Citrus Sinensis ID: 001442

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030------1040------1050------1060------1070------

MAAESTHLQQSQLAVILGPDSAPFETLISHLMSTSNEQRSEAELLFNLCKQQDPDSLTLKLAHLLQRSPHPEARAMAAVLLRKLLTRDDSFLWPRLSLHTQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQLIINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEPRFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAIALGGNTIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEHFQKYYDAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMAVGKDKFRDDAKQVMEVLMSLQGSQMETDDPTTSYMLQAWARLCKCLGQDFLPYMSVVMPPLLQSAQLKPDVTITSADSDNEIEDSDDDSMETITLGDKRIGIKTSVLEEKATACNMLCCYADELKEGFFPWIDQVAPTLVPLLKFYFHEEVRKAAVSAMPELLRSAKLAIEKGLAPGRNESYVKQLSDFIIPALVEALHKEPDTEICASMLDSLNECIQISGPLLDEGQVRSIVDEIKQVITASSSRKRERAERAKAEDFDAEESELIKEENEQEEEVFDQVGEILGTLIKTFKAAFLPFFDELSSYLTPMWGKDKTAEERRIAICIFDDVAEQCREAALKYYETYLPFLLEACNDENQDVRQAAVYGLGVCAEFGGSVVKPLVGEALSRLNVVIRHPNALQPENLMAYDNAVSALGKICQFHRDSIDAAQVVPAWLNCLPIKGDLIEAKIVHEQLCSMVERSDSDLLGPNHQYLPKIVSVFAEILCGKDLATEQTLSRIVNLLKQLQQTLPPATLASTWSSLQPQQQLALQSILS

cccccHHHHHHHHHHHccccHHHHHHHHHHHccccHHHHHHHHHHHHHHHHccHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHccHHHHHcHHHHHHHHHHHHHHHccccccccccccccccccccccccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHcccccccccccccccccccccccHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHccHHHHHHHHHcccHHHHHHHHHHHc

ccccccHHHHHHHHHHccccHHHHHHHHHHHccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHcccHHHHHHccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHcHHHHHHHccHHHHHHHHHHHHHcccccccHHHHHcccccccccccccHHHHHHHHHHHHHHcccccccHHHHHHHHHHHccccHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHcHcHHHHHHHHHHHHHHHHHccccEEEEcccccHHHHccccccccEEEccccEEEEEcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHcHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHccccccHHccHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHccccEccccccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHccHHHHHHHHHcccHHHHHHHHHHHc

MAAESTHLQQSQLAVilgpdsapFETLISHLMSTSNEQRSEAELLFNLckqqdpdslTLKLAHLLQRSPHPEARAMAAVLLRKLLtrddsflwprlslhtQSSLKSMLLQSIQLESAKSISKKLCDTVSELAsnilpengwpellpfmfqcvssdsvkLQESAFLIFAQLIINFIQCLtssadrdrFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEPRFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARErapgmmrkLPQFINRLFAILMSMLLDieddplwhsaetededagessnysvgQECLDRLAIAlggntivpvaseqlpaylaapEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLnsfrdphpRVRWAAINAIGQlstdlgpdlqnqfhpqvlpalagamddfqnprvQAHAASAVLnfsenctpeiltpYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEHFQKYYDAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMAVGKDKFRDDAKQVMEVLMSLqgsqmetddpttSYMLQAWARLCKClgqdflpymsvvmppllqsaqlkpdvtitsadsdneiedsdddsmetiTLGDKRIGIKTSVLEEKATACNMLCCYADelkegffpwidqvaptLVPLLKFYFHEEVRKAAVSAMPELLRSAKLAIEkglapgrnesYVKQLSDFIIPALVEALHKEPDTEICASMLDSLNECIqisgplldegqvRSIVDEIKQVITASSSRKRERAERakaedfdaEESELIKEENEQEEEVFDQVGEILGTLIKTFKAAflpffdelssyltpmwgkdktaEERRIAICIFDDVAEQCREAALKYYETYLPFLLEACNDENQDVRQAAVYGLGVcaefggsvvkPLVGEALSRLNVvirhpnalqpenlMAYDNAVSALGKICQFHRDSIDAAQVVPAWlnclpikgdlIEAKIVHEQLCSMVersdsdllgpnhqylpKIVSVFAEILCGKDLATEQTLSRIVNLLKQLQqtlppatlastwsslqPQQQLALQSILS

maaesthlqqSQLAVILGPDSAPFETLISHLMSTSNEQRSEAELLFNLCKQQDPDSLTLKLAHLLQRSPHPEARAMAAVLLRKLLTRDDSFLWPRLSLHTQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQLIINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEPRFLRRQLVDVVGSMLQIAEAesleegtrHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAIALGGNTIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEHFQKYYDAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMAVGKDKFRDDAKQVMEVLMSLQGSQMETDDPTTSYMLQAWARLCKCLGQDFLPYMSVVMPPLLQSAQLKPDVTITSadsdneiedsdddsmetitlgdkrigikTSVLEEKATACNMLCCYADELKEGFFPWIDQVAPTLVPLLKFYFHEEVRKAAVSAMPELLRSAKLAIEKGLAPGRNESYVKQLSDFIIPALVEALHKEPDTEICASMLDSLNECIQISGPLLDEGQVRSIVDEIKQvitasssrkreraerakaedfdaeeselikeeneqeeEVFDQVGEILGTLIKTFKAAFLPFFDELSSYLTPMWGKDKTAEERRIAICIFDDVAEQCREAALKYYETYLPFLLEACNDENQDVRQAAVYGLGVCAEFGGSVVKPLVGEALSRLNVVIRHPNALQPENLMAYDNAVSALGKICQFHRDSIDAAQVVPAWLNCLPIKGDLIEAKIVHEQLCSMVERSDSDLLGPNHQYLPKIVSVFAEILCGKDLATEQTLSRIVNLLKQLQQTLPPATLASTWSSLQPQQQLALQSILS

MAAESTHLQQSQLAVILGPDSAPFETLISHLMSTSNEQRSEAELLFNLCKQQDPDSLTLKLAHLLQRSPHPEARAMAAVLLRKLLTRDDSFLWPRLSLHTQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQLIINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNeataqealellielaGTEPRFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAIALGGNTIVPVASEQLPAYLAAPEWqkhhaalialaqiaEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEHFQKYYDAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMAVGKDKFRDDAKQVMEVLMSLQGSQMETDDPTTSYMLQAWARLCKCLGQDFLPYMSVVMPPLLQSAQLKPDVTITSAdsdneiedsdddsmeTITLGDKRIGIKTSVLEEKATACNMLCCYADELKEGFFPWIDQVAPTLVPLLKFYFHEEVRKAAVSAMPELLRSAKLAIEKGLAPGRNESYVKQLSDFIIPALVEALHKEPDTEICASMLDSLNECIQISGPLLDEGQVRSIVDEIKQVITasssrkreraerakaedfdaeeselikeeneqeeeVFDQVGEILGTLIKTFKAAFLPFFDELSSYLTPMWGKDKTAEERRIAICIFDDVAEQCREAALKYYETYLPFLLEACNDENQDVRQAAVYGLGVCAEFGGSVVKPLVGEALSRLNVVIRHPNALQPENLMAYDNAVSALGKICQFHRDSIDAAQVVPAWLNCLPIKGDLIEAKIVHEQLCSMVERSDSDLLGPNHQYLPKIVSVFAEILCGKDLATEQTLSRIVNLLKQLQQTLPPATLASTWsslqpqqqlalqsils

**************VIL**************************LLFNLCK******LTLKLAHLL********RAMAAVLLRKLLTRDDSFLWPRLSLHTQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQLIINFIQCLTSSADRDRFQDLLPLMMRTLTESL*****ATAQEALELLIELAGTEPRFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWH***************SVGQECLDRLAIALGGNTIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEHFQKYYDAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMAVGKDKFRDDA*QVMEVL**************TSYMLQAWARLCKCLGQDFLPYMSVVMPPLLQ*****************************ITLGDKRIGIKTSVLEEKATACNMLCCYADELKEGFFPWIDQVAPTLVPLLKFYFHEEVRKAAVSAMPELLRSAKLAIEKGLAPGRNESYVKQLSDFIIPALVEALHKEPDTEICASMLDSLNECIQISGPLLDEGQVRSIVDEIKQVI************************************VFDQVGEILGTLIKTFKAAFLPFFDELSSYLTPMWGKDKTAEERRIAICIFDDVAEQCREAALKYYETYLPFLLEACNDENQDVRQAAVYGLGVCAEFGGSVVKPLVGEALSRLNVVIRHPNALQPENLMAYDNAVSALGKICQFHRDSIDAAQVVPAWLNCLPIKGDLIEAKIVHEQLCSMVERSDSDLLGPNHQYLPKIVSVFAEILCGKDLATEQTLSRIVNLLKQLQQTLP************************

*****************GPDSAPFETLISHLMSTSNEQRSEAELLFNLCKQQDPDSLTLKLAHLLQRSPHPEARAMAAVLLRKLLTRDDSFLWPRLSLHTQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPENGWPELLPFMF**********QESAFLIFAQLIINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEPRFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARER****MRKLPQFINRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAIALGGNTIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEHFQKYYDAVMPFLKAILV*********LRAKSMECISLVGMAVGKDKFRDDAKQVMEVLMSLQGS****DDPTTSYMLQAWARLCKCLGQDFLPYMSVVMPPLLQSAQLKPDVTITSADSDNEIEDSDDDSMETITLGDKRIGIKTSVLEEKATACNMLCCYADELKEGFFPWIDQVAPTLVPLLKFYFHEEVRKAAVSAMPELLRSAKLAIEKGLAPGRNESYVKQLSDFIIPALVEALHKEPDTEICASMLDSLNECIQISGPLLDEGQVRSIVDEIKQVITASSSRKRERAERAKAEDFDAEESELIKEENEQEEEVFDQVGEILGTLIKTFKAAFLPFFDELSSYLTPMWGKDKTAEERRIAICIFDDVAEQCREAALKYYETYLPFLLEACNDENQDVRQAAVYGLGVCAEFGGSVVKPLVGEALSRLNVVIRHPNALQPENLMAYDNAVSALGKICQFHRDSIDAAQVVPAWLNCLPIKGDLIEAKIVHEQLCSMVERSDSDLLGPNHQYLPKIVSVFAEILCGKDLATEQTLSRIVNLLKQLQQTLPPATLASTWSSLQPQQQLALQSILS

**********SQLAVILGPDSAPFETLISHLMSTSNEQRSEAELLFNLCKQQDPDSLTLKLAHLLQRSPHPEARAMAAVLLRKLLTRDDSFLWPRLSLHTQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQLIINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEPRFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSA**************VGQECLDRLAIALGGNTIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEHFQKYYDAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMAVGKDKFRDDAKQVMEVLMSLQGSQMETDDPTTSYMLQAWARLCKCLGQDFLPYMSVVMPPLLQSAQLKPDVTITSADSDNEIEDSDDDSMETITLGDKRIGIKTSVLEEKATACNMLCCYADELKEGFFPWIDQVAPTLVPLLKFYFHEEVRKAAVSAMPELLRSAKLAIEKGLAPGRNESYVKQLSDFIIPALVEALHKEPDTEICASMLDSLNECIQISGPLLDEGQVRSIVDEIKQVIT**********************************EVFDQVGEILGTLIKTFKAAFLPFFDELSSYLTPMWGKDKTAEERRIAICIFDDVAEQCREAALKYYETYLPFLLEACNDENQDVRQAAVYGLGVCAEFGGSVVKPLVGEALSRLNVVIRHPNALQPENLMAYDNAVSALGKICQFHRDSIDAAQVVPAWLNCLPIKGDLIEAKIVHEQLCSMVERSDSDLLGPNHQYLPKIVSVFAEILCGKDLATEQTLSRIVNLLKQLQQTLPPATLAS******************

*********Q*Q*AVILGPDSAPFETLISHLMSTSNEQRSEAELLFNLCKQQDPDSLTLKLAHLLQRSPHPEARAMAAVLLRKLLTRDDSFLWPRLSLHTQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQLIINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEPRFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSA********ESSNYSVGQECLDRLAIALGGNTIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEHFQKYYDAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMAVGKDKFRDDAKQVMEVLMSLQGSQMETDDPTTSYMLQAWARLCKCLGQDFLPYMSVVMPPLLQSAQLKPDVTITSADSDNEIEDSDDDSMETITLGDKRIGIKTSVLEEKATACNMLCCYADELKEGFFPWIDQVAPTLVPLLKFYFHEEVRKAAVSAMPELLRSAKLAIEKGLAPGRNESYVKQLSDFIIPALVEALHKEPDTEICASMLDSLNECIQISGPLLDEGQVRSIVDEIKQVITASSSRKRERAERAK*EDFDAEESELIKEENEQEEEVFDQVGEILGTLIKTFKAAFLPFFDELSSYLTPMWGKDKTAEERRIAICIFDDVAEQCREAALKYYETYLPFLLEACNDENQDVRQAAVYGLGVCAEFGGSVVKPLVGEALSRLNVVIRHPNALQPENLMAYDNAVSALGKICQFHRDSIDAAQVVPAWLNCLPIKGDLIEAKIVHEQLCSMVERSDSDLLGPNHQYLPKIVSVFAEILCGKDLATEQTLSRIVNLLKQLQQTLPPATLASTWSSLQPQQQLALQSILS

oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii

ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii

xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx

MAAESTHLQQSQLAVILGPDSAPFETLISHLMSTSNEQRSEAELLFNLCKQQDPDSLTLKLAHLLQRSPHPEARAMAAVLLRKLLTRDDSFLWPRLSLHTQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQLIINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEPRFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAIALGGNTIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEHFQKYYDAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMAVGKDKFRDDAKQVMEVLMSLQGSQMETDDPTTSYMLQAWARLCKCLGQDFLPYMSVVMPPLLQSAQLKPDVTITSADSDNEIEDSDDDSMETITLGDKRIGIKTSVLEEKATACNMLCCYADELKEGFFPWIDQVAPTLVPLLKFYFHEEVRKAAVSAMPELLRSAKLAIEKGLAPGRNESYVKQLSDFIIPALVEALHKEPDTEICASMLDSLNECIQISGPLLDEGQVRSIVDEIKQVITASSSRKRERAERAKxxxxxxxxxxxxxxxxxxxxxVFDQVGEILGTLIKTFKAAFLPFFDELSSYLTPMWGKDKTAEERRIAICIFDDVAEQCREAALKYYETYLPFLLEACNDENQDVRQAAVYGLGVCAEFGGSVVKPLVGEALSRLNVVIRHPNALQPENLMAYDNAVSALGKICQFHRDSIDAAQVVPAWLNCLPIKGDLIEAKIVHEQLCSMVERSDSDLLGPNHQYLPKIVSVFAEILCGKDLATEQTLSRIVNLLKQLQQTLPPATLASTWSSLQPQQQLALQSILS

no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		1076	2.2.26 [Sep-21-2011]
O00410		1097	Importin-5 OS=Homo sapien	yes	no	0.952	0.934	0.372	0.0
Q8BKC5		1097	Importin-5 OS=Mus musculu	yes	no	0.952	0.934	0.371	0.0
O60518		1105	Ran-binding protein 6 OS=	no	no	0.949	0.924	0.349	0.0
Q8BIV3		1105	Ran-binding protein 6 OS=	no	no	0.953	0.928	0.352	0.0
O74476		1095	Importin subunit beta-3 O	yes	no	0.957	0.940	0.336	1e-163
P32337		1089	Importin subunit beta-3 O	yes	no	0.878	0.867	0.283	8e-97
Q54EW3		1067	Probable importin-5 homol	yes	no	0.894	0.901	0.253	6e-92
O60100		1067	Probable importin subunit	no	no	0.876	0.883	0.208	2e-40
P40069		1113	Importin subunit beta-4 O	no	no	0.880	0.850	0.218	1e-39
Q8TEX9		1081	Importin-4 OS=Homo sapien	no	no	0.763	0.759	0.231	7e-30

>sp\|O00410\|IPO5_HUMAN Importin-5 OS=Homo sapiens GN=IPO5 PE=1 SV=4	Back alignment and function desciption

 Score =  708 bits (1827), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 415/1113 (37%), Positives = 639/1113 (57%), Gaps = 88/1113 (7%)

Query: 24   FETLISHLMSTSNEQRSEAELLFNLCKQQDPDSLTLKLAHLLQRSPHPEARAMAAVLLRK 83
            F  L+ +L+S  N  R +AE  +     Q    +T  L  +   +   EAR MAAVLLR+
Sbjct: 11   FYLLLGNLLSPDNVVRKQAEETYENIPGQS--KITFLLQAIRNTTAAEEARQMAAVLLRR 68

Query: 84   LLTRDDSFLWPRLSLHTQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPENG--- 140
            LL+     ++P L    Q+++KS LL  IQ+E+  S+ KK+CD  +ELA N++ E+G   
Sbjct: 69   LLSSAFDEVYPALPSDVQTAIKSELLMIIQMETQSSMRKKVCDIAAELARNLIDEDGNNQ 128

Query: 141  WPELLPFMFQCVSSDSVKLQESAFLIFAQLIINF---------------IQCL------- 178
            WPE L F+F  VSS +V L+E+A  IF      F               +QC+       
Sbjct: 129  WPEGLKFLFDSVSSQNVGLREAALHIFWNFPGIFGNQQQHYLDVIKRMLVQCMQDQEHPS 188

Query: 179  --TSSADR---------------DRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELA 221
              T SA                   F DLLP  ++ + +S    +++     L+ L+E+A
Sbjct: 189  IRTLSARATAAFILANEHNVALFKHFADLLPGFLQAVNDSCYQNDDSV----LKSLVEIA 244

Query: 222  GTEPRFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFI 281
             T P++LR  L   +   L++    SL    R LA+E ++TL+E    A  M+RK    +
Sbjct: 245  DTVPKYLRPHLEATLQLSLKLCGDTSLNNMQRQLALEVIVTLSET---AAAMLRKHTNIV 301

Query: 282  NRLFAILMSMLLDIEDDPLWHSA-ETEDEDAGESSNYSVGQECLDRLAIALGGNTIVPVA 340
             +    +++M++D+E+D  W +A E ED+D    SN   G+  LDR+A  LGG  ++P+ 
Sbjct: 302  AQTIPQMLAMMVDLEEDEDWANADELEDDDF--DSNAVAGESALDRMACGLGGKLVLPMI 359

Query: 341  SEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAA 400
             E +   L  P+W+  HA L+AL+ I EGC + M   L ++++ VL   +DPHPRVR+AA
Sbjct: 360  KEHIMQMLQNPDWKYRHAGLMALSAIGEGCHQQMEGILNEIVNFVLLFLQDPHPRVRYAA 419

Query: 401  INAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILT 460
             NA+GQ++TD  P  Q +FH +V+ AL   M+D  N RVQAHAA+A++NF+E+C   +L 
Sbjct: 420  CNAVGQMATDFAPGFQKKFHEKVIAALLQTMEDQGNQRVQAHAAAALINFTEDCPKSLLI 479

Query: 461  PYLDGIVS--------KLLVLLQNGKQMVQEGALTALASVADSSQEHFQKYYDAVMPFLK 512
            PYLD +V         KL  L+Q G ++V E  +T++ASVAD+++E F  YYD  MP LK
Sbjct: 480  PYLDNLVKHLHSIMVLKLQELIQKGTKLVLEQVVTSIASVADTAEEKFVPYYDLFMPSLK 539

Query: 513  AILVNATDKSNRMLRAKSMECISLVGMAVGKDKFRDDAKQVMEVLMSLQG--SQMETDDP 570
             I+ NA  K  R+LR K++ECISL+G+AVGK+KF  DA  VM++L+  Q   + ME DDP
Sbjct: 540  HIVENAVQKELRLLRGKTIECISLIGLAVGKEKFMQDASDVMQLLLKTQTDFNDMEDDDP 599

Query: 571  TTSYMLQAWARLCKCLGQDFLPYMSVVMPPLLQSAQLKPDVTITSADSDNEIEDSDDDSM 630
              SYM+ AWAR+CK LG++F  Y+ VVM PL+++A +KP+V +   D+ +    SDDD  
Sbjct: 600  QISYMISAWARMCKILGKEFQQYLPVVMGPLMKTASIKPEVALL--DTQDMENMSDDDGW 657

Query: 631  ETITLGDKR-IGIKTSVLEEKATACNMLCCYADELKEGFFPWIDQVAPTLVPLLKFYFHE 689
            E + LGD++  GIKT+ LEEK+TAC ML CYA ELKEGF  + +QV   +VPLLKFYFH+
Sbjct: 658  EFVNLGDQQSFGIKTAGLEEKSTACQMLVCYAKELKEGFVEYTEQVVKLMVPLLKFYFHD 717

Query: 690  EVRKAAVSAMPELLRSAKLAIEKGLAPGRNESYVKQLSDFIIPALVEALHKEPDTEICAS 749
             VR AA  +MP LL  A++         R   Y+ Q+  F+  AL++A+  EPD+++ + 
Sbjct: 718  GVRVAAAESMPLLLECARV---------RGPEYLTQMWHFMCDALIKAIGTEPDSDVLSE 768

Query: 750  MLDSLNECIQISGP-LLDEGQVRSIVDEIKQVITASSSRKRERAERAKAEDFDAEESELI 808
            ++ S  +CI++ G   L+      +   +K  +      +  R  + + ED+D +  E +
Sbjct: 769  IMHSFAKCIEVMGDGCLNNEHFEELGGILKAKLEEHFKNQELRQVKRQDEDYDEQVEESL 828

Query: 809  KEENEQEEEVFDQVGEILGTLIKTFKAAFLPFFDELSSYLTPMWGKDKTAEERRIAICIF 868
            ++E++ +  +  +V +IL ++  ++K   LP+F++L   +  +    +   +R+  +CIF
Sbjct: 829  QDEDDNDVYILTKVSDILHSIFSSYKEKVLPWFEQLLPLIVNLICPHRPWPDRQWGLCIF 888

Query: 869  DDVAEQCREAALKYYETYLPFLLEACNDENQDVRQAAVYGLGVCAEFGGSVVKPLVGEAL 928
            DDV E C  A+ KY E +L  +L+   D + +VRQAA YGLGV A++GG   +P   EAL
Sbjct: 889  DDVIEHCSPASFKYAEYFLRPMLQYVCDNSPEVRQAAAYGLGVMAQYGGDNYRPFCTEAL 948

Query: 929  SRLNVVIRHPNALQPENLMAYDNAVSALGKICQFHRDSIDAAQVVPAWLNCLPIKGDLIE 988
              L  VI+  ++   EN+ A +N +SA+GKI +F  D ++  +V+P WL+ LP+  D  E
Sbjct: 949  PLLVRVIQSADSKTKENVNATENCISAVGKIMKFKPDCVNVEEVLPHWLSWLPLHEDKEE 1008

Query: 989  AKIVHEQLCSMVERSDSDLLGPNHQYLPKIVSVFAEILCGKDLATEQTLS-RIVNLLKQL 1047
            A      LC ++E +   +LGPN+  LPKI S+ AE    + +  E   + R+ N+++Q+
Sbjct: 1009 AVQTFNYLCDLIESNHPIVLGPNNTNLPKIFSIIAEGEMHEAIKHEDPCAKRLANVVRQV 1068

Query: 1048 QQTLPPATLASTWS----SLQPQQQLALQSILS 1076
            Q      T    W+     L P+QQ A+Q +L+
Sbjct: 1069 Q------TSGGLWTECIAQLSPEQQAAIQELLN 1095

Functions in nuclear protein import as nuclear transport receptor. Serves as receptor for nuclear localization signals (NLS) in cargo substrates. Is thought to mediate docking of the importin/substrate complex to the nuclear pore complex (NPC) through binding to nucleoporin and the complex is subsequently translocated through the pore by an energy requiring, Ran-dependent mechanism. At the nucleoplasmic side of the NPC, Ran binds to the importin, the importin/substrate complex dissociates and importin is re-exported from the nucleus to the cytoplasm where GTP hydrolysis releases Ran. The directionality of nuclear import is thought to be conferred by an asymmetric distribution of the GTP- and GDP-bound forms of Ran between the cytoplasm and nucleus (By similarity). Mediates the nuclear import of ribosomal proteins RPL23A, RPS7 and RPL5. Binds to a beta-like import receptor binding (BIB) domain of RPL23A. In vitro, mediates nuclear import of H2A, H2B, H3 and H4 histones. In case of HIV-1 infection, binds and mediates the nuclear import of HIV-1 Rev.
Homo sapiens (taxid: 9606)

>sp\|Q8BKC5\|IPO5_MOUSE Importin-5 OS=Mus musculus GN=Ipo5 PE=1 SV=3	Back alignment and function description

>sp\|O60518\|RNBP6_HUMAN Ran-binding protein 6 OS=Homo sapiens GN=RANBP6 PE=1 SV=2	Back alignment and function description

>sp\|Q8BIV3\|RNBP6_MOUSE Ran-binding protein 6 OS=Mus musculus GN=Ranbp6 PE=2 SV=3	Back alignment and function description

>sp\|O74476\|IMB3_SCHPO Importin subunit beta-3 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=sal3 PE=3 SV=1	Back alignment and function description

>sp\|P32337\|IMB3_YEAST Importin subunit beta-3 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=PSE1 PE=1 SV=2	Back alignment and function description

>sp\|Q54EW3\|IPO5_DICDI Probable importin-5 homolog OS=Dictyostelium discoideum GN=DDB_G0291650 PE=3 SV=1	Back alignment and function description

>sp\|O60100\|IMB4_SCHPO Probable importin subunit beta-4 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=kap123 PE=3 SV=1	Back alignment and function description

>sp\|P40069\|IMB4_YEAST Importin subunit beta-4 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=KAP123 PE=1 SV=1	Back alignment and function description

>sp\|Q8TEX9\|IPO4_HUMAN Importin-4 OS=Homo sapiens GN=IPO4 PE=1 SV=2	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		1076
225435754		1116	PREDICTED: importin-5 [Vitis vinifera]	1.0	0.964	0.877	0.0
224056978		1114	predicted protein [Populus trichocarpa]	0.997	0.963	0.867	0.0
224075980		1114	predicted protein [Populus trichocarpa]	0.997	0.963	0.871	0.0
449463855		1116	PREDICTED: LOW QUALITY PROTEIN: importin	1.0	0.964	0.856	0.0
356525274		1114	PREDICTED: importin-5-like [Glycine max]	0.993	0.959	0.860	0.0
297812163		1116	EMB2734 [Arabidopsis lyrata subsp. lyrat	1.0	0.964	0.817	0.0
15241189		1116	armadillo/beta-catenin-like repeat-conta	1.0	0.964	0.811	0.0
255582566		1095	importin beta-3, putative [Ricinus commu	0.957	0.940	0.848	0.0
357518889		1117	Ran-binding protein [Medicago truncatula	1.0	0.963	0.851	0.0
225441589		1116	PREDICTED: importin-5 [Vitis vinifera]	1.0	0.964	0.834	0.0

>gi\|225435754\|ref\|XP_002285720.1\| PREDICTED: importin-5 [Vitis vinifera]	Back alignment and taxonomy information

 Score = 1943 bits (5033), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 978/1115 (87%), Positives = 1037/1115 (93%), Gaps = 39/1115 (3%)

Query: 1    MAAESTHLQQSQLAVILGPDSAPFETLISHLMSTSNEQRSEAELLFNLCKQQDPDSLTLK 60
            M  EST LQQ+QLA ILGPD  PFETLISHLMSTSN+QRS AELLFNLCKQ DP+SL+LK
Sbjct: 1    MDPESTQLQQAQLAAILGPDPGPFETLISHLMSTSNDQRSHAELLFNLCKQSDPNSLSLK 60

Query: 61   LAHLLQRSPHPEARAMAAVLLRKLLTRDDSFLWPRLSLHTQSSLKSMLLQSIQLESAKSI 120
            LAHLLQ SPH EARAMAA+LLRK LTRDDS+LWPRLS  TQSSLKS+LL  IQ E AKSI
Sbjct: 61   LAHLLQFSPHIEARAMAAILLRKQLTRDDSYLWPRLSASTQSSLKSILLGCIQREDAKSI 120

Query: 121  SKKLCDTVSELASNILPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQL---------- 170
            SKKLCDTVSELAS+ILPENGWPELLPFMFQCV+SDS KLQE+AFLIFAQL          
Sbjct: 121  SKKLCDTVSELASSILPENGWPELLPFMFQCVTSDSAKLQEAAFLIFAQLAQYIGETLVP 180

Query: 171  ----------------------------IINFIQCLTSSADRDRFQDLLPLMMRTLTESL 202
                                         INFIQCL+SSADRDRFQDLLP MMRTLTE+L
Sbjct: 181  HIKHLHSVFLQSLTSSSSSDVKIAALSAAINFIQCLSSSADRDRFQDLLPAMMRTLTEAL 240

Query: 203  NNGNEATAQEALELLIELAGTEPRFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVIT 262
            N G EATAQEALELLIELAGTEPRFLRRQLVDVVGSMLQIAEAESLEEGTRHLA+EFVIT
Sbjct: 241  NCGQEATAQEALELLIELAGTEPRFLRRQLVDVVGSMLQIAEAESLEEGTRHLAVEFVIT 300

Query: 263  LAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQE 322
            LAEARERAPGMMRKLPQFI+RLFAILM MLLDIEDDP WHSA++EDEDAGESSNYSVGQE
Sbjct: 301  LAEARERAPGMMRKLPQFISRLFAILMKMLLDIEDDPAWHSADSEDEDAGESSNYSVGQE 360

Query: 323  CLDRLAIALGGNTIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVL 382
            CLDRLAI+LGGNTIVPVASE LPAYLAAPEWQKHHAALIALAQIAEGC+KVM+KNLEQV+
Sbjct: 361  CLDRLAISLGGNTIVPVASELLPAYLAAPEWQKHHAALIALAQIAEGCSKVMIKNLEQVV 420

Query: 383  SMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAH 442
            +MVLN+F+DPHPRVRWAAINAIGQLSTDLGPDLQ Q+H +VLPALA +MDDFQNPRVQAH
Sbjct: 421  TMVLNTFQDPHPRVRWAAINAIGQLSTDLGPDLQVQYHQRVLPALAASMDDFQNPRVQAH 480

Query: 443  AASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEHFQK 502
            AASAVLNFSENCTP+ILTPYLDGIV KLLVLLQNGKQMVQEGALTALASVADSSQEHFQK
Sbjct: 481  AASAVLNFSENCTPDILTPYLDGIVGKLLVLLQNGKQMVQEGALTALASVADSSQEHFQK 540

Query: 503  YYDAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMAVGKDKFRDDAKQVMEVLMSLQG 562
            YYDAVMP+LKAIL+NATDKSNRMLRAK+MECISLVGMAVGKDKFRDDAKQVMEVLMSLQG
Sbjct: 541  YYDAVMPYLKAILMNATDKSNRMLRAKAMECISLVGMAVGKDKFRDDAKQVMEVLMSLQG 600

Query: 563  SQMETDDPTTSYMLQAWARLCKCLGQDFLPYMSVVMPPLLQSAQLKPDVTITSADSDNEI 622
            SQMETDDPTTSYMLQAWARLCKCLGQDFLPYMSVVMPPLLQSAQLKPDVTITSADSDNEI
Sbjct: 601  SQMETDDPTTSYMLQAWARLCKCLGQDFLPYMSVVMPPLLQSAQLKPDVTITSADSDNEI 660

Query: 623  EDSDDDSMETITLGDKRIGIKTSVLEEKATACNMLCCYADELKEGFFPWIDQVAPTLVPL 682
            E+SDD+SMETITLGDKRIGIKTSVLEEKATACNMLCCYADELKEGFFPWIDQVAPTLVPL
Sbjct: 661  EESDDESMETITLGDKRIGIKTSVLEEKATACNMLCCYADELKEGFFPWIDQVAPTLVPL 720

Query: 683  LKFYFHEEVRKAAVSAMPELLRSAKLAIEKGLAPGRNESYVKQLSDFIIPALVEALHKEP 742
            LKFYFHEEVRKAAVSAMPELLRSAKLA+EKGLA GRNESYVKQLSD+IIPALVEALHKEP
Sbjct: 721  LKFYFHEEVRKAAVSAMPELLRSAKLAVEKGLAQGRNESYVKQLSDYIIPALVEALHKEP 780

Query: 743  DTEICASMLDSLNECIQISGPLLDEGQVRSIVDEIKQVITASSSRKRERAERAKAEDFDA 802
            DTEICASMLD+LNEC+QISG +LDE QVRSIVDEIKQVITASSSRKRERAER KAEDFDA
Sbjct: 781  DTEICASMLDALNECLQISGRILDESQVRSIVDEIKQVITASSSRKRERAERTKAEDFDA 840

Query: 803  EESELIKEENEQEEEVFDQVGEILGTLIKTFKAAFLPFFDELSSYLTPMWGKDKTAEERR 862
            EE EL+KEENEQEEEVFDQVGEILGTLIKTFKA+FLPFFDEL+SYLTPMWGKDKTAEERR
Sbjct: 841  EEGELLKEENEQEEEVFDQVGEILGTLIKTFKASFLPFFDELASYLTPMWGKDKTAEERR 900

Query: 863  IAICIFDDVAEQCREAALKYYETYLPFLLEACNDENQDVRQAAVYGLGVCAEFGGSVVKP 922
            IAICIFDDVAEQCREAALKYY+TYLPFLLEACND+N DVRQAAVYGLGVCAEFGG+  KP
Sbjct: 901  IAICIFDDVAEQCREAALKYYDTYLPFLLEACNDDNSDVRQAAVYGLGVCAEFGGAAFKP 960

Query: 923  LVGEALSRLNVVIRHPNALQPENLMAYDNAVSALGKICQFHRDSIDAAQVVPAWLNCLPI 982
            LVGEALSRLNVVIRHPNALQP+N+MAYDNAVSALGKICQFHRDSID+AQVVPAWL+CLPI
Sbjct: 961  LVGEALSRLNVVIRHPNALQPDNVMAYDNAVSALGKICQFHRDSIDSAQVVPAWLSCLPI 1020

Query: 983  KGDLIEAKIVHEQLCSMVERSDSDLLGPNHQYLPKIVSVFAEILC-GKDLATEQTLSRIV 1041
            KGDLIEAK+VH+QLCSMVE SD +LLGPN+QYLP+IV+VFAE+LC GKDLATEQT+SR++
Sbjct: 1021 KGDLIEAKVVHDQLCSMVEMSDRELLGPNNQYLPQIVAVFAEVLCAGKDLATEQTISRMI 1080

Query: 1042 NLLKQLQQTLPPATLASTWSSLQPQQQLALQSILS 1076
            NLL+QLQQTLPP+TLASTWSSLQPQQQLALQSILS
Sbjct: 1081 NLLRQLQQTLPPSTLASTWSSLQPQQQLALQSILS 1115

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|224056978\|ref\|XP_002299105.1\| predicted protein [Populus trichocarpa] gi\|222846363\|gb\|EEE83910.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|224075980\|ref\|XP_002304857.1\| predicted protein [Populus trichocarpa] gi\|222842289\|gb\|EEE79836.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|449463855\|ref\|XP_004149646.1\| PREDICTED: LOW QUALITY PROTEIN: importin-5-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|356525274\|ref\|XP_003531251.1\| PREDICTED: importin-5-like [Glycine max]	Back alignment and taxonomy information

>gi\|297812163\|ref\|XP_002873965.1\| EMB2734 [Arabidopsis lyrata subsp. lyrata] gi\|297319802\|gb\|EFH50224.1\| EMB2734 [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

>gi\|15241189\|ref\|NP_197483.1\| armadillo/beta-catenin-like repeat-containing protein [Arabidopsis thaliana] gi\|14334742\|gb\|AAK59549.1\| unknown protein [Arabidopsis thaliana] gi\|15293299\|gb\|AAK93760.1\| unknown protein [Arabidopsis thaliana] gi\|332005369\|gb\|AED92752.1\| armadillo/beta-catenin-like repeat-containing protein [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|255582566\|ref\|XP_002532066.1\| importin beta-3, putative [Ricinus communis] gi\|223528270\|gb\|EEF30321.1\| importin beta-3, putative [Ricinus communis]	Back alignment and taxonomy information

>gi\|357518889\|ref\|XP_003629733.1\| Ran-binding protein [Medicago truncatula] gi\|355523755\|gb\|AET04209.1\| Ran-binding protein [Medicago truncatula]	Back alignment and taxonomy information

>gi\|225441589\|ref\|XP_002281591.1\| PREDICTED: importin-5 [Vitis vinifera]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		1076
TAIR\|locus:2183219		1116	emb2734 "AT5G19820" [Arabidops	0.963	0.929	0.684	0.0
MGI\|MGI:1917822		1097	Ipo5 "importin 5" [Mus musculu	0.781	0.766	0.366	1e-169
UNIPROTKB\|O00410		1097	IPO5 "Importin-5" [Homo sapien	0.781	0.766	0.366	1e-169
UNIPROTKB\|F1MPE5		1110	IPO5 "Uncharacterized protein"	0.781	0.757	0.362	3.8e-168
RGD\|1308715		1097	Ipo5 "importin 5" [Rattus norv	0.781	0.766	0.363	6.3e-168
UNIPROTKB\|F1RP44		1067	IPO5 "Uncharacterized protein"	0.781	0.788	0.367	1.3e-167
UNIPROTKB\|H0Y8C6		1099	IPO5 "Importin-5" [Homo sapien	0.781	0.765	0.366	2.7e-167
UNIPROTKB\|E2RF06		1089	IPO5 "Uncharacterized protein"	0.781	0.772	0.365	3.1e-166
UNIPROTKB\|O60518		1105	RANBP6 "Ran-binding protein 6"	0.782	0.761	0.350	5.6e-154
MGI\|MGI:2683212		1105	Ranbp6 "RAN binding protein 6"	0.782	0.761	0.351	9.1e-154

TAIR\|locus:2183219 emb2734 "AT5G19820" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 3616 (1278.0 bits), Expect = 0., P = 0.
 Identities = 728/1063 (68%), Positives = 831/1063 (78%)

Query:    13 LAVILGPDSAPFETLISHLMSTSN--EQRSEAELLFNLCKQQDPDSLTLKLAHLLQRS-- 68
             LA    PD+   +  ++HL+  S   E R+ A +L      +D   L  +L+   Q S  
Sbjct:    48 LAKQSNPDTLSLK--LAHLLQLSPHPEGRAMAAVLLRKLLTRDDAYLWPRLSLSTQSSLK 105

Query:    69 -------PHPEARAMAAVLLRKLLTRDDSFL----WPRLSLHTQSSLKSMLLQSIQLESA 117
                     H EA++++  +   +       L    WP L       + S+    +Q ESA
Sbjct:   106 SSMLYCIQHEEAKSISKKICDTVSELASGILPENGWPELLPFVFQCVTSVT-PKLQ-ESA 163

Query:   118 KSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQLIINFIQC 177
               I  +L   V E    + P     EL     QC+SS+S         + A  +I+F+QC
Sbjct:   164 FLILAQLSQYVGE---TLTPHI--KELHGVFLQCLSSNSASSDVKIAALNA--VISFVQC 216

Query:   178 LTSSADRDRFQDLLPLMMRTLTESLNNGNXXXXXXXXXXXXXXXGTEPRFLRRQLVDVVG 237
             L +S +RDRFQD+LP M+RTLTESLNNGN               GTEPRFLRRQLVD+VG
Sbjct:   217 LANSTERDRFQDVLPAMIRTLTESLNNGNEATAQEALELLIELAGTEPRFLRRQLVDIVG 276

Query:   238 SMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIED 297
             SMLQIAEA+SLEE TRHLAIEF++TLAEARERAPGM+RKLPQFI+RLFA+LM ML DIED
Sbjct:   277 SMLQIAEADSLEESTRHLAIEFLVTLAEARERAPGMVRKLPQFIDRLFAVLMKMLEDIED 336

Query:   298 DPLWHSAETEDEDAGESSNYSVGQECLDRLAIALGGNTIVPVASEQLPAYLAAPEWXXXX 357
             DP W+SAETEDEDAGE+SNYS+GQECLDRLAI+LGGNTIVPVA +Q  AYLAA EW    
Sbjct:   337 DPAWYSAETEDEDAGETSNYSMGQECLDRLAISLGGNTIVPVAYQQFSAYLAASEWQKHH 396

Query:   358 XXXXXXXXXXEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQN 417
                       EGC+KVM+KNL+QV+SMVL+ F+ PHPRVRWAAINAIGQLSTDLGPDLQN
Sbjct:   397 ASLIALAQIAEGCSKVMIKNLDQVVSMVLSQFQSPHPRVRWAAINAIGQLSTDLGPDLQN 456

Query:   418 QFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNG 477
             Q H +VLPALA AMDDFQNPRVQAHAASAVLNFSENCTPEIL+PYLDG+VSKLLVLLQNG
Sbjct:   457 QHHERVLPALAAAMDDFQNPRVQAHAASAVLNFSENCTPEILSPYLDGVVSKLLVLLQNG 516

Query:   478 KQMVQEGALTALASVADSSQEHFQKYYDAVMPFLKAILVNATDKSNRMLRAKSMECISLV 537
             KQMVQEGALTALASVADSSQEHFQKYYD VMP+LK IL+NATDKS RMLRAKSMECISLV
Sbjct:   517 KQMVQEGALTALASVADSSQEHFQKYYDTVMPYLKTILMNATDKSKRMLRAKSMECISLV 576

Query:   538 GMAVGKDKFRDDAKQVMEVLMSLQGSQMETDDPTTSYMLQAWARLCKCLGQDFLPYMSVV 597
             GMAVGKD+F++DA+QVMEVLMSLQGSQME DDP TSYMLQAWARLCKCLGQDFLPYM VV
Sbjct:   577 GMAVGKDRFKEDARQVMEVLMSLQGSQMEADDPITSYMLQAWARLCKCLGQDFLPYMKVV 636

Query:   598 MPPLLQSAQLKPDVTITSAXXXXXXXXXXXXXXXTITLGDKRIGIKTSVLEEKATACNML 657
             MPPLLQSAQLKPDVTITSA               TI LGDKRIGIKTSVLEEKATACNML
Sbjct:   637 MPPLLQSAQLKPDVTITSADSEDEAEDSDDESMETIILGDKRIGIKTSVLEEKATACNML 696

Query:   658 CCYADELKEGFFPWIDQVAPTLVPLLKFYFHEEVRKAAVSAMPELLRSAKLAIEKGLAPG 717
             CCYADELKEGFFPWIDQVAPTLVPLLKFYFHEEVR+AAVSAMPEL+RSAKLAIEKG + G
Sbjct:   697 CCYADELKEGFFPWIDQVAPTLVPLLKFYFHEEVRRAAVSAMPELMRSAKLAIEKGESQG 756

Query:   718 RNESYVKQLSDFIIPALVEALHKEPDTEICASMLDSLNECIQISGPLLDEGQVRSIVDEI 777
             R+ SY+KQLSD+IIPA++EALHKEPDTEIC SML+++NEC+QISG LLDEG++RSIVDEI
Sbjct:   757 RDLSYLKQLSDYIIPAMLEALHKEPDTEICVSMLEAINECLQISGNLLDEGKIRSIVDEI 816

Query:   778 KQVITXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVFDQVGEILGTLIKTFKAAF 837
             KQV+T                                   +FDQVGEILGTL+KTFKA+F
Sbjct:   817 KQVMTASSSRKRERGERAHAEDFDAEEGELIKEENEQEEEIFDQVGEILGTLVKTFKASF 876

Query:   838 LPFFDELSSYLTPMWGKDKTAEERRIAICIFDDVAEQCREAALKYYETYLPFLLEACNDE 897
             LPFFDELSSYLTPMWG+DKTAEERRIAICIFDDVAEQCREAA KYY+TYLPF+LEACNDE
Sbjct:   877 LPFFDELSSYLTPMWGRDKTAEERRIAICIFDDVAEQCREAAFKYYDTYLPFVLEACNDE 936

Query:   898 NQDVRQAAVYGLGVCAEFGGSVVKPLVGEALSRLNVVIRHPNALQPENLMAYDNAVSALG 957
             + +VRQAAVYGLGVCAEFGGSV KPL+GEALSRLNVVI+ PNA Q EN MAYDNAVSA+G
Sbjct:   937 SPEVRQAAVYGLGVCAEFGGSVFKPLIGEALSRLNVVIQLPNARQSENAMAYDNAVSAVG 996

Query:   958 KICQFHRDSIDAAQVVPAWLNCLPIKGDLIEAKIVHEQLCSMVERSDSDLLGPNHQYLPK 1017
             KICQFHRDSID++QV+PAWLNCLPI  D++EAK+VH+QLCSMVER D DLLGPN+Q+LPK
Sbjct:   997 KICQFHRDSIDSSQVLPAWLNCLPISNDVLEAKVVHDQLCSMVERQDVDLLGPNNQHLPK 1056

Query:  1018 IVSVFAEILCGKDLATEQTLSRIVNLLKQLQQTLPPATLASTW 1060
             I+ VFAE+L GKD+ T++T  R++N+L+QLQQTLPP+ LASTW
Sbjct:  1057 ILIVFAEVLTGKDVVTQETAGRMINILRQLQQTLPPSALASTW 1099

GO:0009793 "embryo development ending in seed dormancy" evidence=NAS

GO:0016829 "lyase activity" evidence=ISS

GO:0030089 "phycobilisome" evidence=ISS

GO:0005618 "cell wall" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0009165 "nucleotide biosynthetic process" evidence=RCA

GO:0052541 "plant-type cell wall cellulose metabolic process" evidence=RCA

GO:0052546 "cell wall pectin metabolic process" evidence=RCA

MGI\|MGI:1917822 Ipo5 "importin 5" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

UNIPROTKB\|O00410 IPO5 "Importin-5" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

UNIPROTKB\|F1MPE5 IPO5 "Uncharacterized protein" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

RGD\|1308715 Ipo5 "importin 5" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

UNIPROTKB\|F1RP44 IPO5 "Uncharacterized protein" [Sus scrofa (taxid:9823)]	Back alignment and assigned GO terms

UNIPROTKB\|H0Y8C6 IPO5 "Importin-5" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

UNIPROTKB\|E2RF06 IPO5 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

UNIPROTKB\|O60518 RANBP6 "Ran-binding protein 6" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

MGI\|MGI:2683212 Ranbp6 "RAN binding protein 6" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O74476	IMB3_SCHPO	No assigned EC number	0.3366	0.9572	0.9406	yes	no
Q8BKC5	IPO5_MOUSE	No assigned EC number	0.3710	0.9526	0.9343	yes	no
O00410	IPO5_HUMAN	No assigned EC number	0.3728	0.9526	0.9343	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	1.14.99	LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00024803001	SubName- Full=Chromosome chr6 scaffold_3, whole genome shotgun sequence; (1116 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00001176001	SubName- Full=Chromosome chr2 scaffold_113, whole genome shotgun sequence; (605 aa)	•	0.496
	GSVIVG00001918001	SubName- Full=Chromosome chr5 scaffold_124, whole genome shotgun sequence; (1153 aa)	•	0.419

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		1076
COG5215		858	COG5215, KAP95, Karyopherin (importin) beta [Intra	5e-09
pfam13646		88	pfam13646, HEAT_2, HEAT repeats	9e-07
pfam13513		55	pfam13513, HEAT_EZ, HEAT-like repeat	2e-05
smart00913		67	smart00913, IBN_N, Importin-beta N-terminal domain	2e-04
pfam13513		55	pfam13513, HEAT_EZ, HEAT-like repeat	5e-04
pfam13513		55	pfam13513, HEAT_EZ, HEAT-like repeat	0.001
COG5101		1053	COG5101, CRM1, Importin beta-related nuclear trans	0.001
PRK13800		897	PRK13800, PRK13800, putative oxidoreductase/HEAT r	0.002
pfam12755		97	pfam12755, Vac14_Fab1_bd, Vacuolar 14 Fab1-binding	0.003
pfam02985		31	pfam02985, HEAT, HEAT repeat	0.003
pfam06122		360	pfam06122, TraH, Conjugative relaxosome accessory	0.004

>gnl\|CDD\|227540 COG5215, KAP95, Karyopherin (importin) beta [Intracellular trafficking and secretion]	Back alignment and domain information

 Score = 60.3 bits (146), Expect = 5e-09
 Identities = 108/605 (17%), Positives = 219/605 (36%), Gaps = 83/605 (13%)

Query: 71  PEARAMAAVLLRKLLTRDDSFL-------WPRLSLHTQSSLKSMLLQSIQLESAKSISKK 123
            + R +A ++L+  L  +D  L       W  +   ++  +K M L+++     KS   +
Sbjct: 55  DQLRMVAGLILKNSLHANDPELQKGCSQRWLGMRHESKEQVKGMALRAL-----KSPEPR 109

Query: 124 LCDTVSELASNI----LPENGWPELLPFM---------------------FQCVSSDSVK 158
            C   ++L + I    LP + WP L+  M                     + C S     
Sbjct: 110 FCTMAAQLLAAIARMELPNSLWPGLMEEMVRNVGDEQPVSGKCESLGICGYHCESEAPED 169

Query: 159 LQESAFLIFAQLIINFIQCLTSSADR--------DRFQDLLPLM---------MRTLTES 201
           L + + +I   +++  ++  T+SA R        D    +             M+ + E+
Sbjct: 170 LIQMSNVILFAIVMGALKNETTSAVRLAALKALMDSLMFVQGNFCYEEERNYFMQVVCEA 229

Query: 202 LNNGNEATAQEALELLIELAGTEPRFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVI 261
               +E     A   L ++     +F++  + + + ++      +S  +     A+EF  
Sbjct: 230 TQGNDEELQHAAFGCLNKIMMLYYKFMQSYMENALAALT-GRFMKSQNDEVAIQAVEFWS 288

Query: 262 TLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSAETEDEDAGES--SNYSV 319
           T+ E         + LP+   +      + + D+  + L    E + ED      +    
Sbjct: 289 TICEEEIDGEMEDKYLPEVPAQNHGFARAAVADVLPE-LLSLLEKQGEDYYGDDWNPSMA 347

Query: 320 GQECLDRLAIALGGNTIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMV-KNL 378
              CL   A  L G+ I+      +   + +  W    AA++A   +  G  +  + K +
Sbjct: 348 ASSCLQLFA-QLKGDKIMRPVLGFVEQNIRSESWANREAAVMAFGSVMHGPCEDCLTKIV 406

Query: 379 EQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFH--PQVLPALAGAMDDFQN 436
            Q L  + N   D    V+       G ++  +   +    H   +V  +L G MD    
Sbjct: 407 PQALPGIENEMSDSCLWVKSTTAWCFGAIADHVAMIISPCGHLVLEVSASLIGLMD---C 463

Query: 437 PRVQAHAASAVLNFSE------NCTPEILTPYLDGIVSKLL-----VLLQNGKQMVQEGA 485
           P    + +    N  +            L  +   I++ L+      L ++  ++    A
Sbjct: 464 PFRSINCSWRKENLVDHIAKAVREVESFLAKFYLAILNALVKGTELALNESNLRVSLFSA 523

Query: 486 LTALASVA-DSSQEHFQKYYDAVMPFLK---AILVNATDKSNRMLRAKSMECISLVGMAV 541
           L  L  +  D+  +    +YD     L    ++L       +++L  +       V  A+
Sbjct: 524 LGTLILICPDAVSDILAGFYDYTSKKLDECISVLGQILATEDQLLVEELQSNYIGVLEAI 583

Query: 542 GKDKFRDDAKQVMEVLMSLQGSQMETDDPTTSY--MLQAWARLCKCLGQDFLPYMSVVMP 599
            +   R D + V + LM L    +E+  PTT++  +  A + L   L + F  Y S  +P
Sbjct: 584 IR-TRRRDIEDVEDQLMELFIRILESTKPTTAFGDVYTAISALSTSLEERFEQYASKFIP 642

Query: 600 PLLQS 604
            L ++
Sbjct: 643 YLTRA 647

Length = 858

>gnl\|CDD\|222285 pfam13646, HEAT_2, HEAT repeats	Back alignment and domain information

>gnl\|CDD\|205691 pfam13513, HEAT_EZ, HEAT-like repeat	Back alignment and domain information

>gnl\|CDD\|197981 smart00913, IBN_N, Importin-beta N-terminal domain	Back alignment and domain information

>gnl\|CDD\|205691 pfam13513, HEAT_EZ, HEAT-like repeat	Back alignment and domain information

>gnl\|CDD\|205691 pfam13513, HEAT_EZ, HEAT-like repeat	Back alignment and domain information

>gnl\|CDD\|227432 COG5101, CRM1, Importin beta-related nuclear transport receptor [Nuclear structure / Intracellular trafficking and secretion]	Back alignment and domain information

>gnl\|CDD\|237512 PRK13800, PRK13800, putative oxidoreductase/HEAT repeat-containing protein; Provisional	Back alignment and domain information

>gnl\|CDD\|193231 pfam12755, Vac14_Fab1_bd, Vacuolar 14 Fab1-binding region	Back alignment and domain information

>gnl\|CDD\|202500 pfam02985, HEAT, HEAT repeat	Back alignment and domain information

>gnl\|CDD\|218903 pfam06122, TraH, Conjugative relaxosome accessory transposon protein	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		1076
KOG2171		1075	consensus Karyopherin (importin) beta 3 [Nuclear s	100.0
KOG2023		885	consensus Nuclear transport receptor Karyopherin-b	100.0
KOG1241		859	consensus Karyopherin (importin) beta 1 [Nuclear s	100.0
COG5215		858	KAP95 Karyopherin (importin) beta [Intracellular t	100.0
KOG2171		1075	consensus Karyopherin (importin) beta 3 [Nuclear s	100.0
KOG1824		1233	consensus TATA-binding protein-interacting protein	100.0
KOG1991		1010	consensus Nuclear transport receptor RANBP7/RANBP8	100.0
KOG2023		885	consensus Nuclear transport receptor Karyopherin-b	100.0
KOG1241		859	consensus Karyopherin (importin) beta 1 [Nuclear s	100.0
KOG1824		1233	consensus TATA-binding protein-interacting protein	99.98
KOG1992		960	consensus Nuclear export receptor CSE1/CAS (import	99.97
KOG1993		978	consensus Nuclear transport receptor KAP120 (impor	99.97
KOG2274		1005	consensus Predicted importin 9 [Intracellular traf	99.97
KOG0213		1172	consensus Splicing factor 3b, subunit 1 [RNA proce	99.96
COG5215		858	KAP95 Karyopherin (importin) beta [Intracellular t	99.95
COG5181		975	HSH155 U2 snRNP spliceosome subunit [RNA processin	99.92
COG5656		970	SXM1 Importin, protein involved in nuclear import	99.91
KOG2022		982	consensus Nuclear transport receptor LGL2 (importi	99.87
KOG0213		1172	consensus Splicing factor 3b, subunit 1 [RNA proce	99.85
KOG0915		1702	consensus Uncharacterized conserved protein [Funct	99.83
PLN03200		2102	cellulose synthase-interactive protein; Provisiona	99.82
KOG0915		1702	consensus Uncharacterized conserved protein [Funct	99.8
KOG2021		980	consensus Nuclear mRNA export factor receptor LOS1	99.8
PLN03200		2102	cellulose synthase-interactive protein; Provisiona	99.79
COG5657		947	CSE1 CAS/CSE protein involved in chromosome segreg	99.77
COG5101		1053	CRM1 Importin beta-related nuclear transport recep	99.76
COG5181		975	HSH155 U2 snRNP spliceosome subunit [RNA processin	99.76
KOG1242		569	consensus Protein containing adaptin N-terminal re	99.73
KOG1242		569	consensus Protein containing adaptin N-terminal re	99.73
KOG1991		1010	consensus Nuclear transport receptor RANBP7/RANBP8	99.72
KOG0212		675	consensus Uncharacterized conserved protein [Funct	99.63
KOG0212		675	consensus Uncharacterized conserved protein [Funct	99.54
KOG1248		1176	consensus Uncharacterized conserved protein [Funct	99.54
KOG1248		1176	consensus Uncharacterized conserved protein [Funct	99.49
KOG2081		559	consensus Nuclear transport regulator [Intracellul	99.48
KOG2274		1005	consensus Predicted importin 9 [Intracellular traf	99.48
PF01602		526	Adaptin_N: Adaptin N terminal region; InterPro: IP	99.47
PTZ00429		746	beta-adaptin; Provisional	99.47
PF01602		526	Adaptin_N: Adaptin N terminal region; InterPro: IP	99.41
PTZ00429		746	beta-adaptin; Provisional	99.4
KOG0166		514	consensus Karyopherin (importin) alpha [Intracellu	99.4
KOG1992		960	consensus Nuclear export receptor CSE1/CAS (import	99.4
KOG0166		514	consensus Karyopherin (importin) alpha [Intracellu	99.39
KOG0211		759	consensus Protein phosphatase 2A regulatory subuni	99.25
KOG1943		1133	consensus Beta-tubulin folding cofactor D [Posttra	99.21
KOG1943		1133	consensus Beta-tubulin folding cofactor D [Posttra	99.16
KOG0211		759	consensus Protein phosphatase 2A regulatory subuni	99.14
PF10508		503	Proteasom_PSMB: Proteasome non-ATPase 26S subunit;	99.14
PF08506		370	Cse1: Cse1; InterPro: IPR013713 The exchange of ma	99.11
KOG0392		1549	consensus SNF2 family DNA-dependent ATPase domain-	99.08
COG5064		526	SRP1 Karyopherin (importin) alpha [Intracellular t	99.07
PRK09687		280	putative lyase; Provisional	99.06
PF12755		97	Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	99.05
PF10508		503	Proteasom_PSMB: Proteasome non-ATPase 26S subunit;	99.04
PRK13800		897	putative oxidoreductase/HEAT repeat-containing pro	99.0
PRK09687		280	putative lyase; Provisional	98.99
PRK13800		897	putative oxidoreductase/HEAT repeat-containing pro	98.94
COG5064		526	SRP1 Karyopherin (importin) alpha [Intracellular t	98.91
PF12460		415	MMS19_C: RNAPII transcription regulator C-terminal	98.89
PF12348		228	CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi	98.87
KOG1060		968	consensus Vesicle coat complex AP-3, beta subunit	98.87
KOG0891		2341	consensus DNA-dependent protein kinase [Replicatio	98.81
KOG1062		866	consensus Vesicle coat complex AP-1, gamma subunit	98.79
KOG1020		1692	consensus Sister chromatid cohesion protein SCC2/N	98.78
KOG1060		968	consensus Vesicle coat complex AP-3, beta subunit	98.71
KOG1062		866	consensus Vesicle coat complex AP-1, gamma subunit	98.71
PF12460		415	MMS19_C: RNAPII transcription regulator C-terminal	98.69
PF03810		77	IBN_N: Importin-beta N-terminal domain; InterPro:	98.68
PF12348		228	CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi	98.66
PF03378		435	CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: I	98.65
KOG2020		1041	consensus Nuclear transport receptor CRM1/MSN5 (im	98.64
KOG2021		980	consensus Nuclear mRNA export factor receptor LOS1	98.6
KOG1059		877	consensus Vesicle coat complex AP-3, delta subunit	98.58
KOG2032		533	consensus Uncharacterized conserved protein [Funct	98.56
PF12755		97	Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	98.51
KOG1240		1431	consensus Protein kinase containing WD40 repeats [	98.51
COG5240		898	SEC21 Vesicle coat complex COPI, gamma subunit [In	98.5
KOG1020		1692	consensus Sister chromatid cohesion protein SCC2/N	98.5
cd00020		120	ARM Armadillo/beta-catenin-like repeats. An approx	98.43
KOG1240		1431	consensus Protein kinase containing WD40 repeats [	98.42
PF13513		55	HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O	98.39
KOG2022		982	consensus Nuclear transport receptor LGL2 (importi	98.33
KOG1059		877	consensus Vesicle coat complex AP-3, delta subunit	98.32
KOG4224		550	consensus Armadillo repeat protein VAC8 required f	98.28
KOG4224		550	consensus Armadillo repeat protein VAC8 required f	98.27
KOG1061		734	consensus Vesicle coat complex AP-1/AP-2/AP-4, bet	98.27
PF03378		435	CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: I	98.25
KOG1061		734	consensus Vesicle coat complex AP-1/AP-2/AP-4, bet	98.21
KOG1820		815	consensus Microtubule-associated protein [Cytoskel	98.18
COG5240		898	SEC21 Vesicle coat complex COPI, gamma subunit [In	98.17
KOG4535		728	consensus HEAT and armadillo repeat-containing pro	98.17
KOG0168		1051	consensus Putative ubiquitin fusion degradation pr	98.15
KOG2956		516	consensus CLIP-associating protein [General functi	98.09
COG5096		757	Vesicle coat complex, various subunits [Intracellu	98.07
cd00020		120	ARM Armadillo/beta-catenin-like repeats. An approx	98.03
KOG2956		516	consensus CLIP-associating protein [General functi	98.0
PF08389		148	Xpo1: Exportin 1-like protein; InterPro: IPR013598	97.96
KOG4413		524	consensus 26S proteasome regulatory complex, subun	97.94
KOG1058		948	consensus Vesicle coat complex COPI, beta subunit	97.93
PF13513		55	HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O	97.93
KOG2259		823	consensus Uncharacterized conserved protein [Funct	97.92
KOG2259		823	consensus Uncharacterized conserved protein [Funct	97.92
KOG1077		938	consensus Vesicle coat complex AP-2, alpha subunit	97.91
COG5656		970	SXM1 Importin, protein involved in nuclear import	97.89
KOG4535		728	consensus HEAT and armadillo repeat-containing pro	97.82
PF13646		88	HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I	97.78
PF10274		183	ParcG: Parkin co-regulated protein; InterPro: IPR0	97.77
KOG1967		1030	consensus DNA repair/transcription protein Mms19 [	97.75
KOG2933		334	consensus Uncharacterized conserved protein [Funct	97.71
KOG4653		982	consensus Uncharacterized conserved protein [Funct	97.71
PF12717		178	Cnd1: non-SMC mitotic condensation complex subunit	97.7
PF08167		165	RIX1: rRNA processing/ribosome biogenesis	97.69
KOG0414		1251	consensus Chromosome condensation complex Condensi	97.66
KOG1078		865	consensus Vesicle coat complex COPI, gamma subunit	97.62
KOG0946		970	consensus ER-Golgi vesicle-tethering protein p115	97.6
PF04826		254	Arm_2: Armadillo-like; InterPro: IPR006911 This en	97.53
KOG0891		2341	consensus DNA-dependent protein kinase [Replicatio	97.53
PF12717		178	Cnd1: non-SMC mitotic condensation complex subunit	97.49
PF13646		88	HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I	97.47
KOG1410		1082	consensus Nuclear transport receptor RanBP16 (impo	97.46
PF05004		309	IFRD: Interferon-related developmental regulator (	97.4
KOG1993		978	consensus Nuclear transport receptor KAP120 (impor	97.4
PF13251		182	DUF4042: Domain of unknown function (DUF4042)	97.39
PF02985		31	HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re	97.36
KOG0168		1051	consensus Putative ubiquitin fusion degradation pr	97.35
KOG0414		1251	consensus Chromosome condensation complex Condensi	97.34
KOG2032		533	consensus Uncharacterized conserved protein [Funct	97.32
PF05004		309	IFRD: Interferon-related developmental regulator (	97.29
PF08506		370	Cse1: Cse1; InterPro: IPR013713 The exchange of ma	97.29
PF11865		160	DUF3385: Domain of unknown function (DUF3385); Int	97.28
PF02985		31	HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re	97.24
KOG1822		2067	consensus Uncharacterized conserved protein [Funct	97.23
KOG4653		982	consensus Uncharacterized conserved protein [Funct	97.22
KOG1967		1030	consensus DNA repair/transcription protein Mms19 [	97.2
KOG1820		815	consensus Microtubule-associated protein [Cytoskel	97.19
PF05804		708	KAP: Kinesin-associated protein (KAP)	97.17
PF11864		464	DUF3384: Domain of unknown function (DUF3384); Int	97.17
KOG1078		865	consensus Vesicle coat complex COPI, gamma subunit	97.16
PF14500		262	MMS19_N: Dos2-interacting transcription regulator	97.13
PF10274		183	ParcG: Parkin co-regulated protein; InterPro: IPR0	97.06
PF10521		282	DUF2454: Protein of unknown function (DUF2454); In	97.04
PF05918		556	API5: Apoptosis inhibitory protein 5 (API5); Inter	96.98
PF05804		708	KAP: Kinesin-associated protein (KAP)	96.98
KOG1077		938	consensus Vesicle coat complex AP-2, alpha subunit	96.98
PLN03076		1780	ARF guanine nucleotide exchange factor (ARF-GEF);	96.96
COG5116		926	RPN2 26S proteasome regulatory complex component [	96.93
KOG2160		342	consensus Armadillo/beta-catenin-like repeat-conta	96.92
PF14500		262	MMS19_N: Dos2-interacting transcription regulator	96.92
KOG2062		929	consensus 26S proteasome regulatory complex, subun	96.86
PF04826		254	Arm_2: Armadillo-like; InterPro: IPR006911 This en	96.86
PF08167		165	RIX1: rRNA processing/ribosome biogenesis	96.83
KOG1058		948	consensus Vesicle coat complex COPI, beta subunit	96.81
PF08623		169	TIP120: TATA-binding protein interacting (TIP20);	96.79
KOG4524		1014	consensus Uncharacterized conserved protein [Funct	96.77
KOG1517		1387	consensus Guanine nucleotide binding protein MIP1	96.75
PF08064		107	UME: UME (NUC010) domain; InterPro: IPR012993 This	96.75
KOG4413		524	consensus 26S proteasome regulatory complex, subun	96.74
PF12719		298	Cnd3: Nuclear condensing complex subunits, C-term	96.72
COG1413		335	FOG: HEAT repeat [Energy production and conversion	96.67
COG5096		757	Vesicle coat complex, various subunits [Intracellu	96.67
PF05918		556	API5: Apoptosis inhibitory protein 5 (API5); Inter	96.67
COG1413		335	FOG: HEAT repeat [Energy production and conversion	96.65
PF12719		298	Cnd3: Nuclear condensing complex subunits, C-term	96.61
KOG0413		1529	consensus Uncharacterized conserved protein relate	96.59
KOG2759		442	consensus Vacuolar H+-ATPase V1 sector, subunit H	96.59
smart00802		107	UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1.	96.57
PLN03076		1780	ARF guanine nucleotide exchange factor (ARF-GEF);	96.56
PF11864		464	DUF3384: Domain of unknown function (DUF3384); Int	96.56
KOG1525		1266	consensus Sister chromatid cohesion complex Cohesi	96.53
KOG1243		690	consensus Protein kinase [General function predict	96.51
KOG4524		1014	consensus Uncharacterized conserved protein [Funct	96.28
KOG0413		1529	consensus Uncharacterized conserved protein relate	96.27
KOG1837		1621	consensus Uncharacterized conserved protein [Funct	96.26
PF08064		107	UME: UME (NUC010) domain; InterPro: IPR012993 This	96.24
cd00256		429	VATPase_H VATPase_H, regulatory vacuolar ATP synth	96.17
TIGR02270		410	conserved hypothetical protein. Members are found	96.16
smart00802		107	UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1.	96.14
PF12054		441	DUF3535: Domain of unknown function (DUF3535); Int	96.05
cd00256		429	VATPase_H VATPase_H, regulatory vacuolar ATP synth	96.03
KOG0889		3550	consensus Histone acetyltransferase SAGA, TRRAP/TR	96.03
PF13251		182	DUF4042: Domain of unknown function (DUF4042)	95.99
KOG2149		393	consensus Uncharacterized conserved protein [Funct	95.92
PF04510		174	DUF577: Family of unknown function (DUF577); Inter	95.87
PF08767		319	CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1	95.86
TIGR02270		410	conserved hypothetical protein. Members are found	95.79
KOG1293		678	consensus Proteins containing armadillo/beta-caten	95.79
PF04118		307	Dopey_N: Dopey, N-terminal; InterPro: IPR007249 Do	95.68
KOG1293		678	consensus Proteins containing armadillo/beta-caten	95.63
PF13001		501	Ecm29: Proteasome stabiliser; InterPro: IPR024372	95.58
KOG1851		1710	consensus Uncharacterized conserved protein [Funct	95.56
KOG2933		334	consensus Uncharacterized conserved protein [Funct	95.54
KOG4500		604	consensus Rho/Rac GTPase guanine nucleotide exchan	95.46
PF12231		372	Rif1_N: Rap1-interacting factor 1 N terminal; Inte	95.42
PF01603		409	B56: Protein phosphatase 2A regulatory B subunit (	95.34
KOG0392		1549	consensus SNF2 family DNA-dependent ATPase domain-	95.28
KOG2025		892	consensus Chromosome condensation complex Condensi	95.19
KOG2025		892	consensus Chromosome condensation complex Condensi	95.15
PF10521		282	DUF2454: Protein of unknown function (DUF2454); In	95.03
COG5095		450	TAF6 Transcription initiation factor TFIID, subuni	94.94
PF08767		319	CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1	94.89
COG5095		450	TAF6 Transcription initiation factor TFIID, subuni	94.74
KOG2137		700	consensus Protein kinase [Signal transduction mech	94.68
PF11865		160	DUF3385: Domain of unknown function (DUF3385); Int	94.68
COG5116		926	RPN2 26S proteasome regulatory complex component [	94.59
KOG2160		342	consensus Armadillo/beta-catenin-like repeat-conta	94.44
PF01603		409	B56: Protein phosphatase 2A regulatory B subunit (	94.33
KOG0567		289	consensus HEAT repeat-containing protein [General	94.3
KOG2137		700	consensus Protein kinase [Signal transduction mech	94.17
KOG1243		690	consensus Protein kinase [General function predict	93.89
PF10363		92	DUF2435: Protein of unknown function (DUF2435)	93.88
PF12231		372	Rif1_N: Rap1-interacting factor 1 N terminal; Inte	93.86
PF13001		501	Ecm29: Proteasome stabiliser; InterPro: IPR024372	93.69
KOG2549		576	consensus Transcription initiation factor TFIID, s	93.68
KOG2149		393	consensus Uncharacterized conserved protein [Funct	93.64
PF10363		92	DUF2435: Protein of unknown function (DUF2435)	93.62
KOG1949		1005	consensus Uncharacterized conserved protein [Funct	93.51
cd08050		343	TAF6 TATA Binding Protein (TBP) Associated Factor	93.28
cd08050		343	TAF6 TATA Binding Protein (TBP) Associated Factor	93.26
PF05536		543	Neurochondrin: Neurochondrin	93.18
KOG2122		2195	consensus Beta-catenin-binding protein APC, contai	93.15
PF08623		169	TIP120: TATA-binding protein interacting (TIP20);	93.1
KOG0889		3550	consensus Histone acetyltransferase SAGA, TRRAP/TR	93.09
KOG2062		929	consensus 26S proteasome regulatory complex, subun	92.82
KOG1949		1005	consensus Uncharacterized conserved protein [Funct	92.69
COG5218		885	YCG1 Chromosome condensation complex Condensin, su	92.62
KOG1048		717	consensus Neural adherens junction protein Plakoph	92.45
PF00790		140	VHS: VHS domain; InterPro: IPR002014 The VHS domai	92.42
KOG1517		1387	consensus Guanine nucleotide binding protein MIP1	92.32
PF05536		543	Neurochondrin: Neurochondrin	92.17
KOG1048		717	consensus Neural adherens junction protein Plakoph	92.01
smart00638		574	LPD_N Lipoprotein N-terminal Domain.	91.96
KOG2549		576	consensus Transcription initiation factor TFIID, s	91.93
PF12054		441	DUF3535: Domain of unknown function (DUF3535); Int	90.96
KOG3961		262	consensus Uncharacterized conserved protein [Funct	90.95
KOG0803		1312	consensus Predicted E3 ubiquitin ligase [Posttrans	90.76
KOG2122		2195	consensus Beta-catenin-binding protein APC, contai	90.49
PF00514		41	Arm: Armadillo/beta-catenin-like repeat; InterPro:	90.33
PF03224		312	V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004	90.04
PF08389		148	Xpo1: Exportin 1-like protein; InterPro: IPR013598	89.73
PF04118		307	Dopey_N: Dopey, N-terminal; InterPro: IPR007249 Do	89.7
PF01347		618	Vitellogenin_N: Lipoprotein amino terminal region;	89.57
cd03561		133	VHS VHS domain family; The VHS domain is present i	89.27
PF08161		198	NUC173: NUC173 domain; InterPro: IPR012978 This is	89.26
KOG0567		289	consensus HEAT repeat-containing protein [General	89.24
smart00638		574	LPD_N Lipoprotein N-terminal Domain.	89.24
PF12333		102	Ipi1_N: Rix1 complex component involved in 60S rib	88.54
PF00514		41	Arm: Armadillo/beta-catenin-like repeat; InterPro:	88.52
KOG1877		819	consensus Putative transmembrane protein cmp44E [G	88.38
PF14664		371	RICTOR_N: Rapamycin-insensitive companion of mTOR,	87.85
PF11698		119	V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011	87.82
cd03568		144	VHS_STAM VHS domain family, STAM subfamily; member	87.48
cd03568		144	VHS_STAM VHS domain family, STAM subfamily; member	87.28
KOG1848		1610	consensus Uncharacterized conserved protein [Funct	87.27
cd03569		142	VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p s	87.24
KOG3036		293	consensus Protein involved in cell differentiation	87.15
PF03224		312	V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004	86.99
smart00288		133	VHS Domain present in VPS-27, Hrs and STAM. Unpubl	86.86
PF01347		618	Vitellogenin_N: Lipoprotein amino terminal region;	86.47
KOG3036		293	consensus Protein involved in cell differentiation	86.46
PF12783		168	Sec7_N: Guanine nucleotide exchange factor in Golg	86.41
KOG1222		791	consensus Kinesin associated protein KAP [Intracel	86.21
KOG2081		559	consensus Nuclear transport regulator [Intracellul	85.19
cd03569		142	VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p s	84.78
PF12530		234	DUF3730: Protein of unknown function (DUF3730) ; I	84.71
PF11698		119	V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011	84.66
PF00790		140	VHS: VHS domain; InterPro: IPR002014 The VHS domai	84.31
cd03567		139	VHS_GGA VHS domain family, GGA subfamily; GGA (Gol	84.14
PF12765		42	Cohesin_HEAT: HEAT repeat associated with sister c	83.98
PF11919		90	DUF3437: Domain of unknown function (DUF3437); Int	83.97
smart00288		133	VHS Domain present in VPS-27, Hrs and STAM. Unpubl	83.93
cd03561		133	VHS VHS domain family; The VHS domain is present i	83.85
cd03565		141	VHS_Tom1 VHS domain family, Tom1 subfamily; The VH	83.62
PF04078		262	Rcd1: Cell differentiation family, Rcd1-like ; Int	83.52
PF08569		335	Mo25: Mo25-like; InterPro: IPR013878 Mo25-like pro	83.38
COG5218		885	YCG1 Chromosome condensation complex Condensin, su	83.34
PF08146		153	BP28CT: BP28CT (NUC211) domain; InterPro: IPR01295	83.31
PF09324		86	DUF1981: Domain of unknown function (DUF1981); Int	82.91
PF12333		102	Ipi1_N: Rix1 complex component involved in 60S rib	82.81
cd03567		139	VHS_GGA VHS domain family, GGA subfamily; GGA (Gol	82.47
KOG4500		604	consensus Rho/Rac GTPase guanine nucleotide exchan	81.14
PF12074		339	DUF3554: Domain of unknown function (DUF3554); Int	81.08
COG5231		432	VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Ene	80.57

>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

Probab=100.00  E-value=6.9e-136  Score=1146.41  Aligned_cols=1033  Identities=46%  Similarity=0.770  Sum_probs=948.2

Q ss_pred             CChHHHHHHHHHhcCCChHHHHHHHHHHHHhhhcCchHHHHHHHHHHccCCCHHHHHHHHHHHHHhcccCCCCcccCCCH
Q 001442           19 PDSAPFETLISHLMSTSNEQRSEAELLFNLCKQQDPDSLTLKLAHLLQRSPHPEARAMAAVLLRKLLTRDDSFLWPRLSL   98 (1076)
Q Consensus        19 ~~~~~l~~lL~~~~s~d~~~r~~Ae~~L~~~~~~~p~~~~~~L~~il~~~~~~~~R~~a~v~Lk~~i~~~~~~~w~~l~~   98 (1076)
                      |+.+.|.++++.+.||||++|++||+.|+....+.|  .+..|.+++.++.++++||+|||++|+.+.+.    |+.++.
T Consensus         1 ~~~~~l~qLl~~l~spDn~vr~~Ae~~l~~~~~~~~--~l~~L~~i~~~~~~p~~Rq~aaVl~Rkl~~~~----w~~l~~   74 (1075)
T KOG2171|consen    1 MDSAPLEQLLQQLLSPDNEVRRQAEEALETLAKTEP--LLPALAHILATSADPQVRQLAAVLLRKLLTKH----WSRLSA   74 (1075)
T ss_pred             CchhHHHHHHHHhcCCCchHHHHHHHHHHHhhcccc--hHHHHHHHHhcCCChHHHHHHHHHHHHHHHHH----hhcCCH
Confidence            466799999999999999999999999987555334  67999999999999999999999999999997    999999


Q ss_pred             hHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhcccCCCCcchhHHHHHHhhcCCCHHHHHHHHHHHHHH--------
Q 001442           99 HTQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQL--------  170 (1076)
Q Consensus        99 ~~~~~lk~~Ll~~l~~~~~~~vr~~~~~~i~~ia~~~~~~~~w~~ll~~l~~~~~~~~~~~r~~al~~L~~l--------  170 (1076)
                      +.|+.||+.||..+.+|+.+.||+++|++|+.||+.+++. .||+++++|+++.+|+++..|+.|+.+|..+        
T Consensus        75 e~~~siks~lL~~~~~E~~~~vr~k~~dviAeia~~~l~e-~WPell~~L~q~~~S~~~~~rE~al~il~s~~~~~~~~~  153 (1075)
T KOG2171|consen   75 EVQQSIKSSLLEIIQSETEPSVRHKLADVIAEIARNDLPE-KWPELLQFLFQSTKSPNPSLRESALLILSSLPETFGNTL  153 (1075)
T ss_pred             HHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhcccc-chHHHHHHHHHHhcCCCcchhHHHHHHHHhhhhhhcccc
Confidence            9999999999999999999999999999999999999995 9999999999999999999999999999888        


Q ss_pred             -----------------------------HHHHHHhhC-CcchHhHHhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH
Q 001442          171 -----------------------------IINFIQCLT-SSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIEL  220 (1076)
Q Consensus       171 -----------------------------~~~~~~~l~-~~~~~~~~~~l~p~~l~~l~~~~~~~~~~~~~~~~~~l~~l  220 (1076)
                                                   +.++...++ ++.....|..++|.++.++...++.+|.+....++++|.++
T Consensus       154 ~~~~~~l~~lf~q~~~d~s~~vr~~a~rA~~a~~~~~~~~~~~~~~~~~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El  233 (1075)
T KOG2171|consen  154 QPHLDDLLRLFSQTMTDPSSPVRVAAVRALGAFAEYLENNKSEVDKFRDLLPSLLNVLQEVIQDGDDDAAKSALEALIEL  233 (1075)
T ss_pred             chhHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHhccchHHHHHHHHHhHHHHHHhHhhhhccchHHHHHHHHHHHHH
Confidence                                         122222331 34456788899999999999999999999999999999999


Q ss_pred             HccCcHHHHHhHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHhhcccchhhccchhhHHHHHHHHHHhhcCCCCCcc
Q 001442          221 AGTEPRFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPL  300 (1076)
Q Consensus       221 ~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~dd~~  300 (1076)
                      ++..|+++++|+..++++++.+..|++.++.+|..|++++.++++   ++|.+.++.+++...+++.++.+|.+.++|++
T Consensus       234 ~e~~pk~l~~~l~~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e---~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~e  310 (1075)
T KOG2171|consen  234 LESEPKLLRPHLSQIIQFSLEIAKNKELENSIRHLALEFLVSLSE---YAPAMCKKLALLGHTLVPVLLAMMTEEEDDDE  310 (1075)
T ss_pred             HhhchHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHH---hhHHHhhhchhhhccHHHHHHHhcCCcccchh
Confidence            999999999999999999999999999999999999999999999   49999999999999999999999999998999


Q ss_pred             ccCCCCCCcccCCCCchhhHHHHHHHHHHHcCCCcchHHHHHHHHHhhcCCChhHHHHHHHHHHHHHhhcHHHHHHhHHH
Q 001442          301 WHSAETEDEDAGESSNYSVGQECLDRLAIALGGNTIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQ  380 (1076)
Q Consensus       301 ~~~~~~e~~d~~e~~~~~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~  380 (1076)
                      |...|+.|+|+ +.+++..|.+++|+++.++|++.++|.+++++..+++|++|+.|+||+++|+.+++||.+.+.+++++
T Consensus       311 w~~~d~~ded~-~~~~~~~A~~~lDrlA~~L~g~~v~p~~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l~~  389 (1075)
T KOG2171|consen  311 WSNEDDLDEDD-EETPYRAAEQALDRLALHLGGKQVLPPLFEALEAMLQSTEWKERHAALLALSVIAEGCSDVMIGNLPK  389 (1075)
T ss_pred             hcccccccccc-ccCcHHHHHHHHHHHHhcCChhhehHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence            99887776554 56688899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhCCCCChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhccCCCChhHHHHHHHHHHHhhhcCCccccc
Q 001442          381 VLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILT  460 (1076)
Q Consensus       381 i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~v~~~a~~aL~~l~~~~~~~~l~  460 (1076)
                      |++.++++|+|+||+||++||.++|+++..++|.+++.+++.+.|.|+..+.+..+++|+.+|+.++.+|.+.+..+.+.
T Consensus       390 Il~~Vl~~l~DphprVr~AA~naigQ~stdl~p~iqk~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~  469 (1075)
T KOG2171|consen  390 ILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQPEIQKKHHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDKSILE  469 (1075)
T ss_pred             HHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhcHHHHHHHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHHHH
Confidence            99999999999999999999999999999999999888888899999999999778999999999999999999999999


Q ss_pred             CchHHHHH-HHHHHhhcCchhHHHHHHHHHHHHHHHhHhhHHhhHhhhHHHHHHHHhccCCchhhhhHHHHHHHHHHHHH
Q 001442          461 PYLDGIVS-KLLVLLQNGKQMVQEGALTALASVADSSQEHFQKYYDAVMPFLKAILVNATDKSNRMLRAKSMECISLVGM  539 (1076)
Q Consensus       461 ~~l~~ll~-~l~~~l~~~~~~v~~~al~ai~~l~~~~~~~~~~~~~~i~~~L~~~l~~~~~~~~~~lr~~a~~~l~~i~~  539 (1076)
                      ||++.+|. .+..+++++++.+++.++.+||++|.+++..|.||++++||.|...+.+..+++.+.+|++.++|++.++.
T Consensus       470 pYLd~lm~~~l~~L~~~~~~~v~e~vvtaIasvA~AA~~~F~pY~d~~Mp~L~~~L~n~~~~d~r~LrgktmEcisli~~  549 (1075)
T KOG2171|consen  470 PYLDGLMEKKLLLLLQSSKPYVQEQAVTAIASVADAAQEKFIPYFDRLMPLLKNFLQNADDKDLRELRGKTMECLSLIAR  549 (1075)
T ss_pred             HHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHHHHHHhCCCchhhHHHHhhHHHHHHHHHH
Confidence            99999999 55666778889999999999999999999999999999999999999998888999999999999999999


Q ss_pred             HhchhhhhhhHHHHHHHHHHHhcCCCCCCChhhHHHHHHHHHHHHHhccCcccchhhhhHHHHHhccCCCCccccCCCCC
Q 001442          540 AVGKDKFRDDAKQVMEVLMSLQGSQMETDDPTTSYMLQAWARLCKCLGQDFLPYMSVVMPPLLQSAQLKPDVTITSADSD  619 (1076)
Q Consensus       540 ~~g~~~~~~~~~~ii~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~i~~~ll~~~~~~~~~~~~~~d~d  619 (1076)
                      ++|++.|.|+..++|+.+...+.+..+.+++.++|.+.+|+++|+++|++|.||++.+||.++++...+|++...|+++ 
T Consensus       550 AVGke~F~~~a~eliqll~~~~~~~~~~dd~~~sy~~~~warmc~ilg~~F~p~L~~Vmppl~~ta~~~p~~~~~d~~d-  628 (1075)
T KOG2171|consen  550 AVGKEKFLPLAEELIQLLLELQGSDQDDDDPLRSYMIAFWARMCRILGDDFAPFLPVVMPPLLKTARLDPDVALSDEED-  628 (1075)
T ss_pred             HhhhhhhhHhHHHHHHHHHhhcccchhhccccHHHHHHHHHHHHHHhchhhHhHHHHHhHHHHHhhccCCcccCcCchh-
Confidence            9999999999999999999987777777889999999999999999999999999999999999999999887764332 


Q ss_pred             ccccCCCCcccchhhcCCc-eeeecchhHHHHHHHHHHHHHHHHHhhhcccccHHHHHHHhhhcccccCCHHHHHHHHHH
Q 001442          620 NEIEDSDDDSMETITLGDK-RIGIKTSVLEEKATACNMLCCYADELKEGFFPWIDQVAPTLVPLLKFYFHEEVRKAAVSA  698 (1076)
Q Consensus       620 ~~~~~~d~~~~~~~~~~~~-~~~v~~~~~~~k~~A~~~l~~i~~~~~~~~~p~l~~~~~~l~~~l~~~~~~~vr~~a~~~  698 (1076)
                       +.+..++++|++..++++ .++|+|+.+++|++||.+|++++..++.+|.||++++++..++.+.++||++||++|+.+
T Consensus       629 -~e~~~~~~~~e~~~~~~~e~~~I~Tsvl~eK~~A~~~Lv~~a~~lk~~F~pYve~v~~l~v~~l~f~fhdgVR~aa~~~  707 (1075)
T KOG2171|consen  629 -EEEEQDLDGWEVVELGDKENIGIRTSVLDEKETACEALGEYAKELKEAFAPYVEQVVELMVPLLKFYFHDGVRKAAAES  707 (1075)
T ss_pred             -hhhccccccchhhccCCceeeeeeehhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence             222235677888888887 999999999999999999999999999999999999999888889999999999999999


Q ss_pred             HHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHHHhCCC-CCHHHHHHHHHHH
Q 001442          699 MPELLRSAKLAIEKGLAPGRNESYVKQLSDFIIPALVEALHKEPDTEICASMLDSLNECIQISGPL-LDEGQVRSIVDEI  777 (1076)
Q Consensus       699 l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~l~~l~~~i~~~g~~-~~~~~~~~~~~~l  777 (1076)
                      ++.++.+...+..+      .+.+++.++..+.+.+++.+.+|+++++...+++++..|++.+|+. +.++....+...+
T Consensus       708 ~p~ll~~~~~A~~~------~p~~l~~l~~~~~~~l~~~l~~E~e~~vl~~vl~~f~~~i~~~G~~~L~~~~~~~~~~~~  781 (1075)
T KOG2171|consen  708 MPQLLTCALKACQG------GPEYLKQLWEAIRPALIKALEEEPETEVLSEILESFAECIEVMGDNCLNEDGLEALLGGL  781 (1075)
T ss_pred             HHHHHHHHHHHhcc------ChHHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHhcCcccCCcHHHHHHHHHH
Confidence            99999988776533      3458999999999999999999999999999999999999999974 7888888888887


Q ss_pred             HHHHHHHHHhHHHHHHhhcCCCCChHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhhchhhhHHHHHHhHhhhhcCCCC
Q 001442          778 KQVITASSSRKRERAERAKAEDFDAEESELIKEENEQEEEVFDQVGEILGTLIKTFKAAFLPFFDELSSYLTPMWGKDKT  857 (1076)
Q Consensus       778 ~~~l~~~~~~~~~~~~~~~~ed~d~~~~~~~~e~~e~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~  857 (1076)
                      ...+.....+...|.....+||+|.++.+.+.   |.+..+++.+.+.+..+++.++..|.|+|+.+.|.+.+++.+++.
T Consensus       782 ~~~~l~~~~~~~~r~~~~~eed~d~~eee~~~---e~d~~ll~~i~~i~~~l~k~~k~~f~p~f~~~~p~iv~~l~~~~~  858 (1075)
T KOG2171|consen  782 LAQLLQHFKRMQDRQEEDDEEDDDIEEEEDLD---EQDAYLLDAISDILAALAKALKGSFLPFFENFLPLIVKLLKSKKT  858 (1075)
T ss_pred             HHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHh---hhhHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHhcCCc
Confidence            77777777666666554444555554444333   677889999999999999999999999999999999999977777


Q ss_pred             HHHHHHHHHHHHHHHHHhhhhhHhhHHhHHHHHHhhccCCChhHHhhhhHHHHHHHhhcCCCchHHHHHHHHHHHHhhcC
Q 001442          858 AEERRIAICIFDDVAEQCREAALKYYETYLPFLLEACNDENQDVRQAAVYGLGVCAEFGGSVVKPLVGEALSRLNVVIRH  937 (1076)
Q Consensus       858 ~~~r~~al~~l~~l~~~~~~~~~~~~~~ll~~l~~~l~~~~~~vr~~a~~~lg~l~~~~~~~~~~~~~~il~~L~~~l~~  937 (1076)
                      .. |++++|+++++++.+|+...+|+..++|.++.++.|.+++||++|+||+|.+|+++++.+.|.+...++.|...+..
T Consensus       859 ~~-r~~av~~~~d~ie~~~~a~~~~~~~~~p~~~~~~~d~~pEVRqaAsYGiGvlaq~~g~~y~~v~~~~l~~L~~~iq~  937 (1075)
T KOG2171|consen  859 VA-RQWAVCIFDDLIEGCGEASAKYKERFLPLVLEALQDSDPEVRQAAAYGMGVLAQFGGEDYAPVCSEALPLLVQVLQP  937 (1075)
T ss_pred             HH-HHHHHHHHHHHHHhcccccchHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHcC
Confidence            77 99999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCChhhhhHHHHHHHHHHHHHhhcCCCCCHhhHHHHHHhhCCCCCcHHHHHHHHHHHHHHHhhcCCcccCcCcCchhh
Q 001442          938 PNALQPENLMAYDNAVSALGKICQFHRDSIDAAQVVPAWLNCLPIKGDLIEAKIVHEQLCSMVERSDSDLLGPNHQYLPK 1017 (1076)
Q Consensus       938 ~~~~~~~~~~~~~na~~al~~i~~~~~~~~~~~~~l~~~l~~lp~~~d~~e~~~~~~~l~~li~~~~~~~~~~~~~~l~~ 1017 (1076)
                      ++.+.+.+..+++||++|++||+.+++..+++++++|.||+.||..+|.+|+..+|.+|+.|+++++|.+++++++++|+
T Consensus       938 ~~ar~Ee~~~ateNa~gaiaki~~~~~~~i~vdqvl~~~l~~LPl~~D~eEa~~iy~~l~~L~e~n~p~v~~~~n~~ip~ 1017 (1075)
T KOG2171|consen  938 PLARTEENRRATENAIGAIAKILLFNPNRIPVDQVLPAWLSWLPLKEDKEEAVPIYTFLSDLYESNHPIVLGPNNQNIPK 1017 (1075)
T ss_pred             hhhhhHHHhHHHHHHHHHHHHHHHhCCccCcHHHHHHHHHHhCCCccchhhhhhHHHHHHHHHHhCCCeeeCCCcccchH
Confidence            98887888999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCCHHHHHHHHhhhC
Q 001442         1018 IVSVFAEILCGKDLATEQTLSRIVNLLKQLQQTLPPATLASTWSSLQPQQQLALQSILS 1076 (1076)
Q Consensus      1018 i~~~~~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~l~~~~~ 1076 (1076)
                      |+.++.+.+.+.+...+++..++..+++++.+  |...|.+.|++||++++++||+.|+
T Consensus      1018 i~~v~~~~~~~~~~~~~~~~~r~~~ilkq~~~--~~~~~~~~~~~L~~~~~~~lq~~~~ 1074 (1075)
T KOG2171|consen 1018 ILSVCAESLADKKIEPRSTLARVIEILKQFLA--PPSQFAALLATLPPDQQQALQAVLN 1074 (1075)
T ss_pred             HHHHHHhhhhccCCCccchHHHHHHHHHHHhc--CHHHHHHHHHhCCHHHHHHHHHHhc
Confidence            99999999997777777777799999999988  5555999999999999999999873

>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]	Back alignment and domain information

>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]	Back alignment and domain information

>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]	Back alignment and domain information

>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]	Back alignment and domain information

>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]	Back alignment and domain information

>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]	Back alignment and domain information

>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]	Back alignment and domain information

>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG2022 consensus Nuclear transport receptor LGL2 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]	Back alignment and domain information

>KOG0915 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>PLN03200 cellulose synthase-interactive protein; Provisional	Back alignment and domain information

>KOG0915 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>KOG2021 consensus Nuclear mRNA export factor receptor LOS1/Exportin-t (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport; Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>PLN03200 cellulose synthase-interactive protein; Provisional	Back alignment and domain information

>COG5657 CSE1 CAS/CSE protein involved in chromosome segregation [Cell division and chromosome partitioning]	Back alignment and domain information

>COG5101 CRM1 Importin beta-related nuclear transport receptor [Nuclear structure / Intracellular trafficking and secretion]	Back alignment and domain information

>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]	Back alignment and domain information

>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG0212 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>KOG0212 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>KOG1248 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>KOG1248 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>KOG2081 consensus Nuclear transport regulator [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]	Back alignment and domain information

>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment	Back alignment and domain information

>PTZ00429 beta-adaptin; Provisional	Back alignment and domain information

>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment	Back alignment and domain information

>PTZ00429 beta-adaptin; Provisional	Back alignment and domain information

>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]	Back alignment and domain information

>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]	Back alignment and domain information

>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells	Back alignment and domain information

>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane	Back alignment and domain information

>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]	Back alignment and domain information

>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]	Back alignment and domain information

>PRK09687 putative lyase; Provisional	Back alignment and domain information

>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	Back alignment and domain information

>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells	Back alignment and domain information

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional	Back alignment and domain information

>PRK09687 putative lyase; Provisional	Back alignment and domain information

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional	Back alignment and domain information

>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]	Back alignment and domain information

>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins	Back alignment and domain information

>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]	Back alignment and domain information

>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair]	Back alignment and domain information

>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]	Back alignment and domain information

>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins	Back alignment and domain information

>PF03810 IBN_N: Importin-beta N-terminal domain; InterPro: IPR001494 Karyopherins are a group of proteins involved in transporting molecules through the pores of the nuclear envelope	Back alignment and domain information

>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]	Back alignment and domain information

>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []	Back alignment and domain information

>KOG2020 consensus Nuclear transport receptor CRM1/MSN5 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG2021 consensus Nuclear mRNA export factor receptor LOS1/Exportin-t (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport; Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG2032 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	Back alignment and domain information

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]	Back alignment and domain information

>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]	Back alignment and domain information

>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]	Back alignment and domain information

>cd00020 ARM Armadillo/beta-catenin-like repeats	Back alignment and domain information

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]	Back alignment and domain information

>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B	Back alignment and domain information

>KOG2022 consensus Nuclear transport receptor LGL2 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []	Back alignment and domain information

>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]	Back alignment and domain information

>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]	Back alignment and domain information

>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]	Back alignment and domain information

>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG2956 consensus CLIP-associating protein [General function prediction only]	Back alignment and domain information

>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]	Back alignment and domain information

>cd00020 ARM Armadillo/beta-catenin-like repeats	Back alignment and domain information

>KOG2956 consensus CLIP-associating protein [General function prediction only]	Back alignment and domain information

>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane	Back alignment and domain information

>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B	Back alignment and domain information

>KOG2259 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>KOG2259 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]	Back alignment and domain information

>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A	Back alignment and domain information

>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter	Back alignment and domain information

>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]	Back alignment and domain information

>KOG2933 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>KOG4653 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1	Back alignment and domain information

>PF08167 RIX1: rRNA processing/ribosome biogenesis	Back alignment and domain information

>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function	Back alignment and domain information

>KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair]	Back alignment and domain information

>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1	Back alignment and domain information

>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A	Back alignment and domain information

>KOG1410 consensus Nuclear transport receptor RanBP16 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []	Back alignment and domain information

>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PF13251 DUF4042: Domain of unknown function (DUF4042)	Back alignment and domain information

>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []	Back alignment and domain information

>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>KOG2032 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []	Back alignment and domain information

>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane	Back alignment and domain information

>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length	Back alignment and domain information

>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []	Back alignment and domain information

>KOG1822 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>KOG4653 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]	Back alignment and domain information

>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]	Back alignment and domain information

>PF05804 KAP: Kinesin-associated protein (KAP)	Back alignment and domain information

>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised	Back alignment and domain information

>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II	Back alignment and domain information

>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter	Back alignment and domain information

>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p []	Back alignment and domain information

>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms	Back alignment and domain information

>PF05804 KAP: Kinesin-associated protein (KAP)	Back alignment and domain information

>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional	Back alignment and domain information

>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II	Back alignment and domain information

>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function	Back alignment and domain information

>PF08167 RIX1: rRNA processing/ribosome biogenesis	Back alignment and domain information

>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription []	Back alignment and domain information

>KOG4524 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 []	Back alignment and domain information

>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain	Back alignment and domain information

>COG1413 FOG: HEAT repeat [Energy production and conversion]	Back alignment and domain information

>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]	Back alignment and domain information

>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms	Back alignment and domain information

>COG1413 FOG: HEAT repeat [Energy production and conversion]	Back alignment and domain information

>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain	Back alignment and domain information

>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]	Back alignment and domain information

>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]	Back alignment and domain information

>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1	Back alignment and domain information

>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional	Back alignment and domain information

>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised	Back alignment and domain information

>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>KOG1243 consensus Protein kinase [General function prediction only]	Back alignment and domain information

>KOG4524 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]	Back alignment and domain information

>KOG1837 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 []	Back alignment and domain information

>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments	Back alignment and domain information

>TIGR02270 conserved hypothetical protein	Back alignment and domain information

>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1	Back alignment and domain information

>PF12054 DUF3535: Domain of unknown function (DUF3535); InterPro: IPR022707 This presumed domain is functionally uncharacterised	Back alignment and domain information

>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments	Back alignment and domain information

>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>PF13251 DUF4042: Domain of unknown function (DUF4042)	Back alignment and domain information

>KOG2149 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>PF04510 DUF577: Family of unknown function (DUF577); InterPro: IPR007598 This is a family of Arabidopsis thaliana (Mouse-ear cress) proteins	Back alignment and domain information

>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES)	Back alignment and domain information

>TIGR02270 conserved hypothetical protein	Back alignment and domain information

>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]	Back alignment and domain information

>PF04118 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 DopA is the founding member of the Dopey family and is required for correct cell morphology and spatiotemporal organisation of multicellular structures in the filamentous fungus Emericella nidulans (Aspergillus nidulans)	Back alignment and domain information

>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]	Back alignment and domain information

>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3	Back alignment and domain information

>KOG1851 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>KOG2933 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]	Back alignment and domain information

>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length	Back alignment and domain information

>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism	Back alignment and domain information

>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]	Back alignment and domain information

>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p []	Back alignment and domain information

>COG5095 TAF6 Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]	Back alignment and domain information

>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES)	Back alignment and domain information

>COG5095 TAF6 Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]	Back alignment and domain information

>KOG2137 consensus Protein kinase [Signal transduction mechanisms]	Back alignment and domain information

>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length	Back alignment and domain information

>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism	Back alignment and domain information

>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]	Back alignment and domain information

>KOG2137 consensus Protein kinase [Signal transduction mechanisms]	Back alignment and domain information

>KOG1243 consensus Protein kinase [General function prediction only]	Back alignment and domain information

>PF10363 DUF2435: Protein of unknown function (DUF2435)	Back alignment and domain information

>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length	Back alignment and domain information

>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3	Back alignment and domain information

>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]	Back alignment and domain information

>KOG2149 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>PF10363 DUF2435: Protein of unknown function (DUF2435)	Back alignment and domain information

>KOG1949 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex	Back alignment and domain information

>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex	Back alignment and domain information

>PF05536 Neurochondrin: Neurochondrin	Back alignment and domain information

>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]	Back alignment and domain information

>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription []	Back alignment and domain information

>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG1949 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]	Back alignment and domain information

>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]	Back alignment and domain information

>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM	Back alignment and domain information

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>PF05536 Neurochondrin: Neurochondrin	Back alignment and domain information

>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]	Back alignment and domain information

>smart00638 LPD_N Lipoprotein N-terminal Domain	Back alignment and domain information

>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]	Back alignment and domain information

>PF12054 DUF3535: Domain of unknown function (DUF3535); InterPro: IPR022707 This presumed domain is functionally uncharacterised	Back alignment and domain information

>KOG3961 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>KOG0803 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]	Back alignment and domain information

>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless	Back alignment and domain information

>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane	Back alignment and domain information

>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane	Back alignment and domain information

>PF04118 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 DopA is the founding member of the Dopey family and is required for correct cell morphology and spatiotemporal organisation of multicellular structures in the filamentous fungus Emericella nidulans (Aspergillus nidulans)	Back alignment and domain information

>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []	Back alignment and domain information

>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule)	Back alignment and domain information

>PF08161 NUC173: NUC173 domain; InterPro: IPR012978 This is the central domain of a novel family of hypothetical nucleolar proteins []	Back alignment and domain information

>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]	Back alignment and domain information

>smart00638 LPD_N Lipoprotein N-terminal Domain	Back alignment and domain information

>PF12333 Ipi1_N: Rix1 complex component involved in 60S ribosome maturation; InterPro: IPR024679 This domain is found in IPI1, which is a component of the Rix1 complex involved in pre-rRNA-processing [, ]	Back alignment and domain information

>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless	Back alignment and domain information

>KOG1877 consensus Putative transmembrane protein cmp44E [General function prediction only]	Back alignment and domain information

>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term	Back alignment and domain information

>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane	Back alignment and domain information

>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein)	Back alignment and domain information

>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein)	Back alignment and domain information

>KOG1848 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting)	Back alignment and domain information

>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]	Back alignment and domain information

>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane	Back alignment and domain information

>smart00288 VHS Domain present in VPS-27, Hrs and STAM	Back alignment and domain information

>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []	Back alignment and domain information

>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]	Back alignment and domain information

>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal	Back alignment and domain information

>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG2081 consensus Nuclear transport regulator [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting)	Back alignment and domain information

>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length	Back alignment and domain information

>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane	Back alignment and domain information

>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM	Back alignment and domain information

>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins	Back alignment and domain information

>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion	Back alignment and domain information

>PF11919 DUF3437: Domain of unknown function (DUF3437); InterPro: IPR021843 This presumed domain is functionally uncharacterised	Back alignment and domain information

>smart00288 VHS Domain present in VPS-27, Hrs and STAM	Back alignment and domain information

>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule)	Back alignment and domain information

>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein	Back alignment and domain information

>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []	Back alignment and domain information

>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis	Back alignment and domain information

>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]	Back alignment and domain information

>PF08146 BP28CT: BP28CT (NUC211) domain; InterPro: IPR012954 This C-terminal domain is found in BAP28-like nucleolar proteins []	Back alignment and domain information

>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins	Back alignment and domain information

>PF12333 Ipi1_N: Rix1 complex component involved in 60S ribosome maturation; InterPro: IPR024679 This domain is found in IPI1, which is a component of the Rix1 complex involved in pre-rRNA-processing [, ]	Back alignment and domain information

>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins	Back alignment and domain information

>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]	Back alignment and domain information

>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised	Back alignment and domain information

>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		1076
2ot8_A		852	Karyopherin Beta2TRANSPORTIN-Hnrnpm Nls Complex Len		2e-05
2h4m_A		865	Karyopherin Beta2TRANSPORTIN-M9nls Length = 865		3e-04

>pdb|2OT8|A Chain A, Karyopherin Beta2TRANSPORTIN-Hnrnpm Nls Complex Length = 852

Back alignment and structure

Iteration: 1

Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 111/487 (22%), Positives = 184/487 (37%), Gaps = 47/487 (9%) Query: 71 PEARAMAAVLLRKLLTRDDSFLWPRLSLHTQSSLKSMLLQSIQLESAKSISKKLCDTVSE 130 P RA +L+ + ++ + WP L S L S + E A +K+C+ +E Sbjct: 104 PLIRATVGILITTIASKGELQNWPDLLPKLCSLLDSEDYNTC--EGAFGALQKICEDSAE 161 Query: 131 LASNILPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQLIINFIQCLTSSADRDRFQDL 190 + + + + ++P Q S K++ A Q II+ Q L D ++L Sbjct: 162 ILDSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQALMLHID-SFIENL 220 Query: 191 LPLMMRTLTESLNNGNXXXXXXXXXXXXXXXGTEPRFLRR--QLVDVVGSMLQIAEAESL 248 L G+ E R R + ++V MLQ + Sbjct: 221 FALA----------GDEEPEVRKNVCRALVMLLEVRMDRLLPHMHNIVEYMLQ--RTQDQ 268 Query: 249 EEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSAETED 308 +E A EF +TLAE ++R LP +L +L++ + + D + + E Sbjct: 269 DENVALEACEFWLTLAEQPICKDVLVRHLP----KLIPVLVNGMKYSDIDIILLKGDVEG 324 Query: 309 EDAGES--SNYSVGQEC----LDRLAIALGGNTIVPVASEQLPAYLAAPEWXXXXXXXXX 362 G+ S++++ ++C LD LA + + ++P L L EW Sbjct: 325 GSGGDDTISDWNL-RKCSAAALDVLA-NVYRDELLPHILPLLKELLFHHEWVVKESGILV 382 Query: 363 XXXXXEGCAKVMVKNLEQVLSMVLNSFRDPHPRVR----WAAINAIGQLSTDLGPDLQNQ 418 EGC + M+ L +++ ++ D VR W ++ PD Sbjct: 383 LGAIAEGCMQGMIPYLPELIPHLIQCLSDKKALVRSITCW-TLSRYAHWVVSQPPD--TY 439 Query: 419 FHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGK 478 P + L +D N RVQ A SA E E L PYL I+ L+ + Sbjct: 440 LKPLMTELLKRILD--SNKRVQEAACSAFATLEEEACTE-LVPYLAYILDTLVFAFSKYQ 496 Query: 479 QMVQEGALTALASVADSSQEHFQK--YYDAVMPFL--KAILVNATDKSNRMLRAKSMECI 534 A+ ++ADS H K Y +MP L K ++ DK L +EC+ Sbjct: 497 HKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKWNMLKDEDKDLFPL----LECL 552 Query: 535 SLVGMAV 541 S V A+ Sbjct: 553 SSVATAL 559

PyMOL of 2ot8

>pdb|2H4M|A Chain A, Karyopherin Beta2TRANSPORTIN-M9nls Length = 865

Back alignment and structure

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		1076
2bpt_A		861	Importin beta-1 subunit; nuclear transport, nucleo	1e-130
2bpt_A		861	Importin beta-1 subunit; nuclear transport, nucleo	1e-22
4fdd_A		852	Transportin-1; heat repeats, karyopherin, nuclear	1e-114
4fdd_A		852	Transportin-1; heat repeats, karyopherin, nuclear	5e-39
1qgr_A		876	Protein (importin beta subunit); transport recepto	1e-102
1qgr_A		876	Protein (importin beta subunit); transport recepto	1e-19
1ibr_B		462	P95, importin beta-1 subunit, nuclear factor; smal	7e-61
1ibr_B		462	P95, importin beta-1 subunit, nuclear factor; smal	2e-05
2x1g_F		971	Cadmus; transport protein, developmental protein,	8e-37
2x19_B		963	Importin-13; nuclear transport, protein transport;	3e-31
1u6g_C		1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	3e-22
1u6g_C		1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	1e-21
1b3u_A		588	Protein (protein phosphatase PP2A); scaffold prote	5e-17
1b3u_A		588	Protein (protein phosphatase PP2A); scaffold prote	1e-15
1b3u_A		588	Protein (protein phosphatase PP2A); scaffold prote	9e-14
1b3u_A		588	Protein (protein phosphatase PP2A); scaffold prote	3e-13
1b3u_A		588	Protein (protein phosphatase PP2A); scaffold prote	4e-05
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-16
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-16
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-14
1wa5_C		960	Importin alpha RE-exporter; nuclear transport/comp	2e-13
3m1i_C		1049	Exportin-1; heat repeat, GTP-binding, nucleotide-b	6e-13
3m1i_C		1049	Exportin-1; heat repeat, GTP-binding, nucleotide-b	2e-09
3gjx_A		1073	Exportin-1; transport, cytoplasm, nucleus, RNA-bin	1e-11
3gjx_A		1073	Exportin-1; transport, cytoplasm, nucleus, RNA-bin	6e-07
3a6p_A		1204	Exportin-5; exportin-5, RANGTP, nuclearexport, imp	9e-10
3ibv_A		980	Exportin-T; karyopherin, heat repeat, cytoplasm, n	2e-09
1wa5_B		530	Importin alpha subunit; nuclear transport/complex,	1e-07
1wa5_B		530	Importin alpha subunit; nuclear transport/complex,	9e-07
1wa5_B		530	Importin alpha subunit; nuclear transport/complex,	4e-06
1wa5_B		530	Importin alpha subunit; nuclear transport/complex,	1e-04
1wa5_B		530	Importin alpha subunit; nuclear transport/complex,	1e-04
2z6g_A		780	B-catenin; FULL-length, beta-catenin, cell adhesio	3e-07
2z6g_A		780	B-catenin; FULL-length, beta-catenin, cell adhesio	1e-04
2z6g_A		780	B-catenin; FULL-length, beta-catenin, cell adhesio	4e-04
3ltj_A		201	Alpharep-4; protein engineering, heat-like repeat,	4e-07
3ltj_A		201	Alpharep-4; protein engineering, heat-like repeat,	3e-06
3ltj_A		201	Alpharep-4; protein engineering, heat-like repeat,	2e-05
3ltj_A		201	Alpharep-4; protein engineering, heat-like repeat,	7e-05
3ltm_A		211	Alpha-REP4; protein engineering, heat-like repeat,	5e-07
3ltm_A		211	Alpha-REP4; protein engineering, heat-like repeat,	9e-06
2db0_A		253	253AA long hypothetical protein; heat repeats, hel	5e-07
2db0_A		253	253AA long hypothetical protein; heat repeats, hel	1e-06
2db0_A		253	253AA long hypothetical protein; heat repeats, hel	2e-06
2db0_A		253	253AA long hypothetical protein; heat repeats, hel	8e-05
1jdh_A		529	Beta-catenin; beta-catenin, protein-protein comple	6e-07
1jdh_A		529	Beta-catenin; beta-catenin, protein-protein comple	9e-06
1jdh_A		529	Beta-catenin; beta-catenin, protein-protein comple	6e-05
1jdh_A		529	Beta-catenin; beta-catenin, protein-protein comple	2e-04
2jdq_A		450	Importin alpha-1 subunit; transport, PB2 subunit,	7e-07
2jdq_A		450	Importin alpha-1 subunit; transport, PB2 subunit,	1e-06
2jdq_A		450	Importin alpha-1 subunit; transport, PB2 subunit,	8e-06
2jdq_A		450	Importin alpha-1 subunit; transport, PB2 subunit,	3e-05
4db8_A		252	Armadillo-repeat protein; solenoid repeat, de novo	1e-06
4db8_A		252	Armadillo-repeat protein; solenoid repeat, de novo	8e-05
4db8_A		252	Armadillo-repeat protein; solenoid repeat, de novo	6e-04
3now_A		810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	2e-06
3now_A		810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	2e-04
2qk2_A		242	LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2	2e-06
2qk2_A		242	LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2	4e-05
2qk2_A		242	LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2	7e-04
2qk1_A		249	Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h	3e-06
1oyz_A		280	Hypothetical protein YIBA; structural genomics, PS	4e-06
1oyz_A		280	Hypothetical protein YIBA; structural genomics, PS	4e-04
1xqr_A		296	HSPBP1 protein; armadillo repeat, superhelical twi	6e-06
2z6h_A		644	Catenin beta-1, beta-catenin; C-terminal domain, a	6e-06
2z6h_A		644	Catenin beta-1, beta-catenin; C-terminal domain, a	8e-06
2z6h_A		644	Catenin beta-1, beta-catenin; C-terminal domain, a	2e-05
3oqs_A		510	Importin subunit alpha-2; importin alpha, karyophe	7e-06
3oqs_A		510	Importin subunit alpha-2; importin alpha, karyophe	1e-05
3oqs_A		510	Importin subunit alpha-2; importin alpha, karyophe	5e-05
1te4_A		131	Conserved protein MTH187; methanobacterium thermoa	2e-05
3l6x_A		584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	2e-05
3l6x_A		584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	5e-04
4db6_A		210	Armadillo repeat protein; solenoid repeat, armadil	2e-05
4db6_A		210	Armadillo repeat protein; solenoid repeat, armadil	3e-04
2vgl_B		591	AP-2 complex subunit beta-1; cytoplasmic vesicle,	3e-05
2iw3_A		986	Elongation factor 3A; acetylation, ATP-binding, pr	7e-04
3nmz_A		458	APC variant protein; protein-protein complex, arma	7e-04

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Length = 861	Back alignment and structure

 Score =  415 bits (1067), Expect = e-130
 Identities = 136/856 (15%), Positives = 292/856 (34%), Gaps = 91/856 (10%)

Query: 25  ETLISHLMSTSNEQRSEAE-LLFNLCKQQDPDSLTLKLAHLLQRSPHPEARAMAAVLLRK 83
           + L + ++S     R  +E  L  L          L    L+  +   E R +AA+ L+ 
Sbjct: 8   QLLENSILSPDQNIRLTSETQLKKLSNDNFLQFAGLSSQVLIDENTKLEGRILAALTLKN 67

Query: 84  LLTRDDSF--------LWPRLSLHTQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNI 135
            L   DS            ++S   ++ +K+  L ++       I+      ++ +A   
Sbjct: 68  ELVSKDSVKTQQFAQRWITQVSPEAKNQIKTNALTALV-SIEPRIANAAAQLIAAIADIE 126

Query: 136 LPENGWPELLPFMFQCVSSDSVK-LQESAFLIFAQL------------------------ 170
           LP   WPEL+  M     ++  + ++ ++ L    +                        
Sbjct: 127 LPHGAWPELMKIMVDNTGAEQPENVKRASLLALGYMCESADPQSQALVSSSNNILIAIVQ 186

Query: 171 ---------------IINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALE 215
                          +      L    +    +     +M+ + E+    +      A  
Sbjct: 187 GAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEATQAEDIEVQAAAFG 246

Query: 216 LLIELAGTEPRFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMR 275
            L ++      F++  +   +   L IA  +S  +    + +EF  T+ E        + 
Sbjct: 247 CLCKIMSKYYTFMKPYMEQALY-ALTIATMKSPNDKVASMTVEFWSTICEEEIDIAYELA 305

Query: 276 KLPQFINRLFAILMSMLLDIEDDPL-WHSAETEDEDAGESSNYSVGQECLDRLAIALGGN 334
           + PQ   + +   +S + D+  + L   + + ED +  + +       CL   A    GN
Sbjct: 306 QFPQSPLQSYNFALSSIKDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFA-QNCGN 364

Query: 335 TIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKN-LEQVLSMVLNSFRDPH 393
            I+    E +   + A  W+   AA++A   I +G  KV     + Q L  +LN   D  
Sbjct: 365 HILEPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVHQALPSILNLMNDQS 424

Query: 394 PRVRWAAINAIGQLSTDLGPDLQNQFH-PQVLPALAGAMDDFQNPRVQAHAASAVLNFSE 452
            +V+      IG+++  +   +  Q H P V+ A    + D  +P+V  + +  ++N  E
Sbjct: 425 LQVKETTAWCIGRIADSVAESIDPQQHLPGVVQACLIGLQD--HPKVATNCSWTIINLVE 482

Query: 453 NCTPEILTPYLDGIVSKLLVLLQ-----NGKQMVQEGALTALASVADSSQEHFQKYYDAV 507
                  +P  +   + +  L+      + +   +  A +AL ++ + + +   +   ++
Sbjct: 483 QLAEATPSPIYNFYPALVDGLIGAANRIDNEFNARASAFSALTTMVEYATDTVAETSASI 542

Query: 508 MPFLKAILVNATDKSNRMLRAKS------MECISLVGMAVGKDKFRDDAKQVMEVLMSLQ 561
             F+   L          L  +       ++   L  +A    K     + V ++LM L 
Sbjct: 543 STFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVADMLMGLF 602

Query: 562 GSQMETDDPTT--SYMLQAWARLCKCLGQDFLPYMSVVMPPLLQSAQ-LKPDVTITSADS 618
              +E  D       +  A + L   LG+ F  Y+    P LL++   +   V+IT+   
Sbjct: 603 FRLLEKKDSAFIEDDVFYAISALAASLGKGFEKYLETFSPYLLKALNQVDSPVSITAVGF 662

Query: 619 DNEIEDSDDDSM-----ETITLGDKRIGIKTSVLEEKATACNMLCCYADELKEGFFPWID 673
             +I +S ++         + +  + I    +  E K    ++    A  +   F P+++
Sbjct: 663 IADISNSLEEDFRRYSDAMMNVLAQMISNPNARRELKPAVLSVFGDIASNIGADFIPYLN 722

Query: 674 QVAPTLVPLLKFYFHEEVRKAAVSAMPELLRSAKLAIEKGLAPGRNES------YVKQLS 727
            +    V            +A        +  A L    G+  G ++       YV  + 
Sbjct: 723 DIMALCVAAQNTKPENGTLEAL--DYQIKVLEAVLDAYVGIVAGLHDKPEALFPYVGTIF 780

Query: 728 DFIIPALVEALHKEPDTEICASMLDSLNECI-----QISGPLLDEGQVRSIVDEIKQVIT 782
            FI   + E      +     + +  + +               +  V   +   +    
Sbjct: 781 QFIA-QVAEDPQLYSEDATSRAAVGLIGDIAAMFPDGSIKQFYGQDWVIDYIKRTRSG-Q 838

Query: 783 ASSSRKRERAERAKAE 798
             S   ++ A  A+ +
Sbjct: 839 LFSQATKDTARWAREQ 854

PyMOL of 2bpt

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Length = 861	Back alignment and structure

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Length = 852	Back alignment and structure

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Length = 852	Back alignment and structure

>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A Length = 876	Back alignment and structure

>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A Length = 876	Back alignment and structure

>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A Length = 462	Back alignment and structure

>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A Length = 462	Back alignment and structure

>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster} Length = 971	Back alignment and structure

>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B Length = 963	Back alignment and structure

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Length = 1230	Back alignment and structure

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Length = 1230	Back alignment and structure

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588	Back alignment and structure

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588	Back alignment and structure

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588	Back alignment and structure

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588	Back alignment and structure

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A Length = 960	Back alignment and structure

>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B Length = 1049	Back alignment and structure

>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B Length = 1049	Back alignment and structure

>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A Length = 1073	Back alignment and structure

>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A Length = 1073	Back alignment and structure

>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens} Length = 1204	Back alignment and structure

>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T* Length = 980	Back alignment and structure

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530	Back alignment and structure

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530	Back alignment and structure

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530	Back alignment and structure

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530	Back alignment and structure

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530	Back alignment and structure

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780	Back alignment and structure

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780	Back alignment and structure

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780	Back alignment and structure

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Length = 201	Back alignment and structure

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Length = 201	Back alignment and structure

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Length = 201	Back alignment and structure

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Length = 201	Back alignment and structure

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Length = 211	Back alignment and structure

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Length = 211	Back alignment and structure

>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Length = 253	Back alignment and structure

>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Length = 253	Back alignment and structure

>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Length = 253	Back alignment and structure

>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Length = 253	Back alignment and structure

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529	Back alignment and structure

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529	Back alignment and structure

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529	Back alignment and structure

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529	Back alignment and structure

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450	Back alignment and structure

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450	Back alignment and structure

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450	Back alignment and structure

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450	Back alignment and structure

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252	Back alignment and structure

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252	Back alignment and structure

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252	Back alignment and structure

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810	Back alignment and structure

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810	Back alignment and structure

>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} Length = 242	Back alignment and structure

>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} Length = 242	Back alignment and structure

>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} Length = 242	Back alignment and structure

>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} Length = 249	Back alignment and structure

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Length = 280	Back alignment and structure

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Length = 280	Back alignment and structure

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296	Back alignment and structure

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644	Back alignment and structure

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644	Back alignment and structure

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644	Back alignment and structure

>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510	Back alignment and structure

>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510	Back alignment and structure

>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510	Back alignment and structure

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 Length = 131	Back alignment and structure

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584	Back alignment and structure

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584	Back alignment and structure

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210	Back alignment and structure

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210	Back alignment and structure

>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B Length = 591	Back alignment and structure

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986	Back alignment and structure

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		1076
d2bpta1		861	a.118.1.1 (A:1-861) Importin beta {Baker's yeast (	5e-65
d1qgra_		876	a.118.1.1 (A:) Importin beta {Human (Homo sapiens)	3e-57
d1qgra_		876	a.118.1.1 (A:) Importin beta {Human (Homo sapiens)	3e-14
d1qbkb_		888	a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapi	1e-52
d1qbkb_		888	a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapi	3e-31
d1ibrb_		458	a.118.1.1 (B:) Importin beta {Human (Homo sapiens)	2e-39
d1ibrb_		458	a.118.1.1 (B:) Importin beta {Human (Homo sapiens)	6e-09
d1ibrb_		458	a.118.1.1 (B:) Importin beta {Human (Homo sapiens)	3e-05
d1wa5c_		959	a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Sacc	4e-31
d1u6gc_		1207	a.118.1.2 (C:) Cullin-associated NEDD8-dissociated	4e-21
d1u6gc_		1207	a.118.1.2 (C:) Cullin-associated NEDD8-dissociated	1e-17
d1u6gc_		1207	a.118.1.2 (C:) Cullin-associated NEDD8-dissociated	3e-14
d1u6gc_		1207	a.118.1.2 (C:) Cullin-associated NEDD8-dissociated	7e-14
d1u6gc_		1207	a.118.1.2 (C:) Cullin-associated NEDD8-dissociated	1e-13
d1u6gc_		1207	a.118.1.2 (C:) Cullin-associated NEDD8-dissociated	1e-07
d1b3ua_		588	a.118.1.2 (A:) Constant regulatory domain of prote	5e-12
d1b3ua_		588	a.118.1.2 (A:) Constant regulatory domain of prote	1e-10
d1b3ua_		588	a.118.1.2 (A:) Constant regulatory domain of prote	3e-08
d1b3ua_		588	a.118.1.2 (A:) Constant regulatory domain of prote	7e-04
d1q1sc_		434	a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus	1e-11
d2vglb_		579	a.118.1.10 (B:) Adaptin beta subunit N-terminal fr	8e-08
d2vglb_		579	a.118.1.10 (B:) Adaptin beta subunit N-terminal fr	2e-04
d2vglb_		579	a.118.1.10 (B:) Adaptin beta subunit N-terminal fr	0.004
d1wa5b_		503	a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (S	5e-07
d2vgla_		584	a.118.1.10 (A:) Adaptin alpha C subunit N-terminal	1e-06
d2vgla_		584	a.118.1.10 (A:) Adaptin alpha C subunit N-terminal	2e-04
d1xm9a1		457	a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo	8e-06

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 861	Back information, alignment and structure


class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  234 bits (597), Expect = 5e-65
 Identities = 130/858 (15%), Positives = 283/858 (32%), Gaps = 95/858 (11%)

Query: 25  ETLISHLMSTSNEQRSEAE-LLFNLCKQQDPDSLTLKLAHLLQRSPHPEARAMAAVLLRK 83
           + L + ++S     R  +E  L  L          L    L+  +   E R +AA+ L+ 
Sbjct: 8   QLLENSILSPDQNIRLTSETQLKKLSNDNFLQFAGLSSQVLIDENTKLEGRILAALTLKN 67

Query: 84  LLTRDDS--------FLWPRLSLHTQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNI 135
            L   DS            ++S   ++ +K+  L ++       I+      ++ +A   
Sbjct: 68  ELVSKDSVKTQQFAQRWITQVSPEAKNQIKTNALTALV-SIEPRIANAAAQLIAAIADIE 126

Query: 136 LPENGWPELLPFMFQCVSS-DSVKLQESAFLIFAQL------------------------ 170
           LP   WPEL+  M     +     ++ ++ L    +                        
Sbjct: 127 LPHGAWPELMKIMVDNTGAEQPENVKRASLLALGYMCESADPQSQALVSSSNNILIAIVQ 186

Query: 171 ---------------IINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALE 215
                          +      L    +    +     +M+ + E+    +      A  
Sbjct: 187 GAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEATQAEDIEVQAAAFG 246

Query: 216 LLIELAGTEPRFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMR 275
            L ++      F++  +   +   L IA  +S  +    + +EF  T+ E        + 
Sbjct: 247 CLCKIMSKYYTFMKPYMEQAL-YALTIATMKSPNDKVASMTVEFWSTICEEEIDIAYELA 305

Query: 276 KLPQFINRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAIALGGNT 335
           + PQ   + +   +S + D+  + L       ++   +  N S+      +L     GN 
Sbjct: 306 QFPQSPLQSYNFALSSIKDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCGNH 365

Query: 336 IVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKN-LEQVLSMVLNSFRDPHP 394
           I+    E +   + A  W+   AA++A   I +G  KV     + Q L  +LN   D   
Sbjct: 366 ILEPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVHQALPSILNLMNDQSL 425

Query: 395 RVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENC 454
           +V+      IG+++  +   +  Q H   +           +P+V  + +  ++N  E  
Sbjct: 426 QVKETTAWCIGRIADSVAESIDPQQHLPGVVQACLIGLQ-DHPKVATNCSWTIINLVEQL 484

Query: 455 TPEILTPYLDGIVSKLLVLLQNGKQ-----MVQEGALTALASVADSSQEHFQKYYDAVMP 509
                +P  +   + +  L+    +       +  A +AL ++ + + +   +   ++  
Sbjct: 485 AEATPSPIYNFYPALVDGLIGAANRIDNEFNARASAFSALTTMVEYATDTVAETSASIST 544

Query: 510 FLKAILVNATDKSNRMLRAKS------MECISLVGMAVGKDKFRDDAKQVMEVLMSLQGS 563
           F+   L          L  +       ++   L  +A    K     + V ++LM L   
Sbjct: 545 FVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVADMLMGLFFR 604

Query: 564 QMETDDPTT--SYMLQAWARLCKCLGQDFLPYMSVVMPPLLQSAQ-LKPDVTITSADSDN 620
            +E  D       +  A + L   LG+ F  Y+    P LL++   +   V+IT+     
Sbjct: 605 LLEKKDSAFIEDDVFYAISALAASLGKGFEKYLETFSPYLLKALNQVDSPVSITAVGFIA 664

Query: 621 EIEDSDDDSM-----ETITLGDKRIGIKTSVLEEKATACNMLCCYADELKEGFFPWIDQV 675
           +I +S ++         + +  + I    +  E K    ++    A  +   F P+++ +
Sbjct: 665 DISNSLEEDFRRYSDAMMNVLAQMISNPNARRELKPAVLSVFGDIASNIGADFIPYLNDI 724

Query: 676 APTLVPLLKFYFH----------EEVRKAAVSAMPELLRSAKLAIEKGLAPGRNESYVKQ 725
               V                   +V +A + A   ++       E  L P     YV  
Sbjct: 725 MALCVAAQNTKPENGTLEALDYQIKVLEAVLDAYVGIVAGLHDKPEA-LFP-----YVGT 778

Query: 726 LSDFIIPALVEALHKEPDTEICASMLDSLNECIQISG-----PLLDEGQVRSIVDEIKQV 780
           +  FI     +      +     + +  + +   +           +  V   +   +  
Sbjct: 779 IFQFIAQVAEDPQL-YSEDATSRAAVGLIGDIAAMFPDGSIKQFYGQDWVIDYIKRTRS- 836

Query: 781 ITASSSRKRERAERAKAE 798
               S   ++ A  A+ +
Sbjct: 837 GQLFSQATKDTARWAREQ 854

PyMOL of d2bpta1

>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Length = 876	Back information, alignment and structure

>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Length = 876	Back information, alignment and structure

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Length = 888	Back information, alignment and structure

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Length = 888	Back information, alignment and structure

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Length = 458	Back information, alignment and structure

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Length = 458	Back information, alignment and structure

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Length = 458	Back information, alignment and structure

>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 959	Back information, alignment and structure

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207	Back information, alignment and structure

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207	Back information, alignment and structure

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207	Back information, alignment and structure

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207	Back information, alignment and structure

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207	Back information, alignment and structure

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207	Back information, alignment and structure

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588	Back information, alignment and structure

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588	Back information, alignment and structure

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588	Back information, alignment and structure

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588	Back information, alignment and structure

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 434	Back information, alignment and structure

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 503	Back information, alignment and structure

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457	Back information, alignment and structure

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		1076
d1qbkb_		888	Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96	100.0
d2bpta1		861	Importin beta {Baker's yeast (Saccharomyces cerevi	100.0
d1qgra_		876	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1u6gc_		1207	Cullin-associated NEDD8-dissociated protein 1 (Tip	100.0
d1wa5c_		959	Exportin Cse1p {Baker's yeast (Saccharomyces cerev	100.0
d1u6gc_		1207	Cullin-associated NEDD8-dissociated protein 1 (Tip	100.0
d2bpta1		861	Importin beta {Baker's yeast (Saccharomyces cerevi	100.0
d1qgra_		876	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1qbkb_		888	Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96	100.0
d1ibrb_		458	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1b3ua_		588	Constant regulatory domain of protein phosphatase	100.0
d1b3ua_		588	Constant regulatory domain of protein phosphatase	100.0
d1wa5c_		959	Exportin Cse1p {Baker's yeast (Saccharomyces cerev	99.91
d2vglb_		579	Adaptin beta subunit N-terminal fragment {Human (H	99.9
d2vglb_		579	Adaptin beta subunit N-terminal fragment {Human (H	99.89
d1ibrb_		458	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	99.89
d1jdha_		529	beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}	99.79
d1q1sc_		434	Importin alpha {Mouse (Mus musculus) [TaxId: 10090	99.75
d1q1sc_		434	Importin alpha {Mouse (Mus musculus) [TaxId: 10090	99.74
d1wa5b_		503	Karyopherin alpha {Baker's yeast (Saccharomyces ce	99.73
d1jdha_		529	beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}	99.72
d2vgla_		584	Adaptin alpha C subunit N-terminal fragment {Mouse	99.69
d1wa5b_		503	Karyopherin alpha {Baker's yeast (Saccharomyces ce	99.68
d2vgla_		584	Adaptin alpha C subunit N-terminal fragment {Mouse	99.61
d1xqra1		264	Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi	99.14
d1oyza_		276	Hypothetical protein YibA {Escherichia coli [TaxId	99.12
d1xqra1		264	Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi	99.11
d1xm9a1		457	Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}	99.09
d1oyza_		276	Hypothetical protein YibA {Escherichia coli [TaxId	99.09
d1xm9a1		457	Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}	98.96
d1te4a_		111	MTH187 {Archaeon Methanobacterium thermoautotrophi	98.24
d1te4a_		111	MTH187 {Archaeon Methanobacterium thermoautotrophi	98.0
d1w9ca_		321	Exportin-1 (Xpo1, Crm1) {Human (Homo sapiens) [Tax	94.46
d1ho8a_		477	Regulatory subunit H of the V-type ATPase {Baker's	90.18
d1lrva_		233	Leucine-rich repeat variant {Azotobacter vinelandi	89.21
d1dvpa1		145	Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7	82.91

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=0  Score=598.08  Aligned_cols=790  Identities=19%  Similarity=0.247  Sum_probs=607.3

Q ss_pred             HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCC--CCCHHHHHHHHHHHHHHCCCCCCCCCCCCCH
Q ss_conf             28899999995089968989999999885500943899999999805--9998799999999997515588875667898
Q 001442           21 SAPFETLISHLMSTSNEQRSEAELLFNLCKQQDPDSLTLKLAHLLQR--SPHPEARAMAAVLLRKLLTRDDSFLWPRLSL   98 (1076)
Q Consensus        21 ~~~l~~lL~~~~s~d~~~r~~Ae~~L~~~~~~~p~~~~~~l~~il~~--~~~~~~R~~a~i~Lk~~i~~~~~~~w~~l~~   98 (1076)
                      .+++.++|+.++|||+++|++|+++|+++.+ +|+ +..+|..++..  +.+..+|++|+++|||.+.++    |..+++
T Consensus        10 l~ql~~~L~~~~s~d~~~r~~A~~~L~~~~~-~p~-~~~~L~~ll~~~~~~~~~~R~~A~i~Lkn~i~~~----w~~~~~   83 (888)
T d1qbkb_          10 LQQILQLLKESQSPDTTIQRTVQQKLEQLNQ-YPD-FNNYLIFVLTKLKSEDEPTRSLSGLILKNNVKAH----FQNFPN   83 (888)
T ss_dssp             HHHHHHHHTTCCHHHHHHHHHHTTSTTTSTT-STT-TTTCTTSSSTTTSCSTTTHHHHTTGGGGGTHHHH----TTCSTT
T ss_pred             HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH-CCC-HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH----HCCCCH
T ss_conf             9999999997639799999999999999773-998-9999999997457999899999999999999870----023999


Q ss_pred             HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH-----
Q ss_conf             689999999989984132266999999999999742169999401699999840299887899999999999999-----
Q 001442           99 HTQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQLIIN-----  173 (1076)
Q Consensus        99 ~~~~~i~~~Ll~~l~~e~~~~vr~~~~~~i~~ia~~~~~~~~w~~ll~~l~~~~~~~~~~~r~~al~~L~~l~~~-----  173 (1076)
                      +.++.||+.+++.+. ++++.+|+.++.+++.|++.+++ +.||+++|.|.+.+.+++...+++++.+|+.++..     
T Consensus        84 ~~~~~Ik~~ll~~l~-~~~~~vr~~~~~~i~~i~~~~~~-~~Wpell~~L~~~l~s~~~~~~~~al~~L~~i~e~~~~~~  161 (888)
T d1qbkb_          84 GVTDFIKSECLNNIG-DSSPLIRATVGILITTIASKGEL-QNWPDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEIL  161 (888)
T ss_dssp             TCCHHHHHHHTTGGG-CCCSSTTTTTTTTTHHHHTTTSS-CSSTTTSTTTTTSSTGGGSSCSSSSSTTTHHHHGGGHHHH
T ss_pred             HHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             999999999999982-99889999999999999987182-1129999999998679998999999999999999868876


Q ss_pred             ---------------HHHHHCCCC------H-----------HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q ss_conf             ---------------998508900------4-----------86776359999999999982799889999999999988
Q 001442          174 ---------------FIQCLTSSA------D-----------RDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELA  221 (1076)
Q Consensus       174 ---------------~~~~l~~~~------~-----------~~~~~~l~p~il~~l~~~~~~~~~~~~~~~~~~l~~l~  221 (1076)
                                     +++.+.++.      .           ...+...++.+++.+.....+++.++|..++++|..++
T Consensus       162 ~~~~~~~~~~~ll~~ll~~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~vr~~~~~~l~~l~  241 (888)
T d1qbkb_         162 DSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQALMLHIDSFTENLFALAGDEEPEVRKNVCRALVMLL  241 (888)
T ss_dssp             HTC---CCSTTTTHHHHTGGGSSSSCSSSTTTHHHHGGGGCCCSTTCSHHHHCSHHHHTTSSCCCSSSTTHHHHTTTTTS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
T ss_conf             07788879999999999986388889999999987778874038899999999998887607930677999999999899


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHCCCHHHHHHHHHHHHHHHCCCCCCC--
Q ss_conf             238688889499999999997327874456999999999999972102521220354469999999999423789983--
Q 001442          222 GTEPRFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDP--  299 (1076)
Q Consensus       222 ~~~~~~~~~~~~~i~~~ll~~~~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~dd~--  299 (1076)
                      +..++.+.+|+..++++++..+.  +.++++|..|+++|.++++....    .....++++.++|.+...+.+.+.+.  
T Consensus       242 ~~~~~~l~~~l~~i~~~~l~~~~--~~~e~v~~~a~ef~~~~~e~~~~----~~~~~~~l~~l~~~l~~~~~~~~~~~~~  315 (888)
T d1qbkb_         242 EVRMDRLLPHMHNIVEYMLQRTQ--DQDENVALEACEFWLTLAEQPIC----KDVLVRHLPKLIPVLVNGMKYSDIDIIL  315 (888)
T ss_dssp             CSCTTTTTTTTTTTTTTTTTTTT--SSCHHHHHHHHHHHCCCCSGGGG----TTTTTTSTTTTTTTTTTSSCCSSTTHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHCC--CCCHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHCCHHHHHH
T ss_conf             87678889988878999998628--98689999889999999971645----8999999999999999874212688998


Q ss_pred             ------CCCC-----------------------------------CCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCHH
Q ss_conf             ------3457-----------------------------------88987554777721059999999998749974358
Q 001442          300 ------LWHS-----------------------------------AETEDEDAGESSNYSVGQECLDRLAIALGGNTIVP  338 (1076)
Q Consensus       300 ------~~~~-----------------------------------~~~e~~d~~e~~~~~~a~~~l~~l~~~~~~~~~~~  338 (1076)
                            .+..                                   ..++++..++++.++++..+++.++..++ +.+++
T Consensus       316 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~a~~~L~~l~~~~~-~~il~  394 (888)
T d1qbkb_         316 LKGDVEEDETIPDSEQDIRPRFHRSRTVAQQHDEDGIEEEDDDDDEIDDDDTISDWNLRKCSAAALDVLANVYR-DELLP  394 (888)
T ss_dssp             HTTTSSCCTTSCCCGGGCCCCCCCCCCCCCCCTTC-----CHHHHTTCCCSTTSCCSSHHHHHHHSTTTTTTCC-SSSHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH
T ss_conf             85546654421425777788999999999874011121023103445443001133699999998766765129-99999


Q ss_pred             HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCHHHHHH
Q ss_conf             79878988446989669999999999998216899998299999999830789886689999999999664330437753
Q 001442          339 VASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQ  418 (1076)
Q Consensus       339 ~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~  418 (1076)
                      .+++.+.+.+++++|+.|++|++++|.+++++.+.+.++++++++.++..+.|+++.||.+++|++|+++++..+.....
T Consensus       395 ~~l~~l~~~l~s~~~~~reaa~~alg~i~eg~~~~~~~~l~~li~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~~~~~~~~  474 (888)
T d1qbkb_         395 HILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDT  474 (888)
T ss_dssp             HHHHHHHHTTTSSSHHHHHHHHHHHHHHTTTSHHHHTTTHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTHHHHHSSCHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99999887512205689999999864355557877421203556799984269989999999999999999866541565


Q ss_pred             HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             34415999995215899812898899999996402893333586489999999985058666999999999999998276
Q 001442          419 FHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQE  498 (1076)
Q Consensus       419 ~~~~il~~l~~~l~d~~~~~v~~~a~~aL~~l~~~~~~~~l~~~l~~il~~l~~~l~~~~~~v~~~al~ai~~l~~~~~~  498 (1076)
                      |+..+++.++..+.| ++++|+.+||++|..+++..+.. +.||++.+++.+...++......+..++.++++++...+.
T Consensus       475 ~~~~~l~~ll~~l~d-~~~~V~~~a~~al~~l~~~~~~~-l~p~~~~il~~l~~~l~~~~~~~~~~~~~al~~l~~~~~~  552 (888)
T d1qbkb_         475 YLKPLMTELLKRILD-SNKRVQEAACSAFATLEEEACTE-LVPYLAYILDTLVFAFSKYQHKNLLILYDAIGTLADSVGH  552 (888)
T ss_dssp             HTTTHHHHHHHHHSS-SCHHHHHHHHHHHHHHHHHHTTS-SGGGHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHGG
T ss_pred             HHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             545558999988428-98789998999999999875531-1357999999999998600377999999999999986231


Q ss_pred             HH--HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHH
Q ss_conf             57--8529556799999983017710346688999999999987360100563999999999983688999970248999
Q 001442          499 HF--QKYYDAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMAVGKDKFRDDAKQVMEVLMSLQGSQMETDDPTTSYML  576 (1076)
Q Consensus       499 ~~--~~~~~~i~~~L~~~l~~~~~~~~~~lr~~a~~~l~~i~~~~g~~~~~~~~~~ii~~l~~~~~~~~~~~~~~~~~~~  576 (1076)
                      .+  .+|++.+++.+...+....+.+ . .+..+++|++.++...| +.|.|+...+++.+.+....             
T Consensus       553 ~~~~~~~~~~l~~~l~~~~~~~~~~~-~-~~~~~le~l~~i~~~~~-~~~~~~~~~~~~~~~~~l~~-------------  616 (888)
T d1qbkb_         553 HLNKPEYIQMLMPPLIQKWNMLKDED-K-DLFPLLECLSSVATALQ-SGFLPYCEPVYQRCVNLVQK-------------  616 (888)
T ss_dssp             GGCSHHHHHHHHHHHHHHHTTSCTTC-T-THHHHHHHHHHHHHHST-TTTHHHHHHHHHHHHHHHHH-------------
T ss_pred             CCCCHHHHHHHHHHHHHHHHHCCCCH-H-HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH-------------
T ss_conf             01336799999999999997512106-8-89999999999999867-87765699999999988998-------------


Q ss_pred             HHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCEEEECCHHHHHHHHHHHH
Q ss_conf             99999998801685121366459999860679983335789875434789743102103891245201159899999999
Q 001442          577 QAWARLCKCLGQDFLPYMSVVMPPLLQSAQLKPDVTITSADSDNEIEDSDDDSMETITLGDKRIGIKTSVLEEKATACNM  656 (1076)
Q Consensus       577 ~~~~~l~~~~~~~~~~~l~~i~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~k~~A~~~  656 (1076)
                       .+.                  ..+.....  +.                                              
T Consensus       617 -~l~------------------~~~~~~~~--~~----------------------------------------------  629 (888)
T d1qbkb_         617 -TLA------------------QAMLNNAQ--PD----------------------------------------------  629 (888)
T ss_dssp             -HHH------------------HHHHHHHC--TT----------------------------------------------
T ss_pred             -HHH------------------HHHHHHCC--CC----------------------------------------------
T ss_conf             -999------------------99987416--20----------------------------------------------


Q ss_pred             HHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             99999993110345398789876000153277889999999899999999999980889999979999999999999999
Q 001442          657 LCCYADELKEGFFPWIDQVAPTLVPLLKFYFHEEVRKAAVSAMPELLRSAKLAIEKGLAPGRNESYVKQLSDFIIPALVE  736 (1076)
Q Consensus       657 L~~i~~~~~~~~~p~~~~~~~~l~~~l~~~~~~~ir~~a~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~  736 (1076)
                                                ..+....+                                              
T Consensus       630 --------------------------~~~~~~~~----------------------------------------------  637 (888)
T d1qbkb_         630 --------------------------QYEAPDKD----------------------------------------------  637 (888)
T ss_dssp             --------------------------TSCCCCTH----------------------------------------------
T ss_pred             --------------------------CCCCHHHH----------------------------------------------
T ss_conf             --------------------------11000688----------------------------------------------


Q ss_pred             HHCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH
Q ss_conf             97009929899999999999999849999998899999999999998887699999962187888576446345436699
Q 001442          737 ALHKEPDTEICASMLDSLNECIQISGPLLDEGQVRSIVDEIKQVITASSSRKRERAERAKAEDFDAEESELIKEENEQEE  816 (1076)
Q Consensus       737 ~l~~~~~~~~~~~~l~~l~~~i~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~ed~d~~~~~~~~~~~e~~~  816 (1076)
                                                                                                      
T Consensus       638 --------------------------------------------------------------------------------  637 (888)
T d1qbkb_         638 --------------------------------------------------------------------------------  637 (888)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
T ss_conf             --------------------------------------------------------------------------------


Q ss_pred             HHHHHHHHHHHHHHHHHHHCHHHHHHH--HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             999999999999999811220564888--887675321699998899999998999977723666753886999999663
Q 001442          817 EVFDQVGEILGTLIKTFKAAFLPFFDE--LSSYLTPMWGKDKTAEERRIAICIFDDVAEQCREAALKYYETYLPFLLEAC  894 (1076)
Q Consensus       817 ~~~~~~~~~l~~l~~~~~~~~~~~~~~--l~~~l~~~l~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~i~~~l~~~l  894 (1076)
                       .+..+.++++.+++..+..+.+++..  +.+.+...+ .+.++.+|..+++++++++..++..+.||.+.+++.+...+
T Consensus       638 -~~~~~l~~l~~l~~~l~~~~~~~~~~~~l~~~l~~~l-~~~~~~vr~~a~~llgdl~~~~~~~~~~~l~~~~~~l~~~L  715 (888)
T d1qbkb_         638 -FMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCM-QDKMPEVRQSSFALLGDLTKACFQHVKPCIADFMPILGTNL  715 (888)
T ss_dssp             -HHHHHHHHHHHHHHHHTTTTHHHHHTSCHHHHHHHHH-TCSSHHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHHTC
T ss_pred             -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             -9999999988899873056666665856999999996-79976899999999887787516877877999999999873


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCC--CHHHH
Q ss_conf             6999467766558997998512988168799999999985169987882446679899999999985527999--97649
Q 001442          895 NDENQDVRQAAVYGLGVCAEFGGSVVKPLVGEALSRLNVVIRHPNALQPENLMAYDNAVSALGKICQFHRDSI--DAAQV  972 (1076)
Q Consensus       895 ~~~~~~vr~~a~~~lg~l~~~~~~~~~~~~~~il~~L~~~l~~~~~~~~~~~~~~~na~~al~~l~~~~~~~~--~~~~~  972 (1076)
                      .++++.++.+|+|++|.++...++.+.||++.+++.|.+.+..++.    ...+++|++.|+||+...+|+.+  +++++
T Consensus       716 ~~~~~~v~~~a~~~ig~ia~~~~~~~~py~~~il~~L~~il~~~~~----~~~v~~n~~~~lgrl~~~~p~~~~~~l~~~  791 (888)
T d1qbkb_         716 NPEFISVCNNATWAIGEISIQMGIEMQPYIPMVLHQLVEIINRPNT----PKTLLENTAITIGRLGYVCPQEVAPMLQQF  791 (888)
T ss_dssp             CGGGHHHHHHHHHHHHHHHHHTGGGGGGGSHHHHHHHHHHHTCTTC----CHHHHHHHHHHHHHHHHHCHHHHGGGGGGT
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC----CHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_conf             8677899999999999999987798650599999999998769986----378999999999999987979888649999


Q ss_pred             HHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCC
Q ss_conf             99999609998857877999999999984059854486767545699999998357888888899999999999996189
Q 001442          973 VPAWLNCLPIKGDLIEAKIVHEQLCSMVERSDSDLLGPNHQYLPKIVSVFAEILCGKDLATEQTLSRIVNLLKQLQQTLP 1052 (1076)
Q Consensus       973 i~~~l~~lp~~~d~~e~~~~~~~l~~l~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~ 1052 (1076)
                      ++.|+..||...|.+|+..+|.++|.+++.+|+.+++    ++..++.+++.    +..+.++++..+.++|..+++.+|
T Consensus       792 ~~~~~~~l~~~~d~~ek~~~~~g~~~~i~~~p~~~~~----~l~~~~~~i~~----~~~~~~~~~~~~~~~l~~~~~~~~  863 (888)
T d1qbkb_         792 IRPWCTSLRNIRDNEEKDSAFRGICTMISVNPSGVIQ----DFIFFCDAVAS----WINPKDDLRDMFCKILHGFKNQVG  863 (888)
T ss_dssp             HHHHHHHHTTSCCSHHHHHHHHHHHHHHHHCGGGTGG----GHHHHHHHHTT----CSSCCHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCHHHHH----HHHHHHHHHHH----CCCCCHHHHHHHHHHHHHHHHHCC
T ss_conf             9999997263798189999999999999978498887----79999999970----379978999999999999998769


Q ss_pred             HHHHHHHHHCCCHHHHHHHHHHHC
Q ss_conf             456999984199999999996319
Q 001442         1053 PATLASTWSSLQPQQQLALQSILS 1076 (1076)
Q Consensus      1053 ~~~~~~~~~~l~~~~~~~l~~~~~ 1076 (1076)
                      +.+|+++++++||+.|++|++.|+
T Consensus       864 ~~~w~~~~~~~~~~~~~~l~~~y~  887 (888)
T d1qbkb_         864 DENWRRFSDQFPLPLKERLAAFYG  887 (888)
T ss_dssp             HHHHHHHHHSSCHHHHHHHHHHCC
T ss_pred             CHHHHHHHHCCCHHHHHHHHHHHC
T ss_conf             275999997599999999998629

PyMOL of d1qbkb_

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}	Back information, alignment and structure

>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}	Back information, alignment and structure

>d1w9ca_ a.118.1.19 (A:) Exportin-1 (Xpo1, Crm1) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1ho8a_ a.118.1.9 (A:) Regulatory subunit H of the V-type ATPase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]}	Back information, alignment and structure

>d1dvpa1 a.118.9.2 (A:1-145) Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}	Back information, alignment and structure