLFAFADFYDY----ILMSLGSIGACVHGVSVPVFFIFFGKLINIIGLAYLFPKTASHKVAKYSLDFVYLSVAILFS 117 (1077)
Q Consensus 42 ~~~~l~~~~~~~~~----~~~~~~~~~~~~~~~~~p~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (1077)
.+.++++++.++.+ ..+++.+++.++..++....+++.+.++|.+... +...+...+..+.+.+++..++..+.
T Consensus 78 ~~~~l~~~~~p~~~~~~~~~l~~~~~~~~~~t~~~l~~~~l~~~iid~l~~~--~~~~f~~~l~~~~l~~~~~~~~~~~~ 155 (659)
T TIGR00954 78 KLDFLLKILIPRVFCKETGLLILIAFLLVSRTYLSVYVATLDGQIESSIVRR--SPRNFAWILFKWFLIAPPASFINSAI 155 (659)
T ss_pred HHHHHHHHHcCcccchHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhc--CHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35556666655433 3455555566666667777778889999986421 11111111222333333344444555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhccCCChhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001438 118 SWIEVSCWMYTGERQAAKMRMAYLRSMLNQDISLFDTEASTGEVISAITSDIIVVQDALSEKVGNFMHYISRFLGGFIIG 197 (1077)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~f~~~~~~G~i~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (1077)
.++..++......++..++|..++++....++.+||+ ++|++++|+++|++.+.+.+...+..++..++.+++.++.+
T Consensus 156 ~~~~~~~~~~~r~~l~~~l~~~~~~~~~~~~~~~~d~--~~g~~~srlt~Dv~~i~~~~~~~~~~l~~~~~~ii~~~~~L 233 (659)
T TIGR00954 156 KYLLKELKLRFRVRLTRYLYSKYLSGFTFYKVSNLDS--RIQNPDQLLTQDVEKFCDSVVELYSNLTKPILDVILYSFKL 233 (659)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCceEEeccCCC--CCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666666666677788888888888877788888885 57999999999999999999999999999999998888877
Q ss_pred HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHH
Q 001438 198 FA-RVWQISLVTLSIVPLIALAGGMYAYVTIGLIARVRKSYVKAGEIAEEVIGNVRTVQAFAGEDKAVKVYKEALSNTYK 276 (1077)
Q Consensus 198 ~~-~~~~l~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~ 276 (1077)
+. .+|.+++++++.+|+.+++..++.+.+.+..++.++..++.....+|.++|+++||+|+.|+.+.+++++..++..+
T Consensus 234 ~~~~~~~l~l~~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~I~~~~~e~~e~~~~~~~~~~l~~ 313 (659)
T TIGR00954 234 LTALGSVGPAGLFAYLFATGVVLTKLRPPIGKLTVEEQALEGEYRYVHSRLIMNSEEIAFYQGNKVEKETVMSSFYRLVE 313 (659)
T ss_pred HHhcchHHHHHHHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 75 99999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHH-h----cccCHHHHHHHHHH----HHHHHHHHHHhHHHHHHH
Q 001438 277 YGRKAGLAKGLGLGSMHCVLFL--SWSLLVWYVSVVVH-K----HISNGGESFTTMLN----VVIAGLSLGQAAPDITAF 345 (1077)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~~~v~-~----~~~~~g~~~~~~~~----~~~~~~~l~~~~~~~~~~ 345 (1077)
...+..++.+...++..++... ..+..++.|...+. . |.+|.|.+++.+.. +.....|+..+...+..+
T Consensus 314 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~~~~~~~~~g~~t~g~~~~~f~~~~~~~~~l~~~~~~l~~~~~~i 393 (659)
T TIGR00954 314 HLNLIIKFRFSYGFLDNIVAKYTWSAVGLVAVSIPIFDKTHPAFLEMSEEELMQEFYNNGRLLLKAADALGRLMLAGRDM 393 (659)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999888888877777666542 22233333342332 2 67888876653322 334466888888899999
Q ss_pred HHHHHHHHHHHHHhccCcccccc-------cc-cC--------------CCCCCCcccEEEEeEEEEcCCCCCcccccce
Q 001438 346 IRAKAAAYPIFEMIERDTMSKAS-------SK-TG--------------RKLDKLSGHIEFKDVSFCYPSRPDVAIFDKF 403 (1077)
Q Consensus 346 ~~~~~s~~ri~~~l~~~~~~~~~-------~~-~~--------------~~~~~~~~~i~~~~v~~~y~~~~~~~~l~~i 403 (1077)
+++.++.+|++++++.+++.+.. +. .+ .......+.|+++|++|+|+++ .++|+|+
T Consensus 394 ~~~~~~~~Ri~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nv~~~~~~~--~~il~~i 471 (659)
T TIGR00954 394 TRLAGFTARVDTLLQVLDDVKSGNFKRPRVEEIESGREGGRNSNLVPGRGIVEYQDNGIKFENIPLVTPNG--DVLIESL 471 (659)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccccccccccccccccccccccccccccccccCCCeEEEEeeEEECCCC--Ceeeecc
Confidence 99999999999999754321100 00 00 0011123569999999999743 3689999
Q ss_pred eEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHHHhhheeEEccCCCcccccHHHHHhcCC-
Q 001438 404 CLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIGLVNQEPALFATTIRENILYGK- 482 (1077)
Q Consensus 404 sl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~~ni~~~~- 482 (1077)
||++++||+++|+||||||||||+++|+|+++|++|+|.+++ |++++||||+|++|++|++|||.++.
T Consensus 472 sl~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~~~~G~i~~~~-----------~~~i~~v~Q~~~l~~~tv~eni~~~~~ 540 (659)
T TIGR00954 472 SFEVPSGNHLLICGPNGCGKSSLFRILGELWPVYGGRLTKPA-----------KGKLFYVPQRPYMTLGTLRDQIIYPDS 540 (659)
T ss_pred eEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEeecC-----------CCcEEEECCCCCCCCcCHHHHHhcCCC
Confidence 999999999999999999999999999999999999999874 45799999999999999999999874
Q ss_pred ------CCCCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHH
Q 001438 483 ------DDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESE 556 (1077)
Q Consensus 483 ------~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~~~p~illlDEpts~lD~~~~ 556 (1077)
+..+++++.++++..++.++++. |.|+||..+ .+.+||||||||++||||++++|+++|||||||+||++++
T Consensus 541 ~~~~~~~~~~~~~i~~~l~~~~l~~~~~~-~~g~~~~~~-~~~~LSgGqkQRl~iARal~~~p~illLDEpts~LD~~~~ 618 (659)
T TIGR00954 541 SEDMKRRGLSDKDLEQILDNVQLTHILER-EGGWSAVQD-WMDVLSGGEKQRIAMARLFYHKPQFAILDECTSAVSVDVE 618 (659)
T ss_pred hhhhhccCCCHHHHHHHHHHcCCHHHHhh-cCCcccccc-cccCCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHH
Confidence 23456788888999998888877 999999876 5779999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCeEEEEccCchhHhhcCEEEEEEC
Q 001438 557 NSVQEALDRVMVGRTTVVVAHRLSTIRNADVIAVVQG 593 (1077)
Q Consensus 557 ~~i~~~l~~~~~~~t~i~vtH~~~~~~~~d~i~~l~~ 593 (1077)
+.+.+.+++. ++|+|+||||++.++.||+|++|++
T Consensus 619 ~~l~~~l~~~--~~tvI~isH~~~~~~~~d~il~l~~ 653 (659)
T TIGR00954 619 GYMYRLCREF--GITLFSVSHRKSLWKYHEYLLYMDG 653 (659)
T ss_pred HHHHHHHHHc--CCEEEEEeCchHHHHhCCEEEEEeC
Confidence 9999998763 8999999999999999999999974
|
|
| >KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-61 Score=551.17 Aligned_cols=391 Identities=27% Similarity=0.450 Sum_probs=368.3
Q ss_pred hHHHHHhhcccchHHHHHHHHHHHHHhhHHhHHHHHHHHHHHhhccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001438 683 SAIKLYSMVRPDWTYGVCGTICAIIAGAQMPLFALGVSQALVAYYMDWDTTQREVKKITILFCCAAVITVIVHAIEHLSF 762 (1077)
Q Consensus 683 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 762 (1077)
-.++++.+.+|+|+++..|..+.++........|...+++++.++.. .............+.++.++..++.+++.+++
T Consensus 134 ~~~rl~~l~~~~~~~l~~a~~~l~vss~~~~~iP~~~G~~id~~~~~-~~~~~~~~~~~~~l~~l~~~~a~~~~~r~~~~ 212 (716)
T KOG0058|consen 134 LLKRLLGLLKPEWKWLVAAFVLLLVSSLINMFIPYYLGKLIDTISEG-DDSADALKRACTILLGLFLIGALANAIRGGLL 212 (716)
T ss_pred HHHHHHHHhchhHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhc-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56799999999999999999999999888889999999999887761 11123344456677788888999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCccccccccCCchhHHHHHhhcHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhHHH
Q 001438 763 GIMGERLTLRVREKMFSAILSNEIGWFDEMDNSSSILASRLESDATLLRTIVVDRSTILIQNFGLVTASFVIAFILNWRI 842 (1077)
Q Consensus 763 ~~~~~~~~~~Lr~~l~~~llr~p~~FFD~~~~~~G~IlnR~s~D~~~i~~~l~~~l~~~~~~~~~~~~~i~i~~~~~w~l 842 (1077)
.++++++..++|.++|++++||+++|||. |.+|+|++|+++|+..+...++..+...+++.++.++++++|++++|+|
T Consensus 213 ~~a~~rv~~rlR~~lF~sil~QdiaFFD~--nktGeL~SRLtsD~~~vs~svs~nls~~lR~~~~~~g~~~~M~~~S~~L 290 (716)
T KOG0058|consen 213 QYAGERVVARLRTDLFRSLLRQDIAFFDE--NKTGELISRLTSDTQIVSNSVSQNLSDGLRNLVQGFGGLGFMFSLSWRL 290 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhcc--CCccHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHH
Confidence 99999999999999999999999999995 9999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhHHHHHHHcchHHHHHhcchHHHHHHHHHHhhhhhHHHHHHHHH
Q 001438 843 TLVVVATYPLIISGHISEKLFFQGYGGNLSKAYLKANMLAAEAVSNIRTVAAFCSEDKVLELYSRELVEPSKRSFIRGQI 922 (1077)
Q Consensus 843 ~l~~l~~~Pl~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Etl~Gi~tIrAf~~e~~~~~~f~~~~~~~~~~~~~~~~~ 922 (1077)
+++.+..+|++.+...++++++++.+++.|++..+++..+.|+++++||||+|++|+++.+||.+.+++..+...+.+..
T Consensus 291 tlv~~i~~P~v~~~~~~yG~~~rklS~~~Q~a~A~a~~vaeE~ls~~rTVRsfa~E~~E~~ry~~~l~~~~~i~~k~a~a 370 (716)
T KOG0058|consen 291 TLVTLIVVPIVALVAKIYGKYLRKLSKQTQDALARANQVAEEVLSAMRTVRSFAAEEQEVKRYNKKLREVLKLSKKEAVA 370 (716)
T ss_pred HHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHcCCCC
Q 001438 923 AGIFYGISQFFIFSSYGLALWYGSVLMGKELASFKSVMKSFMVLIVTALAMGETLALVPDLLKGNQMAASVFEVLDRKTQ 1002 (1077)
Q Consensus 923 ~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~l~~~~~ 1002 (1077)
.+.+++.++.+.......++|||+.++..|.++.+++.+|++|....+.++..+..++++++++..|++|+|+++|++|.
T Consensus 371 ~~~f~~~~~~~~~~~~~siL~~Gg~Lv~~g~mt~g~L~sFllY~~~~g~sl~~ls~~ys~lmkgvGAs~rvFel~dr~P~ 450 (716)
T KOG0058|consen 371 YGIFFGSTNLLGNLAVLSILFYGGHLVLTGSLTSGALSSFLLYQVQLGSSLSGLSSFYSELMKGVGASERVFELMDRKPR 450 (716)
T ss_pred hhHhHhHHHHHHhHHHHHHHHhccchhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCcccc-cccccEEEeeeeeeCCCCCcccccccceeeeeCCCEEEEECCCCCCHHHHHHHHhhccCCCCCCC
Q 001438 1003 VIGDIGEELT-NVEGTIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKA 1077 (1077)
Q Consensus 1003 ~~~~~~~~~~-~~~G~I~f~nVsf~Y~~~~~~~VLk~vsl~I~~GekVaIVGrTGsGKSTLi~lL~Rfyd~~~G~i 1077 (1077)
++.. +...| ..+|.|+|+||+|+||+||+.+||||+||+|+|||+||+||||||||||+++||+|||||++|+|
T Consensus 451 i~~~-G~~~p~~~~G~IeF~~VsFaYP~Rp~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~PtsG~I 525 (716)
T KOG0058|consen 451 IPLT-GTLAPDHLQGVIEFEDVSFAYPTRPDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPTSGRI 525 (716)
T ss_pred CCCC-CccccccccceEEEEEeeeecCCCCCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeE
Confidence 9876 44333 68999999999999999999999999999999999999999999999999999999999999986
|
|
| >COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-52 Score=412.31 Aligned_cols=221 Identities=33% Similarity=0.552 Sum_probs=190.9
Q ss_pred cEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCC-CCHHHHhhh
Q 001438 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKG-LDLKWLRQQ 459 (1077)
Q Consensus 381 ~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~-~~~~~~r~~ 459 (1077)
.|+++|++++|++ ..+|+|||++|++||.++|+||||||||||+++|.|+.+|++|+|.+||.++.. .+...+|++
T Consensus 2 mi~i~~l~K~fg~---~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~R~~ 78 (240)
T COG1126 2 MIEIKNLSKSFGD---KEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRK 78 (240)
T ss_pred eEEEEeeeEEeCC---eEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHHHHh
Confidence 4899999999974 469999999999999999999999999999999999999999999999987743 378889999
Q ss_pred eeEEccCCCcccc-cHHHHHhcCC---CCCCHHHH-HHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHH
Q 001438 460 IGLVNQEPALFAT-TIRENILYGK---DDATMEEI-TRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRA 534 (1077)
Q Consensus 460 i~~v~Q~~~lf~~-ti~~ni~~~~---~~~~~~~~-~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARa 534 (1077)
+|+|+|+..||+- |+.||+.++. ...+.++. ..|.+ + ++.. |+.......+.+||||||||+|||||
T Consensus 79 vGmVFQ~fnLFPHlTvleNv~lap~~v~~~~k~eA~~~A~~---l---L~~V--GL~~ka~~yP~qLSGGQqQRVAIARA 150 (240)
T COG1126 79 VGMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKALE---L---LEKV--GLADKADAYPAQLSGGQQQRVAIARA 150 (240)
T ss_pred cCeecccccccccchHHHHHHhhhHHHcCCCHHHHHHHHHH---H---HHHc--CchhhhhhCccccCcHHHHHHHHHHH
Confidence 9999999999987 9999999874 12222222 22222 2 2222 44445566788999999999999999
Q ss_pred hccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCeEEEEccCchhHhh-cCEEEEEECCEEEEecChhHHhcCCCch
Q 001438 535 IVKNPSILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELISNPNSA 612 (1077)
Q Consensus 535 l~~~p~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~~~~ 612 (1077)
|+.+|+++|+|||||||||+...++.+.++++. .|.|.|+|||.+.+++. ||||+.|++|+|+++|+++++..++...
T Consensus 151 LaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~FAr~VadrviFmd~G~iie~g~p~~~f~~p~~~ 230 (240)
T COG1126 151 LAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGFAREVADRVIFMDQGKIIEEGPPEEFFDNPKSE 230 (240)
T ss_pred HcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhHHHHHhhheEEEeeCCEEEEecCHHHHhcCCCCH
Confidence 999999999999999999999999999999875 68999999999999987 9999999999999999999999886544
|
|
| >COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-50 Score=419.47 Aligned_cols=226 Identities=36% Similarity=0.597 Sum_probs=194.3
Q ss_pred EEEEeEEEEcCCC--CCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHH---HH
Q 001438 382 IEFKDVSFCYPSR--PDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLK---WL 456 (1077)
Q Consensus 382 i~~~~v~~~y~~~--~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~---~~ 456 (1077)
|++++|++.|+.. ....+|+|+||+|++||+.||+|+||+|||||++++.++-.|++|+|.+||+|+..++.. .+
T Consensus 2 I~l~~vsK~~~~~~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr~~ 81 (339)
T COG1135 2 IELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQL 81 (339)
T ss_pred eEEEeeeeeeccCCCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHHHH
Confidence 7999999999853 235689999999999999999999999999999999999999999999999999887754 56
Q ss_pred hhheeEEccCCCccc-ccHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHHh
Q 001438 457 RQQIGLVNQEPALFA-TTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAI 535 (1077)
Q Consensus 457 r~~i~~v~Q~~~lf~-~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal 535 (1077)
|++||+++|++.|++ .||.||++|+..-....+-+...+..++.+++ |+....+..+.+||||||||++|||||
T Consensus 82 R~~IGMIFQhFnLLssrTV~~NvA~PLeiag~~k~ei~~RV~elLelV-----gL~dk~~~yP~qLSGGQKQRVaIARAL 156 (339)
T COG1135 82 RQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQRVAELLELV-----GLSDKADRYPAQLSGGQKQRVAIARAL 156 (339)
T ss_pred HhhccEEeccccccccchHHhhhhhhHhhcCCCHHHHHHHHHHHHHHc-----CChhhhccCchhcCcchhhHHHHHHHH
Confidence 788999999999998 59999999986433322222333444455544 333445667889999999999999999
Q ss_pred ccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh--CCCeEEEEccCchhHhh-cCEEEEEECCEEEEecChhHHhcCCCch
Q 001438 536 VKNPSILLLDEATSALDAESENSVQEALDRVM--VGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELISNPNSA 612 (1077)
Q Consensus 536 ~~~p~illlDEpts~lD~~~~~~i~~~l~~~~--~~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~~~~ 612 (1077)
+.+|+|||.|||||||||++.+.|.+.|++.. -|-|+++|||.++.++. |||+.||++|+++|+|+..|+..+|...
T Consensus 157 a~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm~Vvk~ic~rVavm~~G~lvE~G~v~~vF~~Pk~~ 236 (339)
T COG1135 157 ANNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEMEVVKRICDRVAVLDQGRLVEEGTVSEVFANPKHA 236 (339)
T ss_pred hcCCCEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHhhhheEeeCCEEEEeccHHHhhcCcchH
Confidence 99999999999999999999999999998864 48999999999999987 9999999999999999999999887544
|
|
| >COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-50 Score=402.79 Aligned_cols=226 Identities=37% Similarity=0.582 Sum_probs=194.5
Q ss_pred EEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHHHhhhee
Q 001438 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIG 461 (1077)
Q Consensus 382 i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 461 (1077)
|+|+|||++|.+ ..+++|+||+|++||+++++|||||||||++++|.|+++|++|+|++||+++++++..++|++||
T Consensus 2 I~~~nvsk~y~~---~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~LRr~IG 78 (309)
T COG1125 2 IEFENVSKRYGN---KKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRRKIG 78 (309)
T ss_pred ceeeeeehhcCC---ceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHHHHhhh
Confidence 799999999973 46899999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEccCCCcccc-cHHHHHhcCCC--CCCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHHhccC
Q 001438 462 LVNQEPALFAT-TIRENILYGKD--DATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKN 538 (1077)
Q Consensus 462 ~v~Q~~~lf~~-ti~~ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~~~ 538 (1077)
||-|+.-||+- ||.|||.+-.. .++.+++. .+..++.+.+ .|+.. ......+.+|||||+|||.+||||+.+
T Consensus 79 YviQqigLFPh~Tv~eNIa~VP~L~~w~k~~i~--~r~~ELl~lv-gL~p~--~~~~RyP~eLSGGQQQRVGv~RALAad 153 (309)
T COG1125 79 YVIQQIGLFPHLTVAENIATVPKLLGWDKERIK--KRADELLDLV-GLDPS--EYADRYPHELSGGQQQRVGVARALAAD 153 (309)
T ss_pred hhhhhcccCCCccHHHHHHhhhhhcCCCHHHHH--HHHHHHHHHh-CCCHH--HHhhcCchhcCcchhhHHHHHHHHhcC
Confidence 99999999976 99999987532 23333332 2233344433 23221 234567889999999999999999999
Q ss_pred CCEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCeEEEEccCchhH-hhcCEEEEEECCEEEEecChhHHhcCCCchHHH
Q 001438 539 PSILLLDEATSALDAESENSVQEALDRVMV--GRTTVVVAHRLSTI-RNADVIAVVQGRKIVKTGSHEELISNPNSAYAA 615 (1077)
Q Consensus 539 p~illlDEpts~lD~~~~~~i~~~l~~~~~--~~t~i~vtH~~~~~-~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~ 615 (1077)
|+|+|+|||++||||.+++.+++.+.++.+ ++|+|+|||+++.. +-+|||.+|++|+|++.++|++++++|...|-+
T Consensus 154 P~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDidEA~kLadri~vm~~G~i~Q~~~P~~il~~Pan~FV~ 233 (309)
T COG1125 154 PPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDIDEALKLADRIAVMDAGEIVQYDTPDEILANPANDFVE 233 (309)
T ss_pred CCeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHHHHHhhhceEEEecCCeEEEeCCHHHHHhCccHHHHH
Confidence 999999999999999999999999988753 89999999999975 569999999999999999999999987665543
|
|
| >COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-49 Score=387.93 Aligned_cols=221 Identities=33% Similarity=0.547 Sum_probs=197.3
Q ss_pred ccEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCc-----cEEEECCeeCCC--CC
Q 001438 380 GHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLS-----GEILLDGNNIKG--LD 452 (1077)
Q Consensus 380 ~~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~-----G~i~~~g~~~~~--~~ 452 (1077)
..++++|+++.|++ +.+|+|||++|++++++|++|||||||||+++++.|+.+..+ |+|.++|+++.+ .+
T Consensus 6 ~~~~~~~l~~yYg~---~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d 82 (253)
T COG1117 6 PAIEVRDLNLYYGD---KHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVD 82 (253)
T ss_pred ceeEecceeEEECc---hhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCC
Confidence 45899999999973 469999999999999999999999999999999999998875 999999999976 47
Q ss_pred HHHHhhheeEEccCCCcccccHHHHHhcCCCCC------CHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHH
Q 001438 453 LKWLRQQIGLVNQEPALFATTIRENILYGKDDA------TMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQK 526 (1077)
Q Consensus 453 ~~~~r~~i~~v~Q~~~lf~~ti~~ni~~~~~~~------~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqk 526 (1077)
..++|++||.|+|.|..|+.||+||+.||.... -++-++.+++.+.+++.++ + .+.+.+..|||||+
T Consensus 83 ~~~lRr~vGMVFQkPnPFp~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVK---D----rL~~sa~~LSGGQQ 155 (253)
T COG1117 83 VVELRRRVGMVFQKPNPFPMSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVK---D----RLHKSALGLSGGQQ 155 (253)
T ss_pred HHHHHHHheeeccCCCCCCchHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhH---H----HhhCCccCCChhHH
Confidence 889999999999999999999999999995321 1234667788887776543 2 34567888999999
Q ss_pred HHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEccCchhHhh-cCEEEEEECCEEEEecChhHH
Q 001438 527 QRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEEL 605 (1077)
Q Consensus 527 qri~lARal~~~p~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l 605 (1077)
||+||||||.-+|+|||||||||||||.+..+|.+.|.+++++-|+|+|||+++...+ +|+..++.+|+++|.|+.+++
T Consensus 156 QRLcIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk~~yTIviVTHnmqQAaRvSD~taFf~~G~LvE~g~T~~i 235 (253)
T COG1117 156 QRLCIARALAVKPEVLLMDEPTSALDPISTLKIEELITELKKKYTIVIVTHNMQQAARVSDYTAFFYLGELVEFGPTDKI 235 (253)
T ss_pred HHHHHHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHHhccEEEEEeCCHHHHHHHhHhhhhhcccEEEEEcCHHhh
Confidence 9999999999999999999999999999999999999999999999999999998765 999999999999999999999
Q ss_pred hcCCC
Q 001438 606 ISNPN 610 (1077)
Q Consensus 606 ~~~~~ 610 (1077)
..+|.
T Consensus 236 F~~P~ 240 (253)
T COG1117 236 FTNPK 240 (253)
T ss_pred hcCcc
Confidence 98764
|
|
| >cd03289 ABCC_CFTR2 The CFTR subfamily domain 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-48 Score=426.00 Aligned_cols=237 Identities=26% Similarity=0.435 Sum_probs=218.4
Q ss_pred ccEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHHHhhh
Q 001438 380 GHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQ 459 (1077)
Q Consensus 380 ~~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~ 459 (1077)
|.|+++|++++|++. +.++|+|+||+|++||+++|+||||||||||+++|+|+++ .+|+|++||.++..++..++|++
T Consensus 1 g~i~~~nls~~~~~~-~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~~G~I~i~g~~i~~~~~~~lr~~ 78 (275)
T cd03289 1 GQMTVKDLTAKYTEG-GNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGDIQIDGVSWNSVPLQKWRKA 78 (275)
T ss_pred CeEEEEEEEEEeCCC-CCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEhhhCCHHHHhhh
Confidence 468999999999743 2468999999999999999999999999999999999998 78999999999999999999999
Q ss_pred eeEEccCCCcccccHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHHhccCC
Q 001438 460 IGLVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNP 539 (1077)
Q Consensus 460 i~~v~Q~~~lf~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~~~p 539 (1077)
|+|+||+|.+|++|++||+.... ..+.++++++++..++.+++..+|+++++.++++|.+||||||||++||||++++|
T Consensus 79 i~~v~q~~~lf~~tv~~nl~~~~-~~~~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRall~~p 157 (275)
T cd03289 79 FGVIPQKVFIFSGTFRKNLDPYG-KWSDEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKA 157 (275)
T ss_pred EEEECCCcccchhhHHHHhhhcc-CCCHHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCC
Confidence 99999999999999999996332 24567888889888888999999999999999999999999999999999999999
Q ss_pred CEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEccCchhHhhcCEEEEEECCEEEEecChhHHhcCCCchHHHHHHH
Q 001438 540 SILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRNADVIAVVQGRKIVKTGSHEELISNPNSAYAALVQL 619 (1077)
Q Consensus 540 ~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~vtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~ 619 (1077)
+|+||||||++||+.+++.+++.|++..+++|+|+|||+++.+..||||++|++|++++.|++++++++ .+.|++++..
T Consensus 158 ~illlDEpts~LD~~~~~~l~~~l~~~~~~~tii~isH~~~~i~~~dri~vl~~G~i~~~g~~~~l~~~-~~~~~~~~~~ 236 (275)
T cd03289 158 KILLLDEPSAHLDPITYQVIRKTLKQAFADCTVILSEHRIEAMLECQRFLVIEENKVRQYDSIQKLLNE-KSHFKQAISP 236 (275)
T ss_pred CEEEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEECCHHHHHhCCEEEEecCCeEeecCCHHHHhhC-cHHHHHHHhh
Confidence 999999999999999999999999987778999999999999988999999999999999999999986 5777777754
Q ss_pred H
Q 001438 620 Q 620 (1077)
Q Consensus 620 ~ 620 (1077)
.
T Consensus 237 ~ 237 (275)
T cd03289 237 S 237 (275)
T ss_pred c
Confidence 3
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-47 Score=435.95 Aligned_cols=229 Identities=30% Similarity=0.514 Sum_probs=187.3
Q ss_pred cEEEEeEEEEcCCCCC-cccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCC----ccEEEECCeeCCCCCHHH
Q 001438 381 HIEFKDVSFCYPSRPD-VAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPL----SGEILLDGNNIKGLDLKW 455 (1077)
Q Consensus 381 ~i~~~~v~~~y~~~~~-~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~----~G~i~~~g~~~~~~~~~~ 455 (1077)
-++++|++..|..... ..+++||||+|.+||++||||+|||||||+.++|+|+.++. +|+|.++|.|+..++.+.
T Consensus 5 lL~V~nL~v~~~~~~~~~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~~ 84 (539)
T COG1123 5 LLEVENLTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSERE 84 (539)
T ss_pred eEEEeceEEEEecCCcceeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHHH
Confidence 5899999999975532 25899999999999999999999999999999999999987 899999999999888765
Q ss_pred Hh----hheeEEccCCC-cccc--cHHHHHh----cCCCCCCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChH
Q 001438 456 LR----QQIGLVNQEPA-LFAT--TIRENIL----YGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGG 524 (1077)
Q Consensus 456 ~r----~~i~~v~Q~~~-lf~~--ti~~ni~----~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgG 524 (1077)
+| +.|+||||+|. .+|- ||.+-|. ........+...++ .++.+.+ .+|+.... ...+.+||||
T Consensus 85 ~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~~~~~~ea~~~a---~elL~~V-gl~~~~~~--~~yPheLSGG 158 (539)
T COG1123 85 MRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSRAEARKRA---VELLEQV-GLPDPERR--DRYPHQLSGG 158 (539)
T ss_pred HHHhccccEEEEecCchhhcCchhhHHHHHHHHHHHhccccHHHHHHHH---HHHHHHc-CCCChhhh--ccCCcccCch
Confidence 53 46999999985 4543 6655553 22211112222222 2333333 46665443 5688999999
Q ss_pred HHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh--CCCeEEEEccCchhHhh-cCEEEEEECCEEEEecC
Q 001438 525 QKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVM--VGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGS 601 (1077)
Q Consensus 525 qkqri~lARal~~~p~illlDEpts~lD~~~~~~i~~~l~~~~--~~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~g~ 601 (1077)
||||+.||+||+.+|++||+||||++||+.++++|.+.|+++. .|.++|+|||++..+.+ ||||+||++|+++|.|+
T Consensus 159 ~rQRv~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g~a~l~ITHDl~Vva~~aDrv~Vm~~G~iVE~G~ 238 (539)
T COG1123 159 MRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLGVVAELADRVVVMYKGEIVETGP 238 (539)
T ss_pred HHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHHcCcEEEEEcCCHHHHHHhcCeEEEEECCEEEEecC
Confidence 9999999999999999999999999999999999999999875 58999999999999876 99999999999999999
Q ss_pred hhHHhcCCCchHHH
Q 001438 602 HEELISNPNSAYAA 615 (1077)
Q Consensus 602 ~~~l~~~~~~~~~~ 615 (1077)
.+++++++...|.+
T Consensus 239 ~~~i~~~p~hpYT~ 252 (539)
T COG1123 239 TEEILSNPQHPYTR 252 (539)
T ss_pred HHHHHhccCCcccH
Confidence 99999886655543
|
|
| >PRK14257 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-47 Score=427.87 Aligned_cols=232 Identities=28% Similarity=0.459 Sum_probs=197.7
Q ss_pred CCCcccEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccC-----CCccEEEECCeeCCC
Q 001438 376 DKLSGHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYE-----PLSGEILLDGNNIKG 450 (1077)
Q Consensus 376 ~~~~~~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~-----~~~G~i~~~g~~~~~ 450 (1077)
++..+.|+++|++++|++. ..++|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.+||+++..
T Consensus 75 ~~~~~~i~~~nls~~y~~~-~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~ 153 (329)
T PRK14257 75 FNHANVFEIRNFNFWYMNR-TKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRS 153 (329)
T ss_pred CCcCceEEEEeeEEEecCC-CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccc
Confidence 4556789999999999643 3469999999999999999999999999999999999996 579999999999974
Q ss_pred --CCHHHHhhheeEEccCCCcccccHHHHHhcCCC--CCCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHH
Q 001438 451 --LDLKWLRQQIGLVNQEPALFATTIRENILYGKD--DATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQK 526 (1077)
Q Consensus 451 --~~~~~~r~~i~~v~Q~~~lf~~ti~~ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqk 526 (1077)
.+...+|++++||||+|++|++|++|||.|+.. ..++++.+++... ...+. ..+++++++.+++++.+||||||
T Consensus 154 ~~~~~~~lr~~i~~v~q~~~~~~~ti~eNi~~~~~~~~~~~~~~~~~~~~-~~l~~-~~L~~~l~~~~~~~~~~LSgGqk 231 (329)
T PRK14257 154 KKISSLELRTRIGMVFQKPTPFEMSIFDNVAYGPRNNGINDRKILEKIVE-KSLKS-AALWDEVKDDLDKAGNALSGGQQ 231 (329)
T ss_pred cccchHhhhccEEEEecCCccCCCcHHHHHHhHHHhcCCChHHHHHHHHH-HHHHH-cCCcchhhhhhhCCcccCCHHHH
Confidence 445678899999999999999999999998642 1222332221111 11111 12556677889999999999999
Q ss_pred HHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEccCchhHhh-cCEEEEEECCEEEEecChhHH
Q 001438 527 QRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEEL 605 (1077)
Q Consensus 527 qri~lARal~~~p~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l 605 (1077)
||++||||++++|+||||||||++||+++.+.+.+.|+++.+++|+|+|||+++++.. ||||++|++|+|++.|+++++
T Consensus 232 qRl~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~~~Tii~iTH~l~~i~~~~Driivl~~G~i~e~g~~~~l 311 (329)
T PRK14257 232 QRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKKKYSIIIVTHSMAQAQRISDETVFFYQGWIEEAGETKTI 311 (329)
T ss_pred HHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999998888999999999999987 999999999999999999999
Q ss_pred hcCCC
Q 001438 606 ISNPN 610 (1077)
Q Consensus 606 ~~~~~ 610 (1077)
..++.
T Consensus 312 ~~~~~ 316 (329)
T PRK14257 312 FIHPK 316 (329)
T ss_pred hcCCC
Confidence 87654
|
|
| >COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-43 Score=373.12 Aligned_cols=465 Identities=19% Similarity=0.232 Sum_probs=346.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhccCCChhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001438 113 AILFSSWIEVSCWMYTGERQAAKMRMAYLRSMLNQDISLFDTEASTGEVISAITSDIIVVQDALSEKVGNFMHYISRFLG 192 (1077)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~f~~~~~~G~i~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~ 192 (1077)
+..+.+.+........++.+..++|.++.++++..|+.-+++ .++++++.++++|+..|. +-...++.+.+....+++
T Consensus 60 lf~~ss~is~lg~t~~gq~~I~klr~~~~~kil~tplerier-~~~~rlla~L~~Dvr~IS-f~~s~lp~~~qa~il~l~ 137 (546)
T COG4615 60 LFMVSSLISQLGLTTLGQHFIYKLRSEFIKKILDTPLERIER-LGSARLLAGLTSDVRNIS-FAFSRLPELVQAIILTLG 137 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH-hcccchhhhhccccccee-ehHhhhHHHHHHHHHHHH
Confidence 334445555566777899999999999999999999999998 599999999999999998 444677889999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHH--HHHHHHHHH
Q 001438 193 GFIIGFARVWQISLVTLSIVPLIALAGGMYAYVTIGLIARVRKSYVKAGEIAEEVIGNVRTVQAFAGED--KAVKVYKEA 270 (1077)
Q Consensus 193 ~~~~~~~~~~~l~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~Ik~~~~e~--~~~~~~~~~ 270 (1077)
+.+...++++++.++..+.+.+..+...+...+..+.....++..++..+..+-.++|-|..+...--. .+.+.|...
T Consensus 138 s~aYLayLSp~mf~l~vV~ivv~~~~~~~~m~rv~k~~~aare~ed~Lq~~y~~il~G~KEL~l~r~R~~~~h~~~~~~~ 217 (546)
T COG4615 138 SAAYLAYLSPKMFLLTVVWIVVTIWGGFVLMARVYKHMAAARETEDKLQNDYQTILEGRKELTLNRERAEYVHNNLYIPD 217 (546)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcchhhheechHHHHHHHhhhcCcc
Confidence 999999999998888777777777777777788888888888888999999999999999999875322 223333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 001438 271 LSNTYKYGRKAGLAKGLGLGSMHCVLFLSWSLLVWYVSVVVHKHISNGGESFTTMLNVVIAGLSLGQAAPDITAFIRAKA 350 (1077)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 350 (1077)
-++..+................+++.+....+.+|....... -+.....+..+.++.+..|+.++...++.+.+|.+
T Consensus 218 a~~~r~~~~~~n~f~~la~~~~ni~l~~lIGlvf~lal~~~w---~st~~a~tivlvlLflr~pL~s~vgilP~l~~Aqv 294 (546)
T COG4615 218 AQEYRHHIIRANTFHLLAVNWSNIMLLGLIGLVFWLALSLGW---ASTNVAATIVLVLLFLRTPLLSAVGILPTLLTAQV 294 (546)
T ss_pred hHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc---chhhHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHH
Confidence 222222222222221111122233333333444444332211 12223333334445566788888889999999999
Q ss_pred HHHHHHHHhccCcccccccccCCCCCCCcccEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHH
Q 001438 351 AAYPIFEMIERDTMSKASSKTGRKLDKLSGHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLI 430 (1077)
Q Consensus 351 s~~ri~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l 430 (1077)
|.++|.++-..++..+-+.++ ..++ =..||++||.|.|+... .-+..||++|++||++-|+|.|||||||++++|
T Consensus 295 A~~kiakle~~~~~a~~~~~q--~~p~-~~~lelrnvrfay~~~~--FhvgPiNl~ikrGelvFliG~NGsGKST~~~LL 369 (546)
T COG4615 295 AFNKIAKLELAPYKADFPRPQ--AFPD-WKTLELRNVRFAYQDNA--FHVGPINLTIKRGELVFLIGGNGSGKSTLAMLL 369 (546)
T ss_pred HHHHHHHhhcCCccccCCCCC--cCCc-ccceeeeeeeeccCccc--ceecceeeEEecCcEEEEECCCCCcHHHHHHHH
Confidence 999999876543322211111 1111 24699999999998542 457899999999999999999999999999999
Q ss_pred hcccCCCccEEEECCeeCCCCCHHHHhhheeEEccCCCcccccHHHHHhcCCCC-CCHHHHHHHHHHHhHHHHHhcCccc
Q 001438 431 ERFYEPLSGEILLDGNNIKGLDLKWLRQQIGLVNQEPALFATTIRENILYGKDD-ATMEEITRAAKLSEAMSFISNLPER 509 (1077)
Q Consensus 431 ~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~~ni~~~~~~-~~~~~~~~~~~~~~~~~~i~~l~~g 509 (1077)
.|+|.|++|+|++||++++.-+++++|+-++-|+-|-|||+.++ |.+. ++.+.+...++..++.... .+.+|
T Consensus 370 tGL~~PqsG~I~ldg~pV~~e~ledYR~LfSavFsDyhLF~~ll------~~e~~as~q~i~~~LqrLel~~kt-sl~d~ 442 (546)
T COG4615 370 TGLYQPQSGEILLDGKPVSAEQLEDYRKLFSAVFSDYHLFDQLL------GPEGKASPQLIEKWLQRLELAHKT-SLNDG 442 (546)
T ss_pred hcccCCCCCceeECCccCCCCCHHHHHHHHHHHhhhHhhhHhhh------CCccCCChHHHHHHHHHHHHhhhh-cccCC
Confidence 99999999999999999999999999999999999999998754 3322 4555555444333222211 12222
Q ss_pred hhhhhcCCCCCCChHHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHH--hCCCeEEEEccCchhHhhcCE
Q 001438 510 FETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRV--MVGRTTVVVAHRLSTIRNADV 587 (1077)
Q Consensus 510 ~~t~~~~~g~~LSgGqkqri~lARal~~~p~illlDEpts~lD~~~~~~i~~~l~~~--~~~~t~i~vtH~~~~~~~~d~ 587 (1077)
-- ....||-|||+|+|+--|++-+.||++|||=-+--||.=++.+.+.+... ..|||++.||||-.+...|||
T Consensus 443 ~f-----s~~kLStGQkKRlAll~AllEeR~Ilv~DEWAADQDPaFRR~FY~~lLp~LK~qGKTI~aIsHDd~YF~~ADr 517 (546)
T COG4615 443 RF-----SNLKLSTGQKKRLALLLALLEERDILVLDEWAADQDPAFRREFYQVLLPLLKEQGKTIFAISHDDHYFIHADR 517 (546)
T ss_pred cc-----cccccccchHHHHHHHHHHHhhCCeEEeehhhccCChHHHHHHHHHHhHHHHHhCCeEEEEecCchhhhhHHH
Confidence 11 12469999999999999999999999999999999999999997766443 359999999999999999999
Q ss_pred EEEEECCEEEEe
Q 001438 588 IAVVQGRKIVKT 599 (1077)
Q Consensus 588 i~~l~~G~i~~~ 599 (1077)
++.|++|+++|.
T Consensus 518 ll~~~~G~~~e~ 529 (546)
T COG4615 518 LLEMRNGQLSEL 529 (546)
T ss_pred HHHHhcCceeec
Confidence 999999999975
|
|
| >COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-46 Score=376.23 Aligned_cols=228 Identities=33% Similarity=0.535 Sum_probs=191.7
Q ss_pred ccEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHH---HH
Q 001438 380 GHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLK---WL 456 (1077)
Q Consensus 380 ~~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~---~~ 456 (1077)
..|++++|+++|++ ..+++|+||+|++||+++|+||||||||||+++|.|+.+|++|+|.++|+++.+++.+ .+
T Consensus 7 ~~I~vr~v~~~fG~---~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~~~~i 83 (263)
T COG1127 7 PLIEVRGVTKSFGD---RVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYEI 83 (263)
T ss_pred ceEEEeeeeeecCC---EEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHHHHHH
Confidence 46999999999974 4699999999999999999999999999999999999999999999999999998864 56
Q ss_pred hhheeEEccCCCcccc-cHHHHHhcCCCCC---CHHHHHHHHHHHhHHHHHhcCccchhhh-hcCCCCCCChHHHHHHHH
Q 001438 457 RQQIGLVNQEPALFAT-TIRENILYGKDDA---TMEEITRAAKLSEAMSFISNLPERFETQ-VGERGIQLSGGQKQRIAI 531 (1077)
Q Consensus 457 r~~i~~v~Q~~~lf~~-ti~~ni~~~~~~~---~~~~~~~~~~~~~~~~~i~~l~~g~~t~-~~~~g~~LSgGqkqri~l 531 (1077)
|+++|+++|+..||+. ||+||+.|...++ ..+.+.+ ..+..+ + .- |+... ....+..||||+++|+||
T Consensus 84 r~r~GvlFQ~gALFssltV~eNVafplre~~~lp~~~i~~-lv~~KL-~-~V----GL~~~~~~~~PsELSGGM~KRvaL 156 (263)
T COG1127 84 RKRMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRE-LVLMKL-E-LV----GLRGAAADLYPSELSGGMRKRVAL 156 (263)
T ss_pred HhheeEEeeccccccccchhHhhheehHhhccCCHHHHHH-HHHHHH-H-hc----CCChhhhhhCchhhcchHHHHHHH
Confidence 8899999999999987 9999999975322 2233222 222221 1 11 23322 223567899999999999
Q ss_pred HHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCeEEEEccCchhHhh-cCEEEEEECCEEEEecChhHHhcC
Q 001438 532 SRAIVKNPSILLLDEATSALDAESENSVQEALDRVMV--GRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELISN 608 (1077)
Q Consensus 532 ARal~~~p~illlDEpts~lD~~~~~~i~~~l~~~~~--~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 608 (1077)
|||++.||+|+++|||||+|||.+...+.+.|+++.+ +.|+|+|||+++.+.. |||++++.||+|+..|+++|+.+.
T Consensus 157 ARAialdPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl~s~~~i~Drv~~L~~gkv~~~Gt~~el~~s 236 (263)
T COG1127 157 ARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDLDSLLTIADRVAVLADGKVIAEGTPEELLAS 236 (263)
T ss_pred HHHHhcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECChHHHHhhhceEEEEeCCEEEEeCCHHHHHhC
Confidence 9999999999999999999999999999999988754 8999999999999876 999999999999999999999987
Q ss_pred CCchHHHHH
Q 001438 609 PNSAYAALV 617 (1077)
Q Consensus 609 ~~~~~~~~~ 617 (1077)
++...++.+
T Consensus 237 d~P~v~qf~ 245 (263)
T COG1127 237 DDPWVRQFF 245 (263)
T ss_pred CCHHHHHHh
Confidence 555444443
|
|
| >COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-46 Score=393.29 Aligned_cols=214 Identities=36% Similarity=0.562 Sum_probs=187.6
Q ss_pred cEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHHHhhhe
Q 001438 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQI 460 (1077)
Q Consensus 381 ~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i 460 (1077)
.++++|++|+|++ +++++|+||++++||+++|+||||||||||+++|+|+++|.+|+|.+||+++.+++.+++.+++
T Consensus 2 ~L~~~~ls~~y~~---~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~i 78 (258)
T COG1120 2 MLEVENLSFGYGG---KPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKL 78 (258)
T ss_pred eeEEEEEEEEECC---eeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhE
Confidence 4789999999974 4699999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEccCCCc-ccccHHHHHhcCCCC-------CCH---HHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHH
Q 001438 461 GLVNQEPAL-FATTIRENILYGKDD-------ATM---EEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRI 529 (1077)
Q Consensus 461 ~~v~Q~~~l-f~~ti~~ni~~~~~~-------~~~---~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri 529 (1077)
|||||++.. |.-||+|-+.+|+.. .+. +.+.++++..+..++ .......||||||||+
T Consensus 79 a~vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~l-----------a~r~~~~LSGGerQrv 147 (258)
T COG1120 79 AYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHL-----------ADRPVDELSGGERQRV 147 (258)
T ss_pred EEeccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHH-----------hcCcccccChhHHHHH
Confidence 999999754 566999999999722 122 234445555544333 3344568999999999
Q ss_pred HHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh--CCCeEEEEccCchhH-hhcCEEEEEECCEEEEecChhHHh
Q 001438 530 AISRAIVKNPSILLLDEATSALDAESENSVQEALDRVM--VGRTTVVVAHRLSTI-RNADVIAVVQGRKIVKTGSHEELI 606 (1077)
Q Consensus 530 ~lARal~~~p~illlDEpts~lD~~~~~~i~~~l~~~~--~~~t~i~vtH~~~~~-~~~d~i~~l~~G~i~~~g~~~~l~ 606 (1077)
.|||||+++|+||+||||||+||...+-++++.++++. +|+|+|+|.|+++.. +.||++++|++|+++.+|+|+|++
T Consensus 148 ~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~A~ryad~~i~lk~G~i~a~G~p~evl 227 (258)
T COG1120 148 LIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNLAARYADHLILLKDGKIVAQGTPEEVL 227 (258)
T ss_pred HHHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEeecCcchhc
Confidence 99999999999999999999999999999999999875 489999999999976 569999999999999999999988
Q ss_pred cC
Q 001438 607 SN 608 (1077)
Q Consensus 607 ~~ 608 (1077)
..
T Consensus 228 T~ 229 (258)
T COG1120 228 TE 229 (258)
T ss_pred CH
Confidence 64
|
|
| >cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-45 Score=398.38 Aligned_cols=234 Identities=49% Similarity=0.807 Sum_probs=211.3
Q ss_pred EEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHHHhhhee
Q 001438 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIG 461 (1077)
Q Consensus 382 i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 461 (1077)
|+++|++++|++. +.++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+|+.++
T Consensus 1 i~~~~l~~~~~~~-~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (237)
T cd03252 1 ITFEHVRFRYKPD-GPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRRQVG 79 (237)
T ss_pred CEEEEEEEecCCC-CccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehHhcCHHHHhhcEE
Confidence 4789999999643 246899999999999999999999999999999999999999999999999998877778888999
Q ss_pred EEccCCCcccccHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHHhccCCCE
Q 001438 462 LVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSI 541 (1077)
Q Consensus 462 ~v~Q~~~lf~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~~~p~i 541 (1077)
|+||++++|+.|++||+.++.+....+++.++++..++.+.++.+|.|+++..+.++.+||||||||++||||++.+|++
T Consensus 80 ~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~l 159 (237)
T cd03252 80 VVLQENVLFNRSIRDNIALADPGMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPRI 159 (237)
T ss_pred EEcCCchhccchHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHHHHHHHHHhhCCCE
Confidence 99999999999999999986544445556666666677788888999999988999999999999999999999999999
Q ss_pred EEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEccCchhHhhcCEEEEEECCEEEEecChhHHhcCCCchHHHHH
Q 001438 542 LLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRNADVIAVVQGRKIVKTGSHEELISNPNSAYAALV 617 (1077)
Q Consensus 542 lllDEpts~lD~~~~~~i~~~l~~~~~~~t~i~vtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~ 617 (1077)
+||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+..||++++|++|++++.|+++++.++ .+.|..++
T Consensus 160 lllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~-~~~~~~~~ 234 (237)
T cd03252 160 LIFDEATSALDYESEHAIMRNMHDICAGRTVIIIAHRLSTVKNADRIIVMEKGRIVEQGSHDELLAE-NGLYAYLY 234 (237)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHhCCEEEEEECCEEEEEcCHHHHHhc-cChHHHHH
Confidence 9999999999999999999999988778999999999999988999999999999999999999876 66676654
|
coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. |
| >TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-43 Score=433.92 Aligned_cols=391 Identities=25% Similarity=0.367 Sum_probs=338.3
Q ss_pred hHHHHHhhcccchHHHHHHHHHHHHHhhHHhHHHHHHHHHHHhhccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001438 683 SAIKLYSMVRPDWTYGVCGTICAIIAGAQMPLFALGVSQALVAYYMDWDTTQREVKKITILFCCAAVITVIVHAIEHLSF 762 (1077)
Q Consensus 683 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 762 (1077)
..++++++.+++++++..+.++.++........++..+.+++....... ........++++++.++..++.+++.+++
T Consensus 148 ~~~~l~~~~~~~~~~l~~~~~~~~~~~l~~~~~p~~~~~iid~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 225 (711)
T TIGR00958 148 LLFRLLGLSGRDWPWLISAFVFLTLSSLGEMFIPFYTGRVIDTLGGDKG--PPALASAIFFMCLLSIASSVSAGLRGGSF 225 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567888888888888888888888887777888888888876543211 11222233445556666777888899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCccccccccCCchhHHHHHhhcHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhHHH
Q 001438 763 GIMGERLTLRVREKMFSAILSNEIGWFDEMDNSSSILASRLESDATLLRTIVVDRSTILIQNFGLVTASFVIAFILNWRI 842 (1077)
Q Consensus 763 ~~~~~~~~~~Lr~~l~~~llr~p~~FFD~~~~~~G~IlnR~s~D~~~i~~~l~~~l~~~~~~~~~~~~~i~i~~~~~w~l 842 (1077)
.+.+.++..++|.++|++++++|++||++ +++|+++||+++|++.+++.+...+..++..++.+++.+++++.++|++
T Consensus 226 ~~~~~~~~~~lr~~l~~~ll~~~~~~f~~--~~~G~i~srl~~Di~~i~~~~~~~~~~~l~~~~~~i~~~~~l~~~s~~l 303 (711)
T TIGR00958 226 NYTMARINLRIREDLFRSLLRQDLGFFDE--NKTGELTSRLSSDTQTMSRSLSLNVNVLLRNLVMLLGLLGFMLWLSPRL 303 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCHHHHcC--CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 99999999999999999999999999995 9999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhHHHHHHHcchHHHHHhcchHHHHHHHHHHhhhhhHHHHHHHHH
Q 001438 843 TLVVVATYPLIISGHISEKLFFQGYGGNLSKAYLKANMLAAEAVSNIRTVAAFCSEDKVLELYSRELVEPSKRSFIRGQI 922 (1077)
Q Consensus 843 ~l~~l~~~Pl~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Etl~Gi~tIrAf~~e~~~~~~f~~~~~~~~~~~~~~~~~ 922 (1077)
++++++..|+.++...+..++.++..++.++...+.+..+.|+++|++|||+|+.|+++.++|.+..++..+...+....
T Consensus 304 ~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 383 (711)
T TIGR00958 304 TMVTLINLPLVFLAEKVFGKRYQLLSEELQEAVAKANQVAEEALSGMRTVRSFAAEEGEASRFKEALEETLQLNKRKALA 383 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999998888888888888888888888888999999999999999999999999999999999988888877777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHcCCCC
Q 001438 923 AGIFYGISQFFIFSSYGLALWYGSVLMGKELASFKSVMKSFMVLIVTALAMGETLALVPDLLKGNQMAASVFEVLDRKTQ 1002 (1077)
Q Consensus 923 ~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~l~~~~~ 1002 (1077)
.+........+......+++++|+.++..|.+++++++++..+......++..+.....+++++..+.+|++++++.+++
T Consensus 384 ~~~~~~~~~~~~~~~~~~il~~g~~lv~~g~it~G~lva~~~~~~~l~~~l~~l~~~~~~~~~~~~a~~ri~~~l~~~~~ 463 (711)
T TIGR00958 384 YAGYLWTTSVLGMLIQVLVLYYGGQLVLTGKVSSGNLVSFLLYQEQLGEAVRVLSYVYSGMMQAVGASEKVFEYLDRKPN 463 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 77777777777777788888999999999999999999999999999999999999999999999999999999998766
Q ss_pred ccCCCCcccccccccEEEeeeeeeCCCCCcccccccceeeeeCCCEEEEECCCCCCHHHHHHHHhhccCCCCCCC
Q 001438 1003 VIGDIGEELTNVEGTIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKA 1077 (1077)
Q Consensus 1003 ~~~~~~~~~~~~~G~I~f~nVsf~Y~~~~~~~VLk~vsl~I~~GekVaIVGrTGsGKSTLi~lL~Rfyd~~~G~i 1077 (1077)
.++.....+++.+|.|+|+||+|+||++++.+||+|+||+|+|||+||||||||||||||+++|+|+|+|++|+|
T Consensus 464 ~~~~~~~~~~~~~~~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I 538 (711)
T TIGR00958 464 IPLTGTLAPLNLEGLIEFQDVSFSYPNRPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQV 538 (711)
T ss_pred CCCCCCCCCCCCCCeEEEEEEEEECCCCCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEE
Confidence 543222222345789999999999997766679999999999999999999999999999999999999999986
|
|
| >COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-45 Score=400.92 Aligned_cols=218 Identities=35% Similarity=0.554 Sum_probs=190.1
Q ss_pred cEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHHHhhhe
Q 001438 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQI 460 (1077)
Q Consensus 381 ~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i 460 (1077)
.|+++|++++|++. .+++|+||+|++||+++++|||||||||||++|+|+.+|++|+|.|+|.+++++++++ +.|
T Consensus 3 ~i~l~~v~K~yg~~---~~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~~--R~i 77 (338)
T COG3839 3 ELELKNVRKSFGSF---EVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEK--RGI 77 (338)
T ss_pred EEEEeeeEEEcCCc---eeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhH--CCE
Confidence 58999999999743 1899999999999999999999999999999999999999999999999999988876 579
Q ss_pred eEEccCCCcccc-cHHHHHhcCCCCC--C----HHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHH
Q 001438 461 GLVNQEPALFAT-TIRENILYGKDDA--T----MEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISR 533 (1077)
Q Consensus 461 ~~v~Q~~~lf~~-ti~~ni~~~~~~~--~----~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lAR 533 (1077)
|+|+|+..||+. ||+|||.|+.... . ++++.++++..++ +..+..++.+||||||||+||||
T Consensus 78 amVFQ~yALyPhmtV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l-----------~~lL~r~P~~LSGGQrQRVAlaR 146 (338)
T COG3839 78 AMVFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGL-----------EHLLNRKPLQLSGGQRQRVALAR 146 (338)
T ss_pred EEEeCCccccCCCcHHHHhhhhhhhCCCchHHHHHHHHHHHHHcCC-----------hhHHhcCcccCChhhHHHHHHHH
Confidence 999999999986 9999999997432 2 3344444444433 33445567789999999999999
Q ss_pred HhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCeEEEEccCchhHhh-cCEEEEEECCEEEEecChhHHhcCCC
Q 001438 534 AIVKNPSILLLDEATSALDAESENSVQEALDRVMV--GRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELISNPN 610 (1077)
Q Consensus 534 al~~~p~illlDEpts~lD~~~~~~i~~~l~~~~~--~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~~ 610 (1077)
||+++|+++|||||+|+||++.+..+...|+++.+ +.|+|.||||...+.. +|||.||++|+|.+.|++.|+..++.
T Consensus 147 AlVr~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq~EAmtladri~Vm~~G~i~Q~g~p~ely~~P~ 226 (338)
T COG3839 147 ALVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQVEAMTLADRIVVMNDGRIQQVGTPLELYERPA 226 (338)
T ss_pred HHhcCCCEEEecCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCHHHHHhhCCEEEEEeCCeeeecCChHHHhhCcc
Confidence 99999999999999999999999999999988753 7899999999987755 99999999999999999999998876
Q ss_pred chHH
Q 001438 611 SAYA 614 (1077)
Q Consensus 611 ~~~~ 614 (1077)
..|-
T Consensus 227 n~fV 230 (338)
T COG3839 227 NLFV 230 (338)
T ss_pred chhh
Confidence 5553
|
|
| >PRK13549 xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-45 Score=435.58 Aligned_cols=211 Identities=25% Similarity=0.470 Sum_probs=174.6
Q ss_pred cEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCC--CccEEEECCeeCCCCCHHH-Hh
Q 001438 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEP--LSGEILLDGNNIKGLDLKW-LR 457 (1077)
Q Consensus 381 ~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~--~~G~i~~~g~~~~~~~~~~-~r 457 (1077)
.|+++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++| ++|+|.++|.++...+... .|
T Consensus 5 ~l~~~nl~~~~~~---~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~ 81 (506)
T PRK13549 5 LLEMKNITKTFGG---VKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIRDTER 81 (506)
T ss_pred eEEEeeeEEEeCC---eEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHH
Confidence 4899999999963 3599999999999999999999999999999999999996 8999999999998776554 46
Q ss_pred hheeEEccCCCcccc-cHHHHHhcCCCC-----CCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHH
Q 001438 458 QQIGLVNQEPALFAT-TIRENILYGKDD-----ATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAI 531 (1077)
Q Consensus 458 ~~i~~v~Q~~~lf~~-ti~~ni~~~~~~-----~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~l 531 (1077)
+.++||+|++.+|+. |++||+.++... .+.++..+. .... ++.+ |++........+||||||||++|
T Consensus 82 ~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~--~~~~---l~~~--~l~~~~~~~~~~LSgGqkqrv~l 154 (506)
T PRK13549 82 AGIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLR--AQKL---LAQL--KLDINPATPVGNLGLGQQQLVEI 154 (506)
T ss_pred CCeEEEEeccccCCCCcHHHHhhhcccccccCCcCHHHHHHH--HHHH---HHHc--CCCCCcccchhhCCHHHHHHHHH
Confidence 779999999988875 999999886421 122221111 1122 2222 23333455667899999999999
Q ss_pred HHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCeEEEEccCchhHhh-cCEEEEEECCEEEEecC
Q 001438 532 SRAIVKNPSILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGS 601 (1077)
Q Consensus 532 ARal~~~p~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~g~ 601 (1077)
|||++.+|++|||||||++||+.+...+.+.|.++. +++|+|++||+++.+.. ||+|++|++|++++.|+
T Consensus 155 a~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvi~~tH~~~~~~~~~d~v~~l~~G~i~~~~~ 226 (506)
T PRK13549 155 AKALNKQARLLILDEPTASLTESETAVLLDIIRDLKAHGIACIYISHKLNEVKAISDTICVIRDGRHIGTRP 226 (506)
T ss_pred HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHHhcCEEEEEECCEEeeecc
Confidence 999999999999999999999999999999998874 58899999999999865 99999999999987654
|
|
| >COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-45 Score=375.54 Aligned_cols=210 Identities=36% Similarity=0.539 Sum_probs=171.9
Q ss_pred EEEEeEEEEcCCCC-CcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHH---H-
Q 001438 382 IEFKDVSFCYPSRP-DVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKW---L- 456 (1077)
Q Consensus 382 i~~~~v~~~y~~~~-~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~---~- 456 (1077)
++++|+++.|.... ...+|+++||+|++||+++|+||||||||||+++|.|+..|++|+|.++|+|+..++.+. +
T Consensus 2 i~~~~v~k~y~~~~~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~R 81 (226)
T COG1136 2 IELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKLR 81 (226)
T ss_pred cEEeeeEEEeccCCcceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHHH
Confidence 57899999996432 246899999999999999999999999999999999999999999999999999888543 4
Q ss_pred hhheeEEccCCCcccc-cHHHHHhcCC--CCCCHHHHHHHHHHHhHHHHHhcCccchhhhhc-CCCCCCChHHHHHHHHH
Q 001438 457 RQQIGLVNQEPALFAT-TIRENILYGK--DDATMEEITRAAKLSEAMSFISNLPERFETQVG-ERGIQLSGGQKQRIAIS 532 (1077)
Q Consensus 457 r~~i~~v~Q~~~lf~~-ti~~ni~~~~--~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~-~~g~~LSgGqkqri~lA 532 (1077)
|++||||+|+..|++. |++|||.++. ......+..++ ...+.+.+ |+..... ..+.+||||||||+|||
T Consensus 82 ~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~~~~~~~~~~--~~~l~~~l-----gl~~~~~~~~p~eLSGGqqQRVAIA 154 (226)
T COG1136 82 RKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKRA--AEELLEVL-----GLEDRLLKKKPSELSGGQQQRVAIA 154 (226)
T ss_pred HHhEEEECccCCCCCCCCHHHHHHhHHHHcCCChhHHHHH--HHHHHHhc-----CChhhhccCCchhcCHHHHHHHHHH
Confidence 4579999999999877 9999998642 11111111111 11111111 2322222 56789999999999999
Q ss_pred HHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh--CCCeEEEEccCchhHhhcCEEEEEECCEEEE
Q 001438 533 RAIVKNPSILLLDEATSALDAESENSVQEALDRVM--VGRTTVVVAHRLSTIRNADVIAVVQGRKIVK 598 (1077)
Q Consensus 533 Ral~~~p~illlDEpts~lD~~~~~~i~~~l~~~~--~~~t~i~vtH~~~~~~~~d~i~~l~~G~i~~ 598 (1077)
|||+.+|+|++.||||++||.++.+.|++.+.+.. .|+|+|+|||+......|||++.|+||++.+
T Consensus 155 RAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA~~~dr~i~l~dG~~~~ 222 (226)
T COG1136 155 RALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAKYADRVIELKDGKIEE 222 (226)
T ss_pred HHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHhCCEEEEEeCCeeee
Confidence 99999999999999999999999999999999874 4899999999999999999999999999543
|
|
| >COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-45 Score=403.20 Aligned_cols=220 Identities=37% Similarity=0.585 Sum_probs=190.4
Q ss_pred ccEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHHHhhh
Q 001438 380 GHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQ 459 (1077)
Q Consensus 380 ~~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~ 459 (1077)
..++++||+++|+ +..+++|+||+|++||+++++|||||||||+|++|+|+..|++|+|.++|+++.+++++ ++.
T Consensus 4 ~~l~i~~v~k~yg---~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp~--kR~ 78 (352)
T COG3842 4 PALEIRNVSKSFG---DFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPE--KRP 78 (352)
T ss_pred ceEEEEeeeeecC---CeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChh--hcc
Confidence 3699999999997 35699999999999999999999999999999999999999999999999999998776 457
Q ss_pred eeEEccCCCcccc-cHHHHHhcCCC-C--CCHH----HHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHH
Q 001438 460 IGLVNQEPALFAT-TIRENILYGKD-D--ATME----EITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAI 531 (1077)
Q Consensus 460 i~~v~Q~~~lf~~-ti~~ni~~~~~-~--~~~~----~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~l 531 (1077)
||+|+|+..||+- ||+|||.||.. . ...+ .+.+++++.++.+ .-..++.+|||||+||+||
T Consensus 79 ig~VFQ~YALFPHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~-----------~~~R~p~qLSGGQqQRVAL 147 (352)
T COG3842 79 IGMVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEG-----------FADRKPHQLSGGQQQRVAL 147 (352)
T ss_pred cceeecCcccCCCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchh-----------hhhhChhhhChHHHHHHHH
Confidence 9999999999986 99999999975 1 1222 3344444443332 3345677899999999999
Q ss_pred HHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh--CCCeEEEEccCchhH-hhcCEEEEEECCEEEEecChhHHhcC
Q 001438 532 SRAIVKNPSILLLDEATSALDAESENSVQEALDRVM--VGRTTVVVAHRLSTI-RNADVIAVVQGRKIVKTGSHEELISN 608 (1077)
Q Consensus 532 ARal~~~p~illlDEpts~lD~~~~~~i~~~l~~~~--~~~t~i~vtH~~~~~-~~~d~i~~l~~G~i~~~g~~~~l~~~ 608 (1077)
||||..+|++||||||+||||.+-+..++..++++. .|.|.|+|||+.+.. .-+|||.||++|+|.+.|+|+|+...
T Consensus 148 ARAL~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqeEAl~msDrI~Vm~~G~I~Q~gtP~eiY~~ 227 (352)
T COG3842 148 ARALVPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQEEALAMSDRIAVMNDGRIEQVGTPEEIYER 227 (352)
T ss_pred HHHhhcCcchhhhcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhccceEEccCCceeecCCHHHHhhC
Confidence 999999999999999999999999999999988764 489999999999875 56999999999999999999999998
Q ss_pred CCchHHH
Q 001438 609 PNSAYAA 615 (1077)
Q Consensus 609 ~~~~~~~ 615 (1077)
|...|..
T Consensus 228 P~~~fVA 234 (352)
T COG3842 228 PATRFVA 234 (352)
T ss_pred cchHHHH
Confidence 7665543
|
|
| >cd03288 ABCC_SUR2 The SUR domain 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-44 Score=393.76 Aligned_cols=240 Identities=31% Similarity=0.503 Sum_probs=215.4
Q ss_pred CCcccEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHHH
Q 001438 377 KLSGHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWL 456 (1077)
Q Consensus 377 ~~~~~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~ 456 (1077)
...+.|+++|++++|++. +..+|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|+++.+.+...+
T Consensus 15 ~~~~~i~~~~l~~~~~~~-~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~ 93 (257)
T cd03288 15 GLGGEIKIHDLCVRYENN-LKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHTL 93 (257)
T ss_pred cCCceEEEEEEEEEeCCC-CCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCCCCCeEEECCEEhhhCCHHHH
Confidence 345789999999999743 2468999999999999999999999999999999999999999999999999988888888
Q ss_pred hhheeEEccCCCcccccHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHHhc
Q 001438 457 RQQIGLVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIV 536 (1077)
Q Consensus 457 r~~i~~v~Q~~~lf~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~ 536 (1077)
|+.++|++|+|++|++|++||+..... ...+++.++.+..++.+.++.+|.|+++.+++.+.+||||||||++||||++
T Consensus 94 ~~~i~~v~q~~~l~~~tv~~nl~~~~~-~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~G~~qrl~laral~ 172 (257)
T cd03288 94 RSRLSIILQDPILFSGSIRFNLDPECK-CTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFV 172 (257)
T ss_pred hhhEEEECCCCcccccHHHHhcCcCCC-CCHHHHHHHHHHhCcHHHHhhcccccCcEeccCCCcCCHHHHHHHHHHHHHh
Confidence 999999999999999999999975432 2344566666667777888899999999999999999999999999999999
Q ss_pred cCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEccCchhHhhcCEEEEEECCEEEEecChhHHhcCCCchHHHH
Q 001438 537 KNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRNADVIAVVQGRKIVKTGSHEELISNPNSAYAAL 616 (1077)
Q Consensus 537 ~~p~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~vtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~ 616 (1077)
++|+++||||||++||+++++.+.+.++++.+++|+|++||+++.+..||+|++|++|++++.|+++++.+...+.|..+
T Consensus 173 ~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~~~~~~~~~ 252 (257)
T cd03288 173 RKSSILIMDEATASIDMATENILQKVVMTAFADRTVVTIAHRVSTILDADLVLVLSRGILVECDTPENLLAQEDGVFASL 252 (257)
T ss_pred cCCCEEEEeCCccCCCHHHHHHHHHHHHHhcCCCEEEEEecChHHHHhCCEEEEEECCEEEEeCCHHHHHhccchHHHHH
Confidence 99999999999999999999999999988777899999999999998899999999999999999999987656667666
Q ss_pred HH
Q 001438 617 VQ 618 (1077)
Q Consensus 617 ~~ 618 (1077)
+.
T Consensus 253 ~~ 254 (257)
T cd03288 253 VR 254 (257)
T ss_pred Hh
Confidence 53
|
The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. |
| >COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-45 Score=366.29 Aligned_cols=216 Identities=36% Similarity=0.558 Sum_probs=185.5
Q ss_pred cEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCC---HHHHh
Q 001438 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLD---LKWLR 457 (1077)
Q Consensus 381 ~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~---~~~~r 457 (1077)
.|+++|++..||+ ++.+|+||||+|++||+++|+||||||||||+++|.|+.+|++|+|.++|.++..++ .+.+|
T Consensus 3 ~i~~~nl~k~yp~--~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~lr~~r 80 (258)
T COG3638 3 MIEVKNLSKTYPG--GHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKLR 80 (258)
T ss_pred eEEEeeeeeecCC--CceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHHHHHH
Confidence 5899999999984 357999999999999999999999999999999999999999999999999998877 55678
Q ss_pred hheeEEccCCCcccc-cHHHHHhcCCCCC-----------CHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHH
Q 001438 458 QQIGLVNQEPALFAT-TIRENILYGKDDA-----------TMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQ 525 (1077)
Q Consensus 458 ~~i~~v~Q~~~lf~~-ti~~ni~~~~~~~-----------~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq 525 (1077)
+++|+++|++.|.+. |+.+|++.|+-.. +.++...|.. +++.+ |+......+..+|||||
T Consensus 81 ~~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~---aLerv-----gi~~~A~qra~~LSGGQ 152 (258)
T COG3638 81 RDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALD---ALERV-----GILDKAYQRASTLSGGQ 152 (258)
T ss_pred HhceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHH---HHHHc-----CcHHHHHHHhccCCcch
Confidence 899999999999876 9999999886321 2333222222 22222 33334455777999999
Q ss_pred HHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh--CCCeEEEEccCchhHhh-cCEEEEEECCEEEEecCh
Q 001438 526 KQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVM--VGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSH 602 (1077)
Q Consensus 526 kqri~lARal~~~p~illlDEpts~lD~~~~~~i~~~l~~~~--~~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~ 602 (1077)
+||++|||||+++|+|+|-|||+++|||.+.+.+++.|++.. .|.|+|+.-|+++.+++ ||||+-|++|+|+.+|++
T Consensus 153 QQRVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdlA~~Y~~Riigl~~G~ivfDg~~ 232 (258)
T COG3638 153 QQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDLAKKYADRIIGLKAGRIVFDGPA 232 (258)
T ss_pred hHHHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHHhhheEecCCcEEEeCCh
Confidence 999999999999999999999999999999999999999874 68999999999999865 999999999999999999
Q ss_pred hHHh
Q 001438 603 EELI 606 (1077)
Q Consensus 603 ~~l~ 606 (1077)
+|+-
T Consensus 233 ~el~ 236 (258)
T COG3638 233 SELT 236 (258)
T ss_pred hhhh
Confidence 9963
|
|
| >COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-45 Score=374.44 Aligned_cols=199 Identities=35% Similarity=0.537 Sum_probs=166.6
Q ss_pred cEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHHHhhhe
Q 001438 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQI 460 (1077)
Q Consensus 381 ~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i 460 (1077)
.+++++++++|++ ..+|+|+||+|++||+++|+||||||||||+++|+|+.+|++|+|.++|.++... ...+
T Consensus 3 ~l~i~~v~~~f~~---~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p-----~~~~ 74 (248)
T COG1116 3 LLEIEGVSKSFGG---VEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGP-----GPDI 74 (248)
T ss_pred eEEEEeeEEEeCc---eEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCC-----CCCE
Confidence 4889999999975 4699999999999999999999999999999999999999999999999987443 3369
Q ss_pred eEEccCCCcccc-cHHHHHhcCCCCCC--HHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHHhcc
Q 001438 461 GLVNQEPALFAT-TIRENILYGKDDAT--MEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVK 537 (1077)
Q Consensus 461 ~~v~Q~~~lf~~-ti~~ni~~~~~~~~--~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~~ 537 (1077)
+||+|++.||+= ||+||+.++.+... .++-.+ +.....+.+ |+...-+..+.+||||||||+||||||+.
T Consensus 75 ~~vFQ~~~LlPW~Tv~~NV~l~l~~~~~~~~e~~~--~a~~~L~~V-----gL~~~~~~~P~qLSGGMrQRVaiARAL~~ 147 (248)
T COG1116 75 GYVFQEDALLPWLTVLDNVALGLELRGKSKAEARE--RAKELLELV-----GLAGFEDKYPHQLSGGMRQRVAIARALAT 147 (248)
T ss_pred EEEeccCcccchhhHHhhheehhhccccchHhHHH--HHHHHHHHc-----CCcchhhcCccccChHHHHHHHHHHHHhc
Confidence 999999999986 99999999875321 111111 111222211 34344456678999999999999999999
Q ss_pred CCCEEEEeCcCCCCCHHHHHHHHHHHHHHh--CCCeEEEEccCchhHhh-cCEEEEEECC
Q 001438 538 NPSILLLDEATSALDAESENSVQEALDRVM--VGRTTVVVAHRLSTIRN-ADVIAVVQGR 594 (1077)
Q Consensus 538 ~p~illlDEpts~lD~~~~~~i~~~l~~~~--~~~t~i~vtH~~~~~~~-~d~i~~l~~G 594 (1077)
+|+|||||||++|||+.|+..+++.+.++. .++|+++|||+++..-. +|||++|.++
T Consensus 148 ~P~lLLlDEPFgALDalTR~~lq~~l~~lw~~~~~TvllVTHdi~EAv~LsdRivvl~~~ 207 (248)
T COG1116 148 RPKLLLLDEPFGALDALTREELQDELLRLWEETRKTVLLVTHDVDEAVYLADRVVVLSNR 207 (248)
T ss_pred CCCEEEEcCCcchhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHhhhCEEEEecCC
Confidence 999999999999999999999999998864 47999999999998655 9999999994
|
|
| >TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-44 Score=406.46 Aligned_cols=225 Identities=31% Similarity=0.574 Sum_probs=187.8
Q ss_pred EEEEeEEEEcCCCC-CcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHH---Hh
Q 001438 382 IEFKDVSFCYPSRP-DVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKW---LR 457 (1077)
Q Consensus 382 i~~~~v~~~y~~~~-~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~---~r 457 (1077)
|+++|++++|++.. ..++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++..++..+ .|
T Consensus 2 I~~~~lsk~y~~~~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~l~~~r 81 (343)
T TIGR02314 2 IKLSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKAR 81 (343)
T ss_pred EEEEEEEEEECCCCcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHh
Confidence 78999999996422 246999999999999999999999999999999999999999999999999998877554 57
Q ss_pred hheeEEccCCCccc-ccHHHHHhcCCC--CCCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHH
Q 001438 458 QQIGLVNQEPALFA-TTIRENILYGKD--DATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRA 534 (1077)
Q Consensus 458 ~~i~~v~Q~~~lf~-~ti~~ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARa 534 (1077)
++|||+||++.+|+ .|++||+.++.. ..+.++..+ +..++.+.+ |+.......+.+||||||||++||||
T Consensus 82 ~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~--~v~e~l~~v-----gL~~~~~~~~~~LSgGqkQRV~IARA 154 (343)
T TIGR02314 82 RQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKR--KVTELLALV-----GLGDKHDSYPSNLSGGQKQRVAIARA 154 (343)
T ss_pred cCEEEEECCccccccCcHHHHHHHHHHHcCCCHHHHHH--HHHHHHHHc-----CCchhhhCChhhCCHHHHHHHHHHHH
Confidence 78999999999996 599999988642 122222211 112222222 23333456677999999999999999
Q ss_pred hccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCeEEEEccCchhHhh-cCEEEEEECCEEEEecChhHHhcCCCc
Q 001438 535 IVKNPSILLLDEATSALDAESENSVQEALDRVMV--GRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELISNPNS 611 (1077)
Q Consensus 535 l~~~p~illlDEpts~lD~~~~~~i~~~l~~~~~--~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~~~ 611 (1077)
|+.+|++||||||||+||+.+.+.+.+.|+++.+ +.|+|+|||+++.+.. ||+|++|++|++++.|+++++..++..
T Consensus 155 L~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~~v~~~~d~v~vl~~G~iv~~g~~~~v~~~p~~ 234 (343)
T TIGR02314 155 LASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQGTVSEIFSHPKT 234 (343)
T ss_pred HHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHcCCCc
Confidence 9999999999999999999999999999998753 8999999999999865 999999999999999999999876554
Q ss_pred hH
Q 001438 612 AY 613 (1077)
Q Consensus 612 ~~ 613 (1077)
.+
T Consensus 235 ~~ 236 (343)
T TIGR02314 235 PL 236 (343)
T ss_pred HH
Confidence 44
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. |
| >cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-44 Score=389.29 Aligned_cols=231 Identities=56% Similarity=0.883 Sum_probs=208.0
Q ss_pred EEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHHHhhhee
Q 001438 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIG 461 (1077)
Q Consensus 382 i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 461 (1077)
|+++|++++|++. +.++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+|+.++
T Consensus 1 i~~~~l~~~~~~~-~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (234)
T cd03251 1 VEFKNVTFRYPGD-GPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRRQIG 79 (234)
T ss_pred CEEEEEEEEeCCC-CccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEhhhCCHHHHHhhEE
Confidence 4789999999743 235899999999999999999999999999999999999999999999999998777778888999
Q ss_pred EEccCCCcccccHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHHhccCCCE
Q 001438 462 LVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSI 541 (1077)
Q Consensus 462 ~v~Q~~~lf~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~~~p~i 541 (1077)
|++|++.+|+.|++||+.++......++..+.++...+.++++.+|.|+++..+.++.+||||||||++||||++.+|++
T Consensus 80 ~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~l 159 (234)
T cd03251 80 LVSQDVFLFNDTVAENIAYGRPGATREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPI 159 (234)
T ss_pred EeCCCCeeccccHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHHHHHHHHHhcCCCE
Confidence 99999999999999999987654455556666666677788888998999999999999999999999999999999999
Q ss_pred EEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEccCchhHhhcCEEEEEECCEEEEecChhHHhcCCCchHH
Q 001438 542 LLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRNADVIAVVQGRKIVKTGSHEELISNPNSAYA 614 (1077)
Q Consensus 542 lllDEpts~lD~~~~~~i~~~l~~~~~~~t~i~vtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~ 614 (1077)
+||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+..||++++|++|++++.|+++++... .+.|+
T Consensus 160 llLDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~-~~~~~ 231 (234)
T cd03251 160 LILDEATSALDTESERLVQAALERLMKNRTTFVIAHRLSTIENADRIVVLEDGKIVERGTHEELLAQ-GGVYA 231 (234)
T ss_pred EEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhhCCEEEEecCCeEeeeCCHHHHHHc-Ccchh
Confidence 9999999999999999999999988778999999999999988999999999999999999998765 44443
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-42 Score=412.61 Aligned_cols=386 Identities=20% Similarity=0.314 Sum_probs=338.5
Q ss_pred HHHhhcccchHHHHHHHHHHHHHhhHHhHHHHHHHHHHHhhccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001438 686 KLYSMVRPDWTYGVCGTICAIIAGAQMPLFALGVSQALVAYYMDWDTTQREVKKITILFCCAAVITVIVHAIEHLSFGIM 765 (1077)
Q Consensus 686 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 765 (1077)
.++....++|+.+.-.++.+++......+.|+....++|....... .+......+.+++.+++..+..++|.+.+.+.
T Consensus 144 ~f~~~~~~~~~~l~~v~~~sl~l~i~~l~~p~~~q~viD~Vl~~~~--~~tL~vl~ig~~~~~l~~~~l~~lr~~~~~~~ 221 (709)
T COG2274 144 WFIPLLFKYRRLLFEVLLASLLLQLLALATPLFSQIVIDKVLPDAS--RSTLTVLAIGLLLAALFEALLRLLRTYLIAHL 221 (709)
T ss_pred hHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCc--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555554444444455455455555666666665544221 23334445667777888889999999999999
Q ss_pred HHHHHHHHHHHHHHHHHcCCccccccccCCchhHHHHHhhcHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 001438 766 GERLTLRVREKMFSAILSNEIGWFDEMDNSSSILASRLESDATLLRTIVVDRSTILIQNFGLVTASFVIAFILNWRITLV 845 (1077)
Q Consensus 766 ~~~~~~~Lr~~l~~~llr~p~~FFD~~~~~~G~IlnR~s~D~~~i~~~l~~~l~~~~~~~~~~~~~i~i~~~~~w~l~l~ 845 (1077)
+.|+...+-.+.|+|+++.|++||.. +++|++++|+. |.+.|++++.......+..+..++..+++|++++|+|+|+
T Consensus 222 ~~rld~~l~~~~~~hll~Lpl~~f~~--r~~Ge~~sR~~-el~~Ir~flt~~~l~~iiD~~~~~i~l~vm~~ys~~L~li 298 (709)
T COG2274 222 GKRLDLELSGRFFRHLLRLPLSYFEK--RSVGEIISRVR-ELEQIREFLTGSILTLIIDLLFALIFLAVMFLYSWKLTLI 298 (709)
T ss_pred HHHHhHHHHHHHHHHHHcCcHHHccC--CChhhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999995 99999999975 9999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhHHHHHHHcchHHHHHhcchHHHHHHHHHHhhhhhHHHHHHHHHHHH
Q 001438 846 VVATYPLIISGHISEKLFFQGYGGNLSKAYLKANMLAAEAVSNIRTVAAFCSEDKVLELYSRELVEPSKRSFIRGQIAGI 925 (1077)
Q Consensus 846 ~l~~~Pl~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Etl~Gi~tIrAf~~e~~~~~~f~~~~~~~~~~~~~~~~~~~~ 925 (1077)
+++.+|+.++...+...++++..++.-+..++.++...|++.|++|||+.+.|+++..++++...+..+..++.......
T Consensus 299 ~l~~~~l~~l~~~~~~~~l~~~~~~~~~~~a~~~s~lvE~i~gi~tvK~~~~e~~~~~~w~~~~~~~~~~~~~~~~~~~~ 378 (709)
T COG2274 299 VLAAIPLNVLITLIFQPLLRRKTRKLIEESAEQQSFLVETIKGIETVKALAAEPRFRSQWDNRLAKQVNIGFKTEKLALI 378 (709)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 99999999999999999999988888888899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHcCCCCccC
Q 001438 926 FYGISQFFIFSSYGLALWYGSVLMGKELASFKSVMKSFMVLIVTALAMGETLALVPDLLKGNQMAASVFEVLDRKTQVIG 1005 (1077)
Q Consensus 926 ~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~l~~~~~~~~ 1005 (1077)
...+..++......+++|+|+.++..+.+++|.++++.+.......|+..+.++..+++....+.+|+.++++.++|.+.
T Consensus 379 ~~~~~~~l~~l~~v~iL~~G~~lVl~~~lTlG~LiAf~~l~~~f~~pi~~L~~~~~~~q~~~~~~~rL~dil~~~~E~~~ 458 (709)
T COG2274 379 LNTIKSLLQQLSSVLILWFGAILVLEGELTLGQLVAFNMLAGYFISPITRLSQLWTDFQQAKVALERLGDILDTPPEQEG 458 (709)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999988665
Q ss_pred CC-CcccccccccEEEeeeeeeCCCCCcccccccceeeeeCCCEEEEECCCCCCHHHHHHHHhhccCCCCCCC
Q 001438 1006 DI-GEELTNVEGTIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKA 1077 (1077)
Q Consensus 1006 ~~-~~~~~~~~G~I~f~nVsf~Y~~~~~~~VLk~vsl~I~~GekVaIVGrTGsGKSTLi~lL~Rfyd~~~G~i 1077 (1077)
+. ....++.+|+|+|+||+|+|+++++ +||+|+||+|+|||+|||||+||||||||+.+|.|+|+|++|+|
T Consensus 459 ~~~~~~~~~~~g~I~~~nvsf~y~~~~~-~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~I 530 (709)
T COG2274 459 DKTLIHLPKLQGEIEFENVSFRYGPDDP-PVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRI 530 (709)
T ss_pred ccccccccccCceEEEEEEEEEeCCCCc-chhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceE
Confidence 43 3455678999999999999987644 68999999999999999999999999999999999999999986
|
|
| >COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-44 Score=366.75 Aligned_cols=231 Identities=31% Similarity=0.505 Sum_probs=187.2
Q ss_pred cEEEEeEEEEcCCCC-CcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCC-HHHHhh
Q 001438 381 HIEFKDVSFCYPSRP-DVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLD-LKWLRQ 458 (1077)
Q Consensus 381 ~i~~~~v~~~y~~~~-~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~-~~~~r~ 458 (1077)
.++++|+++.|+... ..++++||||+|++||++||+|+||||||||.++|+|+.+|++|+|.++|+++.... .+..++
T Consensus 3 ~l~v~nl~~~y~~~~~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~~ 82 (252)
T COG1124 3 LLSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFYR 82 (252)
T ss_pred eEEEeceEEEecCCcchhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhhcc
Confidence 488999999997542 124899999999999999999999999999999999999999999999998776543 346778
Q ss_pred heeEEccCCCc-c-c-ccHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHHh
Q 001438 459 QIGLVNQEPAL-F-A-TTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAI 535 (1077)
Q Consensus 459 ~i~~v~Q~~~l-f-~-~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal 535 (1077)
.|.+|+|||.- + + -||++-|.-+.......+.++. ..++.+.+ .+|.. ....++.+|||||+|||||||||
T Consensus 83 ~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~~~~~~~~~--i~~~L~~V-gL~~~---~l~R~P~eLSGGQ~QRiaIARAL 156 (252)
T COG1124 83 PVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQQR--IAELLDQV-GLPPS---FLDRRPHELSGGQRQRIAIARAL 156 (252)
T ss_pred ceeEEecCCccccCcchhHHHHHhhhhccCCccHHHHH--HHHHHHHc-CCCHH---HHhcCchhcChhHHHHHHHHHHh
Confidence 89999999963 3 3 3888877544322121111111 22233323 34443 34567889999999999999999
Q ss_pred ccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCeEEEEccCchhHhh-cCEEEEEECCEEEEecChhHHhcCCCch
Q 001438 536 VKNPSILLLDEATSALDAESENSVQEALDRVMV--GRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELISNPNSA 612 (1077)
Q Consensus 536 ~~~p~illlDEpts~lD~~~~~~i~~~l~~~~~--~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~~~~ 612 (1077)
.-+|++||||||||+||...+..|.+.+.++.+ +-|.|+|||+++.+.+ ||||+||++|+++|.++.+++...+...
T Consensus 157 ~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~~v~~~cdRi~Vm~~G~ivE~~~~~~l~~~~~h~ 236 (252)
T COG1124 157 IPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLALVEHMCDRIAVMDNGQIVEIGPTEELLSHPSHP 236 (252)
T ss_pred ccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHHHHHHHhhheeeeeCCeEEEeechhhhhcCCccH
Confidence 999999999999999999999999999988865 5599999999999987 9999999999999999999999876677
Q ss_pred HHHHH
Q 001438 613 YAALV 617 (1077)
Q Consensus 613 ~~~~~ 617 (1077)
|.+..
T Consensus 237 ytr~L 241 (252)
T COG1124 237 YTREL 241 (252)
T ss_pred HHHHH
Confidence 76543
|
|
| >cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-44 Score=386.12 Aligned_cols=227 Identities=47% Similarity=0.791 Sum_probs=207.4
Q ss_pred ccEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHHHhhh
Q 001438 380 GHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQ 459 (1077)
Q Consensus 380 ~~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~ 459 (1077)
+.++++|++++|++. .++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+...+|+.
T Consensus 1 ~~l~~~~l~~~~~~~--~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 78 (229)
T cd03254 1 GEIEFENVNFSYDEK--KPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLRSM 78 (229)
T ss_pred CeEEEEEEEEecCCC--CccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeHHHcCHHHHhhh
Confidence 358999999999632 358999999999999999999999999999999999999999999999999988887888889
Q ss_pred eeEEccCCCcccccHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHHhccCC
Q 001438 460 IGLVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNP 539 (1077)
Q Consensus 460 i~~v~Q~~~lf~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~~~p 539 (1077)
++|++|++.+|++|++||+.++.+....+++.++++..++.++++.+|.|+++.++....+||||||||++||||++.+|
T Consensus 79 i~~~~q~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~al~~~p 158 (229)
T cd03254 79 IGVVLQDTFLFSGTIMENIRLGRPNATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDP 158 (229)
T ss_pred EEEecCCchhhhhHHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999876555556666777777777888899999999999999999999999999999999999
Q ss_pred CEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEccCchhHhhcCEEEEEECCEEEEecChhHHhcC
Q 001438 540 SILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRNADVIAVVQGRKIVKTGSHEELISN 608 (1077)
Q Consensus 540 ~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~vtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~ 608 (1077)
+++||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+..||++++|++|++++.|+.+++..+
T Consensus 159 ~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~~~~~~~~~~~~~~ 227 (229)
T cd03254 159 KILILDEATSNIDTETEKLIQEALEKLMKGRTSIIIAHRLSTIKNADKILVLDDGKIIEEGTHDELLAK 227 (229)
T ss_pred CEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhhCCEEEEEeCCeEEEeCCHHHHHhh
Confidence 999999999999999999999999988778999999999999888999999999999999998887653
|
In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-44 Score=387.56 Aligned_cols=232 Identities=53% Similarity=0.818 Sum_probs=209.5
Q ss_pred EEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHHHhhhee
Q 001438 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIG 461 (1077)
Q Consensus 382 i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 461 (1077)
++++|++++|++. ..+++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++.+.+...+|+.++
T Consensus 1 l~~~~l~~~~~~~--~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~~~~~~~~~~~~~~i~ 78 (236)
T cd03253 1 IEFENVTFAYDPG--RPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLRRAIG 78 (236)
T ss_pred CEEEEEEEEeCCC--CceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEhhhCCHHHHHhhEE
Confidence 4789999999632 35899999999999999999999999999999999999999999999999998888888888999
Q ss_pred EEccCCCcccccHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHHhccCCCE
Q 001438 462 LVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSI 541 (1077)
Q Consensus 462 ~v~Q~~~lf~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~~~p~i 541 (1077)
|++|++.+|+.|++||+.++......+++..+++...+.+.+..+|.|+++.++.++.+||||||||++|||||+.+|++
T Consensus 79 ~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~la~aL~~~p~l 158 (236)
T cd03253 79 VVPQDTVLFNDTIGYNIRYGRPDATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPPI 158 (236)
T ss_pred EECCCChhhcchHHHHHhhcCCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCCE
Confidence 99999999999999999987655555566666777777788889999999999999999999999999999999999999
Q ss_pred EEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEccCchhHhhcCEEEEEECCEEEEecChhHHhcCCCchHHHH
Q 001438 542 LLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRNADVIAVVQGRKIVKTGSHEELISNPNSAYAAL 616 (1077)
Q Consensus 542 lllDEpts~lD~~~~~~i~~~l~~~~~~~t~i~vtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~ 616 (1077)
+||||||++||+++.+.+.+.|.++.+++|+|++||+++.+..||++++|++|++++.|+.+++..+ ...|+.+
T Consensus 159 lllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~d~~~~l~~g~i~~~~~~~~~~~~-~~~~~~~ 232 (236)
T cd03253 159 LLLDEATSALDTHTEREIQAALRDVSKGRTTIVIAHRLSTIVNADKIIVLKDGRIVERGTHEELLAK-GGLYAEM 232 (236)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHhCCEEEEEECCEEEeeCCHHHHhhc-ccHHHHH
Confidence 9999999999999999999999887668999999999999988999999999999999999998764 4555444
|
Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR01257 rim_protein retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-41 Score=437.28 Aligned_cols=220 Identities=25% Similarity=0.430 Sum_probs=186.0
Q ss_pred ccEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHHHhhh
Q 001438 380 GHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQ 459 (1077)
Q Consensus 380 ~~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~ 459 (1077)
..|+++|+++.|++. ++.+++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. +....|++
T Consensus 927 ~~L~I~nLsK~y~~~-~k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~PtsG~I~i~G~dI~~-~~~~~r~~ 1004 (2272)
T TIGR01257 927 PGVCVKNLVKIFEPS-GRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIET-NLDAVRQS 1004 (2272)
T ss_pred ceEEEEeEEEEecCC-CceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCCCCceEEEECCEECcc-hHHHHhhc
Confidence 469999999999632 3469999999999999999999999999999999999999999999999999864 45667889
Q ss_pred eeEEccCCCcccc-cHHHHHhcCCC--CCCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHHhc
Q 001438 460 IGLVNQEPALFAT-TIRENILYGKD--DATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIV 536 (1077)
Q Consensus 460 i~~v~Q~~~lf~~-ti~~ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~ 536 (1077)
+||+||++.+|+. |++|||.++.. ..+.++..+ +..+. ++.+ |++........+||||||||++||||++
T Consensus 1005 IG~~pQ~~~L~~~LTV~E~L~f~~~lkg~~~~~~~~--~v~~l---L~~v--gL~~~~~~~~~~LSGGqKQRLsLArALi 1077 (2272)
T TIGR01257 1005 LGMCPQHNILFHHLTVAEHILFYAQLKGRSWEEAQL--EMEAM---LEDT--GLHHKRNEEAQDLSGGMQRKLSVAIAFV 1077 (2272)
T ss_pred EEEEecCCcCCCCCCHHHHHHHHHHhcCCCHHHHHH--HHHHH---HHHc--CCchhhcCChhhCCHHHHHHHHHHHHHH
Confidence 9999999999976 99999987532 112222211 11112 2222 3444456677899999999999999999
Q ss_pred cCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEccCchhHhh-cCEEEEEECCEEEEecChhHHhcC
Q 001438 537 KNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELISN 608 (1077)
Q Consensus 537 ~~p~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 608 (1077)
.+|+++|||||||+||+.+++.+.+.|++..+|+|+|++||+++.+.. ||||++|++|+++..|++++|.++
T Consensus 1078 ~~PkVLLLDEPTSGLDp~sr~~l~~lL~~l~~g~TIIltTHdmdea~~laDrI~iL~~GkL~~~Gs~~~Lk~~ 1150 (2272)
T TIGR01257 1078 GDAKVVVLDEPTSGVDPYSRRSIWDLLLKYRSGRTIIMSTHHMDEADLLGDRIAIISQGRLYCSGTPLFLKNC 1150 (2272)
T ss_pred cCCCEEEEECCCcCCCHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEecCHHHHHHh
Confidence 999999999999999999999999999998789999999999999875 999999999999999999998654
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. |
| >cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-44 Score=387.78 Aligned_cols=227 Identities=68% Similarity=1.030 Sum_probs=204.8
Q ss_pred EEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHHHhhhee
Q 001438 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIG 461 (1077)
Q Consensus 382 i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 461 (1077)
++++|+++.|++..+.++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...++++++
T Consensus 1 l~i~~l~~~~~~~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 80 (238)
T cd03249 1 IEFKNVSFRYPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRSQIG 80 (238)
T ss_pred CeEEEEEEecCCCCCccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCEehhhcCHHHHHhhEE
Confidence 47899999997533346899999999999999999999999999999999999999999999999988777777788899
Q ss_pred EEccCCCcccccHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHHhccCCCE
Q 001438 462 LVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSI 541 (1077)
Q Consensus 462 ~v~Q~~~lf~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~~~p~i 541 (1077)
|++|++.+|+.|++||+.++......++..+.++..++.+++..+|.|+++..+....+||||||||++||||++.+|++
T Consensus 81 ~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la~al~~~p~l 160 (238)
T cd03249 81 LVSQEPVLFDGTIAENIRYGKPDATDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNPKI 160 (238)
T ss_pred EECCchhhhhhhHHHHhhccCCCCCHHHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHHHHHHHHHhcCCCE
Confidence 99999999989999999987654445555556666667777888999999999999999999999999999999999999
Q ss_pred EEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEccCchhHhhcCEEEEEECCEEEEecChhHHhcC
Q 001438 542 LLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRNADVIAVVQGRKIVKTGSHEELISN 608 (1077)
Q Consensus 542 lllDEpts~lD~~~~~~i~~~l~~~~~~~t~i~vtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~ 608 (1077)
+||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+..||++++|++|++++.|+.+++...
T Consensus 161 lllDEP~~gLD~~~~~~l~~~l~~~~~g~~vi~~sh~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~ 227 (238)
T cd03249 161 LLLDEATSALDAESEKLVQEALDRAMKGRTTIVIAHRLSTIRNADLIAVLQNGQVVEQGTHDELMAQ 227 (238)
T ss_pred EEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCEEEEeCCHHHHhhc
Confidence 9999999999999999999999887678999999999999888999999999999999999888764
|
In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. |
| >COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-45 Score=350.65 Aligned_cols=207 Identities=32% Similarity=0.509 Sum_probs=179.0
Q ss_pred EEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCH---HHHhh
Q 001438 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDL---KWLRQ 458 (1077)
Q Consensus 382 i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~---~~~r~ 458 (1077)
|+|+||++.|+.. .++|+|+||+|++||++-++||||||||||+++|.+...|++|+|.++|.|+..+.. .-+|+
T Consensus 2 I~f~~V~k~Y~~g--~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~LRR 79 (223)
T COG2884 2 IRFENVSKAYPGG--REALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFLRR 79 (223)
T ss_pred eeehhhhhhcCCC--chhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccchhhh
Confidence 7999999999865 569999999999999999999999999999999999999999999999999987764 46899
Q ss_pred heeEEccCCCcccc-cHHHHHhcCCCC--CC----HHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHH
Q 001438 459 QIGLVNQEPALFAT-TIRENILYGKDD--AT----MEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAI 531 (1077)
Q Consensus 459 ~i~~v~Q~~~lf~~-ti~~ni~~~~~~--~~----~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~l 531 (1077)
+||+|+||..|... |+.||++|...- .. .+++.++++++++.+-...+ +.+||||||||++|
T Consensus 80 ~IGvVFQD~rLL~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~l-----------P~~LSGGEQQRvaI 148 (223)
T COG2884 80 QIGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARAL-----------PSQLSGGEQQRVAI 148 (223)
T ss_pred eeeeEeeeccccccchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcC-----------ccccCchHHHHHHH
Confidence 99999999998765 999999987521 12 23344455555544444444 45899999999999
Q ss_pred HHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCeEEEEccCchhHhh-cCEEEEEECCEEEEecC
Q 001438 532 SRAIVKNPSILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGS 601 (1077)
Q Consensus 532 ARal~~~p~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~g~ 601 (1077)
|||++.+|++||-||||.+||+.....|++.+.++. .|.||++.||+.+.+.. --|++.+++|+++....
T Consensus 149 ARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~lv~~~~~rvl~l~~Grl~~d~~ 220 (223)
T COG2884 149 ARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLELVNRMRHRVLALEDGRLVRDES 220 (223)
T ss_pred HHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHHHHHhccCcEEEEeCCEEEeccc
Confidence 999999999999999999999999999999998874 69999999999999987 56999999999987543
|
|
| >PRK10261 glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-44 Score=434.74 Aligned_cols=224 Identities=25% Similarity=0.401 Sum_probs=177.9
Q ss_pred ccEEEEeEEEEcCCCC-CcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCC---------
Q 001438 380 GHIEFKDVSFCYPSRP-DVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIK--------- 449 (1077)
Q Consensus 380 ~~i~~~~v~~~y~~~~-~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~--------- 449 (1077)
..|+++|++++|+... +.++|+|+||++++||++||+||||||||||+++|+|+++|++|+|.++|+++.
T Consensus 11 ~~l~v~~l~~~y~~~~~~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~~G~i~~~g~~~~~~~~~~~~~ 90 (623)
T PRK10261 11 DVLAVENLNIAFMQEQQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSRQVIEL 90 (623)
T ss_pred ceEEEeceEEEecCCCCceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCeEEEECCEEecccccccccc
Confidence 3699999999996421 246999999999999999999999999999999999999999999999997552
Q ss_pred -CCCHH---HHh-hheeEEccCC--Ccccc-cHHHHHhcCCC---CCCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCC
Q 001438 450 -GLDLK---WLR-QQIGLVNQEP--ALFAT-TIRENILYGKD---DATMEEITRAAKLSEAMSFISNLPERFETQVGERG 518 (1077)
Q Consensus 450 -~~~~~---~~r-~~i~~v~Q~~--~lf~~-ti~~ni~~~~~---~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g 518 (1077)
+.+.. .+| ++||||+|+| .+++. |++||+.++.. ....++..+ +..++.+.+ .+++. +.......
T Consensus 91 ~~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~--~~~~~l~~~-gL~~~-~~~~~~~~ 166 (623)
T PRK10261 91 SEQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMV--EAKRMLDQV-RIPEA-QTILSRYP 166 (623)
T ss_pred ccCCHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHH--HHHHHHHHC-CCCCh-hhHHhCCC
Confidence 12222 233 4799999998 56764 99999987531 112222111 111222222 23321 23456677
Q ss_pred CCCChHHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh-C-CCeEEEEccCchhHhh-cCEEEEEECCE
Q 001438 519 IQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVM-V-GRTTVVVAHRLSTIRN-ADVIAVVQGRK 595 (1077)
Q Consensus 519 ~~LSgGqkqri~lARal~~~p~illlDEpts~lD~~~~~~i~~~l~~~~-~-~~t~i~vtH~~~~~~~-~d~i~~l~~G~ 595 (1077)
.+||||||||++|||||+.+|++|||||||++||+.+++.+.+.|+++. + |+|+|+|||+++.+.. ||||++|++|+
T Consensus 167 ~~LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~~g~tvi~itHdl~~~~~~adri~vl~~G~ 246 (623)
T PRK10261 167 HQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMGVVAEIADRVLVMYQGE 246 (623)
T ss_pred ccCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEeeCCe
Confidence 8999999999999999999999999999999999999999999999874 3 8999999999999865 99999999999
Q ss_pred EEEecChhHHhc
Q 001438 596 IVKTGSHEELIS 607 (1077)
Q Consensus 596 i~~~g~~~~l~~ 607 (1077)
+++.|+++++..
T Consensus 247 i~~~g~~~~~~~ 258 (623)
T PRK10261 247 AVETGSVEQIFH 258 (623)
T ss_pred ecccCCHHHhhc
Confidence 999999887753
|
|
| >COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-44 Score=373.91 Aligned_cols=210 Identities=29% Similarity=0.523 Sum_probs=179.8
Q ss_pred cEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHHHhhhe
Q 001438 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQI 460 (1077)
Q Consensus 381 ~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i 460 (1077)
.|+++|++++|.++ ++|+||||+|++|++++|+||||||||||+|+|+|+++|.+|+|.++|.+.++... +.+|
T Consensus 4 ~i~v~nl~v~y~~~---~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~---~~~I 77 (254)
T COG1121 4 MIEVENLTVSYGNR---PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRK---RLRI 77 (254)
T ss_pred EEEEeeeEEEECCE---eeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEcccccccccc---CCeE
Confidence 58999999999743 49999999999999999999999999999999999999999999999987765432 3579
Q ss_pred eEEccCC---CcccccHHHHHhcCCCCC----------CHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHH
Q 001438 461 GLVNQEP---ALFATTIRENILYGKDDA----------TMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQ 527 (1077)
Q Consensus 461 ~~v~Q~~---~lf~~ti~~ni~~~~~~~----------~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkq 527 (1077)
|||||.. |-|+-||+|-+.+|.... +.+++.++++.++..++. ......|||||+|
T Consensus 78 gYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~-----------~r~i~~LSGGQ~Q 146 (254)
T COG1121 78 GYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLR-----------DRQIGELSGGQKQ 146 (254)
T ss_pred EEcCcccccCCCCCcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCchhhh-----------CCcccccCcHHHH
Confidence 9999965 568999999999985211 235666677766655432 2344579999999
Q ss_pred HHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCeEEEEccCchhHh-hcCEEEEEECCEEEEecChhHH
Q 001438 528 RIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLSTIR-NADVIAVVQGRKIVKTGSHEEL 605 (1077)
Q Consensus 528 ri~lARal~~~p~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~vtH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l 605 (1077)
|+.|||||+++|++|+|||||+|+|+.++..+.+.|++++ +|+||++||||++.+. ++|+|+.|++ +++..|++++.
T Consensus 147 RV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtHDL~~v~~~~D~vi~Ln~-~~~~~G~~~~~ 225 (254)
T COG1121 147 RVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLGLVMAYFDRVICLNR-HLIASGPPEEV 225 (254)
T ss_pred HHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCcHHhHhhCCEEEEEcC-eeEeccChhhc
Confidence 9999999999999999999999999999999999999986 4999999999999886 4999999855 78889999998
Q ss_pred hcC
Q 001438 606 ISN 608 (1077)
Q Consensus 606 ~~~ 608 (1077)
.+.
T Consensus 226 ~~~ 228 (254)
T COG1121 226 LTE 228 (254)
T ss_pred cCH
Confidence 763
|
|
| >COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-44 Score=343.35 Aligned_cols=209 Identities=36% Similarity=0.568 Sum_probs=184.9
Q ss_pred EEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHHHhhhee
Q 001438 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIG 461 (1077)
Q Consensus 382 i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 461 (1077)
+.+++|.|+|...+ =..+++|++||++||+||||||||||+++|+|+..|.+|+|.++|+|....++.+ +-++
T Consensus 2 l~L~~V~~~y~~~~-----~~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~P~~--RPVS 74 (231)
T COG3840 2 LALDDVRFSYGHLP-----MRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPAE--RPVS 74 (231)
T ss_pred ccccceEEeeCcce-----EEEEEeecCCcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcCCccc--CChh
Confidence 56789999997543 2588999999999999999999999999999999999999999999988766543 4599
Q ss_pred EEccCCCcccc-cHHHHHhcCCCC------CCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHH
Q 001438 462 LVNQEPALFAT-TIRENILYGKDD------ATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRA 534 (1077)
Q Consensus 462 ~v~Q~~~lf~~-ti~~ni~~~~~~------~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARa 534 (1077)
.++||..||.- ||.+||.+|... ...+++..++...++.++.+++|. +||||||||+||||+
T Consensus 75 mlFQEnNLFaHLtV~qNigLGl~P~LkL~a~~r~~v~~aa~~vGl~~~~~RLP~-----------~LSGGqRQRvALARc 143 (231)
T COG3840 75 MLFQENNLFAHLTVAQNIGLGLSPGLKLNAEQREKVEAAAAQVGLAGFLKRLPG-----------ELSGGQRQRVALARC 143 (231)
T ss_pred hhhhccccchhhhhhhhhcccCCcccccCHHHHHHHHHHHHHhChhhHhhhCcc-----------ccCchHHHHHHHHHH
Confidence 99999999987 999999999732 234567777888888777777774 799999999999999
Q ss_pred hccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh--CCCeEEEEccCchhHhh-cCEEEEEECCEEEEecChhHHhcC
Q 001438 535 IVKNPSILLLDEATSALDAESENSVQEALDRVM--VGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELISN 608 (1077)
Q Consensus 535 l~~~p~illlDEpts~lD~~~~~~i~~~l~~~~--~~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 608 (1077)
++++-+|++||||+|+|||.-+.++...+.++. ++.|+++|||+++.+.. +|+++++++|+|.++|+.+++...
T Consensus 144 lvR~~PilLLDEPFsALdP~LR~eMl~Lv~~l~~E~~~TllmVTH~~~Da~~ia~~~~fl~~Gri~~~g~~~~~~~~ 220 (231)
T COG3840 144 LVREQPILLLDEPFSALDPALRAEMLALVSQLCDERKMTLLMVTHHPEDAARIADRVVFLDNGRIAAQGSTQELLSG 220 (231)
T ss_pred HhccCCeEEecCchhhcCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhhhceEEEeCCEEEeeccHHHHhcc
Confidence 999999999999999999999999999988874 57899999999999865 999999999999999999999875
|
|
| >cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-43 Score=379.51 Aligned_cols=220 Identities=35% Similarity=0.551 Sum_probs=202.3
Q ss_pred ccEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHHHhhh
Q 001438 380 GHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQ 459 (1077)
Q Consensus 380 ~~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~ 459 (1077)
+.++++|++++|+.. +.++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+...+|+.
T Consensus 1 ~~l~~~~l~~~~~~~-~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 79 (221)
T cd03244 1 GDIEFKNVSLRYRPN-LPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDLRSR 79 (221)
T ss_pred CcEEEEEEEEecCCC-CcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhHhCCHHHHhhh
Confidence 358999999999743 2469999999999999999999999999999999999999999999999999988888888999
Q ss_pred eeEEccCCCcccccHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHHhccCC
Q 001438 460 IGLVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNP 539 (1077)
Q Consensus 460 i~~v~Q~~~lf~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~~~p 539 (1077)
++|++|++.+++.|++||+.+... ...+++.++++..++.+++..+|.|+++..++.+.+||||||||++||||++.+|
T Consensus 80 i~~~~q~~~l~~~tv~enl~~~~~-~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p 158 (221)
T cd03244 80 ISIIPQDPVLFSGTIRSNLDPFGE-YSDEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKS 158 (221)
T ss_pred EEEECCCCccccchHHHHhCcCCC-CCHHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHHHHHhcCC
Confidence 999999999999999999986543 4566777777777888889999999999999999999999999999999999999
Q ss_pred CEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEccCchhHhhcCEEEEEECCEEEEecC
Q 001438 540 SILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRNADVIAVVQGRKIVKTGS 601 (1077)
Q Consensus 540 ~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~vtH~~~~~~~~d~i~~l~~G~i~~~g~ 601 (1077)
+++||||||++||+.+++.+.+.|+++.+++|+|++||+++.+..||++++|++|++++.|+
T Consensus 159 ~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~~~~~~~ 220 (221)
T cd03244 159 KILVLDEATASVDPETDALIQKTIREAFKDCTVLTIAHRLDTIIDSDRILVLDKGRVVEFDS 220 (221)
T ss_pred CEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCeEEecCC
Confidence 99999999999999999999999998877899999999999998899999999999998875
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >PRK09700 D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-43 Score=424.66 Aligned_cols=213 Identities=24% Similarity=0.398 Sum_probs=175.1
Q ss_pred cEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHHH-hhh
Q 001438 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWL-RQQ 459 (1077)
Q Consensus 381 ~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~-r~~ 459 (1077)
.++++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+.... +++
T Consensus 5 ~l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~ 81 (510)
T PRK09700 5 YISMAGIGKSFGP---VHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAAQLG 81 (510)
T ss_pred eEEEeeeEEEcCC---eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCCccEEEECCEECCCCCHHHHHHCC
Confidence 4899999999963 358999999999999999999999999999999999999999999999999987776543 457
Q ss_pred eeEEccCCCcccc-cHHHHHhcCCCC----C-----CHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHH
Q 001438 460 IGLVNQEPALFAT-TIRENILYGKDD----A-----TMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRI 529 (1077)
Q Consensus 460 i~~v~Q~~~lf~~-ti~~ni~~~~~~----~-----~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri 529 (1077)
++|++|++.+++. |++||+.++... . ..++..+ +.....+. + |+.........+||||||||+
T Consensus 82 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~---~--gl~~~~~~~~~~LSgG~~qrv 154 (510)
T PRK09700 82 IGIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRV--RAAMMLLR---V--GLKVDLDEKVANLSISHKQML 154 (510)
T ss_pred eEEEeecccccCCCcHHHHhhhccccccccccccccCHHHHHH--HHHHHHHH---c--CCCCCcccchhhCCHHHHHHH
Confidence 9999999988876 999999876421 0 1111111 11222222 2 222234455678999999999
Q ss_pred HHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCeEEEEccCchhHhh-cCEEEEEECCEEEEecChh
Q 001438 530 AISRAIVKNPSILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHE 603 (1077)
Q Consensus 530 ~lARal~~~p~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~ 603 (1077)
+|||||+.+|++|||||||++||+.+.+.+.+.|+++. +|+|+|+|||+++.+.. ||+|++|++|++++.|+++
T Consensus 155 ~ia~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~ 230 (510)
T PRK09700 155 EIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKLAEIRRICDRYTVMKDGSSVCSGMVS 230 (510)
T ss_pred HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEeeecchh
Confidence 99999999999999999999999999999999998874 48999999999999875 9999999999998776543
|
|
| >COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-44 Score=376.33 Aligned_cols=215 Identities=38% Similarity=0.631 Sum_probs=188.8
Q ss_pred cEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCC-CCCHHHHhhh
Q 001438 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIK-GLDLKWLRQQ 459 (1077)
Q Consensus 381 ~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~-~~~~~~~r~~ 459 (1077)
.++++|++|+|+++ .++|+++||+|++||.++|+|+||||||||+++|.|+++|++|+|.++|.++. +.+...+|++
T Consensus 3 ~i~~~~l~~~y~~~--~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~~~~~ 80 (235)
T COG1122 3 MIEAENLSFRYPGR--KAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELRQK 80 (235)
T ss_pred eEEEEEEEEEcCCC--ceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHHhhcc
Confidence 47899999999865 57999999999999999999999999999999999999999999999999998 4788999999
Q ss_pred eeEEccCC--CcccccHHHHHhcCCCCC--CHHHH----HHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHH
Q 001438 460 IGLVNQEP--ALFATTIRENILYGKDDA--TMEEI----TRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAI 531 (1077)
Q Consensus 460 i~~v~Q~~--~lf~~ti~~ni~~~~~~~--~~~~~----~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~l 531 (1077)
+|||+|+| .+|..||.|.+.||..+. ..+++ .++++.++ +.........+||||||||+||
T Consensus 81 vG~VfQnpd~q~~~~tV~~evafg~~n~g~~~~e~~~rv~~~l~~vg-----------l~~~~~r~p~~LSGGqkqRvaI 149 (235)
T COG1122 81 VGLVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEERVAEALELVG-----------LEELLDRPPFNLSGGQKQRVAI 149 (235)
T ss_pred eEEEEECcccccccCcHHHHHhhchhhcCCCHHHHHHHHHHHHHHcC-----------chhhccCCccccCCcceeeHHh
Confidence 99999999 688999999999997432 33332 23333333 2223455677999999999999
Q ss_pred HHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCeEEEEccCchhHhh-cCEEEEEECCEEEEecChhHHhcC
Q 001438 532 SRAIVKNPSILLLDEATSALDAESENSVQEALDRVMV--GRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELISN 608 (1077)
Q Consensus 532 ARal~~~p~illlDEpts~lD~~~~~~i~~~l~~~~~--~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 608 (1077)
|.+|+.+|++||||||||+||+...+.+.+.++++.+ ++|+|++||+++.+.. |||+++|++|+++.+|+++++.++
T Consensus 150 A~vLa~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~~~~~~ad~v~vl~~G~i~~~g~p~~i~~~ 229 (235)
T COG1122 150 AGVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLELVLEYADRVVVLDDGKILADGDPAEIFND 229 (235)
T ss_pred hHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHHHHHhhCCEEEEEECCEEeecCCHHHHhhh
Confidence 9999999999999999999999999999999999863 5899999999999876 999999999999999999998865
|
|
| >PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-43 Score=422.48 Aligned_cols=209 Identities=25% Similarity=0.400 Sum_probs=171.4
Q ss_pred EEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCH-HHHhhheeE
Q 001438 384 FKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDL-KWLRQQIGL 462 (1077)
Q Consensus 384 ~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~-~~~r~~i~~ 462 (1077)
++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+. ..+|++++|
T Consensus 1 ~~nl~~~~~~---~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~ 77 (491)
T PRK10982 1 MSNISKSFPG---VKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALENGISM 77 (491)
T ss_pred CCceEEEeCC---EEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCEECCCCCHHHHHhCCEEE
Confidence 3689999963 358999999999999999999999999999999999999999999999999876554 345678999
Q ss_pred EccCCCcccc-cHHHHHhcCCCC-----CCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHHhc
Q 001438 463 VNQEPALFAT-TIRENILYGKDD-----ATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIV 536 (1077)
Q Consensus 463 v~Q~~~lf~~-ti~~ni~~~~~~-----~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~ 536 (1077)
++|++.++.. |++||+.++... ...++..+ +.. +.++.+ |++........+||||||||++||||++
T Consensus 78 v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~--~~~---~~l~~~--~l~~~~~~~~~~LSgGq~qrv~lA~al~ 150 (491)
T PRK10982 78 VHQELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYR--DTK---AIFDEL--DIDIDPRAKVATLSVSQMQMIEIAKAFS 150 (491)
T ss_pred EecccccccCCCHHHHhhcccccccccccCHHHHHH--HHH---HHHHHc--CCCCCccCchhhCCHHHHHHHHHHHHHH
Confidence 9999988765 999999876421 11121111 111 222222 3333445567789999999999999999
Q ss_pred cCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCeEEEEccCchhHhh-cCEEEEEECCEEEEecCh
Q 001438 537 KNPSILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSH 602 (1077)
Q Consensus 537 ~~p~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~ 602 (1077)
.+|++|||||||++||+.+.+.+.+.|+++. +|+|+|++||+++.+.. ||+|++|++|++++.|++
T Consensus 151 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~ 218 (491)
T PRK10982 151 YNAKIVIMDEPTSSLTEKEVNHLFTIIRKLKERGCGIVYISHKMEEIFQLCDEITILRDGQWIATQPL 218 (491)
T ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEeecCh
Confidence 9999999999999999999999999998864 58999999999998865 999999999999876543
|
|
| >TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-43 Score=421.72 Aligned_cols=210 Identities=25% Similarity=0.436 Sum_probs=170.2
Q ss_pred EEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCC--CccEEEECCeeCCCCCHHH-Hhh
Q 001438 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEP--LSGEILLDGNNIKGLDLKW-LRQ 458 (1077)
Q Consensus 382 i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~--~~G~i~~~g~~~~~~~~~~-~r~ 458 (1077)
++++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++| ++|+|.++|+++...+... .|+
T Consensus 2 l~i~~l~~~~~~---~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 78 (500)
T TIGR02633 2 LEMKGIVKTFGG---VKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTERA 78 (500)
T ss_pred EEEEeEEEEeCC---eEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHhC
Confidence 689999999963 3589999999999999999999999999999999999987 7999999999998776544 456
Q ss_pred heeEEccCCCcccc-cHHHHHhcCCCC------CCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHH
Q 001438 459 QIGLVNQEPALFAT-TIRENILYGKDD------ATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAI 531 (1077)
Q Consensus 459 ~i~~v~Q~~~lf~~-ti~~ni~~~~~~------~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~l 531 (1077)
+++||||++.+++. |++||+.++... ...++..+ +...+.+.+ .+++.. ......+||||||||++|
T Consensus 79 ~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~-~l~~~~---~~~~~~~LSgG~~qrv~i 152 (500)
T TIGR02633 79 GIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYL--RAKNLLREL-QLDADN---VTRPVGDYGGGQQQLVEI 152 (500)
T ss_pred CEEEEeeccccCCCCcHHHHHHhhccccccccccCHHHHHH--HHHHHHHHc-CCCCCc---ccCchhhCCHHHHHHHHH
Confidence 79999999988876 999999886421 11222111 111222221 122211 123356899999999999
Q ss_pred HHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCeEEEEccCchhHhh-cCEEEEEECCEEEEec
Q 001438 532 SRAIVKNPSILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTG 600 (1077)
Q Consensus 532 ARal~~~p~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~g 600 (1077)
||||+.+|++|||||||++||+.+.+.+.+.|+++. +|+|+|+|||+++.+.. ||+|++|++|++++.|
T Consensus 153 A~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiitHd~~~~~~~~d~i~~l~~G~i~~~~ 223 (500)
T TIGR02633 153 AKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKAHGVACVYISHKLNEVKAVCDTICVIRDGQHVATK 223 (500)
T ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHHHhCCEEEEEeCCeEeeec
Confidence 999999999999999999999999999999998864 57899999999999875 9999999999988543
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). |
| >COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-44 Score=371.55 Aligned_cols=223 Identities=34% Similarity=0.538 Sum_probs=181.8
Q ss_pred cEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCe---eCCCCCHHHHh
Q 001438 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGN---NIKGLDLKWLR 457 (1077)
Q Consensus 381 ~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~---~~~~~~~~~~r 457 (1077)
.|+++|+++.|+. ..+++|||++|+.||.+|+.||||||||||+++|+|+..|++|.|.++|. |.++.. .-.
T Consensus 2 ~i~i~~~~~~~~~---~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~~~--~~~ 76 (345)
T COG1118 2 SIRINNVKKRFGA---FGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLA--VRD 76 (345)
T ss_pred ceeehhhhhhccc---ccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhccc--hhh
Confidence 4788999999974 35899999999999999999999999999999999999999999999999 555533 233
Q ss_pred hheeEEccCCCcccc-cHHHHHhcCCCCC--CHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHH
Q 001438 458 QQIGLVNQEPALFAT-TIRENILYGKDDA--TMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRA 534 (1077)
Q Consensus 458 ~~i~~v~Q~~~lf~~-ti~~ni~~~~~~~--~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARa 534 (1077)
++||+|+|+..||.- ||.|||.||.+-. ...+.....+..++++.++ | +-.-...+.+||||||||+|||||
T Consensus 77 R~VGfvFQ~YALF~HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvq-L----~~la~ryP~QLSGGQrQRVALARA 151 (345)
T COG1118 77 RKVGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQ-L----EGLADRYPAQLSGGQRQRVALARA 151 (345)
T ss_pred cceeEEEechhhcccchHHhhhhhcccccccCCChhhHHHHHHHHHHHhc-c----cchhhcCchhcChHHHHHHHHHHH
Confidence 579999999999965 9999999997211 1111111222222222221 1 112234678999999999999999
Q ss_pred hccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh--CCCeEEEEccCchhHh-hcCEEEEEECCEEEEecChhHHhcCCCc
Q 001438 535 IVKNPSILLLDEATSALDAESENSVQEALDRVM--VGRTTVVVAHRLSTIR-NADVIAVVQGRKIVKTGSHEELISNPNS 611 (1077)
Q Consensus 535 l~~~p~illlDEpts~lD~~~~~~i~~~l~~~~--~~~t~i~vtH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~~~~~ 611 (1077)
|..+|++||||||++|||++.++.+..-|+++. -|.|+++|||+.+.+. .||||++|++|+|.+.|+++|+...|+.
T Consensus 152 LA~eP~vLLLDEPf~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~eea~~ladrvvvl~~G~Ieqvg~p~ev~~~P~s 231 (345)
T COG1118 152 LAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQEEALELADRVVVLNQGRIEQVGPPDEVYDHPAS 231 (345)
T ss_pred hhcCCCeEeecCCchhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCHHHHHhhcceEEEecCCeeeeeCCHHHHhcCCCc
Confidence 999999999999999999999999999888864 3899999999999875 5999999999999999999999988765
Q ss_pred hH
Q 001438 612 AY 613 (1077)
Q Consensus 612 ~~ 613 (1077)
.|
T Consensus 232 ~f 233 (345)
T COG1118 232 RF 233 (345)
T ss_pred cc
Confidence 54
|
|
| >cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-43 Score=375.95 Aligned_cols=219 Identities=43% Similarity=0.726 Sum_probs=197.3
Q ss_pred cEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHHHhhhe
Q 001438 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQI 460 (1077)
Q Consensus 381 ~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i 460 (1077)
.++++|++++|++. +.++++|+||+|++||+++|+||||||||||+++|+|+.+|++|+|.++|.++...+...+|+.+
T Consensus 2 ~l~~~~l~~~~~~~-~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 80 (220)
T cd03245 2 RIEFRNVSFSYPNQ-EIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLRRNI 80 (220)
T ss_pred eEEEEEEEEEcCCC-CcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhHHCCHHHHHhhE
Confidence 58999999999642 24589999999999999999999999999999999999999999999999998877777778899
Q ss_pred eEEccCCCcccccHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHHhccCCC
Q 001438 461 GLVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPS 540 (1077)
Q Consensus 461 ~~v~Q~~~lf~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~~~p~ 540 (1077)
+|++|++.+|+.|++||+.++......+++.+.++..++.+.++..|.|++|.+.+...+||||||||++||||++.+|+
T Consensus 81 ~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al~~~p~ 160 (220)
T cd03245 81 GYVPQDVTLFYGTLRDNITLGAPLADDERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPP 160 (220)
T ss_pred EEeCCCCccccchHHHHhhcCCCCCCHHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHHHhcCCC
Confidence 99999999998899999988754444556666677777777788899999999988899999999999999999999999
Q ss_pred EEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEccCchhHhhcCEEEEEECCEEEEec
Q 001438 541 ILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRNADVIAVVQGRKIVKTG 600 (1077)
Q Consensus 541 illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~vtH~~~~~~~~d~i~~l~~G~i~~~g 600 (1077)
++||||||++||+.+...+.+.|+++.+++|+|++||+++.++.||++++|++|++++.|
T Consensus 161 llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~d~v~~l~~g~i~~~~ 220 (220)
T cd03245 161 ILLLDEPTSAMDMNSEERLKERLRQLLGDKTLIIITHRPSLLDLVDRIIVMDSGRIVADG 220 (220)
T ss_pred EEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHhCCEEEEEeCCeEeecC
Confidence 999999999999999999999999886668999999999988779999999999998754
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. |
| >PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-43 Score=393.51 Aligned_cols=222 Identities=26% Similarity=0.448 Sum_probs=186.5
Q ss_pred ccEEEEeEEEEcCCCC--CcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCC------
Q 001438 380 GHIEFKDVSFCYPSRP--DVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGL------ 451 (1077)
Q Consensus 380 ~~i~~~~v~~~y~~~~--~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~------ 451 (1077)
..|+++|++|+|++.. ..++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|+++|+++.+.
T Consensus 20 ~~l~~~nl~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~~~~~~~~~ 99 (320)
T PRK13631 20 IILRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNHEL 99 (320)
T ss_pred ceEEEEeEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEcccccccccc
Confidence 4699999999997421 23599999999999999999999999999999999999999999999999998653
Q ss_pred ----------CHHHHhhheeEEccCC--CcccccHHHHHhcCCC--CCCHHHHHHHHHHHhHHHHHhcCccchh-hhhcC
Q 001438 452 ----------DLKWLRQQIGLVNQEP--ALFATTIRENILYGKD--DATMEEITRAAKLSEAMSFISNLPERFE-TQVGE 516 (1077)
Q Consensus 452 ----------~~~~~r~~i~~v~Q~~--~lf~~ti~~ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~-t~~~~ 516 (1077)
....+|++|+||+|+| .+|+.|++|||.++.. ..+.++..+. . .+.++.+ |++ ...++
T Consensus 100 ~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~--~---~~~l~~~--gL~~~~~~~ 172 (320)
T PRK13631 100 ITNPYSKKIKNFKELRRRVSMVFQFPEYQLFKDTIEKDIMFGPVALGVKKSEAKKL--A---KFYLNKM--GLDDSYLER 172 (320)
T ss_pred cccccccccchHHHHHhcEEEEEECchhccccchHHHHHHhhHHhcCCCHHHHHHH--H---HHHHHHc--CCChhHhcC
Confidence 3456788999999998 6899999999998742 1222222111 1 1223333 343 35677
Q ss_pred CCCCCChHHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCeEEEEccCchhHh-hcCEEEEEECC
Q 001438 517 RGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLSTIR-NADVIAVVQGR 594 (1077)
Q Consensus 517 ~g~~LSgGqkqri~lARal~~~p~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~vtH~~~~~~-~~d~i~~l~~G 594 (1077)
.+.+||||||||++|||||+.+|++|||||||++||+.+++.+.+.|.++. +++|+|+|||+++.+. .||+|++|++|
T Consensus 173 ~~~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~g~TiiivtHd~~~~~~~adri~vl~~G 252 (320)
T PRK13631 173 SPFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTMEHVLEVADEVIVMDKG 252 (320)
T ss_pred CcccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECC
Confidence 889999999999999999999999999999999999999999999998764 5899999999999874 59999999999
Q ss_pred EEEEecChhHHhcC
Q 001438 595 KIVKTGSHEELISN 608 (1077)
Q Consensus 595 ~i~~~g~~~~l~~~ 608 (1077)
++++.|+++++...
T Consensus 253 ~i~~~g~~~~~~~~ 266 (320)
T PRK13631 253 KILKTGTPYEIFTD 266 (320)
T ss_pred EEEEeCCHHHHhcC
Confidence 99999999998764
|
|
| >PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-43 Score=420.81 Aligned_cols=222 Identities=26% Similarity=0.422 Sum_probs=174.7
Q ss_pred cEEEEeEEEEcCCC-CCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCC-----CccEEEECCeeCCCCCHH
Q 001438 381 HIEFKDVSFCYPSR-PDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEP-----LSGEILLDGNNIKGLDLK 454 (1077)
Q Consensus 381 ~i~~~~v~~~y~~~-~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~-----~~G~i~~~g~~~~~~~~~ 454 (1077)
.++++|++++|++. ...++|+|+||++++||+++|+||||||||||+++|+|+++| ++|+|.++|+++...+..
T Consensus 5 ~l~~~~l~~~~~~~~~~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~ 84 (529)
T PRK15134 5 LLAIENLSVAFRQQQTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHASEQ 84 (529)
T ss_pred eEEEeceEEEecCCCCceeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCCHH
Confidence 48999999999632 124699999999999999999999999999999999999987 799999999999877644
Q ss_pred H---Hh-hheeEEccCCC--ccc-ccHHHHHhcCC---CCCCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChH
Q 001438 455 W---LR-QQIGLVNQEPA--LFA-TTIRENILYGK---DDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGG 524 (1077)
Q Consensus 455 ~---~r-~~i~~v~Q~~~--lf~-~ti~~ni~~~~---~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgG 524 (1077)
. +| +++||++|+|. +++ .|+++|+.++. ...+.++..+ +...+.+.+ .+++ ..........+||||
T Consensus 85 ~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~-gl~~-~~~~~~~~~~~LSgG 160 (529)
T PRK15134 85 TLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREAARG--EILNCLDRV-GIRQ-AAKRLTDYPHQLSGG 160 (529)
T ss_pred HHHHHhcCceEEEecCchhhcCchhhHHHHHHHHHHHhcCCCHHHHHH--HHHHHHHHC-CCCC-hHHHHhhCCcccCHH
Confidence 3 33 57999999985 444 49999986431 1112222111 111222222 2221 111235567799999
Q ss_pred HHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh--CCCeEEEEccCchhHhh-cCEEEEEECCEEEEecC
Q 001438 525 QKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVM--VGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGS 601 (1077)
Q Consensus 525 qkqri~lARal~~~p~illlDEpts~lD~~~~~~i~~~l~~~~--~~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~g~ 601 (1077)
||||++|||||+.+|++|||||||++||+.+.+.+.+.|+++. .++|+|+|||+++.+.. ||||++|++|++++.|+
T Consensus 161 e~qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~dri~~l~~G~i~~~g~ 240 (529)
T PRK15134 161 ERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLSIVRKLADRVAVMQNGRCVEQNR 240 (529)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHhcCEEEEEECCEEEEeCC
Confidence 9999999999999999999999999999999999999998874 37999999999999865 99999999999999887
Q ss_pred hhHHh
Q 001438 602 HEELI 606 (1077)
Q Consensus 602 ~~~l~ 606 (1077)
++++.
T Consensus 241 ~~~~~ 245 (529)
T PRK15134 241 AATLF 245 (529)
T ss_pred HHHHh
Confidence 76553
|
|
| >PRK10762 D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-43 Score=417.89 Aligned_cols=211 Identities=25% Similarity=0.419 Sum_probs=173.1
Q ss_pred cEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHH-Hhhh
Q 001438 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKW-LRQQ 459 (1077)
Q Consensus 381 ~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~-~r~~ 459 (1077)
.|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+... .+++
T Consensus 4 ~i~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~ 80 (501)
T PRK10762 4 LLQLKGIDKAFPG---VKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQEAG 80 (501)
T ss_pred eEEEeeeEEEeCC---eEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCC
Confidence 4899999999963 35899999999999999999999999999999999999999999999999987655444 3567
Q ss_pred eeEEccCCCcccc-cHHHHHhcCCCC------CCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHH
Q 001438 460 IGLVNQEPALFAT-TIRENILYGKDD------ATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAIS 532 (1077)
Q Consensus 460 i~~v~Q~~~lf~~-ti~~ni~~~~~~------~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lA 532 (1077)
++|++|++.+++. |++||+.++... .+.++..+ +.... ++.+ |+.........+||||||||++||
T Consensus 81 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~--~~~~~---l~~~--~l~~~~~~~~~~LSgG~~qrv~la 153 (501)
T PRK10762 81 IGIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYA--EADKL---LARL--NLRFSSDKLVGELSIGEQQMVEIA 153 (501)
T ss_pred EEEEEcchhccCCCcHHHHhhhccccccccCccCHHHHHH--HHHHH---HHHc--CCCCCccCchhhCCHHHHHHHHHH
Confidence 9999999988875 999999886421 11121111 11122 2222 222233455678999999999999
Q ss_pred HHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCeEEEEccCchhHhh-cCEEEEEECCEEEEecC
Q 001438 533 RAIVKNPSILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGS 601 (1077)
Q Consensus 533 Ral~~~p~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~g~ 601 (1077)
|||+.+|++|||||||++||+.+.+.+.+.|+++. +++|+|++||+++.+.. ||+|++|++|++++.|+
T Consensus 154 ~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvii~sHd~~~~~~~~d~i~~l~~G~i~~~~~ 224 (501)
T PRK10762 154 KVLSFESKVIIMDEPTDALTDTETESLFRVIRELKSQGRGIVYISHRLKEIFEICDDVTVFRDGQFIAERE 224 (501)
T ss_pred HHHhcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEecC
Confidence 99999999999999999999999999999998874 57899999999999865 99999999999987653
|
|
| >TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-43 Score=422.01 Aligned_cols=210 Identities=26% Similarity=0.489 Sum_probs=166.1
Q ss_pred EEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhccc--CCCccEEEEC---------------
Q 001438 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFY--EPLSGEILLD--------------- 444 (1077)
Q Consensus 382 i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~--~~~~G~i~~~--------------- 444 (1077)
|+++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+. +|++|+|.++
T Consensus 1 l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~~~~~~~~~~~~~~~~ 77 (520)
T TIGR03269 1 IEVKNLTKKFDG---KEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYVERPSK 77 (520)
T ss_pred CEEEEEEEEECC---eEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEeccccccccccccccc
Confidence 578999999963 35899999999999999999999999999999999996 7999999997
Q ss_pred --------CeeCC-------CCC---HHHHhhheeEEccC-CCcccc-cHHHHHhcCCC--CCCHHHHHHHHHHHhHHHH
Q 001438 445 --------GNNIK-------GLD---LKWLRQQIGLVNQE-PALFAT-TIRENILYGKD--DATMEEITRAAKLSEAMSF 502 (1077)
Q Consensus 445 --------g~~~~-------~~~---~~~~r~~i~~v~Q~-~~lf~~-ti~~ni~~~~~--~~~~~~~~~~~~~~~~~~~ 502 (1077)
|.++. ..+ ...+|+.++|++|+ +.+|+. |++||+.++.. ....++..+ +..++
T Consensus 78 ~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~--~~~~~--- 152 (520)
T TIGR03269 78 VGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEIGYEGKEAVG--RAVDL--- 152 (520)
T ss_pred cccccccccccccccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHcCCCHHHHHH--HHHHH---
Confidence 33321 111 12456789999998 577765 99999987532 112222111 11122
Q ss_pred HhcCccchhhhhcCCCCCCChHHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh--CCCeEEEEccCch
Q 001438 503 ISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVM--VGRTTVVVAHRLS 580 (1077)
Q Consensus 503 i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~~~p~illlDEpts~lD~~~~~~i~~~l~~~~--~~~t~i~vtH~~~ 580 (1077)
++.+ |++........+||||||||++|||||+.+|++|||||||++||+.+.+.+.+.|+++. .|+|+|+|||+++
T Consensus 153 l~~~--gl~~~~~~~~~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivtHd~~ 230 (520)
T TIGR03269 153 IEMV--QLSHRITHIARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPE 230 (520)
T ss_pred HHHc--CChhhhhcCcccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHH
Confidence 2222 33334456678999999999999999999999999999999999999999999998874 3799999999999
Q ss_pred hHhh-cCEEEEEECCEEEEecC
Q 001438 581 TIRN-ADVIAVVQGRKIVKTGS 601 (1077)
Q Consensus 581 ~~~~-~d~i~~l~~G~i~~~g~ 601 (1077)
.+.. ||+|++|++|++++.|+
T Consensus 231 ~~~~~~d~i~~l~~G~i~~~g~ 252 (520)
T TIGR03269 231 VIEDLSDKAIWLENGEIKEEGT 252 (520)
T ss_pred HHHHhcCEEEEEeCCEEeeecC
Confidence 9865 99999999999876543
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. |
| >TIGR02868 CydC thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-40 Score=401.42 Aligned_cols=383 Identities=17% Similarity=0.119 Sum_probs=312.3
Q ss_pred HHhhcccchHHHHHHHHHHHHHhhHHhHHHHHHHHHHHhhccCchhhHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHH
Q 001438 687 LYSMVRPDWTYGVCGTICAIIAGAQMPLFALGVSQALVAYYMDWDTTQREVKKI--TILFCCAAVITVIVHAIEHLSFGI 764 (1077)
Q Consensus 687 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~~~~~~ 764 (1077)
++++.+++++++..+.++.++........++.+..+++...... .....+ ...+.++.++..++.+++.++...
T Consensus 4 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (529)
T TIGR02868 4 ILPLLQPRTRRLVVAILLGALALGSAVALLGVSAWLISRAAEMP----PVLYLSVAAVAVRAFGIGRAVFRYLERLVGHD 79 (529)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566677776666666666666666667777777776543210 011111 111223445566777788888889
Q ss_pred HHHHHHHHHHHHHHHHHHcCCccccccccCCchhHHHHHhhcHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 001438 765 MGERLTLRVREKMFSAILSNEIGWFDEMDNSSSILASRLESDATLLRTIVVDRSTILIQNFGLVTASFVIAFILNWRITL 844 (1077)
Q Consensus 765 ~~~~~~~~Lr~~l~~~llr~p~~FFD~~~~~~G~IlnR~s~D~~~i~~~l~~~l~~~~~~~~~~~~~i~i~~~~~w~l~l 844 (1077)
.+.++..++|.++|+++++.|.+||++ +++|++++|+++|++.+++.+...+..++..++.+++.++++++++|++++
T Consensus 80 ~~~~~~~~lr~~~~~~ll~~~~~~~~~--~~~g~~~~~l~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l 157 (529)
T TIGR02868 80 AALRSLGRLRVRVYDRLARLALAGRRR--FQTGDLLGRLGADVDALQDLYVRVIVPLVVALVVGSAAVAAIALLSVPAAL 157 (529)
T ss_pred HHHHHHHHHHHHHHHHhhccCcccccc--CChhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 999999999999999999999999995 999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHhhhhhHHHHHHHHhHHHHHHHcchHHHHHhcchHHHHHHHHHHhhhhhHHHHHHHHHH
Q 001438 845 VVVATYPLIISGHISE-KLFFQGYGGNLSKAYLKANMLAAEAVSNIRTVAAFCSEDKVLELYSRELVEPSKRSFIRGQIA 923 (1077)
Q Consensus 845 ~~l~~~Pl~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Etl~Gi~tIrAf~~e~~~~~~f~~~~~~~~~~~~~~~~~~ 923 (1077)
++++.+|++.+..... .+..+...++.++...+....+.|+++|+++||+|+.|+++.++|.+..++..+...+.....
T Consensus 158 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (529)
T TIGR02868 158 VLAAGLLLAGFVAPLVSLRAARAAEVALARLRSQLYQQLTDALDGAADLVAYGALDPALAQVEAADRELLAAERRAARAT 237 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhccHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9888878776554333 333344455566677888889999999999999999999999999999999988888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHcCCCCc
Q 001438 924 GIFYGISQFFIFSSYGLALWYGSVLMGKELASFKSVMKSFMVLIVTALAMGETLALVPDLLKGNQMAASVFEVLDRKTQV 1003 (1077)
Q Consensus 924 ~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~l~~~~~~ 1003 (1077)
+...++...+......+++|+|+.++..|.++++.+.++..+......++..+......++++..+.+|+.++++.+++.
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~t~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~ 317 (529)
T TIGR02868 238 GLGAAAQLLAAGLAVLGALWAGGPAVADGTLAPATLAVLVLLPLAAFEAFAPLPAAAQALTRVRAAAERIEEVTGAKGPR 317 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCc
Confidence 88888888888888888899999999999999999999988888888889889989999999999999999999876653
Q ss_pred cCCC---CcccccccccEEEeeeeeeCCCCCcccccccceeeeeCCCEEEEECCCCCCHHHHHHHHhhccCCCCCCC
Q 001438 1004 IGDI---GEELTNVEGTIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKA 1077 (1077)
Q Consensus 1004 ~~~~---~~~~~~~~G~I~f~nVsf~Y~~~~~~~VLk~vsl~I~~GekVaIVGrTGsGKSTLi~lL~Rfyd~~~G~i 1077 (1077)
+... +...++..|+|+|+||+|+||+++ +||+|+||+|+|||++|||||||||||||+++|.|+|+|++|+|
T Consensus 318 ~~~~~~~~~~~~~~~~~I~~~~vsf~Y~~~~--~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I 392 (529)
T TIGR02868 318 PEGVVPAAGALGLGKPTLELRDLSFGYPGSP--PVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPLQGEV 392 (529)
T ss_pred CCCCCCCCcccCCCCceEEEEEEEEecCCCC--ceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEE
Confidence 3211 111223457899999999998643 48999999999999999999999999999999999999999986
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. |
| >PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-42 Score=416.23 Aligned_cols=209 Identities=24% Similarity=0.315 Sum_probs=173.3
Q ss_pred cEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHHHhhhe
Q 001438 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQI 460 (1077)
Q Consensus 381 ~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i 460 (1077)
.|+++|++++|++. .+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.+
T Consensus 3 ~l~~~~l~~~~~~~---~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~~G~i~~~~~~~~~~~~~~~~~~i 79 (490)
T PRK10938 3 SLQISQGTFRLSDT---KTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGERQSQFSHITRLSFEQLQKLV 79 (490)
T ss_pred eEEEEeEEEEcCCe---eecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCceEEECCcccccCCHHHHHHHh
Confidence 38999999999642 489999999999999999999999999999999999999999999999888776666777789
Q ss_pred eEEccCCCc--c-------cccHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHH
Q 001438 461 GLVNQEPAL--F-------ATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAI 531 (1077)
Q Consensus 461 ~~v~Q~~~l--f-------~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~l 531 (1077)
+|++|++.+ + ..|++||+.++. ...+++.+++ + .+ |++........+||||||||++|
T Consensus 80 ~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l------~---~~--~l~~~~~~~~~~LSgG~~qrv~l 146 (490)
T PRK10938 80 SDEWQRNNTDMLSPGEDDTGRTTAEIIQDEV--KDPARCEQLA------Q---QF--GITALLDRRFKYLSTGETRKTLL 146 (490)
T ss_pred ceeccCcchhhcccchhhccccHHHhcccch--hHHHHHHHHH------H---Hc--CCHhhhhCCcccCCHHHHHHHHH
Confidence 999998753 2 348899876531 1111222222 2 22 23333455677899999999999
Q ss_pred HHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCeEEEEccCchhHhh-cCEEEEEECCEEEEecChhHH
Q 001438 532 SRAIVKNPSILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEEL 605 (1077)
Q Consensus 532 ARal~~~p~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l 605 (1077)
|||++.+|++|||||||++||+.+.+.+.+.|+++. +|+|+|++||+++.+.. ||+|++|++|+++..|+++++
T Consensus 147 a~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 222 (490)
T PRK10938 147 CQALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQSGITLVLVLNRFDEIPDFVQFAGVLADCTLAETGEREEI 222 (490)
T ss_pred HHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECCEEEEeCCHHHH
Confidence 999999999999999999999999999999998874 47899999999999866 999999999999988776554
|
|
| >PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-42 Score=416.49 Aligned_cols=209 Identities=27% Similarity=0.454 Sum_probs=172.5
Q ss_pred cEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCH-HHHhhh
Q 001438 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDL-KWLRQQ 459 (1077)
Q Consensus 381 ~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~-~~~r~~ 459 (1077)
.++++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+. ..+|++
T Consensus 4 ~l~~~~l~~~~~~---~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~ 80 (501)
T PRK11288 4 YLSFDGIGKTFPG---VKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAALAAG 80 (501)
T ss_pred eEEEeeeEEEECC---EEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHhCC
Confidence 4899999999964 358999999999999999999999999999999999999999999999999875543 456778
Q ss_pred eeEEccCCCcccc-cHHHHHhcCCCC-----CCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHH
Q 001438 460 IGLVNQEPALFAT-TIRENILYGKDD-----ATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISR 533 (1077)
Q Consensus 460 i~~v~Q~~~lf~~-ti~~ni~~~~~~-----~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lAR 533 (1077)
|+|++|++.+++. |++||+.++... ...++..+ +.... ++.+ |++........+||||||||++|||
T Consensus 81 i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~--~~~~~---l~~~--~l~~~~~~~~~~LSgGq~qrv~lar 153 (501)
T PRK11288 81 VAIIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNY--EAREQ---LEHL--GVDIDPDTPLKYLSIGQRQMVEIAK 153 (501)
T ss_pred EEEEEechhccCCCCHHHHHHhcccccccCCCCHHHHHH--HHHHH---HHHc--CCCCCcCCchhhCCHHHHHHHHHHH
Confidence 9999999998876 999999986421 11222111 11122 2222 2222334566789999999999999
Q ss_pred HhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCeEEEEccCchhHhh-cCEEEEEECCEEEEe
Q 001438 534 AIVKNPSILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKT 599 (1077)
Q Consensus 534 al~~~p~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~ 599 (1077)
|++.+|+++||||||++||+.+.+.+.+.|+++. +|+|+|+|||+++.+.. ||+|++|++|++++.
T Consensus 154 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiiitHd~~~~~~~~d~i~~l~~G~i~~~ 221 (501)
T PRK11288 154 ALARNARVIAFDEPTSSLSAREIEQLFRVIRELRAEGRVILYVSHRMEEIFALCDAITVFKDGRYVAT 221 (501)
T ss_pred HHHhCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEee
Confidence 9999999999999999999999999999998874 58999999999999865 999999999998753
|
|
| >PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-43 Score=395.46 Aligned_cols=223 Identities=30% Similarity=0.500 Sum_probs=185.8
Q ss_pred cEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHHHhhhe
Q 001438 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQI 460 (1077)
Q Consensus 381 ~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i 460 (1077)
.++++|++++|++ +..+|+|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++.+.+.. ++.|
T Consensus 3 ~l~i~~l~~~~~~--~~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~--~r~i 78 (356)
T PRK11650 3 GLKLQAVRKSYDG--KTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEPA--DRDI 78 (356)
T ss_pred EEEEEeEEEEeCC--CCEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHH--HCCE
Confidence 4899999999942 24589999999999999999999999999999999999999999999999999877654 4689
Q ss_pred eEEccCCCcccc-cHHHHHhcCCCC--CCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHHhcc
Q 001438 461 GLVNQEPALFAT-TIRENILYGKDD--ATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVK 537 (1077)
Q Consensus 461 ~~v~Q~~~lf~~-ti~~ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~~ 537 (1077)
|||+|++.+|+. |++|||.|+... .+.++..+ +...+ ++.+ |++........+||||||||++|||||+.
T Consensus 79 g~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~--~~~~~---l~~~--gL~~~~~~~~~~LSgGq~QRvalARAL~~ 151 (356)
T PRK11650 79 AMVFQNYALYPHMSVRENMAYGLKIRGMPKAEIEE--RVAEA---ARIL--ELEPLLDRKPRELSGGQRQRVAMGRAIVR 151 (356)
T ss_pred EEEeCCccccCCCCHHHHHHhHHhhcCCCHHHHHH--HHHHH---HHHc--CChhHhhCChhhCCHHHHHHHHHHHHHhc
Confidence 999999999975 999999987532 12222211 11111 1111 33444556677999999999999999999
Q ss_pred CCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCeEEEEccCchhHh-hcCEEEEEECCEEEEecChhHHhcCCCchHH
Q 001438 538 NPSILLLDEATSALDAESENSVQEALDRVMV--GRTTVVVAHRLSTIR-NADVIAVVQGRKIVKTGSHEELISNPNSAYA 614 (1077)
Q Consensus 538 ~p~illlDEpts~lD~~~~~~i~~~l~~~~~--~~t~i~vtH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~ 614 (1077)
+|++||||||||+||+.+++.+.+.|+++.+ +.|+|+|||+++.+. .||+|++|++|++++.|+++++.+++...|.
T Consensus 152 ~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~l~D~i~vl~~G~i~~~g~~~~~~~~p~~~~~ 231 (356)
T PRK11650 152 EPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQVEAMTLADRVVVMNGGVAEQIGTPVEVYEKPASTFV 231 (356)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEECCHHHHHhCCccHHH
Confidence 9999999999999999999999999988753 799999999999875 5999999999999999999999887654443
|
|
| >cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-43 Score=375.27 Aligned_cols=219 Identities=50% Similarity=0.840 Sum_probs=194.2
Q ss_pred CcccEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHHHh
Q 001438 378 LSGHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLR 457 (1077)
Q Consensus 378 ~~~~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r 457 (1077)
..+.++++|++++|+++.+.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+....+
T Consensus 8 ~~~~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~ 87 (226)
T cd03248 8 LKGIVKFQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYLH 87 (226)
T ss_pred cCceEEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCCchHHcCHHHHH
Confidence 45679999999999753234689999999999999999999999999999999999999999999999998877777778
Q ss_pred hheeEEccCCCcccccHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHHhcc
Q 001438 458 QQIGLVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVK 537 (1077)
Q Consensus 458 ~~i~~v~Q~~~lf~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~~ 537 (1077)
++++|++|++.+|+.|++||+.++.......+..+........++++.+|.|+++.+++++.+||||||||++||||+++
T Consensus 88 ~~i~~~~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG~~qrv~laral~~ 167 (226)
T cd03248 88 SKVSLVGQEPVLFARSLQDNIAYGLQSCSFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARALIR 167 (226)
T ss_pred hhEEEEecccHHHhhhHHHHhccccCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhc
Confidence 89999999999999999999988754444444444444445567788888889888999999999999999999999999
Q ss_pred CCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEccCchhHhhcCEEEEEECCEE
Q 001438 538 NPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRNADVIAVVQGRKI 596 (1077)
Q Consensus 538 ~p~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~vtH~~~~~~~~d~i~~l~~G~i 596 (1077)
+|+++||||||++||+++.+.+.+.|+++.+++|+|++||+++.+..||+|++|++|++
T Consensus 168 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~i 226 (226)
T cd03248 168 NPQVLILDEATSALDAESEQQVQQALYDWPERRTVLVIAHRLSTVERADQILVLDGGRI 226 (226)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHhCCEEEEecCCcC
Confidence 99999999999999999999999999988777999999999999988999999999974
|
Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. |
| >PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-43 Score=393.80 Aligned_cols=223 Identities=31% Similarity=0.514 Sum_probs=186.2
Q ss_pred ccEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHHHhhh
Q 001438 380 GHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQ 459 (1077)
Q Consensus 380 ~~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~ 459 (1077)
..|+++|++++|++ ..+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.+||+++.+.+.. +++
T Consensus 5 ~~l~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~--~r~ 79 (351)
T PRK11432 5 NFVVLKNITKRFGS---NTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSIQ--QRD 79 (351)
T ss_pred cEEEEEeEEEEECC---eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHH--HCC
Confidence 36899999999963 3589999999999999999999999999999999999999999999999999876543 568
Q ss_pred eeEEccCCCcccc-cHHHHHhcCCCC--CCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHHhc
Q 001438 460 IGLVNQEPALFAT-TIRENILYGKDD--ATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIV 536 (1077)
Q Consensus 460 i~~v~Q~~~lf~~-ti~~ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~ 536 (1077)
||||+|++.+|+. |++|||.|+... ...++..+. ...+.+.+ |+.......+.+||||||||++|||||+
T Consensus 80 ig~vfQ~~~lfp~~tv~eNi~~~l~~~~~~~~~~~~~--v~~~l~~~-----gl~~~~~r~~~~LSgGq~QRVaLARaL~ 152 (351)
T PRK11432 80 ICMVFQSYALFPHMSLGENVGYGLKMLGVPKEERKQR--VKEALELV-----DLAGFEDRYVDQISGGQQQRVALARALI 152 (351)
T ss_pred EEEEeCCcccCCCCCHHHHHHHHHhHcCCCHHHHHHH--HHHHHHHc-----CCchhhcCChhhCCHHHHHHHHHHHHHH
Confidence 9999999999976 999999987531 122222111 11111111 2233345567899999999999999999
Q ss_pred cCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCeEEEEccCchhHh-hcCEEEEEECCEEEEecChhHHhcCCCchH
Q 001438 537 KNPSILLLDEATSALDAESENSVQEALDRVMV--GRTTVVVAHRLSTIR-NADVIAVVQGRKIVKTGSHEELISNPNSAY 613 (1077)
Q Consensus 537 ~~p~illlDEpts~lD~~~~~~i~~~l~~~~~--~~t~i~vtH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~ 613 (1077)
.+|++||||||||+||+.+++.+.+.|+++.+ ++|+|+|||+.+.+. .||+|++|++|++++.|+++++..++...|
T Consensus 153 ~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~e~~~laD~i~vm~~G~i~~~g~~~~~~~~p~~~~ 232 (351)
T PRK11432 153 LKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQSEAFAVSDTVIVMNKGKIMQIGSPQELYRQPASRF 232 (351)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCCCchH
Confidence 99999999999999999999999999988753 899999999999875 599999999999999999999988766544
Q ss_pred H
Q 001438 614 A 614 (1077)
Q Consensus 614 ~ 614 (1077)
.
T Consensus 233 ~ 233 (351)
T PRK11432 233 M 233 (351)
T ss_pred H
Confidence 3
|
|
| >cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-43 Score=376.31 Aligned_cols=217 Identities=35% Similarity=0.555 Sum_probs=181.6
Q ss_pred EEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCH---HHHhh
Q 001438 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDL---KWLRQ 458 (1077)
Q Consensus 382 i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~---~~~r~ 458 (1077)
++++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. ..+|+
T Consensus 1 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 77 (235)
T cd03261 1 IELRGLTKSFGG---RTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLRR 77 (235)
T ss_pred CeEEEEEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChhhHHHHhc
Confidence 478999999963 358999999999999999999999999999999999999999999999999887654 56788
Q ss_pred heeEEccCCCcccc-cHHHHHhcCCC---CCCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHH
Q 001438 459 QIGLVNQEPALFAT-TIRENILYGKD---DATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRA 534 (1077)
Q Consensus 459 ~i~~v~Q~~~lf~~-ti~~ni~~~~~---~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARa 534 (1077)
.++|+||++.+|+. |++||+.++.. ..+.++..+. ...+.+. + |+.........+||||||||++||||
T Consensus 78 ~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~--~~~~l~~---~--~l~~~~~~~~~~LSgG~~qrv~ia~a 150 (235)
T cd03261 78 RMGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREI--VLEKLEA---V--GLRGAEDLYPAELSGGMKKRVALARA 150 (235)
T ss_pred ceEEEccCcccCCCCcHHHHHHHHHhhccCCCHHHHHHH--HHHHHHH---c--CCchhhcCChhhCCHHHHHHHHHHHH
Confidence 89999999999986 99999987632 1222222211 1112222 2 23333455667899999999999999
Q ss_pred hccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh--CCCeEEEEccCchhHhh-cCEEEEEECCEEEEecChhHHhcC
Q 001438 535 IVKNPSILLLDEATSALDAESENSVQEALDRVM--VGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELISN 608 (1077)
Q Consensus 535 l~~~p~illlDEpts~lD~~~~~~i~~~l~~~~--~~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 608 (1077)
++.+|+++||||||++||+.+++.+.+.|+++. .++|+|+|||+++.+.. ||+|++|++|++++.|+++++...
T Consensus 151 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 227 (235)
T cd03261 151 LALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGTPEELRAS 227 (235)
T ss_pred HhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhcCEEEEEECCeEEEecCHHHHcCC
Confidence 999999999999999999999999999998874 37999999999998865 999999999999999999998754
|
The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-41 Score=442.50 Aligned_cols=207 Identities=22% Similarity=0.264 Sum_probs=169.2
Q ss_pred cccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhccc----CCCccEEEECCeeCCCCCHHHHhhheeEEccCCCcccc
Q 001438 397 VAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFY----EPLSGEILLDGNNIKGLDLKWLRQQIGLVNQEPALFAT 472 (1077)
Q Consensus 397 ~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~----~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ 472 (1077)
+.+|+|+|+++++||+++|+||||||||||+++|+|.. .|.+|+|.+||+++.+.. ...|+.++||+|++.+++.
T Consensus 74 ~~iL~~vs~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~-~~~r~~i~yv~Q~d~~~~~ 152 (1394)
T TIGR00956 74 FDILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIK-KHYRGDVVYNAETDVHFPH 152 (1394)
T ss_pred ceeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHH-hhcCceeEEeccccccCCC
Confidence 46899999999999999999999999999999999986 579999999999886543 3456779999999988876
Q ss_pred -cHHHHHhcCCC---------CCCHHHHHHHHHHHhHHHHHhcCccchhhhhcC-CCCCCChHHHHHHHHHHHhccCCCE
Q 001438 473 -TIRENILYGKD---------DATMEEITRAAKLSEAMSFISNLPERFETQVGE-RGIQLSGGQKQRIAISRAIVKNPSI 541 (1077)
Q Consensus 473 -ti~~ni~~~~~---------~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~-~g~~LSgGqkqri~lARal~~~p~i 541 (1077)
||+||+.|+.. ..+.++..+.. .....+.+ ++.+-.+|.+|+ ....||||||||++|||||+.+|+|
T Consensus 153 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~l-gL~~~~~t~vg~~~~~~LSGGerkRvsIA~aL~~~p~v 230 (1394)
T TIGR00956 153 LTVGETLDFAARCKTPQNRPDGVSREEYAKHI-ADVYMATY-GLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKI 230 (1394)
T ss_pred CCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHH-HHHHHHHc-CcccccCceeCCCcCCCCCcccchHHHHHHHHHhCCCE
Confidence 99999988521 11222211110 01122222 455666788875 5678999999999999999999999
Q ss_pred EEEeCcCCCCCHHHHHHHHHHHHHHh--CCCeEEEEccCc-hhH-hhcCEEEEEECCEEEEecChhHHh
Q 001438 542 LLLDEATSALDAESENSVQEALDRVM--VGRTTVVVAHRL-STI-RNADVIAVVQGRKIVKTGSHEELI 606 (1077)
Q Consensus 542 lllDEpts~lD~~~~~~i~~~l~~~~--~~~t~i~vtH~~-~~~-~~~d~i~~l~~G~i~~~g~~~~l~ 606 (1077)
++|||||++||+.+...+.+.|+++. .|+|+|+++|++ +.+ +.+|+|++|++|+++..|+++++.
T Consensus 231 lllDEPTsgLD~~~~~~i~~~L~~la~~~g~tvii~~Hq~~~~i~~l~D~v~~L~~G~iv~~G~~~~~~ 299 (1394)
T TIGR00956 231 QCWDNATRGLDSATALEFIRALKTSANILDTTPLVAIYQCSQDAYELFDKVIVLYEGYQIYFGPADKAK 299 (1394)
T ss_pred EEEeCCCCCcCHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEeCCeEEEECCHHHHH
Confidence 99999999999999999999999875 389999999997 455 459999999999999999998874
|
|
| >TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-43 Score=394.04 Aligned_cols=212 Identities=34% Similarity=0.512 Sum_probs=179.2
Q ss_pred cccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHHH----hhheeEEccCCCcccc
Q 001438 397 VAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWL----RQQIGLVNQEPALFAT 472 (1077)
Q Consensus 397 ~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~----r~~i~~v~Q~~~lf~~ 472 (1077)
+.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++...+..++ |++++||+|++++|+.
T Consensus 6 ~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l~~~ 85 (363)
T TIGR01186 6 KKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFALFPH 85 (363)
T ss_pred ceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCcCCCC
Confidence 358999999999999999999999999999999999999999999999999999888777 7789999999999985
Q ss_pred -cHHHHHhcCCCC--CCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHHhccCCCEEEEeCcCC
Q 001438 473 -TIRENILYGKDD--ATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATS 549 (1077)
Q Consensus 473 -ti~~ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~~~p~illlDEpts 549 (1077)
|++|||.++... ...++..+ +...+ ++.+ |++...+..+.+||||||||++|||||+.+|+|+|||||||
T Consensus 86 ~TV~eNi~~~~~~~~~~~~~~~~--~~~~~---l~~v--gL~~~~~~~p~~LSGGq~QRV~lARAL~~~p~iLLlDEP~s 158 (363)
T TIGR01186 86 MTILQNTSLGPELLGWPEQERKE--KALEL---LKLV--GLEEYEHRYPDELSGGMQQRVGLARALAAEPDILLMDEAFS 158 (363)
T ss_pred CCHHHHHHHHHHHcCCCHHHHHH--HHHHH---HHhc--CCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcc
Confidence 999999986432 12222111 11111 1111 34455677788999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHh--CCCeEEEEccCchhHh-hcCEEEEEECCEEEEecChhHHhcCCCchHHH
Q 001438 550 ALDAESENSVQEALDRVM--VGRTTVVVAHRLSTIR-NADVIAVVQGRKIVKTGSHEELISNPNSAYAA 615 (1077)
Q Consensus 550 ~lD~~~~~~i~~~l~~~~--~~~t~i~vtH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~ 615 (1077)
+||+.+++.+++.+.++. .++|+|+|||+++.+. .||+|++|++|++++.|++++++.++...|..
T Consensus 159 aLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~ea~~~~drI~vl~~G~iv~~g~~~ei~~~p~~~~~~ 227 (363)
T TIGR01186 159 ALDPLIRDSMQDELKKLQATLQKTIVFITHDLDEAIRIGDRIVIMKAGEIVQVGTPDEILRNPANEYVE 227 (363)
T ss_pred cCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEeeCCHHHHHhCcccHHHH
Confidence 999999999999998874 3899999999999864 59999999999999999999998876555543
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact |
| >TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-42 Score=393.23 Aligned_cols=221 Identities=29% Similarity=0.492 Sum_probs=186.9
Q ss_pred cEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHHHhhhe
Q 001438 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQI 460 (1077)
Q Consensus 381 ~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i 460 (1077)
.++++|++++|++ ..+|+|+||++++||+++|+||||||||||+++|+|+.+|++|+|.+||+++.+.+.. ++.+
T Consensus 4 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~--~r~i 78 (353)
T TIGR03265 4 YLSIDNIRKRFGA---FTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQ--KRDY 78 (353)
T ss_pred EEEEEEEEEEeCC---eEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHH--HCCE
Confidence 4899999999974 3589999999999999999999999999999999999999999999999999876653 5689
Q ss_pred eEEccCCCcccc-cHHHHHhcCCCC--CCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHHhcc
Q 001438 461 GLVNQEPALFAT-TIRENILYGKDD--ATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVK 537 (1077)
Q Consensus 461 ~~v~Q~~~lf~~-ti~~ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~~ 537 (1077)
|||+|++.+|+. |++||+.|+... .+.++..+ +..++ ++.+ |++......+.+||||||||++|||||+.
T Consensus 79 g~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~--~~~~~---l~~l--~L~~~~~~~~~~LSgGq~QRvaLARaL~~ 151 (353)
T TIGR03265 79 GIVFQSYALFPNLTVADNIAYGLKNRGMGRAEVAE--RVAEL---LDLV--GLPGSERKYPGQLSGGQQQRVALARALAT 151 (353)
T ss_pred EEEeCCcccCCCCcHHHHHHHHHHhcCCCHHHHHH--HHHHH---HHHc--CCCchhhCChhhCCHHHHHHHHHHHHHhc
Confidence 999999999975 999999987532 12222111 11122 2222 34445567788999999999999999999
Q ss_pred CCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCeEEEEccCchhHh-hcCEEEEEECCEEEEecChhHHhcCCCchH
Q 001438 538 NPSILLLDEATSALDAESENSVQEALDRVMV--GRTTVVVAHRLSTIR-NADVIAVVQGRKIVKTGSHEELISNPNSAY 613 (1077)
Q Consensus 538 ~p~illlDEpts~lD~~~~~~i~~~l~~~~~--~~t~i~vtH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~ 613 (1077)
+|+++|||||||+||+.+++.+.+.|+++.+ +.|+|+|||+++.+. .||+|++|++|++++.|+++++.+++...|
T Consensus 152 ~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~ea~~l~d~i~vl~~G~i~~~g~~~~~~~~p~~~~ 230 (353)
T TIGR03265 152 SPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQEEALSMADRIVVMNHGVIEQVGTPQEIYRHPATPF 230 (353)
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCCCCHH
Confidence 9999999999999999999999999988753 799999999999875 499999999999999999999998766554
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely. |
| >PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-42 Score=392.02 Aligned_cols=225 Identities=35% Similarity=0.597 Sum_probs=186.4
Q ss_pred EEEEeEEEEcCCCC-CcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHH---Hh
Q 001438 382 IEFKDVSFCYPSRP-DVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKW---LR 457 (1077)
Q Consensus 382 i~~~~v~~~y~~~~-~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~---~r 457 (1077)
|+++|++++|+... +.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++..++..+ +|
T Consensus 2 i~i~~l~~~y~~~~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~ 81 (343)
T PRK11153 2 IELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRKAR 81 (343)
T ss_pred EEEEeEEEEeCCCCCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHh
Confidence 78999999997311 346999999999999999999999999999999999999999999999999998876544 47
Q ss_pred hheeEEccCCCccc-ccHHHHHhcCCC--CCCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHH
Q 001438 458 QQIGLVNQEPALFA-TTIRENILYGKD--DATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRA 534 (1077)
Q Consensus 458 ~~i~~v~Q~~~lf~-~ti~~ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARa 534 (1077)
++|+|++|++.+|+ .|++||+.++.. ..+.++..+ +...+ ++.+ |++........+||||||||++||||
T Consensus 82 ~~ig~v~q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~--~~~~~---l~~~--gL~~~~~~~~~~LSgGq~qRv~lAra 154 (343)
T PRK11153 82 RQIGMIFQHFNLLSSRTVFDNVALPLELAGTPKAEIKA--RVTEL---LELV--GLSDKADRYPAQLSGGQKQRVAIARA 154 (343)
T ss_pred cCEEEEeCCCccCCCCcHHHHHHHHHHHcCCCHHHHHH--HHHHH---HHHc--CCchhhhCChhhCCHHHHHHHHHHHH
Confidence 78999999999987 599999987632 122222211 11112 2222 33344556677999999999999999
Q ss_pred hccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh--CCCeEEEEccCchhHhh-cCEEEEEECCEEEEecChhHHhcCCCc
Q 001438 535 IVKNPSILLLDEATSALDAESENSVQEALDRVM--VGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELISNPNS 611 (1077)
Q Consensus 535 l~~~p~illlDEpts~lD~~~~~~i~~~l~~~~--~~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~~~ 611 (1077)
|+.+|++|||||||++||+.+.+.+.+.|+++. .|+|+|++||+++.+.. ||+|++|++|++++.|+++++..++..
T Consensus 155 L~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~~i~~~~d~v~~l~~G~i~~~g~~~~~~~~~~~ 234 (343)
T PRK11153 155 LASNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMDVVKRICDRVAVIDAGRLVEQGTVSEVFSHPKH 234 (343)
T ss_pred HHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCCCc
Confidence 999999999999999999999999999999874 37999999999999875 999999999999999999999876443
Q ss_pred hH
Q 001438 612 AY 613 (1077)
Q Consensus 612 ~~ 613 (1077)
.+
T Consensus 235 ~~ 236 (343)
T PRK11153 235 PL 236 (343)
T ss_pred HH
Confidence 33
|
|
| >PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-42 Score=381.39 Aligned_cols=221 Identities=29% Similarity=0.522 Sum_probs=185.5
Q ss_pred cEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHHHhhhe
Q 001438 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQI 460 (1077)
Q Consensus 381 ~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i 460 (1077)
.++++|++++|++....++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+...+|+++
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i 83 (279)
T PRK13650 4 IIEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIRHKI 83 (279)
T ss_pred eEEEEeEEEEcCCCCcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHHhhc
Confidence 48999999999743224589999999999999999999999999999999999999999999999999887777888899
Q ss_pred eEEccCCC--cccccHHHHHhcCCCC--CCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHHhc
Q 001438 461 GLVNQEPA--LFATTIRENILYGKDD--ATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIV 536 (1077)
Q Consensus 461 ~~v~Q~~~--lf~~ti~~ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~ 536 (1077)
+|++|+|. ++..|++|||.++... .+.++..+. ...+.+. + |++........+||||||||++||||++
T Consensus 84 ~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~--~~~~l~~---~--gL~~~~~~~~~~LSgGq~qrv~lAral~ 156 (279)
T PRK13650 84 GMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKER--VNEALEL---V--GMQDFKEREPARLSGGQKQRVAIAGAVA 156 (279)
T ss_pred eEEEcChHHhcccccHHHHHHhhHHhCCCCHHHHHHH--HHHHHHH---C--CCHhHhhCCcccCCHHHHHHHHHHHHHH
Confidence 99999984 4567999999987422 222222111 1112221 1 3334455667799999999999999999
Q ss_pred cCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh--CCCeEEEEccCchhHhhcCEEEEEECCEEEEecChhHHhcC
Q 001438 537 KNPSILLLDEATSALDAESENSVQEALDRVM--VGRTTVVVAHRLSTIRNADVIAVVQGRKIVKTGSHEELISN 608 (1077)
Q Consensus 537 ~~p~illlDEpts~lD~~~~~~i~~~l~~~~--~~~t~i~vtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~ 608 (1077)
.+|++|||||||++||+.+.+.+.+.|+++. .|+|+|++||+++.+..||+|++|++|++++.|+++++...
T Consensus 157 ~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~ 230 (279)
T PRK13650 157 MRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLDEVALSDRVLVMKNGQVESTSTPRELFSR 230 (279)
T ss_pred cCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEEECCHHHHHcC
Confidence 9999999999999999999999999999875 38999999999999878999999999999999999988754
|
|
| >PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-39 Score=396.20 Aligned_cols=389 Identities=16% Similarity=0.136 Sum_probs=315.5
Q ss_pred HHHHhhcccchHHHHHHHHHHHHHhhHHhHHHHHHHHHHHhhccCchh--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001438 685 IKLYSMVRPDWTYGVCGTICAIIAGAQMPLFALGVSQALVAYYMDWDT--TQREVKKITILFCCAAVITVIVHAIEHLSF 762 (1077)
Q Consensus 685 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 762 (1077)
.+++++.+++++.+..+.++.++..+.....++.+...++........ ..-........+.+++++..++.+++.++.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (574)
T PRK11160 5 LPFLKLYKRHWFMLSLGILLAIVTLLASIGLLTLSGWFLSASAVAGLAGLYSFNYMLPAAGVRGAAIGRTAGRYGERLVS 84 (574)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356677788888777777777777777777777777777654321100 000011112234445566777888888899
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCccccccccCCchhHHHHHhhcHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhHHH
Q 001438 763 GIMGERLTLRVREKMFSAILSNEIGWFDEMDNSSSILASRLESDATLLRTIVVDRSTILIQNFGLVTASFVIAFILNWRI 842 (1077)
Q Consensus 763 ~~~~~~~~~~Lr~~l~~~llr~p~~FFD~~~~~~G~IlnR~s~D~~~i~~~l~~~l~~~~~~~~~~~~~i~i~~~~~w~l 842 (1077)
...+.++..++|.++|+++++.|++||++ .++|++++|+++|++.++..+...+..++..++.++++++++++++|++
T Consensus 85 ~~~~~~~~~~lR~~l~~~l~~~~~~~~~~--~~~g~~~srl~~Dv~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l 162 (574)
T PRK11160 85 HDATFRVLTHLRVFTFSKLLPLSPAGLAR--YRQGDLLNRLVADVDTLDHLYLRLISPLVAALVVILVLTIGLSFFDLTL 162 (574)
T ss_pred HHHHHHHHHHHHHHHHHHhhccChHhhcc--CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999995 9999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHH-HHHHHHHHHhhhhhHHHHHHHHhHHHHHHHcchHHHHHhcchHHHHHHHHHHhhhhhHHHHHHHH
Q 001438 843 TLVVVATYPLIISG-HISEKLFFQGYGGNLSKAYLKANMLAAEAVSNIRTVAAFCSEDKVLELYSRELVEPSKRSFIRGQ 921 (1077)
Q Consensus 843 ~l~~l~~~Pl~i~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~Etl~Gi~tIrAf~~e~~~~~~f~~~~~~~~~~~~~~~~ 921 (1077)
+++++.++|+.++. ..+..+..++..++.++...+.+..+.|+++|+++||+|+.|+++.++|.+..++..+...+...
T Consensus 163 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 242 (574)
T PRK11160 163 ALTLGGILLLLLLLLPLLFYRLGKKPGQDLTHLRAQYRVQLTEWLQGQAELTLFGAEDRYRQQLEQTEQQWLAAQRRQAN 242 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHCCHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99988888876543 34455666666777788888899999999999999999999999999999999999999888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHH-HHHHHHHHHhhhhhHHHHHHHHHHHHHHHcCC
Q 001438 922 IAGIFYGISQFFIFSSYGLALWYGSVLMGKELASFKSVMKSFMVLIV-TALAMGETLALVPDLLKGNQMAASVFEVLDRK 1000 (1077)
Q Consensus 922 ~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~ri~~~l~~~ 1000 (1077)
..+...++...+.....++++++|+.++ .|.++.+.+++++.+... ...++..+......++++..+.+|+.++++.+
T Consensus 243 ~~~~~~~~~~~~~~~~~~~i~~~g~~~~-~g~~t~g~l~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~s~~ri~~ll~~~ 321 (574)
T PRK11160 243 LTGLSQALMILANGLTVVLMLWLAAGGV-GGNAQPGALIALFVFAALAAFEALMPVAGAFQHLGQVIASARRINEITEQK 321 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 8888888888888888888899999884 788899998887666533 34566777778889999999999999999987
Q ss_pred CCccCCCCcccccccccEEEeeeeeeCCCCCcccccccceeeeeCCCEEEEECCCCCCHHHHHHHHhhccCCCCCCC
Q 001438 1001 TQVIGDIGEELTNVEGTIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKA 1077 (1077)
Q Consensus 1001 ~~~~~~~~~~~~~~~G~I~f~nVsf~Y~~~~~~~VLk~vsl~I~~GekVaIVGrTGsGKSTLi~lL~Rfyd~~~G~i 1077 (1077)
++.+........+..|.|+|+||+|+||+. +.++|+|+||+|+|||++|||||||||||||+++|.|+|+|++|+|
T Consensus 322 ~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~-~~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~~G~I 397 (574)
T PRK11160 322 PEVTFPTTSTAAADQVSLTLNNVSFTYPDQ-PQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEI 397 (574)
T ss_pred CCCCCCcccCCCCCCCeEEEEEEEEECCCC-CCcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceE
Confidence 654322111122346899999999999754 2358999999999999999999999999999999999999999986
|
|
| >PRK15064 ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-41 Score=410.12 Aligned_cols=208 Identities=21% Similarity=0.404 Sum_probs=165.2
Q ss_pred EEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHHHhhhee
Q 001438 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIG 461 (1077)
Q Consensus 382 i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 461 (1077)
|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|. .+|+
T Consensus 2 l~i~~ls~~~~~---~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~i~ 67 (530)
T PRK15064 2 LSTANITMQFGA---KPLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPSAGNVSLDPN-----------ERLG 67 (530)
T ss_pred EEEEEEEEEeCC---cEeEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCC-----------CEEE
Confidence 789999999964 35999999999999999999999999999999999999999999999873 3599
Q ss_pred EEccCCCcccc-cHHHHHhcCCCCC----------------CHHH---HHHH----------HHHHhHHHHHhcCccchh
Q 001438 462 LVNQEPALFAT-TIRENILYGKDDA----------------TMEE---ITRA----------AKLSEAMSFISNLPERFE 511 (1077)
Q Consensus 462 ~v~Q~~~lf~~-ti~~ni~~~~~~~----------------~~~~---~~~~----------~~~~~~~~~i~~l~~g~~ 511 (1077)
|++|++.++.. |++||+.++.... ..+. +.+. .......+.++.+ |++
T Consensus 68 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--gl~ 145 (530)
T PRK15064 68 KLRQDQFAFEEFTVLDTVIMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGV--GIP 145 (530)
T ss_pred EEeccCCcCCCCcHHHHHHHhhHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhC--CCC
Confidence 99999988865 9999998753100 0000 0000 0001111223322 232
Q ss_pred hhh-cCCCCCCChHHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEccCchhHhh-cCEEE
Q 001438 512 TQV-GERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRN-ADVIA 589 (1077)
Q Consensus 512 t~~-~~~g~~LSgGqkqri~lARal~~~p~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~vtH~~~~~~~-~d~i~ 589 (1077)
... .....+||||||||++|||||+.+|++|||||||++||+++.+.+.+.|++ .+.|+|+|||+++.+.. ||+|+
T Consensus 146 ~~~~~~~~~~LSgGq~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~--~~~tiiivsHd~~~~~~~~d~i~ 223 (530)
T PRK15064 146 EEQHYGLMSEVAPGWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNE--RNSTMIIISHDRHFLNSVCTHMA 223 (530)
T ss_pred hhHhcCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHh--CCCeEEEEeCCHHHHHhhcceEE
Confidence 212 235678999999999999999999999999999999999999999999874 47899999999999865 99999
Q ss_pred EEECCEEE-EecChhHHhc
Q 001438 590 VVQGRKIV-KTGSHEELIS 607 (1077)
Q Consensus 590 ~l~~G~i~-~~g~~~~l~~ 607 (1077)
+|++|+++ ..|++++.++
T Consensus 224 ~l~~g~i~~~~g~~~~~~~ 242 (530)
T PRK15064 224 DLDYGELRVYPGNYDEYMT 242 (530)
T ss_pred EEeCCEEEEecCCHHHHHH
Confidence 99999994 7888877653
|
|
| >cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-42 Score=373.08 Aligned_cols=214 Identities=37% Similarity=0.629 Sum_probs=176.5
Q ss_pred EEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhccc-----CCCccEEEECCeeCCCCC--HH
Q 001438 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFY-----EPLSGEILLDGNNIKGLD--LK 454 (1077)
Q Consensus 382 i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~-----~~~~G~i~~~g~~~~~~~--~~ 454 (1077)
|+++|++++|+++ ++|+|+||++++||+++|+||||||||||+++|+|++ +|++|+|.++|+++...+ ..
T Consensus 1 i~~~~l~~~~~~~---~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 77 (227)
T cd03260 1 IELRDLNVYYGDK---HALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVL 77 (227)
T ss_pred CEEEEEEEEcCCc---eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcchHHH
Confidence 4789999999643 5899999999999999999999999999999999999 999999999999988766 55
Q ss_pred HHhhheeEEccCCCcccccHHHHHhcCCCCC---CHHHHHHHHHHHhHHHHHhcCccchhhhhcCC--CCCCChHHHHHH
Q 001438 455 WLRQQIGLVNQEPALFATTIRENILYGKDDA---TMEEITRAAKLSEAMSFISNLPERFETQVGER--GIQLSGGQKQRI 529 (1077)
Q Consensus 455 ~~r~~i~~v~Q~~~lf~~ti~~ni~~~~~~~---~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~--g~~LSgGqkqri 529 (1077)
.+|++++|++|++.+|+.|++||+.++.... ..++..+. ...+ ++.+ |+....... +.+||||||||+
T Consensus 78 ~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~--~~~~---l~~~--~l~~~~~~~~~~~~LSgG~~qrv 150 (227)
T cd03260 78 ELRRRVGMVFQKPNPFPGSIYDNVAYGLRLHGIKLKEELDER--VEEA---LRKA--ALWDEVKDRLHALGLSGGQQQRL 150 (227)
T ss_pred HHHhhEEEEecCchhccccHHHHHHhHHHhcCCCcHHHHHHH--HHHH---HHHc--CCChHHhccCCcccCCHHHHHHH
Confidence 6788999999999999779999998753211 11111111 1111 1111 222222333 479999999999
Q ss_pred HHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEccCchhHhh-cCEEEEEECCEEEEecChhHH
Q 001438 530 AISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEEL 605 (1077)
Q Consensus 530 ~lARal~~~p~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l 605 (1077)
+||||++.+|+++||||||++||+.+++.+.+.|+++.+++|+|++||+++.+.. ||++++|++|++++.|+++++
T Consensus 151 ~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 227 (227)
T cd03260 151 CLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKKEYTIVIVTHNMQQAARVADRTAFLLNGRLVEFGPTEQI 227 (227)
T ss_pred HHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhhCcEEEEEeccHHHHHHhCCEEEEEeCCEEEEecCcccC
Confidence 9999999999999999999999999999999999988655899999999998765 999999999999999987653
|
The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). |
| >PRK14269 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-42 Score=373.09 Aligned_cols=224 Identities=30% Similarity=0.500 Sum_probs=187.0
Q ss_pred cEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccC---CCccEEEECCeeCCCCCHHHHh
Q 001438 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYE---PLSGEILLDGNNIKGLDLKWLR 457 (1077)
Q Consensus 381 ~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~---~~~G~i~~~g~~~~~~~~~~~r 457 (1077)
.|+++|+++.|++ .++|+|+||++++||+++|+||||||||||+++|+|+++ |++|+|.++|+++.+.+....|
T Consensus 2 ~~~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~ 78 (246)
T PRK14269 2 IAKTTNLNLFYGK---KQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALR 78 (246)
T ss_pred ceeeeeeEEEECC---EeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHh
Confidence 3789999999974 358999999999999999999999999999999999984 6999999999999888777888
Q ss_pred hheeEEccCCCcccccHHHHHhcCCCC--C--CHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHH
Q 001438 458 QQIGLVNQEPALFATTIRENILYGKDD--A--TMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISR 533 (1077)
Q Consensus 458 ~~i~~v~Q~~~lf~~ti~~ni~~~~~~--~--~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lAR 533 (1077)
+.++|+||++.+|+.|++||+.++... . ..++. ..+.....+.+ .+++.+.+...+++.+||||||||++|||
T Consensus 79 ~~i~~~~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~--~~~~~~~l~~~-~l~~~~~~~~~~~~~~LS~G~~qrv~lar 155 (246)
T PRK14269 79 KNVGMVFQQPNVFVKSIYENISYAPKLHGMIKNKDEE--EALVVDCLQKV-GLFEEVKDKLKQNALALSGGQQQRLCIAR 155 (246)
T ss_pred hhEEEEecCCccccccHHHHhhhHHhhcCcccChHHH--HHHHHHHHHHc-CCChhhhHHhcCCcccCCHHHHHHHHHHH
Confidence 899999999999999999999875311 0 01111 11112222222 23322234456678899999999999999
Q ss_pred HhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEccCchhHh-hcCEEEEEECCEEEEecChhHHhcCCC
Q 001438 534 AIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIR-NADVIAVVQGRKIVKTGSHEELISNPN 610 (1077)
Q Consensus 534 al~~~p~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~vtH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~~~~ 610 (1077)
|++.+|+++||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+. .||+|++|++|++++.|+++++...+.
T Consensus 156 al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~~ 233 (246)
T PRK14269 156 ALAIKPKLLLLDEPTSALDPISSGVIEELLKELSHNLSMIMVTHNMQQGKRVADYTAFFHLGELIEFGESKEFFENPK 233 (246)
T ss_pred HHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhhCcEEEEEECCEEEEECCHHHHHhCCC
Confidence 99999999999999999999999999999998877899999999999886 499999999999999999999876533
|
|
| >PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-42 Score=380.81 Aligned_cols=222 Identities=32% Similarity=0.550 Sum_probs=183.7
Q ss_pred EEEEeEEEEcCCCC--CcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCC--HHHHh
Q 001438 382 IEFKDVSFCYPSRP--DVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLD--LKWLR 457 (1077)
Q Consensus 382 i~~~~v~~~y~~~~--~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~--~~~~r 457 (1077)
|+++|++++|++.. ..++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+ ...+|
T Consensus 3 l~~~~l~~~y~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 82 (287)
T PRK13637 3 IKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDIR 82 (287)
T ss_pred EEEEEEEEECCCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCccHHHHh
Confidence 78999999997421 136999999999999999999999999999999999999999999999999997754 35678
Q ss_pred hheeEEccCC--CcccccHHHHHhcCCC--CCCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHH
Q 001438 458 QQIGLVNQEP--ALFATTIRENILYGKD--DATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISR 533 (1077)
Q Consensus 458 ~~i~~v~Q~~--~lf~~ti~~ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lAR 533 (1077)
++||||||+| .+|+.|++|||.++.. ..+.++..+.. ..+.+.+ .++ +.+.....+.+||||||||++|||
T Consensus 83 ~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~--~~~l~~~-gL~--~~~~~~~~~~~LSgGq~qrv~iAr 157 (287)
T PRK13637 83 KKVGLVFQYPEYQLFEETIEKDIAFGPINLGLSEEEIENRV--KRAMNIV-GLD--YEDYKDKSPFELSGGQKRRVAIAG 157 (287)
T ss_pred hceEEEecCchhccccccHHHHHHhHHHHCCCCHHHHHHHH--HHHHHHc-CCC--chhhccCCcccCCHHHHHHHHHHH
Confidence 8999999998 5778899999988642 12333222211 1122211 121 113456677899999999999999
Q ss_pred HhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh--CCCeEEEEccCchhHh-hcCEEEEEECCEEEEecChhHHhcC
Q 001438 534 AIVKNPSILLLDEATSALDAESENSVQEALDRVM--VGRTTVVVAHRLSTIR-NADVIAVVQGRKIVKTGSHEELISN 608 (1077)
Q Consensus 534 al~~~p~illlDEpts~lD~~~~~~i~~~l~~~~--~~~t~i~vtH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~~ 608 (1077)
||+.+|++|||||||++||+.+.+.+.+.|+++. .|+|+|++||+++.+. .||||++|++|++++.|+++++.+.
T Consensus 158 aL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~ 235 (287)
T PRK13637 158 VVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSMEDVAKLADRIIVMNKGKCELQGTPREVFKE 235 (287)
T ss_pred HHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhC
Confidence 9999999999999999999999999999999874 3899999999999885 5999999999999999999998654
|
|
| >PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-42 Score=390.89 Aligned_cols=222 Identities=34% Similarity=0.543 Sum_probs=185.8
Q ss_pred ccEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHHHhhh
Q 001438 380 GHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQ 459 (1077)
Q Consensus 380 ~~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~ 459 (1077)
..++++|++++|++ ..+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++.+.+.. ++.
T Consensus 13 ~~L~l~~l~~~~~~---~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~--~r~ 87 (375)
T PRK09452 13 PLVELRGISKSFDG---KEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPAE--NRH 87 (375)
T ss_pred ceEEEEEEEEEECC---eEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHH--HCC
Confidence 45999999999963 3589999999999999999999999999999999999999999999999999876654 467
Q ss_pred eeEEccCCCcccc-cHHHHHhcCCCC--CCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHHhc
Q 001438 460 IGLVNQEPALFAT-TIRENILYGKDD--ATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIV 536 (1077)
Q Consensus 460 i~~v~Q~~~lf~~-ti~~ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~ 536 (1077)
++||+|++.+|+. ||+|||.|+... ....+..+ +.....+.+ |+.........+||||||||++|||||+
T Consensus 88 ig~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~--~~~~~l~~~-----~l~~~~~~~p~~LSgGq~QRVaLARaL~ 160 (375)
T PRK09452 88 VNTVFQSYALFPHMTVFENVAFGLRMQKTPAAEITP--RVMEALRMV-----QLEEFAQRKPHQLSGGQQQRVAIARAVV 160 (375)
T ss_pred EEEEecCcccCCCCCHHHHHHHHHhhcCCCHHHHHH--HHHHHHHHc-----CCchhhhCChhhCCHHHHHHHHHHHHHh
Confidence 9999999999976 999999987531 12222111 111111111 2333445566789999999999999999
Q ss_pred cCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCeEEEEccCchhHh-hcCEEEEEECCEEEEecChhHHhcCCCchH
Q 001438 537 KNPSILLLDEATSALDAESENSVQEALDRVMV--GRTTVVVAHRLSTIR-NADVIAVVQGRKIVKTGSHEELISNPNSAY 613 (1077)
Q Consensus 537 ~~p~illlDEpts~lD~~~~~~i~~~l~~~~~--~~t~i~vtH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~ 613 (1077)
.+|++||||||||+||..+++.+.+.|+++.+ +.|+|+|||+.+.+. .||+|++|++|+|++.|+++++..++...|
T Consensus 161 ~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~i~~~p~~~~ 240 (375)
T PRK09452 161 NKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRDGRIEQDGTPREIYEEPKNLF 240 (375)
T ss_pred cCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCcccHH
Confidence 99999999999999999999999999988753 899999999999875 599999999999999999999998766544
|
|
| >PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-42 Score=381.05 Aligned_cols=221 Identities=25% Similarity=0.499 Sum_probs=183.2
Q ss_pred EEEEeEEEEcCCCC--CcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCC----CCHHH
Q 001438 382 IEFKDVSFCYPSRP--DVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKG----LDLKW 455 (1077)
Q Consensus 382 i~~~~v~~~y~~~~--~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~----~~~~~ 455 (1077)
|+++|++|+|+... .+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|++||.++.. .....
T Consensus 2 i~~~~v~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 81 (288)
T PRK13643 2 IKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKP 81 (288)
T ss_pred EEEEEEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccccccHHH
Confidence 78999999997432 1258999999999999999999999999999999999999999999999999863 33567
Q ss_pred HhhheeEEccCC--CcccccHHHHHhcCCCC--CCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHH
Q 001438 456 LRQQIGLVNQEP--ALFATTIRENILYGKDD--ATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAI 531 (1077)
Q Consensus 456 ~r~~i~~v~Q~~--~lf~~ti~~ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~l 531 (1077)
+|+++|||+|+| .+|+.|+.||+.|+... .+.++..+ +..+..+.+ .++ +........+||||||||++|
T Consensus 82 ~~~~ig~v~q~~~~~l~~~tv~~~l~~~~~~~~~~~~~~~~--~~~~~l~~~-~L~---~~~~~~~~~~LSgGqkqrvai 155 (288)
T PRK13643 82 VRKKVGVVFQFPESQLFEETVLKDVAFGPQNFGIPKEKAEK--IAAEKLEMV-GLA---DEFWEKSPFELSGGQMRRVAI 155 (288)
T ss_pred HHhhEEEEecCcchhcccchHHHHHHhHHHHcCCCHHHHHH--HHHHHHHHc-CCC---hhhccCCcccCCHHHHHHHHH
Confidence 788999999998 78889999999987432 22222221 112222222 121 123456778999999999999
Q ss_pred HHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCeEEEEccCchhHh-hcCEEEEEECCEEEEecChhHHhcC
Q 001438 532 SRAIVKNPSILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLSTIR-NADVIAVVQGRKIVKTGSHEELISN 608 (1077)
Q Consensus 532 ARal~~~p~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~vtH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~~ 608 (1077)
||||+.+|+++||||||++||+.+.+.+.+.|+++. +++|+|++||+++.+. .||+|++|++|++++.|+++++...
T Consensus 156 A~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~vtHd~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~ 234 (288)
T PRK13643 156 AGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMDDVADYADYVYLLEKGHIISCGTPSDVFQE 234 (288)
T ss_pred HHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHHcC
Confidence 999999999999999999999999999999998875 5899999999999885 5999999999999999999998753
|
|
| >TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-42 Score=390.16 Aligned_cols=222 Identities=28% Similarity=0.493 Sum_probs=186.3
Q ss_pred ccEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCc--cEEEECCeeCCCCCHHHHh
Q 001438 380 GHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLS--GEILLDGNNIKGLDLKWLR 457 (1077)
Q Consensus 380 ~~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~--G~i~~~g~~~~~~~~~~~r 457 (1077)
+.++++|++++|++ ..+|+|+||+|++||+++|+||||||||||+++|+|+++|++ |+|.++|+++.+.+. .+
T Consensus 4 ~~l~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~~~--~~ 78 (362)
T TIGR03258 4 GGIRIDHLRVAYGA---NTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPP--HK 78 (362)
T ss_pred eEEEEEEEEEEECC---eEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCCCH--HH
Confidence 57999999999974 358999999999999999999999999999999999999999 999999999976654 35
Q ss_pred hheeEEccCCCcccc-cHHHHHhcCCCC--CCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHH
Q 001438 458 QQIGLVNQEPALFAT-TIRENILYGKDD--ATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRA 534 (1077)
Q Consensus 458 ~~i~~v~Q~~~lf~~-ti~~ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARa 534 (1077)
+.|+||+|++.+|+. |++|||.|+... ...++..+ +...+.+ .+ |++........+||||||||++||||
T Consensus 79 r~ig~vfQ~~~l~p~~tv~enl~~~l~~~~~~~~~~~~--~v~~~l~---~~--gL~~~~~~~~~~LSgGq~QRvaLARA 151 (362)
T TIGR03258 79 RGLALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAE--RVADALK---LV--GLGDAAAHLPAQLSGGMQQRIAIARA 151 (362)
T ss_pred CCEEEEECCcccCCCCcHHHHHHHHHHHcCCCHHHHHH--HHHHHHH---hc--CCCchhhCChhhCCHHHHHHHHHHHH
Confidence 679999999999976 999999987421 22222221 1111222 11 33444566778999999999999999
Q ss_pred hccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC---CCeEEEEccCchhHhh-cCEEEEEECCEEEEecChhHHhcCCC
Q 001438 535 IVKNPSILLLDEATSALDAESENSVQEALDRVMV---GRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELISNPN 610 (1077)
Q Consensus 535 l~~~p~illlDEpts~lD~~~~~~i~~~l~~~~~---~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~~ 610 (1077)
|+.+|++||||||||+||+.+++.+.+.|+++.+ |.|+|+|||+++.+.. ||+|++|++|++++.|+++|+..++.
T Consensus 152 L~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~ea~~l~dri~vl~~G~i~~~g~~~~~~~~p~ 231 (362)
T TIGR03258 152 IAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQDDALTLADKAGIMKDGRLAAHGEPQALYDAPA 231 (362)
T ss_pred HhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCcC
Confidence 9999999999999999999999999999988753 7899999999998755 99999999999999999999988765
Q ss_pred chH
Q 001438 611 SAY 613 (1077)
Q Consensus 611 ~~~ 613 (1077)
..|
T Consensus 232 ~~~ 234 (362)
T TIGR03258 232 DGF 234 (362)
T ss_pred cHH
Confidence 444
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. |
| >PRK11819 putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-41 Score=407.30 Aligned_cols=208 Identities=27% Similarity=0.380 Sum_probs=165.1
Q ss_pred cEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHHHhhhe
Q 001438 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQI 460 (1077)
Q Consensus 381 ~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i 460 (1077)
.|+++|++++|++ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+++. .+|
T Consensus 6 ~l~i~~l~~~y~~--~~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p~~G~i~~~~~-----------~~i 72 (556)
T PRK11819 6 IYTMNRVSKVVPP--KKQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFEGEARPAPG-----------IKV 72 (556)
T ss_pred EEEEeeEEEEeCC--CCeeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCC-----------CEE
Confidence 5899999999962 246999999999999999999999999999999999999999999999752 369
Q ss_pred eEEccCCCcccc-cHHHHHhcCCCCC----------------CH----------HHHHHHHHH-------HhHHHHHhcC
Q 001438 461 GLVNQEPALFAT-TIRENILYGKDDA----------------TM----------EEITRAAKL-------SEAMSFISNL 506 (1077)
Q Consensus 461 ~~v~Q~~~lf~~-ti~~ni~~~~~~~----------------~~----------~~~~~~~~~-------~~~~~~i~~l 506 (1077)
|||||+|.+++. |++||+.++.... .. .++.+.+.. ....+.++.+
T Consensus 73 ~~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 152 (556)
T PRK11819 73 GYLPQEPQLDPEKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDAL 152 (556)
T ss_pred EEEecCCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHhC
Confidence 999999999876 9999998753100 00 000000100 0111112221
Q ss_pred ccchhhhhcCCCCCCChHHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEccCchhHhh-c
Q 001438 507 PERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRN-A 585 (1077)
Q Consensus 507 ~~g~~t~~~~~g~~LSgGqkqri~lARal~~~p~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~vtH~~~~~~~-~ 585 (1077)
|++ .......+||||||||++||||++.+|++|||||||++||+.+...+.+.|++.. .|+|+|||+++.+.. |
T Consensus 153 --gl~-~~~~~~~~LSgGqkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~~L~~~~--~tviiisHd~~~~~~~~ 227 (556)
T PRK11819 153 --RCP-PWDAKVTKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHDYP--GTVVAVTHDRYFLDNVA 227 (556)
T ss_pred --CCC-cccCchhhcCHHHHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHHHHHhCC--CeEEEEeCCHHHHHhhc
Confidence 221 1345667899999999999999999999999999999999999999999998763 599999999999876 9
Q ss_pred CEEEEEECCEEE-EecChhHHh
Q 001438 586 DVIAVVQGRKIV-KTGSHEELI 606 (1077)
Q Consensus 586 d~i~~l~~G~i~-~~g~~~~l~ 606 (1077)
|+|++|++|+++ ..|+++++.
T Consensus 228 d~i~~l~~g~i~~~~g~~~~~~ 249 (556)
T PRK11819 228 GWILELDRGRGIPWEGNYSSWL 249 (556)
T ss_pred CeEEEEeCCEEEEecCCHHHHH
Confidence 999999999986 677777654
|
|
| >TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-41 Score=408.28 Aligned_cols=208 Identities=27% Similarity=0.389 Sum_probs=165.4
Q ss_pred cEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHHHhhhe
Q 001438 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQI 460 (1077)
Q Consensus 381 ~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i 460 (1077)
.++++|++++|++ ++++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+++. .+|
T Consensus 4 ~i~~~nls~~~~~--~~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p~~G~i~~~~~-----------~~i 70 (552)
T TIGR03719 4 IYTMNRVSKVVPP--KKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAPG-----------IKV 70 (552)
T ss_pred EEEEeeEEEecCC--CCeeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCC-----------CEE
Confidence 5899999999962 235899999999999999999999999999999999999999999999752 369
Q ss_pred eEEccCCCcccc-cHHHHHhcCCCC-----------------CCH---------HHHHHHHHHHh-------HHHHHhcC
Q 001438 461 GLVNQEPALFAT-TIRENILYGKDD-----------------ATM---------EEITRAAKLSE-------AMSFISNL 506 (1077)
Q Consensus 461 ~~v~Q~~~lf~~-ti~~ni~~~~~~-----------------~~~---------~~~~~~~~~~~-------~~~~i~~l 506 (1077)
||++|+|++++. |++||+.++... ... +++.++++..+ ..+.++.+
T Consensus 71 ~~v~Q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 150 (552)
T TIGR03719 71 GYLPQEPQLDPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDAL 150 (552)
T ss_pred EEEeccCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhhC
Confidence 999999999865 999999875311 000 11111111111 11112222
Q ss_pred ccchhhhhcCCCCCCChHHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEccCchhHhh-c
Q 001438 507 PERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRN-A 585 (1077)
Q Consensus 507 ~~g~~t~~~~~g~~LSgGqkqri~lARal~~~p~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~vtH~~~~~~~-~ 585 (1077)
|++ .......+||||||||++||||++.+|++|||||||++||+.+.+.+.+.|++. +.|+|+|||+++.+.. |
T Consensus 151 --~l~-~~~~~~~~LSgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~~--~~tvIiisHd~~~~~~~~ 225 (552)
T TIGR03719 151 --RCP-PWDADVTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQEY--PGTVVAVTHDRYFLDNVA 225 (552)
T ss_pred --CCC-cccCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHHHHhC--CCeEEEEeCCHHHHHhhc
Confidence 221 124566789999999999999999999999999999999999999999999876 3699999999999876 9
Q ss_pred CEEEEEECCEEE-EecChhHHh
Q 001438 586 DVIAVVQGRKIV-KTGSHEELI 606 (1077)
Q Consensus 586 d~i~~l~~G~i~-~~g~~~~l~ 606 (1077)
|+|++|++|+++ ..|++++..
T Consensus 226 d~v~~l~~g~i~~~~g~~~~~~ 247 (552)
T TIGR03719 226 GWILELDRGRGIPWEGNYSSWL 247 (552)
T ss_pred CeEEEEECCEEEEecCCHHHHH
Confidence 999999999976 667777664
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. |
| >PRK14273 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-42 Score=374.00 Aligned_cols=229 Identities=28% Similarity=0.484 Sum_probs=185.7
Q ss_pred ccEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCC-----CccEEEECCeeCCC--CC
Q 001438 380 GHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEP-----LSGEILLDGNNIKG--LD 452 (1077)
Q Consensus 380 ~~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~-----~~G~i~~~g~~~~~--~~ 452 (1077)
..++++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|+++.. .+
T Consensus 6 ~~l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~ 82 (254)
T PRK14273 6 AIIETENLNLFYTD---FKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFD 82 (254)
T ss_pred ceEEEeeeEEEeCC---ceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEeccccccc
Confidence 36999999999964 3589999999999999999999999999999999999997 48999999998853 33
Q ss_pred HHHHhhheeEEccCCCcccccHHHHHhcCCCC---CCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHH
Q 001438 453 LKWLRQQIGLVNQEPALFATTIRENILYGKDD---ATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRI 529 (1077)
Q Consensus 453 ~~~~r~~i~~v~Q~~~lf~~ti~~ni~~~~~~---~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri 529 (1077)
...+|+.++|++|++.+|+.|++|||.++... ...++..+.+ ....+.+ .+.+++......++.+||||||||+
T Consensus 83 ~~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~--~~~l~~~-~l~~~l~~~~~~~~~~LSgG~~qrv 159 (254)
T PRK14273 83 ILELRRKIGMVFQTPNPFLMSIYDNISYGPKIHGTKDKKKLDEIV--EQSLKKS-ALWNEVKDKLNTNALSLSGGQQQRL 159 (254)
T ss_pred HHHHhhceEEEeeccccccCcHHHHHHHHHHhcCCCCHHHHHHHH--HHHHHHh-CCchhhHHHHhCCcccCCHHHHHHH
Confidence 45678889999999999989999999876421 1111111111 1111111 1211112234456779999999999
Q ss_pred HHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEccCchhHhh-cCEEEEEECCEEEEecChhHHhcC
Q 001438 530 AISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELISN 608 (1077)
Q Consensus 530 ~lARal~~~p~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 608 (1077)
+||||++.+|++|||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+.. ||+|++|++|++++.|+++++.++
T Consensus 160 ~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 239 (254)
T PRK14273 160 CIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLKESYTIIIVTHNMQQAGRISDRTAFFLNGCIEEESSTDELFFN 239 (254)
T ss_pred HHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhC
Confidence 9999999999999999999999999999999999998778999999999999865 999999999999999999999876
Q ss_pred CCchHH
Q 001438 609 PNSAYA 614 (1077)
Q Consensus 609 ~~~~~~ 614 (1077)
+...|.
T Consensus 240 ~~~~~~ 245 (254)
T PRK14273 240 PKNTKT 245 (254)
T ss_pred CCChHH
Confidence 554443
|
|
| >cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-42 Score=372.97 Aligned_cols=217 Identities=29% Similarity=0.526 Sum_probs=183.1
Q ss_pred EEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHHH-hhhe
Q 001438 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWL-RQQI 460 (1077)
Q Consensus 382 i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~-r~~i 460 (1077)
++++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+ ++.+
T Consensus 1 l~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i 77 (236)
T cd03219 1 LEVRGLTKRFGG---LVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLGI 77 (236)
T ss_pred CeeeeeEEEECC---EEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECCCCCHHHHHhcCE
Confidence 468999999963 358999999999999999999999999999999999999999999999999988776554 5679
Q ss_pred eEEccCCCcccc-cHHHHHhcCCCCCC------------HHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHH
Q 001438 461 GLVNQEPALFAT-TIRENILYGKDDAT------------MEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQ 527 (1077)
Q Consensus 461 ~~v~Q~~~lf~~-ti~~ni~~~~~~~~------------~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkq 527 (1077)
+|+||++.+|++ |++||+.++..... .++.. .+ ..+.++.+ |++...+....+|||||||
T Consensus 78 ~~v~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~---~~~~l~~~--~l~~~~~~~~~~LSgG~~q 150 (236)
T cd03219 78 GRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREAR--ER---AEELLERV--GLADLADRPAGELSYGQQR 150 (236)
T ss_pred EEEecccccccCCCHHHHHHHHHhhccccccccccccccHHHHH--HH---HHHHHHHc--CccchhhCChhhCCHHHHH
Confidence 999999999987 99999987642111 11111 11 12223333 4445566777899999999
Q ss_pred HHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCeEEEEccCchhHhh-cCEEEEEECCEEEEecChhHH
Q 001438 528 RIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEEL 605 (1077)
Q Consensus 528 ri~lARal~~~p~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l 605 (1077)
|++||||++.+|+++||||||++||+.+++.+.+.|+++. +++|+|++||+++.+.. ||+|++|++|++++.|+++++
T Consensus 151 rv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 230 (236)
T cd03219 151 RLEIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMDVVMSLADRVTVLDQGRVIAEGTPDEV 230 (236)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEeCCEEEeecCHHHh
Confidence 9999999999999999999999999999999999998875 68999999999999865 999999999999999999988
Q ss_pred hcC
Q 001438 606 ISN 608 (1077)
Q Consensus 606 ~~~ 608 (1077)
..+
T Consensus 231 ~~~ 233 (236)
T cd03219 231 RNN 233 (236)
T ss_pred ccC
Confidence 653
|
MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). |
| >cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1) | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-42 Score=361.59 Aligned_cols=204 Identities=33% Similarity=0.541 Sum_probs=179.9
Q ss_pred cccEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHHHhh
Q 001438 379 SGHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQ 458 (1077)
Q Consensus 379 ~~~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~ 458 (1077)
.+.++++|++++|+.. ..++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++.+.+...+|+
T Consensus 4 ~~~l~~~~l~~~~~~~-~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~ 82 (207)
T cd03369 4 HGEIEVENLSVRYAPD-LPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDLRS 82 (207)
T ss_pred CCeEEEEEEEEEeCCC-CcccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhHHCCHHHHHh
Confidence 4679999999999743 236899999999999999999999999999999999999999999999999998888888888
Q ss_pred heeEEccCCCcccccHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHHhccC
Q 001438 459 QIGLVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKN 538 (1077)
Q Consensus 459 ~i~~v~Q~~~lf~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~~~ 538 (1077)
.|+|++|+|.+|++|++||+.+... ...+++.++++ +++++.+|||||+||++||||++.+
T Consensus 83 ~i~~v~q~~~~~~~tv~~~l~~~~~-~~~~~~~~~l~------------------~~~~~~~LS~G~~qrv~laral~~~ 143 (207)
T cd03369 83 SLTIIPQDPTLFSGTIRSNLDPFDE-YSDEEIYGALR------------------VSEGGLNLSQGQRQLLCLARALLKR 143 (207)
T ss_pred hEEEEecCCcccCccHHHHhcccCC-CCHHHHHHHhh------------------ccCCCCcCCHHHHHHHHHHHHHhhC
Confidence 9999999999999999999976432 23333222211 3456789999999999999999999
Q ss_pred CCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEccCchhHhhcCEEEEEECCEEEEecCh
Q 001438 539 PSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRNADVIAVVQGRKIVKTGSH 602 (1077)
Q Consensus 539 p~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~vtH~~~~~~~~d~i~~l~~G~i~~~g~~ 602 (1077)
|+++||||||++||+.+.+.+.+.|++..+++|+|++||+++.+..||++++|++|++++.|++
T Consensus 144 p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~th~~~~~~~~d~v~~l~~g~i~~~g~~ 207 (207)
T cd03369 144 PRVLVLDEATASIDYATDALIQKTIREEFTNSTILTIAHRLRTIIDYDKILVMDAGEVKEYDHP 207 (207)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCEEEecCCC
Confidence 9999999999999999999999999988778999999999999888999999999999988763
|
NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. |
| >COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-38 Score=366.42 Aligned_cols=470 Identities=17% Similarity=0.137 Sum_probs=333.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhccCCChhH------HHHHHHhHHHHHHHHH
Q 001438 103 YSLDFVYLSVAILFSSWIEVSCWMYTGERQAAKMRMAYLRSMLNQDISLFDTEASTGE------VISAITSDIIVVQDAL 176 (1077)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~f~~~~~~G~------i~~r~~~D~~~i~~~~ 176 (1077)
....+.+++.+...+...+.++-.....++-.-+-..+.++.+...-.++.. ..|. .=.|+..|+..+-+..
T Consensus 88 ~l~~f~~ia~~~v~~~v~~~~L~~~l~~~wR~wLt~~l~~~wl~~~~~y~l~--~~~~~~~~dNpDQRi~eDi~~~t~~t 165 (604)
T COG4178 88 QLQVFAIIAGLLVLLNVAQTWLNQMLRLRWREWLTKDLLDRWLDPRRYYRLA--QAGGIGLIDNPDQRIQEDIRNFTETT 165 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHH--hcccccCCCChHHhHHHHHHHHHhhH
Confidence 3444555555555555556665555555555555566677777666333332 3332 3369999999988877
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001438 177 SEKVGNFMHYISRFLGGFIIGFAR---------------VWQISLVTLSIVPLIALAGGMYAYVTIGLIARVRKSYVKAG 241 (1077)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~l~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (1077)
.+....++.++.+++.-.+++... ...+..++++.+++-.++..++++.+.+..-..++..+...
T Consensus 166 ~~l~~g~l~s~islisF~~iLw~lsg~~~~~~~g~~~~I~g~mv~~~i~Ya~~~s~~~~~iGr~Li~LN~~~~~~EA~fR 245 (604)
T COG4178 166 LDLSFGLLQSVISLISFTGILWSLSGGLAFTIGGFSFGIPGYMVWAVIIYAISASLLTHLIGRPLIRLNFERQKLEADFR 245 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccCcceEeecccccccchHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHH
Confidence 766666666665544333332211 11122223333344444445566666666666666666666
Q ss_pred HHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHH
Q 001438 242 EIAEEVIGNVRTVQAFAGEDKAVKVYKEALSNTYKYGRKAGLAKGLGLGSMHCVLFLSWSLLVWYVSVVVHKHISNGGES 321 (1077)
Q Consensus 242 ~~~~E~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~g~~ 321 (1077)
..+.-.-++...|-.|+.|+.+.++.++......+...+......-...+......++.++-+..++.....|.++.|.+
T Consensus 246 ~~Lvrv~enaE~IAly~GE~~Er~~l~~~f~~v~~n~~~l~~~~~~l~~~~~gy~~~s~v~P~li~ap~~f~g~i~~G~l 325 (604)
T COG4178 246 YSLVRVRENAEAIALYRGEKVERRRLDDRFDAVLGNWRRLVRAQIRLTWFQLGYGWLSVVLPILIAAPRYFSGQITFGGL 325 (604)
T ss_pred HHHHHHHhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhHHHHHHHHHhccHhhhcCcChHHHH
Confidence 66667778899999999999988877776665555444333322222222222223333333344455566889999998
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhccCc---cccccccc-CCCC---CCCcccEEEEeEEEEcCCC
Q 001438 322 FTTMLNVVIAGLSLGQAAPDITAFIRAKAAAYPIFEMIERDT---MSKASSKT-GRKL---DKLSGHIEFKDVSFCYPSR 394 (1077)
Q Consensus 322 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~~~---~~~~~~~~-~~~~---~~~~~~i~~~~v~~~y~~~ 394 (1077)
......+......++.+...++.++.-++...|+.++.+.-+ ..+..... +... ...+..|+++|++..-|+.
T Consensus 326 mqa~~aF~~v~sslswfi~~~~~ia~~rA~~~Rl~~f~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nl~l~~p~~ 405 (604)
T COG4178 326 MQAVGAFGQVHSSLSWFIDNYDAIADWRATLLRLAEFRQALEAAQMDTEKPARTGRRIDFDDNADHGITLENLSLRTPDG 405 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhccCcccccCcccccccccccccceeEEeeeeEECCCC
Confidence 888777777778889999999999999999999998864321 11100000 0000 1114679999999998864
Q ss_pred CCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHHHhhheeEEccCCCcccccH
Q 001438 395 PDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIGLVNQEPALFATTI 474 (1077)
Q Consensus 395 ~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti 474 (1077)
...+++.||++++||.+-|.||||||||||+++|+|+.|--+|+|..-.. ..+-|+||.|++-.||+
T Consensus 406 --~~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~P~~-----------~~~lflpQ~PY~p~GtL 472 (604)
T COG4178 406 --QTLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWGSGRISMPAD-----------SALLFLPQRPYLPQGTL 472 (604)
T ss_pred --CeeeccceeeeCCCCEEEEECCCCCCHHHHHHHHhccCccCCCceecCCC-----------CceEEecCCCCCCCccH
Confidence 36899999999999999999999999999999999999999999977521 24899999999999999
Q ss_pred HHHHhcCCCC--CCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHHhccCCCEEEEeCcCCCCC
Q 001438 475 RENILYGKDD--ATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALD 552 (1077)
Q Consensus 475 ~~ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~~~p~illlDEpts~lD 552 (1077)
||-|+|+... .+++++.+++..+++.++++++.+-.+ -...||+|||||+++||.++++|++++|||+|||||
T Consensus 473 re~l~YP~~~~~~~d~~l~~vL~~vgL~~L~~rl~~~~~-----W~~vLS~GEqQRlafARilL~kP~~v~LDEATsALD 547 (604)
T COG4178 473 REALCYPNAAPDFSDAELVAVLHKVGLGDLAERLDEEDR-----WDRVLSGGEQQRLAFARLLLHKPKWVFLDEATSALD 547 (604)
T ss_pred HHHHhCCCCCCCCChHHHHHHHHHcCcHHHHHHHhccCc-----HhhhcChhHHHHHHHHHHHHcCCCEEEEecchhccC
Confidence 9999998743 789999999999999888887654322 345799999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhCCCeEEEEccCchhHhhcCEEEEEE
Q 001438 553 AESENSVQEALDRVMVGRTTVVVAHRLSTIRNADVIAVVQ 592 (1077)
Q Consensus 553 ~~~~~~i~~~l~~~~~~~t~i~vtH~~~~~~~~d~i~~l~ 592 (1077)
++++..+.+.+++...+.|+|-|.||.......++.+-+.
T Consensus 548 e~~e~~l~q~l~~~lp~~tvISV~Hr~tl~~~h~~~l~l~ 587 (604)
T COG4178 548 EETEDRLYQLLKEELPDATVISVGHRPTLWNFHSRQLELL 587 (604)
T ss_pred hHHHHHHHHHHHhhCCCCEEEEeccchhhHHHHhhheeec
Confidence 9999999999999889999999999998887766655443
|
|
| >PRK10851 sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-42 Score=386.41 Aligned_cols=222 Identities=31% Similarity=0.523 Sum_probs=185.3
Q ss_pred cEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHHHhhhe
Q 001438 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQI 460 (1077)
Q Consensus 381 ~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i 460 (1077)
.|+++|++++|++ ..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|++||+++.+.+. .++++
T Consensus 2 ~L~i~~l~~~~~~---~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~--~~r~i 76 (353)
T PRK10851 2 SIEIANIKKSFGR---TQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHA--RDRKV 76 (353)
T ss_pred EEEEEEEEEEeCC---eEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCH--HHCCE
Confidence 3789999999964 358999999999999999999999999999999999999999999999999976553 35689
Q ss_pred eEEccCCCcccc-cHHHHHhcCCCC------CCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHH
Q 001438 461 GLVNQEPALFAT-TIRENILYGKDD------ATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISR 533 (1077)
Q Consensus 461 ~~v~Q~~~lf~~-ti~~ni~~~~~~------~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lAR 533 (1077)
+||+|++.+|+. |++||+.++... .+.++..+ +..++.+.+ |+.........+||||||||++|||
T Consensus 77 ~~v~Q~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~-----~L~~~~~~~~~~LSgGq~QRvalAr 149 (353)
T PRK10851 77 GFVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKA--KVTQLLEMV-----QLAHLADRYPAQLSGGQKQRVALAR 149 (353)
T ss_pred EEEecCcccCCCCcHHHHHHhhhhhcccccCCCHHHHHH--HHHHHHHHc-----CCchhhhCChhhCCHHHHHHHHHHH
Confidence 999999999975 999999987531 12222111 112222222 2333345667799999999999999
Q ss_pred HhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCeEEEEccCchhHhh-cCEEEEEECCEEEEecChhHHhcCCC
Q 001438 534 AIVKNPSILLLDEATSALDAESENSVQEALDRVMV--GRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELISNPN 610 (1077)
Q Consensus 534 al~~~p~illlDEpts~lD~~~~~~i~~~l~~~~~--~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~~ 610 (1077)
||+.+|++|||||||++||+.+++.+.+.|+++.+ ++|+|+|||+++.+.. ||+|++|++|++++.|+++++..++.
T Consensus 150 AL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~ea~~~~Dri~vl~~G~i~~~g~~~~i~~~p~ 229 (353)
T PRK10851 150 ALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQEEAMEVADRVVVMSQGNIEQAGTPDQVWREPA 229 (353)
T ss_pred HHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCcc
Confidence 99999999999999999999999999999988753 7899999999998765 99999999999999999999988765
Q ss_pred chHH
Q 001438 611 SAYA 614 (1077)
Q Consensus 611 ~~~~ 614 (1077)
..|.
T Consensus 230 ~~~~ 233 (353)
T PRK10851 230 TRFV 233 (353)
T ss_pred chHH
Confidence 5443
|
|
| >TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-42 Score=371.66 Aligned_cols=225 Identities=32% Similarity=0.554 Sum_probs=184.5
Q ss_pred EEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCC-----ccEEEECCeeCCCC--CHH
Q 001438 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPL-----SGEILLDGNNIKGL--DLK 454 (1077)
Q Consensus 382 i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~-----~G~i~~~g~~~~~~--~~~ 454 (1077)
++++|++++|++ ..+++|+||+|++||+++|+||||||||||+++|+|+++|+ +|+|.++|+++... +..
T Consensus 2 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~ 78 (247)
T TIGR00972 2 IEIENLNLFYGE---KEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVV 78 (247)
T ss_pred EEEEEEEEEECC---eeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccchH
Confidence 789999999974 35899999999999999999999999999999999999998 99999999998753 355
Q ss_pred HHhhheeEEccCCCcccccHHHHHhcCCCC---CCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHH
Q 001438 455 WLRQQIGLVNQEPALFATTIRENILYGKDD---ATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAI 531 (1077)
Q Consensus 455 ~~r~~i~~v~Q~~~lf~~ti~~ni~~~~~~---~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~l 531 (1077)
..|++++|+||++.+|+.|++||+.++... ...++..+.+ ..+.+.+ .+.+...........+||||||||++|
T Consensus 79 ~~~~~i~~v~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~--~~~l~~~-~l~~~~~~~~~~~~~~LSgG~~qrv~l 155 (247)
T TIGR00972 79 ELRRRVGMVFQKPNPFPMSIYDNIAYGPRLHGIKDKKELDEIV--EESLKKA-ALWDEVKDRLHDSALGLSGGQQQRLCI 155 (247)
T ss_pred HHHhheEEEecCcccCCCCHHHHHHhHHHhcCCCCHHHHHHHH--HHHHHHc-CCCcchhhHhhCCcccCCHHHHHHHHH
Confidence 677889999999999999999999875321 1122211111 1111211 122111134566778999999999999
Q ss_pred HHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEccCchhHhh-cCEEEEEECCEEEEecChhHHhcCCC
Q 001438 532 SRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELISNPN 610 (1077)
Q Consensus 532 ARal~~~p~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~~ 610 (1077)
|||++.+|+++||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+.. ||+|++|++|++++.|+++++..++.
T Consensus 156 aral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~ 235 (247)
T TIGR00972 156 ARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKKKYTIVIVTHNMQQAARISDRTAFFYDGELVEYGPTEQIFTNPK 235 (247)
T ss_pred HHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCeEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhCCC
Confidence 99999999999999999999999999999999988767899999999998865 99999999999999999999876544
Q ss_pred ch
Q 001438 611 SA 612 (1077)
Q Consensus 611 ~~ 612 (1077)
..
T Consensus 236 ~~ 237 (247)
T TIGR00972 236 EK 237 (247)
T ss_pred Ch
Confidence 33
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters. |
| >cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-42 Score=370.03 Aligned_cols=216 Identities=35% Similarity=0.546 Sum_probs=179.8
Q ss_pred EEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHHHhhhee
Q 001438 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIG 461 (1077)
Q Consensus 382 i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 461 (1077)
++++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+. .+++++
T Consensus 3 l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~--~~~~i~ 77 (239)
T cd03296 3 IEVRNVSKRFGD---FVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPV--QERNVG 77 (239)
T ss_pred EEEEeEEEEECC---EEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCc--cccceE
Confidence 789999999974 359999999999999999999999999999999999999999999999999876543 256799
Q ss_pred EEccCCCccc-ccHHHHHhcCCCCC------CHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHH
Q 001438 462 LVNQEPALFA-TTIRENILYGKDDA------TMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRA 534 (1077)
Q Consensus 462 ~v~Q~~~lf~-~ti~~ni~~~~~~~------~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARa 534 (1077)
|++|+|.+|+ .|++||+.++.... ..++..+ +...+ ++.+ |++........+||||||||++||||
T Consensus 78 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~--~~~~~---l~~~--~l~~~~~~~~~~LS~G~~qrl~la~a 150 (239)
T cd03296 78 FVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRA--KVHEL---LKLV--QLDWLADRYPAQLSGGQRQRVALARA 150 (239)
T ss_pred EEecCCcccCCCCHHHHHhhhhhhccccccCCHHHHHH--HHHHH---HHHc--CChhhhhcChhhCCHHHHHHHHHHHH
Confidence 9999999986 49999998764211 1111111 11112 2222 33444556677999999999999999
Q ss_pred hccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCeEEEEccCchhHhh-cCEEEEEECCEEEEecChhHHhcCC
Q 001438 535 IVKNPSILLLDEATSALDAESENSVQEALDRVMV--GRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELISNP 609 (1077)
Q Consensus 535 l~~~p~illlDEpts~lD~~~~~~i~~~l~~~~~--~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~ 609 (1077)
++.+|+++||||||++||+++++.+.+.|+++.+ ++|+|++||+++.+.. ||+|++|++|++++.|+++++.+.+
T Consensus 151 l~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~ 228 (239)
T cd03296 151 LAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQEEALEVADRVVVMNKGRIEQVGTPDEVYDHP 228 (239)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHHHhcCC
Confidence 9999999999999999999999999999988743 7899999999998765 9999999999999999999987653
|
Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-39 Score=404.72 Aligned_cols=387 Identities=19% Similarity=0.226 Sum_probs=326.1
Q ss_pred HHHHHhhcccchHHHHHHHHHHHHHhhHHhHHHHHHHHHHHhhccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001438 684 AIKLYSMVRPDWTYGVCGTICAIIAGAQMPLFALGVSQALVAYYMDWDTTQREVKKITILFCCAAVITVIVHAIEHLSFG 763 (1077)
Q Consensus 684 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 763 (1077)
..+++.+.+++++++....+++++..+...+.++.+..+++....... ......+...++++.++..++.+++.++..
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~p~~~~~iiD~v~~~~~--~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (708)
T TIGR01193 144 LLKFIPLITRQKKLIVNIVIAAIIVTLISIAGSYYLQKIIDTYIPHKM--MGTLGIISIGLIIAYIIQQILSYIQIFLLN 221 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566667777777666666666666677778888888876654211 112222334445555667788889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCccccccccCCchhHHHHHhhcHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 001438 764 IMGERLTLRVREKMFSAILSNEIGWFDEMDNSSSILASRLESDATLLRTIVVDRSTILIQNFGLVTASFVIAFILNWRIT 843 (1077)
Q Consensus 764 ~~~~~~~~~Lr~~l~~~llr~p~~FFD~~~~~~G~IlnR~s~D~~~i~~~l~~~l~~~~~~~~~~~~~i~i~~~~~w~l~ 843 (1077)
..+.+...++|.++|+++++.|++||+. +++|++++|++ |.+.+.+.+......++..+..+++.++++++++|+++
T Consensus 222 ~~~~~~~~~l~~~~~~~ll~l~~~~f~~--~~~G~~~~r~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~ 298 (708)
T TIGR01193 222 VLGQRLSIDIILSYIKHLFELPMSFFST--RRTGEIVSRFT-DASSIIDALASTILSLFLDMWILVIVGLFLVRQNMLLF 298 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHhCC--CchhHHHHHhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 9999999999999999999999999995 99999999998 99999998888887777887888888888999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhHHHHHHHcchHHHHHhcchHHHHHHHHHHhhhhhHHHHHHHHHH
Q 001438 844 LVVVATYPLIISGHISEKLFFQGYGGNLSKAYLKANMLAAEAVSNIRTVAAFCSEDKVLELYSRELVEPSKRSFIRGQIA 923 (1077)
Q Consensus 844 l~~l~~~Pl~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Etl~Gi~tIrAf~~e~~~~~~f~~~~~~~~~~~~~~~~~~ 923 (1077)
+++++++|+.++...+..+..++..++..+...+..+.+.|+++|++|||+|+.|+++.+++.+...+..+...+.....
T Consensus 299 li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (708)
T TIGR01193 299 LLSLLSIPVYAVIIILFKRTFNKLNHDAMQANAVLNSSIIEDLNGIETIKSLTSEAERYSKIDSEFGDYLNKSFKYQKAD 378 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999988888888888888888888888889999999999999999999999999999999988888888877777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHcCCCCc
Q 001438 924 GIFYGISQFFIFSSYGLALWYGSVLMGKELASFKSVMKSFMVLIVTALAMGETLALVPDLLKGNQMAASVFEVLDRKTQV 1003 (1077)
Q Consensus 924 ~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~l~~~~~~ 1003 (1077)
+....+...+......+++|+|+.++..|.+++|.++++.++......|+..+......++.+..+.+|+.++++.+++.
T Consensus 379 ~~~~~~~~~~~~~~~i~il~~g~~lv~~g~ls~G~lva~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~ 458 (708)
T TIGR01193 379 QGQQAIKAVTKLILNVVILWTGAYLVMRGKLTLGQLITFNALLSYFLTPLENIINLQPKLQAARVANNRLNEVYLVDSEF 458 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcc
Confidence 77777777777777888999999999999999999999999999899999999999999999999999999999877654
Q ss_pred cCCCC-cccccccccEEEeeeeeeCCCCCcccccccceeeeeCCCEEEEECCCCCCHHHHHHHHhhccCCCCCCC
Q 001438 1004 IGDIG-EELTNVEGTIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKA 1077 (1077)
Q Consensus 1004 ~~~~~-~~~~~~~G~I~f~nVsf~Y~~~~~~~VLk~vsl~I~~GekVaIVGrTGsGKSTLi~lL~Rfyd~~~G~i 1077 (1077)
+.... ...++..|+|+|+||+|+|+++ .+||+|+||+|+|||+||||||||||||||+++|.|+|+|++|+|
T Consensus 459 ~~~~~~~~~~~~~~~I~~~~vsf~y~~~--~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~~G~I 531 (708)
T TIGR01193 459 INKKKRTELNNLNGDIVINDVSYSYGYG--SNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEI 531 (708)
T ss_pred cccccccCCCCCCCcEEEEEEEEEcCCC--CcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCCcEE
Confidence 32211 1223457899999999999743 358999999999999999999999999999999999999999986
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc. |
| >PRK14250 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-41 Score=368.65 Aligned_cols=224 Identities=33% Similarity=0.548 Sum_probs=186.9
Q ss_pred cEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHHHhhhe
Q 001438 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQI 460 (1077)
Q Consensus 381 ~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i 460 (1077)
.++++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+|+.+
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i 79 (241)
T PRK14250 3 EIEFKEVSYSSFG---KEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLRRKI 79 (241)
T ss_pred eEEEEeEEEEeCC---eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcChHHhhhcE
Confidence 4889999999964 3589999999999999999999999999999999999999999999999999877777788899
Q ss_pred eEEccCCCcccccHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHHhccCCC
Q 001438 461 GLVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPS 540 (1077)
Q Consensus 461 ~~v~Q~~~lf~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~~~p~ 540 (1077)
+|++|++.+|+.|++||+.++......+ ..++ ....+.+ .+++ ........+||||||||++||||++.+|+
T Consensus 80 ~~~~q~~~~~~~tv~e~l~~~~~~~~~~-~~~~---~~~l~~~-~l~~---~~~~~~~~~LS~G~~qrl~la~al~~~p~ 151 (241)
T PRK14250 80 GMVFQQPHLFEGTVKDNIEYGPMLKGEK-NVDV---EYYLSIV-GLNK---EYATRDVKNLSGGEAQRVSIARTLANNPE 151 (241)
T ss_pred EEEecCchhchhhHHHHHhcchhhcCcH-HHHH---HHHHHHc-CCCH---HHhhCCcccCCHHHHHHHHHHHHHhcCCC
Confidence 9999999999999999998764211111 1111 1111111 2221 23345677999999999999999999999
Q ss_pred EEEEeCcCCCCCHHHHHHHHHHHHHHh--CCCeEEEEccCchhHhh-cCEEEEEECCEEEEecChhHHhcCCCchHHH
Q 001438 541 ILLLDEATSALDAESENSVQEALDRVM--VGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELISNPNSAYAA 615 (1077)
Q Consensus 541 illlDEpts~lD~~~~~~i~~~l~~~~--~~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~ 615 (1077)
++||||||++||+.+.+.+.+.|+++. .|+|+|++||+++.+.. ||+|++|++|++++.|+++++...+...|..
T Consensus 152 llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~~~~~~ 229 (241)
T PRK14250 152 VLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHNMEQAKRIGDYTAFLNKGILVEYAKTYDFFTNPQNEVTK 229 (241)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHHhCCEEEEEeCCEEEEeCCHHHHhcCCCcHHHH
Confidence 999999999999999999999998874 38999999999999865 9999999999999999999998654444444
|
|
| >PRK10744 pstB phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-41 Score=372.52 Aligned_cols=229 Identities=31% Similarity=0.549 Sum_probs=188.6
Q ss_pred cccEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccC-----CCccEEEECCeeCCC--C
Q 001438 379 SGHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYE-----PLSGEILLDGNNIKG--L 451 (1077)
Q Consensus 379 ~~~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~-----~~~G~i~~~g~~~~~--~ 451 (1077)
.+.++++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|+++.. .
T Consensus 11 ~~~l~~~~l~~~~~~---~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~ 87 (260)
T PRK10744 11 PSKIQVRNLNFYYGK---FHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQ 87 (260)
T ss_pred CceEEEEEEEEEeCC---eEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEcccccc
Confidence 356999999999964 358999999999999999999999999999999999986 589999999999853 3
Q ss_pred CHHHHhhheeEEccCCCcccccHHHHHhcCCC---CCCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHH
Q 001438 452 DLKWLRQQIGLVNQEPALFATTIRENILYGKD---DATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQR 528 (1077)
Q Consensus 452 ~~~~~r~~i~~v~Q~~~lf~~ti~~ni~~~~~---~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqr 528 (1077)
+...+|++++|++|++.+|+.|++||+.++.. ..+.++..+ +..++.+.+ .+.+++.+..++...+||||||||
T Consensus 88 ~~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~--~~~~~l~~~-~l~~~~~~~~~~~~~~LS~Gq~qr 164 (260)
T PRK10744 88 DIALLRAKVGMVFQKPTPFPMSIYDNIAFGVRLFEKLSRAEMDE--RVEWALTKA-ALWNEVKDKLHQSGYSLSGGQQQR 164 (260)
T ss_pred chHHHhcceEEEecCCccCcCcHHHHHhhhHhhcCCCCHHHHHH--HHHHHHHHc-CCChhhHHHHhcCCCCCCHHHHHH
Confidence 45677889999999999999999999987632 122222111 111222222 222233445677788999999999
Q ss_pred HHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEccCchhHhh-cCEEEEEECCEEEEecChhHHhc
Q 001438 529 IAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELIS 607 (1077)
Q Consensus 529 i~lARal~~~p~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~ 607 (1077)
++||||++.+|+++||||||++||+.+++.+.+.|+++.+++|+|++||+++.+.. ||++++|++|++++.|+++++..
T Consensus 165 v~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 244 (260)
T PRK10744 165 LCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELKQDYTVVIVTHNMQQAARCSDYTAFMYLGELIEFGNTDTIFT 244 (260)
T ss_pred HHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 99999999999999999999999999999999999988778899999999999865 99999999999999999999876
Q ss_pred CCCchH
Q 001438 608 NPNSAY 613 (1077)
Q Consensus 608 ~~~~~~ 613 (1077)
.+...|
T Consensus 245 ~~~~~~ 250 (260)
T PRK10744 245 KPAKKQ 250 (260)
T ss_pred CCCcHH
Confidence 544433
|
|
| >PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-42 Score=378.76 Aligned_cols=220 Identities=31% Similarity=0.538 Sum_probs=184.3
Q ss_pred EEEEeEEEEcCCCC--CcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCC----CHHH
Q 001438 382 IEFKDVSFCYPSRP--DVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGL----DLKW 455 (1077)
Q Consensus 382 i~~~~v~~~y~~~~--~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~----~~~~ 455 (1077)
++++|++++|++.. ..++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||+++... +...
T Consensus 3 l~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (286)
T PRK13646 3 IRFDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIRP 82 (286)
T ss_pred EEEEEEEEEECCCCccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHH
Confidence 78999999996432 13699999999999999999999999999999999999999999999999998653 3456
Q ss_pred HhhheeEEccCC--CcccccHHHHHhcCCCC--CCHHHHHHHHHHHhHHHHHhcCccchhh-hhcCCCCCCChHHHHHHH
Q 001438 456 LRQQIGLVNQEP--ALFATTIRENILYGKDD--ATMEEITRAAKLSEAMSFISNLPERFET-QVGERGIQLSGGQKQRIA 530 (1077)
Q Consensus 456 ~r~~i~~v~Q~~--~lf~~ti~~ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~t-~~~~~g~~LSgGqkqri~ 530 (1077)
+|++||||||+| .+|+.|++|||.++... .+.++..+. ..+.++.+ |+++ .....+.+||||||||++
T Consensus 83 ~~~~ig~v~q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~-----~~~~l~~~--gL~~~~~~~~~~~LSgGq~qrv~ 155 (286)
T PRK13646 83 VRKRIGMVFQFPESQLFEDTVEREIIFGPKNFKMNLDEVKNY-----AHRLLMDL--GFSRDVMSQSPFQMSGGQMRKIA 155 (286)
T ss_pred HHhheEEEecChHhccchhhHHHHHHhhHHHcCCCHHHHHHH-----HHHHHHHc--CCChhhhhCCcccCCHHHHHHHH
Confidence 788999999998 58888999999986421 222222221 11223222 4543 345678899999999999
Q ss_pred HHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh--CCCeEEEEccCchhHh-hcCEEEEEECCEEEEecChhHHhc
Q 001438 531 ISRAIVKNPSILLLDEATSALDAESENSVQEALDRVM--VGRTTVVVAHRLSTIR-NADVIAVVQGRKIVKTGSHEELIS 607 (1077)
Q Consensus 531 lARal~~~p~illlDEpts~lD~~~~~~i~~~l~~~~--~~~t~i~vtH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~ 607 (1077)
|||||+.+|+++||||||++||+.+.+.+.+.|+++. .|+|+|+|||+++.+. .||+|++|++|++++.|+++++.+
T Consensus 156 laraL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~~ 235 (286)
T PRK13646 156 IVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMNEVARYADEVIVMKEGSIVSQTSPKELFK 235 (286)
T ss_pred HHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 9999999999999999999999999999999999874 4899999999999875 599999999999999999999876
Q ss_pred C
Q 001438 608 N 608 (1077)
Q Consensus 608 ~ 608 (1077)
+
T Consensus 236 ~ 236 (286)
T PRK13646 236 D 236 (286)
T ss_pred C
Confidence 4
|
|
| >cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-42 Score=366.46 Aligned_cols=217 Identities=30% Similarity=0.482 Sum_probs=180.6
Q ss_pred EEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHHH-hhhe
Q 001438 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWL-RQQI 460 (1077)
Q Consensus 382 i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~-r~~i 460 (1077)
|+++|++++|++ .++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+.... |+++
T Consensus 1 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i 77 (222)
T cd03224 1 LEVENLNAGYGK---SQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARAGI 77 (222)
T ss_pred CEEeeEEeecCC---eeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCCCCHHHHHhcCe
Confidence 478999999964 358999999999999999999999999999999999999999999999999987776554 5679
Q ss_pred eEEccCCCcccc-cHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHHhccCC
Q 001438 461 GLVNQEPALFAT-TIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNP 539 (1077)
Q Consensus 461 ~~v~Q~~~lf~~-ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~~~p 539 (1077)
+|+||++.+|+. |++||+.++.......+.. .+.....+.+..+ +........+||||||||++||||++.+|
T Consensus 78 ~~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~--~~~~~~l~~~~~l----~~~~~~~~~~LS~G~~qrv~laral~~~p 151 (222)
T cd03224 78 GYVPEGRRIFPELTVEENLLLGAYARRRAKRK--ARLERVYELFPRL----KERRKQLAGTLSGGEQQMLAIARALMSRP 151 (222)
T ss_pred EEeccccccCCCCcHHHHHHHHhhhcCchhHH--HHHHHHHHHHHhh----hhhhhCchhhCCHHHHHHHHHHHHHhcCC
Confidence 999999999987 9999998764322111111 1111222222222 33345567789999999999999999999
Q ss_pred CEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCeEEEEccCchhHhh-cCEEEEEECCEEEEecChhHHhc
Q 001438 540 SILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELIS 607 (1077)
Q Consensus 540 ~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~ 607 (1077)
+++||||||++||+.+++.+.+.|+++. +++|+|++||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 152 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 221 (222)
T cd03224 152 KLLLLDEPSEGLAPKIVEEIFEAIRELRDEGVTILLVEQNARFALEIADRAYVLERGRVVLEGTAAELLA 221 (222)
T ss_pred CEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhccEEEEeeCCeEEEeCCHHHHhc
Confidence 9999999999999999999999998875 57999999999998765 99999999999999999888753
|
The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. |
| >PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-42 Score=378.87 Aligned_cols=221 Identities=30% Similarity=0.540 Sum_probs=182.2
Q ss_pred EEEEeEEEEcCCCC--CcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCC----CCHHH
Q 001438 382 IEFKDVSFCYPSRP--DVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKG----LDLKW 455 (1077)
Q Consensus 382 i~~~~v~~~y~~~~--~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~----~~~~~ 455 (1077)
++++|++++|++.. ..++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++.. .....
T Consensus 3 l~~~~l~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (290)
T PRK13634 3 ITFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLKP 82 (290)
T ss_pred EEEEEEEEEECCCCcccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHH
Confidence 78999999997421 1359999999999999999999999999999999999999999999999999864 34556
Q ss_pred HhhheeEEccCC--CcccccHHHHHhcCCCC--CCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHH
Q 001438 456 LRQQIGLVNQEP--ALFATTIRENILYGKDD--ATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAI 531 (1077)
Q Consensus 456 ~r~~i~~v~Q~~--~lf~~ti~~ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~l 531 (1077)
.|++||||+|+| .+|+.|++|||.++... .+.++..+. .....+.+ .++. .....++.+||||||||++|
T Consensus 83 ~~~~ig~v~q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~--~~~~l~~~-gL~~---~~~~~~~~~LSgGq~qrv~l 156 (290)
T PRK13634 83 LRKKVGIVFQFPEHQLFEETVEKDICFGPMNFGVSEEDAKQK--AREMIELV-GLPE---ELLARSPFELSGGQMRRVAI 156 (290)
T ss_pred HHhhEEEEeeCchhhhhhhhHHHHHHHHHHHcCCCHHHHHHH--HHHHHHHC-CCCh---hhhhCCcccCCHHHHHHHHH
Confidence 778899999998 67888999999887421 223322211 11222222 2221 22355677999999999999
Q ss_pred HHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh--CCCeEEEEccCchhHh-hcCEEEEEECCEEEEecChhHHhcC
Q 001438 532 SRAIVKNPSILLLDEATSALDAESENSVQEALDRVM--VGRTTVVVAHRLSTIR-NADVIAVVQGRKIVKTGSHEELISN 608 (1077)
Q Consensus 532 ARal~~~p~illlDEpts~lD~~~~~~i~~~l~~~~--~~~t~i~vtH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~~ 608 (1077)
||||+.+|++|||||||++||+.+.+.+.+.|+++. .|.|+|++||+++.+. .||||++|++|++++.|+++++.+.
T Consensus 157 AraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~ 236 (290)
T PRK13634 157 AGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSMEDAARYADQIVVMHKGTVFLQGTPREIFAD 236 (290)
T ss_pred HHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHhcC
Confidence 999999999999999999999999999999998874 3899999999999986 4999999999999999999998754
|
|
| >PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-41 Score=375.34 Aligned_cols=216 Identities=30% Similarity=0.552 Sum_probs=181.1
Q ss_pred cEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHHHhhhe
Q 001438 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQI 460 (1077)
Q Consensus 381 ~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i 460 (1077)
.++++|++++|++. .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++.+.+..++++++
T Consensus 4 ~l~~~~l~~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i 81 (274)
T PRK13647 4 IIEVEDLHFRYKDG--TKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRSKV 81 (274)
T ss_pred eEEEEEEEEEeCCC--CeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHhhE
Confidence 48999999999632 3589999999999999999999999999999999999999999999999999888888888899
Q ss_pred eEEccCC--CcccccHHHHHhcCCC--CCCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHHhc
Q 001438 461 GLVNQEP--ALFATTIRENILYGKD--DATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIV 536 (1077)
Q Consensus 461 ~~v~Q~~--~lf~~ti~~ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~ 536 (1077)
+|++|+| .++..|++||+.++.. ..+.++..+. ...+.+.+ |+.........+||||||||++|||||+
T Consensus 82 ~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~--~~~~l~~~-----~L~~~~~~~~~~LSgG~~qrv~laraL~ 154 (274)
T PRK13647 82 GLVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERR--VEEALKAV-----RMWDFRDKPPYHLSYGQKKRVAIAGVLA 154 (274)
T ss_pred EEEecChhhhhccCcHHHHHHhhHHHcCCCHHHHHHH--HHHHHHHC-----CCHHHhcCChhhCCHHHHHHHHHHHHHH
Confidence 9999998 5778899999998642 1222221111 11122211 2223344556789999999999999999
Q ss_pred cCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCeEEEEccCchhHh-hcCEEEEEECCEEEEecChhHH
Q 001438 537 KNPSILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLSTIR-NADVIAVVQGRKIVKTGSHEEL 605 (1077)
Q Consensus 537 ~~p~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~vtH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l 605 (1077)
.+|++|||||||++||+.+.+.+.+.|+++. +++|+|++||+++.+. .||+|++|++|++++.|+++++
T Consensus 155 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 225 (274)
T PRK13647 155 MDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVDLAAEWADQVIVLKEGRVLAEGDKSLL 225 (274)
T ss_pred cCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHh
Confidence 9999999999999999999999999998874 4899999999999985 5999999999999999998654
|
|
| >cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-41 Score=369.91 Aligned_cols=220 Identities=35% Similarity=0.589 Sum_probs=182.3
Q ss_pred EEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHHHhhhee
Q 001438 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIG 461 (1077)
Q Consensus 382 i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 461 (1077)
++++|++++|++. .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+...+++.++
T Consensus 1 l~~~~l~~~~~~~--~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 78 (242)
T cd03295 1 IEFENVTKRYGGG--KKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRRKIG 78 (242)
T ss_pred CEEEEEEEEeCCc--ceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcCChHHhhcceE
Confidence 4689999999742 35899999999999999999999999999999999999999999999999998877777888999
Q ss_pred EEccCCCccc-ccHHHHHhcCCC--CCCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHHhccC
Q 001438 462 LVNQEPALFA-TTIRENILYGKD--DATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKN 538 (1077)
Q Consensus 462 ~v~Q~~~lf~-~ti~~ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~~~ 538 (1077)
|+||+|.+|+ .|++||+.++.. ....++.. .+...+.+.+ .++. +....+.+.+||||||||++||||++.+
T Consensus 79 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~--~~~~~~l~~l-~l~~--~~~~~~~~~~LS~G~~qrv~laral~~~ 153 (242)
T cd03295 79 YVIQQIGLFPHMTVEENIALVPKLLKWPKEKIR--ERADELLALV-GLDP--AEFADRYPHELSGGQQQRVGVARALAAD 153 (242)
T ss_pred EEccCccccCCCcHHHHHHHHHHHcCCCHHHHH--HHHHHHHHHc-CCCc--HHHHhcChhhCCHHHHHHHHHHHHHhcC
Confidence 9999999996 599999987531 11111111 1111222222 2221 0134567789999999999999999999
Q ss_pred CCEEEEeCcCCCCCHHHHHHHHHHHHHHh--CCCeEEEEccCchhHhh-cCEEEEEECCEEEEecChhHHhcC
Q 001438 539 PSILLLDEATSALDAESENSVQEALDRVM--VGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELISN 608 (1077)
Q Consensus 539 p~illlDEpts~lD~~~~~~i~~~l~~~~--~~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 608 (1077)
|+++||||||++||+.+.+.+.+.|+++. .++|+|++||+++.+.. ||+|++|++|++++.|+++++.+.
T Consensus 154 p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 226 (242)
T cd03295 154 PPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQVGTPDEILRS 226 (242)
T ss_pred CCEEEecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHHcC
Confidence 99999999999999999999999999875 38999999999998754 999999999999999999998754
|
ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14242 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-41 Score=371.66 Aligned_cols=224 Identities=31% Similarity=0.554 Sum_probs=183.8
Q ss_pred cEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccC-----CCccEEEECCeeCCC--CCH
Q 001438 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYE-----PLSGEILLDGNNIKG--LDL 453 (1077)
Q Consensus 381 ~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~-----~~~G~i~~~g~~~~~--~~~ 453 (1077)
.|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|+++.. .+.
T Consensus 6 ~l~~~~l~~~~~~---~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 82 (253)
T PRK14242 6 KMEARGLSFFYGD---FQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVDV 82 (253)
T ss_pred EEEEeeeEEEECC---eeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccccCH
Confidence 5899999999963 358999999999999999999999999999999999975 589999999999865 344
Q ss_pred HHHhhheeEEccCCCcccccHHHHHhcCCCC--C-CHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHH
Q 001438 454 KWLRQQIGLVNQEPALFATTIRENILYGKDD--A-TMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIA 530 (1077)
Q Consensus 454 ~~~r~~i~~v~Q~~~lf~~ti~~ni~~~~~~--~-~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~ 530 (1077)
..+|++++|++|++.+|+.|++||+.++... . ..++..+. .....+.+ .+.+...+..+..+.+||||||||++
T Consensus 83 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~--~~~~l~~~-~l~~~~~~~~~~~~~~LSgGq~qrv~ 159 (253)
T PRK14242 83 VELRRRVGMVFQKPNPFPKSIFENVAYGLRVNGVKDKAYLAER--VERSLRHA-ALWDEVKDRLHESALGLSGGQQQRLC 159 (253)
T ss_pred HHHhhcEEEEecCCCCCcCcHHHHHHHHHHHcCCCCHHHHHHH--HHHHHHHc-CCchhhhHHhhCCcccCCHHHHHHHH
Confidence 5678899999999999989999999875311 1 11111111 11111111 12222234456778899999999999
Q ss_pred HHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEccCchhHhh-cCEEEEEECCEEEEecChhHHhcCC
Q 001438 531 ISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELISNP 609 (1077)
Q Consensus 531 lARal~~~p~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~ 609 (1077)
||||++.+|++|||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+.. ||+|++|++|++++.|+++++.+.+
T Consensus 160 laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~ 239 (253)
T PRK14242 160 IARALAVEPEVLLMDEPASALDPIATQKIEELIHELKARYTIIIVTHNMQQAARVSDVTAFFYMGKLIEVGPTEQIFTRP 239 (253)
T ss_pred HHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCeEEEEEecHHHHHHhCCEEEEEECCEEEEeCCHHHHHcCC
Confidence 999999999999999999999999999999999988778999999999999865 9999999999999999999987654
Q ss_pred C
Q 001438 610 N 610 (1077)
Q Consensus 610 ~ 610 (1077)
.
T Consensus 240 ~ 240 (253)
T PRK14242 240 R 240 (253)
T ss_pred C
Confidence 3
|
|
| >PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-41 Score=381.93 Aligned_cols=230 Identities=27% Similarity=0.407 Sum_probs=189.7
Q ss_pred cEEEEeEEEEcCCCC----------CcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCC
Q 001438 381 HIEFKDVSFCYPSRP----------DVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKG 450 (1077)
Q Consensus 381 ~i~~~~v~~~y~~~~----------~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~ 450 (1077)
-++++|++++|+.+. ...+++|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|+++.+
T Consensus 8 ~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~G~~i~~ 87 (331)
T PRK15079 8 LLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLLG 87 (331)
T ss_pred eEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCCcEEEECCEECCc
Confidence 589999999996321 2468999999999999999999999999999999999999999999999999988
Q ss_pred CCHHH---HhhheeEEccCC--Cccc-ccHHHHHhcCCC----CCCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCC
Q 001438 451 LDLKW---LRQQIGLVNQEP--ALFA-TTIRENILYGKD----DATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQ 520 (1077)
Q Consensus 451 ~~~~~---~r~~i~~v~Q~~--~lf~-~ti~~ni~~~~~----~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~ 520 (1077)
++..+ +|++|+||+|+| .+++ .|+.|||.++.. ..+.++..+.. .++.+.+ .++ +......+.+
T Consensus 88 ~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~~~~~~~~~~~~--~~~l~~v-gl~---~~~~~~~p~~ 161 (331)
T PRK15079 88 MKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRV--KAMMLKV-GLL---PNLINRYPHE 161 (331)
T ss_pred CCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhccCCCHHHHHHHH--HHHHHHc-CCC---hHHhcCCccc
Confidence 87543 567899999998 4674 599999976421 12333322221 1222222 121 1234667789
Q ss_pred CChHHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCeEEEEccCchhHhh-cCEEEEEECCEEE
Q 001438 521 LSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMV--GRTTVVVAHRLSTIRN-ADVIAVVQGRKIV 597 (1077)
Q Consensus 521 LSgGqkqri~lARal~~~p~illlDEpts~lD~~~~~~i~~~l~~~~~--~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~ 597 (1077)
||||||||++|||||+.+|++||+||||++||..++..+.+.|+++.+ +.|+|+|||+++.+.. ||+|++|++|+|+
T Consensus 162 LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl~~~~~~~dri~vl~~G~iv 241 (331)
T PRK15079 162 FSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLAVVKHISDRVLVMYLGHAV 241 (331)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 999999999999999999999999999999999999999999998753 8999999999999976 9999999999999
Q ss_pred EecChhHHhcCCCchHHHH
Q 001438 598 KTGSHEELISNPNSAYAAL 616 (1077)
Q Consensus 598 ~~g~~~~l~~~~~~~~~~~ 616 (1077)
+.|+++++..++...|.+.
T Consensus 242 e~g~~~~i~~~~~~py~~~ 260 (331)
T PRK15079 242 ELGTYDEVYHNPLHPYTKA 260 (331)
T ss_pred EEcCHHHHHcCCCCHHHHH
Confidence 9999999998777777653
|
|
| >PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-41 Score=388.92 Aligned_cols=221 Identities=31% Similarity=0.524 Sum_probs=184.1
Q ss_pred cEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHHHhhhe
Q 001438 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQI 460 (1077)
Q Consensus 381 ~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i 460 (1077)
.++++|++++|++ ..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++.+.+.. +++|
T Consensus 3 ~l~i~~l~~~~~~---~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~~~~~--~~~i 77 (369)
T PRK11000 3 SVTLRNVTKAYGD---VVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPA--ERGV 77 (369)
T ss_pred EEEEEEEEEEeCC---eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHh--HCCE
Confidence 4899999999963 3589999999999999999999999999999999999999999999999999766543 4679
Q ss_pred eEEccCCCcccc-cHHHHHhcCCCC--CCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHHhcc
Q 001438 461 GLVNQEPALFAT-TIRENILYGKDD--ATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVK 537 (1077)
Q Consensus 461 ~~v~Q~~~lf~~-ti~~ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~~ 537 (1077)
+||+|++.+|+. |++||+.++... ...++..+ +.... ++.+ |++........+||||||||++|||||+.
T Consensus 78 ~~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~--~~~~~---l~~l--gL~~~~~~~~~~LSgGq~QRvaLAraL~~ 150 (369)
T PRK11000 78 GMVFQSYALYPHLSVAENMSFGLKLAGAKKEEINQ--RVNQV---AEVL--QLAHLLDRKPKALSGGQRQRVAIGRTLVA 150 (369)
T ss_pred EEEeCCcccCCCCCHHHHHHhHHhhcCCCHHHHHH--HHHHH---HHHc--CChhhhcCChhhCCHHHHHHHHHHHHHhc
Confidence 999999999975 999999987421 12222111 11111 2222 33444556677999999999999999999
Q ss_pred CCCEEEEeCcCCCCCHHHHHHHHHHHHHHh--CCCeEEEEccCchhHhh-cCEEEEEECCEEEEecChhHHhcCCCchH
Q 001438 538 NPSILLLDEATSALDAESENSVQEALDRVM--VGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELISNPNSAY 613 (1077)
Q Consensus 538 ~p~illlDEpts~lD~~~~~~i~~~l~~~~--~~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~~~~~ 613 (1077)
+|++|||||||++||+.+++.+.+.|+++. .+.|+|+|||+++.+.. ||+|++|++|++++.|+++++...+...|
T Consensus 151 ~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~~~~~~~d~i~vl~~G~i~~~g~~~~i~~~p~~~~ 229 (369)
T PRK11000 151 EPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYPANRF 229 (369)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCcccHH
Confidence 999999999999999999999999998874 38999999999998765 99999999999999999999987655443
|
|
| >COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-42 Score=356.69 Aligned_cols=225 Identities=36% Similarity=0.544 Sum_probs=189.7
Q ss_pred cEEEEeEEEEcCCCCC---------------------cccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCcc
Q 001438 381 HIEFKDVSFCYPSRPD---------------------VAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSG 439 (1077)
Q Consensus 381 ~i~~~~v~~~y~~~~~---------------------~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G 439 (1077)
.|+++||++-|+.+++ ..-++|+||+|+.||+..|.|-||||||||++++.|+++|++|
T Consensus 4 ~i~i~nv~kiFG~~~~~a~~~~~~G~~k~ei~~~tg~vvGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiept~G 83 (386)
T COG4175 4 KIEIKNVYKIFGKNPKRALKLLDQGKSKAEILKKTGLVVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRG 83 (386)
T ss_pred eEEeecceeecccCHHHHHHHHHcCCcHHHHHHhhCcEEeeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCCCCCc
Confidence 5888899888865331 1137899999999999999999999999999999999999999
Q ss_pred EEEECCeeCCCCCHHHHh----hheeEEccCCCcccc-cHHHHHhcCCCCC------CHHHHHHHHHHHhHHHHHhcCcc
Q 001438 440 EILLDGNNIKGLDLKWLR----QQIGLVNQEPALFAT-TIRENILYGKDDA------TMEEITRAAKLSEAMSFISNLPE 508 (1077)
Q Consensus 440 ~i~~~g~~~~~~~~~~~r----~~i~~v~Q~~~lf~~-ti~~ni~~~~~~~------~~~~~~~~~~~~~~~~~i~~l~~ 508 (1077)
+|+++|.|+..++.+++| ++++.|+|+.-|++- ||.||..||.+-. +.+...++++++++.+
T Consensus 84 ~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhrtVl~Nv~fGLev~Gv~~~er~~~a~~~l~~VgL~~------- 156 (386)
T COG4175 84 EILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHRTVLENVAFGLEVQGVPKAEREERALEALELVGLEG------- 156 (386)
T ss_pred eEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccchhHhhhhhcceeecCCCHHHHHHHHHHHHHHcCchh-------
Confidence 999999999999977654 479999999999976 9999999997421 1222333444444333
Q ss_pred chhhhhcCCCCCCChHHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh--CCCeEEEEccCchhH-hhc
Q 001438 509 RFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVM--VGRTTVVVAHRLSTI-RNA 585 (1077)
Q Consensus 509 g~~t~~~~~g~~LSgGqkqri~lARal~~~p~illlDEpts~lD~~~~~~i~~~l~~~~--~~~t~i~vtH~~~~~-~~~ 585 (1077)
.-...+.+||||+|||+.|||||..+|+|||+|||+|||||--+..+++.|.++. -+||+|+|||+++.. +..
T Consensus 157 ----~~~~yp~eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR~~mQdeLl~Lq~~l~KTIvFitHDLdEAlriG 232 (386)
T COG4175 157 ----YADKYPNELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQAKLKKTIVFITHDLDEALRIG 232 (386)
T ss_pred ----hhhcCcccccchHHHHHHHHHHHccCCCEEEecCchhhcChHHHHHHHHHHHHHHHHhCCeEEEEecCHHHHHhcc
Confidence 3344566899999999999999999999999999999999999999999988764 379999999999975 569
Q ss_pred CEEEEEECCEEEEecChhHHhcCCCchHHHH
Q 001438 586 DVIAVVQGRKIVKTGSHEELISNPNSAYAAL 616 (1077)
Q Consensus 586 d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~ 616 (1077)
|||.+|++|+|++.|||+|++.+|...|-.-
T Consensus 233 ~rIaimkdG~ivQ~Gtp~eIl~~PAndYV~~ 263 (386)
T COG4175 233 DRIAIMKDGEIVQVGTPEEILLNPANDYVRD 263 (386)
T ss_pred ceEEEecCCeEEEeCCHHHHHcCccHHHHHH
Confidence 9999999999999999999999887777543
|
|
| >PRK13537 nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-42 Score=380.26 Aligned_cols=218 Identities=26% Similarity=0.466 Sum_probs=182.5
Q ss_pred ccEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHHHhhh
Q 001438 380 GHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQ 459 (1077)
Q Consensus 380 ~~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~ 459 (1077)
..++++|++++|++ ..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+ ...|++
T Consensus 6 ~~i~i~~l~k~~~~---~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~~-~~~~~~ 81 (306)
T PRK13537 6 APIDFRNVEKRYGD---KLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRA-RHARQR 81 (306)
T ss_pred ceEEEEeEEEEECC---eEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccch-HHHHhc
Confidence 36999999999963 46999999999999999999999999999999999999999999999999987654 457889
Q ss_pred eeEEccCCCccc-ccHHHHHhcCCC--CCCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHHhc
Q 001438 460 IGLVNQEPALFA-TTIRENILYGKD--DATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIV 536 (1077)
Q Consensus 460 i~~v~Q~~~lf~-~ti~~ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~ 536 (1077)
|||+||++.++. .|++||+.+... ..+..+..+ +..++.+.+ .+++..++. ..+||||||||++|||||+
T Consensus 82 ig~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~--~~~~~l~~~-~l~~~~~~~----~~~LS~G~~qrl~la~aL~ 154 (306)
T PRK13537 82 VGVVPQFDNLDPDFTVRENLLVFGRYFGLSAAAARA--LVPPLLEFA-KLENKADAK----VGELSGGMKRRLTLARALV 154 (306)
T ss_pred EEEEeccCcCCCCCcHHHHHHHHHHHcCCCHHHHHH--HHHHHHHHc-CCchHhcCc----hhhCCHHHHHHHHHHHHHh
Confidence 999999999986 599999985321 112222221 112233322 344444444 4589999999999999999
Q ss_pred cCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCeEEEEccCchhHhh-cCEEEEEECCEEEEecChhHHhcC
Q 001438 537 KNPSILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELISN 608 (1077)
Q Consensus 537 ~~p~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 608 (1077)
.+|++|+|||||++||+.+++.+.+.|+++. +|+|+|++||+++.+.. ||+|++|++|++++.|+++++.+.
T Consensus 155 ~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~till~sH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~~~ 228 (306)
T PRK13537 155 NDPDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFMEEAERLCDRLCVIEEGRKIAEGAPHALIES 228 (306)
T ss_pred CCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhc
Confidence 9999999999999999999999999999875 48999999999999876 999999999999999999998654
|
|
| >PRK11607 potG putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-41 Score=385.63 Aligned_cols=224 Identities=32% Similarity=0.552 Sum_probs=186.7
Q ss_pred cccEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHHHhh
Q 001438 379 SGHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQ 458 (1077)
Q Consensus 379 ~~~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~ 458 (1077)
...++++|++++|++ ..+|+|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++.+.+. .++
T Consensus 17 ~~~l~l~~v~~~~~~---~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~--~~r 91 (377)
T PRK11607 17 TPLLEIRNLTKSFDG---QHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPP--YQR 91 (377)
T ss_pred CceEEEEeEEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCH--HHC
Confidence 346999999999963 358999999999999999999999999999999999999999999999999987654 467
Q ss_pred heeEEccCCCcccc-cHHHHHhcCCCC--CCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHHh
Q 001438 459 QIGLVNQEPALFAT-TIRENILYGKDD--ATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAI 535 (1077)
Q Consensus 459 ~i~~v~Q~~~lf~~-ti~~ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal 535 (1077)
.||||+|++.+|+. |++|||.|+... ....+..+ +..++.+. + |+.........+||||||||++|||||
T Consensus 92 ~ig~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~--~v~~~l~~---l--~L~~~~~~~~~~LSgGq~QRVaLARAL 164 (377)
T PRK11607 92 PINMMFQSYALFPHMTVEQNIAFGLKQDKLPKAEIAS--RVNEMLGL---V--HMQEFAKRKPHQLSGGQRQRVALARSL 164 (377)
T ss_pred CEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHH--HHHHHHHH---c--CCchhhcCChhhCCHHHHHHHHHHHHH
Confidence 89999999999986 999999987531 22222211 11222222 2 233344566779999999999999999
Q ss_pred ccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh--CCCeEEEEccCchhHh-hcCEEEEEECCEEEEecChhHHhcCCCch
Q 001438 536 VKNPSILLLDEATSALDAESENSVQEALDRVM--VGRTTVVVAHRLSTIR-NADVIAVVQGRKIVKTGSHEELISNPNSA 612 (1077)
Q Consensus 536 ~~~p~illlDEpts~lD~~~~~~i~~~l~~~~--~~~t~i~vtH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~~~~~~ 612 (1077)
+.+|++||||||||+||..+++.+.+.|+++. .+.|+|+|||+++.+. .||+|++|++|++++.|+++|+..++...
T Consensus 165 ~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~~~~~p~~~ 244 (377)
T PRK11607 165 AKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQEEAMTMAGRIAIMNRGKFVQIGEPEEIYEHPTTR 244 (377)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEeCCEEEEEcCHHHHHhCCccH
Confidence 99999999999999999999999998887764 3799999999999875 59999999999999999999999876655
Q ss_pred HH
Q 001438 613 YA 614 (1077)
Q Consensus 613 ~~ 614 (1077)
|.
T Consensus 245 ~~ 246 (377)
T PRK11607 245 YS 246 (377)
T ss_pred HH
Confidence 43
|
|
| >cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-41 Score=367.38 Aligned_cols=220 Identities=35% Similarity=0.572 Sum_probs=182.2
Q ss_pred EEEEeEEEEcCCCC-CcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHH---HHh
Q 001438 382 IEFKDVSFCYPSRP-DVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLK---WLR 457 (1077)
Q Consensus 382 i~~~~v~~~y~~~~-~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~---~~r 457 (1077)
|+++|++++|+++. ..++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+.. ..+
T Consensus 2 i~~~~l~~~~~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (233)
T cd03258 2 IELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRKAR 81 (233)
T ss_pred eEEecceEEccCCCCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHH
Confidence 68999999997431 12699999999999999999999999999999999999999999999999999876543 347
Q ss_pred hheeEEccCCCccc-ccHHHHHhcCCC--CCCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHH
Q 001438 458 QQIGLVNQEPALFA-TTIRENILYGKD--DATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRA 534 (1077)
Q Consensus 458 ~~i~~v~Q~~~lf~-~ti~~ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARa 534 (1077)
+.++|+||++.+|+ .|++||+.++.. .....+..+ ...+.++.+ |++........+||||||||++||||
T Consensus 82 ~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~la~a 154 (233)
T cd03258 82 RRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIEE-----RVLELLELV--GLEDKADAYPAQLSGGQKQRVGIARA 154 (233)
T ss_pred hheEEEccCcccCCCCcHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHHC--CChhhhhcChhhCCHHHHHHHHHHHH
Confidence 78999999999997 599999987532 112111111 111223333 34444556678999999999999999
Q ss_pred hccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh--CCCeEEEEccCchhHhh-cCEEEEEECCEEEEecChhHHhcC
Q 001438 535 IVKNPSILLLDEATSALDAESENSVQEALDRVM--VGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELISN 608 (1077)
Q Consensus 535 l~~~p~illlDEpts~lD~~~~~~i~~~l~~~~--~~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 608 (1077)
++.+|+++||||||++||+.+.+.+.+.|+++. .++|+|++||+++.+.. ||++++|++|++++.|+++++.++
T Consensus 155 l~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 231 (233)
T cd03258 155 LANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEMEVVKRICDRVAVMEKGEVVEEGTVEEVFAN 231 (233)
T ss_pred HhcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHhcC
Confidence 999999999999999999999999999998874 38999999999999865 999999999999999999888653
|
Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-42 Score=335.90 Aligned_cols=219 Identities=29% Similarity=0.484 Sum_probs=183.7
Q ss_pred EEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHHHhhhee
Q 001438 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIG 461 (1077)
Q Consensus 382 i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 461 (1077)
+++++++++|++ ...+++|+||+++.||++||.|||||||||++++|..++.|++|+|++||.|... ++...|++||
T Consensus 2 l~v~~l~K~y~~--~v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~~~-~p~~vrr~IG 78 (245)
T COG4555 2 LEVTDLTKSYGS--KVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVR-DPSFVRRKIG 78 (245)
T ss_pred eeeeehhhhccC--HHhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCCCceEEEeeccccc-ChHHHhhhcc
Confidence 688999999975 2458999999999999999999999999999999999999999999999999865 4566788999
Q ss_pred EEccCCCcccc-cHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHHhccCCC
Q 001438 462 LVNQEPALFAT-TIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPS 540 (1077)
Q Consensus 462 ~v~Q~~~lf~~-ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~~~p~ 540 (1077)
.++-+.-++.. |++|||.|.............++.+.+.+.+ +++.....+..++|-|+|||++|||||++||+
T Consensus 79 Vl~~e~glY~RlT~rEnl~~Fa~L~~l~~~~~kari~~l~k~l-----~l~~~~~rRv~~~S~G~kqkV~iARAlvh~P~ 153 (245)
T COG4555 79 VLFGERGLYARLTARENLKYFARLNGLSRKEIKARIAELSKRL-----QLLEYLDRRVGEFSTGMKQKVAIARALVHDPS 153 (245)
T ss_pred eecCCcChhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHh-----ChHHHHHHHHhhhchhhHHHHHHHHHHhcCCC
Confidence 99988888765 9999998754222222222233444443332 23333444455799999999999999999999
Q ss_pred EEEEeCcCCCCCHHHHHHHHHHHHHHhC-CCeEEEEccCchhHhh-cCEEEEEECCEEEEecChhHHhcC
Q 001438 541 ILLLDEATSALDAESENSVQEALDRVMV-GRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELISN 608 (1077)
Q Consensus 541 illlDEpts~lD~~~~~~i~~~l~~~~~-~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 608 (1077)
+++||||||+||..+.+.+++.+++++. |+++|+.||.++.++. ||+|+++++|+++..|+.+++.+.
T Consensus 154 i~vlDEP~sGLDi~~~r~~~dfi~q~k~egr~viFSSH~m~EvealCDrvivlh~Gevv~~gs~~~l~~r 223 (245)
T COG4555 154 ILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFSSHIMQEVEALCDRVIVLHKGEVVLEGSIEALDAR 223 (245)
T ss_pred eEEEcCCCCCccHHHHHHHHHHHHHhhcCCcEEEEecccHHHHHHhhheEEEEecCcEEEcCCHHHHHHH
Confidence 9999999999999999999999998864 9999999999999985 999999999999999999998653
|
|
| >PRK13651 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-41 Score=377.55 Aligned_cols=221 Identities=27% Similarity=0.488 Sum_probs=181.2
Q ss_pred EEEEeEEEEcCCCC--CcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCC---------
Q 001438 382 IEFKDVSFCYPSRP--DVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKG--------- 450 (1077)
Q Consensus 382 i~~~~v~~~y~~~~--~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~--------- 450 (1077)
|+++|++++|++.. ..++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|.++..
T Consensus 3 i~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 82 (305)
T PRK13651 3 IKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEKEK 82 (305)
T ss_pred EEEEEEEEEECCCCCccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEeceecccccccccccc
Confidence 78999999997432 1358999999999999999999999999999999999999999999999887632
Q ss_pred ---------------CCHHHHhhheeEEccCC--CcccccHHHHHhcCCC--CCCHHHHHHHHHHHhHHHHHhcCccchh
Q 001438 451 ---------------LDLKWLRQQIGLVNQEP--ALFATTIRENILYGKD--DATMEEITRAAKLSEAMSFISNLPERFE 511 (1077)
Q Consensus 451 ---------------~~~~~~r~~i~~v~Q~~--~lf~~ti~~ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~ 511 (1077)
.+...+|++||||+|+| .+|..|++|||.|+.. ....++..+. ..+..+.+ .++.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~--~~~~l~~~-gL~~--- 156 (305)
T PRK13651 83 VLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSMGVSKEEAKKR--AAKYIELV-GLDE--- 156 (305)
T ss_pred cccccccccccccccchHHHHHhceEEEeeCcccccccccHHHHHHhhHHHcCCCHHHHHHH--HHHHHHHc-CCCh---
Confidence 13456788999999986 5788899999998742 1222222221 11222222 2221
Q ss_pred hhhcCCCCCCChHHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCeEEEEccCchhHh-hcCEEE
Q 001438 512 TQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLSTIR-NADVIA 589 (1077)
Q Consensus 512 t~~~~~g~~LSgGqkqri~lARal~~~p~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~vtH~~~~~~-~~d~i~ 589 (1077)
........+||||||||++|||||+.+|++|||||||++||+.+.+.+.+.|+++. .|+|+|+|||+++.+. .||||+
T Consensus 157 ~~~~~~~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~adrv~ 236 (305)
T PRK13651 157 SYLQRSPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLDNVLEWTKRTI 236 (305)
T ss_pred hhhhCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeeCHHHHHHhCCEEE
Confidence 23456778999999999999999999999999999999999999999999998874 5899999999999875 599999
Q ss_pred EEECCEEEEecChhHHhcC
Q 001438 590 VVQGRKIVKTGSHEELISN 608 (1077)
Q Consensus 590 ~l~~G~i~~~g~~~~l~~~ 608 (1077)
+|++|++++.|+++++.++
T Consensus 237 vl~~G~i~~~g~~~~~~~~ 255 (305)
T PRK13651 237 FFKDGKIIKDGDTYDILSD 255 (305)
T ss_pred EEECCEEEEECCHHHHhcC
Confidence 9999999999999998764
|
|
| >COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-41 Score=341.22 Aligned_cols=220 Identities=31% Similarity=0.494 Sum_probs=188.7
Q ss_pred cEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHH-Hhhh
Q 001438 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKW-LRQQ 459 (1077)
Q Consensus 381 ~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~-~r~~ 459 (1077)
.++++|++..|.. ..+|++|||++++||+++++||||+|||||+++|+|+.+|.+|+|.++|+|++..++++ .|..
T Consensus 3 mL~v~~l~~~YG~---~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~~p~~~r~r~G 79 (237)
T COG0410 3 MLEVENLSAGYGK---IQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERARLG 79 (237)
T ss_pred ceeEEeEeecccc---eeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCCCCHHHHHhCC
Confidence 4789999999974 46999999999999999999999999999999999999999999999999999998766 4667
Q ss_pred eeEEccCCCcccc-cHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHHhccC
Q 001438 460 IGLVNQEPALFAT-TIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKN 538 (1077)
Q Consensus 460 i~~v~Q~~~lf~~-ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~~~ 538 (1077)
|+||||...+|+. ||.||+.+|......++..+. ..... .+-+| .+....+.++.+|||||+|.+||||||+.+
T Consensus 80 i~~VPegR~iF~~LTVeENL~~g~~~~~~~~~~~~-~~e~v---~~lFP-~Lker~~~~aG~LSGGEQQMLAiaRALm~~ 154 (237)
T COG0410 80 IAYVPEGRRIFPRLTVEENLLLGAYARRDKEAQER-DLEEV---YELFP-RLKERRNQRAGTLSGGEQQMLAIARALMSR 154 (237)
T ss_pred eEeCcccccchhhCcHHHHHhhhhhcccccccccc-cHHHH---HHHCh-hHHHHhcCcccCCChHHHHHHHHHHHHhcC
Confidence 9999999999987 999999987522211111000 01111 23345 356677888999999999999999999999
Q ss_pred CCEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCeEEEEccCchhHh-hcCEEEEEECCEEEEecChhHHhcC
Q 001438 539 PSILLLDEATSALDAESENSVQEALDRVMV--GRTTVVVAHRLSTIR-NADVIAVVQGRKIVKTGSHEELISN 608 (1077)
Q Consensus 539 p~illlDEpts~lD~~~~~~i~~~l~~~~~--~~t~i~vtH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~~ 608 (1077)
|++|+|||||.+|-|.-.+.|.+.|+++.+ +.||++|-++..... .|||.+||++|+|+.+|+.+||.++
T Consensus 155 PklLLLDEPs~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn~~~Al~iaDr~yvle~Griv~~G~~~eL~~~ 227 (237)
T COG0410 155 PKLLLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQNARFALEIADRGYVLENGRIVLSGTAAELLAD 227 (237)
T ss_pred CCEEEecCCccCcCHHHHHHHHHHHHHHHHcCCcEEEEEeccHHHHHHhhCEEEEEeCCEEEEecCHHHHhcC
Confidence 999999999999999999999999999874 679999999999865 5999999999999999999999875
|
|
| >cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-41 Score=364.47 Aligned_cols=215 Identities=28% Similarity=0.477 Sum_probs=177.3
Q ss_pred EEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHHHhhhee
Q 001438 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIG 461 (1077)
Q Consensus 382 i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 461 (1077)
|+++|+++.|++. ..++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++... ...++++++
T Consensus 1 l~~~~l~~~~~~~-~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~-~~~~~~~i~ 78 (220)
T cd03263 1 LQIRNLTKTYKKG-TKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTD-RKAARQSLG 78 (220)
T ss_pred CEEEeeEEEeCCC-CceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccc-hHHHhhhEE
Confidence 5789999999742 14699999999999999999999999999999999999999999999999998754 356678899
Q ss_pred EEccCCCccc-ccHHHHHhcCCC--CCCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHHhccC
Q 001438 462 LVNQEPALFA-TTIRENILYGKD--DATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKN 538 (1077)
Q Consensus 462 ~v~Q~~~lf~-~ti~~ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~~~ 538 (1077)
|++|++.+++ .|++||+.++.. ....++..+ +..++ ++.+ |+.........+||||||||++||||++.+
T Consensus 79 ~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~--~~~~~---l~~~--~l~~~~~~~~~~LS~G~~qrv~la~al~~~ 151 (220)
T cd03263 79 YCPQFDALFDELTVREHLRFYARLKGLPKSEIKE--EVELL---LRVL--GLTDKANKRARTLSGGMKRKLSLAIALIGG 151 (220)
T ss_pred EecCcCCccccCCHHHHHHHHHHHcCCCHHHHHH--HHHHH---HHHc--CCHHHHhChhhhCCHHHHHHHHHHHHHhcC
Confidence 9999999985 699999987431 112221111 11111 2221 222233445568999999999999999999
Q ss_pred CCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEccCchhHhh-cCEEEEEECCEEEEecChhHH
Q 001438 539 PSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEEL 605 (1077)
Q Consensus 539 p~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l 605 (1077)
|+++||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+.. ||++++|++|++++.|+++++
T Consensus 152 p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~ 219 (220)
T cd03263 152 PSVLLLDEPTSGLDPASRRAIWDLILEVRKGRSIILTTHSMDEAEALCDRIAIMSDGKLRCIGSPQEL 219 (220)
T ss_pred CCEEEECCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhcCEEEEEECCEEEecCCHHHc
Confidence 9999999999999999999999999988777999999999999865 999999999999999998875
|
Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. |
| >TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-39 Score=398.79 Aligned_cols=387 Identities=18% Similarity=0.207 Sum_probs=323.8
Q ss_pred HHHHHhh-cccchHHHHHHHHHHHHHhhHHhHHHHHHHHHHHhhccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001438 684 AIKLYSM-VRPDWTYGVCGTICAIIAGAQMPLFALGVSQALVAYYMDWDTTQREVKKITILFCCAAVITVIVHAIEHLSF 762 (1077)
Q Consensus 684 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 762 (1077)
.++++++ .+++++.+...++++++......+.++.+..+++....... ......+.+.++++.++..++.+++.+..
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~p~~~~~iid~v~~~~~--~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (686)
T TIGR03797 123 LRDLLRFALRGARRDLLAILAMGLLGTLLGMLVPIATGILIGTAIPDAD--RSLLVQIALALLAAAVGAAAFQLAQSLAV 200 (686)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC--hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444 45666666666666666666666677777777765543211 11222334455566667788889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCccccccccCCchhHHHHHhhcHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhHHH
Q 001438 763 GIMGERLTLRVREKMFSAILSNEIGWFDEMDNSSSILASRLESDATLLRTIVVDRSTILIQNFGLVTASFVIAFILNWRI 842 (1077)
Q Consensus 763 ~~~~~~~~~~Lr~~l~~~llr~p~~FFD~~~~~~G~IlnR~s~D~~~i~~~l~~~l~~~~~~~~~~~~~i~i~~~~~w~l 842 (1077)
...+.++..++|.++|+++++.|++||+. +++|++++|++ |++.+++.+...+...+..+..+++.++++++++|++
T Consensus 201 ~~~~~~~~~~l~~~~~~~ll~~~~~~~~~--~~~g~~~~r~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l 277 (686)
T TIGR03797 201 LRLETRMDASLQAAVWDRLLRLPVSFFRQ--YSTGDLASRAM-GISQIRRILSGSTLTTLLSGIFALLNLGLMFYYSWKL 277 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCHHHHCC--CChhHHHHHHh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999995 99999999997 8999999998888777777777788888999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhHHHHHHHcchHHHHHhcchHHHHHHHHHHhhhhhHHHHHHHHH
Q 001438 843 TLVVVATYPLIISGHISEKLFFQGYGGNLSKAYLKANMLAAEAVSNIRTVAAFCSEDKVLELYSRELVEPSKRSFIRGQI 922 (1077)
Q Consensus 843 ~l~~l~~~Pl~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Etl~Gi~tIrAf~~e~~~~~~f~~~~~~~~~~~~~~~~~ 922 (1077)
++++++++|+.++...+..+..++..++..+...+..+.+.|+++|+.|||+++.|+++.++|.+..++..+...+....
T Consensus 278 ~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 357 (686)
T TIGR03797 278 ALVAVALALVAIAVTLVLGLLQVRKERRLLELSGKISGLTVQLINGISKLRVAGAENRAFARWAKLFSRQRKLELSAQRI 357 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999988887777777777777778888888889999999999999999999999999999999999888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHcCCCC
Q 001438 923 AGIFYGISQFFIFSSYGLALWYGSVLMGKELASFKSVMKSFMVLIVTALAMGETLALVPDLLKGNQMAASVFEVLDRKTQ 1002 (1077)
Q Consensus 923 ~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~l~~~~~ 1002 (1077)
.++...+...+..+...+++|+|+.++..|.+++|.++++.++......|+..+......++.+..+.+|+.++++.+++
T Consensus 358 ~~~~~~~~~~i~~~~~~~il~~g~~lv~~g~ltiG~lva~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e 437 (686)
T TIGR03797 358 ENLLTVFNAVLPVLTSAALFAAAISLLGGAGLSLGSFLAFNTAFGSFSGAVTQLSNTLISILAVIPLWERAKPILEALPE 437 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc
Confidence 88888888888888888999999999999999999999999998888999999999999999999999999999987665
Q ss_pred ccCCCCcccccccccEEEeeeeeeCCCCCcccccccceeeeeCCCEEEEECCCCCCHHHHHHHHhhccCCCCCCC
Q 001438 1003 VIGDIGEELTNVEGTIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKA 1077 (1077)
Q Consensus 1003 ~~~~~~~~~~~~~G~I~f~nVsf~Y~~~~~~~VLk~vsl~I~~GekVaIVGrTGsGKSTLi~lL~Rfyd~~~G~i 1077 (1077)
.+... ....+.+|.|+|+||+|+||+. +.+||+|+||+|+|||+||||||||||||||+++|.|+|+|++|+|
T Consensus 438 ~~~~~-~~~~~~~~~I~~~nvsf~Y~~~-~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I 510 (686)
T TIGR03797 438 VDEAK-TDPGKLSGAIEVDRVTFRYRPD-GPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSV 510 (686)
T ss_pred cccCc-CCCCCCCceEEEEEEEEEcCCC-CccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEE
Confidence 43211 1122346899999999999754 3468999999999999999999999999999999999999999986
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif |
| >cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-41 Score=367.56 Aligned_cols=215 Identities=37% Similarity=0.579 Sum_probs=180.6
Q ss_pred EEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCC---HHHHhh
Q 001438 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLD---LKWLRQ 458 (1077)
Q Consensus 382 i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~---~~~~r~ 458 (1077)
++++|++++|+++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+ ...+++
T Consensus 1 l~~~~l~~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 78 (241)
T cd03256 1 IEVENLSKTYPNG--KKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLRR 78 (241)
T ss_pred CEEeeEEEecCCc--cEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccCHhHHHHHHh
Confidence 4789999999641 35899999999999999999999999999999999999999999999999998776 456788
Q ss_pred heeEEccCCCccc-ccHHHHHhcCCCCC-----------CHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHH
Q 001438 459 QIGLVNQEPALFA-TTIRENILYGKDDA-----------TMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQK 526 (1077)
Q Consensus 459 ~i~~v~Q~~~lf~-~ti~~ni~~~~~~~-----------~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqk 526 (1077)
.++|+||++.+|+ .|++||+.++.... ..+...+ ..+.++.+ |+.......+.+||||||
T Consensus 79 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~l~~~--~l~~~~~~~~~~LS~G~~ 150 (241)
T cd03256 79 QIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQR------ALAALERV--GLLDKAYQRADQLSGGQQ 150 (241)
T ss_pred ccEEEcccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHH------HHHHHHHc--CChhhhCCCcccCCHHHH
Confidence 8999999999887 59999998753210 1111111 11222222 344445667889999999
Q ss_pred HHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh--CCCeEEEEccCchhHh-hcCEEEEEECCEEEEecChh
Q 001438 527 QRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVM--VGRTTVVVAHRLSTIR-NADVIAVVQGRKIVKTGSHE 603 (1077)
Q Consensus 527 qri~lARal~~~p~illlDEpts~lD~~~~~~i~~~l~~~~--~~~t~i~vtH~~~~~~-~~d~i~~l~~G~i~~~g~~~ 603 (1077)
||++||||++.+|+++||||||++||+.+.+.+.+.|+++. .|+|+|++||+++.+. .||++++|++|++++.|+++
T Consensus 151 qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~ 230 (241)
T cd03256 151 QRVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVDLAREYADRIVGLKDGRIVFDGPPA 230 (241)
T ss_pred HHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecCHH
Confidence 99999999999999999999999999999999999998874 3899999999999987 59999999999999999998
Q ss_pred HHh
Q 001438 604 ELI 606 (1077)
Q Consensus 604 ~l~ 606 (1077)
++.
T Consensus 231 ~~~ 233 (241)
T cd03256 231 ELT 233 (241)
T ss_pred Hhh
Confidence 863
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14268 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-41 Score=370.02 Aligned_cols=228 Identities=27% Similarity=0.490 Sum_probs=185.5
Q ss_pred ccEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCC-----CccEEEECCeeCCCCC--
Q 001438 380 GHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEP-----LSGEILLDGNNIKGLD-- 452 (1077)
Q Consensus 380 ~~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~-----~~G~i~~~g~~~~~~~-- 452 (1077)
..|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|+++...+
T Consensus 11 ~~l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~ 87 (258)
T PRK14268 11 PQIKVENLNLWYGE---KQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVD 87 (258)
T ss_pred eeEEEeeeEEEeCC---eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccch
Confidence 36999999999963 3589999999999999999999999999999999999985 7999999999986532
Q ss_pred HHHHhhheeEEccCCCcccccHHHHHhcCCC--CCCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHH
Q 001438 453 LKWLRQQIGLVNQEPALFATTIRENILYGKD--DATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIA 530 (1077)
Q Consensus 453 ~~~~r~~i~~v~Q~~~lf~~ti~~ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~ 530 (1077)
...+|+.++|++|++.+|+.|++||+.++.. ....++..+ +...+.+.+ .+.+...........+||||||||++
T Consensus 88 ~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~--~~~~~l~~~-~l~~~~~~~~~~~~~~LSgG~~qrv~ 164 (258)
T PRK14268 88 VVELRKNVGMVFQKPNPFPMSIYDNVAYGPRIHGANKKDLDG--VVENALRSA-ALWDETSDRLKSPALSLSGGQQQRLC 164 (258)
T ss_pred HHHHhhhEEEEecCCccCcccHHHHHHHHHHHcCCCHHHHHH--HHHHHHHHc-CCCcchhhhhcCChhhCCHHHHHHHH
Confidence 3456788999999999999999999987531 112222111 111122222 12111223445667799999999999
Q ss_pred HHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEccCchhHhh-cCEEEEEECCEEEEecChhHHhcCC
Q 001438 531 ISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELISNP 609 (1077)
Q Consensus 531 lARal~~~p~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~ 609 (1077)
||||++.+|+++||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+.. ||+|++|++|++++.|+++++..++
T Consensus 165 laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~ 244 (258)
T PRK14268 165 IARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLKKDYTIVIVTHNMQQAARISDYTGFFLMGELIEFGQTRQIFHNP 244 (258)
T ss_pred HHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhhCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcCC
Confidence 999999999999999999999999999999999988778999999999999865 9999999999999999999997654
Q ss_pred CchH
Q 001438 610 NSAY 613 (1077)
Q Consensus 610 ~~~~ 613 (1077)
...|
T Consensus 245 ~~~~ 248 (258)
T PRK14268 245 REKS 248 (258)
T ss_pred CCHH
Confidence 4444
|
|
| >cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-42 Score=363.06 Aligned_cols=207 Identities=39% Similarity=0.602 Sum_probs=171.6
Q ss_pred EEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHHHhhhee
Q 001438 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIG 461 (1077)
Q Consensus 382 i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 461 (1077)
++++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++.+.+. .+++++
T Consensus 1 l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~--~~~~i~ 75 (213)
T cd03259 1 LELKGLSKTYGS---VRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPP--ERRNIG 75 (213)
T ss_pred CeeeeeEEEeCC---eeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcCch--hhccEE
Confidence 478999999964 358999999999999999999999999999999999999999999999999876543 466899
Q ss_pred EEccCCCccc-ccHHHHHhcCCCC--CCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHHhccC
Q 001438 462 LVNQEPALFA-TTIRENILYGKDD--ATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKN 538 (1077)
Q Consensus 462 ~v~Q~~~lf~-~ti~~ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~~~ 538 (1077)
|+||++.+|+ .|++||+.++... ...++..+. ..+.++.+ |++........+||||||||++|||||+.+
T Consensus 76 ~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~-----~~~~l~~~--~l~~~~~~~~~~LSgG~~qrl~la~al~~~ 148 (213)
T cd03259 76 MVFQDYALFPHLTVAENIAFGLKLRGVPKAEIRAR-----VRELLELV--GLEGLLNRYPHELSGGQQQRVALARALARE 148 (213)
T ss_pred EEcCchhhccCCcHHHHHHhHHHHcCCCHHHHHHH-----HHHHHHHc--CChhhhhcChhhCCHHHHHHHHHHHHHhcC
Confidence 9999999886 4999999875321 112211111 11222222 344445566778999999999999999999
Q ss_pred CCEEEEeCcCCCCCHHHHHHHHHHHHHHh--CCCeEEEEccCchhHhh-cCEEEEEECCEEEEec
Q 001438 539 PSILLLDEATSALDAESENSVQEALDRVM--VGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTG 600 (1077)
Q Consensus 539 p~illlDEpts~lD~~~~~~i~~~l~~~~--~~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~g 600 (1077)
|+++||||||++||+.+++.+.+.|+++. .++|+|++||+++.+.. ||+|++|++|++++.|
T Consensus 149 p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~g 213 (213)
T cd03259 149 PSLLLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQEEALALADRIAVMNEGRIVQVG 213 (213)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhcCEEEEEECCEEEecC
Confidence 99999999999999999999999998874 38999999999998765 9999999999998765
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-41 Score=386.55 Aligned_cols=214 Identities=25% Similarity=0.471 Sum_probs=184.6
Q ss_pred cEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHHHhhhe
Q 001438 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQI 460 (1077)
Q Consensus 381 ~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i 460 (1077)
.++++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++.+++...+++++
T Consensus 3 ~L~~~nls~~y~~---~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~~~~~~~~~i 79 (402)
T PRK09536 3 MIDVSDLSVEFGD---TTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRRV 79 (402)
T ss_pred eEEEeeEEEEECC---EEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcCCHHHHhcce
Confidence 4899999999974 4699999999999999999999999999999999999999999999999999998888899999
Q ss_pred eEEccCCCc-ccccHHHHHhcCCCCC-------CH---HHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHH
Q 001438 461 GLVNQEPAL-FATTIRENILYGKDDA-------TM---EEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRI 529 (1077)
Q Consensus 461 ~~v~Q~~~l-f~~ti~~ni~~~~~~~-------~~---~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri 529 (1077)
|||+|++.+ ++.|++||+.++.... .. +.+.++++.. |+.........+||||||||+
T Consensus 80 g~v~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~v-----------gl~~~~~~~~~~LSgGerQRv 148 (402)
T PRK09536 80 ASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERT-----------GVAQFADRPVTSLSGGERQRV 148 (402)
T ss_pred EEEccCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHc-----------CCchhhcCChhhCCHHHHHHH
Confidence 999999987 5679999999875211 11 1122222222 222233455678999999999
Q ss_pred HHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCeEEEEccCchhHh-hcCEEEEEECCEEEEecChhHHhc
Q 001438 530 AISRAIVKNPSILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLSTIR-NADVIAVVQGRKIVKTGSHEELIS 607 (1077)
Q Consensus 530 ~lARal~~~p~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~vtH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~ 607 (1077)
+|||||+++|++|||||||++||+.++..+++.|+++. +++|+|++||+++.+. .|||+++|++|++++.|+++|++.
T Consensus 149 ~IArAL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~~g~TIIivsHdl~~~~~~adrii~l~~G~iv~~G~~~ev~~ 228 (402)
T PRK09536 149 LLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIHDLDLAARYCDELVLLADGRVRAAGPPADVLT 228 (402)
T ss_pred HHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEecCHHHHhC
Confidence 99999999999999999999999999999999999875 5889999999999985 599999999999999999999886
Q ss_pred C
Q 001438 608 N 608 (1077)
Q Consensus 608 ~ 608 (1077)
.
T Consensus 229 ~ 229 (402)
T PRK09536 229 A 229 (402)
T ss_pred c
Confidence 4
|
|
| >TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-41 Score=363.51 Aligned_cols=207 Identities=31% Similarity=0.531 Sum_probs=169.4
Q ss_pred EEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHH---HHhh
Q 001438 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLK---WLRQ 458 (1077)
Q Consensus 382 i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~---~~r~ 458 (1077)
++++|++++|++. ..++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+.. .+|+
T Consensus 2 l~~~~l~~~~~~~-~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 80 (216)
T TIGR00960 2 IRFEQVSKAYPGG-HQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGREIPFLRR 80 (216)
T ss_pred eEEEEEEEEecCC-CeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcChhHHHHHHH
Confidence 6899999999642 23589999999999999999999999999999999999999999999999998766543 4678
Q ss_pred heeEEccCCCcccc-cHHHHHhcCCCC--CCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHHh
Q 001438 459 QIGLVNQEPALFAT-TIRENILYGKDD--ATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAI 535 (1077)
Q Consensus 459 ~i~~v~Q~~~lf~~-ti~~ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal 535 (1077)
+++|++|++.+|.. |++||+.++... ...++..+ +.... ++.+ |+.........+||||||||++||||+
T Consensus 81 ~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~--~~~~~---l~~~--~l~~~~~~~~~~LSgG~~qrv~laral 153 (216)
T TIGR00960 81 HIGMVFQDHRLLSDRTVYDNVAFPLRIIGVPPRDANE--RVSAA---LEKV--GLEGKAHALPMQLSGGEQQRVAIARAI 153 (216)
T ss_pred hceEEecCccccccccHHHHHHHHHHhcCCCHHHHHH--HHHHH---HHHc--CChhhhhCChhhCCHHHHHHHHHHHHH
Confidence 89999999998875 999999875311 11111111 11111 2222 233334456678999999999999999
Q ss_pred ccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCeEEEEccCchhHhh-cCEEEEEECCEE
Q 001438 536 VKNPSILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLSTIRN-ADVIAVVQGRKI 596 (1077)
Q Consensus 536 ~~~p~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~vtH~~~~~~~-~d~i~~l~~G~i 596 (1077)
+.+|++|||||||++||+.+.+.+.+.|+++. +++|+|+|||+++.+.. ||++++|++|++
T Consensus 154 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i 216 (216)
T TIGR00960 154 VHKPPLLLADEPTGNLDPELSRDIMRLFEEFNRRGTTVLVATHDINLVETYRHRTLTLSRGRL 216 (216)
T ss_pred hcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 99999999999999999999999999998874 48999999999999875 999999999975
|
|
| >TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-41 Score=366.99 Aligned_cols=214 Identities=35% Similarity=0.562 Sum_probs=179.5
Q ss_pred EEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCH---HHHhh
Q 001438 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDL---KWLRQ 458 (1077)
Q Consensus 382 i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~---~~~r~ 458 (1077)
++++|++++|+. +.++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+. ..+|+
T Consensus 2 l~~~~l~~~~~~--~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (243)
T TIGR02315 2 LEVENLSKVYPN--GKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKLRR 79 (243)
T ss_pred eEEEeeeeecCC--CcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCCHHHHHHHHh
Confidence 689999999962 2358999999999999999999999999999999999999999999999999877654 34678
Q ss_pred heeEEccCCCccc-ccHHHHHhcCCCCC-----------CHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHH
Q 001438 459 QIGLVNQEPALFA-TTIRENILYGKDDA-----------TMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQK 526 (1077)
Q Consensus 459 ~i~~v~Q~~~lf~-~ti~~ni~~~~~~~-----------~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqk 526 (1077)
+++|+||++.+|+ .|++||+.++.... ..+.. .+. .+.++.+ |+.......+.+||||||
T Consensus 80 ~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~---~~~---~~~l~~~--~l~~~~~~~~~~LSgG~~ 151 (243)
T TIGR02315 80 RIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDK---ERA---LSALERV--GLADKAYQRADQLSGGQQ 151 (243)
T ss_pred heEEEcCCCcccccccHHHHHhhcccccccchhhhhccccHHHH---HHH---HHHHHHc--CcHhhhcCCcccCCHHHH
Confidence 8999999999887 49999998764211 11111 111 1222222 344455667789999999
Q ss_pred HHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh--CCCeEEEEccCchhHhh-cCEEEEEECCEEEEecChh
Q 001438 527 QRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVM--VGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHE 603 (1077)
Q Consensus 527 qri~lARal~~~p~illlDEpts~lD~~~~~~i~~~l~~~~--~~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~ 603 (1077)
||++||||++.+|+++||||||++||+.+.+.+.+.|+++. .++|+|++||+++.+.. ||++++|++|++++.|+++
T Consensus 152 qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~ 231 (243)
T TIGR02315 152 QRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVDLAKKYADRIVGLKAGEIVFDGAPS 231 (243)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEecCCHH
Confidence 99999999999999999999999999999999999998874 37899999999999854 9999999999999999998
Q ss_pred HH
Q 001438 604 EL 605 (1077)
Q Consensus 604 ~l 605 (1077)
++
T Consensus 232 ~~ 233 (243)
T TIGR02315 232 EL 233 (243)
T ss_pred Hh
Confidence 86
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates. |
| >cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-41 Score=373.81 Aligned_cols=222 Identities=32% Similarity=0.512 Sum_probs=180.5
Q ss_pred EEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHHH----hh
Q 001438 383 EFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWL----RQ 458 (1077)
Q Consensus 383 ~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~----r~ 458 (1077)
.++|+++.|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+ ++
T Consensus 26 ~~~~~~~~~~~---~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~~ 102 (269)
T cd03294 26 SKEEILKKTGQ---TVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRK 102 (269)
T ss_pred hhhhhhhhcCC---ceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccChhhhhhhhcC
Confidence 45678888863 358999999999999999999999999999999999999999999999999987765443 35
Q ss_pred heeEEccCCCccc-ccHHHHHhcCCC--CCCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHHh
Q 001438 459 QIGLVNQEPALFA-TTIRENILYGKD--DATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAI 535 (1077)
Q Consensus 459 ~i~~v~Q~~~lf~-~ti~~ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal 535 (1077)
+++|+||++.+|+ .|++||+.++.. ....++..+ +.. +.++.+ |+.........+||||||||++||||+
T Consensus 103 ~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~--~~~---~~l~~~--~l~~~~~~~~~~LS~Gq~qrv~lAral 175 (269)
T cd03294 103 KISMVFQSFALLPHRTVLENVAFGLEVQGVPRAEREE--RAA---EALELV--GLEGWEHKYPDELSGGMQQRVGLARAL 175 (269)
T ss_pred cEEEEecCcccCCCCcHHHHHHHHHHhcCCCHHHHHH--HHH---HHHHHc--CCHhHhhCCcccCCHHHHHHHHHHHHH
Confidence 7999999999985 599999987531 111111111 111 112222 333344556678999999999999999
Q ss_pred ccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh--CCCeEEEEccCchhHhh-cCEEEEEECCEEEEecChhHHhcCCCch
Q 001438 536 VKNPSILLLDEATSALDAESENSVQEALDRVM--VGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELISNPNSA 612 (1077)
Q Consensus 536 ~~~p~illlDEpts~lD~~~~~~i~~~l~~~~--~~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~~~~ 612 (1077)
+.+|++|||||||++||+.+.+.+.+.|+++. .|+|+|++||+++.+.. ||++++|++|++++.|+++++.+++...
T Consensus 176 ~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~~~~ 255 (269)
T cd03294 176 AVDPDILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLDEALRLGDRIAIMKDGRLVQVGTPEEILTNPAND 255 (269)
T ss_pred hcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHHHhCcCcH
Confidence 99999999999999999999999999998874 37999999999998765 9999999999999999999998765544
Q ss_pred HH
Q 001438 613 YA 614 (1077)
Q Consensus 613 ~~ 614 (1077)
|.
T Consensus 256 ~~ 257 (269)
T cd03294 256 YV 257 (269)
T ss_pred HH
Confidence 44
|
This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14247 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-41 Score=367.22 Aligned_cols=227 Identities=32% Similarity=0.489 Sum_probs=185.2
Q ss_pred cEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCC-----CccEEEECCeeCCCCCHHH
Q 001438 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEP-----LSGEILLDGNNIKGLDLKW 455 (1077)
Q Consensus 381 ~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~-----~~G~i~~~g~~~~~~~~~~ 455 (1077)
.++++|++++|++ .++++|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.++...+...
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~ 79 (250)
T PRK14247 3 KIEIRDLKVSFGQ---VEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIE 79 (250)
T ss_pred eEEEEeeEEEECC---eeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHH
Confidence 4899999999964 3589999999999999999999999999999999999974 6999999999998877778
Q ss_pred HhhheeEEccCCCcc-cccHHHHHhcCCCC----CCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHH
Q 001438 456 LRQQIGLVNQEPALF-ATTIRENILYGKDD----ATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIA 530 (1077)
Q Consensus 456 ~r~~i~~v~Q~~~lf-~~ti~~ni~~~~~~----~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~ 530 (1077)
+|+.|+|+||++.+| +.|++||+.++... ...++..+ +.....+.+ .+.+..+........+||||||||++
T Consensus 80 ~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~--~~~~~l~~~-~l~~~~~~~~~~~~~~LSgG~~qrv~ 156 (250)
T PRK14247 80 LRRRVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKELQE--RVRWALEKA-QLWDEVKDRLDAPAGKLSGGQQQRLC 156 (250)
T ss_pred HhccEEEEeccCccCCCCcHHHHHHHHHHhccccCCHHHHHH--HHHHHHHHc-CCCcchhhhhcCCcccCCHHHHHHHH
Confidence 888999999999866 56999999875321 11111111 111122211 12221223345667799999999999
Q ss_pred HHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEccCchhHh-hcCEEEEEECCEEEEecChhHHhcCC
Q 001438 531 ISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIR-NADVIAVVQGRKIVKTGSHEELISNP 609 (1077)
Q Consensus 531 lARal~~~p~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~vtH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~~~ 609 (1077)
||||++++|+++||||||++||+.+++.+.+.|+++.+++|+|++||+++.+. .||+|++|++|++++.|+++++.+.+
T Consensus 157 laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~ 236 (250)
T PRK14247 157 IARALAFQPEVLLADEPTANLDPENTAKIESLFLELKKDMTIVLVTHFPQQAARISDYVAFLYKGQIVEWGPTREVFTNP 236 (250)
T ss_pred HHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCeEEEECCHHHHHcCC
Confidence 99999999999999999999999999999999998877899999999999985 59999999999999999999987654
Q ss_pred CchH
Q 001438 610 NSAY 613 (1077)
Q Consensus 610 ~~~~ 613 (1077)
...+
T Consensus 237 ~~~~ 240 (250)
T PRK14247 237 RHEL 240 (250)
T ss_pred ccHH
Confidence 4333
|
|
| >TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-41 Score=364.64 Aligned_cols=216 Identities=26% Similarity=0.497 Sum_probs=181.8
Q ss_pred EEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHHHhhhee
Q 001438 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIG 461 (1077)
Q Consensus 382 i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 461 (1077)
++++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+... +++++
T Consensus 2 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~~~~~~~-~~~i~ 77 (236)
T TIGR03864 2 LEVAGLSFAYGA---RRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPRAA-LARLG 77 (236)
T ss_pred EEEEeeEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccCChhh-hhhEE
Confidence 689999999963 35899999999999999999999999999999999999999999999999987766543 45899
Q ss_pred EEccCCCcc-cccHHHHHhcCCCC--CCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHHhccC
Q 001438 462 LVNQEPALF-ATTIRENILYGKDD--ATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKN 538 (1077)
Q Consensus 462 ~v~Q~~~lf-~~ti~~ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~~~ 538 (1077)
|++|++.++ ..|++||+.++... ...++..+ + ..+.++.+ |++...+....+||||||||++||||++.+
T Consensus 78 ~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~--~---~~~~l~~~--gl~~~~~~~~~~LS~G~~qrl~laral~~~ 150 (236)
T TIGR03864 78 VVFQQPTLDLDLSVRQNLRYHAALHGLSRAEARE--R---IAALLARL--GLAERADDKVRELNGGHRRRVEIARALLHR 150 (236)
T ss_pred EeCCCCCCcccCcHHHHHHHHHHhcCCCHHHHHH--H---HHHHHHHc--CChhhhcCChhhCCHHHHHHHHHHHHHhcC
Confidence 999999885 56999999875321 12221111 1 12223332 445556677789999999999999999999
Q ss_pred CCEEEEeCcCCCCCHHHHHHHHHHHHHHh--CCCeEEEEccCchhHhhcCEEEEEECCEEEEecChhHHhcC
Q 001438 539 PSILLLDEATSALDAESENSVQEALDRVM--VGRTTVVVAHRLSTIRNADVIAVVQGRKIVKTGSHEELISN 608 (1077)
Q Consensus 539 p~illlDEpts~lD~~~~~~i~~~l~~~~--~~~t~i~vtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~ 608 (1077)
|+++||||||++||+.+.+.+.+.|+++. +++|+|++||+++.+..||+|++|++|++++.|+++++.+.
T Consensus 151 p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 222 (236)
T TIGR03864 151 PALLLLDEPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVDEIEADDRLVVLHRGRVLADGAAAELRGA 222 (236)
T ss_pred CCEEEEcCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChhhHhhCCEEEEEeCCeEEEeCCHHHHHHH
Confidence 99999999999999999999999999875 48999999999999888999999999999999999988754
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification. |
| >PRK14235 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-41 Score=369.61 Aligned_cols=226 Identities=33% Similarity=0.534 Sum_probs=185.4
Q ss_pred cccEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCC-----CccEEEECCeeCCC--C
Q 001438 379 SGHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEP-----LSGEILLDGNNIKG--L 451 (1077)
Q Consensus 379 ~~~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~-----~~G~i~~~g~~~~~--~ 451 (1077)
.+.|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|+++|+++.. .
T Consensus 17 ~~~l~~~nl~~~~~~---~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~ 93 (267)
T PRK14235 17 EIKMRARDVSVFYGE---KQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRL 93 (267)
T ss_pred CceEEEEeEEEEECC---EEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECccccc
Confidence 457999999999963 3589999999999999999999999999999999999975 89999999999864 3
Q ss_pred CHHHHhhheeEEccCCCcccccHHHHHhcCCC--CC--CHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHH
Q 001438 452 DLKWLRQQIGLVNQEPALFATTIRENILYGKD--DA--TMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQ 527 (1077)
Q Consensus 452 ~~~~~r~~i~~v~Q~~~lf~~ti~~ni~~~~~--~~--~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkq 527 (1077)
+...+|++++|++|+|.+|+.|++||+.++.. .. ..++..+ +.....+.+ .+++.+.+..+..+.+|||||||
T Consensus 94 ~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~--~~~~~l~~~-~l~~~~~~~~~~~~~~LSgGq~q 170 (267)
T PRK14235 94 DVVELRARVGMVFQKPNPFPKSIYENVAYGPRIHGLARSKAELDE--IVETSLRKA-GLWEEVKDRLHEPGTGLSGGQQQ 170 (267)
T ss_pred chHHHhhceEEEecCCCCCCCcHHHHHHHHHHhcccccchHHHHH--HHHHHHHHc-CCchhhhHHhhCCcccCCHHHHH
Confidence 45567889999999999998899999987531 11 1111111 111111211 22222223456677899999999
Q ss_pred HHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEccCchhHhh-cCEEEEEECCEEEEecChhHHh
Q 001438 528 RIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELI 606 (1077)
Q Consensus 528 ri~lARal~~~p~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~ 606 (1077)
|++||||++.+|++|||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+.. ||++++|++|++++.|+++++.
T Consensus 171 rv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~~~tiiivtH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 250 (267)
T PRK14235 171 RLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQNYTIVIVTHSMQQAARVSQRTAFFHLGNLVEVGDTEKMF 250 (267)
T ss_pred HHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhcCCeEEEEEcCHHHHHhhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999999999999999999988778899999999999865 9999999999999999999987
Q ss_pred cCCC
Q 001438 607 SNPN 610 (1077)
Q Consensus 607 ~~~~ 610 (1077)
.++.
T Consensus 251 ~~~~ 254 (267)
T PRK14235 251 TNPD 254 (267)
T ss_pred hCCC
Confidence 6533
|
|
| >PRK14259 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-41 Score=368.61 Aligned_cols=228 Identities=29% Similarity=0.512 Sum_probs=186.5
Q ss_pred ccEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccC-----CCccEEEECCeeCCC--CC
Q 001438 380 GHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYE-----PLSGEILLDGNNIKG--LD 452 (1077)
Q Consensus 380 ~~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~-----~~~G~i~~~g~~~~~--~~ 452 (1077)
..|+++|++++|++ ..+|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|+++.. .+
T Consensus 12 ~~l~i~nl~~~~~~---~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~~ 88 (269)
T PRK14259 12 IIISLQNVTISYGT---FEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVD 88 (269)
T ss_pred ceEEEEeEEEEECC---EEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccCC
Confidence 46999999999964 358999999999999999999999999999999999987 689999999999863 45
Q ss_pred HHHHhhheeEEccCCCcccccHHHHHhcCCCCCC-HHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHH
Q 001438 453 LKWLRQQIGLVNQEPALFATTIRENILYGKDDAT-MEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAI 531 (1077)
Q Consensus 453 ~~~~r~~i~~v~Q~~~lf~~ti~~ni~~~~~~~~-~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~l 531 (1077)
..++|++++|+||++.+|+.|++||+.++..... ..+..+. .....+.+ .+..++++.......+||||||||++|
T Consensus 89 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~--~~~~l~~~-~l~~~l~~~~~~~~~~LS~G~~qrl~l 165 (269)
T PRK14259 89 PVEVRRRIGMVFQQPNPFPKSIYENIAFGARINGYTGDMDEL--VERSLRKA-AVWDECKDKLNESGYSLSGGQQQRLCI 165 (269)
T ss_pred HHHHhhceEEEccCCccchhhHHHHHhhhhhhcCCcHHHHHH--HHHHHHHh-CCcchhhhhhCCCcccCCHHHHHHHHH
Confidence 6677889999999999998899999987642111 1111111 11111211 122233445566778999999999999
Q ss_pred HHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEccCchhHhh-cCEEEEEEC-----------CEEEEe
Q 001438 532 SRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRN-ADVIAVVQG-----------RKIVKT 599 (1077)
Q Consensus 532 ARal~~~p~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~vtH~~~~~~~-~d~i~~l~~-----------G~i~~~ 599 (1077)
|||++.+|++|||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+.. ||++++|++ |++++.
T Consensus 166 aral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~~~~~~~~~g~~g~~~~~ 245 (269)
T PRK14259 166 ARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKKNFTIVIVTHNMQQAVRVSDMTAFFNAEEVEGGSGGKVGYLVEF 245 (269)
T ss_pred HHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeccccccccccccceEEEe
Confidence 99999999999999999999999999999999988778999999999998865 999999996 679999
Q ss_pred cChhHHhcCCCchH
Q 001438 600 GSHEELISNPNSAY 613 (1077)
Q Consensus 600 g~~~~l~~~~~~~~ 613 (1077)
|+++++..++...|
T Consensus 246 ~~~~~~~~~~~~~~ 259 (269)
T PRK14259 246 NETKKIFNSPKQKA 259 (269)
T ss_pred CCHHHHHhCcCChH
Confidence 99999987544333
|
|
| >PRK10070 glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-41 Score=385.68 Aligned_cols=210 Identities=35% Similarity=0.538 Sum_probs=174.3
Q ss_pred ccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHHH----hhheeEEccCCCcccc-
Q 001438 398 AIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWL----RQQIGLVNQEPALFAT- 472 (1077)
Q Consensus 398 ~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~----r~~i~~v~Q~~~lf~~- 472 (1077)
.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++.+.+...+ |++++|++|++.+|+.
T Consensus 42 ~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~~ 121 (400)
T PRK10070 42 LGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHM 121 (400)
T ss_pred EEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCCC
Confidence 37999999999999999999999999999999999999999999999999988776543 3579999999999975
Q ss_pred cHHHHHhcCCCC--CCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHHhccCCCEEEEeCcCCC
Q 001438 473 TIRENILYGKDD--ATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSA 550 (1077)
Q Consensus 473 ti~~ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~~~p~illlDEpts~ 550 (1077)
|++||+.++... ...++..+ +..++ ++.+ |++........+||||||||++|||||+.+|++|||||||++
T Consensus 122 Tv~enl~~~~~~~~~~~~~~~~--~~~e~---L~~~--gL~~~~~~~~~~LSgGq~QRv~LArAL~~~P~iLLLDEPts~ 194 (400)
T PRK10070 122 TVLDNTAFGMELAGINAEERRE--KALDA---LRQV--GLENYAHSYPDELSGGMRQRVGLARALAINPDILLMDEAFSA 194 (400)
T ss_pred CHHHHHHHHHHhcCCCHHHHHH--HHHHH---HHHc--CCChhhhcCcccCCHHHHHHHHHHHHHhcCCCEEEEECCCcc
Confidence 999999886421 12222111 11112 2222 333445566779999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHh--CCCeEEEEccCchhHhh-cCEEEEEECCEEEEecChhHHhcCCCchHH
Q 001438 551 LDAESENSVQEALDRVM--VGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELISNPNSAYA 614 (1077)
Q Consensus 551 lD~~~~~~i~~~l~~~~--~~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~ 614 (1077)
||+.+++.+++.|.++. .++|+|++||+++.+.. ||+|++|++|++++.|+++++..++...|.
T Consensus 195 LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~~~~~~~~Dri~vL~~G~i~~~g~~~~l~~~~~~~~v 261 (400)
T PRK10070 195 LDPLIRTEMQDELVKLQAKHQRTIVFISHDLDEAMRIGDRIAIMQNGEVVQVGTPDEILNNPANDYV 261 (400)
T ss_pred CCHHHHHHHHHHHHHHHHHCCCeEEEEECCHHHHHHhCCEEEEEECCEEEecCCHHHHHhCcccHHH
Confidence 99999999999998874 48999999999998754 999999999999999999999876554443
|
|
| >PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-41 Score=379.90 Aligned_cols=232 Identities=22% Similarity=0.408 Sum_probs=190.8
Q ss_pred cEEEEeEEEEcCCCC-CcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCC---ccEEEECCeeCCCCCHHHH
Q 001438 381 HIEFKDVSFCYPSRP-DVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPL---SGEILLDGNNIKGLDLKWL 456 (1077)
Q Consensus 381 ~i~~~~v~~~y~~~~-~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~---~G~i~~~g~~~~~~~~~~~ 456 (1077)
.++++|+++.|+... ...+++|+||+|++||+++|+|+||||||||+++|+|+++|. +|+|.++|+++..++.+++
T Consensus 12 ~L~i~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~~~~ 91 (330)
T PRK09473 12 LLDVKDLRVTFSTPDGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEKEL 91 (330)
T ss_pred eEEEeCeEEEEecCCCCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCHHHH
Confidence 589999999996432 246899999999999999999999999999999999999996 9999999999998887665
Q ss_pred h----hheeEEccCC--Ccccc-cHHHHHhcCC---CCCCHHHH-HHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHH
Q 001438 457 R----QQIGLVNQEP--ALFAT-TIRENILYGK---DDATMEEI-TRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQ 525 (1077)
Q Consensus 457 r----~~i~~v~Q~~--~lf~~-ti~~ni~~~~---~~~~~~~~-~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq 525 (1077)
+ ++|+||+|+| .+++. |+.+|+.... ...+.++. .++. ++.+.+ .++++. ..++..+.+|||||
T Consensus 92 ~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~~~~~~~~~~~~~---~~L~~v-gL~~~~-~~~~~~p~~LSgG~ 166 (330)
T PRK09473 92 NKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKGMSKAEAFEESV---RMLDAV-KMPEAR-KRMKMYPHEFSGGM 166 (330)
T ss_pred HHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHH---HHHHHc-CCCChH-HHhcCCcccCCHHH
Confidence 3 4799999999 45553 8888775321 11222222 2222 222322 455543 34677889999999
Q ss_pred HHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCeEEEEccCchhHhh-cCEEEEEECCEEEEecCh
Q 001438 526 KQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMV--GRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSH 602 (1077)
Q Consensus 526 kqri~lARal~~~p~illlDEpts~lD~~~~~~i~~~l~~~~~--~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~ 602 (1077)
|||++|||||+.+|++||+||||++||..++..+.+.|+++.+ +.|+|+|||+++.+.. ||+|+||++|+|+|.|++
T Consensus 167 ~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~~Dri~vm~~G~ive~g~~ 246 (330)
T PRK09473 167 RQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLGVVAGICDKVLVMYAGRTMEYGNA 246 (330)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEECCH
Confidence 9999999999999999999999999999999999999988753 8899999999999875 999999999999999999
Q ss_pred hHHhcCCCchHHHHH
Q 001438 603 EELISNPNSAYAALV 617 (1077)
Q Consensus 603 ~~l~~~~~~~~~~~~ 617 (1077)
+++.+++...|.+..
T Consensus 247 ~~i~~~p~~pyt~~l 261 (330)
T PRK09473 247 RDVFYQPSHPYSIGL 261 (330)
T ss_pred HHHHhCCCCHHHHHH
Confidence 999988888887643
|
|
| >PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-41 Score=371.76 Aligned_cols=220 Identities=30% Similarity=0.517 Sum_probs=184.7
Q ss_pred cEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHHHhhhe
Q 001438 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQI 460 (1077)
Q Consensus 381 ~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i 460 (1077)
.++++|++++|++. .+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+...+++.|
T Consensus 5 ~l~~~~l~~~~~~~-~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~~~~~~~~~i 83 (279)
T PRK13635 5 IIRVEHISFRYPDA-ATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVRRQV 83 (279)
T ss_pred eEEEEEEEEEeCCC-CccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHhhhe
Confidence 48999999999642 24599999999999999999999999999999999999999999999999999888777788899
Q ss_pred eEEccCC--CcccccHHHHHhcCCCC--CCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHHhc
Q 001438 461 GLVNQEP--ALFATTIRENILYGKDD--ATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIV 536 (1077)
Q Consensus 461 ~~v~Q~~--~lf~~ti~~ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~ 536 (1077)
+|++|+| .+++.|++|||.++... ...++..+. ...+.+.+ |+...+.....+||||||||++||||++
T Consensus 84 ~~~~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~--~~~~l~~~-----gL~~~~~~~~~~LS~G~~qrv~laral~ 156 (279)
T PRK13635 84 GMVFQNPDNQFVGATVQDDVAFGLENIGVPREEMVER--VDQALRQV-----GMEDFLNREPHRLSGGQKQRVAIAGVLA 156 (279)
T ss_pred EEEEeCHHHhcccccHHHHHhhhHhhCCCCHHHHHHH--HHHHHHHc-----CChhhhhCCcccCCHHHHHHHHHHHHHH
Confidence 9999998 35567999999886421 122222111 11111111 2333455566799999999999999999
Q ss_pred cCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCeEEEEccCchhHhhcCEEEEEECCEEEEecChhHHhcC
Q 001438 537 KNPSILLLDEATSALDAESENSVQEALDRVMV--GRTTVVVAHRLSTIRNADVIAVVQGRKIVKTGSHEELISN 608 (1077)
Q Consensus 537 ~~p~illlDEpts~lD~~~~~~i~~~l~~~~~--~~t~i~vtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~ 608 (1077)
.+|++|||||||++||+.+.+.+.+.|+++.+ ++|+|++||+++.+..||+|++|++|++++.|+++++...
T Consensus 157 ~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 230 (279)
T PRK13635 157 LQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLDEAAQADRVIVMNKGEILEEGTPEEIFKS 230 (279)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHhcC
Confidence 99999999999999999999999999998753 7999999999999888999999999999999999988754
|
|
| >cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-41 Score=365.74 Aligned_cols=216 Identities=28% Similarity=0.463 Sum_probs=181.5
Q ss_pred EEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHHH-hhhe
Q 001438 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWL-RQQI 460 (1077)
Q Consensus 382 i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~-r~~i 460 (1077)
++++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+.... |+.+
T Consensus 1 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i 77 (232)
T cd03218 1 LRAENLSKRYGK---RKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARLGI 77 (232)
T ss_pred CeEEEEEEEeCC---EEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccCCHhHHHhccE
Confidence 478999999963 358999999999999999999999999999999999999999999999999887765543 5679
Q ss_pred eEEccCCCcccc-cHHHHHhcCCCC--CCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHHhcc
Q 001438 461 GLVNQEPALFAT-TIRENILYGKDD--ATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVK 537 (1077)
Q Consensus 461 ~~v~Q~~~lf~~-ti~~ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~~ 537 (1077)
+|++|++.+|++ |++||+.++.+. ...++..+ + ..+.++.+ |++........+||||||||++||||++.
T Consensus 78 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~--~---~~~~l~~~--~l~~~~~~~~~~LS~G~~qrl~la~al~~ 150 (232)
T cd03218 78 GYLPQEASIFRKLTVEENILAVLEIRGLSKKEREE--K---LEELLEEF--HITHLRKSKASSLSGGERRRVEIARALAT 150 (232)
T ss_pred EEecCCccccccCcHHHHHHHHHHhcCCCHHHHHH--H---HHHHHHHc--CChhhhhCChhhCCHHHHHHHHHHHHHhc
Confidence 999999999987 999999875321 11111111 1 11223333 44555667778999999999999999999
Q ss_pred CCCEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCeEEEEccCchhHhh-cCEEEEEECCEEEEecChhHHhc
Q 001438 538 NPSILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELIS 607 (1077)
Q Consensus 538 ~p~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~ 607 (1077)
+|++|||||||++||+.+.+.+.+.|+++. +++|+|++||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 151 ~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 222 (232)
T cd03218 151 NPKFLLLDEPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNVRETLSITDRAYIIYEGKVLAEGTPEEIAA 222 (232)
T ss_pred CCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEEeCHHHhhc
Confidence 999999999999999999999999998875 48899999999987765 99999999999999999988764
|
The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. |
| >PRK14248 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-41 Score=369.29 Aligned_cols=227 Identities=30% Similarity=0.475 Sum_probs=184.1
Q ss_pred ccEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccC-----CCccEEEECCeeCCC--CC
Q 001438 380 GHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYE-----PLSGEILLDGNNIKG--LD 452 (1077)
Q Consensus 380 ~~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~-----~~~G~i~~~g~~~~~--~~ 452 (1077)
..++++|++++|++ ..+|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|+++.. .+
T Consensus 20 ~~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~ 96 (268)
T PRK14248 20 HILEVKDLSIYYGE---KRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNIN 96 (268)
T ss_pred ceEEEEEEEEEeCC---ceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEccccccc
Confidence 35999999999963 358999999999999999999999999999999999864 799999999999865 33
Q ss_pred HHHHhhheeEEccCCCcccccHHHHHhcCCCCC---CHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHH
Q 001438 453 LKWLRQQIGLVNQEPALFATTIRENILYGKDDA---TMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRI 529 (1077)
Q Consensus 453 ~~~~r~~i~~v~Q~~~lf~~ti~~ni~~~~~~~---~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri 529 (1077)
...++++++|++|++.+|++|++||+.++.... ......+. .....+.. .+..+.....+..+.+||||||||+
T Consensus 97 ~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~--~~~~l~~~-~l~~~~~~~~~~~~~~LSgGq~qrl 173 (268)
T PRK14248 97 VVNLRREIGMVFQKPNPFPKSIYNNITHALKYAGERRKSVLDEI--VEESLTKA-ALWDEVKDRLHSSALSLSGGQQQRL 173 (268)
T ss_pred HHHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHH--HHHHHHHc-CCCcchHHHHhcCcccCCHHHHHHH
Confidence 456778899999999999999999998753211 11111111 11111111 1211222345667789999999999
Q ss_pred HHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEccCchhHh-hcCEEEEEECCEEEEecChhHHhcC
Q 001438 530 AISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIR-NADVIAVVQGRKIVKTGSHEELISN 608 (1077)
Q Consensus 530 ~lARal~~~p~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~vtH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~~ 608 (1077)
+||||++.+|+++||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+. .||+|++|++|++++.|+++++..+
T Consensus 174 ~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~ 253 (268)
T PRK14248 174 CIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKEEYSIIIVTHNMQQALRVSDRTAFFLNGDLVEYDQTEQIFTS 253 (268)
T ss_pred HHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhcCCEEEEEEeCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhC
Confidence 999999999999999999999999999999999998876789999999999876 4999999999999999999998765
Q ss_pred CCch
Q 001438 609 PNSA 612 (1077)
Q Consensus 609 ~~~~ 612 (1077)
+...
T Consensus 254 ~~~~ 257 (268)
T PRK14248 254 PKQQ 257 (268)
T ss_pred CCCh
Confidence 4433
|
|
| >PRK14267 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-41 Score=367.93 Aligned_cols=223 Identities=30% Similarity=0.468 Sum_probs=183.4
Q ss_pred cEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCC-----CccEEEECCeeCC--CCCH
Q 001438 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEP-----LSGEILLDGNNIK--GLDL 453 (1077)
Q Consensus 381 ~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~-----~~G~i~~~g~~~~--~~~~ 453 (1077)
.++++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++| ++|+|.++|+++. +.+.
T Consensus 4 ~l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~ 80 (253)
T PRK14267 4 AIETVNLRVYYGS---NHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDP 80 (253)
T ss_pred eEEEEeEEEEeCC---eeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccCh
Confidence 4899999999964 3589999999999999999999999999999999999987 4999999999987 4455
Q ss_pred HHHhhheeEEccCCCcccc-cHHHHHhcCCC--C--CCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHH
Q 001438 454 KWLRQQIGLVNQEPALFAT-TIRENILYGKD--D--ATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQR 528 (1077)
Q Consensus 454 ~~~r~~i~~v~Q~~~lf~~-ti~~ni~~~~~--~--~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqr 528 (1077)
..+|++++|++|++.+|+. |++||+.++.. . ...++..+. ...+.+.+ .+.............+||||||||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~--~~~~l~~~-~l~~~~~~~~~~~~~~LS~G~~qr 157 (253)
T PRK14267 81 IEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDER--VEWALKKA-ALWDEVKDRLNDYPSNLSGGQRQR 157 (253)
T ss_pred HHHhhceeEEecCCccCCCCcHHHHHHHHHHhcCccCCHHHHHHH--HHHHHHHc-CCccchhhhhccChhhCCHHHHHH
Confidence 6678899999999999976 99999987531 1 112221111 11122211 121122234556778999999999
Q ss_pred HHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEccCchhHhh-cCEEEEEECCEEEEecChhHHhc
Q 001438 529 IAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELIS 607 (1077)
Q Consensus 529 i~lARal~~~p~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~ 607 (1077)
++||||++++|+++||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 158 v~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 237 (253)
T PRK14267 158 LVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKKEYTIVLVTHSPAQAARVSDYVAFLYLGKLIEVGPTRKVFE 237 (253)
T ss_pred HHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhhCCEEEEEECCHHHHHhhCCEEEEEECCEEEEeCCHHHHHh
Confidence 99999999999999999999999999999999999988778999999999999765 99999999999999999999876
Q ss_pred CC
Q 001438 608 NP 609 (1077)
Q Consensus 608 ~~ 609 (1077)
++
T Consensus 238 ~~ 239 (253)
T PRK14267 238 NP 239 (253)
T ss_pred CC
Confidence 53
|
|
| >PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-41 Score=373.39 Aligned_cols=219 Identities=26% Similarity=0.506 Sum_probs=182.9
Q ss_pred cEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCC--CCCHHHHhh
Q 001438 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIK--GLDLKWLRQ 458 (1077)
Q Consensus 381 ~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~--~~~~~~~r~ 458 (1077)
.|+++|++++|++ +.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++. ..+...+|+
T Consensus 5 ~l~~~~l~~~~~~--~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~ 82 (283)
T PRK13636 5 ILKVEELNYNYSD--GTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLRE 82 (283)
T ss_pred eEEEEeEEEEeCC--CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEECCCCcchHHHHHh
Confidence 5899999999963 235999999999999999999999999999999999999999999999999985 334567888
Q ss_pred heeEEccCC--CcccccHHHHHhcCCCC--CCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHH
Q 001438 459 QIGLVNQEP--ALFATTIRENILYGKDD--ATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRA 534 (1077)
Q Consensus 459 ~i~~v~Q~~--~lf~~ti~~ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARa 534 (1077)
.++|+||+| .+++.|++||+.++... .+.++..+. ...+.+ .+ |+.......+.+||||||||++||||
T Consensus 83 ~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~--~~~~l~---~~--gL~~~~~~~~~~LS~G~~qrl~lara 155 (283)
T PRK13636 83 SVGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKR--VDNALK---RT--GIEHLKDKPTHCLSFGQKKRVAIAGV 155 (283)
T ss_pred hEEEEecCcchhhccccHHHHHHhHHHHcCCCHHHHHHH--HHHHHH---HC--CChhhhhCCcccCCHHHHHHHHHHHH
Confidence 999999998 56788999999875321 222222111 111212 11 33344556778999999999999999
Q ss_pred hccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCeEEEEccCchhHh-hcCEEEEEECCEEEEecChhHHhcC
Q 001438 535 IVKNPSILLLDEATSALDAESENSVQEALDRVMV--GRTTVVVAHRLSTIR-NADVIAVVQGRKIVKTGSHEELISN 608 (1077)
Q Consensus 535 l~~~p~illlDEpts~lD~~~~~~i~~~l~~~~~--~~t~i~vtH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~~ 608 (1077)
|+.+|++|||||||++||+.+...+.+.|+++.+ |+|+|++||+++.+. .||++++|++|++++.|+++++.+.
T Consensus 156 L~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~ 232 (283)
T PRK13636 156 LVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFAE 232 (283)
T ss_pred HHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 9999999999999999999999999999988753 899999999999986 5999999999999999999998764
|
|
| >PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-39 Score=391.74 Aligned_cols=387 Identities=15% Similarity=0.137 Sum_probs=308.0
Q ss_pred HHHHHhhcccchHHHHHHHHHHHHHhhHHhHHHHHHHHHHHhhccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001438 684 AIKLYSMVRPDWTYGVCGTICAIIAGAQMPLFALGVSQALVAYYMDWDTTQREVKKITILFCCAAVITVIVHAIEHLSFG 763 (1077)
Q Consensus 684 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 763 (1077)
..+++++.+|+++.+..++++.++..+..+..++.+..+++........ ......+...++++.++..++.+++.+...
T Consensus 10 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (588)
T PRK11174 10 TRWLKQQSKPAKRWLNLSILLGFLSGLLLIAQAWLLATILQALIIENIP-REALLPPFILLILLFVLRALLAWLRERVGF 88 (588)
T ss_pred hHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3457778889888888888888888888888888888888765321111 112222334455556667778888899999
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCccccccccCCchhHHHHHhhcHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 001438 764 IMGERLTLRVREKMFSAILSNEIGWFDEMDNSSSILASRLESDATLLRTIVVDRSTILIQNFGLVTASFVIAFILNWRIT 843 (1077)
Q Consensus 764 ~~~~~~~~~Lr~~l~~~llr~p~~FFD~~~~~~G~IlnR~s~D~~~i~~~l~~~l~~~~~~~~~~~~~i~i~~~~~w~l~ 843 (1077)
..+.++..++|.++|+++++.|.+||++ +++|++++|+++|++.+++.+...+..++..++.+++.++++++++|+++
T Consensus 89 ~~~~~~~~~lr~~~~~~ll~~~~~~~~~--~~~g~l~s~~~~dv~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~ 166 (588)
T PRK11174 89 KAGQHIRQQIRQQVLDKLQQLGPAWIQG--KPAGSWATLVLEQVEDMHDFYARYLPQMALAVLVPLLILIAVFPINWAAG 166 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCchhhcc--CCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999995 99999999999999999999999999999998899999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhHHHHHHHcchHHHHHhcchHHHHHHHHHHhhhhhHHHHHHHHHH
Q 001438 844 LVVVATYPLIISGHISEKLFFQGYGGNLSKAYLKANMLAAEAVSNIRTVAAFCSEDKVLELYSRELVEPSKRSFIRGQIA 923 (1077)
Q Consensus 844 l~~l~~~Pl~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Etl~Gi~tIrAf~~e~~~~~~f~~~~~~~~~~~~~~~~~~ 923 (1077)
+++++++|+.++......+..++..++.++...+.+..+.|.++|+++||+|++|+++.++|.+..++..+...+.....
T Consensus 167 l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (588)
T PRK11174 167 LILLGTAPLIPLFMALVGMGAADANRRNFLALARLSGHFLDRLRGLETLRLFNRGEAETESIRSASEDFRQRTMEVLRMA 246 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999988877777777777777888888899999999999999999999999999999999998888777766666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHH---------HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Q 001438 924 GIFYGISQFFIFSSYGLALWYGSVLMGKELASFKSV---------MKSFMVLIVTALAMGETLALVPDLLKGNQMAASVF 994 (1077)
Q Consensus 924 ~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~ 994 (1077)
+...++...+......++.++++... .|.+++|.+ +.+..+......|+..+......++++..+.+|+.
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~t~G~l~~~~~~~~~~~~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~ 325 (588)
T PRK11174 247 FLSSAVLEFFASISIALVAVYFGFSY-LGELNFGHYGTGVTLFAGFFVLILAPEFYQPLRDLGTFYHAKAQAVGAAESLV 325 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-hcccccccccccchHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666555555555545554443 266666543 11223333456788888888999999999999999
Q ss_pred HHHcCCCCccCCCCcccc-cccccEEEeeeeeeCCCCCcccccccceeeeeCCCEEEEECCCCCCHHHHHHHHhhccCCC
Q 001438 995 EVLDRKTQVIGDIGEELT-NVEGTIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPT 1073 (1077)
Q Consensus 995 ~~l~~~~~~~~~~~~~~~-~~~G~I~f~nVsf~Y~~~~~~~VLk~vsl~I~~GekVaIVGrTGsGKSTLi~lL~Rfyd~~ 1073 (1077)
++++.+++.+.....+.+ +..++|+|+||+|.|+++ .+||+|+||+|+|||++|||||||||||||+++|.|+| |+
T Consensus 326 ~~l~~~~~~~~~~~~~~~~~~~~~i~~~~vsf~~~~~--~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p~ 402 (588)
T PRK11174 326 TFLETPLAHPQQGEKELASNDPVTIEAEDLEILSPDG--KTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-PY 402 (588)
T ss_pred HHHcCCCcccCCCccccCCCCCceEEEEeeEEeccCC--CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CC
Confidence 999876542221111111 235689999999988643 45899999999999999999999999999999999999 99
Q ss_pred CCCC
Q 001438 1074 AGKA 1077 (1077)
Q Consensus 1074 ~G~i 1077 (1077)
+|+|
T Consensus 403 ~G~I 406 (588)
T PRK11174 403 QGSL 406 (588)
T ss_pred CcEE
Confidence 9986
|
|
| >PRK14274 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-41 Score=368.14 Aligned_cols=227 Identities=30% Similarity=0.500 Sum_probs=185.3
Q ss_pred cEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccC--C---CccEEEECCeeCCC--CCH
Q 001438 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYE--P---LSGEILLDGNNIKG--LDL 453 (1077)
Q Consensus 381 ~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~--~---~~G~i~~~g~~~~~--~~~ 453 (1077)
.|+++|+++.|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++ | ++|+|.++|+++.. .+.
T Consensus 12 ~l~i~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~~~ 88 (259)
T PRK14274 12 VYQINGMNLWYGQ---HHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVDL 88 (259)
T ss_pred eEEEeeEEEEECC---eeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccccCH
Confidence 5899999999974 358999999999999999999999999999999999997 3 59999999999864 345
Q ss_pred HHHhhheeEEccCCCcccccHHHHHhcCCCC---CCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHH
Q 001438 454 KWLRQQIGLVNQEPALFATTIRENILYGKDD---ATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIA 530 (1077)
Q Consensus 454 ~~~r~~i~~v~Q~~~lf~~ti~~ni~~~~~~---~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~ 530 (1077)
..+|+.++|+||++.+|+.|++||+.++... ...++..+.+ ....+.+ .+.+.+.+.....+.+||||||||++
T Consensus 89 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~--~~~l~~~-~l~~~~~~~l~~~~~~LS~Gq~qrv~ 165 (259)
T PRK14274 89 VELRKNIGMVFQKGNPFPQSIFDNVAYGPRIHGTKNKKKLQEIV--EKSLKDV-ALWDEVKDRLHTQALSLSGGQQQRLC 165 (259)
T ss_pred HHHhhceEEEecCCcccccCHHHHHHhHHHhcCCCCHHHHHHHH--HHHHHHc-CCchhhhhhhhCCcccCCHHHHHHHH
Confidence 5678889999999999989999999875321 1122221111 1111111 12222223456677899999999999
Q ss_pred HHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEccCchhHhh-cCEEEEEECCEEEEecChhHHhcCC
Q 001438 531 ISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELISNP 609 (1077)
Q Consensus 531 lARal~~~p~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~ 609 (1077)
||||++.+|+++||||||++||+.+...+.+.|+++.+++|+|++||+++.+.. ||++++|++|++++.|+++++..++
T Consensus 166 laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~ 245 (259)
T PRK14274 166 IARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKEKYTIVIVTHNMQQAARVSDQTAFFYMGELVECNDTNKMFSNP 245 (259)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEECCHHHHhhCC
Confidence 999999999999999999999999999999999998778999999999999865 9999999999999999999987654
Q ss_pred CchH
Q 001438 610 NSAY 613 (1077)
Q Consensus 610 ~~~~ 613 (1077)
...|
T Consensus 246 ~~~~ 249 (259)
T PRK14274 246 DDQR 249 (259)
T ss_pred CCHH
Confidence 4433
|
|
| >cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-41 Score=361.63 Aligned_cols=211 Identities=26% Similarity=0.470 Sum_probs=175.1
Q ss_pred EEEEeEEEEcCCCCC-cccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHHHhhhe
Q 001438 382 IEFKDVSFCYPSRPD-VAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQI 460 (1077)
Q Consensus 382 i~~~~v~~~y~~~~~-~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i 460 (1077)
++++|++++|++... .++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++.. ...++|+++
T Consensus 2 l~~~~v~~~~~~~~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~-~~~~~~~~i 80 (218)
T cd03266 2 ITADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVK-EPAEARRRL 80 (218)
T ss_pred eEEEEEEEecCCCCccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEccc-CHHHHHhhE
Confidence 689999999975311 259999999999999999999999999999999999999999999999999875 345678899
Q ss_pred eEEccCCCcccc-cHHHHHhcCCC--CCCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHHhcc
Q 001438 461 GLVNQEPALFAT-TIRENILYGKD--DATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVK 537 (1077)
Q Consensus 461 ~~v~Q~~~lf~~-ti~~ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~~ 537 (1077)
+|+||++.+|+. |++||+.+... ....++..+ +.. +.++.+ |++........+||||||||++||||++.
T Consensus 81 ~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~--~~~---~~l~~~--~l~~~~~~~~~~LS~G~~qrv~laral~~ 153 (218)
T cd03266 81 GFVSDSTGLYDRLTARENLEYFAGLYGLKGDELTA--RLE---ELADRL--GMEELLDRRVGGFSTGMRQKVAIARALVH 153 (218)
T ss_pred EEecCCcccCcCCCHHHHHHHHHHHcCCCHHHHHH--HHH---HHHHHc--CCHHHHhhhhhhcCHHHHHHHHHHHHHhc
Confidence 999999999986 99999976421 112222111 111 122222 44455566778999999999999999999
Q ss_pred CCCEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCeEEEEccCchhHhh-cCEEEEEECCEEEEec
Q 001438 538 NPSILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTG 600 (1077)
Q Consensus 538 ~p~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~g 600 (1077)
+|+++||||||++||+.+.+.+.+.|+++. +++|+|++||+++.+.. ||++++|++|++++.|
T Consensus 154 ~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~i~~~~ 218 (218)
T cd03266 154 DPPVLLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHIMQEVERLCDRVVVLHRGRVVYEG 218 (218)
T ss_pred CCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhcCEEEEEECCEEeecC
Confidence 999999999999999999999999998874 58999999999998765 9999999999998764
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein. |
| >TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-41 Score=381.92 Aligned_cols=212 Identities=30% Similarity=0.493 Sum_probs=173.1
Q ss_pred cccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCe----eCCCCCHHHH---h-hheeEEccCCC
Q 001438 397 VAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGN----NIKGLDLKWL---R-QQIGLVNQEPA 468 (1077)
Q Consensus 397 ~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~----~~~~~~~~~~---r-~~i~~v~Q~~~ 468 (1077)
..+++|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+ ++...+...+ | ++++||+|++.
T Consensus 37 ~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vfQ~~~ 116 (382)
T TIGR03415 37 VVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMVFQKFA 116 (382)
T ss_pred EEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEecccccccCCHHHHHHHhcCCEEEEECCCc
Confidence 35799999999999999999999999999999999999999999999997 5666665443 3 57999999999
Q ss_pred ccc-ccHHHHHhcCCCC--CCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHHhccCCCEEEEe
Q 001438 469 LFA-TTIRENILYGKDD--ATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLD 545 (1077)
Q Consensus 469 lf~-~ti~~ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~~~p~illlD 545 (1077)
+|+ .|++||+.++... ...++..+ +..++.+.+ |++........+||||||||++|||||+.+|+|||||
T Consensus 117 l~p~~Tv~eNi~~~~~~~g~~~~~~~~--~a~e~le~v-----gL~~~~~~~~~~LSgGq~QRV~LARALa~~P~ILLlD 189 (382)
T TIGR03415 117 LMPWLTVEENVAFGLEMQGMPEAERRK--RVDEQLELV-----GLAQWADKKPGELSGGMQQRVGLARAFAMDADILLMD 189 (382)
T ss_pred CCCCCcHHHHHHHHHHhcCCCHHHHHH--HHHHHHHHc-----CCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEE
Confidence 998 5999999987421 12221111 111121211 2333344566789999999999999999999999999
Q ss_pred CcCCCCCHHHHHHHHHHHHHHhC--CCeEEEEccCchhHh-hcCEEEEEECCEEEEecChhHHhcCCCchHHH
Q 001438 546 EATSALDAESENSVQEALDRVMV--GRTTVVVAHRLSTIR-NADVIAVVQGRKIVKTGSHEELISNPNSAYAA 615 (1077)
Q Consensus 546 Epts~lD~~~~~~i~~~l~~~~~--~~t~i~vtH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~ 615 (1077)
||||+||+.+++.+++.|.++.+ ++|+|+|||+++.+. .||+|++|++|++++.|+++|++.++...|.+
T Consensus 190 EPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~e~~~l~DrI~vl~~G~iv~~g~~~ei~~~p~~~~~~ 262 (382)
T TIGR03415 190 EPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDLDEALKIGNRIAIMEGGRIIQHGTPEEIVLNPANDYVA 262 (382)
T ss_pred CCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHhhCcchHHHH
Confidence 99999999999999999988753 899999999999875 59999999999999999999998765555543
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines. |
| >PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-41 Score=363.42 Aligned_cols=214 Identities=29% Similarity=0.465 Sum_probs=177.5
Q ss_pred cEEEEeEEEEcCCCC-CcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHH---H
Q 001438 381 HIEFKDVSFCYPSRP-DVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKW---L 456 (1077)
Q Consensus 381 ~i~~~~v~~~y~~~~-~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~---~ 456 (1077)
.++++|++++|++.. ..++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++...+... +
T Consensus 5 ~l~~~~l~~~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~ 84 (233)
T PRK11629 5 LLQCDNLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAEL 84 (233)
T ss_pred eEEEEeEEEEcCCCCcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHHHHHHH
Confidence 489999999997432 146899999999999999999999999999999999999999999999999998877543 3
Q ss_pred h-hheeEEccCCCcccc-cHHHHHhcCCC--CCCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHH
Q 001438 457 R-QQIGLVNQEPALFAT-TIRENILYGKD--DATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAIS 532 (1077)
Q Consensus 457 r-~~i~~v~Q~~~lf~~-ti~~ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lA 532 (1077)
| +.++|++|++.+|+. |++||+.++.. ....++..+ +.... ++.+ |++........+||||||||++||
T Consensus 85 ~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~--~~~~~---l~~~--gl~~~~~~~~~~LSgG~~qrl~la 157 (233)
T PRK11629 85 RNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEINS--RALEM---LAAV--GLEHRANHRPSELSGGERQRVAIA 157 (233)
T ss_pred HhccEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHH--HHHHH---HHHc--CCchhhhCChhhCCHHHHHHHHHH
Confidence 3 579999999999876 99999987421 112222111 11112 2222 344445667789999999999999
Q ss_pred HHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh--CCCeEEEEccCchhHhhcCEEEEEECCEEEEecC
Q 001438 533 RAIVKNPSILLLDEATSALDAESENSVQEALDRVM--VGRTTVVVAHRLSTIRNADVIAVVQGRKIVKTGS 601 (1077)
Q Consensus 533 Ral~~~p~illlDEpts~lD~~~~~~i~~~l~~~~--~~~t~i~vtH~~~~~~~~d~i~~l~~G~i~~~g~ 601 (1077)
||++.+|+++||||||++||+.+.+.+.+.|+++. +|+|+|++||+++.+..+|++++|++|++++.|+
T Consensus 158 ~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~~~~~~~~~~~l~~G~i~~~~~ 228 (233)
T PRK11629 158 RALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQLAKRMSRQLEMRDGRLTAELS 228 (233)
T ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhhCEEEEEECCEEEEEec
Confidence 99999999999999999999999999999998874 4899999999999998889999999999998875
|
|
| >COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-38 Score=387.13 Aligned_cols=381 Identities=23% Similarity=0.360 Sum_probs=324.6
Q ss_pred HHHhhcccchHHHHHHHHHHHHHhhHHhHHHHHHHHHHHhhccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001438 686 KLYSMVRPDWTYGVCGTICAIIAGAQMPLFALGVSQALVAYYMDWDTTQREVKKITILFCCAAVITVIVHAIEHLSFGIM 765 (1077)
Q Consensus 686 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 765 (1077)
+++.+.+ ++ .+..+.++.++........++.....++..+.. ......+..+++++.++..++.++..+...+.
T Consensus 6 ~l~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~----~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 79 (567)
T COG1132 6 RLLKYLK-YK-LLLLAILLLLLSALLSLLLPLLIGRIIDALLAD----LGELLELLLLLLLLALLGGVLRALQSYLGSRL 79 (567)
T ss_pred HHHHHHH-HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444 45 556666666666666666677777777666521 12223334455555666777778888888888
Q ss_pred HHHHHHHHHHHHHHHHHcCCccccccccCCchhHHHHHhhcHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 001438 766 GERLTLRVREKMFSAILSNEIGWFDEMDNSSSILASRLESDATLLRTIVVDRSTILIQNFGLVTASFVIAFILNWRITLV 845 (1077)
Q Consensus 766 ~~~~~~~Lr~~l~~~llr~p~~FFD~~~~~~G~IlnR~s~D~~~i~~~l~~~l~~~~~~~~~~~~~i~i~~~~~w~l~l~ 845 (1077)
+.+...++|.++|+++++.|++|||+ +++|.+++|+++|++.++..+......+...++.+++.+++++..+|+++++
T Consensus 80 ~~~~~~~lr~~~~~~l~~~~~~~~~~--~~~g~l~~~~t~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~ 157 (567)
T COG1132 80 GQKIVADLRRDLFEKLLRLPLSFFDK--AKSGDLISRLTNDVEAVSNLVSTVLVLVFTSILLLIGSLVLLFSLSWRLALI 157 (567)
T ss_pred HHHHHHHHHHHHHHHHHhCCHHHhCc--CCcchHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 89999999999999999999999995 9999999999999999999999986666667899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhHHHHHHHcchHHHHHhcchHHHHHHHHHHhhhhhHHHHHHHHHHHH
Q 001438 846 VVATYPLIISGHISEKLFFQGYGGNLSKAYLKANMLAAEAVSNIRTVAAFCSEDKVLELYSRELVEPSKRSFIRGQIAGI 925 (1077)
Q Consensus 846 ~l~~~Pl~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Etl~Gi~tIrAf~~e~~~~~~f~~~~~~~~~~~~~~~~~~~~ 925 (1077)
++...|++.+...+..++.++..+..++...+.+..+.|+++|+++||+|+.|+...++|.+..+...+...+.....+.
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (567)
T COG1132 158 LLLILPLLALVLSLLARKSRKLSRRVREALGELNARLLESLSGIRVIKAFGAEDRELKRFEEANEELRRANLRASRLEAL 237 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999988888887778888888889999999999999999999999999999999999998888888887888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHcCCCCccC
Q 001438 926 FYGISQFFIFSSYGLALWYGSVLMGKELASFKSVMKSFMVLIVTALAMGETLALVPDLLKGNQMAASVFEVLDRKTQVIG 1005 (1077)
Q Consensus 926 ~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~l~~~~~~~~ 1005 (1077)
..+....+......+++++|+.++..+.++++.+..++.+......++..+......++.+..+++|++++++.++++.+
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~ 317 (567)
T COG1132 238 LAPLMLLLSSLGTVLVLALGGFLVLSGSLTVGALAAFILYLLRLLTPILQLGEVVSLLQRASAAAERLFELLDEEPEVED 317 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccC
Confidence 88899999999999999999999999999999999999999999999999999999999999999999999998776543
Q ss_pred CCCcccccccccEEEeeeeeeCCCCCcccccccceeeeeCCCEEEEECCCCCCHHHHHHHHhhccCCCCCCC
Q 001438 1006 DIGEELTNVEGTIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKA 1077 (1077)
Q Consensus 1006 ~~~~~~~~~~G~I~f~nVsf~Y~~~~~~~VLk~vsl~I~~GekVaIVGrTGsGKSTLi~lL~Rfyd~~~G~i 1077 (1077)
.... .+...|+|+|+||+|+|++ +.+||+|+||+|+|||+|||||||||||||++++|+|||||++|+|
T Consensus 318 ~~~~-~~~~~~~I~f~~vsf~y~~--~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I 386 (567)
T COG1132 318 PPDP-LKDTIGSIEFENVSFSYPG--KKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEI 386 (567)
T ss_pred CCCC-CCCCCCeEEEEEEEEEcCC--CCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeE
Confidence 2221 3345689999999999975 3468999999999999999999999999999999999999999986
|
|
| >PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-41 Score=370.49 Aligned_cols=227 Identities=29% Similarity=0.480 Sum_probs=184.9
Q ss_pred cEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHH---HHh
Q 001438 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLK---WLR 457 (1077)
Q Consensus 381 ~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~---~~r 457 (1077)
.|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+.. .++
T Consensus 7 ~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~ 83 (269)
T PRK11831 7 LVDMRGVSFTRGN---RCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYTVR 83 (269)
T ss_pred eEEEeCeEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccChhhHHHHh
Confidence 5899999999963 3589999999999999999999999999999999999999999999999998776543 356
Q ss_pred hheeEEccCCCcccc-cHHHHHhcCCCC---CCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHH
Q 001438 458 QQIGLVNQEPALFAT-TIRENILYGKDD---ATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISR 533 (1077)
Q Consensus 458 ~~i~~v~Q~~~lf~~-ti~~ni~~~~~~---~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lAR 533 (1077)
++++|++|++.+|+. |++||+.++... .+.++... +.... ++.+ |+.........+||||||||++|||
T Consensus 84 ~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~--~~~~~---l~~~--gl~~~~~~~~~~LSgGq~qrv~lar 156 (269)
T PRK11831 84 KRMSMLFQSGALFTDMNVFDNVAYPLREHTQLPAPLLHS--TVMMK---LEAV--GLRGAAKLMPSELSGGMARRAALAR 156 (269)
T ss_pred hcEEEEecccccCCCCCHHHHHHHHHHHccCCCHHHHHH--HHHHH---HHHc--CChhhhhCChhhCCHHHHHHHHHHH
Confidence 789999999999986 999999865311 11111111 11112 2222 2333344566789999999999999
Q ss_pred HhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh--CCCeEEEEccCchhHhh-cCEEEEEECCEEEEecChhHHhcCCC
Q 001438 534 AIVKNPSILLLDEATSALDAESENSVQEALDRVM--VGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELISNPN 610 (1077)
Q Consensus 534 al~~~p~illlDEpts~lD~~~~~~i~~~l~~~~--~~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~~ 610 (1077)
|++.+|+++||||||++||+.+.+.+.+.|+++. +|+|+|++||+++.+.. ||+|++|++|++++.|+++++.+++.
T Consensus 157 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~~ 236 (269)
T PRK11831 157 AIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVPEVLSIADHAYIVADKKIVAHGSAQALQANPD 236 (269)
T ss_pred HHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhhCEEEEEECCEEEEeCCHHHHhcCCc
Confidence 9999999999999999999999999999999874 37999999999998865 99999999999999999999986543
Q ss_pred chHHHHH
Q 001438 611 SAYAALV 617 (1077)
Q Consensus 611 ~~~~~~~ 617 (1077)
..+..++
T Consensus 237 ~~~~~~~ 243 (269)
T PRK11831 237 PRVRQFL 243 (269)
T ss_pred HHHHHHH
Confidence 3344443
|
|
| >PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-41 Score=371.01 Aligned_cols=221 Identities=29% Similarity=0.514 Sum_probs=185.0
Q ss_pred cEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHHHhhhe
Q 001438 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQI 460 (1077)
Q Consensus 381 ~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i 460 (1077)
.++++|++++|++....++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|+++...+...+|+.+
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~i 83 (277)
T PRK13642 4 ILEVENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRRKI 83 (277)
T ss_pred eEEEEEEEEEcCCCCcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEECCcCCHHHHhcce
Confidence 48999999999743334589999999999999999999999999999999999999999999999999877777788899
Q ss_pred eEEccCCC--cccccHHHHHhcCCC--CCCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHHhc
Q 001438 461 GLVNQEPA--LFATTIRENILYGKD--DATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIV 536 (1077)
Q Consensus 461 ~~v~Q~~~--lf~~ti~~ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~ 536 (1077)
+|++|+|. ++..|+.|||.++.. ....++..+.+ ..+.+.+ |+.........+||||||||++||||++
T Consensus 84 ~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~--~~~l~~~-----~l~~~~~~~~~~LS~G~~qrv~lAraL~ 156 (277)
T PRK13642 84 GMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKRV--DEALLAV-----NMLDFKTREPARLSGGQKQRVAVAGIIA 156 (277)
T ss_pred EEEEECHHHhhccCCHHHHHHhhHHHcCCCHHHHHHHH--HHHHHHC-----CCHhHhhCCcccCCHHHHHHHHHHHHHH
Confidence 99999984 567799999987532 22333322211 1111111 2222344566789999999999999999
Q ss_pred cCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCeEEEEccCchhHhhcCEEEEEECCEEEEecChhHHhcC
Q 001438 537 KNPSILLLDEATSALDAESENSVQEALDRVMV--GRTTVVVAHRLSTIRNADVIAVVQGRKIVKTGSHEELISN 608 (1077)
Q Consensus 537 ~~p~illlDEpts~lD~~~~~~i~~~l~~~~~--~~t~i~vtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~ 608 (1077)
.+|+++||||||++||+.+.+.+.+.|+++.+ |+|+|++||+++.+..||+|++|++|++++.|+++++...
T Consensus 157 ~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 230 (277)
T PRK13642 157 LRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDEAASSDRILVMKAGEIIKEAAPSELFAT 230 (277)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 99999999999999999999999999988753 8999999999999888999999999999999999998764
|
|
| >PRK14240 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-41 Score=365.40 Aligned_cols=227 Identities=32% Similarity=0.563 Sum_probs=184.8
Q ss_pred ccEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCC-----CccEEEECCeeCCC--CC
Q 001438 380 GHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEP-----LSGEILLDGNNIKG--LD 452 (1077)
Q Consensus 380 ~~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~-----~~G~i~~~g~~~~~--~~ 452 (1077)
+.|+++|+++.|++ .++++|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|+++.. .+
T Consensus 2 ~~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~ 78 (250)
T PRK14240 2 GKISVKDLDLFYGD---FQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDID 78 (250)
T ss_pred CeEEEEEEEEEECC---ceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccc
Confidence 35899999999974 3589999999999999999999999999999999999763 69999999999864 34
Q ss_pred HHHHhhheeEEccCCCcccccHHHHHhcCCCC--C-CHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHH
Q 001438 453 LKWLRQQIGLVNQEPALFATTIRENILYGKDD--A-TMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRI 529 (1077)
Q Consensus 453 ~~~~r~~i~~v~Q~~~lf~~ti~~ni~~~~~~--~-~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri 529 (1077)
...+|+.++|++|++.+|+.|++||+.++... . ..++..+. .....+.. .+.+++.......+.+||||||||+
T Consensus 79 ~~~~~~~i~~~~q~~~~~~~t~~~ni~~~~~~~~~~~~~~~~~~--~~~~l~~~-~l~~~l~~~~~~~~~~LS~G~~qrv 155 (250)
T PRK14240 79 VNQLRKRVGMVFQQPNPFPMSIYDNVAYGPRTHGIKDKKKLDEI--VEKSLKGA-ALWDEVKDRLKKSALGLSGGQQQRL 155 (250)
T ss_pred hHHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCCHHHHHHH--HHHHHHHc-CCchhhHHHHhcCCCCCCHHHHHHH
Confidence 55678899999999999989999999876311 1 11111111 11111111 1222233445667789999999999
Q ss_pred HHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEccCchhHhh-cCEEEEEECCEEEEecChhHHhcC
Q 001438 530 AISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELISN 608 (1077)
Q Consensus 530 ~lARal~~~p~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 608 (1077)
+||||++.+|+++||||||++||+.+++.+.+.|+++.+++|+|++||+++.+.. ||++++|++|++++.|+++++..+
T Consensus 156 ~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~ 235 (250)
T PRK14240 156 CIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELKKDYTIVIVTHNMQQASRISDKTAFFLNGEIVEFGDTVDLFTN 235 (250)
T ss_pred HHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEEeCHHHHHhhCCEEEEEECCEEEEeCCHHHHHhC
Confidence 9999999999999999999999999999999999988778999999999998765 999999999999999999998765
Q ss_pred CCch
Q 001438 609 PNSA 612 (1077)
Q Consensus 609 ~~~~ 612 (1077)
+...
T Consensus 236 ~~~~ 239 (250)
T PRK14240 236 PKDK 239 (250)
T ss_pred CCCh
Confidence 4433
|
|
| >TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-38 Score=395.86 Aligned_cols=386 Identities=17% Similarity=0.251 Sum_probs=324.5
Q ss_pred HHHHhhcccchHHHHHHHHHHHHHhhHHhHHHHHHHHHHHhhccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001438 685 IKLYSMVRPDWTYGVCGTICAIIAGAQMPLFALGVSQALVAYYMDWDTTQREVKKITILFCCAAVITVIVHAIEHLSFGI 764 (1077)
Q Consensus 685 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 764 (1077)
..++.+.+++++.+...++++++..+...+.|+.+..+++....... ......+...++++.++..++.+++.++...
T Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~p~~~~~iiD~~~~~~~--~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (694)
T TIGR03375 136 HWFWSTLKESWPLYRDVLIASLLINLLALASPLFVMNVYDRVVPNQA--FETLWVLAIGVALAIVFDFVLKTLRSYFLDV 213 (694)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCc--HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555566677766666666666666667777777777776543211 1112223334444555677888899999999
Q ss_pred HHHHHHHHHHHHHHHHHHcCCccccccccCCchhHHHHHhhcHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 001438 765 MGERLTLRVREKMFSAILSNEIGWFDEMDNSSSILASRLESDATLLRTIVVDRSTILIQNFGLVTASFVIAFILNWRITL 844 (1077)
Q Consensus 765 ~~~~~~~~Lr~~l~~~llr~p~~FFD~~~~~~G~IlnR~s~D~~~i~~~l~~~l~~~~~~~~~~~~~i~i~~~~~w~l~l 844 (1077)
.+.++..++|.++|+|+++.|++| + .+++|++++|+ +|++.+++.+...+...+..+..+++.++++++++|++++
T Consensus 214 ~~~~~~~~l~~~~~~~ll~l~~~~-~--~~~~G~~~~r~-~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l 289 (694)
T TIGR03375 214 AGKKADLILSAKLFERVLGLRMEA-R--PASVGSFANQL-REFESVRDFFTSATLTALIDLPFALLFLLVIAIIGGPLVW 289 (694)
T ss_pred HHHHHHHHHHHHHHHHHhCCCccc-C--CCChhHHHHHH-HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 999999999999999999999998 5 38999999999 7999999999888888888888888888889999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhHHHHHHHcchHHHHHhcchHHHHHHHHHHhhhhhHHHHHHHHHHH
Q 001438 845 VVVATYPLIISGHISEKLFFQGYGGNLSKAYLKANMLAAEAVSNIRTVAAFCSEDKVLELYSRELVEPSKRSFIRGQIAG 924 (1077)
Q Consensus 845 ~~l~~~Pl~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Etl~Gi~tIrAf~~e~~~~~~f~~~~~~~~~~~~~~~~~~~ 924 (1077)
+.++.+|+.++...+..+++++..++..+...+..+.+.|+++|+++||+|+.|+.+.++|.+..++..+...+.....+
T Consensus 290 i~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (694)
T TIGR03375 290 VPLVAIPLILLPGLLLQRPLSRLAEESMRESAQRNAVLVESLSGLETIKALNAEGRFQRRWEQTVAALARSGLKSRFLSN 369 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999988888888888888888888888889999999999999999999999999999999999888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHcCCCCcc
Q 001438 925 IFYGISQFFIFSSYGLALWYGSVLMGKELASFKSVMKSFMVLIVTALAMGETLALVPDLLKGNQMAASVFEVLDRKTQVI 1004 (1077)
Q Consensus 925 ~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~l~~~~~~~ 1004 (1077)
....+.+.+..++..+++|+|+.++..|.+++|.++++..+......|+..+.....+++.+..+.+|+.++++.+++.+
T Consensus 370 ~~~~~~~~~~~~~~~~il~~g~~~v~~g~ls~G~l~a~~~~~~~~~~p~~~l~~~~~~~~~~~~~~~ri~~il~~~~e~~ 449 (694)
T TIGR03375 370 LATNFAQFIQQLVSVAIVVVGVYLISDGELTMGGLIACVMLSGRALAPLGQLAGLLTRYQQAKTALQSLDELMQLPVERP 449 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCC
Confidence 88888888888888889999999999999999999999999999999999999999999999999999999999876543
Q ss_pred CCCC-cccccccccEEEeeeeeeCCCCCcccccccceeeeeCCCEEEEECCCCCCHHHHHHHHhhccCCCCCCC
Q 001438 1005 GDIG-EELTNVEGTIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKA 1077 (1077)
Q Consensus 1005 ~~~~-~~~~~~~G~I~f~nVsf~Y~~~~~~~VLk~vsl~I~~GekVaIVGrTGsGKSTLi~lL~Rfyd~~~G~i 1077 (1077)
.... ...++.+|+|+|+||+|+||+. +.++|+|+||+|+|||+|||||+||||||||+++|.|+|+|++|+|
T Consensus 450 ~~~~~~~~~~~~~~I~~~~vsf~Y~~~-~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~~G~I 522 (694)
T TIGR03375 450 EGTRFLHRPRLQGEIEFRNVSFAYPGQ-ETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSV 522 (694)
T ss_pred CCCCCCCCCCccceEEEEEEEEEeCCC-CccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceE
Confidence 2211 1123356899999999999754 3468999999999999999999999999999999999999999975
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export. |
| >cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-41 Score=362.67 Aligned_cols=208 Identities=36% Similarity=0.486 Sum_probs=171.5
Q ss_pred EEEEeEEEEcCCCC-CcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHH----H
Q 001438 382 IEFKDVSFCYPSRP-DVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKW----L 456 (1077)
Q Consensus 382 i~~~~v~~~y~~~~-~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~----~ 456 (1077)
++++|++++|++.. ..++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+... .
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~ 80 (218)
T cd03255 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFR 80 (218)
T ss_pred CeEeeeEEEecCCCcceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHHHHHH
Confidence 47899999996421 136899999999999999999999999999999999999999999999999988766432 4
Q ss_pred hhheeEEccCCCcccc-cHHHHHhcCCCC--CCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHH
Q 001438 457 RQQIGLVNQEPALFAT-TIRENILYGKDD--ATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISR 533 (1077)
Q Consensus 457 r~~i~~v~Q~~~lf~~-ti~~ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lAR 533 (1077)
+++++|++|++.+|+. |++||+.++... ...++..+ + ..+.++.+ |++........+||||||||++|||
T Consensus 81 ~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~--~---~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~la~ 153 (218)
T cd03255 81 RRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKERRE--R---AEELLERV--GLGDRLNHYPSELSGGQQQRVAIAR 153 (218)
T ss_pred hhcEEEEeeccccCCCCcHHHHHHHHHhhcCCCHHHHHH--H---HHHHHHHc--CCchhhhcChhhcCHHHHHHHHHHH
Confidence 5689999999999986 999999876421 11111111 1 11222222 3444456677899999999999999
Q ss_pred HhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCeEEEEccCchhHhhcCEEEEEECCEE
Q 001438 534 AIVKNPSILLLDEATSALDAESENSVQEALDRVMV--GRTTVVVAHRLSTIRNADVIAVVQGRKI 596 (1077)
Q Consensus 534 al~~~p~illlDEpts~lD~~~~~~i~~~l~~~~~--~~t~i~vtH~~~~~~~~d~i~~l~~G~i 596 (1077)
|++.+|+++||||||++||+.+++.+.+.|+++.+ ++|+|++||+++.+..||++++|++|++
T Consensus 154 al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~d~v~~l~~G~i 218 (218)
T cd03255 154 ALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPELAEYADRIIELRDGKI 218 (218)
T ss_pred HHccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhcEEEEeeCCcC
Confidence 99999999999999999999999999999998754 8999999999998888999999999974
|
They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. |
| >PRK14249 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-41 Score=364.34 Aligned_cols=224 Identities=29% Similarity=0.530 Sum_probs=185.5
Q ss_pred cEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCC-----ccEEEECCeeCCCC--CH
Q 001438 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPL-----SGEILLDGNNIKGL--DL 453 (1077)
Q Consensus 381 ~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~-----~G~i~~~g~~~~~~--~~ 453 (1077)
.++++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|+ +|+|.++|.++... +.
T Consensus 4 ~l~~~~l~~~~~~---~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~ 80 (251)
T PRK14249 4 KIKIRGVNFFYHK---HQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLDV 80 (251)
T ss_pred eEEEEEEEEEECC---eeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccccccCh
Confidence 5899999999964 35899999999999999999999999999999999999997 69999999998643 34
Q ss_pred HHHhhheeEEccCCCcccccHHHHHhcCCCC--CC-HHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHH
Q 001438 454 KWLRQQIGLVNQEPALFATTIRENILYGKDD--AT-MEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIA 530 (1077)
Q Consensus 454 ~~~r~~i~~v~Q~~~lf~~ti~~ni~~~~~~--~~-~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~ 530 (1077)
..+|+.++|+||++.+|+.|++||+.++... .. .++..+.+. ...+.+ .+.++..+.....+.+||||||||++
T Consensus 81 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~--~~l~~~-~l~~~l~~~~~~~~~~LS~Gq~qrv~ 157 (251)
T PRK14249 81 VNLRKRVGMVFQQPNPFPKSIFDNVAFGPRMLGTTAQSRLDEVVE--KSLRQA-ALWDEVKDNLHKSGLALSGGQQQRLC 157 (251)
T ss_pred HHhhceEEEEecCCccCcCcHHHHHhhHHHhcCCChhhHHHHHHH--HHHHHh-CCchhhhhHhhCCcccCCHHHHHHHH
Confidence 5678899999999999999999999876321 11 111111111 111111 23223344566788899999999999
Q ss_pred HHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEccCchhHhh-cCEEEEEECCEEEEecChhHHhcCC
Q 001438 531 ISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELISNP 609 (1077)
Q Consensus 531 lARal~~~p~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~ 609 (1077)
||||++.+|+++||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+.. ||++++|++|++++.|+++++...+
T Consensus 158 laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tilivsh~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~ 237 (251)
T PRK14249 158 IARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELKQNYTIAIVTHNMQQAARASDWTGFLLTGDLVEYGRTGEIFSRP 237 (251)
T ss_pred HHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhCCEEEEEeCCeEEEeCCHHHHHhCC
Confidence 999999999999999999999999999999999888678999999999999876 8999999999999999999987654
Q ss_pred C
Q 001438 610 N 610 (1077)
Q Consensus 610 ~ 610 (1077)
.
T Consensus 238 ~ 238 (251)
T PRK14249 238 R 238 (251)
T ss_pred C
Confidence 3
|
|
| >cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-41 Score=360.74 Aligned_cols=213 Identities=25% Similarity=0.424 Sum_probs=175.1
Q ss_pred EEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHHHhhhee
Q 001438 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIG 461 (1077)
Q Consensus 382 i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 461 (1077)
|+++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++... ...++++++
T Consensus 1 i~~~~~~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~-~~~~~~~i~ 76 (220)
T cd03265 1 IEVENLVKKYGD---FEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVRE-PREVRRRIG 76 (220)
T ss_pred CEEEEEEEEECC---EEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCcC-hHHHhhcEE
Confidence 578999999964 3589999999999999999999999999999999999999999999999988653 356677899
Q ss_pred EEccCCCcccc-cHHHHHhcCCC--CCCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHHhccC
Q 001438 462 LVNQEPALFAT-TIRENILYGKD--DATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKN 538 (1077)
Q Consensus 462 ~v~Q~~~lf~~-ti~~ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~~~ 538 (1077)
|++|++.+++. |++||+.++.. ....++..+. .... ++.+ |++........+||||||||++||||++.+
T Consensus 77 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~--~~~~---l~~~--~l~~~~~~~~~~LS~G~~qr~~la~al~~~ 149 (220)
T cd03265 77 IVFQDLSVDDELTGWENLYIHARLYGVPGAERRER--IDEL---LDFV--GLLEAADRLVKTYSGGMRRRLEIARSLVHR 149 (220)
T ss_pred EecCCccccccCcHHHHHHHHHHHcCCCHHHHHHH--HHHH---HHHc--CCHHHhhCChhhCCHHHHHHHHHHHHHhcC
Confidence 99999998876 99999987421 1111111111 1111 2222 222333445668999999999999999999
Q ss_pred CCEEEEeCcCCCCCHHHHHHHHHHHHHHh-C-CCeEEEEccCchhHhh-cCEEEEEECCEEEEecChhHH
Q 001438 539 PSILLLDEATSALDAESENSVQEALDRVM-V-GRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEEL 605 (1077)
Q Consensus 539 p~illlDEpts~lD~~~~~~i~~~l~~~~-~-~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l 605 (1077)
|+++||||||++||+++.+.+.+.|+++. + ++|+|++||+++.+.. ||+|++|++|++++.|+++++
T Consensus 150 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 219 (220)
T cd03265 150 PEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYMEEAEQLCDRVAIIDHGRIIAEGTPEEL 219 (220)
T ss_pred CCEEEEcCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEeCChHHc
Confidence 99999999999999999999999998874 3 7899999999999865 999999999999999988764
|
In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14238 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-41 Score=367.69 Aligned_cols=228 Identities=26% Similarity=0.443 Sum_probs=186.2
Q ss_pred ccEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccC-----CCccEEEECCeeCCC--CC
Q 001438 380 GHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYE-----PLSGEILLDGNNIKG--LD 452 (1077)
Q Consensus 380 ~~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~-----~~~G~i~~~g~~~~~--~~ 452 (1077)
..++++|++++|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|+++.. .+
T Consensus 23 ~~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~ 99 (271)
T PRK14238 23 VVFDTQNLNLWYGE---DHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYS 99 (271)
T ss_pred eEEEEeeeEEEECC---cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEccccccc
Confidence 36999999999974 358999999999999999999999999999999999987 699999999999853 34
Q ss_pred HHHHhhheeEEccCCCcccccHHHHHhcCCC--CCCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHH
Q 001438 453 LKWLRQQIGLVNQEPALFATTIRENILYGKD--DATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIA 530 (1077)
Q Consensus 453 ~~~~r~~i~~v~Q~~~lf~~ti~~ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~ 530 (1077)
...++++++|+||++.+|+.|++||+.++.. ....++..+. ......+.. .+.+++.......+.+||||||||++
T Consensus 100 ~~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~-~~~~~l~~~-~~~~~l~~~~~~~~~~LSgGe~qrv~ 177 (271)
T PRK14238 100 VEELRTNVGMVFQKPNPFPKSIYDNVTYGPKIHGIKDKKTLDE-IVEKSLRGA-AIWDELKDRLHDNAYGLSGGQQQRLC 177 (271)
T ss_pred HHHHhhhEEEEecCCccccccHHHHHHHHHHhcCCCcHHHHHH-HHHHHHHHc-CCcchHHHHHhcCcccCCHHHHHHHH
Confidence 5567888999999999998999999987531 1111111110 111111111 11123444556778899999999999
Q ss_pred HHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEccCchhHhh-cCEEEEEECCEEEEecChhHHhcCC
Q 001438 531 ISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELISNP 609 (1077)
Q Consensus 531 lARal~~~p~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~ 609 (1077)
|||||+.+|+++||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+.. ||++++|++|++++.|+++++..++
T Consensus 178 laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~~g~~~~~~~~~ 257 (271)
T PRK14238 178 IARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKKDYSIIIVTHNMQQAARISDKTAFFLNGYVNEYDDTDKIFSNP 257 (271)
T ss_pred HHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHcCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEeCCHHHHHcCC
Confidence 999999999999999999999999999999999988778999999999999865 9999999999999999999997664
Q ss_pred Cch
Q 001438 610 NSA 612 (1077)
Q Consensus 610 ~~~ 612 (1077)
...
T Consensus 258 ~~~ 260 (271)
T PRK14238 258 SDK 260 (271)
T ss_pred CCH
Confidence 433
|
|
| >PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-41 Score=369.43 Aligned_cols=220 Identities=29% Similarity=0.555 Sum_probs=184.6
Q ss_pred cEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHHHhhhe
Q 001438 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQI 460 (1077)
Q Consensus 381 ~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i 460 (1077)
.++++|++++|++. ++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+...+|+++
T Consensus 7 ~l~~~nl~~~~~~~-~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i 85 (271)
T PRK13632 7 MIKVENVSFSYPNS-ENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEIRKKI 85 (271)
T ss_pred EEEEEeEEEEcCCC-CccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcCCHHHHhcce
Confidence 58999999999632 24689999999999999999999999999999999999999999999999999877777888899
Q ss_pred eEEccCCC--cccccHHHHHhcCCCC--CCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHHhc
Q 001438 461 GLVNQEPA--LFATTIRENILYGKDD--ATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIV 536 (1077)
Q Consensus 461 ~~v~Q~~~--lf~~ti~~ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~ 536 (1077)
+|++|+|. ++..|++||+.++... .+.++..+ ...++ ++.+ |++........+||||||||++||||++
T Consensus 86 ~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~--~~~~~---l~~~--~l~~~~~~~~~~LS~G~~qrl~laral~ 158 (271)
T PRK13632 86 GIIFQNPDNQFIGATVEDDIAFGLENKKVPPKKMKD--IIDDL---AKKV--GMEDYLDKEPQNLSGGQKQRVAIASVLA 158 (271)
T ss_pred EEEEeCHHHhcCcccHHHHHHhHHHHcCCCHHHHHH--HHHHH---HHHc--CCHHHhhCCcccCCHHHHHHHHHHHHHH
Confidence 99999984 4567999999875321 22222211 11112 2222 3444456677899999999999999999
Q ss_pred cCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh-C-CCeEEEEccCchhHhhcCEEEEEECCEEEEecChhHHhcC
Q 001438 537 KNPSILLLDEATSALDAESENSVQEALDRVM-V-GRTTVVVAHRLSTIRNADVIAVVQGRKIVKTGSHEELISN 608 (1077)
Q Consensus 537 ~~p~illlDEpts~lD~~~~~~i~~~l~~~~-~-~~t~i~vtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~ 608 (1077)
.+|++|||||||++||+.+.+.+.+.|+++. + ++|+|++||+++.+..||++++|++|++++.|+.+++..+
T Consensus 159 ~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 232 (271)
T PRK13632 159 LNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDEAILADKVIVFSEGKLIAQGKPKEILNN 232 (271)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechhHHhhCCEEEEEECCEEEEecCHHHHhcC
Confidence 9999999999999999999999999999875 3 5899999999998888999999999999999999888654
|
|
| >TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-38 Score=394.72 Aligned_cols=388 Identities=15% Similarity=0.211 Sum_probs=323.6
Q ss_pred HHHHHhhcccchHHHHHHHHHHHHHhhHHhHHHHHHHHHHHhhccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001438 684 AIKLYSMVRPDWTYGVCGTICAIIAGAQMPLFALGVSQALVAYYMDWDTTQREVKKITILFCCAAVITVIVHAIEHLSFG 763 (1077)
Q Consensus 684 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 763 (1077)
...++++.+++++.+...++++++......+.++.+..+++....... ......+.+.++++.++..++.+++.++..
T Consensus 127 ~~~~~~~~~~~~~~~~~~~~~s~~~~ll~l~~p~~~~~iid~v~~~~~--~~~l~~l~~~~~~~~~~~~~~~~l~~~~~~ 204 (694)
T TIGR01846 127 FSWFIPAIIRYRKQFREVLLISLALQLFALVTPLLFQVVIDKVLVHRG--LSTLSVLALAMLAVAIFEPALGGLRTYLFA 204 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555666666666666666666666677777777776543211 122233344555666667788899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCccccccccCCchhHHHHHhhcHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 001438 764 IMGERLTLRVREKMFSAILSNEIGWFDEMDNSSSILASRLESDATLLRTIVVDRSTILIQNFGLVTASFVIAFILNWRIT 843 (1077)
Q Consensus 764 ~~~~~~~~~Lr~~l~~~llr~p~~FFD~~~~~~G~IlnR~s~D~~~i~~~l~~~l~~~~~~~~~~~~~i~i~~~~~w~l~ 843 (1077)
..+.++..++|.++|+++++.|++||+. +++|++++|+ +|++.+++.+...+..++..++.+++.++++++++|+++
T Consensus 205 ~~~~~~~~~l~~~~~~~l~~l~~~~f~~--~~~g~~~~rl-~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~ 281 (694)
T TIGR01846 205 HLTSRIDVELGARLYRHLLGLPLGYFES--RRVGDTVARV-RELEQIRNFLTGSALTVVLDLLFVVVFLAVMFFYSPTLT 281 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHcCC--CCHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999995 9999999999 699999999888887777777777777888999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhHHHHHHHcchHHHHHhcchHHHHHHHHHHhhhhhHHHHHHHHHH
Q 001438 844 LVVVATYPLIISGHISEKLFFQGYGGNLSKAYLKANMLAAEAVSNIRTVAAFCSEDKVLELYSRELVEPSKRSFIRGQIA 923 (1077)
Q Consensus 844 l~~l~~~Pl~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Etl~Gi~tIrAf~~e~~~~~~f~~~~~~~~~~~~~~~~~~ 923 (1077)
+++++++|+.++...+..+.+++...+..+...+.++.+.|+++|++|||+|+.|+++.++|.+..++..+...+.....
T Consensus 282 li~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (694)
T TIGR01846 282 GVVIGSLVCYALLSVFVGPILRKRVEDKFERSAAATSFLVESVTGIETIKATATEPQFQNRWDRQLAAYVAASFRVTNLG 361 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcccCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999988877777777777777777788888899999999999999999999999999999999988888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHcCCCCc
Q 001438 924 GIFYGISQFFIFSSYGLALWYGSVLMGKELASFKSVMKSFMVLIVTALAMGETLALVPDLLKGNQMAASVFEVLDRKTQV 1003 (1077)
Q Consensus 924 ~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~l~~~~~~ 1003 (1077)
+......+.+..+..++++|+|+.++..|.+++|.++++.++......|+..+......++.+..+.+|+.++++.+++.
T Consensus 362 ~~~~~~~~~i~~~~~~~il~~g~~lv~~g~it~G~lia~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~ 441 (694)
T TIGR01846 362 NIAGQAIELIQKLTFAILLWFGAHLVIGGALSPGQLVAFNMLAGRVTQPVLRLAQLWQDFQQTGIALERLGDILNSPTEP 441 (694)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCc
Confidence 88888888888888889999999999999999999999999999999999999999999999999999999999876654
Q ss_pred cCCCCcccccccccEEEeeeeeeCCCCCcccccccceeeeeCCCEEEEECCCCCCHHHHHHHHhhccCCCCCCC
Q 001438 1004 IGDIGEELTNVEGTIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKA 1077 (1077)
Q Consensus 1004 ~~~~~~~~~~~~G~I~f~nVsf~Y~~~~~~~VLk~vsl~I~~GekVaIVGrTGsGKSTLi~lL~Rfyd~~~G~i 1077 (1077)
+.......+..+|.|+|+||+|+|+++ +.++|+|+||+|+|||++||||+||||||||+++|.|+|+|++|+|
T Consensus 442 ~~~~~~~~~~~~~~i~~~~vsf~y~~~-~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~~G~I 514 (694)
T TIGR01846 442 RSAGLAALPELRGAITFENIRFRYAPD-SPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQV 514 (694)
T ss_pred cCCCCCCCCCCCCeEEEEEEEEEcCCC-CccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceE
Confidence 322111223346899999999999754 2458999999999999999999999999999999999999999986
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-38 Score=397.23 Aligned_cols=388 Identities=14% Similarity=0.151 Sum_probs=324.3
Q ss_pred HHHHHhhcccchHHHHHHHHHHHHHhhHHhHHHHHHHHHHHhhccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001438 684 AIKLYSMVRPDWTYGVCGTICAIIAGAQMPLFALGVSQALVAYYMDWDTTQREVKKITILFCCAAVITVIVHAIEHLSFG 763 (1077)
Q Consensus 684 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 763 (1077)
...++.+.+++++.+...++++++..+...+.++.+..+++....... ......+...++++.++..++.+++.++..
T Consensus 142 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~p~~~~~iid~v~~~~~--~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (710)
T TIGR03796 142 LRALWRRLRGSRGALLYLLLAGLLLVLPGLVIPAFSQIFVDEILVQGR--QDWLRPLLLGMGLTALLQGVLTWLQLYYLR 219 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666677666666666666666666677777777765543211 111222334455556667788889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCccccccccCCchhHHHHHhhcHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 001438 764 IMGERLTLRVREKMFSAILSNEIGWFDEMDNSSSILASRLESDATLLRTIVVDRSTILIQNFGLVTASFVIAFILNWRIT 843 (1077)
Q Consensus 764 ~~~~~~~~~Lr~~l~~~llr~p~~FFD~~~~~~G~IlnR~s~D~~~i~~~l~~~l~~~~~~~~~~~~~i~i~~~~~w~l~ 843 (1077)
..+.++..++|.++|+++++.|++||++ .++|++++|++.| +.+++.+...+..++..++.+++.++++++++|+++
T Consensus 220 ~~~~~~~~~l~~~~~~~ll~l~~~~~~~--~~~g~~~~r~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~ 296 (710)
T TIGR03796 220 RLQIKLAVGMSARFLWHILRLPVRFFAQ--RHAGDIASRVQLN-DQVAEFLSGQLATTALDAVMLVFYALLMLLYDPVLT 296 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHHcC--CcccHHHHHhhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999995 9999999999988 689999988888889999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhHHHHHHHcchHHHHHhcchHHHHHHHHHHhhhhhHHHHHHHHHH
Q 001438 844 LVVVATYPLIISGHISEKLFFQGYGGNLSKAYLKANMLAAEAVSNIRTVAAFCSEDKVLELYSRELVEPSKRSFIRGQIA 923 (1077)
Q Consensus 844 l~~l~~~Pl~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Etl~Gi~tIrAf~~e~~~~~~f~~~~~~~~~~~~~~~~~~ 923 (1077)
++.++..|+.++...+..+..++..++.++...+..+.+.|+++|+++||+++.|+.+.++|.+...+..+...+.....
T Consensus 297 li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (710)
T TIGR03796 297 LIGIAFAAINVLALQLVSRRRVDANRRLQQDAGKLTGVAISGLQSIETLKASGLESDFFSRWAGYQAKLLNAQQELGVLT 376 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999988888877777777777777888888889999999999999999999999999998888888888777778
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHcCCCCc
Q 001438 924 GIFYGISQFFIFSSYGLALWYGSVLMGKELASFKSVMKSFMVLIVTALAMGETLALVPDLLKGNQMAASVFEVLDRKTQV 1003 (1077)
Q Consensus 924 ~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~l~~~~~~ 1003 (1077)
++...+...+..+...+++|+|+.++..|.++++.++++..+......++..+......++.+..+.+|+.++++.+++.
T Consensus 377 ~~~~~~~~~i~~~~~~~il~~g~~~v~~g~lt~G~lva~~~l~~~~~~p~~~l~~~~~~~~~~~~~~~ri~~il~~~~e~ 456 (710)
T TIGR03796 377 QILGVLPTLLTSLNSALILVVGGLRVMEGQLTIGMLVAFQSLMSSFLEPVNNLVGFGGTLQELEGDLNRLDDVLRNPVDP 456 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcc
Confidence 88888888888888889999999999999999999999999999899999999999999999999999999999876654
Q ss_pred cCCC------Cccc-ccccccEEEeeeeeeCCCCCcccccccceeeeeCCCEEEEECCCCCCHHHHHHHHhhccCCCCCC
Q 001438 1004 IGDI------GEEL-TNVEGTIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGK 1076 (1077)
Q Consensus 1004 ~~~~------~~~~-~~~~G~I~f~nVsf~Y~~~~~~~VLk~vsl~I~~GekVaIVGrTGsGKSTLi~lL~Rfyd~~~G~ 1076 (1077)
+... .... ++.+|.|+|+||+|+||+. +.++|+|+||+|+|||+||||||||||||||+++|.|+|+|++|+
T Consensus 457 ~~~~~~~~~~~~~~~~~~~~~I~~~~vsf~y~~~-~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~ 535 (710)
T TIGR03796 457 LLEEEEAPAAGSEPSPRLSGYVELRNITFGYSPL-EPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGE 535 (710)
T ss_pred ccccccccccccccCCCCCCeEEEEEEEEecCCC-CCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcE
Confidence 3221 0111 3346899999999999854 346899999999999999999999999999999999999999998
Q ss_pred C
Q 001438 1077 A 1077 (1077)
Q Consensus 1077 i 1077 (1077)
|
T Consensus 536 I 536 (710)
T TIGR03796 536 I 536 (710)
T ss_pred E
Confidence 6
|
This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin. |
| >PRK14245 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-41 Score=364.98 Aligned_cols=226 Identities=32% Similarity=0.513 Sum_probs=184.8
Q ss_pred cEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcc---cCC--CccEEEECCeeCCCC--CH
Q 001438 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERF---YEP--LSGEILLDGNNIKGL--DL 453 (1077)
Q Consensus 381 ~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~---~~~--~~G~i~~~g~~~~~~--~~ 453 (1077)
.++++|+++.|++ .++|+|+||++++||+++|+||||||||||+++|+|+ ++| ++|+|.++|+++... +.
T Consensus 3 ~l~~~~~~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 79 (250)
T PRK14245 3 KIDARDVNFWYGD---FHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQV 79 (250)
T ss_pred EEEEEEEEEEECC---EeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecccccccH
Confidence 5899999999964 3589999999999999999999999999999999997 454 589999999998754 34
Q ss_pred HHHhhheeEEccCCCcccccHHHHHhcCCCC--C-CHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHH
Q 001438 454 KWLRQQIGLVNQEPALFATTIRENILYGKDD--A-TMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIA 530 (1077)
Q Consensus 454 ~~~r~~i~~v~Q~~~lf~~ti~~ni~~~~~~--~-~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~ 530 (1077)
..+|++++|+||++.+|+.|++||+.++... . ..++..+.+ ....+.+ .+++...+..++.+.+||||||||++
T Consensus 80 ~~~~~~i~~v~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~--~~~l~~~-~l~~~~~~~~~~~~~~LS~G~~qrv~ 156 (250)
T PRK14245 80 DELRKNVGMVFQRPNPFPKSIFENVAYGLRVNGVKDNAFIRQRV--EETLKGA-ALWDEVKDKLKESAFALSGGQQQRLC 156 (250)
T ss_pred HHHhhheEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHH--HHHHHHc-CCCcchhhhhhCCcccCCHHHHHHHH
Confidence 5678889999999999988999999875321 1 111111111 1111211 23333334566778899999999999
Q ss_pred HHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEccCchhHhh-cCEEEEEECCEEEEecChhHHhcCC
Q 001438 531 ISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELISNP 609 (1077)
Q Consensus 531 lARal~~~p~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~ 609 (1077)
||||++.+|+++||||||++||+.+++.+.+.|+++.+++|+|++||+++.+.. ||++++|++|++++.|+++++.+++
T Consensus 157 laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~v~~l~~G~~~~~~~~~~~~~~~ 236 (250)
T PRK14245 157 IARAMAVSPSVLLMDEPASALDPISTAKVEELIHELKKDYTIVIVTHNMQQAARVSDKTAFFYMGEMVEYDDTKKIFTNP 236 (250)
T ss_pred HHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECCEEEEECCHHHHhcCC
Confidence 999999999999999999999999999999999988778999999999999855 9999999999999999999998654
Q ss_pred Cch
Q 001438 610 NSA 612 (1077)
Q Consensus 610 ~~~ 612 (1077)
...
T Consensus 237 ~~~ 239 (250)
T PRK14245 237 EKE 239 (250)
T ss_pred CCh
Confidence 433
|
|
| >cd03291 ABCC_CFTR1 The CFTR subfamily domain 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-40 Score=363.21 Aligned_cols=218 Identities=28% Similarity=0.462 Sum_probs=188.9
Q ss_pred CCcccEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHHH
Q 001438 377 KLSGHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWL 456 (1077)
Q Consensus 377 ~~~~~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~ 456 (1077)
...+.|+++|+++.. .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 35 ~~~~~l~i~nls~~~-----~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~p~~G~I~i~g----------- 98 (282)
T cd03291 35 SDDNNLFFSNLCLVG-----APVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSG----------- 98 (282)
T ss_pred CCCCeEEEEEEEEec-----ccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECC-----------
Confidence 344679999999952 3589999999999999999999999999999999999999999999998
Q ss_pred hhheeEEccCCCcccccHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHHhc
Q 001438 457 RQQIGLVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIV 536 (1077)
Q Consensus 457 r~~i~~v~Q~~~lf~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~ 536 (1077)
.|+|++|++.+|+.|++||+.++... ...+....++..++.+.+..+|.+.++.+++.+.+||||||||++||||++
T Consensus 99 --~i~yv~q~~~l~~~tv~enl~~~~~~-~~~~~~~~l~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~qrv~lAraL~ 175 (282)
T cd03291 99 --RISFSSQFSWIMPGTIKENIIFGVSY-DEYRYKSVVKACQLEEDITKFPEKDNTVLGEGGITLSGGQRARISLARAVY 175 (282)
T ss_pred --EEEEEeCcccccccCHHHHhhccccc-CHHHHHHHHHHhCCHHHHHhccccccceecCCCCcCCHHHHHHHHHHHHHh
Confidence 39999999999999999999986432 223334445555556677788999888999999999999999999999999
Q ss_pred cCCCEEEEeCcCCCCCHHHHHHHHHHH-HHHhCCCeEEEEccCchhHhhcCEEEEEECCEEEEecChhHHhcCCCchHH
Q 001438 537 KNPSILLLDEATSALDAESENSVQEAL-DRVMVGRTTVVVAHRLSTIRNADVIAVVQGRKIVKTGSHEELISNPNSAYA 614 (1077)
Q Consensus 537 ~~p~illlDEpts~lD~~~~~~i~~~l-~~~~~~~t~i~vtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~ 614 (1077)
.+|++|||||||++||+.+.+.+.+.+ +.+.+++|+|++||+++.+..||++++|++|++++.|+++++.+. ...|.
T Consensus 176 ~~p~iLiLDEPt~gLD~~~~~~l~~~ll~~~~~~~tIiiisH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~-~~~~~ 253 (282)
T cd03291 176 KDADLYLLDSPFGYLDVFTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQSL-RPDFS 253 (282)
T ss_pred cCCCEEEEECCCccCCHHHHHHHHHHHHHHhhCCCEEEEEeCChHHHHhCCEEEEEECCEEEEECCHHHHHhc-chHHH
Confidence 999999999999999999999988754 555668999999999999988999999999999999999998764 33444
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >TIGR02857 CydD thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-38 Score=382.34 Aligned_cols=378 Identities=18% Similarity=0.179 Sum_probs=308.7
Q ss_pred hHHHHHHHHHHHHHhhHHhHHHHHHHHHHHhhccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001438 695 WTYGVCGTICAIIAGAQMPLFALGVSQALVAYYMDWDTTQREVKKITILFCCAAVITVIVHAIEHLSFGIMGERLTLRVR 774 (1077)
Q Consensus 695 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~Lr 774 (1077)
|+.+..+++++++.+...+..++.++++++........ ......+.+.+++++++..++.+++.+.....+.+...++|
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iid~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr 80 (529)
T TIGR02857 2 RRALALLGLLGALGALLIIAQAWLLARVIDGLISAGEP-LAELLPALGALALAVLLRALLGWLGERAAARAAAAVKSQLR 80 (529)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCC-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445566666777777778888888888765321111 12233344556666777788889999999999999999999
Q ss_pred HHHHHHHHcCCccccccccCCchhHHHHHhhcHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 001438 775 EKMFSAILSNEIGWFDEMDNSSSILASRLESDATLLRTIVVDRSTILIQNFGLVTASFVIAFILNWRITLVVVATYPLII 854 (1077)
Q Consensus 775 ~~l~~~llr~p~~FFD~~~~~~G~IlnR~s~D~~~i~~~l~~~l~~~~~~~~~~~~~i~i~~~~~w~l~l~~l~~~Pl~i 854 (1077)
.++|+++++.|.+||++ +++|++++|+++|++.+++.+...+..++..++.+++.++++++++|.+++++++.+|+..
T Consensus 81 ~~l~~~l~~~~~~~~~~--~~~g~~~~~l~~di~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~l~~~~l~~ 158 (529)
T TIGR02857 81 ERLLAAVAALGPGWLQG--RPSGELATLALEGVEALDGYFARYLPQLVLAVIIPLAILAAVFPADWISGLILLLTAPLIP 158 (529)
T ss_pred HHHHHHHHhCCchhhcc--CChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 99999999999999995 9999999999999999999999888899999888888999999999999999999988887
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHHhHHHHHHHcchHHHHHhcchHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 001438 855 SGHISEKLFFQGYGGNLSKAYLKANMLAAEAVSNIRTVAAFCSEDKVLELYSRELVEPSKRSFIRGQIAGIFYGISQFFI 934 (1077)
Q Consensus 855 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Etl~Gi~tIrAf~~e~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 934 (1077)
+......++.+...++.++...+....+.|+++|+++||+|+.|+++.++|.+..++..+...+.....+....+.+.+.
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (529)
T TIGR02857 159 IFMILIGWAAQAAARKQWAALSRLSGHFLDRLRGLPTLKLFGRAKAQAAAIARSSEEYRERTMRVLRIAFLSSAVLELFA 238 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77666777776667777778888888999999999999999999999999999888888777776666666666666655
Q ss_pred HHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHcCCCCccCCCCcccccc
Q 001438 935 FSSYGLALWYGSVLMGKELASFKSVMKSFMVLIVTALAMGETLALVPDLLKGNQMAASVFEVLDRKTQVIGDIGEELTNV 1014 (1077)
Q Consensus 935 ~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~ 1014 (1077)
.....+...+++..+..|.++++.++++..+......++..+......++++..+.+|+.++++.+++...... ..++.
T Consensus 239 ~~~~~~~~~~~~~~~~~g~~t~g~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~ll~~~~~~~~~~~-~~~~~ 317 (529)
T TIGR02857 239 TLSVALVAVYIGFRLLAGDLDLATGLFVLLLAPEFYLPLRQLGADYHARADGVAAAEALFAVLDAPRPLAGKAP-VTAAP 317 (529)
T ss_pred HHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCcC-CCCCC
Confidence 55555555566666668999999999888888888889999999999999999999999999985433221111 11123
Q ss_pred cccEEEeeeeeeCCCCCcccccccceeeeeCCCEEEEECCCCCCHHHHHHHHhhccCCCCCCC
Q 001438 1015 EGTIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKA 1077 (1077)
Q Consensus 1015 ~G~I~f~nVsf~Y~~~~~~~VLk~vsl~I~~GekVaIVGrTGsGKSTLi~lL~Rfyd~~~G~i 1077 (1077)
.|+|+|+||+|+||++. .++|+|+||+|+|||++|||||||||||||+++|.|+|+|++|+|
T Consensus 318 ~~~i~~~~v~f~y~~~~-~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I 379 (529)
T TIGR02857 318 APSLEFSGLSVAYPGRR-APALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSI 379 (529)
T ss_pred CCeEEEEEEEEECCCCC-cccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEE
Confidence 47899999999998642 468999999999999999999999999999999999999999986
|
Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD |
| >PRK14251 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-41 Score=364.88 Aligned_cols=228 Identities=32% Similarity=0.517 Sum_probs=184.2
Q ss_pred cEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccC-----CCccEEEECCeeCCC--CCH
Q 001438 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYE-----PLSGEILLDGNNIKG--LDL 453 (1077)
Q Consensus 381 ~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~-----~~~G~i~~~g~~~~~--~~~ 453 (1077)
.|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|+++.. .+.
T Consensus 4 ~l~~~~l~~~~~~---~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~~ 80 (251)
T PRK14251 4 IISAKDVHLSYGN---YEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDL 80 (251)
T ss_pred eEEEEeeEEEECC---eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccchH
Confidence 4899999999964 358999999999999999999999999999999999997 479999999999864 334
Q ss_pred HHHhhheeEEccCCCcccccHHHHHhcCCCC--C-CHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHH
Q 001438 454 KWLRQQIGLVNQEPALFATTIRENILYGKDD--A-TMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIA 530 (1077)
Q Consensus 454 ~~~r~~i~~v~Q~~~lf~~ti~~ni~~~~~~--~-~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~ 530 (1077)
..+|+.++|++|++.+|+.|++||+.++... . ..+...+.+ ....+.+ .+...........+.+||||||||++
T Consensus 81 ~~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~--~~~l~~~-~l~~~~~~~~~~~~~~LS~Gq~qr~~ 157 (251)
T PRK14251 81 VELRKEVGMVFQQPTPFPFSVYDNVAYGLKIAGVKDKELIDQRV--EESLKQA-AIWKETKDNLDRNAQAFSGGQQQRIC 157 (251)
T ss_pred HHhhccEEEEecCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHH--HHHHHHc-CCCcchHHHhccChhhCCHHHHHHHH
Confidence 5678889999999999999999999875321 1 111111111 1111111 12111122345677899999999999
Q ss_pred HHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEccCchhHhh-cCEEEEEECCEEEEecChhHHhcCC
Q 001438 531 ISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELISNP 609 (1077)
Q Consensus 531 lARal~~~p~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~ 609 (1077)
||||++++|+++||||||++||+.+.+.+.+.|+++.+++|+|+|||+++.+.. ||+|++|++|++++.|+++++...+
T Consensus 158 laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~ 237 (251)
T PRK14251 158 IARALAVRPKVVLLDEPTSALDPISSSEIEETLMELKHQYTFIMVTHNLQQAGRISDQTAFLMNGDLIEAGPTEEMFIAP 237 (251)
T ss_pred HHHHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHHHcCCeEEEEECCHHHHHhhcCEEEEEECCEEEEeCCHHHHHhCC
Confidence 999999999999999999999999999999999988778999999999999765 9999999999999999999987654
Q ss_pred CchHH
Q 001438 610 NSAYA 614 (1077)
Q Consensus 610 ~~~~~ 614 (1077)
...|.
T Consensus 238 ~~~~~ 242 (251)
T PRK14251 238 KKQIT 242 (251)
T ss_pred CCHHH
Confidence 44443
|
|
| >PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-41 Score=368.49 Aligned_cols=218 Identities=30% Similarity=0.537 Sum_probs=183.0
Q ss_pred EEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCC-HHHHhhhe
Q 001438 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLD-LKWLRQQI 460 (1077)
Q Consensus 382 i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~-~~~~r~~i 460 (1077)
++++|++++|++. .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++...+ ...+++.+
T Consensus 2 l~~~~l~~~~~~~--~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i 79 (274)
T PRK13644 2 IRLENVSYSYPDG--TPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRKLV 79 (274)
T ss_pred EEEEEEEEEcCCC--CceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEECCccccHHHHHhhe
Confidence 6899999999632 35899999999999999999999999999999999999999999999999997765 35678889
Q ss_pred eEEccCCC--cccccHHHHHhcCCCC--CCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHHhc
Q 001438 461 GLVNQEPA--LFATTIRENILYGKDD--ATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIV 536 (1077)
Q Consensus 461 ~~v~Q~~~--lf~~ti~~ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~ 536 (1077)
+|++|+|. +++.|++|||.++... .+.++..+.+ ..+ ++.+ |++......+..||||||||++||||++
T Consensus 80 ~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~--~~~---l~~~--gl~~~~~~~~~~LS~G~~qrv~laral~ 152 (274)
T PRK13644 80 GIVFQNPETQFVGRTVEEDLAFGPENLCLPPIEIRKRV--DRA---LAEI--GLEKYRHRSPKTLSGGQGQCVALAGILT 152 (274)
T ss_pred EEEEEChhhhcccchHHHHHHhhHHHcCCCHHHHHHHH--HHH---HHHC--CCHHHhcCCcccCCHHHHHHHHHHHHHH
Confidence 99999986 4567999999876421 1222222111 111 2222 3444456677899999999999999999
Q ss_pred cCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCeEEEEccCchhHhhcCEEEEEECCEEEEecChhHHhcC
Q 001438 537 KNPSILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLSTIRNADVIAVVQGRKIVKTGSHEELISN 608 (1077)
Q Consensus 537 ~~p~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~vtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~ 608 (1077)
.+|+++||||||++||+.++..+.+.|+++. +|+|+|++||+++.+..||+|++|++|++++.|+++++...
T Consensus 153 ~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~~tH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 225 (274)
T PRK13644 153 MEPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHNLEELHDADRIIVMDRGKIVLEGEPENVLSD 225 (274)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHhhCCEEEEEECCEEEEECCHHHHhcC
Confidence 9999999999999999999999999998875 58999999999999988999999999999999999998654
|
|
| >PRK14237 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-40 Score=366.50 Aligned_cols=225 Identities=28% Similarity=0.460 Sum_probs=185.9
Q ss_pred cccEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccC-----CCccEEEECCeeCCC--C
Q 001438 379 SGHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYE-----PLSGEILLDGNNIKG--L 451 (1077)
Q Consensus 379 ~~~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~-----~~~G~i~~~g~~~~~--~ 451 (1077)
...|+++|++++|++ +++|+|+||++++||+++|+||||||||||+++|+|+++ |++|+|.++|+++.. .
T Consensus 18 ~~~l~~~nl~~~~~~---~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~ 94 (267)
T PRK14237 18 EIALSTKDLHVYYGK---KEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEI 94 (267)
T ss_pred CeEEEEeeEEEEECC---eeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccccC
Confidence 346999999999963 469999999999999999999999999999999999997 589999999999864 3
Q ss_pred CHHHHhhheeEEccCCCcccccHHHHHhcCCCC--C-CHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHH
Q 001438 452 DLKWLRQQIGLVNQEPALFATTIRENILYGKDD--A-TMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQR 528 (1077)
Q Consensus 452 ~~~~~r~~i~~v~Q~~~lf~~ti~~ni~~~~~~--~-~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqr 528 (1077)
+...+|+.++|+||++.+|+.|++||+.++... . ..++..+ +..+..+.+ .+.++.++..+..+.+||||||||
T Consensus 95 ~~~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~--~~~~~l~~~-~l~~~i~~~~~~~~~~LS~G~~qr 171 (267)
T PRK14237 95 NVYEMRKHIGMVFQRPNPFAKSIYENITFALERAGVKDKKVLDE--IVETSLKQA-ALWDQVKDDLHKSALTLSGGQQQR 171 (267)
T ss_pred ChHHHhcceEEEecCCccccccHHHHHHhHHHhcCCCCHHHHHH--HHHHHHHHc-CCCchhhhhhcCCcccCCHHHHHH
Confidence 355678889999999999989999999876321 1 1111111 111111111 222233345677888999999999
Q ss_pred HHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEccCchhHh-hcCEEEEEECCEEEEecChhHHhc
Q 001438 529 IAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIR-NADVIAVVQGRKIVKTGSHEELIS 607 (1077)
Q Consensus 529 i~lARal~~~p~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~vtH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~ 607 (1077)
++||||++++|+++||||||++||+.+.+.+.+.|+++.++.|+|++||+++.+. .||++++|++|++++.|+++++..
T Consensus 172 l~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 251 (267)
T PRK14237 172 LCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELKKNYTIIIVTHNMQQAARASDYTAFFYLGDLIEYDKTRNIFT 251 (267)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhcCEEEEEECCEEEEeCCHHHHhc
Confidence 9999999999999999999999999999999999998877899999999999885 599999999999999999999876
Q ss_pred CC
Q 001438 608 NP 609 (1077)
Q Consensus 608 ~~ 609 (1077)
.+
T Consensus 252 ~~ 253 (267)
T PRK14237 252 NP 253 (267)
T ss_pred CC
Confidence 53
|
|
| >TIGR02769 nickel_nikE nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-41 Score=367.88 Aligned_cols=229 Identities=28% Similarity=0.420 Sum_probs=183.6
Q ss_pred cEEEEeEEEEcCCC------CCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHH
Q 001438 381 HIEFKDVSFCYPSR------PDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLK 454 (1077)
Q Consensus 381 ~i~~~~v~~~y~~~------~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~ 454 (1077)
.|+++|++++|++. .++.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+..
T Consensus 2 ~l~~~~l~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~ 81 (265)
T TIGR02769 2 LLEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRK 81 (265)
T ss_pred eEEEEeEEEEeccCccccccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEccccCHH
Confidence 37899999999632 134689999999999999999999999999999999999999999999999999877654
Q ss_pred H---HhhheeEEccCCC--ccc-ccHHHHHhcCCC---CCCHHHHHHHHHHHhHHHHHhcCccchh-hhhcCCCCCCChH
Q 001438 455 W---LRQQIGLVNQEPA--LFA-TTIRENILYGKD---DATMEEITRAAKLSEAMSFISNLPERFE-TQVGERGIQLSGG 524 (1077)
Q Consensus 455 ~---~r~~i~~v~Q~~~--lf~-~ti~~ni~~~~~---~~~~~~~~~~~~~~~~~~~i~~l~~g~~-t~~~~~g~~LSgG 524 (1077)
. +|+.++|++|+|. +++ .|++||+.++.. ....++..+ + ..+.++.+ |++ ......+.+||||
T Consensus 82 ~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~--~---~~~~l~~~--gl~~~~~~~~~~~LSgG 154 (265)
T TIGR02769 82 QRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESEQKA--R---IAELLDMV--GLRSEDADKLPRQLSGG 154 (265)
T ss_pred HHHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHhcCCCHHHHHH--H---HHHHHHHc--CCChhhhhCChhhCCHH
Confidence 3 5778999999983 443 599999975421 111111111 1 11222222 332 2345677899999
Q ss_pred HHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCeEEEEccCchhHhh-cCEEEEEECCEEEEecC
Q 001438 525 QKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMV--GRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGS 601 (1077)
Q Consensus 525 qkqri~lARal~~~p~illlDEpts~lD~~~~~~i~~~l~~~~~--~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~g~ 601 (1077)
||||++||||++.+|++|||||||++||+.+++.+.+.|+++.+ ++|+|++||+++.+.. ||++++|++|++++.|+
T Consensus 155 e~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~ 234 (265)
T TIGR02769 155 QLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLRLVQSFCQRVAVMDKGQIVEECD 234 (265)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHHhcEEEEEeCCEEEEECC
Confidence 99999999999999999999999999999999999999998753 8999999999999875 99999999999999999
Q ss_pred hhHHhcCCCchHHHH
Q 001438 602 HEELISNPNSAYAAL 616 (1077)
Q Consensus 602 ~~~l~~~~~~~~~~~ 616 (1077)
++++....+..+..+
T Consensus 235 ~~~~~~~~~~~~~~~ 249 (265)
T TIGR02769 235 VAQLLSFKHPAGRNL 249 (265)
T ss_pred HHHHcCCCCHHHHHH
Confidence 999987533334333
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. |
| >PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-41 Score=376.09 Aligned_cols=233 Identities=23% Similarity=0.397 Sum_probs=184.9
Q ss_pred cEEEEeEEEEcCCCCC-cccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccC----CCccEEEECCeeCCCCCHHH
Q 001438 381 HIEFKDVSFCYPSRPD-VAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYE----PLSGEILLDGNNIKGLDLKW 455 (1077)
Q Consensus 381 ~i~~~~v~~~y~~~~~-~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~----~~~G~i~~~g~~~~~~~~~~ 455 (1077)
.++++|+++.|+.... ..+|+||||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|+++.+++.++
T Consensus 3 ~L~v~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~ 82 (326)
T PRK11022 3 LLNVDKLSVHFGDESAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKE 82 (326)
T ss_pred eEEEeCeEEEECCCCccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHHH
Confidence 3799999999975322 358999999999999999999999999999999999997 48999999999999888766
Q ss_pred Hhh----heeEEccCCC--cccc-cHHHHHhcCC---CCCCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHH
Q 001438 456 LRQ----QIGLVNQEPA--LFAT-TIRENILYGK---DDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQ 525 (1077)
Q Consensus 456 ~r~----~i~~v~Q~~~--lf~~-ti~~ni~~~~---~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq 525 (1077)
+++ .|+||||+|. +.+. |+.+++.... .....++..+ +..++.+.+ .+++ .....+..+.+|||||
T Consensus 83 ~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~~~~~~~~~~--~~~~~L~~~-gL~~-~~~~l~~~p~~LSgGq 158 (326)
T PRK11022 83 RRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKKTRRQ--RAIDLLNQV-GIPD-PASRLDVYPHQLSGGM 158 (326)
T ss_pred HHHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhcCCCHHHHHH--HHHHHHHHC-CCCC-hHHHHhCCchhCCHHH
Confidence 543 6999999995 4433 6666654221 0112121111 111222222 2321 1234567788999999
Q ss_pred HHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh--CCCeEEEEccCchhHh-hcCEEEEEECCEEEEecCh
Q 001438 526 KQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVM--VGRTTVVVAHRLSTIR-NADVIAVVQGRKIVKTGSH 602 (1077)
Q Consensus 526 kqri~lARal~~~p~illlDEpts~lD~~~~~~i~~~l~~~~--~~~t~i~vtH~~~~~~-~~d~i~~l~~G~i~~~g~~ 602 (1077)
|||++|||||+.+|++||+||||++||+.++..+.+.|+++. .|.|+|+|||+++.+. .||+|++|++|+|+|.|++
T Consensus 159 ~QRv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl~~~~~~adri~vm~~G~ive~g~~ 238 (326)
T PRK11022 159 SQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLALVAEAAHKIIVMYAGQVVETGKA 238 (326)
T ss_pred HHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCH
Confidence 999999999999999999999999999999999999999875 3899999999999985 5999999999999999999
Q ss_pred hHHhcCCCchHHHHH
Q 001438 603 EELISNPNSAYAALV 617 (1077)
Q Consensus 603 ~~l~~~~~~~~~~~~ 617 (1077)
+++.+++...|.+..
T Consensus 239 ~~~~~~p~hpyt~~l 253 (326)
T PRK11022 239 HDIFRAPRHPYTQAL 253 (326)
T ss_pred HHHhhCCCChHHHHH
Confidence 999988777776543
|
|
| >PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-41 Score=375.86 Aligned_cols=231 Identities=29% Similarity=0.443 Sum_probs=186.8
Q ss_pred cEEEEeEEEEcCCCC-------CcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCH
Q 001438 381 HIEFKDVSFCYPSRP-------DVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDL 453 (1077)
Q Consensus 381 ~i~~~~v~~~y~~~~-------~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~ 453 (1077)
.|+++|+++.|+... ...+++||||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|+++..++.
T Consensus 5 ~l~v~nl~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~~~g~~l~~~~~ 84 (327)
T PRK11308 5 LLQAIDLKKHYPVKRGLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKADP 84 (327)
T ss_pred eEEEeeeEEEEcCCCCccccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCCCcEEEECCEEcCcCCH
Confidence 489999999996321 2468999999999999999999999999999999999999999999999999988765
Q ss_pred H---HHhhheeEEccCCC--cccc-cHHHHHhcCC---CCCCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChH
Q 001438 454 K---WLRQQIGLVNQEPA--LFAT-TIRENILYGK---DDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGG 524 (1077)
Q Consensus 454 ~---~~r~~i~~v~Q~~~--lf~~-ti~~ni~~~~---~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgG 524 (1077)
. .+|++|+||+|+|. +++. |+.+|+..+. .....++..+ +..++.+.+ .+++ ......+.+||||
T Consensus 85 ~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~~~~~~~~~~~--~~~~~l~~~-gL~~---~~~~~~p~~LSgG 158 (327)
T PRK11308 85 EAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINTSLSAAERRE--KALAMMAKV-GLRP---EHYDRYPHMFSGG 158 (327)
T ss_pred HHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHccCCCHHHHHH--HHHHHHHHC-CCCh---HHhcCCCccCCHH
Confidence 3 46778999999993 5554 9999986421 1112222111 111222222 2221 1234567789999
Q ss_pred HHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh--CCCeEEEEccCchhHhh-cCEEEEEECCEEEEecC
Q 001438 525 QKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVM--VGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGS 601 (1077)
Q Consensus 525 qkqri~lARal~~~p~illlDEpts~lD~~~~~~i~~~l~~~~--~~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~g~ 601 (1077)
||||++|||||+.+|++||+||||++||..+++.+.+.|+++. .|.|+|+|||+++.+.. ||+|++|++|+|+|.|+
T Consensus 159 q~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~adrv~vm~~G~ive~g~ 238 (327)
T PRK11308 159 QRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLSVVEHIADEVMVMYLGRCVEKGT 238 (327)
T ss_pred HHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECC
Confidence 9999999999999999999999999999999999999998874 38999999999999975 99999999999999999
Q ss_pred hhHHhcCCCchHHHHH
Q 001438 602 HEELISNPNSAYAALV 617 (1077)
Q Consensus 602 ~~~l~~~~~~~~~~~~ 617 (1077)
.+++.+++...|.+..
T Consensus 239 ~~~~~~~p~hpyt~~l 254 (327)
T PRK11308 239 KEQIFNNPRHPYTQAL 254 (327)
T ss_pred HHHHhcCCCCHHHHHH
Confidence 9999987777776543
|
|
| >TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-41 Score=359.93 Aligned_cols=209 Identities=29% Similarity=0.494 Sum_probs=172.4
Q ss_pred EEEEeEEEEcCCCC-CcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHH---Hh
Q 001438 382 IEFKDVSFCYPSRP-DVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKW---LR 457 (1077)
Q Consensus 382 i~~~~v~~~y~~~~-~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~---~r 457 (1077)
++++|++++|++.. ..++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+... +|
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (221)
T TIGR02211 2 LKCENLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAKLR 81 (221)
T ss_pred EEEEeeeEEccCCCcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCHhHHHHHH
Confidence 68999999996421 246899999999999999999999999999999999999999999999999998776543 34
Q ss_pred -hheeEEccCCCcccc-cHHHHHhcCCC--CCCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHH
Q 001438 458 -QQIGLVNQEPALFAT-TIRENILYGKD--DATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISR 533 (1077)
Q Consensus 458 -~~i~~v~Q~~~lf~~-ti~~ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lAR 533 (1077)
++++|++|++.+|+. |++||+.++.. ....++..+. . .+.++.+ |++........+||||||||++|||
T Consensus 82 ~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~--~---~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~lar 154 (221)
T TIGR02211 82 NKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEAKER--A---YEMLEKV--GLEHRINHRPSELSGGERQRVAIAR 154 (221)
T ss_pred HhcEEEEecccccCCCCcHHHHHHHHHHhcCCCHHHHHHH--H---HHHHHHc--CChhhhhCChhhCCHHHHHHHHHHH
Confidence 679999999999864 99999987421 1111211111 1 1222222 4444456667899999999999999
Q ss_pred HhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh--CCCeEEEEccCchhHhhcCEEEEEECCEEE
Q 001438 534 AIVKNPSILLLDEATSALDAESENSVQEALDRVM--VGRTTVVVAHRLSTIRNADVIAVVQGRKIV 597 (1077)
Q Consensus 534 al~~~p~illlDEpts~lD~~~~~~i~~~l~~~~--~~~t~i~vtH~~~~~~~~d~i~~l~~G~i~ 597 (1077)
|++.+|++|||||||++||+.+++.+.+.|+++. .++|+|++||+++.+..||+|++|++|+++
T Consensus 155 al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~d~v~~l~~G~i~ 220 (221)
T TIGR02211 155 ALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLELAKKLDRVLEMKDGQLF 220 (221)
T ss_pred HHhCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhhcCEEEEEeCCEec
Confidence 9999999999999999999999999999998874 378999999999999889999999999985
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina. |
| >PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-41 Score=361.52 Aligned_cols=218 Identities=24% Similarity=0.405 Sum_probs=181.2
Q ss_pred cEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHH-Hhhh
Q 001438 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKW-LRQQ 459 (1077)
Q Consensus 381 ~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~-~r~~ 459 (1077)
.++++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+... .++.
T Consensus 5 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~ 81 (237)
T PRK11614 5 MLSFDKVSAHYGK---IQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMREA 81 (237)
T ss_pred EEEEEeEEEeeCC---ceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEecCCCCHHHHHHhC
Confidence 4899999999964 35899999999999999999999999999999999999999999999999998877554 5778
Q ss_pred eeEEccCCCcccc-cHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHHhccC
Q 001438 460 IGLVNQEPALFAT-TIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKN 538 (1077)
Q Consensus 460 i~~v~Q~~~lf~~-ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~~~ 538 (1077)
++|++|++.+|++ |++||+.++......++..+. .....+.+.. ++........+||||||||++||||++.+
T Consensus 82 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~--~~~~l~~~~~----l~~~~~~~~~~LS~G~~qrl~la~al~~~ 155 (237)
T PRK11614 82 VAIVPEGRRVFSRMTVEENLAMGGFFAERDQFQER--IKWVYELFPR----LHERRIQRAGTMSGGEQQMLAIGRALMSQ 155 (237)
T ss_pred EEEeccCcccCCCCcHHHHHHHhhhccChhHHHHH--HHHHHHHHHH----HHHHHhCchhhCCHHHHHHHHHHHHHHhC
Confidence 9999999999985 999999876422222221111 1112222211 12223446678999999999999999999
Q ss_pred CCEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCeEEEEccCchhHh-hcCEEEEEECCEEEEecChhHHhc
Q 001438 539 PSILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLSTIR-NADVIAVVQGRKIVKTGSHEELIS 607 (1077)
Q Consensus 539 p~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~vtH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~ 607 (1077)
|+|+||||||++||+.+.+.+.+.|+++. +++|+|++||+++.+. .||++++|++|++++.|+++++..
T Consensus 156 p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 226 (237)
T PRK11614 156 PRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNANQALKLADRGYVLENGHVVLEDTGDALLA 226 (237)
T ss_pred CCEEEEcCccccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHhhCCEEEEEeCCEEEeeCCHHHHhc
Confidence 99999999999999999999999998874 5899999999999775 599999999999999999999864
|
|
| >PRK14236 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-40 Score=367.20 Aligned_cols=225 Identities=32% Similarity=0.528 Sum_probs=185.6
Q ss_pred cccEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCC-----CccEEEECCeeCCC--C
Q 001438 379 SGHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEP-----LSGEILLDGNNIKG--L 451 (1077)
Q Consensus 379 ~~~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~-----~~G~i~~~g~~~~~--~ 451 (1077)
.+.++++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.++.. .
T Consensus 23 ~~~l~~~nl~~~~~~---~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~~ 99 (272)
T PRK14236 23 QTALEVRNLNLFYGD---KQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKV 99 (272)
T ss_pred CcEEEEEEEEEEECC---eeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECccccc
Confidence 356999999999964 3589999999999999999999999999999999999884 89999999999864 3
Q ss_pred CHHHHhhheeEEccCCCcccccHHHHHhcCCC--CC-CHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHH
Q 001438 452 DLKWLRQQIGLVNQEPALFATTIRENILYGKD--DA-TMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQR 528 (1077)
Q Consensus 452 ~~~~~r~~i~~v~Q~~~lf~~ti~~ni~~~~~--~~-~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqr 528 (1077)
+...+|+.++|++|++.+|+.|++||+.++.. .. ..++..+ +.....+.+ .+++...+..+..+.+||||||||
T Consensus 100 ~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~--~~~~~l~~~-~l~~~~~~~~~~~~~~LS~Gq~qr 176 (272)
T PRK14236 100 DVAELRRRVGMVFQRPNPFPKSIYENVVYGLRLQGINNRRVLDE--AVERSLRGA-ALWDEVKDRLHENAFGLSGGQQQR 176 (272)
T ss_pred CHHHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHH--HHHHHHHHc-CCChhHHHHhhCCcccCCHHHHHH
Confidence 45567889999999999998999999987532 11 1111111 111111111 233233345677788999999999
Q ss_pred HHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEccCchhHhh-cCEEEEEECCEEEEecChhHHhc
Q 001438 529 IAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELIS 607 (1077)
Q Consensus 529 i~lARal~~~p~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~ 607 (1077)
++||||++++|+++||||||++||+.+++.+.+.|+++.+++|+|++||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 177 v~laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 256 (272)
T PRK14236 177 LVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKSKYTIVIVTHNMQQAARVSDYTAFMYMGKLVEYGDTDTLFT 256 (272)
T ss_pred HHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEeCCHHHHHhhCCEEEEEECCEEEecCCHHHHhc
Confidence 99999999999999999999999999999999999988778999999999999764 99999999999999999999876
Q ss_pred CC
Q 001438 608 NP 609 (1077)
Q Consensus 608 ~~ 609 (1077)
.+
T Consensus 257 ~~ 258 (272)
T PRK14236 257 SP 258 (272)
T ss_pred CC
Confidence 53
|
|
| >PRK14261 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-41 Score=364.87 Aligned_cols=229 Identities=26% Similarity=0.493 Sum_probs=187.3
Q ss_pred cEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCC-----CccEEEECCeeCCCC--CH
Q 001438 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEP-----LSGEILLDGNNIKGL--DL 453 (1077)
Q Consensus 381 ~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~-----~~G~i~~~g~~~~~~--~~ 453 (1077)
.|+++|++++|++ ..+|+|+||++++||+++|+||||||||||+++|+|+.+| ++|+|.++|+++... +.
T Consensus 6 ~i~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 82 (253)
T PRK14261 6 ILSTKNLNLWYGE---KHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADV 82 (253)
T ss_pred eEEEeeeEEEECC---eeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccccccch
Confidence 5899999999963 3589999999999999999999999999999999999763 489999999998765 44
Q ss_pred HHHhhheeEEccCCCcccccHHHHHhcCCCCC---CHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHH
Q 001438 454 KWLRQQIGLVNQEPALFATTIRENILYGKDDA---TMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIA 530 (1077)
Q Consensus 454 ~~~r~~i~~v~Q~~~lf~~ti~~ni~~~~~~~---~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~ 530 (1077)
...|+.++|++|++.+|+.|++||+.++.... ...+..+. .....+.+ .+.+++.+..++.+.+||||||||++
T Consensus 83 ~~~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~--~~~~l~~~-~l~~~l~~~~~~~~~~LS~G~~qrv~ 159 (253)
T PRK14261 83 VALRRKIGMVFQRPNPFPKSIYENVAYGPRIHGEKNKKTLDTI--VEKSLKGA-ALWDEVKDRLHDSALSLSGGQQQRLC 159 (253)
T ss_pred hhhhceEEEEecCCccCcccHHHHHHhhHHhcCCCCHHHHHHH--HHHHHHHh-cCchhhHHHhhcChhhCCHHHHHHHH
Confidence 56778899999999999899999998864211 11111111 11111111 23333445567788899999999999
Q ss_pred HHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEccCchhHhh-cCEEEEEECCEEEEecChhHHhcCC
Q 001438 531 ISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELISNP 609 (1077)
Q Consensus 531 lARal~~~p~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~ 609 (1077)
||||++.+|+++||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+.. ||++++|++|++++.|+++++..++
T Consensus 160 laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~tvii~sh~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~ 239 (253)
T PRK14261 160 IARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKKEYTVIIVTHNMQQAARVSDYTGFMYLGKLIEFDKTTQIFENP 239 (253)
T ss_pred HHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhhCceEEEEEcCHHHHHhhCCEEEEEECCEEEEcCCHHHHHhCC
Confidence 999999999999999999999999999999999988777999999999999865 9999999999999999999987654
Q ss_pred CchHHH
Q 001438 610 NSAYAA 615 (1077)
Q Consensus 610 ~~~~~~ 615 (1077)
...+.+
T Consensus 240 ~~~~~~ 245 (253)
T PRK14261 240 HEELTE 245 (253)
T ss_pred CcHHHH
Confidence 434443
|
|
| >TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-41 Score=361.37 Aligned_cols=214 Identities=29% Similarity=0.492 Sum_probs=178.7
Q ss_pred EEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHH-Hhhhe
Q 001438 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKW-LRQQI 460 (1077)
Q Consensus 382 i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~-~r~~i 460 (1077)
|+++|+++.|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+... .++++
T Consensus 1 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i 77 (230)
T TIGR03410 1 LEVSNLNVYYGQ---SHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERARAGI 77 (230)
T ss_pred CEEEeEEEEeCC---eEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHHhCe
Confidence 478999999974 35899999999999999999999999999999999999999999999999998776654 46689
Q ss_pred eEEccCCCcccc-cHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHHhccCC
Q 001438 461 GLVNQEPALFAT-TIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNP 539 (1077)
Q Consensus 461 ~~v~Q~~~lf~~-ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~~~p 539 (1077)
+|+||++.+|+. |++||+.++.......+...+. ...+.+ +++.........+||||||||++||||++++|
T Consensus 78 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~---~~l~~~----~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p 150 (230)
T TIGR03410 78 AYVPQGREIFPRLTVEENLLTGLAALPRRSRKIPD---EIYELF----PVLKEMLGRRGGDLSGGQQQQLAIARALVTRP 150 (230)
T ss_pred EEeccCCcccCCCcHHHHHHHHHHhcCcchHHHHH---HHHHHH----HhHHHHhhCChhhCCHHHHHHHHHHHHHhcCC
Confidence 999999999986 9999998764221111100111 111111 11233345667789999999999999999999
Q ss_pred CEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCeEEEEccCchhHhh-cCEEEEEECCEEEEecChhHH
Q 001438 540 SILLLDEATSALDAESENSVQEALDRVMV--GRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEEL 605 (1077)
Q Consensus 540 ~illlDEpts~lD~~~~~~i~~~l~~~~~--~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l 605 (1077)
+++||||||++||+.+.+.+.+.|.++.+ ++|+|++||+++.+.. ||+|++|++|++++.|+++++
T Consensus 151 ~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~g~i~~~~~~~~~ 219 (230)
T TIGR03410 151 KLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLDFARELADRYYVMERGRVVASGAGDEL 219 (230)
T ss_pred CEEEecCCcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHc
Confidence 99999999999999999999999988753 7999999999999875 999999999999999999887
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-40 Score=363.10 Aligned_cols=223 Identities=32% Similarity=0.505 Sum_probs=183.3
Q ss_pred cEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCC--------
Q 001438 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLD-------- 452 (1077)
Q Consensus 381 ~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~-------- 452 (1077)
.++++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 79 (250)
T PRK11264 3 AIEVKNLVKKFHG---QTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQKGL 79 (250)
T ss_pred cEEEeceEEEECC---eeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccccccchhhH
Confidence 3899999999974 35899999999999999999999999999999999999999999999999986542
Q ss_pred HHHHhhheeEEccCCCccc-ccHHHHHhcCC---CCCCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHH
Q 001438 453 LKWLRQQIGLVNQEPALFA-TTIRENILYGK---DDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQR 528 (1077)
Q Consensus 453 ~~~~r~~i~~v~Q~~~lf~-~ti~~ni~~~~---~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqr 528 (1077)
...+|++++|+||++.+|+ .|++||+.++. .....++..+.+ .+.++.+ |++......+.+||||||||
T Consensus 80 ~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~-----~~~l~~~--gl~~~~~~~~~~LS~Gq~qr 152 (250)
T PRK11264 80 IRQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATARA-----RELLAKV--GLAGKETSYPRRLSGGQQQR 152 (250)
T ss_pred HHHhhhhEEEEecCcccCCCCCHHHHHHHHHHHhcCCCHHHHHHHH-----HHHHHHc--CCcchhhCChhhCChHHHHH
Confidence 2456788999999999886 59999998642 111222211111 1222222 33334456778999999999
Q ss_pred HHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCeEEEEccCchhHhh-cCEEEEEECCEEEEecChhHHh
Q 001438 529 IAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELI 606 (1077)
Q Consensus 529 i~lARal~~~p~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~ 606 (1077)
++||||++.+|++|||||||++||+.+++.+.+.|+++. +++|+|++||+++.+.. ||+|++|++|++++.|+++++.
T Consensus 153 v~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 232 (250)
T PRK11264 153 VAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMSFARDVADRAIFMDQGRIVEQGPAKALF 232 (250)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHHh
Confidence 999999999999999999999999999999999998875 48999999999999865 9999999999999999999987
Q ss_pred cCCCchH
Q 001438 607 SNPNSAY 613 (1077)
Q Consensus 607 ~~~~~~~ 613 (1077)
+.+...|
T Consensus 233 ~~~~~~~ 239 (250)
T PRK11264 233 ADPQQPR 239 (250)
T ss_pred cCCCCHH
Confidence 6543333
|
|
| >PRK14256 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-40 Score=363.96 Aligned_cols=228 Identities=26% Similarity=0.492 Sum_probs=184.7
Q ss_pred ccEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccC--C---CccEEEECCeeCCCC--C
Q 001438 380 GHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYE--P---LSGEILLDGNNIKGL--D 452 (1077)
Q Consensus 380 ~~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~--~---~~G~i~~~g~~~~~~--~ 452 (1077)
+.|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++ | ++|+|.++|+++... +
T Consensus 3 ~~l~~~nl~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~ 79 (252)
T PRK14256 3 NKVKLEQLNVHFGK---NHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVD 79 (252)
T ss_pred cEEEEEEEEEEeCC---eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccCC
Confidence 56999999999973 358999999999999999999999999999999999986 4 689999999998643 3
Q ss_pred HHHHhhheeEEccCCCcccc-cHHHHHhcCCCC---CCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHH
Q 001438 453 LKWLRQQIGLVNQEPALFAT-TIRENILYGKDD---ATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQR 528 (1077)
Q Consensus 453 ~~~~r~~i~~v~Q~~~lf~~-ti~~ni~~~~~~---~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqr 528 (1077)
...+|+.++|+||++.+|+. |++||+.++... .+.++..+. .....+.+ .+........+..+.+||||||||
T Consensus 80 ~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~--~~~~l~~~-~l~~~~~~~~~~~~~~LS~G~~qr 156 (252)
T PRK14256 80 PVSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEADEI--VESSLKRV-ALWDEVKDRLKSNAMELSGGQQQR 156 (252)
T ss_pred hHHhhccEEEEecCCCCCCcCcHHHHHHhHHHhcCCCCHHHHHHH--HHHHHHHc-CCchhhhHHhhCCcCcCCHHHHHH
Confidence 45678889999999999984 999999875311 112211111 11111111 121122233456678999999999
Q ss_pred HHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEccCchhHh-hcCEEEEEECCEEEEecChhHHhc
Q 001438 529 IAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIR-NADVIAVVQGRKIVKTGSHEELIS 607 (1077)
Q Consensus 529 i~lARal~~~p~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~vtH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~ 607 (1077)
++||||++.+|+++||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+. .||++++|++|++++.|+++++..
T Consensus 157 l~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 236 (252)
T PRK14256 157 LCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKEKYTIIIVTHNMQQAARVSDYTAFFYMGDLVECGETKKIFT 236 (252)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCcEEEEECCHHHHHhhCCEEEEEECCEEEEeCCHHHHHh
Confidence 9999999999999999999999999999999999999877899999999999985 499999999999999999999987
Q ss_pred CCCchH
Q 001438 608 NPNSAY 613 (1077)
Q Consensus 608 ~~~~~~ 613 (1077)
.+...|
T Consensus 237 ~~~~~~ 242 (252)
T PRK14256 237 TPEKKQ 242 (252)
T ss_pred CCCcHH
Confidence 654443
|
|
| >cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-41 Score=358.46 Aligned_cols=207 Identities=27% Similarity=0.485 Sum_probs=171.2
Q ss_pred EEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHHHhhhee
Q 001438 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIG 461 (1077)
Q Consensus 382 i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 461 (1077)
|+++|+++.|++ .++++|+||++++| +++|+||||||||||+++|+|+++|++|+|.++|.++.+.+ ..+|++++
T Consensus 1 i~~~~~~~~~~~---~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~-~~~~~~i~ 75 (211)
T cd03264 1 LQLENLTKRYGK---KRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQP-QKLRRRIG 75 (211)
T ss_pred CEEEEEEEEECC---EEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCccccch-HHHHhheE
Confidence 578999999964 35899999999999 99999999999999999999999999999999999987766 67788999
Q ss_pred EEccCCCcccc-cHHHHHhcCCC--CCCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHHhccC
Q 001438 462 LVNQEPALFAT-TIRENILYGKD--DATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKN 538 (1077)
Q Consensus 462 ~v~Q~~~lf~~-ti~~ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~~~ 538 (1077)
|++|++.+|.. |++||+.+... ....++..+. .....+.+ .++ ........+||||||||++||||++.+
T Consensus 76 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~--~~~~l~~~-~l~----~~~~~~~~~LS~G~~qrv~la~al~~~ 148 (211)
T cd03264 76 YLPQEFGVYPNFTVREFLDYIAWLKGIPSKEVKAR--VDEVLELV-NLG----DRAKKKIGSLSGGMRRRVGIAQALVGD 148 (211)
T ss_pred EecCCCcccccCCHHHHHHHHHHHhCCCHHHHHHH--HHHHHHHC-CCH----HHHhCchhhCCHHHHHHHHHHHHHhcC
Confidence 99999999986 99999986421 1111111111 11111111 122 223345568999999999999999999
Q ss_pred CCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEccCchhHhh-cCEEEEEECCEEEEec
Q 001438 539 PSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTG 600 (1077)
Q Consensus 539 p~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~g 600 (1077)
|+++||||||++||+.+.+.+.+.|++..+++|+|++||+++.+.. ||++++|++|++++.|
T Consensus 149 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~g~i~~~g 211 (211)
T cd03264 149 PSILIVDEPTAGLDPEERIRFRNLLSELGEDRIVILSTHIVEDVESLCNQVAVLNKGKLVFEG 211 (211)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEecC
Confidence 9999999999999999999999999988777999999999999865 9999999999998765
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13536 nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-41 Score=377.72 Aligned_cols=217 Identities=28% Similarity=0.472 Sum_probs=181.4
Q ss_pred cEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHHHhhhe
Q 001438 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQI 460 (1077)
Q Consensus 381 ~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i 460 (1077)
.|+++|++++|++ ..+|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|+++...+ ...|+.|
T Consensus 41 ~i~i~nl~k~y~~---~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~~-~~~~~~i 116 (340)
T PRK13536 41 AIDLAGVSKSYGD---KAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARA-RLARARI 116 (340)
T ss_pred eEEEEEEEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcch-HHHhccE
Confidence 5999999999963 35999999999999999999999999999999999999999999999999987654 4678889
Q ss_pred eEEccCCCccc-ccHHHHHhcCCC--CCCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHHhcc
Q 001438 461 GLVNQEPALFA-TTIRENILYGKD--DATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVK 537 (1077)
Q Consensus 461 ~~v~Q~~~lf~-~ti~~ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~~ 537 (1077)
||+||++.++. .|++||+.+... ....++..+.+ .++.+.+ .+++..++ ...+||||||||++|||||+.
T Consensus 117 g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~--~~ll~~~-~L~~~~~~----~~~~LS~G~kqrv~lA~aL~~ 189 (340)
T PRK13536 117 GVVPQFDNLDLEFTVRENLLVFGRYFGMSTREIEAVI--PSLLEFA-RLESKADA----RVSDLSGGMKRRLTLARALIN 189 (340)
T ss_pred EEEeCCccCCCCCcHHHHHHHHHHHcCCCHHHHHHHH--HHHHHHc-CCchhhCC----ChhhCCHHHHHHHHHHHHHhc
Confidence 99999999875 499999975321 11222222211 1222322 34444444 455899999999999999999
Q ss_pred CCCEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCeEEEEccCchhHhh-cCEEEEEECCEEEEecChhHHhcC
Q 001438 538 NPSILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELISN 608 (1077)
Q Consensus 538 ~p~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 608 (1077)
+|+++||||||++||+.+++.+.+.|+++. +|+|+|++||+++.+.. ||+|++|++|+++..|+++++..+
T Consensus 190 ~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~~g~tilisSH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~~~ 262 (340)
T PRK13536 190 DPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLEAGRKIAEGRPHALIDE 262 (340)
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhh
Confidence 999999999999999999999999998874 58999999999999865 999999999999999999998753
|
|
| >PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-41 Score=370.84 Aligned_cols=221 Identities=29% Similarity=0.525 Sum_probs=181.8
Q ss_pred cEEEEeEEEEcCCCC--CcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCC----CHH
Q 001438 381 HIEFKDVSFCYPSRP--DVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGL----DLK 454 (1077)
Q Consensus 381 ~i~~~~v~~~y~~~~--~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~----~~~ 454 (1077)
.|+++|++++|++.. ..++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++... +..
T Consensus 2 ~i~~~~l~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (287)
T PRK13641 2 SIKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLK 81 (287)
T ss_pred EEEEEEEEEEcCCCCCccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 378999999997321 13589999999999999999999999999999999999999999999999998653 245
Q ss_pred HHhhheeEEccCC--CcccccHHHHHhcCCC--CCCHHHHHHHHHHHhHHHHHhcCccchh-hhhcCCCCCCChHHHHHH
Q 001438 455 WLRQQIGLVNQEP--ALFATTIRENILYGKD--DATMEEITRAAKLSEAMSFISNLPERFE-TQVGERGIQLSGGQKQRI 529 (1077)
Q Consensus 455 ~~r~~i~~v~Q~~--~lf~~ti~~ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~-t~~~~~g~~LSgGqkqri 529 (1077)
..++.++|++|+| .+|+.|++||+.++.. ....++..+. ...+ ++.+ |++ ........+||||||||+
T Consensus 82 ~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~--~~~~---l~~~--gL~~~~~~~~~~~LSgGq~qrl 154 (287)
T PRK13641 82 KLRKKVSLVFQFPEAQLFENTVLKDVEFGPKNFGFSEDEAKEK--ALKW---LKKV--GLSEDLISKSPFELSGGQMRRV 154 (287)
T ss_pred HHHhceEEEEeChhhhhccchHHHHHHHHHHHcCCCHHHHHHH--HHHH---HHHc--CCChhHhhCCcccCCHHHHHHH
Confidence 6677899999998 5777899999987532 1222222111 1122 2222 343 234566789999999999
Q ss_pred HHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCeEEEEccCchhHhh-cCEEEEEECCEEEEecChhHHhc
Q 001438 530 AISRAIVKNPSILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELIS 607 (1077)
Q Consensus 530 ~lARal~~~p~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~ 607 (1077)
+||||++.+|++|||||||++||+.+.+.+.+.|+++. +|.|+|++||+++.+.. ||++++|++|++++.|+++++..
T Consensus 155 ~laral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tvlivsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 234 (287)
T PRK13641 155 AIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMDDVAEYADDVLVLEHGKLIKHASPKEIFS 234 (287)
T ss_pred HHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 99999999999999999999999999999999998874 58999999999999864 99999999999999999998865
Q ss_pred C
Q 001438 608 N 608 (1077)
Q Consensus 608 ~ 608 (1077)
.
T Consensus 235 ~ 235 (287)
T PRK13641 235 D 235 (287)
T ss_pred C
Confidence 3
|
|
| >TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-41 Score=375.06 Aligned_cols=217 Identities=27% Similarity=0.460 Sum_probs=180.4
Q ss_pred cEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHHHhhhe
Q 001438 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQI 460 (1077)
Q Consensus 381 ~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i 460 (1077)
.|+++|++++|++ ..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++... ....|+++
T Consensus 4 ~i~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~-~~~~~~~i 79 (303)
T TIGR01288 4 AIDLVGVSKSYGD---KVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSR-ARLARVAI 79 (303)
T ss_pred EEEEEeEEEEeCC---eEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccc-HHHHhhcE
Confidence 5899999999963 3589999999999999999999999999999999999999999999999998654 35568889
Q ss_pred eEEccCCCccc-ccHHHHHhcCCC--CCCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHHhcc
Q 001438 461 GLVNQEPALFA-TTIRENILYGKD--DATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVK 537 (1077)
Q Consensus 461 ~~v~Q~~~lf~-~ti~~ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~~ 537 (1077)
||+||++.+++ .|++||+.+... ..+.++..+.+ .++.+.+ .+++. ......+||||||||++||||++.
T Consensus 80 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~--~~ll~~~-~l~~~----~~~~~~~LSgG~~qrv~la~al~~ 152 (303)
T TIGR01288 80 GVVPQFDNLDPEFTVRENLLVFGRYFGMSTREIEAVI--PSLLEFA-RLESK----ADVRVALLSGGMKRRLTLARALIN 152 (303)
T ss_pred EEEeccccCCcCCcHHHHHHHHHHHcCCCHHHHHHHH--HHHHHHC-CChhH----hcCchhhCCHHHHHHHHHHHHHhc
Confidence 99999999886 499999975221 12222222211 1222322 23333 344556899999999999999999
Q ss_pred CCCEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCeEEEEccCchhHhh-cCEEEEEECCEEEEecChhHHhcC
Q 001438 538 NPSILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELISN 608 (1077)
Q Consensus 538 ~p~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 608 (1077)
+|+++||||||++||+.+.+.+.+.|+++. +|+|+|++||+++.+.. ||+|++|++|++++.|+++++...
T Consensus 153 ~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~til~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 225 (303)
T TIGR01288 153 DPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLESGRKIAEGRPHALIDE 225 (303)
T ss_pred CCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhh
Confidence 999999999999999999999999998874 58999999999999865 999999999999999999998653
|
This model does not recognize the highly divergent NodI from Azorhizobium caulinodans. |
| >cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-41 Score=346.42 Aligned_cols=178 Identities=37% Similarity=0.643 Sum_probs=164.7
Q ss_pred EEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHHHhhhee
Q 001438 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIG 461 (1077)
Q Consensus 382 i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 461 (1077)
|+++|++++|++. +.++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++... ...+|+.++
T Consensus 1 i~~~~~~~~~~~~-~~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~-~~~~~~~i~ 78 (178)
T cd03247 1 LSINNVSFSYPEQ-EQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDL-EKALSSLIS 78 (178)
T ss_pred CEEEEEEEEeCCC-CccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHH-HHHHHhhEE
Confidence 4789999999753 23589999999999999999999999999999999999999999999999988765 566788899
Q ss_pred EEccCCCcccccHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHHhccCCCE
Q 001438 462 LVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSI 541 (1077)
Q Consensus 462 ~v~Q~~~lf~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~~~p~i 541 (1077)
|++|+|.+|+.|++||+ +.+||||||||++||||++.+|++
T Consensus 79 ~~~q~~~~~~~tv~~~i---------------------------------------~~~LS~G~~qrv~laral~~~p~~ 119 (178)
T cd03247 79 VLNQRPYLFDTTLRNNL---------------------------------------GRRFSGGERQRLALARILLQDAPI 119 (178)
T ss_pred EEccCCeeecccHHHhh---------------------------------------cccCCHHHHHHHHHHHHHhcCCCE
Confidence 99999999999999997 357999999999999999999999
Q ss_pred EEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEccCchhHhhcCEEEEEECCEEEEec
Q 001438 542 LLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRNADVIAVVQGRKIVKTG 600 (1077)
Q Consensus 542 lllDEpts~lD~~~~~~i~~~l~~~~~~~t~i~vtH~~~~~~~~d~i~~l~~G~i~~~g 600 (1077)
+||||||++||+.+.+.+.+.|+++.+++|+|++||+++.++.||++++|++|++++.|
T Consensus 120 lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~~~~l~~g~i~~~~ 178 (178)
T cd03247 120 VLLDEPTVGLDPITERQLLSLIFEVLKDKTLIWITHHLTGIEHMDKILFLENGKIIMQG 178 (178)
T ss_pred EEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHhCCEEEEEECCEEEecC
Confidence 99999999999999999999999887789999999999999889999999999998764
|
The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. |
| >PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-41 Score=371.85 Aligned_cols=223 Identities=30% Similarity=0.521 Sum_probs=182.8
Q ss_pred ccEEEEeEEEEcCCCC--CcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCC----C-C
Q 001438 380 GHIEFKDVSFCYPSRP--DVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKG----L-D 452 (1077)
Q Consensus 380 ~~i~~~~v~~~y~~~~--~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~----~-~ 452 (1077)
+.|+++|++++|+++. ..++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. . +
T Consensus 5 ~~l~i~nl~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~ 84 (289)
T PRK13645 5 KDIILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIKE 84 (289)
T ss_pred ceEEEEEEEEEeCCCCccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccccccccc
Confidence 5799999999997532 1358999999999999999999999999999999999999999999999999852 1 3
Q ss_pred HHHHhhheeEEccCC--CcccccHHHHHhcCCC--CCCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHH
Q 001438 453 LKWLRQQIGLVNQEP--ALFATTIRENILYGKD--DATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQR 528 (1077)
Q Consensus 453 ~~~~r~~i~~v~Q~~--~lf~~ti~~ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqr 528 (1077)
...+|++|+|++|+| .+|+.|++||+.++.. ....++..+. ..++.+.+ .++.+ .......+||||||||
T Consensus 85 ~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~--~~~ll~~~-~L~~~---~~~~~~~~LS~Gq~qr 158 (289)
T PRK13645 85 VKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNLGENKQEAYKK--VPELLKLV-QLPED---YVKRSPFELSGGQKRR 158 (289)
T ss_pred HHHHhccEEEEEeCcchhhhhhHHHHHHHHHHHHcCCCHHHHHHH--HHHHHHHc-CCChh---HhcCChhhCCHHHHHH
Confidence 456788899999998 4677899999987642 1222222221 12222222 33322 3456678999999999
Q ss_pred HHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh--CCCeEEEEccCchhHh-hcCEEEEEECCEEEEecChhHH
Q 001438 529 IAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVM--VGRTTVVVAHRLSTIR-NADVIAVVQGRKIVKTGSHEEL 605 (1077)
Q Consensus 529 i~lARal~~~p~illlDEpts~lD~~~~~~i~~~l~~~~--~~~t~i~vtH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l 605 (1077)
++||||++.+|++|||||||++||+.+++.+.+.|+++. .++|+|++||+++.+. .||+|++|++|++++.|+++++
T Consensus 159 v~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 238 (289)
T PRK13645 159 VALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVISIGSPFEI 238 (289)
T ss_pred HHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 999999999999999999999999999999999998874 3899999999999875 4999999999999999999988
Q ss_pred hcC
Q 001438 606 ISN 608 (1077)
Q Consensus 606 ~~~ 608 (1077)
.+.
T Consensus 239 ~~~ 241 (289)
T PRK13645 239 FSN 241 (289)
T ss_pred hcC
Confidence 654
|
|
| >PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-40 Score=361.83 Aligned_cols=217 Identities=33% Similarity=0.549 Sum_probs=182.7
Q ss_pred EEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCC--HHHHhhh
Q 001438 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLD--LKWLRQQ 459 (1077)
Q Consensus 382 i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~--~~~~r~~ 459 (1077)
++++|++++|++ .++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+ ...+|++
T Consensus 2 l~~~~l~~~~~~---~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 78 (240)
T PRK09493 2 IEFKNVSKHFGP---TQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLIRQE 78 (240)
T ss_pred EEEEeEEEEECC---eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCChhHHHHhhc
Confidence 689999999963 35899999999999999999999999999999999999999999999999987643 3567788
Q ss_pred eeEEccCCCccc-ccHHHHHhcCCC---CCCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHHh
Q 001438 460 IGLVNQEPALFA-TTIRENILYGKD---DATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAI 535 (1077)
Q Consensus 460 i~~v~Q~~~lf~-~ti~~ni~~~~~---~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal 535 (1077)
++|++|++.++. .|++||+.++.. ....++..+ + ..+.++.+ |++.....+...||||||||++||||+
T Consensus 79 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~--~---~~~~l~~~--gl~~~~~~~~~~LS~G~~qrv~la~al 151 (240)
T PRK09493 79 AGMVFQQFYLFPHLTALENVMFGPLRVRGASKEEAEK--Q---ARELLAKV--GLAERAHHYPSELSGGQQQRVAIARAL 151 (240)
T ss_pred eEEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHH--H---HHHHHHHc--CChHHHhcChhhcCHHHHHHHHHHHHH
Confidence 999999999886 499999987531 112222111 1 11223322 445555667789999999999999999
Q ss_pred ccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCeEEEEccCchhHhh-cCEEEEEECCEEEEecChhHHhcC
Q 001438 536 VKNPSILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELISN 608 (1077)
Q Consensus 536 ~~~p~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 608 (1077)
+.+|+++||||||++||+++.+.+.+.|+++. +++|+|++||+++.+.. ||++++|++|++++.|+++++.+.
T Consensus 152 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 226 (240)
T PRK09493 152 AVKPKLMLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIGFAEKVASRLIFIDKGRIAEDGDPQVLIKN 226 (240)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeeCCHHHHhcC
Confidence 99999999999999999999999999998875 58999999999999865 999999999999999999998764
|
|
| >PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-40 Score=368.25 Aligned_cols=219 Identities=29% Similarity=0.501 Sum_probs=182.7
Q ss_pred cEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHHHhhhe
Q 001438 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQI 460 (1077)
Q Consensus 381 ~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i 460 (1077)
.++++|++++|+++ ..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+...+++++
T Consensus 3 ~l~~~~l~~~~~~~--~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i 80 (277)
T PRK13652 3 LIETRDLCYSYSGS--KEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREVRKFV 80 (277)
T ss_pred eEEEEEEEEEeCCC--CceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhhe
Confidence 37899999999632 3589999999999999999999999999999999999999999999999999877777788899
Q ss_pred eEEccCCC--cccccHHHHHhcCCC--CCCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHHhc
Q 001438 461 GLVNQEPA--LFATTIRENILYGKD--DATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIV 536 (1077)
Q Consensus 461 ~~v~Q~~~--lf~~ti~~ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~ 536 (1077)
+|++|+|. +|+.|++||+.++.. ..+.++..+. ...+ ++.+ |+.......+..||||||||++|||||+
T Consensus 81 ~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~--~~~~---l~~~--~l~~~~~~~~~~LS~Gq~qrl~laraL~ 153 (277)
T PRK13652 81 GLVFQNPDDQIFSPTVEQDIAFGPINLGLDEETVAHR--VSSA---LHML--GLEELRDRVPHHLSGGEKKRVAIAGVIA 153 (277)
T ss_pred EEEecCcccccccccHHHHHHhHHHHcCCCHHHHHHH--HHHH---HHHC--CChhHhcCCcccCCHHHHHHHHHHHHHH
Confidence 99999983 677899999987532 1222221111 1111 2211 2233345566799999999999999999
Q ss_pred cCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCeEEEEccCchhHh-hcCEEEEEECCEEEEecChhHHhcC
Q 001438 537 KNPSILLLDEATSALDAESENSVQEALDRVMV--GRTTVVVAHRLSTIR-NADVIAVVQGRKIVKTGSHEELISN 608 (1077)
Q Consensus 537 ~~p~illlDEpts~lD~~~~~~i~~~l~~~~~--~~t~i~vtH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~~ 608 (1077)
.+|++|||||||++||+.+.+.+.+.++++.+ ++|+|++||+++.+. .||+|++|++|++++.|+++++.+.
T Consensus 154 ~~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~ 228 (277)
T PRK13652 154 MEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGRIVAYGTVEEIFLQ 228 (277)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEEECCHHHHhcC
Confidence 99999999999999999999999999988753 799999999999985 5999999999999999999998754
|
|
| >cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-41 Score=353.45 Aligned_cols=200 Identities=37% Similarity=0.569 Sum_probs=177.9
Q ss_pred EEEEeEEEEcCCCCC--cccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHHHhhh
Q 001438 382 IEFKDVSFCYPSRPD--VAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQ 459 (1077)
Q Consensus 382 i~~~~v~~~y~~~~~--~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~ 459 (1077)
++++||+++|++..+ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++| +
T Consensus 1 l~~~~l~~~~~~~~~~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g-------------~ 67 (204)
T cd03250 1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPG-------------S 67 (204)
T ss_pred CEEeEEEEecCCCCccccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcC-------------E
Confidence 478999999975311 3599999999999999999999999999999999999999999999999 5
Q ss_pred eeEEccCCCcccccHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHHhccCC
Q 001438 460 IGLVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNP 539 (1077)
Q Consensus 460 i~~v~Q~~~lf~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~~~p 539 (1077)
|+|++|+|.+|+.|++||+.++.. ...++..++++..++.+++..+|.|+++.+++++.+||||||||++||||++.+|
T Consensus 68 i~~~~q~~~l~~~t~~enl~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral~~~p 146 (204)
T cd03250 68 IAYVSQEPWIQNGTIRENILFGKP-FDEERYEKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDA 146 (204)
T ss_pred EEEEecCchhccCcHHHHhccCCC-cCHHHHHHHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHHHHHHHHhcCC
Confidence 999999999999999999998743 2344556666676777888899999999999999999999999999999999999
Q ss_pred CEEEEeCcCCCCCHHHHHHHHH-HHHHH-hCCCeEEEEccCchhHhhcCEEEEEECCE
Q 001438 540 SILLLDEATSALDAESENSVQE-ALDRV-MVGRTTVVVAHRLSTIRNADVIAVVQGRK 595 (1077)
Q Consensus 540 ~illlDEpts~lD~~~~~~i~~-~l~~~-~~~~t~i~vtH~~~~~~~~d~i~~l~~G~ 595 (1077)
+++||||||++||+++.+.+.+ .+++. .+++|+|++||+++.+..||++++|++|+
T Consensus 147 ~llllDEP~~~LD~~~~~~l~~~ll~~~~~~~~tvi~~sh~~~~~~~~d~i~~l~~G~ 204 (204)
T cd03250 147 DIYLLDDPLSAVDAHVGRHIFENCILGLLLNNKTRILVTHQLQLLPHADQIVVLDNGR 204 (204)
T ss_pred CEEEEeCccccCCHHHHHHHHHHHHHHhccCCCEEEEEeCCHHHHhhCCEEEEEeCCC
Confidence 9999999999999999988877 45555 34799999999999988899999999985
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-40 Score=366.74 Aligned_cols=220 Identities=32% Similarity=0.537 Sum_probs=183.8
Q ss_pred cEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHHHhhhe
Q 001438 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQI 460 (1077)
Q Consensus 381 ~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i 460 (1077)
.++++|++++|++. .+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+...+|+++
T Consensus 7 ~l~i~~l~~~~~~~-~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i 85 (269)
T PRK13648 7 IIVFKNVSFQYQSD-ASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLRKHI 85 (269)
T ss_pred eEEEEEEEEEcCCC-CCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhhe
Confidence 58999999999743 23589999999999999999999999999999999999999999999999999888878888899
Q ss_pred eEEccCCC-cc-cccHHHHHhcCCCC--CCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHHhc
Q 001438 461 GLVNQEPA-LF-ATTIRENILYGKDD--ATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIV 536 (1077)
Q Consensus 461 ~~v~Q~~~-lf-~~ti~~ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~ 536 (1077)
+|++|+|. +| ..|+++|+.++... ...++..+ +...+.+.+ |+.......+.+||||||||++||||++
T Consensus 86 ~~v~q~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~-----~l~~~~~~~~~~LS~G~~qrl~laral~ 158 (269)
T PRK13648 86 GIVFQNPDNQFVGSIVKYDVAFGLENHAVPYDEMHR--RVSEALKQV-----DMLERADYEPNALSGGQKQRVAIAGVLA 158 (269)
T ss_pred eEEEeChHHhcccccHHHHHHhhHHhcCCCHHHHHH--HHHHHHHHc-----CCchhhhCCcccCCHHHHHHHHHHHHHH
Confidence 99999995 44 45899999886421 12222211 111222222 2222344567799999999999999999
Q ss_pred cCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh--CCCeEEEEccCchhHhhcCEEEEEECCEEEEecChhHHhcC
Q 001438 537 KNPSILLLDEATSALDAESENSVQEALDRVM--VGRTTVVVAHRLSTIRNADVIAVVQGRKIVKTGSHEELISN 608 (1077)
Q Consensus 537 ~~p~illlDEpts~lD~~~~~~i~~~l~~~~--~~~t~i~vtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~ 608 (1077)
.+|+++||||||++||+.+.+.+.+.|+++. .++|+|++||+++.+..||+|++|++|++++.|+++++..+
T Consensus 159 ~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 232 (269)
T PRK13648 159 LNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLSEAMEADHVIVMNKGTVYKEGTPTEIFDH 232 (269)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCchHHhcCCEEEEEECCEEEEecCHHHHhcC
Confidence 9999999999999999999999999998874 37899999999999878999999999999999999998654
|
|
| >PRK14239 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-40 Score=364.48 Aligned_cols=224 Identities=30% Similarity=0.510 Sum_probs=182.8
Q ss_pred cEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccC--C---CccEEEECCeeCCCC--CH
Q 001438 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYE--P---LSGEILLDGNNIKGL--DL 453 (1077)
Q Consensus 381 ~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~--~---~~G~i~~~g~~~~~~--~~ 453 (1077)
.++++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++ | ++|+|.++|+++... +.
T Consensus 5 ~l~~~~l~~~~~~---~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~~ 81 (252)
T PRK14239 5 ILQVSDLSVYYNK---KKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDT 81 (252)
T ss_pred eEEEEeeEEEECC---eeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcccch
Confidence 4899999999974 358999999999999999999999999999999999853 6 499999999998643 34
Q ss_pred HHHhhheeEEccCCCcccccHHHHHhcCCC--CC-CHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHH
Q 001438 454 KWLRQQIGLVNQEPALFATTIRENILYGKD--DA-TMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIA 530 (1077)
Q Consensus 454 ~~~r~~i~~v~Q~~~lf~~ti~~ni~~~~~--~~-~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~ 530 (1077)
..+|+.++|+||++.+|+.|++||+.++.. .. ..+...+. .....+.+ .+..+..+..+..+.+||||||||++
T Consensus 82 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~--~~~~l~~~-~l~~~~~~~~~~~~~~LS~G~~qrv~ 158 (252)
T PRK14239 82 VDLRKEIGMVFQQPNPFPMSIYENVVYGLRLKGIKDKQVLDEA--VEKSLKGA-SIWDEVKDRLHDSALGLSGGQQQRVC 158 (252)
T ss_pred HhhhhcEEEEecCCccCcCcHHHHHHHHHHHcCCCcHHHHHHH--HHHHHHHc-CCchhHHHHHhcCcccCCHHHHHHHH
Confidence 567788999999999999999999987531 11 11111111 11111111 12222334556778899999999999
Q ss_pred HHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEccCchhHhh-cCEEEEEECCEEEEecChhHHhcCC
Q 001438 531 ISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELISNP 609 (1077)
Q Consensus 531 lARal~~~p~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~ 609 (1077)
||||++.+|++|||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+.. ||+|++|++|++++.|+++++.+++
T Consensus 159 laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~ 238 (252)
T PRK14239 159 IARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKDDYTMLLVTRSMQQASRISDRTGFFLDGDLIEYNDTKQMFMNP 238 (252)
T ss_pred HHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHhhCCeEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhCC
Confidence 999999999999999999999999999999999988767999999999998754 9999999999999999999987654
Q ss_pred C
Q 001438 610 N 610 (1077)
Q Consensus 610 ~ 610 (1077)
.
T Consensus 239 ~ 239 (252)
T PRK14239 239 K 239 (252)
T ss_pred C
Confidence 3
|
|
| >TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-41 Score=364.70 Aligned_cols=222 Identities=31% Similarity=0.504 Sum_probs=184.3
Q ss_pred EEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCC---------
Q 001438 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLD--------- 452 (1077)
Q Consensus 382 i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~--------- 452 (1077)
|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++..++
T Consensus 1 i~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~ 77 (252)
T TIGR03005 1 VRFSDVTKRFGI---LTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPLVPA 77 (252)
T ss_pred CEEEEEEEEeCC---eeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccccccccccccc
Confidence 578999999974 35899999999999999999999999999999999999999999999999986543
Q ss_pred ----HHHHhhheeEEccCCCccc-ccHHHHHhcCCC---CCCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChH
Q 001438 453 ----LKWLRQQIGLVNQEPALFA-TTIRENILYGKD---DATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGG 524 (1077)
Q Consensus 453 ----~~~~r~~i~~v~Q~~~lf~-~ti~~ni~~~~~---~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgG 524 (1077)
...+|+.++|++|++.+|+ .|++||+.++.. ....++..+ ...+.++.+ |++......+.+||||
T Consensus 78 ~~~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~-----~~~~~l~~~--gl~~~~~~~~~~LS~G 150 (252)
T TIGR03005 78 DEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEK-----RAMELLDMV--GLADKADHMPAQLSGG 150 (252)
T ss_pred chhHHHHHhhCeEEEecCcccCCCCcHHHHHHHHHHHhcCCCHHHHHH-----HHHHHHHHc--CChhHhhcChhhcCHH
Confidence 2356788999999999886 699999987521 112222111 112223333 4445566777899999
Q ss_pred HHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCeEEEEccCchhHh-hcCEEEEEECCEEEEecC
Q 001438 525 QKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMV--GRTTVVVAHRLSTIR-NADVIAVVQGRKIVKTGS 601 (1077)
Q Consensus 525 qkqri~lARal~~~p~illlDEpts~lD~~~~~~i~~~l~~~~~--~~t~i~vtH~~~~~~-~~d~i~~l~~G~i~~~g~ 601 (1077)
||||++||||++.+|+++||||||++||+.++..+.+.|+++.+ ++|+|++||+++.+. .||++++|++|++++.|+
T Consensus 151 ~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~ 230 (252)
T TIGR03005 151 QQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMGFAREFADRVCFFDKGRIVEQGK 230 (252)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999999999988743 899999999999985 499999999999999999
Q ss_pred hhHHhcCCCchH
Q 001438 602 HEELISNPNSAY 613 (1077)
Q Consensus 602 ~~~l~~~~~~~~ 613 (1077)
++++.+.+...+
T Consensus 231 ~~~~~~~~~~~~ 242 (252)
T TIGR03005 231 PDEIFRQPKEER 242 (252)
T ss_pred HHHHhcCCCcHH
Confidence 999976644434
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. |
| >PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-40 Score=368.31 Aligned_cols=221 Identities=29% Similarity=0.521 Sum_probs=185.2
Q ss_pred ccEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCc---cEEEECCeeCCCCCHHHH
Q 001438 380 GHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLS---GEILLDGNNIKGLDLKWL 456 (1077)
Q Consensus 380 ~~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~---G~i~~~g~~~~~~~~~~~ 456 (1077)
..|+++|++++|++. ..++++|+||+|++||+++|+||||||||||+++|+|+++|++ |+|.++|+++...+...+
T Consensus 4 ~~l~i~~l~~~~~~~-~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~~ 82 (282)
T PRK13640 4 NIVEFKHVSFTYPDS-KKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDI 82 (282)
T ss_pred ceEEEEEEEEEcCCC-CccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHHH
Confidence 368999999999643 2358999999999999999999999999999999999999998 899999999987777778
Q ss_pred hhheeEEccCCC--cccccHHHHHhcCCCC--CCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHH
Q 001438 457 RQQIGLVNQEPA--LFATTIRENILYGKDD--ATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAIS 532 (1077)
Q Consensus 457 r~~i~~v~Q~~~--lf~~ti~~ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lA 532 (1077)
++++||++|+|. +++.|++|||.++... .+.++..+.+ .+.++.+ |+.........+||||||||++||
T Consensus 83 ~~~ig~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~-----~~~l~~~--~L~~~~~~~~~~LS~G~~qrv~la 155 (282)
T PRK13640 83 REKVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIKIV-----RDVLADV--GMLDYIDSEPANLSGGQKQRVAIA 155 (282)
T ss_pred HhheEEEEECHHHhhccCCHHHHHHhhHHhCCCCHHHHHHHH-----HHHHHHC--CChhHhcCCcccCCHHHHHHHHHH
Confidence 889999999984 5577999999876422 2232221111 1112222 333445667789999999999999
Q ss_pred HHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh--CCCeEEEEccCchhHhhcCEEEEEECCEEEEecChhHHhcC
Q 001438 533 RAIVKNPSILLLDEATSALDAESENSVQEALDRVM--VGRTTVVVAHRLSTIRNADVIAVVQGRKIVKTGSHEELISN 608 (1077)
Q Consensus 533 Ral~~~p~illlDEpts~lD~~~~~~i~~~l~~~~--~~~t~i~vtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~ 608 (1077)
||++.+|+++||||||++||+.+.+.+.+.|+++. .|+|+|++||+++.+..||++++|++|++++.|+++++...
T Consensus 156 ral~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 233 (282)
T PRK13640 156 GILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDEANMADQVLVLDDGKLLAQGSPVEIFSK 233 (282)
T ss_pred HHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 99999999999999999999999999999998875 38999999999999988999999999999999999998754
|
|
| >PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-40 Score=369.78 Aligned_cols=220 Identities=30% Similarity=0.526 Sum_probs=181.8
Q ss_pred EEEEeEEEEcCCCC--CcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCC----CHHH
Q 001438 382 IEFKDVSFCYPSRP--DVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGL----DLKW 455 (1077)
Q Consensus 382 i~~~~v~~~y~~~~--~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~----~~~~ 455 (1077)
++++|++++|++.. ..++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++... +...
T Consensus 3 l~~~~l~~~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (280)
T PRK13649 3 INLQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIKQ 82 (280)
T ss_pred EEEEEEEEEcCCCCccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccCHHH
Confidence 78999999997431 13589999999999999999999999999999999999999999999999998754 3456
Q ss_pred HhhheeEEccCC--CcccccHHHHHhcCCC--CCCHHHHHHHHHHHhHHHHHhcCccchh-hhhcCCCCCCChHHHHHHH
Q 001438 456 LRQQIGLVNQEP--ALFATTIRENILYGKD--DATMEEITRAAKLSEAMSFISNLPERFE-TQVGERGIQLSGGQKQRIA 530 (1077)
Q Consensus 456 ~r~~i~~v~Q~~--~lf~~ti~~ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~-t~~~~~g~~LSgGqkqri~ 530 (1077)
+|+.|+|+||+| .+|+.|++||+.++.. ..+.++..+.+ ... ++.+ |++ ........+||||||||++
T Consensus 83 ~~~~i~~~~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~--~~~---l~~~--~l~~~~~~~~~~~LSgG~~qrv~ 155 (280)
T PRK13649 83 IRKKVGLVFQFPESQLFEETVLKDVAFGPQNFGVSQEEAEALA--REK---LALV--GISESLFEKNPFELSGGQMRRVA 155 (280)
T ss_pred HHhheEEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHH--HHH---HHHc--CCChhhhhCCcccCCHHHHHHHH
Confidence 788899999998 5788899999987532 12222222211 111 2211 232 2345667799999999999
Q ss_pred HHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCeEEEEccCchhHhh-cCEEEEEECCEEEEecChhHHhcC
Q 001438 531 ISRAIVKNPSILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELISN 608 (1077)
Q Consensus 531 lARal~~~p~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 608 (1077)
||||++.+|++|||||||++||+.+++.+.+.|+++. +++|+|++||+++.+.. ||++++|++|++++.|+++++.+.
T Consensus 156 la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 235 (280)
T PRK13649 156 IAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLMDDVANYADFVYVLEKGKLVLSGKPKDIFQD 235 (280)
T ss_pred HHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 9999999999999999999999999999999998875 47999999999998865 999999999999999999998653
|
|
| >cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-41 Score=355.89 Aligned_cols=199 Identities=33% Similarity=0.544 Sum_probs=166.4
Q ss_pred EEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHHHhhheeE
Q 001438 383 EFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIGL 462 (1077)
Q Consensus 383 ~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~ 462 (1077)
+++|++++|++. .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. ...+++++|
T Consensus 1 ~~~~l~~~~~~~--~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~---~~~~~~i~~ 75 (205)
T cd03226 1 RIENISFSYKKG--TEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKA---KERRKSIGY 75 (205)
T ss_pred CcccEEEEeCCc--CceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhh---HHhhcceEE
Confidence 468999999641 358999999999999999999999999999999999999999999999998854 456778999
Q ss_pred EccCC--CcccccHHHHHhcCCCCCC--HHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHHhccC
Q 001438 463 VNQEP--ALFATTIRENILYGKDDAT--MEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKN 538 (1077)
Q Consensus 463 v~Q~~--~lf~~ti~~ni~~~~~~~~--~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~~~ 538 (1077)
++|+| .+++.|++||+.++.+... .+++.++++.. |++........+||||||||++||||++.+
T Consensus 76 ~~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~~~LS~G~~qrv~laral~~~ 144 (205)
T cd03226 76 VMQDVDYQLFTDSVREELLLGLKELDAGNEQAETVLKDL-----------DLYALKERHPLSLSGGQKQRLAIAAALLSG 144 (205)
T ss_pred EecChhhhhhhccHHHHHhhhhhhcCccHHHHHHHHHHc-----------CCchhcCCCchhCCHHHHHHHHHHHHHHhC
Confidence 99998 4677899999988643221 12222222222 222234455668999999999999999999
Q ss_pred CCEEEEeCcCCCCCHHHHHHHHHHHHHH-hCCCeEEEEccCchhHhh-cCEEEEEECCEEE
Q 001438 539 PSILLLDEATSALDAESENSVQEALDRV-MVGRTTVVVAHRLSTIRN-ADVIAVVQGRKIV 597 (1077)
Q Consensus 539 p~illlDEpts~lD~~~~~~i~~~l~~~-~~~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~ 597 (1077)
|+++||||||++||+.+.+.+.+.|+++ .+++|+|++||+++.+.. ||++++|++|+++
T Consensus 145 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~iv 205 (205)
T cd03226 145 KDLLIFDEPTSGLDYKNMERVGELIRELAAQGKAVIVITHDYEFLAKVCDRVLLLANGAIV 205 (205)
T ss_pred CCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEC
Confidence 9999999999999999999999999887 468999999999999875 9999999999974
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >PRK14270 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-40 Score=361.99 Aligned_cols=225 Identities=30% Similarity=0.489 Sum_probs=184.4
Q ss_pred ccEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCC-----CccEEEECCeeCCCC--C
Q 001438 380 GHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEP-----LSGEILLDGNNIKGL--D 452 (1077)
Q Consensus 380 ~~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~-----~~G~i~~~g~~~~~~--~ 452 (1077)
..++++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.++... +
T Consensus 3 ~~l~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~ 79 (251)
T PRK14270 3 IKMESKNLNLWYGE---KQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVD 79 (251)
T ss_pred cEEEEEEeEEEECC---eeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEeccccccc
Confidence 35899999999963 3589999999999999999999999999999999999875 799999999998653 3
Q ss_pred HHHHhhheeEEccCCCcccccHHHHHhcCCCC--C-CHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHH
Q 001438 453 LKWLRQQIGLVNQEPALFATTIRENILYGKDD--A-TMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRI 529 (1077)
Q Consensus 453 ~~~~r~~i~~v~Q~~~lf~~ti~~ni~~~~~~--~-~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri 529 (1077)
....|+.++|+||++.+|+.|++||+.++... . +.++..+ +...+.+.+ .+.+++..........||||||||+
T Consensus 80 ~~~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~--~~~~~l~~~-~l~~~~~~~~~~~~~~LS~G~~qrv 156 (251)
T PRK14270 80 VVELRKRVGMVFQKPNPFPMSIYDNVAYGPRIHGIKDKKELDK--IVEWALKKA-ALWDEVKDDLKKSALKLSGGQQQRL 156 (251)
T ss_pred HHHHHhheEEEecCCCcCCCcHHHHHHhHHHhcCCCcHHHHHH--HHHHHHHHc-CCchhhhhHhhCCcccCCHHHHHHH
Confidence 45667889999999999999999999875321 1 1111111 111122211 2222233345667789999999999
Q ss_pred HHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEccCchhHhh-cCEEEEEECCEEEEecChhHHhcC
Q 001438 530 AISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELISN 608 (1077)
Q Consensus 530 ~lARal~~~p~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 608 (1077)
+||||++.+|+++||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+.. ||++++|++|++++.|+++++..+
T Consensus 157 ~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~ 236 (251)
T PRK14270 157 CIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKKEYTIVIVTHNMQQASRVSDYTAFFLMGDLIEFNKTEKIFLE 236 (251)
T ss_pred HHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEEcCHHHHHHhcCEEEEEECCeEEEeCCHHHHhcC
Confidence 9999999999999999999999999999999999988777999999999999865 999999999999999999998765
Q ss_pred CC
Q 001438 609 PN 610 (1077)
Q Consensus 609 ~~ 610 (1077)
+.
T Consensus 237 ~~ 238 (251)
T PRK14270 237 PQ 238 (251)
T ss_pred CC
Confidence 43
|
|
| >PRK14253 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-40 Score=361.79 Aligned_cols=224 Identities=29% Similarity=0.517 Sum_probs=184.5
Q ss_pred cEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCC-----CccEEEECCeeCC-CCCHH
Q 001438 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEP-----LSGEILLDGNNIK-GLDLK 454 (1077)
Q Consensus 381 ~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~-----~~G~i~~~g~~~~-~~~~~ 454 (1077)
.++++|+++.|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.++. ..+..
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~ 79 (249)
T PRK14253 3 KFNIENLDLFYGE---NQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVA 79 (249)
T ss_pred eEEEeccEEEECC---eeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccchH
Confidence 4889999999973 3589999999999999999999999999999999999986 5999999999985 34566
Q ss_pred HHhhheeEEccCCCcccccHHHHHhcCCCC--CC-HHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHH
Q 001438 455 WLRQQIGLVNQEPALFATTIRENILYGKDD--AT-MEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAI 531 (1077)
Q Consensus 455 ~~r~~i~~v~Q~~~lf~~ti~~ni~~~~~~--~~-~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~l 531 (1077)
.+|+.++|++|++.+|+.|++||+.++... .. .+...+. .....+.+ .+.+++.+.....+.+||||||||++|
T Consensus 80 ~~~~~i~~~~q~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~-~l~~~~~~~~~~~~~~LS~G~~qrv~l 156 (249)
T PRK14253 80 DLRIKVGMVFQKPNPFPMSIYENVAYGLRAQGIKDKKVLDEV--VERSLRGA-ALWDEVKDRLKSHAFGLSGGQQQRLCI 156 (249)
T ss_pred HHHhheeEEecCCCcCcccHHHHHHhHHHhcCCCchHHHHHH--HHHHHHHc-CCchhhhHHhhcCcccCCHHHHHHHHH
Confidence 778899999999999999999999876321 11 1111111 11111111 222233345566778999999999999
Q ss_pred HHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEccCchhHhh-cCEEEEEECCEEEEecChhHHhcCCC
Q 001438 532 SRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELISNPN 610 (1077)
Q Consensus 532 ARal~~~p~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~~ 610 (1077)
|||++.+|+++||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+.. ||++++|++|++++.|+++++..++.
T Consensus 157 aral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~~ 236 (249)
T PRK14253 157 ARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKKNYTIVIVTHSMQQARRISDRTAFFLMGELVEHDDTQVIFSNPK 236 (249)
T ss_pred HHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHHcCCC
Confidence 99999999999999999999999999999999998777999999999999876 99999999999999999998865433
|
|
| >cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-41 Score=354.52 Aligned_cols=203 Identities=27% Similarity=0.457 Sum_probs=171.6
Q ss_pred EEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHHHhhhee
Q 001438 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIG 461 (1077)
Q Consensus 382 i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 461 (1077)
|+++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++... ..++++++
T Consensus 1 l~~~~l~~~~~~---~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~--~~~~~~i~ 75 (208)
T cd03268 1 LKTNDLTKTYGK---KRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKN--IEALRRIG 75 (208)
T ss_pred CEEEEEEEEECC---eEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccch--HHHHhhEE
Confidence 478999999963 3699999999999999999999999999999999999999999999999988654 45677899
Q ss_pred EEccCCCccc-ccHHHHHhcCCC--CCCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHHhccC
Q 001438 462 LVNQEPALFA-TTIRENILYGKD--DATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKN 538 (1077)
Q Consensus 462 ~v~Q~~~lf~-~ti~~ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~~~ 538 (1077)
|+||++.+++ .|++||+.++.. ....+++.++++..+ ++......+.+||||||||++||||++.+
T Consensus 76 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~-----------l~~~~~~~~~~LS~G~~qrv~la~al~~~ 144 (208)
T cd03268 76 ALIEAPGFYPNLTARENLRLLARLLGIRKKRIDEVLDVVG-----------LKDSAKKKVKGFSLGMKQRLGIALALLGN 144 (208)
T ss_pred EecCCCccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHcC-----------CHHHHhhhHhhCCHHHHHHHHHHHHHhcC
Confidence 9999998885 599999987532 122233333333322 22334455678999999999999999999
Q ss_pred CCEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCeEEEEccCchhHhh-cCEEEEEECCEEEEec
Q 001438 539 PSILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTG 600 (1077)
Q Consensus 539 p~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~g 600 (1077)
|+++||||||++||+.+.+.+.+.|++.. +++|+|++||+++.+.. ||++++|++|++++.|
T Consensus 145 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~g~i~~~g 208 (208)
T cd03268 145 PDLLILDEPTNGLDPDGIKELRELILSLRDQGITVLISSHLLSEIQKVADRIGIINKGKLIEEG 208 (208)
T ss_pred CCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEECCEEEecC
Confidence 99999999999999999999999998875 58999999999999865 9999999999998765
|
Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. |
| >PRK14244 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-40 Score=362.75 Aligned_cols=226 Identities=30% Similarity=0.538 Sum_probs=183.4
Q ss_pred EEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccC-----CCccEEEECCeeCCCCC--HH
Q 001438 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYE-----PLSGEILLDGNNIKGLD--LK 454 (1077)
Q Consensus 382 i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~-----~~~G~i~~~g~~~~~~~--~~ 454 (1077)
-+++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|+++...+ ..
T Consensus 6 ~~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 82 (251)
T PRK14244 6 ASVKNLNLWYGS---KQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVV 82 (251)
T ss_pred EEeeeEEEEECC---eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccchH
Confidence 478999999963 358999999999999999999999999999999999986 47999999999886543 33
Q ss_pred HHhhheeEEccCCCcccccHHHHHhcCCC--CC--CHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHH
Q 001438 455 WLRQQIGLVNQEPALFATTIRENILYGKD--DA--TMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIA 530 (1077)
Q Consensus 455 ~~r~~i~~v~Q~~~lf~~ti~~ni~~~~~--~~--~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~ 530 (1077)
.+|++++|+||++.+|+.|++||+.++.. .. ..++..+ ....+.+.+ .+.+.+.+.++..+.+||||||||++
T Consensus 83 ~~~~~i~~v~q~~~~~~~tv~~ni~~~~~~~~~~~~~~~~~~--~~~~~l~~~-~l~~~~~~~~~~~~~~LS~Gq~qrv~ 159 (251)
T PRK14244 83 LLRAKVGMVFQKPNPFPKSIYDNVAYGPKLHGLAKNKKKLDE--IVEKSLTSV-GLWEELGDRLKDSAFELSGGQQQRLC 159 (251)
T ss_pred HHhhhEEEEecCcccccCCHHHHHHHHHHhcCCCCCHHHHHH--HHHHHHHHc-CCCchhhhHhhcChhhCCHHHHHHHH
Confidence 56788999999999999999999987521 11 1111111 111122211 12222233456677899999999999
Q ss_pred HHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEccCchhHhh-cCEEEEEECCEEEEecChhHHhcCC
Q 001438 531 ISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELISNP 609 (1077)
Q Consensus 531 lARal~~~p~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~ 609 (1077)
||||++.+|+++||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+.. ||+|++|++|++++.|+++++.+.+
T Consensus 160 laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~ 239 (251)
T PRK14244 160 IARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELKKNFTIIVVTHSMKQAKKVSDRVAFFQSGRIVEYNTTQEIFKNP 239 (251)
T ss_pred HHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhcCEEEEEECCEEEEeCCHHHHhcCC
Confidence 999999999999999999999999999999999988778999999999999865 9999999999999999999998764
Q ss_pred CchH
Q 001438 610 NSAY 613 (1077)
Q Consensus 610 ~~~~ 613 (1077)
...+
T Consensus 240 ~~~~ 243 (251)
T PRK14244 240 QSSK 243 (251)
T ss_pred CChH
Confidence 4433
|
|
| >TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-40 Score=360.39 Aligned_cols=219 Identities=23% Similarity=0.412 Sum_probs=183.3
Q ss_pred cEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHHH-hhh
Q 001438 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWL-RQQ 459 (1077)
Q Consensus 381 ~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~-r~~ 459 (1077)
.|+++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+.... ++.
T Consensus 2 ~i~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~ 78 (242)
T TIGR03411 2 ILYLEGLSVSFDG---FKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIARAG 78 (242)
T ss_pred eEEEEeeEEEcCC---eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCeecCCCCHHHHHhcC
Confidence 3789999999964 358999999999999999999999999999999999999999999999999887766543 457
Q ss_pred eeEEccCCCcccc-cHHHHHhcCCCCCC--------HHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHH
Q 001438 460 IGLVNQEPALFAT-TIRENILYGKDDAT--------MEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIA 530 (1077)
Q Consensus 460 i~~v~Q~~~lf~~-ti~~ni~~~~~~~~--------~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~ 530 (1077)
++|++|++.+|++ |++||+.++..... ........+ ..+.++.+ |++........+||||||||++
T Consensus 79 i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~~~--~l~~~~~~~~~~LS~Ge~qrv~ 153 (242)
T TIGR03411 79 IGRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDR---IEEVLETI--GLADEADRLAGLLSHGQKQWLE 153 (242)
T ss_pred eeEeccccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHH---HHHHHHHc--CCchhhcCChhhCCHHHHHHHH
Confidence 9999999999987 99999987532100 000001111 12223322 3444556677899999999999
Q ss_pred HHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEccCchhHhh-cCEEEEEECCEEEEecChhHHhc
Q 001438 531 ISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELIS 607 (1077)
Q Consensus 531 lARal~~~p~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~ 607 (1077)
||||++.+|+++||||||++||+.+++.+.+.|+++.+++|+|++||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 154 laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~~~~~~~~~~~~~ 231 (242)
T TIGR03411 154 IGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAGKHSVVVVEHDMEFVRSIADKVTVLHQGSVLAEGSLDQVQA 231 (242)
T ss_pred HHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCeEEeeCCHHHHhc
Confidence 999999999999999999999999999999999988778999999999999875 99999999999999999999864
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-41 Score=356.11 Aligned_cols=207 Identities=35% Similarity=0.566 Sum_probs=171.9
Q ss_pred EEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHHHhhhee
Q 001438 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIG 461 (1077)
Q Consensus 382 i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 461 (1077)
|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+.. +++++
T Consensus 1 i~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~~~~~~--~~~i~ 75 (213)
T cd03301 1 VELENVTKRFGN---VTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPK--DRDIA 75 (213)
T ss_pred CEEEeeEEEECC---eeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCcc--cceEE
Confidence 478999999974 3589999999999999999999999999999999999999999999999998765432 46799
Q ss_pred EEccCCCccc-ccHHHHHhcCCCC--CCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHHhccC
Q 001438 462 LVNQEPALFA-TTIRENILYGKDD--ATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKN 538 (1077)
Q Consensus 462 ~v~Q~~~lf~-~ti~~ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~~~ 538 (1077)
|++|++.+|+ .|++||+.++... ...++..+.+ . +.++.+ |++........+||||||||++||||++.+
T Consensus 76 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~--~---~~l~~~--~l~~~~~~~~~~LS~G~~qr~~laral~~~ 148 (213)
T cd03301 76 MVFQNYALYPHMTVYDNIAFGLKLRKVPKDEIDERV--R---EVAELL--QIEHLLDRKPKQLSGGQRQRVALGRAIVRE 148 (213)
T ss_pred EEecChhhccCCCHHHHHHHHHHhcCCCHHHHHHHH--H---HHHHHc--CCHHHHhCChhhCCHHHHHHHHHHHHHhcC
Confidence 9999999986 4999999875321 1222221111 1 112222 344445667789999999999999999999
Q ss_pred CCEEEEeCcCCCCCHHHHHHHHHHHHHHh--CCCeEEEEccCchhHhh-cCEEEEEECCEEEEec
Q 001438 539 PSILLLDEATSALDAESENSVQEALDRVM--VGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTG 600 (1077)
Q Consensus 539 p~illlDEpts~lD~~~~~~i~~~l~~~~--~~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~g 600 (1077)
|+++||||||++||+.+.+.+.+.|+++. .++|+|++||+++.+.. ||+|++|++|++++.|
T Consensus 149 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~g~~~~~g 213 (213)
T cd03301 149 PKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQVEAMTMADRIAVMNDGQIQQIG 213 (213)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEecC
Confidence 99999999999999999999999998874 38999999999998875 9999999999999875
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. |
| >PRK14271 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-40 Score=365.30 Aligned_cols=225 Identities=27% Similarity=0.502 Sum_probs=187.5
Q ss_pred ccEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCC-----CccEEEECCeeCCCCC-H
Q 001438 380 GHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEP-----LSGEILLDGNNIKGLD-L 453 (1077)
Q Consensus 380 ~~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~-----~~G~i~~~g~~~~~~~-~ 453 (1077)
..++++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.++.+.+ .
T Consensus 20 ~~l~i~nl~~~~~~---~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~ 96 (276)
T PRK14271 20 PAMAAVNLTLGFAG---KTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDV 96 (276)
T ss_pred cEEEEeeEEEEECC---EEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccchh
Confidence 35899999999974 3689999999999999999999999999999999999986 7999999999987653 3
Q ss_pred HHHhhheeEEccCCCcccccHHHHHhcCCC---CCCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHH
Q 001438 454 KWLRQQIGLVNQEPALFATTIRENILYGKD---DATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIA 530 (1077)
Q Consensus 454 ~~~r~~i~~v~Q~~~lf~~ti~~ni~~~~~---~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~ 530 (1077)
..+|++++|++|++.+|+.|++||+.++.. ..+.++..+.. ....+.+ .+++.+.+.....+.+||||||||++
T Consensus 97 ~~~~~~i~~v~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~--~~~l~~~-~l~~~~~~~l~~~~~~LSgGq~qrl~ 173 (276)
T PRK14271 97 LEFRRRVGMLFQRPNPFPMSIMDNVLAGVRAHKLVPRKEFRGVA--QARLTEV-GLWDAVKDRLSDSPFRLSGGQQQLLC 173 (276)
T ss_pred HHHhhheEEeccCCccCCccHHHHHHHHHHhccCCCHHHHHHHH--HHHHHHc-CCCchhhhHhhCCcccCCHHHHHHHH
Confidence 567889999999999999999999987632 12333322211 1111212 23333334566778899999999999
Q ss_pred HHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEccCchhHhh-cCEEEEEECCEEEEecChhHHhcCC
Q 001438 531 ISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELISNP 609 (1077)
Q Consensus 531 lARal~~~p~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~ 609 (1077)
||||++.+|+++||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+.. ||++++|++|++++.|+++++.+.+
T Consensus 174 LAral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~~ 253 (276)
T PRK14271 174 LARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLADRLTVIIVTHNLAQAARISDRAALFFDGRLVEEGPTEQLFSSP 253 (276)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhCc
Confidence 999999999999999999999999999999999988667899999999998765 9999999999999999999998754
Q ss_pred C
Q 001438 610 N 610 (1077)
Q Consensus 610 ~ 610 (1077)
.
T Consensus 254 ~ 254 (276)
T PRK14271 254 K 254 (276)
T ss_pred C
Confidence 3
|
|
| >PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-40 Score=361.07 Aligned_cols=217 Identities=23% Similarity=0.433 Sum_probs=182.8
Q ss_pred cEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHH-Hhhh
Q 001438 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKW-LRQQ 459 (1077)
Q Consensus 381 ~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~-~r~~ 459 (1077)
.++++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+... .|+.
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 79 (241)
T PRK10895 3 TLTAKNLAKAYKG---RRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRG 79 (241)
T ss_pred eEEEeCcEEEeCC---EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHHhC
Confidence 3789999999963 35999999999999999999999999999999999999999999999999998776544 5678
Q ss_pred eeEEccCCCcccc-cHHHHHhcCCCC---CCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHHh
Q 001438 460 IGLVNQEPALFAT-TIRENILYGKDD---ATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAI 535 (1077)
Q Consensus 460 i~~v~Q~~~lf~~-ti~~ni~~~~~~---~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal 535 (1077)
++|+||++.+|+. |++||+.++... .+.++.. ....+.++.+ |++........+||||||||++||||+
T Consensus 80 i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~laral 152 (241)
T PRK10895 80 IGYLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQRE-----DRANELMEEF--HIEHLRDSMGQSLSGGERRRVEIARAL 152 (241)
T ss_pred eEEeccCCcccccCcHHHHHhhhhhcccccCHHHHH-----HHHHHHHHHc--CCHHHhhcchhhCCHHHHHHHHHHHHH
Confidence 9999999999875 999999875321 1111111 1122233333 444556677789999999999999999
Q ss_pred ccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCeEEEEccCchhHhh-cCEEEEEECCEEEEecChhHHhc
Q 001438 536 VKNPSILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELIS 607 (1077)
Q Consensus 536 ~~~p~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~ 607 (1077)
+.+|++|||||||++||+.+.+.+.+.++++. +++|+|++||+++.+.. ||++++|++|++++.|+++++..
T Consensus 153 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~ 226 (241)
T PRK10895 153 AANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVRETLAVCERAYIVSQGHLIAHGTPTEILQ 226 (241)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEEeCCeEEeeCCHHHHhc
Confidence 99999999999999999999999999998765 58999999999987755 99999999999999999999865
|
|
| >PRK14262 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-40 Score=361.74 Aligned_cols=228 Identities=29% Similarity=0.508 Sum_probs=184.2
Q ss_pred cEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCC-----CccEEEECCeeCCCC--CH
Q 001438 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEP-----LSGEILLDGNNIKGL--DL 453 (1077)
Q Consensus 381 ~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~-----~~G~i~~~g~~~~~~--~~ 453 (1077)
.|+++|+++.|++ .++|+|+||++++||+++|+||||||||||+++|+|+++| ++|+|.++|.++... +.
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~~ 79 (250)
T PRK14262 3 IIEIENFSAYYGE---KKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDV 79 (250)
T ss_pred eEEEEeeEEEeCC---ceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchhhH
Confidence 4899999999963 3589999999999999999999999999999999999984 899999999998653 33
Q ss_pred HHHhhheeEEccCCCcccccHHHHHhcCCCC---CCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHH
Q 001438 454 KWLRQQIGLVNQEPALFATTIRENILYGKDD---ATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIA 530 (1077)
Q Consensus 454 ~~~r~~i~~v~Q~~~lf~~ti~~ni~~~~~~---~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~ 530 (1077)
..+++.++|++|++.+|+.|++||+.++... ...++..+.. ....+.+ .+.+..++..+.++.+||||||||++
T Consensus 80 ~~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~--~~~l~~~-~l~~~~~~~~~~~~~~LS~Gq~qr~~ 156 (250)
T PRK14262 80 TEYRKKVGMVFQKPTPFPMSIYDNVAFGPRIHGVKSKHKLDRIV--EESLKKA-ALWDEVKSELNKPGTRLSGGQQQRLC 156 (250)
T ss_pred HHhhhhEEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHH--HHHHHHc-CCCchhHHHHhCChhhcCHHHHHHHH
Confidence 4567889999999999999999999875311 1111111111 1111111 12112233456778899999999999
Q ss_pred HHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEccCchhHh-hcCEEEEEECCEEEEecChhHHhcCC
Q 001438 531 ISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIR-NADVIAVVQGRKIVKTGSHEELISNP 609 (1077)
Q Consensus 531 lARal~~~p~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~vtH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~~~ 609 (1077)
||||++.+|+++||||||++||+.+...+.+.|+++.+++|+|++||+++.+. .||+|++|++|++++.|+++++.+++
T Consensus 157 la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tili~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~ 236 (250)
T PRK14262 157 IARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSENYTIVIVTHNIGQAIRIADYIAFMYRGELIEYGPTREIVERP 236 (250)
T ss_pred HHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHHhCC
Confidence 99999999999999999999999999999999998877899999999999875 49999999999999999999987653
Q ss_pred CchHH
Q 001438 610 NSAYA 614 (1077)
Q Consensus 610 ~~~~~ 614 (1077)
...+.
T Consensus 237 ~~~~~ 241 (250)
T PRK14262 237 KNKLT 241 (250)
T ss_pred CChHH
Confidence 33333
|
|
| >PRK13633 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-40 Score=367.13 Aligned_cols=221 Identities=28% Similarity=0.492 Sum_probs=183.5
Q ss_pred cEEEEeEEEEcCCCC---CcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCC-HHHH
Q 001438 381 HIEFKDVSFCYPSRP---DVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLD-LKWL 456 (1077)
Q Consensus 381 ~i~~~~v~~~y~~~~---~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~-~~~~ 456 (1077)
.++++|++++|++.. .+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.. ...+
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~ 83 (280)
T PRK13633 4 MIKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENLWDI 83 (280)
T ss_pred eEEEeeeEEEcCCCCCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeccccccHHHH
Confidence 589999999997431 246999999999999999999999999999999999999999999999999987653 3567
Q ss_pred hhheeEEccCCC--cccccHHHHHhcCCCC--CCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHH
Q 001438 457 RQQIGLVNQEPA--LFATTIRENILYGKDD--ATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAIS 532 (1077)
Q Consensus 457 r~~i~~v~Q~~~--lf~~ti~~ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lA 532 (1077)
|++++|+||+|. ++..|+.||+.++... ....+..+. ...+ ++.+ |+.........+||||||||++||
T Consensus 84 ~~~i~~v~q~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~--~~~~---l~~~--gL~~~~~~~~~~LS~G~~qrv~la 156 (280)
T PRK13633 84 RNKAGMVFQNPDNQIVATIVEEDVAFGPENLGIPPEEIRER--VDES---LKKV--GMYEYRRHAPHLLSGGQKQRVAIA 156 (280)
T ss_pred hhheEEEecChhhhhccccHHHHHHhhHhhcCCCHHHHHHH--HHHH---HHHC--CCHhHhhCCcccCCHHHHHHHHHH
Confidence 889999999984 6667999999886421 122222111 1111 1111 334445556779999999999999
Q ss_pred HHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh--CCCeEEEEccCchhHhhcCEEEEEECCEEEEecChhHHhcC
Q 001438 533 RAIVKNPSILLLDEATSALDAESENSVQEALDRVM--VGRTTVVVAHRLSTIRNADVIAVVQGRKIVKTGSHEELISN 608 (1077)
Q Consensus 533 Ral~~~p~illlDEpts~lD~~~~~~i~~~l~~~~--~~~t~i~vtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~ 608 (1077)
||++.+|+++||||||++||+.+.+.+.+.|+++. .++|+|++||+++.+..||++++|++|++++.|+++++..+
T Consensus 157 ral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 234 (280)
T PRK13633 157 GILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYMEEAVEADRIIVMDSGKVVMEGTPKEIFKE 234 (280)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChHHHhcCCEEEEEECCEEEEecCHHHHhcC
Confidence 99999999999999999999999999999999874 38999999999999888999999999999999999998764
|
|
| >TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-40 Score=371.97 Aligned_cols=216 Identities=22% Similarity=0.420 Sum_probs=183.2
Q ss_pred EEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHHHhhhee
Q 001438 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIG 461 (1077)
Q Consensus 382 i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 461 (1077)
++++|++++|++ ..+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. +...+|+++|
T Consensus 3 l~~~~l~~~~~~---~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~~~~-~~~~~~~~ig 78 (301)
T TIGR03522 3 IRVSSLTKLYGT---QNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQ-NPKEVQRNIG 78 (301)
T ss_pred EEEEEEEEEECC---EEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccc-ChHHHHhceE
Confidence 789999999963 469999999999999999999999999999999999999999999999999876 3456788999
Q ss_pred EEccCCCcccc-cHHHHHhcCCCC--CCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHHhccC
Q 001438 462 LVNQEPALFAT-TIRENILYGKDD--ATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKN 538 (1077)
Q Consensus 462 ~v~Q~~~lf~~-ti~~ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~~~ 538 (1077)
|+||++.+|+. |++||+.+.... ...++..+.+ ..+ ++.+ |++........+||||||||++||||++.+
T Consensus 79 ~~~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~--~~~---l~~~--gl~~~~~~~~~~LS~G~~qrv~la~al~~~ 151 (301)
T TIGR03522 79 YLPEHNPLYLDMYVREYLQFIAGIYGMKGQLLKQRV--EEM---IELV--GLRPEQHKKIGQLSKGYRQRVGLAQALIHD 151 (301)
T ss_pred EecCCCCCCCCCcHHHHHHHHHHHcCCCHHHHHHHH--HHH---HHHC--CCchHhcCchhhCCHHHHHHHHHHHHHhcC
Confidence 99999999976 999999764311 1222211111 112 2222 344455667789999999999999999999
Q ss_pred CCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEccCchhHhh-cCEEEEEECCEEEEecChhHHhcC
Q 001438 539 PSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELISN 608 (1077)
Q Consensus 539 p~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 608 (1077)
|+++||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+.. ||||++|++|+++..|+++++...
T Consensus 152 p~lliLDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sH~l~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 222 (301)
T TIGR03522 152 PKVLILDEPTTGLDPNQLVEIRNVIKNIGKDKTIILSTHIMQEVEAICDRVIIINKGKIVADKKLDELSAA 222 (301)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHHh
Confidence 9999999999999999999999999998778999999999998876 999999999999999999998653
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. |
| >PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-40 Score=366.00 Aligned_cols=217 Identities=29% Similarity=0.464 Sum_probs=178.5
Q ss_pred EEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCC--CCCHHHHhhh
Q 001438 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIK--GLDLKWLRQQ 459 (1077)
Q Consensus 382 i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~--~~~~~~~r~~ 459 (1077)
++++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++. +.+...+|++
T Consensus 2 l~~~~l~~~~~~---~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~ 78 (271)
T PRK13638 2 LATSDLWFRYQD---EPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLALRQQ 78 (271)
T ss_pred eEEEEEEEEcCC---cccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCccEEEECCEEcccccCCHHHHHhh
Confidence 689999999963 35899999999999999999999999999999999999999999999999985 3344567888
Q ss_pred eeEEccCCC--cccccHHHHHhcCCC--CCCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHHh
Q 001438 460 IGLVNQEPA--LFATTIRENILYGKD--DATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAI 535 (1077)
Q Consensus 460 i~~v~Q~~~--lf~~ti~~ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal 535 (1077)
++|++|++. ++..|+.||+.++.. ....++..+. .....+.+ |+.........+||||||||++|||||
T Consensus 79 i~~v~q~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~--~~~~l~~~-----~l~~~~~~~~~~LSgG~~qrl~laraL 151 (271)
T PRK13638 79 VATVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITRR--VDEALTLV-----DAQHFRHQPIQCLSHGQKKRVAIAGAL 151 (271)
T ss_pred eEEEeeChhhccccccHHHHHHHHHHHcCCCHHHHHHH--HHHHHHHc-----CCHhHhcCCchhCCHHHHHHHHHHHHH
Confidence 999999986 566789999987421 1122222111 11122211 222233456678999999999999999
Q ss_pred ccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCeEEEEccCchhHhh-cCEEEEEECCEEEEecChhHHhcC
Q 001438 536 VKNPSILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELISN 608 (1077)
Q Consensus 536 ~~~p~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 608 (1077)
+.+|+++||||||++||+.+.+.+.+.|+++. +++|+|++||+++.+.. ||++++|++|++++.|+++++...
T Consensus 152 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 226 (271)
T PRK13638 152 VLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDIDLIYEISDAVYVLRQGQILTHGAPGEVFAC 226 (271)
T ss_pred HcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 99999999999999999999999999998874 58999999999999865 999999999999999999998754
|
|
| >PRK14243 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-40 Score=362.18 Aligned_cols=222 Identities=29% Similarity=0.507 Sum_probs=184.3
Q ss_pred cEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccC-----CCccEEEECCeeCCC--CCH
Q 001438 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYE-----PLSGEILLDGNNIKG--LDL 453 (1077)
Q Consensus 381 ~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~-----~~~G~i~~~g~~~~~--~~~ 453 (1077)
.|+++||+++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|+++.. .+.
T Consensus 10 ~l~i~~v~~~~~~---~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 86 (264)
T PRK14243 10 VLRTENLNVYYGS---FLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDP 86 (264)
T ss_pred EEEEeeeEEEECC---EEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccccccCh
Confidence 5899999999964 358999999999999999999999999999999999986 479999999998853 345
Q ss_pred HHHhhheeEEccCCCcccccHHHHHhcCCCCC--CH---HHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHH
Q 001438 454 KWLRQQIGLVNQEPALFATTIRENILYGKDDA--TM---EEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQR 528 (1077)
Q Consensus 454 ~~~r~~i~~v~Q~~~lf~~ti~~ni~~~~~~~--~~---~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqr 528 (1077)
..+|++++|++|++.+|+.|++||+.++.... .. +++.++++..++. ++++...+..+.+||||||||
T Consensus 87 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~-------~~l~~~~~~~~~~LSgGq~qr 159 (264)
T PRK14243 87 VEVRRRIGMVFQKPNPFPKSIYDNIAYGARINGYKGDMDELVERSLRQAALW-------DEVKDKLKQSGLSLSGGQQQR 159 (264)
T ss_pred HHHhhhEEEEccCCccccccHHHHHHhhhhhcCcchHHHHHHHHHHHHhCch-------hhHHHHhcCCcccCCHHHHHH
Confidence 66788999999999999889999998764211 11 1112222222221 122233566778999999999
Q ss_pred HHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEccCchhHhh-cCEEEEEE---------CCEEEE
Q 001438 529 IAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRN-ADVIAVVQ---------GRKIVK 598 (1077)
Q Consensus 529 i~lARal~~~p~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~vtH~~~~~~~-~d~i~~l~---------~G~i~~ 598 (1077)
++||||++.+|++|||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+.. ||+|++|+ +|++++
T Consensus 160 v~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tvi~vtH~~~~~~~~~d~v~~l~~~~~~~~~~~g~i~~ 239 (264)
T PRK14243 160 LCIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKEQYTIIIVTHNMQQAARVSDMTAFFNVELTEGGGRYGYLVE 239 (264)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEecccccccccCceEEE
Confidence 99999999999999999999999999999999999988777899999999998865 99999999 899999
Q ss_pred ecChhHHhcCCCch
Q 001438 599 TGSHEELISNPNSA 612 (1077)
Q Consensus 599 ~g~~~~l~~~~~~~ 612 (1077)
.|+++|+.+++...
T Consensus 240 ~~~~~~~~~~~~~~ 253 (264)
T PRK14243 240 FDRTEKIFNSPQQQ 253 (264)
T ss_pred eCCHHHHHhCCCcH
Confidence 99999998654433
|
|
| >PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-40 Score=365.17 Aligned_cols=214 Identities=29% Similarity=0.467 Sum_probs=181.5
Q ss_pred ccEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHHHhhh
Q 001438 380 GHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQ 459 (1077)
Q Consensus 380 ~~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~ 459 (1077)
..++++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+...+|+.
T Consensus 10 ~~l~i~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~ 86 (265)
T PRK10575 10 TTFALRNVSFRVPG---RTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFARK 86 (265)
T ss_pred ceEEEeeEEEEECC---EEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEehhhCCHHHHhhh
Confidence 35899999999963 358999999999999999999999999999999999999999999999999988777888889
Q ss_pred eeEEccCCCcccc-cHHHHHhcCCCCC-------CH---HHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHH
Q 001438 460 IGLVNQEPALFAT-TIRENILYGKDDA-------TM---EEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQR 528 (1077)
Q Consensus 460 i~~v~Q~~~lf~~-ti~~ni~~~~~~~-------~~---~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqr 528 (1077)
++|++|++.++.+ |++||+.++.... .. +++.++++.. |++........+||||||||
T Consensus 87 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~~~LSgG~~qr 155 (265)
T PRK10575 87 VAYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLV-----------GLKPLAHRLVDSLSGGERQR 155 (265)
T ss_pred eEEeccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHc-----------CCHHHhcCCcccCCHHHHHH
Confidence 9999999877665 9999998763210 11 1122222221 22233445566899999999
Q ss_pred HHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh--CCCeEEEEccCchhHhh-cCEEEEEECCEEEEecChhHH
Q 001438 529 IAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVM--VGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEEL 605 (1077)
Q Consensus 529 i~lARal~~~p~illlDEpts~lD~~~~~~i~~~l~~~~--~~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l 605 (1077)
++||||++.+|++|||||||++||+.+.+.+.+.|+++. .++|+|++||+++.+.. ||+|++|++|++++.|+++++
T Consensus 156 v~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~~i~~~~d~i~~l~~G~i~~~~~~~~~ 235 (265)
T PRK10575 156 AWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGEMIAQGTPAEL 235 (265)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHHh
Confidence 999999999999999999999999999999999998874 37999999999999864 999999999999999999887
Q ss_pred hc
Q 001438 606 IS 607 (1077)
Q Consensus 606 ~~ 607 (1077)
..
T Consensus 236 ~~ 237 (265)
T PRK10575 236 MR 237 (265)
T ss_pred cC
Confidence 64
|
|
| >cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-41 Score=357.76 Aligned_cols=209 Identities=33% Similarity=0.509 Sum_probs=171.6
Q ss_pred EEEEeEEEEcCCCC-CcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHHHhhhe
Q 001438 382 IEFKDVSFCYPSRP-DVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQI 460 (1077)
Q Consensus 382 i~~~~v~~~y~~~~-~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i 460 (1077)
++++|++++|++.. ..++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++.. .++++
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~-----~~~~i 75 (220)
T cd03293 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTG-----PGPDR 75 (220)
T ss_pred CeEEEEEEEcCCCCcceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcc-----ccCcE
Confidence 47899999997421 1469999999999999999999999999999999999999999999999998863 35679
Q ss_pred eEEccCCCccc-ccHHHHHhcCCC--CCCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHHhcc
Q 001438 461 GLVNQEPALFA-TTIRENILYGKD--DATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVK 537 (1077)
Q Consensus 461 ~~v~Q~~~lf~-~ti~~ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~~ 537 (1077)
+|+||++.+|+ .|++||+.++.. ....++..+ + ..+.++.+ |++........+||||||||++||||++.
T Consensus 76 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~--~---~~~~l~~~--~l~~~~~~~~~~LSgG~~qrl~la~al~~ 148 (220)
T cd03293 76 GYVFQQDALLPWLTVLDNVALGLELQGVPKAEARE--R---AEELLELV--GLSGFENAYPHQLSGGMRQRVALARALAV 148 (220)
T ss_pred EEEecccccccCCCHHHHHHHHHHHcCCCHHHHHH--H---HHHHHHHc--CChhhhhCCcccCCHHHHHHHHHHHHHHc
Confidence 99999999987 599999987532 111111111 1 11222222 33444556667899999999999999999
Q ss_pred CCCEEEEeCcCCCCCHHHHHHHHHHHHHHh--CCCeEEEEccCchhHhh-cCEEEEEE--CCEEEEecCh
Q 001438 538 NPSILLLDEATSALDAESENSVQEALDRVM--VGRTTVVVAHRLSTIRN-ADVIAVVQ--GRKIVKTGSH 602 (1077)
Q Consensus 538 ~p~illlDEpts~lD~~~~~~i~~~l~~~~--~~~t~i~vtH~~~~~~~-~d~i~~l~--~G~i~~~g~~ 602 (1077)
+|+++||||||++||+.+++.+.+.|+++. .++|+|++||+++.+.. ||++++|+ +|++++.++.
T Consensus 149 ~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~G~i~~~~~~ 218 (220)
T cd03293 149 DPDVLLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHDIDEAVFLADRVVVLSARPGRIVAEVEV 218 (220)
T ss_pred CCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCCCEEEEEEEe
Confidence 999999999999999999999999998873 37999999999998754 99999999 7999998765
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14272 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-40 Score=362.26 Aligned_cols=227 Identities=30% Similarity=0.507 Sum_probs=183.5
Q ss_pred cEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCC-----ccEEEECCeeCCC--CCH
Q 001438 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPL-----SGEILLDGNNIKG--LDL 453 (1077)
Q Consensus 381 ~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~-----~G~i~~~g~~~~~--~~~ 453 (1077)
.++++|++++|++ .++++|+||+|++||+++|+||||||||||+++|+|+++|+ +|+|.++|+++.. .+.
T Consensus 4 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~ 80 (252)
T PRK14272 4 LLSAQDVNIYYGD---KQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDP 80 (252)
T ss_pred EEEEeeeEEEECC---EEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCccCH
Confidence 4789999999963 36899999999999999999999999999999999999874 8999999999864 334
Q ss_pred HHHhhheeEEccCCCcccc-cHHHHHhcCCC--CC-CHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHH
Q 001438 454 KWLRQQIGLVNQEPALFAT-TIRENILYGKD--DA-TMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRI 529 (1077)
Q Consensus 454 ~~~r~~i~~v~Q~~~lf~~-ti~~ni~~~~~--~~-~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri 529 (1077)
..+|+.++|++|++.+|+. |++||+.++.. .. ..++..+.+. .....+ .+.++..........+||||||||+
T Consensus 81 ~~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~--~~l~~~-~l~~~l~~~~~~~~~~LS~G~~qrv 157 (252)
T PRK14272 81 VAMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAE--RSLRGA-ALWDEVKDRLKTPATGLSGGQQQRL 157 (252)
T ss_pred HHhhceeEEEeccCccCcCCCHHHHHHHHHHhcCCCCHHHHHHHHH--HHHHHc-CcchhhhhhhcCCcccCCHHHHHHH
Confidence 5678889999999999985 99999986532 11 2222222111 111111 1111122233455678999999999
Q ss_pred HHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEccCchhHhh-cCEEEEEECCEEEEecChhHHhcC
Q 001438 530 AISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELISN 608 (1077)
Q Consensus 530 ~lARal~~~p~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 608 (1077)
+||||++++|++|||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+.. ||+|++|++|++++.|+++++..+
T Consensus 158 ~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 237 (252)
T PRK14272 158 CIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKKVTTIIIVTHNMHQAARVSDTTSFFLVGDLVEHGPTDQLFTN 237 (252)
T ss_pred HHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhC
Confidence 9999999999999999999999999999999999988778999999999999875 999999999999999999999876
Q ss_pred CCchH
Q 001438 609 PNSAY 613 (1077)
Q Consensus 609 ~~~~~ 613 (1077)
+...+
T Consensus 238 ~~~~~ 242 (252)
T PRK14272 238 PRDER 242 (252)
T ss_pred cCcHH
Confidence 44444
|
|
| >PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-40 Score=362.20 Aligned_cols=220 Identities=30% Similarity=0.528 Sum_probs=182.0
Q ss_pred ccEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCC--------
Q 001438 380 GHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGL-------- 451 (1077)
Q Consensus 380 ~~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~-------- 451 (1077)
+.++++|+++.|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...
T Consensus 4 ~~l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 80 (257)
T PRK10619 4 NKLNVIDLHKRYGE---HEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQLK 80 (257)
T ss_pred ccEEEeeeEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccccccccccc
Confidence 46999999999963 3589999999999999999999999999999999999999999999999988642
Q ss_pred -----CHHHHhhheeEEccCCCcccc-cHHHHHhcCC---CCCCHHHHHHHHHHHhHHHHHhcCccchhhhh-cCCCCCC
Q 001438 452 -----DLKWLRQQIGLVNQEPALFAT-TIRENILYGK---DDATMEEITRAAKLSEAMSFISNLPERFETQV-GERGIQL 521 (1077)
Q Consensus 452 -----~~~~~r~~i~~v~Q~~~lf~~-ti~~ni~~~~---~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~-~~~g~~L 521 (1077)
....+|++++|+||++.+|+. |++||+.++. .....++..+. . .+.++.+ |+.... .....+|
T Consensus 81 ~~~~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~~~~~~~~~~~--~---~~~l~~~--gl~~~~~~~~~~~L 153 (257)
T PRK10619 81 VADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARER--A---VKYLAKV--GIDERAQGKYPVHL 153 (257)
T ss_pred cccchHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhCCCCHHHHHHH--H---HHHHHHc--CCChhhhhCCcccC
Confidence 134567889999999999975 9999997642 11111111111 1 1222222 333332 4567899
Q ss_pred ChHHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCeEEEEccCchhHhh-cCEEEEEECCEEEEe
Q 001438 522 SGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKT 599 (1077)
Q Consensus 522 SgGqkqri~lARal~~~p~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~ 599 (1077)
|||||||++|||||+++|+++||||||++||+.+.+.+.+.|+++. +|+|+|+|||+++.+.. ||||++|++|++++.
T Consensus 154 S~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~ 233 (257)
T PRK10619 154 SGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEE 233 (257)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEe
Confidence 9999999999999999999999999999999999999999998875 48999999999999886 999999999999999
Q ss_pred cChhHHhcCC
Q 001438 600 GSHEELISNP 609 (1077)
Q Consensus 600 g~~~~l~~~~ 609 (1077)
|+++++...+
T Consensus 234 ~~~~~~~~~~ 243 (257)
T PRK10619 234 GAPEQLFGNP 243 (257)
T ss_pred CCHHHhhhCc
Confidence 9999987643
|
|
| >COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-40 Score=368.04 Aligned_cols=214 Identities=32% Similarity=0.533 Sum_probs=181.6
Q ss_pred cEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHHHhhhe
Q 001438 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQI 460 (1077)
Q Consensus 381 ~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i 460 (1077)
.++++|++++|+. +..+|+||||+|++||++|++||||||||||+++|+|++.|++|+|.++|.+...- ..+.|++|
T Consensus 4 ~i~~~~l~k~~~~--~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~-~~~~~~~i 80 (293)
T COG1131 4 VIEVRNLTKKYGG--DKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKE-PAKVRRRI 80 (293)
T ss_pred eeeecceEEEeCC--CCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccC-HHHHHhhe
Confidence 4788999999973 24699999999999999999999999999999999999999999999999988765 67788899
Q ss_pred eEEccCCCcccc-cHHHHHhcCCCCC--C----HHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHH
Q 001438 461 GLVNQEPALFAT-TIRENILYGKDDA--T----MEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISR 533 (1077)
Q Consensus 461 ~~v~Q~~~lf~~-ti~~ni~~~~~~~--~----~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lAR 533 (1077)
||+||+|.+++. |++||+.|..... . .+.+.+.++.. .|++ .-..+...||+|||||++||+
T Consensus 81 gy~~~~~~~~~~lT~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~-------~L~~----~~~~~~~~lS~G~kqrl~ia~ 149 (293)
T COG1131 81 GYVPQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELLELF-------GLED----KANKKVRTLSGGMKQRLSIAL 149 (293)
T ss_pred EEEccCCCCCccccHHHHHHHHHHHhCCChhHHHHHHHHHHHHc-------CCch----hhCcchhhcCHHHHHHHHHHH
Confidence 999999998877 9999998743111 1 12232333222 2333 114556789999999999999
Q ss_pred HhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC-C-CeEEEEccCchhHhh-cCEEEEEECCEEEEecChhHHhcC
Q 001438 534 AIVKNPSILLLDEATSALDAESENSVQEALDRVMV-G-RTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELISN 608 (1077)
Q Consensus 534 al~~~p~illlDEpts~lD~~~~~~i~~~l~~~~~-~-~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 608 (1077)
||+.+|++|||||||++||+.+...+.+.|+++.+ + +|++++||.++.+.. ||+|++|++|+++..|+.+++...
T Consensus 150 aL~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~e~~~~~d~v~il~~G~~~~~g~~~~l~~~ 227 (293)
T COG1131 150 ALLHDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILEEAEELCDRVIILNDGKIIAEGTPEELKEK 227 (293)
T ss_pred HHhcCCCEEEECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHHHHHHhCCEEEEEeCCEEEEeCCHHHHHHh
Confidence 99999999999999999999999999999999864 5 799999999999987 999999999999999999987643
|
|
| >PRK14275 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-40 Score=365.52 Aligned_cols=228 Identities=29% Similarity=0.495 Sum_probs=183.8
Q ss_pred ccEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccC-----CCccEEEECCeeCCCC--C
Q 001438 380 GHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYE-----PLSGEILLDGNNIKGL--D 452 (1077)
Q Consensus 380 ~~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~-----~~~G~i~~~g~~~~~~--~ 452 (1077)
..++++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+.+ |++|+|.++|+++... +
T Consensus 38 ~~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~~~ 114 (286)
T PRK14275 38 PHVVAKNFSIYYGE---FEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTD 114 (286)
T ss_pred eEEEEeeeEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhcccc
Confidence 46899999999964 358999999999999999999999999999999999864 4999999999998643 2
Q ss_pred HHHHhhheeEEccCCCcccccHHHHHhcCCC--CC-CHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHH
Q 001438 453 LKWLRQQIGLVNQEPALFATTIRENILYGKD--DA-TMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRI 529 (1077)
Q Consensus 453 ~~~~r~~i~~v~Q~~~lf~~ti~~ni~~~~~--~~-~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri 529 (1077)
...+|++++|++|++.+|+.|++||+.++.. .. ..+...+.+ ....+.+ .+.++........+..||||||||+
T Consensus 115 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~--~~~l~~~-~l~~~l~~~~~~~~~~LSgGq~qrv 191 (286)
T PRK14275 115 EVLLRKKIGMVFQKPNPFPKSIFDNIAYGPRLHGINDKKQLEEIV--EKSLRKA-ALWDEVSDRLDKNALGLSGGQQQRL 191 (286)
T ss_pred hHHhhhcEEEECCCCCCCccCHHHHHHhHHHhcCCCcHHHHHHHH--HHHHHHh-CCccchhhHhhCChhhCCHHHHHHH
Confidence 3457888999999999998899999987632 11 111111111 1111111 1111222334567789999999999
Q ss_pred HHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEccCchhHhh-cCEEEEEECCEEEEecChhHHhcC
Q 001438 530 AISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELISN 608 (1077)
Q Consensus 530 ~lARal~~~p~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 608 (1077)
+||||++.+|+++||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+.. ||++++|++|++++.|+++++.++
T Consensus 192 ~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tvIivsH~~~~~~~~~d~i~~L~~G~i~~~g~~~~~~~~ 271 (286)
T PRK14275 192 CVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRGSYTIMIVTHNMQQASRVSDYTMFFYEGVLVEHAPTAQLFTN 271 (286)
T ss_pred HHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhC
Confidence 9999999999999999999999999999999999988777899999999999865 999999999999999999999775
Q ss_pred CCchH
Q 001438 609 PNSAY 613 (1077)
Q Consensus 609 ~~~~~ 613 (1077)
+...+
T Consensus 272 ~~~~~ 276 (286)
T PRK14275 272 PKDRM 276 (286)
T ss_pred CCcHH
Confidence 44433
|
|
| >COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-41 Score=331.36 Aligned_cols=222 Identities=27% Similarity=0.488 Sum_probs=187.2
Q ss_pred ccEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHHH-hh
Q 001438 380 GHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWL-RQ 458 (1077)
Q Consensus 380 ~~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~-r~ 458 (1077)
+.+..+|+.++|.++ ++.+++||+|++||+|++.||||+||||.+.++.|+.+|++|+|.+||.|++.++.... |.
T Consensus 3 ~~L~a~~l~K~y~kr---~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d~G~i~ld~~diT~lPm~~RArl 79 (243)
T COG1137 3 STLVAENLAKSYKKR---KVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKRARL 79 (243)
T ss_pred cEEEehhhhHhhCCe---eeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecCCceEEECCcccccCChHHHhhc
Confidence 357889999999754 58999999999999999999999999999999999999999999999999999987654 55
Q ss_pred heeEEccCCCcccc-cHHHHHhcCCCCC--CHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHHh
Q 001438 459 QIGLVNQEPALFAT-TIRENILYGKDDA--TMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAI 535 (1077)
Q Consensus 459 ~i~~v~Q~~~lf~~-ti~~ni~~~~~~~--~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal 535 (1077)
.|||+||||.+|.+ ||+|||..-.+.. +.+..++..++..+ ++.+ .+...-...+.+||||||+|+.|||||
T Consensus 80 GigYLpQE~SIFr~LtV~dNi~~vlE~~~~d~~~~~~~~~l~~L---L~ef--~i~hlr~~~a~sLSGGERRR~EIARaL 154 (243)
T COG1137 80 GIGYLPQEASIFRKLTVEDNIMAVLEIREKDLKKAERKEELDAL---LEEF--HITHLRDSKAYSLSGGERRRVEIARAL 154 (243)
T ss_pred CcccccccchHhhcCcHHHHHHHHHhhhhcchhHHHHHHHHHHH---HHHh--chHHHhcCcccccccchHHHHHHHHHH
Confidence 69999999999988 9999997543211 11111222222223 2222 344555678899999999999999999
Q ss_pred ccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCeEEEEccCch-hHhhcCEEEEEECCEEEEecChhHHhcCC
Q 001438 536 VKNPSILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLS-TIRNADVIAVVQGRKIVKTGSHEELISNP 609 (1077)
Q Consensus 536 ~~~p~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~vtH~~~-~~~~~d~i~~l~~G~i~~~g~~~~l~~~~ 609 (1077)
..+|+.+|||||++++||.+-..|++.++.++ +|.-+++.-|+.. ++.-|||.+++.+|+|..+|+++|+.+++
T Consensus 155 a~~P~fiLLDEPFAGVDPiaV~dIq~iI~~L~~rgiGvLITDHNVREtL~i~dRaYIi~~G~vla~G~p~ei~~n~ 230 (243)
T COG1137 155 AANPKFILLDEPFAGVDPIAVIDIQRIIKHLKDRGIGVLITDHNVRETLDICDRAYIISDGKVLAEGSPEEIVNNE 230 (243)
T ss_pred hcCCCEEEecCCccCCCchhHHHHHHHHHHHHhCCceEEEccccHHHHHhhhheEEEEecCeEEecCCHHHHhcCh
Confidence 99999999999999999999999999998875 5888999999986 67789999999999999999999999763
|
|
| >PRK13548 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-40 Score=361.23 Aligned_cols=217 Identities=28% Similarity=0.449 Sum_probs=181.5
Q ss_pred cEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHHHhhhe
Q 001438 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQI 460 (1077)
Q Consensus 381 ~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i 460 (1077)
.|+++|++++|++ ..+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++++
T Consensus 2 ~l~~~~l~~~~~~---~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~~~~~~~~~~~~~~i 78 (258)
T PRK13548 2 MLEARNLSVRLGG---RTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELARRR 78 (258)
T ss_pred eEEEEeEEEEeCC---eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcccCCHHHhhhhe
Confidence 3789999999974 3589999999999999999999999999999999999999999999999999887777778889
Q ss_pred eEEccCCCc-ccccHHHHHhcCCCCC--CHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHHhc-
Q 001438 461 GLVNQEPAL-FATTIRENILYGKDDA--TMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIV- 536 (1077)
Q Consensus 461 ~~v~Q~~~l-f~~ti~~ni~~~~~~~--~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~- 536 (1077)
+|++|++.+ ++.|++||+.++.... ..++..+. ...+ ++.+ |++........+||||||||++||||++
T Consensus 79 ~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~--~~~~---l~~~--~l~~~~~~~~~~LSgGe~qrv~la~al~~ 151 (258)
T PRK13548 79 AVLPQHSSLSFPFTVEEVVAMGRAPHGLSRAEDDAL--VAAA---LAQV--DLAHLAGRDYPQLSGGEQQRVQLARVLAQ 151 (258)
T ss_pred EEEccCCcCCCCCCHHHHHHhhhcccCCCcHHHHHH--HHHH---HHHc--CCHhHhcCCcccCCHHHHHHHHHHHHHhc
Confidence 999999987 5669999998764211 11111111 1111 2111 3333445567799999999999999999
Q ss_pred -----cCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh--CCCeEEEEccCchhHh-hcCEEEEEECCEEEEecChhHHhc
Q 001438 537 -----KNPSILLLDEATSALDAESENSVQEALDRVM--VGRTTVVVAHRLSTIR-NADVIAVVQGRKIVKTGSHEELIS 607 (1077)
Q Consensus 537 -----~~p~illlDEpts~lD~~~~~~i~~~l~~~~--~~~t~i~vtH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~ 607 (1077)
.+|+++||||||++||+.+.+.+.+.|+++. +++|+|++||+++.+. .||+|++|++|++++.|+++++..
T Consensus 152 ~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 230 (258)
T PRK13548 152 LWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLNLAARYADRIVLLHQGRLVADGTPAEVLT 230 (258)
T ss_pred ccccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhcCEEEEEECCEEEeeCCHHHHhC
Confidence 5999999999999999999999999998875 4899999999999986 599999999999999999988864
|
|
| >PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-40 Score=362.61 Aligned_cols=215 Identities=28% Similarity=0.498 Sum_probs=181.8
Q ss_pred EEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHHHhhhee
Q 001438 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIG 461 (1077)
Q Consensus 382 i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 461 (1077)
++++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+..++++.++
T Consensus 3 l~~~~l~~~~~~---~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (255)
T PRK11231 3 LRTENLTVGYGT---KRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLARRLA 79 (255)
T ss_pred EEEEeEEEEECC---EEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCcEEEECCEEhHHCCHHHHhhheE
Confidence 789999999963 36999999999999999999999999999999999999999999999999998877778888899
Q ss_pred EEccCCCcccc-cHHHHHhcCCCC-------CCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHH
Q 001438 462 LVNQEPALFAT-TIRENILYGKDD-------ATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISR 533 (1077)
Q Consensus 462 ~v~Q~~~lf~~-ti~~ni~~~~~~-------~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lAR 533 (1077)
|+||++.++++ |++||+.++... ...+...+ ...+.+.+ |++......+..||||||||++|||
T Consensus 80 ~~~q~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~---~~~~l~~~-----~l~~~~~~~~~~LS~G~~qrv~lar 151 (255)
T PRK11231 80 LLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNAR---VNQAMEQT-----RINHLADRRLTDLSGGQRQRAFLAM 151 (255)
T ss_pred EecccCCCCCCccHHHHHHhccchhhhhccCCCHHHHHH---HHHHHHHc-----CCHHHHcCCcccCCHHHHHHHHHHH
Confidence 99999998876 999999886311 01111111 11111211 2333445667899999999999999
Q ss_pred HhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCeEEEEccCchhHhh-cCEEEEEECCEEEEecChhHHhc
Q 001438 534 AIVKNPSILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELIS 607 (1077)
Q Consensus 534 al~~~p~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~ 607 (1077)
|++.+|++|||||||++||+++.+.+.+.|+++. +++|+|++||+++.+.. ||++++|++|++++.|+++++..
T Consensus 152 al~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 227 (255)
T PRK11231 152 VLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDLNQASRYCDHLVVLANGHVMAQGTPEEVMT 227 (255)
T ss_pred HHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHhcCEEEEEECCeEEEEcCHHHhcC
Confidence 9999999999999999999999999999998874 48999999999999865 99999999999999999988864
|
|
| >cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-40 Score=358.56 Aligned_cols=213 Identities=35% Similarity=0.525 Sum_probs=173.2
Q ss_pred EEEEeEEEEcCCCC-CcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCH---HHHh
Q 001438 382 IEFKDVSFCYPSRP-DVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDL---KWLR 457 (1077)
Q Consensus 382 i~~~~v~~~y~~~~-~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~---~~~r 457 (1077)
|+++|++++|++.. +.++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+. ..+|
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (228)
T cd03257 2 LEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIRR 81 (228)
T ss_pred eEEEeeeEeccCCCcceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccchhhHHHhh
Confidence 68999999996431 1258999999999999999999999999999999999999999999999999987763 5678
Q ss_pred hheeEEccCCC--cc-cccHHHHHhcCCCC---CCHHHHHHHHHHHhHHHHHhcCccch-hhhhcCCCCCCChHHHHHHH
Q 001438 458 QQIGLVNQEPA--LF-ATTIRENILYGKDD---ATMEEITRAAKLSEAMSFISNLPERF-ETQVGERGIQLSGGQKQRIA 530 (1077)
Q Consensus 458 ~~i~~v~Q~~~--lf-~~ti~~ni~~~~~~---~~~~~~~~~~~~~~~~~~i~~l~~g~-~t~~~~~g~~LSgGqkqri~ 530 (1077)
++++|++|++. ++ ..|++||+.++... ...++..+.. . .+.++.+ |+ .........+||||||||++
T Consensus 82 ~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~--~--~~~l~~~--~l~~~~~~~~~~~LS~G~~qrv~ 155 (228)
T cd03257 82 KEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEA--V--LLLLVGV--GLPEEVLNRYPHELSGGQRQRVA 155 (228)
T ss_pred ccEEEEecCchhhcCCcCCHHHHHHHHHHhccCCcHHHHHHHH--H--HHHHHHC--CCChhHhhCCchhcCHHHHHHHH
Confidence 89999999993 44 46999999764211 1111111110 0 1122222 23 23456677899999999999
Q ss_pred HHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCeEEEEccCchhHh-hcCEEEEEECCEEEEec
Q 001438 531 ISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMV--GRTTVVVAHRLSTIR-NADVIAVVQGRKIVKTG 600 (1077)
Q Consensus 531 lARal~~~p~illlDEpts~lD~~~~~~i~~~l~~~~~--~~t~i~vtH~~~~~~-~~d~i~~l~~G~i~~~g 600 (1077)
||||++.+|+++||||||++||+.+++.+.+.|+++.+ ++|+|++||+++.+. .||+|++|++|++++.|
T Consensus 156 laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g 228 (228)
T cd03257 156 IARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLGVVAKIADRVAVMYAGKIVEEG 228 (228)
T ss_pred HHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEeCCEEEecC
Confidence 99999999999999999999999999999999998753 899999999999987 59999999999998764
|
The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. |
| >PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-40 Score=359.27 Aligned_cols=205 Identities=30% Similarity=0.450 Sum_probs=173.6
Q ss_pred ccEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHHHhhh
Q 001438 380 GHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQ 459 (1077)
Q Consensus 380 ~~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~ 459 (1077)
..|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++. .++++
T Consensus 11 ~~l~i~~l~~~~~~---~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~-----~~~~~ 82 (257)
T PRK11247 11 TPLLLNAVSKRYGE---RTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLA-----EARED 82 (257)
T ss_pred CcEEEEEEEEEECC---cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEHH-----HhhCc
Confidence 35999999999964 35899999999999999999999999999999999999999999999998753 45678
Q ss_pred eeEEccCCCccc-ccHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHHhccC
Q 001438 460 IGLVNQEPALFA-TTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKN 538 (1077)
Q Consensus 460 i~~v~Q~~~lf~-~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~~~ 538 (1077)
++|++|++.+|+ .|++||+.++......+++.++++. + |+.......+.+||||||||++||||++.+
T Consensus 83 i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~l~~---------~--gl~~~~~~~~~~LSgGqkqrl~laraL~~~ 151 (257)
T PRK11247 83 TRLMFQDARLLPWKKVIDNVGLGLKGQWRDAALQALAA---------V--GLADRANEWPAALSGGQKQRVALARALIHR 151 (257)
T ss_pred eEEEecCccCCCCCcHHHHHHhcccchHHHHHHHHHHH---------c--CChhHhcCChhhCCHHHHHHHHHHHHHhcC
Confidence 999999999987 5999999886422112222222222 2 333445667789999999999999999999
Q ss_pred CCEEEEeCcCCCCCHHHHHHHHHHHHHHh--CCCeEEEEccCchhHhh-cCEEEEEECCEEEEecChh
Q 001438 539 PSILLLDEATSALDAESENSVQEALDRVM--VGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHE 603 (1077)
Q Consensus 539 p~illlDEpts~lD~~~~~~i~~~l~~~~--~~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~ 603 (1077)
|+++||||||++||+.+.+.+.+.|+++. .++|+|+|||+++.+.. ||+|++|++|++++.|+.+
T Consensus 152 p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~~~~ 219 (257)
T PRK11247 152 PGLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDVSEAVAMADRVLLIEEGKIGLDLTVD 219 (257)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecccc
Confidence 99999999999999999999999998863 37999999999998764 9999999999999988764
|
|
| >cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-40 Score=354.46 Aligned_cols=205 Identities=37% Similarity=0.633 Sum_probs=170.1
Q ss_pred EEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHHHhhheeE
Q 001438 383 EFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIGL 462 (1077)
Q Consensus 383 ~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~ 462 (1077)
+++|++++|++. +.++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+...++++++|
T Consensus 1 ~~~~l~~~~~~~-~~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 79 (211)
T cd03225 1 ELKNLSFSYPDG-ARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRKVGL 79 (211)
T ss_pred CceeEEEecCCC-CeeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccCCHHHHHhhceE
Confidence 368999999742 1458999999999999999999999999999999999999999999999999987777778889999
Q ss_pred EccCCC--cccccHHHHHhcCCCC--CCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHHhccC
Q 001438 463 VNQEPA--LFATTIRENILYGKDD--ATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKN 538 (1077)
Q Consensus 463 v~Q~~~--lf~~ti~~ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~~~ 538 (1077)
+||++. +++.|++||+.++... ...++..+. . .+.++.+ |++........+||||||||++||||++.+
T Consensus 80 ~~q~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~--~---~~~l~~~--~l~~~~~~~~~~LSgG~~qrv~laral~~~ 152 (211)
T cd03225 80 VFQNPDDQFFGPTVEEEVAFGLENLGLPEEEIEER--V---EEALELV--GLEGLRDRSPFTLSGGQKQRVAIAGVLAMD 152 (211)
T ss_pred EecChhhhcCCCcHHHHHHHHHHHcCCCHHHHHHH--H---HHHHHHc--CcHhhhcCCcccCCHHHHHHHHHHHHHhcC
Confidence 999984 5677999999875321 122221111 1 1112222 334445667789999999999999999999
Q ss_pred CCEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCeEEEEccCchhHhh-cCEEEEEECCE
Q 001438 539 PSILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLSTIRN-ADVIAVVQGRK 595 (1077)
Q Consensus 539 p~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~vtH~~~~~~~-~d~i~~l~~G~ 595 (1077)
|+++||||||++||+.+++.+.+.|+++. +++|+|++||+++.+.. ||+|++|++|+
T Consensus 153 p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~G~ 211 (211)
T cd03225 153 PDILLLDEPTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDLDLLLELADRVIVLEDGK 211 (211)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCC
Confidence 99999999999999999999999998875 48999999999999877 99999999985
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-41 Score=340.38 Aligned_cols=220 Identities=30% Similarity=0.521 Sum_probs=188.1
Q ss_pred EEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHHH-hhhe
Q 001438 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWL-RQQI 460 (1077)
Q Consensus 382 i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~-r~~i 460 (1077)
++.++++++|++ ..+++|+||++++||+++|+|||||||||++|+|.|+|+|++|+|.++|+||..+++... |..|
T Consensus 5 L~v~~l~k~FGG---l~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~~G~v~~~G~~it~l~p~~iar~Gi 81 (250)
T COG0411 5 LEVRGLSKRFGG---LTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRIARLGI 81 (250)
T ss_pred eeeccceeecCC---EEEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccCCCceEEECCcccCCCCHHHHHhccc
Confidence 678999999973 468999999999999999999999999999999999999999999999999999998775 4569
Q ss_pred eEEccCCCcccc-cHHHHHhcCCCC------------CCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHH
Q 001438 461 GLVNQEPALFAT-TIRENILYGKDD------------ATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQ 527 (1077)
Q Consensus 461 ~~v~Q~~~lf~~-ti~~ni~~~~~~------------~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkq 527 (1077)
+--+|.+.+|++ ||.||+..+... ...++-....+...+++++ |++...++...+||+|||+
T Consensus 82 ~RTFQ~~rlF~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~v-----gL~~~a~~~A~~LsyG~qR 156 (250)
T COG0411 82 ARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFV-----GLGELADRPAGNLSYGQQR 156 (250)
T ss_pred eeecccccccCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHc-----CCchhhcchhhcCChhHhH
Confidence 999999999987 999999887321 1112222222233344443 4555556667789999999
Q ss_pred HHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCeEEEEccCchhHhh-cCEEEEEECCEEEEecChhH
Q 001438 528 RIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMV--GRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEE 604 (1077)
Q Consensus 528 ri~lARal~~~p~illlDEpts~lD~~~~~~i~~~l~~~~~--~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~ 604 (1077)
|+.|||||+.+|++|+||||.++|.+.....+.+.|+++.+ |.|+++|.||++.+.. ||||+||+.|+++.+|+|+|
T Consensus 157 ~LEIArALa~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g~tillIEHdM~~Vm~l~dri~Vl~~G~~IAeG~P~e 236 (250)
T COG0411 157 RLEIARALATQPKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEHDMKLVMGLADRIVVLNYGEVIAEGTPEE 236 (250)
T ss_pred HHHHHHHHhcCCCEEEecCccCCCCHHHHHHHHHHHHHHHhcCCcEEEEEEeccHHHhhhccEEEeccCCcCcccCCHHH
Confidence 99999999999999999999999999999999999999874 5999999999999865 99999999999999999999
Q ss_pred HhcCC
Q 001438 605 LISNP 609 (1077)
Q Consensus 605 l~~~~ 609 (1077)
+.+++
T Consensus 237 V~~dp 241 (250)
T COG0411 237 VRNNP 241 (250)
T ss_pred HhcCH
Confidence 98764
|
|
| >PRK14254 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-40 Score=363.36 Aligned_cols=221 Identities=31% Similarity=0.562 Sum_probs=182.4
Q ss_pred cccEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccC-----CCccEEEECCeeCCC--C
Q 001438 379 SGHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYE-----PLSGEILLDGNNIKG--L 451 (1077)
Q Consensus 379 ~~~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~-----~~~G~i~~~g~~~~~--~ 451 (1077)
+..|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|+++.. .
T Consensus 37 ~~~l~i~~l~~~~~~---~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~~ 113 (285)
T PRK14254 37 ETVIEARDLNVFYGD---EQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADV 113 (285)
T ss_pred CceEEEEEEEEEECC---EeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEcccccc
Confidence 345999999999964 358999999999999999999999999999999999997 689999999999864 3
Q ss_pred CHHHHhhheeEEccCCCcccccHHHHHhcCCCC--CCH---HHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHH
Q 001438 452 DLKWLRQQIGLVNQEPALFATTIRENILYGKDD--ATM---EEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQK 526 (1077)
Q Consensus 452 ~~~~~r~~i~~v~Q~~~lf~~ti~~ni~~~~~~--~~~---~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqk 526 (1077)
+...+|++++|++|++.+|+.|++||+.++... ... +++.++++.. .+........+.++.+||||||
T Consensus 114 ~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~-------~l~~~i~~~~~~~~~~LSgGe~ 186 (285)
T PRK14254 114 DPVALRRRIGMVFQKPNPFPKSIYDNVAYGLKIQGYDGDIDERVEESLRRA-------ALWDEVKDQLDSSGLDLSGGQQ 186 (285)
T ss_pred chHhhhccEEEEecCCccCcCCHHHHHHHHHHHcCCcHHHHHHHHHHHHHc-------CCCchhHHHHhCCcccCCHHHH
Confidence 455678899999999999988999999875311 111 1122222211 1222222345667889999999
Q ss_pred HHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEccCchhHhh-cCEEE-EEECCEEEEecChhH
Q 001438 527 QRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRN-ADVIA-VVQGRKIVKTGSHEE 604 (1077)
Q Consensus 527 qri~lARal~~~p~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~vtH~~~~~~~-~d~i~-~l~~G~i~~~g~~~~ 604 (1077)
||++||||++.+|+||||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+.. |||++ +|++|+|++.|++++
T Consensus 187 qrv~LAraL~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~~~~tiii~tH~~~~i~~~~dri~v~l~~G~i~~~g~~~~ 266 (285)
T PRK14254 187 QRLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAEEYTVVIVTHNMQQAARISDKTAVFLTGGELVEFDDTDK 266 (285)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEeeCCEEEEeCCHHH
Confidence 9999999999999999999999999999999999999998767899999999999875 99975 579999999999999
Q ss_pred HhcCC
Q 001438 605 LISNP 609 (1077)
Q Consensus 605 l~~~~ 609 (1077)
+..++
T Consensus 267 ~~~~~ 271 (285)
T PRK14254 267 IFENP 271 (285)
T ss_pred HHhCc
Confidence 87643
|
|
| >PRK11124 artP arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-40 Score=358.63 Aligned_cols=217 Identities=28% Similarity=0.492 Sum_probs=180.5
Q ss_pred cEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCC------CCCHH
Q 001438 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIK------GLDLK 454 (1077)
Q Consensus 381 ~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~------~~~~~ 454 (1077)
.++++|+++.|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++. .....
T Consensus 2 ~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 78 (242)
T PRK11124 2 SIQLNGINCFYGA---HQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIR 78 (242)
T ss_pred EEEEEeeEEEECC---eeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccccccchhhHH
Confidence 3789999999964 35899999999999999999999999999999999999999999999999873 12345
Q ss_pred HHhhheeEEccCCCcccc-cHHHHHhcCC---CCCCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHH
Q 001438 455 WLRQQIGLVNQEPALFAT-TIRENILYGK---DDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIA 530 (1077)
Q Consensus 455 ~~r~~i~~v~Q~~~lf~~-ti~~ni~~~~---~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~ 530 (1077)
.+|++++|+||++.+|++ |++||+.++. .....++..+ .+.+.++.+ |++........+||||||||++
T Consensus 79 ~~~~~i~~~~q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~-----~~~~~l~~~--gl~~~~~~~~~~LS~G~~qrv~ 151 (242)
T PRK11124 79 ELRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQALA-----RAEKLLERL--RLKPYADRFPLHLSGGQQQRVA 151 (242)
T ss_pred HHHhheEEEecCccccCCCcHHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHHc--CChhhhhCChhhCCHHHHHHHH
Confidence 678899999999999976 9999997531 1111222111 112223333 4455566677899999999999
Q ss_pred HHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCeEEEEccCchhHhh-cCEEEEEECCEEEEecChhHHhc
Q 001438 531 ISRAIVKNPSILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELIS 607 (1077)
Q Consensus 531 lARal~~~p~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~ 607 (1077)
||||++.+|+++||||||++||+.+...+.+.|+++. +++|+|++||+++.+.. ||++++|++|++++.|+++++..
T Consensus 152 laral~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~g~i~~~~~~~~~~~ 230 (242)
T PRK11124 152 IARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDASCFTQ 230 (242)
T ss_pred HHHHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHhcC
Confidence 9999999999999999999999999999999998875 48999999999999865 99999999999999999988754
|
|
| >cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-40 Score=340.44 Aligned_cols=172 Identities=40% Similarity=0.677 Sum_probs=161.3
Q ss_pred EEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHHHhhhee
Q 001438 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIG 461 (1077)
Q Consensus 382 i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 461 (1077)
++++|++++|++. +.++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++.+.+...+|++++
T Consensus 1 i~~~~l~~~~~~~-~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (173)
T cd03246 1 LEVENVSFRYPGA-EPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGDHVG 79 (173)
T ss_pred CEEEEEEEEcCCC-CCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcccCCHHHHHhheE
Confidence 4789999999743 245899999999999999999999999999999999999999999999999999888888889999
Q ss_pred EEccCCCcccccHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHHhccCCCE
Q 001438 462 LVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSI 541 (1077)
Q Consensus 462 ~v~Q~~~lf~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~~~p~i 541 (1077)
|++|++.+|+.|++||+ ||||||||++||||++.+|++
T Consensus 80 ~~~q~~~~~~~tv~~~l------------------------------------------LS~G~~qrv~la~al~~~p~~ 117 (173)
T cd03246 80 YLPQDDELFSGSIAENI------------------------------------------LSGGQRQRLGLARALYGNPRI 117 (173)
T ss_pred EECCCCccccCcHHHHC------------------------------------------cCHHHHHHHHHHHHHhcCCCE
Confidence 99999999999999997 999999999999999999999
Q ss_pred EEEeCcCCCCCHHHHHHHHHHHHHHh-CCCeEEEEccCchhHhhcCEEEEEECCEE
Q 001438 542 LLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLSTIRNADVIAVVQGRKI 596 (1077)
Q Consensus 542 lllDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~vtH~~~~~~~~d~i~~l~~G~i 596 (1077)
+||||||++||+.+.+.+.+.|+++. +++|+|++||+++.+..||++++|++|++
T Consensus 118 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~d~v~~l~~G~i 173 (173)
T cd03246 118 LVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPETLASADRILVLEDGRV 173 (173)
T ss_pred EEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhCCEEEEEECCCC
Confidence 99999999999999999999998875 48999999999999888999999999974
|
They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra |
| >cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-40 Score=354.25 Aligned_cols=206 Identities=33% Similarity=0.534 Sum_probs=170.1
Q ss_pred EEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCH---HHHhh
Q 001438 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDL---KWLRQ 458 (1077)
Q Consensus 382 i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~---~~~r~ 458 (1077)
++++|++++|++. +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+. ..+|+
T Consensus 1 l~~~~l~~~~~~~--~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~ 78 (214)
T cd03292 1 IEFINVTKTYPNG--TAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLRR 78 (214)
T ss_pred CEEEEEEEEeCCC--ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHHH
Confidence 4789999999643 358999999999999999999999999999999999999999999999999987654 34678
Q ss_pred heeEEccCCCcccc-cHHHHHhcCCC--CCCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHHh
Q 001438 459 QIGLVNQEPALFAT-TIRENILYGKD--DATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAI 535 (1077)
Q Consensus 459 ~i~~v~Q~~~lf~~-ti~~ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal 535 (1077)
.++|++|++.+|+. |++||+.++.. ....++..+. .... ++.+ |++........+||||||||++||||+
T Consensus 79 ~i~~v~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~--~~~~---l~~~--~l~~~~~~~~~~LS~G~~qrv~laral 151 (214)
T cd03292 79 KIGVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKR--VPAA---LELV--GLSHKHRALPAELSGGEQQRVAIARAI 151 (214)
T ss_pred heEEEecCchhccCCcHHHHHHHHHHHcCCCHHHHHHH--HHHH---HHHc--CCHHHhhCChhhcCHHHHHHHHHHHHH
Confidence 89999999999985 99999987531 1122221111 1112 2222 233334556678999999999999999
Q ss_pred ccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCeEEEEccCchhHhh-cCEEEEEECCEE
Q 001438 536 VKNPSILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLSTIRN-ADVIAVVQGRKI 596 (1077)
Q Consensus 536 ~~~p~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~vtH~~~~~~~-~d~i~~l~~G~i 596 (1077)
+.+|+++||||||++||+++.+.+.+.|+++. +++|+|++||+++.+.. ||++++|++|++
T Consensus 152 ~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~~ 214 (214)
T cd03292 152 VNSPTILIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHAKELVDTTRHRVIALERGKL 214 (214)
T ss_pred HcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 99999999999999999999999999998874 58999999999999875 999999999974
|
The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. |
| >PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-40 Score=361.57 Aligned_cols=221 Identities=25% Similarity=0.444 Sum_probs=183.9
Q ss_pred cEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHHH-hhh
Q 001438 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWL-RQQ 459 (1077)
Q Consensus 381 ~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~-r~~ 459 (1077)
.++++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+.... |..
T Consensus 5 ~l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (255)
T PRK11300 5 LLSVSGLMMRFGG---LLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIARMG 81 (255)
T ss_pred eEEEeeEEEEECC---EEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCcceEEECCEECCCCCHHHHHhcC
Confidence 5899999999963 369999999999999999999999999999999999999999999999999988776554 456
Q ss_pred eeEEccCCCcccc-cHHHHHhcCCCCCC--------------HHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChH
Q 001438 460 IGLVNQEPALFAT-TIRENILYGKDDAT--------------MEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGG 524 (1077)
Q Consensus 460 i~~v~Q~~~lf~~-ti~~ni~~~~~~~~--------------~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgG 524 (1077)
++|++|++.+|+. |++||+.++..... .+...+.. ....+.++.+ |++.....+..+||||
T Consensus 82 i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~--gl~~~~~~~~~~LS~G 157 (255)
T PRK11300 82 VVRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEAL--DRAATWLERV--GLLEHANRQAGNLAYG 157 (255)
T ss_pred eEEeccCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHH--HHHHHHHHhC--ChhhhhhCChhhCCHH
Confidence 9999999999986 99999997631100 00000000 1112223333 4555667788899999
Q ss_pred HHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCeEEEEccCchhHhh-cCEEEEEECCEEEEecC
Q 001438 525 QKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMV--GRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGS 601 (1077)
Q Consensus 525 qkqri~lARal~~~p~illlDEpts~lD~~~~~~i~~~l~~~~~--~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~g~ 601 (1077)
||||++||||++.+|++|||||||++||+.+.+.+.+.|.++.+ ++|+|++||+++.+.. ||++++|++|++++.|+
T Consensus 158 ~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~~ 237 (255)
T PRK11300 158 QQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMKLVMGISDRIYVVNQGTPLANGT 237 (255)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEecCC
Confidence 99999999999999999999999999999999999999988743 7899999999999865 99999999999999999
Q ss_pred hhHHhcC
Q 001438 602 HEELISN 608 (1077)
Q Consensus 602 ~~~l~~~ 608 (1077)
++++..+
T Consensus 238 ~~~~~~~ 244 (255)
T PRK11300 238 PEEIRNN 244 (255)
T ss_pred HHHHhhC
Confidence 9988643
|
|
| >PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-40 Score=364.49 Aligned_cols=218 Identities=32% Similarity=0.549 Sum_probs=179.5
Q ss_pred EEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCC--CCHHHHhhh
Q 001438 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKG--LDLKWLRQQ 459 (1077)
Q Consensus 382 i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~--~~~~~~r~~ 459 (1077)
++++|++++|++. .++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++.. .+...++++
T Consensus 2 l~~~~l~~~~~~~--~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (275)
T PRK13639 2 LETRDLKYSYPDG--TEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLEVRKT 79 (275)
T ss_pred EEEEEEEEEeCCC--CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEECccccchHHHHHhh
Confidence 6899999999632 358999999999999999999999999999999999999999999999999852 234567889
Q ss_pred eeEEccCC--CcccccHHHHHhcCCC--CCCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHHh
Q 001438 460 IGLVNQEP--ALFATTIRENILYGKD--DATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAI 535 (1077)
Q Consensus 460 i~~v~Q~~--~lf~~ti~~ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal 535 (1077)
|+|++|+| .+|+.|++||+.++.. ..+.++..+ +...+.+.+ |+.......+.+||||||||++||||+
T Consensus 80 i~~v~q~~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~--~~~~~l~~~-----~L~~~~~~~~~~LS~Gq~qrv~laral 152 (275)
T PRK13639 80 VGIVFQNPDDQLFAPTVEEDVAFGPLNLGLSKEEVEK--RVKEALKAV-----GMEGFENKPPHHLSGGQKKRVAIAGIL 152 (275)
T ss_pred eEEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHH--HHHHHHHHC-----CCchhhcCChhhCCHHHHHHHHHHHHH
Confidence 99999998 4778899999987532 112222111 111222221 222233445678999999999999999
Q ss_pred ccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCeEEEEccCchhHh-hcCEEEEEECCEEEEecChhHHhcC
Q 001438 536 VKNPSILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLSTIR-NADVIAVVQGRKIVKTGSHEELISN 608 (1077)
Q Consensus 536 ~~~p~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~vtH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~~ 608 (1077)
+.+|+++||||||++||+.+.+.+.+.|.++. +++|+|++||+++.+. .||++++|++|++++.|+++++...
T Consensus 153 ~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~~til~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 227 (275)
T PRK13639 153 AMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDVDLVPVYADKVYVMSDGKIIKEGTPKEVFSD 227 (275)
T ss_pred hcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 99999999999999999999999999999875 4899999999999986 5999999999999999999998754
|
|
| >PRK10636 putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-39 Score=394.89 Aligned_cols=206 Identities=25% Similarity=0.373 Sum_probs=156.3
Q ss_pred EEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHHHhhhee
Q 001438 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIG 461 (1077)
Q Consensus 382 i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 461 (1077)
|+++|++++|++ ..+|+|+||+|++|+++||+||||||||||+++|+|+++|++|+|.++|.. .++
T Consensus 2 i~i~nls~~~g~---~~~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~pd~G~I~~~~~~-----------~i~ 67 (638)
T PRK10636 2 IVFSSLQIRRGV---RVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISADGGSYTFPGNW-----------QLA 67 (638)
T ss_pred EEEEEEEEEeCC---ceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCC-----------EEE
Confidence 789999999964 358999999999999999999999999999999999999999999998842 488
Q ss_pred EEccCCCcccccHHHHHhcCCCCC--------------CHHHHHHHHH----------HHhHHHHHhcCccchh-hhhcC
Q 001438 462 LVNQEPALFATTIRENILYGKDDA--------------TMEEITRAAK----------LSEAMSFISNLPERFE-TQVGE 516 (1077)
Q Consensus 462 ~v~Q~~~lf~~ti~~ni~~~~~~~--------------~~~~~~~~~~----------~~~~~~~i~~l~~g~~-t~~~~ 516 (1077)
|++|++..+..|+.+++.-+.... .......... .....+.+..+ |+. .....
T Consensus 68 ~~~q~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l--gl~~~~~~~ 145 (638)
T PRK10636 68 WVNQETPALPQPALEYVIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGL--GFSNEQLER 145 (638)
T ss_pred EEecCCCCCCCCHHHHHHHhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhC--CCCchhhcC
Confidence 999876544456666553211000 0000000000 00111222222 232 22345
Q ss_pred CCCCCChHHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEccCchhHhh-cCEEEEEECCE
Q 001438 517 RGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRN-ADVIAVVQGRK 595 (1077)
Q Consensus 517 ~g~~LSgGqkqri~lARal~~~p~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~vtH~~~~~~~-~d~i~~l~~G~ 595 (1077)
...+||||||||++|||||+.+|++|||||||++||+.+...+.+.|++. +.|+|+|||+...+.. ||+|++|++|+
T Consensus 146 ~~~~LSgGerqRv~LA~aL~~~P~lLLLDEPtn~LD~~~~~~L~~~L~~~--~~tviivsHd~~~l~~~~d~i~~L~~G~ 223 (638)
T PRK10636 146 PVSDFSGGWRMRLNLAQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKSY--QGTLILISHDRDFLDPIVDKIIHIEQQS 223 (638)
T ss_pred chhhcCHHHHHHHHHHHHHccCCCEEEEcCCCCcCCHHHHHHHHHHHHhC--CCeEEEEeCCHHHHHHhcCEEEEEeCCE
Confidence 56789999999999999999999999999999999999999999998875 5699999999999876 99999999999
Q ss_pred EEE-ecChhHH
Q 001438 596 IVK-TGSHEEL 605 (1077)
Q Consensus 596 i~~-~g~~~~l 605 (1077)
+.. .|++++.
T Consensus 224 i~~~~g~~~~~ 234 (638)
T PRK10636 224 LFEYTGNYSSF 234 (638)
T ss_pred EEEecCCHHHH
Confidence 964 5655544
|
|
| >PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-40 Score=372.45 Aligned_cols=233 Identities=21% Similarity=0.357 Sum_probs=185.2
Q ss_pred cEEEEeEEEEcCCC-CCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccC----CCccEEEECCeeCCCCCHHH
Q 001438 381 HIEFKDVSFCYPSR-PDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYE----PLSGEILLDGNNIKGLDLKW 455 (1077)
Q Consensus 381 ~i~~~~v~~~y~~~-~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~----~~~G~i~~~g~~~~~~~~~~ 455 (1077)
-++++|++++|+.. ....+++|+||+|++||+++|+|+||||||||+++|+|+.+ |++|+|.++|+++.+++.+.
T Consensus 3 ~L~v~~l~~~y~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~ 82 (330)
T PRK15093 3 LLDIRNLTIEFKTSDGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPRE 82 (330)
T ss_pred eEEEeeeEEEEeCCCCCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHHH
Confidence 37899999999642 12468999999999999999999999999999999999986 58999999999998887665
Q ss_pred Hh----hheeEEccCCC--ccc-ccHHHHHhcCCC---C-----CCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCC
Q 001438 456 LR----QQIGLVNQEPA--LFA-TTIRENILYGKD---D-----ATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQ 520 (1077)
Q Consensus 456 ~r----~~i~~v~Q~~~--lf~-~ti~~ni~~~~~---~-----~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~ 520 (1077)
++ +.|+||+|+|. +.+ .|+.+|+..... . ...++.. .+..+..+.+ .+++ ........+.+
T Consensus 83 ~~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~~L~~~-gL~~-~~~~~~~~p~~ 158 (330)
T PRK15093 83 RRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRK--RRAIELLHRV-GIKD-HKDAMRSFPYE 158 (330)
T ss_pred HHHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHH--HHHHHHHHHC-CCCC-hHHHHhCCchh
Confidence 43 47999999996 333 489999864211 0 0111111 1111222221 2221 11234566789
Q ss_pred CChHHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCeEEEEccCchhHhh-cCEEEEEECCEEE
Q 001438 521 LSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMV--GRTTVVVAHRLSTIRN-ADVIAVVQGRKIV 597 (1077)
Q Consensus 521 LSgGqkqri~lARal~~~p~illlDEpts~lD~~~~~~i~~~l~~~~~--~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~ 597 (1077)
||||||||++|||||+.+|++|||||||++||+.+.+.+.+.|+++.+ |.|+|+|||+++.+.. ||+|++|++|+|+
T Consensus 159 LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl~~v~~~~dri~vm~~G~iv 238 (330)
T PRK15093 159 LTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQMLSQWADKINVLYCGQTV 238 (330)
T ss_pred CCHHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEE
Confidence 999999999999999999999999999999999999999999998753 8999999999999965 9999999999999
Q ss_pred EecChhHHhcCCCchHHHHH
Q 001438 598 KTGSHEELISNPNSAYAALV 617 (1077)
Q Consensus 598 ~~g~~~~l~~~~~~~~~~~~ 617 (1077)
+.|+.+++.+++...|.+.+
T Consensus 239 e~g~~~~i~~~p~~~y~~~l 258 (330)
T PRK15093 239 ETAPSKELVTTPHHPYTQAL 258 (330)
T ss_pred EECCHHHHHhCCCCHHHHHH
Confidence 99999999887777776543
|
|
| >COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-39 Score=346.92 Aligned_cols=232 Identities=31% Similarity=0.513 Sum_probs=186.2
Q ss_pred cEEEEeEEEEcCCC-CCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCC-----CccEEEECCeeCCCCCHH
Q 001438 381 HIEFKDVSFCYPSR-PDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEP-----LSGEILLDGNNIKGLDLK 454 (1077)
Q Consensus 381 ~i~~~~v~~~y~~~-~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~-----~~G~i~~~g~~~~~~~~~ 454 (1077)
-++++|++..|... ....++++|||+|++||++|+||+||||||-..+.++|+++- .+|+|.++|.|+-..+..
T Consensus 6 lL~v~nLsV~f~~~~~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~se~ 85 (534)
T COG4172 6 LLSIRNLSVAFHQEGGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAASER 85 (534)
T ss_pred ceeeeccEEEEecCCcceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcCCHH
Confidence 47889988888532 245689999999999999999999999999999999999864 479999999999988888
Q ss_pred HHhh----heeEEccCCCc-cc-c-cH----HHHHhcCCCCCCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCCh
Q 001438 455 WLRQ----QIGLVNQEPAL-FA-T-TI----RENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSG 523 (1077)
Q Consensus 455 ~~r~----~i~~v~Q~~~l-f~-~-ti----~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSg 523 (1077)
.+|+ +|+.++|||.- .| - || .|-|.+...-...+.-.++ .++++.+ .+|+- ...+...+.+|||
T Consensus 86 ~lr~iRG~~I~MIFQEPMtSLNPl~tIg~Qi~E~l~~Hrg~~~~~Ar~r~---lelL~~V-gI~~p-~~rl~~yPHeLSG 160 (534)
T COG4172 86 QLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLHRGLSRAAARARA---LELLELV-GIPEP-EKRLDAYPHELSG 160 (534)
T ss_pred HHhhhcccceEEEecccccccCcHhHHHHHHHHHHHHHhcccHHHHHHHH---HHHHHHc-CCCch-hhhhhhCCcccCc
Confidence 8774 79999999952 22 1 44 4444443321111111122 2222322 34432 3456678889999
Q ss_pred HHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh--CCCeEEEEccCchhHhh-cCEEEEEECCEEEEec
Q 001438 524 GQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVM--VGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTG 600 (1077)
Q Consensus 524 Gqkqri~lARal~~~p~illlDEpts~lD~~~~~~i~~~l~~~~--~~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~g 600 (1077)
|||||+.||.||+.+|++||-||||.|||...+.+|.+.|+++. .|..+++|||++..++. ||||+||.+|+++|.|
T Consensus 161 GqRQRVMIAMALan~P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~~~gMa~lfITHDL~iVr~~ADrV~VM~~G~ivE~~ 240 (534)
T COG4172 161 GQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAELGMAILFITHDLGIVRKFADRVYVMQHGEIVETG 240 (534)
T ss_pred chhhHHHHHHHHcCCCCeEeecCCcchhhhhhHHHHHHHHHHHHHHhCcEEEEEeccHHHHHHhhhhEEEEeccEEeecC
Confidence 99999999999999999999999999999999999999999874 48999999999999987 9999999999999999
Q ss_pred ChhHHhcCCCchHHHHH
Q 001438 601 SHEELISNPNSAYAALV 617 (1077)
Q Consensus 601 ~~~~l~~~~~~~~~~~~ 617 (1077)
+.+++..++...|.+..
T Consensus 241 ~t~~lF~~PqHpYTr~L 257 (534)
T COG4172 241 TTETLFAAPQHPYTRKL 257 (534)
T ss_pred cHHHHhhCCCChHHHHH
Confidence 99999998888877543
|
|
| >PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-40 Score=361.21 Aligned_cols=217 Identities=26% Similarity=0.429 Sum_probs=182.8
Q ss_pred ccEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHHHhhh
Q 001438 380 GHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQ 459 (1077)
Q Consensus 380 ~~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~ 459 (1077)
..|+++|++++|++ ..+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+...+++.
T Consensus 6 ~~l~i~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 82 (265)
T PRK10253 6 ARLRGEQLTLGYGK---YTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVARR 82 (265)
T ss_pred cEEEEEEEEEEECC---EEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEEhhhCCHHHHhhh
Confidence 46999999999974 358999999999999999999999999999999999999999999999999988887788889
Q ss_pred eeEEccCCCccc-ccHHHHHhcCC-CC------CCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHH
Q 001438 460 IGLVNQEPALFA-TTIRENILYGK-DD------ATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAI 531 (1077)
Q Consensus 460 i~~v~Q~~~lf~-~ti~~ni~~~~-~~------~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~l 531 (1077)
++|+||++.+|. .|++||+.++. +. .......++ ..+ ++.+ |++......+.+||||||||++|
T Consensus 83 i~~v~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~---l~~~--~l~~~~~~~~~~LS~Gq~qrv~l 154 (265)
T PRK10253 83 IGLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAV---TKA---MQAT--GITHLADQSVDTLSGGQRQRAWI 154 (265)
T ss_pred eEEeeccCcCCCCCcHHHHHHhCcccccccccCCCHHHHHHH---HHH---HHHc--CCHHHhcCCcccCChHHHHHHHH
Confidence 999999998875 59999998753 11 011111111 111 2111 33334556778999999999999
Q ss_pred HHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh--CCCeEEEEccCchhHhh-cCEEEEEECCEEEEecChhHHhc
Q 001438 532 SRAIVKNPSILLLDEATSALDAESENSVQEALDRVM--VGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELIS 607 (1077)
Q Consensus 532 ARal~~~p~illlDEpts~lD~~~~~~i~~~l~~~~--~~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~ 607 (1077)
|||++.+|+++||||||++||+.+.+.+.+.|+++. .++|+|++||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 155 aral~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 233 (265)
T PRK10253 155 AMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLNQACRYASHLIALREGKIVAQGAPKEIVT 233 (265)
T ss_pred HHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhh
Confidence 999999999999999999999999999999998874 37899999999998755 99999999999999999998764
|
|
| >PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-40 Score=354.26 Aligned_cols=211 Identities=28% Similarity=0.479 Sum_probs=178.6
Q ss_pred cEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHHHhhhe
Q 001438 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQI 460 (1077)
Q Consensus 381 ~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i 460 (1077)
.|+++|+++.|++ .++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.+
T Consensus 7 ~i~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 83 (225)
T PRK10247 7 LLQLQNVGYLAGD---AKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYRQQV 83 (225)
T ss_pred eEEEeccEEeeCC---ceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcCcCCHHHHHhcc
Confidence 5899999999963 3589999999999999999999999999999999999999999999999999888877788899
Q ss_pred eEEccCCCcccccHHHHHhcCCC--CCCHHHHHHHHHHHhHHHHHhcCccch-hhhhcCCCCCCChHHHHHHHHHHHhcc
Q 001438 461 GLVNQEPALFATTIRENILYGKD--DATMEEITRAAKLSEAMSFISNLPERF-ETQVGERGIQLSGGQKQRIAISRAIVK 537 (1077)
Q Consensus 461 ~~v~Q~~~lf~~ti~~ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~-~t~~~~~g~~LSgGqkqri~lARal~~ 537 (1077)
+|++|++.+|+.|++||+.++.. ....++ .+.. +.++.+ |+ ++.....+.+||||||||++||||++.
T Consensus 84 ~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~----~~~~---~~l~~~--~l~~~~~~~~~~~LS~G~~qrv~laral~~ 154 (225)
T PRK10247 84 SYCAQTPTLFGDTVYDNLIFPWQIRNQQPDP----AIFL---DDLERF--ALPDTILTKNIAELSGGEKQRISLIRNLQF 154 (225)
T ss_pred EEEecccccccccHHHHHHhHHhhcCCChHH----HHHH---HHHHHc--CCChHHhcCCcccCCHHHHHHHHHHHHHhc
Confidence 99999999998999999986421 111111 1111 222223 23 234567788999999999999999999
Q ss_pred CCCEEEEeCcCCCCCHHHHHHHHHHHHHHh--CCCeEEEEccCchhHhhcCEEEEEE-CCEEEEecChh
Q 001438 538 NPSILLLDEATSALDAESENSVQEALDRVM--VGRTTVVVAHRLSTIRNADVIAVVQ-GRKIVKTGSHE 603 (1077)
Q Consensus 538 ~p~illlDEpts~lD~~~~~~i~~~l~~~~--~~~t~i~vtH~~~~~~~~d~i~~l~-~G~i~~~g~~~ 603 (1077)
+|+++||||||++||+.+.+.+.+.|+++. .++|+|++||+++.++.||++++|+ ++..+++|+|+
T Consensus 155 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~~~~~~d~i~~l~~~~~~~~~~~~~ 223 (225)
T PRK10247 155 MPKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKDEINHADKVITLQPHAGEMQEARYE 223 (225)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChHHHHhCCEEEEEecccchHhhhhhc
Confidence 999999999999999999999999999874 3789999999999998899999994 67778888875
|
|
| >PRK14252 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-40 Score=360.16 Aligned_cols=225 Identities=28% Similarity=0.472 Sum_probs=186.7
Q ss_pred cccEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCC-----CccEEEECCeeCCC---
Q 001438 379 SGHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEP-----LSGEILLDGNNIKG--- 450 (1077)
Q Consensus 379 ~~~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~-----~~G~i~~~g~~~~~--- 450 (1077)
.+.|+++|++++|++ +++|+|+||+|++||+++|+|+||||||||+++|+|+.+| ++|+|.++|.++..
T Consensus 14 ~~~l~~~~l~~~~~~---~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~~~ 90 (265)
T PRK14252 14 QQKSEVNKLNFYYGG---YQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSP 90 (265)
T ss_pred CceEEEEEEEEEECC---eeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCcccccccc
Confidence 467999999999974 3599999999999999999999999999999999999875 79999999988742
Q ss_pred -CCHHHHhhheeEEccCCCcccccHHHHHhcCCC--CCCH-----HHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCC
Q 001438 451 -LDLKWLRQQIGLVNQEPALFATTIRENILYGKD--DATM-----EEITRAAKLSEAMSFISNLPERFETQVGERGIQLS 522 (1077)
Q Consensus 451 -~~~~~~r~~i~~v~Q~~~lf~~ti~~ni~~~~~--~~~~-----~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LS 522 (1077)
.....+++.++|++|++.+|++|++||+.++.. .... +++..+++.. .+.+++.+..+....+||
T Consensus 91 ~~~~~~~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~-------~l~~~l~~~~~~~~~~LS 163 (265)
T PRK14252 91 EVDPIEVRMRISMVFQKPNPFPKSIFENVAYGLRIRGVKRRSILEERVENALRNA-------ALWDEVKDRLGDLAFNLS 163 (265)
T ss_pred ccCHHHHhccEEEEccCCcCCcchHHHHHHhHHHHcCCChHHHHHHHHHHHHHHc-------CCchhhhHHHhCCcccCC
Confidence 334567888999999999999999999987531 1111 1222222221 222244455677788999
Q ss_pred hHHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEccCchhHh-hcCEEEEEECCEEEEecC
Q 001438 523 GGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIR-NADVIAVVQGRKIVKTGS 601 (1077)
Q Consensus 523 gGqkqri~lARal~~~p~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~vtH~~~~~~-~~d~i~~l~~G~i~~~g~ 601 (1077)
||||||++||||++.+|+++||||||++||+.+.+.+.+.|+++.+++|+|+|||+++.+. .||++++|++|++++.|+
T Consensus 164 ~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~tiiivth~~~~~~~~~d~i~~l~~G~i~~~g~ 243 (265)
T PRK14252 164 GGQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELISDLKNKVTILIVTHNMQQAARVSDYTAYMYMGELIEFGA 243 (265)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCC
Confidence 9999999999999999999999999999999999999999998877799999999999986 499999999999999999
Q ss_pred hhHHhcCCCchH
Q 001438 602 HEELISNPNSAY 613 (1077)
Q Consensus 602 ~~~l~~~~~~~~ 613 (1077)
++++..++...|
T Consensus 244 ~~~~~~~~~~~~ 255 (265)
T PRK14252 244 TDTIFIKPKNKQ 255 (265)
T ss_pred HHHHHhCCCCHH
Confidence 999876543333
|
|
| >PRK14241 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-40 Score=360.32 Aligned_cols=222 Identities=32% Similarity=0.535 Sum_probs=181.1
Q ss_pred cEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCC-----CccEEEECCeeCCC--CCH
Q 001438 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEP-----LSGEILLDGNNIKG--LDL 453 (1077)
Q Consensus 381 ~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~-----~~G~i~~~g~~~~~--~~~ 453 (1077)
.++++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|+++.. .+.
T Consensus 4 ~l~i~~v~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~ 80 (258)
T PRK14241 4 RIDVKDLNIYYGS---FHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDP 80 (258)
T ss_pred cEEEeeEEEEECC---EeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccccCh
Confidence 4899999999974 3589999999999999999999999999999999999974 69999999999853 345
Q ss_pred HHHhhheeEEccCCCcccc-cHHHHHhcCCCC---CCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHH
Q 001438 454 KWLRQQIGLVNQEPALFAT-TIRENILYGKDD---ATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRI 529 (1077)
Q Consensus 454 ~~~r~~i~~v~Q~~~lf~~-ti~~ni~~~~~~---~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri 529 (1077)
..+|+.++|++|++.+|+. |++||+.++... ...++..+. ...+.+.+ .+.++..........+||||||||+
T Consensus 81 ~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~--~~~~l~~~-~l~~~~~~~~~~~~~~LS~G~~qrv 157 (258)
T PRK14241 81 VAVRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDLDEL--VEKSLRGA-NLWNEVKDRLDKPGGGLSGGQQQRL 157 (258)
T ss_pred HHHhcceEEEccccccCCCCcHHHHHHHHHHhcCCCCHHHHHHH--HHHHHHHc-CCchhhhhHhhCCcccCCHHHHHHH
Confidence 5678889999999999875 999999865311 111111111 11111111 1221223345667789999999999
Q ss_pred HHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEccCchhHh-hcCEEEEEE------CCEEEEecCh
Q 001438 530 AISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIR-NADVIAVVQ------GRKIVKTGSH 602 (1077)
Q Consensus 530 ~lARal~~~p~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~vtH~~~~~~-~~d~i~~l~------~G~i~~~g~~ 602 (1077)
+||||++.+|+++||||||++||+.+...+.+.|+++.+++|+|++||+++.+. .||+|++|+ +|+|++.|++
T Consensus 158 ~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tviivsH~~~~~~~~~d~i~~l~~~~~~~~g~i~~~~~~ 237 (258)
T PRK14241 158 CIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELKQDYTIVIVTHNMQQAARVSDQTAFFNLEATGKPGRLVEIDDT 237 (258)
T ss_pred HHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEecccCCCCceEEecCCH
Confidence 999999999999999999999999999999999998877799999999999986 599999997 8999999999
Q ss_pred hHHhcC
Q 001438 603 EELISN 608 (1077)
Q Consensus 603 ~~l~~~ 608 (1077)
+++...
T Consensus 238 ~~~~~~ 243 (258)
T PRK14241 238 EKIFSN 243 (258)
T ss_pred HHHHhC
Confidence 998764
|
|
| >TIGR02673 FtsE cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-40 Score=352.86 Aligned_cols=205 Identities=34% Similarity=0.553 Sum_probs=167.9
Q ss_pred EEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHH---HHhh
Q 001438 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLK---WLRQ 458 (1077)
Q Consensus 382 i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~---~~r~ 458 (1077)
++++|++++|++ +.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++..++.. .+++
T Consensus 2 l~~~~l~~~~~~--~~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (214)
T TIGR02673 2 IEFHNVSKAYPG--GVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLLRR 79 (214)
T ss_pred EEEEeeeEEeCC--CceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHh
Confidence 689999999952 23689999999999999999999999999999999999999999999999999876543 4677
Q ss_pred heeEEccCCCccc-ccHHHHHhcCCCC--CCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHHh
Q 001438 459 QIGLVNQEPALFA-TTIRENILYGKDD--ATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAI 535 (1077)
Q Consensus 459 ~i~~v~Q~~~lf~-~ti~~ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal 535 (1077)
.++|++|+|.+|. .|++||+.++... ...++..+ +.... ++.+ |+.........+||||||||++||||+
T Consensus 80 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~--~~~~~---l~~~--~l~~~~~~~~~~LS~G~~qrl~la~al 152 (214)
T TIGR02673 80 RIGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQR--RVGAA---LRQV--GLEHKADAFPEQLSGGEQQRVAIARAI 152 (214)
T ss_pred heEEEecChhhccCCcHHHHHHHHHHHcCCCHHHHHH--HHHHH---HHHc--CChhhhhCChhhCCHHHHHHHHHHHHH
Confidence 8999999999986 5999999875311 11111111 11111 2111 222223445568999999999999999
Q ss_pred ccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCeEEEEccCchhHhh-cCEEEEEECCE
Q 001438 536 VKNPSILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLSTIRN-ADVIAVVQGRK 595 (1077)
Q Consensus 536 ~~~p~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~vtH~~~~~~~-~d~i~~l~~G~ 595 (1077)
+.+|+++||||||++||+.++..+.+.|+++. +++|+|++||+++.+.. ||++++|++|+
T Consensus 153 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~ 214 (214)
T TIGR02673 153 VNSPPLLLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHDLSLVDRVAHRVIILDDGR 214 (214)
T ss_pred hCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEecCCC
Confidence 99999999999999999999999999998874 58999999999999876 99999999985
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein. |
| >TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-37 Score=379.06 Aligned_cols=385 Identities=20% Similarity=0.302 Sum_probs=332.4
Q ss_pred HHhhcccchHHHHHHHHHHHHHhhHHhHHHHHHHHHHHhhccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001438 687 LYSMVRPDWTYGVCGTICAIIAGAQMPLFALGVSQALVAYYMDWDTTQREVKKITILFCCAAVITVIVHAIEHLSFGIMG 766 (1077)
Q Consensus 687 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 766 (1077)
++.+.+++++++..+.+++++.++..+..++.+..+++..+... .......+...++++.++..++.+++.+.....+
T Consensus 5 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 82 (571)
T TIGR02203 5 LWSYVRPYKAGLVLAGVAMILVAATESTLAALLKPLLDDGFGGR--DRSVLWWVPLVVIGLAVLRGICSFVSTYLLSWVS 82 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccC--chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666777777777778877777777887777776544311 1112222344566677777888889999999999
Q ss_pred HHHHHHHHHHHHHHHHcCCccccccccCCchhHHHHHhhcHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 001438 767 ERLTLRVREKMFSAILSNEIGWFDEMDNSSSILASRLESDATLLRTIVVDRSTILIQNFGLVTASFVIAFILNWRITLVV 846 (1077)
Q Consensus 767 ~~~~~~Lr~~l~~~llr~p~~FFD~~~~~~G~IlnR~s~D~~~i~~~l~~~l~~~~~~~~~~~~~i~i~~~~~w~l~l~~ 846 (1077)
.++...+|..+|+++++.|.++|++ .++|++++|+++|++.+++.+...+..++..++.+++.++++++++|.+++++
T Consensus 83 ~~~~~~lr~~l~~~~~~~~~~~~~~--~~~g~~~~~l~~di~~i~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~l~~i~ 160 (571)
T TIGR02203 83 NKVVRDIRVRMFEKLLGLPVSFFDR--QPTGTLLSRITFDSEQVASAATDAFIVLVRETLTVIGLFIVLLYYSWQLTLIV 160 (571)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHhCC--CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 9999999999999999999999995 88999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhHHHHHHHcchHHHHHhcchHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Q 001438 847 VATYPLIISGHISEKLFFQGYGGNLSKAYLKANMLAAEAVSNIRTVAAFCSEDKVLELYSRELVEPSKRSFIRGQIAGIF 926 (1077)
Q Consensus 847 l~~~Pl~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Etl~Gi~tIrAf~~e~~~~~~f~~~~~~~~~~~~~~~~~~~~~ 926 (1077)
+++.|+.++...+..+..++...+..+...+..+.+.|+++|+++||+++.|+++.++|.+..++..+...+.....+..
T Consensus 161 l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (571)
T TIGR02203 161 VVMLPVLSILMRRVSKRLRRISKEIQNSMGQVTTVAEETLQGYRVVKLFGGQAYETRRFDAVSNRNRRLAMKMTSAGSIS 240 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999888888888888888888888888899999999999999999999999999999999999888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHcCCCCccCC
Q 001438 927 YGISQFFIFSSYGLALWYGSVLMGKELASFKSVMKSFMVLIVTALAMGETLALVPDLLKGNQMAASVFEVLDRKTQVIGD 1006 (1077)
Q Consensus 927 ~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~ 1006 (1077)
..+...+..+...+++++|+.++..|.++++.++++..+......|+..+......++.+..+.+|+.++++.+++.+..
T Consensus 241 ~~~~~~~~~~~~~~~~~~g~~~~~~g~lt~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~ 320 (571)
T TIGR02203 241 SPITQLIASLALAVVLFIALFQAQAGSLTAGDFTAFITAMIALIRPLKSLTNVNAPMQRGLAAAESLFTLLDSPPEKDTG 320 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCC
Confidence 88888888888899999999999999999999999999999999999999999999999999999999999876553322
Q ss_pred CCcccccccccEEEeeeeeeCCCCCcccccccceeeeeCCCEEEEECCCCCCHHHHHHHHhhccCCCCCCC
Q 001438 1007 IGEELTNVEGTIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKA 1077 (1077)
Q Consensus 1007 ~~~~~~~~~G~I~f~nVsf~Y~~~~~~~VLk~vsl~I~~GekVaIVGrTGsGKSTLi~lL~Rfyd~~~G~i 1077 (1077)
. ....+..|+|+|+||+|+|+++ +.++|+|+||+|+|||+|||||+||||||||+++|.|+|+|++|+|
T Consensus 321 ~-~~~~~~~~~i~~~~v~f~y~~~-~~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I 389 (571)
T TIGR02203 321 T-RAIERARGDVEFRNVTFRYPGR-DRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQI 389 (571)
T ss_pred C-CCCCCCCCeEEEEEEEEEcCCC-CCccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeE
Confidence 1 1122346789999999999764 3468999999999999999999999999999999999999999986
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes. |
| >PRK14260 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-40 Score=359.60 Aligned_cols=221 Identities=32% Similarity=0.501 Sum_probs=182.7
Q ss_pred ccEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCC-----CccEEEECCeeCCC--CC
Q 001438 380 GHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEP-----LSGEILLDGNNIKG--LD 452 (1077)
Q Consensus 380 ~~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~-----~~G~i~~~g~~~~~--~~ 452 (1077)
+.++++|++++|++ .++|+|+||++++||+++|+|+||||||||+++|+|+++| ++|+|.++|+++.. .+
T Consensus 6 ~~l~~~~l~~~~~~---~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~ 82 (259)
T PRK14260 6 PAIKVKDLSFYYNT---SKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRIN 82 (259)
T ss_pred ceEEEEEEEEEECC---eEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccccccc
Confidence 36899999999963 3589999999999999999999999999999999999985 48999999999864 34
Q ss_pred HHHHhhheeEEccCCCcccccHHHHHhcCCCC---CCHHH----HHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHH
Q 001438 453 LKWLRQQIGLVNQEPALFATTIRENILYGKDD---ATMEE----ITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQ 525 (1077)
Q Consensus 453 ~~~~r~~i~~v~Q~~~lf~~ti~~ni~~~~~~---~~~~~----~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq 525 (1077)
...++++++|++|++.+|+.|++||+.++... ....+ +.++++..++ .+.........+..|||||
T Consensus 83 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l-------~~~l~~~~~~~~~~LS~G~ 155 (259)
T PRK14260 83 INRLRRQIGMVFQRPNPFPMSIYENVAYGVRISAKLPQADLDEIVESALKGAAL-------WQEVKDKLNKSALGLSGGQ 155 (259)
T ss_pred hHhhhhheEEEecccccCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCC-------cchhhhHhcCCcccCCHHH
Confidence 46678899999999999999999999875311 11111 1122222211 1112233456778999999
Q ss_pred HHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEccCchhHhh-cCEEEEEE-----CCEEEEe
Q 001438 526 KQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRN-ADVIAVVQ-----GRKIVKT 599 (1077)
Q Consensus 526 kqri~lARal~~~p~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~vtH~~~~~~~-~d~i~~l~-----~G~i~~~ 599 (1077)
|||++||||++++|+++||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+.. ||++++|+ +|++++.
T Consensus 156 ~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~i~~~~d~i~~l~~~~~~~G~i~~~ 235 (259)
T PRK14260 156 QQRLCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLRSELTIAIVTHNMQQATRVSDFTAFFSTDESRIGQMVEF 235 (259)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCeEEEEeccCCCCceEEEe
Confidence 99999999999999999999999999999999999999988777999999999999865 99999998 5999999
Q ss_pred cChhHHhcCCC
Q 001438 600 GSHEELISNPN 610 (1077)
Q Consensus 600 g~~~~l~~~~~ 610 (1077)
|+++++.+++.
T Consensus 236 ~~~~~~~~~~~ 246 (259)
T PRK14260 236 GVTTQIFSNPL 246 (259)
T ss_pred CCHHHHhcCCC
Confidence 99999876543
|
|
| >PLN03140 ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-38 Score=413.73 Aligned_cols=206 Identities=21% Similarity=0.343 Sum_probs=168.0
Q ss_pred cccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCC---ccEEEECCeeCCCCCHHHHhhheeEEccCCCcccc-
Q 001438 397 VAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPL---SGEILLDGNNIKGLDLKWLRQQIGLVNQEPALFAT- 472 (1077)
Q Consensus 397 ~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~---~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~- 472 (1077)
+.+|+|+|+.++|||+++|+||||||||||+++|+|.++|+ +|+|.+||+++.+.. .|+.++||+|++.+++.
T Consensus 178 ~~IL~~vs~~i~~Ge~~~llGpnGSGKSTLLk~LaG~l~~~~~~~G~I~~nG~~~~~~~---~~~~i~yv~Q~d~~~~~l 254 (1470)
T PLN03140 178 LTILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFV---PRKTSAYISQNDVHVGVM 254 (1470)
T ss_pred ceeccCCeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEechhhc---ccceeEEecccccCCCcC
Confidence 45899999999999999999999999999999999999998 999999999886553 26789999999988865
Q ss_pred cHHHHHhcCCC----C--------CCHHH----------H---HHHHH---------HHhHHHHHhcCccchhhhhcC-C
Q 001438 473 TIRENILYGKD----D--------ATMEE----------I---TRAAK---------LSEAMSFISNLPERFETQVGE-R 517 (1077)
Q Consensus 473 ti~~ni~~~~~----~--------~~~~~----------~---~~~~~---------~~~~~~~i~~l~~g~~t~~~~-~ 517 (1077)
||+||+.|+.. . .+.++ + .+++. .....+. -+|.+-.||.+|+ .
T Consensus 255 TV~EtL~f~a~~~~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~-lGL~~~~~t~vg~~~ 333 (1470)
T PLN03140 255 TVKETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKI-LGLDICKDTIVGDEM 333 (1470)
T ss_pred cHHHHHHHHHHhcCCCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHH-cCCccccCceeCCcc
Confidence 99999987521 0 00111 0 00100 1112222 2455566788875 4
Q ss_pred CCCCChHHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh--CCCeEEEEccCch-h-HhhcCEEEEEEC
Q 001438 518 GIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVM--VGRTTVVVAHRLS-T-IRNADVIAVVQG 593 (1077)
Q Consensus 518 g~~LSgGqkqri~lARal~~~p~illlDEpts~lD~~~~~~i~~~l~~~~--~~~t~i~vtH~~~-~-~~~~d~i~~l~~ 593 (1077)
...||||||||++|||+++.+|++++|||||++||+.+...+.+.|+++. .|+|+|+++|+.. . ...+|+|++|++
T Consensus 334 ~rglSGGerkRVsia~aL~~~p~vlllDEPTsGLDs~t~~~i~~~Lr~la~~~g~Tviis~Hqp~~~i~~lfD~vilL~~ 413 (1470)
T PLN03140 334 IRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATVLMSLLQPAPETFDLFDDIILLSE 413 (1470)
T ss_pred ccCCCcccceeeeehhhhcCCCcEEEEeCCCcCccHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHHhheEEEeeC
Confidence 56899999999999999999999999999999999999999999999874 4899999999974 4 456999999999
Q ss_pred CEEEEecChhHHh
Q 001438 594 RKIVKTGSHEELI 606 (1077)
Q Consensus 594 G~i~~~g~~~~l~ 606 (1077)
|+++..|+.+++.
T Consensus 414 G~ivy~G~~~~~~ 426 (1470)
T PLN03140 414 GQIVYQGPRDHIL 426 (1470)
T ss_pred ceEEEeCCHHHHH
Confidence 9999999999876
|
|
| >PRK14266 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-40 Score=357.15 Aligned_cols=223 Identities=29% Similarity=0.516 Sum_probs=184.2
Q ss_pred cEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccC-----CCccEEEECCeeCCCC--CH
Q 001438 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYE-----PLSGEILLDGNNIKGL--DL 453 (1077)
Q Consensus 381 ~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~-----~~~G~i~~~g~~~~~~--~~ 453 (1077)
.++++||++.|++ .++|+|+||+|++||+++|+||||||||||+++|+|+.+ |++|+|.+||+++... +.
T Consensus 3 ~l~~~~v~~~~~~---~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~ 79 (250)
T PRK14266 3 RIEVENLNTYFDD---AHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVDV 79 (250)
T ss_pred EEEEEeEEEEeCC---eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcccccccH
Confidence 3789999999963 358999999999999999999999999999999999864 4899999999998653 35
Q ss_pred HHHhhheeEEccCCCcccccHHHHHhcCCCC--C-CHHHH----HHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHH
Q 001438 454 KWLRQQIGLVNQEPALFATTIRENILYGKDD--A-TMEEI----TRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQK 526 (1077)
Q Consensus 454 ~~~r~~i~~v~Q~~~lf~~ti~~ni~~~~~~--~-~~~~~----~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqk 526 (1077)
..+|++++|+||++.+|+.|++||+.++... . ..+.. .++++..++. +......+..+.+||||||
T Consensus 80 ~~~~~~i~~~~q~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-------~~l~~~~~~~~~~LS~Gq~ 152 (250)
T PRK14266 80 VELRKKVGMVFQKPNPFPKSIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALW-------DEVKDKLDKSALGLSGGQQ 152 (250)
T ss_pred HHHhhheEEEecCCccCcchHHHHHHhHHhhcCCCCHHHHHHHHHHHHHHcCCc-------hhHHHHHhCCcccCCHHHH
Confidence 5678899999999999999999999875321 1 11212 2222222221 1122234566789999999
Q ss_pred HHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEccCchhHhh-cCEEEEEECCEEEEecChhHH
Q 001438 527 QRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEEL 605 (1077)
Q Consensus 527 qri~lARal~~~p~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l 605 (1077)
||++||||++++|+++||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+.. ||++++|++|++++.|+++++
T Consensus 153 qrv~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~~~~i~~l~~G~i~~~g~~~~~ 232 (250)
T PRK14266 153 QRLCIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKLKEDYTIVIVTHNMQQATRVSKYTSFFLNGEIIESGLTDQI 232 (250)
T ss_pred HHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEECCHHHHHhhcCEEEEEECCeEEEeCCHHHH
Confidence 9999999999999999999999999999999999999988778999999999998866 999999999999999999999
Q ss_pred hcCCCchH
Q 001438 606 ISNPNSAY 613 (1077)
Q Consensus 606 ~~~~~~~~ 613 (1077)
...+...+
T Consensus 233 ~~~~~~~~ 240 (250)
T PRK14266 233 FINPKDKR 240 (250)
T ss_pred HhCCCChH
Confidence 76544443
|
|
| >cd03290 ABCC_SUR1_N The SUR domain 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-40 Score=350.89 Aligned_cols=210 Identities=30% Similarity=0.454 Sum_probs=181.7
Q ss_pred EEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCH----HHHhh
Q 001438 383 EFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDL----KWLRQ 458 (1077)
Q Consensus 383 ~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~----~~~r~ 458 (1077)
.+.|++|+|+.. .++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+. ...|+
T Consensus 2 ~~~~~~~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 79 (218)
T cd03290 2 QVTNGYFSWGSG--LATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSRNRY 79 (218)
T ss_pred eeeeeEEecCCC--CcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCcccccccccccchhhcc
Confidence 467999999744 468999999999999999999999999999999999999999999999998876542 23567
Q ss_pred heeEEccCCCcccccHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHHhccC
Q 001438 459 QIGLVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKN 538 (1077)
Q Consensus 459 ~i~~v~Q~~~lf~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~~~ 538 (1077)
.++|++|+|.+|+.|++||+.++.+ ...++..++++..++.+.++.+|.|+++.++....+||||||||++||||++.+
T Consensus 80 ~i~~~~q~~~~~~~t~~~nl~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qrv~laral~~~ 158 (218)
T cd03290 80 SVAYAAQKPWLLNATVEENITFGSP-FNKQRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRICVARALYQN 158 (218)
T ss_pred eEEEEcCCCccccccHHHHHhhcCc-CCHHHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHHHHHHHHHHHhhC
Confidence 7999999999998899999998653 234444556666666666777899999999989999999999999999999999
Q ss_pred CCEEEEeCcCCCCCHHHHHHHHH--HHHHHh-CCCeEEEEccCchhHhhcCEEEEEECCE
Q 001438 539 PSILLLDEATSALDAESENSVQE--ALDRVM-VGRTTVVVAHRLSTIRNADVIAVVQGRK 595 (1077)
Q Consensus 539 p~illlDEpts~lD~~~~~~i~~--~l~~~~-~~~t~i~vtH~~~~~~~~d~i~~l~~G~ 595 (1077)
|+++||||||++||+.+.+.+.+ .++.+. +++|+|++||+.+.+..||++++|++|+
T Consensus 159 p~illlDEPt~~LD~~~~~~l~~~~ll~~~~~~~~tii~~sH~~~~~~~~d~i~~l~~G~ 218 (218)
T cd03290 159 TNIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVTHKLQYLPHADWIIAMKDGS 218 (218)
T ss_pred CCEEEEeCCccccCHHHHHHHHHHHHHHHHhcCCCEEEEEeCChHHHhhCCEEEEecCCC
Confidence 99999999999999999998887 455443 4789999999999998899999999984
|
The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. |
| >cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-40 Score=352.05 Aligned_cols=205 Identities=25% Similarity=0.483 Sum_probs=170.5
Q ss_pred EEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHHHhhhee
Q 001438 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIG 461 (1077)
Q Consensus 382 i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 461 (1077)
++++|+++.|++ .++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++.. ..+++++
T Consensus 1 l~~~~l~~~~~~---~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~----~~~~~i~ 73 (210)
T cd03269 1 LEVENVTKRFGR---VTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDI----AARNRIG 73 (210)
T ss_pred CEEEEEEEEECC---EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCchhH----HHHccEE
Confidence 478999999963 358999999999999999999999999999999999999999999999987753 4567899
Q ss_pred EEccCCCcccc-cHHHHHhcCCC--CCCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHHhccC
Q 001438 462 LVNQEPALFAT-TIRENILYGKD--DATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKN 538 (1077)
Q Consensus 462 ~v~Q~~~lf~~-ti~~ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~~~ 538 (1077)
|++|++.++++ |++||+.++.. .....+..+ .+.+.++.+ |++........+||||||||++||||++.+
T Consensus 74 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrl~la~al~~~ 146 (210)
T cd03269 74 YLPEERGLYPKMKVIDQLVYLAQLKGLKKEEARR-----RIDEWLERL--ELSEYANKRVEELSKGNQQKVQFIAAVIHD 146 (210)
T ss_pred EeccCCcCCcCCcHHHHHHHHHHHcCCChHHHHH-----HHHHHHHHc--CChHHHhCcHhhCCHHHHHHHHHHHHHhcC
Confidence 99999999876 99999986431 111111111 112223333 344455566789999999999999999999
Q ss_pred CCEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCeEEEEccCchhHhh-cCEEEEEECCEEEEec
Q 001438 539 PSILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTG 600 (1077)
Q Consensus 539 p~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~g 600 (1077)
|+++||||||++||+.+.+.+.+.|+++. +++|+|++||+++.+.. ||++++|++|++++.|
T Consensus 147 p~~lllDEP~~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~ 210 (210)
T cd03269 147 PELLILDEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQMELVEELCDRVLLLNKGRAVLYG 210 (210)
T ss_pred CCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhhhEEEEEeCCEEEecC
Confidence 99999999999999999999999998864 57899999999998865 9999999999998764
|
In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-40 Score=353.03 Aligned_cols=212 Identities=25% Similarity=0.382 Sum_probs=173.0
Q ss_pred cEEEEeEEEEcCCCCC-cccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHH---H
Q 001438 381 HIEFKDVSFCYPSRPD-VAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKW---L 456 (1077)
Q Consensus 381 ~i~~~~v~~~y~~~~~-~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~---~ 456 (1077)
.|+++|++++|++... .++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+... .
T Consensus 6 ~l~~~~l~~~~~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 85 (228)
T PRK10584 6 IVEVHHLKKSVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAKL 85 (228)
T ss_pred eEEEeeeEEEccCCCcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccCCHHHHHHH
Confidence 5899999999974321 25899999999999999999999999999999999999999999999999998776543 2
Q ss_pred -hhheeEEccCCCcccc-cHHHHHhcCC--CCCCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHH
Q 001438 457 -RQQIGLVNQEPALFAT-TIRENILYGK--DDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAIS 532 (1077)
Q Consensus 457 -r~~i~~v~Q~~~lf~~-ti~~ni~~~~--~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lA 532 (1077)
++.++|++|++.+++. |++||+.++. .....++..+ +. .+.++.+ |+.........+||||||||++||
T Consensus 86 ~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~--~~---~~~l~~~--~l~~~~~~~~~~LS~Ge~qrl~la 158 (228)
T PRK10584 86 RAKHVGFVFQSFMLIPTLNALENVELPALLRGESSRQSRN--GA---KALLEQL--GLGKRLDHLPAQLSGGEQQRVALA 158 (228)
T ss_pred HhheEEEEEcccccCCCcCHHHHHHHHHHhcCCCHHHHHH--HH---HHHHHHc--CCHhHhhCChhhCCHHHHHHHHHH
Confidence 3579999999999875 9999998642 1111111111 11 1112222 233334456678999999999999
Q ss_pred HHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh--CCCeEEEEccCchhHhhcCEEEEEECCEEEEe
Q 001438 533 RAIVKNPSILLLDEATSALDAESENSVQEALDRVM--VGRTTVVVAHRLSTIRNADVIAVVQGRKIVKT 599 (1077)
Q Consensus 533 Ral~~~p~illlDEpts~lD~~~~~~i~~~l~~~~--~~~t~i~vtH~~~~~~~~d~i~~l~~G~i~~~ 599 (1077)
|||+.+|+++||||||++||+.+.+.+.+.|+++. .++|+|++||+++.+..||++++|++|++++.
T Consensus 159 ~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~d~i~~l~~g~i~~~ 227 (228)
T PRK10584 159 RAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQLAARCDRRLRLVNGQLQEE 227 (228)
T ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEec
Confidence 99999999999999999999999999999998874 37899999999999888999999999999864
|
|
| >PRK10908 cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-40 Score=351.98 Aligned_cols=208 Identities=29% Similarity=0.474 Sum_probs=171.4
Q ss_pred EEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHH---HHhh
Q 001438 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLK---WLRQ 458 (1077)
Q Consensus 382 i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~---~~r~ 458 (1077)
|+++|++++|++. .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+.. .+|+
T Consensus 2 l~~~~l~~~~~~~--~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~ 79 (222)
T PRK10908 2 IRFEHVSKAYLGG--RQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLRR 79 (222)
T ss_pred EEEEeeEEEecCC--CeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCChhHHHHHHh
Confidence 7899999999522 3589999999999999999999999999999999999999999999999999876543 3678
Q ss_pred heeEEccCCCcc-cccHHHHHhcCCC--CCCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHHh
Q 001438 459 QIGLVNQEPALF-ATTIRENILYGKD--DATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAI 535 (1077)
Q Consensus 459 ~i~~v~Q~~~lf-~~ti~~ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal 535 (1077)
.++|++|+|.++ +.|++||+.++.. ..+.++..+.+ ....+. + |+.........+||||||||++||||+
T Consensus 80 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~--~~~l~~---~--~l~~~~~~~~~~LS~G~~qrv~laral 152 (222)
T PRK10908 80 QIGMIFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRRV--SAALDK---V--GLLDKAKNFPIQLSGGEQQRVGIARAV 152 (222)
T ss_pred heEEEecCccccccccHHHHHHhHHHhcCCCHHHHHHHH--HHHHHH---c--CChhhhhCCchhCCHHHHHHHHHHHHH
Confidence 899999999875 5699999987531 12232222211 112221 1 222334556679999999999999999
Q ss_pred ccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCeEEEEccCchhHhh-cCEEEEEECCEEEE
Q 001438 536 VKNPSILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVK 598 (1077)
Q Consensus 536 ~~~p~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~ 598 (1077)
+.+|++|||||||++||+.+.+.+.+.|+++. ++.|+|++||+++.+.. ||+|++|++|+++.
T Consensus 153 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~ 217 (222)
T PRK10908 153 VNKPAVLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDIGLISRRSYRMLTLSDGHLHG 217 (222)
T ss_pred HcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEcc
Confidence 99999999999999999999999999998874 47899999999999876 99999999999863
|
|
| >PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-40 Score=358.93 Aligned_cols=226 Identities=23% Similarity=0.418 Sum_probs=183.7
Q ss_pred cEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCee-----CCCCCHHH
Q 001438 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNN-----IKGLDLKW 455 (1077)
Q Consensus 381 ~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~-----~~~~~~~~ 455 (1077)
.++++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|++ +.+.+...
T Consensus 6 ~l~~~~l~~~~~~---~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~i~~~~~~~ 82 (258)
T PRK11701 6 LLSVRGLTKLYGP---RKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEAE 82 (258)
T ss_pred eEEEeeeEEEcCC---ceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCccccccccccCCHHH
Confidence 5899999999974 358999999999999999999999999999999999999999999999998 77666544
Q ss_pred ----HhhheeEEccCCC--ccc-ccHHHHHhcCC---CCCCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHH
Q 001438 456 ----LRQQIGLVNQEPA--LFA-TTIRENILYGK---DDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQ 525 (1077)
Q Consensus 456 ----~r~~i~~v~Q~~~--lf~-~ti~~ni~~~~---~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq 525 (1077)
.++.++|++|++. ++. .|+.||+.+.. ......+... ...+.++.++-+ ++..+..+.+|||||
T Consensus 83 ~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-----~~~~~l~~~~l~-~~~~~~~~~~LS~Gq 156 (258)
T PRK11701 83 RRRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGDIRA-----TAGDWLERVEID-AARIDDLPTTFSGGM 156 (258)
T ss_pred HHHHhhcceEEEeeCcccccCccccHHHHHHHHHHHhccCcHHHHHH-----HHHHHHHHcCCC-hhHHhCCCccCCHHH
Confidence 3557999999984 443 48899986431 1111222211 122334444321 235677888999999
Q ss_pred HHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCeEEEEccCchhHhh-cCEEEEEECCEEEEecCh
Q 001438 526 KQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMV--GRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSH 602 (1077)
Q Consensus 526 kqri~lARal~~~p~illlDEpts~lD~~~~~~i~~~l~~~~~--~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~ 602 (1077)
|||++||||++.+|+++||||||++||+.+.+.+.+.|+++.+ +.|+|++||+++.+.. ||+|++|++|++++.|++
T Consensus 157 ~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~~~~~~~~d~i~~l~~g~i~~~~~~ 236 (258)
T PRK11701 157 QQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLAHRLLVMKQGRVVESGLT 236 (258)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCH
Confidence 9999999999999999999999999999999999999988643 7899999999999974 999999999999999999
Q ss_pred hHHhcCCCchHHH
Q 001438 603 EELISNPNSAYAA 615 (1077)
Q Consensus 603 ~~l~~~~~~~~~~ 615 (1077)
+++..++...|.+
T Consensus 237 ~~~~~~~~~~~~~ 249 (258)
T PRK11701 237 DQVLDDPQHPYTQ 249 (258)
T ss_pred HHHhcCCCCHHHH
Confidence 9998664444543
|
|
| >PRK11144 modC molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-40 Score=372.89 Aligned_cols=212 Identities=30% Similarity=0.475 Sum_probs=178.7
Q ss_pred EEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCC----CHHHHh
Q 001438 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGL----DLKWLR 457 (1077)
Q Consensus 382 i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~----~~~~~r 457 (1077)
|++ |++++|++ . .+ |+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++... +....+
T Consensus 2 l~~-~l~k~~~~---~-~~-~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~~~~~~~~~~~~~~~ 75 (352)
T PRK11144 2 LEL-NFKQQLGD---L-CL-TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEK 75 (352)
T ss_pred eEE-EEEEEeCC---E-EE-EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccchhh
Confidence 567 89999963 2 23 89999999999999999999999999999999999999999999998653 234567
Q ss_pred hheeEEccCCCcccc-cHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHHhc
Q 001438 458 QQIGLVNQEPALFAT-TIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIV 536 (1077)
Q Consensus 458 ~~i~~v~Q~~~lf~~-ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~ 536 (1077)
++++|++|++.+|+. |++||+.++......+++.+.++. + |++.....+..+||||||||++|||||+
T Consensus 76 ~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~l~~---------~--gl~~~~~~~~~~LSgGq~qRvalaraL~ 144 (352)
T PRK11144 76 RRIGYVFQDARLFPHYKVRGNLRYGMAKSMVAQFDKIVAL---------L--GIEPLLDRYPGSLSGGEKQRVAIGRALL 144 (352)
T ss_pred CCEEEEcCCcccCCCCcHHHHHHhhhhhhhHHHHHHHHHH---------c--CCchhhhCCcccCCHHHHHHHHHHHHHH
Confidence 789999999999975 999999987543222222222222 2 3334455667899999999999999999
Q ss_pred cCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCeEEEEccCchhHhh-cCEEEEEECCEEEEecChhHHhcCCC
Q 001438 537 KNPSILLLDEATSALDAESENSVQEALDRVMV--GRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELISNPN 610 (1077)
Q Consensus 537 ~~p~illlDEpts~lD~~~~~~i~~~l~~~~~--~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~~ 610 (1077)
.+|+++||||||++||+.+++.+.+.|+++.+ ++|+|+|||+++.+.. ||+|++|++|++++.|+++++..++.
T Consensus 145 ~~p~llLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tii~vTHd~~~~~~~~d~i~~l~~G~i~~~g~~~~i~~~p~ 221 (352)
T PRK11144 145 TAPELLLMDEPLASLDLPRKRELLPYLERLAREINIPILYVSHSLDEILRLADRVVVLEQGKVKAFGPLEEVWASSA 221 (352)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEeCCEEEEecCHHHHHhCcc
Confidence 99999999999999999999999999988753 7899999999998765 99999999999999999999988754
|
|
| >TIGR01192 chvA glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-37 Score=375.91 Aligned_cols=384 Identities=17% Similarity=0.191 Sum_probs=310.7
Q ss_pred HHHHhhcccchHHHHHHHHHHHHHhhHHhHHHHHHHHHHHhhccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001438 685 IKLYSMVRPDWTYGVCGTICAIIAGAQMPLFALGVSQALVAYYMDWDTTQREVKKITILFCCAAVITVIVHAIEHLSFGI 764 (1077)
Q Consensus 685 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 764 (1077)
++++++.+++++.+..+++++++..+..+..++.++.+++..+.... ...+..+++++.++..+..++.......
T Consensus 8 ~~l~~~l~~~k~~~~~~~~~~~~~~~~~~~~p~~~~~iid~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (585)
T TIGR01192 8 VRALSYLNVHKNRVLLIVIANITLAAITIAEPILFGRIIDAISSKSD-----VLPTLALWAGFGVFNTIAYVLVAREADR 82 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc-----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667778888887778888888888888888888888876543211 1111222222333333444444444455
Q ss_pred HHHHHHHHHHHHHHHHHHcCCccccccccCCchhHHHHHhhcHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 001438 765 MGERLTLRVREKMFSAILSNEIGWFDEMDNSSSILASRLESDATLLRTIVVDRSTILIQNFGLVTASFVIAFILNWRITL 844 (1077)
Q Consensus 765 ~~~~~~~~Lr~~l~~~llr~p~~FFD~~~~~~G~IlnR~s~D~~~i~~~l~~~l~~~~~~~~~~~~~i~i~~~~~w~l~l 844 (1077)
...++..++|.++|++++++|++||++ +++|++++|+++|++.+...+...+..++..++.+++.+++++.++|++++
T Consensus 83 ~~~~~~~~lr~~~~~~l~~l~~~~~~~--~~~g~~~s~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l 160 (585)
T TIGR01192 83 LAHGRRATLLTEAFGRIISMPLSWHQQ--RGTSNALHTLLRATETLFGLWLEFMRQHLATFVALFLLIPTAFAMDWRLSI 160 (585)
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHhCC--CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555566667779999999999999995 889999999999999999998888888888888888888889999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhHHHHHHHcchHHHHHhcchHHHHHHHHHHhhhhhHHHHHHHHHHH
Q 001438 845 VVVATYPLIISGHISEKLFFQGYGGNLSKAYLKANMLAAEAVSNIRTVAAFCSEDKVLELYSRELVEPSKRSFIRGQIAG 924 (1077)
Q Consensus 845 ~~l~~~Pl~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Etl~Gi~tIrAf~~e~~~~~~f~~~~~~~~~~~~~~~~~~~ 924 (1077)
++++++|+.++......+..++.....++...+..+.+.|+++|++|||+|+.|+++.++|.+..++..+...+.....+
T Consensus 161 i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (585)
T TIGR01192 161 VLMVLGILYILIAKLVMQRTKNGQAAVEHHYHNVFKHVSDSISNVSVVHSYNRIEAETSALKQFTNNLLSAQYPVLDWWA 240 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999998888777777777766667777788888899999999999999999999999999998888777777666677
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHcCCCCcc
Q 001438 925 IFYGISQFFIFSSYGLALWYGSVLMGKELASFKSVMKSFMVLIVTALAMGETLALVPDLLKGNQMAASVFEVLDRKTQVI 1004 (1077)
Q Consensus 925 ~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~l~~~~~~~ 1004 (1077)
....+...+......+++++|+.++..|.++++.++++..+......++..+......+..+..+.+|+.++++.+++..
T Consensus 241 ~~~~~~~~~~~~~~~~v~~~g~~~v~~g~it~g~l~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~ri~~~~~~~~~~~ 320 (585)
T TIGR01192 241 LASGLNRMASTISMMCILVIGTVLVIKGELSVGEVIAFIGFANLLIGRLDQMSGFITQIFEARAKLEDFFDLEDSVFQRE 320 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccc
Confidence 77777777777778888999999999999999999999888888888999999999999999999999999998765432
Q ss_pred CC-CCcccccccccEEEeeeeeeCCCCCcccccccceeeeeCCCEEEEECCCCCCHHHHHHHHhhccCCCCCCC
Q 001438 1005 GD-IGEELTNVEGTIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKA 1077 (1077)
Q Consensus 1005 ~~-~~~~~~~~~G~I~f~nVsf~Y~~~~~~~VLk~vsl~I~~GekVaIVGrTGsGKSTLi~lL~Rfyd~~~G~i 1077 (1077)
.. .+...++.+|.|+|+||+|+|+++ .++|+|+||+|++||++|||||||||||||+++|.|+|+|++|+|
T Consensus 321 ~~~~~~~~~~~~~~i~~~~v~~~y~~~--~~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i 392 (585)
T TIGR01192 321 EPADAPELPNVKGAVEFRHITFEFANS--SQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQI 392 (585)
T ss_pred CCccCCCCCCCCCeEEEEEEEEECCCC--CccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCCCCCCEE
Confidence 21 111122345789999999999753 247999999999999999999999999999999999999999975
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related. |
| >PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-37 Score=378.77 Aligned_cols=384 Identities=19% Similarity=0.247 Sum_probs=303.4
Q ss_pred HHHhhcccchHHHHHHHHHHHHHhhHHhHHHHHHHHHHHhhccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001438 686 KLYSMVRPDWTYGVCGTICAIIAGAQMPLFALGVSQALVAYYMDWDTTQREVKKITILFCCAAVITVIVHAIEHLSFGIM 765 (1077)
Q Consensus 686 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 765 (1077)
+++.+.+++++++....++.++.....+..++.+..+++..+............+.++++++.++..++.+.+.+.+...
T Consensus 13 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~iid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (592)
T PRK10790 13 RLLAYGSPWRKPLGLAVLMLWVAAAAEVSGPLLISYFIDNMVAKGNLPLGLVAGLAAAYVGLQLLAAGLHYAQSLLFNRA 92 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666677676677777777777777888888888765432211010111122334445556667788888899999
Q ss_pred HHHHHHHHHHHHHHHHHcCCccccccccCCchhHHHHHhhcHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 001438 766 GERLTLRVREKMFSAILSNEIGWFDEMDNSSSILASRLESDATLLRTIVVDRSTILIQNFGLVTASFVIAFILNWRITLV 845 (1077)
Q Consensus 766 ~~~~~~~Lr~~l~~~llr~p~~FFD~~~~~~G~IlnR~s~D~~~i~~~l~~~l~~~~~~~~~~~~~i~i~~~~~w~l~l~ 845 (1077)
+.+...++|.++|+++++.|.+||+. +++|++++|+++|++.+++.+...+..++..+..+++.++++++++|.++++
T Consensus 93 ~~~~~~~lr~~l~~~l~~~~~~~~~~--~~~g~~~~~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~li 170 (592)
T PRK10790 93 AVGVVQQLRTDVMDAALRQPLSAFDT--QPVGQLISRVTNDTEVIRDLYVTVVATVLRSAALIGAMLVAMFSLDWRMALV 170 (592)
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHhCC--CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999995 8999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhHHHHHHHcchHHHHHhcchHHHHHHHHHHhhhhhHHHHHHHHHHHH
Q 001438 846 VVATYPLIISGHISEKLFFQGYGGNLSKAYLKANMLAAEAVSNIRTVAAFCSEDKVLELYSRELVEPSKRSFIRGQIAGI 925 (1077)
Q Consensus 846 ~l~~~Pl~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Etl~Gi~tIrAf~~e~~~~~~f~~~~~~~~~~~~~~~~~~~~ 925 (1077)
++..+|+.++...+..+..+...++.++...+....+.|+++|+++||+|+.|+++.++|.+..++..+...+.....+.
T Consensus 171 ~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (592)
T PRK10790 171 AIMIFPAVLVVMVIYQRYSTPIVRRVRAYLADINDGFNEVINGMSVIQQFRQQARFGERMGEASRSHYMARMQTLRLDGF 250 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 98888888777666666666666777777788888899999999999999999999999998888777776665555444
Q ss_pred H-HHHHHHHHHHH-HHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHcCCCCc
Q 001438 926 F-YGISQFFIFSS-YGLALWYGSVLMGKELASFKSVMKSFMVLIVTALAMGETLALVPDLLKGNQMAASVFEVLDRKTQV 1003 (1077)
Q Consensus 926 ~-~~~~~~~~~~~-~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~l~~~~~~ 1003 (1077)
. .++...+.... .++.+++| . +..|.++++.++++..+......|+..+......++++..+++|+.++++.+++.
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~-~-~~~g~is~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~ 328 (592)
T PRK10790 251 LLRPLLSLFSALILCGLLMLFG-F-SASGTIEVGVLYAFISYLGRLNEPLIELTTQQSMLQQAVVAGERVFELMDGPRQQ 328 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-H-HHCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcc
Confidence 3 23333333322 22333333 3 5688999999999999999999999999999999999999999999999865442
Q ss_pred cCCCCcccccccccEEEeeeeeeCCCCCcccccccceeeeeCCCEEEEECCCCCCHHHHHHHHhhccCCCCCCC
Q 001438 1004 IGDIGEELTNVEGTIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKA 1077 (1077)
Q Consensus 1004 ~~~~~~~~~~~~G~I~f~nVsf~Y~~~~~~~VLk~vsl~I~~GekVaIVGrTGsGKSTLi~lL~Rfyd~~~G~i 1077 (1077)
.. ....++.+|+|+|+||+|+||++ .++|+|+||+|+|||++||||+||||||||+++|.|+|+|++|+|
T Consensus 329 ~~--~~~~~~~~~~i~~~~v~f~y~~~--~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I 398 (592)
T PRK10790 329 YG--NDDRPLQSGRIDIDNVSFAYRDD--NLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEI 398 (592)
T ss_pred CC--CCccCCCCCeEEEEEEEEEeCCC--CceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceE
Confidence 11 11122345889999999999753 358999999999999999999999999999999999999999986
|
|
| >TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-40 Score=359.38 Aligned_cols=216 Identities=26% Similarity=0.442 Sum_probs=181.3
Q ss_pred EEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHHHhhhee
Q 001438 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIG 461 (1077)
Q Consensus 382 i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 461 (1077)
++++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+...+++.++
T Consensus 2 l~~~~l~~~~~~---~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 78 (256)
T TIGR03873 2 LRLSRVSWSAGG---RLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARARRVA 78 (256)
T ss_pred ceEEeEEEEECC---EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEEcccCCHHHHhhheE
Confidence 689999999964 35999999999999999999999999999999999999999999999999998888778888899
Q ss_pred EEccCCCc-ccccHHHHHhcCCCCC------CHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHH
Q 001438 462 LVNQEPAL-FATTIRENILYGKDDA------TMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRA 534 (1077)
Q Consensus 462 ~v~Q~~~l-f~~ti~~ni~~~~~~~------~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARa 534 (1077)
|++|++.+ +..|++||+.++.... ..++ ...+ +.+.++.+ |+.......+..||||||||++||||
T Consensus 79 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~--~~~~---~~~~l~~~--~l~~~~~~~~~~LS~G~~qrl~la~a 151 (256)
T TIGR03873 79 LVEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPH--DAAV---VDRALART--ELSHLADRDMSTLSGGERQRVHVARA 151 (256)
T ss_pred EecccCccCCCCCHHHHHHhcchhhhhhccCCCHH--HHHH---HHHHHHHc--CcHhhhcCCcccCCHHHHHHHHHHHH
Confidence 99999865 4569999998763110 0011 0011 11222222 23334556778999999999999999
Q ss_pred hccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCeEEEEccCchhHh-hcCEEEEEECCEEEEecChhHHhc
Q 001438 535 IVKNPSILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLSTIR-NADVIAVVQGRKIVKTGSHEELIS 607 (1077)
Q Consensus 535 l~~~p~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~vtH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~ 607 (1077)
++.+|+++||||||++||+.+.+.+.+.|+++. +++|+|++||+++.+. .||+|++|++|++++.|+++++..
T Consensus 152 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 226 (256)
T TIGR03873 152 LAQEPKLLLLDEPTNHLDVRAQLETLALVRELAATGVTVVAALHDLNLAASYCDHVVVLDGGRVVAAGPPREVLT 226 (256)
T ss_pred HhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCEEEecCHHHhhC
Confidence 999999999999999999999999999998875 4789999999999995 599999999999999999988754
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. |
| >COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-40 Score=348.02 Aligned_cols=231 Identities=32% Similarity=0.552 Sum_probs=186.7
Q ss_pred EEEEeEEEEcCCCC-CcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccC-C----CccEEEECCeeCCCCCHHH
Q 001438 382 IEFKDVSFCYPSRP-DVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYE-P----LSGEILLDGNNIKGLDLKW 455 (1077)
Q Consensus 382 i~~~~v~~~y~~~~-~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~-~----~~G~i~~~g~~~~~~~~~~ 455 (1077)
++++|++.+|.... ...+++||||++++||++||||+|||||||+.++|+|+++ | .+|+|.++|+|+-.++.++
T Consensus 2 L~v~nL~v~f~~~~g~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~~ 81 (316)
T COG0444 2 LEVKNLSVSFPTDAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKE 81 (316)
T ss_pred ceEeeeEEEEecCCccEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHHH
Confidence 57899999997542 3568999999999999999999999999999999999998 4 5799999999999999875
Q ss_pred Hh----hheeEEccCCCc-cc--ccHHHHH----hcCCCC-CCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCCh
Q 001438 456 LR----QQIGLVNQEPAL-FA--TTIRENI----LYGKDD-ATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSG 523 (1077)
Q Consensus 456 ~r----~~i~~v~Q~~~l-f~--~ti~~ni----~~~~~~-~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSg 523 (1077)
+| +.|++|+|+|.- +| .||.+-+ ...... ...+...++. ++++.+ .+|+ -+..+...+.+|||
T Consensus 82 ~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h~~~~~~~ea~~~a~---~~L~~V-gi~~-~~~~~~~YPhelSG 156 (316)
T COG0444 82 LRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAI---ELLELV-GIPD-PERRLKSYPHELSG 156 (316)
T ss_pred HHhhcCceEEEEEcCchhhcCChhhHHHHHHHHHHHhhcchhhHHHHHHHH---HHHHHc-CCCC-HHHHHhhCCcccCC
Confidence 43 469999999842 33 1554444 322111 1111122222 223323 3443 23466778899999
Q ss_pred HHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh--CCCeEEEEccCchhHhh-cCEEEEEECCEEEEec
Q 001438 524 GQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVM--VGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTG 600 (1077)
Q Consensus 524 Gqkqri~lARal~~~p~illlDEpts~lD~~~~~~i~~~l~~~~--~~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~g 600 (1077)
|||||+.||-|++.+|++||.||||+|||..++.+|.+.|+++. .|.|+|+||||+..+.. ||||+||..|+|+|.|
T Consensus 157 GMrQRV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilITHDl~vva~~aDri~VMYaG~iVE~g 236 (316)
T COG0444 157 GMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLGVVAEIADRVAVMYAGRIVEEG 236 (316)
T ss_pred cHHHHHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcceEEEEECcEEEEeC
Confidence 99999999999999999999999999999999999999999875 48999999999998865 9999999999999999
Q ss_pred ChhHHhcCCCchHHHHH
Q 001438 601 SHEELISNPNSAYAALV 617 (1077)
Q Consensus 601 ~~~~l~~~~~~~~~~~~ 617 (1077)
+.+++..++...|.+..
T Consensus 237 ~~~~i~~~P~HPYT~~L 253 (316)
T COG0444 237 PVEEIFKNPKHPYTRGL 253 (316)
T ss_pred CHHHHhcCCCChHHHHH
Confidence 99999999999998654
|
|
| >PRK14255 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-39 Score=356.72 Aligned_cols=225 Identities=30% Similarity=0.498 Sum_probs=182.9
Q ss_pred cEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccC--C---CccEEEECCeeCCC--CCH
Q 001438 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYE--P---LSGEILLDGNNIKG--LDL 453 (1077)
Q Consensus 381 ~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~--~---~~G~i~~~g~~~~~--~~~ 453 (1077)
.|+++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++ | ++|+|.++|+++.. .+.
T Consensus 5 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 81 (252)
T PRK14255 5 IITSSDVHLFYGK---FEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNEDV 81 (252)
T ss_pred eEEEEeEEEEECC---eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEcccccccH
Confidence 5899999999974 358999999999999999999999999999999999875 4 59999999999864 234
Q ss_pred HHHhhheeEEccCCCcccccHHHHHhcCCC--CC-CHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHH
Q 001438 454 KWLRQQIGLVNQEPALFATTIRENILYGKD--DA-TMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIA 530 (1077)
Q Consensus 454 ~~~r~~i~~v~Q~~~lf~~ti~~ni~~~~~--~~-~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~ 530 (1077)
..+++.++|++|++.+|+.|++||+.++.. .. ..+...+. .....+.+ .+.+++.........+||||||||++
T Consensus 82 ~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~--~~~~l~~~-~l~~~i~~~~~~~~~~LS~Gq~qrv~ 158 (252)
T PRK14255 82 VQLRKQVGMVFQQPNPFPFSIYENVIYGLRLAGVKDKAVLDEA--VETSLKQA-AIWDEVKDHLHESALSLSGGQQQRVC 158 (252)
T ss_pred HHhcCeEEEEECCCccCCCcHHHHHHHHHHHcCCCCHHHHHHH--HHHHHHHc-CCccchhhHHhcCcccCCHHHHHHHH
Confidence 566788999999999999999999987531 11 11111111 11111111 12222334456677899999999999
Q ss_pred HHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEccCchhHhh-cCEEEEEECCEEEEecChhHHhcCC
Q 001438 531 ISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELISNP 609 (1077)
Q Consensus 531 lARal~~~p~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~ 609 (1077)
||||++.+|+++||||||++||+.+++.+.+.|+++.+++|+|+|||+++.+.. ||+|++|++|++++.|++.++..++
T Consensus 159 laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~ 238 (252)
T PRK14255 159 IARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRDQYTIILVTHSMHQASRISDKTAFFLTGNLIEFADTKQMFLNP 238 (252)
T ss_pred HHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHhCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcCC
Confidence 999999999999999999999999999999999988767899999999999865 9999999999999999999987664
Q ss_pred Cc
Q 001438 610 NS 611 (1077)
Q Consensus 610 ~~ 611 (1077)
..
T Consensus 239 ~~ 240 (252)
T PRK14255 239 KE 240 (252)
T ss_pred CC
Confidence 43
|
|
| >PRK14265 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-39 Score=357.20 Aligned_cols=221 Identities=32% Similarity=0.483 Sum_probs=183.4
Q ss_pred ccEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCC-----CccEEEECCeeCCCC--C
Q 001438 380 GHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEP-----LSGEILLDGNNIKGL--D 452 (1077)
Q Consensus 380 ~~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~-----~~G~i~~~g~~~~~~--~ 452 (1077)
..|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|+++... +
T Consensus 19 ~~l~~~nl~~~~~~---~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~~~ 95 (274)
T PRK14265 19 SVFEVEGVKVFYGG---FLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQIN 95 (274)
T ss_pred ceEEEeeEEEEeCC---eEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecccccch
Confidence 46999999999974 3589999999999999999999999999999999999863 699999999998643 3
Q ss_pred HHHHhhheeEEccCCCcccccHHHHHhcCCCCCC-----HHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHH
Q 001438 453 LKWLRQQIGLVNQEPALFATTIRENILYGKDDAT-----MEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQ 527 (1077)
Q Consensus 453 ~~~~r~~i~~v~Q~~~lf~~ti~~ni~~~~~~~~-----~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkq 527 (1077)
...+|++++|++|++.+|+.|+.||+.++..... .+.+.++++..+ +.+++.......+.+|||||||
T Consensus 96 ~~~~~~~i~~v~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~-------l~~~l~~~~~~~~~~LSgGq~q 168 (274)
T PRK14265 96 SVKLRRQVGMVFQRPNPFPKSIYENIAFAPRANGYKGNLDELVEDSLRRAA-------IWEEVKDKLKEKGTALSGGQQQ 168 (274)
T ss_pred hHHHhhcEEEEccCCccccccHHHHHHhHHHhcCchHHHHHHHHHHHHHcc-------cchhhHHHhcCCcccCCHHHHH
Confidence 4467789999999999998899999987632111 111122222222 2122233455677899999999
Q ss_pred HHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEccCchhHhh-cCEEEEEE---------CCEEE
Q 001438 528 RIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRN-ADVIAVVQ---------GRKIV 597 (1077)
Q Consensus 528 ri~lARal~~~p~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~vtH~~~~~~~-~d~i~~l~---------~G~i~ 597 (1077)
|++||||++.+|++|||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+.. ||++++|+ +|+++
T Consensus 169 rv~LAraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~~~~~~~~G~~~ 248 (274)
T PRK14265 169 RLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKEQYTIIMVTHNMQQASRVADWTAFFNTEIDEYGKRRGKLV 248 (274)
T ss_pred HHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEecccccccccCceEE
Confidence 999999999999999999999999999999999999988778999999999998865 99999998 89999
Q ss_pred EecChhHHhcCCC
Q 001438 598 KTGSHEELISNPN 610 (1077)
Q Consensus 598 ~~g~~~~l~~~~~ 610 (1077)
+.|+++++..++.
T Consensus 249 ~~g~~~~~~~~~~ 261 (274)
T PRK14265 249 EFSPTEQMFGSPQ 261 (274)
T ss_pred EeCCHHHHHhCCC
Confidence 9999999876544
|
|
| >TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-39 Score=352.59 Aligned_cols=215 Identities=35% Similarity=0.520 Sum_probs=179.7
Q ss_pred EEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHHHhhhee
Q 001438 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIG 461 (1077)
Q Consensus 382 i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 461 (1077)
++++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. .++.++
T Consensus 1 i~i~~l~~~~~~---~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~i~g~~~~~~~~--~~~~i~ 75 (237)
T TIGR00968 1 IEIANISKRFGS---FQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHA--RDRKIG 75 (237)
T ss_pred CEEEEEEEEECC---eeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCh--hhcCEE
Confidence 478999999974 359999999999999999999999999999999999999999999999999876543 467899
Q ss_pred EEccCCCcccc-cHHHHHhcCCCC--CCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHHhccC
Q 001438 462 LVNQEPALFAT-TIRENILYGKDD--ATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKN 538 (1077)
Q Consensus 462 ~v~Q~~~lf~~-ti~~ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~~~ 538 (1077)
|+||+|.+|++ |++||+.++... .+.....+ ...+.++.++ +.........+||||||||++||||++++
T Consensus 76 ~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~-----~~~~~l~~~~--l~~~~~~~~~~lS~G~~qrl~laral~~~ 148 (237)
T TIGR00968 76 FVFQHYALFKHLTVRDNIAFGLEIRKHPKAKIKA-----RVEELLELVQ--LEGLGDRYPNQLSGGQRQRVALARALAVE 148 (237)
T ss_pred EEecChhhccCCcHHHHHHhHHHhcCCCHHHHHH-----HHHHHHHHcC--CHhHhhCChhhCCHHHHHHHHHHHHHhcC
Confidence 99999999976 999999875421 11111111 1122233332 22334556678999999999999999999
Q ss_pred CCEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCeEEEEccCchhHhh-cCEEEEEECCEEEEecChhHHhcC
Q 001438 539 PSILLLDEATSALDAESENSVQEALDRVMV--GRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELISN 608 (1077)
Q Consensus 539 p~illlDEpts~lD~~~~~~i~~~l~~~~~--~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 608 (1077)
|+++||||||++||+++++.+.+.|++..+ ++|+|++||+++.+.. ||++++|++|++++.|+++++.+.
T Consensus 149 p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~~~~ 221 (237)
T TIGR00968 149 PQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQEEAMEVADRIVVMSNGKIEQIGSPDEVYDH 221 (237)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEECCEEEEecCHHHHHcC
Confidence 999999999999999999999999988653 7999999999998765 999999999999999999998754
|
|
| >PRK14258 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-39 Score=357.05 Aligned_cols=226 Identities=28% Similarity=0.503 Sum_probs=183.9
Q ss_pred ccEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCC-----ccEEEECCeeCCC--CC
Q 001438 380 GHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPL-----SGEILLDGNNIKG--LD 452 (1077)
Q Consensus 380 ~~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~-----~G~i~~~g~~~~~--~~ 452 (1077)
+.|+++|++++|++ ..+|+|+||++++||+++|+||||||||||+++|+|+++|+ +|+|.++|+++.. .+
T Consensus 6 ~~l~~~nl~~~~~~---~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~~~ 82 (261)
T PRK14258 6 PAIKVNNLSFYYDT---QKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRVN 82 (261)
T ss_pred ceEEEeeEEEEeCC---eeEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhccccc
Confidence 46999999999964 25899999999999999999999999999999999999985 8999999999853 34
Q ss_pred HHHHhhheeEEccCCCcccccHHHHHhcCCCC--C-CHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHH
Q 001438 453 LKWLRQQIGLVNQEPALFATTIRENILYGKDD--A-TMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRI 529 (1077)
Q Consensus 453 ~~~~r~~i~~v~Q~~~lf~~ti~~ni~~~~~~--~-~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri 529 (1077)
...+|+.++|++|++.+|+.|++||+.++... . +..+..+. .....+.+ .+.+..+...++.+.+||||||||+
T Consensus 83 ~~~~~~~i~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~--~~~~l~~~-~l~~~~~~~~~~~~~~LSgGq~qrv 159 (261)
T PRK14258 83 LNRLRRQVSMVHPKPNLFPMSVYDNVAYGVKIVGWRPKLEIDDI--VESALKDA-DLWDEIKHKIHKSALDLSGGQQQRL 159 (261)
T ss_pred hHHhhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHH--HHHHHHHc-CCcchhhhHhcCCcccCCHHHHHHH
Confidence 45678889999999999999999999865211 1 11111111 11111111 1222223345667789999999999
Q ss_pred HHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh--CCCeEEEEccCchhHhh-cCEEEEEEC-----CEEEEecC
Q 001438 530 AISRAIVKNPSILLLDEATSALDAESENSVQEALDRVM--VGRTTVVVAHRLSTIRN-ADVIAVVQG-----RKIVKTGS 601 (1077)
Q Consensus 530 ~lARal~~~p~illlDEpts~lD~~~~~~i~~~l~~~~--~~~t~i~vtH~~~~~~~-~d~i~~l~~-----G~i~~~g~ 601 (1077)
+||||++++|+++||||||++||+.+.+.+.+.|+++. .++|+|+|||+++.+.. ||+|++|++ |++++.|+
T Consensus 160 ~laral~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~~~i~~~~d~i~~l~~~~~~~G~i~~~~~ 239 (261)
T PRK14258 160 CIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLHQVSRLSDFTAFFKGNENRIGQLVEFGL 239 (261)
T ss_pred HHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhcCEEEEEccCCCcCceEEEeCC
Confidence 99999999999999999999999999999999998863 48999999999999865 999999999 99999999
Q ss_pred hhHHhcCCCc
Q 001438 602 HEELISNPNS 611 (1077)
Q Consensus 602 ~~~l~~~~~~ 611 (1077)
++++..++..
T Consensus 240 ~~~~~~~~~~ 249 (261)
T PRK14258 240 TKKIFNSPHD 249 (261)
T ss_pred HHHHHhCCCC
Confidence 9999775443
|
|
| >TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-40 Score=367.99 Aligned_cols=204 Identities=23% Similarity=0.413 Sum_probs=170.3
Q ss_pred cccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHHHhhheeEEccCCCcccc-cHH
Q 001438 397 VAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIGLVNQEPALFAT-TIR 475 (1077)
Q Consensus 397 ~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~-ti~ 475 (1077)
.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. ....+|+++||+||++.+++. |++
T Consensus 6 ~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~-~~~~~~~~i~~~~q~~~~~~~~tv~ 84 (302)
T TIGR01188 6 FKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVR-EPRKVRRSIGIVPQYASVDEDLTGR 84 (302)
T ss_pred eeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccc-CHHHHHhhcEEecCCCCCCCCCcHH
Confidence 358999999999999999999999999999999999999999999999999875 345678889999999999876 999
Q ss_pred HHHhcCCC--CCCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHHhccCCCEEEEeCcCCCCCH
Q 001438 476 ENILYGKD--DATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDA 553 (1077)
Q Consensus 476 ~ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~~~p~illlDEpts~lD~ 553 (1077)
||+.+... ..+.++..+. ...+ ++.+ |+......+..+||||||||++||||++.+|++|||||||++||+
T Consensus 85 e~l~~~~~~~~~~~~~~~~~--~~~~---l~~~--~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~ 157 (302)
T TIGR01188 85 ENLEMMGRLYGLPKDEAEER--AEEL---LELF--ELGEAADRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDP 157 (302)
T ss_pred HHHHHHHHHcCCCHHHHHHH--HHHH---HHHc--CChhHhCCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCH
Confidence 99986421 1122221111 1122 2222 233334556678999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHh-CCCeEEEEccCchhHhh-cCEEEEEECCEEEEecChhHHhcC
Q 001438 554 ESENSVQEALDRVM-VGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELISN 608 (1077)
Q Consensus 554 ~~~~~i~~~l~~~~-~~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 608 (1077)
.+.+.+.+.|+++. +|+|+|++||+++.+.. ||+|++|++|++++.|+++++.+.
T Consensus 158 ~~~~~l~~~l~~~~~~g~tvi~~sH~~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~ 214 (302)
T TIGR01188 158 RTRRAIWDYIRALKEEGVTILLTTHYMEEADKLCDRIAIIDHGRIIAEGTPEELKRR 214 (302)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHHHHh
Confidence 99999999998874 58999999999999875 999999999999999999998653
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc. |
| >cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-40 Score=348.56 Aligned_cols=205 Identities=34% Similarity=0.537 Sum_probs=170.8
Q ss_pred EEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCC--CCHHHHhhh
Q 001438 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKG--LDLKWLRQQ 459 (1077)
Q Consensus 382 i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~--~~~~~~r~~ 459 (1077)
++++|++++|++ .++++++||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++.. .+...++++
T Consensus 1 l~~~~l~~~~~~---~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 77 (213)
T cd03262 1 IEIKNLHKSFGD---FHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINELRQK 77 (213)
T ss_pred CEEEEEEEEECC---eEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccchhHHHHHhc
Confidence 478999999964 358999999999999999999999999999999999999999999999999853 344567889
Q ss_pred eeEEccCCCccc-ccHHHHHhcCCC---CCCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHHh
Q 001438 460 IGLVNQEPALFA-TTIRENILYGKD---DATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAI 535 (1077)
Q Consensus 460 i~~v~Q~~~lf~-~ti~~ni~~~~~---~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal 535 (1077)
++|++|++.+|+ .|++||+.++.. ....++..+.+ .+.++.+ |++........+||||||||++||||+
T Consensus 78 i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~-----~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~la~al 150 (213)
T cd03262 78 VGMVFQQFNLFPHLTVLENITLAPIKVKGMSKAEAEERA-----LELLEKV--GLADKADAYPAQLSGGQQQRVAIARAL 150 (213)
T ss_pred ceEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHH-----HHHHHHc--CCHhHhhhCccccCHHHHHHHHHHHHH
Confidence 999999999987 599999987531 12222211111 1222222 344455667789999999999999999
Q ss_pred ccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCeEEEEccCchhHhh-cCEEEEEECCEE
Q 001438 536 VKNPSILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLSTIRN-ADVIAVVQGRKI 596 (1077)
Q Consensus 536 ~~~p~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~vtH~~~~~~~-~d~i~~l~~G~i 596 (1077)
+.+|+++||||||++||+.+.+.+.+.|+++. .++|+|++||+++.+.. ||+|++|++|++
T Consensus 151 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~~~~~~~~~d~i~~l~~g~i 213 (213)
T cd03262 151 AMNPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMGFAREVADRVIFMDDGRI 213 (213)
T ss_pred hcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 99999999999999999999999999999875 47999999999999865 999999999974
|
Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM |
| >cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-40 Score=351.65 Aligned_cols=202 Identities=29% Similarity=0.517 Sum_probs=164.4
Q ss_pred EEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHHHhhheeE
Q 001438 383 EFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIGL 462 (1077)
Q Consensus 383 ~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~ 462 (1077)
+++|++++|++ .++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++. .+|++++|
T Consensus 1 ~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~-----~~~~~i~~ 72 (213)
T cd03235 1 EVEDLTVSYGG---HPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLE-----KERKRIGY 72 (213)
T ss_pred CcccceeEECC---EEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCccHH-----HHHhheEE
Confidence 36899999964 35899999999999999999999999999999999999999999999998764 46778999
Q ss_pred EccCCCc---ccccHHHHHhcCCCCC------CHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHH
Q 001438 463 VNQEPAL---FATTIRENILYGKDDA------TMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISR 533 (1077)
Q Consensus 463 v~Q~~~l---f~~ti~~ni~~~~~~~------~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lAR 533 (1077)
++|++.+ ++.|++||+.++.... ..++..+ +.... ++.+ |++........+||||||||++|||
T Consensus 73 v~q~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~--~~~~~---l~~~--~l~~~~~~~~~~LSgG~~qrv~la~ 145 (213)
T cd03235 73 VPQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKA--KVDEA---LERV--GLSELADRQIGELSGGQQQRVLLAR 145 (213)
T ss_pred eccccccccCCCCcHHHHHHhccccccccccCCCHHHHH--HHHHH---HHHc--CCHHHHhCCcccCCHHHHHHHHHHH
Confidence 9999976 5679999998764211 0111111 11112 2222 2333345567789999999999999
Q ss_pred HhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCeEEEEccCchhHhh-cCEEEEEECCEEEEec
Q 001438 534 AIVKNPSILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTG 600 (1077)
Q Consensus 534 al~~~p~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~g 600 (1077)
|++.+|+++||||||++||+.+.+.+.+.|+++. +++|+|++||+++.+.. ||+|++|++| +++.|
T Consensus 146 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~~-~~~~g 213 (213)
T cd03235 146 ALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRREGMTILVVTHDLGLVLEYFDRVLLLNRT-VVASG 213 (213)
T ss_pred HHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEcCc-EeecC
Confidence 9999999999999999999999999999998875 68999999999999865 9999999986 55543
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. |
| >PRK14246 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-39 Score=354.90 Aligned_cols=231 Identities=28% Similarity=0.480 Sum_probs=185.9
Q ss_pred ccEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECC------eeCCCCCH
Q 001438 380 GHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDG------NNIKGLDL 453 (1077)
Q Consensus 380 ~~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g------~~~~~~~~ 453 (1077)
..++++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++| +++...+.
T Consensus 9 ~~i~~~~~~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~g~~~~~~~~ 85 (257)
T PRK14246 9 DVFNISRLYLYIND---KAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQIDA 85 (257)
T ss_pred hheeeeeEEEecCC---ceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEECCcccccCCH
Confidence 35899999999974 3589999999999999999999999999999999999999997666655 56666666
Q ss_pred HHHhhheeEEccCCCcccc-cHHHHHhcCCCC--C-CHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHH
Q 001438 454 KWLRQQIGLVNQEPALFAT-TIRENILYGKDD--A-TMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRI 529 (1077)
Q Consensus 454 ~~~r~~i~~v~Q~~~lf~~-ti~~ni~~~~~~--~-~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri 529 (1077)
..+|++++|++|+|.+|++ |++||+.++... . ..++..+. ...+.+.+ .+........+..+..||||||||+
T Consensus 86 ~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~--~~~~~~~~-~l~~~~~~~~~~~~~~LS~G~~qrl 162 (257)
T PRK14246 86 IKLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKI--VEECLRKV-GLWKEVYDRLNSPASQLSGGQQQRL 162 (257)
T ss_pred HHHhcceEEEccCCccCCCCcHHHHHHHHHHhcCCCCHHHHHHH--HHHHHHHc-CCCccchhhhcCCcccCCHHHHHHH
Confidence 7788899999999999976 999999876321 1 12222111 11111111 1211111234567789999999999
Q ss_pred HHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEccCchhHh-hcCEEEEEECCEEEEecChhHHhcC
Q 001438 530 AISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIR-NADVIAVVQGRKIVKTGSHEELISN 608 (1077)
Q Consensus 530 ~lARal~~~p~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~vtH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~~ 608 (1077)
+||||++.+|+++||||||++||+.+++.+.+.|.++.+++|+|++||+++.+. .||++++|++|++++.|+++++.++
T Consensus 163 ~laral~~~P~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiilvsh~~~~~~~~~d~v~~l~~g~i~~~g~~~~~~~~ 242 (257)
T PRK14246 163 TIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKNEIAIVIVSHNPQQVARVADYVAFLYNGELVEWGSSNEIFTS 242 (257)
T ss_pred HHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCcEEEEEECCHHHHHHhCCEEEEEECCEEEEECCHHHHHhC
Confidence 999999999999999999999999999999999998877899999999999985 5999999999999999999999876
Q ss_pred CCchHHHH
Q 001438 609 PNSAYAAL 616 (1077)
Q Consensus 609 ~~~~~~~~ 616 (1077)
+...|.+.
T Consensus 243 ~~~~~~~~ 250 (257)
T PRK14246 243 PKNELTEK 250 (257)
T ss_pred CCcHHHHH
Confidence 55545443
|
|
| >PRK11176 lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-37 Score=375.96 Aligned_cols=386 Identities=18% Similarity=0.314 Sum_probs=317.1
Q ss_pred HHHhhcccchHHHHHHHHHHHHHhhHHhHHHHHHHHHHHhhccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001438 686 KLYSMVRPDWTYGVCGTICAIIAGAQMPLFALGVSQALVAYYMDWDTTQREVKKITILFCCAAVITVIVHAIEHLSFGIM 765 (1077)
Q Consensus 686 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 765 (1077)
.++++.+++++.+....++.++........++.+..+++..+.... ..........+++++++..++.+++.++....
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 92 (582)
T PRK11176 15 RLWPTIAPFKAGLIVAGVALILNAASDTFMLSLLKPLLDDGFGKAD--RSVLKWMPLVVIGLMILRGITSFISSYCISWV 92 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555566666665555544444444444455555555554432110 11111222334445666777778888888899
Q ss_pred HHHHHHHHHHHHHHHHHcCCccccccccCCchhHHHHHhhcHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 001438 766 GERLTLRVREKMFSAILSNEIGWFDEMDNSSSILASRLESDATLLRTIVVDRSTILIQNFGLVTASFVIAFILNWRITLV 845 (1077)
Q Consensus 766 ~~~~~~~Lr~~l~~~llr~p~~FFD~~~~~~G~IlnR~s~D~~~i~~~l~~~l~~~~~~~~~~~~~i~i~~~~~w~l~l~ 845 (1077)
+.+....+|.++|+++++.|.++|+. ..+|++++|+++|++.++..+...+..++..++.+++.++++++++|.++++
T Consensus 93 ~~~~~~~lr~~~~~~l~~~~~~~~~~--~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~ 170 (582)
T PRK11176 93 SGKVVMTMRRRLFGHMMGMPVSFFDK--QSTGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQLSLI 170 (582)
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHhCC--CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999995 8999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhHHHHHHHcchHHHHHhcchHHHHHHHHHHhhhhhHHHHHHHHHHHH
Q 001438 846 VVATYPLIISGHISEKLFFQGYGGNLSKAYLKANMLAAEAVSNIRTVAAFCSEDKVLELYSRELVEPSKRSFIRGQIAGI 925 (1077)
Q Consensus 846 ~l~~~Pl~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Etl~Gi~tIrAf~~e~~~~~~f~~~~~~~~~~~~~~~~~~~~ 925 (1077)
+++++|+.++......+.+++...+.++...+....+.|.++|+++||+|+.|+++.++|.+..++..+...+.....++
T Consensus 171 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (582)
T PRK11176 171 LIVIAPIVSIAIRVVSKRFRNISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNRMRQQGMKMVSASSI 250 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999988888777777777777788888888889999999999999999999999999999999999988888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHcCCCCccC
Q 001438 926 FYGISQFFIFSSYGLALWYGSVLMGKELASFKSVMKSFMVLIVTALAMGETLALVPDLLKGNQMAASVFEVLDRKTQVIG 1005 (1077)
Q Consensus 926 ~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~l~~~~~~~~ 1005 (1077)
...+.+.+..++..+++++|+.++..|.++++.++.+..+......|+..+......++++..+.+|+.++++.+++.+.
T Consensus 251 ~~~~~~~~~~~~~~~i~~~g~~~~~~g~is~g~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~~~~~~~~~~ 330 (582)
T PRK11176 251 SDPIIQLIASLALAFVLYAASFPSVMDTLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDLEQEKDE 330 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCC
Confidence 88888888888888889999999999999999999888888888889999999999999999999999999986654322
Q ss_pred CCCcccccccccEEEeeeeeeCCCCCcccccccceeeeeCCCEEEEECCCCCCHHHHHHHHhhccCCCCCCC
Q 001438 1006 DIGEELTNVEGTIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKA 1077 (1077)
Q Consensus 1006 ~~~~~~~~~~G~I~f~nVsf~Y~~~~~~~VLk~vsl~I~~GekVaIVGrTGsGKSTLi~lL~Rfyd~~~G~i 1077 (1077)
. ....++..|+|+|+||+|+||++ +.++|+|+||+|+|||++||||+||||||||+++|+|+|+|++|+|
T Consensus 331 ~-~~~~~~~~~~i~~~~vsf~y~~~-~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~~G~I 400 (582)
T PRK11176 331 G-KRVIERAKGDIEFRNVTFTYPGK-EVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEI 400 (582)
T ss_pred C-CcCCCCCCCeEEEEEEEEecCCC-CCccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCCCCceE
Confidence 1 11223445789999999999764 3468999999999999999999999999999999999999999976
|
|
| >PRK14264 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-39 Score=361.79 Aligned_cols=224 Identities=28% Similarity=0.519 Sum_probs=185.7
Q ss_pred ccEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccC-----CCccEEEECCeeCCCC--C
Q 001438 380 GHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYE-----PLSGEILLDGNNIKGL--D 452 (1077)
Q Consensus 380 ~~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~-----~~~G~i~~~g~~~~~~--~ 452 (1077)
..|+++|++++|++ .++|+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|+++... +
T Consensus 44 ~~l~i~nl~~~~~~---~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~~~~~ 120 (305)
T PRK14264 44 AKLSVEDLDVYYGD---DHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVN 120 (305)
T ss_pred ceEEEEEEEEEeCC---eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccc
Confidence 46999999999974 358999999999999999999999999999999999986 6899999999998643 3
Q ss_pred HHHHhhheeEEccCCCcccccHHHHHhcCCCCC--------------CHHHHHHHHHHHhHHHHHhcCccchhhhhcCCC
Q 001438 453 LKWLRQQIGLVNQEPALFATTIRENILYGKDDA--------------TMEEITRAAKLSEAMSFISNLPERFETQVGERG 518 (1077)
Q Consensus 453 ~~~~r~~i~~v~Q~~~lf~~ti~~ni~~~~~~~--------------~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g 518 (1077)
...+|++++|++|++.+|+.|++||+.++.... ...+. ...+...+.+.+ .+++++++..+.++
T Consensus 121 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~-~l~~~~~~~~~~~~ 198 (305)
T PRK14264 121 LVELRKRVGMVFQSPNPFPKSIRENISYGPRKHGDINTGLLARLLGRDDKDA-EDELVERSLRQA-ALWDEVNDRLDDNA 198 (305)
T ss_pred HHHHhhceEEEccCCccccccHHHHHHhHHhhcccccccccccccccCchHH-HHHHHHHHHHHc-CCchhhhHHhcCcc
Confidence 556788999999999999999999998763210 00010 011111222211 34445556677888
Q ss_pred CCCChHHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEccCchhHhh-cCEE-EEEECCEE
Q 001438 519 IQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRN-ADVI-AVVQGRKI 596 (1077)
Q Consensus 519 ~~LSgGqkqri~lARal~~~p~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~vtH~~~~~~~-~d~i-~~l~~G~i 596 (1077)
.+||||||||++|||||+++|+||||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+.. ||++ ++|++|++
T Consensus 199 ~~LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~~~tiiivtH~~~~i~~~~d~i~~~l~~G~i 278 (305)
T PRK14264 199 LGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAEEYTVVVVTHNMQQAARISDQTAVFLTGGEL 278 (305)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEEecCCEE
Confidence 999999999999999999999999999999999999999999999988777899999999999865 9997 57899999
Q ss_pred EEecChhHHhcC
Q 001438 597 VKTGSHEELISN 608 (1077)
Q Consensus 597 ~~~g~~~~l~~~ 608 (1077)
++.|+++++.+.
T Consensus 279 ~~~g~~~~~~~~ 290 (305)
T PRK14264 279 VEYDDTDKIFEN 290 (305)
T ss_pred EEeCCHHHHHhC
Confidence 999999998764
|
|
| >cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-39 Score=351.43 Aligned_cols=215 Identities=40% Similarity=0.573 Sum_probs=178.8
Q ss_pred EEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHHHhhhee
Q 001438 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIG 461 (1077)
Q Consensus 382 i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 461 (1077)
|+++|++++|++ +++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+. .++.++
T Consensus 1 l~~~~l~~~~~~---~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~--~~~~i~ 75 (232)
T cd03300 1 IELENVSKFYGG---FVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPP--HKRPVN 75 (232)
T ss_pred CEEEeEEEEeCC---eeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCh--hhcceE
Confidence 468999999974 359999999999999999999999999999999999999999999999999876554 256899
Q ss_pred EEccCCCcccc-cHHHHHhcCCCC--CCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHHhccC
Q 001438 462 LVNQEPALFAT-TIRENILYGKDD--ATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKN 538 (1077)
Q Consensus 462 ~v~Q~~~lf~~-ti~~ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~~~ 538 (1077)
|++|++.+|.+ |++||+.++... .+.+...+ +...+ ++.+ |++........+||||||||++||||++.+
T Consensus 76 ~~~q~~~~~~~~t~~~nl~~~~~~~~~~~~~~~~--~~~~~---l~~~--~l~~~~~~~~~~lS~G~~qrl~laral~~~ 148 (232)
T cd03300 76 TVFQNYALFPHLTVFENIAFGLRLKKLPKAEIKE--RVAEA---LDLV--QLEGYANRKPSQLSGGQQQRVAIARALVNE 148 (232)
T ss_pred EEecccccCCCCcHHHHHHHHHHhcCCCHHHHHH--HHHHH---HHHc--CCchhhcCChhhCCHHHHHHHHHHHHHhcC
Confidence 99999999976 999999865321 11211111 11111 1111 333445556679999999999999999999
Q ss_pred CCEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCeEEEEccCchhHhh-cCEEEEEECCEEEEecChhHHhcC
Q 001438 539 PSILLLDEATSALDAESENSVQEALDRVMV--GRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELISN 608 (1077)
Q Consensus 539 p~illlDEpts~lD~~~~~~i~~~l~~~~~--~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 608 (1077)
|+++||||||++||+.+.+.+.+.|+++.+ ++|+|++||+++.+.. ||++++|++|++++.|+++++...
T Consensus 149 p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~i~~l~~G~~~~~~~~~~~~~~ 221 (232)
T cd03300 149 PKVLLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQEEALTMSDRIAVMNKGKIQQIGTPEEIYEE 221 (232)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEecCCHHHHHhC
Confidence 999999999999999999999999998753 8999999999999865 999999999999999999988764
|
PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-39 Score=346.24 Aligned_cols=201 Identities=28% Similarity=0.465 Sum_probs=167.5
Q ss_pred EEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHHHhhhee
Q 001438 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIG 461 (1077)
Q Consensus 382 i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 461 (1077)
|+++|++++|++. . .|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. .++.++
T Consensus 1 i~~~~l~~~~~~~---~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~--~~~~i~ 73 (211)
T cd03298 1 VRLDKIRFSYGEQ---P--MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPP--ADRPVS 73 (211)
T ss_pred CEEEeEEEEeCCE---e--cceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCcCCH--hHccEE
Confidence 4789999999632 2 39999999999999999999999999999999999999999999999876543 356899
Q ss_pred EEccCCCcccc-cHHHHHhcCCCC-CC-----HHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHH
Q 001438 462 LVNQEPALFAT-TIRENILYGKDD-AT-----MEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRA 534 (1077)
Q Consensus 462 ~v~Q~~~lf~~-ti~~ni~~~~~~-~~-----~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARa 534 (1077)
|++|++.+|++ |++||+.++... .. .+++.++++.. |++........+||||||||++||||
T Consensus 74 ~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~~~LS~G~~qrv~ia~a 142 (211)
T cd03298 74 MLFQENNLFAHLTVEQNVGLGLSPGLKLTAEDRQAIEVALARV-----------GLAGLEKRLPGELSGGERQRVALARV 142 (211)
T ss_pred EEecccccCCCCcHHHHHhcccccccCccHHHHHHHHHHHHHc-----------CCHHHHhCCcccCCHHHHHHHHHHHH
Confidence 99999999976 999999876421 11 11122222221 23333445567899999999999999
Q ss_pred hccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh--CCCeEEEEccCchhHhh-cCEEEEEECCEEEEec
Q 001438 535 IVKNPSILLLDEATSALDAESENSVQEALDRVM--VGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTG 600 (1077)
Q Consensus 535 l~~~p~illlDEpts~lD~~~~~~i~~~l~~~~--~~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~g 600 (1077)
++.+|+++||||||++||+++++.+.+.|+++. .++|+|++||+++.+.. ||+|++|++|++++.|
T Consensus 143 l~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~ 211 (211)
T cd03298 143 LVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQPEDAKRLAQRVVFLDNGRIAAQG 211 (211)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhhhCEEEEEECCEEeecC
Confidence 999999999999999999999999999999874 38999999999999865 9999999999998764
|
Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14263 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-39 Score=354.04 Aligned_cols=220 Identities=29% Similarity=0.451 Sum_probs=183.6
Q ss_pred cEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCC-----CccEEEECCeeCCCC--CH
Q 001438 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEP-----LSGEILLDGNNIKGL--DL 453 (1077)
Q Consensus 381 ~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~-----~~G~i~~~g~~~~~~--~~ 453 (1077)
.+.+++++++|++ .++++|+||++++||+++|+|+||||||||+++|+|+++| ++|+|.++|+++... ..
T Consensus 8 ~~~~~~~~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~ 84 (261)
T PRK14263 8 VMDCKLDKIFYGN---FMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDP 84 (261)
T ss_pred eEEEEeEEEEeCC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccccccch
Confidence 5889999999963 3589999999999999999999999999999999999986 799999999998643 33
Q ss_pred HHHhhheeEEccCCCcccccHHHHHhcCCCCC--C---HHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHH
Q 001438 454 KWLRQQIGLVNQEPALFATTIRENILYGKDDA--T---MEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQR 528 (1077)
Q Consensus 454 ~~~r~~i~~v~Q~~~lf~~ti~~ni~~~~~~~--~---~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqr 528 (1077)
..+|+.++|++|++.+|+.|++||+.++.... . .+++.++++..+ +.+......++.+.+||||||||
T Consensus 85 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~-------l~~~i~~~~~~~~~~LS~G~~qr 157 (261)
T PRK14263 85 VVVRRYIGMVFQQPNPFSMSIFDNVAFGLRLNRYKGDLGDRVKHALQGAA-------LWDEVKDKLKVSGLSLSGGQQQR 157 (261)
T ss_pred HhhhhceEEEecCCccccccHHHHHHHHHhhcCchHHHHHHHHHHHHHcC-------CchhhhhhhhCCcccCCHHHHHH
Confidence 46678899999999999899999998764211 1 112222222222 22222334456778999999999
Q ss_pred HHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEccCchhHhh-cCEEEEEE--------CCEEEEe
Q 001438 529 IAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRN-ADVIAVVQ--------GRKIVKT 599 (1077)
Q Consensus 529 i~lARal~~~p~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~vtH~~~~~~~-~d~i~~l~--------~G~i~~~ 599 (1077)
++||||++++|++|||||||++||+.+...+.+.|+++.+++|+|++||+++.+.. ||+|++|+ +|++++.
T Consensus 158 v~laral~~~p~llllDEPtsgLD~~~~~~l~~~l~~~~~~~tii~isH~~~~i~~~~d~v~~l~~~~~~~~~~G~i~~~ 237 (261)
T PRK14263 158 LCIARAIATEPEVLLLDEPCSALDPIATRRVEELMVELKKDYTIALVTHNMQQAIRVADTTAFFSVDISQGTRTGYLVEM 237 (261)
T ss_pred HHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEecccccccCCceEEEe
Confidence 99999999999999999999999999999999999988778999999999998765 99999996 8999999
Q ss_pred cChhHHhcCCC
Q 001438 600 GSHEELISNPN 610 (1077)
Q Consensus 600 g~~~~l~~~~~ 610 (1077)
|+++++.+++.
T Consensus 238 g~~~~~~~~~~ 248 (261)
T PRK14263 238 GPTAQIFQNPR 248 (261)
T ss_pred CCHHHHHhCCC
Confidence 99999986543
|
|
| >PRK13547 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-39 Score=357.58 Aligned_cols=216 Identities=25% Similarity=0.382 Sum_probs=182.3
Q ss_pred EEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCC--------ccEEEECCeeCCCCCH
Q 001438 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPL--------SGEILLDGNNIKGLDL 453 (1077)
Q Consensus 382 i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~--------~G~i~~~g~~~~~~~~ 453 (1077)
++++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|+ +|+|.++|.++...+.
T Consensus 2 l~~~nl~~~~~~---~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~~~ 78 (272)
T PRK13547 2 LTADHLHVARRH---RAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAIDA 78 (272)
T ss_pred eEEEEEEEEECC---EeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccCCH
Confidence 789999999964 35899999999999999999999999999999999999998 9999999999988877
Q ss_pred HHHhhheeEEccCCC-cccccHHHHHhcCCCCC----C--HHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHH
Q 001438 454 KWLRQQIGLVNQEPA-LFATTIRENILYGKDDA----T--MEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQK 526 (1077)
Q Consensus 454 ~~~r~~i~~v~Q~~~-lf~~ti~~ni~~~~~~~----~--~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqk 526 (1077)
..+++.++|+||++. +|+.|++||+.++.... . .++..+ ...+.++.+ |+.+..+....+||||||
T Consensus 79 ~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LSgG~~ 151 (272)
T PRK13547 79 PRLARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGE-----IAWQALALA--GATALVGRDVTTLSGGEL 151 (272)
T ss_pred HHHHhhcEEecccCCCCCCCcHHHHHhhcccccccccccCCHHHHH-----HHHHHHHHc--CcHhhhcCCcccCCHHHH
Confidence 788888999999986 56789999998763111 0 011111 111222222 455667778889999999
Q ss_pred HHHHHHHHhc---------cCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCeEEEEccCchhHh-hcCEEEEEECC
Q 001438 527 QRIAISRAIV---------KNPSILLLDEATSALDAESENSVQEALDRVMV--GRTTVVVAHRLSTIR-NADVIAVVQGR 594 (1077)
Q Consensus 527 qri~lARal~---------~~p~illlDEpts~lD~~~~~~i~~~l~~~~~--~~t~i~vtH~~~~~~-~~d~i~~l~~G 594 (1077)
||++||||++ .+|++|||||||++||+.+.+.+.+.|+++.+ ++|+|+|||+++.+. .||++++|++|
T Consensus 152 qrv~laral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~~~~~~~~d~i~~l~~G 231 (272)
T PRK13547 152 ARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPNLAARHADRIAMLADG 231 (272)
T ss_pred HHHHHHHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECC
Confidence 9999999999 59999999999999999999999999998753 799999999999986 59999999999
Q ss_pred EEEEecChhHHhc
Q 001438 595 KIVKTGSHEELIS 607 (1077)
Q Consensus 595 ~i~~~g~~~~l~~ 607 (1077)
++++.|+++++..
T Consensus 232 ~i~~~g~~~~~~~ 244 (272)
T PRK13547 232 AIVAHGAPADVLT 244 (272)
T ss_pred eEEEecCHHHHcC
Confidence 9999999998864
|
|
| >PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-39 Score=357.25 Aligned_cols=231 Identities=24% Similarity=0.427 Sum_probs=182.1
Q ss_pred cEEEEeEEEEcCCC------CCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHH
Q 001438 381 HIEFKDVSFCYPSR------PDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLK 454 (1077)
Q Consensus 381 ~i~~~~v~~~y~~~------~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~ 454 (1077)
.|+++|++++|+.. .+.++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+..
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~ 83 (267)
T PRK15112 4 LLEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDYS 83 (267)
T ss_pred eEEEeceEEEecCCCCcccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCchh
Confidence 48999999999631 124699999999999999999999999999999999999999999999999998765555
Q ss_pred HHhhheeEEccCCC--cccc-cHHHHHhcCCC---CCCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHH
Q 001438 455 WLRQQIGLVNQEPA--LFAT-TIRENILYGKD---DATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQR 528 (1077)
Q Consensus 455 ~~r~~i~~v~Q~~~--lf~~-ti~~ni~~~~~---~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqr 528 (1077)
..++.++|+||++. +++. |+.+|+.++.. ....++..+ +...+.+.+ .++ .........+||||||||
T Consensus 84 ~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~--~~~~~l~~~-~l~---~~~~~~~~~~LS~G~~qr 157 (267)
T PRK15112 84 YRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQREK--QIIETLRQV-GLL---PDHASYYPHMLAPGQKQR 157 (267)
T ss_pred hHhccEEEEecCchhhcCcchhHHHHHHHHHHhccCCCHHHHHH--HHHHHHHHc-CCC---hHHHhcCchhcCHHHHHH
Confidence 56678999999985 4544 89999875321 111111111 111122222 121 111233556899999999
Q ss_pred HHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh--CCCeEEEEccCchhHhh-cCEEEEEECCEEEEecChhHH
Q 001438 529 IAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVM--VGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEEL 605 (1077)
Q Consensus 529 i~lARal~~~p~illlDEpts~lD~~~~~~i~~~l~~~~--~~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l 605 (1077)
++||||++.+|+++||||||++||+.+.+.+.+.|+++. .++|+|++||+++.+.. ||++++|++|++++.|+++++
T Consensus 158 v~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 237 (267)
T PRK15112 158 LGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLGMMKHISDQVLVMHQGEVVERGSTADV 237 (267)
T ss_pred HHHHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEecCCHHHH
Confidence 999999999999999999999999999999999999874 38899999999999976 999999999999999999999
Q ss_pred hcCCCc-hHHHHH
Q 001438 606 ISNPNS-AYAALV 617 (1077)
Q Consensus 606 ~~~~~~-~~~~~~ 617 (1077)
...+.. .+..++
T Consensus 238 ~~~~~~~~~~~~~ 250 (267)
T PRK15112 238 LASPLHELTKRLI 250 (267)
T ss_pred hcCCCCHHHHHHH
Confidence 875433 333444
|
|
| >COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-39 Score=371.41 Aligned_cols=235 Identities=32% Similarity=0.521 Sum_probs=192.2
Q ss_pred ccEEEEeEEEEcCCC--------CCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCee--CC
Q 001438 380 GHIEFKDVSFCYPSR--------PDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNN--IK 449 (1077)
Q Consensus 380 ~~i~~~~v~~~y~~~--------~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~--~~ 449 (1077)
.-++++|++++|..+ ....+++||||++++||++||||+||||||||.++|+|+.+|++|+|.++|.+ ++
T Consensus 279 ~ll~V~~l~k~y~~~~~~~~~~~~~~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~P~~G~i~~~g~~~~~~ 358 (539)
T COG1123 279 PLLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLDLT 358 (539)
T ss_pred ceeEeeeeeeeeccccccccccccceeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEEeCcccccc
Confidence 458899999999742 13468999999999999999999999999999999999999999999999987 23
Q ss_pred CCCHHHHhhheeEEccCCCc--cc-ccHHHHHhcCCCCCC-HHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHH
Q 001438 450 GLDLKWLRQQIGLVNQEPAL--FA-TTIRENILYGKDDAT-MEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQ 525 (1077)
Q Consensus 450 ~~~~~~~r~~i~~v~Q~~~l--f~-~ti~~ni~~~~~~~~-~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq 525 (1077)
.-+....|+++-+|+|||.- -+ .||+++|.-...... ........+.+.+++.+ .||.. .....+.+|||||
T Consensus 359 ~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~~~~~~~~~~~~~rv~~ll~~V-gL~~~---~l~ryP~elSGGQ 434 (539)
T COG1123 359 GGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGGGSGAERRARVAELLELV-GLPPE---FLDRYPHELSGGQ 434 (539)
T ss_pred cchhhhhhhheEEEEeCcccccCccccHHHHHHhHHhhhcccchHHHHHHHHHHHHHc-CCCHH---HHhcCchhcCcch
Confidence 22345678899999999963 33 499999975432111 11111122344444433 34422 4677889999999
Q ss_pred HHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCeEEEEccCchhHhh-cCEEEEEECCEEEEecCh
Q 001438 526 KQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMV--GRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSH 602 (1077)
Q Consensus 526 kqri~lARal~~~p~illlDEpts~lD~~~~~~i~~~l~~~~~--~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~ 602 (1077)
|||+||||||..+|+++++|||||+||+.+...+.+.|+++.+ |.|.|+|||++..+++ ||||+||++|+|+|.|+.
T Consensus 435 rQRvaIARALa~~P~lli~DEp~SaLDvsvqa~VlnLl~~lq~e~g~t~lfISHDl~vV~~i~drv~vm~~G~iVE~G~~ 514 (539)
T COG1123 435 RQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELGLTYLFISHDLAVVRYIADRVAVMYDGRIVEEGPT 514 (539)
T ss_pred hHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHhhCceEEEEECCeEEEeCCH
Confidence 9999999999999999999999999999999999999998753 7999999999999987 999999999999999999
Q ss_pred hHHhcCCCchHHHHHH
Q 001438 603 EELISNPNSAYAALVQ 618 (1077)
Q Consensus 603 ~~l~~~~~~~~~~~~~ 618 (1077)
+++.+++...|.+...
T Consensus 515 ~~v~~~p~h~Ytr~L~ 530 (539)
T COG1123 515 EKVFENPQHPYTRKLL 530 (539)
T ss_pred HHHhcCCCChHHHHHH
Confidence 9999998888887553
|
|
| >PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-39 Score=348.90 Aligned_cols=209 Identities=33% Similarity=0.488 Sum_probs=175.7
Q ss_pred EEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHHHhhhee
Q 001438 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIG 461 (1077)
Q Consensus 382 i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 461 (1077)
++++|++++|++. ..|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+.. ++.++
T Consensus 2 l~~~~l~~~~~~~-----~~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~--~~~i~ 74 (232)
T PRK10771 2 LKLTDITWLYHHL-----PMRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPPS--RRPVS 74 (232)
T ss_pred eEEEEEEEEECCc-----cceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCeecCcCChh--hccEE
Confidence 6899999999632 2389999999999999999999999999999999999999999999998765432 56799
Q ss_pred EEccCCCcccc-cHHHHHhcCCCCC---C---HHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHH
Q 001438 462 LVNQEPALFAT-TIRENILYGKDDA---T---MEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRA 534 (1077)
Q Consensus 462 ~v~Q~~~lf~~-ti~~ni~~~~~~~---~---~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARa 534 (1077)
|+||++.+|++ |++||+.++.... . .+++.++++.. |++..+......||||||||++||||
T Consensus 75 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~~~LS~G~~qrv~lara 143 (232)
T PRK10771 75 MLFQENNLFSHLTVAQNIGLGLNPGLKLNAAQREKLHAIARQM-----------GIEDLLARLPGQLSGGQRQRVALARC 143 (232)
T ss_pred EEecccccccCCcHHHHHhcccccccCCCHHHHHHHHHHHHHc-----------CcHHHHhCCcccCCHHHHHHHHHHHH
Confidence 99999999986 9999998753111 1 11122222222 33444556667899999999999999
Q ss_pred hccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh--CCCeEEEEccCchhHhh-cCEEEEEECCEEEEecChhHHhcC
Q 001438 535 IVKNPSILLLDEATSALDAESENSVQEALDRVM--VGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELISN 608 (1077)
Q Consensus 535 l~~~p~illlDEpts~lD~~~~~~i~~~l~~~~--~~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 608 (1077)
++++|+++||||||++||+.+.+.+.+.|+++. .++|+|++||+++.+.. ||++++|++|++++.|+++++...
T Consensus 144 l~~~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~g~~~~~~~~ 220 (232)
T PRK10771 144 LVREQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLEDAARIAPRSLVVADGRIAWDGPTDELLSG 220 (232)
T ss_pred HhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhC
Confidence 999999999999999999999999999998874 37899999999999865 999999999999999999998764
|
|
| >TIGR01194 cyc_pep_trnsptr cyclic peptide transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-37 Score=372.76 Aligned_cols=382 Identities=12% Similarity=0.102 Sum_probs=297.6
Q ss_pred hHHHHHhhcc-cchHHHHHHHHHHHHHhhHHhHHHHHHHHHHHhhccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001438 683 SAIKLYSMVR-PDWTYGVCGTICAIIAGAQMPLFALGVSQALVAYYMDWDTTQREVKKITILFCCAAVITVIVHAIEHLS 761 (1077)
Q Consensus 683 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 761 (1077)
..++++++++ ++++.+..++++.++.+......++.+...++.....+ . .....+.++.++..++.+.+.++
T Consensus 4 ~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~-----~--~~~~~~~~~~~~~~~~~~~~~~~ 76 (555)
T TIGR01194 4 AIGEILALLRSPFPAITAFSIALGLAGGLAIIALLASINNAIHEENFLG-----Q--GSLFSFGGLCLLALLFRIGADIF 76 (555)
T ss_pred hHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccc-----c--hHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567778888 88888888777777777666666666555543210000 0 01122344555666778888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCccccccccCCchhHHHHHhhcHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhHH
Q 001438 762 FGIMGERLTLRVREKMFSAILSNEIGWFDEMDNSSSILASRLESDATLLRTIVVDRSTILIQNFGLVTASFVIAFILNWR 841 (1077)
Q Consensus 762 ~~~~~~~~~~~Lr~~l~~~llr~p~~FFD~~~~~~G~IlnR~s~D~~~i~~~l~~~l~~~~~~~~~~~~~i~i~~~~~w~ 841 (1077)
....+.+...++|.++|+++++.|++||++ +++|++++|+++|++.+++.+.. +..++..++.+++.++++++.+|+
T Consensus 77 ~~~~~~~~~~~lR~~l~~~l~~~~~~~~~~--~~~G~l~srl~~Dv~~i~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~ 153 (555)
T TIGR01194 77 PAYAGMHIIANLRIALCEKILGAPIEEIDR--RGAHNLIPLLTHDIDQINAFLFI-FPPIAIALAIFFFCIAYLAYLSVP 153 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCHHHHHh--cCcchhhHHHhhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhHH
Confidence 999999999999999999999999999995 89999999999999999998864 777788888888899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhHHHHHHHcchHHHHHhcchH--HHHHHHHHHhhhhhHHHHHH
Q 001438 842 ITLVVVATYPLIISGHISEKLFFQGYGGNLSKAYLKANMLAAEAVSNIRTVAAFCSED--KVLELYSRELVEPSKRSFIR 919 (1077)
Q Consensus 842 l~l~~l~~~Pl~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Etl~Gi~tIrAf~~e~--~~~~~f~~~~~~~~~~~~~~ 919 (1077)
+++++++.+|+.++...+..++.++...+.++...+.+..+.|.+.|+++||+|+.++ .+.++|.+..++..+.....
T Consensus 154 L~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (555)
T TIGR01194 154 MFAITISAIIIGTAAQLLAFMGGFKFFHAARDEEDAFNEHTHAIAFGAKELKIHGIRRLSFAHGAIQESANNIADLHIIE 233 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHhcCHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 9999998888887777666666666667777788888999999999999999999954 55777887777777666555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHcC
Q 001438 920 GQIAGIFYGISQFFIFSSYGLALWYGSVLMGKELASFKSVMKSFMVLIVTALAMGETLALVPDLLKGNQMAASVFEVLDR 999 (1077)
Q Consensus 920 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~l~~ 999 (1077)
....+...++...+.....++.+++|+.. +.++++.++++..++.....|+..+......++++..+.+|+.++++.
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~t~g~l~a~~~~~~~l~~pi~~l~~~~~~~~~a~~s~~ri~~ll~~ 310 (555)
T TIGR01194 234 ILIFIAAENFGQLLFFLLIGCALFAAAMF---ASIDAAAISAFVLALLYIKGPLEMLVSALPILAQAQIACQRLADFGER 310 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 54554444555555555555566666543 678999999999999999999999999999999999999999999863
Q ss_pred CCC--ccC--CCCc-----ccccccccEEEeeeeeeCCCCC--cccccccceeeeeCCCEEEEECCCCCCHHHHHHHHhh
Q 001438 1000 KTQ--VIG--DIGE-----ELTNVEGTIELRGVHFSYPSRP--EVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILR 1068 (1077)
Q Consensus 1000 ~~~--~~~--~~~~-----~~~~~~G~I~f~nVsf~Y~~~~--~~~VLk~vsl~I~~GekVaIVGrTGsGKSTLi~lL~R 1068 (1077)
..+ ... +... +.+...++|+|+||+|+|++.+ ..++|+|+||+|++||++|||||||||||||+++|.|
T Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g 390 (555)
T TIGR01194 311 FNEPEPELELSDADNVLLLAHDKSVDSIELKDVHMNPKAPEGSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCG 390 (555)
T ss_pred hccccccccccccccccccccCCCCceEEEEEEEEEeCCCCCCcCceeccceEEEcCCcEEEEECCCCCCHHHHHHHHhC
Confidence 211 110 1000 1112347899999999997532 2358999999999999999999999999999999999
Q ss_pred ccCCCCCCC
Q 001438 1069 FYDPTAGKA 1077 (1077)
Q Consensus 1069 fyd~~~G~i 1077 (1077)
+|+|++|+|
T Consensus 391 ~~~p~~G~i 399 (555)
T TIGR01194 391 LYIPQEGEI 399 (555)
T ss_pred CCCCCCcEE
Confidence 999999975
|
This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake. |
| >PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-39 Score=353.99 Aligned_cols=215 Identities=27% Similarity=0.402 Sum_probs=178.0
Q ss_pred cEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCC---ccEEEECCeeCCCC-----C
Q 001438 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPL---SGEILLDGNNIKGL-----D 452 (1077)
Q Consensus 381 ~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~---~G~i~~~g~~~~~~-----~ 452 (1077)
.++++|+++.|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|+ +|+|.++|.++... +
T Consensus 4 ~l~~~nl~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~~ 80 (262)
T PRK09984 4 IIRVEKLAKTFNQ---HQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARD 80 (262)
T ss_pred EEEEeeEEEEeCC---eEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccchh
Confidence 5899999999964 35899999999999999999999999999999999999986 49999999988653 2
Q ss_pred HHHHhhheeEEccCCCcccc-cHHHHHhcCCCCCC----------HHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCC
Q 001438 453 LKWLRQQIGLVNQEPALFAT-TIRENILYGKDDAT----------MEEITRAAKLSEAMSFISNLPERFETQVGERGIQL 521 (1077)
Q Consensus 453 ~~~~r~~i~~v~Q~~~lf~~-ti~~ni~~~~~~~~----------~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~L 521 (1077)
...++++++|+||++.+|+. |++||+.++..... .++. ..+ ..+.++.+ |+.........+|
T Consensus 81 ~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~--~~~---~~~~l~~~--~l~~~~~~~~~~L 153 (262)
T PRK09984 81 IRKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQ--KQR---ALQALTRV--GMVHFAHQRVSTL 153 (262)
T ss_pred HHHHHhheEEEccccccccCCcHHHHHHhhhcccccchhhhcccccHHH--HHH---HHHHHHHc--CCHHHHhCCcccc
Confidence 34567889999999998875 99999987642110 0111 111 11222222 3333455677789
Q ss_pred ChHHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh--CCCeEEEEccCchhHh-hcCEEEEEECCEEEE
Q 001438 522 SGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVM--VGRTTVVVAHRLSTIR-NADVIAVVQGRKIVK 598 (1077)
Q Consensus 522 SgGqkqri~lARal~~~p~illlDEpts~lD~~~~~~i~~~l~~~~--~~~t~i~vtH~~~~~~-~~d~i~~l~~G~i~~ 598 (1077)
|||||||++||||++.+|++|||||||++||+++.+.+.+.|+++. +|+|+|++||+++.+. .||+|++|++|++++
T Consensus 154 S~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~~~~~~~d~i~~l~~g~i~~ 233 (262)
T PRK09984 154 SGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVDYALRYCERIVALRQGHVFY 233 (262)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 9999999999999999999999999999999999999999999875 3799999999999865 599999999999999
Q ss_pred ecChhHH
Q 001438 599 TGSHEEL 605 (1077)
Q Consensus 599 ~g~~~~l 605 (1077)
.|+++++
T Consensus 234 ~g~~~~~ 240 (262)
T PRK09984 234 DGSSQQF 240 (262)
T ss_pred eCCHHHh
Confidence 9999986
|
|
| >PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-37 Score=373.43 Aligned_cols=360 Identities=17% Similarity=0.206 Sum_probs=296.8
Q ss_pred hHHHHHHHHHHHhhccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccc
Q 001438 713 PLFALGVSQALVAYYMDWDTTQREVKKITILFCCAAVITVIVHAIEHLSFGIMGERLTLRVREKMFSAILSNEIGWFDEM 792 (1077)
Q Consensus 713 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~Lr~~l~~~llr~p~~FFD~~ 792 (1077)
...++.+..+++..+..... ......+..+++++.++..++.+++.++....+.+...++|.++|++++++|++||++
T Consensus 12 ~~~p~~~~~iid~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~- 89 (569)
T PRK10789 12 LIPPKVVGIIVDGVTEQHMT-TGQILMWIGTMVLIAVVVYLLRYVWRVLLFGASYQLAVELREDFYRQLSRQHPEFYLR- 89 (569)
T ss_pred HHHHHHHHHHHHHhccCCcc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHcC-
Confidence 34556666677654321111 1112233444445555666677777788888999999999999999999999999995
Q ss_pred cCCchhHHHHHhhcHHHHHHHHHhhHHHHHHHHHHHHHHHHHH-HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhH
Q 001438 793 DNSSSILASRLESDATLLRTIVVDRSTILIQNFGLVTASFVIA-FILNWRITLVVVATYPLIISGHISEKLFFQGYGGNL 871 (1077)
Q Consensus 793 ~~~~G~IlnR~s~D~~~i~~~l~~~l~~~~~~~~~~~~~i~i~-~~~~w~l~l~~l~~~Pl~i~~~~~~~~~~~~~~~~~ 871 (1077)
+++|++++|+++|++.++......+..++..++..+++++++ ++++|++++++++++|+.++......+..++..++.
T Consensus 90 -~~~g~i~srl~~Dv~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~ 168 (569)
T PRK10789 90 -HRTGDLMARATNDVDRVVFAAGEGVLTLVDSLVMGCAVLIVMSTQISWQLTLLALLPMPVMAIMIKRYGDQLHERFKLA 168 (569)
T ss_pred -CCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999888888888887766666665555 579999999999999998887777777777777777
Q ss_pred HHHHHHHhHHHHHHHcchHHHHHhcchHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 001438 872 SKAYLKANMLAAEAVSNIRTVAAFCSEDKVLELYSRELVEPSKRSFIRGQIAGIFYGISQFFIFSSYGLALWYGSVLMGK 951 (1077)
Q Consensus 872 ~~~~~~~~~~~~Etl~Gi~tIrAf~~e~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~ 951 (1077)
++...+....+.|+++|+++||+|+.|+++.++|.+..++..+...+.....+.+.+..+........+++++|+.++..
T Consensus 169 ~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~lv~~ 248 (569)
T PRK10789 169 QAAFSSLNDRTQESLTSIRMIKAFGLEDRQSALFAADAEDTGKKNMRVARIDARFDPTIYIAIGMANLLAIGGGSWMVVN 248 (569)
T ss_pred HHHHHHHHHHHHHHHcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 88888888999999999999999999999999999999988888888777777777777777777778888999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHcCCCCccCCCCcccccccccEEEeeeeeeCCCCC
Q 001438 952 ELASFKSVMKSFMVLIVTALAMGETLALVPDLLKGNQMAASVFEVLDRKTQVIGDIGEELTNVEGTIELRGVHFSYPSRP 1031 (1077)
Q Consensus 952 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~~G~I~f~nVsf~Y~~~~ 1031 (1077)
|.++++.++++..+......|+..+......++.+..+.+|+.++++.+++.... ....++.+|+|+|+||+|+|+..
T Consensus 249 g~lt~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~ll~~~~~~~~~-~~~~~~~~~~I~~~~v~~~y~~~- 326 (569)
T PRK10789 249 GSLTLGQLTSFVMYLGLMIWPMLALAWMFNIVERGSAAYSRIRAMLAEAPVVKDG-SEPVPEGRGELDVNIRQFTYPQT- 326 (569)
T ss_pred CCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCC-CCCCCCCCCcEEEEEEEEECCCC-
Confidence 9999999999999998888999999999999999999999999999876543221 11122346789999999999753
Q ss_pred cccccccceeeeeCCCEEEEECCCCCCHHHHHHHHhhccCCCCCCC
Q 001438 1032 EVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKA 1077 (1077)
Q Consensus 1032 ~~~VLk~vsl~I~~GekVaIVGrTGsGKSTLi~lL~Rfyd~~~G~i 1077 (1077)
+.++|+|+||+|+|||++|||||||||||||+++|.|+|+|++|+|
T Consensus 327 ~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p~~G~i 372 (569)
T PRK10789 327 DHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDI 372 (569)
T ss_pred CCccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEE
Confidence 3468999999999999999999999999999999999999999975
|
|
| >TIGR01978 sufC FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-39 Score=353.67 Aligned_cols=216 Identities=25% Similarity=0.356 Sum_probs=174.1
Q ss_pred EEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhccc--CCCccEEEECCeeCCCCCHHHH-hh
Q 001438 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFY--EPLSGEILLDGNNIKGLDLKWL-RQ 458 (1077)
Q Consensus 382 i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~--~~~~G~i~~~g~~~~~~~~~~~-r~ 458 (1077)
|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|++ +|++|+|.++|+++...+.... +.
T Consensus 1 l~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 77 (243)
T TIGR01978 1 LKIKDLHVSVED---KEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDERARA 77 (243)
T ss_pred CeEeeEEEEECC---EEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCCHHHhhcc
Confidence 478999999963 35899999999999999999999999999999999994 7999999999999988776554 44
Q ss_pred heeEEccCCCcccc-cHHHHHhcCCCC---------CCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCC-CCChHHHH
Q 001438 459 QIGLVNQEPALFAT-TIRENILYGKDD---------ATMEEITRAAKLSEAMSFISNLPERFETQVGERGI-QLSGGQKQ 527 (1077)
Q Consensus 459 ~i~~v~Q~~~lf~~-ti~~ni~~~~~~---------~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~-~LSgGqkq 527 (1077)
.++|++|++.+|++ |++||+.+.... .+.++..+ +.....+.+ .+++. ....... +|||||||
T Consensus 78 ~i~~v~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~-~l~~~---~~~~~~~~~LS~G~~q 151 (243)
T TIGR01978 78 GLFLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLK--LLKAKLALL-GMDEE---FLNRSVNEGFSGGEKK 151 (243)
T ss_pred ceEeeeccccccCCcCHHHHHHHHHHHhhcccccccccHHHHHH--HHHHHHHHc-CCchh---hcccccccCcCHHHHH
Confidence 59999999999886 999999764211 01111111 111122211 23221 1233333 59999999
Q ss_pred HHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCeEEEEccCchhHhh--cCEEEEEECCEEEEecChhH
Q 001438 528 RIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLSTIRN--ADVIAVVQGRKIVKTGSHEE 604 (1077)
Q Consensus 528 ri~lARal~~~p~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~vtH~~~~~~~--~d~i~~l~~G~i~~~g~~~~ 604 (1077)
|++||||++.+|+++||||||++||+.+.+.+.+.|+++. +++|+|++||+++.+.. ||++++|++|++++.|++++
T Consensus 152 rl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 231 (243)
T TIGR01978 152 RNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQRLLNYIKPDYVHVLLDGRIVKSGDVEL 231 (243)
T ss_pred HHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCcEEEEEEecHHHHHhhcCCeEEEEeCCEEEEecCHHH
Confidence 9999999999999999999999999999999999998875 47999999999999875 79999999999999999876
Q ss_pred Hh
Q 001438 605 LI 606 (1077)
Q Consensus 605 l~ 606 (1077)
+.
T Consensus 232 ~~ 233 (243)
T TIGR01978 232 AK 233 (243)
T ss_pred hc
Confidence 53
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA. |
| >TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-39 Score=369.26 Aligned_cols=216 Identities=31% Similarity=0.486 Sum_probs=178.9
Q ss_pred eEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCC----HHHHhhhee
Q 001438 386 DVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLD----LKWLRQQIG 461 (1077)
Q Consensus 386 ~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~----~~~~r~~i~ 461 (1077)
|++++|++ .. + |+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+ ....|++++
T Consensus 4 ~l~~~~~~---~~-~-~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~ 78 (354)
T TIGR02142 4 RFSKRLGD---FS-L-DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIG 78 (354)
T ss_pred EEEEEECC---EE-E-EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccCccccccchhhCCeE
Confidence 78999963 23 4 999999999999999999999999999999999999999999999986532 235677899
Q ss_pred EEccCCCcccc-cHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHHhccCCC
Q 001438 462 LVNQEPALFAT-TIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPS 540 (1077)
Q Consensus 462 ~v~Q~~~lf~~-ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~~~p~ 540 (1077)
|++|++.+|+. |++||+.++.......+.. .+. .+.++.+ |++........+||||||||++|||||+.+|+
T Consensus 79 ~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~--~~~---~~~l~~~--gL~~~~~~~~~~LSgGqkqRvalAraL~~~p~ 151 (354)
T TIGR02142 79 YVFQEARLFPHLSVRGNLRYGMKRARPSERR--ISF---ERVIELL--GIGHLLGRLPGRLSGGEKQRVAIGRALLSSPR 151 (354)
T ss_pred EEecCCccCCCCcHHHHHHHHhhccChhHHH--HHH---HHHHHHc--CChhHhcCChhhCCHHHHHHHHHHHHHHcCCC
Confidence 99999999976 9999999875322211111 111 1222222 44555667778999999999999999999999
Q ss_pred EEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCeEEEEccCchhHhh-cCEEEEEECCEEEEecChhHHhcCCCchH
Q 001438 541 ILLLDEATSALDAESENSVQEALDRVMV--GRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELISNPNSAY 613 (1077)
Q Consensus 541 illlDEpts~lD~~~~~~i~~~l~~~~~--~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~~~~~ 613 (1077)
+|||||||++||+.+++.+.+.|+++.+ ++|+|++||+++.+.. ||+|++|++|++++.|+++++..++...|
T Consensus 152 lllLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~~~~~ 227 (354)
T TIGR02142 152 LLLMDEPLAALDDPRKYEILPYLERLHAEFGIPILYVSHSLQEVLRLADRVVVLEDGRVAAAGPIAEVWASPDLPW 227 (354)
T ss_pred EEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCEEEEECCHHHHhcCcCccc
Confidence 9999999999999999999999998753 7999999999999865 99999999999999999999987654443
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter. |
| >cd03299 ABC_ModC_like Archeal protein closely related to ModC | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-39 Score=348.66 Aligned_cols=215 Identities=34% Similarity=0.562 Sum_probs=178.4
Q ss_pred EEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHHHhhhee
Q 001438 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIG 461 (1077)
Q Consensus 382 i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 461 (1077)
|+++|++++|++ ++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|.++...+. .++.++
T Consensus 1 l~~~~l~~~~~~----~~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~~G~v~i~g~~~~~~~~--~~~~i~ 74 (235)
T cd03299 1 LKVENLSKDWKE----FKLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPP--EKRDIS 74 (235)
T ss_pred CeeEeEEEEeCC----ceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcCcCCh--hHcCEE
Confidence 468999999963 27999999999999999999999999999999999999999999999999876554 367899
Q ss_pred EEccCCCccc-ccHHHHHhcCCCC--CCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHHhccC
Q 001438 462 LVNQEPALFA-TTIRENILYGKDD--ATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKN 538 (1077)
Q Consensus 462 ~v~Q~~~lf~-~ti~~ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~~~ 538 (1077)
|++|++.+|+ .|++||+.++... .+..+..+ +...+.+ .+ |+...+.....+||||||||++||||++.+
T Consensus 75 ~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~--~~~~~l~---~~--~l~~~~~~~~~~LS~G~~qrl~laral~~~ 147 (235)
T cd03299 75 YVPQNYALFPHMTVYKNIAYGLKKRKVDKKEIER--KVLEIAE---ML--GIDHLLNRKPETLSGGEQQRVAIARALVVN 147 (235)
T ss_pred EEeecCccCCCccHHHHHHHHHHHcCCCHHHHHH--HHHHHHH---Hc--CChhHHhcCcccCCHHHHHHHHHHHHHHcC
Confidence 9999999986 5999999875321 11221111 1111222 11 233334556678999999999999999999
Q ss_pred CCEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCeEEEEccCchhHhh-cCEEEEEECCEEEEecChhHHhcCC
Q 001438 539 PSILLLDEATSALDAESENSVQEALDRVMV--GRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELISNP 609 (1077)
Q Consensus 539 p~illlDEpts~lD~~~~~~i~~~l~~~~~--~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~ 609 (1077)
|++++|||||++||+.+.+.+.+.|+++.+ ++|+|++||+++.+.. ||+|++|++|++++.|+++++.+.+
T Consensus 148 p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~~~tili~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~ 221 (235)
T cd03299 148 PKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDFEEAWALADKVAIMLNGKLIQVGKPEEVFKKP 221 (235)
T ss_pred CCEEEECCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHHhCc
Confidence 999999999999999999999999988643 8999999999999875 9999999999999999999887653
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-40 Score=312.25 Aligned_cols=221 Identities=33% Similarity=0.533 Sum_probs=186.6
Q ss_pred cEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCC---------
Q 001438 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGL--------- 451 (1077)
Q Consensus 381 ~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~--------- 451 (1077)
.++++|+.++|+.. .+|++||++-++|+.+.|+|.|||||||+++||.=+-.|+.|+|.++|..|+-.
T Consensus 6 ~l~v~dlHK~~G~~---eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~P~~G~I~v~geei~~k~~~~G~l~~ 82 (256)
T COG4598 6 ALEVEDLHKRYGEH---EVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKDGQLKP 82 (256)
T ss_pred ceehhHHHhhcccc---hhhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcCCCCceEEECCeEEEeeeCCCCCeee
Confidence 58899999999754 499999999999999999999999999999999999999999999999987532
Q ss_pred -C---HHHHhhheeEEccCCCcccc-cHHHHHhcCCC----CCCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCC
Q 001438 452 -D---LKWLRQQIGLVNQEPALFAT-TIRENILYGKD----DATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLS 522 (1077)
Q Consensus 452 -~---~~~~r~~i~~v~Q~~~lf~~-ti~~ni~~~~~----~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LS 522 (1077)
+ ...+|.+.++|+|+..|.+- |+.||+.-..- ..+.+.+.+|.+. +.+ -|++......+..||
T Consensus 83 ad~~q~~r~Rs~L~mVFQ~FNLWsHmtvLeNViEaPvhVLg~~k~ea~e~Ae~~------L~k--VGi~ek~~~YP~~LS 154 (256)
T COG4598 83 ADKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVLGVSKAEAIERAEKY------LAK--VGIAEKADAYPAHLS 154 (256)
T ss_pred CCHHHHHHHHHHhhHhhhhcchhHHHHHHHHHHhcchHhhcCCHHHHHHHHHHH------HHH--hCchhhhhcCccccC
Confidence 1 34578899999999999975 99999874321 1122333333222 221 145555556788999
Q ss_pred hHHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCeEEEEccCchhHhh-cCEEEEEECCEEEEec
Q 001438 523 GGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTG 600 (1077)
Q Consensus 523 gGqkqri~lARal~~~p~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~g 600 (1077)
|||+||++|||||..+|+++++|||||||||+---++++.++++. .|+|.++|||.+.+.++ +.+++.|++|+|-|+|
T Consensus 155 GGQQQR~aIARaLameP~vmLFDEPTSALDPElVgEVLkv~~~LAeEgrTMv~VTHEM~FAR~Vss~v~fLh~G~iEE~G 234 (256)
T COG4598 155 GGQQQRVAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEEGRTMVVVTHEMGFARDVSSHVIFLHQGKIEEEG 234 (256)
T ss_pred chHHHHHHHHHHHhcCCceEeecCCcccCCHHHHHHHHHHHHHHHHhCCeEEEEeeehhHHHhhhhheEEeecceecccC
Confidence 999999999999999999999999999999999999999998874 69999999999999988 8999999999999999
Q ss_pred ChhHHhcCCCch
Q 001438 601 SHEELISNPNSA 612 (1077)
Q Consensus 601 ~~~~l~~~~~~~ 612 (1077)
+|+++..+|.+.
T Consensus 235 ~P~qvf~nP~S~ 246 (256)
T COG4598 235 PPEQVFGNPQSP 246 (256)
T ss_pred ChHHHhcCCCCH
Confidence 999999887644
|
|
| >TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-36 Score=372.13 Aligned_cols=388 Identities=23% Similarity=0.354 Sum_probs=319.6
Q ss_pred HHHhhcccchHHHHHHHHHHHHHhhHHhHHHHHHHHHHHhhccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001438 686 KLYSMVRPDWTYGVCGTICAIIAGAQMPLFALGVSQALVAYYMDWDTTQREVKKITILFCCAAVITVIVHAIEHLSFGIM 765 (1077)
Q Consensus 686 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 765 (1077)
.++++.+++++++...+++.++.+......++.+..+++..+...+ ......+..+++++.++..++.+.+.+.....
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iid~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (576)
T TIGR02204 8 ALWPFVRPYRGRVLAALVALLITAAATLSLPYAVRLMIDHGFSKDS--SGLLNRYFAFLLVVALVLALGTAARFYLVTWL 85 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhccccc--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555666666667777777777777778888888776443211 11222233344455555666777888899999
Q ss_pred HHHHHHHHHHHHHHHHHcCCccccccccCCchhHHHHHhhcHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 001438 766 GERLTLRVREKMFSAILSNEIGWFDEMDNSSSILASRLESDATLLRTIVVDRSTILIQNFGLVTASFVIAFILNWRITLV 845 (1077)
Q Consensus 766 ~~~~~~~Lr~~l~~~llr~p~~FFD~~~~~~G~IlnR~s~D~~~i~~~l~~~l~~~~~~~~~~~~~i~i~~~~~w~l~l~ 845 (1077)
+.++...+|..+|+++++.|.++|+. .++|++++|+++|++.+++.+...+..++..++.+++.++++++++|.++++
T Consensus 86 ~~~~~~~lr~~l~~~l~~~~~~~~~~--~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 163 (576)
T TIGR02204 86 GERVVADIRRAVFAHLISLSPSFFDK--NRSGEVVSRLTTDTTLLQSVIGSSLSMALRNALMCIGGLIMMFITSPKLTSL 163 (576)
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHcc--CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 99999999999999999999999995 8899999999999999999999989898999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhHHHHHHHcchHHHHHhcchHHHHHHHHHHhhhhhHHHHHHHHHHHH
Q 001438 846 VVATYPLIISGHISEKLFFQGYGGNLSKAYLKANMLAAEAVSNIRTVAAFCSEDKVLELYSRELVEPSKRSFIRGQIAGI 925 (1077)
Q Consensus 846 ~l~~~Pl~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Etl~Gi~tIrAf~~e~~~~~~f~~~~~~~~~~~~~~~~~~~~ 925 (1077)
+++.+|+.++...+..+..++..++.++...+..+.+.|.++|+++||+|+.|+++.++|.+..++..+...+......+
T Consensus 164 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (576)
T TIGR02204 164 VLLAVPLVLLPILLFGRRVRKLSRESQDRIADAGSYAGETLGAIRTVQAFGHEDAERSRFGGAVEKAYEAARQRIRTRAL 243 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99988988877777777777777788888888888999999999999999999999999999999888777776666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHcCCCCccC
Q 001438 926 FYGISQFFIFSSYGLALWYGSVLMGKELASFKSVMKSFMVLIVTALAMGETLALVPDLLKGNQMAASVFEVLDRKTQVIG 1005 (1077)
Q Consensus 926 ~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~l~~~~~~~~ 1005 (1077)
...+...+......+.+++|+.++..|.++++.++++..+......++..+......+..+..+.+|+.++++.+++.+.
T Consensus 244 ~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~ri~~~l~~~~~~~~ 323 (576)
T TIGR02204 244 LTAIVIVLVFGAIVGVLWVGAHDVIAGKMSAGTLGQFVFYAVMVAGSIGTLSEVWGELQRAAGAAERLIELLQAEPDIKA 323 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCC
Confidence 66666666667777888899999999999999999998888888999999999999999999999999999987655332
Q ss_pred CC-Cc-ccccccccEEEeeeeeeCCCCCcccccccceeeeeCCCEEEEECCCCCCHHHHHHHHhhccCCCCCCC
Q 001438 1006 DI-GE-ELTNVEGTIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKA 1077 (1077)
Q Consensus 1006 ~~-~~-~~~~~~G~I~f~nVsf~Y~~~~~~~VLk~vsl~I~~GekVaIVGrTGsGKSTLi~lL~Rfyd~~~G~i 1077 (1077)
.. .. ..++..+.|+|+||+|+||++.+.++|+|+||+|+|||++||||+||||||||+++|.|+|+|++|+|
T Consensus 324 ~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~~G~I 397 (576)
T TIGR02204 324 PAHPKTLPVPLRGEIEFEQVNFAYPARPDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRI 397 (576)
T ss_pred CCCCccCCcCCCceEEEEEEEEECCCCCCCccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEE
Confidence 11 11 11233578999999999986543568999999999999999999999999999999999999999975
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. |
| >PRK11248 tauB taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-39 Score=353.18 Aligned_cols=206 Identities=26% Similarity=0.446 Sum_probs=170.6
Q ss_pred EEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHHHhhhee
Q 001438 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIG 461 (1077)
Q Consensus 382 i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 461 (1077)
++++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++... +..++
T Consensus 2 l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~-----~~~~~ 73 (255)
T PRK11248 2 LQISHLYADYGG---KPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGP-----GAERG 73 (255)
T ss_pred EEEEEEEEEeCC---eeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCC-----CCcEE
Confidence 789999999964 3589999999999999999999999999999999999999999999999988642 23599
Q ss_pred EEccCCCccc-ccHHHHHhcCCC--CCCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHHhccC
Q 001438 462 LVNQEPALFA-TTIRENILYGKD--DATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKN 538 (1077)
Q Consensus 462 ~v~Q~~~lf~-~ti~~ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~~~ 538 (1077)
|++|++.+|+ .|++||+.++.. ....++..+ + ..+.++.+ |++......+.+||||||||++||||++.+
T Consensus 74 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~--~---~~~~l~~~--gl~~~~~~~~~~LSgGq~qrl~laral~~~ 146 (255)
T PRK11248 74 VVFQNEGLLPWRNVQDNVAFGLQLAGVEKMQRLE--I---AHQMLKKV--GLEGAEKRYIWQLSGGQRQRVGIARALAAN 146 (255)
T ss_pred EEeCCCccCCCCcHHHHHHhHHHHcCCCHHHHHH--H---HHHHHHHc--CChhHhhCChhhCCHHHHHHHHHHHHHhcC
Confidence 9999999887 499999987532 111111111 1 11222222 333444566789999999999999999999
Q ss_pred CCEEEEeCcCCCCCHHHHHHHHHHHHHHh--CCCeEEEEccCchhHhh-cCEEEEEE--CCEEEEecCh
Q 001438 539 PSILLLDEATSALDAESENSVQEALDRVM--VGRTTVVVAHRLSTIRN-ADVIAVVQ--GRKIVKTGSH 602 (1077)
Q Consensus 539 p~illlDEpts~lD~~~~~~i~~~l~~~~--~~~t~i~vtH~~~~~~~-~d~i~~l~--~G~i~~~g~~ 602 (1077)
|++|||||||++||+.+.+.+.+.|+++. .|+|+|++||+++.+.. ||+|++|+ +|++++.++.
T Consensus 147 p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~~~G~i~~~~~~ 215 (255)
T PRK11248 147 PQLLLLDEPFGALDAFTREQMQTLLLKLWQETGKQVLLITHDIEEAVFMATELVLLSPGPGRVVERLPL 215 (255)
T ss_pred CCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCcEEEEEecC
Confidence 99999999999999999999999998863 48999999999999865 99999999 5999998765
|
|
| >cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-39 Score=349.37 Aligned_cols=211 Identities=26% Similarity=0.448 Sum_probs=170.6
Q ss_pred EEEEeEEEEcCCCC-CcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccC---CCccEEEECCeeCCCCCHHHHh
Q 001438 382 IEFKDVSFCYPSRP-DVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYE---PLSGEILLDGNNIKGLDLKWLR 457 (1077)
Q Consensus 382 i~~~~v~~~y~~~~-~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~---~~~G~i~~~g~~~~~~~~~~~r 457 (1077)
++++||+++|++.. .+++++|+||++++||+++|+||||||||||+++|+|+++ |++|+|.++|+++. ...+|
T Consensus 4 ~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~---~~~~~ 80 (226)
T cd03234 4 LPWWDVGLKAKNWNKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRK---PDQFQ 80 (226)
T ss_pred ceeecceeeeecCccccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECC---hHHhc
Confidence 57999999997542 3579999999999999999999999999999999999999 99999999999875 34577
Q ss_pred hheeEEccCCCcccc-cHHHHHhcCCCC----CCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHH
Q 001438 458 QQIGLVNQEPALFAT-TIRENILYGKDD----ATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAIS 532 (1077)
Q Consensus 458 ~~i~~v~Q~~~lf~~-ti~~ni~~~~~~----~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lA 532 (1077)
++++|++|++.+|++ |++||+.++... ...++.... .... ..++.+ ++.........+||||||||++||
T Consensus 81 ~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~-~~~~--~~l~~~--~l~~~~~~~~~~LS~G~~qrl~la 155 (226)
T cd03234 81 KCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKK-RVED--VLLRDL--ALTRIGGNLVKGISGGERRRVSIA 155 (226)
T ss_pred ccEEEeCCCCccCcCCcHHHHHHHHHHhhcccccchHHHHH-HHHH--HHHHhh--cchhhhcccccCcCHHHHHHHHHH
Confidence 889999999999987 999999875311 111111100 1111 012111 233334456779999999999999
Q ss_pred HHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCeEEEEccCc-hhH-hhcCEEEEEECCEEEEec
Q 001438 533 RAIVKNPSILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRL-STI-RNADVIAVVQGRKIVKTG 600 (1077)
Q Consensus 533 Ral~~~p~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~vtH~~-~~~-~~~d~i~~l~~G~i~~~g 600 (1077)
||++.+|+++||||||++||+.+.+.+.+.|++.. +++|+|++||++ +.+ +.||++++|++|++++.|
T Consensus 156 ral~~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~g 226 (226)
T cd03234 156 VQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRIVILTIHQPRSDLFRLFDRILLLSSGEIVYSG 226 (226)
T ss_pred HHHHhCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHhCCEEEEEeCCEEEecC
Confidence 99999999999999999999999999999998874 578999999998 455 569999999999999865
|
The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in |
| >PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-39 Score=354.35 Aligned_cols=227 Identities=26% Similarity=0.410 Sum_probs=184.1
Q ss_pred cEEEEeEEEEcCCC------CCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCH-
Q 001438 381 HIEFKDVSFCYPSR------PDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDL- 453 (1077)
Q Consensus 381 ~i~~~~v~~~y~~~------~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~- 453 (1077)
.|+++|+++.|+.. .++++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++..++.
T Consensus 3 ~l~~~nl~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~sG~i~~~g~~~~~~~~~ 82 (268)
T PRK10419 3 LLNVSGLSHHYAHGGLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNRA 82 (268)
T ss_pred eEEEeceEEEecCCccccccCceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccChh
Confidence 38899999999731 12469999999999999999999999999999999999999999999999999887665
Q ss_pred --HHHhhheeEEccCCC--ccc-ccHHHHHhcCCC---CCCHHHHHHHHHHHhHHHHHhcCccchhh-hhcCCCCCCChH
Q 001438 454 --KWLRQQIGLVNQEPA--LFA-TTIRENILYGKD---DATMEEITRAAKLSEAMSFISNLPERFET-QVGERGIQLSGG 524 (1077)
Q Consensus 454 --~~~r~~i~~v~Q~~~--lf~-~ti~~ni~~~~~---~~~~~~~~~~~~~~~~~~~i~~l~~g~~t-~~~~~g~~LSgG 524 (1077)
..+|+.++|++|++. +++ .|++||+.+... .....+.. ....+.++.+ |+++ ..+..+.+||||
T Consensus 83 ~~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~-----~~~~~~l~~~--gl~~~~~~~~~~~LS~G 155 (268)
T PRK10419 83 QRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHLLSLDKAERL-----ARASEMLRAV--DLDDSVLDKRPPQLSGG 155 (268)
T ss_pred HHHHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHhhccCCHHHHH-----HHHHHHHHHc--CCChhHhhCCCccCChH
Confidence 346788999999984 443 599999865321 11111111 1112223322 4542 456678899999
Q ss_pred HHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCeEEEEccCchhHhh-cCEEEEEECCEEEEecC
Q 001438 525 QKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMV--GRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGS 601 (1077)
Q Consensus 525 qkqri~lARal~~~p~illlDEpts~lD~~~~~~i~~~l~~~~~--~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~g~ 601 (1077)
||||++||||++.+|++|||||||++||+.+.+.+.+.|+++.+ ++|+|++||+++.+.. ||++++|++|++++.|+
T Consensus 156 e~qrl~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~~g~ 235 (268)
T PRK10419 156 QLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLRLVERFCQRVMVMDNGQIVETQP 235 (268)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEECCHHHHHHhCCEEEEEECCEEeeeCC
Confidence 99999999999999999999999999999999999999988753 7899999999999975 99999999999999999
Q ss_pred hhHHhcCCCchHHH
Q 001438 602 HEELISNPNSAYAA 615 (1077)
Q Consensus 602 ~~~l~~~~~~~~~~ 615 (1077)
++++... .+.|..
T Consensus 236 ~~~~~~~-~~~~~~ 248 (268)
T PRK10419 236 VGDKLTF-SSPAGR 248 (268)
T ss_pred hhhccCC-CCHHHH
Confidence 9998764 454443
|
|
| >TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-39 Score=342.18 Aligned_cols=202 Identities=36% Similarity=0.520 Sum_probs=168.7
Q ss_pred EEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHHHhhhee
Q 001438 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIG 461 (1077)
Q Consensus 382 i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 461 (1077)
++++|++++|+. .++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+ .+++.++
T Consensus 1 ~~~~~l~~~~~~-----~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~--~~~~~i~ 73 (213)
T TIGR01277 1 LALDKVRYEYEH-----LPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLA--PYQRPVS 73 (213)
T ss_pred CeEEeeeEEeCC-----cceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccCC--hhccceE
Confidence 368999999962 467999999999999999999999999999999999999999999999987543 3567899
Q ss_pred EEccCCCcccc-cHHHHHhcCC-CCC--C---HHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHH
Q 001438 462 LVNQEPALFAT-TIRENILYGK-DDA--T---MEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRA 534 (1077)
Q Consensus 462 ~v~Q~~~lf~~-ti~~ni~~~~-~~~--~---~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARa 534 (1077)
|++|+|.+|.. |++||+.++. +.. . .+++.++++.. |+.........+||||||||++||||
T Consensus 74 ~v~q~~~~~~~~t~~en~~~~~~~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~~~LS~G~~qrl~lara 142 (213)
T TIGR01277 74 MLFQENNLFAHLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQQV-----------GIADYLDRLPEQLSGGQRQRVALARC 142 (213)
T ss_pred EEeccCccCCCCcHHHHHHhHhhccCCccHHHHHHHHHHHHHc-----------CcHHHhhCCcccCCHHHHHHHHHHHH
Confidence 99999999875 9999998653 111 1 11122222222 23333455567899999999999999
Q ss_pred hccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh--CCCeEEEEccCchhHhh-cCEEEEEECCEEEEecC
Q 001438 535 IVKNPSILLLDEATSALDAESENSVQEALDRVM--VGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGS 601 (1077)
Q Consensus 535 l~~~p~illlDEpts~lD~~~~~~i~~~l~~~~--~~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~g~ 601 (1077)
++.+|+++||||||++||+.+.+.+.+.|+++. .++|+|++||+++.+.. ||++++|++|++++.|.
T Consensus 143 l~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~tii~vsh~~~~~~~~~d~v~~l~~g~i~~~~~ 212 (213)
T TIGR01277 143 LVRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHLSDARAIASQIAVVSQGKIKVVSD 212 (213)
T ss_pred HhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCeEEEEECCeEEEecC
Confidence 999999999999999999999999999999875 37899999999998865 99999999999999875
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found. |
| >cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-39 Score=330.49 Aligned_cols=171 Identities=56% Similarity=0.886 Sum_probs=160.3
Q ss_pred EEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHHHhhhee
Q 001438 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIG 461 (1077)
Q Consensus 382 i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 461 (1077)
++++|++++|++. ..++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+...+|++++
T Consensus 1 l~~~~l~~~~~~~-~~~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (171)
T cd03228 1 IEFKNVSFSYPGR-PKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDLESLRKNIA 79 (171)
T ss_pred CEEEEEEEEcCCC-CcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhhhcCHHHHHhhEE
Confidence 4789999999753 135899999999999999999999999999999999999999999999999998887778888999
Q ss_pred EEccCCCcccccHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHHhccCCCE
Q 001438 462 LVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSI 541 (1077)
Q Consensus 462 ~v~Q~~~lf~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~~~p~i 541 (1077)
|++|++.+|+.|++||+ ||||||||++||||++.+|++
T Consensus 80 ~~~~~~~~~~~t~~e~l------------------------------------------LS~G~~~rl~la~al~~~p~l 117 (171)
T cd03228 80 YVPQDPFLFSGTIRENI------------------------------------------LSGGQRQRIAIARALLRDPPI 117 (171)
T ss_pred EEcCCchhccchHHHHh------------------------------------------hCHHHHHHHHHHHHHhcCCCE
Confidence 99999999999999997 999999999999999999999
Q ss_pred EEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEccCchhHhhcCEEEEEECCE
Q 001438 542 LLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRNADVIAVVQGRK 595 (1077)
Q Consensus 542 lllDEpts~lD~~~~~~i~~~l~~~~~~~t~i~vtH~~~~~~~~d~i~~l~~G~ 595 (1077)
+||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+..||++++|++|+
T Consensus 118 lllDEP~~gLD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~~~~l~~g~ 171 (171)
T cd03228 118 LILDEATSALDPETEALILEALRALAKGKTVIVIAHRLSTIRDADRIIVLDDGR 171 (171)
T ss_pred EEEECCCcCCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHhCCEEEEEcCCC
Confidence 999999999999999999999998877899999999999998899999999985
|
They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-40 Score=309.22 Aligned_cols=194 Identities=31% Similarity=0.532 Sum_probs=168.1
Q ss_pred CcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHHHhhheeEEccCCCcccccHH
Q 001438 396 DVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIGLVNQEPALFATTIR 475 (1077)
Q Consensus 396 ~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~ 475 (1077)
+.++|+|+||++.+||+++|.||||||||||++.++-+.+|++|++++.|++++.++++.+|++|+||.|.|.||.+||.
T Consensus 15 ~a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lisp~~G~l~f~Ge~vs~~~pea~Rq~VsY~~Q~paLfg~tVe 94 (223)
T COG4619 15 DAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEAYRQQVSYCAQTPALFGDTVE 94 (223)
T ss_pred CCeeecceeeeecCCceEEEeCCCCccHHHHHHHHHhccCCCCceEEEcCccccccChHHHHHHHHHHHcCccccccchh
Confidence 45699999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCC---CCCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHHhccCCCEEEEeCcCCCCC
Q 001438 476 ENILYGKD---DATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALD 552 (1077)
Q Consensus 476 ~ni~~~~~---~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~~~p~illlDEpts~lD 552 (1077)
||+.|... ...+. ..+ .+++.... -.++.+..+..+||||+|||++|+|-|---|+||+|||||||||
T Consensus 95 DNlifP~~~r~rr~dr--~aa------~~llar~~-l~~~~L~k~it~lSGGE~QriAliR~Lq~~P~ILLLDE~TsALD 165 (223)
T COG4619 95 DNLIFPWQIRNRRPDR--AAA------LDLLARFA-LPDSILTKNITELSGGEKQRIALIRNLQFMPKILLLDEITSALD 165 (223)
T ss_pred hccccchHHhccCCCh--HHH------HHHHHHcC-CchhhhcchhhhccchHHHHHHHHHHhhcCCceEEecCchhhcC
Confidence 99998741 11111 111 12222221 13456777888999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHh--CCCeEEEEccCchh-HhhcCEEEEEECCEEEE
Q 001438 553 AESENSVQEALDRVM--VGRTTVVVAHRLST-IRNADVIAVVQGRKIVK 598 (1077)
Q Consensus 553 ~~~~~~i~~~l~~~~--~~~t~i~vtH~~~~-~~~~d~i~~l~~G~i~~ 598 (1077)
+.+.+.|.+.|.++. ++..++.|||+-.. ++.+||++-+..|++-+
T Consensus 166 ~~nkr~ie~mi~~~v~~q~vAv~WiTHd~dqa~rha~k~itl~~G~~~~ 214 (223)
T COG4619 166 ESNKRNIEEMIHRYVREQNVAVLWITHDKDQAIRHADKVITLQPGHAGE 214 (223)
T ss_pred hhhHHHHHHHHHHHhhhhceEEEEEecChHHHhhhhheEEEeccCcccc
Confidence 999999999998874 57899999999987 78899999999998643
|
|
| >cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-39 Score=338.77 Aligned_cols=191 Identities=25% Similarity=0.363 Sum_probs=163.4
Q ss_pred cEEEEeEEEEcCCC-CCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccC---CCccEEEECCeeCCCCCHHHH
Q 001438 381 HIEFKDVSFCYPSR-PDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYE---PLSGEILLDGNNIKGLDLKWL 456 (1077)
Q Consensus 381 ~i~~~~v~~~y~~~-~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~---~~~G~i~~~g~~~~~~~~~~~ 456 (1077)
.+.++|++|.|+.. .+.++|+|+||++++||+++|+||||||||||+++|+|+++ |++|+|.++|+++...+ ...
T Consensus 3 ~~~~~~~~~~~~~~~~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~-~~~ 81 (202)
T cd03233 3 TLSWRNISFTTGKGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFA-EKY 81 (202)
T ss_pred eEEEEccEEEeccCCCCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccch-hhh
Confidence 36899999999854 34579999999999999999999999999999999999999 89999999999987654 356
Q ss_pred hhheeEEccCCCcccc-cHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHHh
Q 001438 457 RQQIGLVNQEPALFAT-TIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAI 535 (1077)
Q Consensus 457 r~~i~~v~Q~~~lf~~-ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal 535 (1077)
+++++|++|++.+|+. |++||+.++... . ..+....||||||||++||||+
T Consensus 82 ~~~i~~~~q~~~~~~~~tv~~~l~~~~~~----------~------------------~~~~~~~LS~Ge~qrl~laral 133 (202)
T cd03233 82 PGEIIYVSEEDVHFPTLTVRETLDFALRC----------K------------------GNEFVRGISGGERKRVSIAEAL 133 (202)
T ss_pred cceEEEEecccccCCCCcHHHHHhhhhhh----------c------------------cccchhhCCHHHHHHHHHHHHH
Confidence 7789999999988875 999999765210 0 1234568999999999999999
Q ss_pred ccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCeEEEEcc-CchhHh-hcCEEEEEECCEEEEec
Q 001438 536 VKNPSILLLDEATSALDAESENSVQEALDRVMV--GRTTVVVAH-RLSTIR-NADVIAVVQGRKIVKTG 600 (1077)
Q Consensus 536 ~~~p~illlDEpts~lD~~~~~~i~~~l~~~~~--~~t~i~vtH-~~~~~~-~~d~i~~l~~G~i~~~g 600 (1077)
+.+|+++||||||++||+++++.+.+.|+++.+ +.|+|+++| +.+.+. .||++++|++|++++.|
T Consensus 134 ~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h~~~~~~~~~d~i~~l~~G~i~~~g 202 (202)
T cd03233 134 VSRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQASDEIYDLFDKVLVLYEGRQIYYG 202 (202)
T ss_pred hhCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHhCCeEEEEECCEEEecC
Confidence 999999999999999999999999999998753 567676655 456664 59999999999998764
|
PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-39 Score=330.66 Aligned_cols=170 Identities=36% Similarity=0.617 Sum_probs=157.0
Q ss_pred EEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHHHhhhee
Q 001438 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIG 461 (1077)
Q Consensus 382 i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 461 (1077)
++++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+ ..+|+.++
T Consensus 1 l~~~~l~~~~~~---~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~-~~~~~~i~ 76 (173)
T cd03230 1 IEVRNLSKRYGK---KTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEP-EEVKRRIG 76 (173)
T ss_pred CEEEEEEEEECC---eeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccch-HhhhccEE
Confidence 468999999964 25899999999999999999999999999999999999999999999999987665 56778899
Q ss_pred EEccCCCcccc-cHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHHhccCCC
Q 001438 462 LVNQEPALFAT-TIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPS 540 (1077)
Q Consensus 462 ~v~Q~~~lf~~-ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~~~p~ 540 (1077)
|++|++.+|++ |++||+. ||||||||++||||++.+|+
T Consensus 77 ~~~q~~~~~~~~tv~~~~~-----------------------------------------LS~G~~qrv~laral~~~p~ 115 (173)
T cd03230 77 YLPEEPSLYENLTVRENLK-----------------------------------------LSGGMKQRLALAQALLHDPE 115 (173)
T ss_pred EEecCCccccCCcHHHHhh-----------------------------------------cCHHHHHHHHHHHHHHcCCC
Confidence 99999999886 9999974 99999999999999999999
Q ss_pred EEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCeEEEEccCchhHh-hcCEEEEEECCEE
Q 001438 541 ILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLSTIR-NADVIAVVQGRKI 596 (1077)
Q Consensus 541 illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~vtH~~~~~~-~~d~i~~l~~G~i 596 (1077)
++||||||++||+.+.+.+.+.|+++. +|.|+|++||+.+.+. .||++++|++|++
T Consensus 116 illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~~~~~~~d~i~~l~~g~i 173 (173)
T cd03230 116 LLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILEEAERLCDRVAILNNGRI 173 (173)
T ss_pred EEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhCCEEEEEeCCCC
Confidence 999999999999999999999999874 4789999999999887 5999999999974
|
In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11147 ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-38 Score=384.97 Aligned_cols=206 Identities=25% Similarity=0.391 Sum_probs=156.1
Q ss_pred cEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHHHhhhe
Q 001438 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQI 460 (1077)
Q Consensus 381 ~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i 460 (1077)
.|+++|++++|++ .++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.. .+
T Consensus 3 ~l~i~~ls~~~~~---~~il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~p~~G~I~~~~~~-----------~~ 68 (635)
T PRK11147 3 LISIHGAWLSFSD---APLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLDDGRIIYEQDL-----------IV 68 (635)
T ss_pred EEEEeeEEEEeCC---ceeEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEeCCCC-----------EE
Confidence 3889999999964 359999999999999999999999999999999999999999999998731 37
Q ss_pred eEEccCCCc-ccccHHHHHhcCCCC------------------CCHHHHHHHHH-------------HHhHHHHHhcCcc
Q 001438 461 GLVNQEPAL-FATTIRENILYGKDD------------------ATMEEITRAAK-------------LSEAMSFISNLPE 508 (1077)
Q Consensus 461 ~~v~Q~~~l-f~~ti~~ni~~~~~~------------------~~~~~~~~~~~-------------~~~~~~~i~~l~~ 508 (1077)
+|++|++.. ..+++.+++..+... ...+.+..... .....+.++.+
T Consensus 69 ~~l~q~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l-- 146 (635)
T PRK11147 69 ARLQQDPPRNVEGTVYDFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLDHHNLWQLENRINEVLAQL-- 146 (635)
T ss_pred EEeccCCCCCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhC--
Confidence 888887643 235666665322100 00000000000 00111122222
Q ss_pred chhhhhcCCCCCCChHHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEccCchhHhh-cCE
Q 001438 509 RFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRN-ADV 587 (1077)
Q Consensus 509 g~~t~~~~~g~~LSgGqkqri~lARal~~~p~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~vtH~~~~~~~-~d~ 587 (1077)
|+. ......+||||||||++|||||+.+|+||||||||++||+++...+.+.|+++ +.|+|+|||+...+.. ||+
T Consensus 147 gl~--~~~~~~~LSgGekqRv~LAraL~~~P~lLLLDEPt~~LD~~~~~~L~~~L~~~--~~tvlivsHd~~~l~~~~d~ 222 (635)
T PRK11147 147 GLD--PDAALSSLSGGWLRKAALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFLKTF--QGSIIFISHDRSFIRNMATR 222 (635)
T ss_pred CCC--CCCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHhC--CCEEEEEeCCHHHHHHhcCe
Confidence 221 13456789999999999999999999999999999999999999999999877 3599999999999876 999
Q ss_pred EEEEECCEEEE-ecChhHHh
Q 001438 588 IAVVQGRKIVK-TGSHEELI 606 (1077)
Q Consensus 588 i~~l~~G~i~~-~g~~~~l~ 606 (1077)
|++|++|+++. .|++++.+
T Consensus 223 i~~L~~G~i~~~~g~~~~~~ 242 (635)
T PRK11147 223 IVDLDRGKLVSYPGNYDQYL 242 (635)
T ss_pred EEEEECCEEEEecCCHHHHH
Confidence 99999999974 46666554
|
|
| >COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-38 Score=364.78 Aligned_cols=207 Identities=30% Similarity=0.484 Sum_probs=162.4
Q ss_pred cEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHHHhhhe
Q 001438 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQI 460 (1077)
Q Consensus 381 ~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i 460 (1077)
.|.++|++++|++ +++++|+||++.+|+++||||+||||||||+++|.|...|++|+|...+. -++
T Consensus 3 ~i~~~~ls~~~g~---~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~~G~i~~~~~-----------~~v 68 (530)
T COG0488 3 MITLENLSLAYGD---RPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPKG-----------LRV 68 (530)
T ss_pred eEEEeeeEEeeCC---ceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcCCCCeEeecCC-----------ceE
Confidence 4889999999964 46999999999999999999999999999999999999999999998762 159
Q ss_pred eEEccCCCcccc-cHHHHHhcCCCCCCH--HHHHHHH------------HH-------------HhHHHHHhcCccchhh
Q 001438 461 GLVNQEPALFAT-TIRENILYGKDDATM--EEITRAA------------KL-------------SEAMSFISNLPERFET 512 (1077)
Q Consensus 461 ~~v~Q~~~lf~~-ti~~ni~~~~~~~~~--~~~~~~~------------~~-------------~~~~~~i~~l~~g~~t 512 (1077)
+|++|++.+.+. |++|.+..+...... .+...+. ++ +.+...+..| |+..
T Consensus 69 ~~l~Q~~~~~~~~tv~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gL--g~~~ 146 (530)
T COG0488 69 GYLSQEPPLDPEKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGL--GFPD 146 (530)
T ss_pred EEeCCCCCcCCCccHHHHHHhhhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcC--CCCc
Confidence 999999999876 999999877532110 0000000 00 0111112222 1221
Q ss_pred hhcCCCCCCChHHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEccCchhHhh-cCEEEEE
Q 001438 513 QVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRN-ADVIAVV 591 (1077)
Q Consensus 513 ~~~~~g~~LSgGqkqri~lARal~~~p~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~vtH~~~~~~~-~d~i~~l 591 (1077)
. .....+||||||.|++|||||+.+||+|||||||++||.++..-+.+.|.+. +| |+|+|||+-.++.. |++|+-+
T Consensus 147 ~-~~~~~~LSGG~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~-~g-tviiVSHDR~FLd~V~t~I~~l 223 (530)
T COG0488 147 E-DRPVSSLSGGWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRY-PG-TVIVVSHDRYFLDNVATHILEL 223 (530)
T ss_pred c-cCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhC-CC-cEEEEeCCHHHHHHHhhheEEe
Confidence 1 3345689999999999999999999999999999999999999999999865 45 99999999999987 9999999
Q ss_pred ECCEEE-EecChhHHh
Q 001438 592 QGRKIV-KTGSHEELI 606 (1077)
Q Consensus 592 ~~G~i~-~~g~~~~l~ 606 (1077)
++|++. ..|+++..+
T Consensus 224 d~g~l~~y~Gny~~~~ 239 (530)
T COG0488 224 DRGKLTPYKGNYSSYL 239 (530)
T ss_pred cCCceeEecCCHHHHH
Confidence 999875 345554443
|
|
| >cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-39 Score=331.79 Aligned_cols=172 Identities=46% Similarity=0.695 Sum_probs=158.4
Q ss_pred EEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCC--HHHHhhh
Q 001438 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLD--LKWLRQQ 459 (1077)
Q Consensus 382 i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~--~~~~r~~ 459 (1077)
|+++|++++|++ .++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++.+.+ ...+++.
T Consensus 1 i~~~~l~~~~~~---~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 77 (178)
T cd03229 1 LELKNVSKRYGQ---KTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDELPPLRRR 77 (178)
T ss_pred CEEEEEEEEECC---eEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccchhHHHHhhc
Confidence 478999999964 35899999999999999999999999999999999999999999999999998775 5667889
Q ss_pred eeEEccCCCcccc-cHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHHhccC
Q 001438 460 IGLVNQEPALFAT-TIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKN 538 (1077)
Q Consensus 460 i~~v~Q~~~lf~~-ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~~~ 538 (1077)
++|++|+|.+|.. |++||+.+. ||||||||++||||++++
T Consensus 78 i~~~~q~~~~~~~~t~~~~l~~~---------------------------------------lS~G~~qr~~la~al~~~ 118 (178)
T cd03229 78 IGMVFQDFALFPHLTVLENIALG---------------------------------------LSGGQQQRVALARALAMD 118 (178)
T ss_pred EEEEecCCccCCCCCHHHheeec---------------------------------------CCHHHHHHHHHHHHHHCC
Confidence 9999999998865 999998653 999999999999999999
Q ss_pred CCEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCeEEEEccCchhHhh-cCEEEEEECCE
Q 001438 539 PSILLLDEATSALDAESENSVQEALDRVMV--GRTTVVVAHRLSTIRN-ADVIAVVQGRK 595 (1077)
Q Consensus 539 p~illlDEpts~lD~~~~~~i~~~l~~~~~--~~t~i~vtH~~~~~~~-~d~i~~l~~G~ 595 (1077)
|+++||||||++||+.++..+.+.|+++.+ ++|+|++||+++.+.. ||+|++|++|+
T Consensus 119 p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~ 178 (178)
T cd03229 119 PDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLDEAARLADRVVVLRDGK 178 (178)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeCCC
Confidence 999999999999999999999999988754 6999999999999984 99999999985
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-39 Score=349.22 Aligned_cols=225 Identities=24% Similarity=0.417 Sum_probs=181.7
Q ss_pred cEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCee-----CCCCCHHH
Q 001438 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNN-----IKGLDLKW 455 (1077)
Q Consensus 381 ~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~-----~~~~~~~~ 455 (1077)
.|+++|++++|++ ..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|++ +...+...
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 79 (253)
T TIGR02323 3 LLQVSGLSKSYGG---GKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEAE 79 (253)
T ss_pred eEEEeeeEEEeCC---ceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEecccccccccccCCHHH
Confidence 5899999999964 358999999999999999999999999999999999999999999999987 76665543
Q ss_pred ----HhhheeEEccCCC--cc-cccHHHHHhcCC---CCCCHHHHHHHHHHHhHHHHHhcCccchh-hhhcCCCCCCChH
Q 001438 456 ----LRQQIGLVNQEPA--LF-ATTIRENILYGK---DDATMEEITRAAKLSEAMSFISNLPERFE-TQVGERGIQLSGG 524 (1077)
Q Consensus 456 ----~r~~i~~v~Q~~~--lf-~~ti~~ni~~~~---~~~~~~~~~~~~~~~~~~~~i~~l~~g~~-t~~~~~g~~LSgG 524 (1077)
+++.++|++|++. ++ ..|+.+|+.+.. ......+.. ....++++.+. ++ +..+..+.+||||
T Consensus 80 ~~~~~~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-----~~~~~~l~~l~--l~~~~~~~~~~~LSgG 152 (253)
T TIGR02323 80 RRRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARHYGNIR-----AAAHDWLEEVE--IDPTRIDDLPRAFSGG 152 (253)
T ss_pred HHHhhhcceEEEEeCcccccCccccHHHHHHHHHHHhcccchHHHH-----HHHHHHHHHcC--CChhhhhcCchhcCHH
Confidence 2457999999985 33 348888885421 101111111 12223344442 32 4567778899999
Q ss_pred HHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh--CCCeEEEEccCchhHhh-cCEEEEEECCEEEEecC
Q 001438 525 QKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVM--VGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGS 601 (1077)
Q Consensus 525 qkqri~lARal~~~p~illlDEpts~lD~~~~~~i~~~l~~~~--~~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~g~ 601 (1077)
||||++||||++.+|++|||||||++||+.+.+.+.+.|++.. .+.|+|++||+++.+.. ||++++|++|++++.|+
T Consensus 153 ~~qrv~laral~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~~~~~~~~~d~~~~l~~G~i~~~~~ 232 (253)
T TIGR02323 153 MQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLGVARLLAQRLLVMQQGRVVESGL 232 (253)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEECC
Confidence 9999999999999999999999999999999999999998864 38999999999999875 99999999999999999
Q ss_pred hhHHhcCCCchHHH
Q 001438 602 HEELISNPNSAYAA 615 (1077)
Q Consensus 602 ~~~l~~~~~~~~~~ 615 (1077)
++++..++...|.+
T Consensus 233 ~~~~~~~~~~~~~~ 246 (253)
T TIGR02323 233 TDQVLDDPQHPYTQ 246 (253)
T ss_pred HHHHhcCCCCHHHH
Confidence 99987654445543
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se. |
| >COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-39 Score=315.10 Aligned_cols=213 Identities=27% Similarity=0.465 Sum_probs=181.5
Q ss_pred EEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHHHhhhee
Q 001438 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIG 461 (1077)
Q Consensus 382 i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 461 (1077)
|+.+|++++-.+ +.+|+++||++++||.++|+||||+|||||++.|.|++.|++|++.++|+++.++...++.++-+
T Consensus 2 i~a~nls~~~~G---r~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p~~G~v~~~g~~l~~~~~~~lA~~ra 78 (259)
T COG4559 2 IRAENLSYSLAG---RRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEELARHRA 78 (259)
T ss_pred eeeeeeEEEeec---ceeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccCCCCCeEeeCCcChhhCCHHHHHHHhh
Confidence 788999998754 45899999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEccCCCc-ccccHHHHHhcCCCCC----C--H-HHHH-HHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHH
Q 001438 462 LVNQEPAL-FATTIRENILYGKDDA----T--M-EEIT-RAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAIS 532 (1077)
Q Consensus 462 ~v~Q~~~l-f~~ti~~ni~~~~~~~----~--~-~~~~-~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lA 532 (1077)
++||+..+ |+.|++|-+.+|.-.. . . +++. ++...+.+ ..+ -+..-..||||||||+.+|
T Consensus 79 VlpQ~s~laFpFtv~eVV~mGr~p~~~g~~~~e~~~i~~~ala~~d~----~~l-------a~R~y~~LSGGEqQRVqlA 147 (259)
T COG4559 79 VLPQNSSLAFPFTVQEVVQMGRIPHRSGREPEEDERIAAQALAATDL----SGL-------AGRDYRTLSGGEQQRVQLA 147 (259)
T ss_pred hcccCcccccceEHHHHHHhcccccccCCCchhhHHHHHHHHHHcCh----hhh-------hccchhhcCchHHHHHHHH
Confidence 99999887 9999999999997221 1 1 2222 22222222 222 2334458999999999999
Q ss_pred HHhcc------CCCEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCeEEEEccCchhH-hhcCEEEEEECCEEEEecChhH
Q 001438 533 RAIVK------NPSILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLSTI-RNADVIAVVQGRKIVKTGSHEE 604 (1077)
Q Consensus 533 Ral~~------~p~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~vtH~~~~~-~~~d~i~~l~~G~i~~~g~~~~ 604 (1077)
|.|.+ ++++|+||||||+||...++.+++..+++. .|..|+.|-||++.. .+||||++|.+||++..|++++
T Consensus 148 RvLaQl~~~v~~~r~L~LDEPtsaLDi~HQ~~tl~laR~la~~g~~V~~VLHDLNLAA~YaDrivll~~Grv~a~g~p~~ 227 (259)
T COG4559 148 RVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLAREGGAVLAVLHDLNLAAQYADRIVLLHQGRVIASGSPQD 227 (259)
T ss_pred HHHHHccCCCCCCceEEecCCccccchHHHHHHHHHHHHHHhcCCcEEEEEccchHHHHhhheeeeeeCCeEeecCCHHH
Confidence 99976 456999999999999999999999998874 688999999999986 5699999999999999999999
Q ss_pred HhcC
Q 001438 605 LISN 608 (1077)
Q Consensus 605 l~~~ 608 (1077)
.+..
T Consensus 228 vlt~ 231 (259)
T COG4559 228 VLTD 231 (259)
T ss_pred hcCH
Confidence 8864
|
|
| >TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-39 Score=342.61 Aligned_cols=208 Identities=31% Similarity=0.477 Sum_probs=173.0
Q ss_pred EEEEeEEEEcCCCC-CcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHH---HHh
Q 001438 382 IEFKDVSFCYPSRP-DVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLK---WLR 457 (1077)
Q Consensus 382 i~~~~v~~~y~~~~-~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~---~~r 457 (1077)
++++|+++.|++.. ...+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+.. ..+
T Consensus 2 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (220)
T TIGR02982 2 ISIRNLNHYYGHGSLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQLR 81 (220)
T ss_pred EEEEEEEEEccCCCcceeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEhHhcCHhHHHHHH
Confidence 78999999996421 24689999999999999999999999999999999999999999999999999776643 467
Q ss_pred hheeEEccCCCccc-ccHHHHHhcCCC---CCCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHH
Q 001438 458 QQIGLVNQEPALFA-TTIRENILYGKD---DATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISR 533 (1077)
Q Consensus 458 ~~i~~v~Q~~~lf~-~ti~~ni~~~~~---~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lAR 533 (1077)
+.++|+||++.+|. .|+.||+.++.. ....++..+. ..+.++.+ |++......+.+||||||||++|||
T Consensus 82 ~~i~~~~q~~~~~~~~t~~~n~~~~~~~~~~~~~~~~~~~-----~~~~l~~~--~l~~~~~~~~~~lS~G~~qrv~lar 154 (220)
T TIGR02982 82 RNIGYIFQAHNLLGFLTARQNVQMALELQPNLSYQEARER-----ARAMLEAV--GLGDHLDYYPHNLSGGQKQRVAIAR 154 (220)
T ss_pred hheEEEcCChhhcCCCCHHHHHHHHHHhccCCCHHHHHHH-----HHHHHHHc--CChhhhhcChhhCCHHHHHHHHHHH
Confidence 88999999999987 599999987532 1122222211 11223333 3444556667799999999999999
Q ss_pred HhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh--CCCeEEEEccCchhHhhcCEEEEEECCEE
Q 001438 534 AIVKNPSILLLDEATSALDAESENSVQEALDRVM--VGRTTVVVAHRLSTIRNADVIAVVQGRKI 596 (1077)
Q Consensus 534 al~~~p~illlDEpts~lD~~~~~~i~~~l~~~~--~~~t~i~vtH~~~~~~~~d~i~~l~~G~i 596 (1077)
|++.+|+++||||||++||+++++.+.+.|+++. +++|+|++||+++....||+|++|++|++
T Consensus 155 al~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~~~~~~~d~v~~l~~g~~ 219 (220)
T TIGR02982 155 ALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHDNRILDVADRIVHMEDGKL 219 (220)
T ss_pred HHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHhhCCEEEEEECCEE
Confidence 9999999999999999999999999999998875 37999999999997777999999999986
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. |
| >cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-39 Score=340.11 Aligned_cols=204 Identities=31% Similarity=0.462 Sum_probs=168.3
Q ss_pred EEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCC----CHHHHhh
Q 001438 383 EFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGL----DLKWLRQ 458 (1077)
Q Consensus 383 ~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~----~~~~~r~ 458 (1077)
++ |++++|++. .+ |+||++++ |+++|+||||||||||+++|+|+++|++|+|.++|.++... +....++
T Consensus 3 ~~-~l~~~~~~~---~~--~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 75 (214)
T cd03297 3 CV-DIEKRLPDF---TL--KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQR 75 (214)
T ss_pred ee-eeeEecCCe---ee--CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEecccccchhhhhhHhh
Confidence 44 899999743 34 99999999 99999999999999999999999999999999999988643 2335677
Q ss_pred heeEEccCCCcccc-cHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHHhcc
Q 001438 459 QIGLVNQEPALFAT-TIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVK 537 (1077)
Q Consensus 459 ~i~~v~Q~~~lf~~-ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~~ 537 (1077)
+++|++|++.+|+. |++||+.++......+... ....++++.+ |++......+.+||||||||++||||++.
T Consensus 76 ~i~~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~la~al~~ 148 (214)
T cd03297 76 KIGLVFQQYALFPHLNVRENLAFGLKRKRNREDR-----ISVDELLDLL--GLDHLLNRYPAQLSGGEKQRVALARALAA 148 (214)
T ss_pred cEEEEecCCccCCCCCHHHHHHHHHhhCCHHHHH-----HHHHHHHHHc--CCHhHhhcCcccCCHHHHHHHHHHHHHhc
Confidence 89999999999865 9999998764322211111 1112223333 45555667788999999999999999999
Q ss_pred CCCEEEEeCcCCCCCHHHHHHHHHHHHHHh-C-CCeEEEEccCchhHhh-cCEEEEEECCEEEEec
Q 001438 538 NPSILLLDEATSALDAESENSVQEALDRVM-V-GRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTG 600 (1077)
Q Consensus 538 ~p~illlDEpts~lD~~~~~~i~~~l~~~~-~-~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~g 600 (1077)
+|+++||||||++||+.+.+.+.+.|+++. + ++|+|++||+++.+.. ||++++|++|++++.|
T Consensus 149 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g 214 (214)
T cd03297 149 QPELLLLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHDLSEAEYLADRIVVMEDGRLQYIG 214 (214)
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEecCHHHHHHhcCEEEEEECCEEEecC
Confidence 999999999999999999999999998874 3 7999999999999864 9999999999998765
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-38 Score=347.34 Aligned_cols=217 Identities=25% Similarity=0.402 Sum_probs=175.2
Q ss_pred cEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCC----CccEEEECCeeCCCCCHHHH
Q 001438 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEP----LSGEILLDGNNIKGLDLKWL 456 (1077)
Q Consensus 381 ~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~----~~G~i~~~g~~~~~~~~~~~ 456 (1077)
.++++|++++| + .++|+|+||++++||+++|+||||||||||+++|+|+++| ++|+|.++|+++... +..
T Consensus 4 ~l~~~~l~~~~-~---~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~~--~~~ 77 (254)
T PRK10418 4 QIELRNIALQA-A---QPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPC--ALR 77 (254)
T ss_pred EEEEeCeEEEe-c---cceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeecccc--ccc
Confidence 58999999999 2 2589999999999999999999999999999999999999 999999999988632 223
Q ss_pred hhheeEEccCCC-ccc--ccHHHHHhcCC----CCCCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHH
Q 001438 457 RQQIGLVNQEPA-LFA--TTIRENILYGK----DDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRI 529 (1077)
Q Consensus 457 r~~i~~v~Q~~~-lf~--~ti~~ni~~~~----~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri 529 (1077)
++.++|++|++. .|. .|+.+|+.+.. .....+++.+.++. + .+++ .++.++....+||||||||+
T Consensus 78 ~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~------~-~l~~-~~~~~~~~~~~LS~Gq~qrv 149 (254)
T PRK10418 78 GRKIATIMQNPRSAFNPLHTMHTHARETCLALGKPADDATLTAALEA------V-GLEN-AARVLKLYPFEMSGGMLQRM 149 (254)
T ss_pred cceEEEEecCCccccCccccHHHHHHHHHHHcCCChHHHHHHHHHHH------c-CCCC-hhhhhhcCCcccCHHHHHHH
Confidence 457999999985 343 48888875421 11111122222221 1 1211 12345677889999999999
Q ss_pred HHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh--CCCeEEEEccCchhHh-hcCEEEEEECCEEEEecChhHHh
Q 001438 530 AISRAIVKNPSILLLDEATSALDAESENSVQEALDRVM--VGRTTVVVAHRLSTIR-NADVIAVVQGRKIVKTGSHEELI 606 (1077)
Q Consensus 530 ~lARal~~~p~illlDEpts~lD~~~~~~i~~~l~~~~--~~~t~i~vtH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~ 606 (1077)
+||||++.+|++|||||||++||+.+.+.+.+.|+++. .++|+|++||+++.+. .||++++|++|++++.|+++++.
T Consensus 150 ~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 229 (254)
T PRK10418 150 MIALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDMGVVARLADDVAVMSHGRIVEQGDVETLF 229 (254)
T ss_pred HHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHh
Confidence 99999999999999999999999999999999998874 3789999999999986 49999999999999999999997
Q ss_pred cCCCc
Q 001438 607 SNPNS 611 (1077)
Q Consensus 607 ~~~~~ 611 (1077)
+++..
T Consensus 230 ~~~~~ 234 (254)
T PRK10418 230 NAPKH 234 (254)
T ss_pred hCCCC
Confidence 76443
|
|
| >cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-39 Score=333.97 Aligned_cols=183 Identities=31% Similarity=0.531 Sum_probs=161.9
Q ss_pred cEEEEeEEEEcCCC---CCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhccc--CCCccEEEECCeeCCCCCHHH
Q 001438 381 HIEFKDVSFCYPSR---PDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFY--EPLSGEILLDGNNIKGLDLKW 455 (1077)
Q Consensus 381 ~i~~~~v~~~y~~~---~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~--~~~~G~i~~~g~~~~~~~~~~ 455 (1077)
.++++|++++|++. .+.++++|+||++++||+++|+||||||||||+++|+|++ +|++|+|.+||+++.. ..
T Consensus 3 ~l~~~~ls~~~~~~~~~~~~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~~g~~~~~---~~ 79 (194)
T cd03213 3 TLSFRNLTVTVKSSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDK---RS 79 (194)
T ss_pred EEEEEeeEEEEecCCCcccccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEeCch---Hh
Confidence 48999999999742 0246999999999999999999999999999999999999 9999999999998864 36
Q ss_pred HhhheeEEccCCCcccc-cHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHH
Q 001438 456 LRQQIGLVNQEPALFAT-TIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRA 534 (1077)
Q Consensus 456 ~r~~i~~v~Q~~~lf~~-ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARa 534 (1077)
++++++|++|++.+|.. |++||+.++.. +. .||||||||++||||
T Consensus 80 ~~~~i~~~~q~~~~~~~~t~~~~i~~~~~-------------------~~---------------~LS~G~~qrv~lara 125 (194)
T cd03213 80 FRKIIGYVPQDDILHPTLTVRETLMFAAK-------------------LR---------------GLSGGERKRVSIALE 125 (194)
T ss_pred hhheEEEccCcccCCCCCcHHHHHHHHHH-------------------hc---------------cCCHHHHHHHHHHHH
Confidence 67889999999998875 99999965310 00 799999999999999
Q ss_pred hccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCeEEEEccCch-hHh-hcCEEEEEECCEEEEec
Q 001438 535 IVKNPSILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLS-TIR-NADVIAVVQGRKIVKTG 600 (1077)
Q Consensus 535 l~~~p~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~vtH~~~-~~~-~~d~i~~l~~G~i~~~g 600 (1077)
++.+|+++||||||++||+.+.+.+.+.|+++. +++|+|++||+++ .+. .||++++|++|++++.|
T Consensus 126 l~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~v~~l~~G~i~~~~ 194 (194)
T cd03213 126 LVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQPSSEIFELFDKLLLLSQGRVIYFG 194 (194)
T ss_pred HHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchHHHHHhcCEEEEEeCCEEEecC
Confidence 999999999999999999999999999998875 4899999999997 454 59999999999998754
|
DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. |
| >PLN03073 ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-38 Score=383.73 Aligned_cols=219 Identities=25% Similarity=0.319 Sum_probs=158.7
Q ss_pred ccEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhccc---CCCccEEEECCeeCCCCC--H-
Q 001438 380 GHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFY---EPLSGEILLDGNNIKGLD--L- 453 (1077)
Q Consensus 380 ~~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~---~~~~G~i~~~g~~~~~~~--~- 453 (1077)
..|+++|++++|++ .++|+|+||+|++|+++|||||||||||||+++|+|.. .|.+|+|.+.++++...+ .
T Consensus 176 ~~I~i~nls~~y~~---~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~~g~p~~g~I~~~~Q~~~g~~~t~~ 252 (718)
T PLN03073 176 KDIHMENFSISVGG---RDLIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAIDGIPKNCQILHVEQEVVGDDTTAL 252 (718)
T ss_pred eeEEEceEEEEeCC---CEEEECCEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCCCCEEEEEeccCCCCCCCHH
Confidence 45999999999964 35999999999999999999999999999999999864 588999976555432111 1
Q ss_pred -----------HHHhhheeEEccCCCcccccHHHHHhcCCC-CCCHHH----HHHHHHHHh----------HHHHHhcCc
Q 001438 454 -----------KWLRQQIGLVNQEPALFATTIRENILYGKD-DATMEE----ITRAAKLSE----------AMSFISNLP 507 (1077)
Q Consensus 454 -----------~~~r~~i~~v~Q~~~lf~~ti~~ni~~~~~-~~~~~~----~~~~~~~~~----------~~~~i~~l~ 507 (1077)
..+++.++|++|+|.+...+..+|...... ....++ +.++.+..+ +...+..+
T Consensus 253 ~~v~~~~~~~~~~~~~~~~~~~q~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~r~~~~L~~l- 331 (718)
T PLN03073 253 QCVLNTDIERTQLLEEEAQLVAQQRELEFETETGKGKGANKDGVDKDAVSQRLEEIYKRLELIDAYTAEARAASILAGL- 331 (718)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHhhhcccccccccccccccchHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHC-
Confidence 113455889999887654455455422111 011111 111111110 11111111
Q ss_pred cchh-hhhcCCCCCCChHHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEccCchhHhh-c
Q 001438 508 ERFE-TQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRN-A 585 (1077)
Q Consensus 508 ~g~~-t~~~~~g~~LSgGqkqri~lARal~~~p~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~vtH~~~~~~~-~ 585 (1077)
|++ ........+||||||||++|||||+.+|++|||||||++||+.+...+.+.|+++ +.|+|+|||+++.+.. |
T Consensus 332 -gl~~~~~~~~~~~LSgG~k~rv~LA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~--~~tviivsHd~~~l~~~~ 408 (718)
T PLN03073 332 -SFTPEMQVKATKTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLKW--PKTFIVVSHAREFLNTVV 408 (718)
T ss_pred -CCChHHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHc--CCEEEEEECCHHHHHHhC
Confidence 221 1223445689999999999999999999999999999999999999999999876 6899999999999876 9
Q ss_pred CEEEEEECCEEE-EecChhHH
Q 001438 586 DVIAVVQGRKIV-KTGSHEEL 605 (1077)
Q Consensus 586 d~i~~l~~G~i~-~~g~~~~l 605 (1077)
|+|++|++|++. ..|++++.
T Consensus 409 d~i~~l~~g~i~~~~g~~~~~ 429 (718)
T PLN03073 409 TDILHLHGQKLVTYKGDYDTF 429 (718)
T ss_pred CEEEEEECCEEEEeCCCHHHH
Confidence 999999999996 56666554
|
|
| >COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-39 Score=305.19 Aligned_cols=211 Identities=29% Similarity=0.411 Sum_probs=175.8
Q ss_pred cEEEEeEEEEcCCC-CCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHH---H
Q 001438 381 HIEFKDVSFCYPSR-PDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKW---L 456 (1077)
Q Consensus 381 ~i~~~~v~~~y~~~-~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~---~ 456 (1077)
-|+++++++.-++. ....+|++++|.|++||.++||||||||||||+.++.|+-+|++|+|.+.|+++.+++.+. +
T Consensus 6 ii~~~~l~ktvg~~~~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~ssGeV~l~G~~L~~ldEd~rA~~ 85 (228)
T COG4181 6 IIEVHHLSKTVGQGEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARAAL 85 (228)
T ss_pred eeehhhhhhhhcCCCcceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCCCCCceEEEcCcchhhcCHHHHHHh
Confidence 47888888877543 2356999999999999999999999999999999999999999999999999999998653 4
Q ss_pred h-hheeEEccCCCcccc-cHHHHHhcCCCCCC---HHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHH
Q 001438 457 R-QQIGLVNQEPALFAT-TIRENILYGKDDAT---MEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAI 531 (1077)
Q Consensus 457 r-~~i~~v~Q~~~lf~~-ti~~ni~~~~~~~~---~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~l 531 (1077)
| +++|+|+|...|.+. |-.||+..+..... .+....|.++ ++.. |+...+...+.+||||++||++|
T Consensus 86 R~~~vGfVFQSF~Lip~ltAlENV~lPleL~ge~~~~~~~~A~~l------L~~v--GLg~Rl~HyP~qLSGGEQQRVAi 157 (228)
T COG4181 86 RARHVGFVFQSFHLIPNLTALENVALPLELRGESSADSRAGAKAL------LEAV--GLGKRLTHYPAQLSGGEQQRVAL 157 (228)
T ss_pred hccceeEEEEeeeccccchhhhhccchhhhcCCccccHHHHHHHH------HHHh--CcccccccCccccCchHHHHHHH
Confidence 4 579999999988755 99999987652211 1111122221 2221 55556677788999999999999
Q ss_pred HHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHH--hCCCeEEEEccCchhHhhcCEEEEEECCEEEEe
Q 001438 532 SRAIVKNPSILLLDEATSALDAESENSVQEALDRV--MVGRTTVVVAHRLSTIRNADVIAVVQGRKIVKT 599 (1077)
Q Consensus 532 ARal~~~p~illlDEpts~lD~~~~~~i~~~l~~~--~~~~t~i~vtH~~~~~~~~d~i~~l~~G~i~~~ 599 (1077)
|||+...|+||+-||||-+||.+|.++|.+.+-.+ ..|.|.|+|||+.....+|||++.|.+|++++.
T Consensus 158 ARAfa~~P~vLfADEPTGNLD~~Tg~~iaDLlF~lnre~G~TlVlVTHD~~LA~Rc~R~~r~~~G~l~~~ 227 (228)
T COG4181 158 ARAFAGRPDVLFADEPTGNLDRATGDKIADLLFALNRERGTTLVLVTHDPQLAARCDRQLRLRSGRLVED 227 (228)
T ss_pred HHHhcCCCCEEeccCCCCCcchhHHHHHHHHHHHHhhhcCceEEEEeCCHHHHHhhhheeeeecceeccC
Confidence 99999999999999999999999999999988665 358999999999999999999999999999863
|
|
| >TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-38 Score=341.70 Aligned_cols=205 Identities=27% Similarity=0.444 Sum_probs=171.2
Q ss_pred EEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHHHhhhee
Q 001438 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIG 461 (1077)
Q Consensus 382 i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 461 (1077)
++++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++.... ++.++
T Consensus 1 l~l~~v~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~~~~~----~~~~~ 73 (223)
T TIGR03740 1 LETKNLSKRFGK---QTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTRKD----LHKIG 73 (223)
T ss_pred CEEEeEEEEECC---EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEeccccc----cccEE
Confidence 478999999974 35899999999999999999999999999999999999999999999999875322 24799
Q ss_pred EEccCCCccc-ccHHHHHhcCCC--CCCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHHhccC
Q 001438 462 LVNQEPALFA-TTIRENILYGKD--DATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKN 538 (1077)
Q Consensus 462 ~v~Q~~~lf~-~ti~~ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~~~ 538 (1077)
|+||++.+|. .|++||+.++.. ....+++.+.++.. |++........+||||||||++||||++.+
T Consensus 74 ~~~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~~~LS~G~~~rv~laral~~~ 142 (223)
T TIGR03740 74 SLIESPPLYENLTARENLKVHTTLLGLPDSRIDEVLNIV-----------DLTNTGKKKAKQFSLGMKQRLGIAIALLNH 142 (223)
T ss_pred EEcCCCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHc-----------CCcHHHhhhHhhCCHHHHHHHHHHHHHhcC
Confidence 9999999886 499999976431 11223332222221 222233445678999999999999999999
Q ss_pred CCEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCeEEEEccCchhHh-hcCEEEEEECCEEEEecChhH
Q 001438 539 PSILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLSTIR-NADVIAVVQGRKIVKTGSHEE 604 (1077)
Q Consensus 539 p~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~vtH~~~~~~-~~d~i~~l~~G~i~~~g~~~~ 604 (1077)
|+++||||||++||+.+.+.+.+.|+++. +++|+|++||+++.+. .||+|++|++|++++.|++++
T Consensus 143 p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~ 210 (223)
T TIGR03740 143 PKLLILDEPTNGLDPIGIQELRELIRSFPEQGITVILSSHILSEVQQLADHIGIISEGVLGYQGKINK 210 (223)
T ss_pred CCEEEECCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEeCCEEEEecChhh
Confidence 99999999999999999999999998875 4789999999999986 599999999999999998765
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. |
| >cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-38 Score=333.04 Aligned_cols=185 Identities=30% Similarity=0.450 Sum_probs=163.1
Q ss_pred EEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcc--cCCCccEEEECCeeCCCCCHHHH-hh
Q 001438 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERF--YEPLSGEILLDGNNIKGLDLKWL-RQ 458 (1077)
Q Consensus 382 i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~--~~~~~G~i~~~g~~~~~~~~~~~-r~ 458 (1077)
++++|++++|++ .++++|+||++++||+++|+||||||||||+++|+|+ ++|++|+|.+||+++.+.+.... |.
T Consensus 1 l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~~~~~~ 77 (200)
T cd03217 1 LEIKDLHVSVGG---KEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEERARL 77 (200)
T ss_pred CeEEEEEEEeCC---EEeeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCHHHHhhC
Confidence 478999999973 3599999999999999999999999999999999999 58999999999999988776554 45
Q ss_pred heeEEccCCCcccc-cHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHHhcc
Q 001438 459 QIGLVNQEPALFAT-TIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVK 537 (1077)
Q Consensus 459 ~i~~v~Q~~~lf~~-ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~~ 537 (1077)
+++|+||++.+|++ ++++|+ .. ...+||||||||++||||++.
T Consensus 78 ~i~~v~q~~~~~~~~~~~~~l-------------------------~~-----------~~~~LS~G~~qrv~laral~~ 121 (200)
T cd03217 78 GIFLAFQYPPEIPGVKNADFL-------------------------RY-----------VNEGFSGGEKKRNEILQLLLL 121 (200)
T ss_pred cEEEeecChhhccCccHHHHH-------------------------hh-----------ccccCCHHHHHHHHHHHHHhc
Confidence 69999999998876 666655 00 113799999999999999999
Q ss_pred CCCEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCeEEEEccCchhHh--hcCEEEEEECCEEEEecChhHHh
Q 001438 538 NPSILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLSTIR--NADVIAVVQGRKIVKTGSHEELI 606 (1077)
Q Consensus 538 ~p~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~vtH~~~~~~--~~d~i~~l~~G~i~~~g~~~~l~ 606 (1077)
+|+++||||||++||+.+.+.+.+.|+++. +++|+|++||+++.+. .||++++|++|++++.| +.|+.
T Consensus 122 ~p~illlDEPt~~LD~~~~~~l~~~L~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~~-~~~~~ 192 (200)
T cd03217 122 EPDLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITHYQRLLDYIKPDRVHVLYDGRIVKSG-DKELA 192 (200)
T ss_pred CCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhhCCEEEEEECCEEEEEc-cHHHH
Confidence 999999999999999999999999998875 4789999999999987 69999999999999999 44454
|
Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. |
| >COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-38 Score=337.51 Aligned_cols=226 Identities=31% Similarity=0.495 Sum_probs=188.9
Q ss_pred cccEEEEeEEEEcCCCC--------CcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCC
Q 001438 379 SGHIEFKDVSFCYPSRP--------DVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKG 450 (1077)
Q Consensus 379 ~~~i~~~~v~~~y~~~~--------~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~ 450 (1077)
+.-++.+|+...|+-++ ...+.+++||++++||.+||||+||||||||-.+|+|+.++. |+|.++|+++..
T Consensus 274 ~~ll~~~~v~v~f~i~~g~~~r~~~~~~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allrL~~s~-G~I~F~G~~i~~ 352 (534)
T COG4172 274 PVLLEVEDLRVWFPIKGGFLRRTVDHLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPSQ-GEIRFDGQDIDG 352 (534)
T ss_pred CceEEecceEEEEecCCccccccchheEEeccceeEecCCCeEEEEecCCCCcchHHHHHHhhcCcC-ceEEECCccccc
Confidence 34589999999987432 235789999999999999999999999999999999999887 999999999999
Q ss_pred CCHHH---HhhheeEEccCCCc-c-c-ccHHHHHhcCC----CCCCH----HHHHHHHHHHhHHHHHhcCccchhh-hhc
Q 001438 451 LDLKW---LRQQIGLVNQEPAL-F-A-TTIRENILYGK----DDATM----EEITRAAKLSEAMSFISNLPERFET-QVG 515 (1077)
Q Consensus 451 ~~~~~---~r~~i~~v~Q~~~l-f-~-~ti~~ni~~~~----~~~~~----~~~~~~~~~~~~~~~i~~l~~g~~t-~~~ 515 (1077)
++.++ +|+++-.|+|||+= + + .||.+-|.-|. +..+. +.+.+|++-+ |+|- ..+
T Consensus 353 ~~~~~mrplR~~mQvVFQDPygSLsPRmtV~qII~EGL~vh~~~ls~~eR~~rv~~aL~EV-----------GLDp~~r~ 421 (534)
T COG4172 353 LSRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEPKLSAAERDQRVIEALEEV-----------GLDPATRN 421 (534)
T ss_pred cChhhhhhhhhhceEEEeCCCCCCCcccCHHHHhhhhhhhcCCCCCHHHHHHHHHHHHHHc-----------CCChhHhh
Confidence 88765 57899999999972 3 2 48888776653 23222 2233333222 2322 345
Q ss_pred CCCCCCChHHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh--CCCeEEEEccCchhHhh-cCEEEEEE
Q 001438 516 ERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVM--VGRTTVVVAHRLSTIRN-ADVIAVVQ 592 (1077)
Q Consensus 516 ~~g~~LSgGqkqri~lARal~~~p~illlDEpts~lD~~~~~~i~~~l~~~~--~~~t~i~vtH~~~~~~~-~d~i~~l~ 592 (1077)
..+..+|||||||||||||++-+|++++|||||||||...+.+|.+.|+++. .+-+-++|||++..++. ||+|+||+
T Consensus 422 RYPhEFSGGQRQRIAIARAliLkP~~i~LDEPTSALD~SVQaQvv~LLr~LQ~k~~LsYLFISHDL~VvrAl~~~viVm~ 501 (534)
T COG4172 422 RYPHEFSGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDLQQKHGLSYLFISHDLAVVRALCHRVIVMR 501 (534)
T ss_pred cCCcccCcchhhHHHHHHHHhcCCcEEEecCCchHhhHHHHHHHHHHHHHHHHHhCCeEEEEeccHHHHHHhhceEEEEe
Confidence 6778999999999999999999999999999999999999999999999874 57899999999999987 99999999
Q ss_pred CCEEEEecChhHHhcCCCchHHHH
Q 001438 593 GRKIVKTGSHEELISNPNSAYAAL 616 (1077)
Q Consensus 593 ~G~i~~~g~~~~l~~~~~~~~~~~ 616 (1077)
+|+|+|+|+.+++.++|...|.+-
T Consensus 502 ~GkiVE~G~~~~if~~P~~~YT~~ 525 (534)
T COG4172 502 DGKIVEQGPTEAVFANPQHEYTRA 525 (534)
T ss_pred CCEEeeeCCHHHHhcCCCcHHHHH
Confidence 999999999999999999888753
|
|
| >cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-38 Score=332.10 Aligned_cols=182 Identities=26% Similarity=0.474 Sum_probs=160.7
Q ss_pred cEEEEeEEEEcCCCC-CcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhccc--CCCccEEEECCeeCCCCCHHHHh
Q 001438 381 HIEFKDVSFCYPSRP-DVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFY--EPLSGEILLDGNNIKGLDLKWLR 457 (1077)
Q Consensus 381 ~i~~~~v~~~y~~~~-~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~--~~~~G~i~~~g~~~~~~~~~~~r 457 (1077)
.|+++|+++.|++.. +.++++|+||++++||+++|+||||||||||+++|+|++ +|++|+|.++|+++. ..++
T Consensus 3 ~l~~~~l~~~~~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~~----~~~~ 78 (192)
T cd03232 3 VLTWKNLNYTVPVKGGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLD----KNFQ 78 (192)
T ss_pred EEEEeeeEEEecCCCCceEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEehH----HHhh
Confidence 489999999997421 246899999999999999999999999999999999986 489999999999875 4567
Q ss_pred hheeEEccCCCcccc-cHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHHhc
Q 001438 458 QQIGLVNQEPALFAT-TIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIV 536 (1077)
Q Consensus 458 ~~i~~v~Q~~~lf~~-ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~ 536 (1077)
++++|++|++.+|+. |++||+.++.. +. +||||||||++||||++
T Consensus 79 ~~i~~~~q~~~~~~~~tv~~~l~~~~~-------------------~~---------------~LSgGe~qrv~la~al~ 124 (192)
T cd03232 79 RSTGYVEQQDVHSPNLTVREALRFSAL-------------------LR---------------GLSVEQRKRLTIGVELA 124 (192)
T ss_pred hceEEecccCccccCCcHHHHHHHHHH-------------------Hh---------------cCCHHHhHHHHHHHHHh
Confidence 789999999988875 99999985310 00 79999999999999999
Q ss_pred cCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCeEEEEccCchh-H-hhcCEEEEEEC-CEEEEec
Q 001438 537 KNPSILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLST-I-RNADVIAVVQG-RKIVKTG 600 (1077)
Q Consensus 537 ~~p~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~vtH~~~~-~-~~~d~i~~l~~-G~i~~~g 600 (1077)
.+|+++||||||++||+.+.+.+.+.|+++. +++|+|++||+++. + ..||+|++|++ |++++.|
T Consensus 125 ~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiiivtH~~~~~~~~~~d~i~~l~~~g~i~~~g 192 (192)
T cd03232 125 AKPSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQPSASIFEKFDRLLLLKRGGKTVYFG 192 (192)
T ss_pred cCCcEEEEeCCCcCCCHHHHHHHHHHHHHHHHcCCEEEEEEcCChHHHHhhCCEEEEEcCCCeEEeCC
Confidence 9999999999999999999999999998875 48999999999984 4 56999999999 9999865
|
PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-38 Score=322.10 Aligned_cols=164 Identities=32% Similarity=0.516 Sum_probs=150.3
Q ss_pred EEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHHHhhhee
Q 001438 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIG 461 (1077)
Q Consensus 382 i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 461 (1077)
|+++|++++|++. +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|. ++++
T Consensus 1 i~~~~~~~~~~~~--~~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~-----------~~i~ 67 (166)
T cd03223 1 IELENLSLATPDG--RVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEG-----------EDLL 67 (166)
T ss_pred CEEEEEEEEcCCC--CeeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCC-----------ceEE
Confidence 4789999999642 35899999999999999999999999999999999999999999999883 4799
Q ss_pred EEccCCCcccccHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHHhccCCCE
Q 001438 462 LVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSI 541 (1077)
Q Consensus 462 ~v~Q~~~lf~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~~~p~i 541 (1077)
|++|++.+++.|++||+.++ .+.+||||||||++||||++++|++
T Consensus 68 ~~~q~~~~~~~tv~~nl~~~-----------------------------------~~~~LS~G~~~rv~laral~~~p~~ 112 (166)
T cd03223 68 FLPQRPYLPLGTLREQLIYP-----------------------------------WDDVLSGGEQQRLAFARLLLHKPKF 112 (166)
T ss_pred EECCCCccccccHHHHhhcc-----------------------------------CCCCCCHHHHHHHHHHHHHHcCCCE
Confidence 99999999988999999763 2358999999999999999999999
Q ss_pred EEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEccCchhHhhcCEEEEEECCE
Q 001438 542 LLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRNADVIAVVQGRK 595 (1077)
Q Consensus 542 lllDEpts~lD~~~~~~i~~~l~~~~~~~t~i~vtH~~~~~~~~d~i~~l~~G~ 595 (1077)
+||||||++||+++.+.+.+.|++. ++|+|++||+++....||++++|++|-
T Consensus 113 lllDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsh~~~~~~~~d~i~~l~~~~ 164 (166)
T cd03223 113 VFLDEATSALDEESEDRLYQLLKEL--GITVISVGHRPSLWKFHDRVLDLDGEG 164 (166)
T ss_pred EEEECCccccCHHHHHHHHHHHHHh--CCEEEEEeCChhHHhhCCEEEEEcCCC
Confidence 9999999999999999999999876 689999999999877899999998863
|
The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt |
| >cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-38 Score=328.70 Aligned_cols=172 Identities=25% Similarity=0.459 Sum_probs=156.4
Q ss_pred cEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCH-HHHhhh
Q 001438 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDL-KWLRQQ 459 (1077)
Q Consensus 381 ~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~-~~~r~~ 459 (1077)
.++++|++++| +++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+. ...|++
T Consensus 4 ~l~~~~l~~~~-------~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 76 (182)
T cd03215 4 VLEVRGLSVKG-------AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDAIRAG 76 (182)
T ss_pred EEEEeccEEEe-------eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccCHHHHHhCC
Confidence 48999999988 6999999999999999999999999999999999999999999999999988764 456778
Q ss_pred eeEEccCC---Ccc-cccHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHHh
Q 001438 460 IGLVNQEP---ALF-ATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAI 535 (1077)
Q Consensus 460 i~~v~Q~~---~lf-~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal 535 (1077)
++|++|++ .++ ..|++||+.++.. ||||||||++||||+
T Consensus 77 i~~~~q~~~~~~~~~~~t~~e~l~~~~~-------------------------------------LS~G~~qrl~la~al 119 (182)
T cd03215 77 IAYVPEDRKREGLVLDLSVAENIALSSL-------------------------------------LSGGNQQKVVLARWL 119 (182)
T ss_pred eEEecCCcccCcccCCCcHHHHHHHHhh-------------------------------------cCHHHHHHHHHHHHH
Confidence 99999995 345 4699999976421 999999999999999
Q ss_pred ccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCeEEEEccCchhHhh-cCEEEEEECCEE
Q 001438 536 VKNPSILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLSTIRN-ADVIAVVQGRKI 596 (1077)
Q Consensus 536 ~~~p~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~vtH~~~~~~~-~d~i~~l~~G~i 596 (1077)
+.+|+++||||||++||+++++.+.+.|+++. +++|+|++||+++.+.. ||++++|++|++
T Consensus 120 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~d~v~~l~~G~i 182 (182)
T cd03215 120 ARDPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVLLISSELDELLGLCDRILVMYEGRI 182 (182)
T ss_pred ccCCCEEEECCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEecCCcC
Confidence 99999999999999999999999999998874 47999999999998876 999999999974
|
The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. |
| >PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-35 Score=361.14 Aligned_cols=385 Identities=15% Similarity=0.196 Sum_probs=303.9
Q ss_pred HHHHHhhcccchHHHHHHHHHHHHHhhHHhHHHHHHHHHHHhhccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001438 684 AIKLYSMVRPDWTYGVCGTICAIIAGAQMPLFALGVSQALVAYYMDWDTTQREVKKITILFCCAAVITVIVHAIEHLSFG 763 (1077)
Q Consensus 684 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 763 (1077)
.+++.++.++++.++....+++++..+..+..++.+..+++..... .......++++++.++..+..++......
T Consensus 7 ~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~iid~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (588)
T PRK13657 7 YARVLQYLGAEKRLGILLAVANVLLAAATFAEPILFGRIIDAISGK-----GDIFPLLAAWAGFGLFNIIAGVLVARHAD 81 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-----ccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666677766666666666666677777777777654321 11111122223333333333333333334
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCccccccccCCchhHHHHHhhcHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 001438 764 IMGERLTLRVREKMFSAILSNEIGWFDEMDNSSSILASRLESDATLLRTIVVDRSTILIQNFGLVTASFVIAFILNWRIT 843 (1077)
Q Consensus 764 ~~~~~~~~~Lr~~l~~~llr~p~~FFD~~~~~~G~IlnR~s~D~~~i~~~l~~~l~~~~~~~~~~~~~i~i~~~~~w~l~ 843 (1077)
+...+...+++.++|+++++.|.++|++ .++|++++|+++|++.+...+...+..++..++..++.++++++.+|.++
T Consensus 82 ~~~~~~~~~l~~~l~~~l~~~~~~~~~~--~~~g~~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 159 (588)
T PRK13657 82 RLAHRRRLAVLTEYFERIIQLPLAWHSQ--RGSGRALHTLLRGTDALFGLWLEFMREHLATLVALVVLLPLALFMNWRLS 159 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCHHHHCc--CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555556669999999999999995 89999999999999999988888888888888888888888899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhHHHHHHHcchHHHHHhcchHHHHHHHHHHhhhhhHHHHHHHHHH
Q 001438 844 LVVVATYPLIISGHISEKLFFQGYGGNLSKAYLKANMLAAEAVSNIRTVAAFCSEDKVLELYSRELVEPSKRSFIRGQIA 923 (1077)
Q Consensus 844 l~~l~~~Pl~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Etl~Gi~tIrAf~~e~~~~~~f~~~~~~~~~~~~~~~~~~ 923 (1077)
+++++++|+.++......+..+....+.++...+..+.+.|+++|+++||+|+.|+++.++|.+..++..+...+.....
T Consensus 160 l~~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (588)
T PRK13657 160 LVLVVLGIVYTLITTLVMRKTKDGQAAVEEHYHDLFAHVSDAIGNVSVVQSYNRIEAETQALRDIADNLLAAQMPVLSWW 239 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999888887776666666666666777778888889999999999999999999999999999998888877777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHcCCCCc
Q 001438 924 GIFYGISQFFIFSSYGLALWYGSVLMGKELASFKSVMKSFMVLIVTALAMGETLALVPDLLKGNQMAASVFEVLDRKTQV 1003 (1077)
Q Consensus 924 ~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~l~~~~~~ 1003 (1077)
+....+.+........+++++|+.++..|.++++.++++..+......++..+......+..+..+.+|+.++++.+++.
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~~~a~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~~~~~ 319 (588)
T PRK13657 240 ALASVLNRAASTITMLAILVLGAALVQKGQLRVGEVVAFVGFATLLIGRLDQVVAFINQVFMAAPKLEEFFEVEDAVPDV 319 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccc
Confidence 77777777777788888999999999999999999999988888888899999999999999999999999999875543
Q ss_pred cCCCC-cccccccccEEEeeeeeeCCCCCcccccccceeeeeCCCEEEEECCCCCCHHHHHHHHhhccCCCCCCC
Q 001438 1004 IGDIG-EELTNVEGTIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKA 1077 (1077)
Q Consensus 1004 ~~~~~-~~~~~~~G~I~f~nVsf~Y~~~~~~~VLk~vsl~I~~GekVaIVGrTGsGKSTLi~lL~Rfyd~~~G~i 1077 (1077)
+.... .+.++.+|.|+|+||+|+||++ .++|+|+||+|+|||++||||+||||||||+++|.|+|+|++|+|
T Consensus 320 ~~~~~~~~~~~~~~~I~~~~vsf~y~~~--~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I 392 (588)
T PRK13657 320 RDPPGAIDLGRVKGAVEFDDVSFSYDNS--RQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRI 392 (588)
T ss_pred CCCCCCCCcCCCCCeEEEEEEEEEeCCC--CceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEE
Confidence 22111 1112345789999999999853 358999999999999999999999999999999999999999975
|
|
| >PRK10261 glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-38 Score=384.84 Aligned_cols=228 Identities=28% Similarity=0.446 Sum_probs=185.8
Q ss_pred cEEEEeEEEEcCCCC--------CcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCC
Q 001438 381 HIEFKDVSFCYPSRP--------DVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLD 452 (1077)
Q Consensus 381 ~i~~~~v~~~y~~~~--------~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~ 452 (1077)
.++++|+++.|+.+. ...+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+
T Consensus 313 ~L~~~~l~~~y~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p~~G~I~~~g~~i~~~~ 392 (623)
T PRK10261 313 ILQVRNLVTRFPLRSGLLNRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTLS 392 (623)
T ss_pred eEEEeeeEEEEcCCCccccccCCceEEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCcEEEECCEECCcCC
Confidence 589999999996311 235899999999999999999999999999999999999999999999999998765
Q ss_pred HH---HHhhheeEEccCCC--cccc-cHHHHHhcCCC--C-CCHHHHHHHHHHHhHHHHHhcCccchh-hhhcCCCCCCC
Q 001438 453 LK---WLRQQIGLVNQEPA--LFAT-TIRENILYGKD--D-ATMEEITRAAKLSEAMSFISNLPERFE-TQVGERGIQLS 522 (1077)
Q Consensus 453 ~~---~~r~~i~~v~Q~~~--lf~~-ti~~ni~~~~~--~-~~~~~~~~~~~~~~~~~~i~~l~~g~~-t~~~~~g~~LS 522 (1077)
.. .+|++|+||+|+|. +++. |+.||+.++.. . ...++.. .+..+..+ .+ |++ ........+||
T Consensus 393 ~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~--~~~~~~L~---~~--gL~~~~~~~~~~~LS 465 (623)
T PRK10261 393 PGKLQALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRVHGLLPGKAAA--ARVAWLLE---RV--GLLPEHAWRYPHEFS 465 (623)
T ss_pred HHHHHHhcCCeEEEecCchhhcCCCCCHHHHHHHHHHHcCCCCHHHHH--HHHHHHHH---Hc--CCCHHHhhCCcccCC
Confidence 43 35678999999983 6654 99999976421 1 1111111 11112222 22 332 23456677999
Q ss_pred hHHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh--CCCeEEEEccCchhHhh-cCEEEEEECCEEEEe
Q 001438 523 GGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVM--VGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKT 599 (1077)
Q Consensus 523 gGqkqri~lARal~~~p~illlDEpts~lD~~~~~~i~~~l~~~~--~~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~ 599 (1077)
||||||++|||||+.+|++|||||||++||+.+...+.+.|+++. .|.|+|+|||+++.+.. ||+|++|++|+|++.
T Consensus 466 gGqrQRv~iAraL~~~p~llllDEPts~LD~~~~~~i~~ll~~l~~~~g~tvi~isHdl~~v~~~~dri~vl~~G~iv~~ 545 (623)
T PRK10261 466 GGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIAYLFISHDMAVVERISHRVAVMYLGQIVEI 545 (623)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEe
Confidence 999999999999999999999999999999999999999998874 37999999999999875 999999999999999
Q ss_pred cChhHHhcCCCchHHH
Q 001438 600 GSHEELISNPNSAYAA 615 (1077)
Q Consensus 600 g~~~~l~~~~~~~~~~ 615 (1077)
|+++++..++...|.+
T Consensus 546 g~~~~i~~~p~~~~~~ 561 (623)
T PRK10261 546 GPRRAVFENPQHPYTR 561 (623)
T ss_pred cCHHHHhcCCCCHHHH
Confidence 9999998776666755
|
|
| >TIGR02770 nickel_nikD nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-38 Score=339.29 Aligned_cols=210 Identities=31% Similarity=0.476 Sum_probs=167.1
Q ss_pred cccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCC----CccEEEECCeeCCCCCHHHHhhheeEEccCCC-cc-c-
Q 001438 399 IFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEP----LSGEILLDGNNIKGLDLKWLRQQIGLVNQEPA-LF-A- 471 (1077)
Q Consensus 399 ~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~----~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~-lf-~- 471 (1077)
+++|+||++++||+++|+||||||||||+++|+|+++| ++|+|.++|+++... +..++.++|++|++. .| +
T Consensus 1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~--~~~~~~i~~~~q~~~~~~~~~ 78 (230)
T TIGR02770 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPL--SIRGRHIATIMQNPRTAFNPL 78 (230)
T ss_pred CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhh--hhhhheeEEEecCchhhcCcc
Confidence 47899999999999999999999999999999999999 899999999998654 223457999999995 34 3
Q ss_pred ccHHHHHhcCCCC--CCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHHhccCCCEEEEeCcCC
Q 001438 472 TTIRENILYGKDD--ATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATS 549 (1077)
Q Consensus 472 ~ti~~ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~~~p~illlDEpts 549 (1077)
.|+.||+.+.... ...++.. .+.....+.+ .++++ ++.....+.+||||||||++||||++++|+++||||||+
T Consensus 79 ~t~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~-~l~~~-~~~~~~~~~~LS~G~~qrv~laral~~~p~vllLDEPt~ 154 (230)
T TIGR02770 79 FTMGNHAIETLRSLGKLSKQAR--ALILEALEAV-GLPDP-EEVLKKYPFQLSGGMLQRVMIALALLLEPPFLIADEPTT 154 (230)
T ss_pred cCHHHHHHHHHHHcCccHHHHH--HHHHHHHHHc-CCCch-HHHHhCChhhcCHHHHHHHHHHHHHhcCCCEEEEcCCcc
Confidence 4999998653211 1111111 1111222221 23322 245567788999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHhC--CCeEEEEccCchhHhh-cCEEEEEECCEEEEecChhHHhcCCCchHH
Q 001438 550 ALDAESENSVQEALDRVMV--GRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELISNPNSAYA 614 (1077)
Q Consensus 550 ~lD~~~~~~i~~~l~~~~~--~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~ 614 (1077)
+||+.+.+.+.+.|+++.+ ++|+|++||+++.+.. ||++++|++|++++.|+++++...+...|.
T Consensus 155 ~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~~~~~ 222 (230)
T TIGR02770 155 DLDVVNQARVLKLLRELRQLFGTGILLITHDLGVVARIADEVAVMDDGRIVERGTVKEIFYNPKHETT 222 (230)
T ss_pred ccCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhCcCCHHH
Confidence 9999999999999998753 7899999999999864 999999999999999999999865444444
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous. |
| >CHL00131 ycf16 sulfate ABC transporter protein; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-38 Score=342.09 Aligned_cols=216 Identities=25% Similarity=0.376 Sum_probs=175.4
Q ss_pred cEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcc--cCCCccEEEECCeeCCCCCHHHHhh
Q 001438 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERF--YEPLSGEILLDGNNIKGLDLKWLRQ 458 (1077)
Q Consensus 381 ~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~--~~~~~G~i~~~g~~~~~~~~~~~r~ 458 (1077)
.++++|++++|++ ..+|+|+||++++||+++|+||||||||||+++|+|+ ++|++|+|.++|+++...+....++
T Consensus 7 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~ 83 (252)
T CHL00131 7 ILEIKNLHASVNE---NEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEPEERAH 83 (252)
T ss_pred eEEEEeEEEEeCC---EEeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEcccCChhhhhe
Confidence 5899999999973 3589999999999999999999999999999999998 6899999999999998877665554
Q ss_pred -heeEEccCCCcccc-cHHHHHhcCCCC---------CCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCC-CCChHHH
Q 001438 459 -QIGLVNQEPALFAT-TIRENILYGKDD---------ATMEEITRAAKLSEAMSFISNLPERFETQVGERGI-QLSGGQK 526 (1077)
Q Consensus 459 -~i~~v~Q~~~lf~~-ti~~ni~~~~~~---------~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~-~LSgGqk 526 (1077)
.++|++|++.++++ |+.+|+.++... ....+.. .+.....+.+ .++ ++..+.... +||||||
T Consensus 84 ~~~~~~~q~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~-~l~---~~~~~~~~~~~LSgG~~ 157 (252)
T CHL00131 84 LGIFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFL--EIINEKLKLV-GMD---PSFLSRNVNEGFSGGEK 157 (252)
T ss_pred eeEEEEeccccccccccHHHHHHHhhhhhhcccccccccHHHHH--HHHHHHHHHc-CCc---hhhhccccccCCCHHHH
Confidence 58999999999986 899998764210 0111111 1111222222 222 123444444 5999999
Q ss_pred HHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCeEEEEccCchhHhh--cCEEEEEECCEEEEecChh
Q 001438 527 QRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLSTIRN--ADVIAVVQGRKIVKTGSHE 603 (1077)
Q Consensus 527 qri~lARal~~~p~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~vtH~~~~~~~--~d~i~~l~~G~i~~~g~~~ 603 (1077)
||++||||++.+|+++||||||++||+.+.+.+.+.|+++. +++|+|++||+++.+.. ||++++|++|++++.|+++
T Consensus 158 qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~~tH~~~~~~~~~~d~i~~l~~G~i~~~~~~~ 237 (252)
T CHL00131 158 KRNEILQMALLDSELAILDETDSGLDIDALKIIAEGINKLMTSENSIILITHYQRLLDYIKPDYVHVMQNGKIIKTGDAE 237 (252)
T ss_pred HHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhhhCCEEEEEeCCEEEEecChh
Confidence 99999999999999999999999999999999999998875 58999999999999874 8999999999999999987
Q ss_pred HH
Q 001438 604 EL 605 (1077)
Q Consensus 604 ~l 605 (1077)
++
T Consensus 238 ~~ 239 (252)
T CHL00131 238 LA 239 (252)
T ss_pred hh
Confidence 43
|
|
| >TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-38 Score=336.19 Aligned_cols=198 Identities=32% Similarity=0.516 Sum_probs=160.8
Q ss_pred EEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCH----HHHhhh
Q 001438 384 FKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDL----KWLRQQ 459 (1077)
Q Consensus 384 ~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~----~~~r~~ 459 (1077)
++|+++.|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++..+.. ...++.
T Consensus 1 i~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ 77 (206)
T TIGR03608 1 LKNISKKFGD---KIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGKETPPLNSKKASKFRREK 77 (206)
T ss_pred CcceEEEECC---EEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccchhhHHHHHHhC
Confidence 4689999963 358999999999999999999999999999999999999999999999999765432 235678
Q ss_pred eeEEccCCCccc-ccHHHHHhcCCCC--CCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHHhc
Q 001438 460 IGLVNQEPALFA-TTIRENILYGKDD--ATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIV 536 (1077)
Q Consensus 460 i~~v~Q~~~lf~-~ti~~ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~ 536 (1077)
++|++|++.+|+ .|++||+.++... ...++..+ +.... ++.+ |++........+||||||||++|||||+
T Consensus 78 i~~~~q~~~~~~~~t~~e~~~~~~~~~~~~~~~~~~--~~~~~---l~~~--~l~~~~~~~~~~lS~G~~qr~~laral~ 150 (206)
T TIGR03608 78 LGYLFQNFALIENETVEENLDLGLKYKKLSKKEKRE--KKKEA---LEKV--GLNLKLKQKIYELSGGEQQRVALARAIL 150 (206)
T ss_pred eeEEecchhhccCCcHHHHHHHHHHhcCCCHHHHHH--HHHHH---HHHc--CchhhhcCChhhCCHHHHHHHHHHHHHH
Confidence 999999999987 5999999875321 11111111 11111 2222 2333445566789999999999999999
Q ss_pred cCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCeEEEEccCchhHhhcCEEEEE
Q 001438 537 KNPSILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLSTIRNADVIAVV 591 (1077)
Q Consensus 537 ~~p~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~vtH~~~~~~~~d~i~~l 591 (1077)
.+|+++||||||++||+.+.+.+.+.|+++. +++|+|++||+++.+..||+|++|
T Consensus 151 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~d~i~~l 206 (206)
T TIGR03608 151 KDPPLILADEPTGSLDPKNRDEVLDLLLELNDEGKTIIIVTHDPEVAKQADRVIEL 206 (206)
T ss_pred cCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhhcCEEEeC
Confidence 9999999999999999999999999998875 489999999999988789999875
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins. |
| >PRK09580 sufC cysteine desulfurase ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-38 Score=341.87 Aligned_cols=215 Identities=23% Similarity=0.337 Sum_probs=170.0
Q ss_pred EEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhccc--CCCccEEEECCeeCCCCCHHHHh-h
Q 001438 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFY--EPLSGEILLDGNNIKGLDLKWLR-Q 458 (1077)
Q Consensus 382 i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~--~~~~G~i~~~g~~~~~~~~~~~r-~ 458 (1077)
|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|++ +|++|+|.++|+++...+....+ +
T Consensus 2 i~~~nl~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 78 (248)
T PRK09580 2 LSIKDLHVSVED---KAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSPEDRAGE 78 (248)
T ss_pred eEEEEEEEEeCC---eeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCccccCCHHHHhhc
Confidence 789999999974 35899999999999999999999999999999999994 69999999999999877766554 5
Q ss_pred heeEEccCCCcccc-cHHHHHhcCCCC---C------CHHHHHHHHHHHhHHHHHhcCccchhhhhcCCC-CCCChHHHH
Q 001438 459 QIGLVNQEPALFAT-TIRENILYGKDD---A------TMEEITRAAKLSEAMSFISNLPERFETQVGERG-IQLSGGQKQ 527 (1077)
Q Consensus 459 ~i~~v~Q~~~lf~~-ti~~ni~~~~~~---~------~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g-~~LSgGqkq 527 (1077)
.++|++|++.+++. |..+++.+.... . ...+..+ ......+. ..+|+++.+. .. .+|||||||
T Consensus 79 ~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~-~~l~~~~~~~---~~~~~LS~G~~q 152 (248)
T PRK09580 79 GIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQD--LMEEKIAL-LKMPEDLLTR---SVNVGFSGGEKK 152 (248)
T ss_pred ceEEEecCchhccchhHHHHHHHhhhhhhcccccccchHHHHHH--HHHHHHHH-cCCChhhccc---CCCCCCCHHHHH
Confidence 69999999987765 555554321110 0 0001111 11111121 1344443332 23 379999999
Q ss_pred HHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCeEEEEccCchhHhh--cCEEEEEECCEEEEecChhH
Q 001438 528 RIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLSTIRN--ADVIAVVQGRKIVKTGSHEE 604 (1077)
Q Consensus 528 ri~lARal~~~p~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~vtH~~~~~~~--~d~i~~l~~G~i~~~g~~~~ 604 (1077)
|++||||++++|+++||||||++||+.+.+.+.+.|+++. +++|+|++||+++.+.. ||+|++|++|++++.|++++
T Consensus 153 rv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~l~~~~~tiii~sH~~~~~~~~~~d~i~~l~~g~i~~~g~~~~ 232 (248)
T PRK09580 153 RNDILQMAVLEPELCILDESDSGLDIDALKIVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSGDFTL 232 (248)
T ss_pred HHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhhhCCEEEEEECCeEEEeCCHHH
Confidence 9999999999999999999999999999999999998875 47899999999999876 89999999999999999875
Q ss_pred H
Q 001438 605 L 605 (1077)
Q Consensus 605 l 605 (1077)
.
T Consensus 233 ~ 233 (248)
T PRK09580 233 V 233 (248)
T ss_pred H
Confidence 4
|
|
| >PRK15056 manganese/iron transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-38 Score=345.25 Aligned_cols=214 Identities=24% Similarity=0.414 Sum_probs=170.2
Q ss_pred cEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHHHhhhe
Q 001438 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQI 460 (1077)
Q Consensus 381 ~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i 460 (1077)
.++++|++++|++. .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++.. ...++.+
T Consensus 6 ~l~~~~l~~~~~~~--~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~---~~~~~~i 80 (272)
T PRK15056 6 GIVVNDVTVTWRNG--HTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQ---ALQKNLV 80 (272)
T ss_pred eEEEEeEEEEecCC--cEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEhHH---hhccceE
Confidence 58999999999632 358999999999999999999999999999999999999999999999998742 1123469
Q ss_pred eEEccCCCc---ccccHHHHHhcCCCC------CCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHH
Q 001438 461 GLVNQEPAL---FATTIRENILYGKDD------ATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAI 531 (1077)
Q Consensus 461 ~~v~Q~~~l---f~~ti~~ni~~~~~~------~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~l 531 (1077)
+|+||++.+ +..++++|+.++... ....+..+. .....+ .+ |+.........+||||||||++|
T Consensus 81 ~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~--~~~~l~---~~--gl~~~~~~~~~~LSgG~~qrv~l 153 (272)
T PRK15056 81 AYVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQI--VTAALA---RV--DMVEFRHRQIGELSGGQKKRVFL 153 (272)
T ss_pred EEeccccccccCCCcchhhheecccccccccccCCCHHHHHH--HHHHHH---Hc--CChhHhcCCcccCCHHHHHHHHH
Confidence 999999865 455899998764210 000111111 111111 11 22223345567899999999999
Q ss_pred HHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCeEEEEccCchhHhh-cCEEEEEECCEEEEecChhHHhc
Q 001438 532 SRAIVKNPSILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELIS 607 (1077)
Q Consensus 532 ARal~~~p~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~ 607 (1077)
|||++.+|+++||||||++||+.+.+.+.+.|+++. +++|+|++||+++.+.. ||+++++ +|++++.|+++++..
T Consensus 154 araL~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~g~tviivsH~~~~~~~~~d~v~~~-~G~i~~~g~~~~~~~ 230 (272)
T PRK15056 154 ARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTHNLGSVTEFCDYTVMV-KGTVLASGPTETTFT 230 (272)
T ss_pred HHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEE-CCEEEeecCHHhccC
Confidence 999999999999999999999999999999998875 48999999999998754 9999777 899999999998753
|
|
| >PRK03695 vitamin B12-transporter ATPase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-37 Score=338.24 Aligned_cols=210 Identities=23% Similarity=0.406 Sum_probs=173.1
Q ss_pred EEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHHHhhheeE
Q 001438 383 EFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIGL 462 (1077)
Q Consensus 383 ~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~ 462 (1077)
+++|+++. .+|+|+||++++||+++|+||||||||||+++|+|++++ +|+|.++|+++...+...+++.++|
T Consensus 2 ~~~~l~~~-------~~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~~-~G~i~~~g~~i~~~~~~~~~~~i~~ 73 (248)
T PRK03695 2 QLNDVAVS-------TRLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLPG-SGSIQFAGQPLEAWSAAELARHRAY 73 (248)
T ss_pred cccccchh-------ceecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCC-CeEEEECCEecCcCCHHHHhhheEE
Confidence 46777774 168999999999999999999999999999999999865 9999999999988887788888999
Q ss_pred EccCCCcc-cccHHHHHhcCCCCC-CHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHHhcc---
Q 001438 463 VNQEPALF-ATTIRENILYGKDDA-TMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVK--- 537 (1077)
Q Consensus 463 v~Q~~~lf-~~ti~~ni~~~~~~~-~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~~--- 537 (1077)
+||++.++ ..|++||+.++.... ..++..+ + ..+.++.+ |++.........||||||||++||||++.
T Consensus 74 v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~--~---~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~la~al~~~~~ 146 (248)
T PRK03695 74 LSQQQTPPFAMPVFQYLTLHQPDKTRTEAVAS--A---LNEVAEAL--GLDDKLGRSVNQLSGGEWQRVRLAAVVLQVWP 146 (248)
T ss_pred ecccCccCCCccHHHHHHhcCccCCCcHHHHH--H---HHHHHHHc--CCHhHhcCCcccCCHHHHHHHHHHHHHhcccc
Confidence 99998654 569999999864321 1111111 1 11222222 34444566778999999999999999997
Q ss_pred ----CCCEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCeEEEEccCchhHh-hcCEEEEEECCEEEEecChhHHhc
Q 001438 538 ----NPSILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLSTIR-NADVIAVVQGRKIVKTGSHEELIS 607 (1077)
Q Consensus 538 ----~p~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~vtH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~ 607 (1077)
+|+++||||||++||+.+.+.+.+.|+++. +++|+|++||+++.+. .||++++|++|++++.|+++++..
T Consensus 147 ~~~p~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 222 (248)
T PRK03695 147 DINPAGQLLLLDEPMNSLDVAQQAALDRLLSELCQQGIAVVMSSHDLNHTLRHADRVWLLKQGKLLASGRRDEVLT 222 (248)
T ss_pred ccCCCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHhC
Confidence 679999999999999999999999998875 5899999999999775 599999999999999999988864
|
|
| >TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-35 Score=353.70 Aligned_cols=372 Identities=16% Similarity=0.172 Sum_probs=297.9
Q ss_pred cchHHHHHHHHHHHHHhhHHhHHHHHHHHHHHhhccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001438 693 PDWTYGVCGTICAIIAGAQMPLFALGVSQALVAYYMDWDTTQREVKKITILFCCAAVITVIVHAIEHLSFGIMGERLTLR 772 (1077)
Q Consensus 693 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 772 (1077)
++++.+...++++++......+.++.+..+++....... ......+.++++++.++..++.+++.++....+.++..+
T Consensus 3 ~~k~~~~~~~~~~~~~~~~~l~~p~~~~~iid~~~~~~~--~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (544)
T TIGR01842 3 KNKSTFIIVGLFSFVINILMLAPPLYMLQVYDRVLTSGS--VPTLLMLTVLALGLYLFLGLLDALRSFVLVRIGEKLDGA 80 (544)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCc--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555566666666666777888888875542111 112223344455556667778888999999999999999
Q ss_pred HHHHHHHHHHcCCccccccccCCchhHHHHHhhcHHHHHHHHHh-hHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 001438 773 VREKMFSAILSNEIGWFDEMDNSSSILASRLESDATLLRTIVVD-RSTILIQNFGLVTASFVIAFILNWRITLVVVATYP 851 (1077)
Q Consensus 773 Lr~~l~~~llr~p~~FFD~~~~~~G~IlnR~s~D~~~i~~~l~~-~l~~~~~~~~~~~~~i~i~~~~~w~l~l~~l~~~P 851 (1077)
+|.++|+++++.|+..+ |..++++++|++.+++.+.. .+..++..++.++ .++++++++|++++++++..|
T Consensus 81 lr~~~~~~ll~~~~~~~-------~~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~l~li~l~~~~ 152 (544)
T TIGR01842 81 LNQPIFAASFSATLRRG-------KIDGLQALRDLDQLRQFLTGPGLFAFFDAPWMPI-YLLVCFLLHPWIGILALGGAV 152 (544)
T ss_pred HHHHHHHHHhcCcccCc-------cchHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-HHHHHHHHhhHHHHHHHHHHH
Confidence 99999999999998432 45789999999999988776 4555555555544 446788899999999888888
Q ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHhHHHHHHHcchHHHHHhcchHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH
Q 001438 852 LIISGHISEKLFFQGYGGNLSKAYLKANMLAAEAVSNIRTVAAFCSEDKVLELYSRELVEPSKRSFIRGQIAGIFYGISQ 931 (1077)
Q Consensus 852 l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Etl~Gi~tIrAf~~e~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~ 931 (1077)
++++...+..+..++..++.++...+....+.|+++|+++||+|+.|+++.++|.+..++..+...+.....+.......
T Consensus 153 l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (544)
T TIGR01842 153 VLVGLALLNNRATKKPLKEATEASIRANNLADSALRNAEVIEAMGMMGNLTKRWGRFHSKYLSAQSAASDRAGMLSNLSK 232 (544)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHhcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 87766656666666666677778888888999999999999999999999999999999888887777777777777777
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHcCCCCccCCCCccc
Q 001438 932 FFIFSSYGLALWYGSVLMGKELASFKSVMKSFMVLIVTALAMGETLALVPDLLKGNQMAASVFEVLDRKTQVIGDIGEEL 1011 (1077)
Q Consensus 932 ~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~ 1011 (1077)
.+......+++++|+.++..|.++++.++++..+......|+..+......++.+..+.+|+.++++.+++..+. .+.
T Consensus 233 ~~~~~~~~~~~~~g~~l~~~g~it~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~--~~~ 310 (544)
T TIGR01842 233 YFRIVLQSLVLGLGAYLAIDGEITPGMMIAGSILVGRALAPIDGAIGGWKQFSGARQAYKRLNELLANYPSRDPA--MPL 310 (544)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccCC--CCC
Confidence 777777788889999999999999999999999988889999999999999999999999999999876543211 112
Q ss_pred ccccccEEEeeeeeeCCCCCcccccccceeeeeCCCEEEEECCCCCCHHHHHHHHhhccCCCCCCC
Q 001438 1012 TNVEGTIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKA 1077 (1077)
Q Consensus 1012 ~~~~G~I~f~nVsf~Y~~~~~~~VLk~vsl~I~~GekVaIVGrTGsGKSTLi~lL~Rfyd~~~G~i 1077 (1077)
++.+|.|+|+||+|+||+. +.++|+|+||+|+|||++|||||||||||||+++|.|+|+|++|+|
T Consensus 311 ~~~~~~i~~~~v~~~y~~~-~~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i 375 (544)
T TIGR01842 311 PEPEGHLSVENVTIVPPGG-KKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSV 375 (544)
T ss_pred CCCCCeEEEEEEEEEcCCC-CccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceE
Confidence 2345789999999999754 2458999999999999999999999999999999999999999975
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-38 Score=324.32 Aligned_cols=177 Identities=37% Similarity=0.581 Sum_probs=155.5
Q ss_pred EEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHHHhhheeE
Q 001438 383 EFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIGL 462 (1077)
Q Consensus 383 ~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~ 462 (1077)
+++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+...+++.++|
T Consensus 1 ~~~~l~~~~~~---~~~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~i~~ 77 (180)
T cd03214 1 EVENLSVGYGG---RTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLSPKELARKIAY 77 (180)
T ss_pred CeeEEEEEECC---eeeEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCcCCHHHHHHHHhH
Confidence 47899999964 358999999999999999999999999999999999999999999999999988888888888999
Q ss_pred EccCCCcccccHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHHhccCCCEE
Q 001438 463 VNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSIL 542 (1077)
Q Consensus 463 v~Q~~~lf~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~~~p~il 542 (1077)
++| +++..++ .......+.+||||||||++||||++.+|+++
T Consensus 78 ~~q---------------------------~l~~~gl-----------~~~~~~~~~~LS~G~~qrl~laral~~~p~ll 119 (180)
T cd03214 78 VPQ---------------------------ALELLGL-----------AHLADRPFNELSGGERQRVLLARALAQEPPIL 119 (180)
T ss_pred HHH---------------------------HHHHcCC-----------HhHhcCCcccCCHHHHHHHHHHHHHhcCCCEE
Confidence 999 1222121 12233456789999999999999999999999
Q ss_pred EEeCcCCCCCHHHHHHHHHHHHHHhC--CCeEEEEccCchhHh-hcCEEEEEECCEEEEec
Q 001438 543 LLDEATSALDAESENSVQEALDRVMV--GRTTVVVAHRLSTIR-NADVIAVVQGRKIVKTG 600 (1077)
Q Consensus 543 llDEpts~lD~~~~~~i~~~l~~~~~--~~t~i~vtH~~~~~~-~~d~i~~l~~G~i~~~g 600 (1077)
||||||++||+++.+.+.+.|+++.+ ++|+|++||+++.+. .||++++|++|++++.|
T Consensus 120 llDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~~~~l~~g~i~~~~ 180 (180)
T cd03214 120 LLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLAARYADRVILLKDGRIVAQG 180 (180)
T ss_pred EEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEecC
Confidence 99999999999999999999988754 789999999999985 59999999999998654
|
Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. |
| >cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-38 Score=338.85 Aligned_cols=196 Identities=26% Similarity=0.405 Sum_probs=158.4
Q ss_pred cccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHHHhhheeEEc-cCCCccc-ccH
Q 001438 397 VAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIGLVN-QEPALFA-TTI 474 (1077)
Q Consensus 397 ~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~-Q~~~lf~-~ti 474 (1077)
+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++... ...++++++|++ |++.++. .|+
T Consensus 34 ~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~-~~~~~~~i~~~~~~~~~~~~~~tv 112 (236)
T cd03267 34 VEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKR-RKKFLRRIGVVFGQKTQLWWDLPV 112 (236)
T ss_pred eeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccc-chhhcccEEEEcCCccccCCCCcH
Confidence 4689999999999999999999999999999999999999999999999987543 345677899997 5677764 599
Q ss_pred HHHHhcCCC--CCCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHHhccCCCEEEEeCcCCCCC
Q 001438 475 RENILYGKD--DATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALD 552 (1077)
Q Consensus 475 ~~ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~~~p~illlDEpts~lD 552 (1077)
+||+.+... ....++..+.+ ..+.+.+ .+++. ......+||||||||++||||++.+|+++||||||++||
T Consensus 113 ~e~l~~~~~~~~~~~~~~~~~~--~~~l~~~-gl~~~----~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD 185 (236)
T cd03267 113 IDSFYLLAAIYDLPPARFKKRL--DELSELL-DLEEL----LDTPVRQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLD 185 (236)
T ss_pred HHHHHHHHHHcCCCHHHHHHHH--HHHHHHc-CChhH----hcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCC
Confidence 999976431 12223222211 1222222 23333 334456899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHh--CCCeEEEEccCchhHhh-cCEEEEEECCEEEEec
Q 001438 553 AESENSVQEALDRVM--VGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTG 600 (1077)
Q Consensus 553 ~~~~~~i~~~l~~~~--~~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~g 600 (1077)
+.+.+.+.+.|+++. .++|+|++||+++.+.. ||++++|++|++++.|
T Consensus 186 ~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g 236 (236)
T cd03267 186 VVAQENIRNFLKEYNRERGTTVLLTSHYMKDIEALARRVLVIDKGRLLYDG 236 (236)
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHHhCCEEEEEeCCEEEecC
Confidence 999999999999874 37899999999998865 9999999999998765
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein. |
| >COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-38 Score=303.47 Aligned_cols=210 Identities=29% Similarity=0.495 Sum_probs=169.7
Q ss_pred EEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHHHhhhee
Q 001438 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIG 461 (1077)
Q Consensus 382 i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 461 (1077)
+..++++.+|++.+ ..+|+|+|++|.+||+++++||||||||||+|+++|+++|..|+|.+||.+|..-.. .=|
T Consensus 4 l~~~~~sl~y~g~~-~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P~~G~i~l~~r~i~gPga-----erg 77 (259)
T COG4525 4 LNVSHLSLSYEGKP-RSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRRIEGPGA-----ERG 77 (259)
T ss_pred eehhheEEecCCcc-hhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcCcccceEEECCEeccCCCc-----cce
Confidence 55678999998764 569999999999999999999999999999999999999999999999998875432 368
Q ss_pred EEccCCCcccc-cHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHHhccCCC
Q 001438 462 LVNQEPALFAT-TIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPS 540 (1077)
Q Consensus 462 ~v~Q~~~lf~~-ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~~~p~ 540 (1077)
.|+|++-|++- |+.||+.||......++..+.....+....+ |++..-.....+||||||||+.|||||..+|+
T Consensus 78 vVFQ~~~LlPWl~~~dNvafgL~l~Gi~k~~R~~~a~q~l~~V-----gL~~~~~~~i~qLSGGmrQRvGiARALa~eP~ 152 (259)
T COG4525 78 VVFQNEALLPWLNVIDNVAFGLQLRGIEKAQRREIAHQMLALV-----GLEGAEHKYIWQLSGGMRQRVGIARALAVEPQ 152 (259)
T ss_pred eEeccCccchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHh-----CcccccccceEeecchHHHHHHHHHHhhcCcc
Confidence 99999999986 9999999997432222222211111111111 22222234567899999999999999999999
Q ss_pred EEEEeCcCCCCCHHHHHHHHHHHHHHh--CCCeEEEEccCchhHh-hcCEEEEEE--CCEEEEecCh
Q 001438 541 ILLLDEATSALDAESENSVQEALDRVM--VGRTTVVVAHRLSTIR-NADVIAVVQ--GRKIVKTGSH 602 (1077)
Q Consensus 541 illlDEpts~lD~~~~~~i~~~l~~~~--~~~t~i~vtH~~~~~~-~~d~i~~l~--~G~i~~~g~~ 602 (1077)
.|+||||++|||.-+++++++.|.++. .|+.+++|||+++..- -|++++||+ .|+|++.-++
T Consensus 153 ~LlLDEPfgAlDa~tRe~mQelLldlw~~tgk~~lliTH~ieEAlflatrLvvlsp~pgRvv~~~~~ 219 (259)
T COG4525 153 LLLLDEPFGALDALTREQMQELLLDLWQETGKQVLLITHDIEEALFLATRLVVLSPGPGRVVERLPL 219 (259)
T ss_pred eEeecCchhhHHHHHHHHHHHHHHHHHHHhCCeEEEEeccHHHHHhhhheeEEecCCCceeeEecCC
Confidence 999999999999999999999998763 5899999999999865 499999997 4689886543
|
|
| >COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-38 Score=326.78 Aligned_cols=197 Identities=37% Similarity=0.539 Sum_probs=166.6
Q ss_pred cEEEEeEEEEcCCCC------CcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHH
Q 001438 381 HIEFKDVSFCYPSRP------DVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLK 454 (1077)
Q Consensus 381 ~i~~~~v~~~y~~~~------~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~ 454 (1077)
-++++|+++.|+... ...+++||||+|++||+++|||+|||||||+.++|+|+++|++|+|+++|+|+..++
T Consensus 4 ll~v~~l~k~f~~~~~~~~~~~v~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~i~~~~-- 81 (268)
T COG4608 4 LLEVKNLKKYFPVGKGFGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDITKLS-- 81 (268)
T ss_pred eEEEeccEEEEecccccCcccceEEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCcchhhcc--
Confidence 478999999997532 136899999999999999999999999999999999999999999999999877654
Q ss_pred HHhhheeEEccCCCcccccHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHH
Q 001438 455 WLRQQIGLVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRA 534 (1077)
Q Consensus 455 ~~r~~i~~v~Q~~~lf~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARa 534 (1077)
.....+++.+.++.++ ++. ......+.+|||||||||+||||
T Consensus 82 ----------------------------~~~~~~~v~elL~~Vg-------l~~---~~~~ryPhelSGGQrQRi~IARA 123 (268)
T COG4608 82 ----------------------------KEERRERVLELLEKVG-------LPE---EFLYRYPHELSGGQRQRIGIARA 123 (268)
T ss_pred ----------------------------hhHHHHHHHHHHHHhC-------CCH---HHhhcCCcccCchhhhhHHHHHH
Confidence 1111222333333222 222 13455677999999999999999
Q ss_pred hccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh--CCCeEEEEccCchhHhh-cCEEEEEECCEEEEecChhHHhcCCCc
Q 001438 535 IVKNPSILLLDEATSALDAESENSVQEALDRVM--VGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELISNPNS 611 (1077)
Q Consensus 535 l~~~p~illlDEpts~lD~~~~~~i~~~l~~~~--~~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~~~ 611 (1077)
|..+|+++++|||+|+||...+.++.+.+.++. .|-|.++|||+++.+++ ||||.||..|+|+|.|+.+++..++..
T Consensus 124 Lal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~vv~~isdri~VMy~G~iVE~g~~~~~~~~p~H 203 (268)
T COG4608 124 LALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLSVVRYISDRIAVMYLGKIVEIGPTEEVFSNPLH 203 (268)
T ss_pred HhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHHhhhhhcccEEEEecCceeEecCHHHHhhCCCC
Confidence 999999999999999999999999999998875 48999999999999987 999999999999999999999999999
Q ss_pred hHHHHH
Q 001438 612 AYAALV 617 (1077)
Q Consensus 612 ~~~~~~ 617 (1077)
.|.+..
T Consensus 204 pYTk~L 209 (268)
T COG4608 204 PYTKAL 209 (268)
T ss_pred HHHHHH
Confidence 998754
|
|
| >cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-37 Score=314.64 Aligned_cols=159 Identities=31% Similarity=0.561 Sum_probs=147.5
Q ss_pred EEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCH-HHHhhhe
Q 001438 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDL-KWLRQQI 460 (1077)
Q Consensus 382 i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~-~~~r~~i 460 (1077)
++++|++++|++ .++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+. +..++++
T Consensus 1 l~~~~l~~~~~~---~~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~~i 77 (163)
T cd03216 1 LELRGITKRFGG---VKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPRDARRAGI 77 (163)
T ss_pred CEEEEEEEEECC---eEEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCcCCHHHHHhcCe
Confidence 478999999974 359999999999999999999999999999999999999999999999999988765 3467789
Q ss_pred eEEccCCCcccccHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHHhccCCC
Q 001438 461 GLVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPS 540 (1077)
Q Consensus 461 ~~v~Q~~~lf~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~~~p~ 540 (1077)
+|++| ||||||||++||||++++|+
T Consensus 78 ~~~~q-------------------------------------------------------LS~G~~qrl~laral~~~p~ 102 (163)
T cd03216 78 AMVYQ-------------------------------------------------------LSVGERQMVEIARALARNAR 102 (163)
T ss_pred EEEEe-------------------------------------------------------cCHHHHHHHHHHHHHhcCCC
Confidence 99999 99999999999999999999
Q ss_pred EEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCeEEEEccCchhHhh-cCEEEEEECCEEEE
Q 001438 541 ILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVK 598 (1077)
Q Consensus 541 illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~ 598 (1077)
++||||||++||+++++.+.+.|+++. +++|+|++||+++.+.. ||++++|++|++++
T Consensus 103 illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~d~~~~l~~g~i~~ 162 (163)
T cd03216 103 LLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEVFEIADRVTVLRDGRVVG 162 (163)
T ss_pred EEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEe
Confidence 999999999999999999999998874 58999999999998765 99999999999875
|
The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. |
| >PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-37 Score=371.49 Aligned_cols=215 Identities=27% Similarity=0.459 Sum_probs=180.5
Q ss_pred cEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHHHh-hh
Q 001438 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLR-QQ 459 (1077)
Q Consensus 381 ~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r-~~ 459 (1077)
.|+++|++++|++ ..+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...++ +.
T Consensus 11 ~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 87 (510)
T PRK15439 11 LLCARSISKQYSG---VEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAHQLG 87 (510)
T ss_pred eEEEEeEEEEeCC---ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHhCC
Confidence 5999999999963 3589999999999999999999999999999999999999999999999999877766554 46
Q ss_pred eeEEccCCCcccc-cHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHHhccC
Q 001438 460 IGLVNQEPALFAT-TIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKN 538 (1077)
Q Consensus 460 i~~v~Q~~~lf~~-ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~~~ 538 (1077)
++|++|++.+++. |++||+.++.... ++..+. .....+.+ |++........+||||||||++|||||+.+
T Consensus 88 i~~v~q~~~~~~~~tv~e~l~~~~~~~--~~~~~~--~~~~l~~~-----~l~~~~~~~~~~LSgG~~qrv~la~aL~~~ 158 (510)
T PRK15439 88 IYLVPQEPLLFPNLSVKENILFGLPKR--QASMQK--MKQLLAAL-----GCQLDLDSSAGSLEVADRQIVEILRGLMRD 158 (510)
T ss_pred EEEEeccCccCCCCcHHHHhhcccccc--hHHHHH--HHHHHHHc-----CCCccccCChhhCCHHHHHHHHHHHHHHcC
Confidence 9999999998876 9999999875321 111111 11122222 222334456678999999999999999999
Q ss_pred CCEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCeEEEEccCchhHhh-cCEEEEEECCEEEEecChhHHhc
Q 001438 539 PSILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELIS 607 (1077)
Q Consensus 539 p~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~ 607 (1077)
|++|||||||++||+.+.+.+.+.|+++. +|+|+|++||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 159 p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 229 (510)
T PRK15439 159 SRILILDEPTASLTPAETERLFSRIRELLAQGVGIVFISHKLPEIRQLADRISVMRDGTIALSGKTADLST 229 (510)
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecChHHcCH
Confidence 99999999999999999999999998874 58999999999999865 99999999999999999988754
|
|
| >PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-37 Score=335.08 Aligned_cols=208 Identities=25% Similarity=0.428 Sum_probs=171.7
Q ss_pred cEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHHHhhhe
Q 001438 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQI 460 (1077)
Q Consensus 381 ~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i 460 (1077)
.++++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++| +..+
T Consensus 4 ~l~~~~l~~~~~~---~~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~~-----------~~~i 69 (251)
T PRK09544 4 LVSLENVSVSFGQ---RRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNG-----------KLRI 69 (251)
T ss_pred EEEEeceEEEECC---ceEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECC-----------ccCE
Confidence 4899999999974 3589999999999999999999999999999999999999999999987 2369
Q ss_pred eEEccCCCccc---ccHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHHhcc
Q 001438 461 GLVNQEPALFA---TTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVK 537 (1077)
Q Consensus 461 ~~v~Q~~~lf~---~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~~ 537 (1077)
+|+||++.++. .|+++|+.+.. ....+++.++++..++ ..........||||||||++||||++.
T Consensus 70 ~~v~q~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~l~~~gl-----------~~~~~~~~~~LSgGq~qrv~laral~~ 137 (251)
T PRK09544 70 GYVPQKLYLDTTLPLTVNRFLRLRP-GTKKEDILPALKRVQA-----------GHLIDAPMQKLSGGETQRVLLARALLN 137 (251)
T ss_pred EEeccccccccccChhHHHHHhccc-cccHHHHHHHHHHcCC-----------hHHHhCChhhCCHHHHHHHHHHHHHhc
Confidence 99999998764 48899986532 2233444444433332 222334567899999999999999999
Q ss_pred CCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCeEEEEccCchhHhh-cCEEEEEECCEEEEecChhHHhcCCCchHH
Q 001438 538 NPSILLLDEATSALDAESENSVQEALDRVMV--GRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELISNPNSAYA 614 (1077)
Q Consensus 538 ~p~illlDEpts~lD~~~~~~i~~~l~~~~~--~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~ 614 (1077)
+|+++||||||++||+.+.+.+.+.|+++.+ ++|+|++||+++.+.. ||+|++|++ ++++.|+++++.+ ...+.
T Consensus 138 ~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tiiivsH~~~~i~~~~d~i~~l~~-~i~~~g~~~~~~~--~~~~~ 214 (251)
T PRK09544 138 RPQLLVLDEPTQGVDVNGQVALYDLIDQLRRELDCAVLMVSHDLHLVMAKTDEVLCLNH-HICCSGTPEVVSL--HPEFI 214 (251)
T ss_pred CCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEECC-ceEeeCCHHHHhC--CHHHH
Confidence 9999999999999999999999999988743 7999999999999865 999999965 7999999999864 34444
Q ss_pred HHH
Q 001438 615 ALV 617 (1077)
Q Consensus 615 ~~~ 617 (1077)
+++
T Consensus 215 ~~~ 217 (251)
T PRK09544 215 SMF 217 (251)
T ss_pred HHh
Confidence 444
|
|
| >COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-38 Score=306.17 Aligned_cols=216 Identities=31% Similarity=0.515 Sum_probs=183.5
Q ss_pred EEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHHHhhhee
Q 001438 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIG 461 (1077)
Q Consensus 382 i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 461 (1077)
|+++||+++|.+ +.+++++|++|++|.+++++||||+|||||+.++.|+.++++|+|++||.++.+.+.+++.++++
T Consensus 2 I~i~nv~K~y~~---~~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~d~G~i~i~g~~~~~~~s~~LAk~lS 78 (252)
T COG4604 2 ITIENVSKSYGT---KVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITIDGLELTSTPSKELAKKLS 78 (252)
T ss_pred eeehhhhHhhCC---EEeeccceeeecCCceeEEECCCCccHHHHHHHHHHhccccCceEEEeeeecccCChHHHHHHHH
Confidence 688999999974 46999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEccCCCcccc-cHHHHHhcCCCCC-----CHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHHh
Q 001438 462 LVNQEPALFAT-TIRENILYGKDDA-----TMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAI 535 (1077)
Q Consensus 462 ~v~Q~~~lf~~-ti~~ni~~~~~~~-----~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal 535 (1077)
..-|+..+-.. ||||-+.||+-++ +.++-. ...++.++++ |.+ .-++.-.+||||||||.-+|..+
T Consensus 79 ILkQ~N~i~~rlTV~dLv~FGRfPYSqGRlt~eD~~---~I~~aieyl~-L~~----l~dryLd~LSGGQrQRAfIAMVl 150 (252)
T COG4604 79 ILKQENHINSRLTVRDLVGFGRFPYSQGRLTKEDRR---IINEAIEYLH-LED----LSDRYLDELSGGQRQRAFIAMVL 150 (252)
T ss_pred HHHhhchhhheeEHHHHhhcCCCcccCCCCchHHHH---HHHHHHHHhc-ccc----hHHHhHHhcccchhhhhhhheee
Confidence 99999988655 9999999997322 112111 1112223321 111 11222347999999999999999
Q ss_pred ccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh--CCCeEEEEccCchhHhh-cCEEEEEECCEEEEecChhHHhcC
Q 001438 536 VKNPSILLLDEATSALDAESENSVQEALDRVM--VGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELISN 608 (1077)
Q Consensus 536 ~~~p~illlDEpts~lD~~~~~~i~~~l~~~~--~~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 608 (1077)
+++.|.++||||.++||.+....+++.++++. -|||+++|-|++++... +|+|+-|++|+++.+|+++|++..
T Consensus 151 aQdTdyvlLDEPLNNLDmkHsv~iMk~Lrrla~el~KtiviVlHDINfAS~YsD~IVAlK~G~vv~~G~~~eii~~ 226 (252)
T COG4604 151 AQDTDYVLLDEPLNNLDMKHSVQIMKILRRLADELGKTIVVVLHDINFASCYSDHIVALKNGKVVKQGSPDEIIQP 226 (252)
T ss_pred eccCcEEEecCcccccchHHHHHHHHHHHHHHHHhCCeEEEEEecccHHHhhhhheeeecCCEEEecCCHHHhcCH
Confidence 99999999999999999999999999998874 38999999999999864 999999999999999999999864
|
|
| >cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-37 Score=324.85 Aligned_cols=195 Identities=22% Similarity=0.354 Sum_probs=161.9
Q ss_pred EEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHHHhhhee
Q 001438 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIG 461 (1077)
Q Consensus 382 i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 461 (1077)
++++|++++|++ ..+|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.... ..+|++++
T Consensus 1 l~i~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~-~~~~~~i~ 76 (201)
T cd03231 1 LEADELTCERDG---RALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQR-DSIARGLL 76 (201)
T ss_pred CEEEEEEEEeCC---ceeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccc-HHhhhheE
Confidence 478999999964 35899999999999999999999999999999999999999999999999886543 46778899
Q ss_pred EEccCCCccc-ccHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHHhccCCC
Q 001438 462 LVNQEPALFA-TTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPS 540 (1077)
Q Consensus 462 ~v~Q~~~lf~-~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~~~p~ 540 (1077)
|++|++.++. .|++||+.+..+....+++.++++..++ + ........+||||||||++||||++++|+
T Consensus 77 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~l~~~~l-------~----~~~~~~~~~LS~G~~qrl~laral~~~p~ 145 (201)
T cd03231 77 YLGHAPGIKTTLSVLENLRFWHADHSDEQVEEALARVGL-------N----GFEDRPVAQLSAGQQRRVALARLLLSGRP 145 (201)
T ss_pred EeccccccCCCcCHHHHHHhhcccccHHHHHHHHHHcCC-------h----hhhcCchhhCCHHHHHHHHHHHHHhcCCC
Confidence 9999998874 6999999876433333333333333222 1 12234556899999999999999999999
Q ss_pred EEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCeEEEEccCchhH-hhcCEEEEE
Q 001438 541 ILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLSTI-RNADVIAVV 591 (1077)
Q Consensus 541 illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~vtH~~~~~-~~~d~i~~l 591 (1077)
++||||||++||+.+.+.+.+.|++.. +++|+|++||+...+ ..||+++++
T Consensus 146 llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~~~~~~~ 198 (201)
T cd03231 146 LWILDEPTTALDKAGVARFAEAMAGHCARGGMVVLTTHQDLGLSEAGARELDL 198 (201)
T ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchhhhhccceeEec
Confidence 999999999999999999999998764 589999999987765 559999876
|
The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. |
| >TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-37 Score=332.81 Aligned_cols=195 Identities=32% Similarity=0.449 Sum_probs=160.0
Q ss_pred ccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHHHhhheeEEccCCCccc-ccHHHHH
Q 001438 400 FDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIGLVNQEPALFA-TTIRENI 478 (1077)
Q Consensus 400 l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~-~ti~~ni 478 (1077)
|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+. ..+|++|++.+|+ .|++||+
T Consensus 1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~-----~~~~v~q~~~l~~~~tv~e~l 75 (230)
T TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGP-----DRMVVFQNYSLLPWLTVRENI 75 (230)
T ss_pred CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCh-----hheEEecCcccCCCCCHHHHH
Confidence 579999999999999999999999999999999999999999999999876443 2489999999987 4999999
Q ss_pred hcCC----CCCCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHHhccCCCEEEEeCcCCCCCHH
Q 001438 479 LYGK----DDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAE 554 (1077)
Q Consensus 479 ~~~~----~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~~~p~illlDEpts~lD~~ 554 (1077)
.++. +..+.++..+. .. +.++.+ |++........+||||||||++||||++.+|+++||||||++||+.
T Consensus 76 ~~~~~~~~~~~~~~~~~~~--~~---~~l~~~--~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~ 148 (230)
T TIGR01184 76 ALAVDRVLPDLSKSERRAI--VE---EHIALV--GLTEAADKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDAL 148 (230)
T ss_pred HHHHHhcccCCCHHHHHHH--HH---HHHHHc--CCHHHHcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHH
Confidence 8752 11222221111 11 122222 3334455567789999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHh--CCCeEEEEccCchhHhh-cCEEEEEECCEEEEecChhHHh
Q 001438 555 SENSVQEALDRVM--VGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELI 606 (1077)
Q Consensus 555 ~~~~i~~~l~~~~--~~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~ 606 (1077)
+.+.+.+.|+++. .++|+|++||+++.+.. ||+|++|++|++++.|+..+++
T Consensus 149 ~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 203 (230)
T TIGR01184 149 TRGNLQEELMQIWEEHRVTVLMVTHDVDEALLLSDRVVMLTNGPAANIGQILEVP 203 (230)
T ss_pred HHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeCCcEecccCceecc
Confidence 9999999998864 37899999999998765 9999999999999998766653
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase. |
| >COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-37 Score=349.05 Aligned_cols=212 Identities=30% Similarity=0.481 Sum_probs=179.6
Q ss_pred cEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHHH-hhh
Q 001438 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWL-RQQ 459 (1077)
Q Consensus 381 ~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~-r~~ 459 (1077)
-++++|++++|+. .++|+|+||++.+||++|++|.||||||||+|+|.|.|+|++|+|.+||++..-.++.+- ...
T Consensus 8 ll~~~~i~K~Fgg---V~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~~G~I~~~G~~~~~~sp~~A~~~G 84 (500)
T COG1129 8 LLELRGISKSFGG---VKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFSSPRDALAAG 84 (500)
T ss_pred eeeeecceEEcCC---ceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccCCCceEEECCEEccCCCHHHHHhCC
Confidence 4889999999974 469999999999999999999999999999999999999999999999999987777654 456
Q ss_pred eeEEccCCCcccc-cHHHHHhcCCCCCC------HHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHH
Q 001438 460 IGLVNQEPALFAT-TIRENILYGKDDAT------MEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAIS 532 (1077)
Q Consensus 460 i~~v~Q~~~lf~~-ti~~ni~~~~~~~~------~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lA 532 (1077)
|+.|+||..|++. ||.|||.+|+.... ..+..+.++. +.+.+ .++...++.++ +||+||||.|+||
T Consensus 85 I~~V~QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~~--~l~~l-g~~~~~~~~v~----~LsiaqrQ~VeIA 157 (500)
T COG1129 85 IATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARE--LLARL-GLDIDPDTLVG----DLSIAQRQMVEIA 157 (500)
T ss_pred cEEEeechhccCCccHHHHhhcccccccCCCccCHHHHHHHHHH--HHHHc-CCCCChhhhhh----hCCHHHHHHHHHH
Confidence 9999999999976 99999999974332 2333332221 22212 11122455554 7999999999999
Q ss_pred HHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCeEEEEccCchhHhh-cCEEEEEECCEEEEecCh
Q 001438 533 RAIVKNPSILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSH 602 (1077)
Q Consensus 533 Ral~~~p~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~ 602 (1077)
||+..+++|+|||||||+|+.+..+.+.+.+++++ +|.++|+||||++.+.. ||||.||.||+.+..++.
T Consensus 158 rAl~~~arllIlDEPTaaLt~~E~~~Lf~~ir~Lk~~Gv~ii~ISHrl~Ei~~i~DritVlRDG~~v~~~~~ 229 (500)
T COG1129 158 RALSFDARVLILDEPTAALTVKETERLFDLIRRLKAQGVAIIYISHRLDEVFEIADRITVLRDGRVVGTRPT 229 (500)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCcHHHHHHhcCEEEEEeCCEEeeeccc
Confidence 99999999999999999999999999999999986 79999999999999865 999999999999988773
|
|
| >PRK13538 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-37 Score=324.35 Aligned_cols=195 Identities=19% Similarity=0.311 Sum_probs=161.7
Q ss_pred EEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHHHhhhee
Q 001438 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIG 461 (1077)
Q Consensus 382 i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 461 (1077)
++++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.... ..++++++
T Consensus 2 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~v~~~g~~~~~~~-~~~~~~~~ 77 (204)
T PRK13538 2 LEARNLACERDE---RILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQR-DEYHQDLL 77 (204)
T ss_pred eEEEEEEEEECC---EEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccch-HHhhhheE
Confidence 689999999964 35899999999999999999999999999999999999999999999999987654 45677899
Q ss_pred EEccCCCccc-ccHHHHHhcCCCCC---CHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHHhcc
Q 001438 462 LVNQEPALFA-TTIRENILYGKDDA---TMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVK 537 (1077)
Q Consensus 462 ~v~Q~~~lf~-~ti~~ni~~~~~~~---~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~~ 537 (1077)
|++|++.+++ .|++||+.++.+.. ..+++.++++.. |++........+||||||||++||||+++
T Consensus 78 ~~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~l~~~-----------gl~~~~~~~~~~LS~G~~qrl~la~al~~ 146 (204)
T PRK13538 78 YLGHQPGIKTELTALENLRFYQRLHGPGDDEALWEALAQV-----------GLAGFEDVPVRQLSAGQQRRVALARLWLT 146 (204)
T ss_pred EeCCccccCcCCcHHHHHHHHHHhcCccHHHHHHHHHHHc-----------CCHHHhhCChhhcCHHHHHHHHHHHHHhc
Confidence 9999998886 49999998764221 122222222222 22223344567899999999999999999
Q ss_pred CCCEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCeEEEEccCchhHhh-cCEEEEE
Q 001438 538 NPSILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLSTIRN-ADVIAVV 591 (1077)
Q Consensus 538 ~p~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~vtH~~~~~~~-~d~i~~l 591 (1077)
+|+++||||||++||+.+.+.+.+.|+++. +++|+|++||+++.+.. .+|++++
T Consensus 147 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~i~~~~~~~~~~ 202 (204)
T PRK13538 147 RAPLWILDEPFTAIDKQGVARLEALLAQHAEQGGMVILTTHQDLPVASDKVRKLRL 202 (204)
T ss_pred CCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecChhhhccCCceEEec
Confidence 999999999999999999999999998864 57899999999999976 5677766
|
|
| >COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-37 Score=289.33 Aligned_cols=216 Identities=30% Similarity=0.519 Sum_probs=176.6
Q ss_pred cEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCee--CCCCC----HH
Q 001438 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNN--IKGLD----LK 454 (1077)
Q Consensus 381 ~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~--~~~~~----~~ 454 (1077)
.|+++|++|.|+.. .+|.||+|+-+.||.+.+.||||+|||||++.|.=+.-|.+|+..|-|.. .++.+ ..
T Consensus 2 sirv~~in~~yg~~---q~lfdi~l~~~~getlvllgpsgagkssllr~lnlle~p~sg~l~ia~~~fd~s~~~~~k~i~ 78 (242)
T COG4161 2 SIQLNGINCFYGAH---QALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIR 78 (242)
T ss_pred ceEEcccccccccc---hheeeeeecCCCCCEEEEECCCCCchHHHHHHHHHHhCCCCCeEEecccccccccCccHHHHH
Confidence 48899999999754 58999999999999999999999999999999999999999999998764 33332 45
Q ss_pred HHhhheeEEccCCCcccc-cHHHHHhcCCC----CCCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHH
Q 001438 455 WLRQQIGLVNQEPALFAT-TIRENILYGKD----DATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRI 529 (1077)
Q Consensus 455 ~~r~~i~~v~Q~~~lf~~-ti~~ni~~~~~----~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri 529 (1077)
++|+.+|.|+|+..|.+- ||.||+.-... -...+...+|.++ ++.| .+.......+-.|||||+||+
T Consensus 79 ~lr~~vgmvfqqy~lwphltv~enlieap~kv~gl~~~qa~~~a~el------lkrl--rl~~~adr~plhlsggqqqrv 150 (242)
T COG4161 79 DLRRNVGMVFQQYNLWPHLTVQENLIEAPCRVLGLSKDQALARAEKL------LKRL--RLKPYADRYPLHLSGGQQQRV 150 (242)
T ss_pred HHHHhhhhhhhhhccCchhHHHHHHHhhhHHHhCCCHHHHHHHHHHH------HHHh--ccccccccCceecccchhhhH
Confidence 789999999999999976 99999864321 1122222223222 2222 122223345668999999999
Q ss_pred HHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCeEEEEccCchhHhh-cCEEEEEECCEEEEecChhHHhc
Q 001438 530 AISRAIVKNPSILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELIS 607 (1077)
Q Consensus 530 ~lARal~~~p~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~ 607 (1077)
+|||||+.+|++|++||||++|||+-..++.+.|+++. .|.|-++|||..+..+. |.+++.|++|+|+|.|+++-.-+
T Consensus 151 aiaralmmkpqvllfdeptaaldpeitaqvv~iikel~~tgitqvivthev~va~k~as~vvyme~g~ive~g~a~~ft~ 230 (242)
T COG4161 151 AIARALMMEPQVLLFDEPTAALDPEITAQIVSIIKELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDASCFTE 230 (242)
T ss_pred HHHHHHhcCCcEEeecCcccccCHHHHHHHHHHHHHHHhcCceEEEEEeehhHHHhhhhheEeeecCeeEeecchhhccC
Confidence 99999999999999999999999999999999999986 58999999999999976 99999999999999999877643
|
|
| >PRK13540 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-37 Score=323.33 Aligned_cols=194 Identities=27% Similarity=0.417 Sum_probs=160.1
Q ss_pred EEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHHHhhhee
Q 001438 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIG 461 (1077)
Q Consensus 382 i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 461 (1077)
++++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|+++|+++.. ....+|++++
T Consensus 2 l~~~~l~~~~~~---~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~-~~~~~~~~i~ 77 (200)
T PRK13540 2 LDVIELDFDYHD---QPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKK-DLCTYQKQLC 77 (200)
T ss_pred EEEEEEEEEeCC---eeEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeeEEECCCcccc-CHHHHHhheE
Confidence 689999999964 359999999999999999999999999999999999999999999999998864 3456788999
Q ss_pred EEccCCCccc-ccHHHHHhcCCCCC-CHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHHhccCC
Q 001438 462 LVNQEPALFA-TTIRENILYGKDDA-TMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNP 539 (1077)
Q Consensus 462 ~v~Q~~~lf~-~ti~~ni~~~~~~~-~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~~~p 539 (1077)
|++|++.+++ .|++||+.++.... ....+.+ ..+.+ .+++ .......+||||||||++||||++++|
T Consensus 78 ~~~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~------~l~~~-~l~~----~~~~~~~~LS~G~~~rv~laral~~~p 146 (200)
T PRK13540 78 FVGHRSGINPYLTLRENCLYDIHFSPGAVGITE------LCRLF-SLEH----LIDYPCGLLSSGQKRQVALLRLWMSKA 146 (200)
T ss_pred EeccccccCcCCCHHHHHHHHHhcCcchHHHHH------HHHHc-CCch----hhhCChhhcCHHHHHHHHHHHHHhcCC
Confidence 9999999875 69999998763111 1111111 11111 2222 233445689999999999999999999
Q ss_pred CEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCeEEEEccCchhHhhcCEEEE
Q 001438 540 SILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLSTIRNADVIAV 590 (1077)
Q Consensus 540 ~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~vtH~~~~~~~~d~i~~ 590 (1077)
+++||||||++||+.+.+.+.+.|+++. +++|+|++||+.+.+..||.-.+
T Consensus 147 ~~lilDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~d~~~~ 198 (200)
T PRK13540 147 KLWLLDEPLVALDELSLLTIITKIQEHRAKGGAVLLTSHQDLPLNKADYEEY 198 (200)
T ss_pred CEEEEeCCCcccCHHHHHHHHHHHHHHHHcCCEEEEEeCCchhccccchhhc
Confidence 9999999999999999999999999863 58999999999999999997543
|
|
| >PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-37 Score=370.91 Aligned_cols=225 Identities=26% Similarity=0.473 Sum_probs=181.2
Q ss_pred cEEEEeEEEEcCCC--------CCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCC
Q 001438 381 HIEFKDVSFCYPSR--------PDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLD 452 (1077)
Q Consensus 381 ~i~~~~v~~~y~~~--------~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~ 452 (1077)
.++++|++++|+.. .+.++|+|+||+|++||+++|+||||||||||+++|+|+++ ++|+|+++|+++...+
T Consensus 275 ~l~~~~l~~~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~-~~G~i~~~g~~i~~~~ 353 (529)
T PRK15134 275 LLDVEQLQVAFPIRKGILKRTVDHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLIN-SQGEIWFDGQPLHNLN 353 (529)
T ss_pred cccccCcEEEeecCccccccccccceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcCC-CCcEEEECCEEccccc
Confidence 58999999999621 12468999999999999999999999999999999999985 8999999999987765
Q ss_pred HHH---HhhheeEEccCC--Ccccc-cHHHHHhcCCC----CCCHHHHHHHHHHHhHHHHHhcCccchh-hhhcCCCCCC
Q 001438 453 LKW---LRQQIGLVNQEP--ALFAT-TIRENILYGKD----DATMEEITRAAKLSEAMSFISNLPERFE-TQVGERGIQL 521 (1077)
Q Consensus 453 ~~~---~r~~i~~v~Q~~--~lf~~-ti~~ni~~~~~----~~~~~~~~~~~~~~~~~~~i~~l~~g~~-t~~~~~g~~L 521 (1077)
... +|++++|++|++ .+++. |++||+.++.. .....+..+ + ..+.++.+ |+. ........+|
T Consensus 354 ~~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~--~---~~~~l~~~--~l~~~~~~~~~~~L 426 (529)
T PRK15134 354 RRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQPTLSAAQREQ--Q---VIAVMEEV--GLDPETRHRYPAEF 426 (529)
T ss_pred hhhHHHhhhceEEEEeCchhhcCCcccHHHHHHHHHHhccccCChHHHHH--H---HHHHHHHc--CCCHHHHhcCCccC
Confidence 433 467899999998 36664 99999987521 011111111 1 11222222 232 2345667899
Q ss_pred ChHHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh--CCCeEEEEccCchhHhh-cCEEEEEECCEEEE
Q 001438 522 SGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVM--VGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVK 598 (1077)
Q Consensus 522 SgGqkqri~lARal~~~p~illlDEpts~lD~~~~~~i~~~l~~~~--~~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~ 598 (1077)
|||||||++||||++.+|++|||||||++||+.+.+.+.+.|+++. .++|+|+|||+++.+.. ||+|++|++|++++
T Consensus 427 SgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~ 506 (529)
T PRK15134 427 SGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHQLAYLFISHDLHVVRALCHQVIVLRQGEVVE 506 (529)
T ss_pred CHHHHHHHHHHHHHhCCCCEEEeeCCccccCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhcCeEEEEECCEEEE
Confidence 9999999999999999999999999999999999999999999874 37899999999999865 99999999999999
Q ss_pred ecChhHHhcCCCchH
Q 001438 599 TGSHEELISNPNSAY 613 (1077)
Q Consensus 599 ~g~~~~l~~~~~~~~ 613 (1077)
.|+++++.+.+...|
T Consensus 507 ~~~~~~~~~~~~~~~ 521 (529)
T PRK15134 507 QGDCERVFAAPQQEY 521 (529)
T ss_pred EcCHHHHhcCCCChH
Confidence 999999986544444
|
|
| >TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-36 Score=369.70 Aligned_cols=205 Identities=26% Similarity=0.416 Sum_probs=174.0
Q ss_pred CcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCC---ccEEEECCeeCCCCCHHHHhhheeEEccCCCcccc
Q 001438 396 DVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPL---SGEILLDGNNIKGLDLKWLRQQIGLVNQEPALFAT 472 (1077)
Q Consensus 396 ~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~---~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ 472 (1077)
++++|+|+|+++++||+++|+||||||||||+++|+|..+|. +|+|.+||.++. ...+|+.+|||+|++++++.
T Consensus 37 ~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~---~~~~~~~i~yv~Q~~~~~~~ 113 (617)
T TIGR00955 37 RKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPID---AKEMRAISAYVQQDDLFIPT 113 (617)
T ss_pred ccccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECC---HHHHhhhceeeccccccCcc
Confidence 467999999999999999999999999999999999999885 899999999875 35678899999999999965
Q ss_pred -cHHHHHhcCCCC-----CCHHHHHHHHHHHhHHHHHhcCccchhhhhcCC--CCCCChHHHHHHHHHHHhccCCCEEEE
Q 001438 473 -TIRENILYGKDD-----ATMEEITRAAKLSEAMSFISNLPERFETQVGER--GIQLSGGQKQRIAISRAIVKNPSILLL 544 (1077)
Q Consensus 473 -ti~~ni~~~~~~-----~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~--g~~LSgGqkqri~lARal~~~p~illl 544 (1077)
||+|||.|+... .+.++ +..+.....+.+ ++++..||.+|+. +..||||||||++|||||+.+|++++|
T Consensus 114 lTV~e~l~f~~~~~~~~~~~~~~--~~~~v~~~l~~l-gL~~~~~t~vg~~~~~~~LSgGqrkRvsia~aL~~~p~vlll 190 (617)
T TIGR00955 114 LTVREHLMFQAHLRMPRRVTKKE--KRERVDEVLQAL-GLRKCANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLLFC 190 (617)
T ss_pred CcHHHHHHHHHhcCCCCCCCHHH--HHHHHHHHHHHc-CchhcCcCccCCCCCCCCcCcchhhHHHHHHHHHcCCCEEEe
Confidence 999999886421 12222 222222233322 4566789999984 478999999999999999999999999
Q ss_pred eCcCCCCCHHHHHHHHHHHHHHh-CCCeEEEEccCch-h-HhhcCEEEEEECCEEEEecChhHHh
Q 001438 545 DEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLS-T-IRNADVIAVVQGRKIVKTGSHEELI 606 (1077)
Q Consensus 545 DEpts~lD~~~~~~i~~~l~~~~-~~~t~i~vtH~~~-~-~~~~d~i~~l~~G~i~~~g~~~~l~ 606 (1077)
|||||+||+.+...+.+.|+++. +|+|+|+++|+++ . .+.+|++++|++|++++.|+++++.
T Consensus 191 DEPtsgLD~~~~~~l~~~L~~l~~~g~tvi~~~hq~~~~i~~~~D~i~ll~~G~~v~~G~~~~~~ 255 (617)
T TIGR00955 191 DEPTSGLDSFMAYSVVQVLKGLAQKGKTIICTIHQPSSELFELFDKIILMAEGRVAYLGSPDQAV 255 (617)
T ss_pred eCCCcchhHHHHHHHHHHHHHHHhCCCEEEEEeCCCCHHHHHHhceEEEeeCCeEEEECCHHHHH
Confidence 99999999999999999999875 5899999999996 4 4679999999999999999999875
|
|
| >PRK13546 teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-36 Score=331.62 Aligned_cols=208 Identities=24% Similarity=0.353 Sum_probs=169.9
Q ss_pred cEEEEeEEEEcCCC-----------------CCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEE
Q 001438 381 HIEFKDVSFCYPSR-----------------PDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILL 443 (1077)
Q Consensus 381 ~i~~~~v~~~y~~~-----------------~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~ 443 (1077)
.|+++|++++|... ..+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p~~G~I~~ 83 (264)
T PRK13546 4 SVNIKNVTKEYRIYRTNKERMKDALIPKHKNKTFFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDR 83 (264)
T ss_pred eEEEeeeEEEEEecccchHHHHHHhhhhccCCceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEE
Confidence 57788887777431 1245899999999999999999999999999999999999999999999
Q ss_pred CCeeCCCCCHHHHhhheeEEccCCCccc-ccHHHHHhcCC--CCCCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCC
Q 001438 444 DGNNIKGLDLKWLRQQIGLVNQEPALFA-TTIRENILYGK--DDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQ 520 (1077)
Q Consensus 444 ~g~~~~~~~~~~~r~~i~~v~Q~~~lf~-~ti~~ni~~~~--~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~ 520 (1077)
+|. +++++|++.+++ .|++||+.++. ...+.++..+.+. .+.+.. +++..+...+.+
T Consensus 84 ~g~-------------~~~~~~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~--~~l~~~-----~l~~~~~~~~~~ 143 (264)
T PRK13546 84 NGE-------------VSVIAISAGLSGQLTGIENIEFKMLCMGFKRKEIKAMTP--KIIEFS-----ELGEFIYQPVKK 143 (264)
T ss_pred CCE-------------EeEEecccCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHH--HHHHHc-----CCchhhcCCccc
Confidence 994 678888887775 49999997642 1223333322211 111111 233445567789
Q ss_pred CChHHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCeEEEEccCchhHhh-cCEEEEEECCEEEE
Q 001438 521 LSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVK 598 (1077)
Q Consensus 521 LSgGqkqri~lARal~~~p~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~ 598 (1077)
||||||||++||||++.+|++|||||||++||+.+.+.+.+.|.++. .++|+|++||+++.+.. ||+|++|++|++++
T Consensus 144 LS~Gq~qrv~Laral~~~p~iLlLDEPt~gLD~~~~~~l~~~L~~~~~~g~tiIiisH~~~~i~~~~d~i~~l~~G~i~~ 223 (264)
T PRK13546 144 YSSGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQKCLDKIYEFKEQNKTIFFVSHNLGQVRQFCTKIAWIEGGKLKD 223 (264)
T ss_pred CCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHcCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999998764 58999999999999865 99999999999999
Q ss_pred ecChhHHhcC
Q 001438 599 TGSHEELISN 608 (1077)
Q Consensus 599 ~g~~~~l~~~ 608 (1077)
.|+++++...
T Consensus 224 ~g~~~~~~~~ 233 (264)
T PRK13546 224 YGELDDVLPK 233 (264)
T ss_pred eCCHHHHHHH
Confidence 9999998875
|
|
| >PRK13543 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-36 Score=323.65 Aligned_cols=197 Identities=21% Similarity=0.314 Sum_probs=162.2
Q ss_pred cEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHHHhhhe
Q 001438 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQI 460 (1077)
Q Consensus 381 ~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i 460 (1077)
.++++|++++|++ .++++++||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++... ..++.+
T Consensus 11 ~l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~i~~~---~~~~~i 84 (214)
T PRK13543 11 LLAAHALAFSRNE---EPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRG---DRSRFM 84 (214)
T ss_pred eEEEeeEEEecCC---ceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCeeEEECCEEccch---hhhhce
Confidence 5899999999964 3589999999999999999999999999999999999999999999999988652 345679
Q ss_pred eEEccCCCcccc-cHHHHHhcCCC--CCCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHHhcc
Q 001438 461 GLVNQEPALFAT-TIRENILYGKD--DATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVK 537 (1077)
Q Consensus 461 ~~v~Q~~~lf~~-ti~~ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~~ 537 (1077)
+|++|++.+++. |++||+.++.. ....++ .+ .+..+.+ .+++ .......+||||||||++||||+++
T Consensus 85 ~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~--~~---~~~l~~~-~l~~----~~~~~~~~LS~G~~qrv~laral~~ 154 (214)
T PRK13543 85 AYLGHLPGLKADLSTLENLHFLCGLHGRRAKQ--MP---GSALAIV-GLAG----YEDTLVRQLSAGQKKRLALARLWLS 154 (214)
T ss_pred EEeecCcccccCCcHHHHHHHHHHhcCCcHHH--HH---HHHHHHc-CChh----hccCChhhCCHHHHHHHHHHHHHhc
Confidence 999999998886 99999976432 111111 11 1111211 2332 2344567899999999999999999
Q ss_pred CCCEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCeEEEEccCchhHhh-cCEEEEEEC
Q 001438 538 NPSILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLSTIRN-ADVIAVVQG 593 (1077)
Q Consensus 538 ~p~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~vtH~~~~~~~-~d~i~~l~~ 593 (1077)
+|+++||||||++||+++.+.+.+.|++.. +++|+|++||+++.+.. ||++++++.
T Consensus 155 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~~~i~~l~~ 212 (214)
T PRK13543 155 PAPLWLLDEPYANLDLEGITLVNRMISAHLRGGGAALVTTHGAYAAPPVRTRMLTLEA 212 (214)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecChhhhhhhcceEEEEee
Confidence 999999999999999999999999998763 57999999999999865 999999864
|
|
| >COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-37 Score=314.64 Aligned_cols=196 Identities=31% Similarity=0.468 Sum_probs=171.0
Q ss_pred ceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCC----CCHHHHhhheeEEccCCCcccc-cHHH
Q 001438 402 KFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKG----LDLKWLRQQIGLVNQEPALFAT-TIRE 476 (1077)
Q Consensus 402 ~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~----~~~~~~r~~i~~v~Q~~~lf~~-ti~~ 476 (1077)
+++|+.+.-.++||.|+||||||||+|+|.|+..|++|.|.+||.-+.+ +...--+++||||+||..||+- ||+-
T Consensus 16 ~a~~~~p~~GvTAlFG~SGsGKTslin~IaGL~rPdeG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH~tVrg 95 (352)
T COG4148 16 DANFTLPARGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHYTVRG 95 (352)
T ss_pred EEeccCCCCceEEEecCCCCChhhHHHHHhccCCccccEEEECCEEeecccCCcccChhhheeeeEeeccccccceEEec
Confidence 5888888768999999999999999999999999999999999987643 3444557789999999999976 9999
Q ss_pred HHhcCCCCCCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHH
Q 001438 477 NILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESE 556 (1077)
Q Consensus 477 ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~~~p~illlDEpts~lD~~~~ 556 (1077)
|+.||.......+..+.+.+.+.. ..+...+.+||||||||+||+|||+.+|++|++|||+|+||...+
T Consensus 96 NL~YG~~~~~~~~fd~iv~lLGI~-----------hLL~R~P~~LSGGEkQRVAIGRALLt~P~LLLmDEPLaSLD~~RK 164 (352)
T COG4148 96 NLRYGMWKSMRAQFDQLVALLGIE-----------HLLDRYPGTLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRK 164 (352)
T ss_pred chhhhhcccchHhHHHHHHHhCcH-----------HHHhhCCCccCcchhhHHHHHHHHhcCCCeeeecCchhhcccchh
Confidence 999998766565666666555443 344555678999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhC--CCeEEEEccCchhHhh-cCEEEEEECCEEEEecChhHHhcC
Q 001438 557 NSVQEALDRVMV--GRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELISN 608 (1077)
Q Consensus 557 ~~i~~~l~~~~~--~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 608 (1077)
++++-.|+++.+ +.-++.|||.++.+.+ ||+|++|++|++...|..+|.+..
T Consensus 165 ~EilpylERL~~e~~IPIlYVSHS~~Ev~RLAd~vV~le~GkV~A~g~~e~v~~~ 219 (352)
T COG4148 165 REILPYLERLRDEINIPILYVSHSLDEVLRLADRVVVLENGKVKASGPLEEVWGS 219 (352)
T ss_pred hHHHHHHHHHHHhcCCCEEEEecCHHHHHhhhheEEEecCCeEEecCcHHHHhcC
Confidence 999999988864 6789999999998765 999999999999999999999875
|
|
| >PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-34 Score=346.39 Aligned_cols=371 Identities=17% Similarity=0.133 Sum_probs=262.7
Q ss_pred hhcccchHHHHHHHHHHHHHhhHHhHH-HHHHHHHHHhhccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001438 689 SMVRPDWTYGVCGTICAIIAGAQMPLF-ALGVSQALVAYYMDWDTTQREVKKITILFCCAAVITVIVHAIEHLSFGIMGE 767 (1077)
Q Consensus 689 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 767 (1077)
.+.+++++.+..+++++++........ ++....+++... . . ... ...+.++.++..++.+++.++....+.
T Consensus 6 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~lid~~~-~--~-~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (547)
T PRK10522 6 LVWRQYRWPFISVMALSLASAALGIGLIAFINQRLIETAD-T--S-LLV----LPEFLGLLLLLMAVTLGSQLALTTLGH 77 (547)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc-c--c-chH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666666666555555443332 333344443221 1 0 001 111222233334566778888999999
Q ss_pred HHHHHHHHHHHHHHHcCCccccccccCCchhHHHHHhhcHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 001438 768 RLTLRVREKMFSAILSNEIGWFDEMDNSSSILASRLESDATLLRTIVVDRSTILIQNFGLVTASFVIAFILNWRITLVVV 847 (1077)
Q Consensus 768 ~~~~~Lr~~l~~~llr~p~~FFD~~~~~~G~IlnR~s~D~~~i~~~l~~~l~~~~~~~~~~~~~i~i~~~~~w~l~l~~l 847 (1077)
++..++|.++|+++++.|++||++ +++|++++|+++|++.+...+. .+..++..++.+++.++++++++|+++++++
T Consensus 78 ~~~~~lR~~l~~~ll~~~~~~~~~--~~~g~~lsrl~~dv~~i~~~~~-~l~~~~~~~~~~i~~~~~l~~~~~~l~li~l 154 (547)
T PRK10522 78 HFVYRLRSEFIKRILDTHVERIEQ--LGSASLLASLTSDVRNITIAFV-RLPELVQGIILTLGSAAYLAWLSPKMLLVTA 154 (547)
T ss_pred HHHHHHHHHHHHHHHhCCHHHHhc--cCccchHHHHHhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 999999999999999999999995 9999999999999999998765 4677888888899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhHHHHHHHcchHHHHHhcch---HHHHHHHHHHhhhhhHHHHHHHHHHH
Q 001438 848 ATYPLIISGHISEKLFFQGYGGNLSKAYLKANMLAAEAVSNIRTVAAFCSE---DKVLELYSRELVEPSKRSFIRGQIAG 924 (1077)
Q Consensus 848 ~~~Pl~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Etl~Gi~tIrAf~~e---~~~~~~f~~~~~~~~~~~~~~~~~~~ 924 (1077)
+.+|+.++......+..++...+.++...+..+.+.|.++|+++++ ++.+ +.+.++|.+..++..+...+......
T Consensus 155 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~i~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (547)
T PRK10522 155 IWMAVTIWGGFVLVARVYKHMATLRETEDKLYNDYQTVLEGRKELT-LNRERAEYVFENEYEPDAQEYRHHIIRADTFHL 233 (547)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhh-ccHHHHHHHHHHHHhHHHHHHHhhhHHHHHHHH
Confidence 9999887776666777776677777888888899999999999995 4443 46778888777776655554444433
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHcCCCCcc
Q 001438 925 IFYGISQFFIFSSYGLALWYGSVLMGKELASFKSVMKSFMVLIVTALAMGETLALVPDLLKGNQMAASVFEVLDRKTQVI 1004 (1077)
Q Consensus 925 ~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~l~~~~~~~ 1004 (1077)
..............++.+++++.+. .+ +.+....+..+......|+..+....++++.+..+.+|+.++++.+++.+
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~l~~~~~~~~ 310 (547)
T PRK10522 234 SAVNWSNIMMLGAIGLVFYMANSLG-WA--DTNVAATYSLTLLFLRTPLLSAVGALPTLLSAQVAFNKLNKLALAPYKAE 310 (547)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh-cC--ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccc
Confidence 3333333333333344444444321 12 22222223333333456888889999999999999999999876543221
Q ss_pred CCCCcccccccccEEEeeeeeeCCCCCcccccccceeeeeCCCEEEEECCCCCCHHHHHHHHhhccCCCCCCC
Q 001438 1005 GDIGEELTNVEGTIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKA 1077 (1077)
Q Consensus 1005 ~~~~~~~~~~~G~I~f~nVsf~Y~~~~~~~VLk~vsl~I~~GekVaIVGrTGsGKSTLi~lL~Rfyd~~~G~i 1077 (1077)
.+...+ .+..+.|+|+||+|+||++ .++|+|+||+|+|||++|||||||||||||+++|.|+|+|++|+|
T Consensus 311 ~~~~~~-~~~~~~i~~~~v~f~y~~~--~~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~~~~G~i 380 (547)
T PRK10522 311 FPRPQA-FPDWQTLELRNVTFAYQDN--GFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEI 380 (547)
T ss_pred cccccc-cCcCceEEEEEEEEEeCCC--CeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEE
Confidence 111111 1224689999999999853 358999999999999999999999999999999999999999975
|
|
| >TIGR01257 rim_protein retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-35 Score=382.65 Aligned_cols=220 Identities=21% Similarity=0.364 Sum_probs=183.7
Q ss_pred ccEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHHHhhh
Q 001438 380 GHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQ 459 (1077)
Q Consensus 380 ~~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~ 459 (1077)
..|+++|++++|+++ ++.+++|+||+|++||++||+||||||||||+++|+|+.+|++|+|.++|+++.. +....|++
T Consensus 1936 ~~L~v~nLsK~Y~~~-~~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~ptsG~I~i~G~~i~~-~~~~~r~~ 2013 (2272)
T TIGR01257 1936 DILRLNELTKVYSGT-SSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILT-NISDVHQN 2013 (2272)
T ss_pred ceEEEEEEEEEECCC-CceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECcc-hHHHHhhh
Confidence 469999999999742 2469999999999999999999999999999999999999999999999999865 45567888
Q ss_pred eeEEccCCCcccc-cHHHHHhcCCC--CCCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHHhc
Q 001438 460 IGLVNQEPALFAT-TIRENILYGKD--DATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIV 536 (1077)
Q Consensus 460 i~~v~Q~~~lf~~-ti~~ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~ 536 (1077)
|||+||++.+++. |++||+.+... ....++..+.. ... ++.+ |+.........+||||||||++|||||+
T Consensus 2014 IGy~pQ~~~L~~~LTv~E~L~l~a~l~g~~~~~~~~~v--~~l---Le~l--gL~~~~dk~~~~LSGGqKqRLslA~ALi 2086 (2272)
T TIGR01257 2014 MGYCPQFDAIDDLLTGREHLYLYARLRGVPAEEIEKVA--NWS---IQSL--GLSLYADRLAGTYSGGNKRKLSTAIALI 2086 (2272)
T ss_pred EEEEeccccCCCCCCHHHHHHHHHHhcCCCHHHHHHHH--HHH---HHHc--CCHHHhcCChhhCCHHHHHHHHHHHHHh
Confidence 9999999998865 99999976321 11222222111 111 2222 3334455667789999999999999999
Q ss_pred cCCCEEEEeCcCCCCCHHHHHHHHHHHHHH-hCCCeEEEEccCchhHhh-cCEEEEEECCEEEEecChhHHhcC
Q 001438 537 KNPSILLLDEATSALDAESENSVQEALDRV-MVGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELISN 608 (1077)
Q Consensus 537 ~~p~illlDEpts~lD~~~~~~i~~~l~~~-~~~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 608 (1077)
.+|+|++|||||+|||+.+++.+.+.|+++ .+|+|+|++||+++.++. ||||++|++|+++..|+++++.++
T Consensus 2087 ~~P~VLLLDEPTsGLDp~sr~~l~~lL~~l~~~g~TIILtTH~mee~e~lcDrV~IL~~G~i~~~Gs~q~Lk~~ 2160 (2272)
T TIGR01257 2087 GCPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSHSMEECEALCTRLAIMVKGAFQCLGTIQHLKSK 2160 (2272)
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHHH
Confidence 999999999999999999999999999886 458999999999999876 999999999999999999998654
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. |
| >TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-36 Score=325.27 Aligned_cols=204 Identities=29% Similarity=0.392 Sum_probs=160.1
Q ss_pred EEEEeEEEEcCCC---C-CcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEEC--Ce--eCCCCCH
Q 001438 382 IEFKDVSFCYPSR---P-DVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLD--GN--NIKGLDL 453 (1077)
Q Consensus 382 i~~~~v~~~y~~~---~-~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~--g~--~~~~~~~ 453 (1077)
++++|++++|+.. . ..++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++ |. ++..++.
T Consensus 2 l~~~~l~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~~~g~~~~~~~~~~ 81 (224)
T TIGR02324 2 LEVEDLSKTFTLHQQGGVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQASP 81 (224)
T ss_pred EEEEeeEEEeecccCCCcceEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEEecCCCccchhhcCH
Confidence 6899999999631 1 1368999999999999999999999999999999999999999999998 43 6655554
Q ss_pred HH---H-hhheeEEccCCCcccc-cHHHHHhcCCC--CCCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHH
Q 001438 454 KW---L-RQQIGLVNQEPALFAT-TIRENILYGKD--DATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQK 526 (1077)
Q Consensus 454 ~~---~-r~~i~~v~Q~~~lf~~-ti~~ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqk 526 (1077)
.. + +++++|++|++.+++. |++||+.++.. ....++..+. ..+..+.+ .+++. .....+.+||||||
T Consensus 82 ~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~--~~~~l~~~-~l~~~---~~~~~~~~LS~G~~ 155 (224)
T TIGR02324 82 REVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLERGVPREAARAR--ARELLARL-NIPER---LWHLPPATFSGGEQ 155 (224)
T ss_pred HHHHHHHhcceEEEecccccCCCccHHHHHHHHHHHcCCCHHHHHHH--HHHHHHHc-CCchh---hhhCCcccCCHHHH
Confidence 43 3 3579999999998875 99999976421 1122221111 11122211 22221 12345778999999
Q ss_pred HHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCeEEEEccCchhHh-hcCEEEEE
Q 001438 527 QRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLSTIR-NADVIAVV 591 (1077)
Q Consensus 527 qri~lARal~~~p~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~vtH~~~~~~-~~d~i~~l 591 (1077)
||++||||++.+|+++||||||++||+++.+.+.+.|+++. +++|+|++||+++.+. .||+++.+
T Consensus 156 qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vsH~~~~~~~~~d~i~~~ 222 (224)
T TIGR02324 156 QRVNIARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKARGAALIGIFHDEEVRELVADRVMDV 222 (224)
T ss_pred HHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcceeEec
Confidence 99999999999999999999999999999999999998874 4889999999999886 59999876
|
Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. |
| >PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-36 Score=343.66 Aligned_cols=208 Identities=24% Similarity=0.341 Sum_probs=168.4
Q ss_pred cEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHHHhhhe
Q 001438 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQI 460 (1077)
Q Consensus 381 ~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i 460 (1077)
.++++|++|.|+++...++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.+.
T Consensus 21 mL~lknL~~~~~~~~~~~IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~P~sGeI~I~G~~~------------ 88 (549)
T PRK13545 21 FDKLKDLFFRSKDGEYHYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKGSAA------------ 88 (549)
T ss_pred eeEEEEEEEecCCCccceEEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCCCCceEEEECCEee------------
Confidence 58999999999765445689999999999999999999999999999999999999999999999751
Q ss_pred eEEccCCCccc-ccHHHHHhcCC--CCCCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHHhcc
Q 001438 461 GLVNQEPALFA-TTIRENILYGK--DDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVK 537 (1077)
Q Consensus 461 ~~v~Q~~~lf~-~ti~~ni~~~~--~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~~ 537 (1077)
++.+.+.+++ .|++||+.++. ...+.++..+.+ ..+.+.+ |++......+.+||||||||++|||||+.
T Consensus 89 -~i~~~~~l~~~lTV~EnL~l~~~~~~~~~~e~~e~i--~elLe~l-----gL~~~ld~~~~~LSGGQrQRVaLArAL~~ 160 (549)
T PRK13545 89 -LIAISSGLNGQLTGIENIELKGLMMGLTKEKIKEII--PEIIEFA-----DIGKFIYQPVKTYSSGMKSRLGFAISVHI 160 (549)
T ss_pred -eEEeccccCCCCcHHHHHHhhhhhcCCCHHHHHHHH--HHHHHHc-----CChhHhhCCcccCCHHHHHHHHHHHHHHh
Confidence 2233444444 49999997643 122233322211 1122221 23334455677999999999999999999
Q ss_pred CCCEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCeEEEEccCchhHhh-cCEEEEEECCEEEEecChhHHhcC
Q 001438 538 NPSILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELISN 608 (1077)
Q Consensus 538 ~p~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 608 (1077)
+|++|||||||++||+.+.+.+.+.|+++. +|+|+|++||+++.+.. ||++++|++|++++.|+++++..+
T Consensus 161 ~P~LLLLDEPTsgLD~~sr~~LlelL~el~~~G~TIIIVSHdl~~i~~l~DrIivL~~GkIv~~G~~~el~~~ 233 (549)
T PRK13545 161 NPDILVIDEALSVGDQTFTKKCLDKMNEFKEQGKTIFFISHSLSQVKSFCTKALWLHYGQVKEYGDIKEVVDH 233 (549)
T ss_pred CCCEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEECCHHHHHhh
Confidence 999999999999999999999999998864 58999999999999865 999999999999999999998764
|
|
| >TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-36 Score=363.59 Aligned_cols=224 Identities=28% Similarity=0.461 Sum_probs=175.9
Q ss_pred cEEEEeEEEEcCC--CCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEEC-Cee---CCCCC--
Q 001438 381 HIEFKDVSFCYPS--RPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLD-GNN---IKGLD-- 452 (1077)
Q Consensus 381 ~i~~~~v~~~y~~--~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~-g~~---~~~~~-- 452 (1077)
.++++|++++|++ ..+.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++ |.+ +...+
T Consensus 279 ~l~~~~l~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~~g~~~~~~~~~~~~ 358 (520)
T TIGR03269 279 IIKVRNVSKRYISVDRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPGPD 358 (520)
T ss_pred eEEEeccEEEeccCCCCCceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEecCCccccccccchh
Confidence 5999999999963 122468999999999999999999999999999999999999999999996 643 33332
Q ss_pred -HHHHhhheeEEccCCCcccc-cHHHHHhcCCC-CCCHHHHHHHHHHHhHHHHHhcCccc-hhhhhcCCCCCCChHHHHH
Q 001438 453 -LKWLRQQIGLVNQEPALFAT-TIRENILYGKD-DATMEEITRAAKLSEAMSFISNLPER-FETQVGERGIQLSGGQKQR 528 (1077)
Q Consensus 453 -~~~~r~~i~~v~Q~~~lf~~-ti~~ni~~~~~-~~~~~~~~~~~~~~~~~~~i~~l~~g-~~t~~~~~g~~LSgGqkqr 528 (1077)
...+|++++|+||++.+|+. |++||+.++.. ....++.. .+.....+.+ .+++- .+........+||||||||
T Consensus 359 ~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~--~~~~~~l~~~-~l~~~~~~~~~~~~~~~LSgGq~qr 435 (520)
T TIGR03269 359 GRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGLELPDELAR--MKAVITLKMV-GFDEEKAEEILDKYPDELSEGERHR 435 (520)
T ss_pred hHHHHhhhEEEEccCcccCCCCcHHHHHHHHHHcCCCHHHHH--HHHHHHHHhC-CCCCccchhhhhCChhhCCHHHHHH
Confidence 23456789999999988875 99999976321 11111111 1111122221 12210 0113455677899999999
Q ss_pred HHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh--CCCeEEEEccCchhHhh-cCEEEEEECCEEEEecChhHH
Q 001438 529 IAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVM--VGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEEL 605 (1077)
Q Consensus 529 i~lARal~~~p~illlDEpts~lD~~~~~~i~~~l~~~~--~~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l 605 (1077)
++|||||+.+|++|||||||++||+.+.+.+.+.|+++. .++|+|+|||+++.+.. ||+|++|++|++++.|+++++
T Consensus 436 v~laral~~~p~lLllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 515 (520)
T TIGR03269 436 VALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDMDFVLDVCDRAALMRDGKIVKIGDPEEI 515 (520)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 999999999999999999999999999999999998874 37999999999999865 999999999999999999887
Q ss_pred hc
Q 001438 606 IS 607 (1077)
Q Consensus 606 ~~ 607 (1077)
.+
T Consensus 516 ~~ 517 (520)
T TIGR03269 516 VE 517 (520)
T ss_pred Hh
Confidence 54
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. |
| >PRK13539 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-36 Score=318.11 Aligned_cols=194 Identities=26% Similarity=0.328 Sum_probs=160.2
Q ss_pred EEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHHHhhhee
Q 001438 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIG 461 (1077)
Q Consensus 382 i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 461 (1077)
++++|+++.|++ ..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++.. . ..|++++
T Consensus 3 l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~--~-~~~~~~~ 76 (207)
T PRK13539 3 LEGEDLACVRGG---RVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDD--P-DVAEACH 76 (207)
T ss_pred EEEEeEEEEECC---eEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeCcc--h-hhHhhcE
Confidence 789999999964 358999999999999999999999999999999999999999999999998753 2 2778899
Q ss_pred EEccCCCcc-cccHHHHHhcCCC--CCCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHHhccC
Q 001438 462 LVNQEPALF-ATTIRENILYGKD--DATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKN 538 (1077)
Q Consensus 462 ~v~Q~~~lf-~~ti~~ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~~~ 538 (1077)
|++|++.++ ..|++||+.+... ....+++.++++..++ .........+||||||||++||||++++
T Consensus 77 ~~~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l-----------~~~~~~~~~~LS~G~~qrl~la~al~~~ 145 (207)
T PRK13539 77 YLGHRNAMKPALTVAENLEFWAAFLGGEELDIAAALEAVGL-----------APLAHLPFGYLSAGQKRRVALARLLVSN 145 (207)
T ss_pred EecCCCcCCCCCcHHHHHHHHHHhcCCcHHHHHHHHHHcCC-----------HHHHcCChhhcCHHHHHHHHHHHHHhcC
Confidence 999988776 4699999976432 1222233333332222 2222344568999999999999999999
Q ss_pred CCEEEEeCcCCCCCHHHHHHHHHHHHHH-hCCCeEEEEccCchhHhhcCEEEEEEC
Q 001438 539 PSILLLDEATSALDAESENSVQEALDRV-MVGRTTVVVAHRLSTIRNADVIAVVQG 593 (1077)
Q Consensus 539 p~illlDEpts~lD~~~~~~i~~~l~~~-~~~~t~i~vtH~~~~~~~~d~i~~l~~ 593 (1077)
|+++||||||++||+.+.+.+.+.|++. .+++|+|++||+++.+.. |+++.++.
T Consensus 146 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~-~~~~~~~~ 200 (207)
T PRK13539 146 RPIWILDEPTAALDAAAVALFAELIRAHLAQGGIVIAATHIPLGLPG-ARELDLGP 200 (207)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCchhhcc-CcEEeecC
Confidence 9999999999999999999999999875 458999999999999988 99987754
|
|
| >PRK13549 xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-36 Score=362.78 Aligned_cols=218 Identities=20% Similarity=0.375 Sum_probs=176.2
Q ss_pred cEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccC-CCccEEEECCeeCCCCCH-HHHhh
Q 001438 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYE-PLSGEILLDGNNIKGLDL-KWLRQ 458 (1077)
Q Consensus 381 ~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~-~~~G~i~~~g~~~~~~~~-~~~r~ 458 (1077)
.|+++|+++.|+...+.++|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|+++...+. +..++
T Consensus 259 ~l~~~~l~~~~~~~~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~~~G~i~~~g~~~~~~~~~~~~~~ 338 (506)
T PRK13549 259 ILEVRNLTAWDPVNPHIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFIDGKPVKIRNPQQAIAQ 338 (506)
T ss_pred eEEEecCccccccccccccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCcEEEECCEECCCCCHHHHHHC
Confidence 5899999999953223458999999999999999999999999999999999998 599999999999875543 34567
Q ss_pred heeEEccCC---Cccc-ccHHHHHhcCCC-CC------CHHHHHHHHHHHhHHHHHhcCccchh-hhhcCCCCCCChHHH
Q 001438 459 QIGLVNQEP---ALFA-TTIRENILYGKD-DA------TMEEITRAAKLSEAMSFISNLPERFE-TQVGERGIQLSGGQK 526 (1077)
Q Consensus 459 ~i~~v~Q~~---~lf~-~ti~~ni~~~~~-~~------~~~~~~~~~~~~~~~~~i~~l~~g~~-t~~~~~g~~LSgGqk 526 (1077)
.++|++|++ .+++ .|+.||+.++.. .. ..++.. . ...+.++.+ |+. ........+||||||
T Consensus 339 ~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~--~---~~~~~l~~~--~l~~~~~~~~~~~LSgG~k 411 (506)
T PRK13549 339 GIAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAAEL--K---TILESIQRL--KVKTASPELAIARLSGGNQ 411 (506)
T ss_pred CCEEeCcchhhCCCcCCCCHHHHhhhhhhhhhccCcccChHHHH--H---HHHHHHHhc--CccCCCcccccccCCHHHH
Confidence 899999996 4665 499999987531 00 111111 1 122223333 232 124556679999999
Q ss_pred HHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCeEEEEccCchhHhh-cCEEEEEECCEEEEecChhH
Q 001438 527 QRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEE 604 (1077)
Q Consensus 527 qri~lARal~~~p~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~ 604 (1077)
||++||||++.+|++|||||||++||+.+.+.+.+.|+++. +|+|+|++||+++.+.. ||++++|++|+++..|+.++
T Consensus 412 qrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~~sHd~~~~~~~~d~v~~l~~G~i~~~~~~~~ 491 (506)
T PRK13549 412 QKAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQQGVAIIVISSELPEVLGLSDRVLVMHEGKLKGDLINHN 491 (506)
T ss_pred HHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEecccc
Confidence 99999999999999999999999999999999999998864 58999999999999865 99999999999999998877
Q ss_pred H
Q 001438 605 L 605 (1077)
Q Consensus 605 l 605 (1077)
+
T Consensus 492 ~ 492 (506)
T PRK13549 492 L 492 (506)
T ss_pred C
Confidence 5
|
|
| >TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-36 Score=317.41 Aligned_cols=193 Identities=20% Similarity=0.279 Sum_probs=157.0
Q ss_pred EEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHHHhhhee
Q 001438 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIG 461 (1077)
Q Consensus 382 i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 461 (1077)
++++|+++.|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.... ..++++++
T Consensus 1 l~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~-~~~~~~i~ 76 (198)
T TIGR01189 1 LAARNLACSRGE---RMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQR-DEPHRNIL 76 (198)
T ss_pred CEEEEEEEEECC---EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccch-HHhhhheE
Confidence 478999999964 35899999999999999999999999999999999999999999999999987664 45677899
Q ss_pred EEccCCCccc-ccHHHHHhcCCCCCC--HHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHHhccC
Q 001438 462 LVNQEPALFA-TTIRENILYGKDDAT--MEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKN 538 (1077)
Q Consensus 462 ~v~Q~~~lf~-~ti~~ni~~~~~~~~--~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~~~ 538 (1077)
|++|++.+++ .|++||+.+...... .+++.++++..+ ++........+||||||||++||||++++
T Consensus 77 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~-----------l~~~~~~~~~~LS~G~~qrv~la~al~~~ 145 (198)
T TIGR01189 77 YLGHLPGLKPELSALENLHFWAAIHGGAQRTIEDALAAVG-----------LTGFEDLPAAQLSAGQQRRLALARLWLSR 145 (198)
T ss_pred EeccCcccccCCcHHHHHHHHHHHcCCcHHHHHHHHHHcC-----------CHHHhcCChhhcCHHHHHHHHHHHHHhcC
Confidence 9999998887 599999976532111 122333333222 22223445568999999999999999999
Q ss_pred CCEEEEeCcCCCCCHHHHHHHHHHHHHH-hCCCeEEEEccCchhHhhcCEEEE
Q 001438 539 PSILLLDEATSALDAESENSVQEALDRV-MVGRTTVVVAHRLSTIRNADVIAV 590 (1077)
Q Consensus 539 p~illlDEpts~lD~~~~~~i~~~l~~~-~~~~t~i~vtH~~~~~~~~d~i~~ 590 (1077)
|+++||||||++||+.+.+.+.+.|+++ .+++|+|++||+...+. |++++.
T Consensus 146 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~~-~~~~~~ 197 (198)
T TIGR01189 146 APLWILDEPTTALDKAGVALLAGLLRAHLARGGIVLLTTHQDLGLV-EARELR 197 (198)
T ss_pred CCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEEccccccc-ceEEee
Confidence 9999999999999999999999999886 45889999999985433 355543
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c. |
| >PLN03211 ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-36 Score=368.09 Aligned_cols=204 Identities=26% Similarity=0.405 Sum_probs=170.2
Q ss_pred cccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCC--ccEEEECCeeCCCCCHHHHhhheeEEccCCCcccc-c
Q 001438 397 VAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPL--SGEILLDGNNIKGLDLKWLRQQIGLVNQEPALFAT-T 473 (1077)
Q Consensus 397 ~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~--~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~-t 473 (1077)
+.+|+|+|+++++||++||+||||||||||+++|+|..+|. +|+|.+||+++.. ..++++|||+|++.+++. |
T Consensus 81 ~~iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLaG~~~~~~~sG~I~inG~~~~~----~~~~~i~yv~Q~~~l~~~lT 156 (659)
T PLN03211 81 RTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTK----QILKRTGFVTQDDILYPHLT 156 (659)
T ss_pred CeeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCceeEEEEECCEECch----hhccceEEECcccccCCcCC
Confidence 46999999999999999999999999999999999999885 8999999998742 345679999999999965 9
Q ss_pred HHHHHhcCC----C-CCCHHHHHHHHHHHhHHHHHhcCccchhhhhcC-CCCCCChHHHHHHHHHHHhccCCCEEEEeCc
Q 001438 474 IRENILYGK----D-DATMEEITRAAKLSEAMSFISNLPERFETQVGE-RGIQLSGGQKQRIAISRAIVKNPSILLLDEA 547 (1077)
Q Consensus 474 i~~ni~~~~----~-~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~-~g~~LSgGqkqri~lARal~~~p~illlDEp 547 (1077)
++||+.++. + ..+.++..+. .....+.+ ++++..||.+|+ .+..||||||||++|||||+.+|+||+||||
T Consensus 157 V~E~l~~~a~~~~~~~~~~~~~~~~--v~~~l~~l-gL~~~~~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~iLlLDEP 233 (659)
T PLN03211 157 VRETLVFCSLLRLPKSLTKQEKILV--AESVISEL-GLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEP 233 (659)
T ss_pred HHHHHHHHHHhCCCCCCCHHHHHHH--HHHHHHHc-CChhhcCceeCCCCCCCcChhhhhHHHHHHHHHhCCCEEEEeCC
Confidence 999998753 1 1222222111 11222222 355566888875 4678999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHh-CCCeEEEEccCchh-H-hhcCEEEEEECCEEEEecChhHHhc
Q 001438 548 TSALDAESENSVQEALDRVM-VGRTTVVVAHRLST-I-RNADVIAVVQGRKIVKTGSHEELIS 607 (1077)
Q Consensus 548 ts~lD~~~~~~i~~~l~~~~-~~~t~i~vtH~~~~-~-~~~d~i~~l~~G~i~~~g~~~~l~~ 607 (1077)
|++||+.++..+.+.|+++. +|+|+|+++|+++. + +.+|+|++|++|++++.|+++++.+
T Consensus 234 tsgLD~~~~~~l~~~L~~l~~~g~TvI~~sH~~~~~i~~~~D~iilL~~G~iv~~G~~~~~~~ 296 (659)
T PLN03211 234 TSGLDATAAYRLVLTLGSLAQKGKTIVTSMHQPSSRVYQMFDSVLVLSEGRCLFFGKGSDAMA 296 (659)
T ss_pred CCCcCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhceEEEecCCcEEEECCHHHHHH
Confidence 99999999999999999875 58999999999984 4 5699999999999999999999863
|
|
| >cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-36 Score=322.35 Aligned_cols=197 Identities=27% Similarity=0.387 Sum_probs=155.2
Q ss_pred EEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHHHhhhee
Q 001438 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIG 461 (1077)
Q Consensus 382 i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 461 (1077)
+.++|+++.|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...
T Consensus 23 l~~~~~~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~---------- 89 (224)
T cd03220 23 LGILGRKGEVGE---FWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRVSSLL---------- 89 (224)
T ss_pred hhhhhhhhhcCC---eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEchhh----------
Confidence 677888888864 4699999999999999999999999999999999999999999999999875311
Q ss_pred EEccCCCcc-cccHHHHHhcCCC--CCCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHHhccC
Q 001438 462 LVNQEPALF-ATTIRENILYGKD--DATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKN 538 (1077)
Q Consensus 462 ~v~Q~~~lf-~~ti~~ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~~~ 538 (1077)
.+...++ +.|++||+.++.. ..+.++..+ +...+.+.+ .+++. ......+||||||||++||||++.+
T Consensus 90 --~~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~--~~~~~l~~~-~l~~~----~~~~~~~LSgG~~qrv~laral~~~ 160 (224)
T cd03220 90 --GLGGGFNPELTGRENIYLNGRLLGLSRKEIDE--KIDEIIEFS-ELGDF----IDLPVKTYSSGMKARLAFAIATALE 160 (224)
T ss_pred --cccccCCCCCcHHHHHHHHHHHcCCCHHHHHH--HHHHHHHHc-CChhh----hhCChhhCCHHHHHHHHHHHHHhcC
Confidence 1112222 4699999987532 112222211 111222222 23333 3445568999999999999999999
Q ss_pred CCEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCeEEEEccCchhHhh-cCEEEEEECCEEEEec
Q 001438 539 PSILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTG 600 (1077)
Q Consensus 539 p~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~g 600 (1077)
|+++||||||++||+.+++.+.+.|++.. +++|+|++||+++.+.. ||++++|++|++++.|
T Consensus 161 p~llllDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g 224 (224)
T cd03220 161 PDILLIDEVLAVGDAAFQEKCQRRLRELLKQGKTVILVSHDPSSIKRLCDRALVLEKGKIRFDG 224 (224)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEecC
Confidence 99999999999999999999999998864 46899999999998865 9999999999998765
|
Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2. |
| >PRK13409 putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-36 Score=363.06 Aligned_cols=192 Identities=22% Similarity=0.322 Sum_probs=152.0
Q ss_pred eEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEE-----------ECCeeCCCCCHH
Q 001438 386 DVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEIL-----------LDGNNIKGLDLK 454 (1077)
Q Consensus 386 ~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~-----------~~g~~~~~~~~~ 454 (1077)
+++++|+.+ ..+|++++ .+++||++||+||||||||||+++|+|+++|++|+|. ++|.++.++..+
T Consensus 78 ~~~~~yg~~--~~~L~~l~-~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~G~~l~~~~~~ 154 (590)
T PRK13409 78 EPVHRYGVN--GFKLYGLP-IPKEGKVTGILGPNGIGKTTAVKILSGELIPNLGDYEEEPSWDEVLKRFRGTELQNYFKK 154 (590)
T ss_pred CceEEecCC--ceeEecCC-cCCCCCEEEEECCCCCCHHHHHHHHhCCccCCCccccCCCcHHHHHHHhCChHHHHHHHH
Confidence 478999632 35899999 9999999999999999999999999999999999997 899887654321
Q ss_pred --HHhhh----eeEEccCCCcccccHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHH
Q 001438 455 --WLRQQ----IGLVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQR 528 (1077)
Q Consensus 455 --~~r~~----i~~v~Q~~~lf~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqr 528 (1077)
..+.+ ++|++|.|.+|.+|++||+.... ..+++.+.+ +.+ |++........+||||||||
T Consensus 155 ~~~~~~~~~~~~q~~~~~p~~~~~tv~e~l~~~~---~~~~~~~~l---------~~l--~l~~~~~~~~~~LSgGe~qr 220 (590)
T PRK13409 155 LYNGEIKVVHKPQYVDLIPKVFKGKVRELLKKVD---ERGKLDEVV---------ERL--GLENILDRDISELSGGELQR 220 (590)
T ss_pred HhccCcceeecccchhhhhhhhcchHHHHHHhhh---HHHHHHHHH---------HHc--CCchhhcCChhhCCHHHHHH
Confidence 11123 44555567778889999996421 111122222 122 23333455667899999999
Q ss_pred HHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEccCchhHhh-cCEEEEEECC
Q 001438 529 IAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRN-ADVIAVVQGR 594 (1077)
Q Consensus 529 i~lARal~~~p~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~vtH~~~~~~~-~d~i~~l~~G 594 (1077)
++||||++++|++|||||||++||+.+...+.+.|+++.+++|+|+|||+++.+.. ||+|++|+++
T Consensus 221 v~ia~al~~~p~lllLDEPts~LD~~~~~~l~~~i~~l~~g~tvIivsHd~~~l~~~~D~v~vl~~~ 287 (590)
T PRK13409 221 VAIAAALLRDADFYFFDEPTSYLDIRQRLNVARLIRELAEGKYVLVVEHDLAVLDYLADNVHIAYGE 287 (590)
T ss_pred HHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCC
Confidence 99999999999999999999999999999999999987568999999999999876 9999999763
|
|
| >PRK10535 macrolide transporter ATP-binding /permease protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-36 Score=366.47 Aligned_cols=219 Identities=32% Similarity=0.489 Sum_probs=186.1
Q ss_pred cEEEEeEEEEcCCCC-CcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHHH---
Q 001438 381 HIEFKDVSFCYPSRP-DVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWL--- 456 (1077)
Q Consensus 381 ~i~~~~v~~~y~~~~-~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~--- 456 (1077)
.++++|++++|++.. .+++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.+||+++...+.+++
T Consensus 4 ~l~~~nl~~~y~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~ 83 (648)
T PRK10535 4 LLELKDIRRSYPSGEEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATLDADALAQL 83 (648)
T ss_pred EEEEeeEEEEeCCCCCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEcCcCCHHHHHHH
Confidence 489999999996421 2468999999999999999999999999999999999999999999999999998876653
Q ss_pred -hhheeEEccCCCcccc-cHHHHHhcCCCC--CCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHH
Q 001438 457 -RQQIGLVNQEPALFAT-TIRENILYGKDD--ATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAIS 532 (1077)
Q Consensus 457 -r~~i~~v~Q~~~lf~~-ti~~ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lA 532 (1077)
|+.++|++|++.+|+. |+.||+.++... ...++.. ....+.++.+ |++..+...+.+||||||||++||
T Consensus 84 ~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~-----~~~~~~l~~l--gl~~~~~~~~~~LS~Gq~qrv~LA 156 (648)
T PRK10535 84 RREHFGFIFQRYHLLSHLTAAQNVEVPAVYAGLERKQRL-----LRAQELLQRL--GLEDRVEYQPSQLSGGQQQRVSIA 156 (648)
T ss_pred HhccEEEEeCCcccCCCCCHHHHHHHHHHHcCCCHHHHH-----HHHHHHHHHC--CChhhhcCCcccCCHHHHHHHHHH
Confidence 5689999999999975 999999864311 1111111 1122333333 555667777889999999999999
Q ss_pred HHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCeEEEEccCchhHhhcCEEEEEECCEEEEecChhHHh
Q 001438 533 RAIVKNPSILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLSTIRNADVIAVVQGRKIVKTGSHEELI 606 (1077)
Q Consensus 533 Ral~~~p~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~vtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~ 606 (1077)
||++++|+++||||||++||+.+.+.+.+.|+++. +++|+|++||+++.++.||++++|++|+++++|+.+|..
T Consensus 157 raL~~~P~lLllDEP~~gLD~~s~~~l~~ll~~l~~~g~tilivsH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 231 (648)
T PRK10535 157 RALMNGGQVILADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVTHDPQVAAQAERVIEIRDGEIVRNPPAQEKV 231 (648)
T ss_pred HHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHhCCEEEEEECCEEEeecCccccc
Confidence 99999999999999999999999999999998875 589999999999998889999999999999999999875
|
|
| >COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-36 Score=330.68 Aligned_cols=211 Identities=29% Similarity=0.498 Sum_probs=177.9
Q ss_pred cEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCH-HHHhhh
Q 001438 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDL-KWLRQQ 459 (1077)
Q Consensus 381 ~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~-~~~r~~ 459 (1077)
.++++++++.|| ...+++||||+|++||+.|++|+||+|||||+++|.|+|+|++|+|++||++++-.++ +..|..
T Consensus 4 ~l~~~~itK~f~---~~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~~GeI~v~G~~v~~~sP~dA~~~G 80 (501)
T COG3845 4 ALEMRGITKRFP---GVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEVRIKSPRDAIRLG 80 (501)
T ss_pred eEEEeccEEEcC---CEEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcccCCcceEEECCEEeccCCHHHHHHcC
Confidence 589999999998 3568999999999999999999999999999999999999999999999999986665 456778
Q ss_pred eeEEccCCCcccc-cHHHHHhcCCCCC-----CHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHH
Q 001438 460 IGLVNQEPALFAT-TIRENILYGKDDA-----TMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISR 533 (1077)
Q Consensus 460 i~~v~Q~~~lf~~-ti~~ni~~~~~~~-----~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lAR 533 (1077)
||.|.|++.|++. |+.|||.+|.+.. +..+..+ +...+.+ . .|++-...++...||-|||||+.|-+
T Consensus 81 IGMVhQHF~Lv~~lTV~ENiiLg~e~~~~~~~~~~~~~~--~i~~l~~---~--yGl~vdp~~~V~dLsVG~qQRVEIlK 153 (501)
T COG3845 81 IGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARA--RIKELSE---R--YGLPVDPDAKVADLSVGEQQRVEILK 153 (501)
T ss_pred CcEEeeccccccccchhhhhhhcCccccccccCHHHHHH--HHHHHHH---H--hCCCCCccceeecCCcchhHHHHHHH
Confidence 9999999999977 9999999998532 2222221 1111111 1 13333344555689999999999999
Q ss_pred HhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCeEEEEccCchhHhh-cCEEEEEECCEEEEecC
Q 001438 534 AIVKNPSILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGS 601 (1077)
Q Consensus 534 al~~~p~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~g~ 601 (1077)
|||++|++||||||||-|-|...+.+.+.++++. .|+|+|+|||+++.+.. |||+-||.+|+++..-+
T Consensus 154 aLyr~a~iLILDEPTaVLTP~E~~~lf~~l~~l~~~G~tIi~ITHKL~Ev~~iaDrvTVLR~Gkvvgt~~ 223 (501)
T COG3845 154 ALYRGARLLILDEPTAVLTPQEADELFEILRRLAAEGKTIIFITHKLKEVMAIADRVTVLRRGKVVGTVD 223 (501)
T ss_pred HHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhhCeeEEEeCCeEEeeec
Confidence 9999999999999999999999999999999875 69999999999999876 99999999999876544
|
|
| >TIGR01166 cbiO cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-36 Score=314.69 Aligned_cols=178 Identities=31% Similarity=0.523 Sum_probs=143.7
Q ss_pred cccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCC--CCHHHHhhheeEEccCC--Ccccc
Q 001438 397 VAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKG--LDLKWLRQQIGLVNQEP--ALFAT 472 (1077)
Q Consensus 397 ~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~--~~~~~~r~~i~~v~Q~~--~lf~~ 472 (1077)
..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++.. .....+++.++|++|+| .+|+.
T Consensus 5 ~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~ 84 (190)
T TIGR01166 5 PEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQLFAA 84 (190)
T ss_pred cceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceeEEECCEEccccccchHHHHhhEEEEecChhhccccc
Confidence 458999999999999999999999999999999999999999999999999852 23446678899999998 47778
Q ss_pred cHHHHHhcCCC--CCCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHHhccCCCEEEEeCcCCC
Q 001438 473 TIRENILYGKD--DATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSA 550 (1077)
Q Consensus 473 ti~~ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~~~p~illlDEpts~ 550 (1077)
|++||+.++.. ..+.++..+. .... ++.+ |++........+||||||||++||||++.+|+++||||||++
T Consensus 85 tv~~nl~~~~~~~~~~~~~~~~~--~~~~---l~~~--~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~ 157 (190)
T TIGR01166 85 DVDQDVAFGPLNLGLSEAEVERR--VREA---LTAV--GASGLRERPTHCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAG 157 (190)
T ss_pred cHHHHHHHHHHHcCCCHHHHHHH--HHHH---HHHc--CchhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccc
Confidence 99999987531 1222222111 1111 1111 233334556678999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHh-CCCeEEEEccCchh
Q 001438 551 LDAESENSVQEALDRVM-VGRTTVVVAHRLST 581 (1077)
Q Consensus 551 lD~~~~~~i~~~l~~~~-~~~t~i~vtH~~~~ 581 (1077)
||+.+.+.+.+.|+++. +++|+|++||+++.
T Consensus 158 LD~~~~~~~~~~l~~~~~~~~tili~sH~~~~ 189 (190)
T TIGR01166 158 LDPAGREQMLAILRRLRAEGMTVVISTHDVDL 189 (190)
T ss_pred CCHHHHHHHHHHHHHHHHcCCEEEEEeecccc
Confidence 99999999999998874 48899999999864
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux. |
| >TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-36 Score=320.39 Aligned_cols=189 Identities=23% Similarity=0.455 Sum_probs=153.8
Q ss_pred EEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHHHhhheeEEccCCCc---ccccHHHHHhcC
Q 001438 405 LDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIGLVNQEPAL---FATTIRENILYG 481 (1077)
Q Consensus 405 l~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l---f~~ti~~ni~~~ 481 (1077)
|++++||+++|+||||||||||+++|+|+++|++|+|.+||+++. ..+++++|+||++.+ ++.|++||+.++
T Consensus 1 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~-----~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~ 75 (223)
T TIGR03771 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPG-----KGWRHIGYVPQRHEFAWDFPISVAHTVMSG 75 (223)
T ss_pred CccCCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCccch-----HhhCcEEEecccccccCCCCccHHHHHHhc
Confidence 578999999999999999999999999999999999999998763 346789999999876 457999999875
Q ss_pred CCC-------CCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHHhccCCCEEEEeCcCCCCCHH
Q 001438 482 KDD-------ATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAE 554 (1077)
Q Consensus 482 ~~~-------~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~~~p~illlDEpts~lD~~ 554 (1077)
... ...+...++ ..+.+.+ |++........+||||||||++||||++.+|+++||||||++||+.
T Consensus 76 ~~~~~~~~~~~~~~~~~~~---~~~l~~~-----~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llilDEP~~~LD~~ 147 (223)
T TIGR03771 76 RTGHIGWLRRPCVADFAAV---RDALRRV-----GLTELADRPVGELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMP 147 (223)
T ss_pred cccccccccCCcHHHHHHH---HHHHHHh-----CCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHH
Confidence 310 111111111 1111211 2223344556689999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHh-CCCeEEEEccCchhHhh-cCEEEEEECCEEEEecChhHHhc
Q 001438 555 SENSVQEALDRVM-VGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELIS 607 (1077)
Q Consensus 555 ~~~~i~~~l~~~~-~~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~ 607 (1077)
+++.+.+.|+++. +++|+|++||+++.+.. ||+|+++ +|++++.|+++++.+
T Consensus 148 ~~~~l~~~l~~~~~~~~tvii~sH~~~~~~~~~d~i~~l-~G~i~~~~~~~~~~~ 201 (223)
T TIGR03771 148 TQELLTELFIELAGAGTAILMTTHDLAQAMATCDRVVLL-NGRVIADGTPQQLQD 201 (223)
T ss_pred HHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEE-CCEEEeecCHHHhcC
Confidence 9999999998875 58899999999998865 9999999 899999999999865
|
This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown. |
| >TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-33 Score=343.90 Aligned_cols=389 Identities=12% Similarity=0.015 Sum_probs=307.8
Q ss_pred HHHHHhhcccchH-----HHHHHHHHHHHHhhHHhHHHHHHHHHHHhhccCch-hhHHHHHHHHHHHHHHHHHHHHHHHH
Q 001438 684 AIKLYSMVRPDWT-----YGVCGTICAIIAGAQMPLFALGVSQALVAYYMDWD-TTQREVKKITILFCCAAVITVIVHAI 757 (1077)
Q Consensus 684 ~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~ 757 (1077)
..+++++.+|||. ++.++.++.++........++..+.+++....... ........+.++++++.++..+..++
T Consensus 79 ~~~l~~~~~p~~~~~~~~~l~~~~~~~~~~t~~~l~~~~l~~~iid~l~~~~~~~f~~~l~~~~l~~~~~~~~~~~~~~~ 158 (659)
T TIGR00954 79 LDFLLKILIPRVFCKETGLLILIAFLLVSRTYLSVYVATLDGQIESSIVRRSPRNFAWILFKWFLIAPPASFINSAIKYL 158 (659)
T ss_pred HHHHHHHHcCcccchHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566788889886 46666666666667777788888888776543111 00011222334445555666677777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccccCCchhHHHHHhhcHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 001438 758 EHLSFGIMGERLTLRVREKMFSAILSNEIGWFDEMDNSSSILASRLESDATLLRTIVVDRSTILIQNFGLVTASFVIAFI 837 (1077)
Q Consensus 758 ~~~~~~~~~~~~~~~Lr~~l~~~llr~p~~FFD~~~~~~G~IlnR~s~D~~~i~~~l~~~l~~~~~~~~~~~~~i~i~~~ 837 (1077)
+.++......++..++|++.|++....+++||| +++|.+++|+++|++.+.+.+...+..++..++.+++.++.++.
T Consensus 159 ~~~~~~~~r~~l~~~l~~~~~~~~~~~~~~~~d---~~~g~~~srlt~Dv~~i~~~~~~~~~~l~~~~~~ii~~~~~L~~ 235 (659)
T TIGR00954 159 LKELKLRFRVRLTRYLYSKYLSGFTFYKVSNLD---SRIQNPDQLLTQDVEKFCDSVVELYSNLTKPILDVILYSFKLLT 235 (659)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCceEEeccCC---CCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 788888889999999999999999999999999 47899999999999999999999999999999999988887776
Q ss_pred -HhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhHHHHHHHcchHHHHHhcchHHHHHHHHHHhhhhhHHH
Q 001438 838 -LNWRITLVVVATYPLIISGHISEKLFFQGYGGNLSKAYLKANMLAAEAVSNIRTVAAFCSEDKVLELYSRELVEPSKRS 916 (1077)
Q Consensus 838 -~~w~l~l~~l~~~Pl~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Etl~Gi~tIrAf~~e~~~~~~f~~~~~~~~~~~ 916 (1077)
.+|++++++++.+|+.++...+..+.+.+...+.++...+.....+|.++|+++||+|+.|+.+.++|.+..++..+..
T Consensus 236 ~~~~~l~l~~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~I~~~~~e~~e~~~~~~~~~~l~~~~ 315 (659)
T TIGR00954 236 ALGSVGPAGLFAYLFATGVVLTKLRPPIGKLTVEEQALEGEYRYVHSRLIMNSEEIAFYQGNKVEKETVMSSFYRLVEHL 315 (659)
T ss_pred hcchHHHHHHHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhCCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999998888888888888889999999999999999999999999999999999999999999988
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHH-HHHHHHHHhh-c----CCCCHHHHHH-HHHH---HHHHHHHHHHHHhhhhhHHH
Q 001438 917 FIRGQIAGIFYGISQFFIFSS-YGL-ALWYGSVLMG-K----ELASFKSVMK-SFMV---LIVTALAMGETLALVPDLLK 985 (1077)
Q Consensus 917 ~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~g~~l~~-~----~~~~~~~~~~-~~~~---~~~~~~~~~~~~~~~~~~~~ 985 (1077)
.+.....+...++.+++.... ..+ .++.|...+. . |.++.+.+++ ++.+ +.....+++.+.....+++.
T Consensus 316 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~~~~~~~~~g~~t~g~~~~~f~~~~~~~~~l~~~~~~l~~~~~~i~~ 395 (659)
T TIGR00954 316 NLIIKFRFSYGFLDNIVAKYTWSAVGLVAVSIPIFDKTHPAFLEMSEEELMQEFYNNGRLLLKAADALGRLMLAGRDMTR 395 (659)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888887775432 222 2233332332 2 6788887766 3333 34557788999999999999
Q ss_pred HHHHHHHHHHHHcCCCCccC---------C--CC-------------cccccccccEEEeeeeeeCCCCCccccccccee
Q 001438 986 GNQMAASVFEVLDRKTQVIG---------D--IG-------------EELTNVEGTIELRGVHFSYPSRPEVVIFKDFNL 1041 (1077)
Q Consensus 986 ~~~a~~ri~~~l~~~~~~~~---------~--~~-------------~~~~~~~G~I~f~nVsf~Y~~~~~~~VLk~vsl 1041 (1077)
+..+.+|++++++.++++.. + .+ .......|.|+|+||+|+||++ .++|+|+||
T Consensus 396 ~~~~~~Ri~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nv~~~~~~~--~~il~~isl 473 (659)
T TIGR00954 396 LAGFTARVDTLLQVLDDVKSGNFKRPRVEEIESGREGGRNSNLVPGRGIVEYQDNGIKFENIPLVTPNG--DVLIESLSF 473 (659)
T ss_pred HHHHHHHHHHHHHHHHHHhcccccccccccccccccccccccccccccccccCCCeEEEEeeEEECCCC--CeeeecceE
Confidence 99999999999975433210 0 00 0011234679999999999743 258999999
Q ss_pred eeeCCCEEEEECCCCCCHHHHHHHHhhccCCCCCCC
Q 001438 1042 KVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKA 1077 (1077)
Q Consensus 1042 ~I~~GekVaIVGrTGsGKSTLi~lL~Rfyd~~~G~i 1077 (1077)
+|++||++|||||+|||||||+++|.|+|+|++|+|
T Consensus 474 ~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~~~~G~i 509 (659)
T TIGR00954 474 EVPSGNHLLICGPNGCGKSSLFRILGELWPVYGGRL 509 (659)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeE
Confidence 999999999999999999999999999999999975
|
|
| >TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-36 Score=357.99 Aligned_cols=217 Identities=18% Similarity=0.320 Sum_probs=173.2
Q ss_pred cEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCC-CccEEEECCeeCCCCCH-HHHhh
Q 001438 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEP-LSGEILLDGNNIKGLDL-KWLRQ 458 (1077)
Q Consensus 381 ~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~-~~G~i~~~g~~~~~~~~-~~~r~ 458 (1077)
.++++|++++|+...+..+|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|+++...+. ..+|+
T Consensus 257 ~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~~G~i~~~g~~~~~~~~~~~~~~ 336 (500)
T TIGR02633 257 ILEARNLTCWDVINPHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPVDIRNPAQAIRA 336 (500)
T ss_pred eEEEeCCcccccccccccccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCeEEEECCEECCCCCHHHHHhC
Confidence 58999999998432123589999999999999999999999999999999999995 89999999999865443 45678
Q ss_pred heeEEccCC---Ccccc-cHHHHHhcCCCC-C------CHHHHHHHHHHHhHHHHHhcCccchhh-hhcCCCCCCChHHH
Q 001438 459 QIGLVNQEP---ALFAT-TIRENILYGKDD-A------TMEEITRAAKLSEAMSFISNLPERFET-QVGERGIQLSGGQK 526 (1077)
Q Consensus 459 ~i~~v~Q~~---~lf~~-ti~~ni~~~~~~-~------~~~~~~~~~~~~~~~~~i~~l~~g~~t-~~~~~g~~LSgGqk 526 (1077)
+++|++|++ .+++. |++||+.++... . ..++.. .+. .+.++.+ |+.. ........||||||
T Consensus 337 ~i~~v~q~~~~~~l~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~--~~~---~~~l~~~--~l~~~~~~~~~~~LSgGqk 409 (500)
T TIGR02633 337 GIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAEL--QII---GSAIQRL--KVKTASPFLPIGRLSGGNQ 409 (500)
T ss_pred CCEEcCcchhhCCcCCCCCHHHHhcchhhhhhccCCcCCHHHHH--HHH---HHHHHhc--CccCCCccCccccCCHHHH
Confidence 899999996 46664 999999875311 0 111111 111 1223332 2221 23455678999999
Q ss_pred HHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCeEEEEccCchhHhh-cCEEEEEECCEEEEecChhH
Q 001438 527 QRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEE 604 (1077)
Q Consensus 527 qri~lARal~~~p~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~ 604 (1077)
||++||||++.+|++|||||||++||+.+.+.+.+.|+++. +|.|+|++||+++.+.. ||++++|++|+++..++.++
T Consensus 410 qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~~~~~~ 489 (500)
T TIGR02633 410 QKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQEGVAIIVVSSELAEVLGLSDRVLVIGEGKLKGDFVNHA 489 (500)
T ss_pred HHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEEcccc
Confidence 99999999999999999999999999999999999998864 58999999999999865 99999999999998775443
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). |
| >PRK09700 D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-35 Score=355.51 Aligned_cols=212 Identities=18% Similarity=0.323 Sum_probs=171.9
Q ss_pred cEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCH-HHHhhh
Q 001438 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDL-KWLRQQ 459 (1077)
Q Consensus 381 ~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~-~~~r~~ 459 (1077)
.++++|+++.|. .+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+. ..+|++
T Consensus 265 ~l~~~~l~~~~~-----~~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~ 339 (510)
T PRK09700 265 VFEVRNVTSRDR-----KKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRSPLDAVKKG 339 (510)
T ss_pred EEEEeCccccCC-----CcccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCEECCCCCHHHHHHCC
Confidence 599999998762 27999999999999999999999999999999999999999999999999866543 456778
Q ss_pred eeEEccCC---Ccccc-cHHHHHhcCCCC----C-------CHHHHHHHHHHHhHHHHHhcCccchh-hhhcCCCCCCCh
Q 001438 460 IGLVNQEP---ALFAT-TIRENILYGKDD----A-------TMEEITRAAKLSEAMSFISNLPERFE-TQVGERGIQLSG 523 (1077)
Q Consensus 460 i~~v~Q~~---~lf~~-ti~~ni~~~~~~----~-------~~~~~~~~~~~~~~~~~i~~l~~g~~-t~~~~~g~~LSg 523 (1077)
++|+||++ .+|+. |++||+.++... . ...+.. .+. .+.++.+ |+. ........+|||
T Consensus 340 i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~---~~~l~~~--~l~~~~~~~~~~~LSg 412 (510)
T PRK09700 340 MAYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQ--RTA---ENQRELL--ALKCHSVNQNITELSG 412 (510)
T ss_pred cEEccCccccCCCcCCCcHHHHhccccccccccccccccccChHHHH--HHH---HHHHHhc--CCCCCCccCccccCCh
Confidence 99999984 57765 999999876321 0 111111 111 1223222 232 224556678999
Q ss_pred HHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCeEEEEccCchhHhh-cCEEEEEECCEEEEecC
Q 001438 524 GQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGS 601 (1077)
Q Consensus 524 Gqkqri~lARal~~~p~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~g~ 601 (1077)
|||||++||||++.+|+||||||||++||+.+.+.+.+.|+++. +|+|+|+|||+++.+.. ||++++|++|++++.++
T Consensus 413 Gq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~~ 492 (510)
T PRK09700 413 GNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADDGKVILMVSSELPEIITVCDRIAVFCEGRLTQILT 492 (510)
T ss_pred HHHHHHHHHHHHhcCCCEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhhCCEEEEEECCEEEEEec
Confidence 99999999999999999999999999999999999999998864 58999999999998765 99999999999998886
Q ss_pred hhH
Q 001438 602 HEE 604 (1077)
Q Consensus 602 ~~~ 604 (1077)
..+
T Consensus 493 ~~~ 495 (510)
T PRK09700 493 NRD 495 (510)
T ss_pred Ccc
Confidence 533
|
|
| >TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-35 Score=333.25 Aligned_cols=190 Identities=37% Similarity=0.579 Sum_probs=156.0
Q ss_pred EEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHHHhhheeEEccCCCcccc-cHHHHHhcCCC--CCCHHHHH
Q 001438 415 LVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIGLVNQEPALFAT-TIRENILYGKD--DATMEEIT 491 (1077)
Q Consensus 415 ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~-ti~~ni~~~~~--~~~~~~~~ 491 (1077)
|+||||||||||+++|+|+++|++|+|.++|+++.+.+. .+++++|++|++.+|+. |++||+.++.. ..+.++..
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~p~~G~I~i~g~~i~~~~~--~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~ 78 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVPP--HLRHINMVFQSYALFPHMTVEENVAFGLKMRKVPRAEIK 78 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCH--HHCCEEEEecCccccCCCcHHHHHHHHHhhcCCCHHHHH
Confidence 689999999999999999999999999999999976654 35689999999999976 99999998642 11222211
Q ss_pred HHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh--CC
Q 001438 492 RAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVM--VG 569 (1077)
Q Consensus 492 ~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~~~p~illlDEpts~lD~~~~~~i~~~l~~~~--~~ 569 (1077)
+ +.... ++.+ |++........+||||||||++|||||+.+|+++||||||++||+.+++.+.+.|+++. .+
T Consensus 79 ~--~~~~~---l~~~--~l~~~~~~~~~~LSgGq~qRvalaraL~~~p~lllLDEP~s~LD~~~~~~l~~~l~~l~~~~g 151 (325)
T TIGR01187 79 P--RVLEA---LRLV--QLEEFADRKPHQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLG 151 (325)
T ss_pred H--HHHHH---HHHc--CCcchhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcC
Confidence 1 11112 2211 33344556677999999999999999999999999999999999999999999998874 37
Q ss_pred CeEEEEccCchhHhh-cCEEEEEECCEEEEecChhHHhcCCCchH
Q 001438 570 RTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELISNPNSAY 613 (1077)
Q Consensus 570 ~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~~~~~ 613 (1077)
+|+|+|||+++.+.. ||+|++|++|++++.|+++++..++...|
T Consensus 152 ~tiiivTHd~~e~~~~~d~i~vl~~G~i~~~g~~~~~~~~~~~~~ 196 (325)
T TIGR01187 152 ITFVFVTHDQEEAMTMSDRIAIMRKGKIAQIGTPEEIYEEPANLF 196 (325)
T ss_pred CEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCCCcHH
Confidence 999999999998765 99999999999999999999987655444
|
This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included). |
| >COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-36 Score=300.78 Aligned_cols=213 Identities=24% Similarity=0.456 Sum_probs=180.5
Q ss_pred cEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHHHhhhe
Q 001438 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQI 460 (1077)
Q Consensus 381 ~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i 460 (1077)
.+++++|+++|++ +.+++|+||++++|++.+++||||+||||.+++|+|+++|++|+|.++|.+++. ..+.+|
T Consensus 2 ~L~ie~vtK~Fg~---k~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle~~~G~I~~~g~~~~~----~~~~rI 74 (300)
T COG4152 2 ALEIEGVTKSFGD---KKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLSQ----EIKNRI 74 (300)
T ss_pred ceEEecchhccCc---eeeecceeeeecCCeEEEeecCCCCCccchHHHHhccCCccCceEEEcCcchhh----hhhhhc
Confidence 4789999999973 468999999999999999999999999999999999999999999999998864 356689
Q ss_pred eEEccCCCcccc-cHHHHHhcCCCC--CCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHHhcc
Q 001438 461 GLVNQEPALFAT-TIRENILYGKDD--ATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVK 537 (1077)
Q Consensus 461 ~~v~Q~~~lf~~-ti~~ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~~ 537 (1077)
||.|.+--|++. ||.|-+.|-... ...+++. .+ +..|++++.- --.-..+..+||-|.+|+|-+--|+++
T Consensus 75 GyLPEERGLy~k~tv~dql~yla~LkGm~~~e~~--~~---~~~wLer~~i--~~~~~~kIk~LSKGnqQKIQfisaviH 147 (300)
T COG4152 75 GYLPEERGLYPKMTVEDQLKYLAELKGMPKAEIQ--KK---LQAWLERLEI--VGKKTKKIKELSKGNQQKIQFISAVIH 147 (300)
T ss_pred ccChhhhccCccCcHHHHHHHHHHhcCCcHHHHH--HH---HHHHHHhccc--cccccchHHHhhhhhhHHHHHHHHHhc
Confidence 999999999976 999999875422 2222222 22 2233443321 112345667899999999999999999
Q ss_pred CCCEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCeEEEEccCchhHhh-cCEEEEEECCEEEEecChhHHhc
Q 001438 538 NPSILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELIS 607 (1077)
Q Consensus 538 ~p~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~ 607 (1077)
+|+++|||||+|+|||.+.+.+.+.+.+++ +|.|+|+.||+++.++. ||++++|++|+.|-+|+.+++.+
T Consensus 148 ePeLlILDEPFSGLDPVN~elLk~~I~~lk~~GatIifSsH~Me~vEeLCD~llmL~kG~~V~~G~v~~ir~ 219 (300)
T COG4152 148 EPELLILDEPFSGLDPVNVELLKDAIFELKEEGATIIFSSHRMEHVEELCDRLLMLKKGQTVLYGTVEDIRR 219 (300)
T ss_pred CCCEEEecCCccCCChhhHHHHHHHHHHHHhcCCEEEEecchHHHHHHHhhhhheecCCceEEeccHHHHHH
Confidence 999999999999999999999999998875 69999999999999987 99999999999999999999875
|
|
| >COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-32 Score=307.79 Aligned_cols=370 Identities=18% Similarity=0.197 Sum_probs=312.2
Q ss_pred HHHHHHHhhHHhHHHHHHHHHHHhhccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001438 702 TICAIIAGAQMPLFALGVSQALVAYYMDWDTTQREVKKITILFCCAAVITVIVHAIEHLSFGIMGERLTLRVREKMFSAI 781 (1077)
Q Consensus 702 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~Lr~~l~~~l 781 (1077)
.++.++.++......+++...+..++.... ......+...++++.++..+....+.-.....+.++...||.++++++
T Consensus 6 ~ll~~l~~i~~i~qa~llA~~l~~l~~~~~--~~~l~~~~~~l~~~~~lRa~l~~~~~~~~~~aa~~~~~~LR~~~l~~l 83 (559)
T COG4988 6 ALLAVLSGIAIIAQAALLADILTKLIEGQL--FQSLLPLLILLLIALVLRAFLAWLRERLGYRAAAKVRASLRQLVLDKL 83 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccc--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555556667777777766654221 122334455556666677788888888888899999999999999999
Q ss_pred HcCCccccccccCCchhHHHHHhhcHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 001438 782 LSNEIGWFDEMDNSSSILASRLESDATLLRTIVVDRSTILIQNFGLVTASFVIAFILNWRITLVVVATYPLIISGHISEK 861 (1077)
Q Consensus 782 lr~p~~FFD~~~~~~G~IlnR~s~D~~~i~~~l~~~l~~~~~~~~~~~~~i~i~~~~~w~l~l~~l~~~Pl~i~~~~~~~ 861 (1077)
.+.+..|-++ .|+|.+...++.-++.++..+...++.++.+.+..+..++.+++.+|.-+++++.+.|++.+++.+.+
T Consensus 84 ~~~gp~~~~~--~~~g~~atl~~egve~l~~Y~~ryLPq~~~~~ivp~~i~i~v~~~~w~aalIllit~PlIPlfMilvg 161 (559)
T COG4988 84 AKLGPAFIAQ--KPAGSAATLALEGIEQLEPYYARYLPQMFLSAIVPLLILIAIFFFNWAAALILLITAPLIPLFMILVG 161 (559)
T ss_pred HhCChhhhcC--CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999995 99999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhhHHHHHHHHhHHHHHHHcchHHHHHhcchHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001438 862 LFFQGYGGNLSKAYLKANMLAAEAVSNIRTVAAFCSEDKVLELYSRELVEPSKRSFIRGQIAGIFYGISQFFIFSSYGLA 941 (1077)
Q Consensus 862 ~~~~~~~~~~~~~~~~~~~~~~Etl~Gi~tIrAf~~e~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 941 (1077)
+.-+...++.-..+.+.++++-+.+.|+.|+|+|+..+...++..+..++..+..+..-+..=.-..+.+++.+.+.+++
T Consensus 162 ~~a~~~s~~~~~~~~~ls~~FLD~LrGL~TLr~f~~~~~~~~~i~~~se~fR~~TM~vLriAflSs~vLeffa~lsiAlv 241 (559)
T COG4988 162 LAAKDASEKQFSALARLSGHFLDRLRGLETLRAFGRTEATEERIRKDSEDFRKATMSVLRIAFLSSAVLEFFAYLSIALV 241 (559)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHhcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99888888888899999999999999999999999999999999999999998888766666666677888888999888
Q ss_pred HHHHHHHhhc-CCCCHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHcCCCCccCCCCc--ccccccccE
Q 001438 942 LWYGSVLMGK-ELASFKSVMKSFMVLIVTALAMGETLALVPDLLKGNQMAASVFEVLDRKTQVIGDIGE--ELTNVEGTI 1018 (1077)
Q Consensus 942 ~~~g~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~--~~~~~~G~I 1018 (1077)
..|.+..... |.++....+.++...--...|+..+.+.+.+-+.+..+++.++.+++.+.+....... ..+..+.+|
T Consensus 242 Av~~g~~ll~~G~ltl~~~l~~LiLAPEff~PlR~lGs~fH~~~~g~aa~d~i~~~l~~~~~~~~~~~~~~~~~~~~~ei 321 (559)
T COG4988 242 AVYIGFRLLGEGDLTLFAGLFVLILAPEFFQPLRDLGSFFHAAAAGEAAADKLFTLLESPVATPGSGEKAEVANEPPIEI 321 (559)
T ss_pred HHHHHHHHHccCCccHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhcCCCCCCCCccccccccCCCcee
Confidence 7777766666 7888877777777777788999999999999999999999999999987765443321 222234577
Q ss_pred EEeeeeeeCCCCCcccccccceeeeeCCCEEEEECCCCCCHHHHHHHHhhccCCCCCCC
Q 001438 1019 ELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKA 1077 (1077)
Q Consensus 1019 ~f~nVsf~Y~~~~~~~VLk~vsl~I~~GekVaIVGrTGsGKSTLi~lL~Rfyd~~~G~i 1077 (1077)
+++|++|+||+.+ ++++|+||+++|||++||||+||||||||+++|.+|..|++|+|
T Consensus 322 ~~~~l~~~y~~g~--~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~~~G~I 378 (559)
T COG4988 322 SLENLSFRYPDGK--PALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEI 378 (559)
T ss_pred eecceEEecCCCC--cccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCCCCceE
Confidence 7789999999764 57999999999999999999999999999999999999999986
|
|
| >PRK13541 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-35 Score=309.77 Aligned_cols=189 Identities=21% Similarity=0.375 Sum_probs=155.0
Q ss_pred EEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHHHhhhee
Q 001438 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIG 461 (1077)
Q Consensus 382 i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 461 (1077)
++++|++++|++ ..++ ++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.. ++.++
T Consensus 2 l~~~~l~~~~~~---~~l~-~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~----~~~~~ 73 (195)
T PRK13541 2 LSLHQLQFNIEQ---KNLF-DLSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINNIA----KPYCT 73 (195)
T ss_pred eEEEEeeEEECC---cEEE-EEEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCcccChhh----hhhEE
Confidence 689999999963 2355 599999999999999999999999999999999999999999999886532 34699
Q ss_pred EEccCCCc-ccccHHHHHhcCCCCC-CHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHHhccCC
Q 001438 462 LVNQEPAL-FATTIRENILYGKDDA-TMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNP 539 (1077)
Q Consensus 462 ~v~Q~~~l-f~~ti~~ni~~~~~~~-~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~~~p 539 (1077)
|++|++.+ ++.|++||+.+..... ..+++.++++.. |++......+.+||||||||++||||++++|
T Consensus 74 ~~~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~~~LS~G~~~rl~la~al~~~p 142 (195)
T PRK13541 74 YIGHNLGLKLEMTVFENLKFWSEIYNSAETLYAAIHYF-----------KLHDLLDEKCYSLSSGMQKIVAIARLIACQS 142 (195)
T ss_pred eccCCcCCCccCCHHHHHHHHHHhcccHHHHHHHHHHc-----------CCHhhhccChhhCCHHHHHHHHHHHHHhcCC
Confidence 99999865 5679999998754221 122222222222 2333345667899999999999999999999
Q ss_pred CEEEEeCcCCCCCHHHHHHHHHHHHHH-hCCCeEEEEccCchhHhhcCEEE
Q 001438 540 SILLLDEATSALDAESENSVQEALDRV-MVGRTTVVVAHRLSTIRNADVIA 589 (1077)
Q Consensus 540 ~illlDEpts~lD~~~~~~i~~~l~~~-~~~~t~i~vtH~~~~~~~~d~i~ 589 (1077)
+++||||||++||+.+.+.+.+.|+.. .+++|+|++||+++.++.||-+.
T Consensus 143 ~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~i~~~~~~~ 193 (195)
T PRK13541 143 DLWLLDEVETNLSKENRDLLNNLIVMKANSGGIVLLSSHLESSIKSAQILQ 193 (195)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCccccchhheec
Confidence 999999999999999999999999754 46899999999999999999763
|
|
| >COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-35 Score=291.90 Aligned_cols=206 Identities=27% Similarity=0.401 Sum_probs=175.3
Q ss_pred CcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHHHhhheeEEccCCC--cccc-
Q 001438 396 DVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIGLVNQEPA--LFAT- 472 (1077)
Q Consensus 396 ~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~--lf~~- 472 (1077)
++++|+++|++|++|+++.|+|.||||||||++.|.|-..|++|+|.|||+|++.++.......++-|+|||- .++.
T Consensus 18 ek~~l~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l~~t~G~I~Idg~dVtk~~~~~RA~~larVfQdp~~gt~~~l 97 (263)
T COG1101 18 EKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKKSVAKRANLLARVFQDPLAGTAPEL 97 (263)
T ss_pred HHHHHhcCceeecCCceEEEEcCCCccHHHHHHHhhCccccCCceEEECceecccCCHHHHhhHHHHHhcchhhCCcccc
Confidence 4579999999999999999999999999999999999999999999999999999999888888999999996 4544
Q ss_pred cHHHHHhcCCCC---CCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHHhccCCCEEEEeCcCC
Q 001438 473 TIRENILYGKDD---ATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATS 549 (1077)
Q Consensus 473 ti~~ni~~~~~~---~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~~~p~illlDEpts 549 (1077)
||.||+.+.... .........-......+.+..++.|++-.++.+..-|||||||-++|+.|.++.|+||+|||-|+
T Consensus 98 TieENl~la~~Rg~~rgl~~~ln~~~~~~f~~~l~~l~lgLenrL~~~iglLSGGQRQalsL~MAtl~~pkiLLLDEHTA 177 (263)
T COG1101 98 TIEENLALAESRGKKRGLSSALNERRRSSFRERLARLGLGLENRLSDRIGLLSGGQRQALSLLMATLHPPKILLLDEHTA 177 (263)
T ss_pred cHHHHHHHHHhcCcccccchhhhHHHHHHHHHHHhhcccchhhhhcChhhhccchHHHHHHHHHHhcCCCcEEEecchhh
Confidence 999999875311 11111122223333445577889999999998888999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHH--hCCCeEEEEccCchhH-hhcCEEEEEECCEEEEecC
Q 001438 550 ALDAESENSVQEALDRV--MVGRTTVVVAHRLSTI-RNADVIAVVQGRKIVKTGS 601 (1077)
Q Consensus 550 ~lD~~~~~~i~~~l~~~--~~~~t~i~vtH~~~~~-~~~d~i~~l~~G~i~~~g~ 601 (1077)
||||.+...+++.-.+. ..+-|++||||+++.. .+.+|.++|++|+|+.+-+
T Consensus 178 ALDPkta~~vm~lT~kiV~~~klTtlMVTHnm~~Al~yG~RlImLh~G~IvlDv~ 232 (263)
T COG1101 178 ALDPKTAEFVMELTAKIVEEHKLTTLMVTHNMEDALDYGNRLIMLHSGKIVLDVT 232 (263)
T ss_pred cCCcchHHHHHHHHHHHHHhcCCceEEEeccHHHHHhhCCeEEEEeCCeEEEEcc
Confidence 99999999998877665 2467999999999975 6699999999999997643
|
|
| >KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-32 Score=306.17 Aligned_cols=420 Identities=17% Similarity=0.173 Sum_probs=266.6
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001438 163 SAITSDIIVVQDALSEKVGNFMHYISRFLGGFIIGFARVWQISLVTLSI-VPLIALAGGMYAYVTIGLIARVRKSYVKAG 241 (1077)
Q Consensus 163 ~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~l~~-~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (1077)
.|++.|++++-..+.+....++...+.++.-...++....+++.+.+.. +.+-.++...+.+.+.+...+.++..++..
T Consensus 186 QrltqDv~kf~~~l~sl~s~l~~a~~di~~Y~~~l~~s~g~~gp~~i~~Yf~~~~vi~~~L~~pI~~l~~~qeklEGdfR 265 (659)
T KOG0060|consen 186 QRLTQDVEKFCRQLSSLYSNLLKAPFDLVYYTFRLFESAGWLGPVSIFAYFLIGTVINKTLRGPIVKLTVEQEKLEGDFR 265 (659)
T ss_pred HHHhHHHHHHHHHHHHHHHhhhccceeeehhhhHHhhhcCcccHHHHHHHHHHHHHHHhhhccchhHHHHHHHHhhcchh
Confidence 4899999999887765444444433322221111111111112222211 111222223333333344444444444444
Q ss_pred HHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HhcccC
Q 001438 242 EIAEEVIGNVRTVQAFAGEDKAVKVYKEALSNTYKYGRKAGLAKGLGLGSMHCVLFLSWSLLVWYVSVVV----HKHISN 317 (1077)
Q Consensus 242 ~~~~E~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v----~~~~~~ 317 (1077)
-.-.+...|-..|..|+.++.+....+...++..+...+.-.++-....+..+.-++..++.....+.-+ ..+.++
T Consensus 266 y~h~rlr~NaE~iAFY~g~~~E~~~~~~~f~~Lv~~l~~l~~~r~~l~f~~n~~~Ylg~ilsy~vi~~p~Fs~h~y~~~s 345 (659)
T KOG0060|consen 266 YKHSRLRVNAEEIAFYRGGQVEHQRTDQRFRNLVQHLRELMSFRFWLGFIDNIFDYLGGILSYVVIAIPFFSGHVYDDLS 345 (659)
T ss_pred hheeeeeecchhhhhhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhheeeEEeeeeecccccCCcC
Confidence 4555777889999999999988877766666655544443322222111112221222111111000000 123455
Q ss_pred HHHHHHHHH----HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhccCcc-------------cc-cc-----cccC-C
Q 001438 318 GGESFTTML----NVVIAGLSLGQAAPDITAFIRAKAAAYPIFEMIERDTM-------------SK-AS-----SKTG-R 373 (1077)
Q Consensus 318 ~g~~~~~~~----~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~~~~-------------~~-~~-----~~~~-~ 373 (1077)
+..++..+. .++-+...++.+......+.+-..-..||-++.+.-.. +. +. ...+ .
T Consensus 346 ~aEL~~~i~~na~~~i~Li~~f~~l~~~~~~ls~lsGyt~Ri~el~~~l~d~~~~~~~~~~~~~~~~E~~~~l~~~~G~~ 425 (659)
T KOG0060|consen 346 PAELSGLISNNAFVFIYLISAFGRLVDLSRDLSRLSGYTHRIGELMEVLDDLSSGSQECTMEEEELGEAEWGLSLPPGSG 425 (659)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHHhccCCcchhhhhhhhhhhhhccCCCCCCc
Confidence 555554332 11222233344333334444444556777666532100 00 00 0000 1
Q ss_pred CCCCCcccEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCH
Q 001438 374 KLDKLSGHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDL 453 (1077)
Q Consensus 374 ~~~~~~~~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~ 453 (1077)
+..+.+..|++++|++.-|++ +..+.+|+||+|+.|+.+.|+||||||||+|++.|.|+.+..+|++.--.+.-.
T Consensus 426 ~~~~~Dn~i~~e~v~l~tPt~-g~~lie~Ls~~V~~g~~LLItG~sG~GKtSLlRvlggLWp~~~G~l~k~~~~~~---- 500 (659)
T KOG0060|consen 426 KAEPADNAIEFEEVSLSTPTN-GDLLIENLSLEVPSGQNLLITGPSGCGKTSLLRVLGGLWPSTGGKLTKPTDGGP---- 500 (659)
T ss_pred ccccccceEEeeeeeecCCCC-CceeeeeeeeEecCCCeEEEECCCCCchhHHHHHHhcccccCCCeEEecccCCC----
Confidence 123344679999999998875 445678899999999999999999999999999999999999999976443211
Q ss_pred HHHhhheeEEccCCCcccccHHHHHhcCC-------CCCCHHHHHHHHHHHhHHHHHhcCccchhhhh-cCCCCCCChHH
Q 001438 454 KWLRQQIGLVNQEPALFATTIRENILYGK-------DDATMEEITRAAKLSEAMSFISNLPERFETQV-GERGIQLSGGQ 525 (1077)
Q Consensus 454 ~~~r~~i~~v~Q~~~lf~~ti~~ni~~~~-------~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~-~~~g~~LSgGq 525 (1077)
+.+-|+||.|+.-.||+||-+.|+. ...+++++.+.++.+++.+.++. .+|+|+.+ -+-...||+||
T Consensus 501 ----~~lfflPQrPYmt~GTLRdQvIYP~~~~~~~~~~~~d~~i~r~Le~v~L~hl~~r-~ggld~~~~~dW~dvLS~GE 575 (659)
T KOG0060|consen 501 ----KDLFFLPQRPYMTLGTLRDQVIYPLKAEDMDSKSASDEDILRILENVQLGHLLER-EGGLDQQVDWDWMDVLSPGE 575 (659)
T ss_pred ----CceEEecCCCCccccchhheeeccCccccccccCCCHHHHHHHHHHhhhhhHHHH-hCCCCchhhccHHhhcCHHH
Confidence 2489999999999999999999973 23567788888888777665543 45777554 35677899999
Q ss_pred HHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEccCchhHhhcCEEEEEECC
Q 001438 526 KQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRNADVIAVVQGR 594 (1077)
Q Consensus 526 kqri~lARal~~~p~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~vtH~~~~~~~~d~i~~l~~G 594 (1077)
+||+|.||-+|.+|++-+|||+|||+|.+.|..+.+.+++. |.|.|-|.||-+.-+.=|.++-|+.+
T Consensus 576 qQRLa~ARLfy~kPk~AiLDE~TSAv~~dvE~~~Yr~~r~~--giT~iSVgHRkSL~kfHd~~L~~~g~ 642 (659)
T KOG0060|consen 576 QQRLAFARLFYHKPKFAILDECTSAVTEDVEGALYRKCREM--GITFISVGHRKSLWKFHDYVLRMDGR 642 (659)
T ss_pred HHHHHHHHHHhcCCceEEeechhhhccHHHHHHHHHHHHHc--CCeEEEeccHHHHHhhhhEEEEecCC
Confidence 99999999999999999999999999999999999888764 89999999999999999999999874
|
|
| >PRK10762 D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-35 Score=352.97 Aligned_cols=210 Identities=19% Similarity=0.343 Sum_probs=171.6
Q ss_pred cEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCH-HHHhhh
Q 001438 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDL-KWLRQQ 459 (1077)
Q Consensus 381 ~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~-~~~r~~ 459 (1077)
.++++|+++ .+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+. +.+|++
T Consensus 257 ~l~~~~l~~--------~~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~p~~G~I~~~g~~i~~~~~~~~~~~~ 328 (501)
T PRK10762 257 RLKVDNLSG--------PGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSPQDGLANG 328 (501)
T ss_pred EEEEeCccc--------CCcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHHCC
Confidence 589999984 26999999999999999999999999999999999999999999999999977654 345678
Q ss_pred eeEEccCC---Cccc-ccHHHHHhcCCCC--------CCHHHHHHHHHHHhHHHHHhcCccchh-hhhcCCCCCCChHHH
Q 001438 460 IGLVNQEP---ALFA-TTIRENILYGKDD--------ATMEEITRAAKLSEAMSFISNLPERFE-TQVGERGIQLSGGQK 526 (1077)
Q Consensus 460 i~~v~Q~~---~lf~-~ti~~ni~~~~~~--------~~~~~~~~~~~~~~~~~~i~~l~~g~~-t~~~~~g~~LSgGqk 526 (1077)
+||+||+| .++. .|++||+.++... ...++.. .+ ..+.++.+ |+. ........+||||||
T Consensus 329 i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~--~~---~~~~l~~~--~l~~~~~~~~~~~LSgGek 401 (501)
T PRK10762 329 IVYISEDRKRDGLVLGMSVKENMSLTALRYFSRAGGSLKHADEQ--QA---VSDFIRLF--NIKTPSMEQAIGLLSGGNQ 401 (501)
T ss_pred CEEecCccccCCCcCCCcHHHHhhhhhhhhhcccccccCHHHHH--HH---HHHHHHhc--CCCCCCccCchhhCCHHHH
Confidence 99999997 4665 5999999875310 0111111 11 11223322 221 234566778999999
Q ss_pred HHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCeEEEEccCchhHhh-cCEEEEEECCEEEEecChhH
Q 001438 527 QRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEE 604 (1077)
Q Consensus 527 qri~lARal~~~p~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~ 604 (1077)
||++||||++.+|++|||||||++||+.+.+.+.+.|+++. +|+|+|++||+++.+.. ||+|++|++|+++..|+.++
T Consensus 402 qrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~~~~~~ 481 (501)
T PRK10762 402 QKVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKAEGLSIILVSSEMPEVLGMSDRILVMHEGRISGEFTREQ 481 (501)
T ss_pred HHHHHHHHHhhCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhhCCEEEEEECCEEEEEecccc
Confidence 99999999999999999999999999999999999998874 58999999999999865 99999999999999998776
Q ss_pred H
Q 001438 605 L 605 (1077)
Q Consensus 605 l 605 (1077)
+
T Consensus 482 ~ 482 (501)
T PRK10762 482 A 482 (501)
T ss_pred C
Confidence 4
|
|
| >PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-34 Score=348.04 Aligned_cols=212 Identities=21% Similarity=0.337 Sum_probs=171.7
Q ss_pred cEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCH-HHHhhh
Q 001438 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDL-KWLRQQ 459 (1077)
Q Consensus 381 ~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~-~~~r~~ 459 (1077)
.++++|+++. .+++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+. ...|+.
T Consensus 257 ~l~~~~~~~~-------~~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~ 329 (501)
T PRK11288 257 RLRLDGLKGP-------GLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDIRSPRDAIRAG 329 (501)
T ss_pred EEEEeccccC-------CcccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCcCCCceEEECCEECCCCCHHHHHhCC
Confidence 5889999742 37999999999999999999999999999999999999999999999999875443 345678
Q ss_pred eeEEccCCC---ccc-ccHHHHHhcCCCCC--------CHHHHHHHHHHHhHHHHHhcCccchh-hhhcCCCCCCChHHH
Q 001438 460 IGLVNQEPA---LFA-TTIRENILYGKDDA--------TMEEITRAAKLSEAMSFISNLPERFE-TQVGERGIQLSGGQK 526 (1077)
Q Consensus 460 i~~v~Q~~~---lf~-~ti~~ni~~~~~~~--------~~~~~~~~~~~~~~~~~i~~l~~g~~-t~~~~~g~~LSgGqk 526 (1077)
++|+||++. +|+ .|+.||+.++.... ...+..+ + ..+.++.+ |++ ........+||||||
T Consensus 330 i~~~~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~--~---~~~~l~~~--~l~~~~~~~~~~~LSgGq~ 402 (501)
T PRK11288 330 IMLCPEDRKAEGIIPVHSVADNINISARRHHLRAGCLINNRWEAE--N---ADRFIRSL--NIKTPSREQLIMNLSGGNQ 402 (501)
T ss_pred CEEcCcCHhhCCCcCCCCHHHHhccccchhhcccccccChHHHHH--H---HHHHHHhc--CcccCCccCccccCCHHHH
Confidence 999999973 665 59999998753210 1111111 1 11223332 221 224455678999999
Q ss_pred HHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCeEEEEccCchhHhh-cCEEEEEECCEEEEecChhH
Q 001438 527 QRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEE 604 (1077)
Q Consensus 527 qri~lARal~~~p~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~ 604 (1077)
||++||||++.+|++|||||||++||+.+.+.+.+.|+++. .|.|+|+|||+++.+.. ||++++|++|++++.|+++|
T Consensus 403 qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~~~~~d~i~~l~~g~i~~~~~~~~ 482 (501)
T PRK11288 403 QKAILGRWLSEDMKVILLDEPTRGIDVGAKHEIYNVIYELAAQGVAVLFVSSDLPEVLGVADRIVVMREGRIAGELAREQ 482 (501)
T ss_pred HHHHHHHHHccCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHhhCCEEEEEECCEEEEEEcccc
Confidence 99999999999999999999999999999999999998874 58999999999999865 99999999999999998876
Q ss_pred Hh
Q 001438 605 LI 606 (1077)
Q Consensus 605 l~ 606 (1077)
..
T Consensus 483 ~~ 484 (501)
T PRK11288 483 AT 484 (501)
T ss_pred CC
Confidence 53
|
|
| >cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-34 Score=286.84 Aligned_cols=143 Identities=36% Similarity=0.569 Sum_probs=133.9
Q ss_pred EEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHHHhhhee
Q 001438 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIG 461 (1077)
Q Consensus 382 i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 461 (1077)
++++|++++|++. ++++++||++++||+++|+||||||||||+++|+|+++|++|+|.++|+ +.++
T Consensus 1 l~~~~l~~~~~~~---~~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~-----------~~i~ 66 (144)
T cd03221 1 IELENLSKTYGGK---LLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGST-----------VKIG 66 (144)
T ss_pred CEEEEEEEEECCc---eEEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCe-----------EEEE
Confidence 4789999999642 5899999999999999999999999999999999999999999999994 3699
Q ss_pred EEccCCCcccccHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHHhccCCCE
Q 001438 462 LVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSI 541 (1077)
Q Consensus 462 ~v~Q~~~lf~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~~~p~i 541 (1077)
|++| ||+||+||++||||++++|++
T Consensus 67 ~~~~-------------------------------------------------------lS~G~~~rv~laral~~~p~i 91 (144)
T cd03221 67 YFEQ-------------------------------------------------------LSGGEKMRLALAKLLLENPNL 91 (144)
T ss_pred EEcc-------------------------------------------------------CCHHHHHHHHHHHHHhcCCCE
Confidence 9998 999999999999999999999
Q ss_pred EEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEccCchhHhh-cCEEEEEECCE
Q 001438 542 LLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRN-ADVIAVVQGRK 595 (1077)
Q Consensus 542 lllDEpts~lD~~~~~~i~~~l~~~~~~~t~i~vtH~~~~~~~-~d~i~~l~~G~ 595 (1077)
+||||||++||+.+...+.+.++++ ++|+|++||+++.+.. ||++++|++|+
T Consensus 92 lllDEP~~~LD~~~~~~l~~~l~~~--~~til~~th~~~~~~~~~d~v~~l~~g~ 144 (144)
T cd03221 92 LLLDEPTNHLDLESIEALEEALKEY--PGTVILVSHDRYFLDQVATKIIELEDGK 144 (144)
T ss_pred EEEeCCccCCCHHHHHHHHHHHHHc--CCEEEEEECCHHHHHHhCCEEEEEeCCC
Confidence 9999999999999999999999876 5799999999999865 99999999985
|
EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. |
| >TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-35 Score=380.76 Aligned_cols=217 Identities=23% Similarity=0.401 Sum_probs=180.1
Q ss_pred cEEEEeEEEEcCCC-CCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccC---CCccEEEECCeeCCCCCHHHH
Q 001438 381 HIEFKDVSFCYPSR-PDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYE---PLSGEILLDGNNIKGLDLKWL 456 (1077)
Q Consensus 381 ~i~~~~v~~~y~~~-~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~---~~~G~i~~~g~~~~~~~~~~~ 456 (1077)
.++++|++++|+.+ .++.+|+|+|+++++||++||+||||||||||+++|+|..+ |++|+|.+||+++. ..+
T Consensus 759 ~l~~~nl~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~----~~~ 834 (1394)
T TIGR00956 759 IFHWRNLTYEVKIKKEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLD----SSF 834 (1394)
T ss_pred eEEEEeeEEEecCCCCCcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECC----hhh
Confidence 47999999999632 23569999999999999999999999999999999999997 78899999999885 247
Q ss_pred hhheeEEccCCCcc-cccHHHHHhcCC----C-CCCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHH
Q 001438 457 RQQIGLVNQEPALF-ATTIRENILYGK----D-DATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIA 530 (1077)
Q Consensus 457 r~~i~~v~Q~~~lf-~~ti~~ni~~~~----~-~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~ 530 (1077)
|+++|||+|++.++ ..||+||+.++. + ..+.++..+ +..+..+.+ ++.+..|+.+|+.+.+||||||||++
T Consensus 835 ~~~i~yv~Q~~~~~~~~Tv~E~L~~~a~l~~~~~~~~~~~~~--~v~~~l~~l-~L~~~~d~~v~~~~~~LSgGqrqRl~ 911 (1394)
T TIGR00956 835 QRSIGYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKME--YVEEVIKLL-EMESYADAVVGVPGEGLNVEQRKRLT 911 (1394)
T ss_pred hcceeeecccccCCCCCCHHHHHHHHHHhCCCCCCCHHHHHH--HHHHHHHHc-CChhhCCCeeCCCCCCCCHHHhhHHH
Confidence 88899999997655 569999998753 1 122222211 112222222 35566788999888899999999999
Q ss_pred HHHHhccCCC-EEEEeCcCCCCCHHHHHHHHHHHHHH-hCCCeEEEEccCchhH--hhcCEEEEEECC-EEEEecChhH
Q 001438 531 ISRAIVKNPS-ILLLDEATSALDAESENSVQEALDRV-MVGRTTVVVAHRLSTI--RNADVIAVVQGR-KIVKTGSHEE 604 (1077)
Q Consensus 531 lARal~~~p~-illlDEpts~lD~~~~~~i~~~l~~~-~~~~t~i~vtH~~~~~--~~~d~i~~l~~G-~i~~~g~~~~ 604 (1077)
|||||+.+|+ ||+||||||+||+.++..+.+.|+++ .+|+|+|+++|+++.. +.+|++++|++| ++++.|+..+
T Consensus 912 Ia~aL~~~P~~iLlLDEPTsgLD~~~~~~i~~~L~~la~~g~tvI~t~H~~~~~~~~~~D~vl~L~~GG~iv~~G~~~~ 990 (1394)
T TIGR00956 912 IGVELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLADHGQAILCTIHQPSAILFEEFDRLLLLQKGGQTVYFGDLGE 990 (1394)
T ss_pred HHHHHHcCCCeEEEEcCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHhcCEEEEEcCCCEEEEECCccc
Confidence 9999999997 99999999999999999999999987 4689999999999963 569999999997 9999998754
|
|
| >PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-34 Score=346.60 Aligned_cols=211 Identities=18% Similarity=0.330 Sum_probs=171.1
Q ss_pred cEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHH-Hhhh
Q 001438 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKW-LRQQ 459 (1077)
Q Consensus 381 ~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~-~r~~ 459 (1077)
.++++|+++ .+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+... .|++
T Consensus 268 ~l~~~~l~~--------~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~ 339 (510)
T PRK15439 268 VLTVEDLTG--------EGFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQRLARG 339 (510)
T ss_pred eEEEeCCCC--------CCccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEECCCCCHHHHHhCC
Confidence 589999983 1589999999999999999999999999999999999999999999999998766554 4567
Q ss_pred eeEEccCC---Ccccc-cHHHHHhcCC----CC-CCHHHHHHHHHHHhHHHHHhcCccchh-hhhcCCCCCCChHHHHHH
Q 001438 460 IGLVNQEP---ALFAT-TIRENILYGK----DD-ATMEEITRAAKLSEAMSFISNLPERFE-TQVGERGIQLSGGQKQRI 529 (1077)
Q Consensus 460 i~~v~Q~~---~lf~~-ti~~ni~~~~----~~-~~~~~~~~~~~~~~~~~~i~~l~~g~~-t~~~~~g~~LSgGqkqri 529 (1077)
|+|+||++ .+|+. |+.||+.... .. ....+..+ + ..+.++.+ |+. .........||||||||+
T Consensus 340 i~~v~q~~~~~~l~~~~t~~~~l~~~~~~~~~~~~~~~~~~~--~---~~~~l~~~--~l~~~~~~~~~~~LSgG~kqrl 412 (510)
T PRK15439 340 LVYLPEDRQSSGLYLDAPLAWNVCALTHNRRGFWIKPARENA--V---LERYRRAL--NIKFNHAEQAARTLSGGNQQKV 412 (510)
T ss_pred cEECCCChhhCCccCCCcHHHHHHhhhhhhhccccChHHHHH--H---HHHHHHHc--CCCCCCccCccccCCcHHHHHH
Confidence 99999986 36665 9999985321 11 01111111 1 11223322 232 234556678999999999
Q ss_pred HHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCeEEEEccCchhHhh-cCEEEEEECCEEEEecChhHHh
Q 001438 530 AISRAIVKNPSILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELI 606 (1077)
Q Consensus 530 ~lARal~~~p~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~ 606 (1077)
+||||++.+|++|||||||++||+.+.+.+.+.|+++. +|+|+|+|||+++.+.. ||++++|++|+++..|+.+++.
T Consensus 413 ~la~al~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tiIivsHd~~~i~~~~d~i~~l~~G~i~~~~~~~~~~ 491 (510)
T PRK15439 413 LIAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSIAAQNVAVLFISSDLEEIEQMADRVLVMHQGEISGALTGAAIN 491 (510)
T ss_pred HHHHHHhhCCCEEEECCCCcCcChhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEEccccCC
Confidence 99999999999999999999999999999999998874 58999999999999875 9999999999999999887764
|
|
| >PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-34 Score=304.99 Aligned_cols=186 Identities=17% Similarity=0.233 Sum_probs=151.3
Q ss_pred cccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEE-ECCeeCCCCCHHHHhhheeEEccCCCcccc-cHHH
Q 001438 399 IFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEIL-LDGNNIKGLDLKWLRQQIGLVNQEPALFAT-TIRE 476 (1077)
Q Consensus 399 ~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~-~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~-ti~~ 476 (1077)
+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|. ++|..+ .+.|++.+|+. |++|
T Consensus 2 vl~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~sG~i~~~~~~~~-------------~~~~~~~l~~~ltv~e 68 (213)
T PRK15177 2 VLDKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGLDAPDEGDFIGLRGDAL-------------PLGANSFILPGLTGEE 68 (213)
T ss_pred eeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCCCEEEecCcee-------------ccccccccCCcCcHHH
Confidence 68999999999999999999999999999999999999999997 777532 13456778876 9999
Q ss_pred HHhcCCC--CCCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHHhccCCCEEEEeCcCCCCCHH
Q 001438 477 NILYGKD--DATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAE 554 (1077)
Q Consensus 477 ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~~~p~illlDEpts~lD~~ 554 (1077)
|+.+... ....++..+.+ .+ ...+++..++. ...||||||||++||||++.+|+++||||||+++|+.
T Consensus 69 nl~~~~~~~~~~~~~~~~~~-----~~-~~~l~~~~~~~----~~~lS~G~~qrv~la~al~~~p~llllDEP~~~lD~~ 138 (213)
T PRK15177 69 NARMMASLYGLDGDEFSHFC-----YQ-LTQLEQCYTDR----VSEYSVTMKTHLAFAINLLLPCRLYIADGKLYTGDNA 138 (213)
T ss_pred HHHHHHHHcCCCHHHHHHHH-----HH-HhChhHHhhch----HhhcCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHH
Confidence 9986432 22223322211 11 22344444444 4579999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCeEEEEccCchhHh-hcCEEEEEECCEEEEecChhHHhc
Q 001438 555 SENSVQEALDRVMVGRTTVVVAHRLSTIR-NADVIAVVQGRKIVKTGSHEELIS 607 (1077)
Q Consensus 555 ~~~~i~~~l~~~~~~~t~i~vtH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~ 607 (1077)
+++.+.+.+.+..+++|+|++||+++.+. .||++++|++|++++.|+.++..+
T Consensus 139 ~~~~~~~~l~~~~~~~~ii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 192 (213)
T PRK15177 139 TQLRMQAALACQLQQKGLIVLTHNPRLIKEHCHAFGVLLHGKITMCEDLAQATA 192 (213)
T ss_pred HHHHHHHHHHHHhhCCcEEEEECCHHHHHHhcCeeEEEECCeEEEeCCHHHHHH
Confidence 99999998866556789999999999986 599999999999999999888753
|
|
| >cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-34 Score=310.51 Aligned_cols=193 Identities=26% Similarity=0.400 Sum_probs=153.8
Q ss_pred EEcCCCCCcccccceeEEec-----CCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHHHhhheeEE
Q 001438 389 FCYPSRPDVAIFDKFCLDIP-----AGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIGLV 463 (1077)
Q Consensus 389 ~~y~~~~~~~~l~~isl~i~-----~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v 463 (1077)
|+|++. ...++|++|+++ +||+++|+||||||||||+++|+|+++|++|+|.++|. +|+|+
T Consensus 1 ~~y~~~--~~~~~~~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~p~~G~i~~~g~------------~i~~~ 66 (246)
T cd03237 1 YTYPTM--KKTLGEFTLEVEGGSISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELD------------TVSYK 66 (246)
T ss_pred CCCccc--ccccCcEEEEEecCCcCCCCEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCc------------eEEEe
Confidence 567643 247888888886 69999999999999999999999999999999999984 59999
Q ss_pred ccCCCc-ccccHHHHHhcCCCCC-C-HHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHHhccCCC
Q 001438 464 NQEPAL-FATTIRENILYGKDDA-T-MEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPS 540 (1077)
Q Consensus 464 ~Q~~~l-f~~ti~~ni~~~~~~~-~-~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~~~p~ 540 (1077)
||++.. ++.|++||+.+..... . .+...+. ++.+ |++........+||||||||++|||||+.+|+
T Consensus 67 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~---------l~~l--~l~~~~~~~~~~LSgGe~qrv~iaraL~~~p~ 135 (246)
T cd03237 67 PQYIKADYEGTVRDLLSSITKDFYTHPYFKTEI---------AKPL--QIEQILDREVPELSGGELQRVAIAACLSKDAD 135 (246)
T ss_pred cccccCCCCCCHHHHHHHHhhhccccHHHHHHH---------HHHc--CCHHHhhCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 999875 5789999997543211 1 1111111 2111 33444556677899999999999999999999
Q ss_pred EEEEeCcCCCCCHHHHHHHHHHHHHHh--CCCeEEEEccCchhHhh-cCEEEEEECCEEE--EecChhHHh
Q 001438 541 ILLLDEATSALDAESENSVQEALDRVM--VGRTTVVVAHRLSTIRN-ADVIAVVQGRKIV--KTGSHEELI 606 (1077)
Q Consensus 541 illlDEpts~lD~~~~~~i~~~l~~~~--~~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~--~~g~~~~l~ 606 (1077)
++||||||++||+.+...+.+.|+++. .++|+|+|||+++.+.. ||+|++|+++..+ ..+++.++.
T Consensus 136 llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiivsHd~~~~~~~~d~i~~l~~~~~~~~~~~~~~~~~ 206 (246)
T cd03237 136 IYLLDEPSAYLDVEQRLMASKVIRRFAENNEKTAFVVEHDIIMIDYLADRLIVFEGEPSVNGVANPPQSLR 206 (246)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEcCCCeeEEEeCCchHHH
Confidence 999999999999999999999999874 37999999999999875 9999999776443 445555543
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. |
| >COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-31 Score=293.93 Aligned_cols=326 Identities=20% Similarity=0.224 Sum_probs=241.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccccCCchhHHHHHhhcHHHHHHHHHhhHHHHHHHH
Q 001438 746 CAAVITVIVHAIEHLSFGIMGERLTLRVREKMFSAILSNEIGWFDEMDNSSSILASRLESDATLLRTIVVDRSTILIQNF 825 (1077)
Q Consensus 746 ~l~~~~~~~~~~~~~~~~~~~~~~~~~Lr~~l~~~llr~p~~FFD~~~~~~G~IlnR~s~D~~~i~~~l~~~l~~~~~~~ 825 (1077)
++++...+..+...+.......++..++|.++|+++.-.+..-.++ -++|+++||+..|+|.+|+..-..+...+..+
T Consensus 66 ~~aI~Rt~~RY~ERlvsH~AtfrvL~~lRv~~f~kl~p~sp~~~~r--~r~gdLL~RLvaDVd~Ld~lyLRvi~P~~~a~ 143 (573)
T COG4987 66 GLAILRTAARYVERLVSHDATFRVLSALRVRLFEKLEPLSPALLLR--YRSGDLLNRLVADVDALDNLYLRVIAPAVVAL 143 (573)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccCChHHHHh--cChHhHHHHHHhhHHHHhhHHHHHHhhHHHHH
Confidence 3455556666777777777788999999999999999998888885 78999999999999999999998888888888
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH-HHHHHHHHHhhhhhHHHHHHHHhHHHHHHHcchHHHHHhcchHHHHHH
Q 001438 826 GLVTASFVIAFILNWRITLVVVATYPLIISG-HISEKLFFQGYGGNLSKAYLKANMLAAEAVSNIRTVAAFCSEDKVLEL 904 (1077)
Q Consensus 826 ~~~~~~i~i~~~~~w~l~l~~l~~~Pl~i~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~Etl~Gi~tIrAf~~e~~~~~~ 904 (1077)
+...+..+...+.+|.+++.+....-+.++. -.++.++-++..+..........+.+.|-++|..-.+.||+++++.+.
T Consensus 144 ~~~~~~~i~L~f~~~~~Alll~~~ll~~lli~P~~~~~~~~~~~~~l~~~r~~lr~~~td~v~G~~EL~~~g~~~~~~~~ 223 (573)
T COG4987 144 VLIAVVTIGLSFFSIPLALLLGLILLLLLLIIPTLFYRAGRKFGAHLAQGRAALRSQFTDWVQGQAELLIFGAEDAYRTA 223 (573)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHcccHHHHHHH
Confidence 7777777777778887776655443333222 222233334444555555666667788999999999999999999999
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHH-hhhhh
Q 001438 905 YSRELVEPSKRSFIRGQIAGIFYGISQFFIFSSYG-LALWYGSVLMGKELASFKSVMKSFMVLIVTALAMGETL-ALVPD 982 (1077)
Q Consensus 905 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 982 (1077)
+.+..+...+.-.+.+...++.....+++...... ..+|.++ .+..|..+......+.+..+...-+...+. ..+.+
T Consensus 224 l~~~e~~~~~~q~k~~~~~~~~~a~~~l~~g~~v~~~l~w~a~-~~~~G~~~~~~aa~~ll~~f~~~eaf~~L~~~A~~~ 302 (573)
T COG4987 224 LEATEASWLKAQRKQARFTGLSDAILLLIAGLLVIGLLLWMAA-QVGAGALAQPGAALALLVIFAALEAFEPLAPGAFQH 302 (573)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcCCCcchhHHHHHHHHHHHHHHHHhhhcchhHHH
Confidence 99988888888888888888877777766655555 4455544 334455443222222222121222222222 34467
Q ss_pred HHHHHHHHHHHHHHHcCCCCccCCCCcccccccc-cEEEeeeeeeCCCCCcccccccceeeeeCCCEEEEECCCCCCHHH
Q 001438 983 LLKGNQMAASVFEVLDRKTQVIGDIGEELTNVEG-TIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKST 1061 (1077)
Q Consensus 983 ~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~~G-~I~f~nVsf~Y~~~~~~~VLk~vsl~I~~GekVaIVGrTGsGKST 1061 (1077)
..+...++.|+.++++.+++...+ .++.+ ..| .++++||+|+||+++ ++||+|+||++++||||||||||||||||
T Consensus 303 lgq~~~Sa~Rl~~i~~q~~e~~~~-~~~~~-~~~~~l~~~~vsF~y~~~~-~~~L~~~~l~l~~GEkvAIlG~SGsGKST 379 (573)
T COG4987 303 LGQVIASARRLNDILDQKPEVTFP-DEQTA-TTGQALELRNVSFTYPGQQ-TKALKNFNLTLAQGEKVAILGRSGSGKST 379 (573)
T ss_pred hhHHHHHHHHHhhhccCCcccCCC-ccccC-CccceeeeccceeecCCCc-cchhhccceeecCCCeEEEECCCCCCHHH
Confidence 788899999999999988877654 12221 222 899999999999764 46899999999999999999999999999
Q ss_pred HHHHHhhccCCCCCCC
Q 001438 1062 VLSLILRFYDPTAGKA 1077 (1077)
Q Consensus 1062 Li~lL~Rfyd~~~G~i 1077 (1077)
++++|.|-|||++|+|
T Consensus 380 llqLl~~~~~~~~G~i 395 (573)
T COG4987 380 LLQLLAGAWDPQQGSI 395 (573)
T ss_pred HHHHHHhccCCCCCee
Confidence 9999999999999986
|
|
| >PRK15064 ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-34 Score=344.93 Aligned_cols=202 Identities=24% Similarity=0.393 Sum_probs=167.0
Q ss_pred ccEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHHHhhh
Q 001438 380 GHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQ 459 (1077)
Q Consensus 380 ~~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~ 459 (1077)
..++++|++++|++ ..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|. ++
T Consensus 318 ~~l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~-----------~~ 383 (530)
T PRK15064 318 NALEVENLTKGFDN---GPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSEN-----------AN 383 (530)
T ss_pred ceEEEEeeEEeeCC---ceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCc-----------eE
Confidence 36999999999964 35899999999999999999999999999999999999999999999883 46
Q ss_pred eeEEccCCC--ccc-ccHHHHHhcCC-CCCCHHHHHHHHHHHhHHHHHhcCccch-hhhhcCCCCCCChHHHHHHHHHHH
Q 001438 460 IGLVNQEPA--LFA-TTIRENILYGK-DDATMEEITRAAKLSEAMSFISNLPERF-ETQVGERGIQLSGGQKQRIAISRA 534 (1077)
Q Consensus 460 i~~v~Q~~~--lf~-~ti~~ni~~~~-~~~~~~~~~~~~~~~~~~~~i~~l~~g~-~t~~~~~g~~LSgGqkqri~lARa 534 (1077)
+||++|++. +++ .|++||+.+.. .....+++.+.++ .+ |+ .........+||||||||++||||
T Consensus 384 i~~~~q~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~---------~~--~l~~~~~~~~~~~LSgGq~qrv~la~a 452 (530)
T PRK15064 384 IGYYAQDHAYDFENDLTLFDWMSQWRQEGDDEQAVRGTLG---------RL--LFSQDDIKKSVKVLSGGEKGRMLFGKL 452 (530)
T ss_pred EEEEcccccccCCCCCcHHHHHHHhccCCccHHHHHHHHH---------Hc--CCChhHhcCcccccCHHHHHHHHHHHH
Confidence 999999974 444 49999986432 1111222222222 22 12 123456677999999999999999
Q ss_pred hccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEccCchhHhh-cCEEEEEECCEEE-EecChhHHhcC
Q 001438 535 IVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRN-ADVIAVVQGRKIV-KTGSHEELISN 608 (1077)
Q Consensus 535 l~~~p~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~-~~g~~~~l~~~ 608 (1077)
++.+|++|||||||++||+.+.+.+.+.|++. +.|+|+|||+++.+.. ||+|++|++|+++ ..|+++++++.
T Consensus 453 l~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~~~~~~d~i~~l~~g~i~~~~g~~~~~~~~ 526 (530)
T PRK15064 453 MMQKPNVLVMDEPTNHMDMESIESLNMALEKY--EGTLIFVSHDREFVSSLATRIIEITPDGVVDFSGTYEEYLRS 526 (530)
T ss_pred HhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHhCCEEEEEECCeEEEcCCCHHHHHHH
Confidence 99999999999999999999999999999876 4599999999999875 9999999999998 78998887653
|
|
| >cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-34 Score=312.22 Aligned_cols=202 Identities=20% Similarity=0.288 Sum_probs=157.8
Q ss_pred EeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEE-----------ECCeeCCCCCH
Q 001438 385 KDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEIL-----------LDGNNIKGLDL 453 (1077)
Q Consensus 385 ~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~-----------~~g~~~~~~~~ 453 (1077)
.|++++|++. ..+|+|+| .+++||+++|+||||||||||+++|+|+++|++|+|. ++|+++.+...
T Consensus 4 ~~~~~~y~~~--~~~l~~i~-~i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~p~~G~I~~~~~~~~~~~~~~g~~~~~~~~ 80 (255)
T cd03236 4 DEPVHRYGPN--SFKLHRLP-VPREGQVLGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWDEILDEFRGSELQNYFT 80 (255)
T ss_pred cCcceeecCc--chhhhcCC-CCCCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEeeccccchhhhhccCchhhhhhH
Confidence 3688999632 35899999 4999999999999999999999999999999999996 88888866533
Q ss_pred HHHhh--heeEEccCCCcccccHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHH
Q 001438 454 KWLRQ--QIGLVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAI 531 (1077)
Q Consensus 454 ~~~r~--~i~~v~Q~~~lf~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~l 531 (1077)
...+. .++|++|++.+++.++.+|+.........+ ..+ . +.++.+ |++......+.+||||||||++|
T Consensus 81 ~~~~~~~~i~~~~~~~~~~~~~~~~~i~~~l~~~~~~--~~~---~---~~l~~~--gl~~~~~~~~~~LS~G~~qrv~l 150 (255)
T cd03236 81 KLLEGDVKVIVKPQYVDLIPKAVKGKVGELLKKKDER--GKL---D---ELVDQL--ELRHVLDRNIDQLSGGELQRVAI 150 (255)
T ss_pred HhhhcccceeeecchhccCchHHHHHHHHHhchhHHH--HHH---H---HHHHHc--CCchhhcCChhhCCHHHHHHHHH
Confidence 33332 478999988777666666665432111111 111 1 222222 34455667788999999999999
Q ss_pred HHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCeEEEEccCchhHhh-cCEEEEEECCEEEEec
Q 001438 532 SRAIVKNPSILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTG 600 (1077)
Q Consensus 532 ARal~~~p~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~g 600 (1077)
|||++.+|+++||||||++||+.+.+.+.+.|+++. +++|+|++||+++.+.. ||+|++|+ |++.+.|
T Consensus 151 aral~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~~~~tIIiiSHd~~~~~~~ad~i~~l~-~~~~~~~ 220 (255)
T cd03236 151 AAALARDADFYFFDEPSSYLDIKQRLNAARLIRELAEDDNYVLVVEHDLAVLDYLSDYIHCLY-GEPGAYG 220 (255)
T ss_pred HHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEC-CCCCcce
Confidence 999999999999999999999999999999998875 47999999999999875 99999994 5566544
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. |
| >COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-34 Score=287.74 Aligned_cols=211 Identities=29% Similarity=0.401 Sum_probs=174.6
Q ss_pred ccEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCH-HHHhh
Q 001438 380 GHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDL-KWLRQ 458 (1077)
Q Consensus 380 ~~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~-~~~r~ 458 (1077)
.-|+++||++.|.+ +++|+|+|++|++||..+|+||||||||||+++++|.++|++|.+.+.|+....-+. .++|+
T Consensus 30 ~li~l~~v~v~r~g---k~iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~pssg~~~~~G~~~G~~~~~~elrk 106 (257)
T COG1119 30 PLIELKNVSVRRNG---KKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGRRFGKGETIFELRK 106 (257)
T ss_pred ceEEecceEEEECC---EeeccccceeecCCCcEEEECCCCCCHHHHHHHHhcccCCCCCceeeeeeeccCCcchHHHHH
Confidence 45999999999974 469999999999999999999999999999999999999999999999999987776 89999
Q ss_pred heeEEccCCCc-c--cccHHHHHhcCC------C--CCCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHH
Q 001438 459 QIGLVNQEPAL-F--ATTIRENILYGK------D--DATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQ 527 (1077)
Q Consensus 459 ~i~~v~Q~~~l-f--~~ti~~ni~~~~------~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkq 527 (1077)
+||+|+-+-.. | +.+++|-+.-|. . ..+.++..++..+.+. + |.....+..-.+||-||||
T Consensus 107 ~IG~vS~~L~~~~~~~~~v~dvVlSg~~~siG~y~~~~~~~~~~~a~~lle~------~--g~~~la~r~~~~LS~Ge~r 178 (257)
T COG1119 107 RIGLVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLEL------L--GAKHLADRPFGSLSQGEQR 178 (257)
T ss_pred HhCccCHHHHhhcccccccceeeeecccccccccccCCCHHHHHHHHHHHHH------c--chhhhccCchhhcCHhHHH
Confidence 99999865321 2 447888776442 1 3344443333332221 1 3444455666789999999
Q ss_pred HHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh---CCCeEEEEccCchhHhh-cCEEEEEECCEEEEecC
Q 001438 528 RIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVM---VGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGS 601 (1077)
Q Consensus 528 ri~lARal~~~p~illlDEpts~lD~~~~~~i~~~l~~~~---~~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~g~ 601 (1077)
|+-|||||+.+|.+||||||+++||...++.+.+.|.++. .+.++|+|||+.+.+.. .++++.+++|+++.+|.
T Consensus 179 rvLiaRALv~~P~LLiLDEP~~GLDl~~re~ll~~l~~~~~~~~~~~ll~VtHh~eEi~~~~th~lll~~g~v~~~g~ 256 (257)
T COG1119 179 RVLIARALVKDPELLILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHHAEEIPPCFTHRLLLKEGEVVAQGK 256 (257)
T ss_pred HHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHhcCCCCceEEEEEcchhhcccccceEEEeeCCceeeccc
Confidence 9999999999999999999999999999999999998874 36899999999999865 79999999999998874
|
|
| >PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-34 Score=339.88 Aligned_cols=211 Identities=19% Similarity=0.339 Sum_probs=167.8
Q ss_pred cEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHH-HHhhh
Q 001438 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLK-WLRQQ 459 (1077)
Q Consensus 381 ~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~-~~r~~ 459 (1077)
.|+++|+++.| .++|+|+||+|++||+++|+||||||||||+++|+|+.+|++|+|.++|+++...+.. .+++.
T Consensus 250 ~i~~~~l~~~~-----~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~ 324 (491)
T PRK10982 250 ILEVRNLTSLR-----QPSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKINNHNANEAINHG 324 (491)
T ss_pred EEEEeCccccc-----CcccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCcCCccEEEECCEECCCCCHHHHHHCC
Confidence 58999999974 1489999999999999999999999999999999999999999999999999876643 35677
Q ss_pred eeEEccCC---Ccccc-cHHHHHhcC-----CCC---CCHHHHHHHHHHHhHHHHHhcCccchh-hhhcCCCCCCChHHH
Q 001438 460 IGLVNQEP---ALFAT-TIRENILYG-----KDD---ATMEEITRAAKLSEAMSFISNLPERFE-TQVGERGIQLSGGQK 526 (1077)
Q Consensus 460 i~~v~Q~~---~lf~~-ti~~ni~~~-----~~~---~~~~~~~~~~~~~~~~~~i~~l~~g~~-t~~~~~g~~LSgGqk 526 (1077)
++|+||++ .+|+. |+.+|+.+. ... ....+..+ + ..+.++.+ ++. ........+||||||
T Consensus 325 i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~---~~~~l~~~--~l~~~~~~~~~~~LSgGq~ 397 (491)
T PRK10982 325 FALVTEERRSTGIYAYLDIGFNSLISNIRNYKNKVGLLDNSRMKS--D---TQWVIDSM--RVKTPGHRTQIGSLSGGNQ 397 (491)
T ss_pred CEEcCCchhhCCcccCCcHHHheehhhhhhhcccccccCcHHHHH--H---HHHHHHhc--CccCCCcccccccCCcHHH
Confidence 99999996 35654 777663221 111 01111111 1 11223333 221 124566779999999
Q ss_pred HHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCeEEEEccCchhHhh-cCEEEEEECCEEEEecChh
Q 001438 527 QRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHE 603 (1077)
Q Consensus 527 qri~lARal~~~p~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~ 603 (1077)
||++||||++.+|+||||||||++||+.+.+.+.+.|+++. +++|+|++||+++.+.. ||++++|++|+++..++.+
T Consensus 398 qrv~la~al~~~p~illLDEPt~gLD~~~~~~~~~~l~~l~~~~~tvi~vsHd~~~~~~~~d~v~~l~~g~i~~~~~~~ 476 (491)
T PRK10982 398 QKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKKDKGIIIISSEMPELLGITDRILVMSNGLVAGIVDTK 476 (491)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCcccChhHHHHHHHHHHHHHHCCCEEEEECCChHHHHhhCCEEEEEECCEEEEEEccc
Confidence 99999999999999999999999999999999999998864 58999999999999865 9999999999999887654
|
|
| >COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-34 Score=271.12 Aligned_cols=226 Identities=24% Similarity=0.439 Sum_probs=176.6
Q ss_pred EEEEeEEEEcCCC------CCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHH
Q 001438 382 IEFKDVSFCYPSR------PDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKW 455 (1077)
Q Consensus 382 i~~~~v~~~y~~~------~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~ 455 (1077)
++++|+++.|..+ ....+.+.|||++++|+.+||+|.||||||||.++|.|..+|++|+|.+||+++.--+-..
T Consensus 5 LeV~nLsKtF~~~~~lf~r~~~~AV~~vSFtL~~~QTlaiIG~NGSGKSTLakMlaGmi~PTsG~il~n~~~L~~~Dy~~ 84 (267)
T COG4167 5 LEVRNLSKTFRYRTGLFRRQTVEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLHFGDYSF 84 (267)
T ss_pred hhhhhhhhhhhhhhhhhhhhhhhcccceEEEecCCcEEEEEccCCCcHhHHHHHHhcccCCCCceEEECCccccccchHh
Confidence 4667776665322 1234689999999999999999999999999999999999999999999999987666666
Q ss_pred HhhheeEEccCCCc-ccccHHHHH----hcCC-------CCCCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCCh
Q 001438 456 LRQQIGLVNQEPAL-FATTIRENI----LYGK-------DDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSG 523 (1077)
Q Consensus 456 ~r~~i~~v~Q~~~l-f~~ti~~ni----~~~~-------~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSg 523 (1077)
..++|-.++|||.- ||- |-|| ..+. +..+.+++.+.++++ .-+|+-.+- ....||-
T Consensus 85 R~k~IRMiFQDpnts~NP--Rl~iGqiLd~PL~l~T~~~~~~R~~~i~~TL~~V------GL~Pdhan~----~~~~la~ 152 (267)
T COG4167 85 RSKRIRMIFQDPNTSLNP--RLRIGQILDFPLRLNTDLEPEQRRKQIFETLRMV------GLLPDHANY----YPHMLAP 152 (267)
T ss_pred hhhheeeeecCCccccCh--hhhhhhHhcchhhhcccCChHHHHHHHHHHHHHh------ccCcccccc----chhhcCc
Confidence 66789999999952 432 2222 1111 112233444444443 446764332 4568999
Q ss_pred HHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHH--hCCCeEEEEccCchhHhh-cCEEEEEECCEEEEec
Q 001438 524 GQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRV--MVGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTG 600 (1077)
Q Consensus 524 Gqkqri~lARal~~~p~illlDEpts~lD~~~~~~i~~~l~~~--~~~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~g 600 (1077)
|||||+||||||+-+|+|+|.||+..+||...+.++.+...++ +.|..-|.|++++-.++. +|+|+||++|+++|.|
T Consensus 153 ~QKQRVaLARALIL~P~iIIaDeAl~~LD~smrsQl~NL~LeLQek~GiSyiYV~QhlG~iKHi~D~viVM~EG~vvE~G 232 (267)
T COG4167 153 GQKQRVALARALILRPKIIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHIGMIKHISDQVLVMHEGEVVERG 232 (267)
T ss_pred hhHHHHHHHHHHhcCCcEEEehhhhhhccHHHHHHHHHHHHHHHHHhCceEEEEechhhHhhhhcccEEEEecCceeecC
Confidence 9999999999999999999999999999999999998887665 358999999999999998 9999999999999999
Q ss_pred ChhHHhcCCCch-HHHHHHH
Q 001438 601 SHEELISNPNSA-YAALVQL 619 (1077)
Q Consensus 601 ~~~~l~~~~~~~-~~~~~~~ 619 (1077)
++.+++..|... -++++++
T Consensus 233 ~t~~v~a~P~~~~TkRlieS 252 (267)
T COG4167 233 STADVLASPLHELTKRLIES 252 (267)
T ss_pred ChhhhhcCCccHHHHHHHHH
Confidence 999999876533 3344443
|
|
| >KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-33 Score=301.15 Aligned_cols=321 Identities=16% Similarity=0.216 Sum_probs=250.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccccCCchhHHHHHhhcHHHHHHHHHhhHHHHHHHHHHHHHH
Q 001438 752 VIVHAIEHLSFGIMGERLTLRVREKMFSAILSNEIGWFDEMDNSSSILASRLESDATLLRTIVVDRSTILIQNFGLVTAS 831 (1077)
Q Consensus 752 ~~~~~~~~~~~~~~~~~~~~~Lr~~l~~~llr~p~~FFD~~~~~~G~IlnR~s~D~~~i~~~l~~~l~~~~~~~~~~~~~ 831 (1077)
+++.-+|.++...+.+...+++-.++|+|+......|.-. ..+|+.+.-+.+-.+.+. ++.....++...+.-+..+
T Consensus 273 G~~~nlRtfLWi~VqQyttR~ie~~lfrHlh~LSlrwHL~--rrtGeVLrvmdrGtssvt-ll~yvVF~i~PtllDl~va 349 (790)
T KOG0056|consen 273 GFLNNLRTFLWIPVQQYTTREIETELFRHLHNLSLRWHLN--RRTGEVLRVMDRGTSSVT-LLEYVVFQIGPTLLDLGVA 349 (790)
T ss_pred cchhhhheeEEEEhhHhHHHHHHHHHHHHHHhhceeeeec--ccccceeehhccCcchhh-HHHHHHhhcccHHHHhhhh
Confidence 4566678888888888999999999999999999999985 889999888888777766 5544444444444444444
Q ss_pred HHHHH-HHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhHHHHHHHcchHHHHHhcchHHHHHHHHHHhh
Q 001438 832 FVIAF-ILNWRITLVVVATYPLIISGHISEKLFFQGYGGNLSKAYLKANMLAAEAVSNIRTVAAFCSEDKVLELYSRELV 910 (1077)
Q Consensus 832 i~i~~-~~~w~l~l~~l~~~Pl~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Etl~Gi~tIrAf~~e~~~~~~f~~~~~ 910 (1077)
++--+ ..+|+.+++++.+..+.+.......-+..++.|+......+..+...+++-+-.||+-|++|+++.++|.+..+
T Consensus 350 ~vYF~~~Fn~wFgLIVfl~m~lY~~~Ti~iTeWRTk~rR~Mn~~~nesrAr~vDsllNFETVKyy~Ae~yEverYreAil 429 (790)
T KOG0056|consen 350 MVYFFIKFNIWFGLIVFLMMLLYCYVTIKITEWRTKARRKMNNSWNESRARQVDSLLNFETVKYYNAEDYEVERYREAIL 429 (790)
T ss_pred hhhhhhhHhHHHHHHHHHHHHHHhheeeeeehhhHHHHHHhhhhhhhhhhhhhhhhhcchhhhccCchhhhHHHHHHHHH
Confidence 44333 35777777665544433322111111111222333333334444556899999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHH
Q 001438 911 EPSKRSFIRGQIAGIFYGISQFFIFSSYGLALWYGSVLMGKELASFKSVMKSFMVLIVTALAMGETLALVPDLLKGNQMA 990 (1077)
Q Consensus 911 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 990 (1077)
..++..++......+.....+.++.++......+.++++..+..++|+++.+..+++...+|+.....++..+|+...-.
T Consensus 430 ~Yqk~E~ks~~sLnfLN~~Qn~Ii~lgll~gsll~aY~Vt~q~ltVGDfVlf~TYliqLy~PLN~FGT~YR~iQ~nfiDm 509 (790)
T KOG0056|consen 430 KYQKQEWKSLASLNFLNIVQNGIIGLGLLAGSLLCAYRVTEQTLTVGDFVLFLTYLIQLYMPLNFFGTYYRSIQKNFIDM 509 (790)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhHHhhhhheeeeeeeeccccccceehHHHHHHHHhCchHHHHHHHHHHHHhhhhH
Confidence 99999998877777777777777777766666666667778899999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCCCccCC-CCcccccccccEEEeeeeeeCCCCCcccccccceeeeeCCCEEEEECCCCCCHHHHHHHHhhc
Q 001438 991 ASVFEVLDRKTQVIGD-IGEELTNVEGTIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRF 1069 (1077)
Q Consensus 991 ~ri~~~l~~~~~~~~~-~~~~~~~~~G~I~f~nVsf~Y~~~~~~~VLk~vsl~I~~GekVaIVGrTGsGKSTLi~lL~Rf 1069 (1077)
|++|+++++++++.+. +..++...+|.|+|+||+|+|.+ .+|||+||||+++||++||+|||||+||||++.+||||
T Consensus 510 Enmfdllkee~eVvd~P~a~pl~~~~G~i~fsnvtF~Y~p--~k~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRf 587 (790)
T KOG0056|consen 510 ENMFDLLKEEPEVVDLPGAPPLKVTQGKIEFSNVTFAYDP--GKPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRF 587 (790)
T ss_pred HHHHHHhhcCchhhcCCCCCCccccCCeEEEEEeEEecCC--CCceeecceEEecCCcEEEEECCCCCchhHHHHHHHHH
Confidence 9999999999887653 33344456899999999999964 45789999999999999999999999999999999999
Q ss_pred cCCCCCCC
Q 001438 1070 YDPTAGKA 1077 (1077)
Q Consensus 1070 yd~~~G~i 1077 (1077)
||.++|+|
T Consensus 588 fdv~sGsI 595 (790)
T KOG0056|consen 588 FDVNSGSI 595 (790)
T ss_pred hhccCceE
Confidence 99999986
|
|
| >PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-33 Score=336.23 Aligned_cols=210 Identities=24% Similarity=0.308 Sum_probs=164.6
Q ss_pred ccEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCC-CccEEEECCeeCCC-CCHHHHh
Q 001438 380 GHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEP-LSGEILLDGNNIKG-LDLKWLR 457 (1077)
Q Consensus 380 ~~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~-~~G~i~~~g~~~~~-~~~~~~r 457 (1077)
..++++|+++.|++ ..+|+|+||++++||+++|+||||||||||+++|+|+.+| ++|+|+++|+++.. ......|
T Consensus 259 ~~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~~~~G~i~~~g~~~~~~~~~~~~~ 335 (490)
T PRK10938 259 PRIVLNNGVVSYND---RPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQGYSNDLTLFGRRRGSGETIWDIK 335 (490)
T ss_pred ceEEEeceEEEECC---eeEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCcccCCeEEEecccCCCCCCHHHHH
Confidence 35999999999964 3589999999999999999999999999999999998876 69999999987642 2334567
Q ss_pred hheeEEccCCCccc---ccHHHHHhcCCC-------CCCHHHHHHHHHHHhHHHHHhcCccchhh-hhcCCCCCCChHHH
Q 001438 458 QQIGLVNQEPALFA---TTIRENILYGKD-------DATMEEITRAAKLSEAMSFISNLPERFET-QVGERGIQLSGGQK 526 (1077)
Q Consensus 458 ~~i~~v~Q~~~lf~---~ti~~ni~~~~~-------~~~~~~~~~~~~~~~~~~~i~~l~~g~~t-~~~~~g~~LSgGqk 526 (1077)
++++|++|++.++. .++++++.++.. ....+. .+ +.... ++.+ |+.. .......+||||||
T Consensus 336 ~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~---l~~~--~l~~~~~~~~~~~LSgGq~ 407 (490)
T PRK10938 336 KHIGYVSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVSDRQ-QK--LAQQW---LDIL--GIDKRTADAPFHSLSWGQQ 407 (490)
T ss_pred hhceEECHHHHhhcccCCcHHHHHHhccccccccccCCCHHH-HH--HHHHH---HHHc--CCchhhccCchhhCCHHHH
Confidence 78999999987642 367777654321 011111 11 11112 2222 2332 34556678999999
Q ss_pred HHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh-CC-CeEEEEccCchhHhh--cCEEEEEECCEEEEec
Q 001438 527 QRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVM-VG-RTTVVVAHRLSTIRN--ADVIAVVQGRKIVKTG 600 (1077)
Q Consensus 527 qri~lARal~~~p~illlDEpts~lD~~~~~~i~~~l~~~~-~~-~t~i~vtH~~~~~~~--~d~i~~l~~G~i~~~g 600 (1077)
||++||||++.+|++|||||||++||+.+.+.+.+.|+++. ++ .|+|+|||+++.+.. ||++++|++|+|++.-
T Consensus 408 qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~L~~l~~~~~~tviivsHd~~~~~~~~~d~v~~l~~G~i~~~~ 485 (490)
T PRK10938 408 RLALIVRALVKHPTLLILDEPLQGLDPLNRQLVRRFVDVLISEGETQLLFVSHHAEDAPACITHRLEFVPDGDIYRYV 485 (490)
T ss_pred HHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCcEEEEEecchhhhhhhhheeEEEecCCceEEee
Confidence 99999999999999999999999999999999999998875 34 469999999999863 8999999999998753
|
|
| >COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-33 Score=273.54 Aligned_cols=221 Identities=25% Similarity=0.460 Sum_probs=183.5
Q ss_pred cEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECC-eeCCCCCHHHH-hh
Q 001438 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDG-NNIKGLDLKWL-RQ 458 (1077)
Q Consensus 381 ~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g-~~~~~~~~~~~-r~ 458 (1077)
.++++|++.+|++ ..+|+++||++.+||.-+|+||||+||||++..|.|-.+|+.|+++++| .|++.++...+ |.
T Consensus 5 iL~~~~vsVsF~G---F~Aln~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGKtrp~~G~v~f~g~~dl~~~~e~~IAr~ 81 (249)
T COG4674 5 ILYLDGVSVSFGG---FKALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLPEHRIARA 81 (249)
T ss_pred eEEEeceEEEEcc---eeeeeeeEEEecCCeEEEEECCCCCCceeeeeeecccCCCCcceEEEcCchhhccCCHHHHHHh
Confidence 4789999999963 4689999999999999999999999999999999999999999999999 99999988776 45
Q ss_pred heeEEccCCCcccc-cHHHHHhcCCCC-CCH-------HHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHH
Q 001438 459 QIGLVNQEPALFAT-TIRENILYGKDD-ATM-------EEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRI 529 (1077)
Q Consensus 459 ~i~~v~Q~~~lf~~-ti~~ni~~~~~~-~~~-------~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri 529 (1077)
.||-=+|.|..|.. ||+||+.+.... .+. ....+..+..+.+..+ |+......-...||-||||++
T Consensus 82 GIGRKFQ~PtVfe~ltV~eNLelA~~~~k~v~a~L~~r~~~~e~~ride~La~i-----gL~~~~~~~A~~LSHGqKQwL 156 (249)
T COG4674 82 GIGRKFQKPTVFENLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATI-----GLGDERDRLAALLSHGQKQWL 156 (249)
T ss_pred ccCccccCCeehhhccHHHHHHHHhcCCcchHHHhhhhcChhHHHHHHHHHHHc-----ccchhhhhhhhhhccchhhhh
Confidence 69999999999977 999999765321 100 0011112222222222 222233334568999999999
Q ss_pred HHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEccCchhHhh-cCEEEEEECCEEEEecChhHHhcC
Q 001438 530 AISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELISN 608 (1077)
Q Consensus 530 ~lARal~~~p~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 608 (1077)
.|+.-+.++|++|+||||++++-.+.....-+.|+.+..++++++|-|++.+++. ||+|-||+.|++..+|+.+++.++
T Consensus 157 EIGMll~Q~P~lLLlDEPvAGMTd~Et~~taeLl~~la~~hsilVVEHDM~Fvr~~A~~VTVlh~G~VL~EGsld~v~~d 236 (249)
T COG4674 157 EIGMLLAQDPKLLLLDEPVAGMTDAETEKTAELLKSLAGKHSILVVEHDMGFVREIADKVTVLHEGSVLAEGSLDEVQND 236 (249)
T ss_pred hhheeeccCCcEEEecCccCCCcHHHHHHHHHHHHHHhcCceEEEEeccHHHHHHhhheeEEEeccceeecccHHHhhcC
Confidence 9999999999999999999999888888888999999889999999999999986 999999999999999999999766
Q ss_pred C
Q 001438 609 P 609 (1077)
Q Consensus 609 ~ 609 (1077)
+
T Consensus 237 p 237 (249)
T COG4674 237 P 237 (249)
T ss_pred c
Confidence 4
|
|
| >cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-33 Score=280.34 Aligned_cols=155 Identities=46% Similarity=0.721 Sum_probs=144.1
Q ss_pred EEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHHHhhheeE
Q 001438 383 EFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIGL 462 (1077)
Q Consensus 383 ~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~ 462 (1077)
+++|++|.|++. ++++++||++++||+++|+||||||||||+++|.|+++|++|+|+++|.++.+.....+++.++|
T Consensus 1 ~~~~~~~~~~~~---~~l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~ 77 (157)
T cd00267 1 EIENLSFRYGGR---TALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPLEELRRRIGY 77 (157)
T ss_pred CeEEEEEEeCCe---eeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccCCHHHHHhceEE
Confidence 368999999743 58999999999999999999999999999999999999999999999999987777777888999
Q ss_pred EccCCCcccccHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHHhccCCCEE
Q 001438 463 VNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSIL 542 (1077)
Q Consensus 463 v~Q~~~lf~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~~~p~il 542 (1077)
++| ||||||||++||||++.+|+++
T Consensus 78 ~~q-------------------------------------------------------lS~G~~~r~~l~~~l~~~~~i~ 102 (157)
T cd00267 78 VPQ-------------------------------------------------------LSGGQRQRVALARALLLNPDLL 102 (157)
T ss_pred Eee-------------------------------------------------------CCHHHHHHHHHHHHHhcCCCEE
Confidence 999 9999999999999999999999
Q ss_pred EEeCcCCCCCHHHHHHHHHHHHHHhC-CCeEEEEccCchhHhh-cCEEEEEECCE
Q 001438 543 LLDEATSALDAESENSVQEALDRVMV-GRTTVVVAHRLSTIRN-ADVIAVVQGRK 595 (1077)
Q Consensus 543 llDEpts~lD~~~~~~i~~~l~~~~~-~~t~i~vtH~~~~~~~-~d~i~~l~~G~ 595 (1077)
+|||||++||.++...+.+.+.+..+ ++|++++||+++.+.. ||++++|++|+
T Consensus 103 ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~g~ 157 (157)
T cd00267 103 LLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAELAADRVIVLKDGK 157 (157)
T ss_pred EEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCcC
Confidence 99999999999999999999988654 5899999999999987 79999999975
|
The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-33 Score=284.14 Aligned_cols=145 Identities=28% Similarity=0.407 Sum_probs=131.5
Q ss_pred EeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHHHhhheeEEc
Q 001438 385 KDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIGLVN 464 (1077)
Q Consensus 385 ~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~ 464 (1077)
.|++++|++ ..++++. |++++||+++|+||||||||||+++|+|+++|++|+|.++|+ .++|++
T Consensus 4 ~~l~~~~~~---~~~l~~~-~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~------------~i~~~~ 67 (177)
T cd03222 4 PDCVKRYGV---FFLLVEL-GVVKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGI------------TPVYKP 67 (177)
T ss_pred CCeEEEECC---EEEEccC-cEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCE------------EEEEEc
Confidence 478899963 3578884 899999999999999999999999999999999999999996 389999
Q ss_pred cCCCcccccHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHHhccCCCEEEE
Q 001438 465 QEPALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLL 544 (1077)
Q Consensus 465 Q~~~lf~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~~~p~illl 544 (1077)
|++. ||||||||++||||++.+|++++|
T Consensus 68 q~~~----------------------------------------------------LSgGq~qrv~laral~~~p~lllL 95 (177)
T cd03222 68 QYID----------------------------------------------------LSGGELQRVAIAAALLRNATFYLF 95 (177)
T ss_pred ccCC----------------------------------------------------CCHHHHHHHHHHHHHhcCCCEEEE
Confidence 8653 999999999999999999999999
Q ss_pred eCcCCCCCHHHHHHHHHHHHHHh-C-CCeEEEEccCchhHhh-cCEEEEEECCEEE
Q 001438 545 DEATSALDAESENSVQEALDRVM-V-GRTTVVVAHRLSTIRN-ADVIAVVQGRKIV 597 (1077)
Q Consensus 545 DEpts~lD~~~~~~i~~~l~~~~-~-~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~ 597 (1077)
||||++||+++.+.+.+.++++. + ++|+|++||+++.+.. ||++++|+++-.+
T Consensus 96 DEPts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~~~~~ 151 (177)
T cd03222 96 DEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLAVLDYLSDRIHVFEGEPGV 151 (177)
T ss_pred ECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHhCCEEEEEcCCCcc
Confidence 99999999999999999998864 4 4899999999999875 9999999988654
|
RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. |
| >KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-30 Score=290.59 Aligned_cols=365 Identities=15% Similarity=0.200 Sum_probs=267.1
Q ss_pred HHhhHHhHHHHHHHHHHHhhc-cCchh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q 001438 707 IAGAQMPLFALGVSQALVAYY-MDWDT-TQREVKKITILFCCAAVITVIVHAIEHLSFGIMGERLTLRVREKMFSAILSN 784 (1077)
Q Consensus 707 ~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~Lr~~l~~~llr~ 784 (1077)
.+.......+..+...++..- .+... ...........|++..+...++.-++.+.|+++.+++.++.-.+.|++++..
T Consensus 41 ~aK~l~v~vp~~~~~~id~l~~~~~~~a~~~~~~~~~~~y~iar~~s~~F~el~~~vfa~v~q~~iR~~~~~vf~~~~~l 120 (591)
T KOG0057|consen 41 GAKILNVQVPFIFKLIIDGLNDADGNPAVLSTITALLAGYGIARLGSSVFNELRNFVFAKVAQRVIRDSSSDVFRHLMSL 120 (591)
T ss_pred hhhHhheehHHHHHHHHhhhhhcccCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 334555566666666665431 11100 0011223356788888899999999999999999999999999999999999
Q ss_pred CccccccccCCchhHHHHHhhcHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHHHHHHH
Q 001438 785 EIGWFDEMDNSSSILASRLESDATLLRTIVVDRSTILIQNFGLVTASFVIAFI-LNWRITLVVVATYPLIISGHISEKLF 863 (1077)
Q Consensus 785 p~~FFD~~~~~~G~IlnR~s~D~~~i~~~l~~~l~~~~~~~~~~~~~i~i~~~-~~w~l~l~~l~~~Pl~i~~~~~~~~~ 863 (1077)
+.+||-. ..+|.|.++..+-...+...+...+..++..++-+..+.....+ ..+..+++.+..+-.-+.+......+
T Consensus 121 d~~~~~~--~~tG~l~~~idRgsraI~~vl~~~V~~i~p~~~~i~~v~~~l~~~~Ga~~~li~~~~v~~Y~a~Ti~~t~~ 198 (591)
T KOG0057|consen 121 DLSFFLS--RGTGALNRIIDRGSRAISFVLSAMVFNIIPTLFEIALVSGILYYKFGAAFALITLGTVGAYAAFTIVVTRW 198 (591)
T ss_pred hHHhhcC--CCcchHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHhheeEEeehhH
Confidence 9999994 77899998888888888887777777666665554444333222 23333333332222221111111111
Q ss_pred HHhhhhhHHHHHHHHhHHHHHHHcchHHHHHhcchHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001438 864 FQGYGGNLSKAYLKANMLAAEAVSNIRTVAAFCSEDKVLELYSRELVEPSKRSFIRGQIAGIFYGISQFFIFSSYGLALW 943 (1077)
Q Consensus 864 ~~~~~~~~~~~~~~~~~~~~Etl~Gi~tIrAf~~e~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 943 (1077)
--++.++...+...+...+-++|.|-.+||+|+.|+++.++|++.+.+..+...+.....++....+..+.....+.+.+
T Consensus 199 Rn~fR~~~N~Adn~as~~~~dsL~Nye~VKsfNnE~~Ea~~y~~~l~~~~~~~~~~~~sl~~lnfgQ~~iFsv~~~~im~ 278 (591)
T KOG0057|consen 199 RNRFRKAMNNADNSASRRAYDSLINYEIVKSFNNEEYEASRYDGSLKTYERAGLKYSSSLAFLNFGQKAIFSVALTFIMV 278 (591)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHhhHHHHHHcccHHHHHHHHHHHHHHHHHhhhhHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 12233445666777778889999999999999999999999999999998888877777777666666666677777777
Q ss_pred HHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHcCCCCccCCCCcccccccccEEEeee
Q 001438 944 YGSVLMGKELASFKSVMKSFMVLIVTALAMGETLALVPDLLKGNQMAASVFEVLDRKTQVIGDIGEELTNVEGTIELRGV 1023 (1077)
Q Consensus 944 ~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~~G~I~f~nV 1023 (1077)
.|..-+..+.+++++++.....+.....++..+...+.++..+..-.+.++...+....+... +.+....+|.|+|+||
T Consensus 279 l~~~gi~~~~mtvgdlv~~n~l~~qL~~~l~~Lg~vyr~~~q~l~Dm~~~~~l~~~~~~i~~~-~~~i~~~~~~I~F~dV 357 (591)
T KOG0057|consen 279 LGSNGIAAGKMTVGDLVMVNSLLFQLSLPLNFLGSVYRELRQALTDMRTLFILLEVDEDIQEA-ALPIELFGGSIEFDDV 357 (591)
T ss_pred HHhhhhhhccccccchhhHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHhhhhhhhhhhhc-cCCcccCCCcEEEEee
Confidence 777778888999999998888888888899988888888877777666666665543333221 1222345688999999
Q ss_pred eeeCCCCCcccccccceeeeeCCCEEEEECCCCCCHHHHHHHHhhccCCCCCCC
Q 001438 1024 HFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKA 1077 (1077)
Q Consensus 1024 sf~Y~~~~~~~VLk~vsl~I~~GekVaIVGrTGsGKSTLi~lL~Rfyd~~~G~i 1077 (1077)
+|.|++ .++||||+||+|++||||||||++||||||++++|+||+| .+|+|
T Consensus 358 ~f~y~~--k~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d-~sG~I 408 (591)
T KOG0057|consen 358 HFSYGP--KRKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFD-YSGSI 408 (591)
T ss_pred EEEeCC--CCceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhc-cCCcE
Confidence 999974 3458999999999999999999999999999999999999 89986
|
|
| >PRK11819 putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-32 Score=332.78 Aligned_cols=204 Identities=27% Similarity=0.426 Sum_probs=164.0
Q ss_pred ccEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHHHhhh
Q 001438 380 GHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQ 459 (1077)
Q Consensus 380 ~~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~ 459 (1077)
..++++|++++|++ ..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+++ ++ +
T Consensus 323 ~~l~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~-~~----------~ 388 (556)
T PRK11819 323 KVIEAENLSKSFGD---RLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKIGE-TV----------K 388 (556)
T ss_pred eEEEEEeEEEEECC---eeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECC-ce----------E
Confidence 36999999999964 3589999999999999999999999999999999999999999999954 21 5
Q ss_pred eeEEccCC-Ccccc-cHHHHHhcCCCCC--CHHHHHHHHHHHhHHHHHhcCccchhh-hhcCCCCCCChHHHHHHHHHHH
Q 001438 460 IGLVNQEP-ALFAT-TIRENILYGKDDA--TMEEITRAAKLSEAMSFISNLPERFET-QVGERGIQLSGGQKQRIAISRA 534 (1077)
Q Consensus 460 i~~v~Q~~-~lf~~-ti~~ni~~~~~~~--~~~~~~~~~~~~~~~~~i~~l~~g~~t-~~~~~g~~LSgGqkqri~lARa 534 (1077)
|||+||++ .+++. |++||+.++.... ...+. .+. .. ++.+ |+.. .......+||||||||++||||
T Consensus 389 i~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~-~~~---~~---l~~~--~l~~~~~~~~~~~LSgG~~qrv~la~a 459 (556)
T PRK11819 389 LAYVDQSRDALDPNKTVWEEISGGLDIIKVGNREI-PSR---AY---VGRF--NFKGGDQQKKVGVLSGGERNRLHLAKT 459 (556)
T ss_pred EEEEeCchhhcCCCCCHHHHHHhhcccccccccHH-HHH---HH---HHhC--CCChhHhcCchhhCCHHHHHHHHHHHH
Confidence 99999997 56654 9999998764211 11110 111 11 2222 2221 2345667899999999999999
Q ss_pred hccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEccCchhHhh-cCEEEEEEC-CEEE-EecChhHHhcC
Q 001438 535 IVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRN-ADVIAVVQG-RKIV-KTGSHEELISN 608 (1077)
Q Consensus 535 l~~~p~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~vtH~~~~~~~-~d~i~~l~~-G~i~-~~g~~~~l~~~ 608 (1077)
++.+|++|||||||++||+.+...+.+.|.++. .|+|+|||+++.+.. ||+|++|++ |++. ..|+++++.++
T Consensus 460 l~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~--~tvi~vtHd~~~~~~~~d~i~~l~~~g~~~~~~g~~~~~~~~ 534 (556)
T PRK11819 460 LKQGGNVLLLDEPTNDLDVETLRALEEALLEFP--GCAVVISHDRWFLDRIATHILAFEGDSQVEWFEGNFQEYEED 534 (556)
T ss_pred HhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhCC--CeEEEEECCHHHHHHhCCEEEEEECCCeEEEecCCHHHHHHH
Confidence 999999999999999999999999999998863 489999999998875 999999996 7876 47887776543
|
|
| >TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-32 Score=331.74 Aligned_cols=202 Identities=27% Similarity=0.426 Sum_probs=162.6
Q ss_pred ccEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHHHhhh
Q 001438 380 GHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQ 459 (1077)
Q Consensus 380 ~~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~ 459 (1077)
..++++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+.+|++|+|.+++ ++ +
T Consensus 321 ~~l~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~~-~~----------~ 386 (552)
T TIGR03719 321 KVIEAENLSKGFGD---KLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIKIGE-TV----------K 386 (552)
T ss_pred eEEEEeeEEEEECC---eeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEECC-ce----------E
Confidence 36999999999964 3599999999999999999999999999999999999999999999954 21 5
Q ss_pred eeEEccCCC-cccc-cHHHHHhcCCCCC--CHHHHHHHHHHHhHHHHHhcCccchhh-hhcCCCCCCChHHHHHHHHHHH
Q 001438 460 IGLVNQEPA-LFAT-TIRENILYGKDDA--TMEEITRAAKLSEAMSFISNLPERFET-QVGERGIQLSGGQKQRIAISRA 534 (1077)
Q Consensus 460 i~~v~Q~~~-lf~~-ti~~ni~~~~~~~--~~~~~~~~~~~~~~~~~i~~l~~g~~t-~~~~~g~~LSgGqkqri~lARa 534 (1077)
|||++|++. +++. |++||+.++.... ...+ ..+. +.++.+ |+.. .......+||||||||++||||
T Consensus 387 i~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~-~~~~------~~l~~~--~l~~~~~~~~~~~LSgGe~qrv~la~a 457 (552)
T TIGR03719 387 LAYVDQSRDALDPNKTVWEEISGGLDIIQLGKRE-VPSR------AYVGRF--NFKGSDQQKKVGQLSGGERNRVHLAKT 457 (552)
T ss_pred EEEEeCCccccCCCCcHHHHHHhhccccccCcch-HHHH------HHHHhC--CCChhHhcCchhhCCHHHHHHHHHHHH
Confidence 999999973 6654 9999998864211 1111 0111 112222 2322 2345667899999999999999
Q ss_pred hccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEccCchhHhh-cCEEEEEEC-CEEE-EecChhHHh
Q 001438 535 IVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRN-ADVIAVVQG-RKIV-KTGSHEELI 606 (1077)
Q Consensus 535 l~~~p~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~vtH~~~~~~~-~d~i~~l~~-G~i~-~~g~~~~l~ 606 (1077)
++.+|++|||||||++||+.+.+.+.+.|+++. .|+|+|||+++.+.. ||+|++|++ |++. ..|++++..
T Consensus 458 l~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~--~~viivsHd~~~~~~~~d~i~~l~~~~~~~~~~g~~~~~~ 530 (552)
T TIGR03719 458 LKSGGNVLLLDEPTNDLDVETLRALEEALLEFA--GCAVVISHDRWFLDRIATHILAFEGDSHVEWFEGNYSEYE 530 (552)
T ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHCC--CeEEEEeCCHHHHHHhCCEEEEEECCCeEEEeCCCHHHHH
Confidence 999999999999999999999999999998873 489999999999875 999999997 5876 457776654
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. |
| >COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-33 Score=255.91 Aligned_cols=195 Identities=29% Similarity=0.445 Sum_probs=158.3
Q ss_pred cEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCC---ccEEEECCeeCCCCCHHHHh
Q 001438 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPL---SGEILLDGNNIKGLDLKWLR 457 (1077)
Q Consensus 381 ~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~---~G~i~~~g~~~~~~~~~~~r 457 (1077)
.+.++||+.+-+++ ..|-|+||+|.+||++-+.||||||||||+.-+.|.+.++ +|++.+|++++..++.. +
T Consensus 2 ~l~l~nvsl~l~g~---cLLa~~n~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~~lPa~--q 76 (213)
T COG4136 2 MLCLKNVSLRLPGS---CLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAA--Q 76 (213)
T ss_pred ceeeeeeeecCCCc---eEEEeeeEEecCCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeeccccchh--h
Confidence 46789999877643 5899999999999999999999999999999999999874 89999999999877654 5
Q ss_pred hheeEEccCCCcccc-cHHHHHhcCCCCC-CHHH----HHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHH
Q 001438 458 QQIGLVNQEPALFAT-TIRENILYGKDDA-TMEE----ITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAI 531 (1077)
Q Consensus 458 ~~i~~v~Q~~~lf~~-ti~~ni~~~~~~~-~~~~----~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~l 531 (1077)
+++|+.+||+|||+- +|.+||.|..|.. +-+. ...|++.. |++......+.+||||||.||+|
T Consensus 77 Rq~GiLFQD~lLFphlsVg~Nl~fAlp~~~KG~aRr~~a~aAL~~~-----------gL~g~f~~dP~tlSGGQrARvaL 145 (213)
T COG4136 77 RQIGILFQDALLFPHLSVGQNLLFALPATLKGNARRNAANAALERS-----------GLDGAFHQDPATLSGGQRARVAL 145 (213)
T ss_pred hheeeeecccccccccccccceEEecCcccccHHHHhhHHHHHHHh-----------ccchhhhcChhhcCcchHHHHHH
Confidence 689999999999987 9999999987532 2121 12222222 34444455667899999999999
Q ss_pred HHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHH-HHh-CCCeEEEEccCchhHhhcCEEEEE
Q 001438 532 SRAIVKNPSILLLDEATSALDAESENSVQEALD-RVM-VGRTTVVVAHRLSTIRNADVIAVV 591 (1077)
Q Consensus 532 ARal~~~p~illlDEpts~lD~~~~~~i~~~l~-~~~-~~~t~i~vtH~~~~~~~~d~i~~l 591 (1077)
-|+|+..|+.++||||+|.||..-+.++.+-.- +.+ .|..+|+|||+.+.++...||+-|
T Consensus 146 ~R~Lla~Pk~lLLDEPFS~LD~ALR~qfR~wVFs~~r~agiPtv~VTHD~~DvpagsrVie~ 207 (213)
T COG4136 146 LRALLAQPKALLLDEPFSRLDVALRDQFRQWVFSEVRAAGIPTVQVTHDLQDVPAGSRVIEM 207 (213)
T ss_pred HHHHHhCcceeeeCCchhHHHHHHHHHHHHHHHHHHHhcCCCeEEEecccccCCCCCeeeee
Confidence 999999999999999999999998888876553 333 588999999999988865565543
|
|
| >PRK10636 putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-32 Score=336.10 Aligned_cols=200 Identities=28% Similarity=0.429 Sum_probs=161.6
Q ss_pred ccEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHHHhhh
Q 001438 380 GHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQ 459 (1077)
Q Consensus 380 ~~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~ 459 (1077)
..|+++|+++.|++ ..+|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+++. .+
T Consensus 311 ~~l~~~~l~~~y~~---~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-----------~~ 376 (638)
T PRK10636 311 PLLKMEKVSAGYGD---RIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKG-----------IK 376 (638)
T ss_pred ceEEEEeeEEEeCC---eeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCC-----------EE
Confidence 36999999999963 35899999999999999999999999999999999999999999999741 15
Q ss_pred eeEEccCC--Cccc-ccHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHhcCccchh-hhhcCCCCCCChHHHHHHHHHHHh
Q 001438 460 IGLVNQEP--ALFA-TTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFE-TQVGERGIQLSGGQKQRIAISRAI 535 (1077)
Q Consensus 460 i~~v~Q~~--~lf~-~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~-t~~~~~g~~LSgGqkqri~lARal 535 (1077)
+||++|++ .+.. .|+.+++....+....+++.. .+..+ ++. .........||||||||++||||+
T Consensus 377 igy~~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~---------~L~~~--~l~~~~~~~~~~~LSgGekqRl~La~~l 445 (638)
T PRK10636 377 LGYFAQHQLEFLRADESPLQHLARLAPQELEQKLRD---------YLGGF--GFQGDKVTEETRRFSGGEKARLVLALIV 445 (638)
T ss_pred EEEecCcchhhCCccchHHHHHHHhCchhhHHHHHH---------HHHHc--CCChhHhcCchhhCCHHHHHHHHHHHHH
Confidence 99999985 3443 388888742111111112211 12222 221 123455678999999999999999
Q ss_pred ccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEccCchhHhh-cCEEEEEECCEEE-EecChhHHh
Q 001438 536 VKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRN-ADVIAVVQGRKIV-KTGSHEELI 606 (1077)
Q Consensus 536 ~~~p~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~-~~g~~~~l~ 606 (1077)
+.+|++|||||||++||+.+...+.+.|.++ . .|+|+|||++..+.. ||+|++|++|+++ ..|++++..
T Consensus 446 ~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~-~-gtvi~vSHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 516 (638)
T PRK10636 446 WQRPNLLLLDEPTNHLDLDMRQALTEALIDF-E-GALVVVSHDRHLLRSTTDDLYLVHDGKVEPFDGDLEDYQ 516 (638)
T ss_pred hcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc-C-CeEEEEeCCHHHHHHhCCEEEEEECCEEEEcCCCHHHHH
Confidence 9999999999999999999999999999887 3 499999999999875 9999999999997 788888763
|
|
| >COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-32 Score=271.20 Aligned_cols=215 Identities=30% Similarity=0.412 Sum_probs=178.0
Q ss_pred cEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcc--cCCCccEEEECCeeCCCCCHHHH-h
Q 001438 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERF--YEPLSGEILLDGNNIKGLDLKWL-R 457 (1077)
Q Consensus 381 ~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~--~~~~~G~i~~~g~~~~~~~~~~~-r 457 (1077)
.++++|++.+-.++ +.+|+++||+|++||+.+|.||||||||||.++|+|. |++++|+|.+||+||.++++++. |
T Consensus 3 ~L~I~dLhv~v~~~--keILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I~~~GedI~~l~~~ERAr 80 (251)
T COG0396 3 MLEIKDLHVEVEGK--KEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILELSPDERAR 80 (251)
T ss_pred eeEEeeeEEEecCc--hhhhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCCceEecceEEECCcccccCCHhHHHh
Confidence 47899999987542 3699999999999999999999999999999999997 68999999999999999998764 5
Q ss_pred hheeEEccCCCcccc-cHHHHHhcCCCCC---------CHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHH
Q 001438 458 QQIGLVNQEPALFAT-TIRENILYGKDDA---------TMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQ 527 (1077)
Q Consensus 458 ~~i~~v~Q~~~lf~~-ti~~ni~~~~~~~---------~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkq 527 (1077)
..|...+|.|.=++| ++.+-+..+.... ..+++.++++..+.. |+-++..+++ .+|||+|+
T Consensus 81 ~GifLafQ~P~ei~GV~~~~fLr~a~n~~~~~~~~~~~~~~~~~e~~~~l~~~------~~~l~R~vN~---GFSGGEkK 151 (251)
T COG0396 81 AGIFLAFQYPVEIPGVTNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLD------EEFLERYVNE---GFSGGEKK 151 (251)
T ss_pred cCCEEeecCCccCCCeeHHHHHHHHHHhhhccccccHHHHHHHHHHHHHcCCC------HHHhhcccCC---CcCcchHH
Confidence 679999999999999 9999887543211 122223333322221 1122333443 69999999
Q ss_pred HHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCeEEEEccCchhHhh--cCEEEEEECCEEEEecChhH
Q 001438 528 RIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLSTIRN--ADVIAVVQGRKIVKTGSHEE 604 (1077)
Q Consensus 528 ri~lARal~~~p~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~vtH~~~~~~~--~d~i~~l~~G~i~~~g~~~~ 604 (1077)
|.-|+..++.+|++.|||||=|+||..+-+.+-+.+..++ +++++++|||.-..+.+ .|++.||-+|+|+..|.+ |
T Consensus 152 R~EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~~~~~~liITHy~rll~~i~pD~vhvl~~GrIv~sG~~-e 230 (251)
T COG0396 152 RNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQRLLDYIKPDKVHVLYDGRIVKSGDP-E 230 (251)
T ss_pred HHHHHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHhhcCCCEEEEEECCEEEecCCH-H
Confidence 9999999999999999999999999999999999998876 58999999999998876 599999999999999998 7
Q ss_pred Hhc
Q 001438 605 LIS 607 (1077)
Q Consensus 605 l~~ 607 (1077)
|..
T Consensus 231 l~~ 233 (251)
T COG0396 231 LAE 233 (251)
T ss_pred HHH
Confidence 654
|
|
| >PLN03073 ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-32 Score=333.19 Aligned_cols=199 Identities=26% Similarity=0.377 Sum_probs=158.1
Q ss_pred ccEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHHHhhh
Q 001438 380 GHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQ 459 (1077)
Q Consensus 380 ~~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~ 459 (1077)
..++++|+++.|++. .++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+++. .+
T Consensus 507 ~~L~~~~ls~~y~~~--~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p~~G~I~~~~~-----------~~ 573 (718)
T PLN03073 507 PIISFSDASFGYPGG--PLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTVFRSAK-----------VR 573 (718)
T ss_pred ceEEEEeeEEEeCCC--CeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCceEEECCc-----------ee
Confidence 469999999999632 35899999999999999999999999999999999999999999998762 36
Q ss_pred eeEEccCCCcccccHHHHHhcC----CCCCCHHHHHHHHHHHhHHHHHhcCccchh-hhhcCCCCCCChHHHHHHHHHHH
Q 001438 460 IGLVNQEPALFATTIRENILYG----KDDATMEEITRAAKLSEAMSFISNLPERFE-TQVGERGIQLSGGQKQRIAISRA 534 (1077)
Q Consensus 460 i~~v~Q~~~lf~~ti~~ni~~~----~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~-t~~~~~g~~LSgGqkqri~lARa 534 (1077)
|||++|++. ...++.+|.... .+....+++...++. + |+. ........+||||||||++||||
T Consensus 574 igyv~Q~~~-~~l~~~~~~~~~~~~~~~~~~~~~i~~~L~~---------~--gl~~~~~~~~~~~LSgGqkqRvaLAra 641 (718)
T PLN03073 574 MAVFSQHHV-DGLDLSSNPLLYMMRCFPGVPEQKLRAHLGS---------F--GVTGNLALQPMYTLSGGQKSRVAFAKI 641 (718)
T ss_pred EEEEecccc-ccCCcchhHHHHHHHhcCCCCHHHHHHHHHH---------C--CCChHHhcCCccccCHHHHHHHHHHHH
Confidence 999999873 222455553211 122223333222222 1 222 12345677999999999999999
Q ss_pred hccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEccCchhHhh-cCEEEEEECCEEE-EecChhHH
Q 001438 535 IVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRN-ADVIAVVQGRKIV-KTGSHEEL 605 (1077)
Q Consensus 535 l~~~p~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~-~~g~~~~l 605 (1077)
++.+|++|||||||++||+.+...+.+.+.+. + .|+|+|||+++.+.. ||++++|++|+++ ..|++++.
T Consensus 642 L~~~p~lLLLDEPT~~LD~~s~~~l~~~L~~~-~-gtvIivSHd~~~i~~~~drv~~l~~G~i~~~~g~~~~~ 712 (718)
T PLN03073 642 TFKKPHILLLDEPSNHLDLDAVEALIQGLVLF-Q-GGVLMVSHDEHLISGSVDELWVVSEGKVTPFHGTFHDY 712 (718)
T ss_pred HhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc-C-CEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCCHHHH
Confidence 99999999999999999999999998888765 3 499999999999876 9999999999998 67877664
|
|
| >PRK11147 ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-32 Score=335.11 Aligned_cols=203 Identities=24% Similarity=0.418 Sum_probs=161.4
Q ss_pred ccEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHHHhhh
Q 001438 380 GHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQ 459 (1077)
Q Consensus 380 ~~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~ 459 (1077)
..|+++|++++|++ .++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+ |.++ +
T Consensus 318 ~~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~-~~~~----------~ 383 (635)
T PRK11147 318 IVFEMENVNYQIDG---KQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHC-GTKL----------E 383 (635)
T ss_pred ceEEEeeeEEEECC---eEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEE-CCCc----------E
Confidence 35899999999964 35899999999999999999999999999999999999999999998 5332 5
Q ss_pred eeEEccCC-Ccccc-cHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHhcCccchh-hhhcCCCCCCChHHHHHHHHHHHhc
Q 001438 460 IGLVNQEP-ALFAT-TIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFE-TQVGERGIQLSGGQKQRIAISRAIV 536 (1077)
Q Consensus 460 i~~v~Q~~-~lf~~-ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~-t~~~~~g~~LSgGqkqri~lARal~ 536 (1077)
|||++|++ .+++. |+.||+.++.+......... +.. +.+..+ |+. .........||||||||++||||++
T Consensus 384 i~y~~q~~~~l~~~~tv~e~l~~~~~~~~~~~~~~--~~~---~~l~~~--~l~~~~~~~~~~~LSgGekqRl~la~al~ 456 (635)
T PRK11147 384 VAYFDQHRAELDPEKTVMDNLAEGKQEVMVNGRPR--HVL---GYLQDF--LFHPKRAMTPVKALSGGERNRLLLARLFL 456 (635)
T ss_pred EEEEeCcccccCCCCCHHHHHHhhcccccccchHH--HHH---HHHHhc--CCCHHHHhChhhhCCHHHHHHHHHHHHHh
Confidence 99999986 46655 99999987543211010000 111 112222 111 1234455689999999999999999
Q ss_pred cCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEccCchhHhh-cCEEEEEE-CCEEEE-ecChhHH
Q 001438 537 KNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRN-ADVIAVVQ-GRKIVK-TGSHEEL 605 (1077)
Q Consensus 537 ~~p~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~vtH~~~~~~~-~d~i~~l~-~G~i~~-~g~~~~l 605 (1077)
.+|++|||||||++||+.+...+.+.|++. +.|+|+|||+.+.+.. ||+|++|+ +|++.+ .|++++.
T Consensus 457 ~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vSHd~~~~~~~~d~i~~l~~~g~i~~~~g~y~~y 526 (635)
T PRK11147 457 KPSNLLILDEPTNDLDVETLELLEELLDSY--QGTVLLVSHDRQFVDNTVTECWIFEGNGKIGRYVGGYHDA 526 (635)
T ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHHHHhC--CCeEEEEECCHHHHHHhcCEEEEEeCCCeEEEccCCHHHH
Confidence 999999999999999999999999999876 4599999999999865 99999998 899876 5666665
|
|
| >cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-32 Score=276.42 Aligned_cols=155 Identities=25% Similarity=0.401 Sum_probs=127.7
Q ss_pred cccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHHHhhheeEEccCCCcccccHHH
Q 001438 397 VAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIGLVNQEPALFATTIRE 476 (1077)
Q Consensus 397 ~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~~ 476 (1077)
.++|+|+||++++|++++|+||||||||||+++++ +++|++.++|.. ... .++.++|++|
T Consensus 8 ~~~l~~isl~i~~G~~~~l~G~nG~GKSTLl~~il----~~~G~v~~~~~~-~~~----~~~~~~~~~q----------- 67 (176)
T cd03238 8 VHNLQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGL----YASGKARLISFL-PKF----SRNKLIFIDQ----------- 67 (176)
T ss_pred eeeecceEEEEcCCCEEEEECCCCCCHHHHHHHHh----hcCCcEEECCcc-ccc----ccccEEEEhH-----------
Confidence 46899999999999999999999999999999986 369999998762 111 2345888887
Q ss_pred HHhcCCCCCCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHHhccC--CCEEEEeCcCCCCCHH
Q 001438 477 NILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKN--PSILLLDEATSALDAE 554 (1077)
Q Consensus 477 ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~~~--p~illlDEpts~lD~~ 554 (1077)
.+ +++.++-+.. ..+++..+||||||||++||||++.+ |+++||||||++||++
T Consensus 68 --------------~~---------~l~~~~L~~~-~~~~~~~~LSgGq~qrl~laral~~~~~p~llLlDEPt~~LD~~ 123 (176)
T cd03238 68 --------------LQ---------FLIDVGLGYL-TLGQKLSTLSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQ 123 (176)
T ss_pred --------------HH---------HHHHcCCCcc-ccCCCcCcCCHHHHHHHHHHHHHhhCCCCCEEEEeCCcccCCHH
Confidence 01 1222221111 24567789999999999999999999 9999999999999999
Q ss_pred HHHHHHHHHHHHh-CCCeEEEEccCchhHhhcCEEEEEECCE
Q 001438 555 SENSVQEALDRVM-VGRTTVVVAHRLSTIRNADVIAVVQGRK 595 (1077)
Q Consensus 555 ~~~~i~~~l~~~~-~~~t~i~vtH~~~~~~~~d~i~~l~~G~ 595 (1077)
+.+.+.+.|+++. .++|+|++||+++.+..||++++|++|+
T Consensus 124 ~~~~l~~~l~~~~~~g~tvIivSH~~~~~~~~d~i~~l~~g~ 165 (176)
T cd03238 124 DINQLLEVIKGLIDLGNTVILIEHNLDVLSSADWIIDFGPGS 165 (176)
T ss_pred HHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhCCEEEEECCCC
Confidence 9999999998875 5899999999999988899999997654
|
Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. |
| >PRK13409 putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-32 Score=328.45 Aligned_cols=194 Identities=26% Similarity=0.341 Sum_probs=160.2
Q ss_pred ccEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHHHhhh
Q 001438 380 GHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQ 459 (1077)
Q Consensus 380 ~~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~ 459 (1077)
..++++|++++|++ ..|+++||+|++||+++|+||||||||||+++|+|+.+|++|+|.++ . +
T Consensus 339 ~~l~~~~ls~~~~~----~~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I~~~-~------------~ 401 (590)
T PRK13409 339 TLVEYPDLTKKLGD----FSLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPE-L------------K 401 (590)
T ss_pred eEEEEcceEEEECC----EEEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEe-e------------e
Confidence 35899999999963 24899999999999999999999999999999999999999999986 1 5
Q ss_pred eeEEccCCCcc-cccHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHHhccC
Q 001438 460 IGLVNQEPALF-ATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKN 538 (1077)
Q Consensus 460 i~~v~Q~~~lf-~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~~~ 538 (1077)
++|+||++.++ +.|++||+.++......+. . . .+.++.+ |++........+||||||||++|||||+.+
T Consensus 402 i~y~~Q~~~~~~~~tv~e~l~~~~~~~~~~~--~---~---~~~L~~l--~l~~~~~~~~~~LSGGe~QRvaiAraL~~~ 471 (590)
T PRK13409 402 ISYKPQYIKPDYDGTVEDLLRSITDDLGSSY--Y---K---SEIIKPL--QLERLLDKNVKDLSGGELQRVAIAACLSRD 471 (590)
T ss_pred EEEecccccCCCCCcHHHHHHHHhhhcChHH--H---H---HHHHHHC--CCHHHHhCCcccCCHHHHHHHHHHHHHhcC
Confidence 99999998765 5699999987532222111 1 1 1112222 333345566778999999999999999999
Q ss_pred CCEEEEeCcCCCCCHHHHHHHHHHHHHHh--CCCeEEEEccCchhHhh-cCEEEEEECCEEEEecC
Q 001438 539 PSILLLDEATSALDAESENSVQEALDRVM--VGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGS 601 (1077)
Q Consensus 539 p~illlDEpts~lD~~~~~~i~~~l~~~~--~~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~g~ 601 (1077)
|++|||||||++||+.+...+.+.|+++. .++|+|+|||+++.+.. |||+++|++ ++...|+
T Consensus 472 p~llLLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivsHD~~~~~~~aDrvivl~~-~~~~~g~ 536 (590)
T PRK13409 472 ADLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATALVVDHDIYMIDYISDRLMVFEG-EPGKHGH 536 (590)
T ss_pred CCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEcC-cceeeee
Confidence 99999999999999999999999999874 37999999999999865 999999965 8877776
|
|
| >PLN03140 ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-32 Score=353.04 Aligned_cols=219 Identities=26% Similarity=0.410 Sum_probs=175.8
Q ss_pred ccEEEEeEEEEcCCC----------CCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCC--CccEEEECCee
Q 001438 380 GHIEFKDVSFCYPSR----------PDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEP--LSGEILLDGNN 447 (1077)
Q Consensus 380 ~~i~~~~v~~~y~~~----------~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~--~~G~i~~~g~~ 447 (1077)
..+.++||++..+.. ....+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+
T Consensus 866 ~~~~~~~v~y~v~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~~ 945 (1470)
T PLN03140 866 LAMSFDDVNYFVDMPAEMKEQGVTEDRLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFP 945 (1470)
T ss_pred ceEEEEEEEEEEccCccccccccCcCCceEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCcc
Confidence 368999999987521 123699999999999999999999999999999999999763 78999999987
Q ss_pred CCCCCHHHHhhheeEEccCCCcccc-cHHHHHhcCC----C-CCCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCC-CC
Q 001438 448 IKGLDLKWLRQQIGLVNQEPALFAT-TIRENILYGK----D-DATMEEITRAAKLSEAMSFISNLPERFETQVGERG-IQ 520 (1077)
Q Consensus 448 ~~~~~~~~~r~~i~~v~Q~~~lf~~-ti~~ni~~~~----~-~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g-~~ 520 (1077)
.+ ...+|+.+|||+|++.+++. ||+||+.++. + ..+.++.. ....+..+.+ ++.+-.++.+|..+ ..
T Consensus 946 ~~---~~~~~~~igyv~Q~d~~~~~lTV~E~L~~~a~lr~~~~~~~~~~~--~~v~~vl~~l-gL~~~~~~~vg~~~~~~ 1019 (1470)
T PLN03140 946 KK---QETFARISGYCEQNDIHSPQVTVRESLIYSAFLRLPKEVSKEEKM--MFVDEVMELV-ELDNLKDAIVGLPGVTG 1019 (1470)
T ss_pred CC---hHHhhhheEEEccccccCCCCcHHHHHHHHHHhCCCCCCCHHHHH--HHHHHHHHHC-CChhHhCCccCCCCCCC
Confidence 64 24567789999999988765 9999998752 1 11222211 1111222222 34444577787544 68
Q ss_pred CChHHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCeEEEEccCchh-H-hhcCEEEEEEC-CEE
Q 001438 521 LSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLST-I-RNADVIAVVQG-RKI 596 (1077)
Q Consensus 521 LSgGqkqri~lARal~~~p~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~vtH~~~~-~-~~~d~i~~l~~-G~i 596 (1077)
||||||||++|||+|+.+|+||+||||||+||+.+...+.+.|+++. +|+|+|+++|+++. + +.+|++++|++ |++
T Consensus 1020 LSgGerkRvsIa~aL~~~P~lL~LDEPTsgLD~~~a~~v~~~L~~l~~~g~tVI~t~Hq~~~~i~~~~D~vllL~~gG~~ 1099 (1470)
T PLN03140 1020 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQV 1099 (1470)
T ss_pred cCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHhCCEEEEEcCCCEE
Confidence 99999999999999999999999999999999999999999999874 58999999999984 4 56999999996 899
Q ss_pred EEecChhH
Q 001438 597 VKTGSHEE 604 (1077)
Q Consensus 597 ~~~g~~~~ 604 (1077)
+..|+..+
T Consensus 1100 v~~G~~~~ 1107 (1470)
T PLN03140 1100 IYSGPLGR 1107 (1470)
T ss_pred EEECCccc
Confidence 99998754
|
|
| >COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.2e-31 Score=270.29 Aligned_cols=188 Identities=31% Similarity=0.423 Sum_probs=152.5
Q ss_pred CcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHHHhhheeEEccCCCccc--cc
Q 001438 396 DVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIGLVNQEPALFA--TT 473 (1077)
Q Consensus 396 ~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~--~t 473 (1077)
...+|+||||++++||.+||||+||||||||+++|+|.|+|++|+|.++|+ |++...-..=|+ .|
T Consensus 39 ~~~aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~Pt~G~v~v~G~-------------v~~li~lg~Gf~pelT 105 (249)
T COG1134 39 EFWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKVKVTGK-------------VAPLIELGAGFDPELT 105 (249)
T ss_pred eEEEecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCccCCCCceEEEcce-------------EehhhhcccCCCcccc
Confidence 346899999999999999999999999999999999999999999999995 554443333343 49
Q ss_pred HHHHHhcCC--CCCCHHHHH----HHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHHhccCCCEEEEeCc
Q 001438 474 IRENILYGK--DDATMEEIT----RAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEA 547 (1077)
Q Consensus 474 i~~ni~~~~--~~~~~~~~~----~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~~~p~illlDEp 547 (1077)
-||||.+-. ...+.+++. +..+-+++-+| +.....++|-|++-|++.|-|.-.+|||||+||.
T Consensus 106 GreNi~l~~~~~G~~~~ei~~~~~eIieFaELG~f-----------i~~PvktYSSGM~aRLaFsia~~~~pdILllDEv 174 (249)
T COG1134 106 GRENIYLRGLILGLTRKEIDEKVDEIIEFAELGDF-----------IDQPVKTYSSGMYARLAFSVATHVEPDILLLDEV 174 (249)
T ss_pred hHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHH-----------hhCchhhccHHHHHHHHHhhhhhcCCCEEEEehh
Confidence 999996521 122333332 22333333333 3344568999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHH-hCCCeEEEEccCchhHhh-cCEEEEEECCEEEEecChhHHhc
Q 001438 548 TSALDAESENSVQEALDRV-MVGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELIS 607 (1077)
Q Consensus 548 ts~lD~~~~~~i~~~l~~~-~~~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~ 607 (1077)
.+.-|+.=.++=.+.+.++ .+++|+|+|||+++.+++ |||+++|++|+|...|+++|..+
T Consensus 175 lavGD~~F~~K~~~rl~e~~~~~~tiv~VSHd~~~I~~~Cd~~i~l~~G~i~~~G~~~~vi~ 236 (249)
T COG1134 175 LAVGDAAFQEKCLERLNELVEKNKTIVLVSHDLGAIKQYCDRAIWLEHGQIRMEGSPEEVIP 236 (249)
T ss_pred hhcCCHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhcCeeEEEeCCEEEEcCCHHHHHH
Confidence 9999999777777777776 678999999999999976 99999999999999999999875
|
|
| >COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.5e-31 Score=252.23 Aligned_cols=227 Identities=24% Similarity=0.433 Sum_probs=180.7
Q ss_pred cEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECC-----eeCCCCCHHH
Q 001438 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDG-----NNIKGLDLKW 455 (1077)
Q Consensus 381 ~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g-----~~~~~~~~~~ 455 (1077)
-++++++++.|.+.. -.+|+||++.|||..+|||+||||||||+++|.+-+.|+.|+|.++- .|+-.++..+
T Consensus 6 LL~V~~lsk~Yg~~~---gc~~vsF~l~PGeVLgiVGESGSGKtTLL~~is~rl~p~~G~v~Y~~r~~~~~dl~~msEae 82 (258)
T COG4107 6 LLSVSGLSKLYGPGK---GCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMRDGQPRDLYTMSEAE 82 (258)
T ss_pred ceeehhhhhhhCCCc---CccccceeecCCcEEEEEecCCCcHHhHHHHHhcccCCCCCeEEEEcCCCCchhHhhhchHH
Confidence 478899999997543 57999999999999999999999999999999999999999998865 2344455444
Q ss_pred H----hhheeEEccCCC--cc-----cccHHHHHh-cCCCCCCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCCh
Q 001438 456 L----RQQIGLVNQEPA--LF-----ATTIRENIL-YGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSG 523 (1077)
Q Consensus 456 ~----r~~i~~v~Q~~~--lf-----~~ti~~ni~-~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSg 523 (1077)
. |..-|+|.|+|. |- .+.|-|-+. .|.. .|-++... +.+|+++..- ..+.+.+.+.++||
T Consensus 83 RR~L~RTeWG~VhQnP~DGLRm~VSAG~NiGERlma~G~R--HYG~iR~~-----a~~WL~~VEI-~~~RiDD~PrtFSG 154 (258)
T COG4107 83 RRRLLRTEWGFVHQNPRDGLRMQVSAGGNIGERLMAIGAR--HYGNIRAE-----AQDWLEEVEI-DLDRIDDLPRTFSG 154 (258)
T ss_pred HHHHhhhccceeecCccccceeeeccCCccchhHHhhhhh--hhhhHHHH-----HHHHHHhccc-CcccccCcccccch
Confidence 3 345899999994 21 124444332 2222 23333221 2233433322 23467788899999
Q ss_pred HHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh--CCCeEEEEccCchhHhh-cCEEEEEECCEEEEec
Q 001438 524 GQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVM--VGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTG 600 (1077)
Q Consensus 524 Gqkqri~lARal~~~p~illlDEpts~lD~~~~~~i~~~l~~~~--~~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~g 600 (1077)
|++||+.|||-|...|+++++||||.+||...+.++.+.++.+- -+-.+++|||++..++- +||.+||++|+++|.|
T Consensus 155 GMqQRLQiARnLVt~PrLvfMDEPTGGLDVSVQARLLDllrgLv~~l~la~viVTHDl~VarLla~rlmvmk~g~vve~G 234 (258)
T COG4107 155 GMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLADRLMVMKQGQVVESG 234 (258)
T ss_pred HHHHHHHHHHHhccCCceEEecCCCCCcchhhHHHHHHHHHHHHHhcCceEEEEechhHHHHHhhhcceeecCCCEeccc
Confidence 99999999999999999999999999999999999999998874 37899999999999986 9999999999999999
Q ss_pred ChhHHhcCCCchHHHHHH
Q 001438 601 SHEELISNPNSAYAALVQ 618 (1077)
Q Consensus 601 ~~~~l~~~~~~~~~~~~~ 618 (1077)
-.+.++..+...|.++.-
T Consensus 235 LTDrvLDDP~hPYTQLLV 252 (258)
T COG4107 235 LTDRVLDDPHHPYTQLLV 252 (258)
T ss_pred cccccccCCCCchHHHHH
Confidence 999999999999998764
|
|
| >COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.1e-31 Score=269.22 Aligned_cols=203 Identities=25% Similarity=0.409 Sum_probs=155.1
Q ss_pred ccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHHHhhheeEEc-cCCCcc-cccHH
Q 001438 398 AIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIGLVN-QEPALF-ATTIR 475 (1077)
Q Consensus 398 ~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~-Q~~~lf-~~ti~ 475 (1077)
++.+|+||+|++|++++++||||+||||++|+|.|+..|++|.|.++|.+...-..+.+| ++++|. |...+. .-.+.
T Consensus 38 ~AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGll~p~~G~v~V~G~~Pf~~~~~~~~-~~~~v~gqk~ql~Wdlp~~ 116 (325)
T COG4586 38 EAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGKDPFRRREEYLR-SIGLVMGQKLQLWWDLPAL 116 (325)
T ss_pred hhhheeeeecCCCcEEEEEcCCCCcchhhHHHHhCccccCCCeEEecCcCcchhHHHHHH-HHHHHhhhhheeeeechhh
Confidence 478999999999999999999999999999999999999999999999877654334444 455543 322211 11132
Q ss_pred HHHhcCC--CCCCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHHhccCCCEEEEeCcCCCCCH
Q 001438 476 ENILYGK--DDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDA 553 (1077)
Q Consensus 476 ~ni~~~~--~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~~~p~illlDEpts~lD~ 553 (1077)
|-+..-. -+..+++.. .++..+.+. | +++..+..+...||-|||.|.-||.||+++|+||+|||||=+||.
T Consensus 117 ds~~v~~~Iy~Ipd~~F~--~r~~~l~ei---L--dl~~~lk~~vr~LSlGqRmraeLaaaLLh~p~VLfLDEpTvgLDV 189 (325)
T COG4586 117 DSLEVLKLIYEIPDDEFA--ERLDFLTEI---L--DLEGFLKWPVRKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDV 189 (325)
T ss_pred hhHHHHHHHHhCCHHHHH--HHHHHHHHH---h--cchhhhhhhhhhccchHHHHHHHHHHhcCCCcEEEecCCccCcch
Confidence 3222111 012222221 122222221 1 345556667779999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHh--CCCeEEEEccCchhHhh-cCEEEEEECCEEEEecChhHHhcC
Q 001438 554 ESENSVQEALDRVM--VGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELISN 608 (1077)
Q Consensus 554 ~~~~~i~~~l~~~~--~~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 608 (1077)
..+..|.+.+++.. .+.||++.||.++.+.. ||||++|+.|+++..|+.++|.+.
T Consensus 190 ~aq~~ir~Flke~n~~~~aTVllTTH~~~di~~lc~rv~~I~~Gqlv~dg~l~~l~~~ 247 (325)
T COG4586 190 NAQANIREFLKEYNEERQATVLLTTHIFDDIATLCDRVLLIDQGQLVFDGTLAQLQEQ 247 (325)
T ss_pred hHHHHHHHHHHHHHHhhCceEEEEecchhhHHHhhhheEEeeCCcEeecccHHHHHHH
Confidence 99999999998763 58999999999999865 999999999999999999998754
|
|
| >KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.5e-30 Score=313.74 Aligned_cols=222 Identities=31% Similarity=0.493 Sum_probs=181.6
Q ss_pred ccEEEEeEEEEcCCCC--CcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCC---CccEEEECCeeCCCCCHH
Q 001438 380 GHIEFKDVSFCYPSRP--DVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEP---LSGEILLDGNNIKGLDLK 454 (1077)
Q Consensus 380 ~~i~~~~v~~~y~~~~--~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~---~~G~i~~~g~~~~~~~~~ 454 (1077)
..++++|++..-++.. .+.+|+|||.+++|||+.||.||||||||||+++|+|-.+. .+|+|.+||++ .+.+
T Consensus 24 ~~~~~~~~~~~~~~~~~~~k~iL~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG~~---~~~~ 100 (613)
T KOG0061|consen 24 VKLSFRNLTLSSKEKSKKTKTILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNGRP---RDSR 100 (613)
T ss_pred ceeEEEEEEEEecCCCCccceeeeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEECCcc---Cchh
Confidence 4688999998876542 46799999999999999999999999999999999999874 79999999953 4567
Q ss_pred HHhhheeEEccCCCcccc-cHHHHHhcCC----CC-CCHHHHHHHHHHHhHHHHHhcCccchhhhhcC-CCCCCChHHHH
Q 001438 455 WLRQQIGLVNQEPALFAT-TIRENILYGK----DD-ATMEEITRAAKLSEAMSFISNLPERFETQVGE-RGIQLSGGQKQ 527 (1077)
Q Consensus 455 ~~r~~i~~v~Q~~~lf~~-ti~~ni~~~~----~~-~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~-~g~~LSgGqkq 527 (1077)
.+|+..|||+||..+++. ||+|++.|.. |. .+.++..+ +..+..+.+ .|.+=-||.+|. ....+|||||+
T Consensus 101 ~~~~~s~yV~QdD~l~~~LTV~EtL~f~A~lrlp~~~~~~~k~~--~V~~vi~~L-gL~~~~~t~ig~~~~rgiSGGErk 177 (613)
T KOG0061|consen 101 SFRKISGYVQQDDVLLPTLTVRETLRFSALLRLPSSLSKEEKRE--RVEEVISEL-GLEKCADTLIGNPGIRGLSGGERK 177 (613)
T ss_pred hhhheeEEEcccccccccccHHHHHHHHHHhcCCCCCCHHHHHH--HHHHHHHHc-CChhhccceecCCCCCccccchhh
Confidence 788999999999999977 9999998864 22 12222221 111221111 122335788874 34689999999
Q ss_pred HHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCeEEEEccCchh--HhhcCEEEEEECCEEEEecChhH
Q 001438 528 RIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLST--IRNADVIAVVQGRKIVKTGSHEE 604 (1077)
Q Consensus 528 ri~lARal~~~p~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~vtH~~~~--~~~~d~i~~l~~G~i~~~g~~~~ 604 (1077)
|++||.-++.||+||+||||||+||..+..++.+.|+++. +|||||+.=|+++. ....|++++|.+|+++..|++++
T Consensus 178 Rvsia~Ell~~P~iLflDEPTSGLDS~sA~~vv~~Lk~lA~~grtVi~tIHQPss~lf~lFD~l~lLs~G~~vy~G~~~~ 257 (613)
T KOG0061|consen 178 RVSIALELLTDPSILFLDEPTSGLDSFSALQVVQLLKRLARSGRTVICTIHQPSSELFELFDKLLLLSEGEVVYSGSPRE 257 (613)
T ss_pred HHHHHHHHHcCCCEEEecCCCCCcchhhHHHHHHHHHHHHhCCCEEEEEEeCCcHHHHHHHhHhhhhcCCcEEEecCHHH
Confidence 9999999999999999999999999999999999999874 69999999999985 46699999999999999999988
Q ss_pred Hhc
Q 001438 605 LIS 607 (1077)
Q Consensus 605 l~~ 607 (1077)
+.+
T Consensus 258 ~~~ 260 (613)
T KOG0061|consen 258 LLE 260 (613)
T ss_pred HHH
Confidence 753
|
|
| >COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.8e-29 Score=266.79 Aligned_cols=316 Identities=18% Similarity=0.204 Sum_probs=253.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccccCCchhHHHHHhhcHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH-
Q 001438 758 EHLSFGIMGERLTLRVREKMFSAILSNEIGWFDEMDNSSSILASRLESDATLLRTIVVDRSTILIQNFGLVTASFVIAF- 836 (1077)
Q Consensus 758 ~~~~~~~~~~~~~~~Lr~~l~~~llr~p~~FFD~~~~~~G~IlnR~s~D~~~i~~~l~~~l~~~~~~~~~~~~~i~i~~- 836 (1077)
+..+|..+++.+.+.+-.+.|.|+...++.|.-. ..+|-+.....+-...++..+-..+...+..++-+...+++.+
T Consensus 2 r~~~fs~v~q~a~r~la~~~F~h~~~Lsl~fHl~--r~TGglsR~ierGtkgI~~i~~~~l~~i~P~~~Ei~l~~vi~~~ 79 (497)
T COG5265 2 RDRLFSPVGQIAVRVLAYVTFFHLHSLSLRFHLE--RRTGGLSRAIERGTKGIETILRWILFNILPTLVEISLVAVILWR 79 (497)
T ss_pred chHhhhHHHHHHHHHHHHHHHHHHHhcchhhhhh--cccCceeeHhhcCcccHHHHHHHHHHHhhHHHHHHHHHHHHHHh
Confidence 3456788899999999999999999999999984 6666665555555555666666666666666655555555544
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhHHHHHHHcchHHHHHhcchHHHHHHHHHHhhhhhHHH
Q 001438 837 ILNWRITLVVVATYPLIISGHISEKLFFQGYGGNLSKAYLKANMLAAEAVSNIRTVAAFCSEDKVLELYSRELVEPSKRS 916 (1077)
Q Consensus 837 ~~~w~l~l~~l~~~Pl~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Etl~Gi~tIrAf~~e~~~~~~f~~~~~~~~~~~ 916 (1077)
.++|+.++++++++.+.+++.....-+--...+....+.+++++.+-++|-+-.||+.|+.|+.+..+|.+.++...++.
T Consensus 80 ~~~~~f~~~t~vtv~lY~~ftv~~s~wr~~~rr~~n~aDs~a~~~aidsLlnfEtvk~F~ne~~e~~r~~~~~~~Y~~a~ 159 (497)
T COG5265 80 VYGWWFALTTLVTVILYLLFTVIVSDWRTDFRRLMNNADSDANAKAIDSLLNFETVKYFGNEEYEAVRYDHALETYEKAA 159 (497)
T ss_pred hcccHHHHHHHHHHHHHHHhheeehhhhHHHHHhhhhhhhHHHHHHHHHHhhhhheeecCchhhhhhhcCchHHHHHHHH
Confidence 46898888888877776665544433333334455566677777788999999999999999999999999999999888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Q 001438 917 FIRGQIAGIFYGISQFFIFSSYGLALWYGSVLMGKELASFKSVMKSFMVLIVTALAMGETLALVPDLLKGNQMAASVFEV 996 (1077)
Q Consensus 917 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~ 996 (1077)
.+.....++.......+...+.......++..+..+.++.++++..-.++.....|+..+...+.++.++..-.++++.+
T Consensus 160 ~k~~~Sl~~Ln~gQ~~I~~~~l~~~m~~s~~~v~~g~~TvgD~V~~Nall~qls~Plnflg~~Yrei~q~ltdme~mfdL 239 (497)
T COG5265 160 IKVHVSLLVLNFGQTAIFSTGLRVMMTMSALGVEEGQLTVGDLVNVNALLFQLSIPLNFLGFSYREIRQALTDMEKMFDL 239 (497)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHhhcHHHHhhccCCchhHHhHHHHHhhhhhhhhhhHHHHHHHHHhhhhHHHHHHh
Confidence 87766666666666666666777777788888899999999999998889999999999999999999999999999999
Q ss_pred HcCCCCccCC-CCcccc-cccccEEEeeeeeeCCCCCcccccccceeeeeCCCEEEEECCCCCCHHHHHHHHhhccCCCC
Q 001438 997 LDRKTQVIGD-IGEELT-NVEGTIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTA 1074 (1077)
Q Consensus 997 l~~~~~~~~~-~~~~~~-~~~G~I~f~nVsf~Y~~~~~~~VLk~vsl~I~~GekVaIVGrTGsGKSTLi~lL~Rfyd~~~ 1074 (1077)
++.+.++... ..++.+ -..|.|.|+||+|+|.+ ..|+|+|+||+|++|+||||||+||+||||+..+|+||||+++
T Consensus 240 l~~~~~v~d~pda~~L~~~~~g~v~F~~V~F~y~~--~r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD~~s 317 (497)
T COG5265 240 LDVEAEVSDAPDAPPLWPVRLGAVAFINVSFAYDP--RRPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNS 317 (497)
T ss_pred hccchhhccCCCCccccccccceEEEEEEEeeccc--cchhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhCCcC
Confidence 9987776543 334445 34689999999999954 4578999999999999999999999999999999999999999
Q ss_pred CCC
Q 001438 1075 GKA 1077 (1077)
Q Consensus 1075 G~i 1077 (1077)
|+|
T Consensus 318 G~I 320 (497)
T COG5265 318 GSI 320 (497)
T ss_pred ceE
Confidence 986
|
|
| >KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=7.9e-29 Score=274.78 Aligned_cols=210 Identities=25% Similarity=0.395 Sum_probs=143.6
Q ss_pred CcccEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEE--CCeeCCCCCH--
Q 001438 378 LSGHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILL--DGNNIKGLDL-- 453 (1077)
Q Consensus 378 ~~~~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~--~g~~~~~~~~-- 453 (1077)
....+.++|++++|++ ..+++|..|++.+|+.+||+|+|||||||++++|.|-..|..=++.+ -.+++..-..
T Consensus 72 ~s~dvk~~sls~s~~g---~~l~kd~~~El~~g~rygLiG~nG~Gkst~L~~i~~~e~P~p~~~d~y~ls~e~~ps~~~a 148 (614)
T KOG0927|consen 72 ISRDVKIESLSLSFHG---VELIKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGREVPIPEHIDFYLLSREIEPSEKQA 148 (614)
T ss_pred ccccceeeeeeeccCC---ceeeeeeeEEecCCceEEEEcCCCCcHhHHHHHHhcCCCCCCcccchhhhcccCCCchHHH
Confidence 3456999999999974 45899999999999999999999999999999999988876544422 1111111000
Q ss_pred --------HHHhhheeEEccCCCcccccHHHHHhcCCCCCCHHHH---HH----------HHHHHhHHHHHhcCccch-h
Q 001438 454 --------KWLRQQIGLVNQEPALFATTIRENILYGKDDATMEEI---TR----------AAKLSEAMSFISNLPERF-E 511 (1077)
Q Consensus 454 --------~~~r~~i~~v~Q~~~lf~~ti~~ni~~~~~~~~~~~~---~~----------~~~~~~~~~~i~~l~~g~-~ 511 (1077)
.+.|.++.|. .|++.-..++...++. .+ ..+.+.. +.++ |. .
T Consensus 149 v~~v~~~~~~e~~rle~~-----------~E~l~~~~d~~~~~~l~~~~~r~~~~d~~~~~~k~~~i---l~gl--gf~~ 212 (614)
T KOG0927|consen 149 VQAVVMETDHERKRLEYL-----------AEDLAQACDDKEKDELDELYERLDEMDNDTFEAKAAKI---LHGL--GFLS 212 (614)
T ss_pred HHHHhhhhHHHHHHHHHH-----------HHHHHhhccchhhhHHHHHHHHHHhhCchhHHHHHHHH---HHhc--CCCH
Confidence 0111111111 1111111011000000 00 0111111 1111 11 2
Q ss_pred hhhcCCCCCCChHHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEccCchhHhh-cCEEEE
Q 001438 512 TQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRN-ADVIAV 590 (1077)
Q Consensus 512 t~~~~~g~~LSgGqkqri~lARal~~~p~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~vtH~~~~~~~-~d~i~~ 590 (1077)
........+||||||.|++|||||+.+|++|||||||++||.++..-+.+.|.+.... ++++++|.-+++.. |.+|+.
T Consensus 213 ~m~~k~~~~~SgGwrmR~aLAr~Lf~kP~LLLLDEPtnhLDleA~~wLee~L~k~d~~-~lVi~sh~QDfln~vCT~Ii~ 291 (614)
T KOG0927|consen 213 EMQDKKVKDLSGGWRMRAALARALFQKPDLLLLDEPTNHLDLEAIVWLEEYLAKYDRI-ILVIVSHSQDFLNGVCTNIIH 291 (614)
T ss_pred hHHHHHhhccCchHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHhccCc-eEEEEecchhhhhhHhhhhhe
Confidence 2334456789999999999999999999999999999999999999999999876433 89999999999987 999999
Q ss_pred EECCE-EEEecChhHHhc
Q 001438 591 VQGRK-IVKTGSHEELIS 607 (1077)
Q Consensus 591 l~~G~-i~~~g~~~~l~~ 607 (1077)
|++++ +...|++++...
T Consensus 292 l~~kkl~~y~Gnydqy~~ 309 (614)
T KOG0927|consen 292 LDNKKLIYYEGNYDQYVK 309 (614)
T ss_pred ecccceeeecCCHHHHhh
Confidence 99999 677888887764
|
|
| >PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.9e-30 Score=252.51 Aligned_cols=136 Identities=43% Similarity=0.744 Sum_probs=118.7
Q ss_pred ccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHHHhhheeEEccCCCcccc-cHHHHH
Q 001438 400 FDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIGLVNQEPALFAT-TIRENI 478 (1077)
Q Consensus 400 l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~-ti~~ni 478 (1077)
|+|+||++++||+++|+|+||||||||+++|+|.++|++|+|.++|.++...+....|+.++|++|++.++++ |++||
T Consensus 1 L~~v~~~i~~g~~~~i~G~nGsGKStLl~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~tv~~~- 79 (137)
T PF00005_consen 1 LKNVSLEIKPGEIVAIVGPNGSGKSTLLKALAGLLPPDSGSILINGKDISDIDIEELRRRIGYVPQDPQLFPGLTVREN- 79 (137)
T ss_dssp EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSSHESEEEEEETTEEGTTSHHHHHHHTEEEEESSHCHHTTSBHHHH-
T ss_pred CCceEEEEcCCCEEEEEccCCCccccceeeecccccccccccccccccccccccccccccccccccccccccccccccc-
Confidence 6899999999999999999999999999999999999999999999999998888999999999999999987 79999
Q ss_pred hcCCCCCCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHHhccCCCEEEEeCcCC
Q 001438 479 LYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATS 549 (1077)
Q Consensus 479 ~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~~~p~illlDEpts 549 (1077)
...+++.++++..+. .+..++.++.+...||||||||++||||++++|+++||||||+
T Consensus 80 ------~~~~~~~~~l~~l~~-------~~~~~~~~~~~~~~LS~Ge~~rl~la~al~~~~~llllDEPt~ 137 (137)
T PF00005_consen 80 ------ESDERIEEVLKKLGL-------EDLLDRKIGQRASSLSGGEKQRLALARALLKNPKLLLLDEPTN 137 (137)
T ss_dssp ------HHHHHHHHHHHHTTH-------GGGTGSBGTSCGGGSCHHHHHHHHHHHHHHTTSSEEEEESTTT
T ss_pred ------ccccccccccccccc-------ccccccccccccchhhHHHHHHHHHHHHHHcCCCEEEEeCCCC
Confidence 122334444433332 2235677888889999999999999999999999999999996
|
ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D .... |
| >KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.8e-25 Score=245.69 Aligned_cols=439 Identities=16% Similarity=0.201 Sum_probs=262.5
Q ss_pred HHHHHHHHHHHHHHHHHhCCc---hhhccCCChhHH---HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001438 129 GERQAAKMRMAYLRSMLNQDI---SLFDTEASTGEV---ISAITSDIIVVQDALSEKVGNFMHYISRFLGGFIIGFARVW 202 (1077)
Q Consensus 129 ~~~~~~~lr~~~~~~ll~~~~---~~f~~~~~~G~i---~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (1077)
-.+++...|.++.++++++=. .||.-...-|.+ =+.+++|+..+.+.......++.--+.-++..-..+.-..-
T Consensus 181 e~klaLafrtrL~~h~y~~Y~snqTyY~Vsn~d~~i~n~D~sLTeDI~~Fs~svahLysnLtKP~lDl~l~s~~L~~s~~ 260 (728)
T KOG0064|consen 181 ESKLALAFRTRLTRHAYDMYLSNQTFYKVSNLDSVIENADNSLTEDIAKFSDSVAHLYSNLTKPVLDLILISFTLLDSAT 260 (728)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCceEEEecccchhcCccchhHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhhc
Confidence 345556666666666655422 444321122333 34699999999888776555555444433222111111111
Q ss_pred HHH--HHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHH
Q 001438 203 QIS--LVTLS--IVPLIALAGGMYAYVTIGLIARVRKSYVKAGEIAEEVIGNVRTVQAFAGEDKAVKVYKEALSNTYKYG 278 (1077)
Q Consensus 203 ~l~--l~~l~--~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~ 278 (1077)
..+ .+.++ .+.+-..+...+.....+.........+....+=+..+++-..|..|+..+.+.++.++..+......
T Consensus 261 s~g~~~~~~~~lvv~lTa~iLr~~sP~Fg~Lv~eeA~r~g~lr~~Hs~ii~NsEEIAfy~GhkvE~~ql~~sy~~L~~qm 340 (728)
T KOG0064|consen 261 SVGAAGITLAGLVVYLTAFILRAVSPKFGKLVAEEAARKGYLRYLHSNIITNSEEIAFYGGHKVELTQVDESYNRLVEQM 340 (728)
T ss_pred cccccchhhhhhHHHHHHHHHHHhCCchhhHHHHHHhhccHHHHHHHHHhccHHHHHhhcccHHHHHHHHHHHHHHHHHH
Confidence 111 10001 11111111111222222222222333333444567889999999999999999998888776655543
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------hcccC---HHH----HHHHHH-HHHHHHHHHHHh
Q 001438 279 RKAGLAKGLGLGSMHCVLFLSWSLLVWYVSVVVH------------KHISN---GGE----SFTTML-NVVIAGLSLGQA 338 (1077)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~------------~~~~~---~g~----~~~~~~-~~~~~~~~l~~~ 338 (1077)
......+.+..-+-+++ .=..|-|.-++. .+... .+. -|++-- .+.....++..+
T Consensus 341 ~li~k~r~~YiMleqF~-----mKYvWsg~GlvmvsiPI~~~t~~s~~~~~~~e~~~srt~~f~t~r~LL~saAdAieRl 415 (728)
T KOG0064|consen 341 NLIFKVRLWYIMLEQFV-----MKYTWSGTGLVMVSIPILTSTLASEGTLQLSEEGNSRTKEFITNRRLLLSAADAIERL 415 (728)
T ss_pred HHHHHHHHHHHHHHHHH-----HHHhhccCceEEEEeeeeecccCCCCcccccccchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 33222222222222221 122333322211 11110 111 122211 122233445555
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcc---Cc--------cccccccc-------CCCC-----CCCcccEEEEeEEEEcCCCC
Q 001438 339 APDITAFIRAKAAAYPIFEMIER---DT--------MSKASSKT-------GRKL-----DKLSGHIEFKDVSFCYPSRP 395 (1077)
Q Consensus 339 ~~~~~~~~~~~~s~~ri~~~l~~---~~--------~~~~~~~~-------~~~~-----~~~~~~i~~~~v~~~y~~~~ 395 (1077)
...+..+.+-..-..|+++.++. .. ..++.+.. +.+. ......|.++||-.--|..
T Consensus 416 MssyKeItqLaGyt~Rv~~mf~v~~dv~~g~~~k~~v~e~~~~~~~~e~r~s~~l~~~~~i~~~~gI~lenIpvItP~~- 494 (728)
T KOG0064|consen 416 MSSYKEITQLAGYTNRVFTMFSVLHDVHKGNYNKTAVPEILSSRTIDESRNSNPLPTTDAIRNFNGIILENIPVITPAG- 494 (728)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHhcccccccccCchhhccCccccccCCcCCccchhhcccceEEecCceeccCc-
Confidence 55566666666666677654421 00 00000000 0000 0012348899988877754
Q ss_pred CcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHHHhhheeEEccCCCcccccHH
Q 001438 396 DVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIGLVNQEPALFATTIR 475 (1077)
Q Consensus 396 ~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~ 475 (1077)
..+...++|+|++|-.+.|.||||||||+|.++|.|+.|...|...+-- +.++-|+||.|++=-||+|
T Consensus 495 -~vvv~~Ltf~i~~G~hLLItGPNGCGKSSLfRILggLWPvy~g~L~~P~-----------~~~mFYIPQRPYms~gtlR 562 (728)
T KOG0064|consen 495 -DVLVPKLTFQIEPGMHLLITGPNGCGKSSLFRILGGLWPVYNGLLSIPR-----------PNNIFYIPQRPYMSGGTLR 562 (728)
T ss_pred -ceeecceeEEecCCceEEEECCCCccHHHHHHHHhccCcccCCeeecCC-----------CcceEeccCCCccCcCccc
Confidence 2477999999999999999999999999999999999999888776533 2359999999998888999
Q ss_pred HHHhcCC-------CCCCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHHhccCCCEEEEeCcC
Q 001438 476 ENILYGK-------DDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEAT 548 (1077)
Q Consensus 476 ~ni~~~~-------~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~~~p~illlDEpt 548 (1077)
|-|.|+. ...++++++..+....+...+ +-..|.|... +--.-||||+|||+++||.+|++|+.-+|||+|
T Consensus 563 DQIIYPdS~e~~~~kg~~d~dL~~iL~~v~L~~i~-qr~~g~da~~-dWkd~LsgGekQR~~mARm~yHrPkyalLDEcT 640 (728)
T KOG0064|consen 563 DQIIYPDSSEQMKRKGYTDQDLEAILDIVHLEHIL-QREGGWDAVR-DWKDVLSGGEKQRMGMARMFYHRPKYALLDECT 640 (728)
T ss_pred ceeecCCcHHHHHhcCCCHHHHHHHHHHhhHHHHH-HhccChhhhc-cHHhhccchHHHHHHHHHHHhcCcchhhhhhhh
Confidence 9999874 345677787777777765433 3344554432 233469999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHhCCCeEEEEccCchhHhhcCEEE
Q 001438 549 SALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRNADVIA 589 (1077)
Q Consensus 549 s~lD~~~~~~i~~~l~~~~~~~t~i~vtH~~~~~~~~d~i~ 589 (1077)
||+.++.|..+.++.++. |.+.|-||||.+..+.-...+
T Consensus 641 sAvsidvE~~i~~~ak~~--gi~llsithrpslwk~h~~ll 679 (728)
T KOG0064|consen 641 SAVSIDVEGKIFQAAKDA--GISLLSITHRPSLWKYHTHLL 679 (728)
T ss_pred cccccchHHHHHHHHHhc--CceEEEeecCccHHHHHHHHH
Confidence 999999999999988764 889999999999876544433
|
|
| >COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.8e-28 Score=283.26 Aligned_cols=203 Identities=29% Similarity=0.417 Sum_probs=166.6
Q ss_pred cccEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHHHhh
Q 001438 379 SGHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQ 458 (1077)
Q Consensus 379 ~~~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~ 458 (1077)
+..++++|+++.|++. +++++++||.|.+|+++||+||||+|||||+++|+|...|.+|+|.+.-. +
T Consensus 319 ~~vl~~~~~~~~y~~~--~~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~-v---------- 385 (530)
T COG0488 319 KLVLEFENVSKGYDGG--RLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGET-V---------- 385 (530)
T ss_pred CeeEEEeccccccCCC--ceeecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCCc-e----------
Confidence 4568999999999753 46899999999999999999999999999999999999999999987542 1
Q ss_pred heeEEccCC-Ccccc-cHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHHhc
Q 001438 459 QIGLVNQEP-ALFAT-TIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIV 536 (1077)
Q Consensus 459 ~i~~v~Q~~-~lf~~-ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~ 536 (1077)
++||.+|+. .+++. |+.|++.-..+.....++...+.... ++.. .+......||||||-|+.||+.++
T Consensus 386 ~igyf~Q~~~~l~~~~t~~d~l~~~~~~~~e~~~r~~L~~f~-------F~~~---~~~~~v~~LSGGEk~Rl~La~ll~ 455 (530)
T COG0488 386 KIGYFDQHRDELDPDKTVLEELSEGFPDGDEQEVRAYLGRFG-------FTGE---DQEKPVGVLSGGEKARLLLAKLLL 455 (530)
T ss_pred EEEEEEehhhhcCccCcHHHHHHhhCccccHHHHHHHHHHcC-------CChH---HHhCchhhcCHhHHHHHHHHHHhc
Confidence 599999997 44444 99999986655444444443333221 2211 124556689999999999999999
Q ss_pred cCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEccCchhHhh-cCEEEEEECCEEEEe-cChhHHhc
Q 001438 537 KNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKT-GSHEELIS 607 (1077)
Q Consensus 537 ~~p~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~-g~~~~l~~ 607 (1077)
.+|.+|||||||+.||.++...+.++|.+. .-|+|+|||+..++.. |++|+.+++ ++... |++++..+
T Consensus 456 ~~pNvLiLDEPTNhLDi~s~~aLe~aL~~f--~Gtvl~VSHDr~Fl~~va~~i~~~~~-~~~~~~g~y~~y~~ 525 (530)
T COG0488 456 QPPNLLLLDEPTNHLDIESLEALEEALLDF--EGTVLLVSHDRYFLDRVATRIWLVED-KVEEFEGGYEDYLE 525 (530)
T ss_pred cCCCEEEEcCCCccCCHHHHHHHHHHHHhC--CCeEEEEeCCHHHHHhhcceEEEEcC-ceeEcCCCHHHHHH
Confidence 999999999999999999999999999876 4599999999999987 999999999 77665 78777654
|
|
| >COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.5e-29 Score=241.80 Aligned_cols=188 Identities=23% Similarity=0.398 Sum_probs=154.9
Q ss_pred EEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHHHhhhee
Q 001438 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIG 461 (1077)
Q Consensus 382 i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 461 (1077)
++.+|++..-. +..++.++||++.+||.+-|.||||||||||+++|+|+++|++|+|+++|.+++... +..++.+-
T Consensus 3 L~a~~L~~~R~---e~~lf~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~p~~G~v~~~~~~i~~~~-~~~~~~l~ 78 (209)
T COG4133 3 LEAENLSCERG---ERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNVR-ESYHQALL 78 (209)
T ss_pred chhhhhhhccC---cceeecceeEEEcCCCEEEEECCCCCcHHHHHHHHHcccCCCCCeEEecCCCCccch-hhHHHHHH
Confidence 45567776543 346899999999999999999999999999999999999999999999999887643 33467788
Q ss_pred EEccCCCcccc-cHHHHHhcCCC---CCCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHHhcc
Q 001438 462 LVNQEPALFAT-TIRENILYGKD---DATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVK 537 (1077)
Q Consensus 462 ~v~Q~~~lf~~-ti~~ni~~~~~---~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~~ 537 (1077)
|+..+|-+=+. |++||+.|-.+ ..+.+.+.+|++.+++.++ +.+| + .+||-|||+|+||||-.+.
T Consensus 79 yLGH~~giK~eLTa~ENL~F~~~~~~~~~~~~i~~Al~~vgL~g~-~dlp------~----~~LSAGQqRRvAlArL~ls 147 (209)
T COG4133 79 YLGHQPGIKTELTALENLHFWQRFHGSGNAATIWEALAQVGLAGL-EDLP------V----GQLSAGQQRRVALARLWLS 147 (209)
T ss_pred HhhccccccchhhHHHHHHHHHHHhCCCchhhHHHHHHHcCcccc-cccc------h----hhcchhHHHHHHHHHHHcC
Confidence 99888888655 99999998643 1345778888887766542 2333 2 3799999999999999999
Q ss_pred CCCEEEEeCcCCCCCHHHHHHHHHHHHHH-hCCCeEEEEccCchhHhh
Q 001438 538 NPSILLLDEATSALDAESENSVQEALDRV-MVGRTTVVVAHRLSTIRN 584 (1077)
Q Consensus 538 ~p~illlDEpts~lD~~~~~~i~~~l~~~-~~~~t~i~vtH~~~~~~~ 584 (1077)
.+++.|||||+++||.+....+...+... .+|-.||..||+.-.+..
T Consensus 148 ~~pLWiLDEP~taLDk~g~a~l~~l~~~H~~~GGiVllttHq~l~~~~ 195 (209)
T COG4133 148 PAPLWILDEPFTALDKEGVALLTALMAAHAAQGGIVLLTTHQPLPIAS 195 (209)
T ss_pred CCCceeecCcccccCHHHHHHHHHHHHHHhcCCCEEEEecCCccCCCc
Confidence 99999999999999999999998888764 468899999998766543
|
|
| >COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.4e-29 Score=236.45 Aligned_cols=204 Identities=28% Similarity=0.391 Sum_probs=151.6
Q ss_pred cEEEEeEEEEcC----CCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCe----eCCCCC
Q 001438 381 HIEFKDVSFCYP----SRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGN----NIKGLD 452 (1077)
Q Consensus 381 ~i~~~~v~~~y~----~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~----~~~~~~ 452 (1077)
.+.++|++++|. +.-..++++|+||+++.||++++-||||||||||+++|-+-|.|++|+|.+.-. |+....
T Consensus 4 ~l~v~~~~KtFtlH~q~Gi~LpV~~~vslsV~aGECvvL~G~SG~GKStllr~LYaNY~~d~G~I~v~H~g~~vdl~~a~ 83 (235)
T COG4778 4 PLNVSNVSKTFTLHQQGGVRLPVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHEGEWVDLVTAE 83 (235)
T ss_pred eeeeecchhheEeeecCCEEeeeeeceeEEecCccEEEeeCCCCCcHHHHHHHHHhccCCCCceEEEEeCcchhhhhccC
Confidence 367788877762 112347999999999999999999999999999999999999999999998432 333333
Q ss_pred HH---HH-hhheeEEccCCCcccc-cHHHHHh-----cCCCCCCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCC
Q 001438 453 LK---WL-RQQIGLVNQEPALFAT-TIRENIL-----YGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLS 522 (1077)
Q Consensus 453 ~~---~~-r~~i~~v~Q~~~lf~~-ti~~ni~-----~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LS 522 (1077)
+. +. |+.||||+|---..+- +-.|-+. .|.+ .+..-.++ ..+... .++|+.+... .+.++|
T Consensus 84 pr~vl~vRr~TiGyVSQFLRviPRV~aLdVvaePll~~gv~--~~~a~~~a---~~Ll~r-LnlperLW~L---aPaTFS 154 (235)
T COG4778 84 PREVLEVRRTTIGYVSQFLRVIPRVSALDVVAEPLLARGVP--REVARAKA---ADLLTR-LNLPERLWSL---APATFS 154 (235)
T ss_pred hHHHHHHHHhhhHHHHHHHHhccCcchHHHHHhHHHHcCCC--HHHHHHHH---HHHHHH-cCCCHHHhcC---CCcccC
Confidence 33 23 4569999996443332 2223222 2221 11111112 222222 2578777654 467999
Q ss_pred hHHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCeEEEEccCchhHhh-cCEEEEEEC
Q 001438 523 GGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLSTIRN-ADVIAVVQG 593 (1077)
Q Consensus 523 gGqkqri~lARal~~~p~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~vtH~~~~~~~-~d~i~~l~~ 593 (1077)
||++||+.|||.++-|-+||+|||||++||..+++.+.+.|.+.+ +|..+|=|-|+-+.-+. |||++-|..
T Consensus 155 GGEqQRVNIaRgfivd~pILLLDEPTasLDa~Nr~vVveli~e~Ka~GaAlvGIFHDeevre~vadR~~~~~~ 227 (235)
T COG4778 155 GGEQQRVNIARGFIVDYPILLLDEPTASLDATNRAVVVELIREAKARGAALVGIFHDEEVREAVADRLLDVSA 227 (235)
T ss_pred CchheehhhhhhhhccCceEEecCCcccccccchHHHHHHHHHHHhcCceEEEeeccHHHHHHHhhheeeccc
Confidence 999999999999999999999999999999999999999998764 69999999999887665 999987643
|
|
| >cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.4e-28 Score=259.87 Aligned_cols=191 Identities=26% Similarity=0.358 Sum_probs=126.6
Q ss_pred cccccceeEEecCCcEEEEEcCCCCcHHHHH-HHHhcccCCCccEEEEC-C------eeCCCC---CHHHHhh-heeEEc
Q 001438 397 VAIFDKFCLDIPAGKIVALVGGSGSGKSTVI-SLIERFYEPLSGEILLD-G------NNIKGL---DLKWLRQ-QIGLVN 464 (1077)
Q Consensus 397 ~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~-~~l~g~~~~~~G~i~~~-g------~~~~~~---~~~~~r~-~i~~v~ 464 (1077)
..+|+|+||+|++||+++|+||||||||||+ ..+. .+|++.+. + ..+... .....+. ..++..
T Consensus 8 ~~~l~~vsl~i~~Ge~~~l~G~sGsGKSTL~~~~i~-----~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (226)
T cd03270 8 EHNLKNVDVDIPRNKLVVITGVSGSGKSSLAFDTIY-----AEGQRRYVESLSAYARQFLGQMDKPDVDSIEGLSPAIAI 82 (226)
T ss_pred hhccccceeecCCCcEEEEEcCCCCCHHHHHHHHHH-----HHHHHHHhhcccchhhhhhcccCccccccccCCCceEEe
Confidence 4689999999999999999999999999996 4432 13433221 0 011000 0011111 234444
Q ss_pred cCCCc-cc-c-c---HHHHHhcCCCCCCHHHHHHHHHHHhHHHHHhcCccchhh-hhcCCCCCCChHHHHHHHHHHHhcc
Q 001438 465 QEPAL-FA-T-T---IRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFET-QVGERGIQLSGGQKQRIAISRAIVK 537 (1077)
Q Consensus 465 Q~~~l-f~-~-t---i~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t-~~~~~g~~LSgGqkqri~lARal~~ 537 (1077)
|++.. .+ . + +.+...+-......+...+. .+.++.+ |+.. .......+||||||||++||||++.
T Consensus 83 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~------~~~l~~~--~l~~~~~~~~~~~LSgG~~qrv~laral~~ 154 (226)
T cd03270 83 DQKTTSRNPRSTVGTVTEIYDYLRLLFARVGIRER------LGFLVDV--GLGYLTLSRSAPTLSGGEAQRIRLATQIGS 154 (226)
T ss_pred cCCCCCCCCCccHHHHHHHHHHHHHHhhhhhHHHH------HHHHHHC--CCCcccccCccCcCCHHHHHHHHHHHHHHh
Confidence 54431 11 1 2 22222110000000111111 1122222 2222 3566788999999999999999999
Q ss_pred CC--CEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCeEEEEccCchhHhhcCEEEEE------ECCEEEEec
Q 001438 538 NP--SILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLSTIRNADVIAVV------QGRKIVKTG 600 (1077)
Q Consensus 538 ~p--~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~vtH~~~~~~~~d~i~~l------~~G~i~~~g 600 (1077)
+| +++||||||++||+.+.+.+.+.|+++. +|.|+|+|||+++.+..||+|++| ++|+|+++|
T Consensus 155 ~p~~~llllDEPt~gLD~~~~~~l~~~l~~~~~~g~tii~itH~~~~~~~~d~i~~l~~~~~~~~G~iv~~g 226 (226)
T cd03270 155 GLTGVLYVLDEPSIGLHPRDNDRLIETLKRLRDLGNTVLVVEHDEDTIRAADHVIDIGPGAGVHGGEIVAQG 226 (226)
T ss_pred CCCCCEEEEeCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEEeCHHHHHhCCEEEEeCCCccccCCEEEecC
Confidence 98 5999999999999999999999998864 589999999999998889999999 999999986
|
Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. |
| >cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.5e-27 Score=256.54 Aligned_cols=193 Identities=27% Similarity=0.431 Sum_probs=141.6
Q ss_pred cccceeEEecCCcEEEEEcCCCCcHHHHHHHHh-----cc-c----CCCcc-----------EEEECCeeCCCCC---H-
Q 001438 399 IFDKFCLDIPAGKIVALVGGSGSGKSTVISLIE-----RF-Y----EPLSG-----------EILLDGNNIKGLD---L- 453 (1077)
Q Consensus 399 ~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~-----g~-~----~~~~G-----------~i~~~g~~~~~~~---~- 453 (1077)
.|+|++++|+.|.+++|.|+||||||||++.++ +. . .|..+ -|.+|..+|..-+ +
T Consensus 10 nl~~v~~~ip~g~~~~vtGvSGsGKStL~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~vdq~pi~~~~rs~~~ 89 (261)
T cd03271 10 NLKNIDVDIPLGVLTCVTGVSGSGKSSLINDTLYPALARRLHLKKEQPGNHDRIEGLEHIDKVIVIDQSPIGRTPRSNPA 89 (261)
T ss_pred cCCCceeeccCCcEEEEECCCCCchHHHHHHHHHHHHHHHhcccccCCCcccccccccccCceEEecCCcCCCCCCCcHH
Confidence 589999999999999999999999999998653 11 1 12211 3666766664321 1
Q ss_pred ------HHHhh----------------heeEEccCCCc-ccccHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHhcCccch
Q 001438 454 ------KWLRQ----------------QIGLVNQEPAL-FATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERF 510 (1077)
Q Consensus 454 ------~~~r~----------------~i~~v~Q~~~l-f~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~ 510 (1077)
+.+|+ .+.|..++... .+.|+.||+.|..... ++.++. +.++.+ |+
T Consensus 90 ty~~~~~~ir~~fC~~C~G~r~~~~~l~~~~~g~~i~~v~~ltv~e~~~~~~~~~---~~~~~~------~~L~~v--gL 158 (261)
T cd03271 90 TYTGVFDEIRELFCEVCKGKRYNRETLEVRYKGKSIADVLDMTVEEALEFFENIP---KIARKL------QTLCDV--GL 158 (261)
T ss_pred HHHHHHHHHHHhcCccccccccCHHHHhcCcCCCCHHHHhcCCHHHHHHHHHhhh---hHHHHH------HHHHHc--CC
Confidence 11221 24455555443 3447777776543211 111111 122222 34
Q ss_pred hh-hhcCCCCCCChHHHHHHHHHHHhccC---CCEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCeEEEEccCchhHhhc
Q 001438 511 ET-QVGERGIQLSGGQKQRIAISRAIVKN---PSILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLSTIRNA 585 (1077)
Q Consensus 511 ~t-~~~~~g~~LSgGqkqri~lARal~~~---p~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~vtH~~~~~~~~ 585 (1077)
.. ..++...+||||||||++|||+|+++ |+++||||||++||++..+.+.+.|+++. +|.|+|+|||+++.++.|
T Consensus 159 ~~l~l~~~~~~LSgGe~QRl~LAraL~~~~~~p~lllLDEPtsgLD~~~~~~l~~~L~~l~~~g~tvIiitH~~~~i~~a 238 (261)
T cd03271 159 GYIKLGQPATTLSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVDKGNTVVVIEHNLDVIKCA 238 (261)
T ss_pred chhhhcCccccCCHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhC
Confidence 33 36788889999999999999999996 79999999999999999999999998875 589999999999999899
Q ss_pred CEEEEE------ECCEEEEecCh
Q 001438 586 DVIAVV------QGRKIVKTGSH 602 (1077)
Q Consensus 586 d~i~~l------~~G~i~~~g~~ 602 (1077)
|++++| ++|+|+++|++
T Consensus 239 D~ii~Lgp~~g~~~G~iv~~Gt~ 261 (261)
T cd03271 239 DWIIDLGPEGGDGGGQVVASGTP 261 (261)
T ss_pred CEEEEecCCcCCCCCEEEEeCCC
Confidence 999999 89999999974
|
Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases. |
| >COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.1e-24 Score=240.79 Aligned_cols=364 Identities=16% Similarity=0.153 Sum_probs=288.4
Q ss_pred HHHHHHhhHHhHHHHHHHHHHHhhccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001438 703 ICAIIAGAQMPLFALGVSQALVAYYMDWDTTQREVKKITILFCCAAVITVIVHAIEHLSFGIMGERLTLRVREKMFSAIL 782 (1077)
Q Consensus 703 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~Lr~~l~~~ll 782 (1077)
.++.+.-+.+...++.+-++.|......+ ....-...++.+++.++.+++-.+|...+.+++++.-..|+.+.|...+
T Consensus 30 lfS~~INiL~L~~~lyMLQVyDRVL~S~s--~~TLv~Ltvlal~ly~~~glLd~iR~~~l~Rig~~lD~~L~~~v~~a~~ 107 (580)
T COG4618 30 LFSAVINLLALTGPLYMLQVYDRVLPSRS--VPTLVMLTVLALGLYAFQGLLDAIRSRVLVRIGERLDRQLNGPVFAASF 107 (580)
T ss_pred HHHHHHHHHHHhhhHHHHHHHhhhccCCC--cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHH
Confidence 33444444455556666677765544221 1222233344556666778888999999999999999999999999998
Q ss_pred cCCccccccccCCchhHHHHHhhcHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 001438 783 SNEIGWFDEMDNSSSILASRLESDATLLRTIVVDRSTILIQNFGLVTASFVIAFILNWRITLVVVATYPLIISGHISEKL 862 (1077)
Q Consensus 783 r~p~~FFD~~~~~~G~IlnR~s~D~~~i~~~l~~~l~~~~~~~~~~~~~i~i~~~~~w~l~l~~l~~~Pl~i~~~~~~~~ 862 (1077)
++|..--- .|+=. ---+|.++++.++...-...+...-..=.-+.++|.++|++.+..++...+++...++..+
T Consensus 108 ~~~l~~~~-----~g~~~-Q~LrDL~qvR~Fltg~g~~A~fDaPW~P~yl~v~fl~Hp~lG~~a~~ga~iLv~la~ln~~ 181 (580)
T COG4618 108 SAPLLRRG-----SGDGL-QPLRDLDQVRQFLTGTGLTAFFDAPWMPLYLAVIFLFHPWLGLIALAGAIILVVLALLNER 181 (580)
T ss_pred hhHHhhcC-----CCccc-cchhhHHHHHHHHcCCCcchhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77665432 22111 1236999999999886555544443444456667778888888888888777777788777
Q ss_pred HHHhhhhhHHHHHHHHhHHHHHHHcchHHHHHhcchHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001438 863 FFQGYGGNLSKAYLKANMLAAEAVSNIRTVAAFCSEDKVLELYSRELVEPSKRSFIRGQIAGIFYGISQFFIFSSYGLAL 942 (1077)
Q Consensus 863 ~~~~~~~~~~~~~~~~~~~~~Etl~Gi~tIrAf~~e~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 942 (1077)
..++-..+.++...+.+..++-+..|..+|+|+|+.....+++.+....+.....+..-..+.+.+++-.+-......++
T Consensus 182 ~t~~p~~eA~~~~~~~~~~~~a~~RNAEvi~AMGM~~~l~~rW~~~~~~~L~~~~~asd~~~~~~~~Sr~~Rm~lQs~iL 261 (580)
T COG4618 182 ATRKPLKEASEASIRANQLADATLRNAEVIEAMGMLGNLAKRWGRFNAAYLSAQERASDRNGAFGALSRALRMALQSAVL 261 (580)
T ss_pred HhhccHHHHHHHHHHHHHHHHHHhhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777788888888999999999999999999999999998888877777777777788888888888889999999
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHcCCCCccCCCCcccccccccEEEee
Q 001438 943 WYGSVLMGKELASFKSVMKSFMVLIVTALAMGETLALVPDLLKGNQMAASVFEVLDRKTQVIGDIGEELTNVEGTIELRG 1022 (1077)
Q Consensus 943 ~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~~G~I~f~n 1022 (1077)
-.|++++..+++|.|.+++....+.....|+-........+..+..+-.|+.+++...|+..+. -+.|..+|.+..++
T Consensus 262 g~GA~Lvi~ge~t~G~mIA~SIl~gRaLaPid~aI~~Wkq~~~Ar~s~~Rl~~lL~~~p~~~~~--m~LP~P~g~L~Ve~ 339 (580)
T COG4618 262 GLGAWLVIKGEITPGMMIAGSILSGRALAPIDLAIANWKQFVAARQSYKRLNELLAELPAAAER--MPLPAPQGALSVER 339 (580)
T ss_pred hcceeeEEcCcCCcchhhHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHhCccccCC--CCCCCCCceeeEee
Confidence 9999999999999999998888888888899999999999999999999999999876654432 34456689999999
Q ss_pred eeeeCCCCCcccccccceeeeeCCCEEEEECCCCCCHHHHHHHHhhccCCCCCCC
Q 001438 1023 VHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKA 1077 (1077)
Q Consensus 1023 Vsf~Y~~~~~~~VLk~vsl~I~~GekVaIVGrTGsGKSTLi~lL~Rfyd~~~G~i 1077 (1077)
+++.=|+. ..|+|+|+||+++|||-+|||||||||||||..+|.+.+.|.+|.|
T Consensus 340 l~~~PPg~-~~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p~~G~V 393 (580)
T COG4618 340 LTAAPPGQ-KKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSV 393 (580)
T ss_pred eeecCCCC-CCcceecceeEecCCceEEEECCCCccHHHHHHHHHcccccCCCcE
Confidence 99965544 5789999999999999999999999999999999999999999986
|
|
| >cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.3e-27 Score=249.16 Aligned_cols=164 Identities=24% Similarity=0.338 Sum_probs=130.2
Q ss_pred cceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCc---------cEEEECCeeCCCCCHHHHhhheeEEccCCCccc
Q 001438 401 DKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLS---------GEILLDGNNIKGLDLKWLRQQIGLVNQEPALFA 471 (1077)
Q Consensus 401 ~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~---------G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~ 471 (1077)
+++++++++| +++|+||||||||||+++|.|+.+|.. |++.++|+++... ..+++++|++|+|..+
T Consensus 14 ~~~~l~~~~g-~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~v~~vfq~~~~~- 88 (197)
T cd03278 14 DKTTIPFPPG-LTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRKP---ANFAEVTLTFDNSDGR- 88 (197)
T ss_pred CCeeeecCCC-cEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCCCCC---CceEEEEEEEEcCCCc-
Confidence 6789999999 999999999999999999999986653 4677777766432 2356899999999877
Q ss_pred ccHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHHhc----cCCCEEEEeCc
Q 001438 472 TTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIV----KNPSILLLDEA 547 (1077)
Q Consensus 472 ~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~----~~p~illlDEp 547 (1077)
|+.. ..+++.+++ +. ++. ......+||||||||++|||+++ .+|++++||||
T Consensus 89 --------~~~~--~~~~~~~~l---------~~-~~~----~~~~~~~LS~G~kqrl~la~~l~~~~~~~~~illlDEP 144 (197)
T cd03278 89 --------YSII--SQGDVSEII---------EA-PGK----KVQRLSLLSGGEKALTALALLFAIFRVRPSPFCVLDEV 144 (197)
T ss_pred --------eeEE--ehhhHHHHH---------hC-CCc----cccchhhcCHHHHHHHHHHHHHHHhccCCCCEEEEeCC
Confidence 2211 112222222 11 211 23455689999999999999986 56799999999
Q ss_pred CCCCCHHHHHHHHHHHHHHhCCCeEEEEccCchhHhhcCEEEEEEC
Q 001438 548 TSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRNADVIAVVQG 593 (1077)
Q Consensus 548 ts~lD~~~~~~i~~~l~~~~~~~t~i~vtH~~~~~~~~d~i~~l~~ 593 (1077)
|++||+.....+.+.|+++.++.|+|+|||+++.+..||+++.+..
T Consensus 145 ~~~LD~~~~~~l~~~l~~~~~~~tiIiitH~~~~~~~~d~v~~~~~ 190 (197)
T cd03278 145 DAALDDANVERFARLLKEFSKETQFIVITHRKGTMEAADRLYGVTM 190 (197)
T ss_pred cccCCHHHHHHHHHHHHHhccCCEEEEEECCHHHHhhcceEEEEEe
Confidence 9999999999999999988778999999999999888999998864
|
Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w |
| >KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=3e-27 Score=297.73 Aligned_cols=220 Identities=25% Similarity=0.423 Sum_probs=182.9
Q ss_pred ccEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCC-CHHHHhh
Q 001438 380 GHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGL-DLKWLRQ 458 (1077)
Q Consensus 380 ~~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~-~~~~~r~ 458 (1077)
..+..+|+++.|+...+ +.+++|+.|++||+.|+.|+|||||||++++|.|..+|++|+++++|.+++.- +....++
T Consensus 563 ~~~~~~~L~k~y~~~~~--Av~~ls~~V~~gecfgLLG~NGAGKtT~f~mltG~~~~t~G~a~i~g~~i~~~~~~~~~~~ 640 (885)
T KOG0059|consen 563 SALVLNNLSKVYGGKDG--AVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGETKPTSGEALIKGHDITVSTDFQQVRK 640 (885)
T ss_pred ceEEEcceeeeecchhh--hhcceEEEecCCceEEEecCCCCCchhhHHHHhCCccCCcceEEEecCccccccchhhhhh
Confidence 46889999999986532 88999999999999999999999999999999999999999999999999754 4556899
Q ss_pred heeEEccCCCcccc-cHHHHHhcCC--CCCCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHHh
Q 001438 459 QIGLVNQEPALFAT-TIRENILYGK--DDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAI 535 (1077)
Q Consensus 459 ~i~~v~Q~~~lf~~-ti~~ni~~~~--~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal 535 (1077)
++||+||+..+++. |.||.+.+-. ......++.++++. +.+-+. |-+..++. ..++|||+|+|+++|-|+
T Consensus 641 ~iGyCPQ~d~l~~~lT~rEhL~~~arlrG~~~~di~~~v~~--ll~~~~-L~~~~~~~----~~~ySgG~kRkLs~aial 713 (885)
T KOG0059|consen 641 QLGYCPQFDALWEELTGREHLEFYARLRGLPRSDIGSAIEK--LLRLVG-LGPYANKQ----VRTYSGGNKRRLSFAIAL 713 (885)
T ss_pred hcccCCchhhhhhhccHHHHHHHHHHHcCCChhHHHHHHHH--HHHHcC-Chhhhccc----hhhCCCcchhhHHHHHHH
Confidence 99999999999876 9999997643 22222233222111 112121 22223333 458999999999999999
Q ss_pred ccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC-CCeEEEEccCchhHhh-cCEEEEEECCEEEEecChhHHhcC
Q 001438 536 VKNPSILLLDEATSALDAESENSVQEALDRVMV-GRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELISN 608 (1077)
Q Consensus 536 ~~~p~illlDEpts~lD~~~~~~i~~~l~~~~~-~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 608 (1077)
+.+|++++|||||+|+||.+++.+.+.+.+.++ ++.+|+.||.++..+. |||+.+|.+|++...|++++|-++
T Consensus 714 ig~p~vi~LDEPstGmDP~arr~lW~ii~~~~k~g~aiiLTSHsMeE~EaLCtR~aImv~G~l~ciGs~q~LKsr 788 (885)
T KOG0059|consen 714 IGDPSVILLDEPSTGLDPKARRHLWDIIARLRKNGKAIILTSHSMEEAEALCTRTAIMVIGQLRCIGSPQELKSR 788 (885)
T ss_pred hcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHHhhhhheeecCeeEEecChHHHHhh
Confidence 999999999999999999999999999999876 4599999999999987 999999999999999999999654
|
|
| >COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.94 E-value=8.5e-24 Score=225.57 Aligned_cols=328 Identities=19% Similarity=0.214 Sum_probs=236.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccccCCchhHHHHHhhcHHHHHHHHHhhHHH
Q 001438 741 TILFCCAAVITVIVHAIEHLSFGIMGERLTLRVREKMFSAILSNEIGWFDEMDNSSSILASRLESDATLLRTIVVDRSTI 820 (1077)
Q Consensus 741 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~Lr~~l~~~llr~p~~FFD~~~~~~G~IlnR~s~D~~~i~~~l~~~l~~ 820 (1077)
...|.++.....+...........+|++...++|.+..++++..|+.-|++ -++++|+.++++|+..+. .-...+..
T Consensus 51 l~~f~~llllf~~ss~is~lg~t~~gq~~I~klr~~~~~kil~tplerier--~~~~rlla~L~~Dvr~IS-f~~s~lp~ 127 (546)
T COG4615 51 LPEFLGLLLLFMVSSLISQLGLTTLGQHFIYKLRSEFIKKILDTPLERIER--LGSARLLAGLTSDVRNIS-FAFSRLPE 127 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH--hcccchhhhhccccccee-ehHhhhHH
Confidence 334555555556666677778889999999999999999999999999996 889999999999999998 44467788
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhHHHHHHHcchHHHHHhcc--h
Q 001438 821 LIQNFGLVTASFVIAFILNWRITLVVVATYPLIISGHISEKLFFQGYGGNLSKAYLKANMLAAEAVSNIRTVAAFCS--E 898 (1077)
Q Consensus 821 ~~~~~~~~~~~i~i~~~~~w~l~l~~l~~~Pl~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Etl~Gi~tIrAf~~--e 898 (1077)
+.+..+..+++++-.++++++..+++.+.+.+.++..++.+.+.-+......+...++....+-.++|-+-.+-.+. +
T Consensus 128 ~~qa~il~l~s~aYLayLSp~mf~l~vV~ivv~~~~~~~~m~rv~k~~~aare~ed~Lq~~y~~il~G~KEL~l~r~R~~ 207 (546)
T COG4615 128 LVQAIILTLGSAAYLAYLSPKMFLLTVVWIVVTIWGGFVLMARVYKHMAAARETEDKLQNDYQTILEGRKELTLNRERAE 207 (546)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcchhhheechHHHH
Confidence 89999999999999999999988888877777777766666555555555555666666777778888886655432 2
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHHh
Q 001438 899 DKVLELYSRELVEPSKRSFIRGQIAGIFYGISQFFIFSSYGLALWYGSVLMGKELASFKSVMKSFMVLIVTALAMGETLA 978 (1077)
Q Consensus 899 ~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 978 (1077)
..+-++|........+...+.........-..+.+.+...++++|....... .+......+.+.+++...|+.+...
T Consensus 208 ~~h~~~~~~~a~~~r~~~~~~n~f~~la~~~~ni~l~~lIGlvf~lal~~~w---~st~~a~tivlvlLflr~pL~s~vg 284 (546)
T COG4615 208 YVHNNLYIPDAQEYRHHIIRANTFHLLAVNWSNIMLLGLIGLVFWLALSLGW---ASTNVAATIVLVLLFLRTPLLSAVG 284 (546)
T ss_pred HHHhhhcCcchHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc---chhhHHHHHHHHHHHHhhHHHHHHh
Confidence 2222222222111111111111111122345666777778888887655422 2222344455667778889999999
Q ss_pred hhhhHHHHHHHHHHHHHHHcCCCCccCCCCcccccccccEEEeeeeeeCCCCCcccccccceeeeeCCCEEEEECCCCCC
Q 001438 979 LVPDLLKGNQMAASVFEVLDRKTQVIGDIGEELTNVEGTIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSG 1058 (1077)
Q Consensus 979 ~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~~G~I~f~nVsf~Y~~~~~~~VLk~vsl~I~~GekVaIVGrTGsG 1058 (1077)
.+|.+..+..|..++.++-..++..+-..+.+.|..+ .||++||.|+|++.. -=+.-||++|+.||.|=|+|..|||
T Consensus 285 ilP~l~~AqvA~~kiakle~~~~~a~~~~~q~~p~~~-~lelrnvrfay~~~~--FhvgPiNl~ikrGelvFliG~NGsG 361 (546)
T COG4615 285 ILPTLLTAQVAFNKIAKLELAPYKADFPRPQAFPDWK-TLELRNVRFAYQDNA--FHVGPINLTIKRGELVFLIGGNGSG 361 (546)
T ss_pred hhhHHHHHHHHHHHHHHhhcCCccccCCCCCcCCccc-ceeeeeeeeccCccc--ceecceeeEEecCcEEEEECCCCCc
Confidence 9999999999999998875433222111222222333 599999999997542 2378899999999999999999999
Q ss_pred HHHHHHHHhhccCCCCCCC
Q 001438 1059 KSTVLSLILRFYDPTAGKA 1077 (1077)
Q Consensus 1059 KSTLi~lL~Rfyd~~~G~i 1077 (1077)
|||++.+|.++|.|++|+|
T Consensus 362 KST~~~LLtGL~~PqsG~I 380 (546)
T COG4615 362 KSTLAMLLTGLYQPQSGEI 380 (546)
T ss_pred HHHHHHHHhcccCCCCCce
Confidence 9999999999999999986
|
|
| >COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.93 E-value=6.7e-27 Score=222.65 Aligned_cols=208 Identities=26% Similarity=0.437 Sum_probs=172.0
Q ss_pred EEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHHHhhhee
Q 001438 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIG 461 (1077)
Q Consensus 382 i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 461 (1077)
+.++||+..- -|-.+|.++..||.+-+|||||||||||+..++|+. |-+|+|.++|.++..++..++.++=+
T Consensus 4 ~qln~v~~~t-------RL~plS~qv~aGe~~HliGPNGaGKSTLLA~lAGm~-~~sGsi~~~G~~l~~~~~~eLArhRA 75 (248)
T COG4138 4 MQLNDVAEST-------RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGSGSIQFAGQPLEAWSATELARHRA 75 (248)
T ss_pred eeeccccccc-------cccccccccccceEEEEECCCCccHHHHHHHHhCCC-CCCceEEECCcchhHHhHhHHHHHHH
Confidence 4566666431 256789999999999999999999999999999976 56899999999999999999999999
Q ss_pred EEccCC-CcccccHHHHHhcCCCCCCH-HHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHHhcc--
Q 001438 462 LVNQEP-ALFATTIRENILYGKDDATM-EEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVK-- 537 (1077)
Q Consensus 462 ~v~Q~~-~lf~~ti~~ni~~~~~~~~~-~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~~-- 537 (1077)
|..|+. ..|...|...+.+..|+... .++...|.+. +++..++....+|||||-||+-+|-..++
T Consensus 76 YLsQqq~p~f~mpV~~YL~L~qP~~~~a~~i~~i~~~L-----------~l~DKL~Rs~~qLSGGEWQRVRLAav~LQv~ 144 (248)
T COG4138 76 YLSQQQTPPFAMPVWHYLTLHQPDKTRTELLNDVAGAL-----------ALDDKLGRSTNQLSGGEWQRVRLAAVVLQIT 144 (248)
T ss_pred HHhhccCCcchhhhhhhhhhcCchHHHHHHHHHHHhhh-----------cccchhhhhhhhcCcccceeeEEeEEEEEec
Confidence 998874 56888999999887765211 1222222221 34455666778999999999999988876
Q ss_pred ---CC--CEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCeEEEEccCch-hHhhcCEEEEEECCEEEEecChhHHhcC
Q 001438 538 ---NP--SILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLS-TIRNADVIAVVQGRKIVKTGSHEELISN 608 (1077)
Q Consensus 538 ---~p--~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~vtH~~~-~~~~~d~i~~l~~G~i~~~g~~~~l~~~ 608 (1077)
|| ++||+|||.++||...+..+...|.++. .|.++||..|+++ +++.||++..++.|++...|..+|.+..
T Consensus 145 Pd~NP~~~LLllDEP~~~LDvAQ~~aLdrll~~~c~~G~~vims~HDLNhTLrhA~~~wLL~rG~l~~~G~~~eVlt~ 222 (248)
T COG4138 145 PDANPAGQLLLLDEPMNSLDVAQQSALDRLLSALCQQGLAIVMSSHDLNHTLRHAHRAWLLKRGKLLASGRREEVLTP 222 (248)
T ss_pred CCCCccceeEEecCCCcchhHHHHHHHHHHHHHHHhCCcEEEEeccchhhHHHHHHHHHHHhcCeEEeecchhhhcCh
Confidence 33 7999999999999999998888887764 6999999999998 6899999999999999999999999864
|
|
| >cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.5e-26 Score=243.78 Aligned_cols=192 Identities=19% Similarity=0.214 Sum_probs=139.7
Q ss_pred cEEEEeEEEEcCCCCCcccccceeEEec-CCcEEEEEcCCCCcHHHHHHHHhc-ccCCCccEEEECCeeCCCCCHHHHhh
Q 001438 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIP-AGKIVALVGGSGSGKSTVISLIER-FYEPLSGEILLDGNNIKGLDLKWLRQ 458 (1077)
Q Consensus 381 ~i~~~~v~~~y~~~~~~~~l~~isl~i~-~g~~~~ivG~~GsGKSTl~~~l~g-~~~~~~G~i~~~g~~~~~~~~~~~r~ 458 (1077)
.|+++|+. +|.++ ++++|+.. +|++++|+||||||||||+++|.+ ++.+..+....+ .....+.....+.
T Consensus 5 ~i~l~nf~-~y~~~------~~i~~~~~~~~~~~~i~G~NGsGKSTll~~i~~~l~g~~~~~~~~~-~~~~~~~~~~~~~ 76 (213)
T cd03279 5 KLELKNFG-PFREE------QVIDFTGLDNNGLFLICGPTGAGKSTILDAITYALYGKTPRYGRQE-NLRSVFAPGEDTA 76 (213)
T ss_pred EEEEECCc-CcCCc------eEEeCCCCCccCEEEEECCCCCCHHHHHHHheeeEecCccccccch-hHHHHhcCCCccE
Confidence 58889987 66432 46777654 589999999999999999999995 555555555443 1112223334456
Q ss_pred heeEEccCCCcccccHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHhcCcc-chhhhhcCCCCCCChHHHHHHHHHHHhcc
Q 001438 459 QIGLVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPE-RFETQVGERGIQLSGGQKQRIAISRAIVK 537 (1077)
Q Consensus 459 ~i~~v~Q~~~lf~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~-g~~t~~~~~g~~LSgGqkqri~lARal~~ 537 (1077)
.|++++|++...-...| +. ..+.++..+... ++. ++++.+...+.+||||||||++||||++.
T Consensus 77 ~v~~~f~~~~~~~~~~r----~~--gl~~~~~~~~~~----------l~~g~l~~~l~~~~~~lS~G~~~r~~la~al~~ 140 (213)
T cd03279 77 EVSFTFQLGGKKYRVER----SR--GLDYDQFTRIVL----------LPQGEFDRFLARPVSTLSGGETFLASLSLALAL 140 (213)
T ss_pred EEEEEEEECCeEEEEEE----ec--CCCHHHHHHhhh----------hhhcchHHHhcCCccccCHHHHHHHHHHHHHHh
Confidence 79999998843222111 11 223333322211 122 24566677888999999999999999974
Q ss_pred ----------CCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC-CCeEEEEccCchhHhh-cCEEEEEECCEE
Q 001438 538 ----------NPSILLLDEATSALDAESENSVQEALDRVMV-GRTTVVVAHRLSTIRN-ADVIAVVQGRKI 596 (1077)
Q Consensus 538 ----------~p~illlDEpts~lD~~~~~~i~~~l~~~~~-~~t~i~vtH~~~~~~~-~d~i~~l~~G~i 596 (1077)
+|+++||||||++||+.+.+.+.+.++++.+ ++|+|+|||+++.+.. ||++++|++|.+
T Consensus 141 ~p~~~~~~~~~~~~lllDEp~~~lD~~~~~~~~~~l~~~~~~~~tii~itH~~~~~~~~~~~i~~~~~~~~ 211 (213)
T cd03279 141 SEVLQNRGGARLEALFIDEGFGTLDPEALEAVATALELIRTENRMVGVISHVEELKERIPQRLEVIKTPGG 211 (213)
T ss_pred HHHhhhccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECchHHHHhhCcEEEEEecCCC
Confidence 6799999999999999999999999988764 8899999999998866 899999999853
|
They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini. |
| >cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.93 E-value=8.6e-26 Score=245.65 Aligned_cols=190 Identities=24% Similarity=0.315 Sum_probs=130.8
Q ss_pred cEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHh----------------cccCCCcc-----
Q 001438 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIE----------------RFYEPLSG----- 439 (1077)
Q Consensus 381 ~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~----------------g~~~~~~G----- 439 (1077)
.|+++|. ++|.+ ..++++++ |++++|+||||||||||+++|. +++.+.+|
T Consensus 3 ~i~~~nf-ksy~~---~~~~~~~~-----~~~~~i~GpNGsGKStll~ai~~~l~~~~~~~~~~~~~~li~~~~~~~~~~ 73 (243)
T cd03272 3 QVIIQGF-KSYKD---QTVIEPFS-----PKHNVVVGRNGSGKSNFFAAIRFVLSDEYTHLREEQRQALLHEGSGPSVMS 73 (243)
T ss_pred EEEEeCc-cCccc---CcccccCC-----CCcEEEECCCCCCHHHHHHHHHHHHcCchhhhhhhhHHHhEeCCCCCCCce
Confidence 3566653 23542 34677776 8899999999999999999998 44455556
Q ss_pred ---EEEECCeeCCC-C--CHHHHhhheeEEccCCCcccc--cHHHHHhcCCCCCCHHHHHHHHHHHhHHHH--HhcCccc
Q 001438 440 ---EILLDGNNIKG-L--DLKWLRQQIGLVNQEPALFAT--TIRENILYGKDDATMEEITRAAKLSEAMSF--ISNLPER 509 (1077)
Q Consensus 440 ---~i~~~g~~~~~-~--~~~~~r~~i~~v~Q~~~lf~~--ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~--i~~l~~g 509 (1077)
+|.+++.+-.. . ....+++++++++|++.+++. |..|+..+ ++..+.... ...+++|
T Consensus 74 ~~v~i~~~~~~~~~~~~~~~~~i~r~ig~~~~~~~l~~~~~t~~ei~~~-------------l~~~gl~~~~~~~~~~qg 140 (243)
T cd03272 74 AYVEIIFDNSDNRFPIDKEEVRLRRTIGLKKDEYFLDKKNVTKNDVMNL-------------LESAGFSRSNPYYIVPQG 140 (243)
T ss_pred EEEEEEEEcCCCccCCCCCEEEEEEEEECCCCEEEECCeEcCHHHHHHH-------------HHHcCCCCCCCcEEEEcC
Confidence 56665532111 1 122456678999988877653 44433221 111110000 0000011
Q ss_pred -------hhhhhcCCCCCCChHHHHHHHHHHHhc----cCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEccC
Q 001438 510 -------FETQVGERGIQLSGGQKQRIAISRAIV----KNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHR 578 (1077)
Q Consensus 510 -------~~t~~~~~g~~LSgGqkqri~lARal~----~~p~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~vtH~ 578 (1077)
+....++++.+||||||||++||||++ .+|+++||||||++||+.+.+.+.+.|+++.+++|+|++||+
T Consensus 141 ~i~~l~~l~~~~~~~~~~lS~G~~~r~~la~~l~~~~~~~~~illlDEp~~~ld~~~~~~~~~~l~~~~~~~~ii~~~h~ 220 (243)
T cd03272 141 KINSLTNMKQDEQQEMQQLSGGQKSLVALALIFAIQKCDPAPFYLFDEIDAALDAQYRTAVANMIKELSDGAQFITTTFR 220 (243)
T ss_pred chHHhhhccccccccccccCHHHHHHHHHHHHHHHhccCCCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEecC
Confidence 112235677899999999999999996 468999999999999999999999999988778889999999
Q ss_pred chhHhhcCEEEEEE
Q 001438 579 LSTIRNADVIAVVQ 592 (1077)
Q Consensus 579 ~~~~~~~d~i~~l~ 592 (1077)
.+..+.||++++|+
T Consensus 221 ~~~~~~~d~i~~l~ 234 (243)
T cd03272 221 PELLEVADKFYGVK 234 (243)
T ss_pred HHHHhhCCEEEEEE
Confidence 88777899999985
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo |
| >COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.92 E-value=7.9e-25 Score=248.83 Aligned_cols=213 Identities=24% Similarity=0.368 Sum_probs=168.1
Q ss_pred cEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHH-HHhhh
Q 001438 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLK-WLRQQ 459 (1077)
Q Consensus 381 ~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~-~~r~~ 459 (1077)
.++++|++.. ..++|+||++++||++||.|-.|||+|-++++|.|..++.+|+|.+||+++.-.++. ..+..
T Consensus 263 ~l~v~~l~~~-------~~~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~~~~G~i~l~G~~v~~~sp~~Ai~~G 335 (500)
T COG1129 263 VLEVRNLSGG-------GKVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPASSGEILLDGKPVRIRSPRDAIKAG 335 (500)
T ss_pred EEEEecCCCC-------CceeCceeEEeCCcEEEEeccccCCHHHHHHHHhCCCcCCCceEEECCEEccCCCHHHHHHcC
Confidence 4677877642 147899999999999999999999999999999999999999999999999877654 67888
Q ss_pred eeEEccCC---Cccc-ccHHHHHhcCC-CCCC-HHHHHHHHHHHhHHHHHhcCc---cchhhhhcCCCCCCChHHHHHHH
Q 001438 460 IGLVNQEP---ALFA-TTIRENILYGK-DDAT-MEEITRAAKLSEAMSFISNLP---ERFETQVGERGIQLSGGQKQRIA 530 (1077)
Q Consensus 460 i~~v~Q~~---~lf~-~ti~~ni~~~~-~~~~-~~~~~~~~~~~~~~~~i~~l~---~g~~t~~~~~g~~LSgGqkqri~ 530 (1077)
|+|||.|- -+|. .+|++|+.+.. .... .--+....+.....+++..|. .+.+ ....+||||.+|++.
T Consensus 336 i~~v~EDRk~~Gl~l~~sI~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~~s~~----~~v~~LSGGNQQKVv 411 (500)
T COG1129 336 IAYVPEDRKSEGLVLDMSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPSPE----QPIGTLSGGNQQKVV 411 (500)
T ss_pred CEeCCcccccCcCcCCCcHHHheehHhhhhhccccccChHHHHHHHHHHHHhcCcccCCcc----chhhcCCchhhhhHH
Confidence 99999985 3564 59999998762 1100 001111222222223333332 2222 345589999999999
Q ss_pred HHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCeEEEEccCchhHh-hcCEEEEEECCEEEEecChhH
Q 001438 531 ISRAIVKNPSILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLSTIR-NADVIAVVQGRKIVKTGSHEE 604 (1077)
Q Consensus 531 lARal~~~p~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~vtH~~~~~~-~~d~i~~l~~G~i~~~g~~~~ 604 (1077)
|||.|..+|+||||||||-++|.-+..+|.+.|+++. +|+++|+||-.+..+- .||||+||.+|+|+.+=+.++
T Consensus 412 larwL~~~p~vLilDEPTRGIDVGAK~eIy~li~~lA~~G~ail~iSSElpEll~~~DRIlVm~~Gri~~e~~~~~ 487 (500)
T COG1129 412 LARWLATDPKVLILDEPTRGIDVGAKAEIYRLIRELAAEGKAILMISSELPELLGLSDRILVMREGRIVGELDREE 487 (500)
T ss_pred HHHHHhcCCCEEEECCCCcCcccchHHHHHHHHHHHHHCCCEEEEEeCChHHHHhhCCEEEEEECCEEEEEecccc
Confidence 9999999999999999999999999999999999874 6999999999999875 699999999999997554444
|
|
| >KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.4e-23 Score=255.76 Aligned_cols=208 Identities=24% Similarity=0.393 Sum_probs=171.1
Q ss_pred cccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCC---CccEEEECCeeCCCCCHHHHhhheeEEccCCCcccc-
Q 001438 397 VAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEP---LSGEILLDGNNIKGLDLKWLRQQIGLVNQEPALFAT- 472 (1077)
Q Consensus 397 ~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~---~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~- 472 (1077)
..+|+|++.-++||+.+.+.||.|||||||+++|+|..+- ..|+|..||.+.++... ++.++|++|+..-++.
T Consensus 128 ~~il~~~sg~~~pg~m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~---~~~~aY~~e~DvH~p~l 204 (1391)
T KOG0065|consen 128 IQILKDISGIIKPGEMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVP---KKTVAYNSEQDVHFPEL 204 (1391)
T ss_pred ceeecCcceeEcCCceEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCccccccc---CceEEecccccccccee
Confidence 4689999999999999999999999999999999998753 35699999999988766 6789999999988876
Q ss_pred cHHHHHhcCC----CCCCHHHH---HHHHHHHhHHHHHhcCccchhhhhcCCC-CCCChHHHHHHHHHHHhccCCCEEEE
Q 001438 473 TIRENILYGK----DDATMEEI---TRAAKLSEAMSFISNLPERFETQVGERG-IQLSGGQKQRIAISRAIVKNPSILLL 544 (1077)
Q Consensus 473 ti~~ni~~~~----~~~~~~~~---~~~~~~~~~~~~i~~l~~g~~t~~~~~g-~~LSgGqkqri~lARal~~~p~illl 544 (1077)
||||-+.|.. +..+++++ +..+...+..--+-+|.+..||.||.+. ...|||||.|+++|-+++.+|+++..
T Consensus 205 TVreTldFa~rck~~~~r~~~~~R~e~~~~~~d~~lkilGL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v~~~~~~~~ 284 (1391)
T KOG0065|consen 205 TVRETLDFAARCKGPGSRYDEVSRREKLAAMTDYLLKILGLDHCADTLVGNDMVRGVSGGERKRVSIGEMLVGPASILFW 284 (1391)
T ss_pred EEeehhhHHHhccCCccccccccHHHHHHHHHHHHHHHhCchhhccceecccccccccCcccceeeeeeeeecCcceeee
Confidence 9999998753 21112222 2222122222224568889999999754 46999999999999999999999999
Q ss_pred eCcCCCCCHHHHHHHHHHHHHHh--CCCeEEEEccCch--hHhhcCEEEEEECCEEEEecChhHHhc
Q 001438 545 DEATSALDAESENSVQEALDRVM--VGRTTVVVAHRLS--TIRNADVIAVVQGRKIVKTGSHEELIS 607 (1077)
Q Consensus 545 DEpts~lD~~~~~~i~~~l~~~~--~~~t~i~vtH~~~--~~~~~d~i~~l~~G~i~~~g~~~~l~~ 607 (1077)
||+|.|||..|.-++.++|++.. -+.|.++.=|+.+ .....|+|++|.+|+++.+|+.++.+.
T Consensus 285 De~t~GLDSsTal~iik~lr~~a~~~~~t~~vsi~Q~s~~~~~lFD~v~lL~eG~~iy~Gp~d~~~~ 351 (1391)
T KOG0065|consen 285 DEITRGLDSSTAFQIIKALRQLAHITGATALVSILQPSPEIYDLFDDVILLSEGYQIYQGPRDEVLP 351 (1391)
T ss_pred ecccccccHHHHHHHHHHHHHHHhhhcceEEEEeccCChHHHHhhhheeeeeccceEEeccHHHHHH
Confidence 99999999999999999999874 3788888888875 456799999999999999999998763
|
|
| >cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains | Back alignment and domain information |
|---|
Probab=99.92 E-value=5.8e-25 Score=230.77 Aligned_cols=164 Identities=25% Similarity=0.305 Sum_probs=128.2
Q ss_pred eeEEecCCcEEEEEcCCCCcHHHHHHHHh----cccCCCccEEEECCeeCCCCCHHHHhhheeEEccCC-----Ccccc-
Q 001438 403 FCLDIPAGKIVALVGGSGSGKSTVISLIE----RFYEPLSGEILLDGNNIKGLDLKWLRQQIGLVNQEP-----ALFAT- 472 (1077)
Q Consensus 403 isl~i~~g~~~~ivG~~GsGKSTl~~~l~----g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~-----~lf~~- 472 (1077)
.++++.+| +++|+||||||||||+.+|. |...|.+|.+..+...+.. ...+..|++++|++ .+...
T Consensus 16 ~~l~~~~g-~~~i~G~NGsGKTTLl~ai~~~l~G~~~~~~~~~~~~~~~i~~---~~~~~~v~~~f~~~~~~~~~v~r~~ 91 (204)
T cd03240 16 SEIEFFSP-LTLIVGQNGAGKTTIIEALKYALTGELPPNSKGGAHDPKLIRE---GEVRAQVKLAFENANGKKYTITRSL 91 (204)
T ss_pred eEEecCCC-eEEEECCCCCCHHHHHHHHHHHHcCCCCcccccccchHHHHhC---CCCcEEEEEEEEeCCCCEEEEEEEh
Confidence 34566677 99999999999999999994 9888888877622222221 23355799999998 33433
Q ss_pred cHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHH------HHHHHHhccCCCEEEEeC
Q 001438 473 TIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQR------IAISRAIVKNPSILLLDE 546 (1077)
Q Consensus 473 ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqr------i~lARal~~~p~illlDE 546 (1077)
|+.||+.++. .+++. + .+.+...+||+||||| ++||||++.+|++++|||
T Consensus 92 ~~~~~~~~~~----~~~~~---------~-----------~~~~~~~~LS~G~~~~~~la~rlala~al~~~p~illlDE 147 (204)
T cd03240 92 AILENVIFCH----QGESN---------W-----------PLLDMRGRCSGGEKVLASLIIRLALAETFGSNCGILALDE 147 (204)
T ss_pred hHhhceeeec----hHHHH---------H-----------HHhcCccccCccHHHHHHHHHHHHHHHHhccCCCEEEEcC
Confidence 9999997752 11111 1 1144567899999996 799999999999999999
Q ss_pred cCCCCCHHHHH-HHHHHHHHHhC--CCeEEEEccCchhHhhcCEEEEEECC
Q 001438 547 ATSALDAESEN-SVQEALDRVMV--GRTTVVVAHRLSTIRNADVIAVVQGR 594 (1077)
Q Consensus 547 pts~lD~~~~~-~i~~~l~~~~~--~~t~i~vtH~~~~~~~~d~i~~l~~G 594 (1077)
||++||+.... .+.+.|+++.+ ++|+|++||+++.+..||++++|++.
T Consensus 148 P~~~LD~~~~~~~l~~~l~~~~~~~~~~iiiitH~~~~~~~~d~i~~l~~~ 198 (204)
T cd03240 148 PTTNLDEENIEESLAEIIEERKSQKNFQLIVITHDEELVDAADHIYRVEKD 198 (204)
T ss_pred CccccCHHHHHHHHHHHHHHHHhccCCEEEEEEecHHHHhhCCEEEEEeeC
Confidence 99999999999 99999988764 78999999999988889999999653
|
The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence. |
| >PF00664 ABC_membrane: ABC transporter transmembrane region; InterPro: IPR001140 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems | Back alignment and domain information |
|---|
Probab=99.91 E-value=3e-21 Score=212.64 Aligned_cols=271 Identities=19% Similarity=0.257 Sum_probs=221.9
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHhcccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001438 60 LGSIGACVHGVSVPVFFIFFGKLINIIGLAYLFPKTASHKVAKYSLDFVYLSVAILFSSWIEVSCWMYTGERQAAKMRMA 139 (1077)
Q Consensus 60 ~~~~~~~~~~~~~p~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~ 139 (1077)
+++++.++.++..+..+++++.++|.+.... .. ...........++++.++...+.....+...+.+.++..++|.+
T Consensus 3 l~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 79 (275)
T PF00664_consen 3 LAILLSILSGLLSLLFPLLLGQIIDSLSSGN-SD--NNSSLISLAFLLIAIFLLIFLFSYIYFYLSSRISQRIRKDLRKR 79 (275)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCTTTT-SC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-cc--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555566666667778899999743221 11 11111222222222333333444444444567889999999999
Q ss_pred HHHHHHhCCchhhccCCChhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001438 140 YLRSMLNQDISLFDTEASTGEVISAITSDIIVVQDALSEKVGNFMHYISRFLGGFIIGFARVWQISLVTLSIVPLIALAG 219 (1077)
Q Consensus 140 ~~~~ll~~~~~~f~~~~~~G~i~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~l~~~pl~~~~~ 219 (1077)
+++++++.|.++|++ .++|++++|+++|++.+++.+...+..++..+..+++.+++++.++|.++++.+++.|+..++.
T Consensus 80 ~~~~~~~~~~~~~~~-~~~g~l~~~i~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~l~~l~~~~~~~~~~ 158 (275)
T PF00664_consen 80 LFEKLLRLPYSYFDK-NSSGELLSRITNDIEQIENFLSSSLFQIISSIISIIFSLILLFFISWKLALILLIILPLLFLIS 158 (275)
T ss_dssp HHHHHHHSHHHHHHH-S-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhhhhh-hcccccccccccccccccccccccccccccccchhhhhhhcccccccccccccchhhhhhHhhh
Confidence 999999999999998 4999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001438 220 GMYAYVTIGLIARVRKSYVKAGEIAEEVIGNVRTVQAFAGEDKAVKVYKEALSNTYKYGRKAGLAKGLGLGSMHCVLFLS 299 (1077)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (1077)
..+.++.++..++.++..++..+.+.|.++|+++||+|++|+.+.+++++..++..+...+.....+...+...++..+.
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (275)
T PF00664_consen 159 FIFSKKIRKLSKKYQEANSELNSFLSESLSGIRTIKAFGAEDYFLERFNKALEKYRKASFKYAKIQALLSSISQFISYLS 238 (275)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhccccccccccccccccccccccccchhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999888888888888
Q ss_pred HHHHHHHHHHH-HHhcccCHHHHHHHHHHHHHHHHH
Q 001438 300 WSLLVWYVSVV-VHKHISNGGESFTTMLNVVIAGLS 334 (1077)
Q Consensus 300 ~~~~~~~g~~~-v~~~~~~~g~~~~~~~~~~~~~~~ 334 (1077)
.++++++|+++ +..|.+++|.+++++.+......|
T Consensus 239 ~~~~~~~g~~~~~~~g~~s~g~~~~~~~~~~~~~~p 274 (275)
T PF00664_consen 239 IVLILIFGAYLSVINGQISIGTLVAFLSLSSQLINP 274 (275)
T ss_dssp HHHHHHHHHHH-HCTTSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHhh
Confidence 89999999999 999999999998877666555444
|
ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). A variety of ATP-binding transport proteins have a six transmembrane helical region. They are all integral membrane proteins involved in a variety of transport systems. Members of this family include; the cystic fibrosis transmembrane conductance regulator (CFTR), bacterial leukotoxin secretion ATP-binding protein, multidrug resistance proteins, the yeast leptomycin B resistance protein, the mammalian sulphonylurea receptor and antigen peptide transporter 2. Many of these proteins have two such regions.; GO: 0005524 ATP binding, 0042626 ATPase activity, coupled to transmembrane movement of substances, 0006810 transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 3G61_B 3G5U_B 3G60_A 3B60_D 3QF4_B 2HYD_A 2ONJ_A 4A82_B 4AA3_A 2YL4_A. |
| >cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.5e-25 Score=233.41 Aligned_cols=185 Identities=18% Similarity=0.223 Sum_probs=133.9
Q ss_pred cEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHHHh-hh
Q 001438 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLR-QQ 459 (1077)
Q Consensus 381 ~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r-~~ 459 (1077)
.|+++|.. +|.+ ..+++++++ ++++|+|||||||||++++|. +++|.+. ...| ++
T Consensus 5 ~l~l~nfk-~~~~---~~~l~~~~~-----~i~~ivGpNGaGKSTll~~i~----------~~~G~~~-----~~~~~~~ 60 (212)
T cd03274 5 KLVLENFK-SYAG---EQVIGPFHK-----SFSAIVGPNGSGKSNVIDSML----------FVFGFRA-----SKMRQKK 60 (212)
T ss_pred EEEEECcc-cCCC---CeeeccCCC-----CeEEEECCCCCCHHHHHHHHH----------HHhccCH-----HHhhhhh
Confidence 47777765 6753 358888887 899999999999999999997 2344332 1233 57
Q ss_pred eeEEccCCCcccc-cHHHHHhcCCCCCCHHHH-----HHHH-H---HHhHHHHHhcCccchhhhhcCCCCCCChHHHHHH
Q 001438 460 IGLVNQEPALFAT-TIRENILYGKDDATMEEI-----TRAA-K---LSEAMSFISNLPERFETQVGERGIQLSGGQKQRI 529 (1077)
Q Consensus 460 i~~v~Q~~~lf~~-ti~~ni~~~~~~~~~~~~-----~~~~-~---~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri 529 (1077)
+++++|+..+++. |.++++.+.......+.. .... . ..+....+..+|++.++. ...||+|||||+
T Consensus 61 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~v~~~~~~~~~~L~~~~~~~----~~~lS~G~~~r~ 136 (212)
T cd03274 61 LSDLIHNSAGHPNLDSCSVEVHFQEIIDKPLLKSKGIDLDHNRFLILQGEVEQIAQMPKKSWKN----ISNLSGGEKTLS 136 (212)
T ss_pred HHHHhcCCCCCCCCceEEEEEEEEeCCCHHHHHHCCcCCCCCceEEcCCcEEEeeccccccccc----hhhcCHHHHHHH
Confidence 9999999877665 777766543321111100 0000 0 001111233466666554 447999999999
Q ss_pred HHHHHhcc----CCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEccCchhHhhcCEEEEEEC
Q 001438 530 AISRAIVK----NPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRNADVIAVVQG 593 (1077)
Q Consensus 530 ~lARal~~----~p~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~vtH~~~~~~~~d~i~~l~~ 593 (1077)
+||||++. +|++++|||||++||+.+...+.+.++++.++.|+|++||+.+..+.||++++|..
T Consensus 137 ~la~al~~~~~~~p~ililDEPt~gLD~~~~~~l~~~l~~~~~~~~~iivs~~~~~~~~~d~v~~~~~ 204 (212)
T cd03274 137 SLALVFALHHYKPTPLYVMDEIDAALDFRNVSIVANYIKERTKNAQFIVISLRNNMFELADRLVGIYK 204 (212)
T ss_pred HHHHHHHhcccCCCCEEEEcCCCcCCCHHHHHHHHHHHHHHcCCCEEEEEECcHHHHHhCCEEEEEEe
Confidence 99999963 58999999999999999999999999998778899999999877788999999964
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo |
| >cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.3e-24 Score=236.77 Aligned_cols=177 Identities=19% Similarity=0.245 Sum_probs=130.8
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhcccCCC-ccEEEECCe-eCCCCC-H-HHHhhheeEEccCCC---------cc-cccHH
Q 001438 410 GKIVALVGGSGSGKSTVISLIERFYEPL-SGEILLDGN-NIKGLD-L-KWLRQQIGLVNQEPA---------LF-ATTIR 475 (1077)
Q Consensus 410 g~~~~ivG~~GsGKSTl~~~l~g~~~~~-~G~i~~~g~-~~~~~~-~-~~~r~~i~~v~Q~~~---------lf-~~ti~ 475 (1077)
..+++||||||||||||+++|.+++.+. .|++...|. ++-... . ...+.++++++|++. +. .-||.
T Consensus 25 ~~~~~IvG~NGsGKStll~Ai~~ll~~~~~~~~r~~~~~~li~~~~~~~~~~~~v~~~fq~~~~~~~~~~~~~~~~ltV~ 104 (251)
T cd03273 25 PQFNAITGLNGSGKSNILDAICFVLGITNLSTVRASNLQDLIYKRGQAGITKASVTIVFDNSDKSQSPIGFENYPEITVT 104 (251)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhcccccccccccCHHHHhhcCCCCCCcEEEEEEEEEcCCcccCcccccCCceEEEE
Confidence 5699999999999999999999999886 468888776 432111 1 122347999999962 22 34888
Q ss_pred HHHhcCCCC--------CCHHHHHHHHHHHhHHHHHhcCccchh---------------hhhcCCCCCCChHHHHHHHHH
Q 001438 476 ENILYGKDD--------ATMEEITRAAKLSEAMSFISNLPERFE---------------TQVGERGIQLSGGQKQRIAIS 532 (1077)
Q Consensus 476 ~ni~~~~~~--------~~~~~~~~~~~~~~~~~~i~~l~~g~~---------------t~~~~~g~~LSgGqkqri~lA 532 (1077)
+|+..+... ...+++.+.++..++. ++... ........+||||||||++||
T Consensus 105 r~I~~~~~~~~~in~~~~~~~~v~~~L~~vgL~------~~~~~~~i~Qg~v~~~~~~~~~~~~~~~~lS~G~~qr~~la 178 (251)
T cd03273 105 RQIVLGGTNKYLINGHRAQQQRVQDLFQSVQLN------VNNPHFLIMQGRITKVLNMGGVWKESLTELSGGQRSLVALS 178 (251)
T ss_pred EEEEcCCceEEEECCEEeeHHHHHHHHHHcCCC------CCCceEEEeehHHHHHHHhHHhhcccccccCHHHHHHHHHH
Confidence 887655321 1123333333322210 00111 234567789999999999999
Q ss_pred HHhc----cCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEccCchhHhhcCEEEEEE
Q 001438 533 RAIV----KNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRNADVIAVVQ 592 (1077)
Q Consensus 533 Ral~----~~p~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~vtH~~~~~~~~d~i~~l~ 592 (1077)
||++ .+|+++||||||++||+.+.+.+.+.|+++.+|.|+|+|||+.+.++.||+++-+.
T Consensus 179 ~al~~~~~~~~~illlDEPt~~ld~~~~~~~~~~l~~~~~g~~ii~iSH~~~~~~~~d~v~~~~ 242 (251)
T cd03273 179 LILALLLFKPAPMYILDEVDAALDLSHTQNIGRMIKTHFKGSQFIVVSLKEGMFNNANVLFRTR 242 (251)
T ss_pred HHHHHhhccCCCEEEEeCCCcCCCHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHhCCEEEEEE
Confidence 9997 58899999999999999999999999998877899999999988888899998764
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo |
| >KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.4e-24 Score=264.60 Aligned_cols=199 Identities=28% Similarity=0.422 Sum_probs=165.6
Q ss_pred CcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccC--CCccEEEECCeeCCCCCHHHHhhheeEEccCC-Ccccc
Q 001438 396 DVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYE--PLSGEILLDGNNIKGLDLKWLRQQIGLVNQEP-ALFAT 472 (1077)
Q Consensus 396 ~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~--~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~-~lf~~ 472 (1077)
.+.+|+||+=-++||.++|++|+||||||||+++|+|=.. ..+|+|.+||.+..+ +..++.+|||.|++ ++-.-
T Consensus 803 ~~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~G~I~Gdi~i~G~p~~q---~tF~R~~GYvqQ~DiH~~~~ 879 (1391)
T KOG0065|consen 803 TRQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTGGYIEGDILISGFPKDQ---ETFARVSGYVEQQDIHSPEL 879 (1391)
T ss_pred ceEhhhcCceEecCCceeehhcCCCCchHHHHHHHhcCcccceEEeEEEECCeeCch---hhhccccceeecccccCccc
Confidence 4578999999999999999999999999999999998543 467999999998764 67888999999987 45455
Q ss_pred cHHHHHhcCC----C-CCCHHH----HHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHHhccCC-CEE
Q 001438 473 TIRENILYGK----D-DATMEE----ITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNP-SIL 542 (1077)
Q Consensus 473 ti~~ni~~~~----~-~~~~~~----~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~~~p-~il 542 (1077)
||||-+.|.. | +.+.++ ++++.++. +|++--|..||..|..||..||+|+.||=-|+.|| .||
T Consensus 880 TVrESL~fSA~LRlp~~v~~~ek~~yVe~Vi~ll-------eL~~~~daiVG~~G~GLs~eQRKrLTIgVELvA~P~~il 952 (1391)
T KOG0065|consen 880 TVRESLRFSAALRLPKEVSDEEKYEYVEEVIELL-------ELKEYADALVGLPGSGLSTEQRKRLTIGVELVANPSSIL 952 (1391)
T ss_pred chHHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHh-------CchhhhhhhccCCCCCCCHHHhceeeEEEEEecCCceeE
Confidence 9999998863 1 222222 22222222 34555678899999999999999999999999999 899
Q ss_pred EEeCcCCCCCHHHHHHHHHHHHHHh-CCCeEEEEccCchh--HhhcCEEEEEE-CCEEEEecChhH
Q 001438 543 LLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLST--IRNADVIAVVQ-GRKIVKTGSHEE 604 (1077)
Q Consensus 543 llDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~vtH~~~~--~~~~d~i~~l~-~G~i~~~g~~~~ 604 (1077)
+|||||||||+++...|.+.++++. .|+||++.-|+++. .+..|+++.|+ +|+.+..|+..+
T Consensus 953 FLDEPTSGLDsqaA~~i~~~lrkla~tGqtIlCTIHQPS~~ife~FD~LLLLkrGGqtVY~G~lG~ 1018 (1391)
T KOG0065|consen 953 FLDEPTSGLDSQAAAIVMRFLRKLADTGQTILCTIHQPSIDIFEAFDELLLLKRGGQTVYFGPLGE 1018 (1391)
T ss_pred EecCCCCCccHHHHHHHHHHHHHHHhcCCeEEEEecCCcHHHHHHHhHHHHHhcCCeEEEecCccc
Confidence 9999999999999999999999974 79999999999984 47899999996 568999998655
|
|
| >KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.8e-24 Score=240.34 Aligned_cols=194 Identities=30% Similarity=0.394 Sum_probs=154.0
Q ss_pred ccEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHHHhhh
Q 001438 380 GHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQ 459 (1077)
Q Consensus 380 ~~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~ 459 (1077)
..|.++||+|.|++++ .++++++|-|..++.+++|||||+|||||++++.|.+.|..|.|.-.-.. +
T Consensus 388 pvi~~~nv~F~y~~~~--~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p~~G~vs~~~H~-----------~ 454 (614)
T KOG0927|consen 388 PVIMVQNVSFGYSDNP--MIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQPTIGMVSRHSHN-----------K 454 (614)
T ss_pred CeEEEeccccCCCCcc--hhhhhhhcccCcccceeEecCCCCchhhhHHHHhhccccccccccccccc-----------c
Confidence 4689999999998654 68999999999999999999999999999999999999999998654321 3
Q ss_pred eeEEccCC---CcccccHHHHHhcCCCC-CCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHHh
Q 001438 460 IGLVNQEP---ALFATTIRENILYGKDD-ATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAI 535 (1077)
Q Consensus 460 i~~v~Q~~---~lf~~ti~~ni~~~~~~-~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal 535 (1077)
+++-.|.- ..++.+.-|++.--.++ .+.+++.......++....+ +. .-.+||+|||.||+.||.+
T Consensus 455 ~~~y~Qh~~e~ldl~~s~le~~~~~~~~~~~~e~~r~ilgrfgLtgd~q------~~----p~~~LS~Gqr~rVlFa~l~ 524 (614)
T KOG0927|consen 455 LPRYNQHLAEQLDLDKSSLEFMMPKFPDEKELEEMRSILGRFGLTGDAQ------VV----PMSQLSDGQRRRVLFARLA 524 (614)
T ss_pred chhhhhhhHhhcCcchhHHHHHHHhccccchHHHHHHHHHHhCCCcccc------cc----chhhcccccchhHHHHHHH
Confidence 55555543 23566778887633333 34444444444443321111 11 2358999999999999999
Q ss_pred ccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEccCchhHhh-cCEEEEEECCEEEE
Q 001438 536 VKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVK 598 (1077)
Q Consensus 536 ~~~p~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~ 598 (1077)
++.|.||+|||||++||.++...+.++|.++ .-++|+|||+.-.+.+ |++|.+.+||.+..
T Consensus 525 ~kqP~lLlLDEPtnhLDi~tid~laeaiNe~--~Ggvv~vSHDfrlI~qVaeEi~~c~~~~~~~ 586 (614)
T KOG0927|consen 525 VKQPHLLLLDEPTNHLDIETIDALAEAINEF--PGGVVLVSHDFRLISQVAEEIWVCENGTVTK 586 (614)
T ss_pred hcCCcEEEecCCCcCCCchhHHHHHHHHhcc--CCceeeeechhhHHHHHHHHhHhhccCceee
Confidence 9999999999999999999999999999876 3479999999999977 99999999998764
|
|
| >PRK00635 excinuclease ABC subunit A; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=4e-23 Score=265.76 Aligned_cols=212 Identities=23% Similarity=0.369 Sum_probs=152.7
Q ss_pred cEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHH---------HHhcccCCCc----c----EEEE
Q 001438 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVIS---------LIERFYEPLS----G----EILL 443 (1077)
Q Consensus 381 ~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~---------~l~g~~~~~~----G----~i~~ 443 (1077)
.++++|++. ..|+|+||+|++||+++|.|+||||||||++ .|.|...+.. + -|.|
T Consensus 600 ~L~l~~~~~--------~~Lk~isl~Ip~Geiv~VtG~nGSGKSTLl~~~L~~~l~~~l~~~~~~~~~i~g~~i~~vi~i 671 (1809)
T PRK00635 600 TLTLSKATK--------HNLKDLTISLPLGRLTVVTGVSGSGKSSLINDTLVPAVEEFIEQGFCSNLSIQWGAISRLVHI 671 (1809)
T ss_pred eEEEecccc--------CCccceEEEEcCCcEEEEEcCCCCCHHHHHHHHHHHHHHHHhcCCCcccccccccccceeEEe
Confidence 578888752 2589999999999999999999999999999 5555432211 1 2345
Q ss_pred CCeeCCCCC----H------HHHh---------hhe-----eEEccC------------------C--------------
Q 001438 444 DGNNIKGLD----L------KWLR---------QQI-----GLVNQE------------------P-------------- 467 (1077)
Q Consensus 444 ~g~~~~~~~----~------~~~r---------~~i-----~~v~Q~------------------~-------------- 467 (1077)
|-.++.... . +++| ++. .+.+|. |
T Consensus 672 dQspigr~~rS~~atY~g~fd~IR~lFA~~~~ak~~g~~~~~fsfn~~gG~C~~c~g~g~i~v~m~~~~v~c~~C~GkRy 751 (1809)
T PRK00635 672 TRDLPGRSQRSIPLTYIKAFDDLRELFAEQPRSKRLGLTKSHFSFNTPLGACAECQGLGSITTTDNRTSIPCPSCLGKRF 751 (1809)
T ss_pred cCCCCCCCCCCCceeehhhhHHHHHHHhhChHHHHcCCCcceeeecCCCCCCCcceeeEEEEEecCCceEECCccCCccc
Confidence 544443211 1 1333 111 122331 1
Q ss_pred ------Ccccc-cHHHHHhcCCCCC-----CHHHHHHHHHHHhHHHHHhcCccchhhh-hcCCCCCCChHHHHHHHHHHH
Q 001438 468 ------ALFAT-TIRENILYGKDDA-----TMEEITRAAKLSEAMSFISNLPERFETQ-VGERGIQLSGGQKQRIAISRA 534 (1077)
Q Consensus 468 ------~lf~~-ti~~ni~~~~~~~-----~~~~~~~~~~~~~~~~~i~~l~~g~~t~-~~~~g~~LSgGqkqri~lARa 534 (1077)
..+.+ ||.||+.++..+. ..+++.+.++ . ++.+ |++.. .++...+||||||||++||||
T Consensus 752 ~~e~L~~~~~~~tI~evL~mtv~ea~~~f~~~~~i~~~l~---~---L~~v--GL~~l~l~q~~~tLSGGE~QRV~LAra 823 (1809)
T PRK00635 752 LPQVLEVRYKGKNIADILEMTAYEAEKFFLDEPSIHEKIH---A---LCSL--GLDYLPLGRPLSSLSGGEIQRLKLAYE 823 (1809)
T ss_pred CHHHHhhccCCCCHHHHHHcCHHHHHHcccChHHHHHHHH---H---HHHc--CCcchhhcCccccCCHHHHHHHHHHHH
Confidence 13344 8899998864311 1222222221 2 2222 45443 577888999999999999999
Q ss_pred hc---cCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCeEEEEccCchhHhhcCEEEEEE------CCEEEEecChhH
Q 001438 535 IV---KNPSILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLSTIRNADVIAVVQ------GRKIVKTGSHEE 604 (1077)
Q Consensus 535 l~---~~p~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~vtH~~~~~~~~d~i~~l~------~G~i~~~g~~~~ 604 (1077)
|+ .+|++|||||||++||+.+.+.+.+.|+++. +|.|+|+|||+++.++.||+|++|. +|++++.|++++
T Consensus 824 L~~~~~~P~LLILDEPTsGLD~~~~~~Ll~lL~~L~~~G~TVIiIsHdl~~i~~aDrVi~L~p~gg~~~G~iv~~Gtpee 903 (1809)
T PRK00635 824 LLAPSKKPTLYVLDEPTTGLHTHDIKALIYVLQSLTHQGHTVVIIEHNMHVVKVADYVLELGPEGGNLGGYLLASCSPEE 903 (1809)
T ss_pred HhhcCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEEccCCCCCCCEEEEeCCHHH
Confidence 98 6999999999999999999999999998875 5899999999999998899999996 899999999999
Q ss_pred HhcC
Q 001438 605 LISN 608 (1077)
Q Consensus 605 l~~~ 608 (1077)
+...
T Consensus 904 l~~~ 907 (1809)
T PRK00635 904 LIHL 907 (1809)
T ss_pred HHhc
Confidence 9763
|
|
| >COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.2e-22 Score=225.57 Aligned_cols=215 Identities=25% Similarity=0.453 Sum_probs=174.3
Q ss_pred cccEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeC-CCCCHHHHh
Q 001438 379 SGHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNI-KGLDLKWLR 457 (1077)
Q Consensus 379 ~~~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~-~~~~~~~~r 457 (1077)
+..++++|++..-+. +...+++|||+|++||++||.|-.|-|-+-|+.+|+|+.+|.+|+|.++|+|+ ...+...+|
T Consensus 255 ~~vL~V~~L~v~~~~--~~~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~~~~G~I~l~G~~v~~~~~~~~~r 332 (501)
T COG3845 255 EVVLEVEDLSVKDRR--GVTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPASGRILLNGKDVLGRLSPRERR 332 (501)
T ss_pred CeEEEEeeeEeecCC--CCceeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCCccCCceEEECCEeccccCCHHHHH
Confidence 346899999986432 24578999999999999999999999999999999999999999999999997 666777766
Q ss_pred h-heeEEccCCC----cccccHHHHHhcCCCC---------CCHHHHHHHHHHHhHHHHHhcC---ccchhhhhcCCCCC
Q 001438 458 Q-QIGLVNQEPA----LFATTIRENILYGKDD---------ATMEEITRAAKLSEAMSFISNL---PERFETQVGERGIQ 520 (1077)
Q Consensus 458 ~-~i~~v~Q~~~----lf~~ti~~ni~~~~~~---------~~~~~~~~~~~~~~~~~~i~~l---~~g~~t~~~~~g~~ 520 (1077)
+ .+||||.|.. ....|+.||+.++... .+..++.+.++ +.++++ +.+.++ ...+
T Consensus 333 ~~G~~~VPedR~~~Glv~~~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~a~-----~li~~fdVr~~~~~~----~a~~ 403 (501)
T COG3845 333 RLGLAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFAR-----ELIEEFDVRAPSPDA----PARS 403 (501)
T ss_pred hcCCccCChhhccCccccCccHHHHhhhhhccccccccccccCHHHHHHHHH-----HHHHHcCccCCCCCc----chhh
Confidence 5 5999999974 3566999999876522 12233332221 112222 233333 3458
Q ss_pred CChHHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCeEEEEccCchhHhh-cCEEEEEECCEEEE
Q 001438 521 LSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVK 598 (1077)
Q Consensus 521 LSgGqkqri~lARal~~~p~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~ 598 (1077)
||||++||+-+||-+.++|++||..+||-+||....+.|.+.|.+.+ .|+.+++|+-+++.+.. ||||.||.+|+++.
T Consensus 404 LSGGNqQK~IlaREl~~~p~lLI~~qPTrGLDvgA~~~I~~~l~e~r~~G~AVLLiS~dLDEil~lsDrIaVi~~Gri~~ 483 (501)
T COG3845 404 LSGGNQQKLILARELARRPDLLIAAQPTRGLDVGAIEFIHERLLELRDAGKAVLLISEDLDEILELSDRIAVIYEGRIVG 483 (501)
T ss_pred cCCcceehhhhhhhhccCCCEEEEcCCCccccHHHHHHHHHHHHHHHhcCCEEEEEehhHHHHHHhhheeeeeeCCceec
Confidence 99999999999999999999999999999999999999988887764 69999999999998755 99999999999998
Q ss_pred ecChhH
Q 001438 599 TGSHEE 604 (1077)
Q Consensus 599 ~g~~~~ 604 (1077)
..++++
T Consensus 484 ~~~~~~ 489 (501)
T COG3845 484 IVPPEE 489 (501)
T ss_pred cccccc
Confidence 877665
|
|
| >PRK00349 uvrA excinuclease ABC subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=99.90 E-value=5.2e-23 Score=255.30 Aligned_cols=98 Identities=35% Similarity=0.572 Sum_probs=91.1
Q ss_pred hhcCCCCCCChHHHHHHHHHHHhccCC---CEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCeEEEEccCchhHhhcCEE
Q 001438 513 QVGERGIQLSGGQKQRIAISRAIVKNP---SILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLSTIRNADVI 588 (1077)
Q Consensus 513 ~~~~~g~~LSgGqkqri~lARal~~~p---~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~vtH~~~~~~~~d~i 588 (1077)
.+++...+||||||||++|||+|+++| +++||||||++||+...+.+.+.|+++. +|.|+|+|||+++.+..||+|
T Consensus 823 ~l~~~~~tLSgGEkQRl~LAraL~~~p~~~~llILDEPtsGLD~~~~~~L~~~L~~l~~~G~TVIiitH~~~~i~~aD~i 902 (943)
T PRK00349 823 KLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFEDIRKLLEVLHRLVDKGNTVVVIEHNLDVIKTADWI 902 (943)
T ss_pred cccCCcccCCHHHHHHHHHHHHHhcCCCCCeEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhCCEE
Confidence 357788899999999999999999999 9999999999999999999999998875 589999999999999899999
Q ss_pred EEE------ECCEEEEecChhHHhcCCC
Q 001438 589 AVV------QGRKIVKTGSHEELISNPN 610 (1077)
Q Consensus 589 ~~l------~~G~i~~~g~~~~l~~~~~ 610 (1077)
++| ++|+|++.|+++++.+++.
T Consensus 903 i~Lgp~~G~~~G~Iv~~Gt~~el~~~~~ 930 (943)
T PRK00349 903 IDLGPEGGDGGGEIVATGTPEEVAKVEA 930 (943)
T ss_pred EEecCCcCCCCCEEEEeCCHHHHHhCcc
Confidence 999 7999999999999987644
|
|
| >PF00664 ABC_membrane: ABC transporter transmembrane region; InterPro: IPR001140 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.5e-20 Score=207.09 Aligned_cols=271 Identities=21% Similarity=0.309 Sum_probs=225.2
Q ss_pred HHHHHHHHHhhHHhHHHHHHHHHHHhhccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001438 700 CGTICAIIAGAQMPLFALGVSQALVAYYMDWDTTQREVKKITILFCCAAVITVIVHAIEHLSFGIMGERLTLRVREKMFS 779 (1077)
Q Consensus 700 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~Lr~~l~~ 779 (1077)
.+.++.++.++..+..++.++..++...............+...++++.++.........+...+.+.+...++|+++++
T Consensus 3 l~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 82 (275)
T PF00664_consen 3 LAILLSILSGLLSLLFPLLLGQIIDSLSSGNSDNNSSLISLAFLLIAIFLLIFLFSYIYFYLSSRISQRIRKDLRKRLFE 82 (275)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCTTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666667777778888888776332211111111122222223333444444455555678999999999999999
Q ss_pred HHHcCCccccccccCCchhHHHHHhhcHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 001438 780 AILSNEIGWFDEMDNSSSILASRLESDATLLRTIVVDRSTILIQNFGLVTASFVIAFILNWRITLVVVATYPLIISGHIS 859 (1077)
Q Consensus 780 ~llr~p~~FFD~~~~~~G~IlnR~s~D~~~i~~~l~~~l~~~~~~~~~~~~~i~i~~~~~w~l~l~~l~~~Pl~i~~~~~ 859 (1077)
++++.|.+||++ +++|+++||+++|++.+++.+...+..++..+..+++.++++++.+|+++++++++.|+..+....
T Consensus 83 ~~~~~~~~~~~~--~~~g~l~~~i~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~l~~l~~~~~~~~~~~~ 160 (275)
T PF00664_consen 83 KLLRLPYSYFDK--NSSGELLSRITNDIEQIENFLSSSLFQIISSIISIIFSLILLFFISWKLALILLIILPLLFLISFI 160 (275)
T ss_dssp HHHHSHHHHHHH--S-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhhhhhh--hcccccccccccccccccccccccccccccccchhhhhhhcccccccccccccchhhhhhHhhhhh
Confidence 999999999995 999999999999999999999999999999999999999999999999999999999999988888
Q ss_pred HHHHHHhhhhhHHHHHHHHhHHHHHHHcchHHHHHhcchHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001438 860 EKLFFQGYGGNLSKAYLKANMLAAEAVSNIRTVAAFCSEDKVLELYSRELVEPSKRSFIRGQIAGIFYGISQFFIFSSYG 939 (1077)
Q Consensus 860 ~~~~~~~~~~~~~~~~~~~~~~~~Etl~Gi~tIrAf~~e~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 939 (1077)
..+..++..++.++..++..+.+.|.++|+++||+|+.|+++.++|.+..++..+...+.....++..+..+.+......
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (275)
T PF00664_consen 161 FSKKIRKLSKKYQEANSELNSFLSESLSGIRTIKAFGAEDYFLERFNKALEKYRKASFKYAKIQALLSSISQFISYLSIV 240 (275)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccccccccccccccccccccccccchhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHH-hhcCCCCHHHHHHHHHHHHHHHHH
Q 001438 940 LALWYGSVL-MGKELASFKSVMKSFMVLIVTALA 972 (1077)
Q Consensus 940 ~~~~~g~~l-~~~~~~~~~~~~~~~~~~~~~~~~ 972 (1077)
+++++|+.+ +..|.+++++++.++.+......|
T Consensus 241 ~~~~~g~~~~~~~g~~s~g~~~~~~~~~~~~~~p 274 (275)
T PF00664_consen 241 LILIFGAYLSVINGQISIGTLVAFLSLSSQLINP 274 (275)
T ss_dssp HHHHHHHHH-HCTTSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHhh
Confidence 999999999 999999999999887777665554
|
ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). A variety of ATP-binding transport proteins have a six transmembrane helical region. They are all integral membrane proteins involved in a variety of transport systems. Members of this family include; the cystic fibrosis transmembrane conductance regulator (CFTR), bacterial leukotoxin secretion ATP-binding protein, multidrug resistance proteins, the yeast leptomycin B resistance protein, the mammalian sulphonylurea receptor and antigen peptide transporter 2. Many of these proteins have two such regions.; GO: 0005524 ATP binding, 0042626 ATPase activity, coupled to transmembrane movement of substances, 0006810 transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 3G61_B 3G5U_B 3G60_A 3B60_D 3QF4_B 2HYD_A 2ONJ_A 4A82_B 4AA3_A 2YL4_A. |
| >TIGR00630 uvra excinuclease ABC, A subunit | Back alignment and domain information |
|---|
Probab=99.88 E-value=9e-22 Score=243.88 Aligned_cols=93 Identities=35% Similarity=0.614 Sum_probs=86.6
Q ss_pred hhcCCCCCCChHHHHHHHHHHHhcc---CCCEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCeEEEEccCchhHhhcCEE
Q 001438 513 QVGERGIQLSGGQKQRIAISRAIVK---NPSILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLSTIRNADVI 588 (1077)
Q Consensus 513 ~~~~~g~~LSgGqkqri~lARal~~---~p~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~vtH~~~~~~~~d~i 588 (1077)
.+++...+||||||||++|||+|++ +|+++||||||++||+...+.+.+.|+++. +|.|+|+|+|+++.++.||+|
T Consensus 821 ~l~~~~~tLSgGe~QRl~LA~aL~~~~~~p~llILDEPtsgLD~~~~~~L~~~L~~l~~~G~TVIvi~H~~~~i~~aD~i 900 (924)
T TIGR00630 821 KLGQPATTLSGGEAQRIKLAKELSKRSTGRTLYILDEPTTGLHFDDIKKLLEVLQRLVDQGNTVVVIEHNLDVIKTADYI 900 (924)
T ss_pred hhcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhCCEE
Confidence 3577889999999999999999997 599999999999999999999999998875 589999999999999889999
Q ss_pred EEE------ECCEEEEecChhHH
Q 001438 589 AVV------QGRKIVKTGSHEEL 605 (1077)
Q Consensus 589 ~~l------~~G~i~~~g~~~~l 605 (1077)
++| ++|+|++.|+++++
T Consensus 901 i~Lgp~~G~~gG~iv~~G~~~~l 923 (924)
T TIGR00630 901 IDLGPEGGDGGGTIVASGTPEEV 923 (924)
T ss_pred EEecCCccCCCCEEEEeCCHHHh
Confidence 999 79999999999886
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.3e-22 Score=220.22 Aligned_cols=183 Identities=17% Similarity=0.178 Sum_probs=123.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCee-C-C-----CCCHHHHhhheeEEccCCC--cccccHHHHHh-c
Q 001438 411 KIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNN-I-K-----GLDLKWLRQQIGLVNQEPA--LFATTIRENIL-Y 480 (1077)
Q Consensus 411 ~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~-~-~-----~~~~~~~r~~i~~v~Q~~~--lf~~ti~~ni~-~ 480 (1077)
.+++|+||||||||||+.+|.+...+..|++..++.+ + . ..+.....-.+.|..|++. ++..++++.-. +
T Consensus 23 ~~~~i~G~NGsGKStll~ai~~~l~~~~~~~r~~~~~~~i~~~~~~~~~~~~~~v~~~f~~~~~~~~~~~~~~~~~~~~~ 102 (247)
T cd03275 23 RFTCIIGPNGSGKSNLMDAISFVLGEKSSHLRSKNLKDLIYRARVGKPDSNSAYVTAVYEDDDGEEKTFRRIITGGSSSY 102 (247)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCcccccccchhhhcccCccccCCCceEEEEEEEEcCCCcEEEEEEEEECCceEE
Confidence 3999999999999999999999998877877654421 1 1 0111122334556556543 33444443321 1
Q ss_pred C--CCCCCHHHHHHHHHHHhHHHHHhc--Cccchhhhhc---------CCCCCCChHHHHHHHHHHHhccC----CCEEE
Q 001438 481 G--KDDATMEEITRAAKLSEAMSFISN--LPERFETQVG---------ERGIQLSGGQKQRIAISRAIVKN----PSILL 543 (1077)
Q Consensus 481 ~--~~~~~~~~~~~~~~~~~~~~~i~~--l~~g~~t~~~---------~~g~~LSgGqkqri~lARal~~~----p~ill 543 (1077)
. ....+.+++.+.++..+...+... +++|.-+.+. ....+||||||||++||||++.+ |+++|
T Consensus 103 ~ingk~~s~~~~~~~l~~~gi~~~~~~~~i~Qg~v~~i~~~~p~~~~~~~~~~LS~G~k~rl~la~al~~~~~~~p~~ll 182 (247)
T cd03275 103 RINGKVVSLKEYNEELEKINILVKARNFLVFQGDVESIASKNPPGKRFRDMDNLSGGEKTMAALALLFAIHSYQPAPFFV 182 (247)
T ss_pred EECCEEecHHHHHHHHHHhCCCCCCCeEEEECCchhhhhhccCcchhhhhHHHcCHHHHHHHHHHHHHHHhccCCCCEEE
Confidence 1 122344555555444443211000 1223222222 22378999999999999999864 89999
Q ss_pred EeCcCCCCCHHHHHHHHHHHHHHhC-CCeEEEEccCchhHhhcCEEEEEEC
Q 001438 544 LDEATSALDAESENSVQEALDRVMV-GRTTVVVAHRLSTIRNADVIAVVQG 593 (1077)
Q Consensus 544 lDEpts~lD~~~~~~i~~~l~~~~~-~~t~i~vtH~~~~~~~~d~i~~l~~ 593 (1077)
|||||++||+.....+.+.|+++.+ |.|+|+|||+.+.++.||++++|..
T Consensus 183 lDEPt~~LD~~~~~~l~~~i~~~~~~g~~vi~isH~~~~~~~~d~i~~~~~ 233 (247)
T cd03275 183 LDEVDAALDNTNVGKVASYIREQAGPNFQFIVISLKEEFFSKADALVGVYR 233 (247)
T ss_pred EecccccCCHHHHHHHHHHHHHhccCCcEEEEEECCHHHHhhCCeEEEEEe
Confidence 9999999999999999999998754 8899999999988888999999864
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for |
| >COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.87 E-value=4.7e-22 Score=194.81 Aligned_cols=233 Identities=21% Similarity=0.357 Sum_probs=171.2
Q ss_pred EEEeEEEEcCC-CCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCC----CccEEEECCeeCCCCCHHHHh
Q 001438 383 EFKDVSFCYPS-RPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEP----LSGEILLDGNNIKGLDLKWLR 457 (1077)
Q Consensus 383 ~~~~v~~~y~~-~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~----~~G~i~~~g~~~~~~~~~~~r 457 (1077)
.++|++..+.. .....+.+++|+++..||+-|+||+||||||-+.++|+|..+- +.-+..+++.|+-++++++.|
T Consensus 5 DIrnL~IE~~TsqG~vK~VD~v~ltlnEGEi~GLVGESGSGKSLiAK~Ic~v~kdnW~vTADR~Rf~~idLL~L~Pr~RR 84 (330)
T COG4170 5 DIRNLTIEFKTSQGWVKAVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICGVNKDNWRVTADRMRFDDIDLLRLSPRERR 84 (330)
T ss_pred cccceEEEEecCCCceEeeeeeeeeeccceeeeeeccCCCchhHHHHHHhcccccceEEEhhhcccccchhhcCChHHhh
Confidence 34455444422 1234578999999999999999999999999999999998753 455667888888888888877
Q ss_pred h----heeEEccCCCcc---cccH----HHHHhcCC-CCCCHHH-HHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChH
Q 001438 458 Q----QIGLVNQEPALF---ATTI----RENILYGK-DDATMEE-ITRAAKLSEAMSFISNLPERFETQVGERGIQLSGG 524 (1077)
Q Consensus 458 ~----~i~~v~Q~~~lf---~~ti----~~ni~~~~-~~~~~~~-~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgG 524 (1077)
+ .|+.++|+|.-. +.+| -+||-+-. .....+. -++.-+..+++..+. ..+. .......+..|-.|
T Consensus 85 k~ig~~isMIFQeP~sCLDPS~~iG~QlIq~IP~wTfkgrWWq~F~WrKrrAIeLLHrVG-IKdH-kDIM~SYP~ElTeG 162 (330)
T COG4170 85 KLVGHNVSMIFQEPQSCLDPSERVGRQLIQNIPAWTYKGRWWQRFGWRKRRAIELLHRVG-IKDH-KDIMRSYPYELTEG 162 (330)
T ss_pred hhhccchhhhhcCchhhcChHHHHHHHHHhhCccccccchHhhhhchhHHHHHHHHHHhc-cccH-HHHHHhCcchhccC
Confidence 5 478999999643 2244 34442110 0000110 111111111111111 1110 11234556679999
Q ss_pred HHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh--CCCeEEEEccCchhHhh-cCEEEEEECCEEEEecC
Q 001438 525 QKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVM--VGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGS 601 (1077)
Q Consensus 525 qkqri~lARal~~~p~illlDEpts~lD~~~~~~i~~~l~~~~--~~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~g~ 601 (1077)
+-|++.||-|+..+|++||-||||+++|+.+..+|...|.++. .+.|+++++|++..+.. ||+|-||.-|+-+|.+.
T Consensus 163 E~QKVMIA~A~AnqPrLLIADEPTN~~e~~Tq~QifRLLs~mNQn~~TtILL~s~Dl~~is~W~d~i~VlYCGQ~~ESa~ 242 (330)
T COG4170 163 ECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLSRLNQNSNTTILLISHDLQMISQWADKINVLYCGQTVESAP 242 (330)
T ss_pred cceeeeeehhhccCCceEeccCCCcccCccHHHHHHHHHHHhhccCCceEEEEcccHHHHHHHhhheEEEEecccccccc
Confidence 9999999999999999999999999999999999999998764 57899999999999976 99999999999999999
Q ss_pred hhHHhcCCCchHHHHH
Q 001438 602 HEELISNPNSAYAALV 617 (1077)
Q Consensus 602 ~~~l~~~~~~~~~~~~ 617 (1077)
.+++++.++..|.+..
T Consensus 243 ~e~l~~~PhHPYTqAL 258 (330)
T COG4170 243 SEELVTMPHHPYTQAL 258 (330)
T ss_pred hhHHhcCCCCchHHHH
Confidence 9999999999987644
|
|
| >KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.9e-21 Score=215.35 Aligned_cols=195 Identities=25% Similarity=0.303 Sum_probs=160.2
Q ss_pred cccEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHHHhh
Q 001438 379 SGHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQ 458 (1077)
Q Consensus 379 ~~~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~ 458 (1077)
+..+++.+|+|.|+..+ .+.+.+++++++.-+.+++||++|+||||+++++.+...|.+|.+.+.+ |.
T Consensus 360 ~p~l~i~~V~f~y~p~~-y~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~~~rgi~~~~~-----------r~ 427 (582)
T KOG0062|consen 360 PPNLRISYVAFEYTPSE-YQWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLTPTRGIVGRHP-----------RL 427 (582)
T ss_pred CCeeEEEeeeccCCCcc-hhhhhccCCccchhhhhheeccCchhHHHHHHHHhccCCcccceeeecc-----------cc
Confidence 34699999999997543 2789999999999999999999999999999999999999999998877 56
Q ss_pred heeEEccCCCc-ccc--cHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHhcCccchhhhhcCC-CCCCChHHHHHHHHHHH
Q 001438 459 QIGLVNQEPAL-FAT--TIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGER-GIQLSGGQKQRIAISRA 534 (1077)
Q Consensus 459 ~i~~v~Q~~~l-f~~--ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~-g~~LSgGqkqri~lARa 534 (1077)
+|+|-.|.-.= ++- +.-|-..-..|....+++.+.|...++ +..+.-. ...||||||-|+++|-.
T Consensus 428 ri~~f~Qhhvd~l~~~v~~vd~~~~~~pG~~~ee~r~hl~~~Gl-----------~g~la~~si~~LSGGQKsrvafA~~ 496 (582)
T KOG0062|consen 428 RIKYFAQHHVDFLDKNVNAVDFMEKSFPGKTEEEIRRHLGSFGL-----------SGELALQSIASLSGGQKSRVAFAAC 496 (582)
T ss_pred eecchhHhhhhHHHHHhHHHHHHHHhCCCCCHHHHHHHHHhcCC-----------CchhhhccccccCCcchhHHHHHHH
Confidence 79999997532 232 223333222355578888887766543 3223222 35799999999999999
Q ss_pred hccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEccCchhHhh-cCEEEEEECCEEEE
Q 001438 535 IVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVK 598 (1077)
Q Consensus 535 l~~~p~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~ 598 (1077)
...+|.+|+|||||+.||.++-..+-++|+.... .||+|||+.++++. |+.+.+.++|++..
T Consensus 497 ~~~~PhlLVLDEPTNhLD~dsl~AL~~Al~~F~G--GVv~VSHd~~fi~~~c~E~Wvve~g~vt~ 559 (582)
T KOG0062|consen 497 TWNNPHLLVLDEPTNHLDRDSLGALAKALKNFNG--GVVLVSHDEEFISSLCKELWVVEDGKVTP 559 (582)
T ss_pred hcCCCcEEEecCCCccccHHHHHHHHHHHHhcCC--cEEEEECcHHHHhhcCceeEEEcCCcEEe
Confidence 9999999999999999999999999999987643 59999999999987 99999999999975
|
|
| >KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.87 E-value=1e-21 Score=210.86 Aligned_cols=191 Identities=29% Similarity=0.419 Sum_probs=147.5
Q ss_pred ccEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHHHhhh
Q 001438 380 GHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQ 459 (1077)
Q Consensus 380 ~~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~ 459 (1077)
..+-++||+|.|++. .+.+++++|-|.--..+|||||||.|||||+++|.|.++|+.|+..-+- |-+
T Consensus 585 PvLGlH~VtFgy~gq--kpLFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~P~~GE~RKnh-----------rL~ 651 (807)
T KOG0066|consen 585 PVLGLHDVTFGYPGQ--KPLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLDPNDGELRKNH-----------RLR 651 (807)
T ss_pred CeeecccccccCCCC--CchhhcccccccccceeEEECCCCccHHHHHHHHhcCCCCCcchhhccc-----------eee
Confidence 457889999999865 4789999999999999999999999999999999999999999875432 336
Q ss_pred eeEEccCCC-ccc--ccHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHHhc
Q 001438 460 IGLVNQEPA-LFA--TTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIV 536 (1077)
Q Consensus 460 i~~v~Q~~~-lf~--~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~ 536 (1077)
||+-.|... -.+ .|-.|.+.-+. +..+++...++...++. ...+|. ....||||||.|+++|---+
T Consensus 652 iG~FdQh~~E~L~~Eetp~EyLqr~F-Nlpyq~ARK~LG~fGL~-------sHAHTi---kikdLSGGQKaRValaeLal 720 (807)
T KOG0066|consen 652 IGWFDQHANEALNGEETPVEYLQRKF-NLPYQEARKQLGTFGLA-------SHAHTI---KIKDLSGGQKARVALAELAL 720 (807)
T ss_pred eechhhhhHHhhccccCHHHHHHHhc-CCChHHHHHHhhhhhhh-------hccceE---eeeecCCcchHHHHHHHHhc
Confidence 999888753 222 37777775433 23455555544433321 112222 34579999999999999999
Q ss_pred cCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEccCchhHhhcC-EEEEEECCEE
Q 001438 537 KNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRNAD-VIAVVQGRKI 596 (1077)
Q Consensus 537 ~~p~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~vtH~~~~~~~~d-~i~~l~~G~i 596 (1077)
+.||||||||||.+||.++-..+-++|.+.. -.||+|||+-..+...| ..+|+++-.|
T Consensus 721 ~~PDvlILDEPTNNLDIESIDALaEAIney~--GgVi~VsHDeRLi~eT~C~LwVvE~Q~i 779 (807)
T KOG0066|consen 721 GGPDVLILDEPTNNLDIESIDALAEAINEYN--GGVIMVSHDERLIVETDCNLWVVENQGI 779 (807)
T ss_pred CCCCEEEecCCCCCcchhhHHHHHHHHHhcc--CcEEEEecccceeeecCceEEEEccCCh
Confidence 9999999999999999999999999998864 46999999999887644 3455555444
|
|
| >cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.85 E-value=3.5e-21 Score=200.96 Aligned_cols=172 Identities=17% Similarity=0.199 Sum_probs=118.1
Q ss_pred ccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCC-CHHHHhhheeEEccCCCcccccHHHHH
Q 001438 400 FDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGL-DLKWLRQQIGLVNQEPALFATTIRENI 478 (1077)
Q Consensus 400 l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~-~~~~~r~~i~~v~Q~~~lf~~ti~~ni 478 (1077)
++++++++.+| +.+|+||||||||||+.+|.-.+..... ....|..+.++ ....-...|.+.+|+.-++. |
T Consensus 12 ~~~~~l~f~~g-l~~i~G~NGsGKStll~ai~~~l~~~~~-~~~r~~~~~~~i~~~~~~~~i~~~~~~~~~~~-----~- 83 (198)
T cd03276 12 HRHLQIEFGPR-VNFIVGNNGSGKSAILTALTIGLGGKAS-DTNRGSSLKDLIKDGESSAKITVTLKNQGLDA-----N- 83 (198)
T ss_pred eeeeEEecCCC-eEEEECCCCCcHHHHHHHHHHHhcCCcc-cccccccHHHHhhCCCCeEEEEEEEEcCCccC-----C-
Confidence 46677888877 8899999999999999998744332211 01112211110 00011345778888766554 2
Q ss_pred hcCCCCCCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHHh----ccCCCEEEEeCcCCCCCHH
Q 001438 479 LYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAI----VKNPSILLLDEATSALDAE 554 (1077)
Q Consensus 479 ~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal----~~~p~illlDEpts~lD~~ 554 (1077)
+ ....+. ....++++. .....++..+||+|||||++||||+ +.+|+++||||||++||..
T Consensus 84 ----~-~~~~~~------~~~~~~l~~-----~~~~~~~~~~lS~G~k~r~~ia~al~~~~~~~p~illlDEP~~glD~~ 147 (198)
T cd03276 84 ----P-LCVLSQ------DMARSFLTS-----NKAAVRDVKTLSGGERSFSTVCLLLSLWEVMESPFRCLDEFDVFMDMV 147 (198)
T ss_pred ----c-CCHHHH------HHHHHHhcc-----ccccCCcccccChhHHHHHHHHHHHHHhcccCCCEEEecCcccccCHH
Confidence 1 111111 112222332 1223456679999999999999999 6899999999999999999
Q ss_pred HHHHHHHHHHHHhC----CCeEEEEccCchhHhhcCEEEEEECCE
Q 001438 555 SENSVQEALDRVMV----GRTTVVVAHRLSTIRNADVIAVVQGRK 595 (1077)
Q Consensus 555 ~~~~i~~~l~~~~~----~~t~i~vtH~~~~~~~~d~i~~l~~G~ 595 (1077)
+...+.+.|.+..+ ++|+|++||+++.+..+|+|-+|..++
T Consensus 148 ~~~~~~~~l~~~~~~~~~~~~iii~th~~~~i~~~d~v~~~~~~~ 192 (198)
T cd03276 148 NRKISTDLLVKEAKKQPGRQFIFITPQDISGLASSDDVKVFRMKD 192 (198)
T ss_pred HHHHHHHHHHHHHhcCCCcEEEEEECCcccccccccceeEEEecC
Confidence 99999999987632 358999999999999999999998754
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for |
| >COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.85 E-value=5.2e-21 Score=208.15 Aligned_cols=182 Identities=24% Similarity=0.418 Sum_probs=138.0
Q ss_pred eEEEEcCCCCCcccccceeEEec-----CCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHHHhhhe
Q 001438 386 DVSFCYPSRPDVAIFDKFCLDIP-----AGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQI 460 (1077)
Q Consensus 386 ~v~~~y~~~~~~~~l~~isl~i~-----~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i 460 (1077)
+.-+.|++- ...+.+..|+++ .||+++++||||-||||++++|+|.++|++|. ..++ +|
T Consensus 340 ~~lv~y~~~--~k~~g~F~L~V~~G~i~~gEvigilGpNgiGKTTFvk~LAG~ikPdeg~----~~~~----------~v 403 (591)
T COG1245 340 DTLVEYPDL--KKTYGDFKLEVEEGEIYDGEVIGILGPNGIGKTTFVKLLAGVIKPDEGS----EEDL----------KV 403 (591)
T ss_pred ceeeecchh--eeecCceEEEecCCeeecceEEEEECCCCcchHHHHHHHhccccCCCCC----Cccc----------eE
Confidence 334555532 224566777765 57889999999999999999999999999998 2222 59
Q ss_pred eEEccCCC-cccccHHHHHhcCCCC-CCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHHhccC
Q 001438 461 GLVNQEPA-LFATTIRENILYGKDD-ATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKN 538 (1077)
Q Consensus 461 ~~v~Q~~~-lf~~ti~~ni~~~~~~-~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~~~ 538 (1077)
+|=||--. -|++||++-+.-..+. ....... . +.+ -|-.++..+..+..+||||+.||+|||-||.++
T Consensus 404 SyKPQyI~~~~~gtV~~~l~~~~~~~~~~s~~~--~------ei~--~pl~l~~i~e~~v~~LSGGELQRvaIaa~L~re 473 (591)
T COG1245 404 SYKPQYISPDYDGTVEDLLRSAIRSAFGSSYFK--T------EIV--KPLNLEDLLERPVDELSGGELQRVAIAAALSRE 473 (591)
T ss_pred eecceeecCCCCCcHHHHHHHhhhhhcccchhH--H------hhc--CccchHHHHhcccccCCchhHHHHHHHHHhccc
Confidence 99999642 3899999987543322 1111000 0 111 133444455566678999999999999999999
Q ss_pred CCEEEEeCcCCCCCHHHHHHHHHHHHHHh--CCCeEEEEccCchhHhh-cCEEEEEEC
Q 001438 539 PSILLLDEATSALDAESENSVQEALDRVM--VGRTTVVVAHRLSTIRN-ADVIAVVQG 593 (1077)
Q Consensus 539 p~illlDEpts~lD~~~~~~i~~~l~~~~--~~~t~i~vtH~~~~~~~-~d~i~~l~~ 593 (1077)
+|++|||||++.||.+.+-.+-+.|++.. .++|.++|-|++-.+.. +||++|.+.
T Consensus 474 ADlYllDEPSA~LDvEqR~~vakvIRR~~e~~~kta~vVdHDi~~~dyvsDr~ivF~G 531 (591)
T COG1245 474 ADLYLLDEPSAYLDVEQRIIVAKVIRRFIENNEKTALVVDHDIYMIDYVSDRLIVFEG 531 (591)
T ss_pred cCEEEecCchhhccHHHHHHHHHHHHHHHhhcCceEEEEecceehhhhhhceEEEEec
Confidence 99999999999999999999999998864 57899999999999987 999998854
|
|
| >KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.85 E-value=6.4e-22 Score=218.98 Aligned_cols=202 Identities=26% Similarity=0.388 Sum_probs=137.3
Q ss_pred cccEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCee--CCCCCHHHH
Q 001438 379 SGHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNN--IKGLDLKWL 456 (1077)
Q Consensus 379 ~~~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~--~~~~~~~~~ 456 (1077)
..+|...|++.+|++ +.+|.+-++++..|..+|+|||||+|||||+++|.. |+|..-..+ ++......
T Consensus 78 ~~Di~~~~fdLa~G~---k~LL~~a~L~L~~GrRYGLvGrNG~GKsTLLRaia~------~~v~~f~veqE~~g~~t~~- 147 (582)
T KOG0062|consen 78 SKDIHIDNFDLAYGG---KILLNKANLTLSRGRRYGLVGRNGIGKSTLLRAIAN------GQVSGFHVEQEVRGDDTEA- 147 (582)
T ss_pred ccceeeeeeeeeecc---hhhhcCCceeeecccccceeCCCCCcHHHHHHHHHh------cCcCccCchhheeccchHH-
Confidence 357899999999974 358999999999999999999999999999999997 444322211 10000000
Q ss_pred hhheeEEccCCCcccccHHHHHhcCCCCCCHHHHHHHHHHHhHHH-HHhcCccchhhhhc-CCCCCCChHHHHHHHHHHH
Q 001438 457 RQQIGLVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMS-FISNLPERFETQVG-ERGIQLSGGQKQRIAISRA 534 (1077)
Q Consensus 457 r~~i~~v~Q~~~lf~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~-~i~~l~~g~~t~~~-~~g~~LSgGqkqri~lARa 534 (1077)
.| ..+-.++-+.-+..-. +++.....+.+..+ .+..+ |+....- .....||||-|-|++||||
T Consensus 148 -------~~-~~l~~D~~~~dfl~~e-----~~l~~~~~l~ei~~~~L~gl--GFt~emq~~pt~slSGGWrMrlaLARA 212 (582)
T KOG0062|consen 148 -------LQ-SVLESDTERLDFLAEE-----KELLAGLTLEEIYDKILAGL--GFTPEMQLQPTKSLSGGWRMRLALARA 212 (582)
T ss_pred -------Hh-hhhhccHHHHHHHHhh-----hhhhccchHHHHHHHHHHhC--CCCHHHHhccccccCcchhhHHHHHHH
Confidence 00 0112222222222111 01111001111111 12222 3433332 3445899999999999999
Q ss_pred hccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEccCchhHhh-cCEEEEEECCEE-EEecChhHHhc
Q 001438 535 IVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRN-ADVIAVVQGRKI-VKTGSHEELIS 607 (1077)
Q Consensus 535 l~~~p~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~vtH~~~~~~~-~d~i~~l~~G~i-~~~g~~~~l~~ 607 (1077)
|..+||||||||||+.||..+-.-+.+.|..+. .|+|+|+|+-+++.. |..|+.+++-++ ...|++++..+
T Consensus 213 lf~~pDlLLLDEPTNhLDv~av~WLe~yL~t~~--~T~liVSHDr~FLn~V~tdIIH~~~~kL~~YkGN~~~Fvk 285 (582)
T KOG0062|consen 213 LFAKPDLLLLDEPTNHLDVVAVAWLENYLQTWK--ITSLIVSHDRNFLNTVCTDIIHLENLKLDYYKGNYSQFVK 285 (582)
T ss_pred HhcCCCEEeecCCcccchhHHHHHHHHHHhhCC--ceEEEEeccHHHHHHHHHHHHHHhhhhhhhhcCcHHHHHH
Confidence 999999999999999999999999999887763 899999999999987 999999988776 35677766654
|
|
| >KOG2355 consensus Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only; Transcription] | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.8e-19 Score=176.56 Aligned_cols=211 Identities=24% Similarity=0.356 Sum_probs=157.4
Q ss_pred cccEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCC-CCH----
Q 001438 379 SGHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKG-LDL---- 453 (1077)
Q Consensus 379 ~~~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~-~~~---- 453 (1077)
+..|++.++.|+|+... |++-|+|++++.|....+||.||||||||+++|.|-.-...|.|.+.|.+--. -..
T Consensus 11 ~~aievsgl~f~y~~~d--P~~~Dfnldlp~gsRcLlVGaNGaGKtTlLKiLsGKhmv~~~~v~VlgrsaFhDt~l~~Sg 88 (291)
T KOG2355|consen 11 DFAIEVSGLQFKYKVSD--PIFFDFNLDLPAGSRCLLVGANGAGKTTLLKILSGKHMVGGGVVQVLGRSAFHDTSLESSG 88 (291)
T ss_pred cceEEEeccEEecccCC--ceEEEEeeccCCCceEEEEecCCCchhhhHHHhcCcccccCCeEEEcCcCccccccccccC
Confidence 45799999999998643 78999999999999999999999999999999999888778999999976421 111
Q ss_pred ------HHHhhheeEEccCCCcccccHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHH
Q 001438 454 ------KWLRQQIGLVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQ 527 (1077)
Q Consensus 454 ------~~~r~~i~~v~Q~~~lf~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkq 527 (1077)
.+|++..+.--.-|.--+-++. .+.||....+.+.-. ++... +|-.+.-+-..+|-|||+
T Consensus 89 dl~YLGgeW~~~~~~agevplq~D~sae-~mifgV~g~dp~Rre---~LI~i----------LDIdl~WRmHkvSDGqrR 154 (291)
T KOG2355|consen 89 DLSYLGGEWSKTVGIAGEVPLQGDISAE-HMIFGVGGDDPERRE---KLIDI----------LDIDLRWRMHKVSDGQRR 154 (291)
T ss_pred ceeEecccccccccccccccccccccHH-HHHhhccCCChhHhh---hhhhh----------eeccceEEEeeccccchh
Confidence 1344444444322221122443 344554322222211 11111 122233355679999999
Q ss_pred HHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh--CCCeEEEEccCchhHhh-cCEEEEEECCEEEEecChhH
Q 001438 528 RIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVM--VGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEE 604 (1077)
Q Consensus 528 ri~lARal~~~p~illlDEpts~lD~~~~~~i~~~l~~~~--~~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~ 604 (1077)
|+.|+..|++.-++|+|||.|--||.-.+..+.+.+++.. +|.|++..||-.+-++. +.+++.|++|+++..-++++
T Consensus 155 RVQicMGLL~PfkVLLLDEVTVDLDVlARadLLeFlkeEce~RgatIVYATHIFDGLe~Wpthl~yi~~Gkl~~~l~~~~ 234 (291)
T KOG2355|consen 155 RVQICMGLLKPFKVLLLDEVTVDLDVLARADLLEFLKEECEQRGATIVYATHIFDGLETWPTHLVYIKSGKLVDNLKYQK 234 (291)
T ss_pred hhHHHHhcccceeEEEeeeeEeehHHHHHHHHHHHHHHHHhhcCcEEEEEeeeccchhhcchhEEEecCCeeeeccccch
Confidence 9999999999999999999999999999999999998753 68999999999998865 99999999999998555544
Q ss_pred H
Q 001438 605 L 605 (1077)
Q Consensus 605 l 605 (1077)
+
T Consensus 235 i 235 (291)
T KOG2355|consen 235 I 235 (291)
T ss_pred h
Confidence 3
|
|
| >cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms | Back alignment and domain information |
|---|
Probab=99.82 E-value=1e-19 Score=186.27 Aligned_cols=84 Identities=24% Similarity=0.280 Sum_probs=76.3
Q ss_pred hcCccchhhhhcCCCCCCChHHHHHHHHHHHhc----cCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCeEEEEccC
Q 001438 504 SNLPERFETQVGERGIQLSGGQKQRIAISRAIV----KNPSILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHR 578 (1077)
Q Consensus 504 ~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~----~~p~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~vtH~ 578 (1077)
..+|+|..|++ ||||||||++|||++. .+|+++++|||+++||+...+.+.+.+.++. +++|+|++||+
T Consensus 84 ~~~~~~~~~~~------LS~Ge~~r~~Laral~~~~~~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~~g~tiIiiSH~ 157 (178)
T cd03239 84 FLVLQGKVEQI------LSGGEKSLSALALIFALQEIKPSPFYVLDEIDAALDPTNRRRVSDMIKEMAKHTSQFIVITLK 157 (178)
T ss_pred EEecCCcCccc------CCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEECC
Confidence 35788888877 9999999999999985 7999999999999999999999999998874 46899999999
Q ss_pred chhHhhcCEEEEEEC
Q 001438 579 LSTIRNADVIAVVQG 593 (1077)
Q Consensus 579 ~~~~~~~d~i~~l~~ 593 (1077)
.+.+..+|+++.+++
T Consensus 158 ~~~~~~adrvi~i~~ 172 (178)
T cd03239 158 KEMFENADKLIGVLF 172 (178)
T ss_pred HHHHhhCCeEEEEEE
Confidence 999989999999876
|
SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression. |
| >cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.78 E-value=5.2e-19 Score=186.58 Aligned_cols=180 Identities=15% Similarity=0.139 Sum_probs=112.7
Q ss_pred cceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHHHhhheeEEccCCCc---cccc----
Q 001438 401 DKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIGLVNQEPAL---FATT---- 473 (1077)
Q Consensus 401 ~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l---f~~t---- 473 (1077)
+++.+++.+| +.+|+||||||||||+.+|.-..-...... ... ....++ +..=.++.++ |...
T Consensus 15 ~~~~i~~~~g-~n~i~G~NgsGKS~lleAi~~~l~~~~~~~-~r~-----~~~~~~---i~~g~~~~~v~~~~~~~~~~~ 84 (213)
T cd03277 15 DETEFRPGPS-LNMIIGPNGSGKSSIVCAICLGLGGKPKLL-GRA-----KKVGEF---VKRGCDEGTIEIELYGNPGNI 84 (213)
T ss_pred ceeEEecCCC-eEEEECCCCCCHHHHHHHHHHHhcCCcccc-ccc-----cCHHHH---hhCCCCcEEEEEEEEeCCCcc
Confidence 4556666555 779999999999999999865542211100 000 011111 0000111111 1110
Q ss_pred HHHHHhcCCCCCCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHH----hccCCCEEEEeCcCC
Q 001438 474 IRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRA----IVKNPSILLLDEATS 549 (1077)
Q Consensus 474 i~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARa----l~~~p~illlDEpts 549 (1077)
..+|+.+- ...+++.+...+... +.+..+|.+.+. -..++.+||||||||+.+|++ ++.+|+++|+||||+
T Consensus 85 ~~~n~~~~---~~q~~~~~~~~~~~~-e~l~~~~~~~~~-~~~~~~~LS~G~~q~~~i~~~la~~~~~~p~llllDEP~~ 159 (213)
T cd03277 85 QVDNLCQF---LPQDRVGEFAKLSPI-ELLVKFREGEQL-QELDPHHQSGGERSVSTMLYLLSLQELTRCPFRVVDEINQ 159 (213)
T ss_pred ccCCceEE---EchHHHHHHHhCChH-hHheeeecCCCc-cccchhhccccHHHHHHHHHHHHHHhccCCCEEEEecccc
Confidence 23333321 133444455554433 445566655432 245678999999999887755 458999999999999
Q ss_pred CCCHHHHHHHHHHHHHHhC--C-CeEEEEccCchhH-hhcC--EEEEEECCE
Q 001438 550 ALDAESENSVQEALDRVMV--G-RTTVVVAHRLSTI-RNAD--VIAVVQGRK 595 (1077)
Q Consensus 550 ~lD~~~~~~i~~~l~~~~~--~-~t~i~vtH~~~~~-~~~d--~i~~l~~G~ 595 (1077)
+||+.+.+.+.+.+.+..+ + .|+|++||++... ..|| +|++|++|+
T Consensus 160 ~LD~~~~~~i~~~l~~~~~~~g~~~viiith~~~~~~~~~~~~~v~~l~~g~ 211 (213)
T cd03277 160 GMDPTNERKVFDMLVETACKEGTSQYFLITPKLLPGLNYHEKMTVLCVYNGP 211 (213)
T ss_pred cCCHHHHHHHHHHHHHHhhcCCCceEEEEchhhccCCcccCceEEEEEecCc
Confidence 9999999999999988743 4 4799999998654 4465 788888886
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for |
| >COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.78 E-value=8.5e-19 Score=191.10 Aligned_cols=191 Identities=22% Similarity=0.372 Sum_probs=135.2
Q ss_pred eEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEE-----------ECCeeCCCCCH-
Q 001438 386 DVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEIL-----------LDGNNIKGLDL- 453 (1077)
Q Consensus 386 ~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~-----------~~g~~~~~~~~- 453 (1077)
++..+|+.+. ..|.++- ..++|+.+||+||||-||||-+++|+|.+.|.=|+-. +.|..+.++-.
T Consensus 79 e~vHRYg~Ng--FkL~~LP-~pr~G~V~GilG~NGiGKsTalkILaGel~PNLG~~~~pp~wdeVi~~FrGtELq~YF~~ 155 (591)
T COG1245 79 EVVHRYGVNG--FKLYRLP-TPRPGKVVGILGPNGIGKSTALKILAGELKPNLGRYEDPPSWDEVIKRFRGTELQNYFKK 155 (591)
T ss_pred cceeeccCCc--eEEecCC-CCCCCcEEEEEcCCCccHHHHHHHHhCccccCCCCCCCCCCHHHHHHHhhhhHHHHHHHH
Confidence 4567786432 2344443 4679999999999999999999999999999877531 11111111100
Q ss_pred ---HHHh--hheeEEccCCCcccccHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHH
Q 001438 454 ---KWLR--QQIGLVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQR 528 (1077)
Q Consensus 454 ---~~~r--~~i~~v~Q~~~lf~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqr 528 (1077)
.++| .++-||.--|-.+.|+++|-+.--...-..+++.+.+. ++..++....+||||+-||
T Consensus 156 l~~g~~r~v~K~QYVd~iPk~~KG~v~elLk~~de~g~~devve~l~--------------L~nvl~r~v~~LSGGELQr 221 (591)
T COG1245 156 LYEGELRAVHKPQYVDLIPKVVKGKVGELLKKVDERGKFDEVVERLG--------------LENVLDRDVSELSGGELQR 221 (591)
T ss_pred HHcCCcceecchHHHHHHHHHhcchHHHHHHhhhhcCcHHHHHHHhc--------------chhhhhhhhhhcCchHHHH
Confidence 0111 12334444466677888876643222223333333332 3334455567899999999
Q ss_pred HHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC-CCeEEEEccCchhHhh-cCEEEEEEC
Q 001438 529 IAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMV-GRTTVVVAHRLSTIRN-ADVIAVVQG 593 (1077)
Q Consensus 529 i~lARal~~~p~illlDEpts~lD~~~~~~i~~~l~~~~~-~~t~i~vtH~~~~~~~-~d~i~~l~~ 593 (1077)
+|||-|+.+++|++++|||+|-||...+-..-+.|+++.+ ++++|+|.|+|..+.. +|-|-++-.
T Consensus 222 ~aIaa~l~rdADvY~FDEpsSyLDi~qRl~~ar~Irel~~~~k~ViVVEHDLavLD~lsD~vhI~YG 288 (591)
T COG1245 222 VAIAAALLRDADVYFFDEPSSYLDIRQRLNAARVIRELAEDGKYVIVVEHDLAVLDYLSDFVHILYG 288 (591)
T ss_pred HHHHHHHhccCCEEEEcCCcccccHHHHHHHHHHHHHHhccCCeEEEEechHHHHHHhhheeEEEec
Confidence 9999999999999999999999999999888889988876 7999999999999987 999888754
|
|
| >cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes | Back alignment and domain information |
|---|
Probab=99.78 E-value=6.5e-19 Score=185.05 Aligned_cols=144 Identities=16% Similarity=0.161 Sum_probs=108.2
Q ss_pred ccceeEEecCCc-EEEEEcCCCCcHHHHHHHHh--------cccCCCccEEEECCeeCCCCCHHHHhhheeEEccCCCcc
Q 001438 400 FDKFCLDIPAGK-IVALVGGSGSGKSTVISLIE--------RFYEPLSGEILLDGNNIKGLDLKWLRQQIGLVNQEPALF 470 (1077)
Q Consensus 400 l~~isl~i~~g~-~~~ivG~~GsGKSTl~~~l~--------g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf 470 (1077)
..++||++++|+ +++|+||||||||||++.|. |.+.|....+ .++|..|.-..
T Consensus 17 ~~~~~~~i~~~~~~~~ltG~Ng~GKStll~~i~~~~~~~~~G~~vp~~~~~-----------------~~~~~~~~~~~- 78 (200)
T cd03280 17 VVPLDIQLGENKRVLVITGPNAGGKTVTLKTLGLLTLMAQSGLPIPAAEGS-----------------SLPVFENIFAD- 78 (200)
T ss_pred eEcceEEECCCceEEEEECCCCCChHHHHHHHHHHHHHHHcCCCccccccc-----------------cCcCccEEEEe-
Confidence 457999999996 79999999999999999988 5444432111 13443333110
Q ss_pred cccHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHHhccCCCEEEEeCcCCC
Q 001438 471 ATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSA 550 (1077)
Q Consensus 471 ~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~~~p~illlDEpts~ 550 (1077)
++ .+..+.++-.++|+|+||+..+++++ .+|+++++|||+++
T Consensus 79 ---------lg----------------------------~~~~l~~~~s~fs~g~~~~~~i~~~~-~~p~llllDEp~~g 120 (200)
T cd03280 79 ---------IG----------------------------DEQSIEQSLSTFSSHMKNIARILQHA-DPDSLVLLDELGSG 120 (200)
T ss_pred ---------cC----------------------------chhhhhcCcchHHHHHHHHHHHHHhC-CCCcEEEEcCCCCC
Confidence 00 01112233457999999999999985 89999999999999
Q ss_pred CCHHHHHHHH-HHHHHHh-CCCeEEEEccCchhHhhcCEEEEEECCEEEEe
Q 001438 551 LDAESENSVQ-EALDRVM-VGRTTVVVAHRLSTIRNADVIAVVQGRKIVKT 599 (1077)
Q Consensus 551 lD~~~~~~i~-~~l~~~~-~~~t~i~vtH~~~~~~~~d~i~~l~~G~i~~~ 599 (1077)
+|+.....+. ..++.+. .+.|+|++||+.+..+.||++.+|++|++...
T Consensus 121 lD~~~~~~i~~~~l~~l~~~~~~vi~~tH~~~l~~~~d~~~~l~~g~l~~~ 171 (200)
T cd03280 121 TDPVEGAALAIAILEELLERGALVIATTHYGELKAYAYKREGVENASMEFD 171 (200)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEECCHHHHHHHHhcCCCeEEEEEEEe
Confidence 9999988885 4566554 47899999999766677999999999999865
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a |
| >cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=99.77 E-value=3.3e-18 Score=188.83 Aligned_cols=76 Identities=18% Similarity=0.267 Sum_probs=70.2
Q ss_pred CCChHHHHHHHHHHHhcc----CCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEccCchhHhhcCEEEEEECCE
Q 001438 520 QLSGGQKQRIAISRAIVK----NPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRNADVIAVVQGRK 595 (1077)
Q Consensus 520 ~LSgGqkqri~lARal~~----~p~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~vtH~~~~~~~~d~i~~l~~G~ 595 (1077)
.|||||+||++|||+++. +|++++|||||++||+.....+.+.+++..++.|+|++||+++....||++++|++|.
T Consensus 170 ~lS~G~~~r~~la~~~~~~~~~~p~vlllDEp~~~Ld~~~~~~l~~~l~~~~~~~tii~isH~~~~~~~~d~~~~l~~~~ 249 (276)
T cd03241 170 IASGGELSRLMLALKAILARKDAVPTLIFDEIDTGISGEVAQAVGKKLKELSRSHQVLCITHLPQVAAMADNHFLVEKEV 249 (276)
T ss_pred hcChhHHHHHHHHHHHHHhcCCCCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEechHHHHHhcCcEEEEEEec
Confidence 499999999999997654 9999999999999999999999999998877899999999999888899999998874
|
The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.77 E-value=3.4e-15 Score=173.91 Aligned_cols=335 Identities=12% Similarity=0.046 Sum_probs=218.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccc---CCchhHHHHHhhcHHHHHHHHHhh
Q 001438 741 TILFCCAAVITVIVHAIEHLSFGIMGERLTLRVREKMFSAILSNEIGWFDEMD---NSSSILASRLESDATLLRTIVVDR 817 (1077)
Q Consensus 741 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~Lr~~l~~~llr~p~~FFD~~~---~~~G~IlnR~s~D~~~i~~~l~~~ 817 (1077)
..+|..++++..+....+.++-.....++-.-|-+.+.++-+...-.||..-. +-+=..-.|+..|+...-+...+.
T Consensus 89 l~~f~~ia~~~v~~~v~~~~L~~~l~~~wR~wLt~~l~~~wl~~~~~y~l~~~~~~~~~dNpDQRi~eDi~~~t~~t~~l 168 (604)
T COG4178 89 LQVFAIIAGLLVLLNVAQTWLNQMLRLRWREWLTKDLLDRWLDPRRYYRLAQAGGIGLIDNPDQRIQEDIRNFTETTLDL 168 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHhcccccCCCChHHhHHHHHHHHHhhHHHH
Confidence 56677777777777777888777777777666777777777776644443211 111123479999999987776666
Q ss_pred HHHHHHHHHHHHHHHHHHHHH---------------hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhHHH
Q 001438 818 STILIQNFGLVTASFVIAFIL---------------NWRITLVVVATYPLIISGHISEKLFFQGYGGNLSKAYLKANMLA 882 (1077)
Q Consensus 818 l~~~~~~~~~~~~~i~i~~~~---------------~w~l~l~~l~~~Pl~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 882 (1077)
...++..+++++.-.++.+-. ...+.++++.-+++.-+...+.++.+.+..-..++..+......
T Consensus 169 ~~g~l~s~islisF~~iLw~lsg~~~~~~~g~~~~I~g~mv~~~i~Ya~~~s~~~~~iGr~Li~LN~~~~~~EA~fR~~L 248 (604)
T COG4178 169 SFGLLQSVISLISFTGILWSLSGGLAFTIGGFSFGIPGYMVWAVIIYAISASLLTHLIGRPLIRLNFERQKLEADFRYSL 248 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHHccCcceEeecccccccchHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHH
Confidence 666777776666655555421 11222333333333333333333333332222233333333334
Q ss_pred HHHHcchHHHHHhcchHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHH
Q 001438 883 AEAVSNIRTVAAFCSEDKVLELYSRELVEPSKRSFIRGQIAGIFYGISQFFIFSSYGLALWYGSVLMGKELASFKSVMKS 962 (1077)
Q Consensus 883 ~Etl~Gi~tIrAf~~e~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~ 962 (1077)
...-++...|..|+.|+.+.++-.+..+..-....+.....-....+.....++...+-+..++-....|.+++|+++..
T Consensus 249 vrv~enaE~IAly~GE~~Er~~l~~~f~~v~~n~~~l~~~~~~l~~~~~gy~~~s~v~P~li~ap~~f~g~i~~G~lmqa 328 (604)
T COG4178 249 VRVRENAEAIALYRGEKVERRRLDDRFDAVLGNWRRLVRAQIRLTWFQLGYGWLSVVLPILIAAPRYFSGQITFGGLMQA 328 (604)
T ss_pred HHHHhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhHHHHHHHHHhccHhhhcCcChHHHHHHH
Confidence 45566777889999998887776665555554433333333333344444444444444445555567899999999999
Q ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHcCCC------CccCCCCcc--c-ccccccEEEeeeeeeCCCCCcc
Q 001438 963 FMVLIVTALAMGETLALVPDLLKGNQMAASVFEVLDRKT------QVIGDIGEE--L-TNVEGTIELRGVHFSYPSRPEV 1033 (1077)
Q Consensus 963 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~l~~~~------~~~~~~~~~--~-~~~~G~I~f~nVsf~Y~~~~~~ 1033 (1077)
..+...+..+++.+...++.+..-.+...|+-++.+.-. +.+...... . ...+..|+|+|++.+=|++.
T Consensus 329 ~~aF~~v~sslswfi~~~~~ia~~rA~~~Rl~~f~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nl~l~~p~~~-- 406 (604)
T COG4178 329 VGAFGQVHSSLSWFIDNYDAIADWRATLLRLAEFRQALEAAQMDTEKPARTGRRIDFDDNADHGITLENLSLRTPDGQ-- 406 (604)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhccCcccccCcccccccccccccceeEEeeeeEECCCCC--
Confidence 888888888999999989999888889999877764222 111111100 0 01157899999999998764
Q ss_pred cccccceeeeeCCCEEEEECCCCCCHHHHHHHHhhccCCCCCCC
Q 001438 1034 VIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKA 1077 (1077)
Q Consensus 1034 ~VLk~vsl~I~~GekVaIVGrTGsGKSTLi~lL~Rfyd~~~G~i 1077 (1077)
+.|+++||+|+|||.+=|.|+||||||||+.+|.++|+--+|+|
T Consensus 407 ~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g~G~I 450 (604)
T COG4178 407 TLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWGSGRI 450 (604)
T ss_pred eeeccceeeeCCCCEEEEECCCCCCHHHHHHHHhccCccCCCce
Confidence 46999999999999999999999999999999999999998875
|
|
| >COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.1e-17 Score=179.93 Aligned_cols=199 Identities=28% Similarity=0.431 Sum_probs=146.4
Q ss_pred CCcccEEEEeEEEEcCCCC-----------------------CcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcc
Q 001438 377 KLSGHIEFKDVSFCYPSRP-----------------------DVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERF 433 (1077)
Q Consensus 377 ~~~~~i~~~~v~~~y~~~~-----------------------~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~ 433 (1077)
+..+.+.++|++..|.+.. ...+|+|+||+|+||+.++|+|+|||||||++++|+|.
T Consensus 353 ~L~~p~~~~~v~k~faS~ld~~~lp~e~~~IleSFGv~~r~ieryvlr~vNL~ikpGdvvaVvGqSGaGKttllRmi~G~ 432 (593)
T COG2401 353 KLEGPIKFKNVTKTFASELDIKGLPNEFQDILESFGVRQRVIERYVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGA 432 (593)
T ss_pred ccCCccccceeeeeeeeeeecccCChHHHHHHHHhcchheeeeeeeeeceeeEecCCCeEEEEecCCCCcchHHHHHHHH
Confidence 3456688888888774311 23579999999999999999999999999999999986
Q ss_pred --------cCCCccEEEECCeeCCCCCHHHHhhheeEEccC--CCcccccHHHHHhcCCCCCCHHHHHHHHHHHhHHHHH
Q 001438 434 --------YEPLSGEILLDGNNIKGLDLKWLRQQIGLVNQE--PALFATTIRENILYGKDDATMEEITRAAKLSEAMSFI 503 (1077)
Q Consensus 434 --------~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~--~~lf~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i 503 (1077)
|.|++|.|.+--..+ -+.+|-+ |.+=.-|+.|.+.- ..-+.....+.+..+++.|-+
T Consensus 433 ~~~~~ee~y~p~sg~v~vp~nt~-----------~a~iPge~Ep~f~~~tilehl~s--~tGD~~~AveILnraGlsDAv 499 (593)
T COG2401 433 QKGRGEEKYRPDSGKVEVPKNTV-----------SALIPGEYEPEFGEVTILEHLRS--KTGDLNAAVEILNRAGLSDAV 499 (593)
T ss_pred hhcccccccCCCCCceeccccch-----------hhccCcccccccCchhHHHHHhh--ccCchhHHHHHHHhhccchhh
Confidence 579999997743322 2334443 33323388777642 111212223333333332221
Q ss_pred hcCccchhhhhcCCCCCCChHHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh--CCCeEEEEccCchh
Q 001438 504 SNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVM--VGRTTVVVAHRLST 581 (1077)
Q Consensus 504 ~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~~~p~illlDEpts~lD~~~~~~i~~~l~~~~--~~~t~i~vtH~~~~ 581 (1077)
.--.+-..||-|||-|..||+++..+|.+++.||.-|.||..|...+...|.++. .+.|.++||||.+.
T Consensus 500 ---------lyRr~f~ELStGQKeR~KLAkllaerpn~~~iDEF~AhLD~~TA~rVArkiselaRe~giTlivvThrpEv 570 (593)
T COG2401 500 ---------LYRRKFSELSTGQKERAKLAKLLAERPNVLLIDEFAAHLDELTAVRVARKISELAREAGITLIVVTHRPEV 570 (593)
T ss_pred ---------hhhccHhhcCcchHHHHHHHHHHhcCCCcEEhhhhhhhcCHHHHHHHHHHHHHHHHHhCCeEEEEecCHHH
Confidence 1123445799999999999999999999999999999999999999999998875 58999999999999
Q ss_pred Hhh--cCEEEEEECCEEE
Q 001438 582 IRN--ADVIAVVQGRKIV 597 (1077)
Q Consensus 582 ~~~--~d~i~~l~~G~i~ 597 (1077)
... -|+++.+.=|++.
T Consensus 571 ~~AL~PD~li~vgYg~v~ 588 (593)
T COG2401 571 GNALRPDTLILVGYGKVP 588 (593)
T ss_pred HhccCCceeEEeeccccc
Confidence 864 6999888766654
|
|
| >PRK00635 excinuclease ABC subunit A; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.3e-17 Score=213.18 Aligned_cols=211 Identities=19% Similarity=0.312 Sum_probs=144.0
Q ss_pred cccceeEEecCCcEEEEEcCCCCcHHHHHHHHh-c----c----cCCCccEEEECCeeCCCCC----------HHHHhhh
Q 001438 399 IFDKFCLDIPAGKIVALVGGSGSGKSTVISLIE-R----F----YEPLSGEILLDGNNIKGLD----------LKWLRQQ 459 (1077)
Q Consensus 399 ~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~-g----~----~~~~~G~i~~~g~~~~~~~----------~~~~r~~ 459 (1077)
-|+|++.+|+-|.+++|.|.||||||||++-.+ . . .+..+--|.||-.+|..-+ .+.+|+-
T Consensus 1505 NLk~v~v~iPlg~l~~vTGVSGSGKStLi~~~l~~~l~~~l~~g~~~~~~vi~vdQspIgrt~RS~paTY~g~fd~IR~l 1584 (1809)
T PRK00635 1505 TIQNLNVSAPLHSLVAISGVSGSGKTSLLLEGFYKQACALIEKGPSVFSEIIFLDSHPQISSQRSDISTYFDIAPSLRNF 1584 (1809)
T ss_pred cCCcceeeccCCcEEEEeCCCCCcHHHHHHHHHHHHHHHHhcccccccCcEEEEeCCCCCCCCCCchhhhhhhHHHHHHH
Confidence 389999999999999999999999999997544 1 1 1223344777777764322 1344544
Q ss_pred eeEEcc------CCCcccc--------------cHHHHHhcCC-----------------------CCCCHHHH-----H
Q 001438 460 IGLVNQ------EPALFAT--------------TIRENILYGK-----------------------DDATMEEI-----T 491 (1077)
Q Consensus 460 i~~v~Q------~~~lf~~--------------ti~~ni~~~~-----------------------~~~~~~~~-----~ 491 (1077)
.+-.|+ .|..|+- .++=++.|-. ...+-.++ .
T Consensus 1585 FA~~~~ak~rg~~~~~FSfN~~~GrC~~C~G~G~i~i~m~fl~dv~~~C~~C~G~R~~~e~L~v~~~gk~I~dvL~mtv~ 1664 (1809)
T PRK00635 1585 YASLTQAKALNISASMFSTNTKQGQCSDCWGLGYQWIDRAFYALEKRPCPTCSGFRIQPLAQEVVYEGKHFGQLLQTPIE 1664 (1809)
T ss_pred HhcCHHHHHcCCCcccccccCCCCCCCCCccCceEEEecccCCCcccCCCCCCCcCCCHHHHhheeCCCCHHHHhcCCHH
Confidence 332221 1111211 1111111100 00000111 1
Q ss_pred HH-------HHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHHhccC---CCEEEEeCcCCCCCHHHHHHHHH
Q 001438 492 RA-------AKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKN---PSILLLDEATSALDAESENSVQE 561 (1077)
Q Consensus 492 ~~-------~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~~~---p~illlDEpts~lD~~~~~~i~~ 561 (1077)
+| .++...++.+..+--||- .+|+...+|||||.|||-||.-|.++ +.++||||||.+|+++.-+.+.+
T Consensus 1665 ea~~~F~~~~~i~~~L~~L~~vGLgYl-~LGq~~~tLSGGE~qRikLa~~l~~~~~~~~lyilDEPt~GLh~~d~~~Ll~ 1743 (1809)
T PRK00635 1665 EVAETFPFLKKIQKPLQALIDNGLGYL-PLGQNLSSLSLSEKIAIKIAKFLYLPPKHPTLFLLDEIATSLDNQQKSALLV 1743 (1809)
T ss_pred HHHHHhhccHHHHHHHHHHHHcCCCee-eCCCcCCccCchHHHHHHHHHHHhcCCCCCcEEEEcCCCCCCCHHHHHHHHH
Confidence 11 112222233333433543 36899999999999999999999876 78999999999999999999999
Q ss_pred HHHHH-hCCCeEEEEccCchhHhhcCEEEEE------ECCEEEEecChhHHhcCCC
Q 001438 562 ALDRV-MVGRTTVVVAHRLSTIRNADVIAVV------QGRKIVKTGSHEELISNPN 610 (1077)
Q Consensus 562 ~l~~~-~~~~t~i~vtH~~~~~~~~d~i~~l------~~G~i~~~g~~~~l~~~~~ 610 (1077)
.+.++ .+|.|+|+|.|+++.++.||+|+-| +.|+|+.+|+|+++.++++
T Consensus 1744 ~l~~L~~~g~tvivieH~~~~i~~aD~iidlgp~gG~~GG~iva~Gtp~~i~~~~~ 1799 (1809)
T PRK00635 1744 QLRTLVSLGHSVIYIDHDPALLKQADYLIEMGPGSGKTGGKILFSGPPKDISASKD 1799 (1809)
T ss_pred HHHHHHhcCCeEEEEeCCHHHHHhCCEEEEcCCCcccCCCEEEEEeCHHHHhhCCC
Confidence 99887 4799999999999999999999999 5689999999999987644
|
|
| >COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.73 E-value=2.4e-17 Score=191.84 Aligned_cols=97 Identities=32% Similarity=0.573 Sum_probs=90.1
Q ss_pred hhcCCCCCCChHHHHHHHHHHHhccCC---CEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCeEEEEccCchhHhhcCEE
Q 001438 513 QVGERGIQLSGGQKQRIAISRAIVKNP---SILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLSTIRNADVI 588 (1077)
Q Consensus 513 ~~~~~g~~LSgGqkqri~lARal~~~p---~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~vtH~~~~~~~~d~i 588 (1077)
.+|+...+|||||.|||-||.-|.++. -++||||||.+|-.+--+++++.|.++. +|.|||+|-|+|+.++.||.|
T Consensus 815 ~LGQpatTLSGGEaQRvKLA~EL~k~~tg~TlYiLDEPTTGLH~~Di~kLl~VL~rLvd~GnTViVIEHNLdVIk~AD~I 894 (935)
T COG0178 815 KLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFDDIKKLLEVLHRLVDKGNTVIVIEHNLDVIKTADWI 894 (935)
T ss_pred ecCCccccccchHHHHHHHHHHHhhccCCCeEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecccceEeecCEE
Confidence 468888999999999999999999988 9999999999999999999999998874 799999999999999999999
Q ss_pred EEE------ECCEEEEecChhHHhcCC
Q 001438 589 AVV------QGRKIVKTGSHEELISNP 609 (1077)
Q Consensus 589 ~~l------~~G~i~~~g~~~~l~~~~ 609 (1077)
+=| +.|+|+.+|+|+|+.+.+
T Consensus 895 IDLGPeGG~~GG~iva~GTPeeva~~~ 921 (935)
T COG0178 895 IDLGPEGGDGGGEIVASGTPEEVAKVK 921 (935)
T ss_pred EEcCCCCCCCCceEEEecCHHHHHhCc
Confidence 988 578999999999998764
|
|
| >cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.7e-17 Score=177.69 Aligned_cols=199 Identities=19% Similarity=0.251 Sum_probs=133.9
Q ss_pred EEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEE--EECCeeCCCCCHHHHhhhe--eEEccCCCcccccHHHHHhc
Q 001438 405 LDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEI--LLDGNNIKGLDLKWLRQQI--GLVNQEPALFATTIRENILY 480 (1077)
Q Consensus 405 l~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i--~~~g~~~~~~~~~~~r~~i--~~v~Q~~~lf~~ti~~ni~~ 480 (1077)
+.+.+||.++|+||+|+|||||++.+.+.++...+.+ .+-...-+..+..++.+.+ .+|-.+. +.+....+..
T Consensus 11 ~~i~~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~---~~~~~~~~~~ 87 (249)
T cd01128 11 APIGKGQRGLIVAPPKAGKTTLLQSIANAITKNHPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTF---DEPPERHVQV 87 (249)
T ss_pred cccCCCCEEEEECCCCCCHHHHHHHHHhccccccCCeEEEEEEccCCCccHHHHHHHhccEEEEecC---CCCHHHHHHH
Confidence 4889999999999999999999999999887764333 2221111123444444333 0000000 0000000000
Q ss_pred CCCCCCHHHHHHHHHHH-------hHHHHHhcCccchhhhhcCCCCCCChHH--------HHHHHHHHHhccCCCEEEEe
Q 001438 481 GKDDATMEEITRAAKLS-------EAMSFISNLPERFETQVGERGIQLSGGQ--------KQRIAISRAIVKNPSILLLD 545 (1077)
Q Consensus 481 ~~~~~~~~~~~~~~~~~-------~~~~~i~~l~~g~~t~~~~~g~~LSgGq--------kqri~lARal~~~p~illlD 545 (1077)
.+.....+.... -..|.+.+++.++++..++.|..+|||| +||+++||++.++++|.+|
T Consensus 88 -----~~~~~~~a~~~~~~G~~vll~iDei~r~a~a~~ev~~~~G~~~sgG~~~~~~~~~~q~~~~Ar~~~~~gsIt~l- 161 (249)
T cd01128 88 -----AEMVLEKAKRLVEHGKDVVILLDSITRLARAYNTVVPPSGKILSGGVDANALHKPKRFFGAARNIEEGGSLTII- 161 (249)
T ss_pred -----HHHHHHHHHHHHHCCCCEEEEEECHHHhhhhhhhccccCCCCCCCCcChhhhhhhHHHHHHhcCCCCCCceEEe-
Confidence 000011111110 0123466788999999999999999999 9999999999999999999
Q ss_pred CcCCCCCHHHHHH-HHHHHHHHh-CCCeEEEEccCchhHhhcCEEEEEECCEEEEecChhHHhcCCCchHHHHHHHHH
Q 001438 546 EATSALDAESENS-VQEALDRVM-VGRTTVVVAHRLSTIRNADVIAVVQGRKIVKTGSHEELISNPNSAYAALVQLQE 621 (1077)
Q Consensus 546 Epts~lD~~~~~~-i~~~l~~~~-~~~t~i~vtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~ 621 (1077)
||+.+|+.++.. ++ +..+. .++|.|+++|++....++|.|.||+.|++ +++++.. ++.|..+...+.
T Consensus 162 -~T~~~d~~~~~~~~i--~~~~~~~~~~~ivls~~la~~~~~paI~vl~s~sr-----~~~ll~~-~~~~~~~~~~r~ 230 (249)
T cd01128 162 -ATALVDTGSRMDDVI--FEEFKGTGNMELVLDRRLAERRIFPAIDILKSGTR-----KEELLLD-PEELQRMWLLRR 230 (249)
T ss_pred -eeheecCCCcccchH--HHHHhcCCCcEEEEchHHhhCCCCCeEEEcCCCCc-----cchhhCC-HHHHHHHHHHHH
Confidence 999999765543 43 34443 57899999999999999999999999997 6777765 567776655443
|
It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain. |
| >cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport | Back alignment and domain information |
|---|
Probab=99.72 E-value=2.5e-17 Score=166.81 Aligned_cols=136 Identities=24% Similarity=0.331 Sum_probs=100.3
Q ss_pred eeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHHHhhheeE-EccCCCcccccHHHHHhcC
Q 001438 403 FCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIGL-VNQEPALFATTIRENILYG 481 (1077)
Q Consensus 403 isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~-v~Q~~~lf~~ti~~ni~~~ 481 (1077)
.++.+.++.++.|+|||||||||+++.+.-..-..+|.+.... +. +.++ +++...-|
T Consensus 14 ~~i~~~~~~~~~i~G~NgsGKS~~l~~i~~~~~~~~~~~~~~~-~~----------~~g~~~~~~~~~~----------- 71 (162)
T cd03227 14 NDVTFGEGSLTIITGPNGSGKSTILDAIGLALGGAQSATRRRS-GV----------KAGCIVAAVSAEL----------- 71 (162)
T ss_pred cEEecCCCCEEEEECCCCCCHHHHHHHHHHHHHhcchhhhccC-cc----------cCCCcceeeEEEE-----------
Confidence 3344555679999999999999999997766555555443311 00 1111 11111101
Q ss_pred CCCCCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHHhcc----CCCEEEEeCcCCCCCHHHHH
Q 001438 482 KDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVK----NPSILLLDEATSALDAESEN 557 (1077)
Q Consensus 482 ~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~~----~p~illlDEpts~lD~~~~~ 557 (1077)
+ -+. .+||+||+||++|||++.. +|+++|+|||++++|+....
T Consensus 72 ---------------------i-------~~~-----~~lS~G~~~~~~la~~L~~~~~~~~~llllDEp~~gld~~~~~ 118 (162)
T cd03227 72 ---------------------I-------FTR-----LQLSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQ 118 (162)
T ss_pred ---------------------e-------hhe-----eeccccHHHHHHHHHHHHhcCCCCCCEEEEeCCCCCCCHHHHH
Confidence 0 000 1299999999999999986 78999999999999999999
Q ss_pred HHHHHHHHHh-CCCeEEEEccCchhHhhcCEEEEEEC
Q 001438 558 SVQEALDRVM-VGRTTVVVAHRLSTIRNADVIAVVQG 593 (1077)
Q Consensus 558 ~i~~~l~~~~-~~~t~i~vtH~~~~~~~~d~i~~l~~ 593 (1077)
.+.+.+.+.. ++.++|++||+.+....+|+++.|+.
T Consensus 119 ~l~~~l~~~~~~~~~vii~TH~~~~~~~~d~~~~l~~ 155 (162)
T cd03227 119 ALAEAILEHLVKGAQVIVITHLPELAELADKLIHIKK 155 (162)
T ss_pred HHHHHHHHHHhcCCEEEEEcCCHHHHHhhhhEEEEEE
Confidence 9999888764 46899999999999999999999965
|
These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins. |
| >cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage | Back alignment and domain information |
|---|
Probab=99.67 E-value=5.3e-16 Score=170.70 Aligned_cols=190 Identities=18% Similarity=0.248 Sum_probs=117.2
Q ss_pred ccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCC----------------C-----------------------cc-
Q 001438 400 FDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEP----------------L-----------------------SG- 439 (1077)
Q Consensus 400 l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~----------------~-----------------------~G- 439 (1077)
+++.++++.+| +.+|+|||||||||++.+|.-+... + +|
T Consensus 12 ~~~~~~~~~~~-~~~i~G~NGsGKS~ll~Ai~~~~~~~~~r~~~~~~~i~~~~~~~~v~~~f~~~~~~~~i~~~~~~~~~ 90 (270)
T cd03242 12 YAELELEFEPG-VTVLVGENAQGKTNLLEAISLLATGKSHRTSRDKELIRWGAEEAKISAVLERQGGELALELTIRSGGG 90 (270)
T ss_pred cceeEEecCCC-eEEEECCCCCCHHHHHHHHHHhccCCCCCCCCHHHHHhcCCCCEEEEEEEEeCCCeEEEEEEEEcCCc
Confidence 45567777776 7899999999999999887533311 0 11
Q ss_pred -EEEECCeeCCCCCHHHHh---hheeEEccCCCccccc------HHHHHhcCCCCCCHHHHH-HHHHHHhHHHHHhcCcc
Q 001438 440 -EILLDGNNIKGLDLKWLR---QQIGLVNQEPALFATT------IRENILYGKDDATMEEIT-RAAKLSEAMSFISNLPE 508 (1077)
Q Consensus 440 -~i~~~g~~~~~~~~~~~r---~~i~~v~Q~~~lf~~t------i~~ni~~~~~~~~~~~~~-~~~~~~~~~~~i~~l~~ 508 (1077)
.+.+||..++. ..++. ..|.+.|++..|+.++ +.|.+.... ...+.+.. +..+.....+.+..-|+
T Consensus 91 ~~~~ing~~~~~--l~~l~~~l~~i~~~~~~~~l~~~~p~~rr~~lD~~~~~~-~~~y~~~~~~~~~~~~~~~~~~~g~~ 167 (270)
T cd03242 91 RKARLNGIKVRR--LSDLLGVLNAVWFAPEDLELVKGSPADRRRFLDRLLGQL-EPAYAHVLSEYQKALRQRNALLKGPH 167 (270)
T ss_pred eEEEECCeeccC--HHHHhCcCcEEEEecchhhhhcCCHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 23455555433 23332 3466667666777432 222222211 11121111 11111111111222355
Q ss_pred chhhhhcCCC----CCCChHHHHHHHHHHHhc---------cCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEE
Q 001438 509 RFETQVGERG----IQLSGGQKQRIAISRAIV---------KNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVV 575 (1077)
Q Consensus 509 g~~t~~~~~g----~~LSgGqkqri~lARal~---------~~p~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~v 575 (1077)
.++..+.-++ ..+|+||||+++|||+++ .+|+++||||||++||+...+.+.+.+.+.. .++++
T Consensus 168 ~d~l~~~vd~~~~~~~lS~Gq~~~~~la~~la~~~~~~~~~~~~~illlDEp~a~LD~~~~~~l~~~l~~~~---q~ii~ 244 (270)
T cd03242 168 RDDLLFFLNDKPAADFGSQGQQRTLALALKLAEIQLIKEVSGEYPVLLLDDVLAELDLGRQAALLDAIEGRV---QTFVT 244 (270)
T ss_pred hhheEEEECCEeHHHhCChHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEcCcchhcCHHHHHHHHHHhhcCC---CEEEE
Confidence 5554433222 348999999999999984 7999999999999999999999999987652 45666
Q ss_pred ccCchhHhh-c---CEEEEEECCEE
Q 001438 576 AHRLSTIRN-A---DVIAVVQGRKI 596 (1077)
Q Consensus 576 tH~~~~~~~-~---d~i~~l~~G~i 596 (1077)
+|+...+.. | ++|+.+++|+|
T Consensus 245 ~~~~~~~~~~~~~~~~i~~l~~g~i 269 (270)
T cd03242 245 TTDLADFDALWLRRAQIFRVDAGTL 269 (270)
T ss_pred eCCchhccchhccCccEEEEeCcEE
Confidence 666555543 5 78999999986
|
When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.67 E-value=2.2e-16 Score=167.64 Aligned_cols=152 Identities=20% Similarity=0.187 Sum_probs=110.3
Q ss_pred cccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHHHhhhee-EEccCCCcccccHH
Q 001438 397 VAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIG-LVNQEPALFATTIR 475 (1077)
Q Consensus 397 ~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~-~v~Q~~~lf~~ti~ 475 (1077)
..+.+|++++.++|++++|.|||||||||+++.+.- -.+-.++| |||.+...++ +.
T Consensus 17 ~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~---------------------~~~la~~g~~vpa~~~~~~--~~ 73 (222)
T cd03285 17 AFIPNDVTLTRGKSRFLIITGPNMGGKSTYIRQIGV---------------------IVLMAQIGCFVPCDSADIP--IV 73 (222)
T ss_pred CeEEeeEEEeecCCeEEEEECCCCCChHHHHHHHHH---------------------HHHHHHhCCCcCcccEEEe--cc
Confidence 357899999999999999999999999999999882 12233566 6776543221 11
Q ss_pred HHHhcCCCCCCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHHh--ccCCCEEEEeCc---CCC
Q 001438 476 ENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAI--VKNPSILLLDEA---TSA 550 (1077)
Q Consensus 476 ~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal--~~~p~illlDEp---ts~ 550 (1077)
|.|. ..+... +. ....+|.|++|+..+++++ +.+|+++||||| |++
T Consensus 74 ~~il------------------------~~~~l~-d~----~~~~lS~~~~e~~~~a~il~~~~~~sLvLLDEp~~gT~~ 124 (222)
T cd03285 74 DCIL------------------------ARVGAS-DS----QLKGVSTFMAEMLETAAILKSATENSLIIIDELGRGTST 124 (222)
T ss_pred ceeE------------------------eeeccc-cc----hhcCcChHHHHHHHHHHHHHhCCCCeEEEEecCcCCCCh
Confidence 1111 011100 01 1246999999999999999 899999999999 999
Q ss_pred CCHHHHHHH-HHHHHHHhCCCeEEEEccCchhHhhcCEEEEEECCEEEEecC
Q 001438 551 LDAESENSV-QEALDRVMVGRTTVVVAHRLSTIRNADVIAVVQGRKIVKTGS 601 (1077)
Q Consensus 551 lD~~~~~~i-~~~l~~~~~~~t~i~vtH~~~~~~~~d~i~~l~~G~i~~~g~ 601 (1077)
+|+...... .+.+.+ ..++++|++||..+..+.||++..+++|++...++
T Consensus 125 lD~~~~~~~il~~l~~-~~~~~vlisTH~~el~~~~~~~~~i~~g~~~~~~~ 175 (222)
T cd03285 125 YDGFGLAWAIAEYIAT-QIKCFCLFATHFHELTALADEVPNVKNLHVTALTD 175 (222)
T ss_pred HHHHHHHHHHHHHHHh-cCCCeEEEEechHHHHHHhhcCCCeEEEEEEEEEe
Confidence 999866543 344443 34789999999644555699999999999987653
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c |
| >PRK00349 uvrA excinuclease ABC subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.3e-15 Score=189.92 Aligned_cols=95 Identities=33% Similarity=0.525 Sum_probs=88.4
Q ss_pred hcCCCCCCChHHHHHHHHHHHhccCC--CEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCeEEEEccCchhHhhcCEEEE
Q 001438 514 VGERGIQLSGGQKQRIAISRAIVKNP--SILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLSTIRNADVIAV 590 (1077)
Q Consensus 514 ~~~~g~~LSgGqkqri~lARal~~~p--~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~vtH~~~~~~~~d~i~~ 590 (1077)
.+....+|||||||||+|||||..+| ++|||||||++||++..+.+.+.|+++. +|.|+|+|+|+++.+..||+|++
T Consensus 483 l~r~~~~LSgGE~QRv~LA~aL~~~~~~~llILDEPtagLd~~~~~~L~~~L~~L~~~G~TVIvVeH~~~~i~~aD~vi~ 562 (943)
T PRK00349 483 LSRSAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNDRLIETLKHLRDLGNTLIVVEHDEDTIRAADYIVD 562 (943)
T ss_pred CCCchhhCCHHHHHHHHHHHHHhhCCCCcEEEecCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhCCEEEE
Confidence 46677899999999999999999997 9999999999999999999999999875 48999999999999988999999
Q ss_pred E------ECCEEEEecChhHHhcC
Q 001438 591 V------QGRKIVKTGSHEELISN 608 (1077)
Q Consensus 591 l------~~G~i~~~g~~~~l~~~ 608 (1077)
| ++|+|+..|+++++...
T Consensus 563 LgpgaG~~~G~iv~~g~~~e~~~~ 586 (943)
T PRK00349 563 IGPGAGVHGGEVVASGTPEEIMKN 586 (943)
T ss_pred eccccCCCCCEEeeccCHHHHhcC
Confidence 9 99999999999998654
|
|
| >TIGR00630 uvra excinuclease ABC, A subunit | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.4e-15 Score=189.18 Aligned_cols=95 Identities=32% Similarity=0.526 Sum_probs=88.3
Q ss_pred hcCCCCCCChHHHHHHHHHHHhccCC--CEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCeEEEEccCchhHhhcCEEEE
Q 001438 514 VGERGIQLSGGQKQRIAISRAIVKNP--SILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLSTIRNADVIAV 590 (1077)
Q Consensus 514 ~~~~g~~LSgGqkqri~lARal~~~p--~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~vtH~~~~~~~~d~i~~ 590 (1077)
.+....+|||||+||+.|||||..+| ++|||||||++||++..+.+.+.|+++. +|.|+|+|+|+++.+..||+|++
T Consensus 481 l~r~~~tLSGGE~QRv~LA~aL~~~~~~~llILDEPtagLD~~~~~~L~~~L~~L~~~G~TVIvVeHd~~~i~~aD~vi~ 560 (924)
T TIGR00630 481 LSRAAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLINTLKRLRDLGNTVIVVEHDEETIRAADYVID 560 (924)
T ss_pred cCCCcCcCCHHHHHHHHHHHHHhhCCCCcEEEEcCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHhhCCEEEE
Confidence 46778899999999999999999986 8999999999999999999999999875 58999999999999999999999
Q ss_pred E------ECCEEEEecChhHHhcC
Q 001438 591 V------QGRKIVKTGSHEELISN 608 (1077)
Q Consensus 591 l------~~G~i~~~g~~~~l~~~ 608 (1077)
| ++|+|++.|+++++...
T Consensus 561 LgpgaG~~~G~Iv~~g~~~el~~~ 584 (924)
T TIGR00630 561 IGPGAGIHGGEVVASGTPEEILAN 584 (924)
T ss_pred ecccccCCCCEEeeccCHHHHhcC
Confidence 9 99999999999998654
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch | Back alignment and domain information |
|---|
Probab=99.62 E-value=6.5e-16 Score=162.69 Aligned_cols=153 Identities=14% Similarity=0.157 Sum_probs=103.1
Q ss_pred ceeEEecCCcEEEEEcCCCCcHHHHHHHHhcc-cCCCccEEEECCeeCCCCCHHHHhhheeEEccCCCcccccHHHHHhc
Q 001438 402 KFCLDIPAGKIVALVGGSGSGKSTVISLIERF-YEPLSGEILLDGNNIKGLDLKWLRQQIGLVNQEPALFATTIRENILY 480 (1077)
Q Consensus 402 ~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~-~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~~ni~~ 480 (1077)
..++++.+|++++|+||||||||||+++|.+. +.+..|.... . .+..+++..|....|+ ..+
T Consensus 21 ~~~~~l~~~~~~~l~G~Ng~GKStll~~i~~~~~~~~~g~~~~-~----------~~~~i~~~dqi~~~~~--~~d---- 83 (202)
T cd03243 21 PNDINLGSGRLLLITGPNMGGKSTYLRSIGLAVLLAQIGCFVP-A----------ESASIPLVDRIFTRIG--AED---- 83 (202)
T ss_pred eeeEEEcCCeEEEEECCCCCccHHHHHHHHHHHHHHHcCCCcc-c----------cccccCCcCEEEEEec--Ccc----
Confidence 34556678999999999999999999999943 3223332110 0 0112333222111110 000
Q ss_pred CCCCCCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHH
Q 001438 481 GKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQ 560 (1077)
Q Consensus 481 ~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~~~p~illlDEpts~lD~~~~~~i~ 560 (1077)
.+.++-..++++++| +..+.+...+|+++|+|||++++|+.....+.
T Consensus 84 --------------------------------~i~~~~s~~~~e~~~-l~~i~~~~~~~~llllDEp~~gld~~~~~~l~ 130 (202)
T cd03243 84 --------------------------------SISDGRSTFMAELLE-LKEILSLATPRSLVLIDELGRGTSTAEGLAIA 130 (202)
T ss_pred --------------------------------cccCCceeHHHHHHH-HHHHHHhccCCeEEEEecCCCCCCHHHHHHHH
Confidence 111223456666665 66667778999999999999999999877665
Q ss_pred HH-HHHHh-CCCeEEEEccCchhHhhcCEEEEEECCEEEEecChhH
Q 001438 561 EA-LDRVM-VGRTTVVVAHRLSTIRNADVIAVVQGRKIVKTGSHEE 604 (1077)
Q Consensus 561 ~~-l~~~~-~~~t~i~vtH~~~~~~~~d~i~~l~~G~i~~~g~~~~ 604 (1077)
.. ++.+. .+.++|++||+.+.+..+|++..+++|++.+.++..+
T Consensus 131 ~~ll~~l~~~~~~vi~~tH~~~~~~~~~~~~~l~~~~~~~~~~~~~ 176 (202)
T cd03243 131 YAVLEHLLEKGCRTLFATHFHELADLPEQVPGVKNLHMEELITTGG 176 (202)
T ss_pred HHHHHHHHhcCCeEEEECChHHHHHHhhcCCCeEEEEEEEEecCCe
Confidence 44 44443 4789999999999999999999999999988876433
|
Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru |
| >cd03283 ABC_MutS-like MutS-like homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.61 E-value=1e-15 Score=159.78 Aligned_cols=136 Identities=15% Similarity=0.225 Sum_probs=93.9
Q ss_pred ccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHHHhhheeEEccCCCcccc-cHHH
Q 001438 398 AIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIGLVNQEPALFAT-TIRE 476 (1077)
Q Consensus 398 ~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~-ti~~ 476 (1077)
++++|++++. |++++|+||||||||||+++|.|... +...|.++.. -.+++|...+|.. |++|
T Consensus 15 ~v~n~i~l~~--g~~~~ltGpNg~GKSTllr~i~~~~~-----l~~~G~~v~a---------~~~~~q~~~l~~~~~~~d 78 (199)
T cd03283 15 RVANDIDMEK--KNGILITGSNMSGKSTFLRTIGVNVI-----LAQAGAPVCA---------SSFELPPVKIFTSIRVSD 78 (199)
T ss_pred eecceEEEcC--CcEEEEECCCCCChHHHHHHHHHHHH-----HHHcCCEEec---------CccCcccceEEEeccchh
Confidence 5778887664 79999999999999999999987543 1235555432 1356675566655 9999
Q ss_pred HHhcCCCCCCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHH
Q 001438 477 NILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESE 556 (1077)
Q Consensus 477 ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~~~p~illlDEpts~lD~~~~ 556 (1077)
|+.++.... ..+.. +...+ ++.+. ..+|+++|+|||++++|+...
T Consensus 79 ~l~~~~s~~-~~e~~---~~~~i---L~~~~----------------------------~~~p~llllDEp~~glD~~~~ 123 (199)
T cd03283 79 DLRDGISYF-YAELR---RLKEI---VEKAK----------------------------KGEPVLFLLDEIFKGTNSRER 123 (199)
T ss_pred ccccccChH-HHHHH---HHHHH---HHhcc----------------------------CCCCeEEEEecccCCCCHHHH
Confidence 998875321 12221 11222 22111 079999999999999999988
Q ss_pred HHHHH-HHHHH-hCCCeEEEEccCchhHhh
Q 001438 557 NSVQE-ALDRV-MVGRTTVVVAHRLSTIRN 584 (1077)
Q Consensus 557 ~~i~~-~l~~~-~~~~t~i~vtH~~~~~~~ 584 (1077)
..+.. .++.+ .++.|+|++||+++.+..
T Consensus 124 ~~l~~~ll~~l~~~~~tiiivTH~~~~~~~ 153 (199)
T cd03283 124 QAASAAVLKFLKNKNTIGIISTHDLELADL 153 (199)
T ss_pred HHHHHHHHHHHHHCCCEEEEEcCcHHHHHh
Confidence 76644 45554 357899999999987654
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid |
| >KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.1e-15 Score=164.86 Aligned_cols=191 Identities=24% Similarity=0.380 Sum_probs=128.6
Q ss_pred cEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcc--cCCCccEEEECCeeCCCCCHHHHhh
Q 001438 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERF--YEPLSGEILLDGNNIKGLDLKWLRQ 458 (1077)
Q Consensus 381 ~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~--~~~~~G~i~~~g~~~~~~~~~~~r~ 458 (1077)
.|.++|.+.+-.+ +..+.|-||.|-.|..+++|||||-|||||++-|..- --|..=.
T Consensus 264 DIKiEnF~ISA~G---k~LFvnA~L~Iv~GRRYGLVGPNG~GKTTLLkHIa~RalaIPpnID------------------ 322 (807)
T KOG0066|consen 264 DIKIENFDISAQG---KLLFVNASLTIVYGRRYGLVGPNGMGKTTLLKHIAARALAIPPNID------------------ 322 (807)
T ss_pred cceeeeeeeeccc---ceeeeccceEEEecceecccCCCCCchHHHHHHHHhhhccCCCCCc------------------
Confidence 4778887776543 3478899999999999999999999999999988742 2222222
Q ss_pred heeEEccCCCcccccHHHHHhc---------------------CCCC--CCHHHHHHHHHH-------HhHHHHHhcCcc
Q 001438 459 QIGLVNQEPALFATTIRENILY---------------------GKDD--ATMEEITRAAKL-------SEAMSFISNLPE 508 (1077)
Q Consensus 459 ~i~~v~Q~~~lf~~ti~~ni~~---------------------~~~~--~~~~~~~~~~~~-------~~~~~~i~~l~~ 508 (1077)
+-||-|+...-+.|.-+.++- |... .+.+++...++. +.+...+..|
T Consensus 323 -vLlCEQEvvad~t~Ai~tvl~aD~kRl~lLeee~~L~~q~e~Gd~taaErl~~v~~ELraiGA~sAEarARRILAGL-- 399 (807)
T KOG0066|consen 323 -VLLCEQEVVADSTSAIDTVLKADKKRLALLEEEAKLMSQIEEGDTTAAERLKEVADELRAIGADSAEARARRILAGL-- 399 (807)
T ss_pred -eEeeeeeeeecCcHHHHHHHHhhHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHhccccchhHHHHHHhhc--
Confidence 334444433322222222211 1000 000011110110 1111112222
Q ss_pred chhhhhcCCCC-CCChHHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEccCchhHhh-cC
Q 001438 509 RFETQVGERGI-QLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRN-AD 586 (1077)
Q Consensus 509 g~~t~~~~~g~-~LSgGqkqri~lARal~~~p~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~vtH~~~~~~~-~d 586 (1077)
|++..+.+++. .+|||-|-||+|||||+..|-+|.|||||.+||....--+-+.|..+ .+|.++|+|+-.++.. |.
T Consensus 400 GFskEMQ~rPt~kFSGGWRMRvSLARALflEPTLLMLDEPTNHLDLNAVIWLdNYLQgW--kKTLLIVSHDQgFLD~VCt 477 (807)
T KOG0066|consen 400 GFSKEMQERPTTKFSGGWRMRVSLARALFLEPTLLMLDEPTNHLDLNAVIWLDNYLQGW--KKTLLIVSHDQGFLDSVCT 477 (807)
T ss_pred CCChhHhcCCccccCCceeeehhHHHHHhcCceeeeecCCccccccceeeehhhHHhhh--hheeEEEecccchHHHHHH
Confidence 56666666665 59999999999999999999999999999999998777777777665 4799999999999987 99
Q ss_pred EEEEEECCEEE
Q 001438 587 VIAVVQGRKIV 597 (1077)
Q Consensus 587 ~i~~l~~G~i~ 597 (1077)
.|+.|++-++.
T Consensus 478 dIIHLD~qkLh 488 (807)
T KOG0066|consen 478 DIIHLDNQKLH 488 (807)
T ss_pred HHhhhhhhhhh
Confidence 99999987653
|
|
| >cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.5e-15 Score=138.67 Aligned_cols=75 Identities=19% Similarity=0.168 Sum_probs=70.8
Q ss_pred ccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHHHhhheeEEccCCCcccccHHHH
Q 001438 398 AIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIGLVNQEPALFATTIREN 477 (1077)
Q Consensus 398 ~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~~n 477 (1077)
++|++++|++++||.++|+||||||||||++++. +|++.++|.|+..++.++.++.++++||+ +|.+||+||
T Consensus 3 ~aL~~vsl~i~~ge~v~I~GpSGsGKSTLl~~l~------~G~i~~~g~di~~~~~~~~~~~~~~~~q~--lf~~ti~~N 74 (107)
T cd00820 3 TSLHGVLVDVYGKVGVLITGDSGIGKTELALELI------KRKHRLVGDDNVEIREDSKDELIGRNPEL--GLEIRLRLN 74 (107)
T ss_pred eEEEeeEEEEcCCEEEEEEcCCCCCHHHHHHHhh------CCeEEEeeEeHHHhhhhhcCCEEEEechh--cchhhHHhh
Confidence 5899999999999999999999999999999986 89999999999999988888889999988 999999999
Q ss_pred Hhc
Q 001438 478 ILY 480 (1077)
Q Consensus 478 i~~ 480 (1077)
|.+
T Consensus 75 i~~ 77 (107)
T cd00820 75 IFL 77 (107)
T ss_pred cee
Confidence 987
|
It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural |
| >TIGR02858 spore_III_AA stage III sporulation protein AA | Back alignment and domain information |
|---|
Probab=99.58 E-value=1e-14 Score=158.01 Aligned_cols=142 Identities=19% Similarity=0.291 Sum_probs=103.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCC-HHHHhhheeEEccCCCcccccHHHHHhcCCCCCCHHH
Q 001438 411 KIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLD-LKWLRQQIGLVNQEPALFATTIRENILYGKDDATMEE 489 (1077)
Q Consensus 411 ~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~-~~~~r~~i~~v~Q~~~lf~~ti~~ni~~~~~~~~~~~ 489 (1077)
+.++|+||+|||||||+++|+|++.|.+|+|.++|+++...+ ..++...++++||+..--..++.||. +
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~~~~G~i~~~g~~v~~~d~~~ei~~~~~~~~q~~~~~r~~v~~~~----~------ 181 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILSTGISQLGLRGKKVGIVDERSEIAGCVNGVPQHDVGIRTDVLDGC----P------ 181 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccCCCCceEEECCEEeecchhHHHHHHHhcccccccccccccccccc----h------
Confidence 678999999999999999999999999999999999998765 46777778999996532222444431 0
Q ss_pred HHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCC
Q 001438 490 ITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVG 569 (1077)
Q Consensus 490 ~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~~~p~illlDEpts~lD~~~~~~i~~~l~~~~~~ 569 (1077)
++. | ...++|+ .+|+++++|||++ .+.+...++.+..|
T Consensus 182 --k~~-----------------------------~---~~~~i~~--~~P~villDE~~~------~e~~~~l~~~~~~G 219 (270)
T TIGR02858 182 --KAE-----------------------------G---MMMLIRS--MSPDVIVVDEIGR------EEDVEALLEALHAG 219 (270)
T ss_pred --HHH-----------------------------H---HHHHHHh--CCCCEEEEeCCCc------HHHHHHHHHHHhCC
Confidence 000 0 1344555 4999999999974 23344444444579
Q ss_pred CeEEEEccCchh--H------------hhcCEEEEEECCEEEEecChhHHh
Q 001438 570 RTTVVVAHRLST--I------------RNADVIAVVQGRKIVKTGSHEELI 606 (1077)
Q Consensus 570 ~t~i~vtH~~~~--~------------~~~d~i~~l~~G~i~~~g~~~~l~ 606 (1077)
.|+|++||+.+. + ..+||+++|++|+ ..|+++++.
T Consensus 220 ~~vI~ttH~~~~~~~~~r~~~~~l~~~~~~~r~i~L~~~~--~~g~~~~i~ 268 (270)
T TIGR02858 220 VSIIATAHGRDVEDLYKRPVFKELIENEAFERYVVLSRRK--GPGTVEAVY 268 (270)
T ss_pred CEEEEEechhHHHHHHhChHHHHHHhcCceEEEEEEecCC--CCCceeecc
Confidence 999999997654 3 3389999999887 667766653
|
Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation. |
| >KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.53 E-value=5.3e-14 Score=152.55 Aligned_cols=181 Identities=27% Similarity=0.424 Sum_probs=133.0
Q ss_pred EEcCCCCCcccccceeEEecCCc-----EEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHHHhhheeEE
Q 001438 389 FCYPSRPDVAIFDKFCLDIPAGK-----IVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIGLV 463 (1077)
Q Consensus 389 ~~y~~~~~~~~l~~isl~i~~g~-----~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v 463 (1077)
++||+. +..+.+..|.|+.|+ ++..+|.||.||||++++++|..+|++|. ++..+ .++|=
T Consensus 343 y~Yp~m--~k~~g~F~L~i~~GefsdSeiivmlgEngtgkTTfi~mlag~~~pd~~~------e~p~l-------nVSyk 407 (592)
T KOG0063|consen 343 YSYPKM--KKTVGDFCLCIKVGEFSDSEIIVMLGENGTGKTTFIRMLAGRLKPDEGG------EIPVL-------NVSYK 407 (592)
T ss_pred eccCcc--eeeeeeEEEEEeecccCCceeEEEEccCCcchhHHHHHHhcCCCCCccC------ccccc-------ceecc
Confidence 567754 346789999999875 68899999999999999999999998762 22222 48888
Q ss_pred ccCCC-cccccHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHHhccCCCEE
Q 001438 464 NQEPA-LFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSIL 542 (1077)
Q Consensus 464 ~Q~~~-lf~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~~~p~il 542 (1077)
||.-. =+.+|+|+-+.- +++.+..--.....+. -|-..+..+++...+||||+.||++||-++=+.++++
T Consensus 408 pqkispK~~~tvR~ll~~--------kIr~ay~~pqF~~dvm-kpL~ie~i~dqevq~lSggelQRval~KOGGKpAdvY 478 (592)
T KOG0063|consen 408 PQKISPKREGTVRQLLHT--------KIRDAYMHPQFVNDVM-KPLQIENIIDQEVQGLSGGELQRVALALCLGKPADVY 478 (592)
T ss_pred ccccCccccchHHHHHHH--------HhHhhhcCHHHHHhhh-hhhhHHHHHhHHhhcCCchhhHHHHHHHhcCCCCceE
Confidence 88743 477899886531 1111111111111111 1222334455667799999999999999999999999
Q ss_pred EEeCcCCCCCHHHHHHHHHHHHHH--hCCCeEEEEccCchhHhh-cCEEEEEEC
Q 001438 543 LLDEATSALDAESENSVQEALDRV--MVGRTTVVVAHRLSTIRN-ADVIAVVQG 593 (1077)
Q Consensus 543 llDEpts~lD~~~~~~i~~~l~~~--~~~~t~i~vtH~~~~~~~-~d~i~~l~~ 593 (1077)
+.|||.+-||.+.+..--..+++. ..++|-.+|.|++-.... |||++|.+.
T Consensus 479 liDEpsAylDSeQRi~AskvikRfilhakktafvVEhdfImaTYladrvivf~G 532 (592)
T KOG0063|consen 479 LIDEPSAYLDSEQRIIASKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVFEG 532 (592)
T ss_pred EecCchhhcChHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHhhcceeEEEec
Confidence 999999999999887777777774 468899999999887765 999988764
|
|
| >cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.51 E-value=5.5e-14 Score=146.94 Aligned_cols=138 Identities=17% Similarity=0.172 Sum_probs=97.0
Q ss_pred cccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHHHhhhee-EEccCCCcccccHH
Q 001438 397 VAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIG-LVNQEPALFATTIR 475 (1077)
Q Consensus 397 ~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~-~v~Q~~~lf~~ti~ 475 (1077)
..+.+|+++++++|++++|.||||+||||+++.+.+.. +..++| +||-.. ..-++.
T Consensus 16 ~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~~---------------------~la~~G~~vpa~~--~~l~~~ 72 (204)
T cd03282 16 NFIPNDIYLTRGSSRFHIITGPNMSGKSTYLKQIALLA---------------------IMAQIGCFVPAEY--ATLPIF 72 (204)
T ss_pred cEEEeeeEEeeCCCcEEEEECCCCCCHHHHHHHHHHHH---------------------HHHHcCCCcchhh--cCccCh
Confidence 46889999999999999999999999999999998763 222333 222111 122566
Q ss_pred HHHhcCCCCCCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHHhccCCCEEEEeCcCCCCCHHH
Q 001438 476 ENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAES 555 (1077)
Q Consensus 476 ~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~~~p~illlDEpts~lD~~~ 555 (1077)
|||...... +..+.++..++|+|+||+ ..+-++..+|+++|||||++++|+..
T Consensus 73 d~I~~~~~~--------------------------~d~~~~~~S~fs~e~~~~-~~il~~~~~~~lvllDE~~~gt~~~~ 125 (204)
T cd03282 73 NRLLSRLSN--------------------------DDSMERNLSTFASEMSET-AYILDYADGDSLVLIDELGRGTSSAD 125 (204)
T ss_pred hheeEecCC--------------------------ccccchhhhHHHHHHHHH-HHHHHhcCCCcEEEeccccCCCCHHH
Confidence 666432111 111233445799999976 45556788999999999999999976
Q ss_pred HHHH-HHHHHHHh-CCCeEEEEccCchhHhh
Q 001438 556 ENSV-QEALDRVM-VGRTTVVVAHRLSTIRN 584 (1077)
Q Consensus 556 ~~~i-~~~l~~~~-~~~t~i~vtH~~~~~~~ 584 (1077)
...+ .+.++.+. .+.++|++||+.+.++.
T Consensus 126 ~~~l~~~il~~l~~~~~~~i~~TH~~~l~~~ 156 (204)
T cd03282 126 GFAISLAILECLIKKESTVFFATHFRDIAAI 156 (204)
T ss_pred HHHHHHHHHHHHHhcCCEEEEECChHHHHHH
Confidence 5554 34444443 48999999999998765
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c |
| >cd03284 ABC_MutS1 MutS1 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.50 E-value=5.3e-14 Score=148.90 Aligned_cols=153 Identities=19% Similarity=0.240 Sum_probs=100.5
Q ss_pred ccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCC-CccEEEECCeeCCCCCHHHHhhheeEEccCCCcccc-cHH
Q 001438 398 AIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEP-LSGEILLDGNNIKGLDLKWLRQQIGLVNQEPALFAT-TIR 475 (1077)
Q Consensus 398 ~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~-~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~-ti~ 475 (1077)
.+.+|++++.++ ++++|+|||||||||+++.+.+..-. ..|. .+. ..+.+++++.| +|.. ++.
T Consensus 19 ~v~n~~~l~~~~-~~~~l~Gpn~sGKstllr~i~~~~~l~~~g~------~vp-----~~~~~i~~~~~---i~~~~~~~ 83 (216)
T cd03284 19 FVPNDTELDPER-QILLITGPNMAGKSTYLRQVALIALLAQIGS------FVP-----ASKAEIGVVDR---IFTRIGAS 83 (216)
T ss_pred eEeeeEEecCCc-eEEEEECCCCCChHHHHHHHHHHHHHhccCC------eec-----cccceecceee---EeccCCch
Confidence 477899999887 99999999999999999999764321 1121 111 01234666654 3333 555
Q ss_pred HHHhcCCCCCCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHHh--ccCCCEEEEeCc---CCC
Q 001438 476 ENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAI--VKNPSILLLDEA---TSA 550 (1077)
Q Consensus 476 ~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal--~~~p~illlDEp---ts~ 550 (1077)
||+..|.. .=...+..+++++ ..+|+++||||| |++
T Consensus 84 ~~ls~g~s---------------------------------------~f~~e~~~l~~~l~~~~~~~llllDEp~~gt~~ 124 (216)
T cd03284 84 DDLAGGRS---------------------------------------TFMVEMVETANILNNATERSLVLLDEIGRGTST 124 (216)
T ss_pred hhhccCcc---------------------------------------hHHHHHHHHHHHHHhCCCCeEEEEecCCCCCCh
Confidence 55554421 1111122334433 469999999999 999
Q ss_pred CCHHH-HHHHHHHHHHHhCCCeEEEEccCchhHhhcCEEEEEECCEEEEecChhHH
Q 001438 551 LDAES-ENSVQEALDRVMVGRTTVVVAHRLSTIRNADVIAVVQGRKIVKTGSHEEL 605 (1077)
Q Consensus 551 lD~~~-~~~i~~~l~~~~~~~t~i~vtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l 605 (1077)
+|... ...+.+.+.+. .+.|+|++||+.+....+|++..+++|++...++.+++
T Consensus 125 lD~~~~~~~il~~l~~~-~~~~vi~~TH~~~l~~l~~~~~~v~~~~~~~~~~~~~l 179 (216)
T cd03284 125 YDGLSIAWAIVEYLHEK-IGAKTLFATHYHELTELEGKLPRVKNFHVAVKEKGGGV 179 (216)
T ss_pred HHHHHHHHHHHHHHHhc-cCCcEEEEeCcHHHHHHhhcCCCeEEEEEEEEeeCCeE
Confidence 99865 23344444332 37899999999877777888878899998776655544
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam |
| >KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=99.50 E-value=7e-12 Score=141.87 Aligned_cols=64 Identities=27% Similarity=0.562 Sum_probs=56.5
Q ss_pred cccccEEEeeeeeeCCCCCcccccccceeeeeCCCEEEEECCCCCCHHHHHHHHhhccCCCCCCC
Q 001438 1013 NVEGTIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKA 1077 (1077)
Q Consensus 1013 ~~~G~I~f~nVsf~Y~~~~~~~VLk~vsl~I~~GekVaIVGrTGsGKSTLi~lL~Rfyd~~~G~i 1077 (1077)
|.+-.|+|++|++.=|++ ...+.+|+||+|+.|+.+-|+||||||||||+..|-.+|+..+|++
T Consensus 429 ~~Dn~i~~e~v~l~tPt~-g~~lie~Ls~~V~~g~~LLItG~sG~GKtSLlRvlggLWp~~~G~l 492 (659)
T KOG0060|consen 429 PADNAIEFEEVSLSTPTN-GDLLIENLSLEVPSGQNLLITGPSGCGKTSLLRVLGGLWPSTGGKL 492 (659)
T ss_pred cccceEEeeeeeecCCCC-CceeeeeeeeEecCCCeEEEECCCCCchhHHHHHHhcccccCCCeE
Confidence 344579999999999985 3345688999999999999999999999999999999999888875
|
|
| >PRK00064 recF recombination protein F; Reviewed | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.2e-12 Score=149.75 Aligned_cols=76 Identities=25% Similarity=0.333 Sum_probs=66.0
Q ss_pred CCCChHHHHHHHHHHHhc---------cCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEccCchhHhh---cC
Q 001438 519 IQLSGGQKQRIAISRAIV---------KNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRN---AD 586 (1077)
Q Consensus 519 ~~LSgGqkqri~lARal~---------~~p~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~vtH~~~~~~~---~d 586 (1077)
..+|+||+|+++||+++. .+|+|+|||||+++||+...+.+.+.+.+. +..++++||+.+.+.. .+
T Consensus 272 ~~~S~Gq~~~~~lal~la~~~~~~~~~~~~~ilLlDd~~s~LD~~~~~~l~~~l~~~--~~qv~it~~~~~~~~~~~~~~ 349 (361)
T PRK00064 272 DFGSTGQQKLLLLALKLAEAELLKEETGEAPILLLDDVASELDDGRRAALLERLKGL--GAQVFITTTDLEDLADLLENA 349 (361)
T ss_pred HhCChHHHHHHHHHHHHHHHHHHHHhhCCCCEEEEccchhhhCHHHHHHHHHHHhcc--CCEEEEEcCChhhhhhhhccC
Confidence 469999999999999885 799999999999999999999998888653 4588999998876543 46
Q ss_pred EEEEEECCEE
Q 001438 587 VIAVVQGRKI 596 (1077)
Q Consensus 587 ~i~~l~~G~i 596 (1077)
+++.+++|++
T Consensus 350 ~i~~v~~G~i 359 (361)
T PRK00064 350 KIFHVEQGKI 359 (361)
T ss_pred cEEEEeCCEE
Confidence 8999999997
|
|
| >TIGR00606 rad50 rad50 | Back alignment and domain information |
|---|
Probab=99.45 E-value=2.5e-13 Score=179.76 Aligned_cols=119 Identities=24% Similarity=0.306 Sum_probs=103.0
Q ss_pred cccccHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHH------HHHHHHHhccCCCEE
Q 001438 469 LFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQ------RIAISRAIVKNPSIL 542 (1077)
Q Consensus 469 lf~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkq------ri~lARal~~~p~il 542 (1077)
.|+||++|||.+ .++.+.+ ..+++.++..+++..+|.| +|.++.+| .||||||| |++||||++.+|++|
T Consensus 1153 ~~~~~~~~~i~~-~~~~~~~--~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~lS~Gq~~~~~~~~rlala~~~~~~~~il 1227 (1311)
T TIGR00606 1153 TYRGQDIEYIEI-RSDADEN--VSASDKRRNYNYRVVMLKG-DTALDMRG-RCSAGQKVLASLIIRLALAETFCLNCGII 1227 (1311)
T ss_pred HcCccHHHHhhc-CCCCChH--HHHHHHcCchHHHhccCCC-CeecCCCC-CCchhhhhHhhHhHHHHHHHHHhcCCCEE
Confidence 489999999999 7766655 6788888999999999999 89998776 89999999 999999999999999
Q ss_pred EEeCcCCCCCHHHHHHHHHHHHHHh------CCCeEEEEccCchhHh------hcCEEEEEE
Q 001438 543 LLDEATSALDAESENSVQEALDRVM------VGRTTVVVAHRLSTIR------NADVIAVVQ 592 (1077)
Q Consensus 543 llDEpts~lD~~~~~~i~~~l~~~~------~~~t~i~vtH~~~~~~------~~d~i~~l~ 592 (1077)
+|||||++||+.+...+.+.|..+. .|.|+|+|||+++.+. .||+.+.+.
T Consensus 1228 ~lDEPt~~lD~~~~~~l~~~l~~~~~~~~~~~~~~viiitHd~~~~~~~~~~~~~~~~~~~~ 1289 (1311)
T TIGR00606 1228 ALDEPTTNLDRENIESLAHALVEIIKSRSQQRNFQLLVITHDEDFVELLGRSEYVEKFYRLK 1289 (1311)
T ss_pred EeeCCcccCCHHHHHHHHHHHHHHHHhhhhccCCeEEEEecCHHHHHHHhhccccceeeeee
Confidence 9999999999999999988887652 3789999999999875 356666553
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.7e-13 Score=139.22 Aligned_cols=59 Identities=37% Similarity=0.665 Sum_probs=55.2
Q ss_pred cEEEeeeeeeCCCCCcccccccceeeeeCCCEEEEECCCCCCHHHHHHHHhhccCCCCCCC
Q 001438 1017 TIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKA 1077 (1077)
Q Consensus 1017 ~I~f~nVsf~Y~~~~~~~VLk~vsl~I~~GekVaIVGrTGsGKSTLi~lL~Rfyd~~~G~i 1077 (1077)
.|+++||+-+||++ +.+|+||||+|++||.|||+||||||||||+..|-|+.||++|+|
T Consensus 3 ~i~~~nl~k~yp~~--~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i 61 (258)
T COG3638 3 MIEVKNLSKTYPGG--HQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEI 61 (258)
T ss_pred eEEEeeeeeecCCC--ceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceE
Confidence 48999999999854 468999999999999999999999999999999999999999975
|
|
| >PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression [] | Back alignment and domain information |
|---|
Probab=99.37 E-value=8.4e-13 Score=141.34 Aligned_cols=72 Identities=26% Similarity=0.424 Sum_probs=59.0
Q ss_pred CCChHHHHHHHHHHHh----ccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEccCchhHhhcCEEEEE
Q 001438 520 QLSGGQKQRIAISRAI----VKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRNADVIAVV 591 (1077)
Q Consensus 520 ~LSgGqkqri~lARal----~~~p~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~vtH~~~~~~~~d~i~~l 591 (1077)
.||||||.+++||--+ +.++++++|||+.++||....+.+.+.|++..++.-+|++||+......||+.+.+
T Consensus 136 ~lSgGEk~~~~Lal~lA~~~~~~~p~~ilDEvd~~LD~~~~~~l~~~l~~~~~~~Q~ii~Th~~~~~~~a~~~~~v 211 (220)
T PF02463_consen 136 FLSGGEKSLVALALLLALQRYKPSPFLILDEVDAALDEQNRKRLADLLKELSKQSQFIITTHNPEMFEDADKLIGV 211 (220)
T ss_dssp GS-HHHHHHHHHHHHHHHHTCS--SEEEEESTTTTS-HHHHHHHHHHHHHHTTTSEEEEE-S-HHHHTT-SEEEEE
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 8999999999998443 56789999999999999999999999999988788899999999999999988765
|
The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A .... |
| >COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.35 E-value=7.7e-13 Score=137.19 Aligned_cols=58 Identities=41% Similarity=0.686 Sum_probs=54.4
Q ss_pred cEEEeeeeeeCCCCCcccccccceeeeeCCCEEEEECCCCCCHHHHHHHHhhccCCCCCCC
Q 001438 1017 TIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKA 1077 (1077)
Q Consensus 1017 ~I~f~nVsf~Y~~~~~~~VLk~vsl~I~~GekVaIVGrTGsGKSTLi~lL~Rfyd~~~G~i 1077 (1077)
.+++++|+.+|++ ..||+|+||+|++||.|+||||||||||||++++.+|..|++|+|
T Consensus 3 ~l~i~~v~~~f~~---~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V 60 (248)
T COG1116 3 LLEIEGVSKSFGG---VEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEV 60 (248)
T ss_pred eEEEEeeEEEeCc---eEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceE
Confidence 4889999999975 468999999999999999999999999999999999999999975
|
|
| >cd03289 ABCC_CFTR2 The CFTR subfamily domain 2 | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.2e-12 Score=143.77 Aligned_cols=60 Identities=28% Similarity=0.617 Sum_probs=54.3
Q ss_pred ccEEEeeeeeeCCCCCcccccccceeeeeCCCEEEEECCCCCCHHHHHHHHhhccCCCCCCC
Q 001438 1016 GTIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKA 1077 (1077)
Q Consensus 1016 G~I~f~nVsf~Y~~~~~~~VLk~vsl~I~~GekVaIVGrTGsGKSTLi~lL~Rfyd~~~G~i 1077 (1077)
|+|+|+||+++|++. ..++|+|+||+|++||++|||||||||||||+++|+|+++ .+|+|
T Consensus 1 g~i~~~nls~~~~~~-~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~~G~I 60 (275)
T cd03289 1 GQMTVKDLTAKYTEG-GNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGDI 60 (275)
T ss_pred CeEEEEEEEEEeCCC-CCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEE
Confidence 689999999999743 2358999999999999999999999999999999999998 67875
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >PRK07721 fliI flagellum-specific ATP synthase; Validated | Back alignment and domain information |
|---|
Probab=99.32 E-value=3e-11 Score=139.47 Aligned_cols=175 Identities=22% Similarity=0.327 Sum_probs=115.4
Q ss_pred cccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCe---eCCC-----CCHHHHhhheeEEcc--C
Q 001438 397 VAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGN---NIKG-----LDLKWLRQQIGLVNQ--E 466 (1077)
Q Consensus 397 ~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~---~~~~-----~~~~~~r~~i~~v~Q--~ 466 (1077)
..+++++ |++.+|++++|+|+||+|||||+++|+|+++|+.|.|.+.|+ ++.+ ++...+++.+.++.+ +
T Consensus 146 ~~vid~l-~~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~~~gvI~~~Gerg~ev~e~~~~~l~~~~l~r~v~vv~~~~~ 224 (438)
T PRK07721 146 VRAIDSL-LTVGKGQRVGIFAGSGVGKSTLMGMIARNTSADLNVIALIGERGREVREFIERDLGPEGLKRSIVVVATSDQ 224 (438)
T ss_pred hhhhhee-eeecCCcEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEEecCCccHHHHHHhhcChhhhcCeEEEEECCCC
Confidence 4579999 999999999999999999999999999999999999999554 4442 344557788998864 3
Q ss_pred CCcccccHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCCh-HHHHH-HHHHHHhccCCCEEEE
Q 001438 467 PALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSG-GQKQR-IAISRAIVKNPSILLL 544 (1077)
Q Consensus 467 ~~lf~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSg-Gqkqr-i~lARal~~~p~illl 544 (1077)
|.+.. ......++..+ +++.. .|.|-.+-- .+++- -|-|| |+++ ..+|+
T Consensus 225 ~~~~r---------------~~~~~~a~~iA---Eyfr~--~g~~Vll~~--Dsltr~A~A~rEisl~---~ge~P---- 275 (438)
T PRK07721 225 PALMR---------------IKGAYTATAIA---EYFRD--QGLNVMLMM--DSVTRVAMAQREIGLA---VGEPP---- 275 (438)
T ss_pred CHHHH---------------HHHHHHHHHHH---HHHHH--CCCcEEEEE--eChHHHHHHHHHHHHh---cCCCC----
Confidence 32110 11111122222 11211 122211100 01110 01111 1111 12222
Q ss_pred eCcCCCCCHHHHHHHHHHHHHHh---CCC-----eEEEEccCchhHhhcCEEEEEECCEEEEecChhH
Q 001438 545 DEATSALDAESENSVQEALDRVM---VGR-----TTVVVAHRLSTIRNADVIAVVQGRKIVKTGSHEE 604 (1077)
Q Consensus 545 DEpts~lD~~~~~~i~~~l~~~~---~~~-----t~i~vtH~~~~~~~~d~i~~l~~G~i~~~g~~~~ 604 (1077)
.|+|+|+.....+.+.+++.. +|. |+++.+|+++. ..||++.++.||+|+.+++..+
T Consensus 276 --~~~G~dp~~~~~l~~ller~~~~~~GsIT~~~TVlv~~hdm~e-~i~d~v~~i~dG~Ivls~~la~ 340 (438)
T PRK07721 276 --TTKGYTPSVFAILPKLLERTGTNASGSITAFYTVLVDGDDMNE-PIADTVRGILDGHFVLDRQLAN 340 (438)
T ss_pred --ccccCCHHHHHHHHHHHHHhcCCCCCCeeeEEEEEEECCCCCc-hhhhhEEEecCEEEEEeccHHH
Confidence 478999999999999888765 465 99999999995 6799999999999999887654
|
|
| >PRK14257 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=2.4e-12 Score=145.04 Aligned_cols=65 Identities=32% Similarity=0.537 Sum_probs=57.6
Q ss_pred ccccccEEEeeeeeeCCCCCcccccccceeeeeCCCEEEEECCCCCCHHHHHHHHhhccC-----CCCCCC
Q 001438 1012 TNVEGTIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYD-----PTAGKA 1077 (1077)
Q Consensus 1012 ~~~~G~I~f~nVsf~Y~~~~~~~VLk~vsl~I~~GekVaIVGrTGsGKSTLi~lL~Rfyd-----~~~G~i 1077 (1077)
|+..|.|+|+||+++|++. ..++|+|+||+|++||++|||||||||||||+++|+|+++ |.+|+|
T Consensus 75 ~~~~~~i~~~nls~~y~~~-~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I 144 (329)
T PRK14257 75 FNHANVFEIRNFNFWYMNR-TKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEI 144 (329)
T ss_pred CCcCceEEEEeeEEEecCC-CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEE
Confidence 5677899999999999743 2458999999999999999999999999999999999997 457864
|
|
| >cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.29 E-value=2.5e-11 Score=128.29 Aligned_cols=134 Identities=15% Similarity=0.210 Sum_probs=89.9
Q ss_pred cccceeEEecCCcEEEEEcCCCCcHHHHHHHHhc--ccCCCccEEEECCeeCCCCCHHHHhhheeEEccCCCccc--ccH
Q 001438 399 IFDKFCLDIPAGKIVALVGGSGSGKSTVISLIER--FYEPLSGEILLDGNNIKGLDLKWLRQQIGLVNQEPALFA--TTI 474 (1077)
Q Consensus 399 ~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g--~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~--~ti 474 (1077)
+-+|++++=..+.+++|+||||+|||||++.+.. .+ +..|...... ..+++|..|...-++ .++
T Consensus 18 vpnd~~l~~~~~~~~~itGpNg~GKStlLk~i~~~~~l-a~~G~~v~a~-----------~~~~~~~d~i~~~l~~~~si 85 (213)
T cd03281 18 VPNDTEIGGGGPSIMVITGPNSSGKSVYLKQVALIVFL-AHIGSFVPAD-----------SATIGLVDKIFTRMSSRESV 85 (213)
T ss_pred EcceEEecCCCceEEEEECCCCCChHHHHHHHHHHHHH-HhCCCeeEcC-----------CcEEeeeeeeeeeeCCccCh
Confidence 4455555322237999999999999999999983 33 5566654432 124777777543221 122
Q ss_pred HHHHhcCCCCCCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHHhccCCCEEEEeCcCCCCCHH
Q 001438 475 RENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAE 554 (1077)
Q Consensus 475 ~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~~~p~illlDEpts~lD~~ 554 (1077)
.+++ -|. .-+-||+++|++++.+|+++|||||++++|+.
T Consensus 86 ~~~~--------------------------------S~f---------~~el~~l~~~l~~~~~~slvllDE~~~gtd~~ 124 (213)
T cd03281 86 SSGQ--------------------------------SAF---------MIDLYQVSKALRLATRRSLVLIDEFGKGTDTE 124 (213)
T ss_pred hhcc--------------------------------chH---------HHHHHHHHHHHHhCCCCcEEEeccccCCCCHH
Confidence 2211 000 23458999999999999999999999999997
Q ss_pred HH-HHHHHHHHHHhC----CCeEEEEccCchhHhhc
Q 001438 555 SE-NSVQEALDRVMV----GRTTVVVAHRLSTIRNA 585 (1077)
Q Consensus 555 ~~-~~i~~~l~~~~~----~~t~i~vtH~~~~~~~~ 585 (1077)
.. ......++.+.+ +.++|++||+.+.++..
T Consensus 125 ~~~~~~~ail~~l~~~~~~~~~vli~TH~~~l~~~~ 160 (213)
T cd03281 125 DGAGLLIATIEHLLKRGPECPRVIVSTHFHELFNRS 160 (213)
T ss_pred HHHHHHHHHHHHHHhcCCCCcEEEEEcChHHHHHhh
Confidence 54 444556666532 24899999999987654
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c |
| >PHA02562 46 endonuclease subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=4.1e-12 Score=155.84 Aligned_cols=91 Identities=26% Similarity=0.421 Sum_probs=81.5
Q ss_pred cCccchhhhhcCCC------CCCChHHHHHHHHHHHhc----------cCCCEEEEeCcC-CCCCHHHHHHHHHHHHHHh
Q 001438 505 NLPERFETQVGERG------IQLSGGQKQRIAISRAIV----------KNPSILLLDEAT-SALDAESENSVQEALDRVM 567 (1077)
Q Consensus 505 ~l~~g~~t~~~~~g------~~LSgGqkqri~lARal~----------~~p~illlDEpt-s~lD~~~~~~i~~~l~~~~ 567 (1077)
.+|+++++.+++.| .+||||||||++||||++ .+|+++|||||| ++||+.+...+.+.|.++
T Consensus 447 ~~~~~~~~~~~~~g~~~~~~~~lS~Ge~~r~~la~~l~~~~~~~~~~~~~~~~lilDEp~~~~ld~~~~~~~~~~l~~~- 525 (562)
T PHA02562 447 TLDEEFNETIKSRGREDFSYASFSQGEKARIDLALLFTWRDVASKVSGVDTNLLILDEVFDGALDAEGTKALLSILDSL- 525 (562)
T ss_pred EechhhhhHHhcCCCCccChhhcChhHHHHHHHHHHHHHHHHHHHhcCCCcCeEEEecccCcccchhHHHHHHHHHHhC-
Confidence 46888888888877 689999999999999987 599999999998 789999999999999988
Q ss_pred CCCeEEEEccCchhHhhcCEEEEEEC-CEE
Q 001438 568 VGRTTVVVAHRLSTIRNADVIAVVQG-RKI 596 (1077)
Q Consensus 568 ~~~t~i~vtH~~~~~~~~d~i~~l~~-G~i 596 (1077)
++.|+|+|||+.+....||++++|++ |+.
T Consensus 526 ~~~~iiiish~~~~~~~~d~~~~l~~~~~~ 555 (562)
T PHA02562 526 KDTNVFVISHKDHDPQKFDRHLKMEKVGRF 555 (562)
T ss_pred CCCeEEEEECchhchhhhhcEEEEEEECCe
Confidence 78999999999888888999999986 543
|
|
| >COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.27 E-value=4.7e-12 Score=130.06 Aligned_cols=61 Identities=26% Similarity=0.526 Sum_probs=54.9
Q ss_pred cEEEeeeeeeCCCCCc-ccccccceeeeeCCCEEEEECCCCCCHHHHHHHHhhccCCCCCCC
Q 001438 1017 TIELRGVHFSYPSRPE-VVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKA 1077 (1077)
Q Consensus 1017 ~I~f~nVsf~Y~~~~~-~~VLk~vsl~I~~GekVaIVGrTGsGKSTLi~lL~Rfyd~~~G~i 1077 (1077)
.++.+|+++.|+.+.. -++||||||+|.+||++||||+||||||||.++|.++-.|+.|+|
T Consensus 3 ~l~v~nl~~~y~~~~~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I 64 (252)
T COG1124 3 LLSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSI 64 (252)
T ss_pred eEEEeceEEEecCCcchhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceE
Confidence 4789999999975431 148999999999999999999999999999999999999999986
|
|
| >smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family | Back alignment and domain information |
|---|
Probab=99.27 E-value=4.9e-12 Score=131.09 Aligned_cols=80 Identities=18% Similarity=0.197 Sum_probs=56.0
Q ss_pred CCCCCCChHHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHH-HHHHHHh--CCCeEEEEccCchhHhhcCEEEEEE
Q 001438 516 ERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQ-EALDRVM--VGRTTVVVAHRLSTIRNADVIAVVQ 592 (1077)
Q Consensus 516 ~~g~~LSgGqkqri~lARal~~~p~illlDEpts~lD~~~~~~i~-~~l~~~~--~~~t~i~vtH~~~~~~~~d~i~~l~ 592 (1077)
++..++|+|++|...+.+. +.+|+++|+|||++++|+.....+. ..++.+. .+.++|++||+.+..+.+|+---++
T Consensus 57 ~~~s~fs~~~~~l~~~l~~-~~~~~llllDEp~~g~d~~~~~~~~~~~l~~l~~~~~~~iii~TH~~~l~~~~~~~~~v~ 135 (185)
T smart00534 57 QGLSTFMVEMKETANILKN-ATENSLVLLDELGRGTSTYDGVAIAAAVLEYLLEKIGALTLFATHYHELTKLADEHPGVR 135 (185)
T ss_pred ccccHHHHHHHHHHHHHHh-CCCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHHHhhcCccce
Confidence 3445788888874443332 3499999999999999999776664 4455543 3789999999998666677533344
Q ss_pred CCEE
Q 001438 593 GRKI 596 (1077)
Q Consensus 593 ~G~i 596 (1077)
+++.
T Consensus 136 ~~~~ 139 (185)
T smart00534 136 NLHM 139 (185)
T ss_pred EEEE
Confidence 4443
|
|
| >cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos) | Back alignment and domain information |
|---|
Probab=99.26 E-value=4.2e-12 Score=128.78 Aligned_cols=57 Identities=33% Similarity=0.666 Sum_probs=53.1
Q ss_pred EEEeeeeeeCCCCCcccccccceeeeeCCCEEEEECCCCCCHHHHHHHHhhccCCCCCCC
Q 001438 1018 IELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKA 1077 (1077)
Q Consensus 1018 I~f~nVsf~Y~~~~~~~VLk~vsl~I~~GekVaIVGrTGsGKSTLi~lL~Rfyd~~~G~i 1077 (1077)
|+++||+++|+++ ++|+|+||+|+|||.+||+|++|||||||+++|.++++|++|+|
T Consensus 1 l~~~~l~~~~~~~---~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v 57 (163)
T cd03216 1 LELRGITKRFGGV---KALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEI 57 (163)
T ss_pred CEEEEEEEEECCe---EEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEE
Confidence 5799999999753 48999999999999999999999999999999999999999975
|
The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. |
| >cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1) | Back alignment and domain information |
|---|
Probab=99.26 E-value=6.9e-12 Score=132.84 Aligned_cols=65 Identities=31% Similarity=0.605 Sum_probs=58.2
Q ss_pred ccccccEEEeeeeeeCCCCCcccccccceeeeeCCCEEEEECCCCCCHHHHHHHHhhccCCCCCCC
Q 001438 1012 TNVEGTIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKA 1077 (1077)
Q Consensus 1012 ~~~~G~I~f~nVsf~Y~~~~~~~VLk~vsl~I~~GekVaIVGrTGsGKSTLi~lL~Rfyd~~~G~i 1077 (1077)
||..|.|+++|++++|+.. ..++|+|+||+|++||.+||+|++|||||||+++|.++++|++|+|
T Consensus 1 ~~~~~~l~~~~l~~~~~~~-~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i 65 (207)
T cd03369 1 WPEHGEIEVENLSVRYAPD-LPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKI 65 (207)
T ss_pred CCCCCeEEEEEEEEEeCCC-CcccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeE
Confidence 4556889999999999743 2358999999999999999999999999999999999999999975
|
NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. |
| >KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.26 E-value=7.2e-12 Score=136.23 Aligned_cols=172 Identities=25% Similarity=0.365 Sum_probs=117.6
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEE-----------ECCeeCCCC----CHHHHhh--heeEEccCCCcc
Q 001438 408 PAGKIVALVGGSGSGKSTVISLIERFYEPLSGEIL-----------LDGNNIKGL----DLKWLRQ--QIGLVNQEPALF 470 (1077)
Q Consensus 408 ~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~-----------~~g~~~~~~----~~~~~r~--~i~~v~Q~~~lf 470 (1077)
+||+..++||.||-||||-++.++|-.+|.-|.-. +.|..+.++ ..+.++. +.-||.|-|-.-
T Consensus 98 rpg~vlglvgtngigkstAlkilagk~kpnlg~~~~pp~w~~il~~frgselq~yftk~le~~lk~~~kpQyvd~ipr~~ 177 (592)
T KOG0063|consen 98 RPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRYDNPPDWQEILTYFRGSELQNYFTKILEDNLKAIIKPQYVDQIPRAV 177 (592)
T ss_pred CcchhccccccCcccHHHHHHHHhCCCCCCCCCCCCCcchHHHhhhhhhHHHhhhhhhhccccccCcCChHHHHHHHHHH
Confidence 58999999999999999999999999999877531 112222111 1111111 123444444444
Q ss_pred cccHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHHhccCCCEEEEeCcCCC
Q 001438 471 ATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSA 550 (1077)
Q Consensus 471 ~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~~~p~illlDEpts~ 550 (1077)
.+++.+++.--.+..+.++ +|...++ +........+||||+-||.+||.+.++++|++++|||.|-
T Consensus 178 k~~v~~~l~~~~~r~~~~~---~~~~~~L-----------~~~~~re~~~lsggelqrfaia~~~vq~advyMFDEpSsY 243 (592)
T KOG0063|consen 178 KGTVGSLLDRKDERDNKEE---VCDQLDL-----------NNLLDREVEQLSGGELQRFAIAMVCVQKADVYMFDEPSSY 243 (592)
T ss_pred HHHHHHHHHHHhhcccHHH---HHHHHHH-----------hhHHHhhhhhcccchhhhhhhhhhhhhhcceeEecCCccc
Confidence 5566666532211112222 2222221 1112223457999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHh-CCCeEEEEccCchhHhh-cCEEEEEEC
Q 001438 551 LDAESENSVQEALDRVM-VGRTTVVVAHRLSTIRN-ADVIAVVQG 593 (1077)
Q Consensus 551 lD~~~~~~i~~~l~~~~-~~~t~i~vtH~~~~~~~-~d~i~~l~~ 593 (1077)
||.+.+-.--..|+.+. .++=+|+|.|+++.+.. .|-|.++-.
T Consensus 244 LDVKQRLkaA~~IRsl~~p~~YiIVVEHDLsVLDylSDFiCcLYG 288 (592)
T KOG0063|consen 244 LDVKQRLKAAITIRSLINPDRYIIVVEHDLSVLDYLSDFICCLYG 288 (592)
T ss_pred chHHHhhhHHHHHHHhhCCCCeEEEEEeechHHHhhhcceeEEec
Confidence 99998888877887764 58899999999999986 888888754
|
|
| >COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.26 E-value=5.6e-12 Score=133.29 Aligned_cols=60 Identities=35% Similarity=0.568 Sum_probs=55.2
Q ss_pred EEEeeeeeeCCCC--CcccccccceeeeeCCCEEEEECCCCCCHHHHHHHHhhccCCCCCCC
Q 001438 1018 IELRGVHFSYPSR--PEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKA 1077 (1077)
Q Consensus 1018 I~f~nVsf~Y~~~--~~~~VLk~vsl~I~~GekVaIVGrTGsGKSTLi~lL~Rfyd~~~G~i 1077 (1077)
|+|+||+..|+.. +..++|+||||+|++||..||+|+||||||||+.++-|+-.|++|+|
T Consensus 2 I~l~~vsK~~~~~~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v 63 (339)
T COG1135 2 IELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSV 63 (339)
T ss_pred eEEEeeeeeeccCCCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceE
Confidence 8999999999862 23468999999999999999999999999999999999999999986
|
|
| >COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.26 E-value=5.1e-12 Score=133.10 Aligned_cols=58 Identities=38% Similarity=0.688 Sum_probs=54.5
Q ss_pred cEEEeeeeeeCCCCCcccccccceeeeeCCCEEEEECCCCCCHHHHHHHHhhccCCCCCCC
Q 001438 1017 TIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKA 1077 (1077)
Q Consensus 1017 ~I~f~nVsf~Y~~~~~~~VLk~vsl~I~~GekVaIVGrTGsGKSTLi~lL~Rfyd~~~G~i 1077 (1077)
.|+++|++|+|..+ +||+||||+|++||.+|||||.|||||||+.+++++..|.+|+|
T Consensus 4 ~i~v~nl~v~y~~~---~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i 61 (254)
T COG1121 4 MIEVENLTVSYGNR---PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEI 61 (254)
T ss_pred EEEEeeeEEEECCE---eeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceE
Confidence 59999999999754 38999999999999999999999999999999999999999986
|
|
| >cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome | Back alignment and domain information |
|---|
Probab=99.25 E-value=6.6e-12 Score=127.72 Aligned_cols=58 Identities=26% Similarity=0.587 Sum_probs=53.3
Q ss_pred EEEeeeeeeCCCCCcccccccceeeeeCCCEEEEECCCCCCHHHHHHHHhhccCCCCCCC
Q 001438 1018 IELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKA 1077 (1077)
Q Consensus 1018 I~f~nVsf~Y~~~~~~~VLk~vsl~I~~GekVaIVGrTGsGKSTLi~lL~Rfyd~~~G~i 1077 (1077)
|+++||+++|+++ .++|+|+||+|++||++||+|++|||||||+++|.++++|++|+|
T Consensus 1 i~~~~~~~~~~~~--~~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i 58 (166)
T cd03223 1 IELENLSLATPDG--RVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRI 58 (166)
T ss_pred CEEEEEEEEcCCC--CeeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceE
Confidence 5799999999743 347999999999999999999999999999999999999999975
|
The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt |
| >PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=6.8e-12 Score=139.49 Aligned_cols=61 Identities=38% Similarity=0.590 Sum_probs=55.0
Q ss_pred cEEEeeeeeeCCCCC--cccccccceeeeeCCCEEEEECCCCCCHHHHHHHHhhccCCCCCCC
Q 001438 1017 TIELRGVHFSYPSRP--EVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKA 1077 (1077)
Q Consensus 1017 ~I~f~nVsf~Y~~~~--~~~VLk~vsl~I~~GekVaIVGrTGsGKSTLi~lL~Rfyd~~~G~i 1077 (1077)
.|+++||+++|++++ ..++|+||||+|++||++||+|++|||||||+++|.++++|++|+|
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i 64 (286)
T PRK13646 2 TIRFDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTV 64 (286)
T ss_pred EEEEEEEEEEECCCCccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEE
Confidence 389999999997432 2358999999999999999999999999999999999999999975
|
|
| >COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=99.24 E-value=4.9e-12 Score=121.53 Aligned_cols=61 Identities=36% Similarity=0.596 Sum_probs=54.1
Q ss_pred cEEEeeeeeeCCCCC-cccccccceeeeeCCCEEEEECCCCCCHHHHHHHHhhccCCCCCCC
Q 001438 1017 TIELRGVHFSYPSRP-EVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKA 1077 (1077)
Q Consensus 1017 ~I~f~nVsf~Y~~~~-~~~VLk~vsl~I~~GekVaIVGrTGsGKSTLi~lL~Rfyd~~~G~i 1077 (1077)
-|+.++++..-++.. +..|||||+|.|++||+||||||||||||||+.+|.++-+|++|+|
T Consensus 6 ii~~~~l~ktvg~~~~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~ssGeV 67 (228)
T COG4181 6 IIEVHHLSKTVGQGEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEV 67 (228)
T ss_pred eeehhhhhhhhcCCCcceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCCCCCceE
Confidence 478888888776432 3469999999999999999999999999999999999999999986
|
|
| >COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.24 E-value=8.3e-12 Score=129.65 Aligned_cols=60 Identities=45% Similarity=0.640 Sum_probs=53.9
Q ss_pred EEEeeeeeeCCCCC-cccccccceeeeeCCCEEEEECCCCCCHHHHHHHHhhccCCCCCCC
Q 001438 1018 IELRGVHFSYPSRP-EVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKA 1077 (1077)
Q Consensus 1018 I~f~nVsf~Y~~~~-~~~VLk~vsl~I~~GekVaIVGrTGsGKSTLi~lL~Rfyd~~~G~i 1077 (1077)
|+++||+-.|.... ..+||+|+||+|++||.|||+||||||||||+++|-.+-.|++|+|
T Consensus 2 i~~~~v~k~y~~~~~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v 62 (226)
T COG1136 2 IELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEV 62 (226)
T ss_pred cEEeeeEEEeccCCcceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceE
Confidence 67899999996432 2468999999999999999999999999999999999999999974
|
|
| >cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules | Back alignment and domain information |
|---|
Probab=99.24 E-value=1e-11 Score=133.48 Aligned_cols=65 Identities=40% Similarity=0.876 Sum_probs=58.4
Q ss_pred cccccEEEeeeeeeCCCCCcccccccceeeeeCCCEEEEECCCCCCHHHHHHHHhhccCCCCCCC
Q 001438 1013 NVEGTIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKA 1077 (1077)
Q Consensus 1013 ~~~G~I~f~nVsf~Y~~~~~~~VLk~vsl~I~~GekVaIVGrTGsGKSTLi~lL~Rfyd~~~G~i 1077 (1077)
...|.|+++|++++|+.+...++|+|+||+|++||.+||+||+|||||||+++|.++++|++|+|
T Consensus 7 ~~~~~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i 71 (226)
T cd03248 7 HLKGIVKFQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQV 71 (226)
T ss_pred CcCceEEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEE
Confidence 45688999999999975433358999999999999999999999999999999999999999975
|
Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. |
| >cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters | Back alignment and domain information |
|---|
Probab=99.24 E-value=6.8e-12 Score=132.07 Aligned_cols=61 Identities=28% Similarity=0.487 Sum_probs=55.1
Q ss_pred cEEEeeeeeeCCCC-CcccccccceeeeeCCCEEEEECCCCCCHHHHHHHHhhccC---CCCCCC
Q 001438 1017 TIELRGVHFSYPSR-PEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYD---PTAGKA 1077 (1077)
Q Consensus 1017 ~I~f~nVsf~Y~~~-~~~~VLk~vsl~I~~GekVaIVGrTGsGKSTLi~lL~Rfyd---~~~G~i 1077 (1077)
.+.++||+|.||.+ ...++|+|+||+|++||.+||+|++|||||||+++|.++++ |++|+|
T Consensus 3 ~~~~~~~~~~~~~~~~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i 67 (202)
T cd03233 3 TLSWRNISFTTGKGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDI 67 (202)
T ss_pred eEEEEccEEEeccCCCCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEE
Confidence 36799999999853 34578999999999999999999999999999999999999 889975
|
PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.23 E-value=8.7e-12 Score=140.17 Aligned_cols=61 Identities=20% Similarity=0.393 Sum_probs=55.3
Q ss_pred cEEEeeeeeeCCCCC--cccccccceeeeeCCCEEEEECCCCCCHHHHHHHHhhccCCCCCCC
Q 001438 1017 TIELRGVHFSYPSRP--EVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKA 1077 (1077)
Q Consensus 1017 ~I~f~nVsf~Y~~~~--~~~VLk~vsl~I~~GekVaIVGrTGsGKSTLi~lL~Rfyd~~~G~i 1077 (1077)
-|+++||+|+|++.. ..++|+|+||+|++||.+||+|++|||||||+++|.++++|++|+|
T Consensus 21 ~l~~~nl~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I 83 (320)
T PRK13631 21 ILRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTI 83 (320)
T ss_pred eEEEEeEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeE
Confidence 589999999997431 2358999999999999999999999999999999999999999975
|
|
| >PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.23 E-value=1e-11 Score=137.63 Aligned_cols=61 Identities=30% Similarity=0.595 Sum_probs=54.9
Q ss_pred cEEEeeeeeeCCCCCcccccccceeeeeCCCEEEEECCCCCCHHHHHHHHhhccCCCCCCC
Q 001438 1017 TIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKA 1077 (1077)
Q Consensus 1017 ~I~f~nVsf~Y~~~~~~~VLk~vsl~I~~GekVaIVGrTGsGKSTLi~lL~Rfyd~~~G~i 1077 (1077)
-|+++||+++|+.....++|+|+||+|++||.+||+|++|||||||+++|.++++|++|+|
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i 64 (279)
T PRK13650 4 IIEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQI 64 (279)
T ss_pred eEEEEeEEEEcCCCCcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEE
Confidence 4899999999974322358999999999999999999999999999999999999999975
|
|
| >TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein | Back alignment and domain information |
|---|
Probab=99.23 E-value=8.8e-12 Score=133.00 Aligned_cols=59 Identities=39% Similarity=0.629 Sum_probs=53.8
Q ss_pred EEEeeeeeeCCCCCcccccccceeeeeCCCEEEEECCCCCCHHHHHHHHhhccCCCCCCC
Q 001438 1018 IELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKA 1077 (1077)
Q Consensus 1018 I~f~nVsf~Y~~~~~~~VLk~vsl~I~~GekVaIVGrTGsGKSTLi~lL~Rfyd~~~G~i 1077 (1077)
|+++||+++|++. ..++|+|+||+|++||.+||+||+|||||||+++|.++++|++|+|
T Consensus 2 l~~~~l~~~~~~~-~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i 60 (216)
T TIGR00960 2 IRFEQVSKAYPGG-HQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKI 60 (216)
T ss_pred eEEEEEEEEecCC-CeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEE
Confidence 7899999999643 2358999999999999999999999999999999999999999975
|
|
| >cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.1e-11 Score=132.51 Aligned_cols=60 Identities=25% Similarity=0.470 Sum_probs=54.2
Q ss_pred EEEeeeeeeCCCCCc-ccccccceeeeeCCCEEEEECCCCCCHHHHHHHHhhccCCCCCCC
Q 001438 1018 IELRGVHFSYPSRPE-VVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKA 1077 (1077)
Q Consensus 1018 I~f~nVsf~Y~~~~~-~~VLk~vsl~I~~GekVaIVGrTGsGKSTLi~lL~Rfyd~~~G~i 1077 (1077)
|+++||+++|+.+.. .++|+|+||+|++||.+||+|++|||||||+++|.++++|++|+|
T Consensus 2 l~~~~v~~~~~~~~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i 62 (218)
T cd03266 2 ITADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFA 62 (218)
T ss_pred eEEEEEEEecCCCCccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceE
Confidence 789999999975321 258999999999999999999999999999999999999999975
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein. |
| >cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.2e-11 Score=132.49 Aligned_cols=61 Identities=28% Similarity=0.634 Sum_probs=55.8
Q ss_pred ccEEEeeeeeeCCCCCcccccccceeeeeCCCEEEEECCCCCCHHHHHHHHhhccCCCCCCC
Q 001438 1016 GTIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKA 1077 (1077)
Q Consensus 1016 G~I~f~nVsf~Y~~~~~~~VLk~vsl~I~~GekVaIVGrTGsGKSTLi~lL~Rfyd~~~G~i 1077 (1077)
|+|+++|++++|+.. ..++|+|+||+|++||.+||+||+|||||||+++|.+++.|++|+|
T Consensus 1 ~~l~~~~l~~~~~~~-~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i 61 (221)
T cd03244 1 GDIEFKNVSLRYRPN-LPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSI 61 (221)
T ss_pred CcEEEEEEEEecCCC-CcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEE
Confidence 679999999999743 2358999999999999999999999999999999999999999975
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.2e-11 Score=137.40 Aligned_cols=60 Identities=28% Similarity=0.553 Sum_probs=54.5
Q ss_pred EEEeeeeeeCCCCC--cccccccceeeeeCCCEEEEECCCCCCHHHHHHHHhhccCCCCCCC
Q 001438 1018 IELRGVHFSYPSRP--EVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKA 1077 (1077)
Q Consensus 1018 I~f~nVsf~Y~~~~--~~~VLk~vsl~I~~GekVaIVGrTGsGKSTLi~lL~Rfyd~~~G~i 1077 (1077)
|+++||+++|++.. ..++|+||||+|++||.+|||||+|||||||+.+|.++++|++|+|
T Consensus 3 l~~~~l~~~y~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i 64 (287)
T PRK13637 3 IKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKI 64 (287)
T ss_pred EEEEEEEEECCCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEE
Confidence 78999999997432 1358999999999999999999999999999999999999999975
|
|
| >cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth | Back alignment and domain information |
|---|
Probab=99.22 E-value=1e-11 Score=123.04 Aligned_cols=57 Identities=37% Similarity=0.684 Sum_probs=52.8
Q ss_pred EEEeeeeeeCCCCCcccccccceeeeeCCCEEEEECCCCCCHHHHHHHHhhccCCCCCCC
Q 001438 1018 IELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKA 1077 (1077)
Q Consensus 1018 I~f~nVsf~Y~~~~~~~VLk~vsl~I~~GekVaIVGrTGsGKSTLi~lL~Rfyd~~~G~i 1077 (1077)
++++|++++|++. ++|+|+||++++||.++|+||+|||||||+++|.++++|++|+|
T Consensus 1 l~~~~l~~~~~~~---~~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i 57 (144)
T cd03221 1 IELENLSKTYGGK---LLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIV 57 (144)
T ss_pred CEEEEEEEEECCc---eEEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCceEE
Confidence 5789999999643 47999999999999999999999999999999999999999975
|
EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. |
| >cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE) | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.3e-11 Score=133.02 Aligned_cols=60 Identities=35% Similarity=0.685 Sum_probs=54.0
Q ss_pred EEEeeeeeeCCCCC-cccccccceeeeeCCCEEEEECCCCCCHHHHHHHHhhccCCCCCCC
Q 001438 1018 IELRGVHFSYPSRP-EVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKA 1077 (1077)
Q Consensus 1018 I~f~nVsf~Y~~~~-~~~VLk~vsl~I~~GekVaIVGrTGsGKSTLi~lL~Rfyd~~~G~i 1077 (1077)
|+++||+++|+.+. ..++|+|+||+|++||.+||+||+|||||||+++|.++++|++|+|
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i 62 (228)
T cd03257 2 LEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSI 62 (228)
T ss_pred eEEEeeeEeccCCCcceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceE
Confidence 78999999996431 1258999999999999999999999999999999999999999975
|
The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. |
| >PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.2e-11 Score=133.47 Aligned_cols=61 Identities=30% Similarity=0.515 Sum_probs=54.9
Q ss_pred cEEEeeeeeeCCCCC-cccccccceeeeeCCCEEEEECCCCCCHHHHHHHHhhccCCCCCCC
Q 001438 1017 TIELRGVHFSYPSRP-EVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKA 1077 (1077)
Q Consensus 1017 ~I~f~nVsf~Y~~~~-~~~VLk~vsl~I~~GekVaIVGrTGsGKSTLi~lL~Rfyd~~~G~i 1077 (1077)
-|+++||+++|+.+. ..++|+|+||+|++||.+||+||+|||||||+++|.++++|++|+|
T Consensus 5 ~l~~~~l~~~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i 66 (233)
T PRK11629 5 LLQCDNLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDV 66 (233)
T ss_pred eEEEEeEEEEcCCCCcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEE
Confidence 489999999997432 1458999999999999999999999999999999999999999975
|
|
| >PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.3e-11 Score=137.17 Aligned_cols=60 Identities=35% Similarity=0.621 Sum_probs=54.3
Q ss_pred EEEeeeeeeCCCCCc--ccccccceeeeeCCCEEEEECCCCCCHHHHHHHHhhccCCCCCCC
Q 001438 1018 IELRGVHFSYPSRPE--VVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKA 1077 (1077)
Q Consensus 1018 I~f~nVsf~Y~~~~~--~~VLk~vsl~I~~GekVaIVGrTGsGKSTLi~lL~Rfyd~~~G~i 1077 (1077)
|+|+||+|+|++..+ .++|+|+||+|++||.+||+|++|||||||+++|.++++|++|+|
T Consensus 2 i~~~~v~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i 63 (288)
T PRK13643 2 IKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKV 63 (288)
T ss_pred EEEEEEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEE
Confidence 789999999974321 258999999999999999999999999999999999999999975
|
|
| >TIGR01069 mutS2 MutS2 family protein | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.3e-10 Score=144.00 Aligned_cols=131 Identities=18% Similarity=0.241 Sum_probs=91.7
Q ss_pred eeEEecCC-cEEEEEcCCCCcHHHHHHHHhcc-cCCCccEEEECCeeCCCCCHHHHhhheeEEccCCCcccccHHHHHhc
Q 001438 403 FCLDIPAG-KIVALVGGSGSGKSTVISLIERF-YEPLSGEILLDGNNIKGLDLKWLRQQIGLVNQEPALFATTIRENILY 480 (1077)
Q Consensus 403 isl~i~~g-~~~~ivG~~GsGKSTl~~~l~g~-~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~~ni~~ 480 (1077)
+|+++.++ +.++|+||||+||||+++.+.+. +.+..|. +||..+.. .-.+.+++..
T Consensus 314 ~di~l~~~~~~liItGpNg~GKSTlLK~i~~~~l~aq~G~---------------------~Vpa~~~~-~~~~~d~i~~ 371 (771)
T TIGR01069 314 FTLNLKFEKRVLAITGPNTGGKTVTLKTLGLLALMFQSGI---------------------PIPANEHS-EIPYFEEIFA 371 (771)
T ss_pred ceeEeCCCceEEEEECCCCCCchHHHHHHHHHHHHHHhCC---------------------CccCCccc-cccchhheee
Confidence 78888877 89999999999999999999987 3443331 44443310 0011222211
Q ss_pred CCCCCCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHH
Q 001438 481 GKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQ 560 (1077)
Q Consensus 481 ~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~~~p~illlDEpts~lD~~~~~~i~ 560 (1077)
. ..+ +-.+.++..++|+|++|+..+++++ .+|+++|||||++++|+.....+.
T Consensus 372 ~---i~~-----------------------~~si~~~LStfS~~m~~~~~il~~~-~~~sLvLlDE~g~GtD~~eg~ala 424 (771)
T TIGR01069 372 D---IGD-----------------------EQSIEQNLSTFSGHMKNISAILSKT-TENSLVLFDELGAGTDPDEGSALA 424 (771)
T ss_pred e---cCh-----------------------HhHHhhhhhHHHHHHHHHHHHHHhc-CCCcEEEecCCCCCCCHHHHHHHH
Confidence 0 000 0112233457999999999999987 789999999999999999888774
Q ss_pred -HHHHHHh-CCCeEEEEccCchhH
Q 001438 561 -EALDRVM-VGRTTVVVAHRLSTI 582 (1077)
Q Consensus 561 -~~l~~~~-~~~t~i~vtH~~~~~ 582 (1077)
..+..+. ++.++|++||..+..
T Consensus 425 ~aiLe~l~~~g~~viitTH~~eL~ 448 (771)
T TIGR01069 425 ISILEYLLKQNAQVLITTHYKELK 448 (771)
T ss_pred HHHHHHHHhcCCEEEEECChHHHH
Confidence 4555543 588999999998754
|
Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function. |
| >PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.6e-11 Score=136.91 Aligned_cols=63 Identities=25% Similarity=0.459 Sum_probs=56.8
Q ss_pred cccEEEeeeeeeCCCCC--cccccccceeeeeCCCEEEEECCCCCCHHHHHHHHhhccCCCCCCC
Q 001438 1015 EGTIELRGVHFSYPSRP--EVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKA 1077 (1077)
Q Consensus 1015 ~G~I~f~nVsf~Y~~~~--~~~VLk~vsl~I~~GekVaIVGrTGsGKSTLi~lL~Rfyd~~~G~i 1077 (1077)
.|.|+++|++++|+.++ ..++|+|+||+|++||.+||+||+|||||||+++|.+++.|++|+|
T Consensus 4 ~~~l~i~nl~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i 68 (289)
T PRK13645 4 SKDIILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQT 68 (289)
T ss_pred cceEEEEEEEEEeCCCCccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceE
Confidence 47899999999997542 1358999999999999999999999999999999999999999975
|
|
| >cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.5e-11 Score=129.90 Aligned_cols=60 Identities=35% Similarity=0.568 Sum_probs=54.1
Q ss_pred EEEeeeeeeCCCCCc--ccccccceeeeeCCCEEEEECCCCCCHHHHHHHHhhccCCCCCCC
Q 001438 1018 IELRGVHFSYPSRPE--VVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKA 1077 (1077)
Q Consensus 1018 I~f~nVsf~Y~~~~~--~~VLk~vsl~I~~GekVaIVGrTGsGKSTLi~lL~Rfyd~~~G~i 1077 (1077)
|+++||+++|+++.. .++|+|+||+|++||.++|+||+|||||||+++|.|+++|++|+|
T Consensus 1 l~~~~l~~~~~~~~~~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i 62 (204)
T cd03250 1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSV 62 (204)
T ss_pred CEEeEEEEecCCCCccccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeE
Confidence 579999999975421 358999999999999999999999999999999999999999976
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.4e-11 Score=139.08 Aligned_cols=60 Identities=27% Similarity=0.487 Sum_probs=54.5
Q ss_pred EEEeeeeeeCCCCC-cccccccceeeeeCCCEEEEECCCCCCHHHHHHHHhhccCCCCCCC
Q 001438 1018 IELRGVHFSYPSRP-EVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKA 1077 (1077)
Q Consensus 1018 I~f~nVsf~Y~~~~-~~~VLk~vsl~I~~GekVaIVGrTGsGKSTLi~lL~Rfyd~~~G~i 1077 (1077)
|+|+||+++|+... ..++|+|+||+|++||.+||+||||||||||+.+|.++++|++|+|
T Consensus 2 I~~~~lsk~y~~~~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I 62 (343)
T TIGR02314 2 IKLSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSV 62 (343)
T ss_pred EEEEEEEEEECCCCcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEE
Confidence 78999999996422 2468999999999999999999999999999999999999999975
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. |
| >PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.7e-11 Score=135.75 Aligned_cols=61 Identities=28% Similarity=0.543 Sum_probs=55.5
Q ss_pred cEEEeeeeeeCCCCCcccccccceeeeeCCCEEEEECCCCCCHHHHHHHHhhccCCCCCCC
Q 001438 1017 TIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKA 1077 (1077)
Q Consensus 1017 ~I~f~nVsf~Y~~~~~~~VLk~vsl~I~~GekVaIVGrTGsGKSTLi~lL~Rfyd~~~G~i 1077 (1077)
-|+++||+++|+.....++|+|+||+|++||.+||+|++|||||||+++|.++++|++|+|
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i 64 (277)
T PRK13642 4 ILEVENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKV 64 (277)
T ss_pred eEEEEEEEEEcCCCCcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEE
Confidence 4899999999975333458999999999999999999999999999999999999999975
|
|
| >COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.8e-11 Score=129.80 Aligned_cols=59 Identities=39% Similarity=0.725 Sum_probs=55.5
Q ss_pred cEEEeeeeeeCCCCCcccccccceeeeeCCCEEEEECCCCCCHHHHHHHHhhccCCCCCCC
Q 001438 1017 TIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKA 1077 (1077)
Q Consensus 1017 ~I~f~nVsf~Y~~~~~~~VLk~vsl~I~~GekVaIVGrTGsGKSTLi~lL~Rfyd~~~G~i 1077 (1077)
.|+++|++|+|+++ .++|+|+||+|++||.++|+|+||||||||+.+|.+++.|++|.|
T Consensus 3 ~i~~~~l~~~y~~~--~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v 61 (235)
T COG1122 3 MIEAENLSFRYPGR--KAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEV 61 (235)
T ss_pred eEEEEEEEEEcCCC--ceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEE
Confidence 58999999999876 468999999999999999999999999999999999999999975
|
|
| >COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.6e-11 Score=125.46 Aligned_cols=59 Identities=44% Similarity=0.678 Sum_probs=55.1
Q ss_pred ccEEEeeeeeeCCCCCcccccccceeeeeCCCEEEEECCCCCCHHHHHHHHhhccCCCCCCC
Q 001438 1016 GTIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKA 1077 (1077)
Q Consensus 1016 G~I~f~nVsf~Y~~~~~~~VLk~vsl~I~~GekVaIVGrTGsGKSTLi~lL~Rfyd~~~G~i 1077 (1077)
--|++++|+++|.+ +.||+||||+|++||.+||+|+||||||||+.++.++..|++|+|
T Consensus 7 ~~I~vr~v~~~fG~---~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI 65 (263)
T COG1127 7 PLIEVRGVTKSFGD---RVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEI 65 (263)
T ss_pred ceEEEeeeeeecCC---EEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeE
Confidence 36999999999954 468999999999999999999999999999999999999999986
|
|
| >cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE) | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.3e-11 Score=131.97 Aligned_cols=60 Identities=37% Similarity=0.591 Sum_probs=53.5
Q ss_pred EEEeeeeeeCCCCC-cccccccceeeeeCCCEEEEECCCCCCHHHHHHHHhhccCCCCCCC
Q 001438 1018 IELRGVHFSYPSRP-EVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKA 1077 (1077)
Q Consensus 1018 I~f~nVsf~Y~~~~-~~~VLk~vsl~I~~GekVaIVGrTGsGKSTLi~lL~Rfyd~~~G~i 1077 (1077)
|+++||+++|++.. ..++|+|+||+|++||++||+||+|||||||+++|.++++|++|+|
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i 61 (218)
T cd03255 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEV 61 (218)
T ss_pred CeEeeeEEEecCCCcceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeE
Confidence 57899999996421 1358999999999999999999999999999999999999999975
|
They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. |
| >cd03288 ABCC_SUR2 The SUR domain 2 | Back alignment and domain information |
|---|
Probab=99.19 E-value=2e-11 Score=133.72 Aligned_cols=63 Identities=24% Similarity=0.474 Sum_probs=57.4
Q ss_pred ccccEEEeeeeeeCCCCCcccccccceeeeeCCCEEEEECCCCCCHHHHHHHHhhccCCCCCCC
Q 001438 1014 VEGTIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKA 1077 (1077)
Q Consensus 1014 ~~G~I~f~nVsf~Y~~~~~~~VLk~vsl~I~~GekVaIVGrTGsGKSTLi~lL~Rfyd~~~G~i 1077 (1077)
..|.|+++|++++|+.. ..++|+|+||+|+|||.+||+|++|||||||+++|.++++|++|+|
T Consensus 16 ~~~~i~~~~l~~~~~~~-~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i 78 (257)
T cd03288 16 LGGEIKIHDLCVRYENN-LKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKI 78 (257)
T ss_pred CCceEEEEEEEEEeCCC-CCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCCCCCeE
Confidence 46899999999999753 2358999999999999999999999999999999999999999975
|
The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. |
| >TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.9e-11 Score=130.90 Aligned_cols=60 Identities=32% Similarity=0.547 Sum_probs=54.1
Q ss_pred EEEeeeeeeCCCCC-cccccccceeeeeCCCEEEEECCCCCCHHHHHHHHhhccCCCCCCC
Q 001438 1018 IELRGVHFSYPSRP-EVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKA 1077 (1077)
Q Consensus 1018 I~f~nVsf~Y~~~~-~~~VLk~vsl~I~~GekVaIVGrTGsGKSTLi~lL~Rfyd~~~G~i 1077 (1077)
|+++||+++|++.. ..++|+|+||+|++||.+||+||+|||||||+++|.++++|++|+|
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i 62 (221)
T TIGR02211 2 LKCENLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEV 62 (221)
T ss_pred EEEEeeeEEccCCCcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEE
Confidence 68999999996421 2358999999999999999999999999999999999999999975
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina. |
| >cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain | Back alignment and domain information |
|---|
Probab=99.19 E-value=2.2e-11 Score=124.99 Aligned_cols=59 Identities=39% Similarity=0.778 Sum_probs=53.6
Q ss_pred EEEeeeeeeCCCCCcccccccceeeeeCCCEEEEECCCCCCHHHHHHHHhhccCCCCCCC
Q 001438 1018 IELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKA 1077 (1077)
Q Consensus 1018 I~f~nVsf~Y~~~~~~~VLk~vsl~I~~GekVaIVGrTGsGKSTLi~lL~Rfyd~~~G~i 1077 (1077)
|+++|++++|+.. ..++++|+||+|++||.+||+|++|||||||+++|.++++|++|+|
T Consensus 1 i~~~~l~~~~~~~-~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i 59 (173)
T cd03246 1 LEVENVSFRYPGA-EPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRV 59 (173)
T ss_pred CEEEEEEEEcCCC-CCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeE
Confidence 5799999999743 2357999999999999999999999999999999999999999975
|
They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra |
| >PRK13651 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.19 E-value=2.1e-11 Score=136.26 Aligned_cols=61 Identities=20% Similarity=0.456 Sum_probs=54.9
Q ss_pred cEEEeeeeeeCCCCCc--ccccccceeeeeCCCEEEEECCCCCCHHHHHHHHhhccCCCCCCC
Q 001438 1017 TIELRGVHFSYPSRPE--VVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKA 1077 (1077)
Q Consensus 1017 ~I~f~nVsf~Y~~~~~--~~VLk~vsl~I~~GekVaIVGrTGsGKSTLi~lL~Rfyd~~~G~i 1077 (1077)
.|+++||+++|+...+ .++|+|+||+|++||.+||+|++|||||||+++|.+++.|++|+|
T Consensus 2 ~i~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i 64 (305)
T PRK13651 2 QIKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTI 64 (305)
T ss_pred EEEEEEEEEEECCCCCccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEE
Confidence 3899999999975322 358999999999999999999999999999999999999999975
|
|
| >TIGR00634 recN DNA repair protein RecN | Back alignment and domain information |
|---|
Probab=99.18 E-value=3.7e-11 Score=145.79 Aligned_cols=76 Identities=20% Similarity=0.310 Sum_probs=71.6
Q ss_pred CCChHHHHHHHHHHHhccC----CCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEccCchhHhhcCEEEEEECCE
Q 001438 520 QLSGGQKQRIAISRAIVKN----PSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRNADVIAVVQGRK 595 (1077)
Q Consensus 520 ~LSgGqkqri~lARal~~~----p~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~vtH~~~~~~~~d~i~~l~~G~ 595 (1077)
.|||||+||++|||+++.. |+++|||||+++||+.+...+.+.|+++.+++|+|+|||+++.+..||++++|++|.
T Consensus 440 ~lSgGe~~rv~la~~l~~~~~~~~~~lilDEp~~gld~~~~~~~~~~l~~l~~~~~vi~iTH~~~~~~~ad~~~~l~k~~ 519 (563)
T TIGR00634 440 VASGGELSRVMLALKVVLSSSAAVTTLIFDEVDVGVSGETAQAIAKKLAQLSERHQVLCVTHLPQVAAHADAHFKVEKEG 519 (563)
T ss_pred hcCHhHHHHHHHHHHHhhCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhcCCEEEEEEChHHHHHhcCeEEEEEEcc
Confidence 6999999999999999885 699999999999999999999999999878999999999999998899999999875
|
All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair. |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 1077 | ||||
| 3g5u_A | 1284 | Structure Of P-Glycoprotein Reveals A Molecular Bas | 0.0 | ||
| 3g60_A | 1284 | Structure Of P-Glycoprotein Reveals A Molecular Bas | 0.0 | ||
| 4f4c_A | 1321 | The Crystal Structure Of The Multi-Drug Transporter | 1e-146 | ||
| 4f4c_A | 1321 | The Crystal Structure Of The Multi-Drug Transporter | 4e-41 | ||
| 4ayt_A | 595 | Structure Of The Human Mitochondrial Abc Transporte | 1e-95 | ||
| 4ayt_A | 595 | Structure Of The Human Mitochondrial Abc Transporte | 6e-33 | ||
| 4ayw_A | 619 | Structure Of The Human Mitochondrial Abc Transporte | 6e-95 | ||
| 4ayw_A | 619 | Structure Of The Human Mitochondrial Abc Transporte | 3e-33 | ||
| 3b5w_A | 582 | Crystal Structure Of Eschericia Coli Msba Length = | 2e-66 | ||
| 3b5w_A | 582 | Crystal Structure Of Eschericia Coli Msba Length = | 3e-17 | ||
| 3b5y_A | 582 | Crystal Structure Of Msba From Salmonella Typhimuri | 5e-66 | ||
| 3b5y_A | 582 | Crystal Structure Of Msba From Salmonella Typhimuri | 2e-17 | ||
| 2hyd_A | 578 | Multidrug Abc Transporter Sav1866 Length = 578 | 2e-64 | ||
| 2hyd_A | 578 | Multidrug Abc Transporter Sav1866 Length = 578 | 3e-11 | ||
| 3b5x_A | 582 | Crystal Structure Of Msba From Vibrio Cholerae Leng | 2e-61 | ||
| 3b5x_A | 582 | Crystal Structure Of Msba From Vibrio Cholerae Leng | 4e-07 | ||
| 3qf4_B | 598 | Crystal Structure Of A Heterodimeric Abc Transporte | 3e-61 | ||
| 3qf4_B | 598 | Crystal Structure Of A Heterodimeric Abc Transporte | 5e-17 | ||
| 2pmk_A | 243 | Crystal Structures Of An Isolated Abc-Atpase In Com | 3e-57 | ||
| 2pmk_A | 243 | Crystal Structures Of An Isolated Abc-Atpase In Com | 5e-07 | ||
| 1mt0_A | 241 | Atp-Binding Domain Of Haemolysin B From Escherichia | 5e-57 | ||
| 1mt0_A | 241 | Atp-Binding Domain Of Haemolysin B From Escherichia | 5e-07 | ||
| 2ff7_A | 247 | The Abc-Atpase Of The Abc-Transporter Hlyb In The A | 5e-57 | ||
| 2ff7_A | 247 | The Abc-Atpase Of The Abc-Transporter Hlyb In The A | 5e-07 | ||
| 3b5j_A | 243 | Crystal Structures Of The S504a Mutant Of An Isolat | 7e-57 | ||
| 3b5j_A | 243 | Crystal Structures Of The S504a Mutant Of An Isolat | 1e-06 | ||
| 2ffb_A | 247 | The Crystal Structure Of The Hlyb-Nbd E631q Mutant | 9e-57 | ||
| 2ffb_A | 247 | The Crystal Structure Of The Hlyb-Nbd E631q Mutant | 5e-07 | ||
| 1mv5_A | 243 | Crystal Structure Of Lmra Atp-Binding Domain Length | 5e-56 | ||
| 1mv5_A | 243 | Crystal Structure Of Lmra Atp-Binding Domain Length | 3e-05 | ||
| 1xef_A | 241 | Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DI | 9e-56 | ||
| 1xef_A | 241 | Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DI | 5e-07 | ||
| 2ffa_A | 247 | Crystal Structure Of Abc-Atpase H662a Of The Abc-Tr | 9e-56 | ||
| 2ffa_A | 247 | Crystal Structure Of Abc-Atpase H662a Of The Abc-Tr | 5e-07 | ||
| 1jj7_A | 260 | Crystal Structure Of The C-Terminal Atpase Domain O | 3e-52 | ||
| 1jj7_A | 260 | Crystal Structure Of The C-Terminal Atpase Domain O | 9e-11 | ||
| 2ghi_A | 260 | Crystal Structure Of Plasmodium Yoelii Multidrug Re | 2e-51 | ||
| 2ghi_A | 260 | Crystal Structure Of Plasmodium Yoelii Multidrug Re | 4e-07 | ||
| 3nh6_A | 306 | Nucleotide Binding Domain Of Human Abcb6 (Apo Struc | 4e-50 | ||
| 3nh6_A | 306 | Nucleotide Binding Domain Of Human Abcb6 (Apo Struc | 4e-09 | ||
| 2ixf_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 2e-48 | ||
| 2ixf_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 2e-09 | ||
| 2ixe_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 4e-47 | ||
| 2ixe_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 3e-09 | ||
| 2ixg_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 1e-45 | ||
| 2ixg_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 3e-09 | ||
| 3qf4_A | 587 | Crystal Structure Of A Heterodimeric Abc Transporte | 2e-44 | ||
| 3qf4_A | 587 | Crystal Structure Of A Heterodimeric Abc Transporte | 3e-17 | ||
| 3dhw_C | 343 | Crystal Structure Of Methionine Importer Metni Leng | 8e-25 | ||
| 3tui_C | 366 | Inward Facing Conformations Of The Metni Methionine | 2e-24 | ||
| 2it1_A | 362 | Structure Of Ph0203 Protein From Pyrococcus Horikos | 2e-24 | ||
| 2it1_A | 362 | Structure Of Ph0203 Protein From Pyrococcus Horikos | 4e-05 | ||
| 3tuj_C | 366 | Inward Facing Conformations Of The Metni Methionine | 2e-23 | ||
| 2cbz_A | 237 | Structure Of The Human Multidrug Resistance Protein | 3e-23 | ||
| 3d31_A | 348 | Modbc From Methanosarcina Acetivorans Length = 348 | 1e-21 | ||
| 2yyz_A | 359 | Crystal Structure Of Sugar Abc Transporter, Atp-Bin | 4e-21 | ||
| 1z47_A | 355 | Structure Of The Atpase Subunit Cysa Of The Putativ | 4e-21 | ||
| 1z47_A | 355 | Structure Of The Atpase Subunit Cysa Of The Putativ | 9e-04 | ||
| 1l2t_A | 235 | Dimeric Structure Of Mj0796, A Bacterial Abc Transp | 2e-20 | ||
| 3tif_A | 235 | Dimeric Structure Of A Post-Hydrolysis State Of The | 4e-20 | ||
| 3c41_J | 242 | Abc Protein Artp In Complex With Amp-PnpMG2+ Length | 2e-19 | ||
| 2olj_A | 263 | Abc Protein Artp In Complex With AdpMG2+ Length = 2 | 2e-19 | ||
| 1f3o_A | 235 | Crystal Structure Of Mj0796 Atp-Binding Cassette Le | 3e-19 | ||
| 1oxs_C | 353 | Crystal Structure Of Glcv, The Abc-Atpase Of The Gl | 1e-18 | ||
| 1oxx_K | 353 | Crystal Structure Of Glcv, The Abc-Atpase Of The Gl | 6e-18 | ||
| 1vci_A | 373 | Crystal Structure Of The Atp-binding Cassette Of Mu | 7e-18 | ||
| 3fvq_A | 359 | Crystal Structure Of The Nucleotide Binding Domain | 7e-18 | ||
| 1v43_A | 372 | Crystal Structure Of Atpase Subunit Of Abc Sugar Tr | 8e-18 | ||
| 2yz2_A | 266 | Crystal Structure Of The Abc Transporter In The Cob | 3e-17 | ||
| 4hlu_A | 268 | Structure Of The Ecfa-a' Heterodimer Bound To Adp L | 3e-17 | ||
| 1q3h_A | 286 | Mouse Cftr Nbd1 With Amp.Pnp Length = 286 | 6e-17 | ||
| 1r0z_A | 286 | Phosphorylated Cystic Fibrosis Transmembrane Conduc | 6e-17 | ||
| 2pze_A | 229 | Minimal Human Cftr First Nucleotide Binding Domain | 9e-17 | ||
| 2pzg_A | 241 | Minimal Human Cftr First Nucleotide Binding Domain | 9e-17 | ||
| 3gd7_A | 390 | Crystal Structure Of Human Nbd2 Complexed With N6- | 1e-16 | ||
| 2onk_A | 240 | Abc Transporter Modbc In Complex With Its Binding P | 2e-16 | ||
| 1xf9_A | 283 | Structure Of Nbd1 From Murine Cftr- F508s Mutant Le | 2e-16 | ||
| 1xfa_A | 283 | Structure Of Nbd1 From Murine Cftr- F508r Mutant Le | 3e-16 | ||
| 1xmi_A | 291 | Crystal Structure Of Human F508a Nbd1 Domain With A | 4e-16 | ||
| 2bbs_A | 290 | Human Deltaf508 Nbd1 With Three Solubilizing Mutati | 6e-16 | ||
| 1q12_A | 381 | Crystal Structure Of The Atp-bound E. Coli Malk Len | 7e-16 | ||
| 1q1b_A | 381 | Crystal Structure Of E. Coli Malk In The Nucleotide | 7e-16 | ||
| 2bbt_A | 290 | Human Deltaf508 Nbd1 With Two Solublizing Mutations | 9e-16 | ||
| 1g29_1 | 372 | Malk Length = 372 | 1e-15 | ||
| 3si7_A | 285 | The Crystal Structure Of The Nbd1 Domain Of The Mou | 1e-15 | ||
| 2d62_A | 375 | Crystal Structure Of Multiple Sugar Binding Transpo | 1e-15 | ||
| 2r6g_A | 381 | The Crystal Structure Of The E. Coli Maltose Transp | 2e-15 | ||
| 2pzf_A | 228 | Minimal Human Cftr First Nucleotide Binding Domain | 2e-15 | ||
| 1b0u_A | 262 | Atp-Binding Subunit Of The Histidine Permease From | 2e-15 | ||
| 4hlu_D | 268 | Structure Of The Ecfa-a' Heterodimer Bound To Adp L | 7e-15 | ||
| 2bbo_A | 291 | Human Nbd1 With Phe508 Length = 291 | 8e-15 | ||
| 4fwi_B | 334 | Crystal Structure Of The Nucleotide-binding Domain | 1e-13 | ||
| 1ji0_A | 240 | Crystal Structure Analysis Of The Abc Transporter F | 1e-13 | ||
| 1xmj_A | 290 | Crystal Structure Of Human Deltaf508 Human Nbd1 Dom | 2e-13 | ||
| 3gfo_A | 275 | Structure Of Cbio1 From Clostridium Perfringens: Pa | 3e-13 | ||
| 4g1u_C | 266 | X-Ray Structure Of The Bacterial Heme Transporter H | 2e-11 | ||
| 4dbl_C | 249 | Crystal Structure Of E159q Mutant Of Btucdf Length | 6e-11 | ||
| 4fi3_C | 249 | Structure Of Vitamin B12 Transporter Btucd-F In A N | 9e-11 | ||
| 1l7v_C | 249 | Bacterial Abc Transporter Involved In B12 Uptake Le | 1e-10 | ||
| 2pcj_A | 224 | Crystal Structure Of Abc Transporter (Aq_297) From | 1e-10 | ||
| 2qi9_C | 249 | Abc-Transporter Btucd In Complex With Its Periplasm | 1e-10 | ||
| 1vpl_A | 256 | Crystal Structure Of Abc Transporter Atp-binding Pr | 5e-10 | ||
| 2nq2_C | 253 | An Inward-Facing Conformation Of A Putative Metal-C | 1e-09 | ||
| 1gaj_A | 257 | Crystal Structure Of A Nucleotide-Free Atp-Binding | 1e-09 | ||
| 1g9x_A | 257 | Characterization Of The Twinning Structure Of Mj126 | 2e-09 | ||
| 1g6h_A | 257 | Crystal Structure Of The Adp Conformation Of Mj1267 | 3e-09 | ||
| 3pih_A | 916 | T. Maritima Uvra In Complex With Fluorescein-Modifi | 6e-09 | ||
| 2d2e_A | 250 | Crystal Structure Of Atypical Cytoplasmic Abc-Atpas | 1e-08 | ||
| 2d3w_A | 248 | Crystal Structure Of Escherichia Coli Sufc, An Atpa | 1e-07 | ||
| 2zu0_C | 267 | Crystal Structure Of Sufc-Sufd Complex Involved In | 1e-07 | ||
| 1sgw_A | 214 | Putative Abc Transporter (Atp-Binding Protein) From | 2e-07 | ||
| 1yqt_A | 538 | Rnase-L Inhibitor Length = 538 | 8e-07 | ||
| 3bk7_A | 607 | Structure Of The Complete Abce1RNAASE-L Inhibitor P | 1e-06 | ||
| 3j15_B | 593 | Model Of Ribosome-Bound Archaeal Pelota And Abce1 L | 1e-06 | ||
| 2ihy_A | 279 | Structure Of The Staphylococcus Aureus Putative Atp | 1e-04 | ||
| 3j16_B | 608 | Models Of Ribosome-Bound Dom34p And Rli1p And Their | 2e-04 | ||
| 3ozx_A | 538 | Crystal Structure Of Abce1 Of Sulfolubus Solfataric | 2e-04 | ||
| 3zqj_A | 993 | Mycobacterium Tuberculosis Uvra Length = 993 | 3e-04 | ||
| 3uwx_A | 972 | Crystal Structure Of Uvra-Uvrb Complex Length = 972 | 5e-04 | ||
| 2r6f_A | 972 | Crystal Structure Of Bacillus Stearothermophilus Uv | 7e-04 | ||
| 3ux8_A | 670 | Crystal Structure Of Uvra Length = 670 | 7e-04 |
| >pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284 | Back alignment and structure |
|
| >pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284 | Back alignment and structure |
|
| >pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter Length = 1321 | Back alignment and structure |
|
| >pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter Length = 1321 | Back alignment and structure |
|
| >pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 Length = 595 | Back alignment and structure |
|
| >pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 Length = 595 | Back alignment and structure |
|
| >pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 (plate Form) Length = 619 | Back alignment and structure |
|
| >pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 (plate Form) Length = 619 | Back alignment and structure |
|
| >pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba Length = 582 | Back alignment and structure |
|
| >pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba Length = 582 | Back alignment and structure |
|
| >pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With Amppnp Length = 582 | Back alignment and structure |
|
| >pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With Amppnp Length = 582 | Back alignment and structure |
|
| >pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866 Length = 578 | Back alignment and structure |
|
| >pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866 Length = 578 | Back alignment and structure |
|
| >pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae Length = 582 | Back alignment and structure |
|
| >pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae Length = 582 | Back alignment and structure |
|
| >pdb|3QF4|B Chain B, Crystal Structure Of A Heterodimeric Abc Transporter In Its Inward- Facing Conformation Length = 598 | Back alignment and structure |
|
| >pdb|3QF4|B Chain B, Crystal Structure Of A Heterodimeric Abc Transporter In Its Inward- Facing Conformation Length = 598 | Back alignment and structure |
|
| >pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex With Tnp-Adp Length = 243 | Back alignment and structure |
|
| >pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex With Tnp-Adp Length = 243 | Back alignment and structure |
|
| >pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli Length = 241 | Back alignment and structure |
|
| >pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli Length = 241 | Back alignment and structure |
|
| >pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp Bound State Length = 247 | Back alignment and structure |
|
| >pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp Bound State Length = 247 | Back alignment and structure |
|
| >pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated Abc-atpase In Complex With Tnp-adp Length = 243 | Back alignment and structure |
|
| >pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated Abc-atpase In Complex With Tnp-adp Length = 243 | Back alignment and structure |
|
| >pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In Complex With Adp Length = 247 | Back alignment and structure |
|
| >pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In Complex With Adp Length = 247 | Back alignment and structure |
|
| >pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain Length = 243 | Back alignment and structure |
|
| >pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain Length = 243 | Back alignment and structure |
|
| >pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF HLYB-Nbd Length = 241 | Back alignment and structure |
|
| >pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF HLYB-Nbd Length = 241 | Back alignment and structure |
|
| >pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The Abc-Transporter Hlyb In Complex With Adp Length = 247 | Back alignment and structure |
|
| >pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The Abc-Transporter Hlyb In Complex With Adp Length = 247 | Back alignment and structure |
|
| >pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human Tap1 Length = 260 | Back alignment and structure |
|
| >pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human Tap1 Length = 260 | Back alignment and structure |
|
| >pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug Resistance Protein 2 Length = 260 | Back alignment and structure |
|
| >pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug Resistance Protein 2 Length = 260 | Back alignment and structure |
|
| >pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure) Length = 306 | Back alignment and structure |
|
| >pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure) Length = 306 | Back alignment and structure |
|
| >pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (D645q, Q678h Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (D645q, Q678h Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|2IXE|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (d645n Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|2IXE|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (d645n Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|2IXG|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (S621a, G622v, D645n Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|2IXG|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (S621a, G622v, D645n Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In Its Inward- Facing Conformation Length = 587 | Back alignment and structure |
|
| >pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In Its Inward- Facing Conformation Length = 587 | Back alignment and structure |
|
| >pdb|3DHW|C Chain C, Crystal Structure Of Methionine Importer Metni Length = 343 | Back alignment and structure |
|
| >pdb|3TUI|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc Transporter: Cy5 Native Crystal Form Length = 366 | Back alignment and structure |
|
| >pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii Length = 362 | Back alignment and structure |
|
| >pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii Length = 362 | Back alignment and structure |
|
| >pdb|3TUJ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc Transporter: Dm Crystal Form Length = 366 | Back alignment and structure |
|
| >pdb|2CBZ|A Chain A, Structure Of The Human Multidrug Resistance Protein 1 Nucleotide Binding Domain 1 Length = 237 | Back alignment and structure |
|
| >pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans Length = 348 | Back alignment and structure |
|
| >pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding Protein Length = 359 | Back alignment and structure |
|
| >pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative Sulfate Atp-Binding Cassette (Abc) Transporter From Alicyclobacillus Acidocaldarius Length = 355 | Back alignment and structure |
|
| >pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative Sulfate Atp-Binding Cassette (Abc) Transporter From Alicyclobacillus Acidocaldarius Length = 355 | Back alignment and structure |
|
| >pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter Cassette Length = 235 | Back alignment and structure |
|
| >pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The Atp-Binding Cassette Mj0796 Bound To Adp And Pi Length = 235 | Back alignment and structure |
|
| >pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+ Length = 242 | Back alignment and structure |
|
| >pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+ Length = 263 | Back alignment and structure |
|
| >pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette Length = 235 | Back alignment and structure |
|
| >pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc Transporter From Sulfolobus Solfataricus Length = 353 | Back alignment and structure |
|
| >pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc Transporter From Sulfolobus Solfataricus Length = 353 | Back alignment and structure |
|
| >pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of Multisugar Transporter From Pyrococcus Horikoshii Ot3 Complexed With Atp Length = 373 | Back alignment and structure |
|
| >pdb|3FVQ|A Chain A, Crystal Structure Of The Nucleotide Binding Domain Fbpc Complexed With Atp Length = 359 | Back alignment and structure |
|
| >pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar Transporter Length = 372 | Back alignment and structure |
|
| >pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt Transport System Length = 266 | Back alignment and structure |
|
| >pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp Length = 268 | Back alignment and structure |
|
| >pdb|1Q3H|A Chain A, Mouse Cftr Nbd1 With Amp.Pnp Length = 286 | Back alignment and structure |
|
| >pdb|1R0Z|A Chain A, Phosphorylated Cystic Fibrosis Transmembrane Conductance Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1) With Atp Length = 286 | Back alignment and structure |
|
| >pdb|2PZE|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Head-To-Tail Dimer Length = 229 | Back alignment and structure |
|
| >pdb|2PZG|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Monomer Length = 241 | Back alignment and structure |
|
| >pdb|3GD7|A Chain A, Crystal Structure Of Human Nbd2 Complexed With N6- Phenylethyl-Atp (P-Atp) Length = 390 | Back alignment and structure |
|
| >pdb|2ONK|A Chain A, Abc Transporter Modbc In Complex With Its Binding Protein Moda Length = 240 | Back alignment and structure |
|
| >pdb|1XF9|A Chain A, Structure Of Nbd1 From Murine Cftr- F508s Mutant Length = 283 | Back alignment and structure |
|
| >pdb|1XFA|A Chain A, Structure Of Nbd1 From Murine Cftr- F508r Mutant Length = 283 | Back alignment and structure |
|
| >pdb|1XMI|A Chain A, Crystal Structure Of Human F508a Nbd1 Domain With Atp Length = 291 | Back alignment and structure |
|
| >pdb|2BBS|A Chain A, Human Deltaf508 Nbd1 With Three Solubilizing Mutations Length = 290 | Back alignment and structure |
|
| >pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk Length = 381 | Back alignment and structure |
|
| >pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free Form Length = 381 | Back alignment and structure |
|
| >pdb|2BBT|A Chain A, Human Deltaf508 Nbd1 With Two Solublizing Mutations. Length = 290 | Back alignment and structure |
|
| >pdb|1G29|1 Chain 1, Malk Length = 372 | Back alignment and structure |
|
| >pdb|3SI7|A Chain A, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr Protein, Deltaf508 Mutant Length = 285 | Back alignment and structure |
|
| >pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport Atp- Binding Protein Length = 375 | Back alignment and structure |
|
| >pdb|2R6G|A Chain A, The Crystal Structure Of The E. Coli Maltose Transporter Length = 381 | Back alignment and structure |
|
| >pdb|2PZF|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Head-To-Tail Dimer With Delta F508 Length = 228 | Back alignment and structure |
|
| >pdb|1B0U|A Chain A, Atp-Binding Subunit Of The Histidine Permease From Salmonella Typhimurium Length = 262 | Back alignment and structure |
|
| >pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp Length = 268 | Back alignment and structure |
|
| >pdb|2BBO|A Chain A, Human Nbd1 With Phe508 Length = 291 | Back alignment and structure |
|
| >pdb|4FWI|B Chain B, Crystal Structure Of The Nucleotide-binding Domain Of A Dipeptide Abc Transporter Length = 334 | Back alignment and structure |
|
| >pdb|1JI0|A Chain A, Crystal Structure Analysis Of The Abc Transporter From Thermotoga Maritima Length = 240 | Back alignment and structure |
|
| >pdb|1XMJ|A Chain A, Crystal Structure Of Human Deltaf508 Human Nbd1 Domain With Atp Length = 290 | Back alignment and structure |
|
| >pdb|3GFO|A Chain A, Structure Of Cbio1 From Clostridium Perfringens: Part Of The Abc Transporter Complex Cbionq Length = 275 | Back alignment and structure |
|
| >pdb|4G1U|C Chain C, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv From Yersinia Pestis Length = 266 | Back alignment and structure |
|
| >pdb|4DBL|C Chain C, Crystal Structure Of E159q Mutant Of Btucdf Length = 249 | Back alignment and structure |
|
| >pdb|4FI3|C Chain C, Structure Of Vitamin B12 Transporter Btucd-F In A Nucleotide-Bound State Length = 249 | Back alignment and structure |
|
| >pdb|1L7V|C Chain C, Bacterial Abc Transporter Involved In B12 Uptake Length = 249 | Back alignment and structure |
|
| >pdb|2PCJ|A Chain A, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex Aeolicus Vf5 Length = 224 | Back alignment and structure |
|
| >pdb|2QI9|C Chain C, Abc-Transporter Btucd In Complex With Its Periplasmic Binding Protein Btuf Length = 249 | Back alignment and structure |
|
| >pdb|1VPL|A Chain A, Crystal Structure Of Abc Transporter Atp-binding Protein (tm0544) From Thermotoga Maritima At 2.10 A Resolution Length = 256 | Back alignment and structure |
|
| >pdb|2NQ2|C Chain C, An Inward-Facing Conformation Of A Putative Metal-Chelate Type Abc Transporter. Length = 253 | Back alignment and structure |
|
| >pdb|1GAJ|A Chain A, Crystal Structure Of A Nucleotide-Free Atp-Binding Cassette From An Abc Transporter Length = 257 | Back alignment and structure |
|
| >pdb|1G9X|A Chain A, Characterization Of The Twinning Structure Of Mj1267, An Atp-Binding Cassette Of An Abc Transporter Length = 257 | Back alignment and structure |
|
| >pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformation Of Mj1267, An Atp- Binding Cassette Of An Abc Transporter Length = 257 | Back alignment and structure |
|
| >pdb|3PIH|A Chain A, T. Maritima Uvra In Complex With Fluorescein-Modified Dna Length = 916 | Back alignment and structure |
|
| >pdb|2D2E|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc From Thermus Thermophilus Hb8 Length = 250 | Back alignment and structure |
|
| >pdb|2D3W|A Chain A, Crystal Structure Of Escherichia Coli Sufc, An Atpase Compenent Of The Suf Iron-Sulfur Cluster Assembly Machinery Length = 248 | Back alignment and structure |
|
| >pdb|2ZU0|C Chain C, Crystal Structure Of Sufc-Sufd Complex Involved In The Iron- Sulfur Cluster Biosynthesis Length = 267 | Back alignment and structure |
|
| >pdb|1SGW|A Chain A, Putative Abc Transporter (Atp-Binding Protein) From Pyrococcus Furiosus Pfu-867808-001 Length = 214 | Back alignment and structure |
|
| >pdb|1YQT|A Chain A, Rnase-L Inhibitor Length = 538 | Back alignment and structure |
|
| >pdb|3BK7|A Chain A, Structure Of The Complete Abce1RNAASE-L Inhibitor Protein From Pyrococcus Abysii Length = 607 | Back alignment and structure |
|
| >pdb|3J15|B Chain B, Model Of Ribosome-Bound Archaeal Pelota And Abce1 Length = 593 | Back alignment and structure |
|
| >pdb|2IHY|A Chain A, Structure Of The Staphylococcus Aureus Putative Atpase Subunit Of An Atp-Binding Cassette (Abc) Transporter Length = 279 | Back alignment and structure |
|
| >pdb|3J16|B Chain B, Models Of Ribosome-Bound Dom34p And Rli1p And Their Ribosomal Binding Partners Length = 608 | Back alignment and structure |
|
| >pdb|3OZX|A Chain A, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus (-Fes Domain) Length = 538 | Back alignment and structure |
|
| >pdb|3ZQJ|A Chain A, Mycobacterium Tuberculosis Uvra Length = 993 | Back alignment and structure |
|
| >pdb|3UWX|A Chain A, Crystal Structure Of Uvra-Uvrb Complex Length = 972 | Back alignment and structure |
|
| >pdb|2R6F|A Chain A, Crystal Structure Of Bacillus Stearothermophilus Uvra Length = 972 | Back alignment and structure |
|
| >pdb|3UX8|A Chain A, Crystal Structure Of Uvra Length = 670 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 | Back alignment and structure |
|---|
Score = 1258 bits (3258), Expect = 0.0
Identities = 366/1089 (33%), Positives = 612/1089 (56%), Gaps = 27/1089 (2%)
Query: 12 NDYNNSSNNNNNNNTEDQESSKKQQQKRSVSLFKLFAFADFYDYILMSLGSIGACVHGVS 71
+ + N + + +K+++K +VS+ +F +A + D + M +G++ A +HGV+
Sbjct: 4 EEDLKGRADKNFSKMGKKSKKEKKEKKPAVSVLTMFRYAGWLDRLYMLVGTLAAIIHGVA 63
Query: 72 VPVFFIFFGKLINIIGLAYLFPKTAS---------------HKVAKYSLDFVYLSVAILF 116
+P+ + FG + + K ++ ++ Y+ + + +L
Sbjct: 64 LPLMMLIFGDMTDSFASVGNVSKNSTNMSEADKRAMFAKLEEEMTTYAYYYTGIGAGVLI 123
Query: 117 SSWIEVSCWMYTGERQAAKMRMAYLRSMLNQDISLFDTEASTGEVISAITSDIIVVQDAL 176
++I+VS W RQ K+R + +++NQ+I FD GE+ + +T D+ + + +
Sbjct: 124 VAYIQVSFWCLAAGRQIHKIRQKFFHAIMNQEIGWFDVH-DVGELNTRLTDDVSKINEGI 182
Query: 177 SEKVGNFMHYISRFLGGFIIGFARVWQISLVTLSIVPLIALAGGMYAYVTIGLIARVRKS 236
+K+G F ++ F GGFIIGF R W+++LV L+I P++ L+ G++A + + +
Sbjct: 183 GDKIGMFFQAMATFFGGFIIGFTRGWKLTLVILAISPVLGLSAGIWAKILSSFTDKELHA 242
Query: 237 YVKAGEIAEEVIGNVRTVQAFAGEDKAVKVYKEALSNTYKYGRKAGLAKGLGLGSMHCVL 296
Y KAG +AEEV+ +RTV AF G+ K ++ Y L + G K + + +G+ ++
Sbjct: 243 YAKAGAVAEEVLAAIRTVIAFGGQKKELERYNNNLEEAKRLGIKKAITANISMGAAFLLI 302
Query: 297 FLSWSLLVWYVSVVVHKHISNGGESFTTMLNVVIAGLSLGQAAPDITAFIRAKAAAYPIF 356
+ S++L WY + +V + G+ T +V+I S+GQA+P+I AF A+ AAY +F
Sbjct: 303 YASYALAFWYGTSLVISKEYSIGQVLTVFFSVLIGAFSVGQASPNIEAFANARGAAYEVF 362
Query: 357 EMIERDTMSKASSKTGRKLDKLSGHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALV 416
++I+ + SK+G K D + G++EFK++ F YPSR +V I L + +G+ VALV
Sbjct: 363 KIIDNKPSIDSFSKSGHKPDNIQGNLEFKNIHFSYPSRKEVQILKGLNLKVKSGQTVALV 422
Query: 417 GGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIGLVNQEPALFATTIRE 476
G SG GKST + L++R Y+PL G + +DG +I+ +++++LR+ IG+V+QEP LFATTI E
Sbjct: 423 GNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLREIIGVVSQEPVLFATTIAE 482
Query: 477 NILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIV 536
NI YG++D TM+EI +A K + A FI LP +F+T VGERG QLSGGQKQRIAI+RA+V
Sbjct: 483 NIRYGREDVTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALV 542
Query: 537 KNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRNADVIAVVQGRKI 596
+NP ILLLDEATSALD ESE VQ ALD+ GRTT+V+AHRLST+RNADVIA G I
Sbjct: 543 RNPKILLLDEATSALDTESEAVVQAALDKAREGRTTIVIAHRLSTVRNADVIAGFDGGVI 602
Query: 597 VKTGSHEELISNPNSAYAALVQLQEAASQQ-----SNSSQCPNMGRPLSIKFSRELSGTR 651
V+ G+H+EL+ Y LV Q A ++ + S+ +S K S R
Sbjct: 603 VEQGNHDELMRE-KGIYFKLVMTQTAGNEIELGNEACKSKDEIDNLDMSSKDSGSSLIRR 661
Query: 652 TSFGASFRSEKESVLSHGAADATEPATAKHVSAIKLYSMVRPDWTYGVCGTICAIIAGAQ 711
S S + +A + S ++ + +W Y V G CAII G
Sbjct: 662 RSTRKSICGPHDQDRKLSTKEALDEDVPP-ASFWRILKLNSTEWPYFVVGIFCAIINGGL 720
Query: 712 MPLFALGVSQALVAYYM--DWDTTQREVKKITILFCCAAVITVIVHAIEHLSFGIMGERL 769
P F++ S+ + + +T ++ ++LF +I+ I ++ +FG GE L
Sbjct: 721 QPAFSVIFSKVVGVFTNGGPPETQRQNSNLFSLLFLILGIISFITFFLQGFTFGKAGEIL 780
Query: 770 TLRVREKMFSAILSNEIGWFDEMDNSSSILASRLESDATLLRTIVVDRSTILIQNFGLVT 829
T R+R +F ++L ++ WFD+ N++ L +RL +DA ++ R ++ QN +
Sbjct: 781 TKRLRYMVFKSMLRQDVSWFDDPKNTTGALTTRLANDAAQVKGATGSRLAVIFQNIANLG 840
Query: 830 ASFVIAFILNWRITLVVVATYPLIISGHISEKLFFQGYGGNLSKAYLKANMLAAEAVSNI 889
+I+ I W++TL+++A P+I + E G K + +A EA+ N
Sbjct: 841 TGIIISLIYGWQLTLLLLAIVPIIAIAGVVEMKMLSGQALKDKKELEGSGKIATEAIENF 900
Query: 890 RTVAAFCSEDKVLELYSRELVEPSKRSFIRGQIAGIFYGISQFFIFSSYGLALWYGSVLM 949
RTV + E K +Y++ L P + + + + GI + +Q ++ SY A +G+ L+
Sbjct: 901 RTVVSLTREQKFETMYAQSLQIPYRNAMKKAHVFGITFSFTQAMMYFSYAAAFRFGAYLV 960
Query: 950 GKELASFKSVMKSFMVLIVTALAMGETLALVPDLLKGNQMAASVFEVLDRKTQV--IGDI 1007
++L +F++V+ F ++ A+A+G+ + PD K A+ + ++++ ++
Sbjct: 961 TQQLMTFENVLLVFSAIVFGAMAVGQVSSFAPDYAKATVSASHIIRIIEKTPEIDSYSTQ 1020
Query: 1008 GEELTNVEGTIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLIL 1067
G + +EG ++ GV F+YP+RP + + + +L+V+ G+++ALVG SG GKSTV+ L+
Sbjct: 1021 GLKPNMLEGNVQFSGVVFNYPTRPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLE 1080
Query: 1068 RFYDPTAGK 1076
RFYDP AG
Sbjct: 1081 RFYDPMAGS 1089
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 | Back alignment and structure |
|---|
Score = 678 bits (1751), Expect = 0.0
Identities = 206/618 (33%), Positives = 338/618 (54%), Gaps = 6/618 (0%)
Query: 16 NSSNNNNNNNTEDQESSKKQQQKRSVSLFKLFAFADFYDYILMSLGSIGACVHGVSVPVF 75
S ++ + + + S +++ ++ +G A ++G P F
Sbjct: 666 KSICGPHDQDRKLSTKEALDEDVPPASFWRILKLNST-EWPYFVVGIFCAIINGGLQPAF 724
Query: 76 FIFFGKLINIIGLAYLFPKTASHKVAKYSLDFVYLSVAILFSSWIEVSCWMYTGERQAAK 135
+ F K++ + P+T +SL F+ L + + +++ + GE +
Sbjct: 725 SVIFSKVVGVFTNG-GPPETQRQNSNLFSLLFLILGIISFITFFLQGFTFGKAGEILTKR 783
Query: 136 MRMAYLRSMLNQDISLFDTEA-STGEVISAITSDIIVVQDALSEKVGNFMHYISRFLGGF 194
+R +SML QD+S FD +TG + + + +D V+ A ++ I+ G
Sbjct: 784 LRYMVFKSMLRQDVSWFDDPKNTTGALTTRLANDAAQVKGATGSRLAVIFQNIANLGTGI 843
Query: 195 IIGFARVWQISLVTLSIVPLIALAGGMYAYVTIGLIARVRKSYVKAGEIAEEVIGNVRTV 254
II WQ++L+ L+IVP+IA+AG + + G + +K +G+IA E I N RTV
Sbjct: 844 IISLIYGWQLTLLLLAIVPIIAIAGVVEMKMLSGQALKDKKELEGSGKIATEAIENFRTV 903
Query: 255 QAFAGEDKAVKVYKEALSNTYKYGRKAGLAKGLGLGSMHCVLFLSWSLLVWYVSVVVHKH 314
+ E K +Y ++L Y+ K G+ +++ S++ + + +V +
Sbjct: 904 VSLTREQKFETMYAQSLQIPYRNAMKKAHVFGITFSFTQAMMYFSYAAAFRFGAYLVTQQ 963
Query: 315 ISNGGESFTTMLNVVIAGLSLGQAAPDITAFIRAKAAAYPIFEMIERDTMSKASSKTGRK 374
+ +V +++GQ + + +A +A I +IE+ + S G K
Sbjct: 964 LMTFENVLLVFSAIVFGAMAVGQVSSFAPDYAKATVSASHIIRIIEKTPEIDSYSTQGLK 1023
Query: 375 LDKLSGHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFY 434
+ L G+++F V F YP+RP + + L++ G+ +ALVG SG GKSTV+ L+ERFY
Sbjct: 1024 PNMLEGNVQFSGVVFNYPTRPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFY 1083
Query: 435 EPLSGEILLDGNNIKGLDLKWLRQQIGLVNQEPALFATTIRENILYGKDD--ATMEEITR 492
+P++G + LDG IK L+++WLR Q+G+V+QEP LF +I ENI YG + + EEI R
Sbjct: 1084 DPMAGSVFLDGKEIKQLNVQWLRAQLGIVSQEPILFDCSIAENIAYGDNSRVVSYEEIVR 1143
Query: 493 AAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALD 552
AAK + FI +LP+++ T+VG++G QLSGGQKQRIAI+RA+V+ P ILLLDEATSALD
Sbjct: 1144 AAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEATSALD 1203
Query: 553 AESENSVQEALDRVMVGRTTVVVAHRLSTIRNADVIAVVQGRKIVKTGSHEELISNPNSA 612
ESE VQEALD+ GRT +V+AHRLSTI+NAD+I V+Q K+ + G+H++L++
Sbjct: 1204 TESEKVVQEALDKAREGRTCIVIAHRLSTIQNADLIVVIQNGKVKEHGTHQQLLAQ-KGI 1262
Query: 613 YAALVQLQEAASQQSNSS 630
Y ++V +Q A +
Sbjct: 1263 YFSMVSVQAGAKRSYVHH 1280
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* Length = 271 | Back alignment and structure |
|---|
Score = 472 bits (1218), Expect = e-160
Identities = 101/267 (37%), Positives = 151/267 (56%), Gaps = 4/267 (1%)
Query: 368 SSKTGRKLDKLSGHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVI 427
+ G ++F+DVSF YP+ P+V + + GK+ ALVG +GSGKSTV
Sbjct: 3 PLSGSLAPLNMKGLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVA 62
Query: 428 SLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIGLVNQEPALFATTIRENILYGK-DDAT 486
+L++ Y+P G++LLDG + D +L Q+ V QEP LF + RENI YG T
Sbjct: 63 ALLQNLYQPTGGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGLTRTPT 122
Query: 487 MEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDE 546
MEEIT A S A FIS P+ ++T+VGE G QLSGGQ+Q +A++RA+++ P +L+LD
Sbjct: 123 MEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDN 182
Query: 547 ATSALDAESENSVQEALDRVM--VGRTTVVVAHRLSTIRNADVIAVVQGRKIVKTGSHEE 604
ATSALDA ++ VQ L RT +++ +LS A I ++ + + G+H +
Sbjct: 183 ATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLSLAERAHHILFLKEGSVCEQGTHLQ 242
Query: 605 LISNPNSAYAALVQLQEAASQQSNSSQ 631
L+ Y ++V+ A S +
Sbjct: 243 LMER-GGCYRSMVEALAAPSDAAAHHH 268
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* Length = 271 | Back alignment and structure |
|---|
Score = 126 bits (320), Expect = 1e-32
Identities = 27/69 (39%), Positives = 40/69 (57%)
Query: 1008 GEELTNVEGTIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLIL 1067
N++G ++ + V F+YP+ P V + + + GK ALVG +GSGKSTV +L+
Sbjct: 7 SLAPLNMKGLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQ 66
Query: 1068 RFYDPTAGK 1076
Y PT GK
Sbjct: 67 NLYQPTGGK 75
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A Length = 582 | Back alignment and structure |
|---|
Score = 475 bits (1226), Expect = e-156
Identities = 179/600 (29%), Positives = 299/600 (49%), Gaps = 34/600 (5%)
Query: 33 KKQQQKRSVSLFK-LFAFADFYDYILMSLGSIGACVHGVSVPVFFIFFGKLINIIGLAYL 91
+ + F+ L+ + + + I ++ S L++
Sbjct: 2 HNDKDLSTWQTFRRLWPTIAPF-KAGLIVAGIALILNAASDTFMLSLLKPLLDDG----- 55
Query: 92 FPKTASHKVAKYSLDFVYLSVAILFSSWIEVSCWMYTGERQAAKMRMAYLRSMLNQDISL 151
F KT + L + L + +S+I C + + MR M+ ++
Sbjct: 56 FGKTDRSVLLWMPLVVIGLMILRGITSYISSYCISWVSGKVVMTMRRRLFGHMMGMPVAF 115
Query: 152 FDTEASTGEVISAITSDIIVVQDALSEKVGNFMHYISRFLGGFIIGFARVWQISLVTLSI 211
FD + STG ++S IT D V + S + + + +G FI+ F WQ+S++ + +
Sbjct: 116 FDKQ-STGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQLSIILVVL 174
Query: 212 VPLIALAGGMYAYVTIGLIARVRKSYVKA----GEI---AEEVIGNVRTVQAFAGEDKAV 264
P+++ + R R G++ AE+++ + V F G++
Sbjct: 175 APIVS-------IAIRVVSKRFRSISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVET 227
Query: 265 KVYKEALSNTYKYGRKAGLAKGLGLGSMHCVLFLSWSLLVWYVSV-VVHKHISNGG-ESF 322
K + + + G K A + + + L+ + +++ S V ++ G
Sbjct: 228 KRFDKVSNKMRLQGMKMVSASSISDPIIQLIASLALAFVLYAASFPSVMDSLTAGTITVV 287
Query: 323 TTMLNVVIAGL-SLGQAAPDITAFIRAKAAAYPIFEMIERDTMSKASSKTGRKLDKLSGH 381
+ + ++ L SL R AA +F ++ D+ + R +D+ +G
Sbjct: 288 FSSMIALMRPLKSLTNVNAQFQ---RGMAACQTLFAIL--DSEQEKDEGK-RVIDRATGD 341
Query: 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEI 441
+EF++V+F YP R A+ L IPAGK VALVG SGSGKST+ SLI RFY+ G I
Sbjct: 342 LEFRNVTFTYPGREVPAL-RNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHI 400
Query: 442 LLDGNNIKGLDLKWLRQQIGLVNQEPALFATTIRENILYGKDDA-TMEEITRAAKLSEAM 500
L+DG++++ L LR Q+ LV+Q LF T+ NI Y + + + E+I AA+++ AM
Sbjct: 401 LMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAM 460
Query: 501 SFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQ 560
FI+ + +T +GE G+ LSGGQ+QRIAI+RA++++ IL+LDEATSALD ESE ++Q
Sbjct: 461 DFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQ 520
Query: 561 EALDRVMVGRTTVVVAHRLSTIRNADVIAVVQGRKIVKTGSHEELISNPNSAYAALVQLQ 620
ALD + RT++V+AHRLSTI AD I VV+ IV+ G+H EL++ + YA L ++Q
Sbjct: 521 AALDELQKNRTSLVIAHRLSTIEQADEIVVVEDGIIVERGTHSELLAQ-HGVYAQLHKMQ 579
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A Length = 582 | Back alignment and structure |
|---|
Score = 193 bits (492), Expect = 2e-52
Identities = 71/394 (18%), Positives = 163/394 (41%), Gaps = 12/394 (3%)
Query: 686 KLYSMVRPDWTYGVCGTICAIIAGAQMPLFALGVSQALVAYYMDWDTTQREVKKITILFC 745
+L+ + P + I I+ A + L + D + + + ++
Sbjct: 15 RLWPTIAPFKAGLIVAGIALILNAASDTFMLSLLKPLLDDGFGKTDRSV--LLWMPLVVI 72
Query: 746 CAAVITVIVHAIEHLSFGIMGERLTLRVREKMFSAILSNEIGWFDEMDNSSSILASRLES 805
++ I I + ++ + +R ++F ++ + +FD+ S+ L SR+
Sbjct: 73 GLMILRGITSYISSYCISWVSGKVVMTMRRRLFGHMMGMPVAFFDK--QSTGTLLSRITY 130
Query: 806 DATLLRTIVVDRSTILIQNFGLVTASFVIAFILNWRITLVVVATYPLI--ISGHISEKLF 863
D+ + + +++ + F++ F +W++++++V P++ +S++
Sbjct: 131 DSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQLSIILVVLAPIVSIAIRVVSKR-- 188
Query: 864 FQGYGGNLSKAYLKANMLAAEAVSNIRTVAAFCSEDKVLELYSRELVEPSKRSFIRGQIA 923
F+ N+ + A + + + V F ++ + + + + + +
Sbjct: 189 FRSISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKMRLQGMKMVSAS 248
Query: 924 GIFYGISQFFIFSSYGLALWYGSVLMGKELASFKSVMKSFMVLIVTALA-MGETLALVPD 982
I I Q + L+ S + + ++ ++ + + +
Sbjct: 249 SISDPIIQLIASLALAFVLYAASFPSVMDSLTAGTIT-VVFSSMIALMRPLKSLTNVNAQ 307
Query: 983 LLKGNQMAASVFEVLDRKTQVIGDIGEELTNVEGTIELRGVHFSYPSRPEVVIFKDFNLK 1042
+G ++F +LD + + + + G +E R V F+YP R + ++ NLK
Sbjct: 308 FQRGMAACQTLFAILDSEQE-KDEGKRVIDRATGDLEFRNVTFTYPGREVPAL-RNINLK 365
Query: 1043 VRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGK 1076
+ AGK++ALVG+SGSGKST+ SLI RFYD G
Sbjct: 366 IPAGKTVALVGRSGSGKSTIASLITRFYDIDEGH 399
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} Length = 582 | Back alignment and structure |
|---|
Score = 465 bits (1200), Expect = e-152
Identities = 170/601 (28%), Positives = 296/601 (49%), Gaps = 35/601 (5%)
Query: 32 SKKQQQKRSVSLFKLFAFADFYDYILMSLGSIGACVHGVSVPVFFIFFGKLINIIGLAYL 91
S + + +L+ + Y + + +I ++ + L++
Sbjct: 2 SLHSDESNWQTFKRLWTYIRLY-KAGLVVSTIALVINAAADTYMISLLKPLLDEG----- 55
Query: 92 FPKTASHKVAKYSLDFVYLSVAILFSSWIEVSCWMYTGERQAAKMRMAYLRSMLNQDISL 151
F S+ + + L S + C + +MR ++ +
Sbjct: 56 FGNAESNFLRILPFMILGLMFVRGLSGFASSYCLSWVSGNVVMQMRRRLFNHFMHMPVRF 115
Query: 152 FDTEASTGEVISAITSDIIVVQDALSEKVGNFMHYISRFLGGFIIGFARVWQISLVTLSI 211
FD E STG ++S IT D V A S + + + + +G + F WQ+SLV + +
Sbjct: 116 FDQE-STGGLLSRITYDSEQVAGATSRALVSIVREGASIIGLLTLMFWNSWQLSLVLIVV 174
Query: 212 VPLIALAGGMYAYVTIGLIA-RVRKSYVKA----GEI---AEEVIGNVRTVQAFAGEDKA 263
P++A A I ++ R RK G + AE+++ + V ++ G++
Sbjct: 175 APVVAFA--------ISFVSKRFRKISRNMQTAMGHVTSSAEQMLKGHKVVLSYGGQEVE 226
Query: 264 VKVYKEALSNTYKYGRKAGLAKGLGLGSMHCVLFLSWSLLVWYVSV-VVHKHISNGG-ES 321
K + + ++ + K A+ + + + L+ +++ SV + ++ G
Sbjct: 227 RKRFDKVSNSMRQQTMKLVSAQSIADPVIQMIASLALFAVLFLASVDSIRAELTPGTFTV 286
Query: 322 FTTMLNVVIAGL-SLGQAAPDITAFIRAKAAAYPIFEMIERDTMSKASSKTGRKLDKLSG 380
+ + ++ L +L + R AA +F +++ +T + ++++G
Sbjct: 287 VFSAMFGLMRPLKALTSVTSEFQ---RGMAACQTLFGLMDLETERDNGKY---EAERVNG 340
Query: 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGE 440
++ KDV+F Y + A+ IP GK VALVG SGSGKST+ +L RFY+ SG
Sbjct: 341 EVDVKDVTFTYQGKEKPALSH-VSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGS 399
Query: 441 ILLDGNNIKGLDLKWLRQQIGLVNQEPALFATTIRENILYGKD-DATMEEITRAAKLSEA 499
I LDG++++ L LR+ LV+Q LF TI NI Y + + T E+I +AA+ + A
Sbjct: 400 ICLDGHDVRDYKLTNLRRHFALVSQNVHLFNDTIANNIAYAAEGEYTREQIEQAARQAHA 459
Query: 500 MSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSV 559
M FI N+P+ +T +GE G LSGGQ+QR+AI+RA++++ +L+LDEATSALD ESE ++
Sbjct: 460 MEFIENMPQGLDTVIGENGTSLSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAI 519
Query: 560 QEALDRVMVGRTTVVVAHRLSTIRNADVIAVVQGRKIVKTGSHEELISNPNSAYAALVQL 619
Q ALD + +T +V+AHRLSTI AD I VV +I++ G H +L++ + AYA L ++
Sbjct: 520 QAALDELQKNKTVLVIAHRLSTIEQADEILVVDEGEIIERGRHADLLAQ-DGAYAQLHRI 578
Query: 620 Q 620
Q
Sbjct: 579 Q 579
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} Length = 582 | Back alignment and structure |
|---|
Score = 186 bits (474), Expect = 5e-50
Identities = 63/394 (15%), Positives = 160/394 (40%), Gaps = 12/394 (3%)
Query: 686 KLYSMVRPDWTYGVCGTICAIIAGAQMPLFALGVSQALVAYYMDWDTTQREVKKITILFC 745
+L++ +R V TI +I A + L + + ++ ++ + +
Sbjct: 15 RLWTYIRLYKAGLVVSTIALVINAAADTYMISLLKPLLDEGFGNAESNF--LRILPFMIL 72
Query: 746 CAAVITVIVHAIEHLSFGIMGERLTLRVREKMFSAILSNEIGWFDEMDNSSSILASRLES 805
+ + + + +++R ++F+ + + +FD+ S+ L SR+
Sbjct: 73 GLMFVRGLSGFASSYCLSWVSGNVVMQMRRRLFNHFMHMPVRFFDQ--ESTGGLLSRITY 130
Query: 806 DATLLRTIVVDRSTILIQNFGLVTASFVIAFILNWRITLVVVATYPLI--ISGHISEKLF 863
D+ + +++ + + F +W+++LV++ P++ +S++
Sbjct: 131 DSEQVAGATSRALVSIVREGASIIGLLTLMFWNSWQLSLVLIVVAPVVAFAISFVSKR-- 188
Query: 864 FQGYGGNLSKAYLKANMLAAEAVSNIRTVAAFCSEDKVLELYSRELVEPSKRSFIRGQIA 923
F+ N+ A A + + + V ++ ++ + + + +++
Sbjct: 189 FRKISRNMQTAMGHVTSSAEQMLKGHKVVLSYGGQEVERKRFDKVSNSMRQQTMKLVSAQ 248
Query: 924 GIFYGISQFFIFSSYGLALWYGSVLMGKELASFKSVMKSFMVLIVTALAMGETLA-LVPD 982
I + Q + L+ SV + + + + + + L + +
Sbjct: 249 SIADPVIQMIASLALFAVLFLASVDSIRAELTPGTFT-VVFSAMFGLMRPLKALTSVTSE 307
Query: 983 LLKGNQMAASVFEVLDRKTQVIGDIGEELTNVEGTIELRGVHFSYPSRPEVVIFKDFNLK 1042
+G ++F ++D +T+ E V G ++++ V F+Y + + + +
Sbjct: 308 FQRGMAACQTLFGLMDLETERDNG-KYEAERVNGEVDVKDVTFTYQGKEKPAL-SHVSFS 365
Query: 1043 VRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGK 1076
+ GK++ALVG+SGSGKST+ +L RFYD +G
Sbjct: 366 IPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGS 399
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A Length = 578 | Back alignment and structure |
|---|
Score = 458 bits (1180), Expect = e-150
Identities = 176/589 (29%), Positives = 275/589 (46%), Gaps = 29/589 (4%)
Query: 45 KLFAFADFYDYILMSLGSIGACVHGVSVPVFFIFFGKLIN--IIGLAYLFPKTASHKVAK 102
+ F Y + I + + + I+ I A + H
Sbjct: 4 RYLQFVKPY-KYRIFATIIVGIIKFGIPMLIPLLIKYAIDGVINNHALTTDEKVHHLTIA 62
Query: 103 YSLDFVYLSVAILFSSWIEVSCWM-YTGERQAAKMRMAYLRSMLNQDISLFDTEASTGEV 161
+ + +I +T + +R + + G+V
Sbjct: 63 IGIALFIFVIVRPPIEFI-RQYLAQWTSNKILYDIRKKLYNHLQALSARFYA-NNQVGQV 120
Query: 162 ISAITSDIIVVQDALSEKVGNFMHYISRFLGGFIIGFARVWQISLVTLSIVPLIALAGGM 221
IS + +D+ +D + + N + I F +++L L I P
Sbjct: 121 ISRVINDVEQTKDFILTGLMNIWLDCITIIIALSIMFFLDVKLTLAALFIFPFYI----- 175
Query: 222 YAYVTIGLIARVRKSY----VKAGEI---AEEVIGNVRTVQAFAGEDKAVKVYKEALSNT 274
R+RK E+ E + + V++FA ED K + + +N
Sbjct: 176 --LTVYVFFGRLRKLTRERSQALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDKKNTNF 233
Query: 275 YKYGRKAGLAKGLGLGSMHCVLFLSWSLLVWY-VSVVVHKHISNGG-ESFTTMLNVVIAG 332
K +++ V + +++ + + I+ G +F L ++
Sbjct: 234 LTRALKHTRWNAYSFAAINTVTDIGPIIVIGVGAYLAISGSITVGTLAAFVGYLELLFG- 292
Query: 333 LSLGQAAPDITAFIRAKAAAYPIFEMIERDTMSKASSKTG-RKLDKLSGHIEFKDVSFCY 391
L + T ++ A+ +F++I D + G + ++ G I+ VSF Y
Sbjct: 293 -PLRRLVASFTTLTQSFASMDRVFQLI--DEDYDIKNGVGAQPIEIKQGRIDIDHVSFQY 349
Query: 392 PSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGL 451
+ I L I G+ VA VG SG GKST+I+LI RFY+ SG+IL+DG+NIK
Sbjct: 350 NDN-EAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDF 408
Query: 452 DLKWLRQQIGLVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFE 511
LR QIGLV Q+ LF+ T++ENIL G+ AT EE+ AAK++ A FI NLP+ ++
Sbjct: 409 LTGSLRNQIGLVQQDNILFSDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYD 468
Query: 512 TQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRT 571
T+VGERG++LSGGQKQR++I+R + NP IL+LDEATSALD ESE+ +QEALD + RT
Sbjct: 469 TEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSKDRT 528
Query: 572 TVVVAHRLSTIRNADVIAVVQGRKIVKTGSHEELISNPNSAYAALVQLQ 620
T++VAHRLSTI +AD I V++ IV+TG+H ELI+ AY L +Q
Sbjct: 529 TLIVAHRLSTITHADKIVVIENGHIVETGTHRELIAK-QGAYEHLYSIQ 576
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A Length = 578 | Back alignment and structure |
|---|
Score = 178 bits (453), Expect = 3e-47
Identities = 73/403 (18%), Positives = 152/403 (37%), Gaps = 21/403 (5%)
Query: 686 KLYSMVRPDWTYGVCGTICAIIAGAQMPLFALGVSQALVAYYMDWDTTQREVK-----KI 740
+ V+P I II L L + A+ + T E I
Sbjct: 4 RYLQFVKPYKYRIFATIIVGIIKFGIPMLIPLLIKYAIDGVINNHALTTDEKVHHLTIAI 63
Query: 741 TILFCCAAVITVIVHAIEHLSFGIMGERLTLRVREKMFSAILSNEIGWFDEMDNSSSILA 800
I ++ + I ++ +R+K+++ + + ++ +N +
Sbjct: 64 GIALFIFVIVRPPIEFIRQYLAQWTSNKILYDIRKKLYNHLQALSARFYA--NNQVGQVI 121
Query: 801 SRLESDATLLRTIVVDRSTILIQNFGLVTASFVIAFILNWRITLVVVATYPLII--SGHI 858
SR+ +D + ++ + + + + I F L+ ++TL + +P I
Sbjct: 122 SRVINDVEQTKDFILTGLMNIWLDCITIIIALSIMFFLDVKLTLAALFIFPFYILTVYVF 181
Query: 859 SEKLFFQGYGGNLSKAYLKANMLAAEAVSNIRTVAAFCSEDKVLELYSRELVEPSKRSFI 918
+L + S+A + E V I V +F ED + + + +
Sbjct: 182 FGRL--RKLTRERSQALAEVQGFLHERVQGISVVKSFAIEDNEAKNF-DKKNTNFLTRAL 238
Query: 919 RGQ-IAGIFYGISQFFIFSSYGLALWYGSVLMGKELASFKSVMKSFMVLIVTALA-MGET 976
+ + + + G+ L + + +F+ + +
Sbjct: 239 KHTRWNAYSFAAINTVTDIGPIIVIGVGAYLAISGSITV-GTLAAFVGYLELLFGPLRRL 297
Query: 977 LALVPDLLKGNQMAAS--VFEVLDRKTQVIGDIG-EELTNVEGTIELRGVHFSYPSRPEV 1033
+A L + A+ VF+++D + +G + + +G I++ V F Y
Sbjct: 298 VASFTTLTQS--FASMDRVFQLIDEDYDIKNGVGAQPIEIKQGRIDIDHVSFQYNDNEAP 355
Query: 1034 VIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGK 1076
++ KD NL + G+++A VG SG GKST+++LI RFYD T+G+
Sbjct: 356 IL-KDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQ 397
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* Length = 247 | Back alignment and structure |
|---|
Score = 438 bits (1128), Expect = e-147
Identities = 114/243 (46%), Positives = 163/243 (67%), Gaps = 1/243 (0%)
Query: 378 LSGHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPL 437
I F+++ F Y V I D L I G+++ +VG SGSGKST+ LI+RFY P
Sbjct: 4 HHHDITFRNIRFRYKPDSPV-ILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPE 62
Query: 438 SGEILLDGNNIKGLDLKWLRQQIGLVNQEPALFATTIRENILYGKDDATMEEITRAAKLS 497
+G++L+DG+++ D WLR+Q+G+V Q+ L +I +NI ++E++ AAKL+
Sbjct: 63 NGQVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLA 122
Query: 498 EAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESEN 557
A FIS L E + T VGE+G LSGGQ+QRIAI+RA+V NP IL+ DEATSALD ESE+
Sbjct: 123 GAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEH 182
Query: 558 SVQEALDRVMVGRTTVVVAHRLSTIRNADVIAVVQGRKIVKTGSHEELISNPNSAYAALV 617
+ + ++ GRT +++AHRLST++NAD I V++ KIV+ G H+EL+S P S Y+ L
Sbjct: 183 VIMRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLY 242
Query: 618 QLQ 620
QLQ
Sbjct: 243 QLQ 245
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* Length = 247 | Back alignment and structure |
|---|
Score = 104 bits (261), Expect = 6e-25
Identities = 24/64 (37%), Positives = 36/64 (56%), Gaps = 1/64 (1%)
Query: 1013 NVEGTIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDP 1072
+ I R + F Y V+ + NL ++ G+ + +VG+SGSGKST+ LI RFY P
Sbjct: 3 HHHHDITFRNIRFRYKPDSPVI-LDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIP 61
Query: 1073 TAGK 1076
G+
Sbjct: 62 ENGQ 65
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 Length = 243 | Back alignment and structure |
|---|
Score = 415 bits (1069), Expect = e-138
Identities = 111/245 (45%), Positives = 162/245 (66%), Gaps = 4/245 (1%)
Query: 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEI 441
+ + V F Y + + I+A G SG GKST+ SL+ERFY+P +GEI
Sbjct: 2 LSARHVDFAYDDSEQI--LRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEI 59
Query: 442 LLDGNNIKGLDLKWLRQQIGLVNQEPALFATTIRENILYGKD-DATMEEITRAAKLSEAM 500
+DG I + L+ R QIG V+Q+ A+ A TIREN+ YG + D T E++ + L+ A
Sbjct: 60 TIDGQPIDNISLENWRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFAR 119
Query: 501 SFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQ 560
SF+ N+P++ T+VGERG+++SGGQ+QR+AI+RA ++NP IL+LDEAT++LD+ESE+ VQ
Sbjct: 120 SFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQ 179
Query: 561 EALDRVMVGRTTVVVAHRLSTIRNADVIAVVQGRKIVKTGSHEELISNPNSAYAALVQLQ 620
+ALD +M GRTT+V+AHRLSTI +AD I ++ +I +G H EL++ + YA V Q
Sbjct: 180 KALDSLMKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVAT-HPLYAKYVSEQ 238
Query: 621 EAASQ 625
Q
Sbjct: 239 LTVGQ 243
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 Length = 243 | Back alignment and structure |
|---|
Score = 99.5 bits (249), Expect = 2e-23
Identities = 22/59 (37%), Positives = 34/59 (57%), Gaps = 2/59 (3%)
Query: 1018 IELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGK 1076
+ R V F+Y ++ +D + + + +A G SG GKST+ SL+ RFY PTAG+
Sbjct: 2 LSARHVDFAYDDSEQI--LRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGE 58
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} Length = 260 | Back alignment and structure |
|---|
Score = 395 bits (1016), Expect = e-130
Identities = 105/258 (40%), Positives = 164/258 (63%), Gaps = 2/258 (0%)
Query: 368 SSKTGRKLDKLSGHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVI 427
S K +IEF DV+F YP + + IP+G ALVG +GSGKST+
Sbjct: 4 SFSLTSHEKKFGVNIEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIA 63
Query: 428 SLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIGLVNQEPALFATTIRENILYGKDDATM 487
L+ RFY+ G+I + G N+ + +R IG+V Q+ LF TI+ NILYGK DAT
Sbjct: 64 KLLYRFYDA-EGDIKIGGKNVNKYNRNSIRSIIGIVPQDTILFNETIKYNILYGKLDATD 122
Query: 488 EEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEA 547
EE+ +A K ++ FI LP++++T VG +G++LSGG++QRIAI+R ++K+P I++ DEA
Sbjct: 123 EEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDPKIVIFDEA 182
Query: 548 TSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRNADVIAVVQGRKIVKTGSHEELIS 607
TS+LD+++E Q+A++ + RT +++AHRLSTI +A+ I ++ KIV+ G+H++L+
Sbjct: 183 TSSLDSKTEYLFQKAVEDLRKNRTLIIIAHRLSTISSAESIILLNKGKIVEKGTHKDLLK 242
Query: 608 NPNSAYAALVQLQEAASQ 625
N YA + +Q +
Sbjct: 243 L-NGEYAEMWNMQSGGND 259
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} Length = 260 | Back alignment and structure |
|---|
Score = 101 bits (253), Expect = 8e-24
Identities = 25/64 (39%), Positives = 33/64 (51%)
Query: 1010 ELTNVEGTIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRF 1069
IE V+FSYP + K N + +G + ALVG +GSGKST+ L+ RF
Sbjct: 10 HEKKFGVNIEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRF 69
Query: 1070 YDPT 1073
YD
Sbjct: 70 YDAE 73
|
| >3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 598 | Back alignment and structure |
|---|
Score = 381 bits (981), Expect = e-120
Identities = 178/599 (29%), Positives = 301/599 (50%), Gaps = 34/599 (5%)
Query: 33 KKQQQKRSVSLFKLFAFADFY--DYILMSLGSIGACVHGVSVPVFFIFFGKLINIIGLAY 90
K + + +L +L + + I++ + + + GV P GK I+++
Sbjct: 15 KPALKNPTATLRRLLGYLRPHTFTLIMVFVFVTVSSILGVLSP---YLIGKTIDVV---- 67
Query: 91 LFPKTASHKVAKYSLDFVYLSVAILFSSWIEVSCWMYTGERQAAKMRMAYLRSMLNQDIS 150
F + +Y L + W++ + + ++R + +
Sbjct: 68 -FVPRRFDLLPRYMLILGTIYALTSLLFWLQGKIMLTLSQDVVFRLRKELFEKLQRVPVG 126
Query: 151 LFDTEASTGEVISAITSDIIVVQDALSEKVGNFMHYISRFLGGFIIGFARVWQISLVTLS 210
FD G++IS + +D+ + + L + F I G I+ F +SLVTLS
Sbjct: 127 FFDRT-PHGDIISRVINDVDNINNVLGNSIIQFFSGIVTLAGAVIMMFRVNVILSLVTLS 185
Query: 211 IVPLIALAGGMYAYVTIGLIARVRKSYVK----AGEI---AEEVIGNVRTVQAFAGEDKA 263
IVPL L +T + ++ RK + + G++ EE I + ++ F E+K
Sbjct: 186 IVPLTVL-------ITQIVSSQTRKYFYENQRVLGQLNGIIEEDISGLTVIKLFTREEKE 238
Query: 264 VKVYKEALSNTYKYGRKAGLAKGLGLGSMHCVLFLSWSLLVWYVSV-VVHKHISNGG-ES 321
++ + + K G KA + G+ M+ V L ++L+ + + I+ G +
Sbjct: 239 MEKFDRVNESLRKVGTKAQIFSGVLPPLMNMVNNLGFALISGFGGWLALKDIITVGTIAT 298
Query: 322 FTTMLNVVIAGLSLGQAAPDITAFIRAKAAAYPIFEMIERDTMSKASSKTGRKLDKLSGH 381
F L+ + + A A+A IFE++ D + +L ++ G
Sbjct: 299 FIGYSRQFTRPLN--ELSNQFNMIQMALASAERIFEIL--DLEEEKDDPDAVELREVRGE 354
Query: 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEI 441
IEFK+V F Y + I G+ VALVG +GSGK+T+++L+ RFY+ G+I
Sbjct: 355 IEFKNVWFSY--DKKKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQI 412
Query: 442 LLDGNNIKGLDLKWLRQQIGLVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMS 501
L+DG +I+ + LR IG+V Q+ LF+TT++EN+ YG AT EEI AAKL+ +
Sbjct: 413 LVDGIDIRKIKRSSLRSSIGIVLQDTILFSTTVKENLKYGNPGATDEEIKEAAKLTHSDH 472
Query: 502 FISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQE 561
FI +LPE +ET + + G LS GQ+Q +AI+RA + NP IL+LDEATS +D ++E S+Q
Sbjct: 473 FIKHLPEGYETVLTDNGEDLSQGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQA 532
Query: 562 ALDRVMVGRTTVVVAHRLSTIRNADVIAVVQGRKIVKTGSHEELISNPNSAYAALVQLQ 620
A+ ++M G+T++++AHRL+TI+NAD+I V++ +IV+ G H+ELI Y L Q
Sbjct: 533 AMWKLMEGKTSIIIAHRLNTIKNADLIIVLRDGEIVEMGKHDELIQK-RGFYYELFTSQ 590
|
| >3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 598 | Back alignment and structure |
|---|
Score = 135 bits (343), Expect = 3e-33
Identities = 78/412 (18%), Positives = 171/412 (41%), Gaps = 42/412 (10%)
Query: 683 SAIKLYSMVRPDWTYGVCGTICAIIAGAQMPLFALGVSQALVAYYMDWDTTQREVKKITI 742
+ +L +RP + + ++ L + + + ++ + + +
Sbjct: 24 TLRRLLGYLRPHTFTLIMVFVFVTVSSILGVLSPYLIGKTIDVVFVPRRFDL--LPRYML 81
Query: 743 LFCCAAVITVIVHAIEHLSFGIMGERLTLRVREKMFSAILSNEIGWFDEMDNSSSILASR 802
+ +T ++ ++ + + + R+R+++F + +G+FD + SR
Sbjct: 82 ILGTIYALTSLLFWLQGKIMLTLSQDVVFRLRKELFEKLQRVPVGFFDR--TPHGDIISR 139
Query: 803 LESDATLLRTIVVDRSTILIQNFGLVTASFVIAFILNWRITLVVVATYPL--IISGHI-- 858
+ +D + ++ + + + ++ F +N ++LV ++ PL +I+ +
Sbjct: 140 VINDVDNINNVLGNSIIQFFSGIVTLAGAVIMMFRVNVILSLVTLSIVPLTVLITQIVSS 199
Query: 859 -SEKLFF--QGYGGNLSKAYLKANMLAAEAVSNIRTVAAFCSEDKVLELYSRELVEPSKR 915
+ K F+ Q G L N + E +S + + F E+K +E + + E ++
Sbjct: 200 QTRKYFYENQRVLGQL-------NGIIEEDISGLTVIKLFTREEKEMEKF-DRVNESLRK 251
Query: 916 SFIRGQ-IAGIFYGISQFFIFSSYGLALWYGSVLMGK------ELASFKSVMKSFMVLIV 968
+ Q +G+ + + L +G L K +A+F + F +
Sbjct: 252 VGTKAQIFSGVLPPLMNMVNNLGFALISGFGGWLALKDIITVGTIATFIGYSRQFTRPLN 311
Query: 969 TALAMGETLALVPDLLKGNQMAAS----VFEVLDRKTQVIGDIGEELTNVEGTIELRGVH 1024
+ QMA + +FE+LD + + EL V G IE + V
Sbjct: 312 ELSNQFNMI----------QMALASAERIFEILDLEEEKDDPDAVELREVRGEIEFKNVW 361
Query: 1025 FSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGK 1076
FSY + + KD ++ G+ +ALVG +GSGK+T+++L++RFYD G+
Sbjct: 362 FSY--DKKKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQ 411
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* Length = 306 | Back alignment and structure |
|---|
Score = 358 bits (922), Expect = e-116
Identities = 117/266 (43%), Positives = 162/266 (60%), Gaps = 5/266 (1%)
Query: 373 RKLDKLSGHIEFKDVSFCY-PSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIE 431
L G IEF++V F Y R + G+ +ALVG SG+GKST++ L+
Sbjct: 45 GPLRFQKGRIEFENVHFSYADGRE---TLQDVSFTVMPGQTLALVGPSGAGKSTILRLLF 101
Query: 432 RFYEPLSGEILLDGNNIKGLDLKWLRQQIGLVNQEPALFATTIRENILYGKDDATMEEIT 491
RFY+ SG I +DG +I + LR IG+V Q+ LF TI +NI YG+ A +E+
Sbjct: 102 RFYDISSGCIRIDGQDISQVTQASLRSHIGVVPQDTVLFNDTIADNIRYGRVTAGNDEVE 161
Query: 492 RAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSAL 551
AA+ + I PE + TQVGERG++LSGG+KQR+AI+R I+K P I+LLDEATSAL
Sbjct: 162 AAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGGEKQRVAIARTILKAPGIILLDEATSAL 221
Query: 552 DAESENSVQEALDRVMVGRTTVVVAHRLSTIRNADVIAVVQGRKIVKTGSHEELISNPNS 611
D +E ++Q +L +V RTT+VVAHRLST+ NAD I V++ IV+ G HE L+S
Sbjct: 222 DTSNERAIQASLAKVCANRTTIVVAHRLSTVVNADQILVIKDGCIVERGRHEALLSR-GG 280
Query: 612 AYAALVQLQEAASQQSNSSQCPNMGR 637
YA + QLQ+ + S ++ M R
Sbjct: 281 VYADMWQLQQGQEETSEDTKPQTMER 306
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* Length = 306 | Back alignment and structure |
|---|
Score = 98.4 bits (246), Expect = 2e-22
Identities = 35/86 (40%), Positives = 51/86 (59%), Gaps = 5/86 (5%)
Query: 993 VFEVLDRKTQVIGDIG-EELTNVEGTIELRGVHFSY-PSRPEVVIFKDFNLKVRAGKSMA 1050
+F++L +T+V G L +G IE VHFSY R +D + V G+++A
Sbjct: 28 MFDLLKEETEVKDLPGAGPLRFQKGRIEFENVHFSYADGRE---TLQDVSFTVMPGQTLA 84
Query: 1051 LVGQSGSGKSTVLSLILRFYDPTAGK 1076
LVG SG+GKST+L L+ RFYD ++G
Sbjct: 85 LVGPSGAGKSTILRLLFRFYDISSGC 110
|
| >3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 587 | Back alignment and structure |
|---|
Score = 331 bits (852), Expect = e-102
Identities = 132/478 (27%), Positives = 243/478 (50%), Gaps = 22/478 (4%)
Query: 157 STGEVISAITSDIIVVQDALSEKVGNFMHYISR----FLGGFIIGFARVWQISLVTLSIV 212
T +I+ +T+D+ +Q+ V + + R F+GG ++ + ++S V + ++
Sbjct: 118 HTSSLITRLTNDVTQLQNL----VMMLLRIVVRAPLLFVGGIVMAVSINVKLSSVLIFLI 173
Query: 213 PLIALAGGMYAYVTIGLIARVRKSYVKAGEIAEEVIGNVRTVQAFAGEDKAVKVYKEALS 272
P I L L ++++S + + E + VR V+AF E+ + +++A
Sbjct: 174 PPIVLLFVWLTKKGNPLFRKIQESTDEVNRVVRENLLGVRVVRAFRREEYENENFRKANE 233
Query: 273 NTYKYGRKAGLAKGLGLGSMHCVLFLSWSLLVWYVSVVVHKHISNGGE--SFTTMLNVVI 330
+ + A L ++ + ++W+ V+V + G ++T L ++
Sbjct: 234 SLRRSIISAFSLIVFALPLFIFIVNMGMIAVLWFGGVLVRNNQMEIGSIMAYTNYLMQIM 293
Query: 331 AGLSLGQAAPDITAFIRAKAAAYPIFEMIERDTMSKASSKTGRKLDKLSGHIEFKDVSFC 390
SL + +RA A+A + E++ + + L + G + F++V F
Sbjct: 294 --FSLMMIGNILNFIVRASASAKRVLEVLNEKP-AIEEADNALALPNVEGSVSFENVEFR 350
Query: 391 YPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKG 450
Y D + + G +VA++G +GSGKST+++LI R +P G + +D +++
Sbjct: 351 YFENTDPVLSG-VNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRT 409
Query: 451 LDLKWLRQQIGLVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERF 510
+ LK LR I V QE LF+ TI+EN+ +G++DAT +EI AAK+++ FI +LPE +
Sbjct: 410 VKLKDLRGHISAVPQETVLFSGTIKENLKWGREDATDDEIVEAAKIAQIHDFIISLPEGY 469
Query: 511 ETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGR 570
+++V G SGGQKQR++I+RA+VK P +L+LD+ TS++D +E + + L R G
Sbjct: 470 DSRVERGGRNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYTKGC 529
Query: 571 TTVVVAHRLSTIRNADVIAVVQGRKIVKTGSHEELISNPNSAYAALVQLQE-AASQQS 627
TT ++ ++ T AD I V+ K+ G+H+EL+ + Y +E SQ
Sbjct: 530 TTFIITQKIPTALLADKILVLHEGKVAGFGTHKELLEH-CKPY------REIYESQFG 580
|
| >3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 587 | Back alignment and structure |
|---|
Score = 114 bits (287), Expect = 2e-26
Identities = 75/315 (23%), Positives = 141/315 (44%), Gaps = 24/315 (7%)
Query: 773 VREKMFSAILS---NEIGWFDEMDNSSSILASRLESDATLLRTIVVDRSTILIQNFGLVT 829
+R +F +LS + + F +S L +RL +D T L+ +V+ I+++ L
Sbjct: 98 LRRDLFRKVLSFSISNVNRF-----HTSSLITRLTNDVTQLQNLVMMLLRIVVRAPLLFV 152
Query: 830 ASFVIAFILNWRITLVVVATYPLIISG-----HISEKLFFQGYGGNLSKAYLKANMLAAE 884
V+A +N +++ V++ P I+ LF + ++ + N + E
Sbjct: 153 GGIVMAVSINVKLSSVLIFLIPPIVLLFVWLTKKGNPLF-----RKIQESTDEVNRVVRE 207
Query: 885 AVSNIRTVAAFCSEDKVLELYSRELVEPSKRSFIRGQIAGIFYGISQFFIFSSYGLALWY 944
+ +R V AF E+ E + + + + + F + LW+
Sbjct: 208 NLLGVRVVRAFRREEYENENFRKANESLRRSIISAFSLIVFALPLFIFIVNMGMIAVLWF 267
Query: 945 GSVLMGKELASFKSVMK--SFMVLIVTALAMGETLALVPDLLKGNQMAASVFEVLDRKTQ 1002
G VL+ S+M ++++ I+ +L M + +++ + A V EVL+ K
Sbjct: 268 GGVLVRNNQMEIGSIMAYTNYLMQIMFSLMMIGNILNF--IVRASASAKRVLEVLNEKPA 325
Query: 1003 VI-GDIGEELTNVEGTIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKST 1061
+ D L NVEG++ V F Y + V+ N V+ G +A++G++GSGKST
Sbjct: 326 IEEADNALALPNVEGSVSFENVEFRYFENTDPVL-SGVNFSVKPGSLVAVLGETGSGKST 384
Query: 1062 VLSLILRFYDPTAGK 1076
+++LI R DP G+
Sbjct: 385 LMNLIPRLIDPERGR 399
|
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} Length = 390 | Back alignment and structure |
|---|
Score = 198 bits (504), Expect = 9e-56
Identities = 70/287 (24%), Positives = 120/287 (41%), Gaps = 9/287 (3%)
Query: 380 GHIEFKDVSFCYPSRPD-VAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLS 438
G + KD++ Y AI + I G+ V L+G +GSGKST++S R
Sbjct: 18 GQMTVKDLTAKY--TEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNT-E 74
Query: 439 GEILLDGNNIKGLDLKWLRQQIGLVNQEPALFATTIRENILYGKDDATMEEITRAAKLSE 498
GEI +DG + + L+ R+ G++ Q+ +F+ T R+N L + +EI + A
Sbjct: 75 GEIQIDGVSWDSITLEQWRKAFGVIPQKVFIFSGTFRKN-LDPNAAHSDQEIWKVADEVG 133
Query: 499 AMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENS 558
S I P + + + + G LS G KQ + ++R+++ ILLLDE ++ LD +
Sbjct: 134 LRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQI 193
Query: 559 VQEALDRVMVGRTTVVVAHRLSTIRNADVIAVVQGRKIVKTGSHEELISNPNSAYAALVQ 618
++ L + T ++ R+ + D V++ K+ + S EL P + A
Sbjct: 194 IRRTLKQAFADCTVILCEARIEAMLECDQFLVIEENKVRQYDSILELYHYPADRFVAGFI 253
Query: 619 LQEAASQQSNSSQCPNMGRPLSIKFSRELSGTRTSFGASFRSEKESV 665
S + N + R S V
Sbjct: 254 ----GSPKMNFLPVKVTATAIDQVQVELPMPNRQQVWLPVESRDVQV 296
|
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} Length = 390 | Back alignment and structure |
|---|
Score = 48.9 bits (117), Expect = 6e-06
Identities = 16/59 (27%), Positives = 31/59 (52%), Gaps = 3/59 (5%)
Query: 1015 EGTIELRGVHFSYPSRPE-VVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDP 1072
G + ++ + Y I ++ + + G+ + L+G++GSGKST+LS LR +
Sbjct: 17 GGQMTVKDLTAKY--TEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNT 73
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} Length = 263 | Back alignment and structure |
|---|
Score = 165 bits (420), Expect = 4e-46
Identities = 49/244 (20%), Positives = 95/244 (38%), Gaps = 24/244 (9%)
Query: 382 IEFKDVSFCYPSRP-DVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGE 440
I+ K+V + + + L++ G+ V ++G +GSGK+T++ I P SG
Sbjct: 2 IQLKNVGITLSGKGYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGL-LPYSGN 59
Query: 441 ILLDGNNIKGLDLKWLRQQIGLVNQEPALFA--TTIRENILYGKDDATMEEITRAAKLSE 498
I ++G ++ + R I P + T+ + + ++ ++ E
Sbjct: 60 IFINGMEVRKI-----RNYIRYSTNLPEAYEIGVTVNDIVYLYEELKGLDR----DLFLE 110
Query: 499 AMSFISNLPERFETQVGERGI-QLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESEN 557
+ + L E R + +LS GQ + S A+ P I+ LDE +DA +
Sbjct: 111 MLKAL-KLGEEIL----RRKLYKLSAGQSVLVRTSLALASQPEIVGLDEPFENVDAARRH 165
Query: 558 SVQEALDRVMVGRTTVVVAHRLST-IRNADVIAVV-QGRKIVKTGSHEELISNPNSAYAA 615
+ + G+ ++V H L + A G ++ S EL+ +
Sbjct: 166 VISRYIKE--YGKEGILVTHELDMLNLYKEYKAYFLVGNRLQGPISVSELLESSIVEGER 223
Query: 616 LVQL 619
L
Sbjct: 224 NDAL 227
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} Length = 263 | Back alignment and structure |
|---|
Score = 54.7 bits (132), Expect = 4e-08
Identities = 18/60 (30%), Positives = 33/60 (55%), Gaps = 3/60 (5%)
Query: 1018 IELRGVHFSYPSRP-EVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGK 1076
I+L+ V + + E ++ NL+V G+ + ++G +GSGK+T+L I P +G
Sbjct: 2 IQLKNVGITLSGKGYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-PYSGN 59
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A Length = 229 | Back alignment and structure |
|---|
Score = 160 bits (406), Expect = 2e-44
Identities = 59/241 (24%), Positives = 116/241 (48%), Gaps = 21/241 (8%)
Query: 379 SGHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLS 438
+ + ++V+ + + D I G+++A+ G +G+GK++++ +I EP
Sbjct: 4 TTEVVMENVTAFWEEGGTPVLKD-INFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSE 62
Query: 439 GEILLDGNNIKGLDLKWLRQQIGLVNQEPALFATTIRENILYGK--DDATMEEITRAAKL 496
G+I G I +Q + TI+ENI++G D+ + +A +L
Sbjct: 63 GKIKHSGR-------------ISFCSQFSWIMPGTIKENIIFGVSYDEYRYRSVIKACQL 109
Query: 497 SEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESE 556
E IS E+ +GE GI LSGGQ+ RI+++RA+ K+ + LLD LD +E
Sbjct: 110 EED---ISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTE 166
Query: 557 NSV-QEALDRVMVGRTTVVVAHRLSTIRNADVIAVVQGRKIVKTGSHEELISNPNSAYAA 615
+ + + ++M +T ++V ++ ++ AD I ++ G+ EL + +++
Sbjct: 167 KEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQNL-QPDFSS 225
Query: 616 L 616
Sbjct: 226 K 226
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A Length = 229 | Back alignment and structure |
|---|
Score = 53.7 bits (130), Expect = 7e-08
Identities = 17/62 (27%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
Query: 1015 EGTIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTA 1074
+ + V + V+ KD N K+ G+ +A+ G +G+GK+++L +I+ +P+
Sbjct: 4 TTEVVMENVTAFWEEGGTPVL-KDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSE 62
Query: 1075 GK 1076
GK
Sbjct: 63 GK 64
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} Length = 237 | Back alignment and structure |
|---|
Score = 159 bits (404), Expect = 3e-44
Identities = 69/258 (26%), Positives = 128/258 (49%), Gaps = 31/258 (12%)
Query: 380 GHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSG 439
I ++ +F + + IP G +VA+VG G GKS+++S + + + G
Sbjct: 2 NSITVRNATFTWARSDPPTLNG-ITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEG 60
Query: 440 EILLDGNNIKGLDLKWLRQQIGLVNQEPALFATTIRENILYGK--DDATMEEITRAAKLS 497
+ + G+ + V Q+ + ++RENIL+G ++ + +A L
Sbjct: 61 HVAIKGS-------------VAYVPQQAWIQNDSLRENILFGCQLEEPYYRSVIQACALL 107
Query: 498 EAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESEN 557
+ LP T++GE+G+ LSGGQKQR++++RA+ N I L D+ SA+DA
Sbjct: 108 PD---LEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAH--- 161
Query: 558 SVQEAL-DRVMV------GRTTVVVAHRLSTIRNADVIAVVQGRKIVKTGSHEELISNPN 610
V + + + V+ +T ++V H +S + DVI V+ G KI + GS++EL++ +
Sbjct: 162 -VGKHIFENVIGPKGMLKNKTRILVTHSMSYLPQVDVIIVMSGGKISEMGSYQELLAR-D 219
Query: 611 SAYAALVQLQEAASQQSN 628
A+A ++ + +
Sbjct: 220 GAFAEFLRTYASHHHHHH 237
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} Length = 237 | Back alignment and structure |
|---|
Score = 51.8 bits (125), Expect = 3e-07
Identities = 17/61 (27%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
Query: 1016 GTIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAG 1075
+I +R F++ + + G +A+VGQ G GKS++LS +L D G
Sbjct: 2 NSITVRNATFTWARSDPPTL-NGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEG 60
Query: 1076 K 1076
Sbjct: 61 H 61
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* Length = 290 | Back alignment and structure |
|---|
Score = 153 bits (388), Expect = 2e-41
Identities = 64/276 (23%), Positives = 122/276 (44%), Gaps = 26/276 (9%)
Query: 368 SSKTGRKLDKLSGHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVI 427
+ RK + F + S + I G+++A+ G +G+GK++++
Sbjct: 27 QNNNNRKTSNGDDSLSFSNFSLLGT-----PVLKDINFKIERGQLLAVAGSTGAGKTSLL 81
Query: 428 SLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIGLVNQEPALFATTIRENILYGK--DDA 485
+I EP G+I G I +Q + TI+ENI+ G D+
Sbjct: 82 MMIMGELEPSEGKIKHSGR-------------ISFCSQNSWIMPGTIKENII-GVSYDEY 127
Query: 486 TMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLD 545
+ +A +L E IS E+ +GE GI LSGGQ+ RI+++RA+ K+ + LLD
Sbjct: 128 RYRSVIKACQLEED---ISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLD 184
Query: 546 EATSALDAESENSV-QEALDRVMVGRTTVVVAHRLSTIRNADVIAVVQGRKIVKTGSHEE 604
LD +E + + + ++M +T ++V ++ ++ AD I ++ G+ E
Sbjct: 185 SPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSE 244
Query: 605 LISNPNSAYAALVQLQEAASQQSNSSQCPNMGRPLS 640
L + +++ + ++ Q S + + L
Sbjct: 245 LQNL-RPDFSSKLMGCDSFDQFSAERRNSILTETLH 279
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* Length = 290 | Back alignment and structure |
|---|
Score = 48.1 bits (115), Expect = 7e-06
Identities = 19/83 (22%), Positives = 40/83 (48%)
Query: 994 FEVLDRKTQVIGDIGEELTNVEGTIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVG 1053
+ ++ + N + + + FS S + KD N K+ G+ +A+ G
Sbjct: 12 AFWEEGFGELFEKAKQNNNNRKTSNGDDSLSFSNFSLLGTPVLKDINFKIERGQLLAVAG 71
Query: 1054 QSGSGKSTVLSLILRFYDPTAGK 1076
+G+GK+++L +I+ +P+ GK
Sbjct: 72 STGAGKTSLLMMIMGELEPSEGK 94
|
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C Length = 366 | Back alignment and structure |
|---|
Score = 153 bits (388), Expect = 1e-40
Identities = 71/280 (25%), Positives = 141/280 (50%), Gaps = 20/280 (7%)
Query: 382 IEFKDVSFCYPSR-PDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGE 440
I+ +++ + + + L +PAG+I ++G SG+GKST+I + P G
Sbjct: 25 IKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGS 84
Query: 441 ILLDGNNIKGLD---LKWLRQQIGLVNQEPALFAT-TIRENILYGKDDATMEEITRAAKL 496
+L+DG + L L R+QIG++ Q L ++ T+ N+ + + ++
Sbjct: 85 VLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRV 144
Query: 497 SEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESE 556
+E +S + L ++ ++ LSGGQKQR+AI+RA+ NP +LL D+ATSALD +
Sbjct: 145 TELLSLV-GLGDKHDSYPS----NLSGGQKQRVAIARALASNPKVLLCDQATSALDPATT 199
Query: 557 NSVQEALDRV--MVGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELISNPNSAY 613
S+ E L + +G T +++ H + ++ D +AV+ ++++ + E+ S+P +
Sbjct: 200 RSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVFSHPKTPL 259
Query: 614 A-ALV------QLQEAASQQSNSSQCPNMGRPLSIKFSRE 646
A + + E ++ + + L ++F+ +
Sbjct: 260 AQKFIQSTLHLDIPEDYQERLQAEPFTDCVPMLRLEFTGQ 299
|
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C Length = 366 | Back alignment and structure |
|---|
Score = 46.9 bits (112), Expect = 2e-05
Identities = 16/60 (26%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Query: 1018 IELRGVHFSYPSR-PEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGK 1076
I+L + + + + +L V AG+ ++G SG+GKST++ + PT G
Sbjct: 25 IKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGS 84
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} Length = 266 | Back alignment and structure |
|---|
Score = 144 bits (366), Expect = 8e-39
Identities = 66/247 (26%), Positives = 120/247 (48%), Gaps = 17/247 (6%)
Query: 382 IEFKDVSFCYPSRP--DVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSG 439
IE +VS + + + L I G+ + + G +GSGKST++ ++ EP SG
Sbjct: 3 IEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSG 62
Query: 440 EILLDGNNIKGLDLKWLRQQIGLVNQEPA--LFATTIRENILYG-KDDATMEEITRAAKL 496
++L DG K +R+ IG+ Q P FA + + + + K+ + K
Sbjct: 63 DVLYDGERKK---GYEIRRNIGIAFQYPEDQFFAERVFDEVAFAVKNFYPDRDPVPLVK- 118
Query: 497 SEAMSFISNLPERFETQVGERG-IQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAES 555
+AM F+ + F+ +R LSGG+K+R+AI+ IV P IL+LDE LD E
Sbjct: 119 -KAMEFVGLDFDSFK----DRVPFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREG 173
Query: 556 ENSVQEALDRV-MVGRTTVVVAHRLSTI-RNADVIAVVQGRKIVKTGSHEELISNPNSAY 613
+ + +++ +G+T ++++H + T+ + D + V++ K V G+ E + + +
Sbjct: 174 KTDLLRIVEKWKTLGKTVILISHDIETVINHVDRVVVLEKGKKVFDGTRMEFLEKYDPRF 233
Query: 614 AALVQLQ 620
L
Sbjct: 234 FTSKMLV 240
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} Length = 266 | Back alignment and structure |
|---|
Score = 55.7 bits (135), Expect = 2e-08
Identities = 17/61 (27%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
Query: 1018 IELRGVHFSYPSRP--EVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAG 1075
IE+ V + E ++ +L + G+ + + G +GSGKST+L ++ +PT+G
Sbjct: 3 IEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSG 62
Query: 1076 K 1076
Sbjct: 63 D 63
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} Length = 279 | Back alignment and structure |
|---|
Score = 143 bits (364), Expect = 2e-38
Identities = 52/245 (21%), Positives = 105/245 (42%), Gaps = 27/245 (11%)
Query: 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEI 441
I+ + + I K I G L G +G+GK+T+++++ + SG +
Sbjct: 22 IQLDQIGRMKQGKT---ILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTV 78
Query: 442 LLDGNNI--KGLDLKWLRQQIGLVNQEPAL---FATTIRENILYGKDDA-------TMEE 489
L G G + +RQ IG V+ + + ++ G + E
Sbjct: 79 NLFGKMPGKVGYSAETVRQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEI 138
Query: 490 ITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATS 549
A +L + + + + + +G LS G+KQR+ I+RA++ P +L+LDE +
Sbjct: 139 RNEAHQLLKLV----GMSAKAQQYIG----YLSTGEKQRVMIARALMGQPQVLILDEPAA 190
Query: 550 ALDAESENSVQEALDRVM---VGRTTVVVAHRLSTIRNA-DVIAVVQGRKIVKTGSHEEL 605
LD + S+ LD + + V H + I I +++ + ++ G+ E++
Sbjct: 191 GLDFIARESLLSILDSLSDSYPTLAMIYVTHFIEEITANFSKILLLKDGQSIQQGAVEDI 250
Query: 606 ISNPN 610
+++ N
Sbjct: 251 LTSEN 255
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} Length = 279 | Back alignment and structure |
|---|
Score = 62.6 bits (153), Expect = 1e-10
Identities = 14/59 (23%), Positives = 29/59 (49%), Gaps = 3/59 (5%)
Query: 1018 IELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGK 1076
I+L + + I K + ++ G L G +G+GK+T+L+++ + T+G
Sbjct: 22 IQLDQIGRMKQGKT---ILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGT 77
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} Length = 275 | Back alignment and structure |
|---|
Score = 143 bits (363), Expect = 3e-38
Identities = 58/241 (24%), Positives = 119/241 (49%), Gaps = 26/241 (10%)
Query: 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEI 441
++ +++++ Y ++I G++ A++GG+G GKST+ +P SG I
Sbjct: 8 LKVEELNYNYS--DGTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRI 65
Query: 442 LLDGNNI--KGLDLKWLRQQIGLVNQEPA--LFATTIRENILYGKDDATM--EEITRAAK 495
L D I + LR+ IG+V Q+P LF+ ++ +++ +G + + +EI +
Sbjct: 66 LFDNKPIDYSRKGIMKLRESIGIVFQDPDNQLFSASVYQDVSFGAVNMKLPEDEIRKRVD 125
Query: 496 LSEAMSF--ISNLPER--FETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSAL 551
A+ I +L ++ LS GQK+R+AI+ +V P +L+LDE T+ L
Sbjct: 126 --NALKRTGIEHLKDKPTHC---------LSFGQKKRVAIAGVLVMEPKVLILDEPTAGL 174
Query: 552 DAESENSVQEALDRVM--VGRTTVVVAHRLSTI-RNADVIAVVQGRKIVKTGSHEELISN 608
D + + + L + +G T ++ H + + D + V++ +++ G+ +E+ +
Sbjct: 175 DPMGVSEIMKLLVEMQKELGITIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFAE 234
Query: 609 P 609
Sbjct: 235 K 235
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} Length = 275 | Back alignment and structure |
|---|
Score = 55.2 bits (134), Expect = 3e-08
Identities = 13/59 (22%), Positives = 32/59 (54%), Gaps = 2/59 (3%)
Query: 1018 IELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGK 1076
+++ ++++Y + K N+ ++ G+ A++G +G GKST+ P++G+
Sbjct: 8 LKVEELNYNYSDGTHAL--KGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGR 64
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} Length = 355 | Back alignment and structure |
|---|
Score = 140 bits (354), Expect = 3e-36
Identities = 70/242 (28%), Positives = 119/242 (49%), Gaps = 21/242 (8%)
Query: 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEI 441
IEF V YP I G++V L+G SGSGK+T++ LI P G++
Sbjct: 15 IEFVGVEKIYPG--GARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDV 72
Query: 442 LLDGNNIKGLDLKWLRQQIGLVNQEPALFA-TTIRENILYGKDDATMEEITRAAKLSEAM 500
+ G + L + ++ +GLV Q ALF T+ +N+ +G + + + A++ E +
Sbjct: 73 WIGGKRVTDLPPQ--KRNVGLVFQNYALFQHMTVYDNVSFGLREKRVPKDEMDARVRELL 130
Query: 501 SFISNLPERFETQVGERGI-QLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSV 559
F+ L R +LSGGQ+QR+A++RA+ P +LL DE +A+D + +
Sbjct: 131 RFM-RLES-----YANRFPHELSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRREL 184
Query: 560 QEALDRV--MVGRTTVVVAH----RLSTIRNADVIAVVQGRKIVKTGSHEELISNPNSAY 613
+ + +V +G T+V V H L AD + V+ + + G+ EE+ P + +
Sbjct: 185 RTFVRQVHDEMGVTSVFVTHDQEEALEV---ADRVLVLHEGNVEQFGTPEEVYEKPGTLF 241
Query: 614 AA 615
A
Sbjct: 242 VA 243
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} Length = 355 | Back alignment and structure |
|---|
Score = 56.5 bits (137), Expect = 2e-08
Identities = 24/60 (40%), Positives = 33/60 (55%), Gaps = 2/60 (3%)
Query: 1017 TIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGK 1076
TIE GV YP V + + ++R G+ + L+G SGSGK+T+L LI PT G
Sbjct: 14 TIEFVGVEKIYPGGARSV--RGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGD 71
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 Length = 348 | Back alignment and structure |
|---|
Score = 137 bits (347), Expect = 2e-35
Identities = 72/243 (29%), Positives = 122/243 (50%), Gaps = 28/243 (11%)
Query: 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEI 441
IE + +S + + ++ D L + +G+ ++G +G+GK+ + LI F+ P SG I
Sbjct: 2 IEIESLSRKWK---NFSL-DNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRI 57
Query: 442 LLDGNNIKGLDLKWLRQQIGLVNQEPALFA-TTIRENILYGKDDATMEEITRAAKLSEAM 500
LLDG ++ L + + I V Q +LF +++N+ +G M++I ++ +
Sbjct: 58 LLDGKDVTDLSPE--KHDIAFVYQNYSLFPHMNVKKNLEFG---MRMKKIKDPKRVLDTA 112
Query: 501 SF--ISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENS 558
I +L +R LSGG++QR+A++RA+V NP ILLLDE SALD ++ +
Sbjct: 113 RDLKIEHLLDRNPLT-------LSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQEN 165
Query: 559 VQEALDRV--MVGRTTVVVAH----RLSTIRNADVIAVVQGRKIVKTGSHEELISNPNSA 612
+E L + T + + H AD IAVV K+++ G EE+ P
Sbjct: 166 AREMLSVLHKKNKLTVLHITHDQTEARIM---ADRIAVVMDGKLIQVGKPEEIFEKPVEG 222
Query: 613 YAA 615
A
Sbjct: 223 RVA 225
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 Length = 348 | Back alignment and structure |
|---|
Score = 50.2 bits (121), Expect = 2e-06
Identities = 16/59 (27%), Positives = 32/59 (54%), Gaps = 4/59 (6%)
Query: 1018 IELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGK 1076
IE+ + + + + +LKV +G+ ++G +G+GK+ L LI F+ P +G+
Sbjct: 2 IEIESLSRKWKN----FSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGR 56
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron transport, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} Length = 359 | Back alignment and structure |
|---|
Score = 137 bits (347), Expect = 3e-35
Identities = 72/250 (28%), Positives = 121/250 (48%), Gaps = 26/250 (10%)
Query: 378 LSGHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPL 437
++ + +S + + P + + L + G+I+ ++G SG GK+T++ + F +P
Sbjct: 1 MTAALHIGHLSKSFQNTPVL---NDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPD 57
Query: 438 SGEILLDGNNIKGLDLKWL---RQQIGLVNQEPALFA-TTIRENILYGKDDATMEEITRA 493
SGEI L G I L +++G + QE LF T+ NI YG +
Sbjct: 58 SGEISLSGKTIFS-KNTNLPVRERRLGYLVQEGVLFPHLTVYRNIAYGLGNGKGRTAQER 116
Query: 494 AKLSEAMSFI--SNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSAL 551
++ + S L R+ + LSGGQ+QR A++RA+ +P ++LLDE SAL
Sbjct: 117 QRIEAMLELTGISELAGRYPHE-------LSGGQQQRAALARALAPDPELILLDEPFSAL 169
Query: 552 DAESENSVQEALDRVM--VGRTTVVVAH----RLSTIRNADVIAVVQGRKIVKTGSHEEL 605
D + ++E + + G++ V V+H L AD IAV++ +I++T S EL
Sbjct: 170 DEQLRRQIREDMIAALRANGKSAVFVSHDREEALQY---ADRIAVMKQGRILQTASPHEL 226
Query: 606 ISNPNSAYAA 615
P AA
Sbjct: 227 YRQPADLDAA 236
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron transport, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} Length = 359 | Back alignment and structure |
|---|
Score = 51.4 bits (124), Expect = 8e-07
Identities = 15/58 (25%), Positives = 31/58 (53%), Gaps = 3/58 (5%)
Query: 1018 IELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAG 1075
+ + + S+ + P + D +L + G+ + ++G SG GK+T+L + F P +G
Sbjct: 5 LHIGHLSKSFQNTPVL---NDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSG 59
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 132 bits (335), Expect = 7e-35
Identities = 68/225 (30%), Positives = 111/225 (49%), Gaps = 21/225 (9%)
Query: 400 FDKFCLDI---PAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWL 456
F L++ L+G +G+GKS + LI +P GE+ L+G +I L +
Sbjct: 11 LGNFRLNVDFEMGRDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPE-- 68
Query: 457 RQQIGLVNQEPALFA-TTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVG 515
R+ IG V Q+ ALF ++ NI YG + E R + I++L +R +
Sbjct: 69 RRGIGFVPQDYALFPHLSVYRNIAYGLRNVERVERDRRVREMAEKLGIAHLLDRKPAR-- 126
Query: 516 ERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRV--MVGRTTV 573
LSGG++QR+A++RA+V P +LLLDE SA+D +++ + E L V +
Sbjct: 127 -----LSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPIL 181
Query: 574 VVAHRLS---TIRNADVIAVVQGRKIVKTGSHEELISNPNSAYAA 615
V H L + AD +AV+ +IV+ G +E + + + A
Sbjct: 182 HVTHDLIEAAML--ADEVAVMLNGRIVEKGKLKE-LFSAKNGEVA 223
|
| >2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* Length = 263 | Back alignment and structure |
|---|
Score = 131 bits (333), Expect = 2e-34
Identities = 73/218 (33%), Positives = 108/218 (49%), Gaps = 21/218 (9%)
Query: 405 LDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNI--KGLDLKWLRQQIGL 462
+ I G++V ++G SGSGKST + + + GEI++DG N+ K +L +R+++G+
Sbjct: 45 VHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKVREEVGM 104
Query: 463 VNQEPALFA-TTIRENILYGKDDATMEEITRAAKLSEAMSFIS--NLPERFETQVGERGI 519
V Q LF T+ NI + + R ++AM + L ++
Sbjct: 105 VFQRFNLFPHMTVLNNITLAP--MKVRKWPREKAEAKAMELLDKVGLKDKAHAYPD---- 158
Query: 520 QLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMV-----GRTTVV 574
LSGGQ QR+AI+RA+ P I+L DE TSALD E V E L VM G T VV
Sbjct: 159 SLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPE---MVGEVLS-VMKQLANEGMTMVV 214
Query: 575 VAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELISNPNS 611
V H + R D + + G I++ G E+L P
Sbjct: 215 VTHEMGFAREVGDRVLFMDGGYIIEEGKPEDLFDRPQH 252
|
| >2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* Length = 263 | Back alignment and structure |
|---|
Score = 45.3 bits (108), Expect = 4e-05
Identities = 17/65 (26%), Positives = 34/65 (52%), Gaps = 3/65 (4%)
Query: 1012 TNVEGTIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYD 1071
+++ I++ + S+ + + K N+ +R G+ + ++G SGSGKST L + D
Sbjct: 19 SHMLQMIDVHQLKKSFG---SLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLED 75
Query: 1072 PTAGK 1076
G+
Sbjct: 76 FDEGE 80
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 134 bits (340), Expect = 8e-33
Identities = 51/264 (19%), Positives = 99/264 (37%), Gaps = 34/264 (12%)
Query: 360 ERDTMSKASSKTGRKLDKLSGHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGS 419
E A + + D S + + + + + +I+ ++G +
Sbjct: 332 EALQFRIADATEDLQNDSASRAFSYPSLKKTQGDF----VLNVEEGEFSDSEILVMMGEN 387
Query: 420 GSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIGLVNQEP--ALFATTIREN 477
G+GK+T+I L+ +P G+ + N + Q+I LF IR
Sbjct: 388 GTGKTTLIKLLAGALKPDEGQDIPKLN------VSMKPQKIAPKFPGTVRQLFFKKIRGQ 441
Query: 478 ILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVK 537
L + ++ + ++ + + ++ V LSGG+ QR+AI A+
Sbjct: 442 FL---NPQFQTDVVKPLRIDDII-------DQE---VQH----LSGGELQRVAIVLALGI 484
Query: 538 NPSILLLDEATSALDAESENSVQEALDRVM--VGRTTVVVAHRLSTIRN-ADVIAVVQGR 594
I L+DE ++ LD+E + + R + +T +V H AD + V +G
Sbjct: 485 PADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFIVEHDFIMATYLADKVIVFEGI 544
Query: 595 KIVK--TGSHEELISNPNSAYAAL 616
+ E L++ N L
Sbjct: 545 PSKNAHARAPESLLTGCNRFLKNL 568
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 123 bits (311), Expect = 3e-29
Identities = 46/236 (19%), Positives = 92/236 (38%), Gaps = 31/236 (13%)
Query: 382 IEFKDVSFCYPSRPDVAIFDKFCLDIP-AGKIVALVGGSGSGKSTVISLI--------ER 432
V+ Y + F L P G+++ LVG +G GKST + ++ R
Sbjct: 78 NLEAHVTHRYSANS----FKLHRLPTPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGR 133
Query: 433 FYEPLSGEILL---DGNNIKGLDLKWLRQQIGLVNQEP--ALFATTIRENILYGKDDATM 487
F +P + ++ G+ ++ K L I + + I+ + + +
Sbjct: 134 FDDPPEWQEIIKYFRGSELQNYFTKMLEDDIKAIIKPQYVDNIPRAIKGPVQKVGELLKL 193
Query: 488 EEITRAAKLSEAMSF--ISNLPERFETQVGERGI-QLSGGQKQRIAISRAIVKNPSILLL 544
+ + + N+ +R I +LSGG+ QR AI + V+ + +
Sbjct: 194 RMEKSPEDVKRYIKILQLENVLKRD--------IEKLSGGELQRFAIGMSCVQEADVYMF 245
Query: 545 DEATSALDAESENSVQEALDRVMVGRTTVVVA-HRLSTIRN-ADVIAVVQGRKIVK 598
DE +S LD + + + + ++ V+ H LS + +D + ++ G V
Sbjct: 246 DEPSSYLDVKQRLNAAQIIRSLLAPTKYVICVEHDLSVLDYLSDFVCIIYGVPSVY 301
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 51.6 bits (124), Expect = 1e-06
Identities = 13/77 (16%), Positives = 29/77 (37%), Gaps = 2/77 (2%)
Query: 1000 KTQVIGDIGEELTNVEGTIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGK 1059
I D E+L N + + + + + ++G++G+GK
Sbjct: 334 LQFRIADATEDLQNDSASRAFSYPSLKK--TQGDFVLNVEEGEFSDSEILVMMGENGTGK 391
Query: 1060 STVLSLILRFYDPTAGK 1076
+T++ L+ P G+
Sbjct: 392 TTLIKLLAGALKPDEGQ 408
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 46.9 bits (112), Expect = 3e-05
Identities = 16/60 (26%), Positives = 24/60 (40%), Gaps = 3/60 (5%)
Query: 1017 TIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGK 1076
T V Y + + R G+ + LVG +G GKST L ++ P G+
Sbjct: 77 TNLEAHVTHRYSANSFKL---HRLPTPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGR 133
|
| >1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 Length = 262 | Back alignment and structure |
|---|
Score = 126 bits (320), Expect = 1e-32
Identities = 77/237 (32%), Positives = 116/237 (48%), Gaps = 45/237 (18%)
Query: 405 LDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNI-------------KGL 451
L AG +++++G SGSGKST + I +P G I+++G NI
Sbjct: 27 LQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVADKN 86
Query: 452 DLKWLRQQIGLVNQEPALFA-TTIRENILYG--------KDDATMEEITRAAKLSEAMSF 502
L+ LR ++ +V Q L++ T+ EN++ K DA RA K +
Sbjct: 87 QLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDA----RERALKYLAKV-- 140
Query: 503 ISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEA 562
+ ER + + LSGGQ+QR++I+RA+ P +LL DE TSALD E V E
Sbjct: 141 --GIDERAQGKYPV---HLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPE---LVGEV 192
Query: 563 LDRVMV-----GRTTVVVAHRLSTIRN-AD-VIAVVQGRKIVKTGSHEELISNPNSA 612
L +M G+T VVV H + R+ + VI + QG+ I + G E++ NP S
Sbjct: 193 LR-IMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGK-IEEEGDPEQVFGNPQSP 247
|
| >1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 Length = 262 | Back alignment and structure |
|---|
Score = 46.8 bits (112), Expect = 2e-05
Identities = 21/59 (35%), Positives = 31/59 (52%), Gaps = 3/59 (5%)
Query: 1018 IELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGK 1076
+ + +H Y EV K +L+ RAG ++++G SGSGKST L I P+ G
Sbjct: 7 LHVIDLHKRYGGH-EV--LKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGA 62
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} Length = 253 | Back alignment and structure |
|---|
Score = 124 bits (315), Expect = 3e-32
Identities = 59/247 (23%), Positives = 112/247 (45%), Gaps = 49/247 (19%)
Query: 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEI 441
+ +++ F Y + +F + D+ G I+A++G +G GKST++ L+ + P+ G+I
Sbjct: 5 LSVENLGFYYQAEN--FLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKI 62
Query: 442 LLDGNNIKGLDLKWLRQQIGLVNQEP-ALFATTIRENILYG------------KDDATME 488
+ Q IG V Q + FA ++ + +L G D
Sbjct: 63 EVY-------------QSIGFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHD---Y 106
Query: 489 EITRAAKLSEAMSF--ISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDE 546
++ +A+ + +++L +R + LSGGQ+Q I I+RAI ++LLDE
Sbjct: 107 QVAM-----QALDYLNLTHLAKR---EFTS----LSGGQRQLILIARAIASECKLILLDE 154
Query: 547 ATSALDAESENSVQEALDRVMV--GRTTVVVAHRLST-IRNADVIAVVQGRKIVKTGSHE 603
TSALD +++ V L + T V H+ + + A+ ++ + K G
Sbjct: 155 PTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPNQVVAIANKTLLLNKQNF-KFGETR 213
Query: 604 ELISNPN 610
++++ N
Sbjct: 214 NILTSEN 220
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} Length = 253 | Back alignment and structure |
|---|
Score = 61.4 bits (150), Expect = 2e-10
Identities = 19/59 (32%), Positives = 33/59 (55%), Gaps = 2/59 (3%)
Query: 1018 IELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGK 1076
+ + + F Y + +F+ N + G +A++GQ+G GKST+L L+L + P GK
Sbjct: 5 LSVENLGFYYQAEN--FLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGK 61
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 125 bits (315), Expect = 5e-30
Identities = 49/257 (19%), Positives = 94/257 (36%), Gaps = 24/257 (9%)
Query: 361 RDTMSKASSKTGRKLDKLSGHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSG 420
R K K LD + D + + G+I+ ++G +G
Sbjct: 246 RPDEIKFMLKEVSDLDLSKDLKTKMKWTKIIKKLGDFQLVVDN-GEAKEGEIIGILGPNG 304
Query: 421 SGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIGLVNQEPALFATTIRENILY 480
GK+T ++ G + + + + Q N + T+++ +
Sbjct: 305 IGKTTFARILVGEITADEGSVTPEKQILS------YKPQRIFPNYD-----GTVQQYLEN 353
Query: 481 GKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPS 540
DA ++++ + NL E+ V + LSGG+ Q++ I+ + K
Sbjct: 354 ASKDALSTSSWFFEEVTKRL----NLHRLLESNVND----LSGGELQKLYIAATLAKEAD 405
Query: 541 ILLLDEATSALDAESENSVQEALDRVMV--GRTTVVVAHRLSTIRN-ADVIAVVQGRKIV 597
+ +LD+ +S LD E V +A+ RV T ++ H LS AD I V +G
Sbjct: 406 LYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDLSIHDYIADRIIVFKGEPEK 465
Query: 598 K-TGSHEELISNPNSAY 613
+ + + +
Sbjct: 466 AGLATSPVTLKTGMNEF 482
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 114 bits (287), Expect = 2e-26
Identities = 47/234 (20%), Positives = 94/234 (40%), Gaps = 41/234 (17%)
Query: 385 KDVSFCYPSRPDVAIFDKFCLDIP-AGKIVALVGGSGSGKSTVISLIERFYEPLSGEILL 443
+V Y V F F L P I+ ++G +G GK+TV+ ++ P G+
Sbjct: 3 GEVIHRY----KVNGFKLFGLPTPKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDP-- 56
Query: 444 DGNNIKGLDLKWLR-------------------QQIGLVNQEPALFATTIRENILYGKDD 484
+ K LK R +I V T+ E +
Sbjct: 57 NSKVGKDEVLKRFRGKEIYNYFKELYSNELKIVHKIQYVEYASKFLKGTVNEIL------ 110
Query: 485 ATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLL 544
++E + ++ E ++ ++NL + LSGG QR+ ++ ++++ + +
Sbjct: 111 TKIDERGKKDEVKELLN-MTNLWNK---DAN----ILSGGGLQRLLVAASLLREADVYIF 162
Query: 545 DEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRN-ADVIAVVQGRKIV 597
D+ +S LD ++ +A+ ++ + +VV H L + D+I ++ G V
Sbjct: 163 DQPSSYLDVRERMNMAKAIRELLKNKYVIVVDHDLIVLDYLTDLIHIIYGESSV 216
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 47.3 bits (113), Expect = 2e-05
Identities = 11/32 (34%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Query: 1036 FKDFNLKV-RAGKSMALVGQSGSGKSTVLSLI 1066
FK F L + + ++G++G GK+TVL ++
Sbjct: 14 FKLFGLPTPKNNTILGVLGKNGVGKTTVLKIL 45
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 46.2 bits (110), Expect = 5e-05
Identities = 8/47 (17%), Positives = 20/47 (42%)
Query: 1030 RPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGK 1076
+ N + + G+ + ++G +G GK+T +++ G
Sbjct: 278 KLGDFQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGS 324
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* Length = 235 | Back alignment and structure |
|---|
Score = 118 bits (297), Expect = 7e-30
Identities = 69/207 (33%), Positives = 107/207 (51%), Gaps = 15/207 (7%)
Query: 382 IEFKDVSFCYPS-RPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGE 440
++ K+V+ Y + L+I G+ V+++G SGSGKST++++I +P GE
Sbjct: 2 VKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGE 61
Query: 441 ILLDGNNIKGLD---LKWLR-QQIGLVNQEPALFA-TTIRENI---LYGKDDATMEEITR 492
+ +D LD L +R +IG V Q+ L T EN+ L K M R
Sbjct: 62 VYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEER 121
Query: 493 AAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALD 552
+ E + L ERF + QLSGGQ+QR+AI+RA+ NP I+L D+ T ALD
Sbjct: 122 RKRALECLKMA-ELEERFANH---KPNQLSGGQQQRVAIARALANNPPIILADQPTWALD 177
Query: 553 AESENSVQEALDRV--MVGRTTVVVAH 577
+++ + + L ++ G+T VVV H
Sbjct: 178 SKTGEKIMQLLKKLNEEDGKTVVVVTH 204
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* Length = 235 | Back alignment and structure |
|---|
Score = 50.2 bits (121), Expect = 1e-06
Identities = 17/50 (34%), Positives = 33/50 (66%), Gaps = 1/50 (2%)
Query: 1018 IELRGVHFSYPS-RPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLI 1066
++L+ V +Y + K+ NL ++ G+ ++++G SGSGKST+L++I
Sbjct: 2 VKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNII 51
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C Length = 249 | Back alignment and structure |
|---|
Score = 116 bits (294), Expect = 3e-29
Identities = 49/223 (21%), Positives = 99/223 (44%), Gaps = 29/223 (13%)
Query: 399 IFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQ 458
++ AG+I+ LVG +G+GKST+++ + G I G ++ L
Sbjct: 15 RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAG-MTSGKGSIQFAGQPLEAWSATKLAL 73
Query: 459 QIGLVNQEPAL-FATTIRENILYG----KDDATMEEITRAAKLSEAMSFISNLPERFETQ 513
++Q+ FAT + + + ++ A L + R
Sbjct: 74 HRAYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALDD-------KLGRSTN- 125
Query: 514 VGERGIQLSGGQKQRIAISRAIV-------KNPSILLLDEATSALDAESENSVQEALDRV 566
QLSGG+ QR+ ++ ++ +LLLDE ++LD ++++ + L +
Sbjct: 126 ------QLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSAL 179
Query: 567 -MVGRTTVVVAHRLS-TIRNADVIAVVQGRKIVKTGSHEELIS 607
G V+ +H L+ T+R+A +++G K++ +G EE+++
Sbjct: 180 SQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVLT 222
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A Length = 224 | Back alignment and structure |
|---|
Score = 115 bits (290), Expect = 4e-29
Identities = 53/206 (25%), Positives = 94/206 (45%), Gaps = 22/206 (10%)
Query: 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEI 441
+ +++ I L + G+ V+++G SGSGKST++ ++ P G++
Sbjct: 5 LRAENIKKVIRG---YEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKV 61
Query: 442 LLDGNNIKGLD---LKWLR-QQIGLVNQEPALFA-TTIRENI----LYGKDDATMEEITR 492
L+G + + L LR +++G V Q L T EN+ L E R
Sbjct: 62 FLEGKEVDYTNEKELSLLRNRKLGFVFQFHYLIPELTALENVIVPMLKMGKPKK-EAKER 120
Query: 493 AAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALD 552
L + L ++ + + +LSGG++QR+AI+RA+ P +L DE T LD
Sbjct: 121 GEYLLSEL----GLGDK----LSRKPYELSGGEQQRVAIARALANEPILLFADEPTGNLD 172
Query: 553 AESENSVQEALDRV-MVGRTTVVVAH 577
+ + V + ++ G + V+V H
Sbjct: 173 SANTKRVMDIFLKINEGGTSIVMVTH 198
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A Length = 224 | Back alignment and structure |
|---|
Score = 46.3 bits (111), Expect = 1e-05
Identities = 14/49 (28%), Positives = 26/49 (53%), Gaps = 3/49 (6%)
Query: 1018 IELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLI 1066
+ + I K +L V+ G+ ++++G SGSGKST+L ++
Sbjct: 5 LRAENIKKVIR---GYEILKGISLSVKKGEFVSIIGASGSGKSTLLYIL 50
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 122 bits (309), Expect = 6e-29
Identities = 51/243 (20%), Positives = 104/243 (42%), Gaps = 29/243 (11%)
Query: 361 RDTMSKASSKTGRKLDKLSGHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSG 420
R + + + R + +E+ + Y S + +I G+++ +VG +G
Sbjct: 337 RPYEIRFTKLSERVDVERETLVEYPRLVKDYGSF----KLEVEPGEIRKGEVIGIVGPNG 392
Query: 421 SGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIGLVNQEPALFATTIRENILY 480
GK+T + ++ EP G++ D Q I + T+ E +
Sbjct: 393 IGKTTFVKMLAGVEEPTEGKVEWDLTVAYK------PQYIKAEYEG------TVYELLS- 439
Query: 481 GKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPS 540
++ +E + + + + ++ V + LSGG+ QR+AI+ ++++
Sbjct: 440 ---KIDSSKLNSNFYKTELLKPL-GIIDLYDRNVED----LSGGELQRVAIAATLLRDAD 491
Query: 541 ILLLDEATSALDAESENSVQEALDRVM--VGRTTVVVAHRLSTIRN-ADVIAVVQGRKIV 597
I LLDE ++ LD E +V A+ +M +T +VV H + I +D + V +G +
Sbjct: 492 IYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLIVFEG-EPG 550
Query: 598 KTG 600
+ G
Sbjct: 551 RHG 553
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 118 bits (298), Expect = 1e-27
Identities = 51/222 (22%), Positives = 90/222 (40%), Gaps = 18/222 (8%)
Query: 385 KDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVIS-----LIERFYE-PLS 438
+D Y A + G +V +VG +G+GK+T + LI E S
Sbjct: 95 EDCVHRYG---VNAFVLYRLPIVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDS 151
Query: 439 GEILLDGNNIKGLDLKWLRQQIGLVNQEPAL-FATTIRENILYGKDDATMEEITRAAKLS 497
+ ++ L + R + G + + + + + GK ++++ K
Sbjct: 152 WDNVIRAFRGNELQNYFERLKNGEIRPVVKPQYVDLLPK-AVKGKVRELLKKVDEVGKFE 210
Query: 498 EAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESEN 557
E + L + ++ QLSGG+ QR+AI+ A+++ DE +S LD
Sbjct: 211 EVVK-ELELENVLDRELH----QLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRL 265
Query: 558 SVQEALDRVMVGRTTVVVA-HRLSTIRN-ADVIAVVQGRKIV 597
V + R+ V+V H L+ + +DVI VV G V
Sbjct: 266 KVARVIRRLANEGKAVLVVEHDLAVLDYLSDVIHVVYGEPGV 307
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 46.5 bits (111), Expect = 4e-05
Identities = 16/68 (23%), Positives = 30/68 (44%), Gaps = 4/68 (5%)
Query: 1009 EELTNVEGTIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILR 1068
E +E + Y S + ++R G+ + +VG +G GK+T + ++
Sbjct: 349 RVDVERETLVEYPRLVKDYGSF----KLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAG 404
Query: 1069 FYDPTAGK 1076
+PT GK
Sbjct: 405 VEEPTEGK 412
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 Length = 256 | Back alignment and structure |
|---|
Score = 115 bits (290), Expect = 9e-29
Identities = 57/232 (24%), Positives = 108/232 (46%), Gaps = 22/232 (9%)
Query: 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEI 441
+ KD+ + + +I G+I L+G +G+GK+T + +I +P SG +
Sbjct: 16 VVVKDLRKRIGKKEIL---KGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIV 72
Query: 442 LLDGNNIKGLDLKWLRQQIGLVNQEPALFAT-TIRENI-----LYGKDDATMEEITRAAK 495
+ G N+ + +R+ I + +E + E + Y + +EE +
Sbjct: 73 TVFGKNVVE-EPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEE--MVER 129
Query: 496 LSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAES 555
+E L E+ + +V S G +++ I+RA++ NP + +LDE TS LD +
Sbjct: 130 ATEIA----GLGEKIKDRVST----YSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLN 181
Query: 556 ENSVQEALDRVMVGRTTVVV-AHRLSTI-RNADVIAVVQGRKIVKTGSHEEL 605
V++ L + T++V +H + + D IA++ IV+TG+ EEL
Sbjct: 182 AREVRKILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEEL 233
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 120 bits (304), Expect = 1e-28
Identities = 55/243 (22%), Positives = 104/243 (42%), Gaps = 29/243 (11%)
Query: 361 RDTMSKASSKTGRKLDKLSGHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSG 420
R K + R + + + + Y S + +I G+++ +VG +G
Sbjct: 267 RPYEIKFTKTGERVEIERETLVTYPRLVKDYGSF----RLEVEPGEIKKGEVIGIVGPNG 322
Query: 421 SGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIGLVNQEPALFATTIRENILY 480
GK+T + ++ EP G+I D K Q I + T+ E +
Sbjct: 323 IGKTTFVKMLAGVEEPTEGKIEWDLTVAY----K--PQYIKADYEG------TVYELL-- 368
Query: 481 GKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPS 540
++ +E + + + + ++ +V E LSGG+ QR+AI+ ++++
Sbjct: 369 --SKIDASKLNSNFYKTELLKPL-GIIDLYDREVNE----LSGGELQRVAIAATLLRDAD 421
Query: 541 ILLLDEATSALDAESENSVQEALDRVM--VGRTTVVVAHRLSTIRN-ADVIAVVQGRKIV 597
I LLDE ++ LD E +V A+ +M +T +VV H + I +D + V +G +
Sbjct: 422 IYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLMVFEG-EPG 480
Query: 598 KTG 600
K G
Sbjct: 481 KYG 483
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 113 bits (284), Expect = 4e-26
Identities = 63/273 (23%), Positives = 109/273 (39%), Gaps = 34/273 (12%)
Query: 385 KDVSFCYPSRPDVAIFDKFCLDIP-AGKIVALVGGSGSGKSTVIS-----LIERFYE-PL 437
+D Y F + L + G +V +VG +G+GKST + LI
Sbjct: 25 EDCVHRYGVNA----FVLYRLPVVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDND 80
Query: 438 SGEILLDGNNIKGL---DLKWLRQQIGLVNQEPALFATTIRENILYGKDDATMEEITRAA 494
S + ++ L K +I V + + I + + GK +++
Sbjct: 81 SWDGVIRAFRGNELQNYFEKLKNGEIRPVVKPQ--YVDLIPK-AVKGKVIELLKKADETG 137
Query: 495 KLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAE 554
KL E + + L E ++ LSGG+ QR+AI+ A+++N + DE +S LD
Sbjct: 138 KLEEVVKAL-ELENVLEREIQ----HLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIR 192
Query: 555 SENSVQEALDRVMVGRTTVVVA-HRLSTIRN-ADVIAVVQGRKIVKTGSHEELISNPNSA 612
+ A+ R+ +V+V H L+ + +D+I VV G V + S P
Sbjct: 193 QRLNAARAIRRLSEEGKSVLVVEHDLAVLDYLSDIIHVVYGEPGV-----YGIFSQPKGT 247
Query: 613 YAALVQLQEAASQQSNSSQCPNMGRPLSIKFSR 645
+ + + N RP IKF++
Sbjct: 248 RNGINEFLRGYLKDENVRF-----RPYEIKFTK 275
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 46.1 bits (110), Expect = 5e-05
Identities = 14/68 (20%), Positives = 29/68 (42%), Gaps = 4/68 (5%)
Query: 1009 EELTNVEGTIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILR 1068
E + + Y S + +++ G+ + +VG +G GK+T + ++
Sbjct: 279 RVEIERETLVTYPRLVKDYGSF----RLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAG 334
Query: 1069 FYDPTAGK 1076
+PT GK
Sbjct: 335 VEEPTEGK 342
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* Length = 353 | Back alignment and structure |
|---|
Score = 116 bits (293), Expect = 3e-28
Identities = 77/249 (30%), Positives = 125/249 (50%), Gaps = 29/249 (11%)
Query: 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEI 441
I K+VS + VA+ D ++I G+ ++G SG+GK+T + +I P +GE+
Sbjct: 4 IIVKNVSKVFKKGKVVAL-DNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGEL 62
Query: 442 LLDG---NNIKGLDLKWLRQQIGLVNQEPALFAT-TIRENILYG------KDDATMEEIT 491
D + L + ++IG+V Q AL+ T ENI + + + +
Sbjct: 63 YFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVE 122
Query: 492 RAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSAL 551
AK+ + I ++ F + LSG Q+QR+A++RA+VK+PS+LLLDE S L
Sbjct: 123 EVAKILD----IHHVLNHFPRE-------LSGAQQQRVALARALVKDPSLLLLDEPFSNL 171
Query: 552 DAESENSVQEALDRV--MVGRTTVVVAHRLS---TIRNADVIAVVQGRKIVKTGSHEELI 606
DA +S + + V +G T +VV+H + I AD + V+ K+V+ G E+L
Sbjct: 172 DARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAI--ADRVGVLVKGKLVQVGKPEDLY 229
Query: 607 SNPNSAYAA 615
NP S A
Sbjct: 230 DNPVSIQVA 238
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* Length = 353 | Back alignment and structure |
|---|
Score = 51.5 bits (124), Expect = 9e-07
Identities = 14/60 (23%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Query: 1017 TIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGK 1076
I ++ V + V + + N+ + G+ ++G SG+GK+T + +I P+ G+
Sbjct: 3 RIIVKNVSKVFKKGKVVAL-DNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGE 61
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 Length = 214 | Back alignment and structure |
|---|
Score = 108 bits (273), Expect = 6e-27
Identities = 42/226 (18%), Positives = 99/226 (43%), Gaps = 37/226 (16%)
Query: 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEI 441
+E +D+S Y D + ++ + I G +V G +G GK+T++ I + +PL GEI
Sbjct: 11 LEIRDLSVGY----DKPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEI 66
Query: 442 LLDGNNIKGLDLKWLRQQIGLVNQEPALFAT-TIRENI-----LYG--KDDATMEEITRA 493
+ G+ + ++ +I + +E + ++ + + LYG + + + +
Sbjct: 67 I-----YNGVPITKVKGKIFFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALES 121
Query: 494 AKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDA 553
++ + + L S G +R+ ++ ++ N I +LD+ A+D
Sbjct: 122 VEVLDLKKKLGEL---------------SQGTIRRVQLASTLLVNAEIYVLDDPVVAIDE 166
Query: 554 ESENSVQEALDRVMVGRTTVVVA--HRLSTIRNADVIAVVQGRKIV 597
+S++ V +++ ++ + V+++ LS DV +
Sbjct: 167 DSKHKVLKSILEILKEKGIVIISSREELSY---CDVNENLHKYSTK 209
|
| >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} Length = 362 | Back alignment and structure |
|---|
Score = 101 bits (255), Expect = 3e-23
Identities = 79/254 (31%), Positives = 124/254 (48%), Gaps = 46/254 (18%)
Query: 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEI 441
I+ +++ + + + L I G+ +AL+G SGSGKST++ I Y+P SG+I
Sbjct: 4 IKLENIVKKFG---NFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKI 60
Query: 442 LLDGNNIKGLDLKWLRQQIGLVNQEPALFAT-TIRENILYG------KDDATMEEITRAA 494
D ++ L K + +GLV Q AL+ T+ +NI + + +++ A
Sbjct: 61 YFDEKDVTELPPK--DRNVGLVFQNWALYPHMTVYKNIAFPLELRKAPREEIDKKVREVA 118
Query: 495 KLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAE 554
K+ I L R QLSGGQ+QR+AI+RA+VK P +LLLDE S LDA
Sbjct: 119 KMLH----IDKLLNR-------YPWQLSGGQQQRVAIARALVKEPEVLLLDEPLSNLDAL 167
Query: 555 ------SE-NSVQEALDRVMVGRTTVVVAH------RLSTIRNADVIAVVQGRKIVKTGS 601
+E +Q+ L G TTV V H + AD IAV++ +I++ G+
Sbjct: 168 LRLEVRAELKRLQKEL-----GITTVYVTHDQAEALAM-----ADRIAVIREGEILQVGT 217
Query: 602 HEELISNPNSAYAA 615
+E+ P +
Sbjct: 218 PDEVYYKPKYKFVG 231
|
| >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} Length = 362 | Back alignment and structure |
|---|
Score = 49.9 bits (120), Expect = 3e-06
Identities = 24/60 (40%), Positives = 35/60 (58%), Gaps = 3/60 (5%)
Query: 1017 TIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGK 1076
I+L + + + + NLK++ G+ MAL+G SGSGKST+L I Y PT+GK
Sbjct: 3 EIKLENIVKKFGN---FTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGK 59
|
| >2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} Length = 359 | Back alignment and structure |
|---|
Score = 94.6 bits (236), Expect = 8e-21
Identities = 76/258 (29%), Positives = 120/258 (46%), Gaps = 54/258 (20%)
Query: 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEI 441
I ++ + V D ++ G+ VAL+G SG GK+T + ++ Y+P SGEI
Sbjct: 4 IRVVNLKKYFG---KVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEI 60
Query: 442 LLDGNNIKGLDLKWLRQQIGLVNQEPALFAT-TIRENILYG------KDDATMEEITRAA 494
D + + K +++G+V Q AL+ T+ ENI + D + + A
Sbjct: 61 YFDDVLVNDIPPK--YREVGMVFQNYALYPHMTVFENIAFPLRARRISKDEVEKRVVEIA 118
Query: 495 KLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAE 554
+ I NL +R + QLSGGQ+QR+A++RA+VK P +LL DE S LDA
Sbjct: 119 RKLL----IDNLLDR-------KPTQLSGGQQQRVALARALVKQPKVLLFDEPLSNLDA- 166
Query: 555 SENSVQEALDRV-M----------VGRTTVVVAH------RLSTIRNADVIAVVQGRKIV 597
L R+ M +G T+V V H + A IAV K+V
Sbjct: 167 -------NL-RMIMRAEIKHLQQELGITSVYVTHDQAEAMTM-----ASRIAVFNQGKLV 213
Query: 598 KTGSHEELISNPNSAYAA 615
+ G+ +E+ +P + + A
Sbjct: 214 QYGTPDEVYDSPKNMFVA 231
|
| >2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} Length = 359 | Back alignment and structure |
|---|
Score = 45.3 bits (108), Expect = 8e-05
Identities = 17/59 (28%), Positives = 31/59 (52%), Gaps = 3/59 (5%)
Query: 1017 TIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAG 1075
+I + + + V + +V+ G+ +AL+G SG GK+T L ++ Y PT+G
Sbjct: 3 SIRVVNLKKYFGK---VKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSG 58
|
| >1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* Length = 372 | Back alignment and structure |
|---|
Score = 93.1 bits (232), Expect = 3e-20
Identities = 74/258 (28%), Positives = 118/258 (45%), Gaps = 54/258 (20%)
Query: 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEI 441
++ ++++ + + +K L I G+ + L+G SG GK+T + +I EP G I
Sbjct: 12 VKLENLTKRFG---NFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRI 68
Query: 442 LLDGNNIKGLDLKWLRQQIGLVNQEPALFAT-TIRENILYG------KDDATMEEITRAA 494
++ L K + I +V Q A++ T+ ENI + D + + AA
Sbjct: 69 YFGDRDVTYLPPK--DRNISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAA 126
Query: 495 KLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAE 554
+L + I L R QLSGGQ+QR+A++RAIV P +LL+DE S LDA+
Sbjct: 127 ELLQ----IEELLNR-------YPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAK 175
Query: 555 SENSVQEALDRV-M----------VGRTTVVVAH------RLSTIRNADVIAVVQGRKIV 597
L RV M + TT+ V H + D IAV+ +++
Sbjct: 176 --------L-RVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTM-----GDRIAVMNRGQLL 221
Query: 598 KTGSHEELISNPNSAYAA 615
+ GS E+ PNS + A
Sbjct: 222 QIGSPTEVYLRPNSVFVA 239
|
| >1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* Length = 372 | Back alignment and structure |
|---|
Score = 45.3 bits (108), Expect = 7e-05
Identities = 16/59 (27%), Positives = 29/59 (49%), Gaps = 3/59 (5%)
Query: 1017 TIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAG 1075
++L + + + NL ++ G+ + L+G SG GK+T L +I +PT G
Sbjct: 11 EVKLENLTKRFGN---FTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEG 66
|
| >1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A Length = 372 | Back alignment and structure |
|---|
Score = 88.8 bits (221), Expect = 7e-19
Identities = 49/183 (26%), Positives = 83/183 (45%), Gaps = 25/183 (13%)
Query: 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEI 441
+ DV + +V + L++ G+ + L+G SG GK+T + +I EP G+I
Sbjct: 4 VRLVDVWKVFG---EVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQI 60
Query: 442 LLDGNNIKGLDLKWLRQ----QIGLVNQEPALFAT-TIRENILYG------KDDATMEEI 490
+ + + I +V Q AL+ T+ +NI + + +
Sbjct: 61 YIGDKLVADPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRV 120
Query: 491 TRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSA 550
A+L ++ L R + +LSGGQ+QR+A+ RAIV+ P + L+DE S
Sbjct: 121 REVAELLG----LTELLNR-------KPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSN 169
Query: 551 LDA 553
LDA
Sbjct: 170 LDA 172
|
| >1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A Length = 372 | Back alignment and structure |
|---|
Score = 45.3 bits (108), Expect = 7e-05
Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 3/59 (5%)
Query: 1017 TIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAG 1075
+ L V + V ++ +L+V+ G+ M L+G SG GK+T L +I +P+ G
Sbjct: 3 GVRLVDVWKVFGEVTAV---REMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRG 58
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 86.0 bits (214), Expect = 9e-19
Identities = 47/148 (31%), Positives = 75/148 (50%), Gaps = 15/148 (10%)
Query: 405 LDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWL-RQQIGLV 463
L +P G+IV L+G +G+GK+T +S I G+I+ +G +I + R I LV
Sbjct: 27 LKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMGIALV 86
Query: 464 NQEPALFAT-TIRENILYG----KDDATMEEITRAAKLSEAMSFISNLPERFETQVGERG 518
+ +F T+ EN++ G KD ++ L S L ER + G
Sbjct: 87 PEGRRIFPELTVYENLMMGAYNRKDKEGIKR-----DLEWIFSLFPRLKERLKQLGG--- 138
Query: 519 IQLSGGQKQRIAISRAIVKNPSILLLDE 546
LSGG++Q +AI RA++ P +L++DE
Sbjct: 139 -TLSGGEQQMLAIGRALMSRPKLLMMDE 165
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* Length = 257 | Back alignment and structure |
|---|
Score = 84.5 bits (210), Expect = 4e-18
Identities = 57/241 (23%), Positives = 108/241 (44%), Gaps = 38/241 (15%)
Query: 401 DKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQI 460
D + + G + ++G +GSGKST+I++I F + G + + +I + ++
Sbjct: 24 DGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKE----PAEL 79
Query: 461 ---GLVN--QEPALFAT-TIRENILYGKDDAT-------------MEEITRAAKLSEAMS 501
G+V Q P T+ EN+L G+ +E K + +
Sbjct: 80 YHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILE 139
Query: 502 FISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQE 561
F+ L ++ + G +LSGGQ + + I RA++ NP ++++DE + + + +
Sbjct: 140 FL-KLSHLYDRKAG----ELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFN 194
Query: 562 ALDRV-MVGRTTVVVAHRLSTIRN-ADVIAVV-QGRKIVKTGSHEELI----SNPN--SA 612
+ + G T +++ HRL + N D + V+ G+ I + G EE I S+P
Sbjct: 195 HVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAE-GRGEEEIKNVLSDPKVVEI 253
Query: 613 Y 613
Y
Sbjct: 254 Y 254
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 84.7 bits (209), Expect = 1e-16
Identities = 49/236 (20%), Positives = 92/236 (38%), Gaps = 28/236 (11%)
Query: 342 ITAFIRAKAAAYPIFEMIERDTMSKASSKTGRKLDKLSGHIEFKDVSFCYPSRPDVAIFD 401
+T F+ K A + E +R + + + + S Y ++ + +
Sbjct: 396 MTIFLHEKKAKDILDEFRKRAVDNIPVGPNFDDEEDEGEDLCNCEFSLAYGAKI---LLN 452
Query: 402 KFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIG 461
K L + + + G +G GKST++ I + + + ++ I
Sbjct: 453 KTQLRLKRARRYGICGPNGCGKSTLMRAI-------ANGQVDGFPTQEECRTVYVEHDI- 504
Query: 462 LVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQL 521
+ T + ++ T E I KL E F E + L
Sbjct: 505 -----DGTHSDTSVLDFVFESGVGTKEAI--KDKLIE-FGF---TDEMIAMPISA----L 549
Query: 522 SGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAH 577
SGG K ++A++RA+++N ILLLDE T+ LD + + L+ G T++ ++H
Sbjct: 550 SGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNT--CGITSITISH 603
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 58.5 bits (141), Expect = 1e-08
Identities = 20/82 (24%), Positives = 43/82 (52%), Gaps = 3/82 (3%)
Query: 520 QLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRL 579
LSGGQK ++ ++ + P +++LDE T+ LD +S ++ +AL +++ H
Sbjct: 901 GLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKE--FEGGVIIITHSA 958
Query: 580 STIRN-ADVIAVVQGRKIVKTG 600
+N + + V+ ++ +G
Sbjct: 959 EFTKNLTEEVWAVKDGRMTPSG 980
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 50.0 bits (119), Expect = 4e-06
Identities = 32/231 (13%), Positives = 68/231 (29%), Gaps = 20/231 (8%)
Query: 343 TAFIRAKAAAYPIFEMIERD---TMSKASSKTGRKLDKLSGHIEFKDVSFCYPSRPDVAI 399
T F++ AA E+ D + G K K ++ ++ F YP
Sbjct: 631 TEFVKKCPAAKAYEELSNTDLEFKFPEPGYLEGVK-TKQKAIVKVTNMEFQYPG-TSKPQ 688
Query: 400 FDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQ 459
+A++G +G+GKST+I+++ P SGE+ N +
Sbjct: 689 ITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEVYT-HENCR---------- 737
Query: 460 IGLVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGI 519
I + Q + + + + A I+ ++ +
Sbjct: 738 IAYIKQHAFAHIESHLDKTPSEYIQWRFQTGEDRETMDRANRQINENDAEAMNKIFK--- 794
Query: 520 QLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGR 570
+ G ++ I + + ++ + V
Sbjct: 795 -IEGTPRRIAGIHSRRKFKNTYEYECSFLLGENIGMKSERWVPMMSVDNAW 844
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 47.0 bits (111), Expect = 4e-05
Identities = 15/59 (25%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Query: 1018 IELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGK 1076
+++ + F YP D N + +A++G +G+GKST+++++ PT+G+
Sbjct: 672 VKVTNMEFQYPG-TSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGE 729
|
| >3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A Length = 381 | Back alignment and structure |
|---|
Score = 81.1 bits (201), Expect = 3e-16
Identities = 54/183 (29%), Positives = 91/183 (49%), Gaps = 29/183 (15%)
Query: 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLI---ERFYEPLS 438
++ ++V+ + +V + LDI G+ V VG SG GKST++ +I E S
Sbjct: 4 VQLQNVTKAWG---EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLE---TITS 57
Query: 439 GEILLDGNNIKGLDLKWLRQQIGLVNQEPALFA-TTIRENILYGKDDATM--EEITR--- 492
G++ + + + +G+V Q AL+ ++ EN+ +G A E I +
Sbjct: 58 GDLFIGEKRMNDTPPA--ERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVN 115
Query: 493 -AAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSAL 551
A++ + +++L +R + LSGGQ+QR+AI R +V PS+ LLDE S L
Sbjct: 116 QVAEVLQ----LAHLLDR-------KPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNL 164
Query: 552 DAE 554
DA
Sbjct: 165 DAA 167
|
| >3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A Length = 381 | Back alignment and structure |
|---|
Score = 44.8 bits (107), Expect = 1e-04
Identities = 20/50 (40%), Positives = 32/50 (64%), Gaps = 3/50 (6%)
Query: 1017 TIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLI 1066
+++L+ V ++ EVV+ KD NL + G+ + VG SG GKST+L +I
Sbjct: 3 SVQLQNVTKAWG---EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMI 49
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 64.1 bits (155), Expect = 2e-10
Identities = 85/612 (13%), Positives = 173/612 (28%), Gaps = 202/612 (33%)
Query: 342 ITAFIRAKAAAYPIF--EMIERD---TMSKASSKTGRKLDKLSGHIEFKDVSFCYPSRPD 396
+ + F E++ + MS ++ + +IE +D + D
Sbjct: 68 FWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLY-----ND 122
Query: 397 VAIFDKF-------------CL--DIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEI 441
+F K+ L PA ++ + G GSGK+ ++ ++
Sbjct: 123 NQVFAKYNVSRLQPYLKLRQALLELRPAKNVL-IDGVLGSGKTW-----------VALDV 170
Query: 442 LLDGNNIKGLDLK--WLRQQIGLVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEA 499
L +D K WL + N + + + +LY D +
Sbjct: 171 CLSYKVQCKMDFKIFWLN--LKNCNSPETVLE--MLQKLLYQID----------PNWTSR 216
Query: 500 MSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSV 559
SN+ R S + R + +N +L+L + ++ +
Sbjct: 217 SDHSSNIKLRIH----------SIQAELRRLLKSKPYEN-CLLVLL------NVQNAKAW 259
Query: 560 QEALD---RVMVGRTTVVVAHRLSTIRNADVIAVVQG--RKIVKTGSHEELISNPNS--- 611
A + ++++ TT R V + + H ++
Sbjct: 260 -NAFNLSCKILL--TT----------RFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSL 306
Query: 612 -AYAALVQLQEAASQQSNSSQCPNMGRPLSIKFSRELSGTRTSFGASFR----------- 659
+ Q+ + ++ P + S R
Sbjct: 307 LLKYLDCRPQDLPREVLTTN-------PRRLSI----------IAESIRDGLATWDNWKH 349
Query: 660 --SEKESVLSHGAADATEPATAKHVSAIKLYSMVRPDWTYGVCGTICAII-AGAQMPLFA 716
+K + + + + EPA + K++ ++ A +P
Sbjct: 350 VNCDKLTTIIESSLNVLEPAEYR-----KMFDR-------------LSVFPPSAHIP--- 388
Query: 717 LGVSQALVAYYMDW-DTTQREVKKITILFCCAAVI-------TVIVHAIEHLSFGIMGER 768
+ L W D + +V + +++ T+ + +I +L +
Sbjct: 389 ---TILLSLI---WFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSI-YLEL-----K 436
Query: 769 LTLRVREKMFSAILS--NEIGWFDEMDNSSSIL-------------ASRLESDATLLRTI 813
+ L + +I+ N FD D L TL R +
Sbjct: 437 VKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMV 496
Query: 814 VVDRSTIL--IQNFGLVTASFVIAFILNWRITLVVVATYPLIISGHIS------EKL--- 862
+D + I++ TA ILN TL + Y +I E+L
Sbjct: 497 FLDFRFLEQKIRHDS--TAWNASGSILN---TLQQLKFY----KPYICDNDPKYERLVNA 547
Query: 863 ---FFQGYGGNL 871
F NL
Sbjct: 548 ILDFLPKIEENL 559
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 50.6 bits (120), Expect = 3e-06
Identities = 57/427 (13%), Positives = 117/427 (27%), Gaps = 153/427 (35%)
Query: 726 YYMDWDTTQREVKKITILFCCAAVITVIVHAIEHLSFGIMGERLTLRVREKMFSAILSNE 785
++MD++T + + + +++V A + + + M +ILS E
Sbjct: 5 HHMDFETGEHQ-------YQYKDILSVFEDAFV--------DNFDCKDVQDMPKSILSKE 49
Query: 786 IGWFDEMDNSSSILASRLESDATLL--------RTIVVDR--STILIQNFGLVTASFVIA 835
E+D+ I+ S+ TL + +V + +L N+ + +
Sbjct: 50 -----EIDH---IIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTE 101
Query: 836 FILNWRITLVVVATY-------PLIISGHIS-EKLFFQGYGGNLSKAYLKAN-------- 879
+T + + + ++S + + + L +A L+
Sbjct: 102 QRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLK-----LRQALLELRPAKNVLID 156
Query: 880 -M-------LAAEAVSNIRTVAAF------------CSEDKVLE----LYSR---ELVEP 912
+ +A + + + S + VLE L +
Sbjct: 157 GVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSR 216
Query: 913 SKRSF-IRGQIAGIFYGISQFFIFSSYGLAL------WYGSVLMGKELASF--------- 956
S S I+ +I I + + Y L +F
Sbjct: 217 SDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKA-----WNAFNLSCKILLT 271
Query: 957 ---KSVMKSFMVLIVTALAM---------GETLAL--------VPDL----LKGNQMAAS 992
K V T +++ E +L DL L N S
Sbjct: 272 TRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLS 331
Query: 993 VF-EVL---------------DRKTQVIGDIGEELTNVEGTIELRGVHFSYPSRPEVVIF 1036
+ E + D+ T +I L E R F + +F
Sbjct: 332 IIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLE----PAEYRK-MFD-----RLSVF 381
Query: 1037 KDFNLKV 1043
+ +
Sbjct: 382 PP-SAHI 387
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 49.5 bits (117), Expect = 6e-06
Identities = 70/540 (12%), Positives = 151/540 (27%), Gaps = 171/540 (31%)
Query: 147 QDISLFDTEASTGEVISAITSDIIVVQDALSEKVGNFMHYISRFLGGFIIGFARVWQISL 206
+ D + ++S D I++ +S L + Q +
Sbjct: 31 DNFDCKDVQDMPKSILSKEEIDHIIMSK----------DAVSGTL--RLFWTLLSKQEEM 78
Query: 207 VTLSIVPLIALAGGMYAYVTIGLIARVRKSYVKAGEIAEEVIGNV----RTVQAFAGED- 261
V + ++ + Y + L++ ++ + + I Q FA +
Sbjct: 79 VQKFVEEVLRIN---YKF----LMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNV 131
Query: 262 ---KAVKVYKEALSNTYK------YGRKAGLAKGLGLGSMHCVLFLSWSLLVWYVSVV-- 310
+ ++AL G G K +W + + V
Sbjct: 132 SRLQPYLKLRQALLELRPAKNVLIDG-VLGSGK-------------TW--VA--LDVCLS 173
Query: 311 --VHKHISNG------GESFTT-----MLNVVIAGLSL-GQAAPDITAFIRAKAAAYPIF 356
V + + ML ++ + + D ++ I+ I
Sbjct: 174 YKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIK-----LRIH 228
Query: 357 EMIERDTMSKASSKTGRKLDKLSGHIEFKDVSFCYPSRPDVAIFDKF---CLDIPAGKIV 413
+ S L L +V + ++ F C KI+
Sbjct: 229 SIQAELRRLLKSKPYENCLLVLL------NVQ-------NAKAWNAFNLSC------KIL 269
Query: 414 ------ALVGGSGSGKSTVISLIER---FYEPLSGEILLDGNNIKGLDLKWLRQQIGLVN 464
+ + +T ISL +LL + + D L +++ N
Sbjct: 270 LTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQD---LPREVLTTN 326
Query: 465 QEP---ALFATTIRENIL-------YGKDDATMEEITRAAKLSEAM-SFISNLP-----E 508
P ++ A +IR+ + D KL+ + S ++ L +
Sbjct: 327 --PRRLSIIAESIRDGLATWDNWKHVNCD-----------KLTTIIESSLNVLEPAEYRK 373
Query: 509 RFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSAL-----DAESENSVQEAL 563
F+ R+++ P+ILL S + ++ V +
Sbjct: 374 MFD----------------RLSVFPPSAHIPTILL-----SLIWFDVIKSDVMVVVNKLH 412
Query: 564 DRVMVGR---TTVVVAHRL-----STIRNADVI--AVVQGRKIVKTGSHEELISNPNSAY 613
+V + + + + + N + ++V I KT ++LI Y
Sbjct: 413 KYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQY 472
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 46.8 bits (110), Expect = 4e-05
Identities = 80/560 (14%), Positives = 173/560 (30%), Gaps = 155/560 (27%)
Query: 594 RKIVKTGSHEELISNPNSAYAALVQLQEAASQQSNSSQCPNMGRPLSIKFSRELSGTRTS 653
+ I+ + +I + ++ L S+Q Q KF E+
Sbjct: 43 KSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQ----------KFVEEVLRINYK 92
Query: 654 FGAS-FRSEKESVLSHGAADATEPATAKHVSAI-KLYSMVRPDWTYGVCGTICAIIAGAQ 711
F S ++E+ T ++ +LY+ + Y V + +
Sbjct: 93 FLMSPIKTEQR---------QPSMMTRMYIEQRDRLYNDNQVFAKYNV--SRLQPYLKLR 141
Query: 712 MPLFALGVSQALVAYYMDWDTTQREVK---KITILFCCAAVITVIVHAIE-HLSFGI--- 764
L L ++ ++ + K T + A+ + + ++ + F I
Sbjct: 142 QALLELRPAKNVLIDGV---------LGSGK-TWV----ALDVCLSYKVQCKMDFKIFWL 187
Query: 765 -MGE----RLTLRVREKMFSAILSNEIGWFDEMDNSSSILASRLESDATLLRTIVVDRST 819
+ L + +K+ I N W D+SS+I R+ S LR ++ +
Sbjct: 188 NLKNCNSPETVLEMLQKLLYQIDPN---WTSRSDHSSNI-KLRIHSIQAELRRLLKSKPY 243
Query: 820 -----IL--------IQNFG-----LVTASF--VIAFILNWRITLVVVATYPLIISGHIS 859
+L F L+T F V F+ T + + + + ++
Sbjct: 244 ENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEV 303
Query: 860 EKLFFQGYGGNLSKAYLKANMLAAEAVSN----IRTVAAFCSED---------------- 899
+ L L + L E ++ + +A +
Sbjct: 304 KSLL-------LKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLT 356
Query: 900 KVLELYSRELVEPS--KRSFIRGQIAGIFYGISQFFIF------SSYGLA-LWYGSV--- 947
++E S ++EP+ ++ F + +F + L+ +W+ +
Sbjct: 357 TIIES-SLNVLEPAEYRKMFD------------RLSVFPPSAHIPTILLSLIWFDVIKSD 403
Query: 948 --LMGKELASFKSVM----KSFMVLIVTALAMGETLALVPDLLKGNQMAASVFEVLDRKT 1001
++ +L S++ K + I L L L + S+ + +
Sbjct: 404 VMVVVNKLHK-YSLVEKQPKESTISI-----PSIYLELKVKLENEYALHRSIVDHYNIPK 457
Query: 1002 QVIGDIGEELTNVEGTI-ELRGVHFSYPSRPEVV-----IFKDFNL---KVRAGKSMALV 1052
D ++ G H PE + +F DF K+R
Sbjct: 458 TFDSD-DLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRH------D 510
Query: 1053 GQSGSGKSTVLSLI--LRFY 1070
+ + ++L+ + L+FY
Sbjct: 511 STAWNASGSILNTLQQLKFY 530
|
| >1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B* Length = 148 | Back alignment and structure |
|---|
Score = 56.3 bits (136), Expect = 2e-09
Identities = 24/116 (20%), Positives = 43/116 (37%), Gaps = 25/116 (21%)
Query: 498 EAMSFISNLPERFETQVGERGIQ------------------LSGGQKQRI------AISR 533
A + E ++V R + LSGG++ + A+S
Sbjct: 17 LASEIFAEFTEGKYSEVVVRAEENKVRLFVVWEGKERPLTFLSGGERIALGLAFRLAMSL 76
Query: 534 AIVKNPSILLLDEATSALDAESENSVQEALDR-VMVGRTTVVVAHRLSTIRNADVI 588
+ S+L+LDE T LD E + ++R + ++V+H AD +
Sbjct: 77 YLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEELKDAADHV 132
|
| >3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B Length = 339 | Back alignment and structure |
|---|
Score = 57.7 bits (139), Expect = 7e-09
Identities = 30/148 (20%), Positives = 54/148 (36%), Gaps = 15/148 (10%)
Query: 472 TTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGI-----QLSGGQK 526
RE L + E + + + + V G LSGG++
Sbjct: 195 ALAREAALSKIGELASEIFAEFTEGKYSEVVVRAEENKVRLFVVWEGKERPLTFLSGGER 254
Query: 527 Q------RIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRL 579
R+A+S + S+L+LDE T LD E + ++R + ++V+H
Sbjct: 255 IALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDE 314
Query: 580 STIRNADVIAVVQGRKIVKTGSHEELIS 607
AD + + + S E++S
Sbjct: 315 ELKDAADHVIRI---SLENGSSKVEVVS 339
|
| >2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A Length = 267 | Back alignment and structure |
|---|
Score = 55.6 bits (135), Expect = 2e-08
Identities = 54/218 (24%), Positives = 97/218 (44%), Gaps = 27/218 (12%)
Query: 405 LDIPAGKIVALVGGSGSGKSTVISLI---ERFYEPLSGEILLDGNNIKGLDLK-WLRQQI 460
LD+ G++ A++G +GSGKST+ + + E YE G + G ++ L L R
Sbjct: 41 LDVHPGEVHAIMGPNGSGKSTLSATLAGRED-YEVTGGTVEFKGKDL--LALSPEDRAGE 97
Query: 461 G--LVNQEP--------ALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERF 510
G + Q P F T + + T++ + E ++ + +PE
Sbjct: 98 GIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALL-KMPEDL 156
Query: 511 ETQVGERGIQ--LSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMV 568
R + SGG+K+R I + V P + +LDE+ S LD ++ V + ++ +
Sbjct: 157 ----LTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRD 212
Query: 569 -GRTTVVVAH--RLSTIRNADVIAVVQGRKIVKTGSHE 603
R+ ++V H R+ D + V+ +IVK+G
Sbjct: 213 GKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSGDFT 250
|
| >2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A* Length = 250 | Back alignment and structure |
|---|
Score = 54.1 bits (131), Expect = 6e-08
Identities = 59/218 (27%), Positives = 98/218 (44%), Gaps = 31/218 (14%)
Query: 405 LDIPAGKIVALVGGSGSGKSTVISLI---ERFYEPLSGEILLDGNNIKGLDLK-WLRQQI 460
L +P G++ AL+G +G+GKST+ ++ Y GEILLDG NI L+L R +
Sbjct: 24 LVVPKGEVHALMGPNGAGKSTLGKILAGDPE-YTVERGEILLDGENI--LELSPDERARK 80
Query: 461 G--LVNQEP--------ALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERF 510
G L Q P A F + + + E K+ +A+ + + E +
Sbjct: 81 GLFLAFQYPVEVPGVTIANFLRLALQAK--LGREVGVAEFWT--KVKKALELL-DWDESY 135
Query: 511 ETQVGERGIQ--LSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMV 568
R + SGG+K+R I + +V P+ +LDE S LD ++ V ++ +
Sbjct: 136 ----LSRYLNEGFSGGEKKRNEILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMRG 191
Query: 569 -GRTTVVVAH--RLSTIRNADVIAVVQGRKIVKTGSHE 603
+V+ H R+ D + V+ ++V TG E
Sbjct: 192 PNFGALVITHYQRILNYIQPDKVHVMMDGRVVATGGPE 229
|
| >3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B* Length = 371 | Back alignment and structure |
|---|
Score = 53.3 bits (128), Expect = 2e-07
Identities = 31/148 (20%), Positives = 53/148 (35%), Gaps = 13/148 (8%)
Query: 453 LKWLRQQIGLVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFET 512
L +R+ G + +RE + E + + + R
Sbjct: 217 LDKVRRIFGRNGFQ-----AYLREKYVPLIQKYLNEAFSEFDLPYSFVELTKDFEVRVHA 271
Query: 513 QVGERGI-QLSGGQKQRI------AISRAIVKNPS-ILLLDEATSALDAESENSVQEALD 564
G I LSGG++ + AI+ A++ N ++LDE T LD + E
Sbjct: 272 PNGVLTIDNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFR 331
Query: 565 RVMVGRTTVVVAHRLSTIRNADVIAVVQ 592
+V +++ H ADVI V+
Sbjct: 332 KVKSIPQMIIITHHRELEDVADVIINVK 359
|
| >3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus} Length = 670 | Back alignment and structure |
|---|
Score = 45.2 bits (108), Expect = 1e-04
Identities = 62/288 (21%), Positives = 102/288 (35%), Gaps = 101/288 (35%)
Query: 403 FCLDIPAGKIVALVGGSGSGKST-----VISLIERFY---------EPLSGEILLDGNNI 448
++IP GK+V L G SGSGKS+ + + +R Y + L D + I
Sbjct: 37 IDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAI 96
Query: 449 KGLDLKWLRQQIGLVNQEPALFATTI--------RENILYGK-DDATMEEITRAAKLSEA 499
+GL Q + T + + E+T + ++EA
Sbjct: 97 EGLSPAISIDQKTTSRNPRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMS-VTEA 155
Query: 500 MSFISN--LPERFETQVGERGIQ-------------------------LSGGQKQRIAIS 532
++F L E+ E Q+ ++ LSGG+ QRI
Sbjct: 156 LAFFDGLELTEK-EAQIARLILREIRDRLGFLQNVGLDYLTLSRSAGTLSGGEAQRI--- 211
Query: 533 R-A------------IVKNPSI---------LLLDEATSALDAESENSVQEALDRVM-VG 569
R A ++ PSI L+ L + +G
Sbjct: 212 RLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLI-----------------ATLKSMRDLG 254
Query: 570 RTTVVVAHRLSTIRNADVI------AVVQGRKIVKTGSHEELISNPNS 611
T +VV H T+ AD + A + G ++V G+ EE++++PNS
Sbjct: 255 NTLIVVEHDEDTMLAADYLIDIGPGAGIHGGEVVAAGTPEEVMNDPNS 302
|
| >3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima} Length = 916 | Back alignment and structure |
|---|
Score = 42.8 bits (102), Expect = 7e-04
Identities = 44/137 (32%), Positives = 67/137 (48%), Gaps = 22/137 (16%)
Query: 497 SEAMSFISNLP---ERFET---------QVGERGIQLSGGQKQRIAISRAIVKNP---SI 541
EA+ F N+P + ++G+ LSGG+ QRI ++ + K ++
Sbjct: 770 DEALEFFKNIPSIKRTLQVLHDVGLGYVKLGQPATTLSGGEAQRIKLASELRKRDTGRTL 829
Query: 542 LLLDEATSALDAESENSVQEALDR-VMVGRTTVVVAHRLSTIRNAD-VIAV-----VQGR 594
+LDE T L E + E L R V G T +V+ H L I+NAD +I + +G
Sbjct: 830 YILDEPTVGLHFEDVRKLVEVLHRLVDRGNTVIVIEHNLDVIKNADHIIDLGPEGGKEGG 889
Query: 595 KIVKTGSHEELISNPNS 611
IV TG+ EE+ NP+S
Sbjct: 890 YIVATGTPEEIAKNPHS 906
|
| >3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A Length = 179 | Back alignment and structure |
|---|
Score = 40.6 bits (95), Expect = 7e-04
Identities = 18/104 (17%), Positives = 39/104 (37%), Gaps = 6/104 (5%)
Query: 411 KIVALVGGSGSGKSTVISLIERF-YEPLS-GEILLDGNNIKGLDLKWLRQQIGLVNQE-- 466
K++ + G GSGKS L++ + + +++ +I+ + L + +
Sbjct: 2 KVILITGMPGSGKSEFAKLLKERGAKVIVMSDVVRKRYSIEAKPGERLMDFAKRLREIYG 61
Query: 467 PALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERF 510
+ A E + D + + R L+E F L +
Sbjct: 62 DGVVARLCVEELGTSNHDLVVFDGVR--SLAEVEEFKRLLGDSV 103
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
No hit with probability above 80.00
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 1077 | ||||
| d2hyda1 | 255 | c.37.1.12 (A:324-578) Putative multidrug export AT | 9e-96 | |
| d2hyda1 | 255 | c.37.1.12 (A:324-578) Putative multidrug export AT | 1e-18 | |
| d3b60a1 | 253 | c.37.1.12 (A:329-581) Multidrug resistance ABC tra | 2e-92 | |
| d3b60a1 | 253 | c.37.1.12 (A:329-581) Multidrug resistance ABC tra | 5e-19 | |
| d1jj7a_ | 251 | c.37.1.12 (A:) Peptide transporter Tap1, C-termina | 5e-88 | |
| d1jj7a_ | 251 | c.37.1.12 (A:) Peptide transporter Tap1, C-termina | 1e-20 | |
| d2pmka1 | 241 | c.37.1.12 (A:467-707) Haemolysin B ATP-binding pro | 2e-85 | |
| d2pmka1 | 241 | c.37.1.12 (A:467-707) Haemolysin B ATP-binding pro | 3e-16 | |
| d1mv5a_ | 242 | c.37.1.12 (A:) Multidrug resistance ABC transporte | 2e-81 | |
| d1mv5a_ | 242 | c.37.1.12 (A:) Multidrug resistance ABC transporte | 4e-18 | |
| d1r0wa_ | 281 | c.37.1.12 (A:) Cystic fibrosis transmembrane condu | 1e-69 | |
| d1r0wa_ | 281 | c.37.1.12 (A:) Cystic fibrosis transmembrane condu | 1e-14 | |
| d1l2ta_ | 230 | c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jann | 8e-51 | |
| d1l2ta_ | 230 | c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jann | 1e-12 | |
| d1v43a3 | 239 | c.37.1.12 (A:7-245) Hypothetical protein PH0022, N | 6e-45 | |
| d1v43a3 | 239 | c.37.1.12 (A:7-245) Hypothetical protein PH0022, N | 6e-12 | |
| d1l7vc_ | 231 | c.37.1.12 (C:) ABC transporter involved in vitamin | 1e-44 | |
| d1l7vc_ | 231 | c.37.1.12 (C:) ABC transporter involved in vitamin | 7e-08 | |
| d3dhwc1 | 240 | c.37.1.12 (C:1-240) Methionine import ATP-binding | 2e-44 | |
| d3dhwc1 | 240 | c.37.1.12 (C:1-240) Methionine import ATP-binding | 1e-11 | |
| d1b0ua_ | 258 | c.37.1.12 (A:) ATP-binding subunit of the histidin | 4e-44 | |
| d1b0ua_ | 258 | c.37.1.12 (A:) ATP-binding subunit of the histidin | 4e-12 | |
| d1g2912 | 240 | c.37.1.12 (1:1-240) Maltose transport protein MalK | 4e-39 | |
| d1g2912 | 240 | c.37.1.12 (1:1-240) Maltose transport protein MalK | 8e-11 | |
| d2awna2 | 232 | c.37.1.12 (A:4-235) Maltose transport protein MalK | 5e-38 | |
| d2awna2 | 232 | c.37.1.12 (A:4-235) Maltose transport protein MalK | 1e-11 | |
| d1sgwa_ | 200 | c.37.1.12 (A:) Putative ABC transporter PF0895 {Py | 4e-37 | |
| d1sgwa_ | 200 | c.37.1.12 (A:) Putative ABC transporter PF0895 {Py | 2e-11 | |
| d1ji0a_ | 240 | c.37.1.12 (A:) Branched chain aminoacid ABC transp | 1e-35 | |
| d1ji0a_ | 240 | c.37.1.12 (A:) Branched chain aminoacid ABC transp | 4e-09 | |
| d1g6ha_ | 254 | c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jann | 7e-35 | |
| d1g6ha_ | 254 | c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jann | 3e-10 | |
| d1vpla_ | 238 | c.37.1.12 (A:) Putative ABC transporter TM0544 {Th | 9e-35 | |
| d1vpla_ | 238 | c.37.1.12 (A:) Putative ABC transporter TM0544 {Th | 6e-11 | |
| d1oxxk2 | 242 | c.37.1.12 (K:1-242) Glucose transport protein GlcV | 1e-34 | |
| d1oxxk2 | 242 | c.37.1.12 (K:1-242) Glucose transport protein GlcV | 3e-12 | |
| d3d31a2 | 229 | c.37.1.12 (A:1-229) Sulfate/molybdate ABC transpor | 6e-34 | |
| d3d31a2 | 229 | c.37.1.12 (A:1-229) Sulfate/molybdate ABC transpor | 2e-10 | |
| d2onka1 | 240 | c.37.1.12 (A:1-240) Molybdate/tungstate import ATP | 6e-33 | |
| d2onka1 | 240 | c.37.1.12 (A:1-240) Molybdate/tungstate import ATP | 1e-06 | |
| d1ye8a1 | 178 | c.37.1.11 (A:1-178) Hypothetical kinase-like prote | 2e-21 | |
| d1ye8a1 | 178 | c.37.1.11 (A:1-178) Hypothetical kinase-like prote | 3e-05 | |
| g1ii8.1 | 369 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 4e-10 | |
| g1f2t.1 | 292 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 1e-09 | |
| g1f2t.1 | 292 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 0.004 | |
| d2i3ba1 | 189 | c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 | 3e-06 | |
| d2hyda2 | 323 | f.37.1.1 (A:1-323) Putative multidrug export ATP-b | 4e-06 | |
| d2hyda2 | 323 | f.37.1.1 (A:1-323) Putative multidrug export ATP-b | 2e-04 | |
| d3b60a2 | 319 | f.37.1.1 (A:10-328) Multidrug resistance ABC trans | 2e-05 | |
| d3b60a2 | 319 | f.37.1.1 (A:10-328) Multidrug resistance ABC trans | 5e-05 | |
| d1zp6a1 | 176 | c.37.1.25 (A:6-181) Hypothetical protein Atu3015 { | 0.001 |
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 255 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Score = 302 bits (775), Expect = 9e-96
Identities = 128/248 (51%), Positives = 171/248 (68%), Gaps = 2/248 (0%)
Query: 373 RKLDKLSGHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIER 432
+ ++ G I+ VSF Y + I L I G+ VA VG SG GKST+I+LI R
Sbjct: 8 QPIEIKQGRIDIDHVSFQYNDN-EAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPR 66
Query: 433 FYEPLSGEILLDGNNIKGLDLKWLRQQIGLVNQEPALFATTIRENILYGKDDATMEEITR 492
FY+ SG+IL+DG+NIK LR QIGLV Q+ LF+ T++ENIL G+ AT EE+
Sbjct: 67 FYDVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGRPTATDEEVVE 126
Query: 493 AAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALD 552
AAK++ A FI NLP+ ++T+VGERG++LSGGQKQR++I+R + NP IL+LDEATSALD
Sbjct: 127 AAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALD 186
Query: 553 AESENSVQEALDRVMVGRTTVVVAHRLSTIRNADVIAVVQGRKIVKTGSHEELISNPNSA 612
ESE+ +QEALD + RTT++VAHRLSTI +AD I V++ IV+TG+H ELI+ A
Sbjct: 187 LESESIIQEALDVLSKDRTTLIVAHRLSTITHADKIVVIENGHIVETGTHRELIAK-QGA 245
Query: 613 YAALVQLQ 620
Y L +Q
Sbjct: 246 YEHLYSIQ 253
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 255 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Score = 84.8 bits (210), Expect = 1e-18
Identities = 29/68 (42%), Positives = 43/68 (63%), Gaps = 1/68 (1%)
Query: 1009 EELTNVEGTIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILR 1068
+ + +G I++ V F Y E I KD NL + G+++A VG SG GKST+++LI R
Sbjct: 8 QPIEIKQGRIDIDHVSFQYNDN-EAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPR 66
Query: 1069 FYDPTAGK 1076
FYD T+G+
Sbjct: 67 FYDVTSGQ 74
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 253 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Score = 292 bits (750), Expect = 2e-92
Identities = 120/250 (48%), Positives = 172/250 (68%), Gaps = 3/250 (1%)
Query: 372 GRKLDKLSGHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIE 431
R +D+ +G +EF++V+F YP R +V L IPAGK VALVG SGSGKST+ SLI
Sbjct: 4 KRVIDRATGDLEFRNVTFTYPGR-EVPALRNINLKIPAGKTVALVGRSGSGKSTIASLIT 62
Query: 432 RFYEPLSGEILLDGNNIKGLDLKWLRQQIGLVNQEPALFATTIRENILYGK-DDATMEEI 490
RFY+ G IL+DG++++ L LR Q+ LV+Q LF T+ NI Y + ++ + E+I
Sbjct: 63 RFYDIDEGHILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEEYSREQI 122
Query: 491 TRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSA 550
AA+++ AM FI+ + +T +GE G+ LSGGQ+QRIAI+RA++++ IL+LDEATSA
Sbjct: 123 EEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSA 182
Query: 551 LDAESENSVQEALDRVMVGRTTVVVAHRLSTIRNADVIAVVQGRKIVKTGSHEELISNPN 610
LD ESE ++Q ALD + RT++V+AHRLSTI AD I VV+ IV+ G+H EL++ +
Sbjct: 183 LDTESERAIQAALDELQKNRTSLVIAHRLSTIEQADEIVVVEDGIIVERGTHSELLAQ-H 241
Query: 611 SAYAALVQLQ 620
YA L ++Q
Sbjct: 242 GVYAQLHKMQ 251
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 253 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Score = 85.7 bits (212), Expect = 5e-19
Identities = 35/67 (52%), Positives = 45/67 (67%), Gaps = 1/67 (1%)
Query: 1010 ELTNVEGTIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRF 1069
+ G +E R V F+YP R EV ++ NLK+ AGK++ALVG+SGSGKST+ SLI RF
Sbjct: 6 VIDRATGDLEFRNVTFTYPGR-EVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRF 64
Query: 1070 YDPTAGK 1076
YD G
Sbjct: 65 YDIDEGH 71
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 281 bits (720), Expect = 5e-88
Identities = 104/245 (42%), Positives = 159/245 (64%), Gaps = 4/245 (1%)
Query: 377 KLSGHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEP 436
L G ++F+DVSF YP+RPDV + + G++ ALVG +GSGKSTV +L++ Y+P
Sbjct: 7 HLEGLVQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQP 66
Query: 437 LSGEILLDGNNIKGLDLKWLRQQIGLVNQEPALFATTIRENILYG-KDDATMEEITRAAK 495
G++LLDG + + ++L +Q+ V QEP +F +++ENI YG TMEEIT AA
Sbjct: 67 TGGQLLLDGKPLPQYEHRYLHRQVAAVGQEPQVFGRSLQENIAYGLTQKPTMEEITAAAV 126
Query: 496 LSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAES 555
S A SFIS LP+ ++T+V E G QLSGGQ+Q +A++RA+++ P +L+LD+ATSALDA S
Sbjct: 127 KSGAHSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARALIRKPCVLILDDATSALDANS 186
Query: 556 ENSVQEALDRVM--VGRTTVVVAHRLSTIRNADVIAVVQGRKIVKTGSHEELISNPNSAY 613
+ V++ L R+ +++ LS + AD I ++G I + G+H++L+ Y
Sbjct: 187 QLQVEQLLYESPERYSRSVLLITQHLSLVEQADHILFLEGGAIREGGTHQQLMEK-KGCY 245
Query: 614 AALVQ 618
A+VQ
Sbjct: 246 WAMVQ 250
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 90.7 bits (225), Expect = 1e-20
Identities = 27/64 (42%), Positives = 44/64 (68%)
Query: 1013 NVEGTIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDP 1072
++EG ++ + V F+YP+RP+V++ + +R G+ ALVG +GSGKSTV +L+ Y P
Sbjct: 7 HLEGLVQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQP 66
Query: 1073 TAGK 1076
T G+
Sbjct: 67 TGGQ 70
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} Length = 241 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Score = 274 bits (701), Expect = 2e-85
Identities = 113/239 (47%), Positives = 162/239 (67%), Gaps = 1/239 (0%)
Query: 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEI 441
I F+++ F Y I D L I G+++ +VG SGSGKST+ LI+RFY P +G++
Sbjct: 2 ITFRNIRFRYKPD-SPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQV 60
Query: 442 LLDGNNIKGLDLKWLRQQIGLVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMS 501
L+DG+++ D WLR+Q+G+V Q+ L +I +NI ++E++ AAKL+ A
Sbjct: 61 LIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHD 120
Query: 502 FISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQE 561
FIS L E + T VGE+G LSGGQ+QRIAI+RA+V NP IL+ DEATSALD ESE+ +
Sbjct: 121 FISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMR 180
Query: 562 ALDRVMVGRTTVVVAHRLSTIRNADVIAVVQGRKIVKTGSHEELISNPNSAYAALVQLQ 620
+ ++ GRT +++AHRLST++NAD I V++ KIV+ G H+EL+S P S Y+ L QLQ
Sbjct: 181 NMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQLQ 239
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} Length = 241 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Score = 77.3 bits (190), Expect = 3e-16
Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 1/59 (1%)
Query: 1018 IELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGK 1076
I R + F Y V++ + NL ++ G+ + +VG+SGSGKST+ LI RFY P G+
Sbjct: 2 ITFRNIRFRYKPDSPVIL-DNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQ 59
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Score = 263 bits (673), Expect = 2e-81
Identities = 110/240 (45%), Positives = 161/240 (67%), Gaps = 4/240 (1%)
Query: 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEI 441
+ + V F Y + + I+A G SG GKST+ SL+ERFY+P +GEI
Sbjct: 2 LSARHVDFAYDDSEQI--LRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEI 59
Query: 442 LLDGNNIKGLDLKWLRQQIGLVNQEPALFATTIRENILYG-KDDATMEEITRAAKLSEAM 500
+DG I + L+ R QIG V+Q+ A+ A TIREN+ YG + D T E++ + L+ A
Sbjct: 60 TIDGQPIDNISLENWRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFAR 119
Query: 501 SFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQ 560
SF+ N+P++ T+VGERG+++SGGQ+QR+AI+RA ++NP IL+LDEAT++LD+ESE+ VQ
Sbjct: 120 SFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQ 179
Query: 561 EALDRVMVGRTTVVVAHRLSTIRNADVIAVVQGRKIVKTGSHEELISNPNSAYAALVQLQ 620
+ALD +M GRTT+V+AHRLSTI +AD I ++ +I +G H EL++ + YA V Q
Sbjct: 180 KALDSLMKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVAT-HPLYAKYVSEQ 238
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Score = 82.6 bits (204), Expect = 4e-18
Identities = 22/59 (37%), Positives = 34/59 (57%), Gaps = 2/59 (3%)
Query: 1018 IELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGK 1076
+ R V F+Y ++ +D + + + +A G SG GKST+ SL+ RFY PTAG+
Sbjct: 2 LSARHVDFAYDDSEQI--LRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGE 58
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 232 bits (592), Expect = 1e-69
Identities = 64/254 (25%), Positives = 113/254 (44%), Gaps = 20/254 (7%)
Query: 369 SKTGRKLDKLSGHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVIS 428
S RK ++ F + P + L+I G+++A+ G +GSGK++++
Sbjct: 26 SNGDRKHSSDENNVSFSHLCLVG--NP---VLKNINLNIEKGEMLAITGSTGSGKTSLLM 80
Query: 429 LIERFYEPLSGEILLDGNNIKGLDLKWLRQQIGLVNQEPALFATTIRENILYGKDDATME 488
LI E G I G ++ +Q + TI+ENI++G
Sbjct: 81 LILGELEASEGIIKHSG-------------RVSFCSQFSWIMPGTIKENIIFG-VSYDEY 126
Query: 489 EITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEAT 548
K + I+ E+ T +GE G+ LSGGQ+ RI+++RA+ K+ + LLD
Sbjct: 127 RYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPF 186
Query: 549 SALDAESENSVQEA-LDRVMVGRTTVVVAHRLSTIRNADVIAVVQGRKIVKTGSHEELIS 607
LD +E V E+ + ++M +T ++V ++ +R AD I ++ G+ EL S
Sbjct: 187 GYLDVFTEEQVFESCVCKLMANKTRILVTSKMEHLRKADKILILHQGSSYFYGTFSELQS 246
Query: 608 NPNSAYAALVQLQE 621
+ L+
Sbjct: 247 LRPDFSSKLMGYDT 260
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 73.4 bits (180), Expect = 1e-14
Identities = 23/84 (27%), Positives = 42/84 (50%), Gaps = 7/84 (8%)
Query: 993 VFEVLDRKTQVIGDIGEELTNVEGTIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALV 1052
E+L++ Q GD + ++ E + H P + K+ NL + G+ +A+
Sbjct: 16 FGELLEKVQQSNGD--RKHSSDENNVSFS--HLCLVGNP---VLKNINLNIEKGEMLAIT 68
Query: 1053 GQSGSGKSTVLSLILRFYDPTAGK 1076
G +GSGK+++L LIL + + G
Sbjct: 69 GSTGSGKTSLLMLILGELEASEGI 92
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 176 bits (449), Expect = 8e-51
Identities = 68/229 (29%), Positives = 115/229 (50%), Gaps = 13/229 (5%)
Query: 382 IEFKDVSFCYPSR-PDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGE 440
I+ K+V+ Y + L+I G+ V+++G SGSGKST++++I +P GE
Sbjct: 2 IKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGE 61
Query: 441 ILLDGNNIKGLD----LKWLRQQIGLVNQEPALFAT-TIRENILYGKDDATMEEITRAAK 495
+ +D LD K R +IG V Q+ L T EN+ ++ +
Sbjct: 62 VYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEER 121
Query: 496 LSEA--MSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDA 553
A ++ L ERF + QLSGGQ+QR+AI+RA+ NP I+L D+ T ALD+
Sbjct: 122 RKRALECLKMAELEERFANH---KPNQLSGGQQQRVAIARALANNPPIILADQPTGALDS 178
Query: 554 ESENSVQEALDRV--MVGRTTVVVAHRLSTIRNADVIAVVQGRKIVKTG 600
++ + + L ++ G+T VVV H ++ R + I ++ ++ +
Sbjct: 179 KTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVEREE 227
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 66.0 bits (161), Expect = 1e-12
Identities = 21/60 (35%), Positives = 37/60 (61%), Gaps = 1/60 (1%)
Query: 1018 IELRGVHFSYPSR-PEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGK 1076
I+L+ V +Y + K+ NL ++ G+ ++++G SGSGKST+L++I PT G+
Sbjct: 2 IKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGE 61
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Length = 239 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Score = 160 bits (406), Expect = 6e-45
Identities = 65/238 (27%), Positives = 115/238 (48%), Gaps = 14/238 (5%)
Query: 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEI 441
++ ++++ + + +K L I G+ + L+G SG GK+T + +I EP G I
Sbjct: 7 VKLENLTKRFG---NFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRI 63
Query: 442 LLDGNNIKGLDLKWLRQQIGLVNQEPALFAT-TIRENILYGKDDATMEEITRAAKLSEAM 500
++ L K + I +V Q A++ T+ ENI + + ++ A
Sbjct: 64 YFGDRDVTYLPPKD--RNISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAA 121
Query: 501 SFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQ 560
+ + E QLSGGQ+QR+A++RAIV P +LL+DE S LDA+ +++
Sbjct: 122 ELL-QIEELLNRYPA----QLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMR 176
Query: 561 EALDRV--MVGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELISNPNSAYAA 615
+ ++ + TT+ V H D IAV+ ++++ GS E+ PNS + A
Sbjct: 177 AEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLRPNSVFVA 234
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Length = 239 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Score = 64.4 bits (157), Expect = 6e-12
Identities = 16/59 (27%), Positives = 29/59 (49%), Gaps = 3/59 (5%)
Query: 1018 IELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGK 1076
++L + + NL ++ G+ + L+G SG GK+T L +I +PT G+
Sbjct: 7 VKLENLTKRFG---NFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGR 62
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} Length = 231 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Score = 159 bits (403), Expect = 1e-44
Identities = 55/239 (23%), Positives = 113/239 (47%), Gaps = 28/239 (11%)
Query: 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEI 441
++ +DV+ ++ AG+I+ LVG +G+GKST+++ + G I
Sbjct: 4 MQLQDVAEST-------RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGM-TSGKGSI 55
Query: 442 LLDGNNIKGLDLKWLRQQIGLVNQEPAL-FATTIRENILYGKDDATMEEITRAAKLSEAM 500
G ++ L ++Q+ FAT + + + D T E+ + A+
Sbjct: 56 QFAGQPLEAWSATKLALHRAYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALAL 115
Query: 501 SFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVK-------NPSILLLDEATSALDA 553
+ ++G QLSGG+ QR+ ++ +++ +LLLDE ++LD
Sbjct: 116 ----------DDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDV 165
Query: 554 ESENSVQEALDRVMV-GRTTVVVAHRLS-TIRNADVIAVVQGRKIVKTGSHEELISNPN 610
++++ + L + G V+ +H L+ T+R+A +++G K++ +G EE+++ PN
Sbjct: 166 AQQSALDKILSALCQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVLTPPN 224
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} Length = 231 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Score = 52.2 bits (125), Expect = 7e-08
Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 8/59 (13%)
Query: 1018 IELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGK 1076
++L+ V S + +VRAG+ + LVG +G+GKST+L+ + G
Sbjct: 4 MQLQDVAEST-------RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGKGS 54
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Score = 158 bits (402), Expect = 2e-44
Identities = 68/242 (28%), Positives = 127/242 (52%), Gaps = 13/242 (5%)
Query: 382 IEFKDVSFCYPSRP-DVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGE 440
I+ +++ + + + L +PAG+I ++G SG+GKST+I + P G
Sbjct: 2 IKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGS 61
Query: 441 ILLDGNNIKGLDLKW---LRQQIGLVNQEPALFAT-TIRENILYGKDDATMEEITRAAKL 496
+L+DG + L R+QIG++ Q L ++ T+ N+ + + ++
Sbjct: 62 VLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRV 121
Query: 497 SEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESE 556
+E +S + L ++ ++ LSGGQKQR+AI+RA+ NP +LL DEATSALD +
Sbjct: 122 TELLSLV-GLGDKHDSYPS----NLSGGQKQRVAIARALASNPKVLLCDEATSALDPATT 176
Query: 557 NSVQEALDRV--MVGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELISNPNSAY 613
S+ E L + +G T +++ H + ++ D +AV+ ++++ + E+ S+P +
Sbjct: 177 RSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVFSHPKTPL 236
Query: 614 AA 615
A
Sbjct: 237 AQ 238
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Score = 63.7 bits (155), Expect = 1e-11
Identities = 16/60 (26%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Query: 1018 IELRGVHFSYPSRP-EVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGK 1076
I+L + + + + +L V AG+ ++G SG+GKST++ + PT G
Sbjct: 2 IKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGS 61
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Score = 158 bits (401), Expect = 4e-44
Identities = 72/256 (28%), Positives = 116/256 (45%), Gaps = 34/256 (13%)
Query: 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEI 441
+ D+ Y + L AG +++++G SGSGKST + I +P G I
Sbjct: 3 LHVIDLHKRYG---GHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAI 59
Query: 442 LLDGNNIKGL-------------DLKWLRQQIGLVNQEPALFAT-TIRENILY------G 481
+++G NI + L+ LR ++ +V Q L++ T+ EN++ G
Sbjct: 60 IVNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLG 119
Query: 482 KDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSI 541
E RA K + + ER + + LSGGQ+QR++I+RA+ P +
Sbjct: 120 LSKHDARE--RALKYLAKV----GIDERAQGKYPV---HLSGGQQQRVSIARALAMEPDV 170
Query: 542 LLLDEATSALDAESENSVQEALDR-VMVGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKT 599
LL DE TSALD E V + + G+T VVV H + R+ + + + KI +
Sbjct: 171 LLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEE 230
Query: 600 GSHEELISNPNSAYAA 615
G E++ NP S
Sbjct: 231 GDPEQVFGNPQSPRLQ 246
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Score = 65.2 bits (159), Expect = 4e-12
Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
Query: 1018 IELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGK 1076
+ + +H Y + K +L+ RAG ++++G SGSGKST L I P+ G
Sbjct: 3 LHVIDLHKRYG---GHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGA 58
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Score = 143 bits (362), Expect = 4e-39
Identities = 65/242 (26%), Positives = 114/242 (47%), Gaps = 16/242 (6%)
Query: 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEI 441
+ DV + +V + L++ G+ + L+G SG GK+T + +I EP G+I
Sbjct: 4 VRLVDVWKVFG---EVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQI 60
Query: 442 LLDGNNI----KGLDLKWLRQQIGLVNQEPALFAT-TIRENILYGKDDATMEEITRAAKL 496
+ + KG+ + + I +V Q AL+ T+ +NI + + ++
Sbjct: 61 YIGDKLVADPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRV 120
Query: 497 SEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESE 556
E + L E + +LSGGQ+QR+A+ RAIV+ P + L+DE S LDA+
Sbjct: 121 REVAELL-GLTELLNRKPR----ELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLR 175
Query: 557 NSVQEALDRV--MVGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELISNPNSAY 613
++ L ++ +G TT+ V H D IAV+ + + GS +E+ P + +
Sbjct: 176 VRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEVYDKPANTF 235
Query: 614 AA 615
A
Sbjct: 236 VA 237
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Score = 61.1 bits (148), Expect = 8e-11
Identities = 19/59 (32%), Positives = 33/59 (55%), Gaps = 3/59 (5%)
Query: 1018 IELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGK 1076
+ L V + EV ++ +L+V+ G+ M L+G SG GK+T L +I +P+ G+
Sbjct: 4 VRLVDVWKVFG---EVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQ 59
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 232 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Score = 140 bits (353), Expect = 5e-38
Identities = 65/238 (27%), Positives = 113/238 (47%), Gaps = 14/238 (5%)
Query: 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEI 441
++ ++V+ + +V + LDI G+ V VG SG GKST++ +I SG++
Sbjct: 1 VQLQNVTKAWG---EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDL 57
Query: 442 LLDGNNIKGLDLKWLRQQIGLVNQEPALF-ATTIRENILYGKDDATMEEITRAAKLSEAM 500
+ + D + +G+V Q AL+ ++ EN+ +G A ++ ++++
Sbjct: 58 FIGEKRMN--DTPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVA 115
Query: 501 SFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQ 560
+ L + + LSGGQ+QR+AI R +V PS+ LLDE S LDA ++
Sbjct: 116 EVL-QLAHLLDRKPK----ALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMR 170
Query: 561 EALDRV--MVGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELISNPNSAYAA 615
+ R+ +GRT + V H AD I V+ ++ + G EL P + A
Sbjct: 171 IEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYPADRFVA 228
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 232 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Score = 63.4 bits (154), Expect = 1e-11
Identities = 21/57 (36%), Positives = 33/57 (57%), Gaps = 3/57 (5%)
Query: 1018 IELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTA 1074
++L+ V ++ EVV+ KD NL + G+ + VG SG GKST+L +I T+
Sbjct: 1 VQLQNVTKAWG---EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITS 54
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Score = 136 bits (344), Expect = 4e-37
Identities = 41/211 (19%), Positives = 98/211 (46%), Gaps = 21/211 (9%)
Query: 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEI 441
+E +D+S Y D + ++ + I G +V G +G GK+T++ I + +PL GEI
Sbjct: 3 LEIRDLSVGY----DKPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEI 58
Query: 442 LLDGNNIKGLDLKWLRQQIGLVNQEPALFA-TTIRENILYGKDDATMEEITRAAKLSEAM 500
+ + G+ + ++ +I + +E + ++ + + +
Sbjct: 59 IYN-----GVPITKVKGKIFFLPEEIIVPRKISVEDYLKAVA---------SLYGVKVNK 104
Query: 501 SFISNLPERFE-TQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSV 559
+ I + E E + ++ +LS G +R+ ++ ++ N I +LD+ A+D +S++ V
Sbjct: 105 NEIMDALESVEVLDLKKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKV 164
Query: 560 QEALDRVMVGRTTVVVAHRLSTIRNADVIAV 590
+++ ++ + V+++ R + DV
Sbjct: 165 LKSILEILKEKGIVIISSR-EELSYCDVNEN 194
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Score = 62.2 bits (151), Expect = 2e-11
Identities = 12/57 (21%), Positives = 25/57 (43%), Gaps = 4/57 (7%)
Query: 1018 IELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTA 1074
+E+R + Y + + + + + G + G +G GK+T+L I + P
Sbjct: 3 LEIRDLSVGY----DKPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLK 55
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Score = 133 bits (336), Expect = 1e-35
Identities = 62/232 (26%), Positives = 104/232 (44%), Gaps = 12/232 (5%)
Query: 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEI 441
+E + + Y + L +P G+IV L+G +G+GK+T +S I G+I
Sbjct: 7 LEVQSLHVYYG---AIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKI 63
Query: 442 LLDGNNIKGLD-LKWLRQQIGLVNQEPALFAT-TIRENILYGKDDATMEEITRAAKLSEA 499
+ +G +I R I LV + +F T+ EN++ G + +E L
Sbjct: 64 IFNGQDITNKPAHVINRMGIALVPEGRRIFPELTVYENLMMGAYNRKDKE-GIKRDLEWI 122
Query: 500 MSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSV 559
S L ER + G LSGG++Q +AI RA++ P +L++DE + L + V
Sbjct: 123 FSLFPRLKERLKQLGG----TLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEV 178
Query: 560 QEALDRVM-VGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELISNP 609
E + ++ G T ++V A V++ +IV G EL+ N
Sbjct: 179 FEVIQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIVLEGKASELLDNE 230
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Score = 56.1 bits (135), Expect = 4e-09
Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
Query: 1018 IELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTA 1074
+E++ +H Y + K +LKV G+ + L+G +G+GK+T LS I
Sbjct: 7 LEVQSLHVYYG---AIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQK 60
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 254 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 132 bits (332), Expect = 7e-35
Identities = 54/245 (22%), Positives = 106/245 (43%), Gaps = 25/245 (10%)
Query: 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEI 441
+ +++ + + D + + G + ++G +GSGKST+I++I F + G +
Sbjct: 5 LRTENIVKYFG---EFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRV 61
Query: 442 LLDGNNIKGLDLKWL-RQQIGLVNQEPALFAT-TIRENILYG-------------KDDAT 486
+ +I + L I Q P T+ EN+L G
Sbjct: 62 YFENKDITNKEPAELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWI 121
Query: 487 MEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDE 546
+E K + + F+ L ++ + G +LSGGQ + + I RA++ NP ++++DE
Sbjct: 122 PKEEEMVEKAFKILEFL-KLSHLYDRKAG----ELSGGQMKLVEIGRALMTNPKMIVMDE 176
Query: 547 ATSALDAESENSVQEALDRVM-VGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEE 604
+ + + + + + G T +++ HRL + N D + V+ +I+ G EE
Sbjct: 177 PIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRGEE 236
Query: 605 LISNP 609
I N
Sbjct: 237 EIKNV 241
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 254 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 59.6 bits (144), Expect = 3e-10
Identities = 13/59 (22%), Positives = 26/59 (44%), Gaps = 3/59 (5%)
Query: 1018 IELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGK 1076
+ + + E ++ V G ++G +GSGKST++++I F G+
Sbjct: 5 LRTENIVKYFG---EFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGR 60
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} Length = 238 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Score = 130 bits (329), Expect = 9e-35
Identities = 57/237 (24%), Positives = 105/237 (44%), Gaps = 12/237 (5%)
Query: 380 GHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSG 439
G + KD+ + I +I G+I L+G +G+GK+T + +I +P SG
Sbjct: 1 GAVVVKDLRKRIGKKE---ILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSG 57
Query: 440 EILLDGNNIKGLDLKWLRQQIGLVNQEPALFAT-TIRENILYGKDDATMEEITRAAKLSE 498
+ + G N+ + +R+ I + +E + E + + +
Sbjct: 58 IVTVFGKNVVE-EPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVER 116
Query: 499 AMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENS 558
A L E+ + +V S G +++ I+RA++ NP + +LDE TS LD +
Sbjct: 117 ATEIA-GLGEKIKDRVS----TYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNARE 171
Query: 559 VQEALDRVM-VGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELISNPNSAY 613
V++ L + G T +V +H + + D IA++ IV+TG+ EEL +
Sbjct: 172 VRKILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKERYKAQN 228
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} Length = 238 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Score = 61.5 bits (149), Expect = 6e-11
Identities = 14/61 (22%), Positives = 30/61 (49%), Gaps = 3/61 (4%)
Query: 1016 GTIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAG 1075
G + ++ + + I K + ++ G+ L+G +G+GK+T L +I P++G
Sbjct: 1 GAVVVKDLRKRIGKKE---ILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSG 57
Query: 1076 K 1076
Sbjct: 58 I 58
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Score = 130 bits (329), Expect = 1e-34
Identities = 73/241 (30%), Positives = 121/241 (50%), Gaps = 13/241 (5%)
Query: 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEI 441
I K+VS + + V D ++I G+ ++G SG+GK+T + +I P +GE+
Sbjct: 4 IIVKNVSKVFK-KGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGEL 62
Query: 442 LLDGNNIKGLDLKWLR---QQIGLVNQEPALFAT-TIRENILYGKDDATMEEITRAAKLS 497
D + + ++IG+V Q AL+ T ENI + + M + ++
Sbjct: 63 YFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVE 122
Query: 498 EAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESEN 557
E + ++ +LSG Q+QR+A++RA+VK+PS+LLLDE S LDA +
Sbjct: 123 EVAKIL-DIHHVLNHFPR----ELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRD 177
Query: 558 SVQEALDRV--MVGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELISNPNSAYA 614
S + + V +G T +VV+H + I AD + V+ K+V+ G E+L NP S
Sbjct: 178 SARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDLYDNPVSIQV 237
Query: 615 A 615
A
Sbjct: 238 A 238
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Score = 65.5 bits (159), Expect = 3e-12
Identities = 15/58 (25%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Query: 1018 IELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAG 1075
I ++ V + + +VV + N+ + G+ ++G SG+GK+T + +I P+ G
Sbjct: 4 IIVKNVSKVFK-KGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTG 60
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} Length = 229 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Score = 128 bits (322), Expect = 6e-34
Identities = 71/238 (29%), Positives = 120/238 (50%), Gaps = 18/238 (7%)
Query: 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEI 441
IE + +S + + ++ D L + +G+ ++G +G+GK+ + LI F+ P SG I
Sbjct: 2 IEIESLSRKWK---NFSL-DNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRI 57
Query: 442 LLDGNNIKGLDLKWLRQQIGLVNQEPALF-ATTIRENILYGKDDATMEEITRAAKLSEAM 500
LLDG ++ DL + I V Q +LF +++N+ +G +++ R + +
Sbjct: 58 LLDGKDVT--DLSPEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDL 115
Query: 501 SFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQ 560
L + LSGG++QR+A++RA+V NP ILLLDE SALD ++ + +
Sbjct: 116 KIEHLL--------DRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAR 167
Query: 561 EALDRV--MVGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELISNPNSAYAA 615
E L + T + + H + R AD IAVV K+++ G EE+ P A
Sbjct: 168 EMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEIFEKPVEGRVA 225
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} Length = 229 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Score = 59.7 bits (144), Expect = 2e-10
Identities = 16/59 (27%), Positives = 32/59 (54%), Gaps = 4/59 (6%)
Query: 1018 IELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGK 1076
IE+ + + + + +LKV +G+ ++G +G+GK+ L LI F+ P +G+
Sbjct: 2 IEIESLSRKWKN----FSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGR 56
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 125 bits (315), Expect = 6e-33
Identities = 69/226 (30%), Positives = 111/226 (49%), Gaps = 18/226 (7%)
Query: 400 FDKFCLDI---PAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWL 456
F L++ L+G +G+GKS + LI +P GE+ L+G +I L +
Sbjct: 11 LGNFRLNVDFEMGRDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPE-- 68
Query: 457 RQQIGLVNQEPALFAT-TIRENILYGKDDATMEEI-TRAAKLSEAMSFISNLPERFETQV 514
R+ IG V Q+ ALF ++ NI YG + E R +++E + +
Sbjct: 69 RRGIGFVPQDYALFPHLSVYRNIAYGLRNVERVERDRRVREMAEKL--------GIAHLL 120
Query: 515 GERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRV--MVGRTT 572
+ +LSGG++QR+A++RA+V P +LLLDE SA+D +++ + E L V
Sbjct: 121 DRKPARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPI 180
Query: 573 VVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELISNPNSAYAALV 617
+ V H L AD +AV+ +IV+ G +EL S N A +
Sbjct: 181 LHVTHDLIEAAMLADEVAVMLNGRIVEKGKLKELFSAKNGEVAEFL 226
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 48.9 bits (116), Expect = 1e-06
Identities = 14/44 (31%), Positives = 19/44 (43%), Gaps = 3/44 (6%)
Query: 1036 FKDFNLKV---RAGKSMALVGQSGSGKSTVLSLILRFYDPTAGK 1076
+F L V L+G +G+GKS L LI P G+
Sbjct: 11 LGNFRLNVDFEMGRDYCVLLGPTGAGKSVFLELIAGIVKPDRGE 54
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} Length = 178 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Score = 90.4 bits (223), Expect = 2e-21
Identities = 17/190 (8%), Positives = 40/190 (21%), Gaps = 29/190 (15%)
Query: 413 VALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIGLVNQEPALFAT 472
+ + G G GK+T++ I + + + + I ++ +
Sbjct: 3 IIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTGFRIITTEGKKKIFSSK 62
Query: 473 TIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAIS 532
L G V + + A
Sbjct: 63 FFTSKKLVGS-----------------------------YGVNVQYFEELAIPILERAYR 93
Query: 533 RAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRNADVIAVVQ 592
A ++++DE + V I +
Sbjct: 94 EAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHDPNVNVVATIPIRDVHPLVKEIRRLP 153
Query: 593 GRKIVKTGSH 602
G +++
Sbjct: 154 GAVLIELTPE 163
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} Length = 178 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Score = 43.4 bits (101), Expect = 3e-05
Identities = 7/26 (26%), Positives = 13/26 (50%)
Query: 1050 ALVGQSGSGKSTVLSLILRFYDPTAG 1075
+ G+ G GK+T++ I+ A
Sbjct: 4 IITGEPGVGKTTLVKKIVERLGKRAI 29
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} Length = 189 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Score = 46.6 bits (109), Expect = 3e-06
Identities = 25/191 (13%), Positives = 56/191 (29%), Gaps = 9/191 (4%)
Query: 411 KIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIGLVNQEPALF 470
+ V L G G GK+T+I + + + + + ++
Sbjct: 2 RHVFLTGPPGVGKTTLIHKASEVLKSSGVPVDGFYTEEVRQGGRRIGFDVVTLSGTRGPL 61
Query: 471 ATTIRENILYGKDDATMEEITRAAKLSEAMSFI-----SNLPERFETQVGERGIQLSGGQ 525
+ E ++ + + + + + V + ++
Sbjct: 62 SRVGLEPPPGKRECRVGQYVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFS 121
Query: 526 KQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRNA 585
+ I R + P ++L V+E +R V V +R +
Sbjct: 122 QLFIQAVRQTLSTPGTIILGTIPVPKGKPL-ALVEEIRNRKDVKVFNVTKENRNHLLP-- 178
Query: 586 DVIAVVQ-GRK 595
D++ VQ RK
Sbjct: 179 DIVTCVQSSRK 189
|
| >d2hyda2 f.37.1.1 (A:1-323) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 323 | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: ABC transporter transmembrane region superfamily: ABC transporter transmembrane region family: ABC transporter transmembrane region domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Score = 48.0 bits (112), Expect = 4e-06
Identities = 41/318 (12%), Positives = 96/318 (30%), Gaps = 3/318 (0%)
Query: 686 KLYSMVRPDWTYGVCGTICAIIAGAQMPLFALGVSQALVAYYMDWD-TTQREVKKITILF 744
+ V+P I II L L + A+ + TT +V +TI
Sbjct: 4 RYLQFVKPYKYRIFATIIVGIIKFGIPMLIPLLIKYAIDGVINNHALTTDEKVHHLTIAI 63
Query: 745 CCAAVITVIVHAIEHLSFGIMGERLTLRVREKMFSAILSNEIGWFDEMDNSSSILASRLE 804
A I VIV + + + ++ + + ++ ++ +
Sbjct: 64 GIALFIFVIVRPPIEFIRQYLAQWTSNKILYDIRKKLYNHLQALSARFYANNQVGQVISR 123
Query: 805 SDATLLRTIVVDRSTILIQNFGLVTASFVIAFILNWRITL--VVVATYPLIISGHISEKL 862
+ +T + ++ +T ++ + + L + +P I
Sbjct: 124 VINDVEQTKDFILTGLMNIWLDCITIIIALSIMFFLDVKLTLAALFIFPFYILTVYVFFG 183
Query: 863 FFQGYGGNLSKAYLKANMLAAEAVSNIRTVAAFCSEDKVLELYSRELVEPSKRSFIRGQI 922
+ S+A + E V I V +F ED + + ++ R+ +
Sbjct: 184 RLRKLTRERSQALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDKKNTNFLTRALKHTRW 243
Query: 923 AGIFYGISQFFIFSSYGLALWYGSVLMGKELASFKSVMKSFMVLIVTALAMGETLALVPD 982
+ + + G+ L + ++ L + + +A
Sbjct: 244 NAYSFAAINTVTDIGPIIVIGVGAYLAISGSITVGTLAAFVGYLELLFGPLRRLVASFTT 303
Query: 983 LLKGNQMAASVFEVLDRK 1000
L + VF+++D
Sbjct: 304 LTQSFASMDRVFQLIDED 321
|
| >d2hyda2 f.37.1.1 (A:1-323) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 323 | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: ABC transporter transmembrane region superfamily: ABC transporter transmembrane region family: ABC transporter transmembrane region domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Score = 42.2 bits (97), Expect = 2e-04
Identities = 38/320 (11%), Positives = 96/320 (30%), Gaps = 4/320 (1%)
Query: 45 KLFAFADFYDYILMSLGSIGACVHGVSVPVFFIFFGKLIN--IIGLAYLFPKTASHKVAK 102
+ F Y + I + + + I+ I A + H
Sbjct: 4 RYLQFVKPY-KYRIFATIIVGIIKFGIPMLIPLLIKYAIDGVINNHALTTDEKVHHLTIA 62
Query: 103 YSLDFVYLSVAILFSSWIEVSCWMYTGERQAAKMRMAYLRSMLNQDISLFDTEASTGEVI 162
+ + +I +T + +R + + +
Sbjct: 63 IGIALFIFVIVRPPIEFIRQYLAQWTSNKILYDIRKKLYNHLQALSARFYANNQVGQVIS 122
Query: 163 SAITSDIIVVQDALSEKVGNFMHYISRFLGGFIIGFARVWQISLVTLSIVPLIALAGGMY 222
+ +D+ +D + + N + I F +++L L I P L ++
Sbjct: 123 R-VINDVEQTKDFILTGLMNIWLDCITIIIALSIMFFLDVKLTLAALFIFPFYILTVYVF 181
Query: 223 AYVTIGLIARVRKSYVKAGEIAEEVIGNVRTVQAFAGEDKAVKVYKEALSNTYKYGRKAG 282
L ++ + E + + V++FA ED K + + +N K
Sbjct: 182 FGRLRKLTRERSQALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDKKNTNFLTRALKHT 241
Query: 283 LAKGLGLGSMHCVLFLSWSLLVWYVSVVVHKHISNGGESFTTMLNVVIAGLSLGQAAPDI 342
+++ V + +++ + + G + + + L +
Sbjct: 242 RWNAYSFAAINTVTDIGPIIVIGVGAYLAISGSITVGTLAAFVGYLELLFGPLRRLVASF 301
Query: 343 TAFIRAKAAAYPIFEMIERD 362
T ++ A+ +F++I+ D
Sbjct: 302 TTLTQSFASMDRVFQLIDED 321
|
| >d3b60a2 f.37.1.1 (A:10-328) Multidrug resistance ABC transporter MsbA, N-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 319 | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: ABC transporter transmembrane region superfamily: ABC transporter transmembrane region family: ABC transporter transmembrane region domain: Multidrug resistance ABC transporter MsbA, N-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Score = 45.3 bits (105), Expect = 2e-05
Identities = 37/317 (11%), Positives = 113/317 (35%), Gaps = 4/317 (1%)
Query: 686 KLYSMVRPDWTYGVCGTICAIIAGAQMPLFALGVSQALVAYYMDWDTTQREVKKITILFC 745
+L+ + P + I I+ A + L + D + + + ++
Sbjct: 6 RLWPTIAPFKAGLIVAGIALILNAASDTFMLSLLKPLLDDGFGKTDRSV--LLWMPLVVI 63
Query: 746 CAAVITVIVHAIEHLSFGIMGERLTLRVREKMFSAILSNEIGWFDEMDNSSSILASRLES 805
++ I I + ++ + +R ++F ++ + +FD+ + + SR+
Sbjct: 64 GLMILRGITSYISSYCISWVSGKVVMTMRRRLFGHMMGMPVAFFDKQSTGTLL--SRITY 121
Query: 806 DATLLRTIVVDRSTILIQNFGLVTASFVIAFILNWRITLVVVATYPLIISGHISEKLFFQ 865
D+ + + +++ + F++ F +W++++++V P++ F+
Sbjct: 122 DSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQLSIILVVLAPIVSIAIRVVSKRFR 181
Query: 866 GYGGNLSKAYLKANMLAAEAVSNIRTVAAFCSEDKVLELYSRELVEPSKRSFIRGQIAGI 925
N+ + A + + + V F ++ + + + + + + I
Sbjct: 182 SISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKMRLQGMKMVSASSI 241
Query: 926 FYGISQFFIFSSYGLALWYGSVLMGKELASFKSVMKSFMVLIVTALAMGETLALVPDLLK 985
I Q + L+ S + + ++ F +I + + +
Sbjct: 242 SDPIIQLIASLALAFVLYAASFPSVMDSLTAGTITVVFSSMIALMRPLKSLTNVNAQFQR 301
Query: 986 GNQMAASVFEVLDRKTQ 1002
G ++F +LD + +
Sbjct: 302 GMAACQTLFAILDSEQE 318
|
| >d3b60a2 f.37.1.1 (A:10-328) Multidrug resistance ABC transporter MsbA, N-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 319 | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: ABC transporter transmembrane region superfamily: ABC transporter transmembrane region family: ABC transporter transmembrane region domain: Multidrug resistance ABC transporter MsbA, N-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Score = 44.5 bits (103), Expect = 5e-05
Identities = 45/320 (14%), Positives = 115/320 (35%), Gaps = 7/320 (2%)
Query: 43 LFKLFAFADFYDYILMSLGSIGACVHGVSVPVFFIFFGKLINIIGLAYLFPKTASHKVAK 102
+L+ + + + I ++ S L++ F KT +
Sbjct: 4 FRRLWPTIAPF-KAGLIVAGIALILNAASDTFMLSLLKPLLDDG-----FGKTDRSVLLW 57
Query: 103 YSLDFVYLSVAILFSSWIEVSCWMYTGERQAAKMRMAYLRSMLNQDISLFDTEASTGEVI 162
L + L + +S+I C + + MR M+ ++ FD +++ +
Sbjct: 58 MPLVVIGLMILRGITSYISSYCISWVSGKVVMTMRRRLFGHMMGMPVAFFDKQSTGTLLS 117
Query: 163 SAITSDIIVVQDALSEKVGNFMHYISRFLGGFIIGFARVWQISLVTLSIVPLIALAGGMY 222
V + + + + +G FI+ F WQ+S++ + + P++++A +
Sbjct: 118 RITYDSEQVASSSSGALI-TVVREGASIIGLFIMMFYYSWQLSIILVVLAPIVSIAIRVV 176
Query: 223 AYVTIGLIARVRKSYVKAGEIAEEVIGNVRTVQAFAGEDKAVKVYKEALSNTYKYGRKAG 282
+ + ++ + + AE+++ + V F G++ K + + + G K
Sbjct: 177 SKRFRSISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKMRLQGMKMV 236
Query: 283 LAKGLGLGSMHCVLFLSWSLLVWYVSVVVHKHISNGGESFTTMLNVVIAGLSLGQAAPDI 342
A + + + L+ + +++ S G +++ L
Sbjct: 237 SASSISDPIIQLIASLALAFVLYAASFPSVMDSLTAGTITVVFSSMIALMRPLKSLTNVN 296
Query: 343 TAFIRAKAAAYPIFEMIERD 362
F R AA +F +++ +
Sbjct: 297 AQFQRGMAACQTLFAILDSE 316
|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} Length = 176 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein Atu3015 species: Agrobacterium tumefaciens [TaxId: 358]
Score = 38.8 bits (89), Expect = 0.001
Identities = 24/176 (13%), Positives = 49/176 (27%), Gaps = 20/176 (11%)
Query: 409 AGKIVALVGGSGSGKSTVISLIER----FYEPLSGEILLDGNNIKGLDL----------K 454
G I+ L G GSGKST+ + + L +D
Sbjct: 3 GGNILLLSGHPGSGKSTIAEALANLPGVPKVHFHSDDLWGYIKHGRIDPWLPQSHQQNRM 62
Query: 455 WLRQQIGLVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQV 514
++ + + I + ++ + R + + ER +
Sbjct: 63 IMQIAADVAGRYAKEGYFVILDGVVRPDWLPAFTALARPLHYIVLRTTAAEAIERCLDR- 121
Query: 515 GERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGR 570
+ A + +L S D + ++Q A++ + GR
Sbjct: 122 -GGDSLSDPLVVADLHSQFADLGAFEHHVLP--VSGKDT--DQALQSAINALQSGR 172
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1077 | |||
| d2pmka1 | 241 | Haemolysin B ATP-binding protein {Escherichia coli | 100.0 | |
| d2hyda1 | 255 | Putative multidrug export ATP-binding/permease pro | 100.0 | |
| d3b60a1 | 253 | Multidrug resistance ABC transporter MsbA, C-termi | 100.0 | |
| d1jj7a_ | 251 | Peptide transporter Tap1, C-terminal ABC domain {H | 100.0 | |
| d1mv5a_ | 242 | Multidrug resistance ABC transporter LmrA, C-termi | 100.0 | |
| d1r0wa_ | 281 | Cystic fibrosis transmembrane conductance regulato | 100.0 | |
| d1v43a3 | 239 | Hypothetical protein PH0022, N-terminal domain {Py | 100.0 | |
| d3d31a2 | 229 | Sulfate/molybdate ABC transporter, ATP-binding pro | 100.0 | |
| d2awna2 | 232 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d1oxxk2 | 242 | Glucose transport protein GlcV, N-terminal domain | 100.0 | |
| d3dhwc1 | 240 | Methionine import ATP-binding protein MetN {Escher | 100.0 | |
| d1g2912 | 240 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d1l2ta_ | 230 | MJ0796 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d1b0ua_ | 258 | ATP-binding subunit of the histidine permease {Sal | 100.0 | |
| d1ji0a_ | 240 | Branched chain aminoacid ABC transporter {Thermoto | 100.0 | |
| d1g6ha_ | 254 | MJ1267 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d1vpla_ | 238 | Putative ABC transporter TM0544 {Thermotoga mariti | 100.0 | |
| d2onka1 | 240 | Molybdate/tungstate import ATP-binding protein Wtp | 100.0 | |
| d1l7vc_ | 231 | ABC transporter involved in vitamin B12 uptake, Bt | 100.0 | |
| d1sgwa_ | 200 | Putative ABC transporter PF0895 {Pyrococcus furios | 100.0 | |
| d3b60a2 | 319 | Multidrug resistance ABC transporter MsbA, N-termi | 99.98 | |
| d3b60a2 | 319 | Multidrug resistance ABC transporter MsbA, N-termi | 99.98 | |
| d2hyda2 | 323 | Putative multidrug export ATP-binding/permease pro | 99.97 | |
| d2hyda2 | 323 | Putative multidrug export ATP-binding/permease pro | 99.97 | |
| d1jj7a_ | 251 | Peptide transporter Tap1, C-terminal ABC domain {H | 99.72 | |
| g1f2t.1 | 292 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.72 | |
| d3b60a1 | 253 | Multidrug resistance ABC transporter MsbA, C-termi | 99.67 | |
| d2hyda1 | 255 | Putative multidrug export ATP-binding/permease pro | 99.66 | |
| d2pmka1 | 241 | Haemolysin B ATP-binding protein {Escherichia coli | 99.65 | |
| d1ye8a1 | 178 | Hypothetical kinase-like protein Aq_1292 {Aquifex | 99.48 | |
| d1l2ta_ | 230 | MJ0796 {Archaeon Methanococcus jannaschii [TaxId: | 99.33 | |
| d1v43a3 | 239 | Hypothetical protein PH0022, N-terminal domain {Py | 99.29 | |
| d1g2912 | 240 | Maltose transport protein MalK, N-terminal domain | 99.29 | |
| d3dhwc1 | 240 | Methionine import ATP-binding protein MetN {Escher | 99.29 | |
| d1w1wa_ | 427 | Smc head domain {Baker's yeast (Saccharomyces cere | 99.28 | |
| d1oxxk2 | 242 | Glucose transport protein GlcV, N-terminal domain | 99.27 | |
| d1r0wa_ | 281 | Cystic fibrosis transmembrane conductance regulato | 99.25 | |
| d1ji0a_ | 240 | Branched chain aminoacid ABC transporter {Thermoto | 99.21 | |
| d1g6ha_ | 254 | MJ1267 {Archaeon Methanococcus jannaschii [TaxId: | 99.19 | |
| d1e69a_ | 308 | Smc head domain {Thermotoga maritima [TaxId: 2336] | 99.1 | |
| g1ii8.1 | 369 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 98.92 | |
| g1xew.1 | 329 | Smc head domain {Pyrococcus furiosus [TaxId: 2261] | 98.75 | |
| d1cr2a_ | 277 | Gene 4 protein (g4p, DNA primase), helicase domain | 97.12 | |
| d1ly1a_ | 152 | Polynucleotide kinase, kinase domain {Bacteriophag | 96.6 | |
| d1tf7a2 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 96.59 | |
| d1lv7a_ | 256 | AAA domain of cell division protein FtsH {Escheric | 96.44 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 96.39 | |
| d1g6oa_ | 323 | Hexameric traffic ATPase, HP0525 {Helicobacter pyl | 96.31 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 96.27 | |
| d1g6oa_ | 323 | Hexameric traffic ATPase, HP0525 {Helicobacter pyl | 96.21 | |
| d1ewqa2 | 224 | DNA repair protein MutS, the C-terminal domain {Th | 96.2 | |
| d1nlfa_ | 274 | Hexameric replicative helicase repA {Escherichia c | 96.2 | |
| d1znwa1 | 182 | Guanylate kinase {Mycobacterium tuberculosis [TaxI | 96.08 | |
| d1r7ra3 | 265 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 96.05 | |
| d1tq4a_ | 400 | Interferon-inducible GTPase {Mouse (Mus musculus) | 96.02 | |
| g1ii8.1 | 369 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 95.8 | |
| d2i3ba1 | 189 | Cancer-related NTPase, C1orf57 {Human (Homo sapien | 95.75 | |
| d1h65a_ | 257 | Chloroplast protein translocon GTPase Toc34 {Garde | 95.73 | |
| d1s96a_ | 205 | Guanylate kinase {Escherichia coli [TaxId: 562]} | 95.58 | |
| d1zp6a1 | 176 | Hypothetical protein Atu3015 {Agrobacterium tumefa | 95.55 | |
| d1t9ha2 | 231 | Probable GTPase EngC (YjeQ), C-terminal domain {Ba | 95.42 | |
| d1np6a_ | 170 | Molybdopterin-guanine dinucleotide biosynthesis pr | 95.4 | |
| d1wb9a2 | 234 | DNA repair protein MutS, the C-terminal domain {Es | 95.37 | |
| d1yj5a2 | 172 | 5' polynucleotide kinase-3' phosphatase, C-termina | 95.25 | |
| d1sq5a_ | 308 | Pantothenate kinase PanK {Escherichia coli [TaxId: | 95.13 | |
| d1sxje2 | 252 | Replication factor C5 {Baker's yeast (Saccharomyce | 95.0 | |
| d1y63a_ | 174 | Probable kinase LmjF30.1890 {Leishmania major [Tax | 94.9 | |
| d1m8pa3 | 183 | ATP sulfurylase C-terminal domain {Fungus (Penicil | 94.84 | |
| d2p67a1 | 327 | LAO/AO transport system kinase ArgK {Escherichia c | 94.7 | |
| d1lw7a2 | 192 | Transcriptional regulator NadR, ribosylnicotinamid | 94.67 | |
| d1xjca_ | 165 | Molybdopterin-guanine dinucleotide biosynthesis pr | 94.66 | |
| d1knqa_ | 171 | Gluconate kinase {Escherichia coli [TaxId: 562]} | 94.62 | |
| d1qhxa_ | 178 | Chloramphenicol phosphotransferase {Streptomyces v | 94.58 | |
| d1ak2a1 | 190 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 94.55 | |
| d1khta_ | 190 | Adenylate kinase {Archaeon Methanococcus voltae [T | 94.55 | |
| d1rz3a_ | 198 | Hypothetical protein rbstp0775 {Bacillus stearothe | 94.52 | |
| d2bdta1 | 176 | Hypothetical protein BH3686 {Bacillus halodurans [ | 94.49 | |
| d1kgda_ | 178 | Guanylate kinase-like domain of Cask {Human (Homo | 94.48 | |
| d1sq5a_ | 308 | Pantothenate kinase PanK {Escherichia coli [TaxId: | 94.43 | |
| d1qf9a_ | 194 | UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4 | 94.35 | |
| d1mkya2 | 186 | Probable GTPase Der, N-terminal and middle domains | 94.26 | |
| d1svia_ | 195 | Probable GTPase EngB {Bacillus subtilis [TaxId: 14 | 94.17 | |
| d1uj2a_ | 213 | Uridine-cytidine kinase 2 {Human (Homo sapiens) [T | 94.06 | |
| d1yrba1 | 244 | ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss | 93.99 | |
| d1tq4a_ | 400 | Interferon-inducible GTPase {Mouse (Mus musculus) | 93.91 | |
| d1p9ra_ | 401 | Extracellular secretion NTPase EpsE {Vibrio choler | 93.85 | |
| d1gkya_ | 186 | Guanylate kinase {Baker's yeast (Saccharomyces cer | 93.84 | |
| d3adka_ | 194 | Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | 93.79 | |
| d1p9ra_ | 401 | Extracellular secretion NTPase EpsE {Vibrio choler | 93.71 | |
| d1ukza_ | 196 | Uridylate kinase {Baker's yeast (Saccharomyces cer | 93.69 | |
| d1x6va3 | 195 | Adenosine-5'phosphosulfate kinase (APS kinase) {Hu | 93.62 | |
| d1h65a_ | 257 | Chloroplast protein translocon GTPase Toc34 {Garde | 93.57 | |
| d1rkba_ | 173 | Adenylate kinase {Human (Homo sapiens), isoenzyme | 93.5 | |
| d1kaga_ | 169 | Shikimate kinase (AroK) {Escherichia coli [TaxId: | 93.4 | |
| d2p67a1 | 327 | LAO/AO transport system kinase ArgK {Escherichia c | 93.35 | |
| d2cxxa1 | 184 | GTP-binding protein engB {Pyrococcus horikoshii [T | 93.26 | |
| d1lvga_ | 190 | Guanylate kinase {Mouse (Mus musculus) [TaxId: 100 | 93.25 | |
| d1mkya1 | 171 | Probable GTPase Der, N-terminal and middle domains | 93.23 | |
| d2gj8a1 | 161 | Probable tRNA modification GTPase TrmE (MnmE), G d | 93.15 | |
| d1gvnb_ | 273 | Plasmid maintenance system epsilon/zeta, toxin zet | 93.1 | |
| d1n0wa_ | 242 | DNA repair protein Rad51, catalytic domain {Human | 92.96 | |
| d1nrjb_ | 209 | Signal recognition particle receptor beta-subunit | 92.88 | |
| d1wf3a1 | 178 | GTPase Era, N-terminal domain {Thermus thermophilu | 92.87 | |
| d1p5zb_ | 241 | Deoxycytidine kinase {Human (Homo sapiens) [TaxId: | 92.83 | |
| d1bifa1 | 213 | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphata | 92.54 | |
| d1m7ga_ | 208 | Adenosine-5'phosphosulfate kinase (APS kinase) {Fu | 92.5 | |
| d1lnza2 | 185 | Obg GTP-binding protein middle domain {Bacillus su | 92.39 | |
| d1nn5a_ | 209 | Thymidylate kinase {Human (Homo sapiens) [TaxId: 9 | 92.37 | |
| d1teva_ | 194 | UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606] | 92.36 | |
| d4tmka_ | 210 | Thymidylate kinase {Escherichia coli [TaxId: 562]} | 92.29 | |
| d1zina1 | 182 | Adenylate kinase {Bacillus stearothermophilus [Tax | 92.27 | |
| d1q3ta_ | 223 | CMP kinase {Streptococcus pneumoniae [TaxId: 1313] | 92.23 | |
| d2qm8a1 | 323 | Metallochaperone MeaB {Methylobacterium extorquens | 92.23 | |
| d1s3ga1 | 182 | Adenylate kinase {Bacillus globisporus [TaxId: 145 | 92.19 | |
| d1okkd2 | 207 | GTPase domain of the signal recognition particle r | 92.08 | |
| d1egaa1 | 179 | GTPase Era, N-terminal domain {Escherichia coli [T | 92.05 | |
| d2vp4a1 | 197 | Deoxyribonucleoside kinase {Fruit fly (Drosophila | 91.99 | |
| d1uf9a_ | 191 | Dephospho-CoA kinase {Thermus thermophilus [TaxId: | 91.93 | |
| d1e6ca_ | 170 | Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax | 91.85 | |
| d1f6ba_ | 186 | SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: | 91.83 | |
| d1upta_ | 169 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 91.81 | |
| d1zaka1 | 189 | Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | 91.81 | |
| d1r8sa_ | 160 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 91.77 | |
| d1tmka_ | 214 | Thymidylate kinase {Baker's yeast (Saccharomyces c | 91.6 | |
| d1udxa2 | 180 | Obg GTP-binding protein middle domain {Thermus the | 91.6 | |
| d1jjva_ | 205 | Dephospho-CoA kinase {Haemophilus influenzae [TaxI | 91.56 | |
| d1ckea_ | 225 | CMP kinase {Escherichia coli [TaxId: 562]} | 91.51 | |
| d1viaa_ | 161 | Shikimate kinase (AroK) {Campylobacter jejuni [Tax | 91.42 | |
| d2fh5b1 | 207 | Signal recognition particle receptor beta-subunit | 91.39 | |
| d1ofha_ | 309 | HslU {Haemophilus influenzae [TaxId: 727]} | 91.38 | |
| d1szpa2 | 251 | DNA repair protein Rad51, catalytic domain {Baker' | 91.36 | |
| d1xpua3 | 289 | Transcription termination factor Rho, ATPase domai | 91.33 | |
| d1qhla_ | 222 | Cell division protein MukB {Escherichia coli [TaxI | 91.32 | |
| d1nksa_ | 194 | Adenylate kinase {Archaeon Sulfolobus acidocaldari | 91.3 | |
| d1sxja2 | 253 | Replication factor C1 {Baker's yeast (Saccharomyce | 91.27 | |
| d1ksha_ | 165 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 91.24 | |
| d1in4a2 | 238 | Holliday junction helicase RuvB {Thermotoga mariti | 91.21 | |
| d1wb1a4 | 179 | Elongation factor SelB, N-terminal domain {Methano | 91.19 | |
| d1e4va1 | 179 | Adenylate kinase {Escherichia coli [TaxId: 562]} | 91.11 | |
| d1g41a_ | 443 | HslU {Haemophilus influenzae [TaxId: 727]} | 91.05 | |
| d2qtvb1 | 166 | SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 91.0 | |
| d2ak3a1 | 189 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 90.92 | |
| d1ofha_ | 309 | HslU {Haemophilus influenzae [TaxId: 727]} | 90.8 | |
| d2qm8a1 | 323 | Metallochaperone MeaB {Methylobacterium extorquens | 90.72 | |
| d2cdna1 | 181 | Adenylate kinase {Mycobacterium tuberculosis [TaxI | 90.69 | |
| d2qy9a2 | 211 | GTPase domain of the signal recognition particle r | 90.63 | |
| d2iyva1 | 165 | Shikimate kinase (AroK) {Mycobacterium tuberculosi | 90.5 | |
| d1g7sa4 | 227 | Initiation factor IF2/eIF5b, N-terminal (G) domain | 90.48 | |
| d2erxa1 | 171 | di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 90.43 | |
| d1pzna2 | 254 | DNA repair protein Rad51, catalytic domain {Archae | 90.43 | |
| d1v5wa_ | 258 | Meiotic recombination protein DMC1/LIM15 homolog { | 90.39 | |
| d1ky3a_ | 175 | Rab-related protein ypt7p {Baker's yeast (Saccharo | 90.38 | |
| d2fnaa2 | 283 | Archaeal ATPase SSO1545 {Sulfolobus solfataricus [ | 90.36 | |
| d1puia_ | 188 | Probable GTPase EngB {Escherichia coli [TaxId: 562 | 90.23 | |
| d1fnna2 | 276 | CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T | 90.22 | |
| d1svma_ | 362 | Papillomavirus large T antigen helicase domain {Si | 90.2 | |
| d1tf7a1 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 90.13 | |
| d1odfa_ | 286 | Hypothetical protein Ygr205W {Baker's yeast (Sacch | 90.1 | |
| d1kkma_ | 176 | HPr kinase HprK C-terminal domain {Lactobacillus c | 90.03 | |
| d1vhta_ | 208 | Dephospho-CoA kinase {Escherichia coli [TaxId: 562 | 89.97 | |
| d1akya1 | 180 | Adenylate kinase {Baker's yeast (Saccharomyces cer | 89.93 | |
| d1knxa2 | 177 | HPr kinase HprK C-terminal domain {Mycoplasma pneu | 89.78 | |
| d1u94a1 | 263 | RecA protein, ATPase-domain {Escherichia coli [Tax | 89.74 | |
| d2i1qa2 | 258 | DNA repair protein Rad51, catalytic domain {Archae | 89.72 | |
| d2fnaa2 | 283 | Archaeal ATPase SSO1545 {Sulfolobus solfataricus [ | 89.65 | |
| d2erya1 | 171 | r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 89.62 | |
| d1zj6a1 | 177 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 89.61 | |
| d1vmaa2 | 213 | GTPase domain of the signal recognition particle r | 89.5 | |
| d1ixza_ | 247 | AAA domain of cell division protein FtsH {Thermus | 89.45 | |
| d1a7ja_ | 288 | Phosphoribulokinase {Rhodobacter sphaeroides [TaxI | 89.33 | |
| d1jwyb_ | 306 | Dynamin G domain {Dictyostelium discoideum [TaxId: | 89.21 | |
| d1v5wa_ | 258 | Meiotic recombination protein DMC1/LIM15 homolog { | 89.13 | |
| d3raba_ | 169 | Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | 89.1 | |
| d1pzna2 | 254 | DNA repair protein Rad51, catalytic domain {Archae | 89.04 | |
| d1f5na2 | 277 | Interferon-induced guanylate-binding protein 1 (GB | 88.91 | |
| d1htwa_ | 158 | Hypothetical protein HI0065 {Haemophilus influenza | 88.87 | |
| d1iqpa2 | 231 | Replication factor C {Archaeon Pyrococcus furiosus | 88.72 | |
| d1ixsb2 | 239 | Holliday junction helicase RuvB {Thermus thermophi | 88.65 | |
| d1e32a2 | 258 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 88.51 | |
| d1cr2a_ | 277 | Gene 4 protein (g4p, DNA primase), helicase domain | 88.42 | |
| d2akab1 | 299 | Dynamin G domain {Rat (Rattus norvegicus) [TaxId: | 88.42 | |
| d1sxjd2 | 237 | Replication factor C2 {Baker's yeast (Saccharomyce | 88.37 | |
| d1vg8a_ | 184 | Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | 88.36 | |
| d2f9la1 | 175 | Rab11b {Human (Homo sapiens) [TaxId: 9606]} | 88.35 | |
| d1yzqa1 | 164 | Rab6 {Human (Homo sapiens) [TaxId: 9606]} | 88.32 | |
| d1wmsa_ | 174 | Rab9a {Human (Homo sapiens) [TaxId: 9606]} | 88.19 | |
| d2atva1 | 168 | Ras-like estrogen-regulated growth inhibitor, RERG | 88.18 | |
| d2dy1a2 | 267 | Elongation factor G (EF-G), N-terminal (G) domain | 88.16 | |
| d1j8yf2 | 211 | GTPase domain of the signal sequence recognition p | 88.15 | |
| d1gsia_ | 208 | Thymidylate kinase {Mycobacterium tuberculosis [Ta | 88.15 | |
| d1kk1a3 | 195 | Initiation factor eIF2 gamma subunit, N-terminal ( | 88.11 | |
| d1fzqa_ | 176 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 88.06 | |
| d1g41a_ | 443 | HslU {Haemophilus influenzae [TaxId: 727]} | 88.01 | |
| d1z2aa1 | 164 | Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | 88.0 | |
| d1xzpa2 | 160 | TrmE GTPase domain {Thermotoga maritima [TaxId: 23 | 87.94 | |
| d2f7sa1 | 186 | Rab27b {Human (Homo sapiens) [TaxId: 9606]} | 87.94 | |
| d2bmja1 | 175 | Centaurin gamma 1, G domain {Human (Homo sapiens) | 87.93 | |
| d1d2na_ | 246 | Hexamerization domain of N-ethylmalemide-sensitive | 87.85 | |
| d1ctqa_ | 166 | cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9 | 87.82 | |
| d1deka_ | 241 | Deoxynucleoside monophosphate kinase {Bacteriophag | 87.73 | |
| d2a5ja1 | 173 | Rab2b {Human (Homo sapiens) [TaxId: 9606]} | 87.69 | |
| d1xtqa1 | 167 | GTP-binding protein RheB {Human (Homo sapiens) [Ta | 87.6 | |
| d2jdid3 | 276 | Central domain of beta subunit of F1 ATP synthase | 87.59 | |
| d1u8za_ | 168 | Ras-related protein RalA {Cotton-top tamarin (Sagu | 87.51 | |
| d1kaoa_ | 167 | Rap2a {Human (Homo sapiens) [TaxId: 9606]} | 87.46 | |
| d1fnna2 | 276 | CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T | 87.31 | |
| d1zd9a1 | 164 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 87.31 | |
| d1x1ra1 | 169 | Ras-related protein M-Ras (XRas) {Mouse (Mus muscu | 87.27 | |
| d2gjsa1 | 168 | Rad {Human (Homo sapiens) [TaxId: 9606]} | 87.17 | |
| d1p6xa_ | 333 | Thymidine kinase {Equine herpesvirus type 4 [TaxId | 87.15 | |
| d1wxqa1 | 319 | GTP-binding protein PH0525 {Pyrococcus horikoshii | 87.13 | |
| d2g3ya1 | 172 | GTP-binding protein GEM {Human (Homo sapiens) [Tax | 87.13 | |
| d1nlfa_ | 274 | Hexameric replicative helicase repA {Escherichia c | 87.07 | |
| d1mo6a1 | 269 | RecA protein, ATPase-domain {Mycobacterium tubercu | 86.96 | |
| d1xpua3 | 289 | Transcription termination factor Rho, ATPase domai | 86.95 | |
| d1xp8a1 | 268 | RecA protein, ATPase-domain {Deinococcus radiodura | 86.92 | |
| d1g16a_ | 166 | Rab-related protein Sec4 {Baker's yeast (Saccharom | 86.91 | |
| d2c78a3 | 204 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 86.85 | |
| d2ew1a1 | 171 | Rab30 {Human (Homo sapiens) [TaxId: 9606]} | 86.8 | |
| d1lv7a_ | 256 | AAA domain of cell division protein FtsH {Escheric | 86.63 | |
| d1u94a1 | 263 | RecA protein, ATPase-domain {Escherichia coli [Tax | 86.5 | |
| d1mh1a_ | 183 | Rac {Human (Homo sapiens) [TaxId: 9606]} | 86.42 | |
| d2ocpa1 | 241 | Deoxyguanosine kinase {Human (Homo sapiens) [TaxId | 86.38 | |
| d1m7ba_ | 179 | RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | 86.35 | |
| d1iqpa2 | 231 | Replication factor C {Archaeon Pyrococcus furiosus | 86.25 | |
| d1ni3a1 | 296 | YchF GTP-binding protein N-terminal domain {Fissio | 86.2 | |
| d2bcgy1 | 194 | GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi | 86.1 | |
| d1sxjd2 | 237 | Replication factor C2 {Baker's yeast (Saccharomyce | 86.09 | |
| d1z0fa1 | 166 | Rab14 {Human (Homo sapiens) [TaxId: 9606]} | 85.97 | |
| d1kmqa_ | 177 | RhoA {Human (Homo sapiens) [TaxId: 9606]} | 85.88 | |
| d1x3sa1 | 177 | Rab18 {Human (Homo sapiens) [TaxId: 9606]} | 85.85 | |
| d1z06a1 | 165 | Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | 85.55 | |
| d1ek0a_ | 170 | Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T | 85.36 | |
| d2fn4a1 | 173 | r-Ras {Human (Homo sapiens) [TaxId: 9606]} | 85.34 | |
| d2bmea1 | 174 | Rab4a {Human (Homo sapiens) [TaxId: 9606]} | 85.28 | |
| d1z08a1 | 167 | Rab21 {Human (Homo sapiens) [TaxId: 9606]} | 85.26 | |
| d1sxjb2 | 224 | Replication factor C4 {Baker's yeast (Saccharomyce | 85.25 | |
| d1z0ja1 | 167 | Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | 85.17 | |
| d1sxja2 | 253 | Replication factor C1 {Baker's yeast (Saccharomyce | 85.04 | |
| d1azta2 | 221 | Transducin (alpha subunit) {Cow (Bos taurus) [TaxI | 85.01 | |
| d1puja_ | 273 | Probable GTPase YlqF {Bacillus subtilis [TaxId: 14 | 84.95 | |
| d1r2qa_ | 170 | Rab5a {Human (Homo sapiens) [TaxId: 9606]} | 84.73 | |
| d2bv3a2 | 276 | Elongation factor G (EF-G), N-terminal (G) domain | 84.73 | |
| d1ko7a2 | 169 | HPr kinase HprK C-terminal domain {Staphylococcus | 84.57 | |
| d1r6bx3 | 315 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 84.5 | |
| d1sxjc2 | 227 | Replication factor C3 {Baker's yeast (Saccharomyce | 84.29 | |
| d2qn6a3 | 205 | Initiation factor eIF2 gamma subunit, N-terminal ( | 84.19 | |
| d1w44a_ | 321 | NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | 83.91 | |
| d2g6ba1 | 170 | Rab26 {Human (Homo sapiens) [TaxId: 9606]} | 83.71 | |
| d1moza_ | 182 | ADP-ribosylation factor {Baker's yeast (Saccharomy | 83.7 | |
| d2fu5c1 | 173 | Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | 83.55 | |
| d2jdid3 | 276 | Central domain of beta subunit of F1 ATP synthase | 83.49 | |
| d1e9ra_ | 433 | Bacterial conjugative coupling protein TrwB {Esche | 83.48 | |
| d2atxa1 | 185 | RhoQ {Human (Homo sapiens) [TaxId: 9606]} | 83.41 | |
| d1in4a2 | 238 | Holliday junction helicase RuvB {Thermotoga mariti | 83.32 | |
| d1r7ra3 | 265 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 83.13 | |
| d1sxjb2 | 224 | Replication factor C4 {Baker's yeast (Saccharomyce | 83.0 | |
| d1i2ma_ | 170 | Ran {Human (Homo sapiens) [TaxId: 9606]} | 82.96 | |
| d1fx0a3 | 276 | Central domain of alpha subunit of F1 ATP synthase | 82.93 | |
| d1c1ya_ | 167 | Rap1A {Human (Homo sapiens) [TaxId: 9606]} | 82.93 | |
| d1svsa1 | 195 | Transducin (alpha subunit) {Rat (Rattus norvegicus | 82.92 | |
| d2ngra_ | 191 | CDC42 {Human (Homo sapiens) [TaxId: 9606]} | 82.69 | |
| d1jala1 | 278 | YchF GTP-binding protein N-terminal domain {Haemop | 82.64 | |
| d2a5yb3 | 277 | CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI | 82.52 | |
| d1sxjc2 | 227 | Replication factor C3 {Baker's yeast (Saccharomyce | 82.42 | |
| d1osna_ | 331 | Thymidine kinase {Varicella-zoster virus [TaxId: 1 | 82.4 | |
| d1ixsb2 | 239 | Holliday junction helicase RuvB {Thermus thermophi | 82.31 | |
| d1htwa_ | 158 | Hypothetical protein HI0065 {Haemophilus influenza | 82.07 | |
| d1zunb3 | 222 | Sulfate adenylate transferase subunit cysN/C, EF-T | 82.04 | |
| d1w5sa2 | 287 | CDC6-like protein APE0152, N-terminal domain {Aero | 81.98 | |
| d1e9ra_ | 433 | Bacterial conjugative coupling protein TrwB {Esche | 81.71 | |
| d1u0ja_ | 267 | Rep 40 protein helicase domain {Adeno-associated v | 81.47 | |
| d1d2na_ | 246 | Hexamerization domain of N-ethylmalemide-sensitive | 81.3 | |
| d1r6bx3 | 315 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 81.08 | |
| d1e0sa_ | 173 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 81.07 | |
| d1e32a2 | 258 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 81.07 | |
| d2jdia3 | 285 | Central domain of alpha subunit of F1 ATP synthase | 80.84 | |
| d1sxje2 | 252 | Replication factor C5 {Baker's yeast (Saccharomyce | 80.34 | |
| d1um8a_ | 364 | ClpX {Helicobacter pylori [TaxId: 210]} | 80.09 | |
| d1zcba2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 80.01 |
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=475.63 Aligned_cols=240 Identities=47% Similarity=0.772 Sum_probs=231.6
Q ss_pred CEEEEEEEEECCCCCCCCCCCCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHHHE
Q ss_conf 18998689985999996420000388529969999839999589999999604679841799999527999978874204
Q 001438 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQI 460 (1077)
Q Consensus 381 ~i~~~~v~f~y~~~~~~~~l~~~~~~i~~g~~~~ivG~~GsGKStl~~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i 460 (1077)
+|+|+||+|+|+.. .+++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||+|+.+++..++|+++
T Consensus 1 eI~~~nvsf~Y~~~-~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~lr~~i 79 (241)
T d2pmka1 1 DITFRNIRFRYKPD-SPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQV 79 (241)
T ss_dssp EEEEEEEEEESSTT-SCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHE
T ss_pred CEEEEEEEEEECCC-CCCEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCEEEECCEEECCCCHHHHHCEE
T ss_conf 92999999990899-96037424899849999999999999899999999735788888999999994400246553528
Q ss_pred EEECCCCCCCCCCHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCC
Q ss_conf 68806787640018999853999999999999999970999884185210102029999999489999999998513998
Q 001438 461 GLVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPS 540 (1077)
Q Consensus 461 ~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~ig~~g~~lSgGqkqri~lARal~~~~~ 540 (1077)
+||+|+|++|++||+|||.++.++.+.+++..+++.+++.+++..+|.|++|.++++|.+||||||||++||||++++|+
T Consensus 80 ~~v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~t~i~~~g~~LSGGq~QRvalARal~~~p~ 159 (241)
T d2pmka1 80 GVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPK 159 (241)
T ss_dssp EEECSSCCCTTSBHHHHHCTTSTTCCHHHHHHHHHHHTCHHHHTTSTTGGGSBCSTTTTCCCHHHHHHHHHHHHHTTCCS
T ss_pred EEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCC
T ss_conf 89824465578400035223575543888999999975578887632013443278788669889898754434441651
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHCCEEEEEECCEEEEECCHHHHHCCCCCHHHHHHHHH
Q ss_conf 99982768899989899999999987079739998259236750398999979889996294688509993689999999
Q 001438 541 ILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRNADVIAVVQGRKIVKTGSHEELISNPNSAYAALVQLQ 620 (1077)
Q Consensus 541 illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~l~~~~ 620 (1077)
|+|||||||+||+.+++.+.+.+.++.+++|+|+||||++.++.||+|++|++|+|+++|+|+||++++++.|++|++.|
T Consensus 160 ililDEpts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~~~D~i~vl~~G~Iv~~G~~~ell~~~~~~y~~l~~~Q 239 (241)
T d2pmka1 160 ILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQLQ 239 (241)
T ss_dssp EEEECCCCSCCCHHHHHHHHHHHHHHHTTSEEEEECSSGGGGTTSSEEEEEETTEEEEEECHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHCCEEEEEECCEEEEECCHHHHHHCCCCHHHHHHHHH
T ss_conf 35564776555989999999999998589989999788999984999999989999998899999829987899999981
Q ss_pred H
Q ss_conf 9
Q 001438 621 E 621 (1077)
Q Consensus 621 ~ 621 (1077)
.
T Consensus 240 ~ 240 (241)
T d2pmka1 240 S 240 (241)
T ss_dssp C
T ss_pred C
T ss_conf 3
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=100.00 E-value=0 Score=478.85 Aligned_cols=242 Identities=53% Similarity=0.803 Sum_probs=232.6
Q ss_pred CCCCCEEEEEEEEECCCCCCCCCCCCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHH
Q ss_conf 87641899868998599999642000038852996999983999958999999960467984179999952799997887
Q 001438 377 KLSGHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWL 456 (1077)
Q Consensus 377 ~~~~~i~~~~v~f~y~~~~~~~~l~~~~~~i~~g~~~~ivG~~GsGKStl~~~l~~~~~~~~G~i~~~g~~~~~~~~~~~ 456 (1077)
..+|.|+++||+|+|++. +.++|+|+||+|++|++++|+|+||||||||+++|.|+++|++|+|.++|.|+++++..++
T Consensus 12 ~~~g~I~~~nvsf~Y~~~-~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~l 90 (255)
T d2hyda1 12 IKQGRIDIDHVSFQYNDN-EAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSL 90 (255)
T ss_dssp CCSCCEEEEEEEECSCSS-SCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCHHHH
T ss_pred CCCCEEEEEEEEEEECCC-CCCCEECEEEEECCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCEECCCCCHHHH
T ss_conf 778879999889995999-9760644389983998999988999809999999971278630001539987530788886
Q ss_pred HHHEEEECCCCCCCCCCHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCCHHHHHHHHHHHHHC
Q ss_conf 42046880678764001899985399999999999999997099988418521010202999999948999999999851
Q 001438 457 RQQIGLVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIV 536 (1077)
Q Consensus 457 r~~i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~ig~~g~~lSgGqkqri~lARal~ 536 (1077)
|++++||+|+|++|++||+|||++|.++.+++++.++++.+++++++..+|+|++|.++++|.+||||||||++||||++
T Consensus 91 r~~i~~v~Q~~~lf~~Ti~eNi~~g~~~~~~~~~~~al~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~QRi~iARal~ 170 (255)
T d2hyda1 91 RNQIGLVQQDNILFSDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFL 170 (255)
T ss_dssp HHTEEEECSSCCCCSSBHHHHHGGGCSSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHHHH
T ss_pred HHEEEEEECCCCCCCCCHHHHHHCCCCCCCHHHHHHHHHHHCCHHHHHHCCCCCCCHHCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 34145651015689987999985158679999999999996979999736242010333888984999999999999985
Q ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHCCEEEEEECCEEEEECCHHHHHCCCCCHHHHH
Q ss_conf 39989998276889998989999999998707973999825923675039899997988999629468850999368999
Q 001438 537 KNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRNADVIAVVQGRKIVKTGSHEELISNPNSAYAAL 616 (1077)
Q Consensus 537 ~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~l 616 (1077)
++|+|+|||||||+||++++..+.+.+.++.+++|+|+||||++.+..||+|++|++|+|++.|+|+||+++ ++.|+++
T Consensus 171 ~~p~ililDEpts~LD~~t~~~i~~~l~~l~~~~TvI~itH~~~~~~~~D~ii~l~~G~iv~~G~~~eLl~~-~~~y~~l 249 (255)
T d2hyda1 171 NNPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTITHADKIVVIENGHIVETGTHRELIAK-QGAYEHL 249 (255)
T ss_dssp HCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSSGGGTTTCSEEEEEETTEEEEEECHHHHHHT-TSHHHHH
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHCCEEEEEECCEEEEECCHHHHHHC-CCHHHHH
T ss_conf 599899983765447977999999999987538889999689999985999999989999998899999868-8499999
Q ss_pred HHHH
Q ss_conf 9999
Q 001438 617 VQLQ 620 (1077)
Q Consensus 617 ~~~~ 620 (1077)
++.|
T Consensus 250 ~~~Q 253 (255)
T d2hyda1 250 YSIQ 253 (255)
T ss_dssp HTTT
T ss_pred HHHC
T ss_conf 9974
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=0 Score=468.91 Aligned_cols=243 Identities=49% Similarity=0.801 Sum_probs=232.0
Q ss_pred CCCCCCEEEEEEEEECCCCCCCCCCCCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHH
Q ss_conf 88764189986899859999964200003885299699998399995899999996046798417999995279999788
Q 001438 376 DKLSGHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKW 455 (1077)
Q Consensus 376 ~~~~~~i~~~~v~f~y~~~~~~~~l~~~~~~i~~g~~~~ivG~~GsGKStl~~~l~~~~~~~~G~i~~~g~~~~~~~~~~ 455 (1077)
+...|.|+|+||+|+|+++ +.++|+|+||+|++||++|||||||||||||+++|+|+++|++|+|.+||.|+.+++..+
T Consensus 8 ~~~~g~I~~~nvsf~Y~~~-~~~~L~~isl~i~~Ge~iaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~ 86 (253)
T d3b60a1 8 DRATGDLEFRNVTFTYPGR-EVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLAS 86 (253)
T ss_dssp SCCCCCEEEEEEEECSSSS-SCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCHHH
T ss_pred CCCCEEEEEEEEEEEECCC-CCCEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCCCCCHHHHHH
T ss_conf 7783079999889992999-976353328998599999999999985999999986216888468987880121110665
Q ss_pred HHHHEEEECCCCCCCCCCHHHHHHCCC-CCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCCHHHHHHHHHHHH
Q ss_conf 742046880678764001899985399-9999999999999970999884185210102029999999489999999998
Q 001438 456 LRQQIGLVNQEPALFATTIRENILYGK-DDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRA 534 (1077)
Q Consensus 456 ~r~~i~~v~Q~~~lf~~ti~~Ni~~~~-~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~ig~~g~~lSgGqkqri~lARa 534 (1077)
+|++++|++|+|++|++|+++|+.++. +..+++++.++++.+++.++++.+|+|++|.++++|.+||||||||++||||
T Consensus 87 ~r~~i~~v~Q~~~l~~~ti~~n~~~~~~~~~~~~~i~~a~~~~~l~~~i~~l~~gl~t~~~~~~~~LSGGqkQRvaiARa 166 (253)
T d3b60a1 87 LRNQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARA 166 (253)
T ss_dssp HHHTEEEECSSCCCCSSBHHHHHHTTTTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHH
T ss_pred HHHEEEEEEECCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCCCCHHHHHHHHHHHH
T ss_conf 42068799502544786202433205722089999999999981799997355441014348889849999999999999
Q ss_pred HCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHCCEEEEEECCEEEEECCHHHHHCCCCCHHH
Q ss_conf 51399899982768899989899999999987079739998259236750398999979889996294688509993689
Q 001438 535 IVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRNADVIAVVQGRKIVKTGSHEELISNPNSAYA 614 (1077)
Q Consensus 535 l~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~ 614 (1077)
++++|+|+|||||||+||+.++..+.+.+.++.+++|+|+||||++.+..||+|++|++|+|+++|+|+||+++ ++.|+
T Consensus 167 l~~~p~ililDEpts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~~~D~v~vl~~G~Iv~~G~~~eLl~~-~~~y~ 245 (253)
T d3b60a1 167 LLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEQADEIVVVEDGIIVERGTHSELLAQ-HGVYA 245 (253)
T ss_dssp HHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHTTSEEEEECSCGGGTTTCSEEEEEETTEEEEEECHHHHHHH-TSSHH
T ss_pred HHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHCCEEEEEECCEEEEECCHHHHHHC-CCHHH
T ss_conf 95499889951644458988999999999875227889999887999985999999989999998899999868-93999
Q ss_pred HHHHHH
Q ss_conf 999999
Q 001438 615 ALVQLQ 620 (1077)
Q Consensus 615 ~l~~~~ 620 (1077)
+|++.|
T Consensus 246 ~l~~~Q 251 (253)
T d3b60a1 246 QLHKMQ 251 (253)
T ss_dssp HHHHHT
T ss_pred HHHHHC
T ss_conf 999972
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=0 Score=462.83 Aligned_cols=241 Identities=43% Similarity=0.752 Sum_probs=228.1
Q ss_pred CCCCCEEEEEEEEECCCCCCCCCCCCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHH
Q ss_conf 87641899868998599999642000038852996999983999958999999960467984179999952799997887
Q 001438 377 KLSGHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWL 456 (1077)
Q Consensus 377 ~~~~~i~~~~v~f~y~~~~~~~~l~~~~~~i~~g~~~~ivG~~GsGKStl~~~l~~~~~~~~G~i~~~g~~~~~~~~~~~ 456 (1077)
..+|.|+|+||+|+|+++++..+|+|+||+|++||+++||||||||||||+++|+|+++|++|+|.+||+|+.+++..++
T Consensus 7 ~~~g~I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~li~gl~~p~~G~I~i~g~~i~~~~~~~~ 86 (251)
T d1jj7a_ 7 HLEGLVQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTGGQLLLDGKPLPQYEHRYL 86 (251)
T ss_dssp CCCCCEEEEEEEECCTTSTTCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHH
T ss_pred CCCCEEEEEEEEEECCCCCCCEEEECEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCHHHHHHH
T ss_conf 65336999998998899999976744389984998999999999849999999861437876899889985311013788
Q ss_pred HHHEEEECCCCCCCCCCHHHHHHCCC-CCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 42046880678764001899985399-99999999999999709998841852101020299999994899999999985
Q 001438 457 RQQIGLVNQEPALFATTIRENILYGK-DDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAI 535 (1077)
Q Consensus 457 r~~i~~v~Q~~~lf~~ti~~Ni~~~~-~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~ig~~g~~lSgGqkqri~lARal 535 (1077)
|++++||+|+|++|++|++||+.+|. +....+++..++....+.+++..+|+|++|.++++|.+||||||||++||||+
T Consensus 87 r~~i~~v~Q~~~lf~~tv~eni~~g~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~i~~~~~~LSGGqkQRvaiARal 166 (251)
T d1jj7a_ 87 HRQVAAVGQEPQVFGRSLQENIAYGLTQKPTMEEITAAAVKSGAHSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARAL 166 (251)
T ss_dssp HHHEEEECSSCCCCSSBHHHHHHCSCSSCCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCCSSCSSSCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCHHHCEEEEEEECC
T ss_conf 87765404565002763465545421013027889999999989999985612111367516766895470489986044
Q ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHC--CCEEEEECCCCHHHHHCCEEEEEECCEEEEECCHHHHHCCCCCHH
Q ss_conf 139989998276889998989999999998707--973999825923675039899997988999629468850999368
Q 001438 536 VKNPSILLLDEATSALDAESENSVQEALDRVMV--GRTTVVVAHRLSTIRNADVIAVVQGRKIVKTGSHEELISNPNSAY 613 (1077)
Q Consensus 536 ~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~ 613 (1077)
+++|+|+|||||||+||+.++..+.+.+.++.+ ++|+|+|||+++.+..||+|++|++|+|+++|+|+||+++ ++.|
T Consensus 167 ~~~p~ililDEpTs~LD~~~~~~i~~~l~~l~~~~~~Tvi~itH~l~~~~~aDrI~vl~~G~iv~~Gt~~eLl~~-~~~y 245 (251)
T d1jj7a_ 167 IRKPCVLILDDATSALDANSQLQVEQLLYESPERYSRSVLLITQHLSLVEQADHILFLEGGAIREGGTHQQLMEK-KGCY 245 (251)
T ss_dssp TTCCSEEEEESTTTTCCHHHHHHHHHHHHTCGGGGGCEEEEECSCHHHHHTCSEEEEEETTEEEEEECHHHHHHH-TSHH
T ss_pred CCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHCCEEEEEECCEEEEECCHHHHHHC-CCHH
T ss_conf 568707871675765685368999999999765069899999597999985999999989999998899999859-7588
Q ss_pred HHHHH
Q ss_conf 99999
Q 001438 614 AALVQ 618 (1077)
Q Consensus 614 ~~l~~ 618 (1077)
+.|++
T Consensus 246 ~~l~~ 250 (251)
T d1jj7a_ 246 WAMVQ 250 (251)
T ss_dssp HHHHC
T ss_pred HHHHC
T ss_conf 99962
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Probab=100.00 E-value=0 Score=460.12 Aligned_cols=236 Identities=47% Similarity=0.771 Sum_probs=225.4
Q ss_pred EEEEEEEEECCCCCCCCCCCCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHHHEE
Q ss_conf 89986899859999964200003885299699998399995899999996046798417999995279999788742046
Q 001438 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIG 461 (1077)
Q Consensus 382 i~~~~v~f~y~~~~~~~~l~~~~~~i~~g~~~~ivG~~GsGKStl~~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 461 (1077)
|+++||+|+|++. +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.+||+|+.+++..++|++++
T Consensus 2 le~knvsf~Y~~~--~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 79 (242)
T d1mv5a_ 2 LSARHVDFAYDDS--EQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIG 79 (242)
T ss_dssp EEEEEEEECSSSS--SCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCC
T ss_pred EEEEEEEEECCCC--CCEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEECCEEECCCCHHHHHHHEE
T ss_conf 7999889987999--84142258998599999999999997999999999960989877988998844246788874367
Q ss_pred EECCCCCCCCCCHHHHHHCCC-CCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCC
Q ss_conf 880678764001899985399-9999999999999970999884185210102029999999489999999998513998
Q 001438 462 LVNQEPALFATTIRENILYGK-DDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPS 540 (1077)
Q Consensus 462 ~v~Q~~~lf~~ti~~Ni~~~~-~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~ig~~g~~lSgGqkqri~lARal~~~~~ 540 (1077)
||+|+|++|++|++||+.++. +...++++.++++.+.+.+++..+|++++|.++++|.+||||||||++||||++++|+
T Consensus 80 ~v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~LSGGqkQRv~iARal~~~p~ 159 (242)
T d1mv5a_ 80 FVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPK 159 (242)
T ss_dssp EECCSSCCCCEEHHHHTTSCTTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCS
T ss_pred EECCCCCCCCCCHHHHEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCC
T ss_conf 97566545785345430124455542356778999997555420374210152368789879999999999999852998
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHCCEEEEEECCEEEEECCHHHHHCCCCCHHHHHHHHH
Q ss_conf 99982768899989899999999987079739998259236750398999979889996294688509993689999999
Q 001438 541 ILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRNADVIAVVQGRKIVKTGSHEELISNPNSAYAALVQLQ 620 (1077)
Q Consensus 541 illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~l~~~~ 620 (1077)
|+|||||||+||+.++..+.+.+.++.+++|+|+|||+++.+..||+|++|++|+|+++|+|+||+++ ++.|+++++.|
T Consensus 160 ililDEpts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~~~D~i~vl~~G~iv~~G~~~eLl~~-~~~y~~l~~~Q 238 (242)
T d1mv5a_ 160 ILMLDEATASLDSESESMVQKALDSLMKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVAT-HPLYAKYVSEQ 238 (242)
T ss_dssp EEEEECCSCSSCSSSCCHHHHHHHHHHTTSEEEEECCSHHHHHHCSEEEEEETTEECCCSCHHHHHHH-CHHHHHHHHCC
T ss_pred EEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHCCEEEEEECCEEEEECCHHHHHHC-CHHHHHHHHHH
T ss_conf 99965886556988999998878887179989999787999984999999989999999999999868-96999999998
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=0 Score=391.76 Aligned_cols=218 Identities=27% Similarity=0.458 Sum_probs=194.9
Q ss_pred CCEEEEEEEEECCCCCCCCCCCCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHHH
Q ss_conf 41899868998599999642000038852996999983999958999999960467984179999952799997887420
Q 001438 380 GHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQ 459 (1077)
Q Consensus 380 ~~i~~~~v~f~y~~~~~~~~l~~~~~~i~~g~~~~ivG~~GsGKStl~~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~ 459 (1077)
..|.|+|++|. ..++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++| +
T Consensus 37 ~~i~~~~~~~~-----g~pvL~~isl~i~~Ge~vaivG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g-------------~ 98 (281)
T d1r0wa_ 37 NNVSFSHLCLV-----GNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSG-------------R 98 (281)
T ss_dssp ---CHHHHHHT-----TCEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEECCS-------------C
T ss_pred CCEEEEECCCC-----CCEEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECC-------------E
T ss_conf 96799976989-----97677375999859999999989998299999999579747882899999-------------9
Q ss_pred EEEECCCCCCCCCCHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCCHHHHHHHHHHHHHCCCC
Q ss_conf 46880678764001899985399999999999999997099988418521010202999999948999999999851399
Q 001438 460 IGLVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNP 539 (1077)
Q Consensus 460 i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~ig~~g~~lSgGqkqri~lARal~~~~ 539 (1077)
++|++|+||+|++||+|||.++.. ....+...+++.+...+++..+|+++++.++++|.+||||||||++||||++++|
T Consensus 99 i~~v~Q~~~l~~~tv~eni~~~~~-~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~LSgGqkQRv~lARaL~~~p 177 (281)
T d1r0wa_ 99 VSFCSQFSWIMPGTIKENIIFGVS-YDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDA 177 (281)
T ss_dssp EEEECSSCCCCSEEHHHHHTTTSC-CCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTCTTSCHHHHHHHHHHHHHHSCC
T ss_pred EEEEECCCCCCCCEEECCCCCCCC-CCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCC
T ss_conf 999816430267603214203334-5605799999997769999846123323555542377999999999999998696
Q ss_pred CEEEEECCCCCCCHHHHHHHHHH-HHHHHCCCEEEEECCCCHHHHHCCEEEEEECCEEEEECCHHHHHCCCCCHHHHHH
Q ss_conf 89998276889998989999999-9987079739998259236750398999979889996294688509993689999
Q 001438 540 SILLLDEATSALDAESENSVQEA-LDRVMVGRTTVVVAHRLSTIRNADVIAVVQGRKIVKTGSHEELISNPNSAYAALV 617 (1077)
Q Consensus 540 ~illlDe~ts~lD~~~~~~i~~~-i~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~l~ 617 (1077)
+|+|||||||+||+.++..+.+. +....+++|+|+|||+++.++.||+|++|++|+|+++|+|+||+.. ++.|...+
T Consensus 178 ~illLDEPts~LD~~~~~~i~~~~~~~~~~~~tvi~itH~~~~l~~aDrI~vl~~G~i~~~Gt~~eL~~~-~~~~~~~~ 255 (281)
T d1r0wa_ 178 DLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSKMEHLRKADKILILHQGSSYFYGTFSELQSL-RPDFSSKL 255 (281)
T ss_dssp SEEEEESCCCSSCHHHHHHHHHHCCCCCTTTSEEEEECSCHHHHHTCSEEEEEETTEEEEEECHHHHHHH-CHHHHHHH
T ss_pred CCHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHCCEEEEEECCEEEEECCHHHHHCC-CCHHHHHH
T ss_conf 3513338554489899999999999886289999999252899985999999989999998789999605-94899987
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=100.00 E-value=4.2e-45 Score=348.22 Aligned_cols=222 Identities=30% Similarity=0.473 Sum_probs=188.1
Q ss_pred CEEEEEEEEECCCCCCCCCCCCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHHHE
Q ss_conf 18998689985999996420000388529969999839999589999999604679841799999527999978874204
Q 001438 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQI 460 (1077)
Q Consensus 381 ~i~~~~v~f~y~~~~~~~~l~~~~~~i~~g~~~~ivG~~GsGKStl~~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i 460 (1077)
.|+++|++++|++ ..+|+++||++++||.++|+||||||||||++++.|+++|++|+|.++|+|+..++.. ++++
T Consensus 6 ~I~v~nlsk~yg~---~~al~~vsl~v~~Ge~~~liGpsGaGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~~~~--~r~i 80 (239)
T d1v43a3 6 EVKLENLTKRFGN---FTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPK--DRNI 80 (239)
T ss_dssp CEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGG--GGTE
T ss_pred EEEEEEEEEEECC---EEEECCEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEECCCCCCC--CCEE
T ss_conf 4999879999999---9998130678879989999999998299999999758999878799916413547700--0158
Q ss_pred EEECCCCCCCC-CCHHHHHHCCCCC--CCHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCCHHHHHHHHHHHHHCC
Q ss_conf 68806787640-0189998539999--99999999999970999884185210102029999999489999999998513
Q 001438 461 GLVNQEPALFA-TTIRENILYGKDD--ATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVK 537 (1077)
Q Consensus 461 ~~v~Q~~~lf~-~ti~~Ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~t~ig~~g~~lSgGqkqri~lARal~~ 537 (1077)
+||+|+|.+|+ -||+||+.++... .+.+++.+.. ..+ ++.+ |+..........||||||||++||||+..
T Consensus 81 g~v~Q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~--~~~---l~~~--~l~~~~~~~~~~LSGGq~QRvaiAraL~~ 153 (239)
T d1v43a3 81 SMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRV--RWA---AELL--QIEELLNRYPAQLSGGQRQRVAVARAIVV 153 (239)
T ss_dssp EEEEC------CCCHHHHHHTTCC--CCCHHHHHHHH--HHH---HHHT--TCGGGTTSCTTTCCSSCHHHHHHHHHHTT
T ss_pred EEEEECHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHH--HHH---HHHC--CCHHHHCCCHHHCCHHHHHHHHHHHHHCC
T ss_conf 9980033534222099999999987399999999999--999---9875--98556609954699999889999766404
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHH--CCCEEEEECCCCHHHHH-CCEEEEEECCEEEEECCHHHHHCCCCCHHH
Q ss_conf 998999827688999898999999999870--79739998259236750-398999979889996294688509993689
Q 001438 538 NPSILLLDEATSALDAESENSVQEALDRVM--VGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELISNPNSAYA 614 (1077)
Q Consensus 538 ~~~illlDe~ts~lD~~~~~~i~~~i~~~~--~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~ 614 (1077)
+|+|++||||||+||+.+...+.+.+.++. .++|+|+|||++..+.. ||||++|++|+|+++|+++|++.+|...|.
T Consensus 154 ~P~iLllDEPts~LD~~~~~~i~~ll~~l~~~~g~tii~vTHd~~~a~~~~dri~vm~~G~iv~~G~~~el~~~P~~~~~ 233 (239)
T d1v43a3 154 EPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLRPNSVFV 233 (239)
T ss_dssp CCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHCCSBHHH
T ss_pred CCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEECCHHHHHHCCCCHHH
T ss_conf 99824306886668989998999999999873198079994899999986999999989999998599999868999899
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Probab=100.00 E-value=2.8e-45 Score=349.26 Aligned_cols=215 Identities=32% Similarity=0.530 Sum_probs=184.3
Q ss_pred EEEEEEEEECCCCCCCCCCCCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHHHEE
Q ss_conf 89986899859999964200003885299699998399995899999996046798417999995279999788742046
Q 001438 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIG 461 (1077)
Q Consensus 382 i~~~~v~f~y~~~~~~~~l~~~~~~i~~g~~~~ivG~~GsGKStl~~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 461 (1077)
|+++|++++|++ .+|+|+||++++||.++|+||||||||||+++|.|+.+|++|+|.++|+|+.+++.. |++++
T Consensus 2 i~v~nlsk~y~~----~aL~~vs~~i~~Ge~~~liGpsGaGKSTll~~l~Gl~~p~sG~I~~~G~~i~~~~~~--~r~ig 75 (229)
T d3d31a2 2 IEIESLSRKWKN----FSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPE--KHDIA 75 (229)
T ss_dssp EEEEEEEEECSS----CEEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCHH--HHTCE
T ss_pred EEEEEEEEEECC----EEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHH--HHCCE
T ss_conf 899989999499----788433789879989999989998299999999647688878899956734652165--74056
Q ss_pred EECCCCCCCCC-CHHHHHHCCC---CCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCCHHHHHHHHHHHHHCC
Q ss_conf 88067876400-1899985399---9999999999999970999884185210102029999999489999999998513
Q 001438 462 LVNQEPALFAT-TIRENILYGK---DDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVK 537 (1077)
Q Consensus 462 ~v~Q~~~lf~~-ti~~Ni~~~~---~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~ig~~g~~lSgGqkqri~lARal~~ 537 (1077)
||+|++.+|+. ||+||+.++. .....+++.++++..++ ..........||||||||++||||++.
T Consensus 76 ~v~Q~~~l~~~~tV~enl~~~~~~~~~~~~~~~~~~l~~~~l-----------~~~~~~~~~~LSGG~~QRvaiAraL~~ 144 (229)
T d3d31a2 76 FVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKI-----------EHLLDRNPLTLSGGEQQRVALARALVT 144 (229)
T ss_dssp EECTTCCCCTTSCHHHHHHHHHHHHCCCCHHHHHHHHHHTTC-----------TTTTTSCGGGSCHHHHHHHHHHHHTTS
T ss_pred EECCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHCC-----------HHHHHCCHHHCCHHHHCCHHHHHHHHC
T ss_conf 151211117466577888887764055389999999998256-----------555758955479998401403043443
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHH--CCCEEEEECCCCHHHHH-CCEEEEEECCEEEEECCHHHHHCCCCCHH
Q ss_conf 998999827688999898999999999870--79739998259236750-39899997988999629468850999368
Q 001438 538 NPSILLLDEATSALDAESENSVQEALDRVM--VGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELISNPNSAY 613 (1077)
Q Consensus 538 ~~~illlDe~ts~lD~~~~~~i~~~i~~~~--~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~~~~~ 613 (1077)
+|+++|||||||+||+.+...+.+.+.++. .+.|+|++||+++.+.. ||||++|++|+++++|+++|+++++...+
T Consensus 145 ~P~iLllDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~vtHd~~~~~~~~drv~vm~~G~iv~~g~~~el~~~P~~~~ 223 (229)
T d3d31a2 145 NPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEIFEKPVEGR 223 (229)
T ss_dssp CCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHHHHHHHCSEEEEESSSCEEEEECHHHHHSSCCTTH
T ss_pred CCCCEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHCCEEEEEECCEEEEECCHHHHHHCCCCHH
T ss_conf 6771443478767998999999999999986479689997499999999699999997999999869999986899879
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.4e-45 Score=350.20 Aligned_cols=217 Identities=29% Similarity=0.495 Sum_probs=183.5
Q ss_pred EEEEEEEEECCCCCCCCCCCCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHHHEE
Q ss_conf 89986899859999964200003885299699998399995899999996046798417999995279999788742046
Q 001438 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIG 461 (1077)
Q Consensus 382 i~~~~v~f~y~~~~~~~~l~~~~~~i~~g~~~~ivG~~GsGKStl~~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 461 (1077)
|+++|++++|+. ..+++|+||++++||.++|+||||||||||++++.|+++|++|+|.++|+++.+.+.. ++.++
T Consensus 1 Iev~nv~k~yg~---~~~l~~isl~i~~Gei~~liGpsGsGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~~~~--~r~ig 75 (232)
T d2awna2 1 VQLQNVTKAWGE---VVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPA--ERGVG 75 (232)
T ss_dssp EEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEESSSCCTTSCGG--GTCEE
T ss_pred CEEEEEEEEECC---EEEEEEEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEECCCCCHH--HCEEE
T ss_conf 999999999899---9998111778869989999989998299999999658788888899999977888644--43222
Q ss_pred EECCCCCCCCC-CHHHHHHCCCCCCC------HHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCCHHHHHHHHHHHH
Q ss_conf 88067876400-18999853999999------999999999970999884185210102029999999489999999998
Q 001438 462 LVNQEPALFAT-TIRENILYGKDDAT------MEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRA 534 (1077)
Q Consensus 462 ~v~Q~~~lf~~-ti~~Ni~~~~~~~~------~~~~~~~~~~~~~~~~i~~l~~g~~t~ig~~g~~lSgGqkqri~lARa 534 (1077)
||+|+|.+|.. |++||+.++..... .+++.+.++..++ ++ .......+||||||||++||||
T Consensus 76 ~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~l-------~~----~~~~~~~~LSGGqkQRvaiAra 144 (232)
T d2awna2 76 MVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQL-------AH----LLDRKPKALSGGQRQRVAIGRT 144 (232)
T ss_dssp EECSSCCC---------------------CHHHHHHHHHHHHC--------------------------------CHHHH
T ss_pred EECCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCC-------HH----HHHCCHHHCCHHHHHHHHHHHH
T ss_conf 343342026433378897899987599889999999999975788-------65----6648965699999999999999
Q ss_pred HCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHH--CCCEEEEECCCCHHHHH-CCEEEEEECCEEEEECCHHHHHCCCCC
Q ss_conf 513998999827688999898999999999870--79739998259236750-398999979889996294688509993
Q 001438 535 IVKNPSILLLDEATSALDAESENSVQEALDRVM--VGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELISNPNS 611 (1077)
Q Consensus 535 l~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~--~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~~~ 611 (1077)
++.+|++++|||||++||+.+...+++.+.++. .++|+|++||++..+.. ||||++|++|+|++.|+++|++.+|..
T Consensus 145 L~~~P~illlDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~~a~~~~dri~vm~~G~iv~~G~~~el~~~P~~ 224 (232)
T d2awna2 145 LVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYPAD 224 (232)
T ss_dssp HHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCSB
T ss_pred HHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEEECHHHHHHCCCC
T ss_conf 70399889975888788988998999999999874298799994899999996999999979999998089999738999
Q ss_pred HHH
Q ss_conf 689
Q 001438 612 AYA 614 (1077)
Q Consensus 612 ~~~ 614 (1077)
.|.
T Consensus 225 ~~v 227 (232)
T d2awna2 225 RFV 227 (232)
T ss_dssp HHH
T ss_pred HHH
T ss_conf 799
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=100.00 E-value=1.4e-45 Score=349.91 Aligned_cols=226 Identities=33% Similarity=0.474 Sum_probs=187.1
Q ss_pred CEEEEEEEEECCCCCCCCCCCCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCC---HHHHH
Q ss_conf 189986899859999964200003885299699998399995899999996046798417999995279999---78874
Q 001438 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLD---LKWLR 457 (1077)
Q Consensus 381 ~i~~~~v~f~y~~~~~~~~l~~~~~~i~~g~~~~ivG~~GsGKStl~~~l~~~~~~~~G~i~~~g~~~~~~~---~~~~r 457 (1077)
.|+++|++++|+.. +..+|+|+||++++||.++|+||||||||||+++|.|+++|++|+|.++|+++...+ ....|
T Consensus 3 ~i~v~nlsk~y~~g-~~~aL~~vsl~i~~Ge~~~iiG~sGsGKSTll~~i~gl~~p~~G~I~~~g~~i~~~~~~~~~~~r 81 (242)
T d1oxxk2 3 RIIVKNVSKVFKKG-KVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPED 81 (242)
T ss_dssp CEEEEEEEEEEGGG-TEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGGG
T ss_pred EEEEEEEEEEECCC-CEEEEECEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEEEECCCHHHCCHHH
T ss_conf 89997579998899-98998040789879989999989998099999999758688874599999995137311153120
Q ss_pred HHEEEECCCCCCCCC-CHHHHHHCCCCC--CCHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCCHHHHHHHHHHHH
Q ss_conf 204688067876400-189998539999--99999999999970999884185210102029999999489999999998
Q 001438 458 QQIGLVNQEPALFAT-TIRENILYGKDD--ATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRA 534 (1077)
Q Consensus 458 ~~i~~v~Q~~~lf~~-ti~~Ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~t~ig~~g~~lSgGqkqri~lARa 534 (1077)
++++||+|+|.+|+. ||+|||.++... ...++..+.+. .+.+.+ |+..........||||||||++||||
T Consensus 82 r~ig~vfQ~~~L~p~ltv~eni~~~l~~~~~~~~~~~~~v~--~~l~~~-----gL~~~~~~~p~~LSGGqkQRvaiARa 154 (242)
T d1oxxk2 82 RKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVE--EVAKIL-----DIHHVLNHFPRELSGAQQQRVALARA 154 (242)
T ss_dssp SCEEEEETTSCCCTTSCHHHHHHGGGTTSSCCHHHHHHHHH--HHHHHT-----TCGGGTTSCGGGSCHHHHHHHHHHHH
T ss_pred CCCEEEECCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHH--HHHHHC-----CHHHHHHCCHHHCCHHHHHHHHHHHH
T ss_conf 45147730433466665777766556761379999999999--998665-----91766648954599999858998757
Q ss_pred HCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHH--CCCEEEEECCCCHHHH-HCCEEEEEECCEEEEECCHHHHHCCCCC
Q ss_conf 513998999827688999898999999999870--7973999825923675-0398999979889996294688509993
Q 001438 535 IVKNPSILLLDEATSALDAESENSVQEALDRVM--VGRTTVVVAHRLSTIR-NADVIAVVQGRKIVKTGSHEELISNPNS 611 (1077)
Q Consensus 535 l~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~--~~~t~i~itH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~~~~~ 611 (1077)
+..+|+++||||||++||+.+...+.+.++++. .+.|+|+|||+++.+. .||+|++|++|+|+++|+++|++.+|..
T Consensus 155 L~~~P~llllDEPt~~LD~~~~~~i~~~i~~l~~~~g~tvi~vTHd~~~~~~~~dri~vm~~G~iv~~g~~~el~~~P~~ 234 (242)
T d1oxxk2 155 LVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDLYDNPVS 234 (242)
T ss_dssp HTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCSS
T ss_pred HHHCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEECCHHHHHHCCCC
T ss_conf 76046614544786679989988998999999863598799997999999996999999989999998699999868999
Q ss_pred HHH
Q ss_conf 689
Q 001438 612 AYA 614 (1077)
Q Consensus 612 ~~~ 614 (1077)
.|.
T Consensus 235 ~~~ 237 (242)
T d1oxxk2 235 IQV 237 (242)
T ss_dssp HHH
T ss_pred HHH
T ss_conf 799
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.4e-45 Score=350.33 Aligned_cols=220 Identities=31% Similarity=0.544 Sum_probs=184.4
Q ss_pred EEEEEEEEECCCCCC-CCCCCCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHH---HH
Q ss_conf 899868998599999-64200003885299699998399995899999996046798417999995279999788---74
Q 001438 382 IEFKDVSFCYPSRPD-VAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKW---LR 457 (1077)
Q Consensus 382 i~~~~v~f~y~~~~~-~~~l~~~~~~i~~g~~~~ivG~~GsGKStl~~~l~~~~~~~~G~i~~~g~~~~~~~~~~---~r 457 (1077)
|+++|++++|+.+.. ..+|+|+||++++||.++|+||||||||||+++|.|+.+|++|+|.++|+++..++.+. +|
T Consensus 2 i~v~nlsk~y~~~~~~~~al~~vsl~i~~Ge~~~iiG~sGsGKSTLl~~i~Gl~~p~sG~I~~~g~~i~~~~~~~~~~~r 81 (240)
T d3dhwc1 2 IKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKAR 81 (240)
T ss_dssp EEEEEEEEEEECSSCEEEEEEEEEEEECSSCEEEEEESTTSSHHHHHHHHTTSSCCSEEEEEETTEEECTTCHHHHHHHH
T ss_pred EEEEEEEEEECCCCEEEEEEECEEEEECCCCEEEEECCCCCCHHHHHHHHCCCCCCCCCCEEECCEEEEECCHHHHHHHH
T ss_conf 79982799969998148986150578869979999899989888999987588636677328867685208755511554
Q ss_pred HHEEEECCCCCCCCC-CHHHHHHCCC--CCCC----HHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCCHHHHHHHH
Q ss_conf 204688067876400-1899985399--9999----99999999997099988418521010202999999948999999
Q 001438 458 QQIGLVNQEPALFAT-TIRENILYGK--DDAT----MEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIA 530 (1077)
Q Consensus 458 ~~i~~v~Q~~~lf~~-ti~~Ni~~~~--~~~~----~~~~~~~~~~~~~~~~i~~l~~g~~t~ig~~g~~lSgGqkqri~ 530 (1077)
++++||+|+|.+|+. ||+||+.++. .... .+++.+.++..+ +++ ........||||||||++
T Consensus 82 r~ig~VfQ~~~l~~~~tv~eni~~~l~~~~~~~~~~~~~v~~~L~~vg-------L~~----~~~~~~~~LSGG~~QRva 150 (240)
T d3dhwc1 82 RQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVG-------LGD----KHDSYPSNLSGGQKQRVA 150 (240)
T ss_dssp HHEEECCSSCCCCTTSBHHHHHHHHHHTTTCCTTHHHHHHHHHHHHHS-------TTT----TTSSCBSCCCHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCC-------CCH----HHHCCHHHCCHHHHHHHH
T ss_conf 166430225222799649999999999849998999999999999769-------903----554894349999998999
Q ss_pred HHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHH-C-CCEEEEECCCCHHHHH-CCEEEEEECCEEEEECCHHHHHC
Q ss_conf 9998513998999827688999898999999999870-7-9739998259236750-39899997988999629468850
Q 001438 531 ISRAIVKNPSILLLDEATSALDAESENSVQEALDRVM-V-GRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELIS 607 (1077)
Q Consensus 531 lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~-~-~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~ 607 (1077)
||||+..+|+++||||||++||+.+...+.+.+.++. + +.|+|+|||++..+.. ||||++|++|+|++.|+++|+++
T Consensus 151 iAraL~~~P~lLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHdl~~~~~~~dri~vl~~G~iv~~G~~~ei~~ 230 (240)
T d3dhwc1 151 IARALASNPKVLLCDEATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVFS 230 (240)
T ss_dssp HHHHHHTCCSEEEEESGGGSSCHHHHHHHHHHHHHHHHHHCCEEEEEBSCHHHHHHHCSEEEEEETTEEEEEEETTTTTC
T ss_pred HHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHCCEEEEEECCEEEEECCHHHHHH
T ss_conf 86401058986874465565898885679999999986469789998389999998699999997999999879999972
Q ss_pred CCCCH
Q ss_conf 99936
Q 001438 608 NPNSA 612 (1077)
Q Consensus 608 ~~~~~ 612 (1077)
+|...
T Consensus 231 ~P~~~ 235 (240)
T d3dhwc1 231 HPKTP 235 (240)
T ss_dssp SSCCT
T ss_pred CCCCH
T ss_conf 89985
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Probab=100.00 E-value=4.2e-45 Score=347.28 Aligned_cols=224 Identities=29% Similarity=0.476 Sum_probs=185.7
Q ss_pred CEEEEEEEEECCCCCCCCCCCCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHH----H
Q ss_conf 189986899859999964200003885299699998399995899999996046798417999995279999788----7
Q 001438 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKW----L 456 (1077)
Q Consensus 381 ~i~~~~v~f~y~~~~~~~~l~~~~~~i~~g~~~~ivG~~GsGKStl~~~l~~~~~~~~G~i~~~g~~~~~~~~~~----~ 456 (1077)
.|+++|++++|+. ..+++|+||++++||.++|+||||||||||+++|.|++.|++|+|.++|.++...+... .
T Consensus 3 ~i~v~nl~k~yg~---~~al~~vsl~i~~Ge~~~liG~sGaGKSTll~~i~gl~~p~sG~I~~~g~~i~~~~~~~~~~~~ 79 (240)
T d1g2912 3 GVRLVDVWKVFGE---VTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPK 79 (240)
T ss_dssp EEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGG
T ss_pred CEEEEEEEEEECC---EEEECCEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEEECCCCHHHHCCCC
T ss_conf 1899869999899---9998560668869989999999998099999999648788989899999980356644424532
Q ss_pred HHHEEEECCCCCCCCC-CHHHHHHCCC--CCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCCHHHHHHHHHHH
Q ss_conf 4204688067876400-1899985399--999999999999997099988418521010202999999948999999999
Q 001438 457 RQQIGLVNQEPALFAT-TIRENILYGK--DDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISR 533 (1077)
Q Consensus 457 r~~i~~v~Q~~~lf~~-ti~~Ni~~~~--~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~ig~~g~~lSgGqkqri~lAR 533 (1077)
|++++||+|+|.+|+. ||+||+.++. .....++..+.. ..+.+.+. +++- .......||||||||++|||
T Consensus 80 ~r~ig~v~Q~~~L~~~ltV~eni~~~~~~~~~~~~e~~~~v--~~~l~~~~-l~~~----~~~~p~~LSGGqkQRv~IAr 152 (240)
T d1g2912 80 DRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRV--REVAELLG-LTEL----LNRKPRELSGGQRQRVALGR 152 (240)
T ss_dssp GSSEEEECSCCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHH--HHHHHHHT-CGGG----TTCCGGGSCHHHHHHHHHHH
T ss_pred CCCCEECCCCHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHH--HHHHHHCC-CHHH----HCCCHHHCCHHHHHHHHHHH
T ss_conf 25512002212223101166763306877299989999999--99998759-9667----62993349999999999999
Q ss_pred HHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHC--CCEEEEECCCCHHHHH-CCEEEEEECCEEEEECCHHHHHCCCC
Q ss_conf 85139989998276889998989999999998707--9739998259236750-39899997988999629468850999
Q 001438 534 AIVKNPSILLLDEATSALDAESENSVQEALDRVMV--GRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELISNPN 610 (1077)
Q Consensus 534 al~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~~ 610 (1077)
|+..+|++++|||||++||+.+...+.+.+.++.+ |.|+|+|||+++.+.. ||+|++|++|+|++.|+++|++.++.
T Consensus 153 aL~~~P~iLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHd~~~~~~~~drv~vm~~G~iv~~G~~~el~~~P~ 232 (240)
T d1g2912 153 AIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEVYDKPA 232 (240)
T ss_dssp HHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCS
T ss_pred HHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHCCEEEEEECCEEEEECCHHHHHHCCC
T ss_conf 98269988982588765698999899999999986369889999599999999699999998999999859999982899
Q ss_pred CHHH
Q ss_conf 3689
Q 001438 611 SAYA 614 (1077)
Q Consensus 611 ~~~~ 614 (1077)
..|.
T Consensus 233 ~~~~ 236 (240)
T d1g2912 233 NTFV 236 (240)
T ss_dssp BHHH
T ss_pred CHHH
T ss_conf 9898
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=4.2e-45 Score=347.49 Aligned_cols=214 Identities=33% Similarity=0.498 Sum_probs=177.4
Q ss_pred EEEEEEEEECCCCCC-CCCCCCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHH----
Q ss_conf 899868998599999-642000038852996999983999958999999960467984179999952799997887----
Q 001438 382 IEFKDVSFCYPSRPD-VAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWL---- 456 (1077)
Q Consensus 382 i~~~~v~f~y~~~~~-~~~l~~~~~~i~~g~~~~ivG~~GsGKStl~~~l~~~~~~~~G~i~~~g~~~~~~~~~~~---- 456 (1077)
|+++|++++|+.... ..+|+|+||++++||.++|+||||||||||++++.|+++|++|+|.++|.++..++.+++
T Consensus 2 I~i~nlsk~y~~~~~~~~al~~isl~i~~Ge~~~iiG~sGsGKSTLl~~i~gl~~p~sG~I~~~g~~i~~~~~~~~~~~r 81 (230)
T d1l2ta_ 2 IKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIR 81 (230)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHH
T ss_pred EEEEEEEEEECCCCEEEEEEECEEEEECCCCEEEEECCCCCCCCHHHHHCCCCCCCCCCEEEECCEECCCCCHHHCCHHH
T ss_conf 89990799948998208987133778849979999889999821655750688777766269999985768855512312
Q ss_pred HHHEEEECCCCCCCCC-CHHHHHHCCC-----CCCCHHHHH-HHHHHHHHHHHHHCCCCCHHHHHCCCCCCCCHHHHHHH
Q ss_conf 4204688067876400-1899985399-----999999999-99999709998841852101020299999994899999
Q 001438 457 RQQIGLVNQEPALFAT-TIRENILYGK-----DDATMEEIT-RAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRI 529 (1077)
Q Consensus 457 r~~i~~v~Q~~~lf~~-ti~~Ni~~~~-----~~~~~~~~~-~~~~~~~~~~~i~~l~~g~~t~ig~~g~~lSgGqkqri 529 (1077)
|++++||+|+|.+++. ||+||+.++. .....++.. ++... .+. ..+++. .......+||||||||+
T Consensus 82 ~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~---l~~-~~L~~~---~~~~~p~~LSGGqkQRv 154 (230)
T d1l2ta_ 82 RDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALEC---LKM-AELEER---FANHKPNQLSGGQQQRV 154 (230)
T ss_dssp HHHEEEECTTCCCCTTSCHHHHHHHHHHTCCSSCCCHHHHHHHHHHH---HHH-TTCCGG---GTTCCGGGSCHHHHHHH
T ss_pred CCEEEEEECCHHHCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHH---HHH-HCHHHH---HHCCCHHHCCHHHHHHH
T ss_conf 55577880412417686688877578887224789999999999998---876-242345---53488023899999999
Q ss_pred HHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHH--CCCEEEEECCCCHHHHHCCEEEEEECCEEEEECCH
Q ss_conf 99998513998999827688999898999999999870--79739998259236750398999979889996294
Q 001438 530 AISRAIVKNPSILLLDEATSALDAESENSVQEALDRVM--VGRTTVVVAHRLSTIRNADVIAVVQGRKIVKTGSH 602 (1077)
Q Consensus 530 ~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~--~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~ 602 (1077)
+||||+..+|++++||||||+||+.+...+.+.+.++. .++|+|+|||+++.++.||||++|++|+|+++|+.
T Consensus 155 aIAraL~~~P~lLllDEPTs~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~~a~~~drv~~m~~G~Iv~~g~~ 229 (230)
T d1l2ta_ 155 AIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVEREEKL 229 (230)
T ss_dssp HHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEEECSCHHHHTTSSEEEEEETTEEEEEEEC
T ss_pred HHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCEEEEECCCHHHHHHCCEEEEEECCEEEEECCC
T ss_conf 987565227888994687654698999999999999998439999998788899986998999989999995257
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=4.8e-44 Score=339.87 Aligned_cols=226 Identities=29% Similarity=0.464 Sum_probs=184.2
Q ss_pred CEEEEEEEEECCCCCCCCCCCCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCC--------
Q ss_conf 189986899859999964200003885299699998399995899999996046798417999995279999--------
Q 001438 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLD-------- 452 (1077)
Q Consensus 381 ~i~~~~v~f~y~~~~~~~~l~~~~~~i~~g~~~~ivG~~GsGKStl~~~l~~~~~~~~G~i~~~g~~~~~~~-------- 452 (1077)
.|+++|++++|++ ..+|+|+||++++||.++|+||||||||||+++|.|+++|++|+|.++|.++...+
T Consensus 2 ~Lev~nl~k~yg~---~~al~~vs~~i~~GEi~~iiG~sGsGKSTLl~~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~ 78 (258)
T d1b0ua_ 2 KLHVIDLHKRYGG---HEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKV 78 (258)
T ss_dssp CEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEE
T ss_pred EEEEEEEEEEECC---EEEECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEECCEEECCCCCCCHHCCC
T ss_conf 6999978999899---9988150668869979999989998299999999747667899779999993367752000023
Q ss_pred -----HHHHHHHEEEECCCCCCCCC-CHHHHHHCCC---CCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCCH
Q ss_conf -----78874204688067876400-1899985399---99999999999999709998841852101020299999994
Q 001438 453 -----LKWLRQQIGLVNQEPALFAT-TIRENILYGK---DDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSG 523 (1077)
Q Consensus 453 -----~~~~r~~i~~v~Q~~~lf~~-ti~~Ni~~~~---~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~ig~~g~~lSg 523 (1077)
...+|++++||+|+|.+|+. |+.||+.++. ......+..+... ...+.+.-.+...+. ...+|||
T Consensus 79 ~~~~~~~~~r~~ig~vfQ~~~l~~~~tv~env~~~~~~~~~~~~~~~~~~~~--~~l~~~~l~~~~~~~----~p~~LSG 152 (258)
T d1b0ua_ 79 ADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERAL--KYLAKVGIDERAQGK----YPVHLSG 152 (258)
T ss_dssp SCHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHH--HHHHHTTCCHHHHTS----CGGGSCH
T ss_pred CCHHHHHHHHCCEEEEEECHHHCCCHHCCHHHHHHHHHHCCCCHHHHHHHHH--HHHHHCCCCHHHHCC----CCCCCCH
T ss_conf 5176799974544899833231411010213656578762999899999999--999982995244306----8220567
Q ss_pred HHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHH-CCCEEEEECCCCHHHHH-CCEEEEEECCEEEEECC
Q ss_conf 89999999998513998999827688999898999999999870-79739998259236750-39899997988999629
Q 001438 524 GQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGS 601 (1077)
Q Consensus 524 Gqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~ 601 (1077)
|||||++||||+..+|+++||||||++||+.+...+.+.++++. +|+|+|+|||++..+.. ||||++|++|+|++.|+
T Consensus 153 G~~QRv~iAraL~~~P~llilDEPT~gLD~~~~~~i~~ll~~l~~~g~til~vtHdl~~~~~~adri~vm~~G~iv~~g~ 232 (258)
T d1b0ua_ 153 GQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGD 232 (258)
T ss_dssp HHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHHHHHHHCSEEEEEETTEEEEEEC
T ss_pred HHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHCCEEEEEECCEEEEECC
T ss_conf 78889899999843998788524555688788889987655410368833899489999998699999997999999849
Q ss_pred HHHHHCCCCCHHHH
Q ss_conf 46885099936899
Q 001438 602 HEELISNPNSAYAA 615 (1077)
Q Consensus 602 ~~~l~~~~~~~~~~ 615 (1077)
++|++.++...|.+
T Consensus 233 ~~ev~~~P~~~~~~ 246 (258)
T d1b0ua_ 233 PEQVFGNPQSPRLQ 246 (258)
T ss_dssp HHHHHHSCCSHHHH
T ss_pred HHHHHHCCCCHHHH
T ss_conf 99998389999999
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Probab=100.00 E-value=1.5e-42 Score=328.77 Aligned_cols=220 Identities=27% Similarity=0.458 Sum_probs=182.9
Q ss_pred CCEEEEEEEEECCCCCCCCCCCCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHH-
Q ss_conf 4189986899859999964200003885299699998399995899999996046798417999995279999788742-
Q 001438 380 GHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQ- 458 (1077)
Q Consensus 380 ~~i~~~~v~f~y~~~~~~~~l~~~~~~i~~g~~~~ivG~~GsGKStl~~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~- 458 (1077)
-.++++|++++|++ ..+|+|+||++++||.++|+||||||||||+++|.|+++|++|+|.++|.|+...+....++
T Consensus 5 ~~Lev~~l~k~yg~---~~al~~vs~~i~~Gei~~liGpnGaGKSTl~~~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~r~ 81 (240)
T d1ji0a_ 5 IVLEVQSLHVYYGA---IHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRM 81 (240)
T ss_dssp EEEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHT
T ss_pred EEEEEEEEEEEECC---EEEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHHHHHH
T ss_conf 07999618999899---888830257888997999999999859999999967888880389842443446608888874
Q ss_pred HEEEECCCCCCCCC-CHHHHHHCCCCC-CCHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCCHHHHHHHHHHHHHC
Q ss_conf 04688067876400-189998539999-9999999999997099988418521010202999999948999999999851
Q 001438 459 QIGLVNQEPALFAT-TIRENILYGKDD-ATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIV 536 (1077)
Q Consensus 459 ~i~~v~Q~~~lf~~-ti~~Ni~~~~~~-~~~~~~~~~~~~~~~~~~i~~l~~g~~t~ig~~g~~lSgGqkqri~lARal~ 536 (1077)
.++|++|++.+|+. |++||+.++... ...+...+..... .+.. .++.........+||||||||++||||+.
T Consensus 82 gi~~~~q~~~l~~~ltv~en~~~~~~~~~~~~~~~~~~~~~--~~~~----~~l~~~~~~~~~~LSGG~~Qrv~iAraL~ 155 (240)
T d1ji0a_ 82 GIALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWI--FSLF----PRLKERLKQLGGTLSGGEQQMLAIGRALM 155 (240)
T ss_dssp TEEEECSSCCCCTTSBHHHHHHGGGTTCCCSSHHHHHHHHH--HHHC----HHHHTTTTSBSSSSCHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHH--HHHH----HCHHHHHHCCHHHCCHHHHHHHHHHHHHH
T ss_conf 23556765545776369999998887327888999999999--9874----17688875854338999999999999998
Q ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHHH-CCCEEEEECCCCHHHHH-CCEEEEEECCEEEEECCHHHHHCC
Q ss_conf 3998999827688999898999999999870-79739998259236750-398999979889996294688509
Q 001438 537 KNPSILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELISN 608 (1077)
Q Consensus 537 ~~~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 608 (1077)
.+|++++|||||++||+.+...+.+.++++. +|+|+|++||++..+.. ||||++|++|+++++|+++|+.++
T Consensus 156 ~~P~lLllDEPt~gLD~~~~~~i~~~i~~l~~~g~til~~tH~l~~~~~~~drv~vl~~G~iv~~g~~~el~~~ 229 (240)
T d1ji0a_ 156 SRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIVLEGKASELLDN 229 (240)
T ss_dssp TCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEEEHHHHHTC
T ss_pred HCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEECCHHHHHCC
T ss_conf 29987400398867999999999999999996899899995889999996999999989999998489998429
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=3.4e-42 Score=326.09 Aligned_cols=216 Identities=25% Similarity=0.423 Sum_probs=180.5
Q ss_pred CEEEEEEEEECCCCCCCCCCCCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHH-H
Q ss_conf 189986899859999964200003885299699998399995899999996046798417999995279999788742-0
Q 001438 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQ-Q 459 (1077)
Q Consensus 381 ~i~~~~v~f~y~~~~~~~~l~~~~~~i~~g~~~~ivG~~GsGKStl~~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~-~ 459 (1077)
-++++|++.+|++ ..+|+|+||++++||.++|+||||||||||+++|.|+++|++|+|.++|.|+...+..+.++ .
T Consensus 4 iL~v~nlsk~yg~---~~aL~~vs~~v~~Gei~~liG~nGaGKSTLl~~i~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~g 80 (254)
T d1g6ha_ 4 ILRTENIVKYFGE---FKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYG 80 (254)
T ss_dssp EEEEEEEEEEETT---EEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHT
T ss_pred EEEEEEEEEEECC---EEEECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCHHHHHHHHHC
T ss_conf 6999778999799---6887121799889979999999998499999999779768873799999966405699999833
Q ss_pred EEEECCCCCCCCC-CHHHHHHCCCCC----------------CCHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCC
Q ss_conf 4688067876400-189998539999----------------99999999999970999884185210102029999999
Q 001438 460 IGLVNQEPALFAT-TIRENILYGKDD----------------ATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLS 522 (1077)
Q Consensus 460 i~~v~Q~~~lf~~-ti~~Ni~~~~~~----------------~~~~~~~~~~~~~~~~~~i~~l~~g~~t~ig~~g~~lS 522 (1077)
++|++|+|.+|.. |++||+.++... ...+...++.+ +.+++. +.+-.+ ....+||
T Consensus 81 i~~v~Q~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~l~~~~-l~~~~~----~~~~~LS 152 (254)
T d1g6ha_ 81 IVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFK---ILEFLK-LSHLYD----RKAGELS 152 (254)
T ss_dssp EEECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHH---HHHHTT-CGGGTT----SBGGGSC
T ss_pred CCCCCCCCCCCCCCEEEEEEEEHHHHCCCCCHHHHHHHCCCCCHHHHHHHHHH---HHHHCC-CCHHCC----CCHHHCC
T ss_conf 87257764247887423214301333034504566542135328999999999---987619-630205----9535699
Q ss_pred HHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHH-HCCCEEEEECCCCHHHHH-CCEEEEEECCEEEEEC
Q ss_conf 48999999999851399899982768899989899999999987-079739998259236750-3989999798899962
Q 001438 523 GGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRV-MVGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTG 600 (1077)
Q Consensus 523 gGqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~-~~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g 600 (1077)
||||||++||||+..+|+++||||||++||+.+...+.+.+.++ .+|+|++++||+++.+.. ||||++|++|+|+++|
T Consensus 153 gG~~Qrv~iAraL~~~P~llilDEPt~gLD~~~~~~i~~~i~~l~~~g~til~vsHdl~~~~~~~Drv~vm~~G~iv~~g 232 (254)
T d1g6ha_ 153 GGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEG 232 (254)
T ss_dssp HHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCSTTGGGCSEEEEEETTEEEEEE
T ss_pred CHHHHHHHHHHHHHHCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEEE
T ss_conf 18888999999997592723243976569999999999999999978998999947699999869999999699899996
Q ss_pred CHHHHHC
Q ss_conf 9468850
Q 001438 601 SHEELIS 607 (1077)
Q Consensus 601 ~~~~l~~ 607 (1077)
+++|+..
T Consensus 233 ~~~e~~~ 239 (254)
T d1g6ha_ 233 RGEEEIK 239 (254)
T ss_dssp ESHHHHH
T ss_pred CHHHHHH
T ss_conf 6899865
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=2.2e-41 Score=320.00 Aligned_cols=218 Identities=26% Similarity=0.404 Sum_probs=183.0
Q ss_pred CCEEEEEEEEECCCCCCCCCCCCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHHH
Q ss_conf 41899868998599999642000038852996999983999958999999960467984179999952799997887420
Q 001438 380 GHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQ 459 (1077)
Q Consensus 380 ~~i~~~~v~f~y~~~~~~~~l~~~~~~i~~g~~~~ivG~~GsGKStl~~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~ 459 (1077)
|.|+++|++.+|+. ..+|+|+||++++||.++|+||+|||||||+++|.|+++|++|+|.++|.|+.+. ...+|+.
T Consensus 1 gaI~v~nl~k~yg~---~~vl~~vs~~v~~Gei~glvG~nGaGKSTLl~~l~G~~~p~~G~i~i~G~~i~~~-~~~~~~~ 76 (238)
T d1vpla_ 1 GAVVVKDLRKRIGK---KEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEE-PHEVRKL 76 (238)
T ss_dssp CCEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTC-HHHHHTT
T ss_pred CCEEEEEEEEEECC---EEEECCCEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCC-HHHHHHH
T ss_conf 97899958999999---9998062568848979999999999999999999669887888799986724468-3988721
Q ss_pred EEEECCCCCCCCC-CHHHHHHCCC--CCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCCHHHHHHHHHHHHHC
Q ss_conf 4688067876400-1899985399--999999999999997099988418521010202999999948999999999851
Q 001438 460 IGLVNQEPALFAT-TIRENILYGK--DDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIV 536 (1077)
Q Consensus 460 i~~v~Q~~~lf~~-ti~~Ni~~~~--~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~ig~~g~~lSgGqkqri~lARal~ 536 (1077)
++|+||++.+|.. |++||+.+.. ......++.+..... .+.+ .+ .........+||||||||++||||+.
T Consensus 77 i~~vpq~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~--l~~~-~l----~~~~~~~~~~lSgG~~qrv~iA~al~ 149 (238)
T d1vpla_ 77 ISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERA--TEIA-GL----GEKIKDRVSTYSKGMVRKLLIARALM 149 (238)
T ss_dssp EEEECTTCCCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHH--HHHH-CC----GGGGGSBGGGCCHHHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHH--HHHC-CC----HHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_conf 86750015468786677888989986179989999999999--9867-97----88885045337998989999999986
Q ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHHH-CCCEEEEECCCCHHHHH-CCEEEEEECCEEEEECCHHHHHCC
Q ss_conf 3998999827688999898999999999870-79739998259236750-398999979889996294688509
Q 001438 537 KNPSILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELISN 608 (1077)
Q Consensus 537 ~~~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 608 (1077)
.+|+|++|||||++||+.+...+.+.++++. +|+|+|++||+++.+.. ||||++|++|++++.|+++|+..+
T Consensus 150 ~~p~illLDEPt~gLD~~~~~~i~~~i~~~~~~g~tii~~tH~l~~~~~~~drv~vl~~G~iv~~g~~~el~~~ 223 (238)
T d1vpla_ 150 VNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKER 223 (238)
T ss_dssp TCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHTTTCSEEEEEETTEEEEEEEHHHHHHH
T ss_pred CCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEECCHHHHHHC
T ss_conf 59998873379889798999999999999996599899995989999996999999989999999289999865
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=100.00 E-value=2e-41 Score=320.35 Aligned_cols=221 Identities=30% Similarity=0.456 Sum_probs=179.3
Q ss_pred EEEEEEEEECCCCCCCCCCCCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHHHEE
Q ss_conf 89986899859999964200003885299699998399995899999996046798417999995279999788742046
Q 001438 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIG 461 (1077)
Q Consensus 382 i~~~~v~f~y~~~~~~~~l~~~~~~i~~g~~~~ivG~~GsGKStl~~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 461 (1077)
+++ ++..+|++ . .+ |+||+++ +|.++|+||||||||||+++|.|+++|++|+|.++|.|+..++.. |++|+
T Consensus 3 l~v-~~~k~~g~---~-~~-~vs~~~~-~e~~~liGpnGaGKSTll~~i~Gl~~p~~G~I~~~G~~i~~~~~~--~r~ig 73 (240)
T d2onka1 3 LKV-RAEKRLGN---F-RL-NVDFEMG-RDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPE--RRGIG 73 (240)
T ss_dssp EEE-EEEEEETT---E-EE-EEEEEEC-SSEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCTT--TSCCB
T ss_pred EEE-EEEEEECC---E-EE-EEEEEEC-CEEEEEECCCCCHHHHHHHHHHCCCCCCCEEEEECCEECCCCCHH--HCCCE
T ss_conf 999-99999899---9-99-9999749-979999979998099999999739998962899999998869989--92852
Q ss_pred EECCCCCCCCC-CHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCC
Q ss_conf 88067876400-18999853999999999999999970999884185210102029999999489999999998513998
Q 001438 462 LVNQEPALFAT-TIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPS 540 (1077)
Q Consensus 462 ~v~Q~~~lf~~-ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~ig~~g~~lSgGqkqri~lARal~~~~~ 540 (1077)
||+|++.+|+. ||+||+.++.......+..+.+ .+.++.+ |+..........||||||||++||||++.+|+
T Consensus 74 ~v~Q~~~l~~~ltV~enl~~~l~~~~~~~~~~~v-----~~~l~~~--gl~~~~~~~~~~LSGG~kQRvaiAral~~~P~ 146 (240)
T d2onka1 74 FVPQDYALFPHLSVYRNIAYGLRNVERVERDRRV-----REMAEKL--GIAHLLDRKPARLSGGERQRVALARALVIQPR 146 (240)
T ss_dssp CCCSSCCCCTTSCHHHHHHTTCTTSCHHHHHHHH-----HHHHHTT--TCTTTTTCCGGGSCHHHHHHHHHHHHHTTCCS
T ss_pred EECCCHHHCCCCHHHHHHHHHHCCCCHHHHHHHH-----HHHHHHC--CCHHHHHCCHHHCCHHHHHHHHHHHHHHCCCC
T ss_conf 2523144352201557666532336778899999-----9999863--83756657944489999899999877751677
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHHC--CCEEEEECCCCHHHHH-CCEEEEEECCEEEEECCHHHHHCCCCCHHHHHH
Q ss_conf 9998276889998989999999998707--9739998259236750-398999979889996294688509993689999
Q 001438 541 ILLLDEATSALDAESENSVQEALDRVMV--GRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELISNPNSAYAALV 617 (1077)
Q Consensus 541 illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~l~ 617 (1077)
+++||||||+||+.+...+.+.++++.+ +.|+|++||+++.+.. ||+|++|++|+++++|+++|+++.++...+.++
T Consensus 147 illlDEPts~LD~~~~~~i~~~i~~l~~~~g~tvi~vtHd~~~~~~~adri~vm~~G~ii~~G~~~el~~~~~~~v~~fl 226 (240)
T d2onka1 147 LLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLADEVAVMLNGRIVEKGKLKELFSAKNGEVAEFL 226 (240)
T ss_dssp SBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCCSSHHHHG
T ss_pred CEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEEECHHHHHCCCCHHHHHHH
T ss_conf 06752865558879999999999999874397699981899999996999999989999999069998329988999985
Q ss_pred H
Q ss_conf 9
Q 001438 618 Q 618 (1077)
Q Consensus 618 ~ 618 (1077)
.
T Consensus 227 ~ 227 (240)
T d2onka1 227 S 227 (240)
T ss_dssp G
T ss_pred C
T ss_conf 7
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.1e-37 Score=292.61 Aligned_cols=209 Identities=25% Similarity=0.417 Sum_probs=177.0
Q ss_pred CEEEEEEEEECCCCCCCCCCCCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHHHE
Q ss_conf 18998689985999996420000388529969999839999589999999604679841799999527999978874204
Q 001438 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQI 460 (1077)
Q Consensus 381 ~i~~~~v~f~y~~~~~~~~l~~~~~~i~~g~~~~ivG~~GsGKStl~~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i 460 (1077)
-++++||+.+| .|+++||+|++||.++|+||||||||||+++|.|+. |.+|+|.++|+++...+...++...
T Consensus 3 il~~~dv~~~~-------~l~~isl~I~~Gei~~iiG~nGaGKSTLl~~l~Gl~-~~~G~I~~~g~~i~~~~~~~~~~~~ 74 (231)
T d1l7vc_ 3 VMQLQDVAEST-------RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGKGSIQFAGQPLEAWSATKLALHR 74 (231)
T ss_dssp EEEEEEECCTT-------TSCSEEEEEETTCEEECBCCTTSSHHHHHHHHHTSC-CCSSEEEESSSBGGGSCHHHHHHHE
T ss_pred EEEEECCCCCC-------EECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCC-CCCEEEEECCEECCCCCHHHHHHHC
T ss_conf 99998741571-------555888899489899999899980999999994887-9955999999999869989998640
Q ss_pred EEECCCCC-CCCCCHHHHHHCCCCCCC-HHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCCHHHHHHHHHHHHHCC-
Q ss_conf 68806787-640018999853999999-999999999970999884185210102029999999489999999998513-
Q 001438 461 GLVNQEPA-LFATTIRENILYGKDDAT-MEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVK- 537 (1077)
Q Consensus 461 ~~v~Q~~~-lf~~ti~~Ni~~~~~~~~-~~~~~~~~~~~~~~~~i~~l~~g~~t~ig~~g~~lSgGqkqri~lARal~~- 537 (1077)
+|++|+.. .|..++.+|+.++..+.. .+.+.+.+... +.+..++....+||||||||++||||+++
T Consensus 75 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~-----------~l~~~~~~~~~~LSgG~~Qrv~iA~al~~~ 143 (231)
T d1l7vc_ 75 AYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGAL-----------ALDDKLGRSTNQLSGGEWQRVRLAAVVLQI 143 (231)
T ss_dssp EEECSCCCCCSSCBHHHHHHHHCSCTTCHHHHHHHHHHT-----------TCTTTTTSBGGGCCHHHHHHHHHHHHHHHH
T ss_pred EEEECCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHC-----------CCHHHHCCCHHHCCHHHHHHHHHHHHHHHH
T ss_conf 245121357744209887641001466899999999865-----------987676768445699889999999999851
Q ss_pred ------CCCEEEEECCCCCCCHHHHHHHHHHHHHH-HCCCEEEEECCCCHHH-HHCCEEEEEECCEEEEECCHHHHHCC
Q ss_conf ------99899982768899989899999999987-0797399982592367-50398999979889996294688509
Q 001438 538 ------NPSILLLDEATSALDAESENSVQEALDRV-MVGRTTVVVAHRLSTI-RNADVIAVVQGRKIVKTGSHEELISN 608 (1077)
Q Consensus 538 ------~~~illlDe~ts~lD~~~~~~i~~~i~~~-~~~~t~i~itH~~~~~-~~~d~i~~l~~G~i~~~g~~~~l~~~ 608 (1077)
+|++++|||||++||+.....+.+.++++ .+|+|+|++||+++.+ ..||+|++|++|++++.|+++|++++
T Consensus 144 ~p~~~p~p~llllDEPt~gLD~~~~~~i~~~i~~l~~~g~tii~vtHdl~~~~~~~dri~vl~~G~iv~~G~~~ev~~~ 222 (231)
T d1l7vc_ 144 TPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALCQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVLTP 222 (231)
T ss_dssp CTTTCTTCCEEEESSCSTTCCHHHHHHHHHHHHHHHHTTCEEEECCCCHHHHHHHCSBCCBEETTEECCCSBHHHHSCH
T ss_pred CCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEECCHHHHHCC
T ss_conf 7133899889997187777898999999999999986799999996779999997999999979989998899998188
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Probab=100.00 E-value=5.5e-35 Score=272.55 Aligned_cols=191 Identities=23% Similarity=0.424 Sum_probs=153.0
Q ss_pred CEEEEEEEEECCCCCCCCCCCCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHHHE
Q ss_conf 18998689985999996420000388529969999839999589999999604679841799999527999978874204
Q 001438 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQI 460 (1077)
Q Consensus 381 ~i~~~~v~f~y~~~~~~~~l~~~~~~i~~g~~~~ivG~~GsGKStl~~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i 460 (1077)
.|+++|++++|+ .++|+|+||++++|+.++|+||||||||||+++++|+++|++|+|.++|+++.+ .+.++
T Consensus 2 ~lev~~ls~~y~----~~vl~~is~~i~~Gei~~l~G~NGsGKSTLl~~i~gl~~p~~G~I~~~g~~i~~-----~~~~i 72 (200)
T d1sgwa_ 2 KLEIRDLSVGYD----KPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITK-----VKGKI 72 (200)
T ss_dssp EEEEEEEEEESS----SEEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGG-----GGGGE
T ss_pred EEEEEEEEEEEC----CEEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEEHHH-----HCCCE
T ss_conf 599998999939----928842088985998999999999719999999966205677889999896267-----36708
Q ss_pred EEECCCCCCCCC-CHHHHHHCCC----CCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 688067876400-1899985399----99999999999999709998841852101020299999994899999999985
Q 001438 461 GLVNQEPALFAT-TIRENILYGK----DDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAI 535 (1077)
Q Consensus 461 ~~v~Q~~~lf~~-ti~~Ni~~~~----~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~ig~~g~~lSgGqkqri~lARal 535 (1077)
+|++|++.++.. |+.||+.+.. .....+++.++.+.... + ..+..+ .+||||||||++||||+
T Consensus 73 ~~~~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~------~--~~~~~~----~~LSgG~~qrv~ia~al 140 (200)
T d1sgwa_ 73 FFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESVEV------L--DLKKKL----GELSQGTIRRVQLASTL 140 (200)
T ss_dssp EEECSSCCCCTTSBHHHHHHHHHHHTTCCCCHHHHHHHHHHTTC------C--CTTSBG----GGSCHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHCCC------C--CCCCCC----CCCCCCHHHHHHHHHHH
T ss_conf 99950135788828999999999754886379999999987488------5--630126----86897188889999988
Q ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHCCEEEEEEC
Q ss_conf 1399899982768899989899999999987079739998259236750398999979
Q 001438 536 VKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRNADVIAVVQG 593 (1077)
Q Consensus 536 ~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~~d~i~~l~~ 593 (1077)
+++|+++||||||++||+.+++.+.+.+.+..+++++++++|+- .+..||++.+|.+
T Consensus 141 ~~~~~llllDEPt~gLD~~~~~~i~~~l~~~~~~~~~~ii~~~~-~l~~~D~~~~l~~ 197 (200)
T d1sgwa_ 141 LVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSRE-ELSYCDVNENLHK 197 (200)
T ss_dssp TSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESS-CCTTSSEEEEGGG
T ss_pred HCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEEC-HHHHCCHHHHEEE
T ss_conf 64998999868620169999999999999998679999999916-2544161234010
|
| >d3b60a2 f.37.1.1 (A:10-328) Multidrug resistance ABC transporter MsbA, N-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: ABC transporter transmembrane region superfamily: ABC transporter transmembrane region family: ABC transporter transmembrane region domain: Multidrug resistance ABC transporter MsbA, N-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=99.98 E-value=8.8e-27 Score=211.59 Aligned_cols=316 Identities=16% Similarity=0.214 Sum_probs=267.4
Q ss_pred HHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 69999983324669999999999999896798999999999999710158821344589999999999999999999999
Q 001438 42 SLFKLFAFADFYDYILMSLGSIGACVHGVSVPVFFIFFGKLINIIGLAYLFPKTASHKVAKYSLDFVYLSVAILFSSWIE 121 (1077)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (1077)
.++++++|.+++++ .++++.++..+.++..+..+.+++.++|..... .....+......++++.++..++.+++
T Consensus 3 ~~krl~~~~~~~k~-~l~~~~i~~~~~~~~~~~~~~~~~~~id~~~~~-----~~~~~l~~~~~~~~~~~~~~~i~~~~~ 76 (319)
T d3b60a2 3 TFRRLWPTIAPFKA-GLIVAGIALILNAASDTFMLSLLKPLLDDGFGK-----TDRSVLLWMPLVVIGLMILRGITSYIS 76 (319)
T ss_dssp HHHHHHHHHGGGHH-HHHHHHHHHHHHHHHHHHHHHHHTHHHHSSTTS-----TTHHHHHHSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-----CCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 89999999999999-999999999999999999999999999987446-----877899999999999999764533546
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999999919901120588922899999967999999998999999999999999999999998
Q 001438 122 VSCWMYTGERQAAKMRMAYLRSMLNQDISLFDTEASTGEVISAITSDIIVVQDALSEKVGNFMHYISRFLGGFIIGFARV 201 (1077)
Q Consensus 122 ~~~~~~~~~~~~~~lr~~~~~~il~~~~~~~~~~~~~G~i~s~~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (1077)
.+++.+.+.++..++|.+++++++++|..+++++ ++|++++++++|++.+.+.+...+...+..+..+++.+++++..+
T Consensus 77 ~~~~~~~~~~~~~~l~~~~~~~ll~~~~~~~~~~-~~g~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 155 (319)
T d3b60a2 77 SYCISWVSGKVVMTMRRRLFGHMMGMPVAFFDKQ-STGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYS 155 (319)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCCSTHHHHS-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHCCCCCHHHHHHHHHCCCCHHHCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 6544343100011000477776501011110233-322111112121210000111112001123344566888887652
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999999999999999999999999999999119999996209999999999999999999999
Q 001438 202 WQISLVTLSIVPLIALAGGMYAYVTIGLIARVRKSYVKAGEIAEEVIGNVRTVQAFAGEDKAVKVYKEALSNTYKYGRKA 281 (1077)
Q Consensus 202 ~~l~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~~i~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~ 281 (1077)
|.++++.+..+|+..+......++..+..++.++..++..+.+.|.++|+++||.+++|+.+.+++++..++..+...+.
T Consensus 156 ~~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~ 235 (319)
T d3b60a2 156 WQLSIILVVLAPIVSIAIRVVSKRFRSISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKMRLQGMKM 235 (319)
T ss_dssp TTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEHHCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 00210256689999998876666877878988764456778877762487235311101024566666531356778888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 99999988999999999999999999999982464787999999999999999998579899999999999999997345
Q 001438 282 GLAKGLGLGSMHCVLFLSWSLLVWYVSVVVHKHISNGGESFTTMLNVVIAGLSLGQAAPDITAFIRAKAAAYPIFEMIER 361 (1077)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~l~~~~~~~~~a~~~~~ri~~~l~~ 361 (1077)
....+.......+...+..++++++|++.+..|.++.|.+++.+.+......|+..+...+..+.++.++.+|+++++|.
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~g~it~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~s~~Ri~elld~ 315 (319)
T d3b60a2 236 VSASSISDPIIQLIASLALAFVLYAASFPSVMDSLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDS 315 (319)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSSSTTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 87777406401000000237999999999980997899999999999999999999999999999999999999999669
Q ss_pred CCC
Q ss_conf 856
Q 001438 362 DTM 364 (1077)
Q Consensus 362 ~~~ 364 (1077)
+||
T Consensus 316 ~~E 318 (319)
T d3b60a2 316 EQE 318 (319)
T ss_dssp CCS
T ss_pred CCC
T ss_conf 989
|
| >d3b60a2 f.37.1.1 (A:10-328) Multidrug resistance ABC transporter MsbA, N-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: ABC transporter transmembrane region superfamily: ABC transporter transmembrane region family: ABC transporter transmembrane region domain: Multidrug resistance ABC transporter MsbA, N-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=99.98 E-value=3.2e-27 Score=214.89 Aligned_cols=315 Identities=12% Similarity=0.196 Sum_probs=280.6
Q ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99997420353578999999999986578699999999998630690256787989999999999999999999999999
Q 001438 684 AIKLYSMVRPDWTYGVCGTICAIIAGAQMPLFALGVSQALVAYYMDWDTTQREVKKITILFCCAAVITVIVHAIEHLSFG 763 (1077)
Q Consensus 684 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~~~~~~~~~ 763 (1077)
.++++++.+|+|+++..+.++.++.++..+..++.+..+++......+ .....++.+.++++.++..++.+++.+...
T Consensus 4 ~krl~~~~~~~k~~l~~~~i~~~~~~~~~~~~~~~~~~~id~~~~~~~--~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~ 81 (319)
T d3b60a2 4 FRRLWPTIAPFKAGLIVAGIALILNAASDTFMLSLLKPLLDDGFGKTD--RSVLLWMPLVVIGLMILRGITSYISSYCIS 81 (319)
T ss_dssp HHHHHHHHGGGHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHSSTTSTT--HHHHHHSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999999999999999999999999999999999999998744687--789999999999999976453354665443
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999981986642445677113788875209999999775699999999999999999998867999
Q 001438 764 IMGERLTLRVREKMFSAILSNEIGWFDEMDNSSSILASRLESDATLLRTIVVDRSTILIQNFGLVTASFVIAFILNWRIT 843 (1077)
Q Consensus 764 ~~~~~~~~~Lr~~lf~~ll~~p~~FFD~~~~~~G~IlnR~s~D~~~i~~~l~~~l~~~l~~~~~~i~~i~i~~~~~w~l~ 843 (1077)
..+.+...++|.+++++++++|++|||+ +++|++++|+++|++.+...+.......+.....+++.++.++..+|+++
T Consensus 82 ~~~~~~~~~l~~~~~~~ll~~~~~~~~~--~~~g~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~ 159 (319)
T d3b60a2 82 WVSGKVVMTMRRRLFGHMMGMPVAFFDK--QSTGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQLS 159 (319)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCSTHHHH--SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTH
T ss_pred HHHHCCCCCHHHHHHHHHCCCCHHHCCC--CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCH
T ss_conf 4310001100047777650101111023--33221111121212100001111120011233445668888876520021
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99998998999999999999975511488999999699999970038898722508999999998543337878999999
Q 001438 844 LVVVATYPLIISGHISEKLFFQGYGGNLSKAYLKANMLAAEAVSNIRTVAAFCSEDKVLELYSRELVEPSKRSFIRGQIA 923 (1077)
Q Consensus 844 l~~l~~~Pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Etl~Gi~TIra~~~e~~~~~~~~~~l~~~~~~~~~~~~~~ 923 (1077)
+++++.+|+.........++..+..++..+...+......|.+.|+++||+++.|+.+.+++.+..++..+...+.....
T Consensus 160 li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (319)
T d3b60a2 160 IILVVLAPIVSIAIRVVSKRFRSISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKMRLQGMKMVSAS 239 (319)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 02566899999988766668778789887644567788777624872353111010245666665313567788888777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 9999999999999999999997998631777988999999999999999999895434599999999999998737887
Q 001438 924 GIFYGISQFFIFSSYGLALWYGSVLMGKELASFKSVMKSFMVLIVTALAMGETLALVPDLLKGNQMAASVFEVLDRKTQ 1002 (1077)
Q Consensus 924 ~~~~~~~~~~~~~~~~l~~~~g~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~ll~~~~~ 1002 (1077)
+...+..........++++++|+.++..|..++|+++.++.+......|+.........++++..+.+|+++++|+++|
T Consensus 240 ~~~~~~~~~~~~~~~~~~l~~g~~~~~~g~it~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~s~~Ri~elld~~~E 318 (319)
T d3b60a2 240 SISDPIIQLIASLALAFVLYAASFPSVMDSLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDSEQE 318 (319)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSSSTTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCS
T ss_pred HHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 7406401000000237999999999980997899999999999999999999999999999999999999999669989
|
| >d2hyda2 f.37.1.1 (A:1-323) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: ABC transporter transmembrane region superfamily: ABC transporter transmembrane region family: ABC transporter transmembrane region domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=99.97 E-value=9.7e-27 Score=211.30 Aligned_cols=320 Identities=13% Similarity=0.101 Sum_probs=260.1
Q ss_pred HHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCH-H-HHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999983324669999999999999896798999999999999710158821-3-4458999999999999999999999
Q 001438 43 LFKLFAFADFYDYILMSLGSIGACVHGVSVPVFFIFFGKLINIIGLAYLFPK-T-ASHKVAKYSLDFVYLSVAILFSSWI 120 (1077)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~i~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (1077)
++|+++|.+++++ .++...++.++.+......+++++.++|.......... . ........+..+.++.+...++.++
T Consensus 2 lKrl~~~~k~~k~-~~~~~~~~~~~~~~~~~~~p~l~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 80 (323)
T d2hyda2 2 IKRYLQFVKPYKY-RIFATIIVGIIKFGIPMLIPLLIKYAIDGVINNHALTTDEKVHHLTIAIGIALFIFVIVRPPIEFI 80 (323)
T ss_dssp HHHHHHHHGGGHH-HHHHHHHHHHTTTHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 8999999999999-999999999999999999999999999998626774215568999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999999991990112058892289999996799999999899999999999999999999999
Q 001438 121 EVSCWMYTGERQAAKMRMAYLRSMLNQDISLFDTEASTGEVISAITSDIIVVQDALSEKVGNFMHYISRFLGGFIIGFAR 200 (1077)
Q Consensus 121 ~~~~~~~~~~~~~~~lr~~~~~~il~~~~~~~~~~~~~G~i~s~~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (1077)
+.++..+.+.++..++|.+++++++++|.++|++ .++|++++++++|++.+++.+...+...+..+..++..+++++..
T Consensus 81 ~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~-~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~ 159 (323)
T d2hyda2 81 RQYLAQWTSNKILYDIRKKLYNHLQALSARFYAN-NQVGQVISRVINDVEQTKDFILTGLMNIWLDCITIIIALSIMFFL 159 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHT-SCHHHHHHHHHHHHHHTHHHHHCCCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC-CCCCCCCCCCCHHHHHHCCCHHHHHHHCCHHHHHHHHHHHHHHHH
T ss_conf 9999999998556778888766540233210001-222110001111332100111345420111466533465440000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 89999999999999999999999999999999999999999999999911999999620999999999999999999999
Q 001438 201 VWQISLVTLSIVPLIALAGGMYAYVTIGLIARVRKSYVKAGEIAEEVIGNVRTVQAFAGEDKAVKVYKEALSNTYKYGRK 280 (1077)
Q Consensus 201 ~~~l~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~~i~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~ 280 (1077)
+|.++++.++..|+..+......++..+..++.++..++..+.+.|.++|+++||++++|+.+.+++++..++..+...|
T Consensus 160 ~~~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~k 239 (323)
T d2hyda2 160 DVKLTLAALFIFPFYILTVYVFFGRLRKLTRERSQALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDKKNTNFLTRALK 239 (323)
T ss_dssp CTTTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHCCCCCCCCHHHH
T ss_conf 14688899998877777776412333202677898999999787887559702346764111002330223111101567
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 99999998899999999999999999999998246478799999999999999999857989999999999999999734
Q 001438 281 AGLAKGLGLGSMHCVLFLSWSLLVWYVSVVVHKHISNGGESFTTMLNVVIAGLSLGQAAPDITAFIRAKAAAYPIFEMIE 360 (1077)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~l~~~~~~~~~a~~~~~ri~~~l~ 360 (1077)
.....+...........+...+.++++.+.+..|.+++|.+++...+......|+..+...+..+.++.++.+|+++++|
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~s~g~l~~~~~~~~~l~~~l~~l~~~~~~~~~~~~s~~Ri~elLd 319 (323)
T d2hyda2 240 HTRWNAYSFAAINTVTDIGPIIVIGVGAYLAISGSITVGTLAAFVGYLELLFGPLRRLVASFTTLTQSFASMDRVFQLID 319 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 76520000111110120558999999999998499889999999999999999999999999999999999999999977
Q ss_pred CCCC
Q ss_conf 5856
Q 001438 361 RDTM 364 (1077)
Q Consensus 361 ~~~~ 364 (1077)
++|+
T Consensus 320 ~e~e 323 (323)
T d2hyda2 320 EDYD 323 (323)
T ss_dssp CCCS
T ss_pred CCCC
T ss_conf 9998
|
| >d2hyda2 f.37.1.1 (A:1-323) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: ABC transporter transmembrane region superfamily: ABC transporter transmembrane region family: ABC transporter transmembrane region domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=99.97 E-value=4e-27 Score=214.14 Aligned_cols=317 Identities=14% Similarity=0.128 Sum_probs=273.7
Q ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHH-HHHHHH----HHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999742035357899999999998657869999999999863069025-678798----99999999999999999999
Q 001438 684 AIKLYSMVRPDWTYGVCGTICAIIAGAQMPLFALGVSQALVAYYMDWDT-TQREVK----KITILFCCAAVITVIVHAIE 758 (1077)
Q Consensus 684 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~----~~~~~~~~l~~~~~i~~~~~ 758 (1077)
.+++++|.+|+|+.+..+.++.++.+......++.+..+++........ ...... .....+.++.++..++.+++
T Consensus 2 lKrl~~~~k~~k~~~~~~~~~~~~~~~~~~~~p~l~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 81 (323)
T d2hyda2 2 IKRYLQFVKPYKYRIFATIIVGIIKFGIPMLIPLLIKYAIDGVINNHALTTDEKVHHLTIAIGIALFIFVIVRPPIEFIR 81 (323)
T ss_dssp HHHHHHHHGGGHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHHHHHHTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 89999999999999999999999999999999999999999986267742155689999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999999819866424456771137888752099999997756999999999999999999988
Q 001438 759 HLSFGIMGERLTLRVREKMFSAILSNEIGWFDEMDNSSSILASRLESDATLLRTIVVDRSTILIQNFGLVTASFVIAFIL 838 (1077)
Q Consensus 759 ~~~~~~~~~~~~~~Lr~~lf~~ll~~p~~FFD~~~~~~G~IlnR~s~D~~~i~~~l~~~l~~~l~~~~~~i~~i~i~~~~ 838 (1077)
.+.....+.+...++|.+++++++++|++|||+ +++|++++|+++|++.++..+...+...+..+..+++.++++++.
T Consensus 82 ~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~--~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~ 159 (323)
T d2hyda2 82 QYLAQWTSNKILYDIRKKLYNHLQALSARFYAN--NQVGQVISRVINDVEQTKDFILTGLMNIWLDCITIIIALSIMFFL 159 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHT--SCHHHHHHHHHHHHHHTHHHHHCCCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC--CCCCCCCCCCCHHHHHHCCCHHHHHHHCCHHHHHHHHHHHHHHHH
T ss_conf 999999998556778888766540233210001--222110001111332100111345420111466533465440000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 67999999989989999999999999755114889999996999999700388987225089999999985433378789
Q 001438 839 NWRITLVVVATYPLIISGHISEKLFFQGYGGNLSKAYLKANMLAAEAVSNIRTVAAFCSEDKVLELYSRELVEPSKRSFI 918 (1077)
Q Consensus 839 ~w~l~l~~l~~~Pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Etl~Gi~TIra~~~e~~~~~~~~~~l~~~~~~~~~ 918 (1077)
+|+++++.++..|+.........++.++..+..++...+..+...|+++|+++||+|++|+.+.++|.+..++..+...+
T Consensus 160 ~~~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~k 239 (323)
T d2hyda2 160 DVKLTLAALFIFPFYILTVYVFFGRLRKLTRERSQALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDKKNTNFLTRALK 239 (323)
T ss_dssp CTTTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHCCCCCCCCHHHH
T ss_conf 14688899998877777776412333202677898999999787887559702346764111002330223111101567
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 99999999999999999999999999799863177798899999999999999999989543459999999999999873
Q 001438 919 RGQIAGIFYGISQFFIFSSYGLALWYGSVLMGKELASFKSVMKSFMVLIVTALAMGETLALVPDLLKGNQMAASVFEVLD 998 (1077)
Q Consensus 919 ~~~~~~~~~~~~~~~~~~~~~l~~~~g~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~ll~ 998 (1077)
.....+........+..+...+.+++|+.++..|..++|+++.+..+......|+.......++++++..+.+|+++++|
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~s~g~l~~~~~~~~~l~~~l~~l~~~~~~~~~~~~s~~Ri~elLd 319 (323)
T d2hyda2 240 HTRWNAYSFAAINTVTDIGPIIVIGVGAYLAISGSITVGTLAAFVGYLELLFGPLRRLVASFTTLTQSFASMDRVFQLID 319 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 76520000111110120558999999999998499889999999999999999999999999999999999999999977
Q ss_pred CCCC
Q ss_conf 7887
Q 001438 999 RKTQ 1002 (1077)
Q Consensus 999 ~~~~ 1002 (1077)
++|+
T Consensus 320 ~e~e 323 (323)
T d2hyda2 320 EDYD 323 (323)
T ss_dssp CCCS
T ss_pred CCCC
T ss_conf 9998
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.72 E-value=3.8e-18 Score=147.45 Aligned_cols=66 Identities=41% Similarity=0.851 Sum_probs=61.8
Q ss_pred CCCCCCEEEEEEEEECCCCCCCCCCCCCEEEEECCCEEEEECCCCCCHHHHHHHHHHCCCCCCCCC
Q ss_conf 664321899424464999876343456216652898899987999977989988940168999989
Q 001438 1012 TNVEGTIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKA 1077 (1077)
Q Consensus 1012 ~~~~G~I~f~nVsf~Y~~~~~~~VLk~isl~I~~GekVaIVGrTGsGKSTli~lL~Rlydp~~G~i 1077 (1077)
.+.+|.|+|+||+|+||++++.+||+|+||+|++||++|||||||||||||+.+|.++|+|++|+|
T Consensus 6 ~~~~g~I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~li~gl~~p~~G~I 71 (251)
T d1jj7a_ 6 LHLEGLVQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTGGQL 71 (251)
T ss_dssp SCCCCCEEEEEEEECCTTSTTCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEE
T ss_pred CCCCCEEEEEEEEEECCCCCCCEEEECEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEE
T ss_conf 665336999998998899999976744389984998999999999849999999861437876899
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=99.67 E-value=4.4e-17 Score=139.57 Aligned_cols=65 Identities=54% Similarity=0.899 Sum_probs=59.6
Q ss_pred CCCCCCEEEEEEEEECCCCCCCCCCCCCEEEEECCCEEEEECCCCCCHHHHHHHHHHCCCCCCCCC
Q ss_conf 664321899424464999876343456216652898899987999977989988940168999989
Q 001438 1012 TNVEGTIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKA 1077 (1077)
Q Consensus 1012 ~~~~G~I~f~nVsf~Y~~~~~~~VLk~isl~I~~GekVaIVGrTGsGKSTli~lL~Rlydp~~G~i 1077 (1077)
+..+|+|+|+||+|+|+++ ..++|+|+||+|++||++|||||||||||||+.+|.++|+|++|+|
T Consensus 8 ~~~~g~I~~~nvsf~Y~~~-~~~~L~~isl~i~~Ge~iaivG~sGsGKSTLl~ll~gl~~p~~G~I 72 (253)
T d3b60a1 8 DRATGDLEFRNVTFTYPGR-EVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHI 72 (253)
T ss_dssp SCCCCCEEEEEEEECSSSS-SCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEE
T ss_pred CCCCEEEEEEEEEEEECCC-CCCEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEE
T ss_conf 7783079999889992999-9763533289985999999999999859999999862168884689
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=99.66 E-value=3.8e-17 Score=140.07 Aligned_cols=66 Identities=44% Similarity=0.770 Sum_probs=59.9
Q ss_pred CCCCCCCEEEEEEEEECCCCCCCCCCCCCEEEEECCCEEEEECCCCCCHHHHHHHHHHCCCCCCCCC
Q ss_conf 5664321899424464999876343456216652898899987999977989988940168999989
Q 001438 1011 LTNVEGTIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKA 1077 (1077)
Q Consensus 1011 ~~~~~G~I~f~nVsf~Y~~~~~~~VLk~isl~I~~GekVaIVGrTGsGKSTli~lL~Rlydp~~G~i 1077 (1077)
....+|+|+|+||+|+||++ ..+||+||||+|++||++|||||||||||||+.+|.++|+|++|+|
T Consensus 10 l~~~~g~I~~~nvsf~Y~~~-~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I 75 (255)
T d2hyda1 10 IEIKQGRIDIDHVSFQYNDN-EAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQI 75 (255)
T ss_dssp CCCCSCCEEEEEEEECSCSS-SCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEE
T ss_pred CCCCCCEEEEEEEEEEECCC-CCCCEECEEEEECCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCCC
T ss_conf 77778879999889995999-9760644389983998999988999809999999971278630001
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Probab=99.65 E-value=6.4e-17 Score=138.37 Aligned_cols=60 Identities=42% Similarity=0.786 Sum_probs=55.9
Q ss_pred CEEEEEEEEECCCCCCCCCCCCCEEEEECCCEEEEECCCCCCHHHHHHHHHHCCCCCCCCC
Q ss_conf 1899424464999876343456216652898899987999977989988940168999989
Q 001438 1017 TIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKA 1077 (1077)
Q Consensus 1017 ~I~f~nVsf~Y~~~~~~~VLk~isl~I~~GekVaIVGrTGsGKSTli~lL~Rlydp~~G~i 1077 (1077)
+|+|+||+|+|++. ..+||+||||+|++||++|||||||||||||+.+|.++|+|++|+|
T Consensus 1 eI~~~nvsf~Y~~~-~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLl~ll~gl~~p~~G~I 60 (241)
T d2pmka1 1 DITFRNIRFRYKPD-SPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQV 60 (241)
T ss_dssp EEEEEEEEEESSTT-SCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEE
T ss_pred CEEEEEEEEEECCC-CCCEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCEE
T ss_conf 92999999990899-9603742489984999999999999989999999973578888899
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Probab=99.48 E-value=1.3e-15 Score=128.73 Aligned_cols=159 Identities=11% Similarity=0.046 Sum_probs=107.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHHHEEEECCCCCCCCCCHHHHHHCCCCCCCHHHHH
Q ss_conf 99998399995899999996046798417999995279999788742046880678764001899985399999999999
Q 001438 412 IVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIGLVNQEPALFATTIRENILYGKDDATMEEIT 491 (1077)
Q Consensus 412 ~~~ivG~~GsGKStl~~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~~~ 491 (1077)
+++|+||+|||||||++.++|++++..|.+..++.+....+...........++.+.++..+..++...+..
T Consensus 2 ki~I~G~~G~GKSTLl~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------- 73 (178)
T d1ye8a1 2 KIIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTGFRIITTEGKKKIFSSKFFTSKKLVGSY-------- 73 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGGGEEEEEEEEEC------CCEEEEEETTCCEEEEEETTCCCSSEETTE--------
T ss_pred EEEEECCCCCHHHHHHHHHHHCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------
T ss_conf 899998999389999999981488886469987713288887653112336677788754113455443023--------
Q ss_pred HHHHHHHHHHHHHCCCCCHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHH--CC
Q ss_conf 9999970999884185210102029999999489999999998513998999827688999898999999999870--79
Q 001438 492 RAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVM--VG 569 (1077)
Q Consensus 492 ~~~~~~~~~~~i~~l~~g~~t~ig~~g~~lSgGqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~--~~ 569 (1077)
+.+.. ...+++|+++|.+++++..++|+++++|||....+. ...+.+.+.+.. .+
T Consensus 74 -----------------~~~~~----~~~~~~~~~~~~~l~~~~~~~~~vlllDE~~~~~~~--~~~~~~~l~~~l~~~~ 130 (178)
T d1ye8a1 74 -----------------GVNVQ----YFEELAIPILERAYREAKKDRRKVIIIDEIGKMELF--SKKFRDLVRQIMHDPN 130 (178)
T ss_dssp -----------------EECHH----HHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGG--CHHHHHHHHHHHTCTT
T ss_pred -----------------HCCCC----HHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCHH--HHHHHHHHHHHHCCCC
T ss_conf -----------------03762----566532013789999997409974230277731004--5799999998750579
Q ss_pred CEEEEECCCCHHHHHCCEEEEEECCEEEEECC
Q ss_conf 73999825923675039899997988999629
Q 001438 570 RTTVVVAHRLSTIRNADVIAVVQGRKIVKTGS 601 (1077)
Q Consensus 570 ~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~ 601 (1077)
+++|+++|+......+|++..+++|++++-+.
T Consensus 131 ~~il~~~h~~~~~~~~~~i~~~~~~~i~~v~~ 162 (178)
T d1ye8a1 131 VNVVATIPIRDVHPLVKEIRRLPGAVLIELTP 162 (178)
T ss_dssp SEEEEECCSSCCSHHHHHHHTCTTCEEEECCT
T ss_pred CEEEEEECCHHHHHHHCEEEEEECCEEEEECC
T ss_conf 78999974477898636599871999999899
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.33 E-value=2.9e-13 Score=111.21 Aligned_cols=60 Identities=35% Similarity=0.593 Sum_probs=54.6
Q ss_pred EEEEEEEEECCCCC-CCCCCCCCEEEEECCCEEEEECCCCCCHHHHHHHHHHCCCCCCCCC
Q ss_conf 89942446499987-6343456216652898899987999977989988940168999989
Q 001438 1018 IELRGVHFSYPSRP-EVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKA 1077 (1077)
Q Consensus 1018 I~f~nVsf~Y~~~~-~~~VLk~isl~I~~GekVaIVGrTGsGKSTli~lL~Rlydp~~G~i 1077 (1077)
|+++||+++|+.+. ...+|+|+||+|++||.+||+||||||||||+.++.++++|++|+|
T Consensus 2 I~i~nlsk~y~~~~~~~~al~~isl~i~~Ge~~~iiG~sGsGKSTLl~~i~gl~~p~sG~I 62 (230)
T d1l2ta_ 2 IKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEV 62 (230)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEE
T ss_pred EEEEEEEEEECCCCEEEEEEECEEEEECCCCEEEEECCCCCCCCHHHHHCCCCCCCCCCEE
T ss_conf 8999079994899820898713377884997999988999982165575068877776626
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=99.29 E-value=1.1e-12 Score=107.02 Aligned_cols=58 Identities=28% Similarity=0.571 Sum_probs=54.3
Q ss_pred CEEEEEEEEECCCCCCCCCCCCCEEEEECCCEEEEECCCCCCHHHHHHHHHHCCCCCCCCC
Q ss_conf 1899424464999876343456216652898899987999977989988940168999989
Q 001438 1017 TIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKA 1077 (1077)
Q Consensus 1017 ~I~f~nVsf~Y~~~~~~~VLk~isl~I~~GekVaIVGrTGsGKSTli~lL~Rlydp~~G~i 1077 (1077)
.|+++|++++|++ ..+|+|+||+|++||.+||+|||||||||++.++.+++.|++|+|
T Consensus 6 ~I~v~nlsk~yg~---~~al~~vsl~v~~Ge~~~liGpsGaGKSTLl~~i~Gl~~p~sG~I 63 (239)
T d1v43a3 6 EVKLENLTKRFGN---FTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRI 63 (239)
T ss_dssp CEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEE
T ss_pred EEEEEEEEEEECC---EEEECCEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEE
T ss_conf 4999879999999---999813067887998999999999829999999975899987879
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Probab=99.29 E-value=1.1e-12 Score=106.86 Aligned_cols=58 Identities=31% Similarity=0.562 Sum_probs=54.2
Q ss_pred CEEEEEEEEECCCCCCCCCCCCCEEEEECCCEEEEECCCCCCHHHHHHHHHHCCCCCCCCC
Q ss_conf 1899424464999876343456216652898899987999977989988940168999989
Q 001438 1017 TIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKA 1077 (1077)
Q Consensus 1017 ~I~f~nVsf~Y~~~~~~~VLk~isl~I~~GekVaIVGrTGsGKSTli~lL~Rlydp~~G~i 1077 (1077)
.|+++||+.+|.+ ..+|+|+||+|++||.+||+|||||||||++.++.++++|++|+|
T Consensus 3 ~i~v~nl~k~yg~---~~al~~vsl~i~~Ge~~~liG~sGaGKSTll~~i~gl~~p~sG~I 60 (240)
T d1g2912 3 GVRLVDVWKVFGE---VTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQI 60 (240)
T ss_dssp EEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEE
T ss_pred CEEEEEEEEEECC---EEEECCEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEE
T ss_conf 1899869999899---999856066886998999999999809999999964878898989
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Probab=99.29 E-value=9.6e-13 Score=107.36 Aligned_cols=60 Identities=27% Similarity=0.484 Sum_probs=54.9
Q ss_pred EEEEEEEEECCCCCC-CCCCCCCEEEEECCCEEEEECCCCCCHHHHHHHHHHCCCCCCCCC
Q ss_conf 899424464999876-343456216652898899987999977989988940168999989
Q 001438 1018 IELRGVHFSYPSRPE-VVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKA 1077 (1077)
Q Consensus 1018 I~f~nVsf~Y~~~~~-~~VLk~isl~I~~GekVaIVGrTGsGKSTli~lL~Rlydp~~G~i 1077 (1077)
|+++||+.+|+.+.. ..||+|+||+|++||.+||+|||||||||++.++.++.+|++|+|
T Consensus 2 i~v~nlsk~y~~~~~~~~al~~vsl~i~~Ge~~~iiG~sGsGKSTLl~~i~Gl~~p~sG~I 62 (240)
T d3dhwc1 2 IKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSV 62 (240)
T ss_dssp EEEEEEEEEEECSSCEEEEEEEEEEEECSSCEEEEEESTTSSHHHHHHHHTTSSCCSEEEE
T ss_pred EEEEEEEEEECCCCEEEEEEECEEEEECCCCEEEEECCCCCCHHHHHHHHCCCCCCCCCCE
T ss_conf 7998279996999814898615057886997999989998988899998758863667732
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.28 E-value=2.1e-10 Score=89.97 Aligned_cols=73 Identities=22% Similarity=0.312 Sum_probs=60.8
Q ss_pred CCCCHHHHHHHHHHHHH----CCCCCEEEEECCCCCCCHHHHHHHHHHHHHHH-CCCEEEEECCCCHHHHHCCEEEEE
Q ss_conf 99994899999999985----13998999827688999898999999999870-797399982592367503989999
Q 001438 519 IQLSGGQKQRIAISRAI----VKNPSILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLSTIRNADVIAVV 591 (1077)
Q Consensus 519 ~~lSgGqkqri~lARal----~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~~~d~i~~l 591 (1077)
..+|||||.++++|-.+ +.++++++||||+++||+.....+.+.|.+.. ++.-+|++||++..+..||+++..
T Consensus 331 ~~lSgGEk~~~~lal~lal~~~~~~pililDE~d~~Ld~~~~~~~~~~l~~~~~~~~Q~I~iTH~~~~~~~ad~~~~V 408 (427)
T d1w1wa_ 331 EYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNTMFEKSDALVGV 408 (427)
T ss_dssp GGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCHHHHTTCSEEEEE
T ss_pred HHHCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHCCCEEEE
T ss_conf 332230479999999999954799977999688777899999999999999728998899995878999736617999
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=99.27 E-value=5.7e-13 Score=109.04 Aligned_cols=60 Identities=25% Similarity=0.531 Sum_probs=55.3
Q ss_pred CEEEEEEEEECCCCCCCCCCCCCEEEEECCCEEEEECCCCCCHHHHHHHHHHCCCCCCCCC
Q ss_conf 1899424464999876343456216652898899987999977989988940168999989
Q 001438 1017 TIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKA 1077 (1077)
Q Consensus 1017 ~I~f~nVsf~Y~~~~~~~VLk~isl~I~~GekVaIVGrTGsGKSTli~lL~Rlydp~~G~i 1077 (1077)
.|+++||+.+|+.+ +..+|+|+||+|++||.+||+|||||||||++.+|.+++.|++|+|
T Consensus 3 ~i~v~nlsk~y~~g-~~~aL~~vsl~i~~Ge~~~iiG~sGsGKSTll~~i~gl~~p~~G~I 62 (242)
T d1oxxk2 3 RIIVKNVSKVFKKG-KVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGEL 62 (242)
T ss_dssp CEEEEEEEEEEGGG-TEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEE
T ss_pred EEEEEEEEEEECCC-CEEEEECEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEE
T ss_conf 89997579998899-9899804078987998999998999809999999975868887459
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.25 E-value=3.1e-13 Score=111.00 Aligned_cols=59 Identities=27% Similarity=0.501 Sum_probs=52.4
Q ss_pred CCCCEEEEEEEEECCCCCCCCCCCCCEEEEECCCEEEEECCCCCCHHHHHHHHHHCCCCCCCCC
Q ss_conf 4321899424464999876343456216652898899987999977989988940168999989
Q 001438 1014 VEGTIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKA 1077 (1077)
Q Consensus 1014 ~~G~I~f~nVsf~Y~~~~~~~VLk~isl~I~~GekVaIVGrTGsGKSTli~lL~Rlydp~~G~i 1077 (1077)
..++|+|+|++|.| + |||+|+||+|++||++|||||+||||||++.+|.++++|++|+|
T Consensus 35 ~~~~i~~~~~~~~g--~---pvL~~isl~i~~Ge~vaivG~nGsGKSTLl~~i~Gl~~p~~G~I 93 (281)
T d1r0wa_ 35 DENNVSFSHLCLVG--N---PVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGII 93 (281)
T ss_dssp -----CHHHHHHTT--C---EEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEE
T ss_pred CCCCEEEEECCCCC--C---EEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEE
T ss_conf 78967999769899--7---67737599985999999998999829999999957974788289
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Probab=99.21 E-value=5.5e-12 Score=101.74 Aligned_cols=58 Identities=33% Similarity=0.581 Sum_probs=53.8
Q ss_pred CEEEEEEEEECCCCCCCCCCCCCEEEEECCCEEEEECCCCCCHHHHHHHHHHCCCCCCCCC
Q ss_conf 1899424464999876343456216652898899987999977989988940168999989
Q 001438 1017 TIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKA 1077 (1077)
Q Consensus 1017 ~I~f~nVsf~Y~~~~~~~VLk~isl~I~~GekVaIVGrTGsGKSTli~lL~Rlydp~~G~i 1077 (1077)
-|+.+|++++|.+ ..||+|+||+|++||.+||+||+||||||++.+|..++.|++|+|
T Consensus 6 ~Lev~~l~k~yg~---~~al~~vs~~i~~Gei~~liGpnGaGKSTl~~~i~Gl~~p~~G~I 63 (240)
T d1ji0a_ 6 VLEVQSLHVYYGA---IHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKI 63 (240)
T ss_dssp EEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEE
T ss_pred EEEEEEEEEEECC---EEEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEE
T ss_conf 7999618999899---888830257888997999999999859999999967888880389
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.19 E-value=6.7e-12 Score=101.11 Aligned_cols=58 Identities=21% Similarity=0.438 Sum_probs=53.7
Q ss_pred CEEEEEEEEECCCCCCCCCCCCCEEEEECCCEEEEECCCCCCHHHHHHHHHHCCCCCCCCC
Q ss_conf 1899424464999876343456216652898899987999977989988940168999989
Q 001438 1017 TIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKA 1077 (1077)
Q Consensus 1017 ~I~f~nVsf~Y~~~~~~~VLk~isl~I~~GekVaIVGrTGsGKSTli~lL~Rlydp~~G~i 1077 (1077)
-|+.+|++.+|.+ ..||+||||+|++||.+||+||+||||||++.+|..++.|++|+|
T Consensus 4 iL~v~nlsk~yg~---~~aL~~vs~~v~~Gei~~liG~nGaGKSTLl~~i~Gl~~p~~G~I 61 (254)
T d1g6ha_ 4 ILRTENIVKYFGE---FKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRV 61 (254)
T ss_dssp EEEEEEEEEEETT---EEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEE
T ss_pred EEEEEEEEEEECC---EEEECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEE
T ss_conf 6999778999799---688712179988997999999999849999999977976887379
|
| >d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Thermotoga maritima [TaxId: 2336]
Probab=99.10 E-value=2.9e-09 Score=81.50 Aligned_cols=75 Identities=23% Similarity=0.337 Sum_probs=65.1
Q ss_pred CCCHHHHHHHHHHHHH----CCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHCCEEEE--EEC
Q ss_conf 9994899999999985----1399899982768899989899999999987079739998259236750398999--979
Q 001438 520 QLSGGQKQRIAISRAI----VKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRNADVIAV--VQG 593 (1077)
Q Consensus 520 ~lSgGqkqri~lARal----~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~~d~i~~--l~~ 593 (1077)
.+|+|||+...++..+ ..+++++++|||-++|++.....+.+.+....++.-+|++||++..+..+|+++. +++
T Consensus 219 ~~~~g~~~l~~~~~~~~~~~~~~~~~~~iDEpe~~Lhp~~~~~l~~~l~~~~~~~QviitTHsp~~~~~~d~~~~v~~~~ 298 (308)
T d1e69a_ 219 LLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSKHTQFIVITHNKIVMEAADLLHGVTMVN 298 (308)
T ss_dssp GSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHTTTSEEEEECCCTTGGGGCSEEEEEEESS
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHCCCEEEEEEEC
T ss_conf 02577766777776655654226744554320335797899999999998554887999989889997324289999969
Q ss_pred C
Q ss_conf 8
Q 001438 594 R 594 (1077)
Q Consensus 594 G 594 (1077)
|
T Consensus 299 g 299 (308)
T d1e69a_ 299 G 299 (308)
T ss_dssp S
T ss_pred C
T ss_conf 9
|
| >d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Gene 4 protein (g4p, DNA primase), helicase domain species: Bacteriophage T7 [TaxId: 10760]
Probab=97.12 E-value=0.0064 Score=34.38 Aligned_cols=35 Identities=26% Similarity=0.354 Sum_probs=27.2
Q ss_pred CCCCEEEEECCCCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 20000388529969999839999589999999604
Q 001438 399 IFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERF 433 (1077)
Q Consensus 399 ~l~~~~~~i~~g~~~~ivG~~GsGKStl~~~l~~~ 433 (1077)
-|+...--+.+|+++.|.|++|+||||++.-+..-
T Consensus 24 ~lD~~~~G~~~G~l~vi~G~~G~GKT~~~~~la~~ 58 (277)
T d1cr2a_ 24 GINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQ 58 (277)
T ss_dssp THHHHHCSBCTTCEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHHHH
T ss_conf 68887469789808999947999799999999972
|
| >d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Polynucleotide kinase, kinase domain species: Bacteriophage T4 [TaxId: 10665]
Probab=96.60 E-value=0.011 Score=32.76 Aligned_cols=32 Identities=31% Similarity=0.306 Sum_probs=23.7
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECC
Q ss_conf 69999839999589999999604679841799999
Q 001438 411 KIVALVGGSGSGKSTVISLIERFYEPLSGEILLDG 445 (1077)
Q Consensus 411 ~~~~ivG~~GsGKStl~~~l~~~~~~~~G~i~~~g 445 (1077)
+.+.++|++||||||+++.|.... .|...++.
T Consensus 3 klIii~G~pGsGKTTla~~L~~~~---~~~~~~~~ 34 (152)
T d1ly1a_ 3 KIILTIGCPGSGKSTWAREFIAKN---PGFYNINR 34 (152)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHS---TTEEEECH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHC---CCCEEECH
T ss_conf 799998999999999999999957---99799603
|
| >d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=96.59 E-value=0.0091 Score=33.28 Aligned_cols=30 Identities=20% Similarity=0.275 Sum_probs=25.3
Q ss_pred EECCCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 852996999983999958999999960467
Q 001438 406 DIPAGKIVALVGGSGSGKSTVISLIERFYE 435 (1077)
Q Consensus 406 ~i~~g~~~~ivG~~GsGKStl~~~l~~~~~ 435 (1077)
-+++|+.+.|.|++|||||+++.-+.....
T Consensus 22 Gi~~gsl~li~G~pGsGKT~l~~qia~~~~ 51 (242)
T d1tf7a2 22 GFFKDSIILATGATGTGKTLLVSRFVENAC 51 (242)
T ss_dssp SEESSCEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred CCCCCEEEEEEECCCCCHHHHHHHHHHHHH
T ss_conf 986984999991899999999999999998
|
| >d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Escherichia coli [TaxId: 562]
Probab=96.44 E-value=0.022 Score=30.39 Aligned_cols=38 Identities=24% Similarity=0.202 Sum_probs=27.8
Q ss_pred EECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECC
Q ss_conf 8529969999839999589999999604679841799999
Q 001438 406 DIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDG 445 (1077)
Q Consensus 406 ~i~~g~~~~ivG~~GsGKStl~~~l~~~~~~~~G~i~~~g 445 (1077)
.+++...+-+.||+|||||++++.+..++... -+.++.
T Consensus 41 g~~~~~~iLL~GppGtGKT~la~~iA~~~~~~--~~~i~~ 78 (256)
T d1lv7a_ 41 GGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVP--FFTISG 78 (256)
T ss_dssp --CCCCEEEEECCTTSCHHHHHHHHHHHHTCC--EEEECS
T ss_pred CCCCCCEEEEECCCCCCCCHHHHHHHHHCCCC--EEEEEH
T ss_conf 99988867866899888228999999982998--799886
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=96.39 E-value=0.0016 Score=38.92 Aligned_cols=34 Identities=32% Similarity=0.425 Sum_probs=29.7
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEE
Q ss_conf 9969999839999589999999604679841799
Q 001438 409 AGKIVALVGGSGSGKSTVISLIERFYEPLSGEIL 442 (1077)
Q Consensus 409 ~g~~~~ivG~~GsGKStl~~~l~~~~~~~~G~i~ 442 (1077)
+|++.+++|+||.|||||++.|.+......|.|.
T Consensus 94 ~~kt~~~~G~SGVGKSTLiN~L~~~~~~~T~~vs 127 (225)
T d1u0la2 94 KGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVS 127 (225)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHSTTCCCC-----
T ss_pred CCCEEEEECCCCCCHHHHHHHHCCHHHHHCCCCC
T ss_conf 6980899788987788887730535550106842
|
| >d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric traffic ATPase, HP0525 species: Helicobacter pylori [TaxId: 210]
Probab=96.31 E-value=0.0043 Score=35.69 Aligned_cols=37 Identities=41% Similarity=0.533 Sum_probs=30.4
Q ss_pred ECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEE
Q ss_conf 5299699998399995899999996046798417999
Q 001438 407 IPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILL 443 (1077)
Q Consensus 407 i~~g~~~~ivG~~GsGKStl~~~l~~~~~~~~G~i~~ 443 (1077)
++.+..+.|+|++||||||++++|++++++..=-|++
T Consensus 163 v~~~~nili~G~tgSGKTT~l~al~~~i~~~~rivti 199 (323)
T d1g6oa_ 163 IAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISI 199 (323)
T ss_dssp HHHTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEE
T ss_pred HHHCCCEEEEEECCCCCHHHHHHHHHHCCCCCCEEEC
T ss_conf 9837888999403566257899986530145623311
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=96.27 E-value=0.0018 Score=38.43 Aligned_cols=11 Identities=9% Similarity=0.353 Sum_probs=4.9
Q ss_pred HCCCEEEEECC
Q ss_conf 07973999825
Q 001438 567 MVGRTTVVVAH 577 (1077)
Q Consensus 567 ~~~~t~i~itH 577 (1077)
++++|++++-+
T Consensus 93 l~~kt~~~~G~ 103 (225)
T d1u0la2 93 LKGKISTMAGL 103 (225)
T ss_dssp HSSSEEEEECS
T ss_pred HCCCEEEEECC
T ss_conf 56980899788
|
| >d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric traffic ATPase, HP0525 species: Helicobacter pylori [TaxId: 210]
Probab=96.21 E-value=0.0012 Score=39.93 Aligned_cols=17 Identities=18% Similarity=0.319 Sum_probs=9.5
Q ss_pred EEEEECCCCEEEEECCC
Q ss_conf 03885299699998399
Q 001438 403 FCLDIPAGKIVALVGGS 419 (1077)
Q Consensus 403 ~~~~i~~g~~~~ivG~~ 419 (1077)
++..++.|..+.++.|.
T Consensus 99 l~a~Lp~G~Rv~~v~~p 115 (323)
T d1g6oa_ 99 LSSNLANGERVQIVLSP 115 (323)
T ss_dssp EEEECTTSCEEEEECTT
T ss_pred EEEEECCCEEEEEECCC
T ss_conf 66772685389982467
|
| >d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=96.20 E-value=0.029 Score=29.49 Aligned_cols=48 Identities=17% Similarity=0.187 Sum_probs=34.2
Q ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHH-HH-CCCEEEEECCCCHHHHH
Q ss_conf 39989998276889998989999999998-70-79739998259236750
Q 001438 537 KNPSILLLDEATSALDAESENSVQEALDR-VM-VGRTTVVVAHRLSTIRN 584 (1077)
Q Consensus 537 ~~~~illlDe~ts~lD~~~~~~i~~~i~~-~~-~~~t~i~itH~~~~~~~ 584 (1077)
.+..++|+||...+-|+.....+-.++.+ +. .+..++++||..+....
T Consensus 113 ~~~sLvliDE~~~gT~~~eg~ala~aile~L~~~~~~~i~tTH~~eL~~l 162 (224)
T d1ewqa2 113 TENSLVLLDEVGRGTSSLDGVAIATAVAEALHERRAYTLFATHYFELTAL 162 (224)
T ss_dssp CTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEECCCHHHHTC
T ss_pred CCCCEEEECCCCCCCCHHHHCCHHHHHHHHHHHCCCCEEEEEECHHHHHH
T ss_conf 97727855454568623320025888888886237613786520233322
|
| >d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric replicative helicase repA species: Escherichia coli [TaxId: 562]
Probab=96.20 E-value=0.029 Score=29.48 Aligned_cols=26 Identities=35% Similarity=0.478 Sum_probs=21.7
Q ss_pred ECCCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 52996999983999958999999960
Q 001438 407 IPAGKIVALVGGSGSGKSTVISLIER 432 (1077)
Q Consensus 407 i~~g~~~~ivG~~GsGKStl~~~l~~ 432 (1077)
+.+|+.+.|+|++|+|||||+.-+.-
T Consensus 26 ~~pg~~~~i~G~~G~GKS~l~l~la~ 51 (274)
T d1nlfa_ 26 MVAGTVGALVSPGGAGKSMLALQLAA 51 (274)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCCCEEEEEECCCCCHHHHHHHHHH
T ss_conf 55895899992899989999999999
|
| >d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.08 E-value=0.0019 Score=38.38 Aligned_cols=28 Identities=39% Similarity=0.562 Sum_probs=24.9
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCCC
Q ss_conf 9699998399995899999996046798
Q 001438 410 GKIVALVGGSGSGKSTVISLIERFYEPL 437 (1077)
Q Consensus 410 g~~~~ivG~~GsGKStl~~~l~~~~~~~ 437 (1077)
|+.+.|+|||||||||+++.|...++..
T Consensus 2 G~iivl~GpsG~GK~tl~~~L~~~~~~~ 29 (182)
T d1znwa1 2 GRVVVLSGPSAVGKSTVVRCLRERIPNL 29 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHSTTC
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHCCCC
T ss_conf 7499998999999999999998458997
|
| >d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.05 E-value=0.033 Score=29.16 Aligned_cols=30 Identities=23% Similarity=0.321 Sum_probs=25.6
Q ss_pred EECCCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 852996999983999958999999960467
Q 001438 406 DIPAGKIVALVGGSGSGKSTVISLIERFYE 435 (1077)
Q Consensus 406 ~i~~g~~~~ivG~~GsGKStl~~~l~~~~~ 435 (1077)
.+++..-+-+.||+|+|||++++.+.+.+.
T Consensus 37 g~~~~~giLL~Gp~GtGKT~l~~ala~~~~ 66 (265)
T d1r7ra3 37 GMTPSKGVLFYGPPGCGKTLLAKAIANECQ 66 (265)
T ss_dssp CCCCCCEEEEBCCTTSSHHHHHHHHHHHTT
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHHHC
T ss_conf 999887578878998763047788787718
|
| >d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-inducible GTPase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.02 E-value=0.0032 Score=36.61 Aligned_cols=29 Identities=34% Similarity=0.480 Sum_probs=23.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCE
Q ss_conf 99998399995899999996046798417
Q 001438 412 IVALVGGSGSGKSTVISLIERFYEPLSGE 440 (1077)
Q Consensus 412 ~~~ivG~~GsGKStl~~~l~~~~~~~~G~ 440 (1077)
.++|+|++|+|||||++.|.|.-.-..|.
T Consensus 58 ~Iai~G~~n~GKSSLiNaL~G~~~~~~~~ 86 (400)
T d1tq4a_ 58 NVAVTGETGSGKSSFINTLRGIGNEEEGA 86 (400)
T ss_dssp EEEEEECTTSSHHHHHHHHHTCCTTSTTS
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCC
T ss_conf 79998999997899999995888677756
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.75 E-value=3.4e-05 Score=51.26 Aligned_cols=34 Identities=24% Similarity=0.199 Sum_probs=27.5
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEC
Q ss_conf 6999983999958999999960467984179999
Q 001438 411 KIVALVGGSGSGKSTVISLIERFYEPLSGEILLD 444 (1077)
Q Consensus 411 ~~~~ivG~~GsGKStl~~~l~~~~~~~~G~i~~~ 444 (1077)
+.+.|+||+|+|||||++.+.+.+....+.+...
T Consensus 2 k~v~ItG~~GtGKTtl~~~i~~~l~~~~~~v~~~ 35 (189)
T d2i3ba1 2 RHVFLTGPPGVGKTTLIHKASEVLKSSGVPVDGF 35 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHHHHHTTCCCEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEE
T ss_conf 6999988999719999999999999779979999
|
| >d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Chloroplast protein translocon GTPase Toc34 species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=95.73 E-value=0.0031 Score=36.74 Aligned_cols=23 Identities=26% Similarity=0.381 Sum_probs=21.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998399995899999996046
Q 001438 412 IVALVGGSGSGKSTVISLIERFY 434 (1077)
Q Consensus 412 ~~~ivG~~GsGKStl~~~l~~~~ 434 (1077)
.++++|++|+||||+++.|+|.-
T Consensus 34 ~I~LvG~tg~GKSSliN~ilg~~ 56 (257)
T d1h65a_ 34 TILVMGKGGVGKSSTVNSIIGER 56 (257)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89998999986999999985898
|
| >d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Escherichia coli [TaxId: 562]
Probab=95.58 E-value=0.0051 Score=35.11 Aligned_cols=27 Identities=26% Similarity=0.416 Sum_probs=24.4
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 996999983999958999999960467
Q 001438 409 AGKIVALVGGSGSGKSTVISLIERFYE 435 (1077)
Q Consensus 409 ~g~~~~ivG~~GsGKStl~~~l~~~~~ 435 (1077)
+|..+.|+||||+||+||.+.|...++
T Consensus 1 ~G~livi~GPSG~GK~tl~~~L~~~~p 27 (205)
T d1s96a_ 1 QGTLYIVSAPSGAGKSSLIQALLKTQP 27 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 980999999999999999999986398
|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein Atu3015 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=95.55 E-value=0.0055 Score=34.90 Aligned_cols=35 Identities=29% Similarity=0.458 Sum_probs=27.1
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECC
Q ss_conf 9969999839999589999999604679841799999
Q 001438 409 AGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDG 445 (1077)
Q Consensus 409 ~g~~~~ivG~~GsGKStl~~~l~~~~~~~~G~i~~~g 445 (1077)
.|+.+.|.|++||||||+.+.|...+... .+.+++
T Consensus 3 ~g~iI~l~G~~GsGKSTia~~La~~lg~~--~~~~~~ 37 (176)
T d1zp6a1 3 GGNILLLSGHPGSGKSTIAEALANLPGVP--KVHFHS 37 (176)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTCSSSC--EEEECT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHCCC--EEEECH
T ss_conf 98599998899998899999999995999--799068
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=95.42 E-value=0.0018 Score=38.58 Aligned_cols=34 Identities=29% Similarity=0.368 Sum_probs=30.1
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEE
Q ss_conf 9969999839999589999999604679841799
Q 001438 409 AGKIVALVGGSGSGKSTVISLIERFYEPLSGEIL 442 (1077)
Q Consensus 409 ~g~~~~ivG~~GsGKStl~~~l~~~~~~~~G~i~ 442 (1077)
+|++++++|+||.|||||++.|.+......|.|.
T Consensus 96 ~~~~~vl~G~SGVGKSSLiN~L~~~~~~~t~~vs 129 (231)
T d1t9ha2 96 QDKTTVFAGQSGVGKSSLLNAISPELGLRTNEIS 129 (231)
T ss_dssp TTSEEEEEESHHHHHHHHHHHHCC----------
T ss_pred CCCEEEEECCCCCCHHHHHHHHCCHHHHHHCCCC
T ss_conf 3564999877873487898751517676403555
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Probab=95.40 E-value=0.0037 Score=36.21 Aligned_cols=26 Identities=23% Similarity=0.313 Sum_probs=22.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCC
Q ss_conf 99998399995899999996046798
Q 001438 412 IVALVGGSGSGKSTVISLIERFYEPL 437 (1077)
Q Consensus 412 ~~~ivG~~GsGKStl~~~l~~~~~~~ 437 (1077)
.++|+|++|||||||++.|.+.+...
T Consensus 4 vi~itG~~GSGKTTL~~~L~~~l~~~ 29 (170)
T d1np6a_ 4 LLAFAAWSGTGKTTLLKKLIPALCAR 29 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC
T ss_conf 89999189998999999999999977
|
| >d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=95.37 E-value=0.061 Score=27.14 Aligned_cols=45 Identities=18% Similarity=0.162 Sum_probs=30.3
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHH-HHHHH-C-CCEEEEECCCCHHH
Q ss_conf 9989998276889998989999999-99870-7-97399982592367
Q 001438 538 NPSILLLDEATSALDAESENSVQEA-LDRVM-V-GRTTVVVAHRLSTI 582 (1077)
Q Consensus 538 ~~~illlDe~ts~lD~~~~~~i~~~-i~~~~-~-~~t~i~itH~~~~~ 582 (1077)
+..++|+||...+-++.....+-.+ +..+. + +..+++.||.....
T Consensus 120 ~~sLvliDE~~~gT~~~eg~~l~~a~l~~l~~~~~~~~i~tTH~~~l~ 167 (234)
T d1wb9a2 120 EYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELT 167 (234)
T ss_dssp TTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCGGGG
T ss_pred CCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHH
T ss_conf 660885322235877456667898764543204544289852468776
|
| >d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.25 E-value=0.066 Score=26.88 Aligned_cols=27 Identities=37% Similarity=0.367 Sum_probs=22.7
Q ss_pred ECCCCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 529969999839999589999999604
Q 001438 407 IPAGKIVALVGGSGSGKSTVISLIERF 433 (1077)
Q Consensus 407 i~~g~~~~ivG~~GsGKStl~~~l~~~ 433 (1077)
-++.+++.++|++||||||+.+-+...
T Consensus 11 ~~~p~liil~G~pGsGKST~a~~l~~~ 37 (172)
T d1yj5a2 11 SPNPEVVVAVGFPGAGKSTFIQEHLVS 37 (172)
T ss_dssp CSSCCEEEEECCTTSSHHHHHHHHTGG
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 999989999899999899999999976
|
| >d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Pantothenate kinase PanK species: Escherichia coli [TaxId: 562]
Probab=95.13 E-value=0.011 Score=32.66 Aligned_cols=48 Identities=17% Similarity=0.383 Sum_probs=33.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHHHEEEECCCCCCCCCCHHH
Q ss_conf 99998399995899999996046798417999995279999788742046880678764001899
Q 001438 412 IVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIGLVNQEPALFATTIRE 476 (1077)
Q Consensus 412 ~~~ivG~~GsGKStl~~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~~ 476 (1077)
.+||.|++||||||+.+.|...+....+. .++..++++.+......++
T Consensus 82 iIGIaG~sgSGKSTla~~L~~lL~~~~~~-----------------~~v~~Is~D~F~~~~~~l~ 129 (308)
T d1sq5a_ 82 IISIAGSVAVGKSTTARVLQALLSRWPEH-----------------RRVELITTDGFLHPNQVLK 129 (308)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHTTSTTC-----------------CCEEEEEGGGGBCCHHHHH
T ss_pred EEEEECCCCCCCCHHHHHHHHHHHHHCCC-----------------CCEEEEEEEEEECCCHHHH
T ss_conf 99996899998768999999997304689-----------------9659995215689845888
|
| >d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.00 E-value=0.022 Score=30.45 Aligned_cols=44 Identities=16% Similarity=0.358 Sum_probs=31.9
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCHHH
Q ss_conf 998999827688999898999999999870797399982592367
Q 001438 538 NPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTI 582 (1077)
Q Consensus 538 ~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~ 582 (1077)
+.+++++||+-. +.......+.+.+....+....|++|++.+.+
T Consensus 131 ~~~iiiide~d~-l~~~~~~~l~~~~e~~~~~~~~Il~tn~~~~i 174 (252)
T d1sxje2 131 RYKCVIINEANS-LTKDAQAALRRTMEKYSKNIRLIMVCDSMSPI 174 (252)
T ss_dssp CCEEEEEECTTS-SCHHHHHHHHHHHHHSTTTEEEEEEESCSCSS
T ss_pred CCEEEEECCCCC-CCCCCCHHHHCCCCCCCCCCCCEEEECCCCCH
T ss_conf 724999424333-45431112210022135664300010211100
|
| >d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Probable kinase LmjF30.1890 species: Leishmania major [TaxId: 5664]
Probab=94.90 E-value=0.011 Score=32.74 Aligned_cols=28 Identities=25% Similarity=0.553 Sum_probs=24.8
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 2996999983999958999999960467
Q 001438 408 PAGKIVALVGGSGSGKSTVISLIERFYE 435 (1077)
Q Consensus 408 ~~g~~~~ivG~~GsGKStl~~~l~~~~~ 435 (1077)
|+|-.+.|.||+||||||+.+.|...+.
T Consensus 3 pk~~~I~i~G~~GsGKTT~~~~La~~l~ 30 (174)
T d1y63a_ 3 PKGINILITGTPGTGKTSMAEMIAAELD 30 (174)
T ss_dssp CSSCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHHC
T ss_conf 9988899982899988999999999858
|
| >d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=94.84 E-value=0.011 Score=32.77 Aligned_cols=28 Identities=21% Similarity=0.290 Sum_probs=24.5
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 2996999983999958999999960467
Q 001438 408 PAGKIVALVGGSGSGKSTVISLIERFYE 435 (1077)
Q Consensus 408 ~~g~~~~ivG~~GsGKStl~~~l~~~~~ 435 (1077)
++|.++.++|++||||||+.+.|..-+.
T Consensus 4 ~~g~~I~l~G~~GsGKTTia~~La~~L~ 31 (183)
T d1m8pa3 4 TQGFTIFLTGYMNSGKDAIARALQVTLN 31 (183)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 9976999889999999999999999986
|
| >d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: LAO/AO transport system kinase ArgK species: Escherichia coli [TaxId: 562]
Probab=94.70 E-value=0.0056 Score=34.83 Aligned_cols=29 Identities=21% Similarity=0.272 Sum_probs=24.2
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 29969999839999589999999604679
Q 001438 408 PAGKIVALVGGSGSGKSTVISLIERFYEP 436 (1077)
Q Consensus 408 ~~g~~~~ivG~~GsGKStl~~~l~~~~~~ 436 (1077)
.+.-.++|+|++|+|||||+..+.+.+..
T Consensus 52 ~~~~~IgitG~pGaGKSTLi~~l~~~~~~ 80 (327)
T d2p67a1 52 GNTLRLGVTGTPGAGKSTFLEAFGMLLIR 80 (327)
T ss_dssp SCSEEEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 98328974389999899999999999975
|
| >d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain species: Haemophilus influenzae [TaxId: 727]
Probab=94.67 E-value=0.0094 Score=33.17 Aligned_cols=26 Identities=35% Similarity=0.686 Sum_probs=22.8
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 96999983999958999999960467
Q 001438 410 GKIVALVGGSGSGKSTVISLIERFYE 435 (1077)
Q Consensus 410 g~~~~ivG~~GsGKStl~~~l~~~~~ 435 (1077)
-+.++|.|++|||||||++.|...+.
T Consensus 7 ~K~I~i~G~~GsGKTTla~~La~~~~ 32 (192)
T d1lw7a2 7 AKTVAILGGESSGKSVLVNKLAAVFN 32 (192)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 32899989999989999999999849
|
| >d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Bacillus stearothermophilus [TaxId: 1422]
Probab=94.66 E-value=0.0094 Score=33.18 Aligned_cols=27 Identities=22% Similarity=0.145 Sum_probs=23.2
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCC
Q ss_conf 699998399995899999996046798
Q 001438 411 KIVALVGGSGSGKSTVISLIERFYEPL 437 (1077)
Q Consensus 411 ~~~~ivG~~GsGKStl~~~l~~~~~~~ 437 (1077)
+.++|+|++|||||||+.-|.+.+...
T Consensus 2 kii~I~G~~gSGKTTli~~l~~~L~~~ 28 (165)
T d1xjca_ 2 NVWQVVGYKHSGKTTLMEKWVAAAVRE 28 (165)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred CEEEEEECCCCCHHHHHHHHHHHHHHC
T ss_conf 099998099998999999999999867
|
| >d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Gluconate kinase domain: Gluconate kinase species: Escherichia coli [TaxId: 562]
Probab=94.62 E-value=0.013 Score=32.23 Aligned_cols=27 Identities=41% Similarity=0.450 Sum_probs=24.0
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 299699998399995899999996046
Q 001438 408 PAGKIVALVGGSGSGKSTVISLIERFY 434 (1077)
Q Consensus 408 ~~g~~~~ivG~~GsGKStl~~~l~~~~ 434 (1077)
+.++.+.+.|++||||||+.+.|...+
T Consensus 4 ~~~~iivl~G~~GsGKsT~a~~La~~l 30 (171)
T d1knqa_ 4 HDHHIYVLMGVSGSGKSAVASEVAHQL 30 (171)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 987189998999989899999999986
|
| >d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Chloramphenicol phosphotransferase domain: Chloramphenicol phosphotransferase species: Streptomyces venezuelae [TaxId: 54571]
Probab=94.58 E-value=0.015 Score=31.59 Aligned_cols=27 Identities=26% Similarity=0.556 Sum_probs=23.6
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 996999983999958999999960467
Q 001438 409 AGKIVALVGGSGSGKSTVISLIERFYE 435 (1077)
Q Consensus 409 ~g~~~~ivG~~GsGKStl~~~l~~~~~ 435 (1077)
..+.+.|.|++||||||+.+.|...+.
T Consensus 2 ~~kiI~l~G~~GsGKsTva~~L~~~l~ 28 (178)
T d1qhxa_ 2 TTRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 985999989999998999999999728
|
| >d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]
Probab=94.55 E-value=0.013 Score=32.21 Aligned_cols=27 Identities=30% Similarity=0.556 Sum_probs=24.4
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 299699998399995899999996046
Q 001438 408 PAGKIVALVGGSGSGKSTVISLIERFY 434 (1077)
Q Consensus 408 ~~g~~~~ivG~~GsGKStl~~~l~~~~ 434 (1077)
|+|-.+.++||+||||||+.+.|...|
T Consensus 1 p~~~riil~G~pGSGKsT~a~~La~~~ 27 (190)
T d1ak2a1 1 PKGVRAVLLGPPGAGKGTQAPKLAKNF 27 (190)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 996389998999998899999999986
|
| >d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=94.55 E-value=0.012 Score=32.47 Aligned_cols=30 Identities=23% Similarity=0.239 Sum_probs=24.4
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCCCCC
Q ss_conf 969999839999589999999604679841
Q 001438 410 GKIVALVGGSGSGKSTVISLIERFYEPLSG 439 (1077)
Q Consensus 410 g~~~~ivG~~GsGKStl~~~l~~~~~~~~G 439 (1077)
++.++|.|++||||||+++.|...+.....
T Consensus 1 ~kiI~i~G~~GsGKsT~~~~L~~~l~~~~~ 30 (190)
T d1khta_ 1 NKVVVVTGVPGVGSTTSSQLAMDNLRKEGV 30 (190)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHTTTC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHCCC
T ss_conf 988999899998989999999999987699
|
| >d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein rbstp0775 species: Bacillus stearothermophilus [TaxId: 1422]
Probab=94.52 E-value=0.013 Score=32.11 Aligned_cols=25 Identities=24% Similarity=0.364 Sum_probs=21.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 9999839999589999999604679
Q 001438 412 IVALVGGSGSGKSTVISLIERFYEP 436 (1077)
Q Consensus 412 ~~~ivG~~GsGKStl~~~l~~~~~~ 436 (1077)
.+||.|++||||||+.+.|...+..
T Consensus 24 iIgI~G~~GSGKSTla~~L~~~l~~ 48 (198)
T d1rz3a_ 24 VLGIDGLSRSGKTTLANQLSQTLRE 48 (198)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCC
T ss_conf 9997898878999999999998363
|
| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein BH3686 species: Bacillus halodurans [TaxId: 86665]
Probab=94.49 E-value=0.013 Score=32.21 Aligned_cols=25 Identities=28% Similarity=0.430 Sum_probs=22.4
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 6999983999958999999960467
Q 001438 411 KIVALVGGSGSGKSTVISLIERFYE 435 (1077)
Q Consensus 411 ~~~~ivG~~GsGKStl~~~l~~~~~ 435 (1077)
+.+.|+||+||||||+.+.|.+.+.
T Consensus 3 klI~i~G~~GsGKTTva~~L~~~~~ 27 (176)
T d2bdta1 3 KLYIITGPAGVGKSTTCKRLAAQLD 27 (176)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred EEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 0899989999998999999999809
|
| >d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase-like domain of Cask species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.48 E-value=0.015 Score=31.62 Aligned_cols=26 Identities=19% Similarity=0.323 Sum_probs=22.3
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 96999983999958999999960467
Q 001438 410 GKIVALVGGSGSGKSTVISLIERFYE 435 (1077)
Q Consensus 410 g~~~~ivG~~GsGKStl~~~l~~~~~ 435 (1077)
.+.+.|+||||+||+||++.|....+
T Consensus 3 ~k~ivl~Gpsg~GK~tl~~~L~~~~~ 28 (178)
T d1kgda_ 3 RKTLVLLGAHGVGRRHIKNTLITKHP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 77199999899999999999997097
|
| >d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Pantothenate kinase PanK species: Escherichia coli [TaxId: 562]
Probab=94.43 E-value=0.011 Score=32.68 Aligned_cols=21 Identities=10% Similarity=0.156 Sum_probs=6.9
Q ss_pred EECCCCCCCHHHHHHHHHHHH
Q ss_conf 827688999898999999999
Q 001438 544 LDEATSALDAESENSVQEALD 564 (1077)
Q Consensus 544 lDe~ts~lD~~~~~~i~~~i~ 564 (1077)
++=+.++==....+.+.+.+.
T Consensus 85 IaG~sgSGKSTla~~L~~lL~ 105 (308)
T d1sq5a_ 85 IAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp EEECTTSSHHHHHHHHHHHHT
T ss_pred EECCCCCCCCHHHHHHHHHHH
T ss_conf 968999987689999999973
|
| >d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Dictyostelium discoideum [TaxId: 44689]
Probab=94.35 E-value=0.013 Score=32.21 Aligned_cols=26 Identities=38% Similarity=0.572 Sum_probs=23.0
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99699998399995899999996046
Q 001438 409 AGKIVALVGGSGSGKSTVISLIERFY 434 (1077)
Q Consensus 409 ~g~~~~ivG~~GsGKStl~~~l~~~~ 434 (1077)
+...+.|+||+||||||+.+.|...|
T Consensus 5 kp~iI~i~G~pGSGKsT~a~~La~~~ 30 (194)
T d1qf9a_ 5 KPNVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99489998999998899999999997
|
| >d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=94.26 E-value=0.028 Score=29.67 Aligned_cols=23 Identities=39% Similarity=0.413 Sum_probs=20.6
Q ss_pred CEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 69999839999589999999604
Q 001438 411 KIVALVGGSGSGKSTVISLIERF 433 (1077)
Q Consensus 411 ~~~~ivG~~GsGKStl~~~l~~~ 433 (1077)
=.++++|++|+|||||++.|++.
T Consensus 9 ~kV~iiG~~~~GKSTLin~l~~~ 31 (186)
T d1mkya2 9 IKVAIVGRPNVGKSTLFNAILNK 31 (186)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHHCC
T ss_conf 88999999999999999999778
|
| >d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Bacillus subtilis [TaxId: 1423]
Probab=94.17 E-value=0.016 Score=31.42 Aligned_cols=22 Identities=36% Similarity=0.421 Sum_probs=20.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999839999589999999604
Q 001438 412 IVALVGGSGSGKSTVISLIERF 433 (1077)
Q Consensus 412 ~~~ivG~~GsGKStl~~~l~~~ 433 (1077)
.++|+|++|+|||||++.|.|.
T Consensus 25 ~I~lvG~~n~GKSTLin~L~g~ 46 (195)
T d1svia_ 25 EIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHCCC
T ss_conf 9999899998799999985298
|
| >d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Uridine-cytidine kinase 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.06 E-value=0.018 Score=31.15 Aligned_cols=24 Identities=33% Similarity=0.614 Sum_probs=20.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999983999958999999960467
Q 001438 412 IVALVGGSGSGKSTVISLIERFYE 435 (1077)
Q Consensus 412 ~~~ivG~~GsGKStl~~~l~~~~~ 435 (1077)
.+||.|++||||||+.+.|...+.
T Consensus 4 iIgI~G~~gSGKSTla~~L~~~l~ 27 (213)
T d1uj2a_ 4 LIGVSGGTASGKSSVCAKIVQLLG 27 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 999989997879999999999964
|
| >d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: ATP(GTP)-binding protein PAB0955 species: Pyrococcus abyssi [TaxId: 29292]
Probab=93.99 E-value=0.025 Score=30.01 Aligned_cols=24 Identities=46% Similarity=0.757 Sum_probs=20.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999983999958999999960467
Q 001438 412 IVALVGGSGSGKSTVISLIERFYE 435 (1077)
Q Consensus 412 ~~~ivG~~GsGKStl~~~l~~~~~ 435 (1077)
.++|+|+.|||||||++.|++...
T Consensus 2 vi~v~G~~GsGKTTLl~~ll~~~~ 25 (244)
T d1yrba1 2 IVVFVGTAGSGKTTLTGEFGRYLE 25 (244)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 899991899839999999999884
|
| >d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-inducible GTPase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.91 E-value=0.028 Score=29.62 Aligned_cols=43 Identities=7% Similarity=0.179 Sum_probs=22.2
Q ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCHHH
Q ss_conf 13998999827688999898999999999870797399982592367
Q 001438 536 VKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTI 582 (1077)
Q Consensus 536 ~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~ 582 (1077)
..+.+++|+|-. .... +.+..+.+.+.+. ++-+++|-......
T Consensus 133 ~~~~d~~l~~~~-~~~~-~~d~~l~~~l~~~--~k~~~~V~nK~D~~ 175 (400)
T d1tq4a_ 133 FYEYDFFIIISA-TRFK-KNDIDIAKAISMM--KKEFYFVRTKVDSD 175 (400)
T ss_dssp GGGCSEEEEEES-SCCC-HHHHHHHHHHHHT--TCEEEEEECCHHHH
T ss_pred HHCCEEEEEECC-CCCC-HHHHHHHHHHHHC--CCCEEEEEECCCCC
T ss_conf 322659999658-8887-8899999999976--99879997086321
|
| >d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Extracellular secretion NTPase EpsE species: Vibrio cholerae [TaxId: 666]
Probab=93.85 E-value=0.021 Score=30.62 Aligned_cols=113 Identities=17% Similarity=0.228 Sum_probs=64.9
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEE-EECCEECCCCCHHHHHHHEEEECCCCCCCCCCHHHHHHCCCCCCC
Q ss_conf 2996999983999958999999960467984179-999952799997887420468806787640018999853999999
Q 001438 408 PAGKIVALVGGSGSGKSTVISLIERFYEPLSGEI-LLDGNNIKGLDLKWLRQQIGLVNQEPALFATTIRENILYGKDDAT 486 (1077)
Q Consensus 408 ~~g~~~~ivG~~GsGKStl~~~l~~~~~~~~G~i-~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~~Ni~~~~~~~~ 486 (1077)
.++-.+.+.||+||||||.+..++...+....+| ++.. |+. ..+.+ .
T Consensus 156 ~~~GliLvtGpTGSGKSTTl~~~l~~~~~~~~~i~tiEd-PiE------------------~~~~~------------~- 203 (401)
T d1p9ra_ 156 RPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVED-PIE------------------FDIDG------------I- 203 (401)
T ss_dssp SSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEES-SCC------------------SCCSS------------S-
T ss_pred HHHCEEEEECCCCCCCCHHHHHHHHHHCCCCCEEEEECC-CCC------------------CCCCC------------C-
T ss_conf 410548987678777447799986662578746999626-743------------------45678------------8-
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCHHHHHC-CCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHH
Q ss_conf 99999999997099988418521010202-99999994899999999985139989998276889998989999999998
Q 001438 487 MEEITRAAKLSEAMSFISNLPERFETQVG-ERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDR 565 (1077)
Q Consensus 487 ~~~~~~~~~~~~~~~~i~~l~~g~~t~ig-~~g~~lSgGqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~ 565 (1077)
.++.+. +.+.+ ---++..++-+|||+++..|.. |.++.... +..
T Consensus 204 -----------------------~q~~v~~~~~~~------~~~~l~~~lR~dPDvi~igEiR---d~~ta~~a---~~a 248 (401)
T d1p9ra_ 204 -----------------------GQTQVNPRVDMT------FARGLRAILRQDPDVVMVGEIR---DLETAQIA---VQA 248 (401)
T ss_dssp -----------------------EEEECBGGGTBC------HHHHHHHHGGGCCSEEEESCCC---SHHHHHHH---HHH
T ss_pred -----------------------CEEEECCCCCCC------HHHHHHHHHHHCCCEEEECCCC---CHHHHHHH---HHH
T ss_conf -----------------------702655876779------9999999984138889845768---75999999---999
Q ss_pred HHCCCEEEEECCCCHHHHHCCE
Q ss_conf 7079739998259236750398
Q 001438 566 VMVGRTTVVVAHRLSTIRNADV 587 (1077)
Q Consensus 566 ~~~~~t~i~itH~~~~~~~~d~ 587 (1077)
...|..++..-|--+...-.+|
T Consensus 249 a~tGhlV~tTlHa~~a~~~~~R 270 (401)
T d1p9ra_ 249 SLTGHLVMSTLHTNTAVGAVTR 270 (401)
T ss_dssp HHTTCEEEEEECCSSSHHHHHH
T ss_pred HHCCCEEEEEECCCCHHHHHHH
T ss_conf 7249858998336766766543
|
| >d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.84 E-value=0.02 Score=30.77 Aligned_cols=24 Identities=33% Similarity=0.508 Sum_probs=20.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999983999958999999960467
Q 001438 412 IVALVGGSGSGKSTVISLIERFYE 435 (1077)
Q Consensus 412 ~~~ivG~~GsGKStl~~~l~~~~~ 435 (1077)
.+.|+|||||||+||.+.|....+
T Consensus 3 pIvl~GpsG~GK~tl~~~L~~~~~ 26 (186)
T d1gkya_ 3 PIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHCT
T ss_pred EEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 699989999998999999997488
|
| >d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=93.79 E-value=0.019 Score=30.87 Aligned_cols=34 Identities=41% Similarity=0.589 Sum_probs=27.6
Q ss_pred ECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEC
Q ss_conf 52996999983999958999999960467984179999
Q 001438 407 IPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLD 444 (1077)
Q Consensus 407 i~~g~~~~ivG~~GsGKStl~~~l~~~~~~~~G~i~~~ 444 (1077)
++++..+.|+||+||||||+.+.|...| |-..++
T Consensus 5 ~~~~~iI~l~G~pGSGKsT~a~~La~~~----g~~~is 38 (194)
T d3adka_ 5 LKKSKIIFVVGGPGSGKGTQCEKIVQKY----GYTHLS 38 (194)
T ss_dssp HHTSCEEEEEECTTSSHHHHHHHHHHHT----CCEEEE
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHH----CCEEEE
T ss_conf 4678289998999998799999999986----984683
|
| >d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Extracellular secretion NTPase EpsE species: Vibrio cholerae [TaxId: 666]
Probab=93.71 E-value=0.029 Score=29.54 Aligned_cols=57 Identities=14% Similarity=0.214 Sum_probs=28.9
Q ss_pred CCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCHH
Q ss_conf 9948999999999851399899982768899989899999999987079739998259236
Q 001438 521 LSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLST 581 (1077)
Q Consensus 521 lSgGqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~ 581 (1077)
++..|.+. +-+++-+..-++|+-=||.+==..+-+.+.+.+.+ .++.++.+-...++
T Consensus 142 ~~~~~~~~--l~~l~~~~~GliLvtGpTGSGKSTTl~~~l~~~~~--~~~~i~tiEdPiE~ 198 (401)
T d1p9ra_ 142 MTAHNHDN--FRRLIKRPHGIILVTGPTGSGKSTTLYAGLQELNS--SERNILTVEDPIEF 198 (401)
T ss_dssp CCHHHHHH--HHHHHTSSSEEEEEECSTTSCHHHHHHHHHHHHCC--TTSCEEEEESSCCS
T ss_pred CCHHHHHH--HHHHHHHHHCEEEEECCCCCCCCHHHHHHHHHHCC--CCCEEEEECCCCCC
T ss_conf 35777899--99998641054898767877744779998666257--87469996267434
|
| >d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Uridylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.69 E-value=0.025 Score=30.02 Aligned_cols=32 Identities=25% Similarity=0.446 Sum_probs=25.7
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEC
Q ss_conf 996999983999958999999960467984179999
Q 001438 409 AGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLD 444 (1077)
Q Consensus 409 ~g~~~~ivG~~GsGKStl~~~l~~~~~~~~G~i~~~ 444 (1077)
+-..+.|+||+||||||+.+.|...| |-+.++
T Consensus 7 ~~~iI~i~GppGSGKsT~a~~La~~~----g~~~is 38 (196)
T d1ukza_ 7 QVSVIFVLGGPGAGKGTQCEKLVKDY----SFVHLS 38 (196)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHHS----SCEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH----CCEEEE
T ss_conf 97289998999999899999999985----990885
|
| >d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.62 E-value=0.01 Score=32.92 Aligned_cols=27 Identities=41% Similarity=0.511 Sum_probs=23.7
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 996999983999958999999960467
Q 001438 409 AGKIVALVGGSGSGKSTVISLIERFYE 435 (1077)
Q Consensus 409 ~g~~~~ivG~~GsGKStl~~~l~~~~~ 435 (1077)
+|..+.++|++||||||+.+.|...+.
T Consensus 18 ~g~vI~L~G~pGSGKTTiAk~La~~l~ 44 (195)
T d1x6va3 18 RGCTVWLTGLSGAGKTTVSMALEEYLV 44 (195)
T ss_dssp CCEEEEEESSCHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 996999889999999999999999997
|
| >d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Chloroplast protein translocon GTPase Toc34 species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=93.57 E-value=0.026 Score=29.93 Aligned_cols=37 Identities=16% Similarity=0.272 Sum_probs=16.6
Q ss_pred EEEEECCC-CCCCHHHHHHHHHHHHHHH----CCCEEEEECCC
Q ss_conf 99982768-8999898999999999870----79739998259
Q 001438 541 ILLLDEAT-SALDAESENSVQEALDRVM----VGRTTVVVAHR 578 (1077)
Q Consensus 541 illlDe~t-s~lD~~~~~~i~~~i~~~~----~~~t~i~itH~ 578 (1077)
++++.... ..++......+. .+...+ ...++|+.||-
T Consensus 116 il~v~~~~~~r~~~~~~~~l~-~l~~~fg~~~~~~~ivv~t~~ 157 (257)
T d1h65a_ 116 LLYVDRLDAYRVDNLDKLVAK-AITDSFGKGIWNKAIVALTHA 157 (257)
T ss_dssp EEEEEESSCCCCCHHHHHHHH-HHHHHHCGGGGGGEEEEEECC
T ss_pred EEEEEECCCCCCCHHHHHHHH-HHHHHCCHHHHHCEEEEEECC
T ss_conf 999997888778999999999-999873265663889999886
|
| >d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]
Probab=93.50 E-value=0.017 Score=31.34 Aligned_cols=23 Identities=26% Similarity=0.297 Sum_probs=20.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998399995899999996046
Q 001438 412 IVALVGGSGSGKSTVISLIERFY 434 (1077)
Q Consensus 412 ~~~ivG~~GsGKStl~~~l~~~~ 434 (1077)
.+.|+|++||||||+.+.|...+
T Consensus 6 ~I~i~G~pGsGKTTia~~La~~l 28 (173)
T d1rkba_ 6 NILLTGTPGVGKTTLGKELASKS 28 (173)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 79898999999899999999997
|
| >d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Escherichia coli [TaxId: 562]
Probab=93.40 E-value=0.023 Score=30.24 Aligned_cols=24 Identities=33% Similarity=0.451 Sum_probs=20.9
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 699998399995899999996046
Q 001438 411 KIVALVGGSGSGKSTVISLIERFY 434 (1077)
Q Consensus 411 ~~~~ivG~~GsGKStl~~~l~~~~ 434 (1077)
+.+.++||+||||||+.+.|...+
T Consensus 3 k~I~l~G~~GsGKSTvak~La~~L 26 (169)
T d1kaga_ 3 RNIFLVGPMGAGKSTIGRQLAQQL 26 (169)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 749998999999999999999996
|
| >d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: LAO/AO transport system kinase ArgK species: Escherichia coli [TaxId: 562]
Probab=93.35 E-value=0.021 Score=30.56 Aligned_cols=10 Identities=40% Similarity=0.541 Sum_probs=6.3
Q ss_pred ECCCCEEEEE
Q ss_conf 5299699998
Q 001438 407 IPAGKIVALV 416 (1077)
Q Consensus 407 i~~g~~~~iv 416 (1077)
...|.+++++
T Consensus 79 ~~~g~~vavl 88 (327)
T d2p67a1 79 IREGLKVAVI 88 (327)
T ss_dssp HHTTCCEEEE
T ss_pred HHCCCCEEEE
T ss_conf 7569833220
|
| >d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein engB species: Pyrococcus horikoshii [TaxId: 53953]
Probab=93.26 E-value=0.028 Score=29.66 Aligned_cols=22 Identities=32% Similarity=0.389 Sum_probs=20.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999839999589999999604
Q 001438 412 IVALVGGSGSGKSTVISLIERF 433 (1077)
Q Consensus 412 ~~~ivG~~GsGKStl~~~l~~~ 433 (1077)
.++++|++|+|||||++.|.|.
T Consensus 2 ~I~lvG~~nvGKSsLin~l~~~ 23 (184)
T d2cxxa1 2 TIIFAGRSNVGKSTLIYRLTGK 23 (184)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 8999999998899999999689
|
| >d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.25 E-value=0.024 Score=30.15 Aligned_cols=23 Identities=39% Similarity=0.479 Sum_probs=20.2
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99983999958999999960467
Q 001438 413 VALVGGSGSGKSTVISLIERFYE 435 (1077)
Q Consensus 413 ~~ivG~~GsGKStl~~~l~~~~~ 435 (1077)
++|+|||||||+|+.+.|...++
T Consensus 3 Ivl~GPsGsGK~tl~~~L~~~~~ 25 (190)
T d1lvga_ 3 VVLSGPSGAGKSTLLKKLFQEHS 25 (190)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHCC
T ss_conf 99999999999999999997488
|
| >d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=93.23 E-value=0.033 Score=29.08 Aligned_cols=23 Identities=30% Similarity=0.400 Sum_probs=20.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998399995899999996046
Q 001438 412 IVALVGGSGSGKSTVISLIERFY 434 (1077)
Q Consensus 412 ~~~ivG~~GsGKStl~~~l~~~~ 434 (1077)
+++++|++|+|||||++.|.|.-
T Consensus 2 ~V~liG~~n~GKSsLi~~L~~~~ 24 (171)
T d1mkya1 2 TVLIVGRPNVGKSTLFNKLVKKK 24 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89999999998999999996777
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Probab=93.15 E-value=0.17 Score=23.80 Aligned_cols=63 Identities=13% Similarity=0.087 Sum_probs=35.3
Q ss_pred CHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHH-HHHHHHHHHHHHHCCCEEEEECCCCHHHHH
Q ss_conf 948999999999851399899982768899989-899999999987079739998259236750
Q 001438 522 SGGQKQRIAISRAIVKNPSILLLDEATSALDAE-SENSVQEALDRVMVGRTTVVVAHRLSTIRN 584 (1077)
Q Consensus 522 SgGqkqri~lARal~~~~~illlDe~ts~lD~~-~~~~i~~~i~~~~~~~t~i~itH~~~~~~~ 584 (1077)
...++..+..+...+.++++++++=.-..-+.. ......+.+.....++.+|++.+.......
T Consensus 64 ~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~iilv~NK~Dl~~~ 127 (161)
T d2gj8a1 64 DEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADITGE 127 (161)
T ss_dssp SHHHHHHHHHHHHHHHTCSEEEEEEETTTCCCCSHHHHCHHHHHHSCTTCCEEEEEECHHHHCC
T ss_pred CCCHHHHHHHHHHHHHHCCCCCEEECCCCCCCHHHHHHHHHHHHHCCCCCCEEECCCHHHHHHH
T ss_conf 5202478999999987413320110256542034555444555420141010204654443355
|
| >d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit species: Streptococcus pyogenes [TaxId: 1314]
Probab=93.10 E-value=0.036 Score=28.86 Aligned_cols=35 Identities=29% Similarity=0.320 Sum_probs=26.8
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECC
Q ss_conf 9969999839999589999999604679841799999
Q 001438 409 AGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDG 445 (1077)
Q Consensus 409 ~g~~~~ivG~~GsGKStl~~~l~~~~~~~~G~i~~~g 445 (1077)
..+.+.++||+||||||+.+.|.+++.. +-+.+++
T Consensus 31 ~P~~ilL~GpPGtGKT~la~~la~~~~~--~~~~i~~ 65 (273)
T d1gvnb_ 31 SPTAFLLGGQPGSGKTSLRSAIFEETQG--NVIVIDN 65 (273)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHTTT--CCEEECT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHC--CEEEEEC
T ss_conf 9979998897998899999999998651--5489832
|
| >d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.96 E-value=0.049 Score=27.83 Aligned_cols=29 Identities=21% Similarity=0.360 Sum_probs=24.9
Q ss_pred EECCCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 85299699998399995899999996046
Q 001438 406 DIPAGKIVALVGGSGSGKSTVISLIERFY 434 (1077)
Q Consensus 406 ~i~~g~~~~ivG~~GsGKStl~~~l~~~~ 434 (1077)
-+++|+.+.|.||+|||||+++.-++...
T Consensus 19 Gi~~G~v~~i~G~~GsGKT~l~l~la~~~ 47 (242)
T d1n0wa_ 19 GIETGSITEMFGEFRTGKTQICHTLAVTC 47 (242)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCCCCEEEEEEECCCCCHHHHHHHHHHHH
T ss_conf 98599799999589999999999999999
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.88 E-value=0.038 Score=28.69 Aligned_cols=22 Identities=23% Similarity=0.487 Sum_probs=20.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999839999589999999604
Q 001438 412 IVALVGGSGSGKSTVISLIERF 433 (1077)
Q Consensus 412 ~~~ivG~~GsGKStl~~~l~~~ 433 (1077)
.++|+|++|+|||||++.|.+.
T Consensus 5 ~V~lvG~~n~GKTSLln~l~~~ 26 (209)
T d1nrjb_ 5 SIIIAGPQNSGKTSLLTLLTTD 26 (209)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999999998899999999679
|
| >d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Probab=92.87 E-value=0.04 Score=28.51 Aligned_cols=22 Identities=36% Similarity=0.522 Sum_probs=20.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999839999589999999604
Q 001438 412 IVALVGGSGSGKSTVISLIERF 433 (1077)
Q Consensus 412 ~~~ivG~~GsGKStl~~~l~~~ 433 (1077)
+++++|++|+|||||++.|.|.
T Consensus 7 ~I~lvG~~~~GKSSLin~l~~~ 28 (178)
T d1wf3a1 7 FVAIVGKPNVGKSTLLNNLLGV 28 (178)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999999999999999999688
|
| >d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxycytidine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.83 E-value=0.026 Score=29.94 Aligned_cols=27 Identities=26% Similarity=0.493 Sum_probs=24.1
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 996999983999958999999960467
Q 001438 409 AGKIVALVGGSGSGKSTVISLIERFYE 435 (1077)
Q Consensus 409 ~g~~~~ivG~~GsGKStl~~~l~~~~~ 435 (1077)
+++.++|-|+.||||||++++|...+.
T Consensus 1 ~~k~I~ieG~dGsGKST~~~~L~~~l~ 27 (241)
T d1p5zb_ 1 RIKKISIEGNIAAGKSTFVNILKQLCE 27 (241)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 998899987888779999999999973
|
| >d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=92.54 E-value=0.037 Score=28.76 Aligned_cols=25 Identities=20% Similarity=0.498 Sum_probs=21.8
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 6999983999958999999960467
Q 001438 411 KIVALVGGSGSGKSTVISLIERFYE 435 (1077)
Q Consensus 411 ~~~~ivG~~GsGKStl~~~l~~~~~ 435 (1077)
..+.++|.+||||||+.+.|.+.+.
T Consensus 3 ~li~l~GlpgsGKSTla~~L~~~l~ 27 (213)
T d1bifa1 3 TLIVMVGLPARGKTYISKKLTRYLN 27 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 8999989999999999999999997
|
| >d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=92.50 E-value=0.018 Score=31.07 Aligned_cols=41 Identities=32% Similarity=0.263 Sum_probs=30.3
Q ss_pred EECCCCEEEEECCCCCCHHHHHHHHHCCCCCC--CCEEEECCE
Q ss_conf 85299699998399995899999996046798--417999995
Q 001438 406 DIPAGKIVALVGGSGSGKSTVISLIERFYEPL--SGEILLDGN 446 (1077)
Q Consensus 406 ~i~~g~~~~ivG~~GsGKStl~~~l~~~~~~~--~G~i~~~g~ 446 (1077)
.-++|..+-+.|.+||||||+.+.|...+... .-.+.+||.
T Consensus 20 ~~~kg~vIwltGlsGsGKTTia~~L~~~l~~~~~~~~~~ldgD 62 (208)
T d1m7ga_ 20 RNQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGD 62 (208)
T ss_dssp HTSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHH
T ss_pred HCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCEEEEECCH
T ss_conf 5899869999899999989999999988777427508997536
|
| >d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Bacillus subtilis [TaxId: 1423]
Probab=92.39 E-value=0.027 Score=29.75 Aligned_cols=22 Identities=41% Similarity=0.495 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999839999589999999604
Q 001438 412 IVALVGGSGSGKSTVISLIERF 433 (1077)
Q Consensus 412 ~~~ivG~~GsGKStl~~~l~~~ 433 (1077)
-|||+|++++|||||++.|.|.
T Consensus 3 ~VaiiG~~nvGKSSLin~L~~~ 24 (185)
T d1lnza2 3 DVGLVGFPSVGKSTLLSVVSSA 24 (185)
T ss_dssp CEEEESSTTSSHHHHHHHSEEE
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 6999899998799999999689
|
| >d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.37 E-value=0.059 Score=27.24 Aligned_cols=29 Identities=24% Similarity=0.253 Sum_probs=25.0
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 29969999839999589999999604679
Q 001438 408 PAGKIVALVGGSGSGKSTVISLIERFYEP 436 (1077)
Q Consensus 408 ~~g~~~~ivG~~GsGKStl~~~l~~~~~~ 436 (1077)
++|.+++|-|+-||||||++++|...+..
T Consensus 1 ~rG~lI~ieG~dGsGKsT~~~~L~~~L~~ 29 (209)
T d1nn5a_ 1 RRGALIVLEGVDRAGKSTQSRKLVEALCA 29 (209)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 98059999899888999999999999987
|
| >d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.36 E-value=0.04 Score=28.49 Aligned_cols=23 Identities=39% Similarity=0.654 Sum_probs=20.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998399995899999996046
Q 001438 412 IVALVGGSGSGKSTVISLIERFY 434 (1077)
Q Consensus 412 ~~~ivG~~GsGKStl~~~l~~~~ 434 (1077)
.+.|.||+||||||..+.|...|
T Consensus 3 iI~i~GppGSGKsT~a~~La~~~ 25 (194)
T d1teva_ 3 VVFVLGGPGAGKGTQCARIVEKY 25 (194)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99997999999899999999986
|
| >d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Escherichia coli [TaxId: 562]
Probab=92.29 E-value=0.061 Score=27.14 Aligned_cols=27 Identities=26% Similarity=0.417 Sum_probs=24.1
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 996999983999958999999960467
Q 001438 409 AGKIVALVGGSGSGKSTVISLIERFYE 435 (1077)
Q Consensus 409 ~g~~~~ivG~~GsGKStl~~~l~~~~~ 435 (1077)
+|++++|-|+.||||||+++.|...+.
T Consensus 1 rgkfIviEG~dGsGKsT~~~~L~~~L~ 27 (210)
T d4tmka_ 1 RSKYIVIEGLEGAGKTTARNVVVETLE 27 (210)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 987899989988879999999999999
|
| >d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=92.27 E-value=0.041 Score=28.43 Aligned_cols=23 Identities=35% Similarity=0.443 Sum_probs=20.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998399995899999996046
Q 001438 412 IVALVGGSGSGKSTVISLIERFY 434 (1077)
Q Consensus 412 ~~~ivG~~GsGKStl~~~l~~~~ 434 (1077)
.+.|+||+||||||+.+.|...|
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~~ 24 (182)
T d1zina1 2 NLVLMGLPGAGKGTQAEKIVAAY 24 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 89998899999899999999987
|
| >d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=92.23 E-value=0.041 Score=28.38 Aligned_cols=24 Identities=38% Similarity=0.538 Sum_probs=21.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999983999958999999960467
Q 001438 412 IVALVGGSGSGKSTVISLIERFYE 435 (1077)
Q Consensus 412 ~~~ivG~~GsGKStl~~~l~~~~~ 435 (1077)
.++|-||+||||||..++|...|.
T Consensus 5 ~IaIdGp~GsGKgT~ak~La~~lg 28 (223)
T d1q3ta_ 5 QIAIDGPASSGKSTVAKIIAKDFG 28 (223)
T ss_dssp EEEEECSSCSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 999789998798999999999969
|
| >d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Metallochaperone MeaB species: Methylobacterium extorquens [TaxId: 408]
Probab=92.23 E-value=0.045 Score=28.13 Aligned_cols=26 Identities=31% Similarity=0.424 Sum_probs=22.3
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99699998399995899999996046
Q 001438 409 AGKIVALVGGSGSGKSTVISLIERFY 434 (1077)
Q Consensus 409 ~g~~~~ivG~~GsGKStl~~~l~~~~ 434 (1077)
+.-.++|.|++|+|||||+..+...+
T Consensus 50 ~~~~igitG~pGaGKSTli~~l~~~~ 75 (323)
T d2qm8a1 50 RAIRVGITGVPGVGKSTTIDALGSLL 75 (323)
T ss_dssp CSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 81598611799888999999999987
|
| >d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus globisporus [TaxId: 1459]
Probab=92.19 E-value=0.042 Score=28.32 Aligned_cols=23 Identities=35% Similarity=0.465 Sum_probs=20.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998399995899999996046
Q 001438 412 IVALVGGSGSGKSTVISLIERFY 434 (1077)
Q Consensus 412 ~~~ivG~~GsGKStl~~~l~~~~ 434 (1077)
.+.|+||+||||||+.+.|...|
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~~ 24 (182)
T d1s3ga1 2 NIVLMGLPGAGKGTQADRIVEKY 24 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 89998899998799999999987
|
| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermus aquaticus [TaxId: 271]
Probab=92.08 E-value=0.068 Score=26.76 Aligned_cols=29 Identities=41% Similarity=0.850 Sum_probs=23.4
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 29969999839999589999999604679
Q 001438 408 PAGKIVALVGGSGSGKSTVISLIERFYEP 436 (1077)
Q Consensus 408 ~~g~~~~ivG~~GsGKStl~~~l~~~~~~ 436 (1077)
+++..+++|||+|+||||.+.-|...+..
T Consensus 4 ~~~~vi~lvGptGvGKTTTiaKLA~~~~~ 32 (207)
T d1okkd2 4 PKGRVVLVVGVNGVGKTTTIAKLGRYYQN 32 (207)
T ss_dssp CSSSEEEEECSTTSSHHHHHHHHHHHHHT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 99779999899999889999999999997
|
| >d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=92.05 E-value=0.057 Score=27.35 Aligned_cols=22 Identities=32% Similarity=0.492 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999839999589999999604
Q 001438 412 IVALVGGSGSGKSTVISLIERF 433 (1077)
Q Consensus 412 ~~~ivG~~GsGKStl~~~l~~~ 433 (1077)
.|+++|.+++|||||++.|.|.
T Consensus 7 ~I~iiG~~nvGKSSLin~L~~~ 28 (179)
T d1egaa1 7 FIAIVGRPNVGKSTLLNKLLGQ 28 (179)
T ss_dssp EEEEECSSSSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999979999899999999589
|
| >d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyribonucleoside kinase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=91.99 E-value=0.048 Score=27.88 Aligned_cols=26 Identities=31% Similarity=0.465 Sum_probs=22.6
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99699998399995899999996046
Q 001438 409 AGKIVALVGGSGSGKSTVISLIERFY 434 (1077)
Q Consensus 409 ~g~~~~ivG~~GsGKStl~~~l~~~~ 434 (1077)
+.-.++|-|+.||||||+++.|...+
T Consensus 8 kp~~I~ieG~~GsGKTTl~~~L~~~l 33 (197)
T d2vp4a1 8 QPFTVLIEGNIGSGKTTYLNHFEKYK 33 (197)
T ss_dssp CCEEEEEECSTTSCHHHHHHTTGGGT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 86199988999988899999999870
|
| >d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Thermus thermophilus [TaxId: 274]
Probab=91.93 E-value=0.056 Score=27.41 Aligned_cols=22 Identities=45% Similarity=0.720 Sum_probs=19.2
Q ss_pred CEEEEECCCCCCHHHHHHHHHC
Q ss_conf 6999983999958999999960
Q 001438 411 KIVALVGGSGSGKSTVISLIER 432 (1077)
Q Consensus 411 ~~~~ivG~~GsGKStl~~~l~~ 432 (1077)
=.+||.|++||||||+.+.|..
T Consensus 4 ~IIgitG~~gSGKstva~~l~~ 25 (191)
T d1uf9a_ 4 IIIGITGNIGSGKSTVAALLRS 25 (191)
T ss_dssp EEEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
T ss_conf 8999989887789999999998
|
| >d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Erwinia chrysanthemi [TaxId: 556]
Probab=91.85 E-value=0.052 Score=27.66 Aligned_cols=24 Identities=29% Similarity=0.411 Sum_probs=20.6
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 699998399995899999996046
Q 001438 411 KIVALVGGSGSGKSTVISLIERFY 434 (1077)
Q Consensus 411 ~~~~ivG~~GsGKStl~~~l~~~~ 434 (1077)
+.+.++|++||||||+.+.|...+
T Consensus 3 ~~Iil~G~~GsGKSTia~~LA~~L 26 (170)
T d1e6ca_ 3 EPIFMVGARGCGMTTVGRELARAL 26 (170)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCEEEECCCCCCHHHHHHHHHHHH
T ss_conf 988998899998899999999994
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=91.83 E-value=0.048 Score=27.93 Aligned_cols=27 Identities=15% Similarity=0.285 Sum_probs=22.8
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 299699998399995899999996046
Q 001438 408 PAGKIVALVGGSGSGKSTVISLIERFY 434 (1077)
Q Consensus 408 ~~g~~~~ivG~~GsGKStl~~~l~~~~ 434 (1077)
++.-++++||++|+|||||++.+.+..
T Consensus 11 ~k~~kI~lvG~~~vGKTsLl~~l~~~~ 37 (186)
T d1f6ba_ 11 KKTGKLVFLGLDNAGKTTLLHMLKDDR 37 (186)
T ss_dssp TCCEEEEEEEETTSSHHHHHHHHSCC-
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 777789999999989899999996788
|
| >d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL1 [TaxId: 9606]
Probab=91.81 E-value=0.061 Score=27.11 Aligned_cols=22 Identities=23% Similarity=0.416 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999839999589999999604
Q 001438 412 IVALVGGSGSGKSTVISLIERF 433 (1077)
Q Consensus 412 ~~~ivG~~GsGKStl~~~l~~~ 433 (1077)
++++||++|+|||||++.+.+-
T Consensus 7 kI~ivG~~~vGKSSLi~~~~~~ 28 (169)
T d1upta_ 7 RILILGLDGAGKTTILYRLQVG 28 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999999998999999999679
|
| >d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Maize (Zea mays) [TaxId: 4577]
Probab=91.81 E-value=0.043 Score=28.28 Aligned_cols=23 Identities=39% Similarity=0.528 Sum_probs=20.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998399995899999996046
Q 001438 412 IVALVGGSGSGKSTVISLIERFY 434 (1077)
Q Consensus 412 ~~~ivG~~GsGKStl~~~l~~~~ 434 (1077)
.+.|.||+||||||+.+.|..-|
T Consensus 5 ~I~i~GppGsGKsT~a~~La~~~ 27 (189)
T d1zaka1 5 KVMISGAPASGKGTQCELIKTKY 27 (189)
T ss_dssp CEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99998899999899999999987
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Probab=91.77 E-value=0.063 Score=27.05 Aligned_cols=22 Identities=23% Similarity=0.339 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999839999589999999604
Q 001438 412 IVALVGGSGSGKSTVISLIERF 433 (1077)
Q Consensus 412 ~~~ivG~~GsGKStl~~~l~~~ 433 (1077)
++.++|++|+|||||++.+.+.
T Consensus 2 kivlvG~~~vGKSsLi~~l~~~ 23 (160)
T d1r8sa_ 2 RILMVGLDAAGKTTILYKLKLG 23 (160)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 8999999998989999999659
|
| >d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.60 E-value=0.077 Score=26.40 Aligned_cols=28 Identities=25% Similarity=0.497 Sum_probs=24.9
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 9969999839999589999999604679
Q 001438 409 AGKIVALVGGSGSGKSTVISLIERFYEP 436 (1077)
Q Consensus 409 ~g~~~~ivG~~GsGKStl~~~l~~~~~~ 436 (1077)
+|.++++-|+-||||||++++|...+..
T Consensus 2 kGk~I~iEG~DGsGKST~~~~L~~~L~~ 29 (214)
T d1tmka_ 2 RGKLILIEGLDRTGKTTQCNILYKKLQP 29 (214)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHTTT
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 7689999899888699999999999971
|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Thermus thermophilus [TaxId: 274]
Probab=91.60 E-value=0.036 Score=28.80 Aligned_cols=21 Identities=38% Similarity=0.613 Sum_probs=19.7
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999839999589999999604
Q 001438 413 VALVGGSGSGKSTVISLIERF 433 (1077)
Q Consensus 413 ~~ivG~~GsGKStl~~~l~~~ 433 (1077)
+||+|++++|||||++.|.|.
T Consensus 4 VaivG~~nvGKSTLin~L~~~ 24 (180)
T d1udxa2 4 VGLVGYPNAGKSSLLAAMTRA 24 (180)
T ss_dssp EEEECCGGGCHHHHHHHHCSS
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 999899999899999999689
|
| >d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Haemophilus influenzae [TaxId: 727]
Probab=91.56 E-value=0.066 Score=26.86 Aligned_cols=21 Identities=52% Similarity=0.852 Sum_probs=18.6
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999983999958999999960
Q 001438 412 IVALVGGSGSGKSTVISLIER 432 (1077)
Q Consensus 412 ~~~ivG~~GsGKStl~~~l~~ 432 (1077)
.+||+|+.||||||+.+.+..
T Consensus 4 iIgITG~igSGKStv~~~l~~ 24 (205)
T d1jjva_ 4 IVGLTGGIGSGKTTIANLFTD 24 (205)
T ss_dssp EEEEECSTTSCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999888887889999999998
|
| >d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Escherichia coli [TaxId: 562]
Probab=91.51 E-value=0.057 Score=27.34 Aligned_cols=25 Identities=24% Similarity=0.417 Sum_probs=22.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 9999839999589999999604679
Q 001438 412 IVALVGGSGSGKSTVISLIERFYEP 436 (1077)
Q Consensus 412 ~~~ivG~~GsGKStl~~~l~~~~~~ 436 (1077)
.++|-||+||||+|+.+.|...|..
T Consensus 5 iI~I~GppGSGKgT~ak~La~~~gl 29 (225)
T d1ckea_ 5 VITIDGPSGAGKGTLCKAMAEALQW 29 (225)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCC
T ss_conf 8997799988989999999999699
|
| >d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Campylobacter jejuni [TaxId: 197]
Probab=91.42 E-value=0.061 Score=27.13 Aligned_cols=23 Identities=30% Similarity=0.427 Sum_probs=20.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998399995899999996046
Q 001438 412 IVALVGGSGSGKSTVISLIERFY 434 (1077)
Q Consensus 412 ~~~ivG~~GsGKStl~~~l~~~~ 434 (1077)
.+.++|++||||||+.+.|...+
T Consensus 2 ~I~liG~~GsGKsTi~k~La~~l 24 (161)
T d1viaa_ 2 NIVFIGFMGSGKSTLARALAKDL 24 (161)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
T ss_conf 39998999998899999999983
|
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.39 E-value=0.076 Score=26.43 Aligned_cols=23 Identities=26% Similarity=0.267 Sum_probs=20.2
Q ss_pred CEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 69999839999589999999604
Q 001438 411 KIVALVGGSGSGKSTVISLIERF 433 (1077)
Q Consensus 411 ~~~~ivG~~GsGKStl~~~l~~~ 433 (1077)
+.++|+|++|+|||||++.+.+-
T Consensus 1 k~V~ivG~~~~GKTsLl~~l~~~ 23 (207)
T d2fh5b1 1 RAVLFVGLCDSGKTLLFVRLLTG 23 (207)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHHCC
T ss_conf 98999999998989999999809
|
| >d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=91.38 E-value=0.059 Score=27.21 Aligned_cols=35 Identities=17% Similarity=0.359 Sum_probs=25.4
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECC
Q ss_conf 9969999839999589999999604679841799999
Q 001438 409 AGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDG 445 (1077)
Q Consensus 409 ~g~~~~ivG~~GsGKStl~~~l~~~~~~~~G~i~~~g 445 (1077)
++.-+.++||+|||||.|.+.+.+.+... -+.+++
T Consensus 48 ~~~~iLl~GPpG~GKT~lAkalA~~~~~~--~~~i~~ 82 (309)
T d1ofha_ 48 TPKNILMIGPTGVGKTEIARRLAKLANAP--FIKVEA 82 (309)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHTCC--EEEEEG
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHCCCCC--HHCCCC
T ss_conf 98669998999988889999986213221--000344
|
| >d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.36 E-value=0.085 Score=26.07 Aligned_cols=27 Identities=26% Similarity=0.416 Sum_probs=23.8
Q ss_pred EECCCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 852996999983999958999999960
Q 001438 406 DIPAGKIVALVGGSGSGKSTVISLIER 432 (1077)
Q Consensus 406 ~i~~g~~~~ivG~~GsGKStl~~~l~~ 432 (1077)
-+++|+.+-|.|++||||||+..-+.-
T Consensus 30 Gi~~G~~~li~G~pGsGKT~l~lq~~~ 56 (251)
T d1szpa2 30 GVETGSITELFGEFRTGKSQLCHTLAV 56 (251)
T ss_dssp SEESSSEEEEEESTTSSHHHHHHHHTT
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 986996999983899988999999999
|
| >d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Transcription termination factor Rho, ATPase domain species: Escherichia coli [TaxId: 562]
Probab=91.33 E-value=0.07 Score=26.70 Aligned_cols=36 Identities=19% Similarity=0.239 Sum_probs=29.0
Q ss_pred CCCCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 2000038852996999983999958999999960467
Q 001438 399 IFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYE 435 (1077)
Q Consensus 399 ~l~~~~~~i~~g~~~~ivG~~GsGKStl~~~l~~~~~ 435 (1077)
+++.+ +.+-+|++.+|+|++|+|||+|+.-+.+...
T Consensus 33 ~ID~l-~PigrGQr~~I~g~~g~GKT~l~~~i~~~~~ 68 (289)
T d1xpua3 33 VLDLA-SPIGRGQRGLIVAPPKAGKTMLLQNIAQSIA 68 (289)
T ss_dssp HHHHH-SCCBTTCEEEEEECSSSSHHHHHHHHHHHHH
T ss_pred EEEEC-CCCCCCCEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 56412-5645787556867999887899999999775
|
| >d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cell division protein MukB species: Escherichia coli [TaxId: 562]
Probab=91.32 E-value=0.0034 Score=36.49 Aligned_cols=34 Identities=29% Similarity=0.440 Sum_probs=26.7
Q ss_pred CCCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 00003885299699998399995899999996046
Q 001438 400 FDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFY 434 (1077)
Q Consensus 400 l~~~~~~i~~g~~~~ivG~~GsGKStl~~~l~~~~ 434 (1077)
+++.++.+.+| ++.|+|++||||||++.+|.-.+
T Consensus 15 ~~~~~i~f~~~-~tvi~G~NGsGKStil~Ai~~~L 48 (222)
T d1qhla_ 15 FFARTFDLDEL-VTTLSGGNGAGKSTTMAAFVTAL 48 (222)
T ss_dssp EEEEEECHHHH-HHHHHSCCSHHHHHHHHHHHHHH
T ss_pred EEEEEEECCCC-EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 70279974998-08998899998799999999996
|
| >d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Probab=91.30 E-value=0.056 Score=27.40 Aligned_cols=25 Identities=36% Similarity=0.549 Sum_probs=21.5
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 6999983999958999999960467
Q 001438 411 KIVALVGGSGSGKSTVISLIERFYE 435 (1077)
Q Consensus 411 ~~~~ivG~~GsGKStl~~~l~~~~~ 435 (1077)
+.+.|.|++||||||+++.|...+.
T Consensus 2 kiivi~G~~GsGKTT~~~~La~~L~ 26 (194)
T d1nksa_ 2 KIGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 1999989899898999999999998
|
| >d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.27 E-value=0.091 Score=25.85 Aligned_cols=26 Identities=27% Similarity=0.362 Sum_probs=22.3
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 69999839999589999999604679
Q 001438 411 KIVALVGGSGSGKSTVISLIERFYEP 436 (1077)
Q Consensus 411 ~~~~ivG~~GsGKStl~~~l~~~~~~ 436 (1077)
..+.+.||+|+||||+++++.+.+..
T Consensus 53 ~~lll~GPpG~GKTt~a~~la~~~~~ 78 (253)
T d1sxja2 53 RAAMLYGPPGIGKTTAAHLVAQELGY 78 (253)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHTTC
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 44999879999888999999999875
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Probab=91.24 E-value=0.1 Score=25.52 Aligned_cols=23 Identities=17% Similarity=0.276 Sum_probs=20.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998399995899999996046
Q 001438 412 IVALVGGSGSGKSTVISLIERFY 434 (1077)
Q Consensus 412 ~~~ivG~~GsGKStl~~~l~~~~ 434 (1077)
+++++|++|+|||||++.+.+..
T Consensus 4 ki~ivG~~~~GKTsLi~~l~~~~ 26 (165)
T d1ksha_ 4 RLLMLGLDNAGKTTILKKFNGED 26 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHTTCC
T ss_pred EEEEECCCCCCHHHHHHHHCCCC
T ss_conf 99999999989999999980899
|
| >d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermotoga maritima [TaxId: 2336]
Probab=91.21 E-value=0.085 Score=26.07 Aligned_cols=28 Identities=29% Similarity=0.322 Sum_probs=23.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCC
Q ss_conf 9999839999589999999604679841
Q 001438 412 IVALVGGSGSGKSTVISLIERFYEPLSG 439 (1077)
Q Consensus 412 ~~~ivG~~GsGKStl~~~l~~~~~~~~G 439 (1077)
.+-+.||+|+||||+++++..++....+
T Consensus 37 ~~L~~GPpGtGKT~lA~~la~~~~~~~~ 64 (238)
T d1in4a2 37 HVLLAGPPGLGKTTLAHIIASELQTNIH 64 (238)
T ss_dssp CEEEESSTTSSHHHHHHHHHHHHTCCEE
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCCCCC
T ss_conf 4898799997388999999850388853
|
| >d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor SelB, N-terminal domain species: Methanococcus maripaludis [TaxId: 39152]
Probab=91.19 E-value=0.072 Score=26.59 Aligned_cols=22 Identities=18% Similarity=0.388 Sum_probs=19.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999839999589999999604
Q 001438 412 IVALVGGSGSGKSTVISLIERF 433 (1077)
Q Consensus 412 ~~~ivG~~GsGKStl~~~l~~~ 433 (1077)
.+||+|++.+|||||++.|.+.
T Consensus 7 nIaiiG~~naGKSTL~n~L~~~ 28 (179)
T d1wb1a4 7 NLGIFGHIDHGKTTLSKVLTEI 28 (179)
T ss_dssp EEEEEECTTSSHHHHHHHHHTT
T ss_pred EEEEEECCCCCHHHHHHHHHHH
T ss_conf 9999907787099999999974
|
| >d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Escherichia coli [TaxId: 562]
Probab=91.11 E-value=0.062 Score=27.07 Aligned_cols=24 Identities=29% Similarity=0.414 Sum_probs=20.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999983999958999999960467
Q 001438 412 IVALVGGSGSGKSTVISLIERFYE 435 (1077)
Q Consensus 412 ~~~ivG~~GsGKStl~~~l~~~~~ 435 (1077)
.+.++||+||||||..+.|...+.
T Consensus 2 ~I~i~G~pGSGKsT~~~~La~~~~ 25 (179)
T d1e4va1 2 RIILLGAPVAGKGTQAQFIMEKYG 25 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 899987999998999999999869
|
| >d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=91.05 E-value=0.096 Score=25.67 Aligned_cols=46 Identities=20% Similarity=0.432 Sum_probs=33.9
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHHHEEEECCCC
Q ss_conf 699998399995899999996046798417999995279999788742046880678
Q 001438 411 KIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIGLVNQEP 467 (1077)
Q Consensus 411 ~~~~ivG~~GsGKStl~~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~ 467 (1077)
+-+-++||+|||||-|++.|.++.+.. -+..|+.... ..|||..+.
T Consensus 50 sNILliGPTGvGKTlLAr~LAk~l~VP--Fv~~daT~fT---------eaGYvG~DV 95 (443)
T d1g41a_ 50 KNILMIGPTGVGKTEIARRLAKLANAP--FIKVEATKFT---------EVGYVGKEV 95 (443)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHTTCC--EEEEEGGGGC-------------CCCCT
T ss_pred CCEEEECCCCCCHHHHHHHHHHHHCCC--EEEEECCEEE---------ECCEEECCH
T ss_conf 647998999988999999999873898--8986255114---------111110444
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.00 E-value=0.083 Score=26.12 Aligned_cols=23 Identities=17% Similarity=0.371 Sum_probs=20.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998399995899999996046
Q 001438 412 IVALVGGSGSGKSTVISLIERFY 434 (1077)
Q Consensus 412 ~~~ivG~~GsGKStl~~~l~~~~ 434 (1077)
+++++|++|+|||||++.+.+..
T Consensus 2 KI~liG~~nvGKSSLln~l~~~~ 24 (166)
T d2qtvb1 2 KLLFLGLDNAGKTTLLHMLKNDR 24 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89999999999999999995899
|
| >d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]
Probab=90.92 E-value=0.083 Score=26.12 Aligned_cols=26 Identities=42% Similarity=0.562 Sum_probs=22.2
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 96999983999958999999960467
Q 001438 410 GKIVALVGGSGSGKSTVISLIERFYE 435 (1077)
Q Consensus 410 g~~~~ivG~~GsGKStl~~~l~~~~~ 435 (1077)
.=.+.|+||+||||||+.+.|...|.
T Consensus 6 ~mrIiliG~PGSGKtT~a~~La~~~g 31 (189)
T d2ak3a1 6 LLRAAIMGAPGSGKGTVSSRITKHFE 31 (189)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHBC
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 21699988999987999999999979
|
| >d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=90.80 E-value=0.081 Score=26.20 Aligned_cols=34 Identities=26% Similarity=0.334 Sum_probs=18.1
Q ss_pred CCCEEEEECCCCCCCH-------HHHHHHHHHHHHHHCCCE
Q ss_conf 9989998276889998-------989999999998707973
Q 001438 538 NPSILLLDEATSALDA-------ESENSVQEALDRVMVGRT 571 (1077)
Q Consensus 538 ~~~illlDe~ts~lD~-------~~~~~i~~~i~~~~~~~t 571 (1077)
.|.|+++||-=+.-.. .....+++.+.....|.+
T Consensus 115 ~~~IIf~DEIdki~~~~~~~~~~~~~~gv~~~LL~~~dg~~ 155 (309)
T d1ofha_ 115 QNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGST 155 (309)
T ss_dssp HHCEEEEECGGGGSCCSSCCSSHHHHHHHHHHHHHHHHCCE
T ss_pred CCCEEEEHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCE
T ss_conf 78568842464540301576412012579987528861988
|
| >d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Metallochaperone MeaB species: Methylobacterium extorquens [TaxId: 408]
Probab=90.72 E-value=0.082 Score=26.17 Aligned_cols=10 Identities=40% Similarity=0.554 Sum_probs=6.5
Q ss_pred ECCCCEEEEE
Q ss_conf 5299699998
Q 001438 407 IPAGKIVALV 416 (1077)
Q Consensus 407 i~~g~~~~iv 416 (1077)
...|..+|++
T Consensus 76 ~~~g~~vaVi 85 (323)
T d2qm8a1 76 TAAGHKVAVL 85 (323)
T ss_dssp HHTTCCEEEE
T ss_pred HHCCCCEEEE
T ss_conf 6368751344
|
| >d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=90.69 E-value=0.077 Score=26.40 Aligned_cols=23 Identities=30% Similarity=0.377 Sum_probs=20.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998399995899999996046
Q 001438 412 IVALVGGSGSGKSTVISLIERFY 434 (1077)
Q Consensus 412 ~~~ivG~~GsGKStl~~~l~~~~ 434 (1077)
.+.|.||+||||||+.+.|...|
T Consensus 2 ~I~i~G~pGsGKsT~a~~La~~~ 24 (181)
T d2cdna1 2 RVLLLGPPGAGKGTQAVKLAEKL 24 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 89998899999799999999998
|
| >d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Escherichia coli [TaxId: 562]
Probab=90.63 E-value=0.088 Score=25.94 Aligned_cols=31 Identities=32% Similarity=0.513 Sum_probs=23.2
Q ss_pred EEECCCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 8852996999983999958999999960467
Q 001438 405 LDIPAGKIVALVGGSGSGKSTVISLIERFYE 435 (1077)
Q Consensus 405 ~~i~~g~~~~ivG~~GsGKStl~~~l~~~~~ 435 (1077)
++-++...+++|||+|+||||.+.-|...+.
T Consensus 4 ~~~~~p~vi~lvGptGvGKTTTiAKLA~~~~ 34 (211)
T d2qy9a2 4 VEGKAPFVILMVGVNGVGKTTTIGKLARQFE 34 (211)
T ss_dssp CCSCTTEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCCCCCEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 7899997999989999998999999999999
|
| >d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=90.50 E-value=0.091 Score=25.83 Aligned_cols=23 Identities=39% Similarity=0.447 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998399995899999996046
Q 001438 412 IVALVGGSGSGKSTVISLIERFY 434 (1077)
Q Consensus 412 ~~~ivG~~GsGKStl~~~l~~~~ 434 (1077)
.+.++|++||||||+.+.|...+
T Consensus 3 ~IvliG~~G~GKSTig~~La~~l 25 (165)
T d2iyva1 3 KAVLVGLPGSGKSTIGRRLAKAL 25 (165)
T ss_dssp SEEEECSTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
T ss_conf 48998899998899999999984
|
| >d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor IF2/eIF5b, N-terminal (G) domain species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=90.48 E-value=0.11 Score=25.23 Aligned_cols=22 Identities=32% Similarity=0.513 Sum_probs=20.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999839999589999999604
Q 001438 412 IVALVGGSGSGKSTVISLIERF 433 (1077)
Q Consensus 412 ~~~ivG~~GsGKStl~~~l~~~ 433 (1077)
.+||+|++.+|||||++.|++.
T Consensus 7 ~IaIiGh~d~GKSTL~~~L~~~ 28 (227)
T d1g7sa4 7 IVSVLGHVDHGKTTLLDHIRGS 28 (227)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHHHH
T ss_conf 7999969985499999999823
|
| >d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: di-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.43 E-value=0.2 Score=23.28 Aligned_cols=21 Identities=33% Similarity=0.545 Sum_probs=18.5
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999983999958999999960
Q 001438 412 IVALVGGSGSGKSTVISLIER 432 (1077)
Q Consensus 412 ~~~ivG~~GsGKStl~~~l~~ 432 (1077)
+++++|.+|+|||||++-+.+
T Consensus 4 Ki~viG~~~vGKTsLi~r~~~ 24 (171)
T d2erxa1 4 RVAVFGAGGVGKSSLVLRFVK 24 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 899999899798999999970
|
| >d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=90.43 E-value=0.11 Score=25.14 Aligned_cols=26 Identities=27% Similarity=0.438 Sum_probs=23.0
Q ss_pred EECCCCEEEEECCCCCCHHHHHHHHH
Q ss_conf 85299699998399995899999996
Q 001438 406 DIPAGKIVALVGGSGSGKSTVISLIE 431 (1077)
Q Consensus 406 ~i~~g~~~~ivG~~GsGKStl~~~l~ 431 (1077)
-+++|+.+.|.|++||||||+..-++
T Consensus 32 Glp~G~~~li~G~pGsGKT~~~lq~~ 57 (254)
T d1pzna2 32 GIETQAITEVFGEFGSGKTQLAHTLA 57 (254)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHH
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHH
T ss_conf 95588799998589898899999999
|
| >d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Meiotic recombination protein DMC1/LIM15 homolog species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.39 E-value=0.12 Score=24.98 Aligned_cols=28 Identities=18% Similarity=0.152 Sum_probs=24.6
Q ss_pred EECCCCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 8529969999839999589999999604
Q 001438 406 DIPAGKIVALVGGSGSGKSTVISLIERF 433 (1077)
Q Consensus 406 ~i~~g~~~~ivG~~GsGKStl~~~l~~~ 433 (1077)
-+++|+.+.|.|++|||||++..-++..
T Consensus 33 Gip~G~~~~i~G~~GsGKT~lalq~~~~ 60 (258)
T d1v5wa_ 33 GIESMAITEAFGEFRTGKTQLSHTLCVT 60 (258)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 9768979999889988788999999999
|
| >d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein ypt7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.38 E-value=0.12 Score=24.94 Aligned_cols=21 Identities=29% Similarity=0.509 Sum_probs=18.7
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999983999958999999960
Q 001438 412 IVALVGGSGSGKSTVISLIER 432 (1077)
Q Consensus 412 ~~~ivG~~GsGKStl~~~l~~ 432 (1077)
+++++|++|+|||||++.+.+
T Consensus 4 Ki~~vG~~~vGKSsLi~~~~~ 24 (175)
T d1ky3a_ 4 KVIILGDSGVGKTSLMHRYVN 24 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHC
T ss_conf 999999999698999999970
|
| >d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Archaeal ATPase SSO1545 species: Sulfolobus solfataricus [TaxId: 2287]
Probab=90.36 E-value=0.15 Score=24.24 Aligned_cols=27 Identities=22% Similarity=0.271 Sum_probs=22.7
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 996999983999958999999960467
Q 001438 409 AGKIVALVGGSGSGKSTVISLIERFYE 435 (1077)
Q Consensus 409 ~g~~~~ivG~~GsGKStl~~~l~~~~~ 435 (1077)
.+..+.|+||.|+|||||++.++....
T Consensus 28 ~~~~i~i~G~~G~GKTsLl~~~~~~~~ 54 (283)
T d2fnaa2 28 RAPITLVLGLRRTGKSSIIKIGINELN 54 (283)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 598799986999829999999999779
|
| >d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Escherichia coli [TaxId: 562]
Probab=90.23 E-value=0.047 Score=27.98 Aligned_cols=25 Identities=32% Similarity=0.445 Sum_probs=21.7
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9699998399995899999996046
Q 001438 410 GKIVALVGGSGSGKSTVISLIERFY 434 (1077)
Q Consensus 410 g~~~~ivG~~GsGKStl~~~l~~~~ 434 (1077)
.-.++++|++++|||||++.|.+.-
T Consensus 16 ~~~I~lvG~~NvGKSSL~n~L~~~~ 40 (188)
T d1puia_ 16 GIEVAFAGRSNAGKSSALNTLTNQK 40 (188)
T ss_dssp SEEEEEEECTTSSHHHHHTTTCCC-
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 9789998899998999999985898
|
| >d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6, N-domain species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=90.22 E-value=0.17 Score=23.75 Aligned_cols=31 Identities=19% Similarity=0.347 Sum_probs=25.3
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCC
Q ss_conf 9969999839999589999999604679841
Q 001438 409 AGKIVALVGGSGSGKSTVISLIERFYEPLSG 439 (1077)
Q Consensus 409 ~g~~~~ivG~~GsGKStl~~~l~~~~~~~~G 439 (1077)
+...+.|.||+|+||||+++.+...+....+
T Consensus 42 ~~~~lll~GppGtGKT~l~~~l~~~l~~~~~ 72 (276)
T d1fnna2 42 HYPRATLLGRPGTGKTVTLRKLWELYKDKTT 72 (276)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHHTTSCC
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHHHHCCCC
T ss_conf 8881688898999899999999999754468
|
| >d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Papillomavirus large T antigen helicase domain species: Simian virus 40 [TaxId: 10633]
Probab=90.20 E-value=0.11 Score=25.27 Aligned_cols=30 Identities=23% Similarity=0.358 Sum_probs=26.7
Q ss_pred EECCCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 852996999983999958999999960467
Q 001438 406 DIPAGKIVALVGGSGSGKSTVISLIERFYE 435 (1077)
Q Consensus 406 ~i~~g~~~~ivG~~GsGKStl~~~l~~~~~ 435 (1077)
.++++..+.++||+|+|||++.+.+.++..
T Consensus 150 ~~~~~~~~~~~g~~~~gk~~~~~~~~~~~~ 179 (362)
T d1svma_ 150 NIPKKRYWLFKGPIDSGKTTLAAALLELCG 179 (362)
T ss_dssp CCTTCCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 899767699989999888999999999859
|
| >d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=90.13 E-value=0.14 Score=24.42 Aligned_cols=26 Identities=27% Similarity=0.459 Sum_probs=22.5
Q ss_pred EECCCCEEEEECCCCCCHHHHHHHHH
Q ss_conf 85299699998399995899999996
Q 001438 406 DIPAGKIVALVGGSGSGKSTVISLIE 431 (1077)
Q Consensus 406 ~i~~g~~~~ivG~~GsGKStl~~~l~ 431 (1077)
-+++|+.+.|.|++|+|||+++.-++
T Consensus 22 Gi~~G~~~~I~G~~G~GKT~la~~~~ 47 (242)
T d1tf7a1 22 GLPIGRSTLVSGTSGTGKTLFSIQFL 47 (242)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHH
T ss_pred CCCCCEEEEEEECCCCCHHHHHHHHH
T ss_conf 99698399999479999999999999
|
| >d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein Ygr205W species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.10 E-value=0.12 Score=24.99 Aligned_cols=23 Identities=30% Similarity=0.333 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998399995899999996046
Q 001438 412 IVALVGGSGSGKSTVISLIERFY 434 (1077)
Q Consensus 412 ~~~ivG~~GsGKStl~~~l~~~~ 434 (1077)
.++|-|+.||||||+...|...+
T Consensus 29 iIGi~G~qGSGKSTl~~~l~~~L 51 (286)
T d1odfa_ 29 FIFFSGPQGSGKSFTSIQIYNHL 51 (286)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99837998788999999999999
|
| >d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Lactobacillus casei [TaxId: 1582]
Probab=90.03 E-value=0.21 Score=23.16 Aligned_cols=33 Identities=30% Similarity=0.346 Sum_probs=25.1
Q ss_pred CCCCEEEEECCCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 2000038852996999983999958999999960
Q 001438 399 IFDKFCLDIPAGKIVALVGGSGSGKSTVISLIER 432 (1077)
Q Consensus 399 ~l~~~~~~i~~g~~~~ivG~~GsGKStl~~~l~~ 432 (1077)
.++...+.+ .|.-+.+.|+||+||||+...+..
T Consensus 4 ~lH~~~v~~-~g~gvl~~G~sG~GKStlal~l~~ 36 (176)
T d1kkma_ 4 SMHGVLVDI-YGLGVLITGDSGVGKSETALELVQ 36 (176)
T ss_dssp EEEEEEEEE-TTEEEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEEEEE-CCEEEEEEECCCCCHHHHHHHHHH
T ss_conf 289999999-999999980899998999999998
|
| >d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Escherichia coli [TaxId: 562]
Probab=89.97 E-value=0.12 Score=25.06 Aligned_cols=21 Identities=62% Similarity=0.817 Sum_probs=18.8
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999983999958999999960
Q 001438 412 IVALVGGSGSGKSTVISLIER 432 (1077)
Q Consensus 412 ~~~ivG~~GsGKStl~~~l~~ 432 (1077)
.+||+|..||||||+.+.+..
T Consensus 5 iIgitG~igSGKStv~~~l~~ 25 (208)
T d1vhta_ 5 IVALTGGIGSGKSTVANAFAD 25 (208)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999789886889999999998
|
| >d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=89.93 E-value=0.097 Score=25.63 Aligned_cols=29 Identities=24% Similarity=0.389 Sum_probs=23.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEC
Q ss_conf 999983999958999999960467984179999
Q 001438 412 IVALVGGSGSGKSTVISLIERFYEPLSGEILLD 444 (1077)
Q Consensus 412 ~~~ivG~~GsGKStl~~~l~~~~~~~~G~i~~~ 444 (1077)
.+.+.||.||||||+.+.|...+ |...++
T Consensus 4 rIvl~G~pGSGKtT~a~~La~~~----g~~~i~ 32 (180)
T d1akya1 4 RMVLIGPPGAGKGTQAPNLQERF----HAAHLA 32 (180)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH----CCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHH----CCCEEE
T ss_conf 99998999999899999999996----994583
|
| >d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Mycoplasma pneumoniae [TaxId: 2104]
Probab=89.78 E-value=0.22 Score=23.05 Aligned_cols=34 Identities=32% Similarity=0.310 Sum_probs=27.0
Q ss_pred CCCCCEEEEECCCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 42000038852996999983999958999999960
Q 001438 398 AIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIER 432 (1077)
Q Consensus 398 ~~l~~~~~~i~~g~~~~ivG~~GsGKStl~~~l~~ 432 (1077)
..++...+.+ .|.-+.+.|+||+||||+...+..
T Consensus 4 ~~~H~~~v~~-~g~gvli~G~sG~GKS~lal~l~~ 37 (177)
T d1knxa2 4 AQIHGVLLEV-FGVGVLLTGRSGIGKSECALDLIN 37 (177)
T ss_dssp EEEEEEEEEE-TTEEEEEEESSSSSHHHHHHHHHT
T ss_pred CEEEEEEEEE-CCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 3178999999-999999981899998999999998
|
| >d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Escherichia coli [TaxId: 562]
Probab=89.74 E-value=0.12 Score=24.87 Aligned_cols=41 Identities=24% Similarity=0.407 Sum_probs=31.8
Q ss_pred EECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCE-EEECCE
Q ss_conf 85299699998399995899999996046798417-999995
Q 001438 406 DIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGE-ILLDGN 446 (1077)
Q Consensus 406 ~i~~g~~~~ivG~~GsGKStl~~~l~~~~~~~~G~-i~~~g~ 446 (1077)
-+++|..+-+.||+||||||++.-+........|. +++|..
T Consensus 50 Gi~~g~itei~G~~gsGKTtl~l~~~~~~q~~g~~~vyidtE 91 (263)
T d1u94a1 50 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAE 91 (263)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred CCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEECCC
T ss_conf 966735899805777478999999999987089879998654
|
| >d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=89.72 E-value=0.14 Score=24.38 Aligned_cols=29 Identities=17% Similarity=0.258 Sum_probs=24.7
Q ss_pred EECCCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 85299699998399995899999996046
Q 001438 406 DIPAGKIVALVGGSGSGKSTVISLIERFY 434 (1077)
Q Consensus 406 ~i~~g~~~~ivG~~GsGKStl~~~l~~~~ 434 (1077)
-+++|+.+.|.|++|+|||+++.-+.-..
T Consensus 30 Gl~~G~l~~i~G~~G~GKT~~~l~~a~~~ 58 (258)
T d2i1qa2 30 GLESQSVTEFAGVFGSGKTQIMHQSCVNL 58 (258)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCCCEEEEEEECCCCCHHHHHHHHHHHH
T ss_conf 86288599999179999899999999999
|
| >d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Archaeal ATPase SSO1545 species: Sulfolobus solfataricus [TaxId: 2287]
Probab=89.65 E-value=0.14 Score=24.56 Aligned_cols=11 Identities=45% Similarity=0.715 Sum_probs=4.8
Q ss_pred CCCEEEEECCC
Q ss_conf 99899982768
Q 001438 538 NPSILLLDEAT 548 (1077)
Q Consensus 538 ~~~illlDe~t 548 (1077)
++.++++||.-
T Consensus 136 ~~~~i~id~~~ 146 (283)
T d2fnaa2 136 DNVIIVLDEAQ 146 (283)
T ss_dssp SCEEEEEETGG
T ss_pred CCCCCCCCHHH
T ss_conf 55545664055
|
| >d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.62 E-value=0.26 Score=22.46 Aligned_cols=21 Identities=33% Similarity=0.542 Sum_probs=18.4
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999983999958999999960
Q 001438 412 IVALVGGSGSGKSTVISLIER 432 (1077)
Q Consensus 412 ~~~ivG~~GsGKStl~~~l~~ 432 (1077)
+++++|.+|+|||||++-+..
T Consensus 7 Ki~lvG~~~vGKTsLi~r~~~ 27 (171)
T d2erya1 7 RLVVVGGGGVGKSALTIQFIQ 27 (171)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 899999999799999999973
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Probab=89.61 E-value=0.14 Score=24.45 Aligned_cols=26 Identities=23% Similarity=0.284 Sum_probs=21.8
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 29969999839999589999999604
Q 001438 408 PAGKIVALVGGSGSGKSTVISLIERF 433 (1077)
Q Consensus 408 ~~g~~~~ivG~~GsGKStl~~~l~~~ 433 (1077)
++.-+++++|.+|||||||++.+.+.
T Consensus 13 ~k~~kI~vvG~~~~GKSsLi~rl~~~ 38 (177)
T d1zj6a1 13 HQEHKVIIVGLDNAGKTTILYQFSMN 38 (177)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHCC
T ss_conf 98579999999998989999999668
|
| >d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermotoga maritima [TaxId: 2336]
Probab=89.50 E-value=0.092 Score=25.80 Aligned_cols=29 Identities=21% Similarity=0.424 Sum_probs=21.8
Q ss_pred EECCCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 85299699998399995899999996046
Q 001438 406 DIPAGKIVALVGGSGSGKSTVISLIERFY 434 (1077)
Q Consensus 406 ~i~~g~~~~ivG~~GsGKStl~~~l~~~~ 434 (1077)
.-++...+++|||+|+||||.+.-|...+
T Consensus 7 ~~~~p~vi~lvGptGvGKTTTiAKLAa~~ 35 (213)
T d1vmaa2 7 PPEPPFVIMVVGVNGTGKTTSCGKLAKMF 35 (213)
T ss_dssp CSSSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99999899998999998899999999999
|
| >d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Thermus thermophilus [TaxId: 274]
Probab=89.45 E-value=0.16 Score=24.06 Aligned_cols=26 Identities=31% Similarity=0.318 Sum_probs=22.0
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 96999983999958999999960467
Q 001438 410 GKIVALVGGSGSGKSTVISLIERFYE 435 (1077)
Q Consensus 410 g~~~~ivG~~GsGKStl~~~l~~~~~ 435 (1077)
..-+-+.||+|||||++++.+.++..
T Consensus 42 ~~giLl~GppGtGKT~la~aia~~~~ 67 (247)
T d1ixza_ 42 PKGVLLVGPPGVGKTHLARAVAGEAR 67 (247)
T ss_dssp CSEEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 86488766898883599999998739
|
| >d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Phosphoribulokinase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=89.33 E-value=0.068 Score=26.80 Aligned_cols=27 Identities=30% Similarity=0.586 Sum_probs=22.4
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 996999983999958999999960467
Q 001438 409 AGKIVALVGGSGSGKSTVISLIERFYE 435 (1077)
Q Consensus 409 ~g~~~~ivG~~GsGKStl~~~l~~~~~ 435 (1077)
+.-.+||.|+|||||||+.+.+...+.
T Consensus 3 k~pIIgIaG~SGSGKTTva~~l~~i~~ 29 (288)
T d1a7ja_ 3 KHPIISVTGSSGAGTSTVKHTFDQIFR 29 (288)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 888999989997809999999999971
|
| >d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Dictyostelium discoideum [TaxId: 44689]
Probab=89.21 E-value=0.15 Score=24.23 Aligned_cols=26 Identities=35% Similarity=0.383 Sum_probs=22.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC-CC
Q ss_conf 999983999958999999960467-98
Q 001438 412 IVALVGGSGSGKSTVISLIERFYE-PL 437 (1077)
Q Consensus 412 ~~~ivG~~GsGKStl~~~l~~~~~-~~ 437 (1077)
.+++||...||||||+++|+|.-- |.
T Consensus 26 ~ivVvG~~ssGKSSliNaLlG~~~lP~ 52 (306)
T d1jwyb_ 26 QIVVVGSQSSGKSSVLENIVGRDFLPR 52 (306)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSCCCCC
T ss_pred EEEEEECCCCCHHHHHHHHHCCCCCCC
T ss_conf 599981898979999999968997887
|
| >d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Meiotic recombination protein DMC1/LIM15 homolog species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.13 E-value=0.15 Score=24.22 Aligned_cols=12 Identities=8% Similarity=0.044 Sum_probs=6.1
Q ss_pred CCEEEEECCCCH
Q ss_conf 973999825923
Q 001438 569 GRTTVVVAHRLS 580 (1077)
Q Consensus 569 ~~t~i~itH~~~ 580 (1077)
+.+++++.|...
T Consensus 179 ~~~~~~~~~~~~ 190 (258)
T d1v5wa_ 179 NVAVFVTNQMTA 190 (258)
T ss_dssp TCEEEEEECC--
T ss_pred CCEEEEEEEEEE
T ss_conf 977999514750
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=89.10 E-value=0.15 Score=24.27 Aligned_cols=21 Identities=19% Similarity=0.382 Sum_probs=18.6
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999983999958999999960
Q 001438 412 IVALVGGSGSGKSTVISLIER 432 (1077)
Q Consensus 412 ~~~ivG~~GsGKStl~~~l~~ 432 (1077)
+++++|++|+|||||++.+.+
T Consensus 7 Ki~vvG~~~vGKTsLi~~l~~ 27 (169)
T d3raba_ 7 KILIIGNSSVGKTSFLFRYAD 27 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHC
T ss_conf 999999999198999999973
|
| >d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=89.04 E-value=0.13 Score=24.69 Aligned_cols=12 Identities=33% Similarity=0.479 Sum_probs=6.4
Q ss_pred CCCEEEEECCCC
Q ss_conf 998999827688
Q 001438 538 NPSILLLDEATS 549 (1077)
Q Consensus 538 ~~~illlDe~ts 549 (1077)
.++++++|....
T Consensus 136 ~~~~~viDs~~~ 147 (254)
T d1pzna2 136 PVKLLIVDSLTS 147 (254)
T ss_dssp CEEEEEEETSST
T ss_pred CCEEEEECCHHH
T ss_conf 842686031121
|
| >d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.91 E-value=0.11 Score=25.12 Aligned_cols=25 Identities=28% Similarity=0.272 Sum_probs=21.8
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9699998399995899999996046
Q 001438 410 GKIVALVGGSGSGKSTVISLIERFY 434 (1077)
Q Consensus 410 g~~~~ivG~~GsGKStl~~~l~~~~ 434 (1077)
=..|+|+||.++|||||++.|.|..
T Consensus 32 v~vvsi~G~~~sGKS~llN~l~~~~ 56 (277)
T d1f5na2 32 MVVVAIVGLYRTGKSYLMNKLAGKK 56 (277)
T ss_dssp EEEEEEEEBTTSSHHHHHHHHTTCS
T ss_pred EEEEEEECCCCCCHHHHHHHHCCCC
T ss_conf 7999988999997999999980998
|
| >d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: YjeE-like domain: Hypothetical protein HI0065 species: Haemophilus influenzae [TaxId: 727]
Probab=88.87 E-value=0.2 Score=23.34 Aligned_cols=31 Identities=23% Similarity=0.205 Sum_probs=26.8
Q ss_pred EECCCCEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 8529969999839999589999999604679
Q 001438 406 DIPAGKIVALVGGSGSGKSTVISLIERFYEP 436 (1077)
Q Consensus 406 ~i~~g~~~~ivG~~GsGKStl~~~l~~~~~~ 436 (1077)
..++|..+.+.|+-|+||||+++.+.+-+..
T Consensus 29 ~~~~g~ii~L~G~LGaGKTtfvr~~~~~lg~ 59 (158)
T d1htwa_ 29 HTEKAIMVYLNGDLGAGKTTLTRGMLQGIGH 59 (158)
T ss_dssp CCSSCEEEEEECSTTSSHHHHHHHHHHHTTC
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHCCC
T ss_conf 5799829999668776588999998764223
|
| >d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=88.72 E-value=0.12 Score=24.92 Aligned_cols=25 Identities=24% Similarity=0.274 Sum_probs=21.6
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 6999983999958999999960467
Q 001438 411 KIVALVGGSGSGKSTVISLIERFYE 435 (1077)
Q Consensus 411 ~~~~ivG~~GsGKStl~~~l~~~~~ 435 (1077)
..+-+.||+|+||||+++++...+.
T Consensus 46 ~~lll~Gp~G~GKTtla~~iak~l~ 70 (231)
T d1iqpa2 46 PHLLFAGPPGVGKTTAALALARELF 70 (231)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 7699978999748799999999987
|
| >d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermus thermophilus [TaxId: 274]
Probab=88.65 E-value=0.13 Score=24.73 Aligned_cols=24 Identities=29% Similarity=0.400 Sum_probs=20.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999983999958999999960467
Q 001438 412 IVALVGGSGSGKSTVISLIERFYE 435 (1077)
Q Consensus 412 ~~~ivG~~GsGKStl~~~l~~~~~ 435 (1077)
-+-+.||+|+||||+++++.+++.
T Consensus 37 ~~Ll~GPpG~GKTtla~~la~~~~ 60 (239)
T d1ixsb2 37 HLLLFGPPGLGKTTLAHVIAHELG 60 (239)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 389889799878889999999849
|
| >d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=88.51 E-value=0.18 Score=23.73 Aligned_cols=27 Identities=19% Similarity=0.284 Sum_probs=22.4
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 996999983999958999999960467
Q 001438 409 AGKIVALVGGSGSGKSTVISLIERFYE 435 (1077)
Q Consensus 409 ~g~~~~ivG~~GsGKStl~~~l~~~~~ 435 (1077)
+..-+-+.||+|||||++++.+.++..
T Consensus 37 ~~~giLL~GppGtGKT~l~~ala~~~~ 63 (258)
T d1e32a2 37 PPRGILLYGPPGTGKTLIARAVANETG 63 (258)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHC
T ss_conf 886468766998883089999998748
|
| >d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Gene 4 protein (g4p, DNA primase), helicase domain species: Bacteriophage T7 [TaxId: 10760]
Probab=88.42 E-value=0.12 Score=24.88 Aligned_cols=43 Identities=19% Similarity=0.222 Sum_probs=22.7
Q ss_pred CCCCCEEEEECCCCCCCHH--------HHHHHHHHHHHHH--CCCEEEEECCCC
Q ss_conf 1399899982768899989--------8999999999870--797399982592
Q 001438 536 VKNPSILLLDEATSALDAE--------SENSVQEALDRVM--VGRTTVVVAHRL 579 (1077)
Q Consensus 536 ~~~~~illlDe~ts~lD~~--------~~~~i~~~i~~~~--~~~t~i~itH~~ 579 (1077)
-.+|+++++|-. ..++.. ....+...++.+. .+.++++++|--
T Consensus 145 ~~~~~~vvID~l-~~l~~~~~~~~~~~~~~~~~~~l~~lA~~~~i~vi~~~q~~ 197 (277)
T d1cr2a_ 145 GLGCDVIILDHI-SIVVSASGESDERKMIDNLMTKLKGFAKSTGVVLVVICHLK 197 (277)
T ss_dssp TTCCSEEEEEEE-EC----------CHHHHHHHHHHHHHHHHHCCEEEEEEECC
T ss_pred CCCCCEEEECCC-CCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEECCCC
T ss_conf 367625997054-21203465443067789999999997650165520310356
|
| >d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=88.42 E-value=0.17 Score=23.90 Aligned_cols=23 Identities=35% Similarity=0.475 Sum_probs=21.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998399995899999996046
Q 001438 412 IVALVGGSGSGKSTVISLIERFY 434 (1077)
Q Consensus 412 ~~~ivG~~GsGKStl~~~l~~~~ 434 (1077)
.++++|...||||||+++|+|.-
T Consensus 28 ~ivvvG~~SsGKSsliNaLlg~~ 50 (299)
T d2akab1 28 QIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 69997689897999999996898
|
| >d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=88.37 E-value=0.13 Score=24.73 Aligned_cols=22 Identities=23% Similarity=0.452 Sum_probs=20.3
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9998399995899999996046
Q 001438 413 VALVGGSGSGKSTVISLIERFY 434 (1077)
Q Consensus 413 ~~ivG~~GsGKStl~~~l~~~~ 434 (1077)
+.+.||+|+||||+++++.+++
T Consensus 36 lll~Gp~G~GKTtl~~~i~~~l 57 (237)
T d1sxjd2 36 MLFYGPPGTGKTSTILALTKEL 57 (237)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 9998999998499999999997
|
| >d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab7 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=88.36 E-value=0.18 Score=23.60 Aligned_cols=21 Identities=29% Similarity=0.536 Sum_probs=18.5
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999983999958999999960
Q 001438 412 IVALVGGSGSGKSTVISLIER 432 (1077)
Q Consensus 412 ~~~ivG~~GsGKStl~~~l~~ 432 (1077)
+++++|.+|+|||||++-+.+
T Consensus 4 Kv~vvG~~~vGKSSLi~~l~~ 24 (184)
T d1vg8a_ 4 KVIILGDSGVGKTSLMNQYVN 24 (184)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999198999999971
|
| >d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab11b species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.35 E-value=0.18 Score=23.66 Aligned_cols=21 Identities=48% Similarity=0.725 Sum_probs=18.6
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999983999958999999960
Q 001438 412 IVALVGGSGSGKSTVISLIER 432 (1077)
Q Consensus 412 ~~~ivG~~GsGKStl~~~l~~ 432 (1077)
+++++|++|+|||||++-+.+
T Consensus 6 Ki~vvG~~~vGKTsLi~~~~~ 26 (175)
T d2f9la1 6 KVVLIGDSGVGKSNLLSRFTR 26 (175)
T ss_dssp EEEEESSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999098999999982
|
| >d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.32 E-value=0.36 Score=21.44 Aligned_cols=21 Identities=19% Similarity=0.384 Sum_probs=18.9
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999983999958999999960
Q 001438 412 IVALVGGSGSGKSTVISLIER 432 (1077)
Q Consensus 412 ~~~ivG~~GsGKStl~~~l~~ 432 (1077)
+++++|..|+|||||++-+.+
T Consensus 2 Kv~vvG~~~vGKTsLi~r~~~ 22 (164)
T d1yzqa1 2 KLVFLGEQSVGKTSLITRFMY 22 (164)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 899999899098999999984
|
| >d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab9a species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.19 E-value=0.32 Score=21.76 Aligned_cols=21 Identities=33% Similarity=0.520 Sum_probs=18.2
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999983999958999999960
Q 001438 412 IVALVGGSGSGKSTVISLIER 432 (1077)
Q Consensus 412 ~~~ivG~~GsGKStl~~~l~~ 432 (1077)
+++++|++|+|||||++-+.+
T Consensus 8 KI~vvG~~~vGKSSli~~~~~ 28 (174)
T d1wmsa_ 8 KVILLGDGGVGKSSLMNRYVT 28 (174)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999799999999984
|
| >d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-like estrogen-regulated growth inhibitor, RERG species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.18 E-value=0.27 Score=22.38 Aligned_cols=21 Identities=29% Similarity=0.471 Sum_probs=18.6
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999983999958999999960
Q 001438 412 IVALVGGSGSGKSTVISLIER 432 (1077)
Q Consensus 412 ~~~ivG~~GsGKStl~~~l~~ 432 (1077)
++.++|++|+|||||++-+..
T Consensus 4 Ki~lvG~~~vGKTsli~r~~~ 24 (168)
T d2atva1 4 KLAIFGRAGVGKSALVVRFLT 24 (168)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999899789999999973
|
| >d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus, EF-G-2 [TaxId: 274]
Probab=88.16 E-value=0.18 Score=23.73 Aligned_cols=51 Identities=24% Similarity=0.276 Sum_probs=32.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC--CCCCCEEEECCEECCCCCHHHHHHHEEEE
Q ss_conf 99998399995899999996046--79841799999527999978874204688
Q 001438 412 IVALVGGSGSGKSTVISLIERFY--EPLSGEILLDGNNIKGLDLKWLRQQIGLV 463 (1077)
Q Consensus 412 ~~~ivG~~GsGKStl~~~l~~~~--~~~~G~i~~~g~~~~~~~~~~~r~~i~~v 463 (1077)
.++|+|+.|+|||||+-.|+..- ....|++. +|..+.+....+..+.+++-
T Consensus 4 Nv~iiGh~~~GKTtL~e~ll~~~g~~~~~g~v~-~g~~~~D~~~~E~~r~~ti~ 56 (267)
T d2dy1a2 4 TVALVGHAGSGKTTLTEALLYKTGAKERRGRVE-EGTTTTDYTPEAKLHRTTVR 56 (267)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGG-GTCCSSCCSHHHHHTTSCCS
T ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCHHHCCCH-HCCCCCCCHHHHHHHCCEEE
T ss_conf 999994889809999999999709755306622-22113562698887387687
|
| >d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Archaeon Acidianus ambivalens [TaxId: 2283]
Probab=88.15 E-value=0.12 Score=24.90 Aligned_cols=28 Identities=32% Similarity=0.564 Sum_probs=21.9
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 2996999983999958999999960467
Q 001438 408 PAGKIVALVGGSGSGKSTVISLIERFYE 435 (1077)
Q Consensus 408 ~~g~~~~ivG~~GsGKStl~~~l~~~~~ 435 (1077)
++...+++|||+|+||||.+.-|...+.
T Consensus 10 k~p~vi~lvGptGvGKTTTiAKLA~~~~ 37 (211)
T d1j8yf2 10 KIPYVIMLVGVQGTGKATTAGKLAYFYK 37 (211)
T ss_dssp SSSEEEEEECSCCC----HHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 9998999989999998999999999999
|
| >d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=88.15 E-value=0.15 Score=24.21 Aligned_cols=24 Identities=25% Similarity=0.570 Sum_probs=21.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999983999958999999960467
Q 001438 412 IVALVGGSGSGKSTVISLIERFYE 435 (1077)
Q Consensus 412 ~~~ivG~~GsGKStl~~~l~~~~~ 435 (1077)
+++|-|.-||||||+++.|...+.
T Consensus 2 lI~ieG~dGsGKST~~~~L~~~l~ 25 (208)
T d1gsia_ 2 LIAIEGVDGAGKRTLVEKLSGAFR 25 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 899989987899999999999998
|
| >d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Probab=88.11 E-value=0.18 Score=23.68 Aligned_cols=23 Identities=22% Similarity=0.449 Sum_probs=20.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998399995899999996046
Q 001438 412 IVALVGGSGSGKSTVISLIERFY 434 (1077)
Q Consensus 412 ~~~ivG~~GsGKStl~~~l~~~~ 434 (1077)
.+||+|++.+|||||++.|+|..
T Consensus 7 nIaiiGhvd~GKSTL~~~L~g~~ 29 (195)
T d1kk1a3 7 NIGMVGHVDHGKTTLTKALTGVW 29 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHTCC
T ss_pred EEEEEECCCCCHHHHHHHHHHHH
T ss_conf 99999345884999999997034
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Probab=88.06 E-value=0.16 Score=23.95 Aligned_cols=21 Identities=24% Similarity=0.461 Sum_probs=19.0
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999983999958999999960
Q 001438 412 IVALVGGSGSGKSTVISLIER 432 (1077)
Q Consensus 412 ~~~ivG~~GsGKStl~~~l~~ 432 (1077)
+++++|++|+|||||++.+.+
T Consensus 18 kI~vvG~~~vGKSsLi~~l~~ 38 (176)
T d1fzqa_ 18 RILLLGLDNAGKTTLLKQLAS 38 (176)
T ss_dssp EEEEEESTTSSHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHC
T ss_conf 999999999899999999964
|
| >d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=88.01 E-value=0.22 Score=22.97 Aligned_cols=14 Identities=14% Similarity=0.176 Sum_probs=6.5
Q ss_pred HHHHCHHHHHHHHH
Q ss_conf 87520999999977
Q 001438 802 RLESDATLLRTIVV 815 (1077)
Q Consensus 802 R~s~D~~~i~~~l~ 815 (1077)
.+.=|.+.+++.+.
T Consensus 417 ~v~Id~~~v~~~l~ 430 (443)
T d1g41a_ 417 TVNIDAAYVADALG 430 (443)
T ss_dssp EEEECHHHHHHHHT
T ss_pred EEEECHHHHHHHHH
T ss_conf 89987999975520
|
| >d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab23 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=88.00 E-value=0.19 Score=23.40 Aligned_cols=21 Identities=29% Similarity=0.442 Sum_probs=18.2
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999983999958999999960
Q 001438 412 IVALVGGSGSGKSTVISLIER 432 (1077)
Q Consensus 412 ~~~ivG~~GsGKStl~~~l~~ 432 (1077)
+++++|++|+|||||++-+.+
T Consensus 4 Kv~liG~~~vGKSsLi~rl~~ 24 (164)
T d1z2aa1 4 KMVVVGNGAVGKSSMIQRYCK 24 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999899598999999982
|
| >d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: TrmE GTPase domain species: Thermotoga maritima [TaxId: 2336]
Probab=87.94 E-value=0.041 Score=28.38 Aligned_cols=22 Identities=27% Similarity=0.380 Sum_probs=20.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999839999589999999604
Q 001438 412 IVALVGGSGSGKSTVISLIERF 433 (1077)
Q Consensus 412 ~~~ivG~~GsGKStl~~~l~~~ 433 (1077)
+++++|++++|||||++.|.|.
T Consensus 2 kI~liG~~n~GKSSLin~l~g~ 23 (160)
T d1xzpa2 2 RMVIVGKPNVGKSTLLNRLLNE 23 (160)
T ss_dssp EEEEECCHHHHTCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 8999999999999999999589
|
| >d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab27b species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.94 E-value=0.21 Score=23.15 Aligned_cols=21 Identities=29% Similarity=0.400 Sum_probs=18.7
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999983999958999999960
Q 001438 412 IVALVGGSGSGKSTVISLIER 432 (1077)
Q Consensus 412 ~~~ivG~~GsGKStl~~~l~~ 432 (1077)
+++++|++|+|||||++-+.+
T Consensus 7 Ki~ivG~~~vGKTsLi~~l~~ 27 (186)
T d2f7sa1 7 KLLALGDSGVGKTTFLYRYTD 27 (186)
T ss_dssp EEEEESCTTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHC
T ss_conf 999999999198999999961
|
| >d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Centaurin gamma 1, G domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.93 E-value=0.48 Score=20.51 Aligned_cols=22 Identities=27% Similarity=0.338 Sum_probs=18.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999839999589999999604
Q 001438 412 IVALVGGSGSGKSTVISLIERF 433 (1077)
Q Consensus 412 ~~~ivG~~GsGKStl~~~l~~~ 433 (1077)
+++++|.+|+|||||++-+.+.
T Consensus 7 ki~vlG~~~vGKTsLi~~~~~~ 28 (175)
T d2bmja1 7 RLGVLGDARSGKSSLIHRFLTG 28 (175)
T ss_dssp EEEEECCTTTTHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999998997899999999719
|
| >d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=87.85 E-value=0.16 Score=24.07 Aligned_cols=26 Identities=27% Similarity=0.181 Sum_probs=21.8
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 96999983999958999999960467
Q 001438 410 GKIVALVGGSGSGKSTVISLIERFYE 435 (1077)
Q Consensus 410 g~~~~ivG~~GsGKStl~~~l~~~~~ 435 (1077)
...+-+.||+|||||++++.+..+..
T Consensus 40 ~~~vLL~GppGtGKT~la~alA~~~~ 65 (246)
T d1d2na_ 40 LVSVLLEGPPHSGKTALAAKIAEESN 65 (246)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHCCC
T ss_conf 80799889699988999999862010
|
| >d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: cH-p21 Ras protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.82 E-value=0.26 Score=22.48 Aligned_cols=22 Identities=27% Similarity=0.410 Sum_probs=19.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999839999589999999604
Q 001438 412 IVALVGGSGSGKSTVISLIERF 433 (1077)
Q Consensus 412 ~~~ivG~~GsGKStl~~~l~~~ 433 (1077)
+++++|++|+|||||++-+.+-
T Consensus 5 Ki~viG~~~vGKTsli~~l~~~ 26 (166)
T d1ctqa_ 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999997998999999999809
|
| >d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxynucleoside monophosphate kinase species: Bacteriophage T4 [TaxId: 10665]
Probab=87.73 E-value=0.19 Score=23.45 Aligned_cols=23 Identities=35% Similarity=0.401 Sum_probs=20.1
Q ss_pred CEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 69999839999589999999604
Q 001438 411 KIVALVGGSGSGKSTVISLIERF 433 (1077)
Q Consensus 411 ~~~~ivG~~GsGKStl~~~l~~~ 433 (1077)
..+||.|+.||||||+.+.|...
T Consensus 2 ~iIgiTG~igSGKsTva~~l~e~ 24 (241)
T d1deka_ 2 KLIFLSGVKRSGKDTTADFIMSN 24 (241)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHH
T ss_conf 89999799998899999999986
|
| >d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab2b species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.69 E-value=0.21 Score=23.18 Aligned_cols=22 Identities=23% Similarity=0.386 Sum_probs=18.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999839999589999999604
Q 001438 412 IVALVGGSGSGKSTVISLIERF 433 (1077)
Q Consensus 412 ~~~ivG~~GsGKStl~~~l~~~ 433 (1077)
++.++|++|+|||||++-+.+-
T Consensus 5 KivvvG~~~vGKTsli~r~~~~ 26 (173)
T d2a5ja1 5 KYIIIGDTGVGKSCLLLQFTDK 26 (173)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999999993999999999629
|
| >d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein RheB species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.60 E-value=0.27 Score=22.29 Aligned_cols=22 Identities=23% Similarity=0.354 Sum_probs=19.3
Q ss_pred CEEEEECCCCCCHHHHHHHHHC
Q ss_conf 6999983999958999999960
Q 001438 411 KIVALVGGSGSGKSTVISLIER 432 (1077)
Q Consensus 411 ~~~~ivG~~GsGKStl~~~l~~ 432 (1077)
-+++++|++|+|||||++.+.+
T Consensus 5 ~Kv~liG~~~vGKTsLl~~~~~ 26 (167)
T d1xtqa1 5 RKIAILGYRSVGKSSLTIQFVE 26 (167)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
T ss_conf 3899999899298999999971
|
| >d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of beta subunit of F1 ATP synthase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=87.59 E-value=0.24 Score=22.73 Aligned_cols=36 Identities=25% Similarity=0.420 Sum_probs=27.9
Q ss_pred CCCCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 2000038852996999983999958999999960467
Q 001438 399 IFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYE 435 (1077)
Q Consensus 399 ~l~~~~~~i~~g~~~~ivG~~GsGKStl~~~l~~~~~ 435 (1077)
+++.+ +.+-+|++.+|+|++|+|||+|+.-+..-..
T Consensus 58 aID~l-~pigkGQr~~If~~~g~GKt~l~~~i~~~~~ 93 (276)
T d2jdid3 58 VVDLL-APYAKGGKIGLFGGAGVGKTVLIMELINNVA 93 (276)
T ss_dssp HHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred EEEEE-CCCCCCCEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 03102-5636788777667999898999999999887
|
| >d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein RalA species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]
Probab=87.51 E-value=0.41 Score=20.96 Aligned_cols=21 Identities=33% Similarity=0.430 Sum_probs=18.7
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999983999958999999960
Q 001438 412 IVALVGGSGSGKSTVISLIER 432 (1077)
Q Consensus 412 ~~~ivG~~GsGKStl~~~l~~ 432 (1077)
++.++|..|+|||||++-+..
T Consensus 6 KivlvG~~~vGKTsli~~~~~ 26 (168)
T d1u8za_ 6 KVIMVGSGGVGKSALTLQFMY 26 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999899588999999972
|
| >d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap2a species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.46 E-value=0.3 Score=21.98 Aligned_cols=22 Identities=27% Similarity=0.348 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999839999589999999604
Q 001438 412 IVALVGGSGSGKSTVISLIERF 433 (1077)
Q Consensus 412 ~~~ivG~~GsGKStl~~~l~~~ 433 (1077)
+++++|.+|+|||||++-+.+-
T Consensus 5 Ki~lvG~~~vGKTsLi~r~~~~ 26 (167)
T d1kaoa_ 5 KVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999998993999999999719
|
| >d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6, N-domain species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=87.31 E-value=0.31 Score=21.88 Aligned_cols=15 Identities=27% Similarity=0.195 Sum_probs=6.7
Q ss_pred CCCEEEEECCCCCCC
Q ss_conf 998999827688999
Q 001438 538 NPSILLLDEATSALD 552 (1077)
Q Consensus 538 ~~~illlDe~ts~lD 552 (1077)
.+...++|+.-...+
T Consensus 124 ~~~~~~~~~~d~~~~ 138 (276)
T d1fnna2 124 LYMFLVLDDAFNLAP 138 (276)
T ss_dssp CCEEEEEETGGGSCH
T ss_pred CCCCCCHHHHHHHHH
T ss_conf 543320368887535
|
| >d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL8A [TaxId: 9606]
Probab=87.31 E-value=0.23 Score=22.92 Aligned_cols=21 Identities=38% Similarity=0.496 Sum_probs=18.2
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999983999958999999960
Q 001438 412 IVALVGGSGSGKSTVISLIER 432 (1077)
Q Consensus 412 ~~~ivG~~GsGKStl~~~l~~ 432 (1077)
+++++|++|+|||||++.+.+
T Consensus 4 ki~i~G~~~~GKTsLl~~l~~ 24 (164)
T d1zd9a1 4 ELTLVGLQYSGKTTFVNVIAS 24 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHC
T ss_conf 999999999898999999971
|
| >d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein M-Ras (XRas) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=87.27 E-value=0.48 Score=20.50 Aligned_cols=21 Identities=29% Similarity=0.425 Sum_probs=18.5
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999983999958999999960
Q 001438 412 IVALVGGSGSGKSTVISLIER 432 (1077)
Q Consensus 412 ~~~ivG~~GsGKStl~~~l~~ 432 (1077)
++.++|.+|+|||||++-+.+
T Consensus 6 Ki~lvG~~~vGKTsll~~~~~ 26 (169)
T d1x1ra1 6 KLVVVGDGGVGKSALTIQFFQ 26 (169)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999899598999999970
|
| >d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rad species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.17 E-value=0.25 Score=22.59 Aligned_cols=23 Identities=30% Similarity=0.462 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998399995899999996046
Q 001438 412 IVALVGGSGSGKSTVISLIERFY 434 (1077)
Q Consensus 412 ~~~ivG~~GsGKStl~~~l~~~~ 434 (1077)
+++++|.+|+|||||++.+.+..
T Consensus 3 Ki~lvG~~~vGKTsLi~~~~~~~ 25 (168)
T d2gjsa1 3 KVLLLGAPGVGKSALARIFGGVE 25 (168)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC-
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99998989939999999981885
|
| >d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Equine herpesvirus type 4 [TaxId: 10331]
Probab=87.15 E-value=0.47 Score=20.58 Aligned_cols=32 Identities=25% Similarity=0.155 Sum_probs=25.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCEEEE
Q ss_conf 99998399995899999996046798417999
Q 001438 412 IVALVGGSGSGKSTVISLIERFYEPLSGEILL 443 (1077)
Q Consensus 412 ~~~ivG~~GsGKStl~~~l~~~~~~~~G~i~~ 443 (1077)
.+.|=|+-|+||||+++.|...+....+.+.+
T Consensus 8 rI~iEG~iGsGKSTl~~~L~~~l~~~~~v~~~ 39 (333)
T d1p6xa_ 8 RIYLDGVYGIGKSTTGRVMASAASGGSPTLYF 39 (333)
T ss_dssp EEEEECSTTSSHHHHHHHHHSGGGCSSCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCCCEEEE
T ss_conf 99998886678999999999986569976998
|
| >d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein PH0525 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=87.13 E-value=0.24 Score=22.73 Aligned_cols=22 Identities=32% Similarity=0.380 Sum_probs=20.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999839999589999999604
Q 001438 412 IVALVGGSGSGKSTVISLIERF 433 (1077)
Q Consensus 412 ~~~ivG~~GsGKStl~~~l~~~ 433 (1077)
.+||||.+-+|||||+++|.|-
T Consensus 2 ~v~lvG~pn~GKStlfn~lt~~ 23 (319)
T d1wxqa1 2 EIGVVGKPNVGKSTFFSAATLV 23 (319)
T ss_dssp EEEEEECTTSSHHHHHHHHHC-
T ss_pred CEEEECCCCCCHHHHHHHHHCC
T ss_conf 1768899999899999999788
|
| >d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein GEM species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.13 E-value=0.3 Score=22.04 Aligned_cols=24 Identities=33% Similarity=0.551 Sum_probs=20.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999983999958999999960467
Q 001438 412 IVALVGGSGSGKSTVISLIERFYE 435 (1077)
Q Consensus 412 ~~~ivG~~GsGKStl~~~l~~~~~ 435 (1077)
++.++|..|+|||||++.+.+...
T Consensus 5 Kv~lvG~~~vGKTsLi~~~~~~~~ 28 (172)
T d2g3ya1 5 RVVLIGEQGVGKSTLANIFAGVHD 28 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCCC
T ss_pred EEEEECCCCCCHHHHHHHHHHCCC
T ss_conf 999999899299999999972867
|
| >d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric replicative helicase repA species: Escherichia coli [TaxId: 562]
Probab=87.07 E-value=0.28 Score=22.16 Aligned_cols=46 Identities=13% Similarity=0.206 Sum_probs=26.6
Q ss_pred HHCCCCCEEEEECCCCCC-----CHHHHHHHHHHHHHHH--CCCEEEEECCCC
Q ss_conf 851399899982768899-----9898999999999870--797399982592
Q 001438 534 AIVKNPSILLLDEATSAL-----DAESENSVQEALDRVM--VGRTTVVVAHRL 579 (1077)
Q Consensus 534 al~~~~~illlDe~ts~l-----D~~~~~~i~~~i~~~~--~~~t~i~itH~~ 579 (1077)
....+++++++|--.... |......+...+..+. .+.+++++.|--
T Consensus 128 ~~~~~~~lvviD~l~~~~~~~~~~~~~~~~~~~~l~~la~~~~~~vi~v~H~~ 180 (274)
T d1nlfa_ 128 RAAEGRRLMVLDTLRRFHIEEENASGPMAQVIGRMEAIAADTGCSIVFLHHAS 180 (274)
T ss_dssp HHHTTCSEEEEECGGGGCCSCTTCHHHHHHHHHHHHHHHHHHCCEEEEEEEC-
T ss_pred HHCCCCCEEECCCHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEHHHHCC
T ss_conf 75267658962813542266523225689999887777644797540131005
|
| >d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=86.96 E-value=0.26 Score=22.51 Aligned_cols=53 Identities=25% Similarity=0.503 Sum_probs=36.9
Q ss_pred EECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEE-EECCEECCCCCHHHHHHHEE
Q ss_conf 852996999983999958999999960467984179-99995279999788742046
Q 001438 406 DIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEI-LLDGNNIKGLDLKWLRQQIG 461 (1077)
Q Consensus 406 ~i~~g~~~~ivG~~GsGKStl~~~l~~~~~~~~G~i-~~~g~~~~~~~~~~~r~~i~ 461 (1077)
-++.|..+.+.|++||||||++.-+........|.+ ++|... .++..+.+ +++
T Consensus 56 G~~~g~i~e~~G~~~~GKT~l~l~~~~~~q~~g~~~vyIDtE~--~~~~e~a~-~~G 109 (269)
T d1mo6a1 56 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEH--ALDPDYAK-KLG 109 (269)
T ss_dssp SBCSSSEEEEECSSSSSHHHHHHHHHHHHHHTTCEEEEEESSC--CCCHHHHH-HHT
T ss_pred CCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEEECCC--CCCHHHHH-HHC
T ss_conf 8666336999648874889999999998754898899998976--67999999-809
|
| >d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Transcription termination factor Rho, ATPase domain species: Escherichia coli [TaxId: 562]
Probab=86.95 E-value=0.22 Score=23.01 Aligned_cols=14 Identities=7% Similarity=0.014 Sum_probs=8.8
Q ss_pred HHHHHCCCCCCCCE
Q ss_conf 99996046798417
Q 001438 427 ISLIERFYEPLSGE 440 (1077)
Q Consensus 427 ~~~l~~~~~~~~G~ 440 (1077)
.+.|-.+.+.-.|+
T Consensus 31 ~r~ID~l~PigrGQ 44 (289)
T d1xpua3 31 ARVLDLASPIGRGQ 44 (289)
T ss_dssp HHHHHHHSCCBTTC
T ss_pred CEEEEECCCCCCCC
T ss_conf 33564125645787
|
| >d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Deinococcus radiodurans [TaxId: 1299]
Probab=86.92 E-value=0.23 Score=22.82 Aligned_cols=41 Identities=27% Similarity=0.466 Sum_probs=32.1
Q ss_pred EECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCE-EEECCE
Q ss_conf 85299699998399995899999996046798417-999995
Q 001438 406 DIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGE-ILLDGN 446 (1077)
Q Consensus 406 ~i~~g~~~~ivG~~GsGKStl~~~l~~~~~~~~G~-i~~~g~ 446 (1077)
-++.|..+.+.|++|||||+++..+........|. +++|..
T Consensus 53 Gip~g~itei~G~~~sGKT~l~l~~~~~aqk~g~~v~yiDtE 94 (268)
T d1xp8a1 53 GIPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAE 94 (268)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEECC
T ss_conf 866754789805876522799999999997079989999887
|
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=86.91 E-value=0.3 Score=21.97 Aligned_cols=22 Identities=32% Similarity=0.445 Sum_probs=18.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999839999589999999604
Q 001438 412 IVALVGGSGSGKSTVISLIERF 433 (1077)
Q Consensus 412 ~~~ivG~~GsGKStl~~~l~~~ 433 (1077)
+++++|.+|+|||||++.+...
T Consensus 4 Ki~vvG~~~vGKTSli~~l~~~ 25 (166)
T d1g16a_ 4 KILLIGDSGVGKSCLLVRFVED 25 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999996789999999868
|
| >d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=86.85 E-value=0.22 Score=22.96 Aligned_cols=22 Identities=23% Similarity=0.348 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999839999589999999604
Q 001438 412 IVALVGGSGSGKSTVISLIERF 433 (1077)
Q Consensus 412 ~~~ivG~~GsGKStl~~~l~~~ 433 (1077)
-++++|++++|||||+..|+..
T Consensus 5 ni~iiGhvd~GKSTL~~~Ll~~ 26 (204)
T d2c78a3 5 NVGTIGHVDHGKTTLTAALTYV 26 (204)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHHHH
T ss_conf 9999947898499999999998
|
| >d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.80 E-value=0.24 Score=22.71 Aligned_cols=21 Identities=24% Similarity=0.597 Sum_probs=18.9
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999983999958999999960
Q 001438 412 IVALVGGSGSGKSTVISLIER 432 (1077)
Q Consensus 412 ~~~ivG~~GsGKStl~~~l~~ 432 (1077)
++.++|++|+|||||++.+.+
T Consensus 7 Ki~lvG~~~vGKTsLi~~l~~ 27 (171)
T d2ew1a1 7 KIVLIGNAGVGKTCLVRRFTQ 27 (171)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999198999999972
|
| >d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Escherichia coli [TaxId: 562]
Probab=86.63 E-value=0.32 Score=21.78 Aligned_cols=58 Identities=17% Similarity=0.261 Sum_probs=29.2
Q ss_pred HHHHHHHHHHCCCCCEEEEECCCCC----------CCHHHHHHH---HHHHHHHHCCC--EEEEECCCCHHHH
Q ss_conf 9999999985139989998276889----------998989999---99999870797--3999825923675
Q 001438 526 KQRIAISRAIVKNPSILLLDEATSA----------LDAESENSV---QEALDRVMVGR--TTVVVAHRLSTIR 583 (1077)
Q Consensus 526 kqri~lARal~~~~~illlDe~ts~----------lD~~~~~~i---~~~i~~~~~~~--t~i~itH~~~~~~ 583 (1077)
+=+-.+..|--..|-|+++||.=+- -+......+ ...+.....+. .+|..|++++.+.
T Consensus 92 ~l~~~f~~A~~~~P~il~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~~d~~~~~~~v~vIatTn~~~~ld 164 (256)
T d1lv7a_ 92 RVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLD 164 (256)
T ss_dssp HHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCSSSCEEEEEEESCTTTSC
T ss_pred HHHHHHHHHHHCCCEEEEEECHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCC
T ss_conf 9999999999759989999775665756789888874899999999999953877779989998079931079
|
| >d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Escherichia coli [TaxId: 562]
Probab=86.50 E-value=0.21 Score=23.09 Aligned_cols=14 Identities=7% Similarity=0.290 Sum_probs=9.0
Q ss_pred CCCEEEEECCCCCC
Q ss_conf 99899982768899
Q 001438 538 NPSILLLDEATSAL 551 (1077)
Q Consensus 538 ~~~illlDe~ts~l 551 (1077)
+++++++|-.++..
T Consensus 132 ~~~liViDSi~al~ 145 (263)
T d1u94a1 132 AVDVIVVDSVAALT 145 (263)
T ss_dssp CCSEEEEECGGGCC
T ss_pred CCCEEEEECCCCCC
T ss_conf 99899998865566
|
| >d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rac species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.42 E-value=0.27 Score=22.34 Aligned_cols=21 Identities=19% Similarity=0.324 Sum_probs=18.6
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999983999958999999960
Q 001438 412 IVALVGGSGSGKSTVISLIER 432 (1077)
Q Consensus 412 ~~~ivG~~GsGKStl~~~l~~ 432 (1077)
+++++|.+|+|||||++-+..
T Consensus 7 KivviG~~~vGKTsli~~~~~ 27 (183)
T d1mh1a_ 7 KCVVVGDGAVGKTCLLISYTT 27 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999799999999974
|
| >d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyguanosine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.38 E-value=0.25 Score=22.55 Aligned_cols=27 Identities=26% Similarity=0.482 Sum_probs=22.9
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 969999839999589999999604679
Q 001438 410 GKIVALVGGSGSGKSTVISLIERFYEP 436 (1077)
Q Consensus 410 g~~~~ivG~~GsGKStl~~~l~~~~~~ 436 (1077)
.+.++|-|+-||||||+++.|...+..
T Consensus 2 pk~IviEG~~GsGKST~~~~L~~~l~~ 28 (241)
T d2ocpa1 2 PRRLSIEGNIAVGKSTFVKLLTKTYPE 28 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHCTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 819999899888599999999998730
|
| >d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoE (RND3) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=86.35 E-value=0.54 Score=20.12 Aligned_cols=21 Identities=24% Similarity=0.574 Sum_probs=18.0
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999983999958999999960
Q 001438 412 IVALVGGSGSGKSTVISLIER 432 (1077)
Q Consensus 412 ~~~ivG~~GsGKStl~~~l~~ 432 (1077)
++.++|.+|+|||||++-+..
T Consensus 4 KivliG~~~vGKTsli~r~~~ 24 (179)
T d1m7ba_ 4 KIVVVGDSQCGKTALLHVFAK 24 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999598999999972
|
| >d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=86.25 E-value=0.21 Score=23.08 Aligned_cols=45 Identities=18% Similarity=0.315 Sum_probs=25.5
Q ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCHHH
Q ss_conf 3998999827688999898999999999870797399982592367
Q 001438 537 KNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTI 582 (1077)
Q Consensus 537 ~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~ 582 (1077)
.++.++++||.-. +.......+...+.........|+++++.+.+
T Consensus 108 ~~~~iilide~d~-~~~~~~~~ll~~l~~~~~~~~~i~~~n~~~~i 152 (231)
T d1iqpa2 108 ASFKIIFLDEADA-LTQDAQQALRRTMEMFSSNVRFILSCNYSSKI 152 (231)
T ss_dssp CSCEEEEEETGGG-SCHHHHHHHHHHHHHTTTTEEEEEEESCGGGS
T ss_pred CCCEEEEEHHHHH-CCHHHHHHHHHHCCCCCCCEEEEECCCCHHHC
T ss_conf 8722886143443-12147898764112477644788614876656
|
| >d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=86.20 E-value=0.27 Score=22.34 Aligned_cols=24 Identities=29% Similarity=0.332 Sum_probs=21.4
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 969999839999589999999604
Q 001438 410 GKIVALVGGSGSGKSTVISLIERF 433 (1077)
Q Consensus 410 g~~~~ivG~~GsGKStl~~~l~~~ 433 (1077)
+=+++|||.+.+|||||+++|.+-
T Consensus 10 ~~kiGivG~Pn~GKSTlfnalT~~ 33 (296)
T d1ni3a1 10 NLKTGIVGMPNVGKSTFFRAITKS 33 (296)
T ss_dssp CCEEEEEECSSSSHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHHCC
T ss_conf 737999789999899999999778
|
| >d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Ytp1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=86.10 E-value=0.37 Score=21.36 Aligned_cols=21 Identities=33% Similarity=0.526 Sum_probs=18.4
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999983999958999999960
Q 001438 412 IVALVGGSGSGKSTVISLIER 432 (1077)
Q Consensus 412 ~~~ivG~~GsGKStl~~~l~~ 432 (1077)
+++++|+.|+|||||++-+..
T Consensus 8 KivvvG~~~vGKTsli~~l~~ 28 (194)
T d2bcgy1 8 KLLLIGNSGVGKSCLLLRFSD 28 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999098999999961
|
| >d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=86.09 E-value=0.21 Score=23.09 Aligned_cols=43 Identities=16% Similarity=0.293 Sum_probs=22.0
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCHH
Q ss_conf 99899982768899989899999999987079739998259236
Q 001438 538 NPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLST 581 (1077)
Q Consensus 538 ~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~ 581 (1077)
+.+++++||.-.- -......+...+.......-.|+++++.+.
T Consensus 108 ~~~viiiDe~d~l-~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~ 150 (237)
T d1sxjd2 108 PYKIIILDEADSM-TADAQSALRRTMETYSGVTRFCLICNYVTR 150 (237)
T ss_dssp SCEEEEETTGGGS-CHHHHHHHHHHHHHTTTTEEEEEEESCGGG
T ss_pred CCEEEEEECCCCC-CHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
T ss_conf 7369999551336-777788876301222233332122466422
|
| >d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab14 species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.97 E-value=0.4 Score=21.10 Aligned_cols=22 Identities=23% Similarity=0.382 Sum_probs=18.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999839999589999999604
Q 001438 412 IVALVGGSGSGKSTVISLIERF 433 (1077)
Q Consensus 412 ~~~ivG~~GsGKStl~~~l~~~ 433 (1077)
++.++|.+|+|||||++-+.+.
T Consensus 6 KivlvG~~~vGKTsli~~~~~~ 27 (166)
T d1z0fa1 6 KYIIIGDMGVGKSCLLHQFTEK 27 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999994989999999729
|
| >d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoA species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.88 E-value=0.29 Score=22.14 Aligned_cols=23 Identities=22% Similarity=0.406 Sum_probs=19.3
Q ss_pred CEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 69999839999589999999604
Q 001438 411 KIVALVGGSGSGKSTVISLIERF 433 (1077)
Q Consensus 411 ~~~~ivG~~GsGKStl~~~l~~~ 433 (1077)
.++.++|.+|+|||||++-+..-
T Consensus 3 ~KivvvG~~~vGKTsLi~~~~~~ 25 (177)
T d1kmqa_ 3 KKLVIVGDGACGKTCLLIVNSKD 25 (177)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHHC
T ss_conf 79999998993889999999719
|
| >d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab18 species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.85 E-value=0.4 Score=21.07 Aligned_cols=21 Identities=29% Similarity=0.536 Sum_probs=18.9
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999983999958999999960
Q 001438 412 IVALVGGSGSGKSTVISLIER 432 (1077)
Q Consensus 412 ~~~ivG~~GsGKStl~~~l~~ 432 (1077)
+++++|..|+|||||++.+.+
T Consensus 9 Ki~vvG~~~vGKTsli~~l~~ 29 (177)
T d1x3sa1 9 KILIIGESGVGKSSLLLRFTD 29 (177)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 899999899088999999971
|
| >d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-33b species: Mouse (Mus musculus) [TaxId: 10090]
Probab=85.55 E-value=0.32 Score=21.74 Aligned_cols=23 Identities=17% Similarity=0.294 Sum_probs=19.1
Q ss_pred EEEEECCCCCCHHHHHHHHH-CCC
Q ss_conf 99998399995899999996-046
Q 001438 412 IVALVGGSGSGKSTVISLIE-RFY 434 (1077)
Q Consensus 412 ~~~ivG~~GsGKStl~~~l~-~~~ 434 (1077)
+++++|..|+|||||++-+. +.+
T Consensus 4 Kv~liG~~~vGKTsLl~~~~~~~~ 27 (165)
T d1z06a1 4 KIIVIGDSNVGKTCLTYRFCAGRF 27 (165)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSSC
T ss_pred EEEEECCCCCCHHHHHHHHHHCCC
T ss_conf 999999999298999999973999
|
| >d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ypt51 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=85.36 E-value=0.44 Score=20.79 Aligned_cols=21 Identities=24% Similarity=0.419 Sum_probs=18.3
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999983999958999999960
Q 001438 412 IVALVGGSGSGKSTVISLIER 432 (1077)
Q Consensus 412 ~~~ivG~~GsGKStl~~~l~~ 432 (1077)
+++++|..|+|||||++-+..
T Consensus 5 Ki~vvG~~~vGKTsLi~~~~~ 25 (170)
T d1ek0a_ 5 KLVLLGEAAVGKSSIVLRFVS 25 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999198999999972
|
| >d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.34 E-value=0.32 Score=21.76 Aligned_cols=21 Identities=33% Similarity=0.547 Sum_probs=18.5
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999983999958999999960
Q 001438 412 IVALVGGSGSGKSTVISLIER 432 (1077)
Q Consensus 412 ~~~ivG~~GsGKStl~~~l~~ 432 (1077)
+++++|..|+|||||++-+..
T Consensus 8 Kv~lvG~~~vGKTsLi~r~~~ 28 (173)
T d2fn4a1 8 KLVVVGGGGVGKSALTIQFIQ 28 (173)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999799698999999973
|
| >d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab4a species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.28 E-value=0.32 Score=21.81 Aligned_cols=21 Identities=24% Similarity=0.491 Sum_probs=18.4
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999983999958999999960
Q 001438 412 IVALVGGSGSGKSTVISLIER 432 (1077)
Q Consensus 412 ~~~ivG~~GsGKStl~~~l~~ 432 (1077)
+++++|..|+|||||++-+.+
T Consensus 7 KI~lvG~~~vGKTsll~~~~~ 27 (174)
T d2bmea1 7 KFLVIGNAGTGKSCLLHQFIE 27 (174)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999099999999970
|
| >d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab21 species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.26 E-value=0.34 Score=21.59 Aligned_cols=21 Identities=24% Similarity=0.327 Sum_probs=18.4
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999983999958999999960
Q 001438 412 IVALVGGSGSGKSTVISLIER 432 (1077)
Q Consensus 412 ~~~ivG~~GsGKStl~~~l~~ 432 (1077)
++.++|.+|+|||||++-+.+
T Consensus 5 KivlvG~~~vGKTsLi~r~~~ 25 (167)
T d1z08a1 5 KVVLLGEGCVGKTSLVLRYCE 25 (167)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999398999999982
|
| >d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=85.25 E-value=0.24 Score=22.70 Aligned_cols=44 Identities=18% Similarity=0.315 Sum_probs=28.9
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCHHH
Q ss_conf 998999827688999898999999999870797399982592367
Q 001438 538 NPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTI 582 (1077)
Q Consensus 538 ~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~ 582 (1077)
+.+++++||.-. +.......+...+.........+++++..+.+
T Consensus 101 ~~kviiiDe~d~-~~~~~~~~ll~~~e~~~~~~~~i~~~~~~~~i 144 (224)
T d1sxjb2 101 KHKIVILDEADS-MTAGAQQALRRTMELYSNSTRFAFACNQSNKI 144 (224)
T ss_dssp CCEEEEEESGGG-SCHHHHHTTHHHHHHTTTTEEEEEEESCGGGS
T ss_pred CEEEEEEECCCC-CCHHHHHHHHHHCCCCCCCEEEEECCCCHHHH
T ss_conf 359999824432-32157787752011233333665314743021
|
| >d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-22a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=85.17 E-value=0.35 Score=21.53 Aligned_cols=21 Identities=33% Similarity=0.548 Sum_probs=18.6
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999983999958999999960
Q 001438 412 IVALVGGSGSGKSTVISLIER 432 (1077)
Q Consensus 412 ~~~ivG~~GsGKStl~~~l~~ 432 (1077)
+++++|.+|+|||||++-+..
T Consensus 6 Ki~lvG~~~vGKTsli~rl~~ 26 (167)
T d1z0ja1 6 KVCLLGDTGVGKSSIMWRFVE 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 899999899499999999973
|
| >d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=85.04 E-value=0.4 Score=21.09 Aligned_cols=11 Identities=18% Similarity=0.498 Sum_probs=5.1
Q ss_pred CCEEEEECCCC
Q ss_conf 98999827688
Q 001438 539 PSILLLDEATS 549 (1077)
Q Consensus 539 ~~illlDe~ts 549 (1077)
..++++||+-.
T Consensus 124 ~~vi~ide~~~ 134 (253)
T d1sxja2 124 HFVIIMDEVDG 134 (253)
T ss_dssp SEEEEECSGGG
T ss_pred CEEEEEEECCC
T ss_conf 13777630111
|
| >d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Cow (Bos taurus) [TaxId: 9913]
Probab=85.01 E-value=0.42 Score=20.95 Aligned_cols=31 Identities=29% Similarity=0.309 Sum_probs=24.0
Q ss_pred CCEEEEECCCCCCHHHHHHHH-HCCCCCCCCE
Q ss_conf 969999839999589999999-6046798417
Q 001438 410 GKIVALVGGSGSGKSTVISLI-ERFYEPLSGE 440 (1077)
Q Consensus 410 g~~~~ivG~~GsGKStl~~~l-~~~~~~~~G~ 440 (1077)
--++.++|.+|+|||||++-+ .+.+.|+-|-
T Consensus 6 ~~KilllG~~~vGKTsll~~~~~~~~~pTiG~ 37 (221)
T d1azta2 6 THRLLLLGAGESGKSTIVKQMRILHVVLTSGI 37 (221)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHHHHCCCCCSC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCCCCCCE
T ss_conf 47799998999988999998950982788886
|
| >d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase YlqF species: Bacillus subtilis [TaxId: 1423]
Probab=84.95 E-value=0.39 Score=21.15 Aligned_cols=27 Identities=22% Similarity=0.239 Sum_probs=23.3
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 996999983999958999999960467
Q 001438 409 AGKIVALVGGSGSGKSTVISLIERFYE 435 (1077)
Q Consensus 409 ~g~~~~ivG~~GsGKStl~~~l~~~~~ 435 (1077)
.+-.+++||.+-+|||||++.|.|.-.
T Consensus 111 ~~~~v~vvG~PNvGKSsliN~L~~~~~ 137 (273)
T d1puja_ 111 RAIRALIIGIPNVGKSTLINRLAKKNI 137 (273)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTSCC
T ss_pred CCEEEEEEECCCCCHHHHHHHHHCCCE
T ss_conf 752789986675443555425426615
|
| >d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab5a species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.73 E-value=0.48 Score=20.45 Aligned_cols=21 Identities=29% Similarity=0.461 Sum_probs=18.6
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999983999958999999960
Q 001438 412 IVALVGGSGSGKSTVISLIER 432 (1077)
Q Consensus 412 ~~~ivG~~GsGKStl~~~l~~ 432 (1077)
++.++|..|+|||||++-+..
T Consensus 8 Ki~vvG~~~vGKTsLi~~l~~ 28 (170)
T d1r2qa_ 8 KLVLLGESAVGKSSLVLRFVK 28 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999498999999985
|
| >d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=84.73 E-value=0.33 Score=21.68 Aligned_cols=21 Identities=19% Similarity=0.205 Sum_probs=18.5
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999983999958999999960
Q 001438 412 IVALVGGSGSGKSTVISLIER 432 (1077)
Q Consensus 412 ~~~ivG~~GsGKStl~~~l~~ 432 (1077)
-++|+|+.|||||||+-.|+-
T Consensus 8 ni~i~gh~~~GKTtL~e~ll~ 28 (276)
T d2bv3a2 8 NIGIAAHIDAGKTTTTERILY 28 (276)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHHH
T ss_conf 999995898998999999999
|
| >d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Staphylococcus xylosus [TaxId: 1288]
Probab=84.57 E-value=0.55 Score=20.03 Aligned_cols=32 Identities=28% Similarity=0.319 Sum_probs=24.2
Q ss_pred CCCEEEEECCCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 000038852996999983999958999999960
Q 001438 400 FDKFCLDIPAGKIVALVGGSGSGKSTVISLIER 432 (1077)
Q Consensus 400 l~~~~~~i~~g~~~~ivG~~GsGKStl~~~l~~ 432 (1077)
++...+. -.|.-+.+.|++|+||||+...+..
T Consensus 6 ~H~~~v~-~~g~gvli~G~sg~GKS~la~~l~~ 37 (169)
T d1ko7a2 6 LHGVLVD-VYGVGVLITGDSGIGKSETALELIK 37 (169)
T ss_dssp EESEEEE-ETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEEE-ECCEEEEEEECCCCCHHHHHHHHHH
T ss_conf 8899999-9999999980899999999999998
|
| >d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=84.50 E-value=0.33 Score=21.70 Aligned_cols=33 Identities=18% Similarity=0.222 Sum_probs=24.7
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECC
Q ss_conf 69999839999589999999604679841799999
Q 001438 411 KIVALVGGSGSGKSTVISLIERFYEPLSGEILLDG 445 (1077)
Q Consensus 411 ~~~~ivG~~GsGKStl~~~l~~~~~~~~G~i~~~g 445 (1077)
..+.++||+|+|||.|.+.|...+.. --+.+|.
T Consensus 53 ~~~lf~Gp~GvGKT~lak~la~~l~~--~~i~~d~ 85 (315)
T d1r6bx3 53 GSFLFAGPTGVGKTEVTVQLSKALGI--ELLRFDM 85 (315)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHTC--EEEEEEG
T ss_pred EEEEEECCCCCHHHHHHHHHHHHCCC--CEEEECC
T ss_conf 58999778750069999999863367--7067415
|
| >d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=84.29 E-value=0.28 Score=22.26 Aligned_cols=44 Identities=20% Similarity=0.375 Sum_probs=30.2
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCHHH
Q ss_conf 998999827688999898999999999870797399982592367
Q 001438 538 NPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTI 582 (1077)
Q Consensus 538 ~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~ 582 (1077)
+.+++++||.- .+.......+...+....+....+++++....+
T Consensus 99 ~~kiiiiDe~d-~~~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~i 142 (227)
T d1sxjc2 99 GFKLIILDEAD-AMTNAAQNALRRVIERYTKNTRFCVLANYAHKL 142 (227)
T ss_dssp SCEEEEETTGG-GSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGS
T ss_pred CEEEEEEECCC-CCHHHHHHHHHHHHHHCCCCEEECCCCCCHHHH
T ss_conf 71899996632-000237899998863112002320126708775
|
| >d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Sulfolobus solfataricus [TaxId: 2287]
Probab=84.19 E-value=0.52 Score=20.21 Aligned_cols=27 Identities=22% Similarity=0.415 Sum_probs=22.0
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 996999983999958999999960467
Q 001438 409 AGKIVALVGGSGSGKSTVISLIERFYE 435 (1077)
Q Consensus 409 ~g~~~~ivG~~GsGKStl~~~l~~~~~ 435 (1077)
|.=-++|+|++.+|||||+..|++...
T Consensus 7 p~ini~iiGhVd~GKSTL~~~L~~~~~ 33 (205)
T d2qn6a3 7 PEVNIGVVGHVDHGKTTLVQAITGIWT 33 (205)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHSCCC
T ss_pred CCEEEEEEECCCCCHHHHHHHHHHHHC
T ss_conf 970899997248869999999970412
|
| >d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: NTPase P4 species: Bacteriophage phi-12 [TaxId: 161736]
Probab=83.91 E-value=0.32 Score=21.76 Aligned_cols=39 Identities=15% Similarity=0.205 Sum_probs=25.5
Q ss_pred EECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECC
Q ss_conf 8529969999839999589999999604679841799999
Q 001438 406 DIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDG 445 (1077)
Q Consensus 406 ~i~~g~~~~ivG~~GsGKStl~~~l~~~~~~~~G~i~~~g 445 (1077)
..++| .+.++||+|+|||.+.+.|.++......-+.+++
T Consensus 120 ~~~~g-~~l~~G~pG~GKT~la~ala~~~~~~~~~~~~~~ 158 (321)
T d1w44a_ 120 RYASG-MVIVTGKGNSGKTPLVHALGEALGGKDKYATVRF 158 (321)
T ss_dssp EEESE-EEEEECSSSSCHHHHHHHHHHHHHTTSCCEEEEB
T ss_pred CCCCC-EEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEEH
T ss_conf 36886-3888779985088999999998637998089782
|
| >d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab26 species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.71 E-value=0.43 Score=20.84 Aligned_cols=21 Identities=38% Similarity=0.582 Sum_probs=18.2
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999983999958999999960
Q 001438 412 IVALVGGSGSGKSTVISLIER 432 (1077)
Q Consensus 412 ~~~ivG~~GsGKStl~~~l~~ 432 (1077)
+++++|+.|+|||||++-+.+
T Consensus 8 Ki~vvG~~~vGKTsli~~~~~ 28 (170)
T d2g6ba1 8 KVMLVGDSGVGKTCLLVRFKD 28 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999299999999971
|
| >d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]
Probab=83.70 E-value=0.24 Score=22.76 Aligned_cols=24 Identities=21% Similarity=0.403 Sum_probs=19.7
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 996999983999958999999960
Q 001438 409 AGKIVALVGGSGSGKSTVISLIER 432 (1077)
Q Consensus 409 ~g~~~~ivG~~GsGKStl~~~l~~ 432 (1077)
+-=+++++|++|+|||||++-+.+
T Consensus 16 k~~KI~lvG~~~vGKTsLi~~l~~ 39 (182)
T d1moza_ 16 KELRILILGLDGAGKTTILYRLQI 39 (182)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCC
T ss_pred CEEEEEEECCCCCCHHHHHHHHHC
T ss_conf 668999999999988999988733
|
| >d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab8a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=83.55 E-value=0.24 Score=22.74 Aligned_cols=21 Identities=33% Similarity=0.536 Sum_probs=18.1
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999983999958999999960
Q 001438 412 IVALVGGSGSGKSTVISLIER 432 (1077)
Q Consensus 412 ~~~ivG~~GsGKStl~~~l~~ 432 (1077)
+++++|.+|+|||||++.+.+
T Consensus 8 Ki~vvG~~~vGKTsLi~~l~~ 28 (173)
T d2fu5c1 8 KLLLIGDSGVGKTCVLFRFSE 28 (173)
T ss_dssp EEEEECCCCC-----------
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999499999999970
|
| >d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of beta subunit of F1 ATP synthase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=83.49 E-value=0.53 Score=20.14 Aligned_cols=14 Identities=14% Similarity=0.249 Sum_probs=7.5
Q ss_pred HHHHHCCCCCCCCE
Q ss_conf 99996046798417
Q 001438 427 ISLIERFYEPLSGE 440 (1077)
Q Consensus 427 ~~~l~~~~~~~~G~ 440 (1077)
++.+-.+.+.-.|+
T Consensus 56 IraID~l~pigkGQ 69 (276)
T d2jdid3 56 IKVVDLLAPYAKGG 69 (276)
T ss_dssp CHHHHHHSCEETTC
T ss_pred CEEEEEECCCCCCC
T ss_conf 52031025636788
|
| >d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Bacterial conjugative coupling protein TrwB species: Escherichia coli [TaxId: 562]
Probab=83.48 E-value=0.37 Score=21.36 Aligned_cols=35 Identities=17% Similarity=0.274 Sum_probs=24.0
Q ss_pred CEEEEECCCCCCHHHHHHHHH-CCCCCCCCEEEECC
Q ss_conf 699998399995899999996-04679841799999
Q 001438 411 KIVALVGGSGSGKSTVISLIE-RFYEPLSGEILLDG 445 (1077)
Q Consensus 411 ~~~~ivG~~GsGKStl~~~l~-~~~~~~~G~i~~~g 445 (1077)
..+.|+|++|||||++++.+. ..+....+-|.+|.
T Consensus 51 ~H~~I~G~tGsGKT~~l~~li~~~~~~g~~~iiiD~ 86 (433)
T d1e9ra_ 51 RHLLVNGATGTGKSVLLRELAYTGLLRGDRMVIVDP 86 (433)
T ss_dssp GCEEEEECTTSSHHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred CEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEEC
T ss_conf 658999079996899999999999847998899968
|
| >d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoQ species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.41 E-value=0.44 Score=20.76 Aligned_cols=21 Identities=19% Similarity=0.340 Sum_probs=18.3
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999983999958999999960
Q 001438 412 IVALVGGSGSGKSTVISLIER 432 (1077)
Q Consensus 412 ~~~ivG~~GsGKStl~~~l~~ 432 (1077)
+++++|.+|+|||||++-+..
T Consensus 11 Ki~lvG~~~vGKTsLi~r~~~ 31 (185)
T d2atxa1 11 KCVVVGDGAVGKTCLLMSYAN 31 (185)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999899999999964
|
| >d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermotoga maritima [TaxId: 2336]
Probab=83.32 E-value=0.34 Score=21.54 Aligned_cols=28 Identities=21% Similarity=0.382 Sum_probs=14.8
Q ss_pred HCCCCCEEEEECCCCCCCHHHHHHHHHHH
Q ss_conf 51399899982768899989899999999
Q 001438 535 IVKNPSILLLDEATSALDAESENSVQEAL 563 (1077)
Q Consensus 535 l~~~~~illlDe~ts~lD~~~~~~i~~~i 563 (1077)
...+..++++||.-. ++...+......+
T Consensus 83 ~~~~~~~~~ide~~~-~~~~~~~~l~~~~ 110 (238)
T d1in4a2 83 SLERGDVLFIDEIHR-LNKAVEELLYSAI 110 (238)
T ss_dssp HCCTTCEEEEETGGG-CCHHHHHHHHHHH
T ss_pred HHCCCCCHHHHHHHH-HHHHHHHHCCCCE
T ss_conf 543588247778988-4067776421402
|
| >d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=83.13 E-value=0.51 Score=20.28 Aligned_cols=60 Identities=20% Similarity=0.217 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHH---------HHHHHHHHHHHH------CCCEEEEECCCCHHH
Q ss_conf 489999999998513998999827688999898---------999999999870------797399982592367
Q 001438 523 GGQKQRIAISRAIVKNPSILLLDEATSALDAES---------ENSVQEALDRVM------VGRTTVVVAHRLSTI 582 (1077)
Q Consensus 523 gGqkqri~lARal~~~~~illlDe~ts~lD~~~---------~~~i~~~i~~~~------~~~t~i~itH~~~~~ 582 (1077)
..++-|-.+.+|-...|-|+++||.-+-....+ ...+...+.... .+.-+|..|++.+.+
T Consensus 85 ~~~~l~~~f~~A~~~~p~il~ideid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~l 159 (265)
T d1r7ra3 85 SEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDII 159 (265)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEESSGGGTCCHHHHCCCTTHHHHHHHHHHHHHTCC------CCEEEECCBSCTTT
T ss_pred HHHHHHHHHHHHHHCCCCCEEHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCHHC
T ss_conf 589999999999863984356875463245578767887379999999999996286777998999917992227
|
| >d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=83.00 E-value=0.35 Score=21.46 Aligned_cols=23 Identities=22% Similarity=0.317 Sum_probs=20.1
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99983999958999999960467
Q 001438 413 VALVGGSGSGKSTVISLIERFYE 435 (1077)
Q Consensus 413 ~~ivG~~GsGKStl~~~l~~~~~ 435 (1077)
+-+.||+|+||||+++++.+.+.
T Consensus 39 ~ll~Gp~G~GKTt~a~~la~~l~ 61 (224)
T d1sxjb2 39 MIISGMPGIGKTTSVHCLAHELL 61 (224)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCCHHHHHHHHHHHH
T ss_conf 99988999870546999999972
|
| >d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ran species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.96 E-value=0.26 Score=22.44 Aligned_cols=21 Identities=33% Similarity=0.510 Sum_probs=18.0
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999983999958999999960
Q 001438 412 IVALVGGSGSGKSTVISLIER 432 (1077)
Q Consensus 412 ~~~ivG~~GsGKStl~~~l~~ 432 (1077)
+++++|++|+|||||++-+..
T Consensus 5 Ki~vvG~~~vGKTsli~~~~~ 25 (170)
T d1i2ma_ 5 KLVLVGDGGTGKTTFVKRHLT 25 (170)
T ss_dssp EEEEEECTTSSHHHHHHTTC-
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999088999999984
|
| >d1fx0a3 c.37.1.11 (A:97-372) Central domain of alpha subunit of F1 ATP synthase {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of alpha subunit of F1 ATP synthase species: Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]
Probab=82.93 E-value=0.24 Score=22.78 Aligned_cols=37 Identities=16% Similarity=0.247 Sum_probs=27.9
Q ss_pred CCCCCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 42000038852996999983999958999999960467
Q 001438 398 AIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYE 435 (1077)
Q Consensus 398 ~~l~~~~~~i~~g~~~~ivG~~GsGKStl~~~l~~~~~ 435 (1077)
.+++.+ +.+-+|++.+|+|++|+|||+|+..+..-..
T Consensus 56 ~~ID~l-~pig~GQr~~Ifg~~g~GKt~l~~~~~~~~~ 92 (276)
T d1fx0a3 56 IAIDAM-IPVGRGQRELIIGDRQTGKTAVATDTILNQQ 92 (276)
T ss_dssp TTTTTT-SCCBTTCBCBEEESSSSSHHHHHHHHHHTCC
T ss_pred EEEECC-CCCCCCCEEEECCCCCCCHHHHHHHHHHHHC
T ss_conf 677501-4546776676006778885799999776540
|
| >d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap1A species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.93 E-value=0.48 Score=20.47 Aligned_cols=21 Identities=24% Similarity=0.449 Sum_probs=18.3
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999983999958999999960
Q 001438 412 IVALVGGSGSGKSTVISLIER 432 (1077)
Q Consensus 412 ~~~ivG~~GsGKStl~~~l~~ 432 (1077)
+++++|.+|+|||||++-+..
T Consensus 5 KivvvG~~~vGKTsli~r~~~ 25 (167)
T d1c1ya_ 5 KLVVLGSGGVGKSALTVQFVQ 25 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHC
T ss_conf 999999899899999999970
|
| >d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=82.92 E-value=0.75 Score=19.05 Aligned_cols=30 Identities=30% Similarity=0.451 Sum_probs=23.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCEE
Q ss_conf 999983999958999999960467984179
Q 001438 412 IVALVGGSGSGKSTVISLIERFYEPLSGEI 441 (1077)
Q Consensus 412 ~~~ivG~~GsGKStl~~~l~~~~~~~~G~i 441 (1077)
++.++|..|+|||||++-+.....|+.|..
T Consensus 4 KivllG~~~vGKTsl~~r~~~~~~~t~~~~ 33 (195)
T d1svsa1 4 KLLLLGAGESGKSTIVKQMKIIHEAGTGIV 33 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHSCCCSEE
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCCCCCEE
T ss_conf 999999999888999998840897972479
|
| >d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: CDC42 species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.69 E-value=0.48 Score=20.50 Aligned_cols=21 Identities=19% Similarity=0.324 Sum_probs=18.1
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999983999958999999960
Q 001438 412 IVALVGGSGSGKSTVISLIER 432 (1077)
Q Consensus 412 ~~~ivG~~GsGKStl~~~l~~ 432 (1077)
+++++|.+|+|||||++-+..
T Consensus 5 KvvllG~~~vGKTSli~r~~~ 25 (191)
T d2ngra_ 5 KCVVVGDGAVGKTCLLISYTT 25 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999699999999971
|
| >d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Haemophilus influenzae [TaxId: 727]
Probab=82.64 E-value=0.51 Score=20.26 Aligned_cols=23 Identities=26% Similarity=0.340 Sum_probs=20.9
Q ss_pred CEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 69999839999589999999604
Q 001438 411 KIVALVGGSGSGKSTVISLIERF 433 (1077)
Q Consensus 411 ~~~~ivG~~GsGKStl~~~l~~~ 433 (1077)
=+++|||-+-+|||||+++|.+-
T Consensus 3 ~~~GivG~Pn~GKSTlf~~lt~~ 25 (278)
T d1jala1 3 FKCGIVGLPNVGKSTLFNALTKA 25 (278)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHCC
T ss_conf 34888899999889999999779
|
| >d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CED-4, NB-ARC domain species: Caenorhabditis elegans [TaxId: 6239]
Probab=82.52 E-value=0.51 Score=20.31 Aligned_cols=27 Identities=30% Similarity=0.290 Sum_probs=22.3
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 996999983999958999999960467
Q 001438 409 AGKIVALVGGSGSGKSTVISLIERFYE 435 (1077)
Q Consensus 409 ~g~~~~ivG~~GsGKStl~~~l~~~~~ 435 (1077)
....++|+|..|.|||||++.+.....
T Consensus 43 ~~~~v~I~GmgGiGKTtLA~~v~~~~~ 69 (277)
T d2a5yb3 43 DSFFLFLHGRAGSGKSVIASQALSKSD 69 (277)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHHCS
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 840899977997888999999998556
|
| >d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=82.42 E-value=0.37 Score=21.27 Aligned_cols=23 Identities=26% Similarity=0.433 Sum_probs=20.3
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99983999958999999960467
Q 001438 413 VALVGGSGSGKSTVISLIERFYE 435 (1077)
Q Consensus 413 ~~ivG~~GsGKStl~~~l~~~~~ 435 (1077)
+-+.||+|+||||+++++.+++.
T Consensus 38 lLl~Gp~G~GKttl~~~la~~l~ 60 (227)
T d1sxjc2 38 LLFYGPPGTGKTSTIVALAREIY 60 (227)
T ss_dssp EEEECSSSSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
T ss_conf 99988998775589999999851
|
| >d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Varicella-zoster virus [TaxId: 10335]
Probab=82.40 E-value=0.55 Score=20.05 Aligned_cols=30 Identities=23% Similarity=0.282 Sum_probs=24.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCEE
Q ss_conf 999983999958999999960467984179
Q 001438 412 IVALVGGSGSGKSTVISLIERFYEPLSGEI 441 (1077)
Q Consensus 412 ~~~ivG~~GsGKStl~~~l~~~~~~~~G~i 441 (1077)
.+.|=|+-|+||||+++.|...+......+
T Consensus 7 rI~IEG~iGsGKSTl~~~L~~~l~~~g~~v 36 (331)
T d1osna_ 7 RIYLDGAYGIGKTTAAEEFLHHFAITPNRI 36 (331)
T ss_dssp EEEEEESSSSCTTHHHHHHHHTTTTSGGGE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCCE
T ss_conf 999988877889999999999873468856
|
| >d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermus thermophilus [TaxId: 274]
Probab=82.31 E-value=0.4 Score=21.10 Aligned_cols=34 Identities=26% Similarity=0.420 Sum_probs=19.0
Q ss_pred HHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHH
Q ss_conf 99998513998999827688999898999999999
Q 001438 530 AISRAIVKNPSILLLDEATSALDAESENSVQEALD 564 (1077)
Q Consensus 530 ~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~ 564 (1077)
...+-...+..++++||.-. +....+..+...+.
T Consensus 79 ~~~~~~~~~~~i~~iDe~~~-~~~~~~~~l~~~~e 112 (239)
T d1ixsb2 79 AILANSLEEGDILFIDEIHR-LSRQAEEHLYPAME 112 (239)
T ss_dssp HHHHTTCCTTCEEEEETGGG-CCHHHHHHHHHHHH
T ss_pred HHHHHHCCCCCEEEEECCCC-CCHHHHHHHHHHHH
T ss_conf 99885103887344311001-10447875001243
|
| >d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: YjeE-like domain: Hypothetical protein HI0065 species: Haemophilus influenzae [TaxId: 727]
Probab=82.07 E-value=0.39 Score=21.15 Aligned_cols=25 Identities=8% Similarity=0.187 Sum_probs=13.9
Q ss_pred HHHHHHC----CCCCEEEEECCCCCCCHH
Q ss_conf 9999851----399899982768899989
Q 001438 530 AISRAIV----KNPSILLLDEATSALDAE 554 (1077)
Q Consensus 530 ~lARal~----~~~~illlDe~ts~lD~~ 554 (1077)
.+|+.+. +.+++++|.=+..|=-..
T Consensus 20 ~la~~l~~~~~~~g~ii~L~G~LGaGKTt 48 (158)
T d1htwa_ 20 KFAEILLKLHTEKAIMVYLNGDLGAGKTT 48 (158)
T ss_dssp HHHHHHHHHCCSSCEEEEEECSTTSSHHH
T ss_pred HHHHHHHHCCCCCCEEEEEECCCCCCHHH
T ss_conf 99999875157998299996687765889
|
| >d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain species: Pseudomonas syringae pv. tomato [TaxId: 323]
Probab=82.04 E-value=0.56 Score=20.00 Aligned_cols=21 Identities=29% Similarity=0.300 Sum_probs=18.7
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999839999589999999604
Q 001438 413 VALVGGSGSGKSTVISLIERF 433 (1077)
Q Consensus 413 ~~ivG~~GsGKStl~~~l~~~ 433 (1077)
++++|++.+|||||+..|+..
T Consensus 12 i~viGHVd~GKSTL~~~Ll~~ 32 (222)
T d1zunb3 12 FLTCGNVDDGKSTLIGRLLHD 32 (222)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
T ss_conf 999937898989999999998
|
| >d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6-like protein APE0152, N-terminal domain species: Aeropyrum pernix [TaxId: 56636]
Probab=81.98 E-value=0.25 Score=22.58 Aligned_cols=24 Identities=25% Similarity=0.374 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999983999958999999960467
Q 001438 412 IVALVGGSGSGKSTVISLIERFYE 435 (1077)
Q Consensus 412 ~~~ivG~~GsGKStl~~~l~~~~~ 435 (1077)
.+.++||+|+|||++++.+...+.
T Consensus 48 ~l~l~GppGtGKT~l~~~l~~~l~ 71 (287)
T d1w5sa2 48 IYGSIGRVGIGKTTLAKFTVKRVS 71 (287)
T ss_dssp EEECTTCCSSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 899678999899999999999987
|
| >d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Bacterial conjugative coupling protein TrwB species: Escherichia coli [TaxId: 562]
Probab=81.71 E-value=0.45 Score=20.68 Aligned_cols=13 Identities=23% Similarity=0.133 Sum_probs=5.4
Q ss_pred CCEEEEECCCCHH
Q ss_conf 9739998259236
Q 001438 569 GRTTVVVAHRLST 581 (1077)
Q Consensus 569 ~~t~i~itH~~~~ 581 (1077)
|..++++++.++-
T Consensus 305 Gv~~~l~~Qs~~q 317 (433)
T d1e9ra_ 305 GLRVVAGLQSTSQ 317 (433)
T ss_dssp TEEEEEEESCHHH
T ss_pred CCEEEEEECCHHH
T ss_conf 9159999364889
|
| >d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Rep 40 protein helicase domain species: Adeno-associated virus 2, AAV2 [TaxId: 10804]
Probab=81.47 E-value=0.91 Score=18.40 Aligned_cols=33 Identities=21% Similarity=0.380 Sum_probs=27.1
Q ss_pred EECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCC
Q ss_conf 8529969999839999589999999604679841
Q 001438 406 DIPAGKIVALVGGSGSGKSTVISLIERFYEPLSG 439 (1077)
Q Consensus 406 ~i~~g~~~~ivG~~GsGKStl~~~l~~~~~~~~G 439 (1077)
..++-.++.+.||.++|||+++.+|..++ ...|
T Consensus 100 ~~~k~n~~~l~G~~~tGKS~f~~~i~~~l-g~~~ 132 (267)
T d1u0ja_ 100 KFGKRNTIWLFGPATTGKTNIAEAIAHTV-PFYG 132 (267)
T ss_dssp CSTTCCEEEEECSTTSSHHHHHHHHHHHS-SCEE
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHH-CCHH
T ss_conf 99761799998589887789999999983-6202
|
| >d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=81.30 E-value=0.37 Score=21.30 Aligned_cols=62 Identities=18% Similarity=0.202 Sum_probs=30.3
Q ss_pred CCHHHH-HHH--HHHHHHCCCCCEEEEECCCC-----CCCHHHHHHHHHHHHHHHCC------CE-EEEECCCCHHH
Q ss_conf 994899-999--99998513998999827688-----99989899999999987079------73-99982592367
Q 001438 521 LSGGQK-QRI--AISRAIVKNPSILLLDEATS-----ALDAESENSVQEALDRVMVG------RT-TVVVAHRLSTI 582 (1077)
Q Consensus 521 lSgGqk-qri--~lARal~~~~~illlDe~ts-----~lD~~~~~~i~~~i~~~~~~------~t-~i~itH~~~~~ 582 (1077)
.+++.. +++ .+.+|.-..|.|+++||.=+ ..+.+....+.+.+...+++ +. +|..|++.+.+
T Consensus 80 ~~~~~~~~~i~~if~~A~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~tTn~~~~l 156 (246)
T d1d2na_ 80 FSETAKCQAMKKIFDDAYKSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLLIIGTTSRKDVL 156 (246)
T ss_dssp CCHHHHHHHHHHHHHHHHTSSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEEEEEEEESCHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCHHHC
T ss_conf 54211224444456555532422233102566765134544124789999999860777654501455324883225
|
| >d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=81.08 E-value=0.56 Score=19.96 Aligned_cols=27 Identities=30% Similarity=0.430 Sum_probs=14.5
Q ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHH
Q ss_conf 3998999827688999898999999999
Q 001438 537 KNPSILLLDEATSALDAESENSVQEALD 564 (1077)
Q Consensus 537 ~~~~illlDe~ts~lD~~~~~~i~~~i~ 564 (1077)
....+++|||---+ ++.....+.+.+.
T Consensus 120 ~~~~vvl~DeieKa-~~~V~~~lLqild 146 (315)
T d1r6bx3 120 HPHAVLLLDEIEKA-HPDVFNILLQVMD 146 (315)
T ss_dssp CSSEEEEEETGGGS-CHHHHHHHHHHHH
T ss_pred CCCCHHHHCCCCCC-CCHHHHHHHHHHC
T ss_conf 85430221222301-6337665677621
|
| >d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF6 [TaxId: 9606]
Probab=81.07 E-value=0.38 Score=21.21 Aligned_cols=26 Identities=15% Similarity=0.220 Sum_probs=20.8
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 96999983999958999999960467
Q 001438 410 GKIVALVGGSGSGKSTVISLIERFYE 435 (1077)
Q Consensus 410 g~~~~ivG~~GsGKStl~~~l~~~~~ 435 (1077)
.=++.++|++|+|||||++-+.....
T Consensus 12 ~~kIvlvG~~~vGKTSli~rl~~~~~ 37 (173)
T d1e0sa_ 12 EMRILMLGLDAAGKTTILYKLKLGQS 37 (173)
T ss_dssp CEEEEEEEETTSSHHHHHHHTTCCCC
T ss_pred EEEEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 47999999999878999999844888
|
| >d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=81.07 E-value=0.73 Score=19.12 Aligned_cols=55 Identities=20% Similarity=0.275 Sum_probs=27.6
Q ss_pred HHHHHHHHCCCCCEEEEECCCCCCCHHH------HHHHHHHHHHH----H--CCCEEEEECCCCHHH
Q ss_conf 9999998513998999827688999898------99999999987----0--797399982592367
Q 001438 528 RIAISRAIVKNPSILLLDEATSALDAES------ENSVQEALDRV----M--VGRTTVVVAHRLSTI 582 (1077)
Q Consensus 528 ri~lARal~~~~~illlDe~ts~lD~~~------~~~i~~~i~~~----~--~~~t~i~itH~~~~~ 582 (1077)
|-.+..|-...|.|+++||.=+-..... ...+...+... . .+..+|..|++...+
T Consensus 87 ~~~f~~A~~~~p~il~iDeid~l~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvi~tTn~~~~l 153 (258)
T d1e32a2 87 RKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSI 153 (258)
T ss_dssp HHHHHHHHHTCSEEEEESSGGGTCCHHHHCCCTTHHHHHHHHHHHHHTCCCSSCEEEEEEESCGGGS
T ss_pred HHHHHHHHHCCCEEEEEHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCC
T ss_conf 9999999864994998521113225788777706899987750011012346881179757993102
|
| >d2jdia3 c.37.1.11 (A:95-379) Central domain of alpha subunit of F1 ATP synthase {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of alpha subunit of F1 ATP synthase species: Cow (Bos taurus) [TaxId: 9913]
Probab=80.84 E-value=0.29 Score=22.05 Aligned_cols=33 Identities=18% Similarity=0.285 Sum_probs=26.0
Q ss_pred CCCCEEEEECCCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 2000038852996999983999958999999960
Q 001438 399 IFDKFCLDIPAGKIVALVGGSGSGKSTVISLIER 432 (1077)
Q Consensus 399 ~l~~~~~~i~~g~~~~ivG~~GsGKStl~~~l~~ 432 (1077)
+++.+ +.+-+|++.+|+|++|+|||+++.-+..
T Consensus 58 aID~l-~pig~GQr~~If~~~g~GKt~ll~~~~~ 90 (285)
T d2jdia3 58 AVDSL-VPIGRGQRELIIGDRQTGKTSIAIDTII 90 (285)
T ss_dssp HHHHH-SCCBTTCBCEEEESTTSSHHHHHHHHHH
T ss_pred EEECC-CCCCCCCEEEEECCCCCCHHHHHHHHHH
T ss_conf 77434-6766787787656888885899999997
|
| >d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=80.34 E-value=0.44 Score=20.79 Aligned_cols=23 Identities=26% Similarity=0.276 Sum_probs=20.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998399995899999996046
Q 001438 412 IVALVGGSGSGKSTVISLIERFY 434 (1077)
Q Consensus 412 ~~~ivG~~GsGKStl~~~l~~~~ 434 (1077)
.+-+.||+|+||||+++++...+
T Consensus 35 ~lll~Gp~G~GKTt~~~~la~~l 57 (252)
T d1sxje2 35 HLLLYGPNGTGKKTRCMALLESI 57 (252)
T ss_dssp CEEEECSTTSSHHHHHHTHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 59988999998899999999762
|
| >d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpX species: Helicobacter pylori [TaxId: 210]
Probab=80.09 E-value=0.75 Score=19.05 Aligned_cols=31 Identities=23% Similarity=0.434 Sum_probs=23.1
Q ss_pred EEEECCCCCCHHHHHHHHHCCCCCCCCEEEECC
Q ss_conf 999839999589999999604679841799999
Q 001438 413 VALVGGSGSGKSTVISLIERFYEPLSGEILLDG 445 (1077)
Q Consensus 413 ~~ivG~~GsGKStl~~~l~~~~~~~~G~i~~~g 445 (1077)
+-.+||+|+|||-+.+.|...++. .-+.+|-
T Consensus 71 iLfiGPTGvGKTElAk~LA~~~~~--~~ir~D~ 101 (364)
T d1um8a_ 71 ILLIGPTGSGKTLMAQTLAKHLDI--PIAISDA 101 (364)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTTC--CEEEEEG
T ss_pred EEEECCCCCCHHHHHHHHHHHCCC--CEEEHHH
T ss_conf 244189986378999999864435--3311122
|
| >d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=80.01 E-value=0.69 Score=19.32 Aligned_cols=28 Identities=32% Similarity=0.509 Sum_probs=22.1
Q ss_pred EEEEECCCCCCHHHHHHHHH--CCCCCCCC
Q ss_conf 99998399995899999996--04679841
Q 001438 412 IVALVGGSGSGKSTVISLIE--RFYEPLSG 439 (1077)
Q Consensus 412 ~~~ivG~~GsGKStl~~~l~--~~~~~~~G 439 (1077)
++.++|.+|+|||||++-+. ..+.|+-|
T Consensus 4 KivllG~~~vGKTsll~r~~f~~~~~pTiG 33 (200)
T d1zcba2 4 KILLLGAGESGKSTFLKQMRIIHGQDPTKG 33 (200)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHSCCCCSS
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCEEE
T ss_conf 999998999998999998846898887241
|