Citrus Sinensis ID: 001447

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030------1040------1050------1060------1070-----
Protein Sequence
MASPSSGRLAITPSSRVLQSPLSDESIWKRLKEAGLDEVSIKRRDKAALIAYIAKLETEIFEHQHHMGLLILEKKELASKYEQIKASAEAAELLQKHDRASHLSAIAEARKREESLKKTLGVEKECIASLEKAVHEIRAESAETKVAADSKFAEARCMVENAQKKFAEAEAKLHAAESLQAEANRYHRSAERKLQEVVAREDDLSRRIASFKADCEEKEREIIRERQSLSDRKKILQQEHERLLDAQTLLNEREDHILSKLQELSRKEKELEASRANVEEKFKALNEEKSNLDLTLVSLLKREEAVIEREASLQKKEQKLLVSQETLASKESNEIQKIIANHESALRVKQSEFEAELAIKYKLAEDEIEKKRRAWELRDLDLGQREESLLEREHDLEVQSRALVDKEKDLVERSHLLEEKENKLIAFEKEADLKKSLLQKEKEEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEAMKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVERVVVSKSLKDERDSLRQERDAMRDQHKRDVDSLNREREEFMNKMVHEHSEWFTKIQQERADFLLGIEMQKRDLENCIEKRREELESSFREREKAFEEEKMREFQQISSLKEKAEKELEQVTLEIKRLDLERMEINMDRQRRDREWAELNNSIEELMVQRQKLEEQRQLLHADREEIQAESERLKKLEDLKIAVDYMAVSEMQRSRLEHSQKKISAKRHLNQQTSLAHADLGSDQKFDVTNNGDRFNTPSVQKTASASPPSLARFSWIKRFADLVFKHSGENSVENDEEKSPTSDHEDASLTINSRKRQPVRYSFGEPKVILEVPSENEVVKRTVDLESENNQNAAQKCKQSVSEDGIHAARKRRVDVDCVDPSELLMQNNKRRKQQEDFPRNSSEEAINHGAVAEQSNLPEDQHTLTSKNKSNVPEGLHTLTSNNHTQGGNEEASILIVDKIIKISEVTCEMTDADNFINQEKIDGSQNSVAESVQDIVKVGGTNDHSTPAHTDDVVLPYISEIDGMVQEKQMGNVKDLTECE
Secondary Structure (PSIPRED)
cccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHccccccccccHHHHcccccccHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHccccccccccccccHHcccccHHHHHHHHHHHHHHHHHHHHHccHHccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHcccccHHHHHHHHHccccccHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHcHHHHHHHHHHHHHHcccccccccccccccccccHHHHcHHHHHHHccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccHHHHHcccccHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHcccccccccccccccEEEEEEcccccccccHccHHHHHHHHHHHHccccccHHHHHHHHccccccccccccHcccccccccccHHHHHccccHHccccccEEccccccccccccccccccccccccEEEccccccccccccccEEEEEEEEEEEEEEEEEEEccccccccccccccccEEEEcccEEEcccccccccccccccccccccccccHHHHHHHccccccccccc
Coil and Loop (DISEMBL)
maspssgrlaitpssrvlqsplsdESIWKRLKeagldevsiKRRDKAALIAYIAKLETEIFEHQHHMGLLILEKKELASKYEQIKASAEAAELLQKHDRASHLSAIAEARKREESLKKTLGVEKECIASLEKAVHEIRAEsaetkvaadsKFAEARCMVENAQKKFAEAEAKLHAAESLQAEANRYHRSAERKLQEVVAREDDLSRRIASFKADCEEKEREIIRERQSLSDRKKILQQEHERLLDAQTLLNEREDHILSKLQELSRKEKELEASRANVEEKFKALNEEKSNLDLTLVSLLKREEAVIEREASLQKKEQKLLVSQETLASKESNEIQKIIANHESALRVKQSEFEAELAIKYKLAEDEIEKKRRAWELRDLDLGQREESLLEREHDLEVQSRALVDKEKDLVERSHLLEEKENKLIAFEKEADLKKSLLQKEKEEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEAMKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVERVVVSKSLKDERDSLRQERDAMRDQHKRDVDSLNREREEFMNKMVHEHSEWFTKIQQERADFLLGIEMQKRDLENCIEKRREELESSFREREKAFEEEKMREFQQISSLKEKAEKELEQVTLEIKRLDLERMEINMDRQRRDREWAELNNSIEELMVQRQKLEEQRQLLHADREEIQAESERLKKLEDLKIAVDYMAVSEMQRSRLEHSQKKISAKRhlnqqtslahadlgsdqkfdvtnngdrfntpsvqktasasppslarFSWIKRFADLVFKhsgensvendeeksptsdhedasltinsrkrqpvrysfgepkvilevpsenevvKRTVDLESENNQNAAQKCKQSVSEDGIHAArkrrvdvdcvdpsellmQNNKRRkqqedfprnsseeainhgavaeqsnlpedqhtltsknksnvpeglhtltsnnhtqggneeaSILIVDKIIKISevtcemtdadnfinqekidgsqnsvAESVQDIVKvggtndhstpahtddvvlpYISEIDGMVQEKqmgnvkdltece
Flexible Loop (DISEMBL)
maspssgrlaitpssrvlqsplsdesIWKRLkeagldevsikrrDKAALIAYIAKLETEIFEHQHHMGLLILEKKELASKYEQIKASAEAAELLQKHDRASHLSAIAEARKREESLKKTLGVEKECIASLEKAVHEIRaesaetkvaadsKFAEARCMVENAQKKFAEAEAKLHAAESLQAEANRYhrsaerklqevvareddlsrriasfkadceekeREIIrerqslsdrkKILQQEHERLLDAQTLLNEREDHILSKLQELSRKEKELEASRANVEEKfkalneeksnldltLVSLLKREEAVIEREASLQKKEQKLLVSQetlaskesnEIQKIIANHesalrvkqsEFEAELAIKYKLAEDEIEkkrrawelrdldlGQREesllerehdlevqsralvdkekDLVErshlleekenkliafekEADLKKSLLQKEKEEVNIIKsdlqkslssldekKKQVNCAKDKLEamkseagelsvleiklkeeldVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRkeaervavervvvskslkderdslrqerdamrdqhkrdvdslNREREEFMNKMVHEHSEWFTKIQQERADFLLGIEMQKRDLENCIEKRREELESSFREREKAFEEEKMRefqqisslkekaeKELEQVTleikrldlermeinmdrqrrdrEWAELNNSIEELMVQRQKLEEQRQLLHADREEIQAESERLKKLEDLKIAVDYMAVSEMQRSRLEHSQKKISAKRHLNQQTSLAHADLGSDQKFDVTNNGDRfntpsvqktasasppslaRFSWIKRFADLVFKHSGEnsvendeeksptsdhedasltinsrkrqpvrysfgepkvilevpseneVVKRTVDLesennqnaaqkckqsvsedgihaarkrrvdvdcvdpsellmqnnkrrkqqedfprnSSEEAINHGAVAEQSNLPEDQHTLTSKNKSNVPEGLHTLTsnnhtqggneEASILIVDKIIKISEVTCEMTDADNFINQEKIDGSQNSVAESVQDIVKVGgtndhstpahtddvVLPYISEIDGMVQEKQMGNVKDLTECE
Low Complexity Region (SEG)
MASPSSGRLAITPSSRVLQSPLSDESIWKRLKEAGLDEVSIKRRDKAALIAYIAKLETEIFEHQHHMGLLILEKKELASKYEQIKASAEAAELLQKHDRASHLSAIAEARKREESLKKTLGVEKECIASLEKAVHEIRAESAETKVAADSKFAEARCMVENAQKKFAEAEAKLHAAESLQAEANRYHRSAERKLQEVVAREDDLSRRIASFKADCeekereiirerQSLSDRKKILQQEHERLLDAQTLLNEREDHILSKLQELSRKEKELEASRANVEEKFKALNEEKSNLDLTLVSLLKREEAVIEREASLQKKEQKLLVSQETLASKESNEIQKIIANHESALRVKQSEFEAELAIKYKLAEDEIEKKRRAWELRDLDLGQREESLLEREHDLEVQSRALVDKEKDLVERSHLLEEKENKLIAFEKEADlkksllqkekeeVNIIksdlqkslssldekkkqVNCAKDKLEAMKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDekreelrkeaervavervvvskslKDERDSLRQERDAMRDQHKRDVDSLNREREEFMNKMVHEHSEWFTKIQQERADFLLGIEMQKRDLENCIekrreelessfrerekafeeekmrefQQISSlkekaekeleQVTLEIKRLDLERMEINMDRQRRDREWAELNNSIEELMVqrqkleeqrqllHADREEIQAESERLKKLEDLKIAVDYMAVSEMQRSRLEHSQKKISAKRHLNQQTSLAHADLGSDQKFDVTNNGDRFNTPSVQKTASASPPSLARFSWIKRFADLVFKHSGENSVENDEEKSPTSDHEDASLTINSRKRQPVRYSFGEPKVILEVPSENEVVKRTVDLESENNQNAAQKCKQSVSEDGIHAARKRRVDVDCVDPSELLMQNNKRRKQQEDFPRNSSEEAINHGAVAEQSNLPEDQHTLTSKNKSNVPEGLHTLTSNNHTQGGNEEASILIVDKIIKISEVTCEMTDADNFINQEKIDGSQNSVAESVQDIVKVGGTNDHSTPAHTDDVVLPYISEIDGMVQEKQMGNVKDLTECE
Disordered region (IsUnstruct)
**************************IWKRLKEAGLDEVSIKRRDKAALIAYIAKLETEIFEHQHHMGLLILEKKELA**********************************************ECIASL*******************************************************************************************************************************************************************LTLVSLL****************************************************FEAELAIKYKLAEDEI*****AWEL**********************************************************************************************************SVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWE*****************************************************************EHSEWFTKIQQERADFLLGIEMQK**********************************************************************************************************************LKIAVDYM*****************************************************************ARFSWIKRFADLVFK************************************************************************************************************************************************************************SILIVDKIIKISEVTCEMTDADNFIN*****************IV**************DDVVLPYISEID******************
Disordered Region (DISOPRED)
************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************K******
Disordered Region (DISEMBL)
*********AITPSSRVLQSPLSDESIWKRLKEAGLDEVSIKRRDKAALIAYIAKLETEIFEHQHHMGLLILEKKELASKYEQIKASAEAAELLQKHDRASHLSAIAEARKREESLKKTLGVEKECIASLEKAVHEIRAESAETKVAADSKFAEARCMVENAQKKFAEAEAKLHAAESLQAEANRYHRSAERKLQEVVAREDDLSRRIASFKADCEEKEREIIRERQSLSDRKKILQQEHERLLDAQTLLNEREDHILSKLQELSRKEKELEASRANVEEKFKALNEEKSNLDLTLVSLLKREEAVIEREASLQKKEQKLLVSQETLASKESNEIQKIIANHESALRVKQSEFEAELAIKYKLAEDEIEKKRRAWELRDLDLGQREESLLEREHDLEVQSRALVDKEKDLVERSHLLEEKENKLIAFEKEADLKKSLLQKEKEEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEAMKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVERVVVSKSLK*******************DVDSLNREREEFMNKMVHEHSEWFTKIQQERADFLLGIEMQKRDLENCIEKRREELESSFREREKAFEEEKMREFQQISSLKEKAEKELEQVTLEIKRLDLERMEINMDRQRRDREWAELNNSIEELMVQRQKLEEQRQLLHADREEIQAESERLKKLEDLKIAVDYMAVSEM********************QTSLAHADLGSDQKFDVTNNGDRFNTP***********SLARFSWIKRFADLVFKHSG********************LTINSRKRQPVRYSFGEPKVILEVPSENEVVKRTVDLESE******************HAARKRRVDVDCVDPSELLMQNN*************SEEAINHGAVAEQSNLPEDQHTLTSKNKSNVPEGLHTLTSNNHTQGGNEEASILIVDKIIKISEVTCEMTDADNFINQEKIDGSQNSVAESVQDIVKVGGTNDHSTPAHTDDVVLPYISEIDGMVQEKQMGNVKDLTECE
Disordered Region (DISPRO)
***********************DESIWKRLKEAGLDEVSIKRRDKAALIAYIAKLETEIFEHQHHMGLLILEKKELASKYEQIKASAEAAELLQKHDRASHLSAIAEARKREESLKKTLGVEKECIASLEKAVHEIRAESAETKVAADSKFAEARCMVENAQKKFAEAEAKLHAAESLQAEANRYHRSAERKLQEVVAREDDLSRRIASFKADCEEKEREIIRERQSLSDRKKILQQEHERLLDAQTLLNEREDHILSKLQELSRKEKELEASRANVEEKFKALNEEKSNLDLTLVSLLKREEAVIEREASLQKKEQKLLVSQETLASKESNEIQKIIANHESALRVKQSEFEAELAIKYKLAEDEIEKKRRAWELRDLDLGQREESLLEREHDLEVQSRALVDKEKDLVERSHLLEEKENKLIAFEKEADLKKSLLQKEKEEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEAMKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVERVVVSKSLKDERDSLRQERDAMRDQHKRDVDSLNREREEFMNKMVHEHSEWFTKIQQERADFLLGIEMQKRDLENCIEKRREELESSFREREKAFEEEKMREFQQISSLKEKAEKELEQVTLEIKRLDLERMEINMDRQRRDREWAELNNSIEELMVQRQKLEEQRQLLHADREEIQAESERLKKLEDLKIAVDYMAVSEMQRSRLEHSQKKISAKRHLNQQTSLAHAD*******************************LARFSWIKRFADLVFKHS******************DASLT*NSRKRQPVRYSFGEPKVILEVPSE********D*****NQNA*******VS****************************************************************************TL****HTQGGNEEASILIVDKIIKISEVTCEMTDADNFINQEKIDGSQNSVAESVQDIVKVG**NDHSTPAHTDDVVLPYISEIDGMVQEKQ***********
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MASPSSGRLAITPSSRVLQSPLSDESIWKRLKEAGLDEVSIKRRDKAALIAYIAKLETEIFEHQHHMGLLILExxxxxxxxxxxxxxxxxxxxxQKHDRASHLSAIAEARKREESLKKTLGVEKECIASLEKAVHEIRAESAETKVAADSKxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxQTLLNEREDHILSKxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxLVSLLKREEAVIEREASLQKKEQKLLVSQETLASKESNEIQKIIANHESALRVKQSEFxxxxxxxxxxxxxxxxxxxxxWELRDLDLGQREESLLEREHDLEVQSRALVDKEKDLVERSHLxxxxxxxxxxxxxxxxxxxxxLQKEKEEVNIIKSDLQKSxxxxxxxxxxxxxxxxxxxxxxxxAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLExxxxxxxxxxxxxxxxxxxxxAERVAVERVVVxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxMVHEHSEWFTKIQQERADFLLGIEMQKRDLENCIEKRREELESSFREREKAFxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxKIAVDYMAVSEMQRSRLEHSQKKISAKRHLNQQTSLAHADLGSDQKFDVTNNGDRFNTPSVQKTASASPPSLARFSWIKRFADLVFKHSGENSVENDEEKSPTSDHEDASLTINSRKRQPVRYSFGEPKVILEVPSENEVVKRTVDLESENNQNAAQKCKQSVSEDGIHAARKRRVDVDCVDPSELLMQNNKRRKQQEDFPRNSSEEAINHGAVAEQSNLPEDQHTLTSKNKSNVPEGLHTLTSNNHTQGGNEEASILIVDKIIKISEVTCEMTDADNFINQEKIDGSQNSVAESVQDIVKVGGTNDHSTPAHTDDVVLPYISEIDGMVQEKQMGNVKDLTECE
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	1075	2.2.26 [Sep-21-2011]
Q9FLH0	1042	Putative nuclear matrix c	yes	no	0.876	0.904	0.511	0.0

>sp|Q9FLH0|NMCP_ARATH Putative nuclear matrix constituent protein 1-like protein OS=Arabidopsis thaliana GN=At5g65770 PE=2 SV=1

 Score =  916 bits (2368), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 535/1045 (51%), Positives = 730/1045 (69%), Gaps = 103/1045 (9%)

Query: 2    ASPSSGRLAITPSSRVLQSPLSDESIWKRLKEAGLDEVSIKRRDKAALIAYIAKLETEIF 61
            ++ ++ RL ITP+SRVL+SPL++E +WKRLK+AG DE SIK RDKAALIAYIAKLE+E++
Sbjct: 15   STAATNRLTITPNSRVLKSPLTEEIMWKRLKDAGFDEQSIKNRDKAALIAYIAKLESEVY 74

Query: 62   EHQHHMGLLILEKKELASKYEQIKASAEAAELLQKHDRASHLSAIAEARKREESLKKTLG 121
            ++QH+MGLL+LEK EL+S+YE+IKAS + ++L    ++++++SA+AEA+KREESLKK +G
Sbjct: 75   DYQHNMGLLLLEKNELSSQYEEIKASVDESDLTHMREKSAYVSALAEAKKREESLKKDVG 134

Query: 122  VEKECIASLEKAVHEIRAESAETKVAADSKFAEARCMVENAQKKFAEAEAKLHAAESLQA 181
            + KECI+SLEK +HE+RAE AETKV+A S  +EA  M+E+A KK A+AEAK+ AAE+LQA
Sbjct: 135  IAKECISSLEKTLHEMRAECAETKVSAGSTMSEAHVMIEDALKKLADAEAKMRAAEALQA 194

Query: 182  EANRYHRSAERKLQEVVAREDDLSRRIASFKADCEEKEREIIRERQSLSDRKKILQQEHE 241
            EANRYHR AERKL+EV +REDDL+RR+ASFK++CE KE E++ ERQ+L++R+K LQQEHE
Sbjct: 195  EANRYHRIAERKLKEVESREDDLTRRLASFKSECETKENEMVIERQTLNERRKSLQQEHE 254

Query: 242  RLLDAQTLLNEREDHILSKLQELSRKEKELEASRANVEEKFKALNEEKSNLDLTLVSLLK 301
            RLLDAQ  LN+REDHI ++ QEL+  EK L+ ++   EE+ KA  ++KSNL++ L    K
Sbjct: 255  RLLDAQVSLNQREDHIFARSQELAELEKGLDTAKTTFEEERKAFEDKKSNLEIALALCAK 314

Query: 302  REE---------------------------AVIEREASLQKKEQKLLVSQETLASKESNE 334
            REE                           AV ERE+SL KKEQ+LLV++E +ASKES  
Sbjct: 315  REEVCFYSHNSLLFLVLHYRSSKKFLGDKIAVSERESSLLKKEQELLVAEEKIASKESEL 374

Query: 335  IQKIIANHESALRVKQSEFEAELAIKYKLAEDEIEKKRRAWELRDLDLGQREESLLEREH 394
            IQ ++AN E  LR ++S+ EAEL  K K  E EIE KRRAWELR++D+ QRE+ + E+EH
Sbjct: 375  IQNVLANQEVILRKRKSDVEAELECKSKSVEVEIESKRRAWELREVDIKQREDLVGEKEH 434

Query: 395  DLEVQSRALVDKEKDLVERSHLLEEKENKLIAFEKEADLKKSLLQKEKEEVNIIKSDLQK 454
            DLEVQSRAL +KEKD+ E+S  L+EKE  L+A E++ + K ++L+ EKE +  +  +LQ+
Sbjct: 435  DLEVQSRALAEKEKDITEKSFNLDEKEKNLVATEEDINRKTTMLEDEKERLRKLDLELQQ 494

Query: 455  SLSSLDEKKKQVNCAKDKLEAMKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLE 514
            SL+SL++K+K+V+ A  KLEA+KSE  ELS LE+KLKEELD +RAQKLE++ E D+L++E
Sbjct: 495  SLTSLEDKRKRVDSATQKLEALKSETSELSTLEMKLKEELDDLRAQKLEMLAEADRLKVE 554

Query: 515  KAKFEAEWEMIDEKREELRKEAERVAVERVVVSKSLKDERDSLRQERDAMRDQHKRDVDS 574
            KAKFEAEWE ID KREELRKEAE +  +R   S  LKDERD++++ERDA+R+QHK DV+S
Sbjct: 555  KAKFEAEWEHIDVKREELRKEAEYITRQREAFSMYLKDERDNIKEERDALRNQHKNDVES 614

Query: 575  LNREREEFMNKMVHEHSEWFTKIQQERADFLLGIEMQKRDLENCIEKRREELESSFRERE 634
            LNREREEFMNKMV EHSEW +KIQ+ERADFLLGIEMQKR+LE CIE +REELE+S R+RE
Sbjct: 615  LNREREEFMNKMVEEHSEWLSKIQRERADFLLGIEMQKRELEYCIENKREELENSSRDRE 674

Query: 635  KAFEEEKMREFQQISSLKEKAEKELEQVTLEIKRLDLERMEINMDRQRRDREWAELNNSI 694
            KAFE+EK  E ++I SLKE AEKELE V +E+KRLD ER+EI +DR+RR+REWAEL +S+
Sbjct: 675  KAFEQEKKLEEERIQSLKEMAEKELEHVQVELKRLDAERLEIKLDRERREREWAELKDSV 734

Query: 695  EELMVQRQKLEEQRQLLHADREEIQAESERLKKLEDLKIAVDYMAVSEMQRSRLEHSQKK 754
            EEL VQR+KLE QR +L A+R+EI+ E E LKKLE+LK+A+D M++++MQ S LE S +K
Sbjct: 735  EELKVQREKLETQRHMLRAERDEIRHEIEELKKLENLKVALDDMSMAKMQLSNLERSWEK 794

Query: 755  ISAKRHLNQQTSLAHADLGSDQKFD-------VTNNGDRFNTPSVQKTASASPPSLARFS 807
            +SA   L Q+       +  D + D       V+N+ D +N+ S+++    +P S   FS
Sbjct: 795  VSA---LKQKV------VSRDDELDLQNGVSTVSNSEDGYNS-SMERQNGLTPSSATPFS 844

Query: 808  WIKRFADLVFKHSGENSVENDEEKSPTSDHEDASLTINSRKRQPVRYSFGEPKVILEVPS 867
            WIKR  +L+FK S E S                           + + + E      VPS
Sbjct: 845  WIKRCTNLIFKTSPEKST--------------------------LMHHYEEEGG---VPS 875

Query: 868  ENEVVKRTVDLESENNQNAAQKCKQSVSEDGIHAARKRRVDVDCVDPSELLMQNNKRRKQ 927
            E       + LES   +  A     S++ + + A RKRR +    + SE    NNK+RK 
Sbjct: 876  EK------LKLESSRREEKAYTEGLSIAVERLEAGRKRRGNTSGDETSE--PSNNKKRKH 927

Query: 928  QEDFPRNSSEEAINHGAVAEQSNLPEDQHTLTSKNKSNVPEGLHTLTSNNHTQGGNEEAS 987
              D  +  S+EA     ++   N+PED+H L S +++  P G+                 
Sbjct: 928  --DVTQKYSDEADTQSVISSPQNVPEDKHELPS-SQTQTPSGM----------------- 967

Query: 988  ILIVDKIIKISEVTCEMTDADNFIN 1012
             +++ + +KI+ VTCE T+  N + 
Sbjct: 968  -VVISETVKITRVTCE-TEVTNKVT 990


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.309    0.125    0.324 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 358,007,472
Number of Sequences: 539616
Number of extensions: 15283736
Number of successful extensions: 142889
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 1012
Number of HSP's successfully gapped in prelim test: 5448
Number of HSP's that attempted gapping in prelim test: 81313
Number of HSP's gapped (non-prelim): 28570
length of query: 1075
length of database: 191,569,459
effective HSP length: 128
effective length of query: 947
effective length of database: 122,498,611
effective search space: 116006184617
effective search space used: 116006184617
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 67 (30.4 bits)

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	1075
359497042	1117	PREDICTED: putative nuclear matrix const	0.937	0.902	0.597	0.0
255579507	1052	Filamin-A-interacting protein, putative	0.937	0.958	0.580	0.0
449451333	1025	PREDICTED: putative nuclear matrix const	0.897	0.941	0.555	0.0
356511984	1048	PREDICTED: putative nuclear matrix const	0.951	0.976	0.535	0.0
356563480	1050	PREDICTED: putative nuclear matrix const	0.953	0.976	0.524	0.0
240256486	1010	branched-chain-amino-acid aminotransfera	0.876	0.932	0.525	0.0
238481650	1042	protein little nuclei4 [Arabidopsis thal	0.876	0.904	0.511	0.0
334188655	1018	branched-chain-amino-acid aminotransfera	0.868	0.917	0.520	0.0
7486519	1421	hypothetical protein F6H11.110 - Arabido	0.866	0.655	0.514	0.0
284807022	925	nuclear matrix constituent protein 2 [Ap	0.753	0.875	0.547	0.0

>gi|359497042|ref|XP_003635406.1| PREDICTED: putative nuclear matrix constituent protein 1-like protein-like [Vitis vinifera] gi|296085718|emb|CBI29518.3| unnamed protein product [Vitis vinifera]

 Score = 1142 bits (2954), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 636/1065 (59%), Positives = 794/1065 (74%), Gaps = 57/1065 (5%)

Query: 1    MASPSSGRLAI--TPSSRVLQSPLSDESIWKRLKEAGLDEVSIKRRDKAALIAYIAKLET 58
            MASP   R +I  TP SRVLQSPLSD++IWKRL++AG DE SIKRRDKAALIAYIAKLE 
Sbjct: 1    MASPQPARFSIAATPGSRVLQSPLSDDAIWKRLRDAGFDEESIKRRDKAALIAYIAKLEA 60

Query: 59   EIFEHQHHMGLLILEKKELASKYEQIKASAEAAELLQKHDRASHLSAIAEARKREESLKK 118
            EIF+HQHHMGLLILE+KE A+KYEQIK  AE+AE++ K D+++H SA+AEARKRE+SLKK
Sbjct: 61   EIFDHQHHMGLLILERKEWATKYEQIKTEAESAEIVYKRDQSAHSSALAEARKREDSLKK 120

Query: 119  TLGVEKECIASLEKAVHEIRAESAETKVAADSKFAEARCMVENAQKKFAEAEAKLHAAES 178
             L +EKECIA+LEKA+HE+R E AETKVAA+ K AEA  MVE+AQK+F EAEAKLHAAE+
Sbjct: 121  ALEIEKECIANLEKALHEMRQECAETKVAAEIKLAEAHSMVEDAQKRFVEAEAKLHAAEA 180

Query: 179  LQAEANRYHRSAERKLQEVVAREDDLSRRIASFKADCEEKEREIIRERQSLSDRKKILQQ 238
             QAEA  + R+AERKLQEV AREDDL RR+ SFK+DC+EKE+EII ERQSLS+R+K +QQ
Sbjct: 181  FQAEAICFRRTAERKLQEVEAREDDLRRRLISFKSDCDEKEKEIILERQSLSERQKNVQQ 240

Query: 239  EHERLLDAQTLLNEREDHILSKLQELSRKEKELEASRANVEEKFKALNEEKSNLDLTLVS 298
              ERL+D Q LLN+RE++I S+ QEL+R EKELEAS++N+E++ +ALNEEKSNL+L L S
Sbjct: 241  GQERLIDGQALLNQREEYIFSRSQELNRLEKELEASKSNIEKELRALNEEKSNLELKLAS 300

Query: 299  LLKREEAVIEREASLQKKEQKLLVSQETLASKESNEIQKIIANHESALRVKQSEFEAELA 358
            L  REE V++REA L KKE ++L+ QE +ASKES+E+QK++A HE AL+ +++EFEAEL 
Sbjct: 301  LTTREEDVVKREALLNKKEHEILILQEKIASKESDEVQKLMALHEIALKTRKAEFEAELE 360

Query: 359  IKYKLAEDEIEKKRRAWELRDLDLGQREESLLEREHDLEVQSRALVDKEKDLVERSHLLE 418
             K KL EDEIE KRRA ELR++DL  RE+  LEREH+LEVQSRAL +KEKD+ E+ + L+
Sbjct: 361  TKRKLVEDEIEAKRRASELREVDLSNREDFALEREHELEVQSRALAEKEKDVTEKLNSLD 420

Query: 419  EKENKLIAFEKEADLKKSLLQKEKEEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEAMKS 478
            EKE  L A EK+ +L+K  L+KEKEE+N +K +++KSLSSL++KKKQV+ AK+K+EAMKS
Sbjct: 421  EKEKYLNAAEKDVELEKIHLEKEKEEINKMKLNIEKSLSSLEDKKKQVDHAKEKVEAMKS 480

Query: 479  EAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAER 538
            E  EL VLE+KLKEE+DV+RAQKLELM E D+L+ +KA FEAEWE IDEKREELR EAER
Sbjct: 481  ETSELLVLEMKLKEEIDVIRAQKLELMAEADELRAQKANFEAEWESIDEKREELRNEAER 540

Query: 539  VAVERVVVSKSLKDERDSLRQERDAMRDQHKRDVDSLNREREEFMNKMVHEHSEWFTKIQ 598
            +A ER+ +SK LKDERDSL+ E+DAMRDQ+K++V+SL+RERE+FM+KMVHE SEWF+KIQ
Sbjct: 541  IAEERLAISKFLKDERDSLKLEKDAMRDQYKQEVESLSREREDFMSKMVHERSEWFSKIQ 600

Query: 599  QERADFLLGIEMQKRDLENCIEKRREELESSFREREKAFEEEKMREFQQISSLKEKAEKE 658
            QERADFLL IEMQK++LENCI+ RREELES F+EREK FE+EKM+E Q ISS+KE+  KE
Sbjct: 601  QERADFLLDIEMQKKELENCIDNRREELESYFKEREKTFEQEKMKELQHISSMKERVAKE 660

Query: 659  LEQVTLEIKRLDLERMEINMDRQRRDREWAELNNSIEELMVQRQKLEEQRQLLHADREEI 718
            LE V  E+KRLD ERMEIN+D +RRDREWAEL+NSIEEL +QRQKL++QR+LLHADR+EI
Sbjct: 661  LEHVASEMKRLDAERMEINLDHERRDREWAELSNSIEELKMQRQKLKKQRELLHADRKEI 720

Query: 719  QAESERLKKLEDLKIAVDYMAVSEMQRSRLEHSQKKISAKRHLNQQTSLAHADLGSDQKF 778
              + E LKKLEDLKIA D +A++EMQ+S  E SQ+K+  KR+   Q ++ +AD  S QK 
Sbjct: 721  HTQIEHLKKLEDLKIASDNIALAEMQQSNQEPSQRKVYVKRYYKAQNTIPNADFESHQKI 780

Query: 779  DVTNNGDRFNTPSVQKTASASPPSLARFSWIKRFADLVFKHSGENSVENDEEKSPTSDHE 838
            +V  NG  FN P++    S+SP +   FSW KR A+L+FK S E       EKS  S+ E
Sbjct: 781  NVVKNGSGFNLPAL--PDSSSPSTATPFSWFKRCAELIFKLSPEKPSIKHGEKSSISNSE 838

Query: 839  DASLTINSR----------------------KRQPVRYSFGEPKVILEVPSENEVVKRTV 876
            +A+LT+                          RQP RY+ GEPKVILEVPS  E VK   
Sbjct: 839  NANLTLAGNLDLSDGFDREVHDRNEKTHSISDRQPTRYALGEPKVILEVPSSGEDVKGLH 898

Query: 877  DLESENNQNAAQKCKQSVSEDGIHAARKRRV----DVDCVDPSELLMQNNKRRKQQEDFP 932
             LESE  ++ ++    S SE  + A RKRRV      D VD +    Q NK+R+QQE   
Sbjct: 899  TLESEIKKDTSENSSHSFSEKELLAGRKRRVVNSSSNDWVDTTLEQRQKNKKRRQQES-- 956

Query: 933  RNSSEEAINHGAVAEQSNLPEDQHTLTSKNKSNVPEGLHTLTSNNHTQGGNEEASILIVD 992
                  A +   V+ Q               S+  EG     S N TQGG EE ++LI D
Sbjct: 957  ------AADPCGVSIQ---------------SDAREGQDVSISLNQTQGGAEETNLLITD 995

Query: 993  KIIKISEVTCEMTDADNFINQEKIDGSQNSVAESVQDIVKVGGTN 1037
            +IIKISEVTCE      F NQ K +  QNSV E  QDI + GGTN
Sbjct: 996  EIIKISEVTCENV---VFDNQAKPNALQNSVVELGQDI-QHGGTN 1036

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255579507|ref|XP_002530596.1| Filamin-A-interacting protein, putative [Ricinus communis] gi|223529844|gb|EEF31776.1| Filamin-A-interacting protein, putative [Ricinus communis]

 Score = 1105 bits (2858), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 629/1083 (58%), Positives = 787/1083 (72%), Gaps = 75/1083 (6%)

Query: 1    MASP----SSGRLAITPSSRVLQSPLSDESIWKRLKEAGLDEVSIKRRDKAALIAYIAKL 56
            MASP    S   L+ITP +RVL++PLSDE+IWKRLKEAG DE SIKRRDKAALI+YI KL
Sbjct: 1    MASPITPGSVRGLSITPGARVLKTPLSDETIWKRLKEAGFDEESIKRRDKAALISYIVKL 60

Query: 57   ETEIFEHQHHMGLLILEKKELASKYEQIKASAEAAELLQKHDRASHLSAIAEARKREESL 116
            E+EI++ QHHMGLLILE+KELAS  EQIK SAE  EL  K D+A+HLSA+AEARKREESL
Sbjct: 61   ESEIYDLQHHMGLLILERKELASNCEQIKTSAETTELKHKRDQAAHLSALAEARKREESL 120

Query: 117  KKTLGVEKECIASLEKAVHEIRAESAETKVAADSKFAEARCMVENAQKKFAEAEAKLHAA 176
            KK LGVEKECIAS+EKA+HE+RAESAE KVAAD K AEA  MVE+AQKK+ +AEAKLHAA
Sbjct: 121  KKALGVEKECIASIEKALHEMRAESAEIKVAADCKVAEAHSMVEDAQKKYTDAEAKLHAA 180

Query: 177  ESLQAEANRYHRSAERKLQEVVAREDDLSRRIASFKADCEEKEREIIRERQSLSDRKKIL 236
            E+LQAEA +Y R+AERKLQE  AREDDLSRRI++F+ADC+ KE+EI  ERQ+LS+R+K+L
Sbjct: 181  EALQAEATQYRRAAERKLQEAQAREDDLSRRISTFRADCDAKEKEIDLERQTLSERRKLL 240

Query: 237  QQEHERLLDAQTLLNEREDHILSKLQELSRKEKELEASRANVEEKFKALNEEKSNLDLTL 296
            QQEHER+LD Q LLN+RED+I SK QEL   EKELEAS+ +V+E+ +ALN+EKS L +T+
Sbjct: 241  QQEHERVLDGQALLNQREDYIASKSQELDCLEKELEASKGSVQEELRALNDEKSKLGVTV 300

Query: 297  VSLLKREEAVIEREASLQKKEQKLLVSQETLASKESNEIQKIIANHESALRVKQSEFEAE 356
             SL +RE+AV+EREA L K+EQ LL+ QE LASKES EIQK+IANHE+ LR ++ EFEAE
Sbjct: 301  ASLSQREQAVVEREALLNKREQDLLIMQEKLASKESVEIQKVIANHETLLRTRKLEFEAE 360

Query: 357  LAIKYKLAEDEIEKKRRAWELRDLDLGQREESLLEREHDLEVQSRALVDKEKDLVERSHL 416
            L +  KLAEDEIE KRRAWELR++DL QREE L E+EHDLEV+SR L D EKD+ E+ + 
Sbjct: 361  LEMNRKLAEDEIEAKRRAWELREVDLSQREELLNEKEHDLEVKSRVLADLEKDVTEKVNF 420

Query: 417  LEEKENKLIAFEKEADLKKSLLQKEKEEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEAM 476
            L+EKE  L A EKE +L+++LL ++K E+N +K D++KSL+SL+ +KKQV+CAK+KLE M
Sbjct: 421  LDEKERCLNAAEKENELRRALLDQQKNEINKMKLDIEKSLNSLENEKKQVDCAKEKLETM 480

Query: 477  KSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEA 536
            K+E  EL+VLE KLKEE+D++RAQK+ELM E D+L++EKAKFEAEWE+IDEKREEL+ EA
Sbjct: 481  KNETNELAVLETKLKEEVDMLRAQKVELMAEEDRLKVEKAKFEAEWELIDEKREELQIEA 540

Query: 537  ERVAVERVVVSKSLKDERDSLRQERDAMRDQHKRDVDSLNREREEFMNKMVHEHSEWFTK 596
            ERVA ER  V + LKD RDSLR E++ +R+QHK DV+ LN EREEFMNKMV E SEWF K
Sbjct: 541  ERVAEERQSVCRLLKDGRDSLRVEKETIREQHKHDVELLNHEREEFMNKMVQERSEWFNK 600

Query: 597  IQQERADFLLGIEMQKRDLENCIEKRREELESSFREREKAFEEEKMREFQQISSLKEKAE 656
            IQ+E ADFLLGIEMQKR+LEN IEKRREE+E   R++EKAFE EK  E + ISSL+EKA 
Sbjct: 601  IQKEHADFLLGIEMQKRELENSIEKRREEIECYLRDQEKAFELEKKNELEHISSLREKAA 660

Query: 657  KELEQVTLEIKRLDLERMEINMDRQRRDREWAELNNSIEELMVQRQKLEEQRQLLHADRE 716
            KELEQ  LE+K+LD ERMEIN+DR RRD EWA LN SIEEL  Q QKLE+QR+LLHA+RE
Sbjct: 661  KELEQAALEMKKLDSERMEINLDRDRRDIEWAVLNKSIEELKGQTQKLEKQRELLHAERE 720

Query: 717  EIQAESERLKKLEDLKIAVDYMAVSEMQRSRLEHSQKKISAKRHLNQQTSLAHADLGSDQ 776
            E+ A+ E LKKLEDLK+ +D M +++MQ+S +E SQKKISA R L Q++++ +AD  S +
Sbjct: 721  EVCAQIEHLKKLEDLKLMLDNMELAKMQQSNMESSQKKISAIRDLRQESTVKNADKISYK 780

Query: 777  KFDVTNNGDRFNTPSVQKTASASPPSLARFSWIKRFADLVFKHSGENSVENDEEKSPTSD 836
            + +  N+GD  ++PS+QK   +  P  ARFSWIKR  +L+FK S E  +   EE+S  S+
Sbjct: 781  RVENGNSGDVLDSPSMQKLDVSPSPGSARFSWIKRCTELIFKGSPEKPLLKSEEESLISN 840

Query: 837  HEDASLTINSRKRQPVRYSFGEPKVILEVPSENEVVKRTVDLESENNQNAAQKCKQSVSE 896
            HE+ASL            S G+                   L+S N            SE
Sbjct: 841  HENASLI-----------SAGK-------------------LDSSN----------GFSE 860

Query: 897  DGIHAARKRRVDV----DCVDPSELLMQNNKRRKQQEDFPRNSSEEAINHGAVAEQSNLP 952
              +   RKRRV         DP     QNNKRRKQQED     S +A NH   + Q N P
Sbjct: 861  QVLKPGRKRRVKNSRLDGSADPWPEQRQNNKRRKQQEDAAVILSPDANNHSVTSNQENAP 920

Query: 953  EDQHTLTSKNKSNVPEGLHTLTSNNHTQGGNEEASILIVDKIIKISEVTCEMTDADNFIN 1012
            + QH LT ++            S NH Q         + ++IIKISEVTCE+   DNF N
Sbjct: 921  KTQH-LTEED------------SENHVQ---------VAERIIKISEVTCEIAHIDNFPN 958

Query: 1013 QEKIDGSQNSVAESVQD--IVKVGGTNDHSTPAHTDDVVLPYISEIDGMVQEKQMGNVKD 1070
            QEK++  Q  + E+  D   V+ GGTN H+   + D  + P   E   M+++ Q+GN   
Sbjct: 959  QEKVE--QQLIPEATCDHSAVQDGGTNGHANQGYVDHSLQPCGLEAPEMLKD-QLGNDGR 1015

Query: 1071 LTE 1073
            +TE
Sbjct: 1016 VTE 1018

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449451333|ref|XP_004143416.1| PREDICTED: putative nuclear matrix constituent protein 1-like protein-like [Cucumis sativus]

 Score = 1019 bits (2635), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 578/1040 (55%), Positives = 749/1040 (72%), Gaps = 75/1040 (7%)

Query: 1    MASP-------SSGR-LAITPSSRVLQSPLSDESIWKRLKEAGLDEVSIKRRDKAALIAY 52
            MASP       SSG+ L++TP SRVLQ+PL+DE+IW+RLKEAG DE SIKRRDKAALIAY
Sbjct: 1    MASPQSAGLTLSSGKGLSLTPGSRVLQTPLADEAIWRRLKEAGFDEESIKRRDKAALIAY 60

Query: 53   IAKLETEIFEHQHHMGLLILEKKELASKYEQIKASAEAAELLQKHDRASHLSAIAEARKR 112
            IAKLE E+F+HQHHMGLLILE+KELAS YEQ+K+ AE AEL+ + D+A+HLSA+ EA+KR
Sbjct: 61   IAKLEAEMFDHQHHMGLLILERKELASDYEQMKSKAETAELMYRRDQAAHLSALTEAKKR 120

Query: 113  EESLKKTLGVEKECIASLEKAVHEIRAESAETKVAADSKFAEARCMVENAQKKFAEAEAK 172
            E++LKK +G+++EC+ASLEKA+HE+R ESAE KVAA+S+ AEAR M+E+AQKKF EAEAK
Sbjct: 121  EDNLKKAIGIKEECVASLEKALHEMRLESAEIKVAAESRLAEARIMMEDAQKKFVEAEAK 180

Query: 173  LHAAESLQAEANRYHRSAERKLQEVVAREDDLSRRIASFKADCEEKEREIIRERQSLSDR 232
            LHAAESLQAE+NR +R+AERKL EV AREDDL RR+A FK+DC++K  EI+ ERQSLS+R
Sbjct: 181  LHAAESLQAESNRCNRAAERKLHEVEAREDDLRRRMACFKSDCDKKGEEIVLERQSLSER 240

Query: 233  KKILQQEHERLLDAQTLLNEREDHILSKLQELSRKEKELEASRANVEEKFKALNEEKSNL 292
            +K LQQEHERLLD Q LLN+RE++ILSK QELSR EKELE  RA++E + +A+++EKS +
Sbjct: 241  QKALQQEHERLLDGQALLNQREEYILSKTQELSRSEKELEELRASIENERRAVHDEKSKM 300

Query: 293  DLTLVSLLKREEAVIEREASLQKKEQKLLVSQETLASKESNEIQKIIANHESALRVKQSE 352
             L   SL KREEAV   E  + +++Q+LLV +E +A+KE+NEIQK++ANHES LR K S+
Sbjct: 301  QLYEASLSKREEAVNRMEIMMNRRQQELLVLEEKIATKETNEIQKVVANHESTLRTKISD 360

Query: 353  FEAELAIKYKLAEDEIEKKRRAWELRDLDLGQREESLLEREHDLEVQSRALVDKEKDLVE 412
            F+AEL IK K  EDEIE KRRAWELR++DL QR+E +LE+E+DLEVQSR+LV KEK++ E
Sbjct: 361  FDAELQIKQKAVEDEIESKRRAWELREMDLKQRDEQILEKEYDLEVQSRSLVAKEKEVEE 420

Query: 413  RSHLLEEKENKLIAFEKEADLKKSLLQKEKEEVNIIKSDLQKSLSSLDEKKKQVNCAKDK 472
             S  L+EKE  L A E+E +L K LLQKEK+E + +K DLQ SL SL++++KQV+CAKDK
Sbjct: 421  LSKSLDEKEKNLKALEQELELSKVLLQKEKDECSKMKRDLQCSLDSLEDRRKQVDCAKDK 480

Query: 473  LEAMKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREEL 532
            LEA +SE  ELS+LE+KLKEELD VR QKLELM E DKL +EKAKFEAEWEMIDEKREEL
Sbjct: 481  LEAFRSETNELSLLEMKLKEELDSVRVQKLELMDEADKLMVEKAKFEAEWEMIDEKREEL 540

Query: 533  RKEAERVAVERVVVSKSLKDERDSLRQERDAMRDQHKRDVDSLNREREEFMNKMVHEHSE 592
            R EAE +A ER+ VSK +KDERD LR ER+ MR Q K D ++L+REREEF+NKM  E SE
Sbjct: 541  RTEAEILAAERLAVSKFIKDERDGLRLEREVMRKQFKNDRETLSREREEFLNKMTCERSE 600

Query: 593  WFTKIQQERADFLLGIEMQKRDLENCIEKRREELESSFREREKAFEEEKMREFQQISSLK 652
            W  K+QQER D L+ +E QK++LENC+E+RREELE   RE+ K FE+EK  E  +I+ LK
Sbjct: 601  WLNKMQQERKDLLMDVEAQKKELENCLEQRREELEGQLREKLKNFEQEKKNELDKINFLK 660

Query: 653  EKAEKELEQVTLEIKRLDLERMEINMDRQRRDREWAELNNSIEELMVQRQKLEEQRQLLH 712
            +KA K+LE+V LE K+L+ ERMEIN+DR+RR+REWAELNNSIEEL VQR+KLE+QR+LLH
Sbjct: 661  DKATKDLEEVALETKKLETERMEINLDRERRNREWAELNNSIEELKVQREKLEKQRELLH 720

Query: 713  ADREEIQAESERLKKLEDLKIAVDYMAVSEMQRSRLEHSQKKISAKRHLNQQTSLAHADL 772
            ADREEI A+ ERLKK E+LK+A+D MAV+EM +S L+ +Q  IS  R         H   
Sbjct: 721  ADREEILADIERLKKFENLKVALDNMAVAEMNQSDLDVAQ-PISYPRRRPLVRDAEH--- 776

Query: 773  GSDQKFDVTNNGDRFNTPSVQKTASASPPSLARFSWIKRFADLVFKHSGENSVENDEEKS 832
                + D     + F++PSV K     PP+  RFSWIKR ++L+FK S E       E++
Sbjct: 777  ----QIDTQKITNGFDSPSVLKVDGDLPPTSTRFSWIKRCSELIFKQSPER------ERA 826

Query: 833  PTS-------DHEDASLTINSR---------------------KRQPVRYSFGEPKVILE 864
            PT        +  D S +I+ +                     +RQ V+Y+ GEPKVI+E
Sbjct: 827  PTRYPVKNPINQADQSSSISGQLFQSPEFEMDRGNEKSQRTITERQDVKYAIGEPKVIVE 886

Query: 865  VPSENEVVKRTVDLESENNQNAAQKCKQSVSEDGIHAARKRRVDVDCVDP---SELLMQN 921
            VP  N+ +     LESE   +       ++S+  +   +KRR   +   P    +L  +N
Sbjct: 887  VPPANKNMNGVPVLESEIVDDV------TLSDHRVLTGKKRRA-TNITHPDSLGQLEFEN 939

Query: 922  NKRRKQQEDFPRNSSEEAINHGAVAEQSNLPEDQHTLTSKNKSNVPEGLHTLTSNNHTQG 981
            N ++++QE+   + +E+  +    A Q N+PED            P+   + T N   Q 
Sbjct: 940  NNKKQRQEEISGDPTEDDSSCPEEATQMNMPED------------PKAFVSSTDN---QE 984

Query: 982  GNEEASILIVDKIIKISEVT 1001
              +EA ++IV   I I EVT
Sbjct: 985  NAKEAEVVIVSTDINIIEVT 1004

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356511984|ref|XP_003524701.1| PREDICTED: putative nuclear matrix constituent protein 1-like protein-like [Glycine max]

 Score = 1008 bits (2605), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 586/1094 (53%), Positives = 777/1094 (71%), Gaps = 71/1094 (6%)

Query: 1    MASP--SSGRLAITPSSRVLQSPLSDESIWKRLKEAGLDEVSIKRRDKAALIAYIAKLET 58
            +++P  SS  L+ITP SRVL+SPLSDE IWKRL++AG DE SIK +DKAALIAYIAKLE 
Sbjct: 3    LSTPNSSSKHLSITPGSRVLRSPLSDEQIWKRLRDAGFDEESIKHKDKAALIAYIAKLEA 62

Query: 59   EIFEHQHHMGLLILEKKELASKYEQIKASAEAAELLQKHDRASHLSAIAEARKREESLKK 118
            EI++HQHHMGLLILEKK+LASKYEQ+KA AE++EL+ KHD A + SA+ E+RKREESLKK
Sbjct: 63   EIYDHQHHMGLLILEKKDLASKYEQVKALAESSELMHKHDSAMNKSALTESRKREESLKK 122

Query: 119  TLGVEKECIASLEKAVHEIRAESAETKVAADSKFAEARCMVENAQKKFAEAEAKLHAAES 178
            T+ V+  CIASLEKA+HE+R ESAETKVAA+SKFAEA  +++ AQ+KF EAEAK+ AAES
Sbjct: 123  TVSVKDACIASLEKALHELRTESAETKVAAESKFAEAHQLIDEAQRKFTEAEAKVRAAES 182

Query: 179  LQAEANRYHRSAERKLQEVVAREDDLSRRIASFKADCEEKEREIIRERQSLSDRKKILQQ 238
            LQAEANRYH  AERKL++V ARE++L R+I SFK+DC+EK++ +I ERQSLS+R+K LQQ
Sbjct: 183  LQAEANRYHNVAERKLRDVEARENNLRRQIISFKSDCDEKDKAMILERQSLSERQKGLQQ 242

Query: 239  EHERLLDAQTLLNEREDHILSKLQELSRKEKELEASRANVEEKFKALNEEKSNLDLTLVS 298
            E ERLL +Q+LLN+RE+H LS+ QEL+R ++ELE ++  +E++ +AL++EK+ L L   +
Sbjct: 243  EQERLLQSQSLLNQREEHFLSRSQELNRLQRELEDTKGKIEKEHEALHDEKTTLKLKEAT 302

Query: 299  LLKREEAVIEREASLQKKEQKLLVSQETLASKESNEIQKIIANHESALRVKQSEFEAELA 358
            L++REE + + ++ L KKEQ+LL  Q  L+++ES+E QK++A  E+ALR K+   E EL 
Sbjct: 303  LIQREEELTKWKSELSKKEQELLEFQAKLSNRESDETQKVVAGQEAALRTKKYNLEVELQ 362

Query: 359  IKYKLAEDEIEKKRRAWELRDLDLGQREESLLEREHDLEVQSRALVDKEKDLVERSHLLE 418
            +  KL E+EIE+KRRAWEL+++DL   E+ +L+R+H+LEV SR+L +KEKDL + S  LE
Sbjct: 363  MLRKLVENEIEEKRRAWELKEVDLKHCEDQILQRQHELEVLSRSLSEKEKDLKDLSSALE 422

Query: 419  EKENKLIAFEKEADLKKSLLQKEKEEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEAMKS 478
            EK+  L A EK+ +L K LLQKEK++V     DLQKSL+SL++K +QV+  K+KLEAMKS
Sbjct: 423  EKDQMLSASEKKFELNKVLLQKEKDDVEQANQDLQKSLASLEDKIRQVDIDKEKLEAMKS 482

Query: 479  EAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAER 538
            E G++S+LE+KLKEE+D+VR+QKLEL+ E DKL+ EKAKFEA+WE++DEK+EELRKEAE 
Sbjct: 483  ETGDMSILEVKLKEEIDLVRSQKLELLAEADKLKTEKAKFEADWELLDEKKEELRKEAEF 542

Query: 539  VAVERVVVSKSLKDERDSLRQERDAMRDQHKRDVDSLNREREEFMNKMVHEHSEWFTKIQ 598
            +A ER  VS  +K+ERD LR+E++ +R+Q+ +D+  L  ERE+FMNKM HEH+EWF K+Q
Sbjct: 543  IAKEREAVSTFIKNERDQLREEKENLRNQYNQDLGYLASEREKFMNKMAHEHAEWFGKMQ 602

Query: 599  QERADFLLGIEMQKRDLENCIEKRREELESSFREREKAFEEEKMREFQQISSLKEKAEKE 658
            QERADFL  IE+QK++L N IEKRREE+ESS +EREKAFEEEK  E Q I++LKEKA KE
Sbjct: 603  QERADFLREIELQKQELNNLIEKRREEVESSLKEREKAFEEEKNTELQYINALKEKATKE 662

Query: 659  LEQVTLEIKRLDLERMEINMDRQRRDREWAELNNSIEELMVQRQKLEEQRQLLHADREEI 718
            LEQV+LE+KRL  ER EIN+DR+RR+REWAEL   IEEL VQR KL +QR+LLHADR EI
Sbjct: 663  LEQVSLEMKRLQTERAEINLDRERRNREWAELTKCIEELEVQRDKLRKQRELLHADRIEI 722

Query: 719  QAESERLKKLEDLKIAVDYMAVSEMQRSRLEHSQKKISAKRHLNQQTSLAHADLGSDQKF 778
             A++E LKKLEDLK   D  A++EM +S +E +QKKISA+++L  Q SL        Q  
Sbjct: 723  YAQTEELKKLEDLKAVSDDNAITEMLKSDMESNQKKISARKNLKHQ-SLT-------QGG 774

Query: 779  DVTNNGDRFNTPSVQKTASASPPSLARFSWIKRFADLVFKHSGENSVENDEEKSPTSD-- 836
            D  NNG  F+TP VQK+   SPPS  RFSWIKR  +L+F++S E  +E +E+    SD  
Sbjct: 775  DKINNG--FDTPLVQKSP-VSPPSPVRFSWIKRCTELIFRNSPEKPLERNEDSLMGSDTG 831

Query: 837  ---------HEDASLTINSRKRQPVRYSFGEPKVILEVPSENEVVKRTVDLESE----NN 883
                       D SL  N  K Q + ++F EPKVI+EVPS ++   R  ++ESE    N 
Sbjct: 832  NVCNGKQYSENDESLG-NIGKGQQIGFAFEEPKVIVEVPSLDDA--RRSEIESEAKDVNG 888

Query: 884  QNAAQKCKQSVSEDGIHAARKRR----VDVDCVDPSELLMQNNKRRKQQEDFPRNSSEEA 939
            ++A       +  DG HA R++R    V     DP   + QN K R              
Sbjct: 889  KSAL------LLPDGHHAGRRKRGRGNVTDKVGDPLVDVGQNKKSR-------------- 928

Query: 940  INHGAVAEQSNLPEDQHTLTSKNKSNVPEGLHTLTSNNHTQGGNEEASILIVDKIIKISE 999
                  AEQSN          K +S V +    LTS+N TQG  EE  +++VDK+I +SE
Sbjct: 929  ------AEQSN---------EKVQSGVSKVQQVLTSSNQTQGNTEETRVVMVDKVIHVSE 973

Query: 1000 VTCEMTDADNFINQEKIDGSQNSVAESVQDIVKVGGTNDHSTPAHTDDVVLPYISEIDGM 1059
            VT E  DA   ++QE  D  Q+    + Q I+  G T D S      + +LP  S + G 
Sbjct: 974  VTSEKLDALPILSQEPRDNMQSPTFGADQCILH-GETIDRSNSKTRQEDILPCASSVLGS 1032

Query: 1060 VQEKQMGNVKDLTE 1073
             +E   GN   ++E
Sbjct: 1033 TEEISKGNNDQVSE 1046

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356563480|ref|XP_003549990.1| PREDICTED: putative nuclear matrix constituent protein 1-like protein-like [Glycine max]

 Score =  976 bits (2523), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 574/1094 (52%), Positives = 773/1094 (70%), Gaps = 69/1094 (6%)

Query: 1    MASP--SSGRLAITPSSRVLQSPLSDESIWKRLKEAGLDEVSIKRRDKAALIAYIAKLET 58
            +++P  SS  L+ITP SRVL++PLSDE IWKRL++AG DE SIK +DKAALIAYIAKLE 
Sbjct: 3    LSTPNSSSKHLSITPGSRVLRNPLSDEQIWKRLRDAGFDEESIKHKDKAALIAYIAKLEA 62

Query: 59   EIFEHQHHMGLLILEKKELASKYEQIKASAEAAELLQKHDRASHLSAIAEARKREESLKK 118
            EI++HQHHMGLLILEKK+LASKYEQ+KA AE++EL+ KHD   + SA+ E++KREESLKK
Sbjct: 63   EIYDHQHHMGLLILEKKDLASKYEQVKALAESSELMHKHDSTMNKSALTESKKREESLKK 122

Query: 119  TLGVEKECIASLEKAVHEIRAESAETKVAADSKFAEARCMVENAQKKFAEAEAKLHAAES 178
            T+ ++  CIASLEKA+HE+R ESAETKVAA+SKF EAR +++ AQKKF EAEAK+ AAES
Sbjct: 123  TVSIKDACIASLEKALHELRTESAETKVAAESKFVEARQLIDEAQKKFTEAEAKVRAAES 182

Query: 179  LQAEANRYHRSAERKLQEVVAREDDLSRRIASFKADCEEKEREIIRERQSLSDRKKILQQ 238
            LQAEA RYH  AERKL +V ARED+L R+I SFK+DC+EK++E+I ERQSLS+R+K LQQ
Sbjct: 183  LQAEAKRYHNVAERKLHDVEAREDNLRRQIISFKSDCDEKDKEMIIERQSLSERQKGLQQ 242

Query: 239  EHERLLDAQTLLNEREDHILSKLQELSRKEKELEASRANVEEKFKALNEEKSNLDLTLVS 298
            E ERLL +Q+LLN+RE+H LS+ QEL+R ++ELE ++   E++ +AL +EK+ L L   +
Sbjct: 243  EQERLLQSQSLLNQREEHFLSRSQELNRLQRELEDTKVKFEKEHEALYDEKTTLKLKEAT 302

Query: 299  LLKREEAVIEREASLQKKEQKLLVSQETLASKESNEIQKIIANHESALRVKQSEFEAELA 358
            L+++EE + + ++ L KKEQ+LL  Q  L+++ES++ QK++A+ E+ALR K+   E EL 
Sbjct: 303  LIQQEEELAKWKSELSKKEQELLEFQAKLSNRESDKTQKVVASQEAALRTKKYNLEVELQ 362

Query: 359  IKYKLAEDEIEKKRRAWELRDLDLGQREESLLEREHDLEVQSRALVDKEKDLVERSHLLE 418
            ++ KL E+EIE+KRRAWEL+++DL   E+ +LER+H+LEV SR+L +KEKDL + S  LE
Sbjct: 363  MQRKLVENEIEEKRRAWELKEVDLKHCEDQILERQHELEVLSRSLSEKEKDLKDLSSALE 422

Query: 419  EKENKLIAFEKEADLKKSLLQKEKEEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEAMKS 478
            EK+ +L A EK+ +L K LLQKEK+ V   K D+QKSL SL++K +QV+  K+KLEAMKS
Sbjct: 423  EKDQRLSAAEKDFELNKVLLQKEKDHVEQAKQDVQKSLESLEDKIRQVDMEKEKLEAMKS 482

Query: 479  EAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAER 538
            E G+LS+LE+KLKEE+D+VR+QKLEL+ E +KL+ EKAKFEAEWE++DEK+EELR+EAE 
Sbjct: 483  ETGDLSILEVKLKEEIDLVRSQKLELLAEAEKLKAEKAKFEAEWELLDEKKEELREEAEF 542

Query: 539  VAVERVVVSKSLKDERDSLRQERDAMRDQHKRDVDSLNREREEFMNKMVHEHSEWFTKIQ 598
            +A ER  VS  +++ERD LR+E++ + +Q+ +D+  L  ERE+FMNKM HEH+EWF K+Q
Sbjct: 543  IAKEREAVSTFIRNERDQLREEKENLHNQYNQDLGFLASEREKFMNKMAHEHAEWFGKMQ 602

Query: 599  QERADFLLGIEMQKRDLENCIEKRREELESSFREREKAFEEEKMREFQQISSLKEKAEKE 658
            QERADFL  IE+QK++L N IEKRREE+ES  +EREKAFEEEK  E Q I++LKEKA KE
Sbjct: 603  QERADFLREIELQKQELNNLIEKRREEVESYLKEREKAFEEEKNTELQYINALKEKAAKE 662

Query: 659  LEQVTLEIKRLDLERMEINMDRQRRDREWAELNNSIEELMVQRQKLEEQRQLLHADREEI 718
            LEQV+LE+KRL  ER EIN+DR+RR+REWAEL N IEEL VQR KL++QR+LLHADR EI
Sbjct: 663  LEQVSLEMKRLQTERAEINLDRERRNREWAELTNCIEELEVQRDKLQKQRELLHADRIEI 722

Query: 719  QAESERLKKLEDLKIAVDYMAVSEMQRSRLEHSQKKISAKRHLNQQTSLAHADLGSDQKF 778
             A++E LKKLEDLK   D  A++EM +S +E +QKKISA+++L  Q SL H   G D+  
Sbjct: 723  YAQTEELKKLEDLKAVSDDNAITEMLKSDMESNQKKISARKNLKHQ-SLTH---GGDR-- 776

Query: 779  DVTNNGDRFNTPSVQKTASASPPSLARFSWIKRFADLVFKHSGENSVENDEEKSPTSDHE 838
               +NG  F+TP VQK+ + SPPS  RFSWIKR  +L+F++S E  +E +E+    SD  
Sbjct: 777  --ISNG--FDTPLVQKS-TVSPPSPVRFSWIKRCTELIFRNSPERPLERNEDFLMGSDTG 831

Query: 839  DAS----------LTINSRKRQPVRYSFGEPKVILEVPSENEVVKRTVDLESE----NNQ 884
            + S             N  KRQ + ++  EPKVI+EVPS ++   R  ++ESE    N +
Sbjct: 832  NVSNLKKHLENDEPLGNIGKRQEIGFALEEPKVIVEVPSLDDA--RRSEIESEAKDVNGK 889

Query: 885  NAAQKCKQSVSEDGIHAARKRRVDVDCVD----PSELLMQNNKRRKQQEDFPRNSSEEAI 940
            +A       +  DG  A R +R   +  D    P   + QN K R +             
Sbjct: 890  SAL------LIPDGHRAGRLKRRRGNMTDKVGNPFVDVGQNKKSRAE------------- 930

Query: 941  NHGAVAEQSNLPEDQHTLTSKNKSNVPEGLHTLTSNNHTQGGNEEASILI-VDKIIKISE 999
                  EQ+N          K +S V +    LTS+N TQG  EE  ++I VDK+I +SE
Sbjct: 931  ------EQTN---------EKVQSGVSKVQQVLTSSNQTQGNTEETRVVIMVDKVIHVSE 975

Query: 1000 VTCEMTDADNFINQEKIDGSQNSVAESVQDIVKVGGTNDHSTPAHTDDVVLPYISEIDGM 1059
            VT E  D    ++QE  D   +    + Q  +  G T D S      + VLP  S + G 
Sbjct: 976  VTSEKLDVLPILSQEPRDNFPSPTLGADQCNLH-GETIDQSNYKTRQEDVLPCASSVLGS 1034

Query: 1060 VQEKQMGNVKDLTE 1073
             +E   GN + ++E
Sbjct: 1035 TEEISKGNNEQVSE 1048

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|240256486|ref|NP_201378.5| branched-chain-amino-acid aminotransferase 5 [Arabidopsis thaliana] gi|334188653|ref|NP_001190626.1| branched-chain-amino-acid aminotransferase 5 [Arabidopsis thaliana] gi|332010720|gb|AED98103.1| branched-chain-amino-acid aminotransferase 5 [Arabidopsis thaliana] gi|332010722|gb|AED98105.1| branched-chain-amino-acid aminotransferase 5 [Arabidopsis thaliana]

 Score =  932 bits (2409), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 535/1018 (52%), Positives = 730/1018 (71%), Gaps = 76/1018 (7%)

Query: 2    ASPSSGRLAITPSSRVLQSPLSDESIWKRLKEAGLDEVSIKRRDKAALIAYIAKLETEIF 61
            ++ ++ RL ITP+SRVL+SPL++E +WKRLK+AG DE SIK RDKAALIAYIAKLE+E++
Sbjct: 15   STAATNRLTITPNSRVLKSPLTEEIMWKRLKDAGFDEQSIKNRDKAALIAYIAKLESEVY 74

Query: 62   EHQHHMGLLILEKKELASKYEQIKASAEAAELLQKHDRASHLSAIAEARKREESLKKTLG 121
            ++QH+MGLL+LEK EL+S+YE+IKAS + ++L    ++++++SA+AEA+KREESLKK +G
Sbjct: 75   DYQHNMGLLLLEKNELSSQYEEIKASVDESDLTHMREKSAYVSALAEAKKREESLKKDVG 134

Query: 122  VEKECIASLEKAVHEIRAESAETKVAADSKFAEARCMVENAQKKFAEAEAKLHAAESLQA 181
            + KECI+SLEK +HE+RAE AETKV+A S  +EA  M+E+A KK A+AEAK+ AAE+LQA
Sbjct: 135  IAKECISSLEKTLHEMRAECAETKVSAGSTMSEAHVMIEDALKKLADAEAKMRAAEALQA 194

Query: 182  EANRYHRSAERKLQEVVAREDDLSRRIASFKADCEEKEREIIRERQSLSDRKKILQQEHE 241
            EANRYHR AERKL+EV +REDDL+RR+ASFK++CE KE E++ ERQ+L++R+K LQQEHE
Sbjct: 195  EANRYHRIAERKLKEVESREDDLTRRLASFKSECETKENEMVIERQTLNERRKSLQQEHE 254

Query: 242  RLLDAQTLLNEREDHILSKLQELSRKEKELEASRANVEEKFKALNEEKSNLDLTLVSLLK 301
            RLLDAQ  LN+REDHI ++ QEL+  EK L+ ++   EE+ KA  ++KSNL++ L    K
Sbjct: 255  RLLDAQVSLNQREDHIFARSQELAELEKGLDTAKTTFEEERKAFEDKKSNLEIALALCAK 314

Query: 302  REEAVIEREASLQKKEQKLLVSQETLASKESNEIQKIIANHESALRVKQSEFEAELAIKY 361
            REEAV ERE+SL KKEQ+LLV++E +ASKES  IQ ++AN E  LR ++S+ EAEL  K 
Sbjct: 315  REEAVSERESSLLKKEQELLVAEEKIASKESELIQNVLANQEVILRKRKSDVEAELECKS 374

Query: 362  KLAEDEIEKKRRAWELRDLDLGQREESLLEREHDLEVQSRALVDKEKDLVERSHLLEEKE 421
            K  E EIE KRRAWELR++D+ QRE+ + E+EHDLEVQSRAL +KEKD+ E+S  L+EKE
Sbjct: 375  KSVEVEIESKRRAWELREVDIKQREDLVGEKEHDLEVQSRALAEKEKDITEKSFNLDEKE 434

Query: 422  NKLIAFEKEADLKKSLLQKEKEEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEAMKSEAG 481
              L+A E++ + K ++L+ EKE +  +  +LQ+SL+SL++K+K+V+ A  KLEA+KSE  
Sbjct: 435  KNLVATEEDINRKTTMLEDEKERLRKLDLELQQSLTSLEDKRKRVDSATQKLEALKSETS 494

Query: 482  ELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAV 541
            ELS LE+KLKEELD +RAQKLE++ E D+L++EKAKFEAEWE ID KREELRKEAE +  
Sbjct: 495  ELSTLEMKLKEELDDLRAQKLEMLAEADRLKVEKAKFEAEWEHIDVKREELRKEAEYITR 554

Query: 542  ERVVVSKSLKDERDSLRQERDAMRDQHKRDVDSLNREREEFMNKMVHEHSEWFTKIQQER 601
            +R   S  LKDERD++++ERDA+R+QHK DV+SLNREREEFMNKMV EHSEW +KIQ+ER
Sbjct: 555  QREAFSMYLKDERDNIKEERDALRNQHKNDVESLNREREEFMNKMVEEHSEWLSKIQRER 614

Query: 602  ADFLLGIEMQKRDLENCIEKRREELESSFREREKAFEEEKMREFQQISSLKEKAEKELEQ 661
            ADFLLGIEMQKR+LE CIE +REELE+S R+REKAFE+EK  E ++I SLKE AEKELE 
Sbjct: 615  ADFLLGIEMQKRELEYCIENKREELENSSRDREKAFEQEKKLEEERIQSLKEMAEKELEH 674

Query: 662  VTLEIKRLDLERMEINMDRQRRDREWAELNNSIEELMVQRQKLEEQRQLLHADREEIQAE 721
            V +E+KRLD ER+EI +DR+RR+REWAEL +S+EEL VQR+KLE QR +L A+R+EI+ E
Sbjct: 675  VQVELKRLDAERLEIKLDRERREREWAELKDSVEELKVQREKLETQRHMLRAERDEIRHE 734

Query: 722  SERLKKLEDLKIAVDYMAVSEMQRSRLEHSQKKISAKRHLNQQTSLAHADLGSDQKFD-- 779
             E LKKLE+LK+A+D M++++MQ S LE S +K+SA   L Q+       +  D + D  
Sbjct: 735  IEELKKLENLKVALDDMSMAKMQLSNLERSWEKVSA---LKQKV------VSRDDELDLQ 785

Query: 780  -----VTNNGDRFNTPSVQKTASASPPSLARFSWIKRFADLVFKHSGENSVENDEEKSPT 834
                 V+N+ D +N+ S+++    +P S   FSWIKR  +L+FK S E S          
Sbjct: 786  NGVSTVSNSEDGYNS-SMERQNGLTPSSATPFSWIKRCTNLIFKTSPEKST--------- 835

Query: 835  SDHEDASLTINSRKRQPVRYSFGEPKVILEVPSENEVVKRTVDLESENNQNAAQKCKQSV 894
                             + + + E      VPSE       + LES   +  A     S+
Sbjct: 836  -----------------LMHHYEEEGG---VPSEK------LKLESSRREEKAYTEGLSI 869

Query: 895  SEDGIHAARKRRVDVDCVDPSELLMQNNKRRKQQEDFPRNSSEEAINHGAVAEQSNLPED 954
            + + + A RKRR +    + SE    NNK+RK   D  +  S+EA     ++   N+PED
Sbjct: 870  AVERLEAGRKRRGNTSGDETSE--PSNNKKRKH--DVTQKYSDEADTQSVISSPQNVPED 925

Query: 955  QHTLTSKNKSNVPEGLHTLTSNNHTQGGNEEASILIVDKIIKISEVTCEMTDADNFIN 1012
            +H L S +++  P G+                  +++ + +KI+ VTCE T+  N + 
Sbjct: 926  KHELPS-SQTQTPSGM------------------VVISETVKITRVTCE-TEVTNKVT 963

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|238481650|ref|NP_001154799.1| protein little nuclei4 [Arabidopsis thaliana] gi|26397174|sp|Q9FLH0.1|NMCP_ARATH RecName: Full=Putative nuclear matrix constituent protein 1-like protein; Short=NMCP1-like gi|10177335|dbj|BAB10684.1| nuclear matrix constituent protein 1 (NMCP1)-like [Arabidopsis thaliana] gi|332010721|gb|AED98104.1| protein little nuclei4 [Arabidopsis thaliana]

 Score =  916 bits (2368), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 535/1045 (51%), Positives = 730/1045 (69%), Gaps = 103/1045 (9%)

Query: 2    ASPSSGRLAITPSSRVLQSPLSDESIWKRLKEAGLDEVSIKRRDKAALIAYIAKLETEIF 61
            ++ ++ RL ITP+SRVL+SPL++E +WKRLK+AG DE SIK RDKAALIAYIAKLE+E++
Sbjct: 15   STAATNRLTITPNSRVLKSPLTEEIMWKRLKDAGFDEQSIKNRDKAALIAYIAKLESEVY 74

Query: 62   EHQHHMGLLILEKKELASKYEQIKASAEAAELLQKHDRASHLSAIAEARKREESLKKTLG 121
            ++QH+MGLL+LEK EL+S+YE+IKAS + ++L    ++++++SA+AEA+KREESLKK +G
Sbjct: 75   DYQHNMGLLLLEKNELSSQYEEIKASVDESDLTHMREKSAYVSALAEAKKREESLKKDVG 134

Query: 122  VEKECIASLEKAVHEIRAESAETKVAADSKFAEARCMVENAQKKFAEAEAKLHAAESLQA 181
            + KECI+SLEK +HE+RAE AETKV+A S  +EA  M+E+A KK A+AEAK+ AAE+LQA
Sbjct: 135  IAKECISSLEKTLHEMRAECAETKVSAGSTMSEAHVMIEDALKKLADAEAKMRAAEALQA 194

Query: 182  EANRYHRSAERKLQEVVAREDDLSRRIASFKADCEEKEREIIRERQSLSDRKKILQQEHE 241
            EANRYHR AERKL+EV +REDDL+RR+ASFK++CE KE E++ ERQ+L++R+K LQQEHE
Sbjct: 195  EANRYHRIAERKLKEVESREDDLTRRLASFKSECETKENEMVIERQTLNERRKSLQQEHE 254

Query: 242  RLLDAQTLLNEREDHILSKLQELSRKEKELEASRANVEEKFKALNEEKSNLDLTLVSLLK 301
            RLLDAQ  LN+REDHI ++ QEL+  EK L+ ++   EE+ KA  ++KSNL++ L    K
Sbjct: 255  RLLDAQVSLNQREDHIFARSQELAELEKGLDTAKTTFEEERKAFEDKKSNLEIALALCAK 314

Query: 302  REE---------------------------AVIEREASLQKKEQKLLVSQETLASKESNE 334
            REE                           AV ERE+SL KKEQ+LLV++E +ASKES  
Sbjct: 315  REEVCFYSHNSLLFLVLHYRSSKKFLGDKIAVSERESSLLKKEQELLVAEEKIASKESEL 374

Query: 335  IQKIIANHESALRVKQSEFEAELAIKYKLAEDEIEKKRRAWELRDLDLGQREESLLEREH 394
            IQ ++AN E  LR ++S+ EAEL  K K  E EIE KRRAWELR++D+ QRE+ + E+EH
Sbjct: 375  IQNVLANQEVILRKRKSDVEAELECKSKSVEVEIESKRRAWELREVDIKQREDLVGEKEH 434

Query: 395  DLEVQSRALVDKEKDLVERSHLLEEKENKLIAFEKEADLKKSLLQKEKEEVNIIKSDLQK 454
            DLEVQSRAL +KEKD+ E+S  L+EKE  L+A E++ + K ++L+ EKE +  +  +LQ+
Sbjct: 435  DLEVQSRALAEKEKDITEKSFNLDEKEKNLVATEEDINRKTTMLEDEKERLRKLDLELQQ 494

Query: 455  SLSSLDEKKKQVNCAKDKLEAMKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLE 514
            SL+SL++K+K+V+ A  KLEA+KSE  ELS LE+KLKEELD +RAQKLE++ E D+L++E
Sbjct: 495  SLTSLEDKRKRVDSATQKLEALKSETSELSTLEMKLKEELDDLRAQKLEMLAEADRLKVE 554

Query: 515  KAKFEAEWEMIDEKREELRKEAERVAVERVVVSKSLKDERDSLRQERDAMRDQHKRDVDS 574
            KAKFEAEWE ID KREELRKEAE +  +R   S  LKDERD++++ERDA+R+QHK DV+S
Sbjct: 555  KAKFEAEWEHIDVKREELRKEAEYITRQREAFSMYLKDERDNIKEERDALRNQHKNDVES 614

Query: 575  LNREREEFMNKMVHEHSEWFTKIQQERADFLLGIEMQKRDLENCIEKRREELESSFRERE 634
            LNREREEFMNKMV EHSEW +KIQ+ERADFLLGIEMQKR+LE CIE +REELE+S R+RE
Sbjct: 615  LNREREEFMNKMVEEHSEWLSKIQRERADFLLGIEMQKRELEYCIENKREELENSSRDRE 674

Query: 635  KAFEEEKMREFQQISSLKEKAEKELEQVTLEIKRLDLERMEINMDRQRRDREWAELNNSI 694
            KAFE+EK  E ++I SLKE AEKELE V +E+KRLD ER+EI +DR+RR+REWAEL +S+
Sbjct: 675  KAFEQEKKLEEERIQSLKEMAEKELEHVQVELKRLDAERLEIKLDRERREREWAELKDSV 734

Query: 695  EELMVQRQKLEEQRQLLHADREEIQAESERLKKLEDLKIAVDYMAVSEMQRSRLEHSQKK 754
            EEL VQR+KLE QR +L A+R+EI+ E E LKKLE+LK+A+D M++++MQ S LE S +K
Sbjct: 735  EELKVQREKLETQRHMLRAERDEIRHEIEELKKLENLKVALDDMSMAKMQLSNLERSWEK 794

Query: 755  ISAKRHLNQQTSLAHADLGSDQKFD-------VTNNGDRFNTPSVQKTASASPPSLARFS 807
            +SA   L Q+       +  D + D       V+N+ D +N+ S+++    +P S   FS
Sbjct: 795  VSA---LKQKV------VSRDDELDLQNGVSTVSNSEDGYNS-SMERQNGLTPSSATPFS 844

Query: 808  WIKRFADLVFKHSGENSVENDEEKSPTSDHEDASLTINSRKRQPVRYSFGEPKVILEVPS 867
            WIKR  +L+FK S E S                           + + + E      VPS
Sbjct: 845  WIKRCTNLIFKTSPEKST--------------------------LMHHYEEEGG---VPS 875

Query: 868  ENEVVKRTVDLESENNQNAAQKCKQSVSEDGIHAARKRRVDVDCVDPSELLMQNNKRRKQ 927
            E       + LES   +  A     S++ + + A RKRR +    + SE    NNK+RK 
Sbjct: 876  EK------LKLESSRREEKAYTEGLSIAVERLEAGRKRRGNTSGDETSE--PSNNKKRKH 927

Query: 928  QEDFPRNSSEEAINHGAVAEQSNLPEDQHTLTSKNKSNVPEGLHTLTSNNHTQGGNEEAS 987
              D  +  S+EA     ++   N+PED+H L S +++  P G+                 
Sbjct: 928  --DVTQKYSDEADTQSVISSPQNVPEDKHELPS-SQTQTPSGM----------------- 967

Query: 988  ILIVDKIIKISEVTCEMTDADNFIN 1012
             +++ + +KI+ VTCE T+  N + 
Sbjct: 968  -VVISETVKITRVTCE-TEVTNKVT 990

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|334188655|ref|NP_001190627.1| branched-chain-amino-acid aminotransferase 5 [Arabidopsis thaliana] gi|332010724|gb|AED98107.1| branched-chain-amino-acid aminotransferase 5 [Arabidopsis thaliana]

 Score =  915 bits (2364), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 529/1017 (52%), Positives = 723/1017 (71%), Gaps = 83/1017 (8%)

Query: 2    ASPSSGRLAITPSSRVLQSPLSDESIWKRLKEAGLDEVSIKRRDKAALIAYIAKLETEIF 61
            ++ ++ RL ITP+SRVL+SPL++E +WKRLK+AG DE SIK RDKAALIAYIAKLE+E++
Sbjct: 15   STAATNRLTITPNSRVLKSPLTEEIMWKRLKDAGFDEQSIKNRDKAALIAYIAKLESEVY 74

Query: 62   EHQHHMGLLILEKKELASKYEQIKASAEAAELLQKHDRASHLSAIAEARKREESLKKTLG 121
            ++QH+MGLL+LEK EL+S+YE+IKAS + ++L    ++++++SA+AEA+KREESLKK +G
Sbjct: 75   DYQHNMGLLLLEKNELSSQYEEIKASVDESDLTHMREKSAYVSALAEAKKREESLKKDVG 134

Query: 122  VEKECI--------ASLEKAVHEIRAESAETKVAADSKFAEARCMVENAQKKFAEAEAKL 173
            + K+          + LEK +HE+RAE AETKV+A S  +EA  M+E+A KK A+AEAK+
Sbjct: 135  IAKDLFIDFVLFFFSQLEKTLHEMRAECAETKVSAGSTMSEAHVMIEDALKKLADAEAKM 194

Query: 174  HAAESLQAEANRYHRSAERKLQEVVAREDDLSRRIASFKADCEEKEREIIRERQSLSDRK 233
             AAE+LQAEANRYHR AERKL+EV +REDDL+RR+ASFK++CE KE E++ ERQ+L++R+
Sbjct: 195  RAAEALQAEANRYHRIAERKLKEVESREDDLTRRLASFKSECETKENEMVIERQTLNERR 254

Query: 234  KILQQEHERLLDAQTLLNEREDHILSKLQELSRKEKELEASRANVEEKFKALNEEKSNLD 293
            K LQQEHERLLDAQ  LN+REDHI ++ QEL+  EK L+ ++   EE+ KA  ++KSNL+
Sbjct: 255  KSLQQEHERLLDAQVSLNQREDHIFARSQELAELEKGLDTAKTTFEEERKAFEDKKSNLE 314

Query: 294  LTLVSLLKREEAVIEREASLQKKEQKLLVSQETLASKESNEIQKIIANHESALRVKQSEF 353
            + L    KREEAV ERE+SL KKEQ+LLV++E +ASKES  IQ ++AN E  LR ++S+ 
Sbjct: 315  IALALCAKREEAVSERESSLLKKEQELLVAEEKIASKESELIQNVLANQEVILRKRKSDV 374

Query: 354  EAELAIKYKLAEDEIEKKRRAWELRDLDLGQREESLLEREHDLEVQSRALVDKEKDLVER 413
            EAEL  K K  E EIE KRRAWELR++D+ QRE+ + E+EHDLEVQSRAL +KEKD+ E+
Sbjct: 375  EAELECKSKSVEVEIESKRRAWELREVDIKQREDLVGEKEHDLEVQSRALAEKEKDITEK 434

Query: 414  SHLLEEKENKLIAFEKEADLKKSLLQKEKEEVNIIKSDLQKSLSSLDEKKKQVNCAKDKL 473
            S  L+EKE  L+A E++ + K ++L+ EKE +  +  +LQ+SL+SL++K+K+V+ A  KL
Sbjct: 435  SFNLDEKEKNLVATEEDINRKTTMLEDEKERLRKLDLELQQSLTSLEDKRKRVDSATQKL 494

Query: 474  EAMKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELR 533
            EA+KSE  ELS LE+KLKEELD +RAQKLE++ E D+L++EKAKFEAEWE ID KREELR
Sbjct: 495  EALKSETSELSTLEMKLKEELDDLRAQKLEMLAEADRLKVEKAKFEAEWEHIDVKREELR 554

Query: 534  KEAERVAVERVVVSKSLKDERDSLRQERDAMRDQHKRDVDSLNREREEFMNKMVHEHSEW 593
            KEAE +  +R   S  LKDERD++++ERDA+R+QHK DV+SLNREREEFMNKMV EHSEW
Sbjct: 555  KEAEYITRQREAFSMYLKDERDNIKEERDALRNQHKNDVESLNREREEFMNKMVEEHSEW 614

Query: 594  FTKIQQERADFLLGIEMQKRDLENCIEKRREELESSFREREKAFEEEKMREFQQISSLKE 653
             +KIQ+ERADFLLGIEMQKR+LE CIE +REELE+S R+REKAFE+EK  E ++I SLKE
Sbjct: 615  LSKIQRERADFLLGIEMQKRELEYCIENKREELENSSRDREKAFEQEKKLEEERIQSLKE 674

Query: 654  KAEKELEQVTLEIKRLDLERMEINMDRQRRDREWAELNNSIEELMVQRQKLEEQRQLLHA 713
             AEKELE V +E+KRLD ER+EI +DR+RR+REWAEL +S+EEL VQR+KLE QR +L A
Sbjct: 675  MAEKELEHVQVELKRLDAERLEIKLDRERREREWAELKDSVEELKVQREKLETQRHMLRA 734

Query: 714  DREEIQAESERLKKLEDLKIAVDYMAVSEMQRSRLEHSQKKISAKRHLNQQTSLAHADLG 773
            +R+EI+ E E LKKLE+LK+A+D M++++MQ S LE S +K+SA   L Q+       + 
Sbjct: 735  ERDEIRHEIEELKKLENLKVALDDMSMAKMQLSNLERSWEKVSA---LKQKV------VS 785

Query: 774  SDQKFD-------VTNNGDRFNTPSVQKTASASPPSLARFSWIKRFADLVFKHSGENSVE 826
             D + D       V+N+ D +N+ S+++    +P S   FSWIKR  +L+FK S E S  
Sbjct: 786  RDDELDLQNGVSTVSNSEDGYNS-SMERQNGLTPSSATPFSWIKRCTNLIFKTSPEKST- 843

Query: 827  NDEEKSPTSDHEDASLTINSRKRQPVRYSFGEPKVILEVPSENEVVKRTVDLESENNQNA 886
                                     + + + E      VPSE       + LES   +  
Sbjct: 844  -------------------------LMHHYEEEGG---VPSEK------LKLESSRREEK 869

Query: 887  AQKCKQSVSEDGIHAARKRRVDVDCVDPSELLMQNNKRRKQQEDFPRNSSEEAINHGAVA 946
            A     S++ + + A RKRR +    + SE    NNK+RK   D  +  S+EA     ++
Sbjct: 870  AYTEGLSIAVERLEAGRKRRGNTSGDETSE--PSNNKKRKH--DVTQKYSDEADTQSVIS 925

Query: 947  EQSNLPEDQHTLTSKNKSNVPEGLHTLTSNNHTQGGNEEASILIVDKIIKISEVTCE 1003
               N+PED+H L S +++  P G+                  +++ + +KI+ VTCE
Sbjct: 926  SPQNVPEDKHELPS-SQTQTPSGM------------------VVISETVKITRVTCE 963

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|7486519|pir||T05892 hypothetical protein F6H11.110 - Arabidopsis thaliana gi|2827709|emb|CAA16682.1| predicted protein [Arabidopsis thaliana]

 Score =  912 bits (2356), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 534/1038 (51%), Positives = 727/1038 (70%), Gaps = 106/1038 (10%)

Query: 2    ASPSSGRLAITPSSRVLQSPLSDESIWKRLKEAGLDEVSIKRRDKAALIAYIAKLETEIF 61
            ++ ++ RL ITP+SRVL+SPL++E +WKRLK+AG DE SIK RDKAALIAYIAKLE+E++
Sbjct: 15   STAATNRLTITPNSRVLKSPLTEEIMWKRLKDAGFDEQSIKNRDKAALIAYIAKLESEVY 74

Query: 62   EHQHHMGLLILEKKELASKYEQIKASAEAAELLQKHDRASHLSAIAEARKREESLKKTLG 121
            ++QH+MGLL+LEK EL+S+YE+IKAS + ++L    ++++++SA+AEA+KREESLKK +G
Sbjct: 75   DYQHNMGLLLLEKNELSSQYEEIKASVDESDLTHMREKSAYVSALAEAKKREESLKKDVG 134

Query: 122  VEKECIASLEKAVHEIRAESAETKVAADSKFAEARCMVENAQKKFAEAEAKLHAAESLQA 181
            + KECI+SLEK +HE+RAE AETKV+A S  +EA  M+E+A KK A+AEAK+ AAE+LQA
Sbjct: 135  IAKECISSLEKTLHEMRAECAETKVSAGSTMSEAHVMIEDALKKLADAEAKMRAAEALQA 194

Query: 182  EANRYHRSAERKLQEVVAREDDLSRRIASFKADCEEKEREIIRERQSLSDRKKILQQEHE 241
            EANRYHR AERKL+EV +REDDL+RR+ASFK++CE KE E++ ERQ+L++R+K LQQEHE
Sbjct: 195  EANRYHRIAERKLKEVESREDDLTRRLASFKSECETKENEMVIERQTLNERRKSLQQEHE 254

Query: 242  RLLDAQTLLNEREDHILSKLQELSRKEKELEASRANVEEKFKALNEEKSNLDLTLVSLLK 301
            RLLDAQ  LN+REDHI ++ QEL+  EK L+ ++   EE+ KA  ++KSNL++ L    K
Sbjct: 255  RLLDAQVSLNQREDHIFARSQELAELEKGLDTAKTTFEEERKAFEDKKSNLEIALALCAK 314

Query: 302  REE---------------------------AVIEREASLQKKEQKLLVSQETLASKESNE 334
            REE                           AV ERE+SL KKEQ+LLV++E +ASKES  
Sbjct: 315  REEVCFYSHNSLLFLVLHYRSSKKFLGDKIAVSERESSLLKKEQELLVAEEKIASKESEL 374

Query: 335  IQKIIANHESALRVKQSEFEAELAIKYKLAEDEIEKKRRAWELRDLDLGQREESLLEREH 394
            IQ ++AN E  LR ++S+ EAEL  K K  E EIE KRRAWELR++D+ QRE+ + E+EH
Sbjct: 375  IQNVLANQEVILRKRKSDVEAELECKSKSVEVEIESKRRAWELREVDIKQREDLVGEKEH 434

Query: 395  DLEVQSRALVDKEKDLVERSHLLEEKENKLIAFEKEADLKKSLLQKEKEEVNIIKSDLQK 454
            DLEVQSRAL +KEKD+ E+S  L+EKE  L+A E++ + K ++L+ EKE +  +  +LQ+
Sbjct: 435  DLEVQSRALAEKEKDITEKSFNLDEKEKNLVATEEDINRKTTMLEDEKERLRKLDLELQQ 494

Query: 455  SLSSLDEKKKQVNCAKDKLEAMKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLE 514
            SL+SL++K+K+V+ A  KLEA+KSE  ELS LE+KLKEELD +RAQKLE++ E D+L++E
Sbjct: 495  SLTSLEDKRKRVDSATQKLEALKSETSELSTLEMKLKEELDDLRAQKLEMLAEADRLKVE 554

Query: 515  KAKFEAEWEMIDEKREELRKEAERVAVERVVVSKSLKDERDSLRQERDAMRDQHKRDVDS 574
            KAKFEAEWE ID KREELRKEAE +  +R   S  LKDERD++++ERDA+R+QHK DV+S
Sbjct: 555  KAKFEAEWEHIDVKREELRKEAEYITRQREAFSMYLKDERDNIKEERDALRNQHKNDVES 614

Query: 575  LNREREEFMNKMVHEHSEWFTKIQQERADFLLGIEMQKRDLENCIEKRREELESSFRERE 634
            LNREREEFMNKMV EHSEW +KIQ+ERADFLLGIEMQKR+LE CIE +REELE+S R+RE
Sbjct: 615  LNREREEFMNKMVEEHSEWLSKIQRERADFLLGIEMQKRELEYCIENKREELENSSRDRE 674

Query: 635  KAFEEEKMREFQQISSLKEKAEKELEQVTLEIKRLDLERMEINMDRQRRDREWAELNNSI 694
            KAFE+EK  E ++I SLKE AEKELE V +E+KRLD ER+EI +DR+RR+REWAEL +S+
Sbjct: 675  KAFEQEKKLEEERIQSLKEMAEKELEHVQVELKRLDAERLEIKLDRERREREWAELKDSV 734

Query: 695  EELMVQRQKLEEQRQLLHADREEIQAESERLKKLEDLKIAVDYMAVSEMQRSRLEHSQKK 754
            EEL VQR+KLE QR +L A+R+EI+ E E LKKLE+LK+A+D M++++MQ S LE S +K
Sbjct: 735  EELKVQREKLETQRHMLRAERDEIRHEIEELKKLENLKVALDDMSMAKMQLSNLERSWEK 794

Query: 755  ISAKRHLNQQTSLAHADLGSDQKFD-------VTNNGDRFNTPSVQKTASASPPSLARFS 807
            +SA   L Q+       +  D + D       V+N+ D +N+ S+++    +P S   FS
Sbjct: 795  VSA---LKQKV------VSRDDELDLQNGVSTVSNSEDGYNS-SMERQNGLTPSSATPFS 844

Query: 808  WIKRFADLVFKHSGENS--VENDEEKSPTSDHEDASLTINSRKRQPVRYSFGEPKVILEV 865
            WIKR  +L+FK S E S  + + EE+                                 V
Sbjct: 845  WIKRCTNLIFKTSPEKSTLMHHYEEEGG-------------------------------V 873

Query: 866  PSENEVVKRTVDLESENNQNAAQKCKQSVSEDGIHAARKRRVDVDCVDPSELLMQNNKRR 925
            PSE       + LES   +  A     S++ + + A RKRR +    + SE    NNK+R
Sbjct: 874  PSEK------LKLESSRREEKAYTEGLSIAVERLEAGRKRRGNTSGDETSE--PSNNKKR 925

Query: 926  KQQEDFPRNSSEEAINHGAVAEQSNLPEDQHTLTSKNKSNVPEGLHTLTSNNHTQGGNEE 985
            K   D  +  S+EA     ++   N+PED+H L S +++  P G+               
Sbjct: 926  KH--DVTQKYSDEADTQSVISSPQNVPEDKHELPS-SQTQTPSGM--------------- 967

Query: 986  ASILIVDKIIKISEVTCE 1003
               +++ + +KI+ VTCE
Sbjct: 968  ---VVISETVKITRVTCE 982

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|284807022|dbj|BAI67716.1| nuclear matrix constituent protein 2 [Apium graveolens]

 Score =  801 bits (2070), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 453/828 (54%), Positives = 623/828 (75%), Gaps = 18/828 (2%)

Query: 1   MASP-----SSGRLAITPSSRVLQSPLSDESIWKRLKEAGLDEVSIKRRDKAALIAYIAK 55
           M++P      S +  +T S RVL++  SD+ IWKRL+EAG DE SIKRRDKA+LIAYI K
Sbjct: 1   MSTPRLTVIQSDKTTVTSSPRVLRN--SDDDIWKRLEEAGFDEDSIKRRDKASLIAYITK 58

Query: 56  LETEIFEHQHHMGLLILEKKELASKYEQIKASAEAAELLQKHDRASHLSAIAEARKREES 115
           LE+EI++HQ+ MGLLI+E+KE  SK+EQ +A+  +AEL++KHD+ASH++A+AEA+KRE++
Sbjct: 59  LESEIYDHQYQMGLLIMERKEWVSKFEQTEAALNSAELMRKHDKASHVAALAEAKKREDN 118

Query: 116 LKKTLGVEKECIASLEKAVHEIRAESAETKVAADSKFAEARCMVENAQKKFAEAEAKLHA 175
           LKK + +E+EC+A++EK +HE+RAE AETKV+ADSK AEAR M+E+A KK +EA+AK+ A
Sbjct: 119 LKKAIEIERECLANIEKTLHELRAEYAETKVSADSKLAEARSMMEDALKKLSEADAKMLA 178

Query: 176 AESLQAEANRYHRSAERKLQEVVAREDDLSRRIASFKADCEEKEREIIRERQSLSDRKKI 235
           AESL+AEA R+HR+AERKL EV AREDDL RR ASFK +C+ K+ E + ERQSL +R+K 
Sbjct: 179 AESLEAEAGRFHRAAERKLHEVEAREDDLRRRAASFKTECDTKDEEFLHERQSLCERQKS 238

Query: 236 LQQEHERLLDAQTLLNEREDHILSKLQELSRKEKELEASRANVEEKFKALNEEKSNLDLT 295
           LQQ  +RL+D Q LLN+RE HI  + QEL+RKEKELEAS+  + E+ + L EE++NL + 
Sbjct: 239 LQQSQQRLVDGQELLNKRESHIFDRTQELNRKEKELEASKLKLGEELQVLAEEQANLKIK 298

Query: 296 LVSLLKREEAVIEREASLQKKEQKLLVSQETLASKESNEIQKIIANHESALRVKQSEFEA 355
             SL  REE V +RE  ++K+E+ +LV Q+ L  KES  IQ+++AN+E++L  K+S+FEA
Sbjct: 299 ASSLSLREEVVTKRECEVKKREEGVLVLQDKLEKKESERIQQLLANYEASLSNKKSDFEA 358

Query: 356 ELAIKYKLAEDEIEKKRRAWELRDLDLGQREESLLEREHDLEVQSRALVDKEKDLVERSH 415
           EL ++ KL  D+IE KRR WELR++DL  REE + E+EH+L++QSRA+VDKE  L ER  
Sbjct: 359 ELEMRRKLVHDDIENKRRDWELREVDLHHREELISEKEHELDMQSRAVVDKESYLTERFS 418

Query: 416 LLEEKENKLIAFEKEADLKKSLLQKEKEEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEA 475
           LL EKEN L A +KE   K+SLLQKEKEE+N  K DLQKSL +L  +K+Q++ A++K++A
Sbjct: 419 LLVEKENSLDAMKKEIQSKESLLQKEKEEINSSKLDLQKSLDALKNEKQQIHHAEEKMKA 478

Query: 476 MKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKE 535
           MKSE  EL VLE KLKEE++ +RAQK EL VE D+++  K KFE EW+ IDEKR+EL+KE
Sbjct: 479 MKSETDELFVLESKLKEEIETIRAQKQELEVEADEMKELKLKFEVEWQSIDEKRKELQKE 538

Query: 536 AERVAVERVVVSKSLKDERDSLRQERDAMRDQHKRDVDSLNREREEFMNKMVHEHSEWFT 595
           AE +  ER  + ++LKDER+SL+ E+DA+ D++ R+ +SL+R+REEF++KM HE SE F+
Sbjct: 539 AECINGEREALYRTLKDERNSLKLEKDAIWDEYTRNNESLSRDREEFLSKMEHERSELFS 598

Query: 596 KIQQERADFLLGIEMQKRDLENCIEKRREELESSFREREKAFEEEKMREFQQISSLKEKA 655
            IQ+ER+DF L  E+Q +DLE+ + KRREE+ES+  ERE+AFEEEK +E  +I SL+E  
Sbjct: 599 NIQKERSDFSLAFEVQTKDLEDRLAKRREEIESNLAERERAFEEEKRKELMRIDSLRETL 658

Query: 656 EKELEQVTLEIKRLDLERMEINMDRQRRDREWAELNNSIEELMVQRQKLEEQRQLLHADR 715
            +E EQV LE+ RLD ER EIN+DR++RDREWAELN+SIEEL  QRQKLE+QR+L+ AD+
Sbjct: 659 ARETEQVNLELNRLDTERREINLDREKRDREWAELNSSIEELKAQRQKLEKQRELMRADK 718

Query: 716 EEIQAESERLKKLEDLKIAVDYMAVSEMQRSRLEHSQKKISAKRHLNQQTSLAHADLGSD 775
           E+I  + E LK+LED K+  D +A++++Q+S ++ S K++SA+R L QQ+       G D
Sbjct: 719 EDILVQIEHLKQLEDRKVVPDRLALTDIQQSDVQPS-KRVSARRFLKQQS-------GID 770

Query: 776 QKFDVTNNGDRFNTPSVQKTASASPPSLARFSWIKRFADLVFKHSGEN 823
                 NNG   NT   + +   SPP    FSW+KR A  + +    N
Sbjct: 771 SGCRSENNG---NTSPGKSSVIISPPVSTPFSWLKRCASSLLEQKASN 815

Source: Apium graveolens

Species: Apium graveolens

Genus: Apium

Family: Apiaceae

Order: Apiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	1075
TAIR|locus:2169950	1042	LINC4 "LITTLE NUCLEI4" [Arabid	0.713	0.736	0.379	4.1e-120
TAIR|locus:2031875	1128	LINC2 "LITTLE NUCLEI2" [Arabid	0.669	0.638	0.264	3.3e-75
TAIR|locus:2019529	1132	LINC1 "AT1G67230" [Arabidopsis	0.608	0.577	0.276	8.4e-74
TAIR|locus:2012423	1085	LINC3 "LITTLE NUCLEI3" [Arabid	0.533	0.528	0.284	9e-59
GENEDB_PFALCIPARUM|PF11_0486	2055	PF11_0486 "MAEBL, putative" [P	0.324	0.169	0.277	2.7e-14
UNIPROTKB|Q8IHP3	2055	PF11_0486 "MAEBL, putative" [P	0.324	0.169	0.277	2.7e-14
ZFIN|ZDB-GENE-050208-317	1422	tnks1bp1 "tankyrase 1 binding	0.329	0.248	0.238	8.2e-17
ZFIN|ZDB-GENE-060503-506	1041	si:ch211-250g4.3 "si:ch211-250	0.502	0.518	0.206	6.9e-15
DICTYBASE|DDB_G0288069	1082	DDB_G0288069 [Dictyostelium di	0.370	0.367	0.245	2.5e-14
UNIPROTKB|G1K307	1972	MYH11 "Myosin-11" [Gallus gall	0.506	0.275	0.219	3.2e-14

TAIR|locus:2169950 LINC4 "LITTLE NUCLEI4" [Arabidopsis thaliana (taxid:3702)]

 Score = 1182 (421.1 bits), Expect = 4.1e-120, P = 4.1e-120
 Identities = 301/793 (37%), Positives = 421/793 (53%)

Query:    79 SKYEQIKASAEAAELLQKHDRASHLSAIAEARKREESLKKTLGVEKECIASLEKAVHEIR 138
             S Y    A A+  E   K D       I+   K    ++      K    S     H + 
Sbjct:   113 SAYVSALAEAKKREESLKKDVGIAKECISSLEKTLHEMRAECAETKVSAGSTMSEAH-VM 171

Query:   139 AESAETKVA-ADSKFAEARCMVENAQKKFAEAEAKLHAAESLQAEANR----YHRSAERK 193
              E A  K+A A++K   A  +   A +    AE KL   ES + +  R    +    E K
Sbjct:   172 IEDALKKLADAEAKMRAAEALQAEANRYHRIAERKLKEVESREDDLTRRLASFKSECETK 231

Query:   194 LQEVVAREDDLSRRIASFKADCXXXXXXXXXXXQSLSDRKKILQQEHERLLDAQTLLNER 253
               E+V     L+ R  S + +             SL+ R+  +    + L + +  L+  
Sbjct:   232 ENEMVIERQTLNERRKSLQQE----HERLLDAQVSLNQREDHIFARSQELAELEKGLDTA 287

Query:   254 EDHILSKLQELSRKEKELEASRANVEEKFKA-LNEEKSNLDLTL-----VSLLKREEAVI 307
             +     + +    K+  LE + A   ++ +       S L L L        L  + AV 
Sbjct:   288 KTTFEEERKAFEDKKSNLEIALALCAKREEVCFYSHNSLLFLVLHYRSSKKFLGDKIAVS 347

Query:   308 EREASLQKKEQKLLVSQETLASKESNEIQKIIANHESALRVKQSEFEAELAIKYKLAEDE 367
             ERE+SL KKEQ+LLV++E +ASKES  IQ ++AN E  LR ++S+ EAEL  K K  E E
Sbjct:   348 ERESSLLKKEQELLVAEEKIASKESELIQNVLANQEVILRKRKSDVEAELECKSKSVEVE 407

Query:   368 IEKKRRAWELRDLDLGQREESLLEREHDLEVQSRALVDKEKDLVERSHLLEEKENKLIAF 427
             IE KRRAWELR++D+ QRE+ + E+EHDLEVQSRAL +KEKD+ E+S  L+EKE  L+A 
Sbjct:   408 IESKRRAWELREVDIKQREDLVGEKEHDLEVQSRALAEKEKDITEKSFNLDEKEKNLVAT 467

Query:   428 EKEADXXXXXXXXXXXXVNIIXXXXXXXXXXXXXXXXXVNCAKDKLEAMKSEAGELSVLE 487
             E++ +            +  +                 V+ A  KLEA+KSE  ELS LE
Sbjct:   468 EEDINRKTTMLEDEKERLRKLDLELQQSLTSLEDKRKRVDSATQKLEALKSETSELSTLE 527

Query:   488 IKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDXXXXXXXXXXXXXXXXXXXXX 547
             +KLKEELD +RAQKLE++ E D+L++EKAKFEAEWE ID                     
Sbjct:   528 MKLKEELDDLRAQKLEMLAEADRLKVEKAKFEAEWEHIDVKREELRKEAEYITRQREAFS 587

Query:   548 XXXKDERDSLRQERDAMRDQHKRDVDSLNREREEFMNKMVHEHSEWFTKIQQERADFLLG 607
                KDERD++++ERDA+R+QHK DV+SLNREREEFMNKMV EHSEW +KIQ+ERADFLLG
Sbjct:   588 MYLKDERDNIKEERDALRNQHKNDVESLNREREEFMNKMVEEHSEWLSKIQRERADFLLG 647

Query:   608 IEMQKRDLENCIXXXXXXXXXXXXXXXXXXXXXXXXXXQQISSXXXXXXXXXXQVTLEIK 667
             IEMQKR+LE CI                          ++I S           V +E+K
Sbjct:   648 IEMQKRELEYCIENKREELENSSRDREKAFEQEKKLEEERIQSLKEMAEKELEHVQVELK 707

Query:   668 RLDLERMEINMDRQRRDREWAELNNSIEELMVXXXXXXXXXXXXHADREEIQAESERLKK 727
             RLD ER+EI +DR+RR+REWAEL +S+EEL V             A+R+EI+ E E LKK
Sbjct:   708 RLDAERLEIKLDRERREREWAELKDSVEELKVQREKLETQRHMLRAERDEIRHEIEELKK 767

Query:   728 LEDLKIAVDYMAVSEMQRSRLEHSQKKISAKRHLNQQTSLAHADLGSDQKFD-VTNNGDR 786
             LE+LK+A+D M++++MQ S LE S +K+SA   L Q+      +L        V+N+ D 
Sbjct:   768 LENLKVALDDMSMAKMQLSNLERSWEKVSA---LKQKVVSRDDELDLQNGVSTVSNSEDG 824

Query:   787 FNTPSVQKTASASPPSLARFSWIKRFADLVFKHSGENS--VENDEEKSPTSDHEDASLTI 844
             +N+ S+++    +P S   FSWIKR  +L+FK S E S  + + EE+      +   L +
Sbjct:   825 YNS-SMERQNGLTPSSATPFSWIKRCTNLIFKTSPEKSTLMHHYEEEGGVPSEK---LKL 880

Query:   845 NSRKRQPVRYSFG 857
              S +R+   Y+ G
Sbjct:   881 ESSRREEKAYTEG 893

GO:0005634 "nucleus" evidence=ISM

GO:0009507 "chloroplast" evidence=IDA

GO:0005652 "nuclear lamina" evidence=IDA

GO:0006997 "nucleus organization" evidence=IMP

GO:0034399 "nuclear periphery" evidence=IDA

TAIR|locus:2031875 LINC2 "LITTLE NUCLEI2" [Arabidopsis thaliana (taxid:3702)]

 Score = 713 (256.0 bits), Expect = 3.3e-75, Sum P(3) = 3.3e-75
 Identities = 191/723 (26%), Positives = 339/723 (46%)

Query:    24 DESIWKRLKEAGL-DEVSIKRRDKAALIAYIAKLETEIFEHQHHMGLLILEKKELASKYE 82
             D   W+R +E GL +E S++++D+ AL+  I+ LE E++ +QH+MGLL++E KEL SK+E
Sbjct:    59 DMGDWRRFREVGLLNEASMEKKDQEALLEKISTLEKELYGYQHNMGLLLMENKELVSKHE 118

Query:    83 QI-KASAEAAELLQKHDRASHLSAIAEARKREESLKKTLGVEKECIASLEKAVHEIRAES 141
             Q+ +A  EA E+L K +++SHL A+    +REE+L+K LG+EK+C+  LEKA+ EI+ E+
Sbjct:   119 QLNQAFQEAQEIL-KREQSSHLYALTTVEQREENLRKALGLEKQCVQELEKALREIQEEN 177

Query:   142 AETKVAADSKFAEARCMVENAQKKFAEAEAKLHAAESLQAEANRYHRSAERKLQEVVARE 201
             ++ ++++++K  EA  +V +   + ++ E K+++AES  AEA R     + +L+EV  RE
Sbjct:   178 SKIRLSSEAKLVEANALVASVNGRSSDVENKIYSAESKLAEATRKSSELKLRLKEVETRE 237

Query:   202 DDLSRRIASFKADCXXXXXXXXXXXQSLSDRKKILQQEHERLLDAQTLLNEREDHILSKL 261
               L +   SF  +            + L++ +K LQ + E + + +  LN+RE+ +    
Sbjct:   238 SVLQQERLSFTKERESYEGTFQKQREYLNEWEKKLQGKEESITEQKRNLNQREEKVNEIE 297

Query:   262 QELSRKEKELEASRANVEEKFKALNEEKSNLDLTLVSLLKREEAVIEREASLQKKEQKLL 321
             ++L  KEKELE     V+       E + ++   L  L  +E+     + +L  KE +L 
Sbjct:   298 KKLKLKEKELEEWNRKVDLSMSKSKETEEDITKRLEELTTKEKEAHTLQITLLAKENELR 357

Query:   322 VSQETLASKESNEIQKIIANHESALRVKQSEFEAELAIKYKLAEDEIEKKRRAWELRDLD 381
               +E L ++E  EIQK+I + +  L  K  EFE E     K  + E+++K    E + ++
Sbjct:   358 AFEEKLIAREGTEIQKLIDDQKEVLGSKMLEFELECEEIRKSLDKELQRKIEELERQKVE 417

Query:   382 LGQREESLLEREHDLEVQSRALVDKEKDLVERSHLLEEKENKLIAFEKEADXXXXXXXXX 441
             +   EE L +R   +  +   + +KE DL  +   ++E+E  + A EK            
Sbjct:   418 IDHSEEKLEKRNQAMNKKFDRVNEKEMDLEAKLKTIKEREKIIQAEEKRLSLEKQQLLSD 477

Query:   442 XXXVNIIXXXXXXXXXXXXXXXXXVNCAKDKLEAMKSEAGELSVLEIKLKEELDVVRAQK 501
                +  +                 +      LE  K E  E   L+ +LK +++  R  +
Sbjct:   478 KESLEDLQQEIEKIRAEMTKKEEMIEEECKSLEIKKEEREEYLRLQSELKSQIEKSRVHE 537

Query:   502 LELMVETDKLQLEKAKFEAEWEMIDXXXXXXXXXXXXXXXXXXXXXXXXKDERDSLRQER 561
               L  E + L+ EK +FE EWE++D                          E + L++E 
Sbjct:   538 EFLSKEVENLKQEKERFEKEWEILDEKQAVYNKERIRISEEKEKFERFQLLEGERLKKEE 597

Query:   562 DAMRDQHKRDVDSLNREREEFMNKMVHEHSEWFTKIQQERADFLLGIEMQKRDLENCIXX 621
              A+R Q  +++D +  +RE F   M HE S    K++ E++  +  +EM +R+LE  +  
Sbjct:   598 SALRVQIMQELDDIRLQRESFEANMEHERSALQEKVKLEQSKVIDDLEMMRRNLEIELQE 657

Query:   622 XXXXXXXXXXXXXXXXXXXXXXXXQQISSXXXXXXXXXXQVTLEIKRLDLERMEINMDRQ 681
                                       I+           ++  +   L  E  EI   + 
Sbjct:   658 RKEQDEKDLLDRMAQFEDKRMAELSDINHQKQALNREMEEMMSKRSALQKESEEIAKHKD 717

Query:   682 RRDREWAELNNSIEELMVXXXXXXXXXXXXHADREEIQAESERLKKLEDLKIAVDYMAVS 741
             +   +  E++N I EL                +R    A  ++LK        V+   +S
Sbjct:   718 KLKEQQVEMHNDISELSTLSINLKKRREVFGRERSRFLAFVQKLKDCGSCGQLVNDFVLS 777

Query:   742 EMQ 744
             ++Q
Sbjct:   778 DLQ 780

GO:0005634 "nucleus" evidence=ISM

GO:0005654 "nucleoplasm" evidence=IDA

GO:0006997 "nucleus organization" evidence=IGI

GO:0006342 "chromatin silencing" evidence=RCA

GO:0007267 "cell-cell signaling" evidence=RCA

GO:0009616 "virus induced gene silencing" evidence=RCA

GO:0010050 "vegetative phase change" evidence=RCA

GO:0010267 "production of ta-siRNAs involved in RNA interference" evidence=RCA

GO:0016572 "histone phosphorylation" evidence=RCA

GO:0035196 "production of miRNAs involved in gene silencing by miRNA" evidence=RCA

GO:0051567 "histone H3-K9 methylation" evidence=RCA

TAIR|locus:2019529 LINC1 "AT1G67230" [Arabidopsis thaliana (taxid:3702)]

 Score = 736 (264.1 bits), Expect = 8.4e-74, Sum P(2) = 8.4e-74
 Identities = 181/654 (27%), Positives = 314/654 (48%)

Query:    45 DKAALIAYIAKLETEIFEHQHHMGLLILEKKELASKYEQIKASAEAAELLQKHDRASHLS 104
             D   L   I++LE E+FE+QH MGLL++EKKE +S+YE ++ + E      K +R +HL 
Sbjct:    48 DPRILPEKISELEKELFEYQHSMGLLLIEKKEWSSQYEALQQAFEEVNECLKQERNAHLI 107

Query:   105 AIAEARKREESLKKTLGVEKECIASLEKAVHEIRAESAETKVAADSKFAEARCMVENAQK 164
             AIA+  KREE L+K LG+EK+C   LEKA+ E+RAE+AE K  ADSK  EA  +V + ++
Sbjct:   108 AIADVEKREEGLRKALGIEKQCALDLEKALKELRAENAEIKFTADSKLTEANALVRSVEE 167

Query:   165 KFAEAEAKLHAAESLQAEANRYHRSAERKLQEVVAREDDLSRRIASFKADCXXXXXXXXX 224
             K  E EAKL A ++  AE +R     ERK +EV ARE  L R   S+ A+          
Sbjct:   168 KSLEVEAKLRAVDAKLAEVSRKSSDVERKAKEVEARESSLQRERFSYIAEREADEATLSK 227

Query:   225 XXQSLSDRKKILQQEHERLLDAQTLLNEREDHILSKLQELSRKEKELEASRANVEEKFKA 284
               + L + ++ LQ+  ER+  +Q ++ +RED      + + +K KELE ++  ++    A
Sbjct:   228 QREDLREWERKLQEGEERVAKSQMIVKQREDRANESDKIIKQKGKELEEAQKKIDAANLA 287

Query:   285 LNEEKSNLDLTLVSLLKREEAVIEREASLQKKEQKLLVSQETLASKESNEIQKIIANHES 344
             + + + ++   +  L  RE+     + S++ K ++L   QE L ++E   +Q+++  H++
Sbjct:   288 VKKLEDDVSSRIKDLALREQETDVLKKSIETKARELQALQEKLEAREKMAVQQLVDEHQA 347

Query:   345 ALRVKQSEFEAELAIKYKLAEDEIEKKRRAWELRDLDLGQREESLLEREHDLEVQSRALV 404
              L   Q EFE E+  K K  +D ++ K    E R+ +    EE + +RE  L+ +     
Sbjct:   348 KLDSTQREFELEMEQKRKSIDDSLKSKVAEVEKREAEWKHMEEKVAKREQALDRKLEKHK 407

Query:   405 DKEKDLVERSHLLEEKENKLIAFEKEADXXXXXXXXXXXXVNIIXXXXXXXXXXXXXXXX 464
             +KE D   R   +  +E  L + EK  +            +  +                
Sbjct:   408 EKENDFDLRLKGISGREKALKSEEKALETEKKKLLEDKEIILNLKALVEKVSGENQAQLS 467

Query:   465 XVNCAKDKLEAMKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEM 524
              +N  KD+L   + E  E   L+ +LKE+++  R+Q+  L  E + L+ ++  FE EWE 
Sbjct:   468 EINKEKDELRVTEEERSEYLRLQTELKEQIEKCRSQQELLQKEAEDLKAQRESFEKEWEE 527

Query:   525 IDXXXXXXXXXXXXXXXXXXXXXXXXKDERDSLRQERDAMRDQHKRDVDSLNREREEFMN 584
             +D                          E + L++E+ A  +  +R++++L   +  F  
Sbjct:   528 LDERKAKIGNELKNITDQKEKLERHIHLEEERLKKEKQAANENMERELETLEVAKASFAE 587

Query:   585 KMVHEHSEWFTKIQQERADFLLGIEMQKRDLENCIXXXXXXXXXXXXXXXXXXXXXXXXX 644
              M +E S    K + ER+  L  IEM+KR LE+ +                         
Sbjct:   588 TMEYERSMLSKKAESERSQLLHDIEMRKRKLESDMQTILEEKERELQAKKKLFEEEREKE 647

Query:   645 XQQISSXXXXXXXXXXQVTLEIKRLDLERMEINMDRQRRDREWAELNNSIEELM 698
                I+            +  E +R++ E++E++  +   + +  E+   +++L+
Sbjct:   648 LSNINYLRDVARREMMDMQNERQRIEKEKLEVDSSKNHLEEQQTEIRKDVDDLV 701

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006997 "nucleus organization" evidence=IGI;IMP

GO:0005829 "cytosol" evidence=IDA

GO:0005652 "nuclear lamina" evidence=IDA

GO:0034399 "nuclear periphery" evidence=IDA

TAIR|locus:2012423 LINC3 "LITTLE NUCLEI3" [Arabidopsis thaliana (taxid:3702)]

 Score = 631 (227.2 bits), Expect = 9.0e-59, Sum P(2) = 9.0e-59
 Identities = 165/579 (28%), Positives = 285/579 (49%)

Query:     6 SGRLAITPSSRVLQSPLSDESIWKRLKEAGL-DEVSIKRRDKAALIAYIAKLETEIFEHQ 64
             S  +   P  RVL   L ++  W++ KE GL DE S++R+D+ ALI  I KLE E+F++Q
Sbjct:    22 SDEIITPPPQRVL---LREDDDWQKFKEVGLLDEASLERKDRDALIEKILKLEKELFDYQ 78

Query:    65 HHMGLLILEKKELASKYEQIK-ASAEAAELLQKHDRASHLSAIAEARKREESLKKTLGVE 123
             H+MGLL++EKK+  S   +++ A  EA E+L K ++ S+   + EA KREE+L+K L  E
Sbjct:    79 HNMGLLLIEKKQWTSTNNELQQAYDEAMEML-KREKTSNAITLNEADKREENLRKALIDE 137

Query:   124 KECIASLEKAVHEIRAESAETKVAADSKFAEARCMVENAQKKFAEAEAKLHAAESLQAEA 183
             K+ +A LE  +   + E +  K  +++K  EA  +V   ++K  E + +   AE   +  
Sbjct:   138 KQFVAELENDLKYWQREHSVVKSTSEAKLEEANALVIGMKEKALEVDRERAIAEEKFSVM 197

Query:   184 NRYHRSAERKLQEVVAREDDLSRRIASFKADCXXXXXXXXXXXQSLSDRKKILQQEHERL 243
             NR     ERKL+EV  RE    R   S   +            + L + +K L  E +RL
Sbjct:   198 NRKSSELERKLKEVETREKVHQREHLSLVTEREAHEAVFYKQREDLQEWEKKLTLEEDRL 257

Query:   244 LDAQTLLNEREDHILSKLQELSRKEKELEASRANVEEKFKALNEEKSNLDLTLVSLLKRE 303
              + +  +N RE+ ++   + + +KEK LE  +  +      L E++ ++ + L  +  +E
Sbjct:   258 SEVKRSINHREERVMENERTIEKKEKILENLQQKISVAKSELTEKEESIKIKLNDISLKE 317

Query:   304 EAVIEREASLQKKEQKLLVSQETLASKESNEIQKIIANHESALRVKQSEFEAELAIKYKL 363
             +     +A +  KE++L   +E L  +E  EI K++ + ++ L  ++ EFE EL    + 
Sbjct:   318 KDFEAMKAKVDIKEKELHEFEENLIEREQMEIGKLLDDQKAVLDSRRREFEMELEQMRRS 377

Query:   364 AEDEIEKKRRAWELRDLDLGQREESLLEREHDLEVQSRALVDKEKDLVERSHLLEEKENK 423
              ++E+E K+   E   +++  +EE L +RE  LE +   +  KEKDL  R   ++EKE  
Sbjct:   378 LDEELEGKKAEIEQLQVEISHKEEKLAKREAALEKKEEGVKKKEKDLDARLKTVKEKEKA 437

Query:   424 LIAFEKEADXXXXXXXXXXXXVNIIXXXXXXXXXXXXXXXXXVNCAKDKLEAMKSEAGEL 483
             L A EK+              +  +                 +    + L   K E  E 
Sbjct:   438 LKAEEKKLHMENERLLEDKECLRKLKDEIEEIGTETTKQESRIREEHESLRITKEERVEF 497

Query:   484 SVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDXXXXXXXXXXXXXXXXX 543
               L+ +LK+++D V+ ++  L+ E ++L+ +K +FE EWE +D                 
Sbjct:   498 LRLQSELKQQIDKVKQEEELLLKEREELKQDKERFEKEWEALDKKRANITREQNEVAEEN 557

Query:   544 XXXXXXXKDERDSLRQERDAMRDQHKRDVDSLNREREEF 582
                      E+  L++E    RD  KR++D +  ++E F
Sbjct:   558 EKLRNLQISEKHRLKREEMTSRDNLKRELDGVKMQKESF 596

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005730 "nucleolus" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0000226 "microtubule cytoskeleton organization" evidence=RCA

GO:0000911 "cytokinesis by cell plate formation" evidence=RCA

GO:0005654 "nucleoplasm" evidence=IDA

GENEDB_PFALCIPARUM|PF11_0486 PF11_0486 "MAEBL, putative" [Plasmodium falciparum (taxid:5833)]

 Score = 235 (87.8 bits), Expect = 2.7e-14, Sum P(3) = 2.7e-14
 Identities = 107/385 (27%), Positives = 184/385 (47%)

Query:    73 EKK---ELASKYEQIKASAEAAELLQKHDRASHLSAIAEARKREESLKKTLGVEKECIAS 129
             EKK   EL  K E+ K + E  +  ++  +A  L   AE +K+ + LKK    EK+   +
Sbjct:  1384 EKKKADELKKKAEEKKKADELKKKAEEKKKADELKKKAEEKKKADELKKK-AEEKKKAEN 1442

Query:   130 LEKAVHEIRAES----AETKVAADS--KFAEARCMVENAQKKFAEAEAKLHAAESLQAEA 183
             L+KA  + +A+     AE K  AD   K AE +   +  +KK   AE K  A E  +AE 
Sbjct:  1443 LKKAEEKKKADELKKKAEEKKKADELKKKAEEKKKADELKKK---AEEKKKADELKKAEE 1499

Query:   184 NRYHRSAERKLQEVVAREDDLSRRIASFKADCXXXXXXXXXXXQSLSDRKKILQQ--EHE 241
              +  ++ E K  E   + D+L +     KAD            +   ++KK+ Q+  E E
Sbjct:  1500 KK--KADELKKAEEKKKADELKKAEEKKKAD----ELKKAEELKKAEEKKKVEQKKREEE 1553

Query:   242 R---LLDAQTLLNEREDHILSKLQELSRKEKELEAS--RANVEEKFKALNEEKSNLDLTL 296
             R    L    +L + E   + ++ +L  +EK+++A   +   EEK KA   +K   +   
Sbjct:  1554 RRNMALRRAEILKQIEKKRIEEVMKLYEEEKKMKAEQLKKEEEEKIKAEQLKKEEEEKKK 1613

Query:   297 VSLLKREEAVIEREAS-LQKKEQKLLVSQETLASKESNEIQKI--IANHESALRVKQSEF 353
             V  LK++E   +++A  L+K+E++  +  E L  KE  E +K   +   E   + K  + 
Sbjct:  1614 VEQLKKKEEEEKKKAEQLKKEEEENKIKAEQLKKKEEEEKKKAEELKKEEEEEKKKAEQL 1673

Query:   354 EAELAIKYK---LAEDEIEKKRRAWELRDLDLGQR--EESLLEREHDLEVQSRALV--DK 406
             + E   K K   L + E E+K++A +L+  +   +   E L + E + + ++  L   ++
Sbjct:  1674 KKEEEEKKKVEQLKKKEEEEKKKAEQLKKEEEENKIKVEQLKKEEEEEKKKAEELKKEEE 1733

Query:   407 EKDLVERSHLLEEKENKLIAFEKEA 431
             EK  V++    EEK+ + I  EKEA
Sbjct:  1734 EKKKVQQLKKEEEKKAEEIRKEKEA 1758

GO:0016020 "membrane" evidence=ISS

GO:0008150 "biological_process" evidence=ND

GO:0020007 "apical complex" evidence=TAS

UNIPROTKB|Q8IHP3 PF11_0486 "MAEBL, putative" [Plasmodium falciparum 3D7 (taxid:36329)]

 Score = 235 (87.8 bits), Expect = 2.7e-14, Sum P(3) = 2.7e-14
 Identities = 107/385 (27%), Positives = 184/385 (47%)

Query:    73 EKK---ELASKYEQIKASAEAAELLQKHDRASHLSAIAEARKREESLKKTLGVEKECIAS 129
             EKK   EL  K E+ K + E  +  ++  +A  L   AE +K+ + LKK    EK+   +
Sbjct:  1384 EKKKADELKKKAEEKKKADELKKKAEEKKKADELKKKAEEKKKADELKKK-AEEKKKAEN 1442

Query:   130 LEKAVHEIRAES----AETKVAADS--KFAEARCMVENAQKKFAEAEAKLHAAESLQAEA 183
             L+KA  + +A+     AE K  AD   K AE +   +  +KK   AE K  A E  +AE 
Sbjct:  1443 LKKAEEKKKADELKKKAEEKKKADELKKKAEEKKKADELKKK---AEEKKKADELKKAEE 1499

Query:   184 NRYHRSAERKLQEVVAREDDLSRRIASFKADCXXXXXXXXXXXQSLSDRKKILQQ--EHE 241
              +  ++ E K  E   + D+L +     KAD            +   ++KK+ Q+  E E
Sbjct:  1500 KK--KADELKKAEEKKKADELKKAEEKKKAD----ELKKAEELKKAEEKKKVEQKKREEE 1553

Query:   242 R---LLDAQTLLNEREDHILSKLQELSRKEKELEAS--RANVEEKFKALNEEKSNLDLTL 296
             R    L    +L + E   + ++ +L  +EK+++A   +   EEK KA   +K   +   
Sbjct:  1554 RRNMALRRAEILKQIEKKRIEEVMKLYEEEKKMKAEQLKKEEEEKIKAEQLKKEEEEKKK 1613

Query:   297 VSLLKREEAVIEREAS-LQKKEQKLLVSQETLASKESNEIQKI--IANHESALRVKQSEF 353
             V  LK++E   +++A  L+K+E++  +  E L  KE  E +K   +   E   + K  + 
Sbjct:  1614 VEQLKKKEEEEKKKAEQLKKEEEENKIKAEQLKKKEEEEKKKAEELKKEEEEEKKKAEQL 1673

Query:   354 EAELAIKYK---LAEDEIEKKRRAWELRDLDLGQR--EESLLEREHDLEVQSRALV--DK 406
             + E   K K   L + E E+K++A +L+  +   +   E L + E + + ++  L   ++
Sbjct:  1674 KKEEEEKKKVEQLKKKEEEEKKKAEQLKKEEEENKIKVEQLKKEEEEEKKKAEELKKEEE 1733

Query:   407 EKDLVERSHLLEEKENKLIAFEKEA 431
             EK  V++    EEK+ + I  EKEA
Sbjct:  1734 EKKKVQQLKKEEEKKAEEIRKEKEA 1758

GO:0008150 "biological_process" evidence=ND

GO:0020007 "apical complex" evidence=TAS

ZFIN|ZDB-GENE-050208-317 tnks1bp1 "tankyrase 1 binding protein 1" [Danio rerio (taxid:7955)]

 Score = 213 (80.0 bits), Expect = 8.2e-17, Sum P(3) = 8.2e-17
 Identities = 91/381 (23%), Positives = 165/381 (43%)

Query:    73 EKKELASKYEQIKASAEAAELLQKHDRASHLSAIAEARKREESLKKTLGVEK-ECIASLE 131
             EK++   + E+ +   E  E  +K         I E RK+EE LK+ +  E+ +    +E
Sbjct:   370 EKQKKDEQLEKERKQREEEE--EKKQEVERQRQIEETRKQEEELKRKMEEERRQAEKEIE 427

Query:   132 KAVHEIRAESAETKVAADSKFAEARCMVENAQKKFAEAEAKLHAAESLQAEANRYHRSA- 190
             +   E RA   + +   + +    +      Q+K      +    E L+ E     R   
Sbjct:   428 RQKEEERARMEKQQKERELEEKRRKIQEMERQRKEERQRQEREKEERLKKEREMEERKRI 487

Query:   191 --ERKLQEVVAREDDLSRRIASFKADCXXXXXXXXXXXQSLSDRKKILQQEHERLLDAQT 248
               ER  QE   R++    R+   K              Q   +R++  ++E ER+   + 
Sbjct:   488 EEERLRQEERLRQEREKERVKKEKEMEEERQRVQELERQKEEERRRKEEEEMERIRKEKE 547

Query:   249 LLNER----------EDHILSKLQELSR--KEKELEASRANVEEKFKALNEEKSNLDLTL 296
             +  ER          E+  L K QE+ R  KEKE+E  R  ++E  + + EE+   +  +
Sbjct:   548 IEEERRRIQELERQMEEERLRKEQEMERIRKEKEMEEERRRIQELERQMEEERLRKEQEM 607

Query:   297 VSLLKREEAVIER----EASLQKKEQKLLVSQETLASKESNEIQKIIANHESALRVKQSE 352
               + K +E   ER    E   QK+E +L   +E    K+  E+++     +   R K+ E
Sbjct:   608 ERIRKEKEMEEERRRIQELERQKEEDRLRKEREIARLKKEKEMEEERRRIQELERQKEEE 667

Query:   353 -FEAELAIKYKLAEDEIEKKRRAWELRDLDLGQREESLLEREHDLEVQSRALVDKEKDLV 411
                 E  I+    E EIE+KR+   +++L+  Q+EE  L +E ++E + R   + E++ +
Sbjct:   668 RLRKEQEIERIKKEKEIEEKRQ--RIQELER-QKEEERLRKEREME-RIRKEKEIEEERL 723

Query:   412 ERSHLLEEKENKLIAFEKEAD 432
                 L  +KE + +  E+E +
Sbjct:   724 RIQELERQKEEERLRKEQEME 744

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

ZFIN|ZDB-GENE-060503-506 si:ch211-250g4.3 "si:ch211-250g4.3" [Danio rerio (taxid:7955)]

 Score = 185 (70.2 bits), Expect = 6.9e-15, Sum P(2) = 6.9e-15
 Identities = 125/604 (20%), Positives = 240/604 (39%)

Query:    32 KEAGLDEVSIKRRDKAALIAYIAKLETEIFEHQHHMGLLIL-------EKKELASKYEQI 84
             +E+   E+    + K+A+   I ++E +I E Q    L+         EK EL  K E I
Sbjct:   264 RESTKHEMERMEQMKSAIQVQINEIEMKIGETQKAKDLMEQMKAEIEDEKNELEKKKEDI 323

Query:    85 KASAEAAELLQKHDRASHLSAIAEARKRE---ESLKKTLGV--EKECIASLEKAVHEIRA 139
             K   +  E + K D    +    E R  E   E L++   +  EKE +  L+  +  +R 
Sbjct:   324 KRQRDQFEQI-KLD-LQQVKMEMEQRWHETEKEGLEQRAVIQREKEQLKYLQDEIQRVRE 381

Query:   140 ESAETKVAADSKFAEARCMVENAQKKFAEAEAKLHAAESLQAEANRYHRSAERKLQEVVA 199
             E    +  +  + A    +   A ++    E K H     + +        ER  +E+V 
Sbjct:   382 EVERNREFSKQEHARISQLRAQALEENNLIENKWHDILRKEKDLEEMKHEIERGREELVM 441

Query:   200 REDDLSR---RIASFKADCXXXXXXXXXXXQSLSDRKKILQQEHERLLDAQTLLNEREDH 256
               + + +   +I   K D             S+  R   +++E ERL   +T + +R+  
Sbjct:   442 NGELVKKEWEKIEQAKVDIQSHMI-------SMEGRVDEIKRETERLKHIKTEM-QRDKD 493

Query:   257 ILSKLQELSRKEKELEASRANVE---EKFK---ALNEEKSNLDLTLVSLLKREEAVIERE 310
              L K ++ +RK KE EA R   E   E+ +    L  E+  L+     + +  +  +E+ 
Sbjct:   494 ALEKQKDDTRKAKE-EAERKRYEIVTEELEHRARLQRERDELENIRAEMQRVND--VEKA 550

Query:   311 ASLQKKEQKLLVSQETLASKESNEIQKI-IANHESALRVKQSEFEAELAIKYKLAEDEIE 369
               L++KE+ + + +E    +E+ E+    I   +  L  +Q E   E     ++  + + 
Sbjct:   551 KILKEKEESIRIREEARQERETTELVNAEIKAEKERLNQRQEEMLRERQEIERIKHETLR 610

Query:   370 KKRRAWELRDLDLGQREESLLEREHDLEVQSRALVDKEKDLVERSHLLEEKENKLIAFEK 429
              K      +D+ +  RE   +E+    E+Q + + D EK + E     E+ E   +  E+
Sbjct:   611 AKEEIENSQDVTI--REYEKMEKMK-AEIQGQ-IEDIEKKVEEIQKTKEQMEEAKVELEE 666

Query:   430 EADXXXXXXXXXXXXVNIIXXXXXXXXXXXXXXXXXVNCAKDKLEAMKSEAGELSVLEIK 489
             E +            +                    +   K+++E+   E  E   +E++
Sbjct:   667 EREDLERKRDLVSREIE-----------QAEFLRNEILRVKEEMESRWRET-ETEEVELR 714

Query:   490 LKEELDVVRAQKLELMVETDKLQLEKAKFEAE-W-EMIDXXXXXXXXXXXXXXXXXXXXX 547
              K + ++ R +KL    E  +  +E++K E   W E +D                     
Sbjct:   715 AKTQHELERLEKLREETERSQKNIEESKIELMLWKESLDKLKGEMEEDKHVVIMQMNEAK 774

Query:   548 XXXKDER-----DSLRQERDAM---RDQHKRDVDSLNREREEFMNKMVHEHSEWFTKIQQ 599
                K+E+     + L  ER  +   R++ K ++D +NR R E   +   E  +WF  + +
Sbjct:   775 A--KEEQLTMVIEQLEIERGEITISREKVKEELDEINRMRNELQRQHA-EMEDWFRVVNK 831

Query:   600 ERAD 603
             E+ +
Sbjct:   832 EKEE 835

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

DICTYBASE|DDB_G0288069 DDB_G0288069 [Dictyostelium discoideum (taxid:44689)]

 Score = 187 (70.9 bits), Expect = 2.5e-14, Sum P(2) = 2.5e-14
 Identities = 105/427 (24%), Positives = 188/427 (44%)

Query:    12 TPSSRVLQSPLSDESIWKRLKEAGLDEVSIKRR--DKAALIAYIAKLETEIFEHQHHMGL 69
             T SS   +    D+   K+ K+   + ++ K+R  D+   IA   K + E  + +     
Sbjct:   476 TLSSENSKKQKEDDEKEKQRKQQE-EAIAEKKRLEDEEKRIANEKKKQEEEKKRKEEEKR 534

Query:    70 LILEKKELASKYEQIKASAEAAELLQKHDRASHLSAIAEARKREESLKKTLGVEKECIAS 129
             + LEKK+   + ++I     A E  ++ D    ++   E +++EE  K+   +E E    
Sbjct:   535 IALEKKKQEDEEKRI-----ALEKKKQEDEDKRIAM--EKKRKEEKEKEEKRIEMERQRK 587

Query:   130 LEKAVHEIRAESAETKVAADSKFAEARCMVENAQKKFAEAEAKLH-AAESLQAEANRYHR 188
             LE+   E   +  E +  A  +  E R   E  QK+ A+ E K     E L  E     +
Sbjct:   588 LEEEKKEQEKKKLEQEREAKLE-NERRLREEKKQKERADREEKERLTVERLAKERELVQQ 646

Query:   189 SAERKLQEVVAR-EDDLSRRIASFKADCXXXXXXXXXXXQSLSDRKKILQQEHERLLDAQ 247
               E K ++++ + + D   ++   K +            +   ++ +  + E+ERL + +
Sbjct:   647 ERELKEKQLLDKIKKDKQEKLEKEKLEKERLENEKLENERLGKEKLEKEKLENERL-ENE 705

Query:   248 TLLNER--EDHILSKLQELSRKEKE-LEASRANVEEKFKALNEEKSNLDLTLVSLLKREE 304
              L NER   + + ++  E  R EKE LE  R    EK +    EK  L+   +   + EE
Sbjct:   706 RLENERLENERLENERLENERLEKERLEKERLENGEKLEKEKLEKEKLEKEELENKRNEE 765

Query:   305 AVIEREASLQK-KEQKLLVSQETLASKESNEIQKIIANHESALRVKQSEFEAELAIKY-K 362
              ++ ++   QK KE+K    ++    KE  E +K     E     KQ   E E A K  K
Sbjct:   766 ELLLKQQQQQKEKEEK---EEKEKEEKEKEEKEKEEKEKERIELEKQKAEEEEEAEKLRK 822

Query:   363 LAEDEIEKKRRAWELRDLDLG-QREESLLEREHDLEVQSRALVDKEKDLVER-----SHL 416
             L E E E+K     +RD       E+  +E+E+ +E + + + ++EK+ +E+       L
Sbjct:   823 LKEQEEEQKLELKRIRDEQKKIDDEKERIEKEN-IEKEKQRIENQEKERLEKLQQEQQRL 881

Query:   417 LEEKENK 423
              +E+E K
Sbjct:   882 FDEQEKK 888

GO:0005615 "extracellular space" evidence=IDA

GO:0003950 "NAD+ ADP-ribosyltransferase activity" evidence=IEA

UNIPROTKB|G1K307 MYH11 "Myosin-11" [Gallus gallus (taxid:9031)]

 Score = 184 (69.8 bits), Expect = 3.2e-14, Sum P(2) = 3.2e-14
 Identities = 130/592 (21%), Positives = 242/592 (40%)

Query:    34 AGLDEVSIK-RRDKAALIAYIAKLETEIFEHQHHMGLLILEKKELASKYEQIKASAEAAE 92
             A  +E+ ++    K  L   + ++E  I E +     L  EKK++  +   ++   E  E
Sbjct:   903 AEAEEMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEE 962

Query:    93 LLQKHDRASHLSAIAEARKREESLKKTLGVEKECIASLEKAVHEIRAESAETKVAADSKF 152
               ++  +   ++A  + +K E+ +   +  ++    + E+ + E R     T +A + + 
Sbjct:   963 AARQKLQLEKVTADGKIKKMEDDI--LIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEK 1020

Query:   153 AEARCMVENAQKKF-AEAEAKLHAAESLQAEANRYHRSAERKLQEVVAREDDLSRRIASF 211
             A+    ++N  +   +E E +L   E  + E  +     +RKL+       DL  +IA  
Sbjct:  1021 AKNLTKLKNKHESMISELEVRLKKEEKSRQELEKI----KRKLE---GESSDLHEQIAEL 1073

Query:   212 KADCXXXXXXXXXXXQSLSDRKKILQQEHERLLDAQTLLNEREDHILSKLQELSRKEKEL 271
             +A             + L      L+ E  +  +A   + E E HI S LQE    EK  
Sbjct:  1074 QAQIAELKAQLAKKEEELQAALARLEDETSQKNNALKKIRELESHI-SDLQEDLESEK-- 1130

Query:   272 EASRANVEEKFKALNEE----KSNLDLTLVSLLKREEAVIEREASLQKKEQKLLVSQETL 327
              A+R   E++ + L+EE    K+ L+ TL +   ++E   +RE  +   ++ L   +ET 
Sbjct:  1131 -AARNKAEKQKRDLSEELEALKTELEDTLDTTATQQELRAKREQEVTVLKRAL--EEET- 1186

Query:   328 ASKESNEIQKIIANHESALRVKQSEFEAELAIKYKL--AEDEIEKKRR--AWELRDLDLG 383
              + E+ ++Q++   H  A+     + E     K  L   +  +EK     A E+R L   
Sbjct:  1187 RTHEA-QVQEMRQKHTQAVEELTEQLEQFKRAKANLDKTKQTLEKDNADLANEIRSLS-- 1243

Query:   384 QREESLLEREHDLEVQSRALVDKEKDLVERSHL-LEEKENKLIAFEKEADXXXXXXXXXX 442
             Q ++ +  ++  LEVQ + L  K  D  ER    L EK +KL   E E +          
Sbjct:  1244 QAKQDVEHKKKKLEVQLQDLQSKYSD-GERVRTELNEKVHKL-QIEVE-NVTSLLNEAES 1300

Query:   443 XXVNIIXXXXXXXXXXXXXXXXXVNCAKDKLEAMKSEAGELSVLEIKLKEELD--VVRAQ 500
               + +                      + KL  + ++  +L   +  L+E+LD  V   Q
Sbjct:  1301 KNIKLTKDVATLGSQLQDTQELLQEETRQKLN-VTTKLRQLEDDKNSLQEQLDEEVEAKQ 1359

Query:   501 KLELMVETDKLQLEKAK-----FEAEWE-MIDXXXXXXXXXXXXXXXXXXXXXXXXKDER 554
              LE  + T  +QL  +K     F A  E M +                        K E+
Sbjct:  1360 NLERHISTLTIQLSDSKKKLQEFTATVETMEEGKKKLQREIESLTQQFEEKAASYDKLEK 1419

Query:   555 --DSLRQERDAM---RDQHKRDVDSLNREREEFMNKMVHEHSEWFTKIQQER 601
               + L+QE D +    D  ++ V +L +++++F ++M+ E     +K   ER
Sbjct:  1420 TKNRLQQELDDLVVDLDNQRQLVSNLEKKQKKF-DQMLAEEKNISSKYADER 1470

GO:0003774 "motor activity" evidence=IEA

GO:0003779 "actin binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0016459 "myosin complex" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9FLH0	NMCP_ARATH	No assigned EC number	0.5119	0.8762	0.9040	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00010658001 SubName- Full=Chromosome chr7 scaffold_275, whole genome shotgun sequence; (1056 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	1075
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	3e-12
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	3e-12
COG0419	908	COG0419, SbcC, ATPase involved in DNA repair [DNA	3e-11
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	5e-11
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	7e-11
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	9e-11
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	1e-10
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	1e-10
COG0419	908	COG0419, SbcC, ATPase involved in DNA repair [DNA	2e-10
PRK03918	880	PRK03918, PRK03918, chromosome segregation protein	3e-10
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	4e-10
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	3e-09
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	3e-09
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	6e-09
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	6e-09
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	9e-09
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	1e-08
COG0419	908	COG0419, SbcC, ATPase involved in DNA repair [DNA	1e-08
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	1e-08
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	3e-08
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	6e-08
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	7e-08
PRK02224	880	PRK02224, PRK02224, chromosome segregation protein	2e-07
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	4e-07
PRK12704	520	PRK12704, PRK12704, phosphodiesterase; Provisional	5e-07
pfam12128	1198	pfam12128, DUF3584, Protein of unknown function (D	5e-07
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	9e-07
pfam02463	1162	pfam02463, SMC_N, RecF/RecN/SMC N terminal domain	1e-06
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	2e-06
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	2e-06
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	2e-06
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	3e-06
COG0419	908	COG0419, SbcC, ATPase involved in DNA repair [DNA	3e-06
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	3e-06
PRK02224	880	PRK02224, PRK02224, chromosome segregation protein	4e-06
pfam02463	1162	pfam02463, SMC_N, RecF/RecN/SMC N terminal domain	4e-06
pfam12128	1198	pfam12128, DUF3584, Protein of unknown function (D	5e-06
PRK03918	880	PRK03918, PRK03918, chromosome segregation protein	1e-05
PRK12704	520	PRK12704, PRK12704, phosphodiesterase; Provisional	2e-05
TIGR03319	514	TIGR03319, RNase_Y, ribonuclease Y	2e-05
pfam02463	1162	pfam02463, SMC_N, RecF/RecN/SMC N terminal domain	4e-05
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	5e-05
pfam02463	1162	pfam02463, SMC_N, RecF/RecN/SMC N terminal domain	6e-05
PRK02224	880	PRK02224, PRK02224, chromosome segregation protein	7e-05
pfam05557	722	pfam05557, MAD, Mitotic checkpoint protein	7e-05
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	8e-05
PRK05771	646	PRK05771, PRK05771, V-type ATP synthase subunit I;	8e-05
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	1e-04
PRK02224	880	PRK02224, PRK02224, chromosome segregation protein	3e-04
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	4e-04
COG4942	420	COG4942, COG4942, Membrane-bound metallopeptidase	6e-04
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	8e-04
TIGR00618	1042	TIGR00618, sbcc, exonuclease SbcC	8e-04
COG4717	984	COG4717, COG4717, Uncharacterized conserved protei	9e-04
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	0.001
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	0.001
COG1269	660	COG1269, NtpI, Archaeal/vacuolar-type H+-ATPase su	0.001
PRK00409	782	PRK00409, PRK00409, recombination and DNA strand e	0.001
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	0.002
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	0.002
pfam01496	707	pfam01496, V_ATPase_I, V-type ATPase 116kDa subuni	0.003
COG1269	660	COG1269, NtpI, Archaeal/vacuolar-type H+-ATPase su	0.004
pfam05622	713	pfam05622, HOOK, HOOK protein	0.004

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 70.9 bits (173), Expect = 3e-12
 Identities = 153/683 (22%), Positives = 296/683 (43%), Gaps = 49/683 (7%)

Query: 29   KRLKEAGLDEVSIKRRDKAALIAYIAKLETEIFEHQHHMGLLILEKKELASKYEQIKAS- 87
            K+ +EA  D    K+ ++      I K E     H       I  K E A K +++K + 
Sbjct: 1230 KKAEEAKKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAI--KAEEARKADELKKAE 1287

Query: 88   ----AEAAELLQKHDRASHLSAIAEARKREESLKKTLGVEKECIASLEKAVHEIR--AES 141
                A+ A+  ++  +A      AE  K+ +  KK     K+   + +K   E +  AE+
Sbjct: 1288 EKKKADEAKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEA 1347

Query: 142  AETKVAADSKFAEARCMVENAQKKFAEAEAKLHAAESLQAEANRYHRSAERKLQEVVARE 201
            A+ +  A +  AEA      A +K  E   K   A   +AE  +    A++K +E   + 
Sbjct: 1348 AKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKA 1407

Query: 202  DDLSRRIASFK-ADCEEKEREIIRERQSLSDRKKILQQEHERLLDAQTLLNEREDHILSK 260
            D+L +  A+ K AD  +K+ E  ++      + +  ++  E    A+     ++     K
Sbjct: 1408 DELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAE---EAKKAEEAKK 1464

Query: 261  LQELSRKEKELEA---SRANVEEKFKALNEEKSNLDLTLVSLLKREEAVIEREASLQKKE 317
              E ++K  E +         +E  K   E K   D    +   +++A   ++A   KK 
Sbjct: 1465 KAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKA 1524

Query: 318  QKLLVSQETLASKESNEIQKIIANHE--SALRVKQSEFEAELAIKYKLAEDEIEKKRRAW 375
             +   ++E   + E+ + ++     E   A  +K++E + +     K  ED+    R+A 
Sbjct: 1525 DEAKKAEEAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAE 1584

Query: 376  ELRDLDLGQREESLLEREHDLEVQSRALVDKEKDLVERSHLLEEKENK----LIAFEKEA 431
            E +  +  + EE +   E + ++++      E+  ++   L + +E K     +  ++  
Sbjct: 1585 EAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAE 1644

Query: 432  DLKKSLLQKEKEEVNIIKSDLQKSLSSLDEKK-----KQVNCAKDKLEAMKSEAGEL-SV 485
            + KK+   K+ EE N IK+  +   +  D+KK     K     K   EA+K EA E    
Sbjct: 1645 EKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKA 1704

Query: 486  LEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVERVV 545
             E+K KE  +  +A++L+   E +K++ E+AK EAE +   +K EE +K+ E    E+  
Sbjct: 1705 EELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEED--KKKAEEAKKDEE----EKKK 1758

Query: 546  VSKSLKDERDSLRQERDAMRDQHKRDVDSLNREREEFMNKMVHEHSEWFTKIQQERADFL 605
            ++   K+E     + R       + ++D  + +R   ++K + +  + F  I +   +  
Sbjct: 1759 IAHLKKEEEKKAEEIRKEKEAVIEEELDEEDEKRRMEVDKKIKDIFDNFANIIEGGKEGN 1818

Query: 606  LGIEMQKRDLENCIEKRREELESSFREREKAFEEEKMR-------------EFQQISSLK 652
            L I   K ++E+   K   + ++   E   AFE+ K               +F +   LK
Sbjct: 1819 LVINDSK-EMEDSAIKEVADSKNMQLEEADAFEKHKFNKNNENGEDGNKEADFNKEKDLK 1877

Query: 653  EKAEKELEQVTLEIKRLDLERME 675
            E  E+E+E+   EI+++D + +E
Sbjct: 1878 EDDEEEIEE-ADEIEKIDKDDIE 1899

Length = 2084

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 70.9 bits (174), Expect = 3e-12
 Identities = 135/697 (19%), Positives = 297/697 (42%), Gaps = 40/697 (5%)

Query: 38  EVSIKRRDKAALIAYIAKLETEIFEHQHHMGLLILEKKELASKYEQIKASAEAAEL---L 94
           E+S    +   L   + + E EI E +  +  L  E +EL  +  ++K   E  E    L
Sbjct: 247 ELSRLEEELEELQEELEEAEKEIEELKSELEELREELEELQEELLELKEEIEELEGEISL 306

Query: 95  QKHDRASHLSAIAEARKREESLKKTLGVEKECIASLEKAVHEIRAESAETKVAADSKFAE 154
            +       + + E  +R E LK+ +   KE +   E  + E+    AE + A +    +
Sbjct: 307 LRERLEELENELEELEERLEELKEKIEALKEELEERETLLEELEQLLAELEEAKEELEEK 366

Query: 155 ARCMVENAQKKFAEAEAKLHAAESLQAEANRYHRSAERKLQEVVAREDDLSRRIASFK-- 212
              ++E  ++ F     +L   E+  AE        +R+++ +  R + LS R+   K  
Sbjct: 367 LSALLEELEELFEALREELAELEAELAEIRNELEELKREIESLEERLERLSERLEDLKEE 426

Query: 213 -ADCEEKEREIIRERQSLSDRKKILQQEHERLLDAQTLLNEREDHILSKLQELSRKEKEL 271
             + E +  E+  E + L++  + L+++ E L D    L      +  +LQ L ++   L
Sbjct: 427 LKELEAELEELQTELEELNEELEELEEQLEELRDRLKELERELAELQEELQRLEKELSSL 486

Query: 272 EASRANVEEKFKALNEEKSNLDLTLVSLLKREEAVIEREASLQKKEQKLLVSQETLASKE 331
           EA      ++ +A       +   L +L      V    A L K ++K   + E      
Sbjct: 487 EA----RLDRLEAEQRASQGVRAVLEALESGLPGVYGPVAELIKVKEKYETALEAALGNR 542

Query: 332 SNEIQKIIANHESALRVKQSEFEAELAIKYKLAEDEIEKKRRAWELRDLDLGQREESLLE 391
              +  ++ N E A +  +   E +      L  D I+  R                L++
Sbjct: 543 LQAV--VVENEEVAKKAIEFLKENKAGRATFLPLDRIKPLRSLKSDAAPGFLGLASDLID 600

Query: 392 REHDLEVQSRALVDKEKDLVERSHLLEEKENKLIAFEKEADLKKSLLQKEKEEVNI--IK 449
            +   E   R ++           L+ +   +     ++  +K  ++  + + V      
Sbjct: 601 FDPKYEPAVRFVL--------GDTLVVDDLEQARRLARKLRIKYRIVTLDGDLVEPSGSI 652

Query: 450 SDLQKSLSSLDEKKKQVNCAKDKLEAMKSEAGELSVLEIKLKEELDVVRAQKLELMVETD 509
           +   ++  S   +K+++   +++L  ++++  +L      LK EL  +     EL  + +
Sbjct: 653 TGGSRNKRSSLAQKRELKELEEELAELEAQLEKLEEELKSLKNELRSLEDLLEELRRQLE 712

Query: 510 KLQLEKAKFEAEWEMIDEKREELRKEAERVAVERVVVSKSLKDERDSLRQERDAMRDQHK 569
           +L+ +  + + E   ++E+ E+L+   E +  E     + L++E + L++  + + ++ +
Sbjct: 713 ELERQLEELKRELAALEEELEQLQSRLEELEEEL----EELEEELEELQERLEELEEELE 768

Query: 570 RDVDSLNREREEFMNKMVHEHSEWFTKIQQERADFLLGIEMQKRDLENCIEKRREELESS 629
              ++L + +EE       E  E   +  QE    L  +E +  + E  ++    ELES 
Sbjct: 769 SLEEALAKLKEEI------EELEEKRQALQEE---LEELEEELEEAERRLDALERELESL 819

Query: 630 FREREKAFEEEKMREFQQISSLKEKAEKELEQVTLEIKRLDLERMEINMDRQRRDREWAE 689
            + RE+  +E +  E +      E+ E++L+++  E++ L+ E  E+  + +  + E  E
Sbjct: 820 EQRRERLEQEIEELEEE-----IEELEEKLDELEEELEELEKELEELKEELEELEAEKEE 874

Query: 690 LNNSIEELMVQRQKLEEQRQLLHADREEIQAESERLK 726
           L + ++EL  ++++LEE+ + L ++  E++ E E+L+
Sbjct: 875 LEDELKELEEEKEELEEELRELESELAELKEEIEKLR 911

Length = 1163

>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]

 Score = 67.5 bits (165), Expect = 3e-11
 Identities = 113/589 (19%), Positives = 230/589 (39%), Gaps = 56/589 (9%)

Query: 192 RKLQEVVAREDDLSRRIASFKADCEEKEREIIRERQSLSDRKKILQQEHERLLDAQTLLN 251
           ++ +  +   +     +     D  E   E ++E + L + ++  +QE E L      L 
Sbjct: 181 KEAKAKIEELEGQLSELLEDIEDLLEALEEELKELKKLEEIQE--EQEEEELEQEIEALE 238

Query: 252 EREDHILSKLQELSRKEKELEASRANVEEKFKALNEEKSNLDLTLVSLLKREEAV--IER 309
           ER   +  + + L   +  L    +   E  K   EE   L+  L  L ++ E +  +ER
Sbjct: 239 ERLAELEEEKERLEELKARLLEIESLELEALKIREEELRELERLLEELEEKIERLEELER 298

Query: 310 EASLQKKEQKLLVSQETLASKESNEIQKIIANHESALRVKQSEFEAELAIKYKLAEDEIE 369
           E    ++E + L +      +   +++ +    E                K +  E E+E
Sbjct: 299 EIEELEEELEGLRALLEELEELLEKLKSLEERLEKLEE------------KLEKLESELE 346

Query: 370 KKRRAWELRDLDLGQREESLLEREHDLEVQSRALVDKEKDLVERSHLLEEKENKLIAFEK 429
           +           L +R + L ER  +LE +    +++ K L E    L+E+  +L A  +
Sbjct: 347 ELAEEKNELAKLLEERLKELEERLEELEKELEKALERLKQLEEAIQELKEELAELSAALE 406

Query: 430 EADLKKSLLQKEKEEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEAMKSEAGELSVLEIK 489
           E   +   L+KE EE+     +L++ +  L+E+  Q+   +  +  +     +  V   +
Sbjct: 407 EIQEELEELEKELEELERELEELEEEIKKLEEQINQLESKELMIAELAGAGEKCPVCGQE 466

Query: 490 LKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVERVVVSKS 549
           L EE +    +  EL +E  + +L + K EAE   + E+ EEL KE              
Sbjct: 467 LPEEHEKELLELYELELEELEEELSREKEEAE---LREEIEELEKELRE----------- 512

Query: 550 LKDERDSLRQERDAMRDQHKRDVDSLNREREEFMNKMVHEHSEWFTKIQQERADFLLGIE 609
           L++E   L +  +A++++ +  ++ L    EE                  E     L ++
Sbjct: 513 LEEELIELLELEEALKEELEEKLEKLENLLEEL-----------------EELKEKLQLQ 555

Query: 610 MQKRDLENCIEKRREELESSFREREKAFEEEKMREFQQISSLKEKAEKELEQVTLEIKRL 669
             K +L    ++ +E  E     R     +E++ E ++     +K  KELE+   +++ L
Sbjct: 556 QLKEELRQLEDRLQELKELLEELRLLRTRKEELEELRERLKELKKKLKELEERLSQLEEL 615

Query: 670 DLERMEINMDRQRRDREWAELNNSIEELMVQRQKLEEQRQLLHADREEIQAESERLKKLE 729
                   +          EL  + EEL  + +KL  Q +L    +  ++   E++++LE
Sbjct: 616 --------LQSLELSEAENELEEAEEELESELEKLNLQAELEELLQAALEELEEKVEELE 667

Query: 730 DLKIAVDYMAVSEMQRSRLEHSQKKISAK-RHLNQQTSLAHADLGSDQK 777
                      +E Q        +++  +   L ++       LG  ++
Sbjct: 668 AEIRRELQRIENEEQLEEKLEELEQLEEELEQLREELEELLKKLGEIEQ 716

Length = 908

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 67.1 bits (163), Expect = 5e-11
 Identities = 133/688 (19%), Positives = 283/688 (41%), Gaps = 31/688 (4%)

Query: 99   RASHLSAIAEARKREESLKKTLGVEKECIASLEKAVHEIRAESAETKVAADSKFAEARCM 158
            + +      EARK EE+ KK     K       KA    +AE  E + A D+K  E    
Sbjct: 1104 KKTETGKAEEARKAEEAKKKAEDARK--AEEARKAEDARKAE--EARKAEDAKRVEIARK 1159

Query: 159  VENAQKKFAEAEAKLHAAESLQAEANRYHRSAERKLQEVVAREDDLSRRIASFKADCEEK 218
             E+A+K    AE    A ++ +AEA R  ++ E +  E + + +D  +  A+ KA+ E K
Sbjct: 1160 AEDARK----AEEARKAEDAKKAEAAR--KAEEVRKAEELRKAEDARKAEAARKAEEERK 1213

Query: 219  EREIIR-ERQSLSDRKKILQQEHERLLDAQTLLNEREDHILSKLQELSRKEKELEASRAN 277
              E  + E    ++  K  ++  +   +A+    ER +  + K +E          +   
Sbjct: 1214 AEEARKAEDAKKAEAVKKAEEAKKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIK 1273

Query: 278  VEEKFKALNEEKSNLDLTLVSLLKREEAVIEREASLQKKEQKLLVSQETLASKESNEIQK 337
             EE  KA   +K+          K EE   ++    +KK ++   + E     E  + + 
Sbjct: 1274 AEEARKADELKKAEEKKKADEAKKAEE--KKKADEAKKKAEEAKKADEAKKKAEEAKKKA 1331

Query: 338  IIANHESALRVKQSEFEAELAIKYKLAEDEIEKKRRAWELRDLDLGQREESLLEREHDLE 397
              A  ++    K +E     A       +  E+K  A E +  +  ++ ++  ++  + +
Sbjct: 1332 DAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKK 1391

Query: 398  VQSRALVDKEKDLVERSHLLEEKENKLIAFEKEADLKKSLLQKEKEEVNIIKSDLQKSLS 457
                A    E+D  +   L +    K    +K  + KK   +K+K +    K++  K   
Sbjct: 1392 KADEAKKKAEEDKKKADELKKAAAAK----KKADEAKKKAEEKKKADEAKKKAEEAKKAD 1447

Query: 458  SL----DEKKKQVNCAKDKLEAMKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQL 513
                  +E KK     K   EA K++  +    E K  +E    +A++ +   +  K   
Sbjct: 1448 EAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKK-KAEEAKKKADEAKKAA 1506

Query: 514  EKAKFEAEWEMIDEKR--EELRKEAERVAVERVVVSKSLKDERDSLRQERDAMRDQHKRD 571
            E  K   E +  +E +  +E +K  E    +    ++  K + D L++  +  + + K+ 
Sbjct: 1507 EAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKK-KADELKKAEELKKAEEKKK 1565

Query: 572  VDSLNREREEFMNKMVHEHSEWFTKIQQERADFLLGIEMQKRDLENCIEKRREELESSFR 631
             +   +  E+    M    +E   K ++ R + ++ +  +++ ++   E+ ++  E+  +
Sbjct: 1566 AEEAKKAEED--KNMALRKAEEAKKAEEARIEEVMKLYEEEKKMK--AEEAKKAEEAKIK 1621

Query: 632  EREKAFEEEKMREFQQISSLKEKAEKELEQVTLEIKRLDLERMEINMDRQRRDREWAELN 691
              E    EE+ ++ +Q+   + + +K+ E++    +   ++  E     +   ++  E  
Sbjct: 1622 AEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAK 1681

Query: 692  NSIEELMVQRQKLEEQRQLLHADREEIQAESERLKKLEDLKIA--VDYMAVSEMQRSRLE 749
             + E+     + L+++ +      E  + E+E  KK E+LK A   + +   E ++   E
Sbjct: 1682 KAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEE 1741

Query: 750  HSQKKISAKRHLNQQTSLAHADLGSDQK 777
              +K   AK+   ++  +AH     ++K
Sbjct: 1742 DKKKAEEAKKDEEEKKKIAHLKKEEEKK 1769

Length = 2084

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 66.2 bits (162), Expect = 7e-11
 Identities = 119/681 (17%), Positives = 258/681 (37%), Gaps = 62/681 (9%)

Query: 76  ELASKYEQIKASAEAAELLQKHDRASHLSAIAEARKRE---ESLKKTLGVEKECIASLEK 132
           EL ++   ++ S    E   +          AE  K     E L++ +  E++    L +
Sbjct: 298 ELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTE 357

Query: 133 AVHEIRAESAETKVAADSKFAEARCMVENAQKKFAEAEAKLHAAESLQAEANRYHRSAER 192
              E++ E  + +   +    E     +  +    + E        L+ E +R     +R
Sbjct: 358 EYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINELKRELDRLQEELQR 417

Query: 193 KLQEVVAREDDLSR---RIASFKADCEEKEREIIRERQSLSDRKKILQQEHERLLDAQTL 249
             +E+      ++    +I   + + E+K  EI ++   L      L +  + L D +  
Sbjct: 418 LSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEE 477

Query: 250 LNEREDHILSKLQELSRKEKELEASRANVEEKFKALNEEKSNLD--LTLVSLLKR--EEA 305
            +  E  +    +EL+  E +  AS   V          K+++      V+ L    E  
Sbjct: 478 YDRVEKELSKLQRELAEAEAQARASEERVRGGRAVEEVLKASIQGVHGTVAQLGSVGERY 537

Query: 306 VIEREASLQKKEQKLLVSQETLASKESNEIQK---------IIANHESALRVKQSEFEAE 356
               E +   +   ++V  + +A KE+ E+ K         +  N     R   S    +
Sbjct: 538 ATAIEVAAGNRLNNVVVEDDAVA-KEAIELLKRRKAGRATFLPLNKMRDERRDLSILSED 596

Query: 357 LAIKYKLAEDEIEKKRRA---WELRDLDLGQREESLLEREHDLEVQSRALVDKEKDLVER 413
             I + +   E + K      +   D  + +     +E    L  + R +V  E +L E+
Sbjct: 597 GVIGFAVDLVEFDPKYEPAFKYVFGDTLVVED----IEAARRLMGKYR-MVTLEGELFEK 651

Query: 414 SHLLEEKENKLIAFEKEADLKKSLLQKEKEEVNIIKSDLQKSLSSLDEKKKQVNCAKDKL 473
           S  +             +  + + LQ+ +E +  +K +L    S L   + +++    +L
Sbjct: 652 SGAMTGGSRAPRGGILFSRSEPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQEL 711

Query: 474 EAMKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELR 533
                + GE+     +L++E + ++ +  EL  +   L+ E    ++E + ++ + EEL 
Sbjct: 712 SDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELE 771

Query: 534 KEAERVAVERVVVSKSLKDERDSLRQERDAMRDQHKRDVDSLNREREEFMNKMVHEHSEW 593
           ++                       +  +A+ D   R   S   E +  ++K+  E S  
Sbjct: 772 EDLH---------------------KLEEALNDLEARLSHSRIPEIQAELSKLEEEVSRI 810

Query: 594 FTKIQQERADF--LLGIEMQKRDLENCIEKRREELESSFREREKAFEEEKMREFQQISSL 651
             ++++       L   +         ++++R +L+   +  EK  E    +        
Sbjct: 811 EARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGK-------- 862

Query: 652 KEKAEKELEQVTLEIKRLDLERMEINMDRQRRDREWAELNNSIEELMVQRQKLEEQRQLL 711
           KE+ E+ELE++   ++ L+    ++  +R   + +  EL   IEEL  Q +K  ++   L
Sbjct: 863 KEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQIEKKRKRLSEL 922

Query: 712 HADREEIQAESERLKKLEDLK 732
              + +++A  E L ++ED K
Sbjct: 923 ---KAKLEALEEELSEIEDPK 940

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 65.9 bits (161), Expect = 9e-11
 Identities = 71/340 (20%), Positives = 142/340 (41%), Gaps = 10/340 (2%)

Query: 411 VERSHLLEEKENKLIAFEKEADLKKSLLQKEK--EEVNIIKSDLQKSLSSLDEKKKQVNC 468
            ER  L+EE        E++ + ++ L + E+  E +  +  +L+K L  L+ + ++   
Sbjct: 155 EERRKLIEEAAGVSKYKERKEEAERKLERTEENLERLEDLLEELEKQLEKLERQAEKAER 214

Query: 469 AKDKLEAMKSEAGELSVLEIK-LKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDE 527
            ++    ++     L + ++K L++EL+ +  +   L  E ++LQ E  + E E E +  
Sbjct: 215 YQELKAELRELELALLLAKLKELRKELEELEEELSRLEEELEELQEELEEAEKEIEELKS 274

Query: 528 KREELRKEAERVAVERVVVSKSLKDERDSLRQERDAMRDQHKRDVDSLNREREEFMNKMV 587
           + EELR+E E +  E       LK+E + L  E   +R++ +      N   E       
Sbjct: 275 ELEELREELEELQEE----LLELKEEIEELEGEISLLRERLEE---LENELEELEERLEE 327

Query: 588 HEHSEWFTKIQQERADFLLGIEMQKRDLENCIEKRREELESSFREREKAFEEEKMREFQQ 647
            +      K + E  + LL    Q        ++  EE  S+  E  +   E    E  +
Sbjct: 328 LKEKIEALKEELEERETLLEELEQLLAELEEAKEELEEKLSALLEELEELFEALREELAE 387

Query: 648 ISSLKEKAEKELEQVTLEIKRLDLERMEINMDRQRRDREWAELNNSIEELMVQRQKLEEQ 707
           + +   +   ELE++  EI+ L+     ++   +    E  EL   +EEL  + ++L E+
Sbjct: 388 LEAELAEIRNELEELKREIESLEERLERLSERLEDLKEELKELEAELEELQTELEELNEE 447

Query: 708 RQLLHADREEIQAESERLKKLEDLKIAVDYMAVSEMQRSR 747
            + L    EE++   + L++              E+    
Sbjct: 448 LEELEEQLEELRDRLKELERELAELQEELQRLEKELSSLE 487

Length = 1163

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 65.5 bits (160), Expect = 1e-10
 Identities = 80/364 (21%), Positives = 164/364 (45%), Gaps = 19/364 (5%)

Query: 370  KKRRAWELRDLDLGQREESLLEREHDLEVQSRALVDKEKDLVERSHLLEEKENKLIAFEK 429
            + +R+   +  +L + EE L E E  LE     L   + +L     LLEE   +L   E+
Sbjct: 657  RNKRSSLAQKRELKELEEELAELEAQLEKLEEELKSLKNELRSLEDLLEELRRQLEELER 716

Query: 430  EADLKKSLLQKEKEEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEAMKSEAGELSVLEIK 489
            + +  K  L   +EE+  ++S L++    L+E ++++   +++LE ++ E   L     K
Sbjct: 717  QLEELKRELAALEEELEQLQSRLEELEEELEELEEELEELQERLEELEEELESLEEALAK 776

Query: 490  LKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVERVVVSKS 549
            LKEE++ +  ++  L  E ++L+ E  + E   + ++ + E L +  ER+  E     + 
Sbjct: 777  LKEEIEELEEKRQALQEELEELEEELEEAERRLDALERELESLEQRRERLEQE----IEE 832

Query: 550  LKDERDSLRQERDAMRDQHKRDVDSLNREREEF--MNKMVHEHSEWFTKIQQERADFLLG 607
            L++E + L ++ D + ++ +     L   +EE   +     E  +   ++++E+ +    
Sbjct: 833  LEEEIEELEEKLDELEEELEELEKELEELKEELEELEAEKEELEDELKELEEEKEELEEE 892

Query: 608  IEMQKRDLENC---IEKRREELESSFREREKAFEEEKMREFQQISSLKEKAEKELEQVTL 664
            +   + +L      IEK RE LE    + E+   E    E +     ++  E ELE+   
Sbjct: 893  LRELESELAELKEEIEKLRERLEELEAKLERLEVELPELEEELEEEYEDTLETELEREIE 952

Query: 665  EIKRLDLERMEINMDRQRRDREWAELNNSIEELMVQRQKLEEQRQLLHADREEIQAESER 724
             ++        +N+         A      EE+  + ++L+ QR+ L   +E++    E 
Sbjct: 953  RLEEEIEALGPVNLR--------AI--EEYEEVEERYEELKSQREDLEEAKEKLLEVIEE 1002

Query: 725  LKKL 728
            L K 
Sbjct: 1003 LDKE 1006

Length = 1163

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 65.5 bits (160), Expect = 1e-10
 Identities = 78/391 (19%), Positives = 166/391 (42%), Gaps = 47/391 (12%)

Query: 188  RSAERKLQEVVAREDDLSRRIASFKADCEEKEREIIRERQSLSDRKKILQQEHERLLDAQ 247
            RS   +LQ +  R + L R      +  + + R I      LS       ++   +    
Sbjct: 670  RSEPAELQRLRERLEGLKRE----LSSLQSELRRIENRLDELSQELSDASRKIGEIEKEI 725

Query: 248  TLLNEREDHILSKLQELSRKEKELEASRANVEEKFKALNEEKSNLDLTLVSLLKREEAVI 307
              L + E+ +  +L+EL      LE    NV+ + K L      L+  L  L        
Sbjct: 726  EQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKL-------- 777

Query: 308  EREASLQKKEQKLLVSQETLASKESNEIQKIIANHESALRVKQSEFEAELAIKYKLAEDE 367
              E +L   E +L  S+      E +++++ ++  E+ LR  + +       K +  E E
Sbjct: 778  --EEALNDLEARLSHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEK-EYLEKE 834

Query: 368  IEKKRRAWELRDLDLGQREESLLEREHDLEVQSRALVDKEKDLVERSHLLEEKENKLIAF 427
            I++ +     + +DL ++ +S+ +   +L  +   L ++ ++L      LE +   L   
Sbjct: 835  IQELQE----QRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKE 890

Query: 428  EKEADLKKSLLQKEKEEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEAMKSEAGELSVLE 487
              E + +   L+++ EE+             +++K+K+++  K KLEA++ E  E+   +
Sbjct: 891  RDELEAQLRELERKIEELEA----------QIEKKRKRLSELKAKLEALEEELSEIEDPK 940

Query: 488  IKLKEE------LDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAV 541
             + +E       L+ V+A+   +  E   L+        E+E + ++ +EL+++  +   
Sbjct: 941  GEDEEIPEEELSLEDVQAELQRVEEEIRALEPVNMLAIQEYEEVLKRLDELKEKRAK--- 997

Query: 542  ERVVVSKSLKDERDSLRQERDAMRDQHKRDV 572
                    L++ER ++  ER    ++ KR+V
Sbjct: 998  --------LEEERKAI-LERIEEYEKKKREV 1019

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]

 Score = 64.4 bits (157), Expect = 2e-10
 Identities = 124/620 (20%), Positives = 253/620 (40%), Gaps = 38/620 (6%)

Query: 158 MVENAQKKFAEAEAKLHAAESLQAEANRYHRSAERKLQ-EVVAREDDLSRRIASFKADCE 216
           + E  ++   EA+AK+   E   +E           L+ E+   +     +    + + E
Sbjct: 172 LSELLKEVIKEAKAKIEELEGQLSELLEDIEDLLEALEEELKELKKLEEIQEEQEEEELE 231

Query: 217 EKEREIIRERQSLSDRKKILQQEHERLLDAQTLLNE----REDHILSKLQELSRKEKELE 272
           ++   +      L + K+ L++   RLL+ ++L  E    RE+ +    + L   E+++E
Sbjct: 232 QEIEALEERLAELEEEKERLEELKARLLEIESLELEALKIREEELRELERLLEELEEKIE 291

Query: 273 ASRANVEEKFKALNEEKSNLDLTLVSLLKREEAVIEREASLQKKEQKL--LVSQETLASK 330
                  E  +   E +    L L  L +  E +   E  L+K E+KL  L S+    ++
Sbjct: 292 RLEELEREIEELEEELEGLRAL-LEELEELLEKLKSLEERLEKLEEKLEKLESELEELAE 350

Query: 331 ESNEIQKIIANHESALRVKQSEFEA------ELAIKYKLAEDEIEKKRRAWELRDLDLGQ 384
           E NE+ K++      L  +  E E       E   + + A  E++++         ++ +
Sbjct: 351 EKNELAKLLEERLKELEERLEELEKELEKALERLKQLEEAIQELKEELAELSAALEEIQE 410

Query: 385 REESLLEREHDLEVQSRALVDKEKDLVERSHLLEEKENKLIAFEKEADLKKSLLQK-EKE 443
             E L +   +LE +   L ++ K L E+ + LE KE  +       +      Q+  +E
Sbjct: 411 ELEELEKELEELERELEELEEEIKKLEEQINQLESKELMIAELAGAGEKCPVCGQELPEE 470

Query: 444 EVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEAMKSEAGELSVLEIKLKE--ELDVVRAQK 501
               +    +  L  L+E+  +     +  E ++    EL  LE +L E  EL+    ++
Sbjct: 471 HEKELLELYELELEELEEELSREKEEAELREEIEELEKELRELEEELIELLELEEALKEE 530

Query: 502 LELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVERVVVSKSLKDERDSLRQER 561
           LE  +E  +  LE+ +   E   + + +EELR+  +R+        + LK+  + LR  R
Sbjct: 531 LEEKLEKLENLLEELEELKEKLQLQQLKEELRQLEDRL--------QELKELLEELRLLR 582

Query: 562 DAMRDQHKRDVDSLNREREEFMNKMVHEHSEWFTKIQQERADFLLGIEMQKRDLENCIEK 621
               +  +       RER + + K + E  E  +++++      L +   + +LE   E+
Sbjct: 583 TRKEELEE------LRERLKELKKKLKELEERLSQLEELLQS--LELSEAENELEEAEEE 634

Query: 622 RREELESSFREREKAFEEEKMREFQQISSLKEKAEKEL---EQVTLEIKRLDLERMEINM 678
              ELE      +   EE      +++    E+ E E+    Q     ++L+ +  E+  
Sbjct: 635 LESELEK--LNLQAELEELLQAALEELEEKVEELEAEIRRELQRIENEEQLEEKLEELEQ 692

Query: 679 DRQRRDREWAELNNSIEELMVQRQKLEEQRQLLHADREEIQAESERLKKLEDLKIAVDYM 738
             +  ++   EL   +++L    Q +EE         E  +   +  K LE L+   + +
Sbjct: 693 LEEELEQLREELEELLKKLGEIEQLIEELESRKAELEELKKELEKLEKALELLEELREKL 752

Query: 739 AVSEMQRSRLEHSQKKISAK 758
             + ++   L +   +I A+
Sbjct: 753 GKAGLRADILRNLLAQIEAE 772

Length = 908

>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional

 Score = 63.9 bits (156), Expect = 3e-10
 Identities = 119/541 (21%), Positives = 231/541 (42%), Gaps = 32/541 (5%)

Query: 214 DCEEKEREIIRERQSLSDRKKILQQEHERLLDAQTLLNEREDHILSKLQELSRKEKELEA 273
           D E   + +    + +  R + L++  +R  + + L+ E+E  +   L+E++    EL  
Sbjct: 159 DYENAYKNLGEVIKEIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELP- 217

Query: 274 SRANVEEKFKALNEEKSNLDLTLVSLLKREEAVIEREASLQKKEQKLLVSQETLASKESN 333
               + E+ + L +E   L+     + + E+ +   E S +K E+K+   +E +   +  
Sbjct: 218 ---ELREELEKLEKEVKELEELKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKK- 273

Query: 334 EIQKIIANHESALRVKQSEFEAELAIKYKLAEDEIEKKRRAWELRDLDLGQREESLLERE 393
              +I    E    +K+ + +AE  IK     +E   + R  E R   L +    + ER 
Sbjct: 274 ---EIEELEEKVKELKELKEKAEEYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEERI 330

Query: 394 HDLEVQSRALVDKEKDLVERSHLLEEKENKLIAFEKEADLKKSLLQKEKEEVNIIKSDLQ 453
            +LE +   L + +K L E    LEE E +   +E+    K+ L + +K    +    L+
Sbjct: 331 KELEEKEERLEELKKKLKELEKRLEELEERHELYEEAKAKKEELERLKKRLTGLTPEKLE 390

Query: 454 KSLSSLDEKKKQVNCAKDKLEA----MKSEAGELSVLEIKLKEELDVVRAQKLELMVETD 509
           K L  L++ K+++     K+ A    +K E  EL     +LK+          EL  E  
Sbjct: 391 KELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKKAKGKCPVCGRELTEEHR 450

Query: 510 KLQLEK-----AKFEAEWEMIDEKREELRKEAERVAVERVVVSK--SLKDERDSLRQERD 562
           K  LE+      + E E + I+EK  +LRKE   +       S+   LK+  + L++  +
Sbjct: 451 KELLEEYTAELKRIEKELKEIEEKERKLRKELRELEKVLKKESELIKLKELAEQLKELEE 510

Query: 563 AMRDQHKRDVDSLNREREEFMNKMVHEHSEWFTKIQQERADFLLGIEMQKRDLENCI--- 619
            ++  +  +++    E E+   K++    E   K  ++  + L  ++ +  +LE  +   
Sbjct: 511 KLKKYNLEELEKKAEEYEKLKEKLIKLKGE--IKSLKKELEKLEELKKKLAELEKKLDEL 568

Query: 620 EKRREELESSFREREKAFEEEKMREFQQISSLKEK------AEKELEQVTLEIKRLDLER 673
           E+   EL     E      EE     +++     +      AEKELE+   E+K+L+ E 
Sbjct: 569 EEELAELLKELEELGFESVEELEERLKELEPFYNEYLELKDAEKELEREEKELKKLEEEL 628

Query: 674 MEINMDRQRRDREWAELNNSIEELMVQ--RQKLEEQRQLLHADREEIQAESERLKKLEDL 731
            +   +    ++   EL   +EEL  +   ++ EE R+       E+      L++LE  
Sbjct: 629 DKAFEELAETEKRLEELRKELEELEKKYSEEEYEELREEYLELSRELAGLRAELEELEKR 688

Query: 732 K 732
           +
Sbjct: 689 R 689

Length = 880

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 64.0 bits (156), Expect = 4e-10
 Identities = 78/330 (23%), Positives = 157/330 (47%), Gaps = 8/330 (2%)

Query: 406 KEKDLVERSHLLEEKENKLIAFEKEADLKKSLLQKEKE----EVNIIKSDLQKSLSSLDE 461
            E++L     LLEE E +L   E++A+  +   + + E    E+ ++ + L++    L+E
Sbjct: 184 TEENLERLEDLLEELEKQLEKLERQAEKAERYQELKAELRELELALLLAKLKELRKELEE 243

Query: 462 KKKQVNCAKDKLEAMKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAE 521
            +++++  +++LE ++ E  E      +LK EL+ +R +  EL  E  +L+ E  + E E
Sbjct: 244 LEEELSRLEEELEELQEELEEAEKEIEELKSELEELREELEELQEELLELKEEIEELEGE 303

Query: 522 WEMIDEKREELRKEAERVAVERVVVSKSLKDERDSLRQERDAMRDQHKRDVDSLNREREE 581
             ++ E+ EEL  E E +  ER+   K   +      +ER+ + ++ ++ +  L   +EE
Sbjct: 304 ISLLRERLEELENELEELE-ERLEELKEKIEALKEELEERETLLEELEQLLAELEEAKEE 362

Query: 582 FMNKMVHEHSEWFTKIQQERADF--LLGIEMQKRDLENCIEKRREELESSFREREKAFEE 639
              K+     E     +  R +   L     + R+    +++  E LE    ER     E
Sbjct: 363 LEEKLSALLEELEELFEALREELAELEAELAEIRNELEELKREIESLEER-LERLSERLE 421

Query: 640 EKMREFQQISSLKEKAEKELEQVTLEIKRLDLERMEINMDRQRRDREWAELNNSIEELMV 699
           +   E +++ +  E+ + ELE++  E++ L+ +  E+    +  +RE AEL   ++ L  
Sbjct: 422 DLKEELKELEAELEELQTELEELNEELEELEEQLEELRDRLKELERELAELQEELQRLEK 481

Query: 700 QRQKLEEQRQLLHADREEIQAESERLKKLE 729
           +   LE +   L A++   Q     L+ LE
Sbjct: 482 ELSSLEARLDRLEAEQRASQGVRAVLEALE 511

Length = 1163

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 61.3 bits (148), Expect = 3e-09
 Identities = 151/712 (21%), Positives = 289/712 (40%), Gaps = 54/712 (7%)

Query: 74   KKELASKYEQIKASAEAAELLQKHDRASHLSAIAEARKREESLKKTLGVEKECIASLEKA 133
            K E A K E+ K  AE A   ++  +A       EARK E++ +  +  + E     E  
Sbjct: 1110 KAEEARKAEEAKKKAEDARKAEEARKAEDARKAEEARKAEDAKRVEIARKAEDARKAE-- 1167

Query: 134  VHEIRAESAETKVAADSKFAEARCMVENAQKKFAEAEAKLHAAESLQAEANRYHRSAERK 193
                     E + A D+K AEA    E  +K    AE    A ++ +AEA R     ERK
Sbjct: 1168 ---------EARKAEDAKKAEAARKAEEVRK----AEELRKAEDARKAEAARKAEE-ERK 1213

Query: 194  LQEVVARED----DLSRRIASFKADCEEKER-EIIRERQSLSDRKKILQQEHERLLDAQT 248
             +E    ED    +  ++    K D EE ++ E  R  + +   ++       R   A  
Sbjct: 1214 AEEARKAEDAKKAEAVKKAEEAKKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIK 1273

Query: 249  LLNEREDHILSKLQELSRKEKELEASRANVEEKFKALNEEKSNLDLTLVSLLKREEAVIE 308
                R+   L K +E  + ++  +A      ++ K   EE    D       K+ E   +
Sbjct: 1274 AEEARKADELKKAEEKKKADEAKKAEEKKKADEAKKKAEEAKKAD----EAKKKAEEAKK 1329

Query: 309  REASLQKKEQKLLVSQETLASKESNEIQKIIANHESALRVKQSEFEAELAIKYKLAEDEI 368
            +  + +KK ++   + E   ++      +  A  E A   ++ + EA+   K   A+ + 
Sbjct: 1330 KADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKK--KADAAKKKA 1387

Query: 369  EKKRRAWELRDLDLGQREESLLEREHDLEVQSRALVDKEKDLVERSHLLEEKENKLIAFE 428
            E+K++A E +       E+     E      ++   D+ K   E     +E + K    +
Sbjct: 1388 EEKKKADEAKK---KAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAK 1444

Query: 429  KEADLKKSLLQKEKEEVNIIKSDLQKSLSSLD---EKKKQVNCAKDKLEAMKSEAGELSV 485
            K  + KK   + +K E    K++  K         E+ K+ + AK K E  K +A E   
Sbjct: 1445 KADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKK 1504

Query: 486  LEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAE-RVAVERV 544
                 K+  +  +A++ +   E  K +  K   EA+     +K +EL+K  E + A E+ 
Sbjct: 1505 AAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELKKAEELKKAEEKK 1564

Query: 545  VVSKSLKDERD---SLRQERDAMRDQHKRDVDSLNREREEFMNKMVHEHSEWFTKIQQER 601
               ++ K E D   +LR+  +A + +  R  + +    EE   K          KI+ E 
Sbjct: 1565 KAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEE 1624

Query: 602  ADFLLGIEMQKRDLENCIEKRREELESSFREREKAFEEEKMREFQQISSLKE-------- 653
                L    +++     ++K+  E +    E +KA EE K++  ++    +E        
Sbjct: 1625 ----LKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEA 1680

Query: 654  -KAEKELEQVTLEIKRLDLERMEINMDRQRRDREWAELNNSIEELMVQRQKLEEQRQLLH 712
             KAE++ ++    +K+   E  +    +++   E  +     +     + K EE ++   
Sbjct: 1681 KKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKK--- 1737

Query: 713  ADREEIQAESERLKKLEDLKIAVDYMAVSEMQRSRLEHSQKKISAKRHLNQQ 764
             + EE + ++E  KK E+ K  + ++   E +++     +K+   +  L+++
Sbjct: 1738 -EAEEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKEKEAVIEEELDEE 1788

Length = 2084

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 61.3 bits (149), Expect = 3e-09
 Identities = 81/382 (21%), Positives = 167/382 (43%), Gaps = 22/382 (5%)

Query: 224  RERQSLSDRKKILQQEHERLLDAQTLLNEREDHILSKLQELSRKEKELEASRANVEEKFK 283
            R ++S   +K+ L++  E L + +  L + E+ + S   EL   E  LE  R  +EE  +
Sbjct: 657  RNKRSSLAQKRELKELEEELAELEAQLEKLEEELKSLKNELRSLEDLLEELRRQLEELER 716

Query: 284  ALNEEKSNLDLTLVSLLKREEAVIEREASLQKKEQKLLVSQETLASKESNEIQKIIANHE 343
             L E K  L     + L+ E   ++      ++E + L  +     +   E+++ + + E
Sbjct: 717  QLEELKREL-----AALEEELEQLQSRLEELEEELEELEEELEELQERLEELEEELESLE 771

Query: 344  SALRVKQSEFEAELAIKYKLAE--DEIEKKRRAWELRDLDLGQREESLLEREHDLEVQSR 401
             AL   + E E     +  L E  +E+E++    E R   L +  ESL +R   LE +  
Sbjct: 772  EALAKLKEEIEELEEKRQALQEELEELEEELEEAERRLDALERELESLEQRRERLEQEIE 831

Query: 402  ALVDKEKDLVERSHLLEEKENKLIAFEKEADLKKSLLQKEKEEVNIIKSDLQKSLSSLDE 461
             L ++ ++L E+   L+E E +L   EKE +  K  L++ + E   ++ +L++     +E
Sbjct: 832  ELEEEIEELEEK---LDELEEELEELEKELEELKEELEELEAEKEELEDELKELEEEKEE 888

Query: 462  KKKQVNCAKDKLEAMKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAE 521
             ++++   + +L  +K    E+  L  +L+E    +   ++EL    ++L+      E  
Sbjct: 889  LEEELRELESELAELKE---EIEKLRERLEELEAKLERLEVELPELEEELE------EEY 939

Query: 522  WEMIDEKREELRKEAERVAVERVVVSKSLKDERDSLRQERDAMRDQH---KRDVDSLNRE 578
             + ++ + E   +  E        V+    +E + + +  + ++ Q    +   + L   
Sbjct: 940  EDTLETELEREIERLEEEIEALGPVNLRAIEEYEEVEERYEELKSQREDLEEAKEKLLEV 999

Query: 579  REEFMNKMVHEHSEWFTKIQQE 600
             EE   +      E F KI + 
Sbjct: 1000 IEELDKEKRERFKETFDKINEN 1021

Length = 1163

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 60.1 bits (146), Expect = 6e-09
 Identities = 76/358 (21%), Positives = 150/358 (41%), Gaps = 28/358 (7%)

Query: 190 AERKLQEVVAREDDLSRRIASFKADCE--EKEREIIRERQSLSDRKKILQQE--HERLLD 245
           AERKL+      + L   +   +   E  E++ E     Q L    + L+      +L +
Sbjct: 177 AERKLERTEENLERLEDLLEELEKQLEKLERQAEKAERYQELKAELRELELALLLAKLKE 236

Query: 246 AQTLLNEREDHILSKLQELSRKEKELEASRANVEEKFKALNE--EKSNLDLTLVSLLKRE 303
            +  L E E+ +    +EL   ++ELE +   +EE    L E  E+       +  LK E
Sbjct: 237 LRKELEELEEELSRLEEELEELQEELEEAEKEIEELKSELEELREELEELQEELLELKEE 296

Query: 304 EAVIEREASLQKKEQKLLVSQETLASKESNEIQKIIANHESALRVKQSEFE--AELAIKY 361
              +E E SL ++  + L ++     +   E+++ I   +  L  +++  E   +L  + 
Sbjct: 297 IEELEGEISLLRERLEELENELEELEERLEELKEKIEALKEELEERETLLEELEQLLAEL 356

Query: 362 KLAEDEIEKKRRAWELRDLDLGQREESLLEREHDLEVQSRALVDKEKDLVERSHLLEEKE 421
           + A++E+E+K  A       L +  E L E                ++L E    L E  
Sbjct: 357 EEAKEELEEKLSA-------LLEELEELFEA-------------LREELAELEAELAEIR 396

Query: 422 NKLIAFEKEADLKKSLLQKEKEEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEAMKSEAG 481
           N+L   ++E +  +  L++  E +  +K +L++  + L+E + ++    ++LE ++ +  
Sbjct: 397 NELEELKREIESLEERLERLSERLEDLKEELKELEAELEELQTELEELNEELEELEEQLE 456

Query: 482 ELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERV 539
           EL     +L+ EL  ++ +   L  E   L+    + EAE       R  L      +
Sbjct: 457 ELRDRLKELERELAELQEELQRLEKELSSLEARLDRLEAEQRASQGVRAVLEALESGL 514

Length = 1163

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 60.1 bits (146), Expect = 6e-09
 Identities = 70/374 (18%), Positives = 164/374 (43%), Gaps = 24/374 (6%)

Query: 323  SQETLASKESNEIQKIIANHESALRVKQSEFEAELAIKYKLAEDEIEKKRRAWELRDLDL 382
                   +E  E+++ +A  E+ L   + E +  L  + +  ED +E+ RR  E  +  L
Sbjct: 660  RSSLAQKRELKELEEELAELEAQLEKLEEELK-SLKNELRSLEDLLEELRRQLEELERQL 718

Query: 383  GQREESLLEREHDLEVQSRALVDKEKDLVERSHLLEEKENKLIAFEKEADLKKSLLQKEK 442
             + +        +L      L   +  L E    LEE E +L   ++  +  +  L+  +
Sbjct: 719  EELKR-------ELAALEEELEQLQSRLEELEEELEELEEELEELQERLEELEEELESLE 771

Query: 443  EEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEAMKSEAGELSVLEIKLKEELDVVRAQKL 502
            E +  +K ++++        ++++   +++LE  +     L      L++  + +  +  
Sbjct: 772  EALAKLKEEIEELEEKRQALQEELEELEEELEEAERRLDALERELESLEQRRERLEQEIE 831

Query: 503  ELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVERVVVSKSLKDERDSLRQERD 562
            EL  E ++L+ +  + E E E ++++ EEL++E E +  E+  +   LK+  +   +  +
Sbjct: 832  ELEEEIEELEEKLDELEEELEELEKELEELKEELEELEAEKEELEDELKELEEEKEELEE 891

Query: 563  AMRDQHKRDVDSLNREREEFMNKMVHEHSEWFTKIQQERADFLLGIEMQKRDLENCIEKR 622
             +R + + ++  L  E E+   ++         + + ER      +E++  +LE  +E+ 
Sbjct: 892  ELR-ELESELAELKEEIEKLRERLEE------LEAKLER------LEVELPELEEELEEE 938

Query: 623  REELESSFREREKAFEEEKMREFQQISSLKEKAEKELEQVTLEIKRLDLERMEINMDRQR 682
             E+   +  ERE    EE++     ++    +A +E E+V    + L  +R ++   +++
Sbjct: 939  YEDTLETELEREIERLEEEIEALGPVN---LRAIEEYEEVEERYEELKSQREDLEEAKEK 995

Query: 683  RDREWAELNNSIEE 696
                  EL+    E
Sbjct: 996  LLEVIEELDKEKRE 1009

Length = 1163

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 59.7 bits (145), Expect = 9e-09
 Identities = 75/318 (23%), Positives = 150/318 (47%), Gaps = 14/318 (4%)

Query: 268 EKELEASRANVEEKFKALNEEKSNLDLTLVSLLKREEAVIEREASLQKK----EQKLLVS 323
           E++LE +  N+E     L E +  L+      L+R+    ER   L+ +    E  LL++
Sbjct: 178 ERKLERTEENLERLEDLLEELEKQLEK-----LERQAEKAERYQELKAELRELELALLLA 232

Query: 324 QETLASKESNEIQKIIANHESALRVKQSEFEAELAIKYKLAEDEIEKKRRAWELRDLDLG 383
           +     KE  E+++ ++  E  L   Q E E E   + +  + E+E+ R   E    +L 
Sbjct: 233 KLKELRKELEELEEELSRLEEELEELQEELE-EAEKEIEELKSELEELREELEELQEELL 291

Query: 384 QREESLLEREHDLEVQSRALVDKEKDLVERSHLLEEKENKLIAFEKE---ADLKKSLLQK 440
           + +E + E E ++ +    L + E +L E    LEE + K+ A ++E    +     L++
Sbjct: 292 ELKEEIEELEGEISLLRERLEELENELEELEERLEELKEKIEALKEELEERETLLEELEQ 351

Query: 441 EKEEVNIIKSDLQKSLSSLDEKKKQVNCA-KDKLEAMKSEAGELSVLEIKLKEELDVVRA 499
              E+   K +L++ LS+L E+ +++  A +++L  +++E  E+     +LK E++ +  
Sbjct: 352 LLAELEEAKEELEEKLSALLEELEELFEALREELAELEAELAEIRNELEELKREIESLEE 411

Query: 500 QKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVERVVVSKSLKDERDSLRQ 559
           +   L    + L+ E  + EAE E +  + EEL +E E +  +   +   LK+    L +
Sbjct: 412 RLERLSERLEDLKEELKELEAELEELQTELEELNEELEELEEQLEELRDRLKELERELAE 471

Query: 560 ERDAMRDQHKRDVDSLNR 577
            ++ ++   K       R
Sbjct: 472 LQEELQRLEKELSSLEAR 489

Length = 1163

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 59.0 bits (143), Expect = 1e-08
 Identities = 74/323 (22%), Positives = 137/323 (42%), Gaps = 21/323 (6%)

Query: 164 KKFAEAEAKLHAAESLQAEANRYHRSAERKLQEVVAREDDLSRRIASFKADCEEKEREII 223
           +++ E +A+L   E     A        ++L+E+      L   +   + + EE E+EI 
Sbjct: 213 ERYQELKAELRELELALLLAKLKE--LRKELEELEEELSRLEEELEELQEELEEAEKEIE 270

Query: 224 RERQSLSDRKKILQQEHERLLDAQTLLNERE---DHILSKLQELSRKEKELEASRANVEE 280
             +  L + ++ L++  E LL+ +  + E E     +  +L+EL  + +ELE     ++E
Sbjct: 271 ELKSELEELREELEELQEELLELKEEIEELEGEISLLRERLEELENELEELEERLEELKE 330

Query: 281 KFKALNEEKSNLDLTLVSLLKREEAVIEREASLQKKEQKLLVSQETLASKESNEIQKIIA 340
           K +AL EE    +  L  L +    + E +  L++K   LL   E L      E+ ++ A
Sbjct: 331 KIEALKEELEERETLLEELEQLLAELEEAKEELEEKLSALLEELEELFEALREELAELEA 390

Query: 341 NHESALRVKQSEFEAELAIKYKLAEDEIEKKRRAWELRDLDLGQREESLLEREHDLEVQS 400
                    +              + EIE      E     L   +E L E E +LE   
Sbjct: 391 ELAEIRNELEE------------LKREIESLEERLERLSERLEDLKEELKELEAELEELQ 438

Query: 401 RALVDKEKDLVERSHLLEEKENKLIAFEKEADLKKSLLQKEKEEVNIIKSDLQKSLSSLD 460
             L +  ++L E    LEE  ++L   E+E    +  LQ+ ++E+    S L+  L  L+
Sbjct: 439 TELEELNEELEELEEQLEELRDRLKELERELAELQEELQRLEKEL----SSLEARLDRLE 494

Query: 461 EKKKQVNCAKDKLEAMKSEAGEL 483
            +++     +  LEA++S    +
Sbjct: 495 AEQRASQGVRAVLEALESGLPGV 517

Length = 1163

>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]

 Score = 59.0 bits (143), Expect = 1e-08
 Identities = 94/509 (18%), Positives = 204/509 (40%), Gaps = 15/509 (2%)

Query: 73  EKKELASKYEQIKASAEAAELLQKHDRASHLSAIAEARKREESLKKTLGVEKECIASLEK 132
              EL  + E++    +A  L  +      L    E  +  E L + L  + E +  LE+
Sbjct: 240 RLAELEEEKERL-EELKARLLEIESLELEALKIREEELRELERLLEELEEKIERLEELER 298

Query: 133 AVHEIRAESAETKVAADSKFAEARCMVENAQKKFAEAEAKLHAAESLQAEANRYHRSAER 192
            + E+  E    +   +    E    +++ +++  + E KL   ES   E         +
Sbjct: 299 EIEELEEELEGLRALLEEL-EELLEKLKSLEERLEKLEEKLEKLESELEELAEEKNELAK 357

Query: 193 KLQEVVAREDDLSRRIASFKADCEEKEREIIRERQSLSDRKKILQQEHERLLDAQTLLNE 252
            L+E +   ++    +        E+ +++    Q L +    L    E + +    L +
Sbjct: 358 LLEERLKELEERLEELEKELEKALERLKQLEEAIQELKEELAELSAALEEIQEELEELEK 417

Query: 253 REDHILSKLQELSRKEKELEASRANVEEKFKALNEEKSNLDLTLVSLLKREEAVIEREAS 312
             + +  +L+EL  + K+LE     +E K   + E     +   V   +  E   +    
Sbjct: 418 ELEELERELEELEEEIKKLEEQINQLESKELMIAELAGAGEKCPVCGQELPEEHEKELLE 477

Query: 313 LQKKEQKLL---VSQETLASKESNEIQKIIANHESALRVKQSEFEAELAIKYKLAEDEIE 369
           L + E + L   +S+E   ++   EI+++               E E A+K +L E   +
Sbjct: 478 LYELELEELEEELSREKEEAELREEIEELEKELRELEEELIELLELEEALKEELEEKLEK 537

Query: 370 KKRRAWELRDLDLGQREESLLEREHDLEVQSRALVDKEKDLVERSHLLE------EKENK 423
            +    EL +L    + + L E    LE + + L +  ++L       E      E+  +
Sbjct: 538 LENLLEELEELKEKLQLQQLKEELRQLEDRLQELKELLEELRLLRTRKEELEELRERLKE 597

Query: 424 LIAFEKEADLKKSLLQKEKEEVNII--KSDLQKSLSSLDEKKKQVNCAKDKLEAMKSEAG 481
           L    KE + + S L++  + + +   +++L+++   L+ + +++N   +  E +++   
Sbjct: 598 LKKKLKELEERLSQLEELLQSLELSEAENELEEAEEELESELEKLNLQAELEELLQAALE 657

Query: 482 ELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAV 541
           EL     +L+ E+     +        +KL+ E  + E E E + E+ EEL K+      
Sbjct: 658 ELEEKVEELEAEIRRELQRIENEEQLEEKLE-ELEQLEEELEQLREELEELLKKLGE-IE 715

Query: 542 ERVVVSKSLKDERDSLRQERDAMRDQHKR 570
           + +   +S K E + L++E + +    + 
Sbjct: 716 QLIEELESRKAELEELKKELEKLEKALEL 744

Length = 908

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 58.9 bits (143), Expect = 1e-08
 Identities = 131/723 (18%), Positives = 281/723 (38%), Gaps = 56/723 (7%)

Query: 49  LIAYIAKLETEIFEHQHHMGLLILEKKELASKYEQIKASAEAAELLQKH---DRASHLSA 105
           L   +++LE EI E Q  +  L  E   L  + + ++      E   +          S 
Sbjct: 272 LRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESK 331

Query: 106 IAEARKREESLKKTLGVEKECIASLEKAVHEIRAESAETKVAAD----------SKFAEA 155
           + E  +    L++ L   KE + SLE  + E+ AE  E +   +          SK A+ 
Sbjct: 332 LDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQL 391

Query: 156 RCMVENAQKKFAEAEAKLHAAESLQAEANRYHRSAERKLQ-----EVVAREDDLSRRIAS 210
              + +   +    EA+L   E  +    +      +KL+     E+ A  ++L   +  
Sbjct: 392 ELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEE 451

Query: 211 FKADCEEKEREIIRERQSLSDRKKILQQEHERLLDAQTLLNEREDHILSKLQELSRKEKE 270
            + + E  E  +   R+ L + ++ L      L   Q  L+  E  +   L+  S   K 
Sbjct: 452 LQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLER-LQENLEGFSEGVKA 510

Query: 271 LEASRA-------------NVEEKFKALNEEKSNLDLTLVSLLKREEAVIEREASLQKKE 317
           L  +++             +V+E ++A  E      L  V +++   A  +  A L++ E
Sbjct: 511 LLKNQSGLSGILGVLSELISVDEGYEAAIEAALGGRLQAV-VVENLNAAKKAIAFLKQNE 569

Query: 318 QKL-------LVSQETLASKESNEIQKIIANHESALRVKQSEFEAELAIKYKLAEDEIEK 370
                      +    +   +   ++ I      A  + + + +   A+ Y L    +  
Sbjct: 570 LGRVTFLPLDSIKGTEIQGNDREILKNIEGFLGVAKDLVKFDPKLRKALSYLLGGVLV-V 628

Query: 371 KRRAWELRDLDLGQREESLLEREHDL----EVQSRALVDKEKDLVERSHLLEEKENKLIA 426
                 L      +    ++  + DL     V +         ++ER   +EE E K+  
Sbjct: 629 DDLDNALELAKKLRPGYRIVTLDGDLVRPGGVITGGSAKTNSSILERRREIEELEEKIEE 688

Query: 427 FEKEADLKKSLLQKEKEEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEAMKSEAGELSVL 486
            E++    +  L + ++E+  ++ +L++    L+E  +Q++  +  L  +++E  +L   
Sbjct: 689 LEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEER 748

Query: 487 EIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVERVVV 546
             +L +EL  + A+  EL    ++ + E A+ EAE        EEL  + E++  E   +
Sbjct: 749 IAQLSKELTELEAEIEELEERLEEAEEELAEAEAE-------IEELEAQIEQLKEELKAL 801

Query: 547 SKSLKDERDSLRQERDAMRDQHKRDVDSLNR-EREEFMNKMVHEHSEWFTKIQQERADFL 605
            ++L + R  L    +   +  +R      R    E   + + E  E  ++  +  A  +
Sbjct: 802 REALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEI 861

Query: 606 LGIEMQKRDLENCIEKRREELESSFREREKAFE--EEKMREFQQISSLKEKAEKELEQVT 663
             +E    +LE+ +E    E  S            EE   E +++ S + +  +ELE++ 
Sbjct: 862 EELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELR 921

Query: 664 LEIKRLDLERMEINMDRQR-RDREWAELNNSIEELMVQRQKLEEQRQLLHADREEIQAES 722
            ++ +L+L    + +     ++R   E + ++EE      K+E+  +      + ++ + 
Sbjct: 922 EKLAQLELRLEGLEVRIDNLQERLSEEYSLTLEEAEALENKIEDDEEEARRRLKRLENKI 981

Query: 723 ERL 725
           + L
Sbjct: 982 KEL 984

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 57.8 bits (140), Expect = 3e-08
 Identities = 87/378 (23%), Positives = 140/378 (37%), Gaps = 88/378 (23%)

Query: 354 EAELAIKYKLAEDEIEKKRRAWELRDLDLGQREESLLEREHDLEVQSRALVDKEKDLVER 413
           +AE A +YK    E++ + R  EL  L    R E L E   +L+ + +   ++ ++L   
Sbjct: 208 QAEKAERYK----ELKAELRELELALL--VLRLEELREELEELQEELKEAEEELEELTAE 261

Query: 414 SHLLEEKENKLIAFEKEADLKKSLLQKEKEEVNIIKSDLQKSLSSLDEKKKQVNCAKDKL 473
              LEEK  +L     E + +   LQKE   +    S L++    L E+   +    ++L
Sbjct: 262 LQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEEL 321

Query: 474 EAMKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELR 533
           EA   E         +L EEL  +  +  EL  E + L+ E  + EAE E ++ + EEL 
Sbjct: 322 EAQLEELESKL---DELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELE 378

Query: 534 KEAERVAVERVVVSKSLKDERDSLRQERDAMRDQHKRDVDSLNREREEFMNKMVHEHSEW 593
           ++ E            L+ +   L  +  ++ ++ +R    L R                
Sbjct: 379 EQLET-----------LRSKVAQLELQIASLNNEIERLEARLER---------------- 411

Query: 594 FTKIQQERADFLLGIEMQKRDLENCIEKRREELESSFREREKAFEEEKMREFQQISSLKE 653
                                    +E RRE L+    E  K  EE +++E Q      E
Sbjct: 412 -------------------------LEDRRERLQQEIEELLKKLEEAELKELQAELEELE 446

Query: 654 KAEKELEQVTLEIKRLDLERMEINMDRQRRDREWAELNNSIEELMVQRQKLEEQRQLLHA 713
           +  +EL+                            EL    E L   R++LEE  Q L A
Sbjct: 447 EELEELQ---------------------------EELERLEEALEELREELEEAEQALDA 479

Query: 714 DREEIQAESERLKKLEDL 731
              E+     RL  LE L
Sbjct: 480 AERELAQLQARLDSLERL 497

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 56.6 bits (137), Expect = 6e-08
 Identities = 73/348 (20%), Positives = 149/348 (42%), Gaps = 20/348 (5%)

Query: 69  LLILEKKELASKYEQIKASAEAAELLQKHDRASHLSAIAEARKREESLKKTLGVEKECIA 128
           L  LE++    + +  K   E   L  +      L  + E R++ E L++ L   K  +A
Sbjct: 669 LKELEEELAELEAQLEKLEEELKSLKNELRSLEDL--LEELRRQLEELERQLEELKRELA 726

Query: 129 SLEKAVHEIRAESAETKVAADSKFAEARCMVENAQKKFAEAEAKLHAAESLQAEANRYHR 188
           +LE+ + ++++   E     + +  E    +E  Q++  E E +L + E   A+      
Sbjct: 727 ALEEELEQLQSRLEEL----EEELEELEEELEELQERLEELEEELESLEEALAKLKEEIE 782

Query: 189 SAERKLQEVVAREDDLSRRIASFKADCEEKEREIIRERQSLSDRKKILQQEHERLLDAQT 248
             E K Q +    ++L   +   +   +  ERE+    +SL  R++ L+QE E L     
Sbjct: 783 ELEEKRQALQEELEELEEELEEAERRLDALEREL----ESLEQRRERLEQEIEEL----- 833

Query: 249 LLNEREDHILSKLQELSRKEKELEASRANVEEKFKALNEEKSNLDLTLVSLLKREEAVIE 308
              E  + +  KL EL  + +ELE     ++E+ + L  EK  L+  L  L + +E + E
Sbjct: 834 --EEEIEELEEKLDELEEELEELEKELEELKEELEELEAEKEELEDELKELEEEKEELEE 891

Query: 309 REASLQKKEQKL---LVSQETLASKESNEIQKIIANHESALRVKQSEFEAELAIKYKLAE 365
               L+ +  +L   +        +   +++++           + E+E  L  + +   
Sbjct: 892 ELRELESELAELKEEIEKLRERLEELEAKLERLEVELPELEEELEEEYEDTLETELEREI 951

Query: 366 DEIEKKRRAWELRDLDLGQREESLLEREHDLEVQSRALVDKEKDLVER 413
           + +E++  A    +L   +  E + ER  +L+ Q   L + ++ L+E 
Sbjct: 952 ERLEEEIEALGPVNLRAIEEYEEVEERYEELKSQREDLEEAKEKLLEV 999

Length = 1163

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 56.6 bits (137), Expect = 7e-08
 Identities = 105/657 (15%), Positives = 230/657 (35%), Gaps = 54/657 (8%)

Query: 145 KVAADSKFAEARCMVENAQKKFAEAEAKLHAAESLQAEANRYHRSAERKLQEVVAREDDL 204
                 +  E +  ++ A+++  E  A+L   E    E        E +++E+      L
Sbjct: 234 LEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYAL 293

Query: 205 SRRIASFKADCEEKEREIIRERQSLSDRKKILQQEHERLLDAQTLLNEREDHILS---KL 261
           +  I+  +   +     +    + L + +  L++   +L +    L E E+ +     +L
Sbjct: 294 ANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEEL 353

Query: 262 QELSRKEKELEASRANVEEKFKALNEEKSNLDLTLVSLLKREEAVIEREASLQKKEQKLL 321
           + L  + +ELEA    +E + + L E+   L   +  L  +  ++      L+ + ++L 
Sbjct: 354 ESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLE 413

Query: 322 VSQETLASKESNEIQKIIANHESALRVKQSEFEAELAIKYKLAEDEIEKKRRAWELRDLD 381
             +E L  +    ++K+       L+ +  E E EL    +  E   E      E  +  
Sbjct: 414 DRRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEELREELEE- 472

Query: 382 LGQREESLLEREHDLEVQSRALVDKEKDLVERSHLLEEKENKLIAFEKEADLKKSLLQKE 441
             Q  ++       L+ +  +L   +++L   S  ++              +   L+  +
Sbjct: 473 AEQALDAAERELAQLQARLDSLERLQENLEGFSEGVKALLKNQSGLSGILGVLSELISVD 532

Query: 442 KEEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEAMK-SEAGELSVLEIKLKEELDVVRAQ 500
           +     I++ L   L ++  +      AK  +  +K +E G ++ L       LD ++  
Sbjct: 533 EGYEAAIEAALGGRLQAVVVENLNA--AKKAIAFLKQNELGRVTFLP------LDSIKGT 584

Query: 501 KLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVERVVVSKSLKDERDSLRQE 560
           +++     D+  L+  +          K +   ++A    +  V+V   L +  +  ++ 
Sbjct: 585 EIQ---GNDREILKNIEGFLGVAKDLVKFDPKLRKALSYLLGGVLVVDDLDNALELAKKL 641

Query: 561 RDAMR-----DQHKRDVDSLNREREEFMNKMVHEHSEWFTKIQQERADFLLGIEMQKRDL 615
           R   R         R    +     +  + ++          ++E  +    IE  +  +
Sbjct: 642 RPGYRIVTLDGDLVRPGGVITGGSAKTNSSILER--------RREIEELEEKIEELEEKI 693

Query: 616 ENCIEKRREELESSFREREKAFE------EEKMREFQQISSLKEKAEKELEQVTLEIKRL 669
              +EK   EL     E E+  E      EE  R+   +     + E E+EQ+   I +L
Sbjct: 694 AE-LEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQL 752

Query: 670 DLERMEINMDRQRRDREWAELNNSIEELMVQRQKLEEQ------------------RQLL 711
             E  E+  + +  +    E    + E   + ++LE Q                  R  L
Sbjct: 753 SKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAEL 812

Query: 712 HADREEIQAESERLKKLEDLKIAVDYMAVSEMQRSRLEHSQKKISAKRHLNQQTSLA 768
               EE     ERL+ LE    A +       ++        +  A      +  + 
Sbjct: 813 TLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIE 869

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional

 Score = 54.7 bits (132), Expect = 2e-07
 Identities = 116/533 (21%), Positives = 226/533 (42%), Gaps = 51/533 (9%)

Query: 73  EKKELASKYEQIKASAEAAELLQKHDRASHLSAIAEARKREESLKKTLGVEKECIASLEK 132
           E  EL  + E+ +   E A    + +    L    E R+  E+L+  +   +E IA  E+
Sbjct: 214 ELAELDEEIERYEEQREQARE-TRDEADEVLEEHEERREELETLEAEIEDLRETIAETER 272

Query: 133 AVHEIRAESAETKVAADSKFAEARCMVENAQKKFAEAEAKLHAAESLQAEANRYHRSAER 192
              E+  E  + +   +    E   ++  A    A+AEA                   E 
Sbjct: 273 EREELAEEVRDLRERLEELEEERDDLLAEAGLDDADAEA------------------VEA 314

Query: 193 KLQEVVAREDDLSRRIASFKADCEEKEREIIRERQSLSDRKKILQQEHERLLDAQTLLNE 252
           + +E+  R+++L  R+   +   +    E    R+   D ++  ++  E   + ++ L E
Sbjct: 315 RREELEDRDEELRDRLEECRVAAQAHNEEAESLREDADDLEERAEELREEAAELESELEE 374

Query: 253 REDHILSKLQELSRKEKELEASRANVEEKFKALNEEKSNLDLTLVSLLKREEAVIEREAS 312
             + +  + +E+   E+E+E  R    +    L   +  L+       +  E   E EA+
Sbjct: 375 AREAVEDRREEIEELEEEIEELRERFGDAPVDLGNAEDFLEELREERDELREREAELEAT 434

Query: 313 LQKKEQKLLVSQETLASKESNEIQKII--ANHESAL---RVKQSEFEAELAIKYKLAEDE 367
           L+   +++  ++  L + +  E  + +  + H   +   R +  E EAEL    +   +E
Sbjct: 435 LRTARERVEEAEALLEAGKCPECGQPVEGSPHVETIEEDRERVEELEAELE-DLEEEVEE 493

Query: 368 IEKK-RRAWELRDLDLGQREESLLEREHDLEVQSRALVDKEKDLVERSHLLEEKENKLIA 426
           +E++  RA +L + +   R E L ER  DLE     + ++ + + E+    EE   +   
Sbjct: 494 VEERLERAEDLVEAE--DRIERLEERREDLE---ELIAERRETIEEKRERAEELRERAAE 548

Query: 427 FEKEADLKKSLLQK---EKEEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEAMKSEAGEL 483
            E EA+ K+    +   E EE     ++L   L+ L E+ + +   +  L A+     E+
Sbjct: 549 LEAEAEEKREAAAEAEEEAEEAREEVAELNSKLAELKERIESLERIRTLLAAIADAEDEI 608

Query: 484 SVLEIKL----------KEELDVVRAQKLELMVETD-----KLQLEKAKFEAEWEMIDEK 528
             L  K           +E L   R +K EL  E D     + + +K + E   E ++EK
Sbjct: 609 ERLREKREALAELNDERRERLAEKRERKRELEAEFDEARIEEAREDKERAEEYLEQVEEK 668

Query: 529 REELRKEAERVAVERVVVSKSLKDERDSLRQERDAMRDQHKRDVDSLNREREE 581
            +ELR+E + +  E   V   L+ E + LR+ R+A+ ++ +  +++L  E EE
Sbjct: 669 LDELREERDDLQAEIGAVENELE-ELEELRERREALENRVEA-LEALYDEAEE 719

Length = 880

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 53.9 bits (130), Expect = 4e-07
 Identities = 74/350 (21%), Positives = 155/350 (44%), Gaps = 27/350 (7%)

Query: 192 RKLQEVVAREDDLSRRIASFKADCEEKEREIIRER---QSLSDRKKILQQEHERLLDAQT 248
           RK+ + +A   +  R+      + EE E  I R          + + L++E E+    Q 
Sbjct: 156 RKIIDEIAGVAEFDRKKEKALEELEEVEENIERLDLIIDEKRQQLERLRREREKAERYQA 215

Query: 249 LLNEREDHILSKLQELSRKEKELEASRANVEEKFKALNEEKSNLDLTLVSLLKREEAVIE 308
           LL E+ ++   +  EL ++++ LE  +  +E +  +L EE   L   +  L KR E + +
Sbjct: 216 LLKEKREY---EGYELLKEKEALERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQ 272

Query: 309 REASLQKKEQKLLVSQETLASKESNEIQKIIANHESALRVKQSEFEAELAIKYKLAEDEI 368
               L KK + L   ++    ++  E++  IA+ E ++  K+ E E +   +    E EI
Sbjct: 273 LLEELNKKIKDLGEEEQLRVKEKIGELEAEIASLERSIAEKERELE-DAEERLAKLEAEI 331

Query: 369 EK-----------------KRRAWELRDLDLGQREESLLEREHDLEVQSRALVDKEKDLV 411
           +K                 +R        +L +  E L     +++ +     D+ KD  
Sbjct: 332 DKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYR 391

Query: 412 ERSHLLEEKENKLIAFEKEADLKKSLLQKEKEEVNIIKSDLQKSLSSLDEKKKQVNCAKD 471
           E+   L+ + N+L   ++E D  +  LQ+  EE+  + + +    + ++E +++      
Sbjct: 392 EKLEKLKREINEL---KRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKAL 448

Query: 472 KLEAMKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAE 521
           +++  + +  +L+    K ++EL  ++ +   +  E  KLQ E A+ EA+
Sbjct: 449 EIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQ 498

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|237177 PRK12704, PRK12704, phosphodiesterase; Provisional

 Score = 53.2 bits (129), Expect = 5e-07
 Identities = 56/198 (28%), Positives = 89/198 (44%), Gaps = 44/198 (22%)

Query: 162 AQKKFAEAEAKLHAAESLQAEANRYHRSAERKLQEVV--AREDDLSRRIASFKADCEEKE 219
           A+ K  EAE +   A+ +  EA +    AE   +E +  A+E+    R         E E
Sbjct: 29  AEAKIKEAEEE---AKRILEEAKK---EAEAIKKEALLEAKEEIHKLR--------NEFE 74

Query: 220 REIIRERQSLSDRKKILQQEHERLLDAQTLLNEREDHILSKLQELSRKEKELEASRANVE 279
           +E+   R  L   +K L Q+ E L     LL +RE+ +  K +EL +K++ELE     +E
Sbjct: 75  KELRERRNELQKLEKRLLQKEENLDRKLELLEKREEELEKKEKELEQKQQELEKKEEELE 134

Query: 280 EKFKALNEEKSNLDLTLVSLLKREEAVIEREASLQKKEQKLLVSQETLASKESNEIQKII 339
           E  +   +E     L  +S L  EEA   +E  L+K E++                    
Sbjct: 135 ELIEEQLQE-----LERISGLTAEEA---KEILLEKVEEE-------------------- 166

Query: 340 ANHESALRVKQSEFEAEL 357
           A HE+A+ +K+ E EA+ 
Sbjct: 167 ARHEAAVLIKEIEEEAKE 184

Length = 520

>gnl|CDD|221432 pfam12128, DUF3584, Protein of unknown function (DUF3584)

 Score = 53.5 bits (129), Expect = 5e-07
 Identities = 94/579 (16%), Positives = 213/579 (36%), Gaps = 59/579 (10%)

Query: 180 QAEANRYHRSAERKLQEVVAREDDLSRRIASFKADCEEKEREIIRERQSLSDRKKILQQE 239
           Q   NR  +       ++    D+L++ +++  A       E+    + L D+K   +  
Sbjct: 287 QEAKNRLRQQLRTLEDQLKEARDELNQELSAANAKLAADRSEL----ELLEDQKGAFEDA 342

Query: 240 HERLLDAQTLLN--EREDHILSKLQELSRKEKELEASRANVEEKFKALNEEKSNLDLTLV 297
                D + L    ++   I S+L+E+  +   L     +V+ K++ L ++        +
Sbjct: 343 -----DIEQLQADLDQLPSIRSELEEVEARLDALTGKHQDVQRKYERLKQKIKEQLERDL 397

Query: 298 SLLKREEAVI---------EREASLQKKEQKLLVSQETLASKESNEIQKIIANHESA-LR 347
                  A I           E  LQ  E +L    E    + + E  ++         R
Sbjct: 398 EKNNERLAAIREEKDRQKAAIEEDLQALESQLRQQLEAGKLEFNEEEYELELRLGRLKQR 457

Query: 348 VKQSEFEAELAIKYKLAEDEIEKKRRAWELRDLDLGQREESLLEREHDLEVQSRALVDKE 407
           +  +    E   + ++ ++ +EK +   E  + ++ Q +  L +     +    AL   E
Sbjct: 458 LDSATATPEELEQLEINDEALEKAQEEQEQAEANVEQLQSELRQLRKRRDEALEALQRAE 517

Query: 408 KDLVERSHLLEEKENKLIA--------FEKEADLKKSLLQKEKEEVNIIKSDLQKSLSSL 459
           + L++    L+E E +L             EA   +  + K      + ++DL   L   
Sbjct: 518 RRLLQLRQALDELELQLSPQAGSLLHFLRNEAPGWEESIGKVISPELLERTDLDPQLVEG 577

Query: 460 DEKKK--QVNCAKDKLEAMKSEAGE------LSVLEIKLKEELDVVRAQKLELM---VET 508
            +      V+    +L+     A E      L   E  L+  +   +  + +L+    E 
Sbjct: 578 SDSDTLYGVSLDLQRLDVPDYAANETELRERLQQAEEALQSAVAKQKQAEEQLVQANAEL 637

Query: 509 DKLQLEKAKFEAEWEMIDEKREELRKEAERVAVERVVVSKSLKDERDSLRQERDAMRDQH 568
           ++ +  +A+     +      + L+ E +     +  +  ++ + +     +   +  Q 
Sbjct: 638 EEQKRAEAEARTALKQARLDLQRLQNEQQS---LKDKLELAIAERKQQAETQLRQLDAQL 694

Query: 569 KRDVDSLNREREEFMNKMVHEHSEWFTKIQQERADFLLGIEMQKRDLENCIEKRREELES 628
           K     L  +++ F+  +  +  E  T+   +       ++ Q   L   IE  R +   
Sbjct: 695 K----QLLEQQQAFLEALKDDFRELRTERLAKWQVVEGELDNQLAQLSAAIEAARTQA-- 748

Query: 629 SFREREKAFEEEKMREFQQISSLKEKAEKELEQVTLEIKRLDLERMEINMDRQRRDREWA 688
             + R K  +++  RE   +  +     KEL++   E++   +ER+ +     R  R + 
Sbjct: 749 --KARLKELKKQYDRELASL-DVDPNTVKELKRQIEELETT-IERIAVRRPEVREYRAF- 803

Query: 689 ELNNSIEELMVQRQKLEEQRQLLHADREEIQAESERLKK 727
                ++E  + R  L E+R  L     E+++ +E L++
Sbjct: 804 -----MQETWLHRDSLREERPNLAIQLRELESSAEELQQ 837

This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication. Length = 1198

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 52.8 bits (127), Expect = 9e-07
 Identities = 62/363 (17%), Positives = 147/363 (40%), Gaps = 23/363 (6%)

Query: 107  AEARKREESLKKTLGVEKECIASLEKAVHEIRAESAETKVAADSKFAEARCMVENAQKKF 166
               R+R E LK+ L   +  +  +E  + E+             + ++A   +   +K+ 
Sbjct: 677  QRLRERLEGLKRELSSLQSELRRIENRLDELS-----------QELSDASRKIGEIEKEI 725

Query: 167  AEAEAKLHAAESLQAEANRYHRSAERKLQEVVAREDDLSRRIASFKADCEEKEREIIRER 226
             + E +    +    E      S E++++ V +   +L  RI   + D  + E  +    
Sbjct: 726  EQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLE 785

Query: 227  QSLSDRK-KILQQEHERLLDAQTLLNEREDHILSKLQELSRKEKELEASRANVEEKFKAL 285
              LS  +   +Q E  +L +  + +  R   I  KL  L+ +++ LE     ++E+   L
Sbjct: 786  ARLSHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDL 845

Query: 286  NEEKSNLDLTLVSLLKREEAVIEREASLQKKEQKLLVSQETLASKESNEIQKIIANHESA 345
             E+  +++  + +L  ++E + E    L+   + L             +++K     E+ 
Sbjct: 846  KEQIKSIEKEIENLNGKKEELEEELEELEAALRDL--------ESRLGDLKKERDELEAQ 897

Query: 346  LRVKQSEFEAELAIKYKLAEDEIEKKRRAWELRDLDLGQREESLLEREHDLEVQS--RAL 403
            LR  + + E EL  + +     + + +   E  + +L + E+   E E   E +     +
Sbjct: 898  LRELERKIE-ELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGEDEEIPEEELSLEDV 956

Query: 404  VDKEKDLVERSHLLEEKENKLIAFEKEADLKKSLLQKEKEEVNIIKSDLQKSLSSLDEKK 463
              + + + E    LE      I   +E   +   L++++ ++   +  + + +   ++KK
Sbjct: 957  QAELQRVEEEIRALEPVNMLAIQEYEEVLKRLDELKEKRAKLEEERKAILERIEEYEKKK 1016

Query: 464  KQV 466
            ++V
Sbjct: 1017 REV 1019

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain

 Score = 52.3 bits (125), Expect = 1e-06
 Identities = 103/722 (14%), Positives = 247/722 (34%), Gaps = 27/722 (3%)

Query: 70  LILEKKELASKYEQIKASAEAAELLQKHDRASHLSAIAEARKREESLKKTLGVEKECIAS 129
           L +E++   S+ ++ K       + +  + A  +  + E + +E  LK+      E    
Sbjct: 157 LEIEEEAAGSREKRKKKERLKKLIEETENLAELIIDLEELKLQELKLKEQAKKALEYYQL 216

Query: 130 LEKA--------VHEIRAESAETKVAADSKFAEARCMVENAQKKFAEAEAKLHAAESLQA 181
            EK           +    + E          + +  +E+++++  + E  L        
Sbjct: 217 KEKLELEEENLLYLDYLKLNEERIDLLQELLRDEQEEIESSKQELEKEEEILAQVLKENK 276

Query: 182 EANRYHRSAERKLQEVVAREDDLSRRIASFKADCEEKEREIIRERQSLSDRKKILQQEHE 241
           E  +  +  E +L+ +   E++L   +   +    + E ++    + L   +K L++E E
Sbjct: 277 EEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKESEKELKKLEKELKKEKE 336

Query: 242 RLLDAQTLLNE----REDHILSKLQELSRKEKELEASRANVEEKFKALNEEKSNLDLTLV 297
            + + +  L E    RE     + Q    +EK  +     + +K        S   L   
Sbjct: 337 EIEELEKELKELEIKREAEEEEEEQLEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEE 396

Query: 298 SLLKREEAVIEREASLQKKEQKLLVSQETLASKESNEIQKIIANHESALRVKQSEFEAEL 357
            L  + E   E +  L+  EQ+  + +E    +     +   +      ++ + + E E 
Sbjct: 397 ELELKNEEEKEAKLLLELSEQEEDLLKEEKKEELKIVEELEESLETKQGKLTEEKEELEK 456

Query: 358 AIKYKLAEDEIEKKRRAWELRDLDLGQREESLLEREHDLEVQSRALVDKEKDLVERSHLL 417
                L +    KK          +   E+  L        ++     K ++ +     L
Sbjct: 457 QALKLLKDKLELKKSEDLLKETKLVKLLEQLELLLLRQKLEEASQKESKAREGLAVLLAL 516

Query: 418 EEKENKLIAFEKEADLKKSLLQKEKEEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEAMK 477
            +    L             +     +V I  + + +  +  DE  ++    +   E   
Sbjct: 517 IKDGVGLRIISAAGRGGDLGVAVANYKVAISVAVIVEVSAVADEVDERQKLVRALTELPL 576

Query: 478 SEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAE---------WEMIDEK 528
                 + + +    +L +     LE+    +  QL KA  EA+           ++ + 
Sbjct: 577 PAR---TFVLLDPLLKLPLKSIAVLEIDPALNLAQLNKATLEADEDDKRAKVVEGILKDT 633

Query: 529 REELRKEAERVAVERVVVSKSLKDERDSLRQERDAMRDQHKRDVDSLNREREEFMNKMVH 588
                 E+ +     +    SL++      + + ++ +  K  +     + +       +
Sbjct: 634 ELTKLLESAKAKESGLRKGVSLEEGLAEKSELKASLSELTKELLAEQELQEKAESELAKN 693

Query: 589 EHSEWFTKIQQERADFLLGIEMQKRDLENCIEKRREELE---SSFREREKAFEEEKMREF 645
           E      +I+++       ++  K + E  +  + +E +   +   +  +   +EK  E 
Sbjct: 694 EILRRQEEIKKKEQRIKEELKKLKLEKEELLADKVQEAQDKINEELKLLEQKIKEKEEEE 753

Query: 646 QQISSLKEKAEKELEQVTLEIKRLDLERMEINMDRQRRDREWAELNNSIEELMVQRQKLE 705
           ++    KE+ E+E  +++L+ K L  E  +    +   ++E        E   ++ +  E
Sbjct: 754 EKSRLKKEEEEEEKSELSLKEKELAEEEEKTEKLKVEEEKEEKLKAQEEELRALEEELKE 813

Query: 706 EQRQLLHADREEIQAESERLKKLEDLKIAVDYMAVSEMQRSRLEHSQKKISAKRHLNQQT 765
           E   L        Q E  + ++LE+L + +      E          ++   K  L Q+ 
Sbjct: 814 EAELLEEEQLLIEQEEKIKEEELEELALELKEEQKLEKLAEEELERLEEEITKEELLQEL 873

Query: 766 SL 767
            L
Sbjct: 874 LL 875

This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination. Length = 1162

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 52.0 bits (125), Expect = 2e-06
 Identities = 64/315 (20%), Positives = 133/315 (42%), Gaps = 25/315 (7%)

Query: 252 EREDHILSKLQELSRKEKELEASRANVEEKFKALNEEKSNLDLTLVSL----LKREEAVI 307
           E  + +   + E  ++ + L   R    E+++AL +EK   +   +      L+R++  I
Sbjct: 184 ENIERLDLIIDEKRQQLERLRRER-EKAERYQALLKEKREYEGYELLKEKEALERQKEAI 242

Query: 308 EREASLQKKEQKLLVSQETLASKESNEIQKIIANHESALRVKQSEFEAELAIKYKLAEDE 367
           ER+ +  ++E + L  + +   K   EI++++   E   ++K    E +L +K K+ E E
Sbjct: 243 ERQLASLEEELEKLTEEISELEKRLEEIEQLLE--ELNKKIKDLGEEEQLRVKEKIGELE 300

Query: 368 IEKKRRAWELRDLDLGQREESLLEREHDLEVQSRALVDKEKDLVERSHLLEEKENKLIAF 427
            E            L +          D E +        K   E   LL E E      
Sbjct: 301 AEIAS---------LERSIAEKERELEDAEERLA------KLEAEIDKLLAEIEELEREI 345

Query: 428 EKEADLKKSL---LQKEKEEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEAMKSEAGELS 484
           E+E   +  L     + KEE+  ++++L++      E + ++   ++KLE +K E  EL 
Sbjct: 346 EEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINELK 405

Query: 485 VLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVERV 544
               +L+EEL  +  +  +L      ++ +  + E E E    + ++   + E++A +  
Sbjct: 406 RELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLS 465

Query: 545 VVSKSLKDERDSLRQ 559
              + L D ++   +
Sbjct: 466 KYEQELYDLKEEYDR 480

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 52.0 bits (125), Expect = 2e-06
 Identities = 72/378 (19%), Positives = 151/378 (39%), Gaps = 46/378 (12%)

Query: 160  ENAQKKFAEAEAKLHAAESLQAEANRYHRSAERKLQEVVAREDDLSRRIASFKADCEEKE 219
             + Q +    E +L       ++A+R     E++++++   E+ L  R+   + D    E
Sbjct: 691  SSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLE 750

Query: 220  REIIRERQSLSDRKKILQQEHERLLDAQTLLNEREDHIL-SKLQELSRKEKELEASRANV 278
            +EI   +  L + +  +++  E L   +  LN+ E  +  S++ E              +
Sbjct: 751  QEIENVKSELKELEARIEELEEDLHKLEEALNDLEARLSHSRIPE--------------I 796

Query: 279  EEKFKALNEEKSNLDLTLVSLLKREEAVIEREASLQKKEQKLLVSQETLASKESNEIQKI 338
            + +   L EE S ++  L  + ++   +   +  L+K+ Q+L   +  L  +  +  ++I
Sbjct: 797  QAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEI 856

Query: 339  IANHESALRVKQSEFEAELAIKYKLAEDEIEKKRRAWELRDLDLGQREESLLEREHDLEV 398
                   L  K+ E E EL  + + A  ++E +          LG  ++   E E  L  
Sbjct: 857  -----ENLNGKKEELEEELE-ELEAALRDLESR----------LGDLKKERDELEAQLRE 900

Query: 399  QSRALVDKEKDLVERSHLLEEKENKLIAFEKEADLKKSLLQKEKEEVNIIKSDLQKSLSS 458
              R + + E  + ++   L E + KL A          L ++  E  +    D +     
Sbjct: 901  LERKIEELEAQIEKKRKRLSELKAKLEA----------LEEELSEIEDPKGEDEEIPEEE 950

Query: 459  LDEKKKQVNCAKDKLEAMKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKF 518
            L  +  Q      ++E        +++L I   +E + V  +  EL  +  KL+ E+   
Sbjct: 951  LSLEDVQAEL--QRVEEEIRALEPVNMLAI---QEYEEVLKRLDELKEKRAKLEEERKAI 1005

Query: 519  EAEWEMIDEKREELRKEA 536
                E  ++K+ E+  EA
Sbjct: 1006 LERIEEYEKKKREVFMEA 1023

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 51.6 bits (124), Expect = 2e-06
 Identities = 74/392 (18%), Positives = 163/392 (41%), Gaps = 31/392 (7%)

Query: 251  NEREDHILSKLQELSRKEKELEASRANVEEKFKALNEEKSNLD--LTLVSLLKREEAVIE 308
             +    IL + +E+   E+++E     + E  KAL E +  L+     +  L++E   + 
Sbjct: 666  AKTNSSILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELS 725

Query: 309  REASLQKKEQKLLVSQETLASKESNEIQKIIANHESALRVKQSEFEAELAIKYKLAEDEI 368
            R+ S  +K+   L ++     +   ++ K +   E A   +  E   E   +   AE EI
Sbjct: 726  RQISALRKDLARLEAEVEQLEERIAQLSKELTELE-AEIEELEERLEEAEEELAEAEAEI 784

Query: 369  EKKRRAWELRDLDLGQREESLLEREHDLEVQSRALVDKEKDLVERSHLLEEKENKLIAFE 428
            E+        +  + Q +E L      L+     L    ++       LE  E ++ A E
Sbjct: 785  EE-------LEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATE 837

Query: 429  KEADLKKSLLQKEKEEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEAMKSEAGELSVLEI 488
            +  +  +  +++  E++  + +++++    ++E + ++    ++  +++     L     
Sbjct: 838  RRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELE 897

Query: 489  KLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWE----MIDEKREELRKEAERVAVERV 544
            +L EEL  + +++ EL  E ++L+ + A+ E   E     ID  +E L +E         
Sbjct: 898  ELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLSEEYSLTL---- 953

Query: 545  VVSKSLKDERDSLRQERDAMRDQHKRDVDSLNREREEFMNKMVHEHSEWFTKIQQERADF 604
                   +E ++L  + +   ++ +R +  L  + +E     V+  +    +  +ER DF
Sbjct: 954  -------EEAEALENKIEDDEEEARRRLKRLENKIKELGP--VNLAAIEEYEELKERYDF 1004

Query: 605  LLG----IEMQKRDLENCIEKRREELESSFRE 632
            L      +   K  LE  IE+   E    F++
Sbjct: 1005 LTAQKEDLTEAKETLEEAIEEIDREARERFKD 1036

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 51.3 bits (123), Expect = 3e-06
 Identities = 60/285 (21%), Positives = 119/285 (41%), Gaps = 16/285 (5%)

Query: 55  KLETEIFEHQHHMGLLILEKKELASKYEQIKA--------SAEAAELLQKHDR--ASHLS 104
           +L+ E+ E +    LL+ + KEL  + E+++           E  E L++ ++      S
Sbjct: 217 ELKAELRELEL--ALLLAKLKELRKELEELEEELSRLEEELEELQEELEEAEKEIEELKS 274

Query: 105 AIAEARKREESLKKTLGVEKECIASLEKAVHEIRAESAETKVAADSKFAEARCMVENAQK 164
            + E R+  E L++ L   KE I  LE  +  +R    E +   +         +E  ++
Sbjct: 275 ELEELREELEELQEELLELKEEIEELEGEISLLRERLEELENELEELEER----LEELKE 330

Query: 165 KFAEAEAKLHAAESLQAEANRYHRSAERKLQEVVAREDDLSRRIASFKADCEEKEREIIR 224
           K    + +L   E+L  E  +     E   +E+  +   L   +        E+  E+  
Sbjct: 331 KIEALKEELEERETLLEELEQLLAELEEAKEELEEKLSALLEELEELFEALREELAELEA 390

Query: 225 ERQSLSDRKKILQQEHERLLDAQTLLNEREDHILSKLQELSRKEKELEASRANVEEKFKA 284
           E   + +  + L++E E L +    L+ER + +  +L+EL  + +EL+     + E+ + 
Sbjct: 391 ELAEIRNELEELKREIESLEERLERLSERLEDLKEELKELEAELEELQTELEELNEELEE 450

Query: 285 LNEEKSNLDLTLVSLLKREEAVIEREASLQKKEQKLLVSQETLAS 329
           L E+   L   L  L +    + E    L+K+   L    + L +
Sbjct: 451 LEEQLEELRDRLKELERELAELQEELQRLEKELSSLEARLDRLEA 495

Length = 1163

>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]

 Score = 50.9 bits (122), Expect = 3e-06
 Identities = 119/601 (19%), Positives = 246/601 (40%), Gaps = 52/601 (8%)

Query: 219 EREIIRERQSLSDRKKILQQEHERLLDAQTLLNEREDHIL------------------SK 260
           ERE  R R   +   +I++ + ER+ D +  +NE+ + +L                    
Sbjct: 88  EREFRRGRGQSTGSLQIIEVDGERIADGKKDVNEKIEELLGLDKDTFTRSVYLPQGEFDA 147

Query: 261 LQELSRKEKE-----------LEASRANVEEKFKALNEEKSNLDLTLVSLLKREEAVIER 309
             +   KE++            E     ++E  K    +   L+  L  LL+  E ++E 
Sbjct: 148 FLKSKPKERKEILDELFGLEKYEKLSELLKEVIKEAKAKIEELEGQLSELLEDIEDLLEA 207

Query: 310 -EASLQKKEQKLLVSQETLASKESNEIQKIIANHESALRVKQSEFEAELAIKYKLAEDEI 368
            E  L++ ++   + +E    +   EI+ +          K+   E +  +    + +  
Sbjct: 208 LEEELKELKKLEEIQEEQEEEELEQEIEALEERLAELEEEKERLEELKARLLEIESLELE 267

Query: 369 EKKRRAWELRDLD-----LGQREESLLEREHDLEVQSRALVDKEKDLVERSHLLEEKENK 423
             K R  ELR+L+     L ++ E L E E ++E     L      L E   LLE+ ++ 
Sbjct: 268 ALKIREEELRELERLLEELEEKIERLEELEREIEELEEELEGLRALLEELEELLEKLKSL 327

Query: 424 LIAFEKEADLKKSL------LQKEKEEVNIIKSDLQKSLSS-LDEKKKQVNCAKDKLEAM 476
               EK  +  + L      L +EK E+  +  +  K L   L+E +K++  A ++L+ +
Sbjct: 328 EERLEKLEEKLEKLESELEELAEEKNELAKLLEERLKELEERLEELEKELEKALERLKQL 387

Query: 477 KSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEA 536
           +    EL     +L   L+ ++ +  EL  E ++L+ E  + E E + ++E+  +L  + 
Sbjct: 388 EEAIQELKEELAELSAALEEIQEELEELEKELEELERELEELEEEIKKLEEQINQLESKE 447

Query: 537 ERVAVERVVVSKSLKDERDSLRQERDAMRDQHKRDVDSLNREREEFM--NKMVHEHSEWF 594
             +A       K     ++   +    + + ++ +++ L  E        ++  E  E  
Sbjct: 448 LMIAELAGAGEKCPVCGQELPEEHEKELLELYELELEELEEELSREKEEAELREEIEELE 507

Query: 595 TKIQ---QERADFLLGIEMQKRDLENCIEKRREELESSFREREKAFEEEKMREFQQISSL 651
            +++   +E  + L   E  K +LE  +EK    LE     +EK   ++   E +Q+   
Sbjct: 508 KELRELEEELIELLELEEALKEELEEKLEKLENLLEELEELKEKLQLQQLKEELRQLEDR 567

Query: 652 KEKAEKELEQVTLEIKRLDLERMEINMDRQRRDREWAELNNSIEELMVQRQKLEEQRQLL 711
            ++ ++ LE++ L   R +        + + R +E  +    +EE + Q ++L +  +L 
Sbjct: 568 LQELKELLEELRLLRTRKEELE-----ELRERLKELKKKLKELEERLSQLEELLQSLELS 622

Query: 712 HADREEIQAESERLKKLEDLKIAVDYMAVSEMQRSRLEHSQKKISAKRHLNQQTSLAHAD 771
            A+ E  +AE E   +LE L +  +   + +     LE   +++ A+     Q       
Sbjct: 623 EAENELEEAEEELESELEKLNLQAELEELLQAALEELEEKVEELEAEIRRELQRIENEEQ 682

Query: 772 L 772
           L
Sbjct: 683 L 683

Length = 908

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 51.2 bits (123), Expect = 3e-06
 Identities = 86/426 (20%), Positives = 166/426 (38%), Gaps = 64/426 (15%)

Query: 301  KREEAVIEREASLQKKEQKLLVSQETLASKESNEIQKIIANHESALRVKQSEFEAELAIK 360
            K   +++ER   +++ E+K+   +E +A  E              LR +  E E EL   
Sbjct: 667  KTNSSILERRREIEELEEKIEELEEKIAELEKALA---------ELRKELEELEEELE-- 715

Query: 361  YKLAEDEIEKKRRAWELRDLDLGQREESLLEREHDLEVQSRALVDKEKDLVERSHLLEEK 420
                  E+E+  R       DL + E  + + E  +   S+ L + E ++ E    LEE 
Sbjct: 716  --QLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEA 773

Query: 421  ENKLIAFEKEADLKKSLLQKEKEEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEAMKSEA 480
            E +L   E E +  ++ +++ KEE+  ++  L +  + L    ++    +++LE+++   
Sbjct: 774  EEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRI 833

Query: 481  GELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVA 540
                     L+E+++ +      L  E ++L+    + E+E E +  +R  L +      
Sbjct: 834  AATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALA--- 890

Query: 541  VERVVVSKSLKDERDSLRQERDAMRDQHKRDVDSLNREREEFMNKMVHEHSEWFTKIQQE 600
                     L+ E + L +E   +  +       L RE EE   K+              
Sbjct: 891  --------LLRSELEELSEELRELESK----RSELRRELEELREKLAQLELRL------- 931

Query: 601  RADFLLGIEMQKRDLENCIEKRREELESSFREREKAFEEEKMREFQQISSLKEKAEKELE 660
                              +E R + L+    E      EE      +I   +E+A + L+
Sbjct: 932  ----------------EGLEVRIDNLQERLSEEYSLTLEEAEALENKIEDDEEEARRRLK 975

Query: 661  QVTLEIKRL---DLERMEINMDRQRRDREWAELNNSIEELMVQRQKLEEQRQLLHADREE 717
            ++  +IK L   +L  +E          E+ EL    + L  Q++ L E ++ L    EE
Sbjct: 976  RLENKIKELGPVNLAAIE----------EYEELKERYDFLTAQKEDLTEAKETLEEAIEE 1025

Query: 718  IQAESE 723
            I  E+ 
Sbjct: 1026 IDREAR 1031

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional

 Score = 50.8 bits (122), Expect = 4e-06
 Identities = 111/536 (20%), Positives = 222/536 (41%), Gaps = 63/536 (11%)

Query: 147 AADSKFAEARCMVENAQKKFAEAEAKLHAAESLQAEANRYHRSAERKLQEVVAREDDLSR 206
             +S+ AE    +E  +++  +A      A+ +  E    H     +L+ + A  +DL  
Sbjct: 210 GLESELAELDEEIERYEEQREQARETRDEADEVLEE----HEERREELETLEAEIEDLRE 265

Query: 207 RIASFKADCEEKEREIIRER-QSLSDRKKILQQEHERLLDAQTLLNEREDHILSKLQELS 265
            IA       E+ERE + E  + L +R + L++E + LL    L +   + + ++ +EL 
Sbjct: 266 TIAE-----TEREREELAEEVRDLRERLEELEEERDDLLAEAGLDDADAEAVEARREELE 320

Query: 266 RKEKELEASRANVEEKFKALNEEKSNLDLTLVSLLKREEAVIEREASLQKKEQKLLVSQE 325
            +++EL           +A NEE  +L         RE+A    E + + +E        
Sbjct: 321 DRDEELRDRLEECRVAAQAHNEEAESL---------REDADDLEERAEELRE-------- 363

Query: 326 TLASKESNEIQKIIANHESALRVKQSEFEAELAIKYKLAEDEIEKKRRAWELRDLDLGQR 385
                E+ E++  +     A+  ++ E E          E+EIE+ R  +    +DLG  
Sbjct: 364 -----EAAELESELEEAREAVEDRREEIEE--------LEEEIEELRERFGDAPVDLGNA 410

Query: 386 EESLLEREHDLEVQSRALVDKEKDLVERSHLLEEKENKLIAF---EKEADLKKSLLQKEK 442
           E+ L E   + +       + E  L      +EE E  L A    E    ++ S   +  
Sbjct: 411 EDFLEELREERDELREREAELEATLRTARERVEEAEALLEAGKCPECGQPVEGSPHVETI 470

Query: 443 EEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEAMKSEAGELSVLEIKLKEELDVVRAQKL 502
           EE      +L+  L  L+E+ ++V    ++ E +      +  LE + ++  +++  ++ 
Sbjct: 471 EEDRERVEELEAELEDLEEEVEEVEERLERAEDLVEAEDRIERLEERREDLEELIAERRE 530

Query: 503 ELMVETDK---LQLEKAKFEAEWEMIDEKREELRKEAERVAVERVVVSK---SLKDERDS 556
            +  + ++   L+   A+ EAE E   E   E  +EAE    E   ++     LK+  +S
Sbjct: 531 TIEEKRERAEELRERAAELEAEAEEKREAAAEAEEEAEEAREEVAELNSKLAELKERIES 590

Query: 557 LR--QERDAMRDQHKRDVDSLNREREEFMNKMVHEHSEWFTKIQQERADFLLGIEMQKRD 614
           L   +   A     + +++ L  +RE               ++  ER + L     +KR+
Sbjct: 591 LERIRTLLAAIADAEDEIERLREKREAL------------AELNDERRERLAEKRERKRE 638

Query: 615 LENCIEKRREELESSFREREKAFEEEKMREFQQISSLKEKAEKELEQVTLEIKRLD 670
           LE   ++ R E     +ER + + E+   +  ++   ++  + E+  V  E++ L+
Sbjct: 639 LEAEFDEARIEEAREDKERAEEYLEQVEEKLDELREERDDLQAEIGAVENELEELE 694

Length = 880

>gnl|CDD|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain

 Score = 50.7 bits (121), Expect = 4e-06
 Identities = 97/672 (14%), Positives = 217/672 (32%), Gaps = 21/672 (3%)

Query: 73  EKKELASKYEQIKASAEAAELLQKHDRASHLSAIAEARKREESLKKTLGVEKECIASLEK 132
            ++E      + +   ++  L  +  +      + E+ K  + L+K L  EKE I  LEK
Sbjct: 284 LQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKESEKELKKLEKELKKEKEEIEELEK 343

Query: 133 AVHEIRAESAETKVAADSKFAEARCMVENAQKKFAEAEAKLHAAESLQAEANRYHRSAER 192
            + E+             K        E  +K   + E       + +   +    SA +
Sbjct: 344 ELKELEI-----------KREAEEEEEEQLEKLQEKLEQLEEELLAKKKLESERLSSAAK 392

Query: 193 KLQEVVAREDDLSRRIASFKADCEEKEREIIRERQSLSDRKKILQQEHERLLDAQTLLNE 252
             +E +  +++  +         E++E  +  E++      + L++  E      T   E
Sbjct: 393 LKEEELELKNEEEKEAKLLLELSEQEEDLLKEEKKEELKIVEELEESLETKQGKLTEEKE 452

Query: 253 REDHILSKLQELSRKEKELEASRANVEEKFKALNEEKSNLDLTLVSLLKREEAVIEREAS 312
             +    KL +   + K+ E      +        E   L   L    ++E    E  A 
Sbjct: 453 ELEKQALKLLKDKLELKKSEDLLKETKLVKLLEQLELLLLRQKLEEASQKESKAREGLAV 512

Query: 313 LQKKEQKLLVSQETLASKESNEIQKIIANHESALRVKQSEFEAELAIKYKLAEDEIEKKR 372
           L    +  +  +   A+    ++   +AN++    V  S              DE +K  
Sbjct: 513 LLALIKDGVGLRIISAAGRGGDLGVAVANYK----VAISVAVIVEVSAVADEVDERQKLV 568

Query: 373 RAWELRDLDLGQRE---ESLLEREHDLEVQSRALVDKEKDLVERSHLLEEKENKLIAFEK 429
           RA     L           L      + V           L + +   +E + +    E 
Sbjct: 569 RALTELPLPARTFVLLDPLLKLPLKSIAVLEIDPALNLAQLNKATLEADEDDKRAKVVEG 628

Query: 430 EADLKKSLLQKEKEEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEAMKSEAGELSVLEIK 489
                +     E  +          SL     +K ++  +  +L        EL      
Sbjct: 629 ILKDTELTKLLESAKAKESGLRKGVSLEEGLAEKSELKASLSELTKELLAEQELQEKAES 688

Query: 490 LKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVERVVVSKS 549
              + +++R Q+     E    +  K     + E++ +K +E + +            K 
Sbjct: 689 ELAKNEILRRQEEIKKKEQRIKEELKKLKLEKEELLADKVQEAQDKINEELKLLEQKIKE 748

Query: 550 LKDERDSLRQERDAMRDQHKRDVDSLNREREEFMNKMVHEHSEWFTKIQQERADFLLGIE 609
            ++E +  R +++   ++            EE       +  E   +  + + + L  +E
Sbjct: 749 KEEEEEKSRLKKEEEEEEKSELSLKEKELAEEEEKTEKLKVEEEKEEKLKAQEEELRALE 808

Query: 610 MQKRDLENCIEKRREELESSFREREKAFEEEKMREFQQISSLKEKAEK---ELEQVTLEI 666
            + ++    +E+ +  +E   + +E+  EE  +   ++    K   E+     E++T E 
Sbjct: 809 EELKEEAELLEEEQLLIEQEEKIKEEELEELALELKEEQKLEKLAEEELERLEEEITKEE 868

Query: 667 KRLDLERMEINMDRQRRDREWAELNNSIEELMVQRQKLEEQRQLLHADREEIQAESERLK 726
              +L   E  ++ Q+   E        +E   + ++  ++  LL     EI+       
Sbjct: 869 LLQELLLKEEELEEQKLKDELESKEEKEKEEKKELEEESQKDNLLEEKENEIEERIAEEA 928

Query: 727 KLEDLKIAVDYM 738
            +     +    
Sbjct: 929 IILLKYESEPEE 940

This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination. Length = 1162

>gnl|CDD|221432 pfam12128, DUF3584, Protein of unknown function (DUF3584)

 Score = 50.5 bits (121), Expect = 5e-06
 Identities = 136/708 (19%), Positives = 264/708 (37%), Gaps = 80/708 (11%)

Query: 73  EKKELASKYEQIKASAEAAELLQKHDRASHLSAIAEARKREESLKKTLGVEKECIASLEK 132
           E ++L   +EQ+ +     + L     A     +AE ++  +  K  L   ++ + +LE 
Sbjct: 247 EIEKLQEDFEQLLSLELRLQHLHGELVA-DEERLAEEQEERQEAKNRL---RQQLRTLED 302

Query: 133 AVHEIRAESAETKVAADSKFAEARCMVENAQ--------KKFAEAEAKLHAAESLQAEAN 184
            + E R E  +   AA++K A  R  +E  +            + +A L    S+++E  
Sbjct: 303 QLKEARDELNQELSAANAKLAADRSELELLEDQKGAFEDADIEQLQADLDQLPSIRSELE 362

Query: 185 RYHRSAERKLQEVVAREDDLSRRIASFKADCEEKEREIIRERQSLSDRKKILQQEHERLL 244
                 +    +    +    R     K   E    +      ++ + K   +   E  L
Sbjct: 363 EVEARLDALTGKHQDVQRKYERLKQKIKEQLERDLEKNNERLAAIREEKDRQKAAIEEDL 422

Query: 245 DAQTL-LNEREDHILSKLQELSRKEKELEASRANVEEK-FKALNEEKSNLDLTLVSLLKR 302
            A    L ++ +    +  E    E EL   R         A  EE   L++   +L K 
Sbjct: 423 QALESQLRQQLEAGKLEFNE-EEYELELRLGRLKQRLDSATATPEELEQLEINDEALEKA 481

Query: 303 EEAVIEREASLQKKEQKLLVSQETLASKESNEIQKIIANHESALR-VKQSEFEAELAIKY 361
           +E     E +    EQ  L S+     K  +E  + +   E  L  ++Q+  E EL +  
Sbjct: 482 QEEQ---EQAEANVEQ--LQSELRQLRKRRDEALEALQRAERRLLQLRQALDELELQLSP 536

Query: 362 K-------------LAEDEIEKKRRAWELRDLDL------GQREESLLEREHDLE-VQSR 401
           +               E+ I K      L   DL      G   ++L     DL+ +   
Sbjct: 537 QAGSLLHFLRNEAPGWEESIGKVISPELLERTDLDPQLVEGSDSDTLYGVSLDLQRLDVP 596

Query: 402 ALVDKEKDLVERSHLLEEKENKLIAFEKEADLKKSLLQKEKEEVNIIKSDLQKSLSSLDE 461
                E +L ER    EE     +A +K+A+ +      E EE        +++ +    
Sbjct: 597 DYAANETELRERLQQAEEALQSAVAKQKQAEEQLVQANAELEE-------QKRAEAEART 649

Query: 462 KKKQVNCAKDKLEAMKSEAGELSV-LEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEA 520
             KQ   A+  L+ +++E   L   LE+ + E       Q  +L  +  +L  ++     
Sbjct: 650 ALKQ---ARLDLQRLQNEQQSLKDKLELAIAERKQQAETQLRQLDAQLKQLLEQQQ---- 702

Query: 521 EWEMIDEKREELRKEAERVAVERVVVSKSLKDERDSLRQERDAMRDQHKRDVDSLNRER- 579
               ++  +++ R+       +  VV   L ++   L    +A R Q K  +  L ++  
Sbjct: 703 --AFLEALKDDFRELRTERLAKWQVVEGELDNQLAQLSAAIEAARTQAKARLKELKKQYD 760

Query: 580 EEFMNKMVHEHSEWFTKIQQERADFLLGIEMQKRDLENCIEKRRE--ELESSFRER---E 634
            E  +  V        +++++  +        +  +E    +R E  E  +  +E     
Sbjct: 761 RELASLDVDP--NTVKELKRQIEEL-------ETTIERIAVRRPEVREYRAFMQETWLHR 811

Query: 635 KAFEEEKMREFQQISSLKEKAEKELEQVTLEIKRLDLERMEINMDRQRRDREWAELNNSI 694
            +  EE+     Q+  L+  AE+  +++T  IK   L R ++  +R+  +++  +L+  +
Sbjct: 812 DSLREERPNLAIQLRELESSAEELQQELTRLIKDTKLRRKKLEQERKALEKQLDQLDELL 871

Query: 695 EELMVQRQKLEEQRQLLHADREEIQAE---SERLKKLEDLKIAVDYMA 739
             L  + ++L E    L       QAE   SERL +LE+ K     ++
Sbjct: 872 RGLRDEMRQLAE----LKEPANANQAEGSISERLDQLEEFKRKRKRLS 915

This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication. Length = 1198

>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional

 Score = 49.3 bits (118), Expect = 1e-05
 Identities = 108/506 (21%), Positives = 217/506 (42%), Gaps = 38/506 (7%)

Query: 38  EVSIKRRDKAALIAYIAKLETEIFEHQHHMGLLILEKKELASKYEQIKASAEAAELLQKH 97
           E+    ++  +L     KLE +I E +  +  L  E +EL  K +++K      EL +K 
Sbjct: 239 EIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELK------ELKEKA 292

Query: 98  DRASHLSAI-AEARKREESLKKTLGVEKECIASLEKAVHEIRAESAETKVAADSKFAEAR 156
           +    LS    E       ++K L   +E I  +E+     R +  E K     +  +  
Sbjct: 293 EEYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEE-----RIKELEEKEERLEELKKKL 347

Query: 157 CMVENAQKKFAEAEAKLHAAESLQAEANRYH-RSAERKLQEVVAREDDLSRRIASFKADC 215
             +E   ++  E       A++ + E  R   R      +++    ++L +     K + 
Sbjct: 348 KELEKRLEELEERHELYEEAKAKKEELERLKKRLTGLTPEKLEKELEELEKA----KEEI 403

Query: 216 EEKEREIIRERQSLSDRKKILQQEHERLLDAQTLL-----NEREDHILSKLQELSRKEKE 270
           EE+  +I      L    K L++  E L  A+           E+H    L+E + + K 
Sbjct: 404 EEEISKITARIGELKKEIKELKKAIEELKKAKGKCPVCGRELTEEHRKELLEEYTAELKR 463

Query: 271 LEASRANVEEKFKALNEEKSNLDLTLV--SLLKREEAVIEREASLQKKEQKLLVSQETLA 328
           +E     +EEK + L +E   L+  L   S L + + + E+   L++K +K  + +    
Sbjct: 464 IEKELKEIEEKERKLRKELRELEKVLKKESELIKLKELAEQLKELEEKLKKYNLEELEKK 523

Query: 329 SKESNEIQKIIANHESALRVKQSEFEAELAIKYKLAEDEIEKKRRAWELRDLDLGQREES 388
           ++E  ++++ +   +  ++  + E E    +K KLAE E +              + EE 
Sbjct: 524 AEEYEKLKEKLIKLKGEIKSLKKELEKLEELKKKLAELEKKLD------------ELEEE 571

Query: 389 LLEREHDLEVQSRALVDKEKDLVERSHLLEEKENKLIAFEKEADLKKSLLQKEKEEVNII 448
           L E   +LE      V++ ++ ++       +  +L   EKE + ++  L+K +EE++  
Sbjct: 572 LAELLKELEELGFESVEELEERLKELEPFYNEYLELKDAEKELEREEKELKKLEEELDKA 631

Query: 449 KSDLQKSLSSLDEKKKQVNCAKDKLEAMKSEAGELSVLEIKLKEELDVVRAQKLELMVET 508
             +L ++   L+E +K++   + K    + E  EL    ++L  EL  +RA+  EL    
Sbjct: 632 FEELAETEKRLEELRKELEELEKKYS--EEEYEELREEYLELSRELAGLRAELEELEKRR 689

Query: 509 DKLQLEKAKFEAEWEMIDEKREELRK 534
           ++++    K + E E  ++ ++EL K
Sbjct: 690 EEIKKTLEKLKEELEEREKAKKELEK 715

Length = 880

>gnl|CDD|237177 PRK12704, PRK12704, phosphodiesterase; Provisional

 Score = 47.9 bits (115), Expect = 2e-05
 Identities = 45/161 (27%), Positives = 83/161 (51%), Gaps = 23/161 (14%)

Query: 340 ANHESALRVKQSEFEAELAIKYKL--AEDEIEKKRRAWELRDLDLGQREESLLEREHDLE 397
           A  E+   +++++ EAE   K  L  A++EI K R  +E          + L ER ++L+
Sbjct: 36  AEEEAKRILEEAKKEAEAIKKEALLEAKEEIHKLRNEFE----------KELRERRNELQ 85

Query: 398 VQSRALVDKEKDLVERSHLLEEKENKLIAFEKEADLKKSLLQKEKEEVNIIKSDLQKSLS 457
              + L+ KE++L  +  LLE++E +L   EKE + K+  L+K++EE+  +  +  + L 
Sbjct: 86  KLEKRLLQKEENLDRKLELLEKREEELEKKEKELEQKQQELEKKEEELEELIEEQLQELE 145

Query: 458 SL-----DEKKKQVNCAKDKLEAMKSEAGELSVLEIKLKEE 493
            +     +E K+ +      LE ++ EA   + + IK  EE
Sbjct: 146 RISGLTAEEAKEIL------LEKVEEEARHEAAVLIKEIEE 180

Length = 520

>gnl|CDD|188306 TIGR03319, RNase_Y, ribonuclease Y

 Score = 48.4 bits (116), Expect = 2e-05
 Identities = 55/197 (27%), Positives = 86/197 (43%), Gaps = 44/197 (22%)

Query: 162 AQKKFAEAEAKLHAAESLQAEANRYHRSAERKLQEVV--AREDDLSRRIASFKADCEEKE 219
           A+KK   AE     A+ +  EA    + AE   +E +  A+E+    R         E E
Sbjct: 23  AEKKLGSAEEL---AKRIIEEA---KKEAETLKKEALLEAKEEVHKLR--------AELE 68

Query: 220 REIIRERQSLSDRKKILQQEHERLLDAQTLLNEREDHILSKLQELSRKEKELEASRANVE 279
           RE+   R  L   ++ L Q  E L      L+++E+++  K +ELS KEK L+     +E
Sbjct: 69  RELKERRNELQRLERRLLQREETLDRKMESLDKKEENLEKKEKELSNKEKNLDEKEEELE 128

Query: 280 EKFKALNEEKSNLDLTLVSLLKREEAVIEREASLQKKEQKLLVSQETLASKESNEIQKII 339
           E      EE     L  +S L +EEA   +E  L++ E++                    
Sbjct: 129 ELIAEQREE-----LERISGLTQEEA---KEILLEEVEEE-------------------- 160

Query: 340 ANHESALRVKQSEFEAE 356
           A HE+A  +K+ E EA+
Sbjct: 161 ARHEAAKLIKEIEEEAK 177

Members of this family are RNase Y, an endoribonuclease. The member from Bacillus subtilis, YmdA, has been shown to be involved in turnover of yitJ riboswitch [Transcription, Degradation of RNA]. Length = 514

>gnl|CDD|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain

 Score = 47.7 bits (113), Expect = 4e-05
 Identities = 111/711 (15%), Positives = 266/711 (37%), Gaps = 24/711 (3%)

Query: 23  SDESIWKRLKEAGLDEVSIKRRDKAALIAYIAKLETEIFEHQHHMGLLILEKKELASKYE 82
           S+    +R K    +++    ++   L   + K + EI E +        E KEL  K E
Sbjct: 301 SELLKLERRKVDDEEKLKESEKELKKLEKELKKEKEEIEELEK-------ELKELEIKRE 353

Query: 83  QIKASAEAAELLQKHDRASHLSAIAEARKREESLKKTLGVEKECIASLEKAVHEIRAESA 142
             +   E  E LQ+         +A+ +   E L     +++E +    +   E +    
Sbjct: 354 AEEEEEEQLEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEEELELKNEEEKEAKLLLE 413

Query: 143 ETKVAADSKFAEARCMVENAQKKFAEAEAKLHAAESLQAEANRYHRSAERKLQEVVARED 202
            ++   D    E        +++    E    + E+ Q +        E++  +++  + 
Sbjct: 414 LSEQEEDLLKEE-------KKEELKIVEELEESLETKQGKLTEEKEELEKQALKLLKDKL 466

Query: 203 DLSRRIASFKADCEEKEREIIRERQSLSDRKKILQQEHERLLDAQTLLNEREDHILSKLQ 262
           +L +     K     K  E +         ++  Q+E +       LL   +D +  ++ 
Sbjct: 467 ELKKSEDLLKETKLVKLLEQLELLLLRQKLEEASQKESKAREGLAVLLALIKDGVGLRII 526

Query: 263 ELSRKEKELEASRANVEEK----FKALNEEKSNLDLTLVSLLKREEAVIEREASLQKKEQ 318
             + +  +L  + AN +              ++       L++    +     +    + 
Sbjct: 527 SAAGRGGDLGVAVANYKVAISVAVIVEVSAVADEVDERQKLVRALTELPLPARTFVLLDP 586

Query: 319 KLLVSQETLASKESNEIQKIIANHESALRVKQSEFEAELAIKYKLAEDEIEKKRRAWELR 378
            L +  +++A  E +    +   +++ L   + +  A++       +D    K       
Sbjct: 587 LLKLPLKSIAVLEIDPALNLAQLNKATLEADEDDKRAKVVEGI--LKDTELTKLLESAKA 644

Query: 379 DLDLGQREESLLEREHDLEVQSRALVDKEKDLVERSHLLEEKENKLIAFEKEADLKKSLL 438
                ++  SL E   +      +L +  K+L+    L E+ E++L   E     ++   
Sbjct: 645 KESGLRKGVSLEEGLAEKSELKASLSELTKELLAEQELQEKAESELAKNEILRRQEEIKK 704

Query: 439 QKEKEEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEAMKSEAGELSVLEIKLKEELDVVR 498
           ++++ +  + K  L+K     D+ ++  +   ++L+ ++ +  E    E K + + +   
Sbjct: 705 KEQRIKEELKKLKLEKEELLADKVQEAQDKINEELKLLEQKIKEKEEEEEKSRLKKEEEE 764

Query: 499 AQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVERVVVSKSLKDERDSLR 558
            +K EL ++  +L  E+ K E      +++ +   +E E  A+E  +  ++   E + L 
Sbjct: 765 EEKSELSLKEKELAEEEEKTEKLKVEEEKEEKLKAQEEELRALEEELKEEAELLEEEQLL 824

Query: 559 QERDAMRDQHKRDVDSLNREREEFMNKMVHEHSEWFTKIQQERADFLLGIEMQKRDLENC 618
            E++    + + +  +L  + E+ + K+  E  E   +   +       +  ++   E  
Sbjct: 825 IEQEEKIKEEELEELALELKEEQKLEKLAEEELERLEEEITKEELLQELLLKEEELEEQK 884

Query: 619 IEKRREELESSFREREKAFEEEKMREFQQISSLKEKAEKELEQVTLEIKRLDLERMEINM 678
           ++   E  E    E+EK  ++E   E Q+ + L+EK  +  E++  E   L     E   
Sbjct: 885 LKDELESKE----EKEKEEKKELEEESQKDNLLEEKENEIEERIAEEAIILLKYESEPEE 940

Query: 679 DRQRRDREWAELNNSIEELMVQRQKLEEQRQLLHADREEIQAESERLKKLE 729
                  E  +  ++ EE   + ++L   ++ L        AE E  ++  
Sbjct: 941 LLLEEADEKEKEEDNKEEEEERNKRLLLAKEELGNVNLMAIAEFEEKEERY 991

This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination. Length = 1162

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 47.4 bits (113), Expect = 5e-05
 Identities = 64/323 (19%), Positives = 131/323 (40%), Gaps = 41/323 (12%)

Query: 261 LQELSRKEKELEASRANVEEKFKALNEEKSNLDLTLVSLLKREEAVIEREASLQKKEQKL 320
           L EL R+ K LE  +A   E++K L  E   L+L L  +L+ EE   E E   ++ ++  
Sbjct: 195 LNELERQLKSLER-QAEKAERYKELKAELRELELAL-LVLRLEELREELEELQEELKE-- 250

Query: 321 LVSQETLASKESNEIQKIIANHESALRVKQSEFEAELAIKYKLAEDEIEKKRRAWELRDL 380
              +    + E  E+++ +      +   + E E      Y LA  EI +          
Sbjct: 251 AEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALAN-EISRL--------- 300

Query: 381 DLGQREESLLEREHDLEVQSRALVDKEKDLVERSHLLEEKENKLIAFEKEADLKKSLLQK 440
                       E   ++    L + E+ L E    LEE E+KL   E   +L +  L++
Sbjct: 301 ------------EQQKQILRERLANLERQLEELEAQLEELESKLD--ELAEELAE--LEE 344

Query: 441 EKEEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEAMKSEAGELSVLEIKLKEELDVVRAQ 500
           + EE+      L+  L  L+ + ++    + +LE ++ +   L     +L+ ++  +  +
Sbjct: 345 KLEELKEELESLEAELEELEAELEE---LESRLEELEEQLETLRSKVAQLELQIASLNNE 401

Query: 501 KLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVERVVVSKSLKD-ERDSLRQ 559
              L    ++L+  + + + E        EEL K+ E   ++ +       + E + L++
Sbjct: 402 IERLEARLERLEDRRERLQQE-------IEELLKKLEEAELKELQAELEELEEELEELQE 454

Query: 560 ERDAMRDQHKRDVDSLNREREEF 582
           E + + +  +   + L    +  
Sbjct: 455 ELERLEEALEELREELEEAEQAL 477

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain

 Score = 46.9 bits (111), Expect = 6e-05
 Identities = 85/636 (13%), Positives = 217/636 (34%), Gaps = 14/636 (2%)

Query: 71   ILEKKELASKYEQIKASAEAAELLQKHDRASHLSAIAEARKREESLKKT-LGVEKECIAS 129
            + E++E   K E+ +      EL +  +         +    +++LK     +E +    
Sbjct: 414  LSEQEEDLLKEEKKEELKIVEELEESLETKQGKLTEEKEELEKQALKLLKDKLELKKSED 473

Query: 130  LEKAVHEIRAESAETKVAADSKFAEARCMVENAQ--KKFAEAEAKLHAAESLQAEANRYH 187
            L K    ++       +    K  EA      A+       A  K      + + A R  
Sbjct: 474  LLKETKLVKLLEQLELLLLRQKLEEASQKESKAREGLAVLLALIKDGVGLRIISAAGRGG 533

Query: 188  RSAERKLQEVVAREDDLSRRIASFKADCEEKEREIIRERQSLSDRKKILQQEHERLLDAQ 247
                      VA    +   +++   + +E+++ +    +     +  +  +    L  +
Sbjct: 534  DLGVAVANYKVAISVAVIVEVSAVADEVDERQKLVRALTELPLPARTFVLLDPLLKLPLK 593

Query: 248  TLLNEREDHILSKLQELSRKEKELEASRANVEEKFKALNEEKSNLDLTLVSLLKREEAVI 307
            ++       I   L      +  LEA   +   K      + + L   L S   +E  + 
Sbjct: 594  SIAVL---EIDPALNLAQLNKATLEADEDDKRAKVVEGILKDTELTKLLESAKAKESGLR 650

Query: 308  EREASLQKKEQKLLVSQETLASKESNEIQKIIANHESALRVKQSEFEAELAIKYKLAEDE 367
            +  +  +   +K  +        +    ++ +     +   K      +  IK K    +
Sbjct: 651  KGVSLEEGLAEKSELKASLSELTKELLAEQELQEKAESELAKNEILRRQEEIKKKEQRIK 710

Query: 368  IEKKRRAWELRDLDLGQREESLLEREHDLEVQSRALVDKEKDLVERSHLLEEKENKLIAF 427
             E K+   E  +L   + +E+  +   +L++  + + +KE++  +     EE+E +    
Sbjct: 711  EELKKLKLEKEELLADKVQEAQDKINEELKLLEQKIKEKEEEEEKSRLKKEEEEEEKSEL 770

Query: 428  EKEADLKKSLLQKEKEEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEAMKSEAGELSVLE 487
              +        +K ++     + +  K  +  +E +      K++ E ++ E   +   E
Sbjct: 771  SLKEKELAEEEEKTEKLKVEEEKEE-KLKAQEEELRALEEELKEEAELLEEEQLLIEQEE 829

Query: 488  IKLKEELDVVRAQKLELMVETDKLQLEK---AKFEAEWEMIDEKREELRKEAERVAVERV 544
               +EEL+ +  +  E        + E     +   + E++ E   +  +  E+  ++  
Sbjct: 830  KIKEEELEELALELKEEQKLEKLAEEELERLEEEITKEELLQELLLKEEELEEQ-KLKDE 888

Query: 545  VVSKSLKDERDSLRQERDAMRDQHKRDVDSLNREREEF---MNKMVHEHSEWFTKIQQER 601
            + SK  K++ +    E ++ +D    + ++   ER      +        E     + + 
Sbjct: 889  LESKEEKEKEEKKELEEESQKDNLLEEKENEIEERIAEEAIILLKYESEPEELLLEEADE 948

Query: 602  ADFLLGIEMQKRDLENCIEKRREELESSFREREKAFEEEKMREFQQISSLKEKAEKELEQ 661
             +     + ++ +    +   +EEL +        FEE++ R  +     +   E++ E 
Sbjct: 949  KEKEEDNKEEEEERNKRLLLAKEELGNVNLMAIAEFEEKEERYNKDELKKERLEEEKKEL 1008

Query: 662  VTLEIKRLDLERMEINMDRQRRDREWAELNNSIEEL 697
            +   I+       E        +R   ++   +E  
Sbjct: 1009 LREIIEETCQRFKEFLELFVSINRGLNKVFFYLELG 1044

This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination. Length = 1162

>gnl|CDD|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional

 Score = 46.6 bits (111), Expect = 7e-05
 Identities = 112/491 (22%), Positives = 205/491 (41%), Gaps = 40/491 (8%)

Query: 43  RRDKAALIAYIAKLETEIFEHQHHMGLLILEKKELASKYEQIKASAEAAELLQ---KHDR 99
           R   A       +L  E+ + +  +  L  E+ +L ++     A AEA E  +   +   
Sbjct: 264 RETIAETEREREELAEEVRDLRERLEELEEERDDLLAEAGLDDADAEAVEARREELEDRD 323

Query: 100 ASHLSAIAEARKREESLKKTLGVEKECIASLEKAVHEIRAESAETKVAADSKFAEARCMV 159
                 + E R   ++  +     +E    LE+   E+R E+AE     +S+  EAR  V
Sbjct: 324 EELRDRLEECRVAAQAHNEEAESLREDADDLEERAEELREEAAE----LESELEEAREAV 379

Query: 160 ENAQKKFAEAEAKLHAAESLQAEANRYHRSAERKLQEVVAREDDLSRRIASFKADCEEKE 219
           E+ +++  E E ++        +A     +AE  L+E+    D+L  R A  +A      
Sbjct: 380 EDRREEIEELEEEIEELRERFGDAPVDLGNAEDFLEELREERDELREREAELEATLRT-A 438

Query: 220 REIIRERQSLSDRKKILQ--QEHERLLDAQTLLNEREDHILSKLQELSRKEKELEASRAN 277
           RE + E ++L +  K  +  Q  E     +T+  +RE     +++EL  + ++LE     
Sbjct: 439 RERVEEAEALLEAGKCPECGQPVEGSPHVETIEEDRE-----RVEELEAELEDLEEEVEE 493

Query: 278 VEEKF---KALNEEKSNLDLTLVSLLKREEAVIEREASLQKKEQKLLVSQETLASKESNE 334
           VEE+    + L E +  ++         EE + ER  ++++K ++    +E  A  E+  
Sbjct: 494 VEERLERAEDLVEAEDRIERLEERREDLEELIAERRETIEEKRERAEELRERAAELEAEA 553

Query: 335 IQKIIANHESALRVKQSEFEAELAIKYKLAE--DEIEKKRRAWELRDL--DLGQREESLL 390
            +K  A  E+     +   E    +  KLAE  + IE   R   L     D     E L 
Sbjct: 554 EEKREAAAEAEEEA-EEAREEVAELNSKLAELKERIESLERIRTLLAAIADAEDEIERLR 612

Query: 391 EREHDLEVQSRALVDKEKDLVERSHLLEEK----------ENKLIAFEKEADLKKSLLQK 440
           E+   L   +    ++  +  ER   LE +          E+K  A E    +++ L + 
Sbjct: 613 EKREALAELNDERRERLAEKRERKRELEAEFDEARIEEAREDKERAEEYLEQVEEKLDEL 672

Query: 441 EKE------EVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEAMKSEAGELSVLEIKLKEEL 494
            +E      E+  ++++L + L  L E+++ +    + LEA+  EA EL  +   L+ EL
Sbjct: 673 REERDDLQAEIGAVENEL-EELEELRERREALENRVEALEALYDEAEELESMYGDLRAEL 731

Query: 495 DVVRAQKLELM 505
                + LE M
Sbjct: 732 RQRNVETLERM 742

Length = 880

>gnl|CDD|218636 pfam05557, MAD, Mitotic checkpoint protein

 Score = 46.5 bits (110), Expect = 7e-05
 Identities = 100/531 (18%), Positives = 185/531 (34%), Gaps = 43/531 (8%)

Query: 222 IIRERQSLSDRKKILQQEHERLLDAQTLLNEREDHILSKLQELSRKEKELEASRANVEEK 281
           +I+    L  ++   ++    L    + L E  +  L +  EL  + K LE      E +
Sbjct: 70  LIQLENELMQKELEHKRAQIELERKASTLAENYERELDRNLELEVRLKALEELEKKAENE 129

Query: 282 FKALNEEKSNLDLTLVSLLKREEAVIEREASLQKKEQKLLVSQETLASKESNEIQKIIAN 341
                EE   L       L  E   ++ E   Q KE K  +S       + +E+Q    N
Sbjct: 130 AAEAEEEAKLLKDK----LDAESLKLQNEKEDQLKEAKESIS---RIKNDLSEMQCRAQN 182

Query: 342 HESALRVKQSEFEA-----ELAIKYKLAEDEIEKKRRAWELRDLDLGQR----EESLLER 392
            ++ L++ +SE E      E   K     ++  +   + +    D   +    EE L   
Sbjct: 183 ADTELKLLESELEELREQLEECQKELAEAEKKLQSLTSEQASSADNSVKIKHLEEELKRY 242

Query: 393 EHDLEVQ----------SRALVDKEKDLVERSHLLEEKENKLIAFEKEADLKKSL--LQK 440
           E D EV                +      E   L   KE+  +  E+  DL+  L   +K
Sbjct: 243 EQDAEVVKSMKEQLLQIPELERELAALREENRKLRSMKEDNELLKEELEDLQSRLERFEK 302

Query: 441 EKEEVNIIKSDLQKSLSSLDEKKKQVNCAKDKL---EAMKSEAGELSVLEIKLKEELDVV 497
            +E++  ++ + +K  + L   K  +      L   + +      L   E++LKE+   +
Sbjct: 303 MREKLADLELEKEKLENELKSWKSLLQDIGLNLRTPDDLSRRIVVLQNEELQLKEKNGSI 362

Query: 498 RAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVERVVVSKSLKDERDSL 557
            +   +L     +LQLE+ K  +E   + +K E L+    R+     +V+K     R  L
Sbjct: 363 SSSAKQLETTLQQLQLERQKAVSEILELKKKLEALKALVRRLQRRLTLVTKERDGLRAIL 422

Query: 558 RQERDAMRDQHKRDVDSLNREREEFMNKMVHEHSEWFTKIQQERADFLLGIEMQKRDLEN 617
                 + +           E  E + + V  H           A     +   + D+  
Sbjct: 423 NSYDKELTETSVSGQLMKRLEEAEDLVQKVQSHL----------AKMENQLSELEEDVG- 471

Query: 618 CIEKRREELESSFREREKAFEEEKMREFQQISSLKEKAEKELEQVTLEIKRLDLERMEIN 677
             +K R     +  +  K       R    +         ++E +  E  RL  E+  + 
Sbjct: 472 -QQKDRNNTLETEIKLLKEQLVSNERLLSFVKEATNALRLKIETLERERDRLRQEKSLLE 530

Query: 678 MDRQRRDREWAELNNSIEELMVQRQKLEEQRQLLHADREEIQAESERLKKL 728
           M  +    +     +  + L +      E  Q+     E +QAE E+LK+ 
Sbjct: 531 MKLEHLCLQGDYNASRTKVLHMSLNPASEAEQIAKQTIEALQAECEKLKER 581

This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in yeast and higher eukaryotes. In S.cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated. Length = 722

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 46.6 bits (111), Expect = 8e-05
 Identities = 75/352 (21%), Positives = 148/352 (42%), Gaps = 53/352 (15%)

Query: 411 VERSHLLEEKENKLIAFEKEADLKKSLLQKEKEEVNIIKSDLQKSLSSLDEKKKQVNCAK 470
           VER  +++E     IA   E D KK   +K  EE+  ++ ++++    +DEK++Q+    
Sbjct: 153 VERRKIIDE-----IAGVAEFDRKK---EKALEELEEVEENIERLDLIIDEKRQQL---- 200

Query: 471 DKLEAMKSEAGELSVLEIKLKE-ELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKR 529
           ++L   + +A     L  + +E E   +  +K  L  + + ++ + A  E E E + E+ 
Sbjct: 201 ERLRREREKAERYQALLKEKREYEGYELLKEKEALERQKEAIERQLASLEEELEKLTEEI 260

Query: 530 EELRKEAERVAVERVVVSKSLKDERD---------------SLRQERDAMRDQHKRDVDS 574
            EL K  E +      ++K +KD  +                +     ++ ++ +   D+
Sbjct: 261 SELEKRLEEIEQLLEELNKKIKDLGEEEQLRVKEKIGELEAEIASLERSIAEKERELEDA 320

Query: 575 LNRER--EEFMNKMVHEHSEWFTKIQQERADFLLGIEMQKRDLENCIEKRREELESSFRE 632
             R    E  ++K++ E  E   +I++ER         ++  L     + +EELE    E
Sbjct: 321 EERLAKLEAEIDKLLAEIEELEREIEEERK--------RRDKLTEEYAELKEELEDLRAE 372

Query: 633 REKAFEEEKMREFQQISSLKEKAEK----------ELEQVTLEIKRLDLERMEINMDRQR 682
            E   ++E      ++   +EK EK          EL+++  E++RL  E  ++N     
Sbjct: 373 LE-EVDKEFAETRDELKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAG 431

Query: 683 RDREWAELNNS----IEELMVQRQKLEEQRQLLHADREEIQAESERLKKLED 730
            + +  EL         E+  Q  KLE+    L    +E+    E   ++E 
Sbjct: 432 IEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEK 483

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|235600 PRK05771, PRK05771, V-type ATP synthase subunit I; Validated

 Score = 46.5 bits (111), Expect = 8e-05
 Identities = 47/304 (15%), Positives = 115/304 (37%), Gaps = 61/304 (20%)

Query: 382 LGQREESLLEREHDL-EVQSRALVDKEK-----DLVERSHLLEEKENKLIAFEKEADLKK 435
           L   ++ +LE  H+L  V    L ++        L      L E  +KL ++  + +  +
Sbjct: 14  LKSYKDEVLEALHELGVVHIEDLKEELSNERLRKLRSLLTKLSEALDKLRSYLPKLNPLR 73

Query: 436 SLLQKEK--------EEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEAMKSEAGELSVLE 487
              +K          ++V      ++K +  L+E+  ++     +LE            +
Sbjct: 74  EEKKKVSVKSLEELIKDVEEELEKIEKEIKELEEEISELENEIKELEQEIERLEPWGNFD 133

Query: 488 IKLKEELD----------VVRAQKLELMVETDKLQLEKAKFEAEWEMI-----DEKREEL 532
           + L   L           V   +  EL +E+D   +E    +  +  +      E  +E+
Sbjct: 134 LDLSLLLGFKYVSVFVGTVPEDKLEELKLESDVENVEYISTDKGYVYVVVVVLKELSDEV 193

Query: 533 RKEAERVAVERVVVS--KSLKDERDSLRQERDAMRDQHKRDVDSLNREREEFMNKMVHEH 590
            +E +++  ER+ +    +  +    +++E           ++ + +ERE  + ++    
Sbjct: 194 EEELKKLGFERLELEEEGTPSELIREIKEE-----------LEEIEKERESLLEELK--- 239

Query: 591 SEWFTKIQQERADFLLGIEMQKRDLENCIEKRREELESSFREREKAF------EEEKMRE 644
                ++ ++  + LL +          IE  R E  S F + +K F       E+++++
Sbjct: 240 -----ELAKKYLEELLALYE-----YLEIELERAEALSKFLKTDKTFAIEGWVPEDRVKK 289

Query: 645 FQQI 648
            +++
Sbjct: 290 LKEL 293

Length = 646

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 46.2 bits (110), Expect = 1e-04
 Identities = 68/357 (19%), Positives = 146/357 (40%), Gaps = 43/357 (12%)

Query: 365 EDEIEKKRRAWELRDLDLGQREESLLEREHDLEVQSRALVDKEKDLVERSHLLEEKENKL 424
             E EK  R   L   +  + E   L +E +   + +  ++++   +E    LE+   ++
Sbjct: 204 RREREKAERYQALLK-EKREYEGYELLKEKEALERQKEAIERQLASLEEE--LEKLTEEI 260

Query: 425 IAFEKEADLKKSLLQKEKEEVNIIKSDLQKSLSS-LDEKKKQVNCAKDKLEAMKSEAGEL 483
              EK  +  + LL++  +++  +  + Q  +   + E + ++   +  +   + E  + 
Sbjct: 261 SELEKRLEEIEQLLEELNKKIKDLGEEEQLRVKEKIGELEAEIASLERSIAEKERELEDA 320

Query: 484 SVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVER 543
                KL+ E+D + A+  EL  E ++ +  + K   E+  + E+ E+LR E E V  E 
Sbjct: 321 EERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKE- 379

Query: 544 VVVSKSLKDERDSLRQERDAMRDQHKRDVDSLNREREEFMNKMVHEHSEWFTKIQQERAD 603
                  +DE    R++ + +    KR+++ L RE +                      +
Sbjct: 380 ---FAETRDELKDYREKLEKL----KREINELKRELDRLQ-------------------E 413

Query: 604 FLLGIEMQKRDLENCIEKRREELESSFREREKAFEEEKMREFQQISSLKEKAEKELEQVT 663
            L  +  +  DL   I     ++     E+E    E K            K E +LEQ+ 
Sbjct: 414 ELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIK------------KQEWKLEQLA 461

Query: 664 LEIKRLDLERMEINMDRQRRDREWAELNNSIEELMVQRQKLEEQRQLLHADREEIQA 720
            ++ + + E  ++  +  R ++E ++L   + E   Q +  EE+ +   A  E ++A
Sbjct: 462 ADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQARASEERVRGGRAVEEVLKA 518

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional

 Score = 44.6 bits (106), Expect = 3e-04
 Identities = 105/537 (19%), Positives = 213/537 (39%), Gaps = 75/537 (13%)

Query: 245 DAQTLLNEREDHILSKLQ-ELSRKEKELEASRANVEEKFKALNEEKSNLDLTLVSLLKRE 303
           D +  L++ +  I  K + +L  +   LE+  A ++E+ +   E++     T     +  
Sbjct: 184 DQRGSLDQLKAQIEEKEEKDLHERLNGLESELAELDEEIERYEEQREQARETRDEADEVL 243

Query: 304 EAVIEREASLQKKEQKLLVSQETLASKESNEIQKIIANHESALRVKQSEFEAELAIKYKL 363
           E   ER   L+  E ++   +ET+A  E              +R  +   E EL      
Sbjct: 244 EEHEERREELETLEAEIEDLRETIAETERER-----EELAEEVRDLRERLE-EL------ 291

Query: 364 AEDEIEKKRRAWELRDLDLGQREESLLEREHDLEVQSRALVDKEKDLVERSHLLEEKENK 423
            E+E +       L D D     E++  R  +LE +   L      L E     +    +
Sbjct: 292 -EEERDDLLAEAGLDDAD----AEAVEARREELEDRDEEL---RDRLEECRVAAQAHNEE 343

Query: 424 LIAFEKEADLKKSLLQKEKEEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEAMKSEAGEL 483
             +  ++AD  +   ++ +EE   ++S+L+++  ++++        ++++E ++ E  EL
Sbjct: 344 AESLREDADDLEERAEELREEAAELESELEEAREAVED-------RREEIEELEEEIEEL 396

Query: 484 SVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELR---------- 533
                    +L        EL  E D+L+  +A+ EA      E+ EE            
Sbjct: 397 RERFGDAPVDLGNAEDFLEELREERDELREREAELEATLRTARERVEEAEALLEAGKCPE 456

Query: 534 -----KEAERVAV--ERVVVSKSLKDERDSLRQERDAMRDQHKRDVDSLNREREEFMNKM 586
                + +  V    E     + L+ E + L +E + + ++ +R  D +  E        
Sbjct: 457 CGQPVEGSPHVETIEEDRERVEELEAELEDLEEEVEEVEERLERAEDLVEAEDR------ 510

Query: 587 VHEHSEWFTKIQQERADFLLGIEMQKRDLENCIEKRREELESSFREREKAFEEEKMREFQ 646
                    ++++ R D    +E    +    IE++RE  E   RER    E E   + +
Sbjct: 511 -------IERLEERRED----LEELIAERRETIEEKRERAEEL-RERAAELEAEAEEKRE 558

Query: 647 QISSLKEKAEKELEQVTLEIKRLDLERMEINMDRQRRDR---EWAELNNSIEELMVQRQK 703
             +  +E+AE+  E    E+  L+ +  E+    +  +R     A + ++ +E+   R+K
Sbjct: 559 AAAEAEEEAEEARE----EVAELNSKLAELKERIESLERIRTLLAAIADAEDEIERLREK 614

Query: 704 LEEQRQLLHADREEIQAESERLKKLEDLKIAVDYMAVSEMQ--RSRLEHSQKKISAK 758
            E   +L    RE +  + ER ++LE      D   + E +  + R E   +++  K
Sbjct: 615 REALAELNDERRERLAEKRERKRELEA---EFDEARIEEAREDKERAEEYLEQVEEK 668

Length = 880

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 44.3 bits (105), Expect = 4e-04
 Identities = 43/206 (20%), Positives = 97/206 (47%), Gaps = 13/206 (6%)

Query: 527 EKREELRKEAERVAVERVVVSKSLKDERDSLRQERDAMRDQHKRDVDSLNREREEFMNKM 586
           E + ELR+    + V R+   + L++E + L++E     ++ +     L  E EE + ++
Sbjct: 217 ELKAELRELELALLVLRL---EELREELEELQEELKEAEEELEELTAELQ-ELEEKLEEL 272

Query: 587 VHEHSEWFTKIQQERADFLLGIEMQKRDLENCIEKRREELESSFREREKAFEEEKMREFQ 646
             E SE   +I++ + + L  +  +   LE   +  RE L +  R+ E+   +      +
Sbjct: 273 RLEVSELEEEIEELQKE-LYALANEISRLEQQKQILRERLANLERQLEELEAQ-----LE 326

Query: 647 QISSLKEKAEKELEQVTLEIKRLDLERMEINMDRQRRDREWAELNNSIEELMVQRQKLEE 706
           ++ S  ++  +EL ++  +++ L  E   +  + +  + E  EL + +EEL    ++LE 
Sbjct: 327 ELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEEL---EEQLET 383

Query: 707 QRQLLHADREEIQAESERLKKLEDLK 732
            R  +     +I + +  +++LE   
Sbjct: 384 LRSKVAQLELQIASLNNEIERLEARL 409

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|227278 COG4942, COG4942, Membrane-bound metallopeptidase [Cell division and chromosome partitioning]

 Score = 43.2 bits (102), Expect = 6e-04
 Identities = 40/230 (17%), Positives = 79/230 (34%), Gaps = 10/230 (4%)

Query: 104 SAIAEARKREESLKKTLGVEKECIASLEKAVHEIRAESAETKVAADSKFAEARCMVENAQ 163
             I E + +   L+K L   +  IASLE  +  I       K+        AR  +   +
Sbjct: 52  KKIREQQDQRAKLEKQLKSLETEIASLEAQL--IETADDLKKLRKQIADLNAR--LNALE 107

Query: 164 KKFAEAEAKLHAAESLQAEANRYHRS---AERKLQEVVAREDDLSRRIASFKADCEEKER 220
            +  E   +L  AE L A   R  R+   A     E   R   L+    +      E+  
Sbjct: 108 VQEREQRRRL--AEQLAA-LQRSGRNPPPALLVSPEDAQRSVRLAIYYGALNPARAERID 164

Query: 221 EIIRERQSLSDRKKILQQEHERLLDAQTLLNEREDHILSKLQELSRKEKELEASRANVEE 280
            +    + L+  +  +  E   L    +    ++  +   L+E  +   +L +  +  ++
Sbjct: 165 ALKATLKQLAAVRAEIAAEQAELTTLLSEQRAQQAKLAQLLEERKKTLAQLNSELSADQK 224

Query: 281 KFKALNEEKSNLDLTLVSLLKREEAVIEREASLQKKEQKLLVSQETLASK 330
           K + L   +S L   + S         E  A+ +    +   ++     +
Sbjct: 225 KLEELRANESRLKNEIASAEAAAAKAREAAAAAEAAAARARAAEAKRTGE 274

Length = 420

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 43.1 bits (102), Expect = 8e-04
 Identities = 47/258 (18%), Positives = 117/258 (45%), Gaps = 18/258 (6%)

Query: 511 LQLEKAKFEAEWEMIDEKREELRKEAERVAVERVVVSKSLKDERDSLRQERDAMRDQH-- 568
             L      AE + + E+ E L++E   +  E     + +++  D L QE      +   
Sbjct: 665 GILFSRSEPAELQRLRERLEGLKRELSSLQSEL----RRIENRLDELSQELSDASRKIGE 720

Query: 569 -KRDVDSLNREREEFMNKMVHEHSEWFTKIQQERADFLLGIEMQKRDLENCIEKRREELE 627
            +++++ L +E E+   + + E  E  + ++QE  +    ++ + ++LE  IE+  E+L 
Sbjct: 721 IEKEIEQLEQEEEKL-KERLEELEEDLSSLEQEIEN----VKSELKELEARIEELEEDLH 775

Query: 628 SSFREREKAFEEEKMREFQQISSLKEKAEKELEQVTLEIKRLDLERMEINMDRQRRDREW 687
                              +I +   K E+E+ ++   ++ ++ +   + ++++  ++E 
Sbjct: 776 KLEEALNDLEARLSHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEI 835

Query: 688 AELNNSIEELMVQRQKLEEQRQLLHADREEIQAESERLK-KLEDLKIAVDYMAVSEMQRS 746
            EL     +L  Q + +E++ + L+  +EE++ E E L+  L DL+       + ++++ 
Sbjct: 836 QELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLE-----SRLGDLKKE 890

Query: 747 RLEHSQKKISAKRHLNQQ 764
           R E   +    +R + + 
Sbjct: 891 RDELEAQLRELERKIEEL 908

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|129705 TIGR00618, sbcc, exonuclease SbcC

 Score = 43.4 bits (102), Expect = 8e-04
 Identities = 90/622 (14%), Positives = 193/622 (31%), Gaps = 67/622 (10%)

Query: 172 KLHAAESLQAEANRYHRSAERKLQEVVAREDDLSRRIASFKADCEEKEREIIRERQSLSD 231
            L     L        +S   K + +  R   L+           E+++ + +E + L +
Sbjct: 174 PLDQYTQLALMEFAKKKSLHGKAELLTLRSQLLTLCTPCMPDTYHERKQVLEKELKHLRE 233

Query: 232 RKKILQQEHERLLDAQTLLNEREDHILSKLQELSRKEKELEASRANVEEKFKALNEEKSN 291
             +  QQ H  L   +    E+       L++L  + +EL A  A +EE  + +N     
Sbjct: 234 ALQQTQQSHAYLTQKREAQEEQ-LKKQQLLKQLRARIEELRAQEAVLEETQERIN----- 287

Query: 292 LDLTLVSLLKREEAVIEREASLQKKEQKLLVSQETLASKESNEIQKIIANHESALRVKQS 351
                                  +K   L    + +      +I++      + L+ K  
Sbjct: 288 ---------------------RARKAAPLAAHIKAVT-----QIEQQAQRIHTELQSKMR 321

Query: 352 EFEAELAIKYKLAEDEIEKKRRAWELRDLDLGQREESLLEREHDLEVQSRALVDKEKDLV 411
                L  +    + +   + +   L+ L     +E  +   H++    R +  ++  L 
Sbjct: 322 SRAKLLMKRAAHVKQQSSIEEQRRLLQTL---HSQEIHIRDAHEVATSIREISCQQHTL- 377

Query: 412 ERSHLLEEKENKLIAFEKEADLKKSLLQKEKEEVNIIKSDLQKSLSSLDEKKKQVNC-AK 470
              H+   ++ K    +K   L K L   ++E+  I                 +     +
Sbjct: 378 -TQHIHTLQQQKTTLTQKLQSLCKELDILQREQATIDTRTSAFRDLQGQLAHAKKQQELQ 436

Query: 471 DKLEAMKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKRE 530
            +   + + A   +    KL++      AQ L+   +  + + +    E   + +   R 
Sbjct: 437 QRYAELCAAAITCTAQCEKLEKIHLQESAQSLKEREQQLQTKEQIHLQETRKKAVVLARL 496

Query: 531 ELRKEAERVAVERVV---VSKSLKDERDSLRQERDAMRDQHKRDVDSLNREREEFMNKMV 587
              +E         +    ++   D    L +        + +   S      +  ++  
Sbjct: 497 LELQEEPCPLCGSCIHPNPARQDIDNPGPLTRRMQRGEQTYAQLETSEEDVYHQLTSERK 556

Query: 588 HEHSEWFTKIQQERADFLLGIEMQKRDLENC-IEKRREELESSFREREKAFEEEKM-REF 645
                   K Q +       I  Q  +     I   +          EK  E E M    
Sbjct: 557 Q---RASLKEQMQEIQQSFSILTQCDNRSKEDIPNLQNITVRLQDLTEKLSEAEDMLACE 613

Query: 646 QQISSLKEKAEKELEQVTLE---------IKRLDLERMEINMDRQRRDREWAELNNSIEE 696
           Q     K + E++L+ V L          +K   L  +++ + ++R       +    +E
Sbjct: 614 QHALLRKLQPEQDLQDVRLHLQQCSQELALKLTALHALQLTLTQERVREHALSIRVLPKE 673

Query: 697 LMVQRQ----KLEEQRQLLHADREEIQAESERLKKLEDLKIAVDYMAVSEMQRSRLEHSQ 752
           L+  RQ    K++ +++ L   +E +      L++LE          + E  R   E   
Sbjct: 674 LLASRQLALQKMQSEKEQLTYWKEMLAQCQTLLRELET--------HIEEYDREFNEIEN 725

Query: 753 KKISAKRHLNQQTSLAHADLGS 774
              S    L  +    +  L  
Sbjct: 726 ASSSLGSDLAAREDALNQSLKE 747

All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University) [DNA metabolism, DNA replication, recombination, and repair]. Length = 1042

>gnl|CDD|227061 COG4717, COG4717, Uncharacterized conserved protein [Function unknown]

 Score = 43.3 bits (102), Expect = 9e-04
 Identities = 125/685 (18%), Positives = 238/685 (34%), Gaps = 80/685 (11%)

Query: 104 SAIAEARKREESLKKTLGVEKECIASLEKAVHEIRAESAETKVAADSKFAEARCMVENAQ 163
           + I EA K   +  K L   +   A L +   E+RA+    +                A 
Sbjct: 195 NEIDEAEKEYATYHKLLESRRAEHARLAELRSELRADRDHIR----------------AL 238

Query: 164 KKFAEAEAKLHAAESLQAEANRYHRSAERKLQEVVAREDDLSRRIASFKADCEEKEREII 223
           +   E   +L   + L+ E  R         +E+     D   R+   +A  ++ E EI 
Sbjct: 239 RDAVELWPRLQEWKQLEQELTRR-------REELATFPRDGVLRLEKREAHLQKTEAEID 291

Query: 224 RERQSLSDRKKILQQ---EHERLLDAQTLLNEREDHILSKLQELSRKEKELEAS-RANVE 279
                L++ K +  Q     E +L A   L+++   I +   EL+     +EA  R   E
Sbjct: 292 ALLVRLAELKDLASQLIPAKEAVLQALVRLHQQLSEIKASAFELTETLAGIEADLRDKEE 351

Query: 280 EKFKALNEEKSNLDLTLVSLLKREEAVIEREASLQKKEQKLLVSQETLASKESNEIQKII 339
                   E+ +   +L  +L+ + +  E + +     ++L   +      E    Q++ 
Sbjct: 352 AAGNGFEAERVHDLRSLECMLRYQSSQRELKQTEAAYCKRLDEKRLFEDEAEEEARQRL- 410

Query: 340 ANHESALRVKQSEFEAELAIKYKLAEDEIEKKRRAWELRDLD-----LGQREESLLEREH 394
           A+ E  +R      E ++A   ++ + E  +    ++ RD         + +++  ER+ 
Sbjct: 411 ADDEEEVRAGDEAREEKIAANSQVIDKE--EVCNLYDRRDTAWQKQRFLREKQTAFERQK 468

Query: 395 DLEVQSRALVDKEKDLVERSHLLEEKENKLIAFEKEADLKKSLLQKEKEEVNIIKSDLQK 454
               +  AL      LV  S LL      LI     A  +   L         IKS  + 
Sbjct: 469 TEHTKIIALRLAGMLLVALSRLL----TSLIFQIIFAVAQIVFL------SAEIKSSSRA 518

Query: 455 SLSSLDEKKKQVNCAKDKLEAMKSEAGELSVLEIKLKEEL--DVVRAQKLELMVETDKLQ 512
                 E+K     A   +    +       L     + L    +R    +L    D+L+
Sbjct: 519 V----REEK----AAVTDIPEELARLLITDELPELAVDLLVQSRIRQHWQQLRKALDQLE 570

Query: 513 LEKAKFEAEWEMIDEKREELRKEAERVAVE---RVVVSKSLKDERDSLRQERDAMRDQHK 569
                 E  +   +    E + E E    E      +S   + +  S  ++      Q K
Sbjct: 571 AAYEALEGRFAAAEAAMAEWQSEWEEALDELGLSRELSPEQQLDILSTMKDLKK-LMQKK 629

Query: 570 RDVD----SLNREREEFMNKMVHEHSE---------WFTKIQQERADFLLGIEMQKRDLE 616
            ++      L  E+  F  ++    +              +Q+ R    L  E  +  LE
Sbjct: 630 AELTHQVARLREEQAAFEERVEGLLAVLEAQFIDLSTLFCVQRLRVAAELQKEEARLALE 689

Query: 617 NCIEKRREELESSFREREKAFEEEKMREFQQISSLKEKAEKELEQVTLEIKRLDLERMEI 676
             IE R +EL    R   +   +E +  F   ++  E A +E  +   ++ + +     +
Sbjct: 690 GNIE-RTKELNDELRAELELHRKEILDLFDCGTADTEDAFREAAREEQQLTQRESRLESL 748

Query: 677 NMDRQRRDREWAELNNSIEELMV---QRQKLEEQRQLLHADREEIQAE----SERLKKLE 729
               +    E  EL+ S+++  +   +   LEE    L  + EE+ A+    S ++ +LE
Sbjct: 749 EAQLEGVAAEAYELSASLDQRELKEEELALLEEAIDALDEEVEELHAQVAALSRQIAQLE 808

Query: 730 DLKIAVDYMAVSEMQRSRLEHSQKK 754
                 +     E  +  LE   +K
Sbjct: 809 GGGTVAELRQRRESLKEDLEEKARK 833

Length = 984

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 42.7 bits (101), Expect = 0.001
 Identities = 65/331 (19%), Positives = 143/331 (43%), Gaps = 23/331 (6%)

Query: 356  ELAIKYKLAEDEIEKKRRAWELRDLDLGQREESLLEREHDLEVQSRALVDKEKDLVERSH 415
            EL+ +   A  +I +  +  E  + +  + +E L E E DL    + + + + +L E   
Sbjct: 706  ELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEA 765

Query: 416  LLEEKENKLIAFEKE-ADLKKSL-------LQKEKEEVNIIKSDLQKSLSSLDEKKKQVN 467
             +EE E  L   E+   DL+  L       +Q E  ++    S ++  L  +++K  ++ 
Sbjct: 766  RIEELEEDLHKLEEALNDLEARLSHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLT 825

Query: 468  CAKDKLEAMKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDE 527
              K+ LE    E  EL    I LKE++  +  +   L  + ++L+ E  + EA    ++ 
Sbjct: 826  LEKEYLE---KEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLES 882

Query: 528  KREELRKEAERVAVERVVVSKSLKDERDSLRQERDAMRDQHKRDVDSLNREREEFMNKMV 587
            +  +L+KE + +  +     + L+ + + L  + +      KR   S  + + E + + +
Sbjct: 883  RLGDLKKERDELEAQL----RELERKIEELEAQIE-----KKRKRLSELKAKLEALEEEL 933

Query: 588  HEHSEWFTKIQQERADFLLGIEMQKRDLENCIEKRREELESSFREREKAFEEEKMREFQQ 647
             E  +   + ++   + L   ++Q       +E+    LE       + +EE   R   +
Sbjct: 934  SEIEDPKGEDEEIPEEELSLEDVQAELQR--VEEEIRALEPVNMLAIQEYEEVLKR-LDE 990

Query: 648  ISSLKEKAEKELEQVTLEIKRLDLERMEINM 678
            +   + K E+E + +   I+  + ++ E+ M
Sbjct: 991  LKEKRAKLEEERKAILERIEEYEKKKREVFM 1021

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 43.1 bits (102), Expect = 0.001
 Identities = 41/178 (23%), Positives = 78/178 (43%), Gaps = 18/178 (10%)

Query: 611 QKRDLENCIEKRREELESSFREREKAFEEEKMREFQQISSLKEKAEKELEQVTLEI---- 666
           ++R++E   E++ EELE    E EKA  E + +E +++    E+  KELE+++ +I    
Sbjct: 675 RRREIEEL-EEKIEELEEKIAELEKALAELR-KELEELEEELEQLRKELEELSRQISALR 732

Query: 667 KRLDLERMEINMDRQRRDREWAELNNSIEELMVQRQKLEEQRQLLHADREEIQAESERLK 726
           K L     E+    +R  +   EL     E+    ++LEE  + L     EI+    +++
Sbjct: 733 KDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIE 792

Query: 727 KLEDLKIAVDYMAVSE------------MQRSRLEHSQKKISAKRHLNQQTSLAHADL 772
           +L++   A+                     R RLE  +++I+A     +       +L
Sbjct: 793 QLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEEL 850

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|224188 COG1269, NtpI, Archaeal/vacuolar-type H+-ATPase subunit I [Energy production and conversion]

 Score = 42.7 bits (101), Expect = 0.001
 Identities = 42/214 (19%), Positives = 68/214 (31%), Gaps = 26/214 (12%)

Query: 381 DLGQREESLLEREHDLEVQSRALVDKEKDLVERSHLLEEKENKLIAFEKEADLKKSLLQK 440
            L  R   L E    LE + ++L +  K   + S  +EE   KL     E D +   L+ 
Sbjct: 75  GLEGRLFILPEEVEKLEAELKSLEEVIKPAEKFSSEVEELTRKLEERLSELDEELEDLED 134

Query: 441 EKEEVNIIKS----------------DLQKSLSSLDEKKKQVNCAKDKLEAMKSEAGELS 484
             EE+  +                   L        E    V   +  L     EA  + 
Sbjct: 135 LLEELEPLAYLDFDLSLLRGLKFLLVRLGLVRREKLEALVGVIEDEVALYGENVEASVVI 194

Query: 485 V---LEIKLKEELDVVRAQKLELM-VETDKLQLEKAKFEAEWE------MIDEKREELRK 534
           V       L +   ++     EL  V        +   E E         ++  R EL  
Sbjct: 195 VVAHGAEDLDKVSKILNELGFELYEVPEFDGGPSELISELEEVIAEIQDELESLRSELEA 254

Query: 535 EAERVAVERVVVSKSLKDERDSLRQERDAMRDQH 568
            AE++A E + V + L+ E+          R ++
Sbjct: 255 LAEKIAEELLAVREILEIEKALGDVLSKLARTEY 288

Length = 660

>gnl|CDD|234750 PRK00409, PRK00409, recombination and DNA strand exchange inhibitor protein; Reviewed

 Score = 42.5 bits (101), Expect = 0.001
 Identities = 30/124 (24%), Positives = 55/124 (44%), Gaps = 13/124 (10%)

Query: 158 MVENAQKKFAEAEAKLHAAESLQAEANRYHRSAERKLQEVVAREDDLSRR--------IA 209
           ++ + ++   E E K   AE+L  EA +     E K +++   ED L           I 
Sbjct: 521 LIASLEELERELEQKAEEAEALLKEAEKLKEELEEKKEKLQEEEDKLLEEAEKEAQQAIK 580

Query: 210 SFKADCEEKEREIIRERQSLSDRKKILQQEHERLLDAQTLLNEREDHILSKLQELSRKEK 269
             K + +    EII+E + L        + HE L++A+  LN+  +    K ++   K++
Sbjct: 581 EAKKEAD----EIIKELRQLQKGGYASVKAHE-LIEARKRLNKANEKKEKKKKKQKEKQE 635

Query: 270 ELEA 273
           EL+ 
Sbjct: 636 ELKV 639

Length = 782

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 42.0 bits (99), Expect = 0.002
 Identities = 81/371 (21%), Positives = 169/371 (45%), Gaps = 24/371 (6%)

Query: 371  KRRAWELRDLDLGQREESLLEREHDLEVQSRALVDK----EKDLVERSHLLEEKENKLIA 426
              R   L         + L ER   L+ +  +L  +    E  L E S  L +   K+  
Sbjct: 661  APRGGILFSRSEPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGE 720

Query: 427  FEKEADLKKSLLQKEKEEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEAMKSEAGELSVL 486
             EKE       L++E+E++     +L++ LSSL+++ + V   K +L+ +++   EL   
Sbjct: 721  IEKEI----EQLEQEEEKLKERLEELEEDLSSLEQEIENV---KSELKELEARIEELEED 773

Query: 487  EIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVERVVV 546
              KL+E L+ + A+         ++Q E +K E E   I+ +  E+ ++  R+ +E+  +
Sbjct: 774  LHKLEEALNDLEAR--LSHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYL 831

Query: 547  SKSLKDERDSLRQERDAMRDQHKRDVDSLNREREEFMNKMVHEHSEWFTKIQQERADFLL 606
             K +++ ++  R +        ++++++LN ++EE + + + E       ++    D   
Sbjct: 832  EKEIQELQE-QRIDLKEQIKSIEKEIENLNGKKEE-LEEELEELEAALRDLESRLGDLKK 889

Query: 607  GIEMQKRDLENCIEKRREELESSFREREKAFEEEKMREFQQISSLKEKAEKELEQVTLEI 666
              +  +  L   +E++ EELE+   ++ K   E K +       L E  + + E   +  
Sbjct: 890  ERDELEAQLRE-LERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGEDEEIPE 948

Query: 667  KRLDLERMEINMDR-QRRDREWAELNN----SIEELMVQRQKLEEQRQLLHADREEIQAE 721
            + L LE ++  + R +   R    +N       EE++ +  +L+E+R  L  +R+ I   
Sbjct: 949  EELSLEDVQAELQRVEEEIRALEPVNMLAIQEYEEVLKRLDELKEKRAKLEEERKAIL-- 1006

Query: 722  SERLKKLEDLK 732
             ER+++ E  K
Sbjct: 1007 -ERIEEYEKKK 1016

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 41.6 bits (98), Expect = 0.002
 Identities = 36/257 (14%), Positives = 105/257 (40%), Gaps = 15/257 (5%)

Query: 44  RDKAALIAYIAKLETEIFEHQHHMGLLILEKKELASKYEQI--KASAEAAELLQKHDRAS 101
           R+ ++L + + ++E  + E    +     +  E+  + EQ+  +       L +  +  S
Sbjct: 688 RELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLS 747

Query: 102 HLS-AIAEARKREESLKKTLGVEKECIASLEKAVHEIRAESAETKV--------AADSKF 152
            L   I   +   + L+  +   +E +  LE+A++++ A  + +++          + + 
Sbjct: 748 SLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEARLSHSRIPEIQAELSKLEEEV 807

Query: 153 AEARCMVENAQKKFAEAEAKLHAAESLQAEANRYHRSAERKLQEVVAREDDLSRRIASFK 212
           +     +   ++K      +    E    E        + +++ +    ++L+ +    +
Sbjct: 808 SRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELE 867

Query: 213 ADCEEKEREIIRERQSLSDRKKILQQEHERLLDAQTLLNEREDHILSKLQELSRKEKELE 272
            + EE E  +    + L  R   L++E + L      L  + + + +++++  ++  EL+
Sbjct: 868 EELEELEAAL----RDLESRLGDLKKERDELEAQLRELERKIEELEAQIEKKRKRLSELK 923

Query: 273 ASRANVEEKFKALNEEK 289
           A    +EE+   + + K
Sbjct: 924 AKLEALEEELSEIEDPK 940

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|216531 pfam01496, V_ATPase_I, V-type ATPase 116kDa subunit family

 Score = 41.6 bits (98), Expect = 0.003
 Identities = 65/306 (21%), Positives = 108/306 (35%), Gaps = 66/306 (21%)

Query: 376 ELRDL----DLGQREESLLEREHDLEVQSRALVDKEKDLV-ERSHLLEEKENKLIAFEKE 430
           ++RDL       QR+     R    +   R L   E  +      L +      +   KE
Sbjct: 11  QIRDLNEDVSAFQRKFVNEVR--RCDEVERKLRKLESKIKKLGIPLKDTGGKPDVPPSKE 68

Query: 431 -ADLKKSL--LQKEKEEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEAMKSEAGELSVLE 487
             DL++ +  L+ E +EV      L+K ++ L+E    ++  K  L+    E  ELS L+
Sbjct: 69  FLDLEEEILDLEAEIKEVEENLESLEKEINELEEWLNVLDEEKSFLDENLEELSELSNLD 128

Query: 488 IKLKEELDVVRAQKLELMVETDKLQLEKA-KFEAE-WEMIDE--KREELRKEAERVAVER 543
           I  K    +  A+ L+L      +  EK   FE E W       ++ E+ +  E      
Sbjct: 129 IDFK---YLRGAEGLKLGFVAGVINREKLEAFERELWRACRGYIRQAEIEEPLEDPKKTV 185

Query: 544 VVVSKSLKDERDSLRQERDAMRDQHKRDVDSLNREREEFMNKMVHEHSEWFTKIQQERAD 603
            ++    K++ D +++  D+       DV     ER E ++K                  
Sbjct: 186 FIIFFVGKEDLDKVKKILDSFG-FELYDVPETEGERSELISK------------------ 226

Query: 604 FLLGIEMQKRDLENCIEKRREELESSFREREKAFEEEKMREFQQISSLKEKAEKEL---- 659
                          + KR EEL+    + E   E+              K   EL    
Sbjct: 227 ---------------VNKRIEELQRVLEQTESHLEKVL-----------VKIADELLAWD 260

Query: 660 EQVTLE 665
           EQV+ E
Sbjct: 261 EQVSKE 266

This family consists of the 116kDa V-type ATPase (vacuolar (H+)-ATPases) subunits, as well as V-type ATP synthase subunit i. The V-type ATPases family are proton pumps that acidify intracellular compartments in eukaryotic cells for example yeast central vacuoles, clathrin-coated and synaptic vesicles. They have important roles in membrane trafficking processes. The 116kDa subunit (subunit a) in the V-type ATPase is part of the V0 functional domain responsible for proton transport. The a subunit is a transmembrane glycoprotein with multiple putative transmembrane helices it has a hydrophilic amino terminal and a hydrophobic carboxy terminal. It has roles in proton transport and assembly of the V-type ATPase complex. This subunit is encoded by two homologous gene in yeast VPH1 and STV1. Length = 707

>gnl|CDD|224188 COG1269, NtpI, Archaeal/vacuolar-type H+-ATPase subunit I [Energy production and conversion]

 Score = 40.8 bits (96), Expect = 0.004
 Identities = 57/321 (17%), Positives = 107/321 (33%), Gaps = 45/321 (14%)

Query: 425 IAFEKEADLKKSLLQKEKEEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEAMKSEAGELS 484
           I   K       +L +  +   +   DL++    L E         +KL+  +     LS
Sbjct: 11  IIGLK--SELDPVLAELHDFGLVHLEDLEEGEKGLKEL--------EKLKVAEVAQISLS 60

Query: 485 VLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVERV 544
            L  ++ + L  V+     L      L  E  K EAE + ++E  +   K +  V     
Sbjct: 61  SLLSEVLDYLRSVK----GLEGRLFILPEEVEKLEAELKSLEEVIKPAEKFSSEVEELT- 115

Query: 545 VVSKSLKDERDSLRQERDAMRDQHKRDVDSLNREREEFMNKMVHEHSEWFTKIQQERADF 604
                  +ER S   E          D++ L  E E         + ++   + +     
Sbjct: 116 ----RKLEERLSELDEE-------LEDLEDLLEELEPL------AYLDFDLSLLRGLKFL 158

Query: 605 LLGIEMQKRDLENCIEKRREELESSFREREK-AFEEEKMREFQQISSLKEKAEKELEQVT 663
           L+ + + +R+       + E L     +      E  +      ++   E  +K  +   
Sbjct: 159 LVRLGLVRRE-------KLEALVGVIEDEVALYGENVEASVVIVVAHGAEDLDKVSKI-- 209

Query: 664 LEIKRLDLERMEINMDRQRRDREWAELNNSIEELMVQRQKL-EEQRQLLHADREEIQAES 722
             +  L  E  E+           +EL   I E+  + + L  E   L     EE+ A  
Sbjct: 210 --LNELGFELYEVPEFDGGPSELISELEEVIAEIQDELESLRSELEALAEKIAEELLAVR 267

Query: 723 ERLKKLEDLKIAVDYMAVSEM 743
           E L+  + L   +  +A +E 
Sbjct: 268 EILEIEKALGDVLSKLARTEY 288

Length = 660

>gnl|CDD|218661 pfam05622, HOOK, HOOK protein

 Score = 40.9 bits (96), Expect = 0.004
 Identities = 121/512 (23%), Positives = 212/512 (41%), Gaps = 97/512 (18%)

Query: 257 ILSKLQELSRKEK----------ELEASRANVEEKFKALNEEKSNLDLTLVSLLKREEAV 306
           +++ +QEL  KE+           L+       E  K   EEK  L      L K+   +
Sbjct: 146 VMTAIQELMSKEQGSSPSRESAGNLDQQLKKALEDLKEAQEEKDELAQRCHELDKQVLLL 205

Query: 307 IEREASLQKKEQKLLVSQE----------TLASKESNEIQKIIANHESALRVKQSEFEAE 356
            E + SLQ++ +KL                L SK+ N +Q  +       ++++  F  E
Sbjct: 206 QEEKNSLQQENEKLQERLAQLEGSSLGPNQLGSKKYNLLQSQLE------QLQEENFRLE 259

Query: 357 LAIK-YKLAEDEIEKKRRAWELRDLDLGQREESLLEREHDLEVQSRALVDKEKDLVERSH 415
            A   Y++  +E+EK+         +L  R + L      L  +S+AL D+   L E S 
Sbjct: 260 AARDDYRIKCEELEKEL-------AELQHRNDEL----TSLAAESQALKDEIDVLRESSD 308

Query: 416 LLEEKENKLIAFEKE----ADLKKSLLQKEKEEVNIIKSDLQKSLSSLDEKKKQVNCAKD 471
             ++ E ++  ++K+     DL++ +   E+     +++ +Q     L+E+ K+ N A+ 
Sbjct: 309 KAKKLEAQVETYKKKLEDLNDLRRQVKLLEERNAMYMQNTVQ-----LEEELKKANAARG 363

Query: 472 KLEAMKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREE 531
           +LE  K +  EL     KL EE             + DKL+ E  + E       EK E 
Sbjct: 364 QLETYKRQVQELHA---KLSEE-----------SKKADKLEFEYKRLE-------EKLEA 402

Query: 532 LRKEAERVAVERVVVSKSLKDERDSLRQERDAMR-----DQHKRDVDSLNREREEFMNKM 586
           L+KE ER           L  ERDSLR+  + +R            D+      + +   
Sbjct: 403 LQKEKER-----------LLAERDSLRETNEELRCGQAQQDQLTQADAGTSPSGDNLAAE 451

Query: 587 VH--EHSEWFTKIQQERADFLLGIEMQKR----DLENCIE---KRREELESSFREREKAF 637
           +   E+ E   ++Q E     LG E  +     +L+  +E   +R  ELE+  R   +  
Sbjct: 452 LLPSEYREKLIRLQHENKMLRLGQEGSENERITELQQLLEDANRRNNELETQLRLANQRI 511

Query: 638 EEEKMREFQQISSLKEKAEKELEQVTLEIK-RLDLER-MEINMDRQRRDREWAELNNSIE 695
            E + +      +L+E+  K  +   L+ K    LE+  E N + Q++  +  EL    +
Sbjct: 512 LELQQQVEDLQKALQEQGSKSEDSSLLKSKLEEHLEQLHEANEELQKKREQIEELEPDQD 571

Query: 696 ELMVQRQKLEEQRQLLHADREEIQAESERLKK 727
           + + +  K+ E    L    E+++A  ER KK
Sbjct: 572 QNLSR--KIAELEAALQKKDEDMRAMEERYKK 601

This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the human gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three human HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes, whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head. Length = 713

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	1075
PRK02224	880	chromosome segregation protein; Provisional	99.45
KOG0161	1930	consensus Myosin class II heavy chain [Cytoskeleto	99.32
PRK02224	880	chromosome segregation protein; Provisional	99.17
TIGR00606	1311	rad50 rad50. This family is based on the phylogeno	99.13
TIGR00606	1311	rad50 rad50. This family is based on the phylogeno	99.09
PRK03918	880	chromosome segregation protein; Provisional	98.9
TIGR02168	1179	SMC_prok_B chromosome segregation protein SMC, com	98.76
TIGR02168	1179	SMC_prok_B chromosome segregation protein SMC, com	98.68
PRK03918	880	chromosome segregation protein; Provisional	98.61
KOG0161	1930	consensus Myosin class II heavy chain [Cytoskeleto	98.51
PRK01156	895	chromosome segregation protein; Provisional	98.43
PRK01156	895	chromosome segregation protein; Provisional	98.37
COG1196	1163	Smc Chromosome segregation ATPases [Cell division	98.31
PF12128	1201	DUF3584: Protein of unknown function (DUF3584); In	98.31
TIGR02169	1164	SMC_prok_A chromosome segregation protein SMC, pri	98.28
TIGR02169	1164	SMC_prok_A chromosome segregation protein SMC, pri	98.22
KOG1029	1118	consensus Endocytic adaptor protein intersectin [S	97.87
COG0419	908	SbcC ATPase involved in DNA repair [DNA replicatio	97.83
COG1196	1163	Smc Chromosome segregation ATPases [Cell division	97.72
PF07888	546	CALCOCO1: Calcium binding and coiled-coil domain (	97.62
PF10174	775	Cast: RIM-binding protein of the cytomatrix active	97.61
KOG4674	1822	consensus Uncharacterized conserved coiled-coil pr	97.56
COG0419	908	SbcC ATPase involved in DNA repair [DNA replicatio	97.52
PF01576	859	Myosin_tail_1: Myosin tail; InterPro: IPR002928 Mu	97.41
PF07888	546	CALCOCO1: Calcium binding and coiled-coil domain (	97.05
KOG0250	1074	consensus DNA repair protein RAD18 (SMC family pro	96.93
PF00261	237	Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop	96.82
PF00261	237	Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop	96.74
PRK12704	520	phosphodiesterase; Provisional	96.34
PF10174	775	Cast: RIM-binding protein of the cytomatrix active	96.32
PRK11637	428	AmiB activator; Provisional	96.32
PF00038	312	Filament: Intermediate filament protein; InterPro:	96.26
PRK11637	428	AmiB activator; Provisional	96.19
KOG4674	1822	consensus Uncharacterized conserved coiled-coil pr	96.17
KOG0964	1200	consensus Structural maintenance of chromosome pro	96.03
PF12128	1201	DUF3584: Protein of unknown function (DUF3584); In	96.02
TIGR03319	514	YmdA_YtgF conserved hypothetical protein YmdA/YtgF	95.92
PF08317	325	Spc7: Spc7 kinetochore protein; InterPro: IPR01325	95.75
PRK00106	535	hypothetical protein; Provisional	95.67
PF01576	859	Myosin_tail_1: Myosin tail; InterPro: IPR002928 Mu	95.6
PHA02562	562	46 endonuclease subunit; Provisional	95.34
PRK12704	520	phosphodiesterase; Provisional	95.12
KOG0018	1141	consensus Structural maintenance of chromosome pro	95.04
TIGR03319	514	YmdA_YtgF conserved hypothetical protein YmdA/YtgF	94.88
PRK00106	535	hypothetical protein; Provisional	94.85
KOG0977	546	consensus Nuclear envelope protein lamin, intermed	94.38
PRK04863	1486	mukB cell division protein MukB; Provisional	94.17
PF12072	201	DUF3552: Domain of unknown function (DUF3552); Int	94.02
PHA02562	562	46 endonuclease subunit; Provisional	93.72
KOG0964	1200	consensus Structural maintenance of chromosome pro	93.38
PF05701	522	WEMBL: Weak chloroplast movement under blue light;	92.81
PF13851	201	GAS: Growth-arrest specific micro-tubule binding	92.1
KOG1029	1118	consensus Endocytic adaptor protein intersectin [S	92.1
KOG0996	1293	consensus Structural maintenance of chromosome pro	91.78
PF12072	201	DUF3552: Domain of unknown function (DUF3552); Int	91.6
COG1340	294	Uncharacterized archaeal coiled-coil protein [Func	90.67
PF00038	312	Filament: Intermediate filament protein; InterPro:	90.06
PRK12705	508	hypothetical protein; Provisional	89.78
PF05667	594	DUF812: Protein of unknown function (DUF812); Inte	88.2
TIGR03185	650	DNA_S_dndD DNA sulfur modification protein DndD. T	87.44
PF05557	722	MAD: Mitotic checkpoint protein; InterPro: IPR0086	87.03
PF05557	722	MAD: Mitotic checkpoint protein; InterPro: IPR0086	85.49
KOG0612	1317	consensus Rho-associated, coiled-coil containing p	85.26
smart00787	312	Spc7 Spc7 kinetochore protein. This domain is foun	85.12
PF08317	325	Spc7: Spc7 kinetochore protein; InterPro: IPR01325	84.58
PRK09039	343	hypothetical protein; Validated	81.93
PF12718	143	Tropomyosin_1: Tropomyosin like; InterPro: IPR0005	81.48
KOG0994	1758	consensus Extracellular matrix glycoprotein Lamini	81.24
TIGR01005	754	eps_transp_fam exopolysaccharide transport protein	80.51

>PRK02224 chromosome segregation protein; Provisional

Probab=99.45  E-value=1.1e-06  Score=105.56  Aligned_cols=15  Identities=20%  Similarity=0.372  Sum_probs=11.2

Q ss_pred             hhhcHHHHHHHHHHH
Q 001447           42 KRRDKAALIAYIAKL   56 (1075)
Q Consensus        42 ~rrD~~aLia~IskL   56 (1075)
                      ...+|..++..|..|
T Consensus       147 ~p~~R~~ii~~l~~l  161 (880)
T PRK02224        147 TPSDRQDMIDDLLQL  161 (880)
T ss_pred             CHHHHHHHHHHHhCC
Confidence            456788888888765

>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]

Probab=99.32  E-value=2.8e-05  Score=100.87  Aligned_cols=369  Identities=21%  Similarity=0.295  Sum_probs=215.3

Q ss_pred             hHHHHhhhhhhHHHHHHHHhhhHHHHHHHHHHHH---HhhhhhhhhhHHHHHhhhhhHHHhHHHHH----HhhhhHHHHh
Q 001447          342 HESALRVKQSEFEAELAIKYKLAEDEIEKKRRAW---ELRDLDLGQREESLLEREHDLEVQSRALV----DKEKDLVERS  414 (1075)
Q Consensus       342 h~a~L~~Kk~eFElElE~krKs~eeEle~K~~~~---E~rEvel~h~Eekl~kREqaLe~k~~~lk----EKEkdl~~Ks  414 (1075)
                      ..+.++..++++..+++....-+++-......-.   .++|.++..+-..+.+.....+.+...+.    +.=.++.+-+
T Consensus      1119 ~r~K~ek~r~dL~~ele~l~~~Lee~~~~t~~q~e~~~k~e~e~~~l~~~leee~~~~e~~~~~lr~~~~~~~~el~~ql 1198 (1930)
T KOG0161|consen 1119 SRAKAERQRRDLSEELEELKEELEEQGGTTAAQLELNKKREAEVQKLRRDLEEETLDHEAQIEELRKKHADSLAELQEQL 1198 (1930)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3455667777777777777777776644333333   35666666655555555544444444443    2334455666


Q ss_pred             hhhHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHH
Q 001447          415 HLLEEKENKLIAFEKEADLKKSLLQKEKEEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEAMKSEAGELSVLEIKLKEEL  494 (1075)
Q Consensus       415 k~LKEkEksL~aeEK~le~ek~~L~~ekEel~~lK~dlEK~~a~~e~q~~qi~ee~E~LkiteeER~E~~~LQ~eLKeEI  494 (1075)
                      ..++.....+......++.+-..|..+-..+...+.++++..-.++   .++.+.+.++.-...-++++..-.++|..|+
T Consensus      1199 e~l~~~k~~lekek~~lq~e~~~l~~ev~~~~~~k~~~e~~~k~~E---~~l~elq~k~~~~~~~~~~l~~q~~~l~~E~ 1275 (1930)
T KOG0161|consen 1199 EQLQKDKAKLEKEKSDLQREIADLAAELEQLSSEKKDLEKKDKKLE---AQLSELQLKLDEQERLRNDLTAKRSRLQNEN 1275 (1930)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Confidence            6666666666666667777777777777777777777777776666   4566667777777777778888888889999


Q ss_pred             HHHHHHHHHhHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhhhhh
Q 001447          495 DVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVERVVVSKSLKDERDSLRQERDAMRDQHKRDVDS  574 (1075)
Q Consensus       495 d~~R~Qke~LlkEae~Lk~eKekFE~EWE~LDEKR~el~KEa~~I~eEre~lek~~~~E~erLK~Ek~~~r~~~krelE~  574 (1075)
                      ..+=.|.++....+..+-..+..|+.+-+.+   +.++.    ..+..+-++..-+.    ++..+.+.++.+|.-+.+.
T Consensus      1276 ~~l~~~lee~e~~~~~~~r~~~~~~~qle~~---k~qle----~e~r~k~~l~~~l~----~l~~e~~~l~e~leee~e~ 1344 (1930)
T KOG0161|consen 1276 EELSRQLEEAEAKLSALSRDKQALESQLEEL---KRQLE----EETREKSALENALR----QLEHELDLLREQLEEEQEA 1344 (1930)
T ss_pred             HHHhhHhHHHHHHHHHHHHHHHHHHHHHHHH---HHHHH----HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
Confidence            8888888888888888888888888887766   33333    33444444443332    4555677777777766666


Q ss_pred             hhhhHHHHHHhhhhhhhhHHHHHHHHHHHhhhhhHhhhhhhHHHHHHHHHHHHhH-------------------------
Q 001447          575 LNREREEFMNKMVHEHSEWFTKIQQERADFLLGIEMQKRDLENCIEKRREELESS-------------------------  629 (1075)
Q Consensus       575 L~~ekEsF~~~MehErs~~~eKiq~Erad~l~d~EmqkreLE~~iq~RqEEiE~~-------------------------  629 (1075)
                      ...-.-. ..+-.-+=+.|-.|++....+-+-+++.-|+.|...++.-++.+|-.                         
T Consensus      1345 ~~~l~r~-lsk~~~e~~~~~~k~e~~~~~~~eelee~kk~l~~~lq~~qe~~e~~~~~~~~Lek~k~~l~~el~d~~~d~ 1423 (1930)
T KOG0161|consen 1345 KNELERK-LSKANAELAQWKKKFEEEVLQRLEELEELKKKLQQRLQELEEQIEAANAKNASLEKAKNRLQQELEDLQLDL 1423 (1930)
T ss_pred             HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence            5421100 11112233445555555555555555555555555554444444322                         


Q ss_pred             ---------HHHHHHHHHH---HHHHHhhhhhhHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhhhhhHHHHHHHhhHHHH
Q 001447          630 ---------FREREKAFEE---EKMREFQQISSLKEKAEKELEQVTLEIKRLDLERMEINMDRQRRDREWAELNNSIEEL  697 (1075)
Q Consensus       630 ---------L~EREk~FEe---ek~~EL~~IN~lkE~a~kE~Eev~lE~~rLekER~Ei~~~ke~le~e~aEm~kdIeeL  697 (1075)
                               |..+-+.|+.   +-.+-...+....+.+.++..+...+..++...=.+.....+.+.++-..|...|.+|
T Consensus      1424 ~~~~~~~~~le~k~k~f~k~l~e~k~~~e~l~~Eld~aq~e~r~~~tel~kl~~~lee~~e~~e~l~renk~l~~ei~dl 1503 (1930)
T KOG0161|consen 1424 ERSRAAVAALEKKQKRFEKLLAEWKKKLEKLQAELDAAQRELRQLSTELQKLKNALEELLEQLEELRRENKNLSQEIEDL 1503 (1930)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                     2222233322   1222334445555556666666666666666555555555555555555555555555


Q ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHh
Q 001447          698 MVQRQKLEEQRQLLHADREEIQAESERL  725 (1075)
Q Consensus       698 ~~ls~KLk~QRE~~~~ERe~fl~~vEkl  725 (1075)
                      ..+-.-+-.-...+...+..+-..++.+
T Consensus      1504 ~~~~~e~~k~v~elek~~r~le~e~~el 1531 (1930)
T KOG0161|consen 1504 EEQKDEGGKRVHELEKEKRRLEQEKEEL 1531 (1930)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5555555555555555555544444333

>PRK02224 chromosome segregation protein; Provisional

Probab=99.17  E-value=6.1e-05  Score=90.94  Aligned_cols=93  Identities=13%  Similarity=0.200  Sum_probs=64.3

Q ss_pred             HHHhhHhhhhhhhhHHHHHHhHHHHHHHHHhhhhhhhhhhhhhhhHHHHHHHHHhhhhHHHHHhhhhhhHHHHHHhcchh
Q 001447          109 ARKREESLKKTLGVEKECIASLEKAVHEIRAESAETKVAADSKFAEARCMVENAQKKFAEAEAKLHAAESLQAEANRYHR  188 (1075)
Q Consensus       109 aeKREEnLkKALgvEKqCVadLEKAL~emr~E~AeiK~tsesKLaEA~aLv~~~eeKslEvE~KL~aAea~~AEa~Rk~s  188 (1075)
                      ...|.+=+.+.+|+. . +-.+...+.+.+..+..++-...+++......+..  .....+...|..+...++++....+
T Consensus       148 p~~R~~ii~~l~~l~-~-~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~l~~~l~~~~~~l~el~~~i~  223 (880)
T PRK02224        148 PSDRQDMIDDLLQLG-K-LEEYRERASDARLGVERVLSDQRGSLDQLKAQIEE--KEEKDLHERLNGLESELAELDEEIE  223 (880)
T ss_pred             HHHHHHHHHHHhCCH-H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            457888899999983 3 35567778888888888888888888888777766  2245566667777777776666666


Q ss_pred             HHhhhhHHHhhhhhHHH
Q 001447          189 SAERKLQEVVAREDDLS  205 (1075)
Q Consensus       189 ~aeRkL~eVEaRE~~Lr  205 (1075)
                      .+...+..+...-..|.
T Consensus       224 ~~~~~~~~l~~~l~~l~  240 (880)
T PRK02224        224 RYEEQREQARETRDEAD  240 (880)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            66555555544444443

>TIGR00606 rad50 rad50

Probab=99.13  E-value=0.00016  Score=91.83  Aligned_cols=75  Identities=8%  Similarity=0.034  Sum_probs=52.3

Q ss_pred             HhHHHHHHHHHhhhhhhhhhhhhhhhHHHHHHHHHhhhhHHHHHhhhhhhHHHHHHhcchhHHhhhhHHHhhhhh
Q 001447          128 ASLEKAVHEIRAESAETKVAADSKFAEARCMVENAQKKFAEAEAKLHAAESLQAEANRYHRSAERKLQEVVARED  202 (1075)
Q Consensus       128 adLEKAL~emr~E~AeiK~tsesKLaEA~aLv~~~eeKslEvE~KL~aAea~~AEa~Rk~s~aeRkL~eVEaRE~  202 (1075)
                      ..|.+.++....+....+-..+..+..+..-+..+..+....+..+..+........+....+.++|..+..-++
T Consensus       397 ~~~~~~~~~~~~~~~~~~~e~~~~~~~~q~~L~ei~~~l~~~eq~~~~~~e~~~~~~~~i~~~~~~l~~~~~~~~  471 (1311)
T TIGR00606       397 TLVIERQEDEAKTAAQLCADLQSKERLKQEQADEIRDEKKGLGRTIELKKEILEKKQEELKFVIKELQQLEGSSD  471 (1311)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccChH
Confidence            446677777777777777777777777777777777777777777777766666666666666666665554444

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>TIGR00606 rad50 rad50

Probab=99.09  E-value=0.00023  Score=90.49  Aligned_cols=77  Identities=12%  Similarity=0.170  Sum_probs=40.0

Q ss_pred             HHhhhhhhHHHHHHhcchhHHhhhhHHHhhhhhHHHHHHhHhhhhhhhHHHHHHHHHhchHHHHHHHHHHHHHHHHHh
Q 001447          170 EAKLHAAESLQAEANRYHRSAERKLQEVVAREDDLSRRIASFKADCEEKEREIIRERQSLSDRKKILQQEHERLLDAQ  247 (1075)
Q Consensus       170 E~KL~aAea~~AEa~Rk~s~aeRkL~eVEaRE~~LrRerlSf~~E~ea~E~~~~~qRe~L~eweKkLqe~eerL~e~q  247 (1075)
                      ...+.+....+..++.....+++.+..++..-..++++.-....+..++...|. +-....+.+..|.+.+..|-..+
T Consensus       576 ~~~~~~~~~el~~~~~~~~~~~~el~~~e~~l~~~~~~l~~~~~eL~~~~~~i~-~~~~~~~~~~~L~~~~~~l~~~~  652 (1311)
T TIGR00606       576 EDWLHSKSKEINQTRDRLAKLNKELASLEQNKNHINNELESKEEQLSSYEDKLF-DVCGSQDEESDLERLKEEIEKSS  652 (1311)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCCchhHHHHHHHHHHHHHHHH
Confidence            444444444455555555555555555555555555555555555555555555 21244555555555555555555

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PRK03918 chromosome segregation protein; Provisional

Probab=98.90  E-value=0.00064  Score=82.00  Aligned_cols=42  Identities=7%  Similarity=0.143  Sum_probs=23.2

Q ss_pred             hhhhhhHHHHHHHHHhchHHHHHHHHHHHHHHHHHhhhhhhh
Q 001447          212 KADCEEKEREIIRERQSLSDRKKILQQEHERLLDAQTLLNER  253 (1075)
Q Consensus       212 ~~E~ea~E~~~~~qRe~L~eweKkLqe~eerL~e~q~~LNqR  253 (1075)
                      ..+....+..+..-...+.+|+..+.+.+.++...+.+..+.
T Consensus       244 ~~~~~~l~~~~~~l~~~i~~l~~el~~l~~~l~~l~~~~~~~  285 (880)
T PRK03918        244 EKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKEL  285 (880)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444445554545556666666666666666655555443

>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type

Probab=98.76  E-value=0.0018  Score=78.79  Aligned_cols=10  Identities=0%  Similarity=-0.120  Sum_probs=4.7

Q ss_pred             HHHHHHHHHh
Q 001447          808 WIKRFADLVF  817 (1075)
Q Consensus       808 WlrKCTskIF  817 (1075)
                      =|.+++..+|
T Consensus      1018 ~i~~~~~~~f 1027 (1179)
T TIGR02168      1018 TLEEAIEEID 1027 (1179)
T ss_pred             HHHHHHHHHH
Confidence            3444445555

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.

>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type

Probab=98.68  E-value=0.0032  Score=76.75  Aligned_cols=29  Identities=21%  Similarity=0.296  Sum_probs=14.1

Q ss_pred             hhhhhhhHHHHHHHhhHHHHHHHHHHHHH
Q 001447          678 MDRQRRDREWAELNNSIEELMVQRQKLEE  706 (1075)
Q Consensus       678 ~~ke~le~e~aEm~kdIeeL~~ls~KLk~  706 (1075)
                      .....+..+..++...++.|...-.++.+
T Consensus       993 er~~~l~~q~~dL~~~~~~L~~~i~~i~~ 1021 (1179)
T TIGR02168       993 EEYEELKERYDFLTAQKEDLTEAKETLEE 1021 (1179)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33344445555555555555555444443

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.

>PRK03918 chromosome segregation protein; Provisional

Probab=98.61  E-value=0.0045  Score=74.93  Aligned_cols=16  Identities=19%  Similarity=0.136  Sum_probs=9.8

Q ss_pred             cCCCCcHHHHHHHHHc
Q 001447           19 QSPLSDESIWKRLKEA   34 (1075)
Q Consensus        19 ~~~~~d~~iWkr~~ea   34 (1075)
                      .+++|-..+...+.=|
T Consensus        31 ~nG~GKStil~ai~~~   46 (880)
T PRK03918         31 QNGSGKSSILEAILVG   46 (880)
T ss_pred             CCCCCHHHHHHHHHHH
Confidence            4556677776665543

>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]

Probab=98.51  E-value=0.017  Score=76.29  Aligned_cols=282  Identities=22%  Similarity=0.223  Sum_probs=146.5

Q ss_pred             CChHHHhhhcHH--HHHHHHHHHHHHHhhhhhccchhheehhhhhhhHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHhh
Q 001447           36 LDEVSIKRRDKA--ALIAYIAKLETEIFEHQHHMGLLILEKKELASKYEQIKASAEAAELLQKHDRASHLSAIAEARKRE  113 (1075)
Q Consensus        36 ~De~S~~rrD~~--aLia~IskLE~ElydYQynMGLLLiEkKEwtSK~eelkqa~~eae~~lKREqaAhl~ALsEaeKRE  113 (1075)
                      -+++-|..+|..  .|-..+.+-|+..=++--+|--++-|+-.++.....=+.-.+++++.+.+..+.-.-+=.++    
T Consensus       835 ~~ee~~~~~~~e~~~l~~~l~~~e~~~~ele~~~~~~~~e~~~l~~~l~~e~~~~~~aee~~~~~~~~k~~le~~l----  910 (1930)
T KOG0161|consen  835 KTEEEMRAKEEEIQKLKEELQKSESKRKELEEKLVKLLEEKNDLQEQLQAEKENLAEAEELLERLRAEKQELEKEL----  910 (1930)
T ss_pred             hhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----
Confidence            356666666543  34556666677777888888888888888888887777788888888888776544321111    


Q ss_pred             HhhhhhhhhHHHHHHhHHHHHHHHHhhhhhhh-----------------hhhhhhhhHHHHHHHHHhhhhHHHHHhhhhh
Q 001447          114 ESLKKTLGVEKECIASLEKAVHEIRAESAETK-----------------VAADSKFAEARCMVENAQKKFAEAEAKLHAA  176 (1075)
Q Consensus       114 EnLkKALgvEKqCVadLEKAL~emr~E~AeiK-----------------~tsesKLaEA~aLv~~~eeKslEvE~KL~aA  176 (1075)
                      ..+..-+..+..=.++|++-.+++..++.+.+                 .+.+.++-....=+.+    ..+..+||-.+
T Consensus       911 ~~~~~~~e~~ee~~~~le~~~~~~~~e~~~l~~~~~~~E~~~~k~~~Ek~~~e~~~~~l~~e~~~----~~e~~~kL~ke  986 (1930)
T KOG0161|consen  911 KELKERLEEEEEKNAELERKKRKLEQEVQELKEQLEELELTLQKLELEKNAAENKLKNLEEEINS----LDENISKLSKE  986 (1930)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHH
Confidence            11112222222222334444444444433332                 2222222222222222    22333333333


Q ss_pred             hHHHHHHhcchhHHhhhhHHHhhhhhHHHHHHhHhhhhhhhHHHHHHHHHhchHHHHHHHHHHHHHHHHHhhhhhhhhHh
Q 001447          177 ESLQAEANRYHRSAERKLQEVVAREDDLSRRIASFKADCEEKEREIIRERQSLSDRKKILQQEHERLLDAQTLLNEREDH  256 (1075)
Q Consensus       177 ea~~AEa~Rk~s~aeRkL~eVEaRE~~LrRerlSf~~E~ea~E~~~~~qRe~L~eweKkLqe~eerL~e~q~~LNqREe~  256 (1075)
                      ...+-+++|   .+.-.|+.-+..-..|.+....+.+..+..+..+..++....+.+|.....+-.|...|..+..-...
T Consensus       987 kk~lEe~~~---~l~~~l~~~eek~~~l~k~~~kle~~l~~le~~le~e~~~r~e~Ek~~rkle~el~~~~e~~~~~~~~ 1063 (1930)
T KOG0161|consen  987 KKELEERIR---ELQDDLQAEEEKAKSLNKAKAKLEQQLDDLEVTLEREKRIRMELEKAKRKLEGELKDLQESIEELKKQ 1063 (1930)
T ss_pred             HHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence            333333322   22233444444445555555555555666666666666666666655555555555555555444445


Q ss_pred             hHhhHHHHhHhHHHHHHHhhcHHHHHHHHhhhhhhhhHhHHHhhhhHHHHHHHHHHHHHhHHhHHHHHHHHh
Q 001447          257 ILSKLQELSRKEKELEASRANVEEKFKALNEEKSNLDLTLVSLLKREEAVIEREASLQKKEQKLLVSQETLA  328 (1075)
Q Consensus       257 ~~e~~~~l~~kEkeLEe~kkkie~~~~~Lk~ke~dl~~rl~~l~~rEee~~~~~~~Le~KEkELl~leEKL~  328 (1075)
                      ..+-+..++.++-+|-.++.+++.....+....-.|..--+.+..-++++..-+..+.+-|+....|...|.
T Consensus      1064 ~~el~~~l~kke~El~~l~~k~e~e~~~~~~l~k~i~eL~~~i~el~e~le~er~~r~K~ek~r~dL~~ele 1135 (1930)
T KOG0161|consen 1064 KEELDNQLKKKESELSQLQSKLEDEQAEVAQLQKQIKELEARIKELEEELEAERASRAKAERQRRDLSEELE 1135 (1930)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            555555666666666666666665554444433333333333444445555555555555555555555443

>PRK01156 chromosome segregation protein; Provisional

Probab=98.43  E-value=0.013  Score=71.66  Aligned_cols=49  Identities=14%  Similarity=0.174  Sum_probs=22.4

Q ss_pred             hhhhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhh
Q 001447          679 DRQRRDREWAELNNSIEELMVQRQKLEEQRQLLHADREEIQAESERLKK  727 (1075)
Q Consensus       679 ~ke~le~e~aEm~kdIeeL~~ls~KLk~QRE~~~~ERe~fl~~vEklK~  727 (1075)
                      ....+..+...++.+|..|...-..++++-+.+..+...+-.+++.++.
T Consensus       682 ~~~~l~~~l~~l~~~~~~l~~~i~~l~~~~~~l~eel~~~~~~~~~l~~  730 (895)
T PRK01156        682 NLKKSRKALDDAKANRARLESTIEILRTRINELSDRINDINETLESMKK  730 (895)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence            3344444444555555555554444444444444444444444444433

>PRK01156 chromosome segregation protein; Provisional

Probab=98.37  E-value=0.019  Score=70.42  Aligned_cols=58  Identities=14%  Similarity=0.188  Sum_probs=38.9

Q ss_pred             HHHHHHHHHHHHHHHHhHHHHHHhhhhhhhhhHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 001447          653 EKAEKELEQVTLEIKRLDLERMEINMDRQRRDREWAELNNSIEELMVQRQKLEEQRQL  710 (1075)
Q Consensus       653 E~a~kE~Eev~lE~~rLekER~Ei~~~ke~le~e~aEm~kdIeeL~~ls~KLk~QRE~  710 (1075)
                      .....++..+..+..++..+...+..+...+.....++..+|..|..--.++.++...
T Consensus       670 ~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~l~~~i~~l~~~~~~l~eel~~~~~~~~~  727 (895)
T PRK01156        670 KEITSRINDIEDNLKKSRKALDDAKANRARLESTIEILRTRINELSDRINDINETLES  727 (895)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence            3445666777777777777777777777777777777777777666544455444444

>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]

Probab=98.31  E-value=0.034  Score=70.73  Aligned_cols=93  Identities=20%  Similarity=0.249  Sum_probs=58.2

Q ss_pred             HHHHHHHhhhhhccchhheehhhhhhhHHHHHHHHHHHHHH---HhhhhhhhhhHHHHHHHhhHhhhhhhhhHHHHHHhH
Q 001447           54 AKLETEIFEHQHHMGLLILEKKELASKYEQIKASAEAAELL---QKHDRASHLSAIAEARKREESLKKTLGVEKECIASL  130 (1075)
Q Consensus        54 skLE~ElydYQynMGLLLiEkKEwtSK~eelkqa~~eae~~---lKREqaAhl~ALsEaeKREEnLkKALgvEKqCVadL  130 (1075)
                      -.|..++..+++-  +++.+-..+..+++++...+...+.-   +......+.-.+...+.+-+.++..+..-.++...+
T Consensus       216 ~~l~~e~~~~~~~--~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~e~~~~~~~~~~~~~~~  293 (1163)
T COG1196         216 QELKAELRELELA--LLLAKLKELRKELEELEEELSRLEEELEELQEELEEAEKEIEELKSELEELREELEELQEELLEL  293 (1163)
T ss_pred             HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3455566666664  45556667777777777777766633   334444455556666666666776666666777766


Q ss_pred             HHHHHHHHhhhhhhhhhh
Q 001447          131 EKAVHEIRAESAETKVAA  148 (1075)
Q Consensus       131 EKAL~emr~E~AeiK~ts  148 (1075)
                      ...+.++-.+.+.++-..
T Consensus       294 ~~~~~~le~~~~~~~~~~  311 (1163)
T COG1196         294 KEEIEELEGEISLLRERL  311 (1163)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            666777666666665433

>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins

Probab=98.31  E-value=0.035  Score=70.87  Aligned_cols=207  Identities=14%  Similarity=0.275  Sum_probs=148.7

Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhH
Q 001447          479 EAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVERVVVSKSLKDERDSLR  558 (1075)
Q Consensus       479 ER~E~~~LQ~eLKeEId~~R~Qke~LlkEae~Lk~eKekFE~EWE~LDEKR~el~KEa~~I~eEre~lek~~~~E~erLK  558 (1075)
                      ++.+|......|.+++..+..+...+.+..+.+..+.....+.-+.+...-+..+-+.+........+..-......++.
T Consensus       594 ~~pd~~~~ee~L~~~l~~~~~~l~~~~~~~~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  673 (1201)
T PF12128_consen  594 DVPDYAASEEELRERLEQAEDQLQSAEERQEELEKQLKQINKKIEELKREITQAEQELKQAEQDLQRLKNEREQLKQEIE  673 (1201)
T ss_pred             CCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence            46788999999999999999999999999999988888888888888888888877777777766666666677777777


Q ss_pred             HHHHHHHHHHHhhhhhhhhhHHHHHHhhhhhhhhHHHHHHHHHHHhhhhhHhhhhhhHHHHHHHHHHHHhHHHHHHHHHH
Q 001447          559 QERDAMRDQHKRDVDSLNREREEFMNKMVHEHSEWFTKIQQERADFLLGIEMQKRDLENCIEKRREELESSFREREKAFE  638 (1075)
Q Consensus       559 ~Ek~~~r~~~krelE~L~~ekEsF~~~MehErs~~~eKiq~Erad~l~d~EmqkreLE~~iq~RqEEiE~~L~EREk~FE  638 (1075)
                      ..+..-+..+...+..+..+-..|-    .|+..|....+........++--+..+++..+....+.+...+..+...|.
T Consensus       674 ~~~~~~~~~~~~~l~~l~~~l~~~~----~e~~~~~~~~~~~~~e~~~e~~~~~~~~~~~~d~~i~~i~~~i~~~~~~~~  749 (1201)
T PF12128_consen  674 EAKEERKEQIEEQLNELEEELKQLK----QELEELLEELKEQLKELRNELKAQWQELEAELDEQIEQIKQEIAAAKQEAK  749 (1201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7777777777777777776665553    455566666666666666666666666666666666666666665555554


Q ss_pred             H-------HHHHHhhh--hhh-HHHHHHHHHHHHHHHHHHhHHHHHHhhhhhhhhhHHHHH
Q 001447          639 E-------EKMREFQQ--ISS-LKEKAEKELEQVTLEIKRLDLERMEINMDRQRRDREWAE  689 (1075)
Q Consensus       639 e-------ek~~EL~~--IN~-lkE~a~kE~Eev~lE~~rLekER~Ei~~~ke~le~e~aE  689 (1075)
                      +       ....+|..  |+- .-..++++++++..++.+++.-|..|..=+.=+...|..
T Consensus       750 ~~~~~le~~~~~eL~~~GvD~~~I~~l~~~i~~L~~~l~~ie~~r~~V~eY~~~~~~~~~~  810 (1201)
T PF12128_consen  750 EQLKELEQQYNQELAGKGVDPERIQQLKQEIEQLEKELKRIEERRAEVIEYEDWLQEEWDK  810 (1201)
T ss_pred             HHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh
Confidence            4       33344432  221 445567888888889999988888887766666666653

>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type

Probab=98.28  E-value=0.03  Score=68.91  Aligned_cols=16  Identities=25%  Similarity=0.241  Sum_probs=10.3

Q ss_pred             HHHHHHHHHccCChHH
Q 001447           25 ESIWKRLKEAGLDEVS   40 (1075)
Q Consensus        25 ~~iWkr~~eaG~De~S   40 (1075)
                      .++=..|...||+..+
T Consensus       120 ~~~~~~l~~~~~~~~~  135 (1164)
T TIGR02169       120 SEIHDFLAAAGIYPEG  135 (1164)
T ss_pred             HHHHHHHHHcCCCcCc
Confidence            3455568888876543

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.

>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type

Probab=98.22  E-value=0.04  Score=67.94  Aligned_cols=32  Identities=28%  Similarity=0.453  Sum_probs=18.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhh
Q 001447          695 EELMVQRQKLEEQRQLLHADREEIQAESERLK  726 (1075)
Q Consensus       695 eeL~~ls~KLk~QRE~~~~ERe~fl~~vEklK  726 (1075)
                      +++...-..|.+|++.+...+..+...|+.|+
T Consensus       982 ~~~~~~~~~l~~q~~dl~~~~~~l~~~i~~l~ 1013 (1164)
T TIGR02169       982 EEVLKRLDELKEKRAKLEEERKAILERIEEYE 1013 (1164)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33334445566666666666666666666665

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.

>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=97.87  E-value=0.022  Score=69.39  Aligned_cols=217  Identities=24%  Similarity=0.338  Sum_probs=128.1

Q ss_pred             hhhhhhHH---HHHHHHhhhHHHHHHHHHHHHHhhhhh---hhhhH--HHHHhhhhhHHHhHHHHHHhhhhHH-HHhhhh
Q 001447          347 RVKQSEFE---AELAIKYKLAEDEIEKKRRAWELRDLD---LGQRE--ESLLEREHDLEVQSRALVDKEKDLV-ERSHLL  417 (1075)
Q Consensus       347 ~~Kk~eFE---lElE~krKs~eeEle~K~~~~E~rEve---l~h~E--ekl~kREqaLe~k~~~lkEKEkdl~-~Ksk~L  417 (1075)
                      |.|+-.|+   +|||..|+-+++.-...+..++++|.+   -+.+|  ++=.|++-+|++++++--+.|..-+ .+-+.+
T Consensus       316 DKrkeNy~kGqaELerRRq~leeqqqreree~eqkEreE~ekkererqEqErk~qlElekqLerQReiE~qrEEerkkei  395 (1118)
T KOG1029|consen  316 DKRKENYEKGQAELERRRQALEEQQQREREEVEQKEREEEEKKERERQEQERKAQLELEKQLERQREIERQREEERKKEI  395 (1118)
T ss_pred             hhhHHhHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45556665   688888888888777777766666543   22333  3334555667777777666654332 223333


Q ss_pred             HHHHhhhHHHHHH--hHHH-------HHHHHHHHHHHHHHH---HHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhhHHH
Q 001447          418 EEKENKLIAFEKE--ADLK-------KSLLQKEKEEVNIIK---SDLQKSLSSLDEKKKQVNCAKDKLEAMKSEAGELSV  485 (1075)
Q Consensus       418 KEkEksL~aeEK~--le~e-------k~~L~~ekEel~~lK---~dlEK~~a~~e~q~~qi~ee~E~LkiteeER~E~~~  485 (1075)
                      ..+|-.-+-.||.  ++-+       .+|...+.+.|-.+|   ..++--+..|..+++++..--....+-.        
T Consensus       396 e~rEaar~ElEkqRqlewErar~qem~~Qk~reqe~iv~~nak~~ql~~eletLn~k~qqls~kl~Dvr~~~--------  467 (1118)
T KOG1029|consen  396 ERREAAREELEKQRQLEWERARRQEMLNQKNREQEWIVYLNAKKKQLQQELETLNFKLQQLSGKLQDVRVDI--------  467 (1118)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhheecc--------
Confidence            3333322222221  1111       112222333333332   2334444444555555544443333222        


Q ss_pred             HHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhh-------------hh
Q 001447          486 LEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVERVVVSKSL-------------KD  552 (1075)
Q Consensus       486 LQ~eLKeEId~~R~Qke~LlkEae~Lk~eKekFE~EWE~LDEKR~el~KEa~~I~eEre~lek~~-------------~~  552 (1075)
                        ..-|++|+.++-|.+..+.|.+.|+++..              |++.-+.+++-||..|..-+             ++
T Consensus       468 --tt~kt~ie~~~~q~e~~isei~qlqarik--------------E~q~kl~~l~~Ekq~l~~qlkq~q~a~~~~~~~~s  531 (1118)
T KOG1029|consen  468 --TTQKTEIEEVTKQRELMISEIDQLQARIK--------------ELQEKLQKLAPEKQELNHQLKQKQSAHKETTQRKS  531 (1118)
T ss_pred             --chHHHHHHHhhhHHHHHHHHHHHHHHHHH--------------HHHHHHHhhhhHHHHHHHHHHHhhhhccCcchHHH
Confidence              35689999999999999999999988754              34444445555555544322             56


Q ss_pred             hhhhhHHHHHHHHHHHHhhhhhhhhhHHHHHHhhh
Q 001447          553 ERDSLRQERDAMRDQHKRDVDSLNREREEFMNKMV  587 (1075)
Q Consensus       553 E~erLK~Ek~~~r~~~krelE~L~~ekEsF~~~Me  587 (1075)
                      +-+++...|+.++.+++-.++.|+-+.+|=.+.|.
T Consensus       532 ~L~aa~~~ke~irq~ikdqldelskE~esk~~eid  566 (1118)
T KOG1029|consen  532 ELEAARRKKELIRQAIKDQLDELSKETESKLNEID  566 (1118)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            77788888999999999999999998888777776

>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]

Probab=97.83  E-value=0.2  Score=62.43  Aligned_cols=87  Identities=17%  Similarity=0.190  Sum_probs=40.0

Q ss_pred             HHHHHHhcchhHHhhhhHHHhhhhhHHHHHHhHhhh------hhhhHHHHHHHHHhchHHHHHHHHHHHHHHHHHhhhhh
Q 001447          178 SLQAEANRYHRSAERKLQEVVAREDDLSRRIASFKA------DCEEKEREIIRERQSLSDRKKILQQEHERLLDAQTLLN  251 (1075)
Q Consensus       178 a~~AEa~Rk~s~aeRkL~eVEaRE~~LrRerlSf~~------E~ea~E~~~~~qRe~L~eweKkLqe~eerL~e~q~~LN  251 (1075)
                      ..+++..+....+..+++.++.....+....--+..      +.+.....+....+.+..++.++......+.+.....+
T Consensus       274 ~~~~~~~~~~~~~~~~~~~L~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~~~  353 (908)
T COG0419         274 EELRELERLLEELEEKIERLEELEREIEELEEELEGLRALLEELEELLEKLKSLEERLEKLEEKLEKLESELEELAEEKN  353 (908)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344555555555555555555555544444333333      23333333344444444444444444444444444444


Q ss_pred             hhhHhhHhhHHHH
Q 001447          252 EREDHILSKLQEL  264 (1075)
Q Consensus       252 qREe~~~e~~~~l  264 (1075)
                      +...-+.++...+
T Consensus       354 ~~~~~~~~~~~~l  366 (908)
T COG0419         354 ELAKLLEERLKEL  366 (908)
T ss_pred             HHHHHHHHHHHHH
Confidence            4444444443333

>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]

Probab=97.72  E-value=0.34  Score=61.98  Aligned_cols=190  Identities=22%  Similarity=0.286  Sum_probs=102.6

Q ss_pred             HHHHHHHHHccCCh--------------HHHhhhcHHHHHHHH----------HHHHHHHhhhhhccchhheehhhhhhh
Q 001447           25 ESIWKRLKEAGLDE--------------VSIKRRDKAALIAYI----------AKLETEIFEHQHHMGLLILEKKELASK   80 (1075)
Q Consensus        25 ~~iWkr~~eaG~De--------------~S~~rrD~~aLia~I----------skLE~ElydYQynMGLLLiEkKEwtSK   80 (1075)
                      .||=.-|...|++.              .+++..++..|++-+          .+.+..|-.=+=|+--+=.-..+...+
T Consensus       122 ~dI~~l~~~~gi~~~~~~iV~QG~V~~i~~~kp~err~iiEEaaGv~~y~~r~~ea~~~L~~~~~nl~~~~~~~~el~~~  201 (1163)
T COG1196         122 KDIQDLLADSGIGKESYSIVSQGKVEEIINAKPEERRKLIEEAAGVSKYKERKEEAERKLERTEENLERLEDLLEELEKQ  201 (1163)
T ss_pred             HHHHHHHHhcCCCCCCCceeecccHHHHHcCCHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            46777888888743              345677777776644          355667777788888888888888889


Q ss_pred             HHHHHHHHHHHHHHHhhhhhhhhh----HH---HHHHHhhHhhhhhhhhHHHHHHhHHHHHHHHHhhhhhhhhhhhhhhh
Q 001447           81 YEQIKASAEAAELLQKHDRASHLS----AI---AEARKREESLKKTLGVEKECIASLEKAVHEIRAESAETKVAADSKFA  153 (1075)
Q Consensus        81 ~eelkqa~~eae~~lKREqaAhl~----AL---sEaeKREEnLkKALgvEKqCVadLEKAL~emr~E~AeiK~tsesKLa  153 (1075)
                      ++.|+.....|+..++-...-...    .+   ....+.-+.+..+++-=..=+.++...+.+.-.++.    ....++.
T Consensus       202 l~~L~~q~~~a~~y~~l~~e~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~i~----~~~~~~~  277 (1163)
T COG1196         202 LEKLERQAEKAERYQELKAELRELELALLLAKLKELRKELEELEEELSRLEEELEELQEELEEAEKEIE----ELKSELE  277 (1163)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHH
Confidence            988888888887765543322222    22   222222333333333222222223333332222222    2334555


Q ss_pred             HHHHHHHHHhhhhHHHHHhhhhhhHHHHHHhcchhHHhhhhHHHhhhhhHHHHHHhHhhhhhhhH
Q 001447          154 EARCMVENAQKKFAEAEAKLHAAESLQAEANRYHRSAERKLQEVVAREDDLSRRIASFKADCEEK  218 (1075)
Q Consensus       154 EA~aLv~~~eeKslEvE~KL~aAea~~AEa~Rk~s~aeRkL~eVEaRE~~LrRerlSf~~E~ea~  218 (1075)
                      +...-+...+.....+-.++...+...+-+..........+.+...+...+.-.+..+.++....
T Consensus       278 e~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  342 (1163)
T COG1196         278 ELREELEELQEELLELKEEIEELEGEISLLRERLEELENELEELEERLEELKEKIEALKEELEER  342 (1163)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55555555555555555445455555555545555555555555555554544444444444444

>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT)

Probab=97.62  E-value=0.3  Score=58.51  Aligned_cols=44  Identities=18%  Similarity=0.324  Sum_probs=39.7

Q ss_pred             hHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhh
Q 001447          684 DREWAELNNSIEELMVQRQKLEEQRQLLHADREEIQAESERLKK  727 (1075)
Q Consensus       684 e~e~aEm~kdIeeL~~ls~KLk~QRE~~~~ERe~fl~~vEklK~  727 (1075)
                      .=+.+|-++.|.+|+.-=+-+++-.|+|..++-.++..|++|..
T Consensus       409 ~vqlsE~~rel~Elks~lrv~qkEKEql~~EkQeL~~yi~~Le~  452 (546)
T PF07888_consen  409 RVQLSENRRELQELKSSLRVAQKEKEQLQEEKQELLEYIERLEQ  452 (546)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34789999999999999999999999999999999999998863

This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].

>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []

Probab=97.61  E-value=0.39  Score=59.57  Aligned_cols=323  Identities=19%  Similarity=0.272  Sum_probs=192.4

Q ss_pred             hHHHhhhhHHHHHHHHHHHHHhHHhHHHHHHHHhh-----hhh---HHHHHHHHHhHHHHhhhhhhH-------HHHHHH
Q 001447          295 TLVSLLKREEAVIEREASLQKKEQKLLVSQETLAS-----KES---NEIQKIIANHESALRVKQSEF-------EAELAI  359 (1075)
Q Consensus       295 rl~~l~~rEee~~~~~~~Le~KEkELl~leEKL~a-----RE~---~EIQKLldeh~a~L~~Kk~eF-------ElElE~  359 (1075)
                      ....+.-.|-.+..++..|+.+|++...+-+.|--     ++.   ..+|++|+.-    +++...|       |.|+..
T Consensus       181 ~~~~~~~~e~~~~~le~lle~~e~~~~~~r~~l~~~~~~~~~~a~t~alq~~ie~K----d~ki~~lEr~l~~le~Ei~~  256 (775)
T PF10174_consen  181 ALRRIREAEARIMRLESLLERKEKEHMEAREQLHRRLQMERDDAETEALQTVIEEK----DTKIASLERMLRDLEDEIYR  256 (775)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhhcCCCchhHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH
Confidence            33344455666777788888899888666443322     222   3568887764    3444444       555554


Q ss_pred             HhhhHHHHHHHHHHHHHhhhhhhhhhHHHHHhhhhhHHHhHHHHHHhhhhHHHHhhhhHHHHhhhHHHHHHhHHHHHHHH
Q 001447          360 KYKLAEDEIEKKRRAWELRDLDLGQREESLLEREHDLEVQSRALVDKEKDLVERSHLLEEKENKLIAFEKEADLKKSLLQ  439 (1075)
Q Consensus       360 krKs~eeEle~K~~~~E~rEvel~h~Eekl~kREqaLe~k~~~lkEKEkdl~~Ksk~LKEkEksL~aeEK~le~ek~~L~  439 (1075)
                      .+..++---.  -+.-..++++.........|-.  ++.-.=.|..+.-++.+...-|.-....-.....-|+.=+..|-
T Consensus       257 L~~~~~~~~~--~r~~~~k~le~~~s~~~~mK~k--~d~~~~eL~rk~~E~~~~qt~l~~~~~~~~d~r~hi~~lkesl~  332 (775)
T PF10174_consen  257 LRSRGELSEA--DRDRLDKQLEVYKSHSLAMKSK--MDRLKLELSRKKSELEALQTRLETLEEQDSDMRQHIEVLKESLR  332 (775)
T ss_pred             HHhccccccc--chHHHHHHHHHHHhhHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence            4443321111  1222333344444444443321  33334445566666666666666666666666777777788888


Q ss_pred             HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHH
Q 001447          440 KEKEEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEAMKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFE  519 (1075)
Q Consensus       440 ~ekEel~~lK~dlEK~~a~~e~q~~qi~ee~E~LkiteeER~E~~~LQ~eLKeEId~~R~Qke~LlkEae~Lk~eKekFE  519 (1075)
                      +--.....|.+|++-++..++..-.++...+..+..+++|.+-+..==.+|+..+|..=..-..|.+.+|.|...-..=+
T Consensus       333 ~ke~~~~~Lqsdve~Lr~rle~k~~~l~kk~~~~~~~qeE~~~~~~Ei~~l~d~~d~~e~ki~~Lq~kie~Lee~l~ekd  412 (775)
T PF10174_consen  333 AKEQEAEMLQSDVEALRFRLEEKNSQLEKKQAQIEKLQEEKSRLQGEIEDLRDMLDKKERKINVLQKKIENLEEQLREKD  412 (775)
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            88888899999999999999999999999999999999887665444455666666666666666666555543322111


Q ss_pred             HHHhhhHHHHHHHH------------HHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhhhhhhhhhHHHHHHhhh
Q 001447          520 AEWEMIDEKREELR------------KEAERVAVERVVVSKSLKDERDSLRQERDAMRDQHKRDVDSLNREREEFMNKMV  587 (1075)
Q Consensus       520 ~EWE~LDEKR~el~------------KEa~~I~eEre~lek~~~~E~erLK~Ek~~~r~~~krelE~L~~ekEsF~~~Me  587 (1075)
                         ..|++-++.|.            -.++.-..+++.+..-+...+++.-.++..--+.|++++..+...-++|-..+ 
T Consensus       413 ---~ql~~~k~Rl~~~~d~~~~~~~~~~lEea~~eker~~e~l~e~r~~~e~e~~Eele~~~~e~~~lk~~~~~LQ~eL-  488 (775)
T PF10174_consen  413 ---RQLDEEKERLSSQADSSNEDEALETLEEALREKERLQERLEEQRERAEKERQEELETYQKELKELKAKLESLQKEL-  488 (775)
T ss_pred             ---HHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-
Confidence               11222222222            33333333444444444444444444444444667777777777777777655 


Q ss_pred             hhhhhHHHHHHHHHHHhhhhhHhhhhh---hHHHHHHHHHHHHhH
Q 001447          588 HEHSEWFTKIQQERADFLLGIEMQKRD---LENCIEKRREELESS  629 (1075)
Q Consensus       588 hErs~~~eKiq~Erad~l~d~Emqkre---LE~~iq~RqEEiE~~  629 (1075)
                      ||+..-+.-++.+-+.+.-+.+-+..+   |+..+++.++++++-
T Consensus       489 sEk~~~l~~~kee~s~l~s~~~K~~s~i~~l~I~lEk~rek~~kl  533 (775)
T PF10174_consen  489 SEKELQLEDAKEEASKLASSQEKKDSEIERLEIELEKKREKHEKL  533 (775)
T ss_pred             HHHHHHHHHhhhHHHHHhhccchhhhHHHHHHHHHHHhhhHHHHH
Confidence            677777777777777776666555544   446666666666543

Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].

>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]

Probab=97.56  E-value=0.73  Score=61.29  Aligned_cols=454  Identities=18%  Similarity=0.217  Sum_probs=239.5

Q ss_pred             HHhhhcHHHHHHHHHHHHHHHh-------hh---hhccchhheeh-------------hhhh---hhHHHHHHHHHHHHH
Q 001447           40 SIKRRDKAALIAYIAKLETEIF-------EH---QHHMGLLILEK-------------KELA---SKYEQIKASAEAAEL   93 (1075)
Q Consensus        40 S~~rrD~~aLia~IskLE~Ely-------dY---QynMGLLLiEk-------------KEwt---SK~eelkqa~~eae~   93 (1075)
                      +-.+.+.+-|-.+++.|++.|-       .|   +|||..-+.+.             ..++   |+..++++.+-..+.
T Consensus       861 ~~~~~~~~~le~k~~eL~k~l~~~~~~~~~l~~~~~~~d~~~~~~~Lr~~~eq~~~l~~~L~~a~s~i~~yqe~~~s~eq  940 (1822)
T KOG4674|consen  861 DSVSTNIAKLEIKLSELEKRLKSAKTQLLNLDSKSSNEDATILEDTLRKELEEITDLKEELTDALSQIREYQEEYSSLEQ  940 (1822)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHHHHhhccccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3456777888888888888752       11   34666555443             2333   445566778888888


Q ss_pred             HHhhhhhhhhhHHHHHHHhhHhhhhhhhhHHHHHHhHHHHHHHHHhhhhhhhhhhhhhhhHHHHHHHHHhhhhHHHHHhh
Q 001447           94 LQKHDRASHLSAIAEARKREESLKKTLGVEKECIASLEKAVHEIRAESAETKVAADSKFAEARCMVENAQKKFAEAEAKL  173 (1075)
Q Consensus        94 ~lKREqaAhl~ALsEaeKREEnLkKALgvEKqCVadLEKAL~emr~E~AeiK~tsesKLaEA~aLv~~~eeKslEvE~KL  173 (1075)
                      +|.+....|=--..+++.+-+++.+-+.-=..=+..|++-.-.++.+++-.....+++++.+..-+.++..-...+....
T Consensus       941 sl~~~ks~lde~~~~~ea~ie~~~~k~tslE~~ls~L~~~~~~l~~e~~~~~k~~e~~~~~~~~e~~sl~ne~~~~~~~~ 1020 (1822)
T KOG4674|consen  941 SLESVKSELDETRLELEAKIESLHKKITSLEEELSELEKEIENLREELELSTKGKEDKLLDLSREISSLQNELKSLLKAA 1020 (1822)
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhhHHHHHHHhHHHHHHHHHHHHHH
Confidence            99999998888888888888877765544344456677777777777777778888888888887777766554444332


Q ss_pred             hhhhHHHHHHhcchhHHhhhhHHHhhhhhHHHHHHhHhhhhhhhHHHHHHHH---HhchHHHHHHHHHHHHHHHHHhhhh
Q 001447          174 HAAESLQAEANRYHRSAERKLQEVVAREDDLSRRIASFKADCEEKEREIIRE---RQSLSDRKKILQQEHERLLDAQTLL  250 (1075)
Q Consensus       174 ~aAea~~AEa~Rk~s~aeRkL~eVEaRE~~LrRerlSf~~E~ea~E~~~~~q---Re~L~eweKkLqe~eerL~e~q~~L  250 (1075)
                             -.+++..+.+-..          |..++........-|+.++..-   .+.|.....-+......+.+.....
T Consensus      1021 -------s~~~~~~~~~k~d----------l~~~~~~~~~a~~~Ye~el~~ha~~~q~l~kl~ee~~~~~~e~~~Lk~~~ 1083 (1822)
T KOG4674|consen 1021 -------SQANEQIEDLQND----------LKTETEQLRKAQSKYESELVQHADLTQKLIKLREEFAKCNDELLKLKKSR 1083 (1822)
T ss_pred             -------HHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence                   2333333333332          3333344444444444443221   2334444444444444444444444


Q ss_pred             hhhhHhhHhhHHHHhHhHHHHH----HHhhcHH---HHHHHHhhhhhhhhHhHH--HhhhhHHHHHHHHHH--HHHhHHh
Q 001447          251 NEREDHILSKLQELSRKEKELE----ASRANVE---EKFKALNEEKSNLDLTLV--SLLKREEAVIEREAS--LQKKEQK  319 (1075)
Q Consensus       251 NqREe~~~e~~~~l~~kEkeLE----e~kkkie---~~~~~Lk~ke~dl~~rl~--~l~~rEee~~~~~~~--Le~KEkE  319 (1075)
                      -++..-.-+..+-...+++-|+    ...+.|.   ..+..|...=+.+....+  .++.-..-...+...  .--+|++
T Consensus      1084 ~~~~~~l~e~~~~w~E~~~~Leqe~~~~~~~~~~L~~qNslLh~qie~~s~~~~~~n~S~~~~g~sdL~~iv~~LR~Eke 1163 (1822)
T KOG4674|consen 1084 ESRHALLSEQERDWSEKEDALEQEVNELKKRIESLEKQNSLLHDQFEELSQQSAVSNLSAMLLGLSDLQNIVSFLRKEKE 1163 (1822)
T ss_pred             HHHHhHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccccccchHHHHHHHHHHHhHHH
Confidence            4443333333322222222222    2222221   122222222222222222  111111111111110  1124555


Q ss_pred             HHHHHHHHhhhhhHHHHHHHHHhHHHHhhhhhhHHHHHHHHhhhH---------HHHHHHHHHHHH-hhhh------hhh
Q 001447          320 LLVSQETLASKESNEIQKIIANHESALRVKQSEFEAELAIKYKLA---------EDEIEKKRRAWE-LRDL------DLG  383 (1075)
Q Consensus       320 Ll~leEKL~aRE~~EIQKLldeh~a~L~~Kk~eFElElE~krKs~---------eeEle~K~~~~E-~rEv------el~  383 (1075)
                      +..-+-.+.-+|......    +-+.+.....++...|...|.++         +.+|-.++..+. .+|-      +..
T Consensus      1164 i~~tk~~~lk~e~~~L~q----q~~~~~k~i~dL~~sL~~~r~~~q~~a~s~~e~~~i~~~v~~vNll~EsN~~LRee~~ 1239 (1822)
T KOG4674|consen 1164 IAETKLDTLKRENARLKQ----QVASLNRTIDDLQRSLTAERASSQKSAVSDDEHKEILEKVEEVNLLRESNKVLREENE 1239 (1822)
T ss_pred             HHhhhHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHHHHHHHHhHHHHHHHHH
Confidence            555555555555433322    22333444444445555555555         344455555544 2222      223


Q ss_pred             hhHHHHHhhhhhHHHhHHHHHHhhhhHHHHhhhhHHHHhhhHHHHHHhHHHHH-------HH-----HHHHHHHHHHHHH
Q 001447          384 QREESLLEREHDLEVQSRALVDKEKDLVERSHLLEEKENKLIAFEKEADLKKS-------LL-----QKEKEEVNIIKSD  451 (1075)
Q Consensus       384 h~Eekl~kREqaLe~k~~~lkEKEkdl~~Ksk~LKEkEksL~aeEK~le~ek~-------~L-----~~ekEel~~lK~d  451 (1075)
                      +-..++    +.|..+.+++.-.=.-|..-++.|+..=....++=+.|+.+..       .|     ..|+.++.+++.+
T Consensus      1240 ~~~~k~----qEl~~~i~kl~~el~plq~~l~el~~e~~~~~ael~~l~~e~~~wK~R~q~L~~k~k~~d~~~~~kL~~e 1315 (1822)
T KOG4674|consen 1240 ANLEKI----QELRDKIEKLNFELAPLQNELKELKAELQEKVAELKKLEEENDRWKQRNQDLLEKYKDSDKNDYEKLKSE 1315 (1822)
T ss_pred             HHHHHH----HHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHH
Confidence            333333    3444444444433333333334444333333333333333222       12     2347788888888


Q ss_pred             HHHhhhhhHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhhhHHH
Q 001447          452 LQKSLSSLDEKKKQVNCAKDKLEAMKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEK  528 (1075)
Q Consensus       452 lEK~~a~~e~q~~qi~ee~E~LkiteeER~E~~~LQ~eLKeEId~~R~Qke~LlkEae~Lk~eKekFE~EWE~LDEK  528 (1075)
                      |......+++....|.+-...          +.++|-++|...|..-..+..+.++...|+.-+-+.+.-|.-.-++
T Consensus      1316 i~~Lk~el~~ke~~~~el~~~----------~~~~q~~~k~qld~l~~e~~~lt~~~~ql~~~~~rL~~~~~e~~~q 1382 (1822)
T KOG4674|consen 1316 ISRLKEELEEKENLIAELKKE----------LNRLQEKIKKQLDELNNEKANLTKELEQLEDLKTRLAAALSEKNAQ 1382 (1822)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            888888887666666555443          4455578888888888888999999999999999999988876665

>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]

Probab=97.52  E-value=0.53  Score=58.77  Aligned_cols=62  Identities=19%  Similarity=0.231  Sum_probs=27.6

Q ss_pred             hhhhhhHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 001447          477 KSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERV  539 (1075)
Q Consensus       477 eeER~E~~~LQ~eLKeEId~~R~Qke~LlkEae~Lk~eKekFE~EWE~LDEKR~el~KEa~~I  539 (1075)
                      .++...+..+..+|+...+.++.-. ....+.++++..-..+..-|..|.+.-..++......
T Consensus       558 ~~e~~~le~~~~~l~~~~~~~~~~~-~~~~~l~~~r~~~~~~~~~~~~l~~~~~~l~~~~~~~  619 (908)
T COG0419         558 KEELRQLEDRLQELKELLEELRLLR-TRKEELEELRERLKELKKKLKELEERLSQLEELLQSL  619 (908)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            3333344444444444444444333 2223444444344444444555555555554444443

>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril

Probab=97.41  E-value=3.4e-05  Score=94.44  Aligned_cols=507  Identities=21%  Similarity=0.268  Sum_probs=0.0

Q ss_pred             HHHHHHhhHhhhhhhhhHHHHHHhHHHHHHHHHhhhhhhhhhhhhhhhHHHHHHHHHhhhhHHH-------HHhhhhhhH
Q 001447          106 IAEARKREESLKKTLGVEKECIASLEKAVHEIRAESAETKVAADSKFAEARCMVENAQKKFAEA-------EAKLHAAES  178 (1075)
Q Consensus       106 LsEaeKREEnLkKALgvEKqCVadLEKAL~emr~E~AeiK~tsesKLaEA~aLv~~~eeKslEv-------E~KL~aAea  178 (1075)
                      +-+..-|=+.|.--|.-|++--+--||+-++|..|..+++---+.......+.++-.-++-.++       |.--.+-++
T Consensus        41 ~kelq~~i~el~eeLe~Er~~R~kaek~r~dL~~ELe~l~~~Lee~~~~t~aq~E~~kkrE~El~~Lrr~LEe~~~~~e~  120 (859)
T PF01576_consen   41 IKELQARIEELEEELESERQARAKAEKQRRDLSEELEELKERLEEAGGATQAQIELNKKREAELAKLRRDLEEANLQHEA  120 (859)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444444455566666666666666777777777777766444444333333333322222221       222234456


Q ss_pred             HHHHHhcchhHHhhhh----HHHhhhhhHHHHHHhHhhhhhhhHHHHHHHHHhchHHHHHHHHHHHHHHHHHhhhhhhhh
Q 001447          179 LQAEANRYHRSAERKL----QEVVAREDDLSRRIASFKADCEEKEREIIRERQSLSDRKKILQQEHERLLDAQTLLNERE  254 (1075)
Q Consensus       179 ~~AEa~Rk~s~aeRkL----~eVEaRE~~LrRerlSf~~E~ea~E~~~~~qRe~L~eweKkLqe~eerL~e~q~~LNqRE  254 (1075)
                      .+++.-++|+.+--.|    ..+.---..|-+.+-.|..|......++..-=.....-+|.....+.-|.+.+.-+..-+
T Consensus       121 ~~~~lrkkh~~~~~eL~eqle~lqk~k~~lEK~k~~l~~e~~dL~~~l~~~~k~k~~~Ek~~K~lE~qL~El~~klee~e  200 (859)
T PF01576_consen  121 TLAELRKKHQDAVAELNEQLEQLQKQKAKLEKEKSQLEAELDDLQAQLDSLQKAKQEAEKKRKQLEAQLNELQAKLEESE  200 (859)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHH
Confidence            6677777775543222    222222233334444444444444444433333334445666666666666666666666


Q ss_pred             HhhHhhHHHHhHhHHHHHHHhhcHHHHHHHHhhhhhhhhHhHHHhhhhHHHHHHHHHHHHHhHHhHHHHHHHHhhhhhHH
Q 001447          255 DHILSKLQELSRKEKELEASRANVEEKFKALNEEKSNLDLTLVSLLKREEAVIEREASLQKKEQKLLVSQETLASKESNE  334 (1075)
Q Consensus       255 e~~~e~~~~l~~kEkeLEe~kkkie~~~~~Lk~ke~dl~~rl~~l~~rEee~~~~~~~Le~KEkELl~leEKL~aRE~~E  334 (1075)
                      ..+++.......++.++.++...++..           ...+..|+-          ....-+..|..+...|..-    
T Consensus       201 r~~~el~~~k~kL~~E~~eL~~qLee~-----------e~~~~~l~r----------~k~~L~~qLeelk~~leeE----  255 (859)
T PF01576_consen  201 RQRNELTEQKAKLQSENSELTRQLEEA-----------ESQLSQLQR----------EKSSLESQLEELKRQLEEE----  255 (859)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHH----------HHHHHHHHHHhhHHHHHhH----
Confidence            666665555555555555555544333           222222211          0011122233333222211    


Q ss_pred             HHHHHHHhHHHHhhhhhhHHHHHHHHhhhHHHHHHHHHHH---HHhhhhhhhhhHHHHHhhhhhHHHhHHHHHHhhhhHH
Q 001447          335 IQKIIANHESALRVKQSEFEAELAIKYKLAEDEIEKKRRA---WELRDLDLGQREESLLEREHDLEVQSRALVDKEKDLV  411 (1075)
Q Consensus       335 IQKLldeh~a~L~~Kk~eFElElE~krKs~eeEle~K~~~---~E~rEvel~h~Eekl~kREqaLe~k~~~lkEKEkdl~  411 (1075)
                      +     -.+..|..+.+..+.+++..+..++++-++|...   +..-..+|..+-.+   -+.....+.+.|.+--+.|.
T Consensus       256 t-----r~k~~L~~~l~~le~e~~~L~eqleeE~e~k~~l~~qlsk~~~El~~~k~K---~e~e~~~~~EelEeaKKkL~  327 (859)
T PF01576_consen  256 T-----RAKQALEKQLRQLEHELEQLREQLEEEEEAKSELERQLSKLNAELEQWKKK---YEEEAEQRTEELEEAKKKLE  327 (859)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             h-----hhhhhhHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHHHH---HHHHhhhhHHHHHHHHHHHH
Confidence            0     1345667778888888888888888887776542   22333333333222   23344444556666667777


Q ss_pred             HHhhhhHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhh---hhHHHHHHHHHHHhhhhhhhhhhhhHHHHHH
Q 001447          412 ERSHLLEEKENKLIAFEKEADLKKSLLQKEKEEVNIIKSDLQKSLS---SLDEKKKQVNCAKDKLEAMKSEAGELSVLEI  488 (1075)
Q Consensus       412 ~Ksk~LKEkEksL~aeEK~le~ek~~L~~ekEel~~lK~dlEK~~a---~~e~q~~qi~ee~E~LkiteeER~E~~~LQ~  488 (1075)
                      .++..+.+.-..+.+.--.|+.-+..|+.+-+.+..   +|++..+   .++...++++.....++.-          -.
T Consensus       328 ~~L~el~e~le~~~~~~~~LeK~k~rL~~EleDl~~---eLe~~~~~~~~LeKKqr~fDk~l~e~k~~----------~~  394 (859)
T PF01576_consen  328 RKLQELQEQLEEANAKVSSLEKTKKRLQGELEDLTS---ELEKAQAAAAELEKKQRKFDKQLAEWKAK----------VE  394 (859)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhHHHHHHHHHHH----------HH
Confidence            777777777777777777787778888877666554   5555444   5566666666544433322          13


Q ss_pred             HHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHH
Q 001447          489 KLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVERVVVSKSLKDERDSLRQERDAMRDQH  568 (1075)
Q Consensus       489 eLKeEId~~R~Qke~LlkEae~Lk~eKekFE~EWE~LDEKR~el~KEa~~I~eEre~lek~~~~E~erLK~Ek~~~r~~~  568 (1075)
                      .+..+.|..-.....+..++-.|+.+.......|+.+.-....|+.|+.++..+.-...+-++ +-++.+.....-.+.+
T Consensus       395 ~~~~e~d~~q~e~r~~~te~~~Lk~~lee~~e~~e~lere~k~L~~El~dl~~q~~~~~k~v~-eLek~kr~LE~e~~El  473 (859)
T PF01576_consen  395 ELQAERDAAQREARELETELFKLKNELEELQEQLEELERENKQLQDELEDLTSQLDDAGKSVH-ELEKAKRRLEQEKEEL  473 (859)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhccchhhhhhhccchH-HHHHHHHHHHHHHHHH
Confidence            556677777777777788888888887777777777777777777777777655443333332 2222222111111111


Q ss_pred             HhhhhhhhhhHHHHHHhhhhhhhhHHHHHHHHHHHhhhhhHhhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhh
Q 001447          569 KRDVDSLNREREEFMNKMVHEHSEWFTKIQQERADFLLGIEMQKRDLENCIEKRREELESSFREREKAFEEEKMREFQQI  648 (1075)
Q Consensus       569 krelE~L~~ekEsF~~~MehErs~~~eKiq~Erad~l~d~EmqkreLE~~iq~RqEEiE~~L~EREk~FEeek~~EL~~I  648 (1075)
                      +..++-+.                          +-+...|..+.-|+..|+.-+-++++.|.+|+..|+..+..=...|
T Consensus       474 ~~~leE~E--------------------------~~l~~~E~~~lRl~~el~~~r~e~er~l~eKeeE~E~~Rr~~qr~l  527 (859)
T PF01576_consen  474 QEQLEEAE--------------------------DALEAEEQKKLRLQVELQQLRQEIERELQEKEEEFEETRRNHQRQL  527 (859)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHH--------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhHHHH
Confidence            11222111                          2223455566778888888899999999999999998776544444


Q ss_pred             hhHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhhhhhHHHHHHHhhHHH
Q 001447          649 SSLKEKAEKELEQVTLEIKRLDLERMEINMDRQRRDREWAELNNSIEE  696 (1075)
Q Consensus       649 N~lkE~a~kE~Eev~lE~~rLekER~Ei~~~ke~le~e~aEm~kdIee  696 (1075)
                      -+|..-+..|.           +.|.++.-.|++++.+..+|.-.++.
T Consensus       528 ~~le~~LE~E~-----------k~r~~~~r~kkKLE~~l~eLe~~ld~  564 (859)
T PF01576_consen  528 ESLEAELEEER-----------KERAEALREKKKLESDLNELEIQLDH  564 (859)
T ss_dssp             ------------------------------------------------
T ss_pred             HHHHhHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44433332222           23444444455555544444433333

Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.

>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT)

Probab=97.05  E-value=1.3  Score=53.43  Aligned_cols=96  Identities=18%  Similarity=0.188  Sum_probs=62.3

Q ss_pred             HHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHH
Q 001447          488 IKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVERVVVSKSLKDERDSLRQERDAMRDQ  567 (1075)
Q Consensus       488 ~eLKeEId~~R~Qke~LlkEae~Lk~eKekFE~EWE~LDEKR~el~KEa~~I~eEre~lek~~~~E~erLK~Ek~~~r~~  567 (1075)
                      +.+-+|...+.+..+..-.++.+|+.++.+-+.   .|+|+|.+=++=...|+.++..= +++-+|..|.-.|..++=.-
T Consensus       353 ~q~~qEk~~l~~~~e~~k~~ie~L~~el~~~e~---~lqEer~E~qkL~~ql~ke~D~n-~vqlsE~~rel~Elks~lrv  428 (546)
T PF07888_consen  353 SQWAQEKQALQHSAEADKDEIEKLSRELQMLEE---HLQEERMERQKLEKQLGKEKDCN-RVQLSENRRELQELKSSLRV  428 (546)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhhhhh-HHHHHHHHHHHHHHHHHHHH
Confidence            455555555554444444567788888887776   68899988777777776655443 56778888887776665555


Q ss_pred             HHhhhhhhhhhHHHHHHhhh
Q 001447          568 HKRDVDSLNREREEFMNKMV  587 (1075)
Q Consensus       568 ~krelE~L~~ekEsF~~~Me  587 (1075)
                      .+.+-|.|..++-..|.-|.
T Consensus       429 ~qkEKEql~~EkQeL~~yi~  448 (546)
T PF07888_consen  429 AQKEKEQLQEEKQELLEYIE  448 (546)
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            55555555555555444443

This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].

>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]

Probab=96.93  E-value=2.1  Score=54.71  Aligned_cols=106  Identities=25%  Similarity=0.250  Sum_probs=56.2

Q ss_pred             HHHHHHHHHHHHhhhhhHHHHHHHHHHHhhh-hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHH
Q 001447          443 EEVNIIKSDLQKSLSSLDEKKKQVNCAKDKL-EAMKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAE  521 (1075)
Q Consensus       443 Eel~~lK~dlEK~~a~~e~q~~qi~ee~E~L-kiteeER~E~~~LQ~eLKeEId~~R~Qke~LlkEae~Lk~eKekFE~E  521 (1075)
                      +++...-..+.+.+.....-.++|....+.+ .-+..++.+..---..|++||+++..|...|-.|.++++..-..=+.|
T Consensus       358 ~~~~~~~n~i~~~k~~~d~l~k~I~~~~~~~~~~~~~~~~e~e~k~~~L~~evek~e~~~~~L~~e~~~~~~~~~~~~ee  437 (1074)
T KOG0250|consen  358 EEIREIENSIRKLKKEVDRLEKQIADLEKQTNNELGSELEERENKLEQLKKEVEKLEEQINSLREELNEVKEKAKEEEEE  437 (1074)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence            3333333444444444444444444444444 444555555444445566666666666666666666666655555555


Q ss_pred             HhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 001447          522 WEMIDEKREELRKEAERVAVERVVVSK  548 (1075)
Q Consensus       522 WE~LDEKR~el~KEa~~I~eEre~lek  548 (1075)
                      -+.+..+...|.+-...+..+=..+.+
T Consensus       438 ~~~i~~~i~~l~k~i~~~~~~l~~lk~  464 (1074)
T KOG0250|consen  438 KEHIEGEILQLRKKIENISEELKDLKK  464 (1074)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            555655555666655555544443333

>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=96.82  E-value=0.95  Score=48.40  Aligned_cols=178  Identities=19%  Similarity=0.230  Sum_probs=85.8

Q ss_pred             hchHHHHHHHHHHHHHHHHHhhhhhhhhHhhHhhHHHHhHhHHHHHHHhhcHHHHHHHHhhhhhhhhHhHHHhhhhHHHH
Q 001447          227 QSLSDRKKILQQEHERLLDAQTLLNEREDHILSKLQELSRKEKELEASRANVEEKFKALNEEKSNLDLTLVSLLKREEAV  306 (1075)
Q Consensus       227 e~L~eweKkLqe~eerL~e~q~~LNqREe~~~e~~~~l~~kEkeLEe~kkkie~~~~~Lk~ke~dl~~rl~~l~~rEee~  306 (1075)
                      +.|..-..+|.+.+.++-+..+.+..=|.+....+..+..++..|.+++...+..-..+.+-...|...-..|.--|.-+
T Consensus        57 erL~~~~~kL~~~e~~~de~er~~k~lE~r~~~~eeri~~lE~~l~ea~~~~ee~e~k~~E~~rkl~~~E~~Le~aEeR~  136 (237)
T PF00261_consen   57 ERLEEATEKLEEAEKRADESERARKVLENREQSDEERIEELEQQLKEAKRRAEEAERKYEEVERKLKVLEQELERAEERA  136 (237)
T ss_dssp             CCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444455555555555555555555555555555556666666665555555554444444444444444444444444


Q ss_pred             HHHHHHHHHhHHhHHHHHHHHhhhhhHHHHHHHHHhHHHHhhhhhhHHHHHHHHhhhHHHHHHHHHHHHHhhhhhhhhhH
Q 001447          307 IEREASLQKKEQKLLVSQETLASKESNEIQKIIANHESALRVKQSEFEAELAIKYKLAEDEIEKKRRAWELRDLDLGQRE  386 (1075)
Q Consensus       307 ~~~~~~Le~KEkELl~leEKL~aRE~~EIQKLldeh~a~L~~Kk~eFElElE~krKs~eeEle~K~~~~E~rEvel~h~E  386 (1075)
                      +..++.+..-|.+|..+-..|-+=|-.+-+             -.+=+-.++.+-+.|..-|..=..-++--|..+...|
T Consensus       137 e~~E~ki~eLE~el~~~~~~lk~lE~~~~~-------------~~~re~~~e~~i~~L~~~lkeaE~Rae~aE~~v~~Le  203 (237)
T PF00261_consen  137 EAAESKIKELEEELKSVGNNLKSLEASEEK-------------ASEREDEYEEKIRDLEEKLKEAENRAEFAERRVKKLE  203 (237)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhchhHHHHHHHHHHHHHHHHHhhhhhhh-------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444444444444444444444332221110             0111122222223333333333334444455556666


Q ss_pred             HHHHhhhhhHHHhHHHHHHhhhhHHHHhhhh
Q 001447          387 ESLLEREHDLEVQSRALVDKEKDLVERSHLL  417 (1075)
Q Consensus       387 ekl~kREqaLe~k~~~lkEKEkdl~~Ksk~L  417 (1075)
                      ..+..-+-.|..--.+.+....+|+.-+..|
T Consensus       204 ~~id~le~eL~~~k~~~~~~~~eld~~l~el  234 (237)
T PF00261_consen  204 KEIDRLEDELEKEKEKYKKVQEELDQTLNEL  234 (237)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            6666666666666666666666666555443

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....

>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=96.74  E-value=0.68  Score=49.46  Aligned_cols=60  Identities=20%  Similarity=0.231  Sum_probs=30.6

Q ss_pred             HHHHHHHHHHHHHhhhhhhhhHhhHhhHHHHhHhHHHHHHHhhcHHHHHHHHhhhhhhhh
Q 001447          234 KILQQEHERLLDAQTLLNEREDHILSKLQELSRKEKELEASRANVEEKFKALNEEKSNLD  293 (1075)
Q Consensus       234 KkLqe~eerL~e~q~~LNqREe~~~e~~~~l~~kEkeLEe~kkkie~~~~~Lk~ke~dl~  293 (1075)
                      -++.+.+.+|-+....+..-+.+.-+..+.|...+.+|+.+...++..-..+.+-+..|.
T Consensus        92 eri~~lE~~l~ea~~~~ee~e~k~~E~~rkl~~~E~~Le~aEeR~e~~E~ki~eLE~el~  151 (237)
T PF00261_consen   92 ERIEELEQQLKEAKRRAEEAERKYEEVERKLKVLEQELERAEERAEAAESKIKELEEELK  151 (237)
T ss_dssp             HHHHHCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHH
Confidence            344444445555555555555555555555555555555555555544444444444333

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....

>PRK12704 phosphodiesterase; Provisional

Probab=96.34  E-value=0.16  Score=60.26  Aligned_cols=77  Identities=25%  Similarity=0.325  Sum_probs=47.4

Q ss_pred             hhhHHHHHHHHhhhHHHHHHHHHHHHHhhhhhhhhhHHHHHhhhhhHHHhHHHHHHhhhhHHHHhhhhHHHHhhhHHHHH
Q 001447          350 QSEFEAELAIKYKLAEDEIEKKRRAWELRDLDLGQREESLLEREHDLEVQSRALVDKEKDLVERSHLLEEKENKLIAFEK  429 (1075)
Q Consensus       350 k~eFElElE~krKs~eeEle~K~~~~E~rEvel~h~Eekl~kREqaLe~k~~~lkEKEkdl~~Ksk~LKEkEksL~aeEK  429 (1075)
                      +.+++.|+...|..++.++..+       +.++..+|..+.+|+..|+.+.+.|..++++|..+-+.|..+++.|...++
T Consensus        59 ~leaeeE~~~~R~Ele~e~~~~-------e~~L~qrE~rL~~Ree~Le~r~e~Lekke~eL~~re~~Le~re~eLe~~~~  131 (520)
T PRK12704         59 LLEAKEEIHKLRNEFEKELRER-------RNELQKLEKRLLQKEENLDRKLELLEKREEELEKKEKELEQKQQELEKKEE  131 (520)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344455555555555555443       444556666677777777777777777777777776666666666665555


Q ss_pred             HhHH
Q 001447          430 EADL  433 (1075)
Q Consensus       430 ~le~  433 (1075)
                      +++.
T Consensus       132 ~~~~  135 (520)
T PRK12704        132 ELEE  135 (520)
T ss_pred             HHHH
Confidence            5543

>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []

Probab=96.32  E-value=4.8  Score=50.51  Aligned_cols=243  Identities=22%  Similarity=0.212  Sum_probs=112.6

Q ss_pred             HHHHHHHHHHHHHhhhhhccchhheehhhhhhhHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHhhHhhhhhhhhHHHHH
Q 001447           48 ALIAYIAKLETEIFEHQHHMGLLILEKKELASKYEQIKASAEAAELLQKHDRASHLSAIAEARKREESLKKTLGVEKECI  127 (1075)
Q Consensus        48 aLia~IskLE~ElydYQynMGLLLiEkKEwtSK~eelkqa~~eae~~lKREqaAhl~ALsEaeKREEnLkKALgvEKqCV  127 (1075)
                      .+..-|..|..|| --|..|+-|.-+...-.+-|+.+.. ++-++.-+-|=++-|=-+..|                  +
T Consensus        71 ~~~~ei~~LqeEL-r~q~e~~rL~~~~e~~~~e~e~l~~-ld~~~~q~~rl~~E~er~~~E------------------l  130 (775)
T PF10174_consen   71 KAQEEIQALQEEL-RAQRELNRLQQELEKAQYEFESLQE-LDKAQEQFERLQAERERLQRE------------------L  130 (775)
T ss_pred             HHHHHHHHHHHHH-HHhhHHHHHHHHhhhcccccchhhh-hhhHHHHHHHHHHHHHHHHHH------------------H
Confidence            4455566666666 6666666665554444555555555 444433222211111111111                  1


Q ss_pred             HhHHHHHHHHHhhhhhhhhhhhhhhhHHHHHHHHHhhhhHHHHHhhhhhhHHHHHHhcchhHHhhhhHHHhhhhhHHHHH
Q 001447          128 ASLEKAVHEIRAESAETKVAADSKFAEARCMVENAQKKFAEAEAKLHAAESLQAEANRYHRSAERKLQEVVAREDDLSRR  207 (1075)
Q Consensus       128 adLEKAL~emr~E~AeiK~tsesKLaEA~aLv~~~eeKslEvE~KL~aAea~~AEa~Rk~s~aeRkL~eVEaRE~~LrRe  207 (1075)
                      ..|-+.|-+|+..+.-.+.+-+..-.+...|..-++.|-..++            +..-.+.+.+.+.+.+++-..|+--
T Consensus       131 ~~lr~~lE~~q~~~e~~q~~l~~~~eei~kL~e~L~~~g~~~~------------~~~~~~~~~~~~~~~e~~~~~le~l  198 (775)
T PF10174_consen  131 ERLRKTLEELQLRIETQQQTLDKADEEIEKLQEMLQSKGLSAE------------AEEEDNEALRRIREAEARIMRLESL  198 (775)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccc------------chhhhhHHHHHHHHHHHHHHHHHHH
Confidence            2244677778888888888888877777777777655544431            1111122333333333333222211


Q ss_pred             HhHhhhhhhhHHHHHHHHHhchHHHHHHHHHHHH-HHH-HHhhhhhhhhHhhHhhHHHHhHhHHHHHHHhhcHHHHHHHH
Q 001447          208 IASFKADCEEKEREIIRERQSLSDRKKILQQEHE-RLL-DAQTLLNEREDHILSKLQELSRKEKELEASRANVEEKFKAL  285 (1075)
Q Consensus       208 rlSf~~E~ea~E~~~~~qRe~L~eweKkLqe~ee-rL~-e~q~~LNqREe~~~e~~~~l~~kEkeLEe~kkkie~~~~~L  285 (1075)
                             .+.++.....-|+   .....++-..+ ... -.|..|...+..|.+..+.+..++-++..++..++....--
T Consensus       199 -------le~~e~~~~~~r~---~l~~~~~~~~~~a~t~alq~~ie~Kd~ki~~lEr~l~~le~Ei~~L~~~~~~~~~~r  268 (775)
T PF10174_consen  199 -------LERKEKEHMEARE---QLHRRLQMERDDAETEALQTVIEEKDTKIASLERMLRDLEDEIYRLRSRGELSEADR  268 (775)
T ss_pred             -------HHHHHHHhhhhhH---HHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccch
Confidence                   1111111111111   00000100000 000 23555666666666666666666666665555444332211


Q ss_pred             hhhhhhhhH-hHHHhhhhHHHHHHHHHHHHHhHHhHHHHHHHHhhhhhH
Q 001447          286 NEEKSNLDL-TLVSLLKREEAVIEREASLQKKEQKLLVSQETLASKESN  333 (1075)
Q Consensus       286 k~ke~dl~~-rl~~l~~rEee~~~~~~~Le~KEkELl~leEKL~aRE~~  333 (1075)
                      ......+.. +...+..+-+ ++..+..|..|..||..++-+|......
T Consensus       269 ~~~~k~le~~~s~~~~mK~k-~d~~~~eL~rk~~E~~~~qt~l~~~~~~  316 (775)
T PF10174_consen  269 DRLDKQLEVYKSHSLAMKSK-MDRLKLELSRKKSELEALQTRLETLEEQ  316 (775)
T ss_pred             HHHHHHHHHHHhhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            111011111 1111111111 6777777888888888888888766643

Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].

>PRK11637 AmiB activator; Provisional

Probab=96.32  E-value=1.6  Score=50.05  Aligned_cols=44  Identities=7%  Similarity=0.070  Sum_probs=20.0

Q ss_pred             hhhHHHHHHHHHHHHHhHHhHHHHHHHHhhhhhHHHHHHHHHhH
Q 001447          300 LKREEAVIEREASLQKKEQKLLVSQETLASKESNEIQKIIANHE  343 (1075)
Q Consensus       300 ~~rEee~~~~~~~Le~KEkELl~leEKL~aRE~~EIQKLldeh~  343 (1075)
                      ...+.++......+...+.+|..++.+|..+...-=+.+-+-+.
T Consensus        92 ~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~l~~rlra~Y~  135 (428)
T PRK11637         92 RETQNTLNQLNKQIDELNASIAKLEQQQAAQERLLAAQLDAAFR  135 (428)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33344444444445555555555555555444433333333333

>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope

Probab=96.26  E-value=2.3  Score=46.26  Aligned_cols=232  Identities=21%  Similarity=0.340  Sum_probs=119.5

Q ss_pred             HHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH---hhhhhhhhhHHHHHHHH
Q 001447          489 KLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVERVVVSK---SLKDERDSLRQERDAMR  565 (1075)
Q Consensus       489 eLKeEId~~R~Qke~LlkEae~Lk~eKekFE~EWE~LDEKR~el~KEa~~I~eEre~lek---~~~~E~erLK~Ek~~~r  565 (1075)
                      .|...|+.+-.++--|..+.+.|+.+...|...|+..-..+..++.+...+...-.....   .+.+.-..|+.+..-++
T Consensus        58 ~lr~~id~~~~eka~l~~e~~~l~~e~~~~r~k~e~e~~~~~~le~el~~lrk~ld~~~~~r~~le~~i~~L~eEl~fl~  137 (312)
T PF00038_consen   58 ELRRQIDDLSKEKARLELEIDNLKEELEDLRRKYEEELAERKDLEEELESLRKDLDEETLARVDLENQIQSLKEELEFLK  137 (312)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HhHHhhhhHHHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHhHHHHHHHHHHHHHHHHH
Confidence            445677777777777777788888888888888887777777776666555433332222   23456677888888888


Q ss_pred             HHHHhhhhhhhhhHH-HHHHhhhhh-hhhHHHHHHHHHHHhhhhhHhhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 001447          566 DQHKRDVDSLNRERE-EFMNKMVHE-HSEWFTKIQQERADFLLGIEMQKRDLENCIEKRREELESSFREREKAFEEEKMR  643 (1075)
Q Consensus       566 ~~~krelE~L~~ekE-sF~~~MehE-rs~~~eKiq~Erad~l~d~EmqkreLE~~iq~RqEEiE~~L~EREk~FEeek~~  643 (1075)
                      ..|..++..|...-. .+-..|..- ...+..-+..=|           ...+..+.+-+.++|..++-+-......-..
T Consensus       138 ~~heeEi~~L~~~~~~~~~~e~~~~~~~dL~~~L~eiR-----------~~ye~~~~~~~~e~e~~y~~k~~~l~~~~~~  206 (312)
T PF00038_consen  138 QNHEEEIEELREQIQSSVTVEVDQFRSSDLSAALREIR-----------AQYEEIAQKNREELEEWYQSKLEELRQQSEK  206 (312)
T ss_dssp             HHHHHHHHTTSTT----------------HHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhhhhhhhhhccccccceeecccccccchhhhhhHH-----------HHHHHHHhhhhhhhhhhcccccccccccccc
Confidence            888888888876553 222222210 122222233333           3444445555555555555544443333333


Q ss_pred             HhhhhhhHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhhhhhHHHHHHHhhHHH-HHHHHHHHHHHHHHHHHhHHHHHHHH
Q 001447          644 EFQQISSLKEKAEKELEQVTLEIKRLDLERMEINMDRQRRDREWAELNNSIEE-LMVQRQKLEEQRQLLHADREEIQAES  722 (1075)
Q Consensus       644 EL~~IN~lkE~a~kE~Eev~lE~~rLekER~Ei~~~ke~le~e~aEm~kdIee-L~~ls~KLk~QRE~~~~ERe~fl~~v  722 (1075)
                      --..+.+    +..|+-.++..+..|..+-.-+......|+.+..++....+. +......+......+..=|..+-.++
T Consensus       207 ~~~~~~~----~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~le~~~~~~~~~~~~~i~~le~el~~l~~~~~~~~  282 (312)
T PF00038_consen  207 SSEELES----AKEELKELRRQIQSLQAELESLRAKNASLERQLRELEQRLDEEREEYQAEIAELEEELAELREEMARQL  282 (312)
T ss_dssp             HHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccccch----hHhHHHHHHhhhhHhhhhhhccccchhhhhhhHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHH
Confidence            2222222    233444444444444444444444455555555554433332 22233334444444444455555555


Q ss_pred             HHhhhhhhhHhHH
Q 001447          723 ERLKKLEDLKIAV  735 (1075)
Q Consensus       723 EklK~ckncg~~~  735 (1075)
                      ..+..+-|-+...
T Consensus       283 ~ey~~Ll~~K~~L  295 (312)
T PF00038_consen  283 REYQELLDVKLAL  295 (312)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhH
Confidence            5555555555444

They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....

>PRK11637 AmiB activator; Provisional

Probab=96.19  E-value=3.4  Score=47.54  Aligned_cols=26  Identities=15%  Similarity=0.394  Sum_probs=15.3

Q ss_pred             hhHHHHHHHHHHHhhhhhHhhhhhhH
Q 001447          591 SEWFTKIQQERADFLLGIEMQKRDLE  616 (1075)
Q Consensus       591 s~~~eKiq~Erad~l~d~EmqkreLE  616 (1075)
                      ..++..+.+-+.+++..|.-.+..|+
T Consensus       158 ~~~l~~i~~~d~~~l~~l~~~~~~L~  183 (428)
T PRK11637        158 LAYFGYLNQARQETIAELKQTREELA  183 (428)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34445555666666666666666555

>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]

Probab=96.17  E-value=8.6  Score=51.97  Aligned_cols=453  Identities=20%  Similarity=0.195  Sum_probs=213.9

Q ss_pred             HHHHHHHHHHHHHHhhhhhccchhheehhhhh----------------hhHHHHHHHHHHHHHHHhhhhhhhhhHHHHHH
Q 001447           47 AALIAYIAKLETEIFEHQHHMGLLILEKKELA----------------SKYEQIKASAEAAELLQKHDRASHLSAIAEAR  110 (1075)
Q Consensus        47 ~aLia~IskLE~ElydYQynMGLLLiEkKEwt----------------SK~eelkqa~~eae~~lKREqaAhl~ALsEae  110 (1075)
                      ..+-++|+.|++++-+---+.--|+=|+..|.                |..++..+... .+..+..-+...=+...|..
T Consensus       575 ~~a~e~i~~L~~~l~e~~~~i~sLl~erd~y~e~l~~~e~~~~~k~nss~~~~t~~~~~-~e~~l~qLe~~le~~~~E~~  653 (1822)
T KOG4674|consen  575 NEASEKIAELEKELEEQEQRIESLLTERDMYKELLAELEDSHQLKPNSSALDQTEAPRA-KEKRLRQLENELESYKKEKR  653 (1822)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCCCCchhhcccccchh-HHHHHHHHHHHHHHHHHHHH
Confidence            35668889999988776666677777777662                11111111111 11111112222222233333


Q ss_pred             HhhHhhhhhhhhHHHHHHhHHHHHHHHHhhhhhhhh---hhhhhhhHHHHHHH-------HHhhhhHHHHHhhhhhhHHH
Q 001447          111 KREESLKKTLGVEKECIASLEKAVHEIRAESAETKV---AADSKFAEARCMVE-------NAQKKFAEAEAKLHAAESLQ  180 (1075)
Q Consensus       111 KREEnLkKALgvEKqCVadLEKAL~emr~E~AeiK~---tsesKLaEA~aLv~-------~~eeKslEvE~KL~aAea~~  180 (1075)
                      ++...|.+.       +.+|.+-..+||...-..+.   .|--|+.-++--|+       .+.+....+..=++..+...
T Consensus       654 ~~~~~l~e~-------~~~l~~ev~~ir~~l~k~~~~~~fA~ekle~L~~~ie~~K~e~~tL~er~~~l~~~i~~~~q~~  726 (1822)
T KOG4674|consen  654 ENLKKLQED-------FDSLQKEVTAIRSQLEKLKNELNLAKEKLENLEKNLELTKEEVETLEERNKNLQSTISKQEQTV  726 (1822)
T ss_pred             HHHHHHHHH-------HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333222       23444444455544433332   12223333333333       33344444555667777777


Q ss_pred             HHHhcchhHHhhhhHHHhhhhhHHHHHHhHhh-------hhhhhHHHHHHHHHhchHHHHHHHHHHHHHHHHHhhhhhhh
Q 001447          181 AEANRYHRSAERKLQEVVAREDDLSRRIASFK-------ADCEEKEREIIRERQSLSDRKKILQQEHERLLDAQTLLNER  253 (1075)
Q Consensus       181 AEa~Rk~s~aeRkL~eVEaRE~~LrRerlSf~-------~E~ea~E~~~~~qRe~L~eweKkLqe~eerL~e~q~~LNqR  253 (1075)
                      ..++--...+..++.-+++.=+.|+.+-..|.       .|.+++....+.++..|...+-.....++....++.-+++ 
T Consensus       727 ~~~s~eL~~a~~k~~~le~ev~~LKqE~~ll~~t~~rL~~e~~~l~~e~~~L~~~l~~lQt~~~~~e~s~~~~k~~~e~-  805 (1822)
T KOG4674|consen  727 HTLSQELLSANEKLEKLEAELSNLKQEKLLLKETEERLSQELEKLSAEQESLQLLLDNLQTQKNELEESEMATKDKCES-  805 (1822)
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence            88888888888999999999888888876665       3455555555555555555555444444444444444442 


Q ss_pred             hHhhHhhHHHHhHhHHHHHHHhhcHHHHHHHHhhhhhhhhHhHH----HhhhhHHHHHHHH-------HHHHHhHHhHHH
Q 001447          254 EDHILSKLQELSRKEKELEASRANVEEKFKALNEEKSNLDLTLV----SLLKREEAVIERE-------ASLQKKEQKLLV  322 (1075)
Q Consensus       254 Ee~~~e~~~~l~~kEkeLEe~kkkie~~~~~Lk~ke~dl~~rl~----~l~~rEee~~~~~-------~~Le~KEkELl~  322 (1075)
                               .+..++.+|..++++++....-++.-..+++.-+.    .+..-....+.+.       ..+.+.|..+..
T Consensus       806 ---------~i~eL~~el~~lk~klq~~~~~~r~l~~~~~~~l~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~le~k~~e  876 (1822)
T KOG4674|consen  806 ---------RIKELERELQKLKKKLQEKSSDLRELTNSLEKQLENAQNLVDELESELKSLLTSLDSVSTNIAKLEIKLSE  876 (1822)
T ss_pred             ---------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                     23445555555665555555544444333333222    2222223333333       333344444444


Q ss_pred             HHHHHhhhhhHHHHHHHHHh---HHHHhhhhhhHHHHHHHH---hhhHHHHHH---HHHHHHHhhhhhhhhhHHHHHhhh
Q 001447          323 SQETLASKESNEIQKIIANH---ESALRVKQSEFEAELAIK---YKLAEDEIE---KKRRAWELRDLDLGQREESLLERE  393 (1075)
Q Consensus       323 leEKL~aRE~~EIQKLldeh---~a~L~~Kk~eFElElE~k---rKs~eeEle---~K~~~~E~rEvel~h~Eekl~kRE  393 (1075)
                      |..+|.   .+.++.+..+.   .....-+-..|..++++-   +..|-....   +=-.....-|.-|..+...+.+--
T Consensus       877 L~k~l~---~~~~~~~~l~~~~~~~d~~~~~~~Lr~~~eq~~~l~~~L~~a~s~i~~yqe~~~s~eqsl~~~ks~lde~~  953 (1822)
T KOG4674|consen  877 LEKRLK---SAKTQLLNLDSKSSNEDATILEDTLRKELEEITDLKEELTDALSQIREYQEEYSSLEQSLESVKSELDETR  953 (1822)
T ss_pred             HHHHHH---HhHHHHhhccccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444442   35666666665   233333334466665554   333322221   111222233333334444444434


Q ss_pred             hhHHHhHHHHHHhhhhHHHHhhhhHHHHhhhH--------HHHHH---hHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHH
Q 001447          394 HDLEVQSRALVDKEKDLVERSHLLEEKENKLI--------AFEKE---ADLKKSLLQKEKEEVNIIKSDLQKSLSSLDEK  462 (1075)
Q Consensus       394 qaLe~k~~~lkEKEkdl~~Ksk~LKEkEksL~--------aeEK~---le~ek~~L~~ekEel~~lK~dlEK~~a~~e~q  462 (1075)
                      +.++.+.+.+..+--.|+.++..|+..=..|.        -.+++   +..+..-++.+...+.....+..+....+.+.
T Consensus       954 ~~~ea~ie~~~~k~tslE~~ls~L~~~~~~l~~e~~~~~k~~e~~~~~~~~e~~sl~ne~~~~~~~~s~~~~~~~~~k~d 1033 (1822)
T KOG4674|consen  954 LELEAKIESLHKKITSLEEELSELEKEIENLREELELSTKGKEDKLLDLSREISSLQNELKSLLKAASQANEQIEDLQND 1033 (1822)
T ss_pred             HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44444444444444444444333332211111        11221   12223334444444444444433333333333


Q ss_pred             HHHHHHHHhhhhhhhhhh----hhHH---HHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHh
Q 001447          463 KKQVNCAKDKLEAMKSEA----GELS---VLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWE  523 (1075)
Q Consensus       463 ~~qi~ee~E~LkiteeER----~E~~---~LQ~eLKeEId~~R~Qke~LlkEae~Lk~eKekFE~EWE  523 (1075)
                      +..   ..+.+....+.-    ..|.   ..=.+|+++..+|-.+-..|-+.++-+...-..|++-|.
T Consensus      1034 l~~---~~~~~~~a~~~Ye~el~~ha~~~q~l~kl~ee~~~~~~e~~~Lk~~~~~~~~~l~e~~~~w~ 1098 (1822)
T KOG4674|consen 1034 LKT---ETEQLRKAQSKYESELVQHADLTQKLIKLREEFAKCNDELLKLKKSRESRHALLSEQERDWS 1098 (1822)
T ss_pred             HHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhHHhhcccchH
Confidence            222   222222222211    1111   122456777777777777888888888788888888885

>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]

Probab=96.03  E-value=7.2  Score=49.87  Aligned_cols=300  Identities=23%  Similarity=0.296  Sum_probs=176.8

Q ss_pred             HHHHhHhhhhhhhHHHHHHHHHhchHHHHHHHHHHHHHHHHHhhhhhhhhHhhHhhHHHHhHhHHHHHHHhhcHH---HH
Q 001447          205 SRRIASFKADCEEKEREIIRERQSLSDRKKILQQEHERLLDAQTLLNEREDHILSKLQELSRKEKELEASRANVE---EK  281 (1075)
Q Consensus       205 rRerlSf~~E~ea~E~~~~~qRe~L~eweKkLqe~eerL~e~q~~LNqREe~~~e~~~~l~~kEkeLEe~kkkie---~~  281 (1075)
                      |++.++.--|-+-+...|..-=+.+.++=+.|.+..+.|..-|.+=++|      +.-+++.-.++|-++...++   ..
T Consensus       172 reeSlkim~ET~qK~ekI~ell~yieerLreLEeEKeeL~~Yqkldk~r------r~lEYtiYdrEl~E~~~~l~~le~~  245 (1200)
T KOG0964|consen  172 REESLKIMEETKQKREKINELLKYIEERLRELEEEKEELEKYQKLDKER------RSLEYTIYDRELNEINGELERLEED  245 (1200)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhH------hhhhhhhhhhHHHHHHHHHHHHHHH
Confidence            3455666677777788888877888888888888888888877765555      33445566666666665543   33


Q ss_pred             HHHHhhhhhhhhHhHHHhhhhHHHHHHHHHHHHHhHHhHHHHHH---HHhhhhhHHHHHHHHHhHHHHhhhhhhHHHHHH
Q 001447          282 FKALNEEKSNLDLTLVSLLKREEAVIEREASLQKKEQKLLVSQE---TLASKESNEIQKIIANHESALRVKQSEFEAELA  358 (1075)
Q Consensus       282 ~~~Lk~ke~dl~~rl~~l~~rEee~~~~~~~Le~KEkELl~leE---KL~aRE~~EIQKLldeh~a~L~~Kk~eFElElE  358 (1075)
                      +.+.-++-+++.   ..+..++.+.......+..-|..|..|-+   .+.+++..-+++     ++.|..+..+|--+++
T Consensus       246 r~~~~e~s~~~~---~~~~~~~d~~~~~~~~i~ele~~l~~l~~ekeq~~a~~t~~~k~-----kt~lel~~kdlq~~i~  317 (1200)
T KOG0964|consen  246 RSSAPEESEQYI---DALDKVEDESEDLKCEIKELENKLTNLREEKEQLKARETKISKK-----KTKLELKIKDLQDQIT  317 (1200)
T ss_pred             HhccchhhhhHH---HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hhhhhhhhHHHHHHhh
Confidence            334444433333   33444555666666666555555555433   445555544443     3344444444444433


Q ss_pred             HH---hhhHHHHHHHHHHHHHhhhhhhhhhH---HHHHhhhhhHHHhHHHHHHhhhhHHHH------hhhhHHHHhhhHH
Q 001447          359 IK---YKLAEDEIEKKRRAWELRDLDLGQRE---ESLLEREHDLEVQSRALVDKEKDLVER------SHLLEEKENKLIA  426 (1075)
Q Consensus       359 ~k---rKs~eeEle~K~~~~E~rEvel~h~E---ekl~kREqaLe~k~~~lkEKEkdl~~K------sk~LKEkEksL~a  426 (1075)
                      --   |++.-..++.=....+.++.++...+   ..+...|..+...+..+..+..||-+|      ++.-+++++=|+.
T Consensus       318 ~n~q~r~~~l~~l~~~~~ki~e~~~EL~~I~Pky~~l~~ee~~~~~rl~~l~~~~~~l~~Kqgr~sqFssk~eRDkwir~  397 (1200)
T KOG0964|consen  318 GNEQQRNLALHVLQKVKDKIEEKKDELSKIEPKYNSLVDEEKRLKKRLAKLEQKQRDLLAKQGRYSQFSSKEERDKWIRS  397 (1200)
T ss_pred             hhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhccccccCcHHHHHHHHHH
Confidence            21   11111111111112222222222222   123333444444455555555555443      3444667777776


Q ss_pred             HHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhHH
Q 001447          427 FEKEADLKKSLLQKEKEEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEAMKSEAGELSVLEIKLKEELDVVRAQKLELMV  506 (1075)
Q Consensus       427 eEK~le~ek~~L~~ekEel~~lK~dlEK~~a~~e~q~~qi~ee~E~LkiteeER~E~~~LQ~eLKeEId~~R~Qke~Llk  506 (1075)
                      +=..|   +.-+..-++..+.+.-|++-+...+++...+|..-...+.-++..-.++...-..||++.|..-.....|--
T Consensus       398 ei~~l---~~~i~~~ke~e~~lq~e~~~~e~~l~~~~e~i~~l~~si~e~~~r~~~~~~~~~~~k~~~del~~~Rk~lWR  474 (1200)
T KOG0964|consen  398 EIEKL---KRGINDTKEQENILQKEIEDLESELKEKLEEIKELESSINETKGRMEEFDAENTELKRELDELQDKRKELWR  474 (1200)
T ss_pred             HHHHH---HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            66666   777888888888888888888888888777777777777777777788888888888888877666666666


Q ss_pred             hhHHHHHHHHHHHHH
Q 001447          507 ETDKLQLEKAKFEAE  521 (1075)
Q Consensus       507 Eae~Lk~eKekFE~E  521 (1075)
                      |.-.|+..-++.+-+
T Consensus       475 EE~~l~~~i~~~~~d  489 (1200)
T KOG0964|consen  475 EEKKLRSLIANLEED  489 (1200)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            666676666555543

>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins

Probab=96.02  E-value=8.1  Score=50.30  Aligned_cols=86  Identities=12%  Similarity=0.187  Sum_probs=52.1

Q ss_pred             HHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHH----hhhH-HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHH
Q 001447          489 KLKEELDVVRAQKLELMVETDKLQLEKAKFEAEW----EMID-EKREELRKEAERVAVERVVVSKSLKDERDSLRQERDA  563 (1075)
Q Consensus       489 eLKeEId~~R~Qke~LlkEae~Lk~eKekFE~EW----E~LD-EKR~el~KEa~~I~eEre~lek~~~~E~erLK~Ek~~  563 (1075)
                      .+++....+..+...+..+...+++++..|..+-    -.+. +..+..+--...+..+-+.+..-+.......+.++..
T Consensus       675 ~~~~~~~~~~~~l~~l~~~l~~~~~e~~~~~~~~~~~~~e~~~e~~~~~~~~~~~~d~~i~~i~~~i~~~~~~~~~~~~~  754 (1201)
T PF12128_consen  675 AKEERKEQIEEQLNELEEELKQLKQELEELLEELKEQLKELRNELKAQWQELEAELDEQIEQIKQEIAAAKQEAKEQLKE  754 (1201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344445555556666666666666666555432    2222 4444455555566666677777777777777777888


Q ss_pred             HHHHHHhhhhh
Q 001447          564 MRDQHKRDVDS  574 (1075)
Q Consensus       564 ~r~~~krelE~  574 (1075)
                      ++.+|..+|.+
T Consensus       755 le~~~~~eL~~  765 (1201)
T PF12128_consen  755 LEQQYNQELAG  765 (1201)
T ss_pred             HHHHHHHHHHh
Confidence            88888776644

>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF

Probab=95.92  E-value=0.34  Score=57.50  Aligned_cols=75  Identities=28%  Similarity=0.319  Sum_probs=44.4

Q ss_pred             hhhHHHHHHHHhhhHHHHHHHHHHHHHhhhhhhhhhHHHHHhhhhhHHHhHHHHHHhhhhHHHHhhhhHHHHhhhHHHHH
Q 001447          350 QSEFEAELAIKYKLAEDEIEKKRRAWELRDLDLGQREESLLEREHDLEVQSRALVDKEKDLVERSHLLEEKENKLIAFEK  429 (1075)
Q Consensus       350 k~eFElElE~krKs~eeEle~K~~~~E~rEvel~h~Eekl~kREqaLe~k~~~lkEKEkdl~~Ksk~LKEkEksL~aeEK  429 (1075)
                      +.+++.|+...|..++.+++.+       +.++..+|..|.+|+..|+.+.+.|..+++.|..+.+.|..+++.+....+
T Consensus        53 ~~EaeeE~~~~R~Ele~el~~~-------e~rL~qrE~rL~qRee~Lekr~e~Lekre~~Le~ke~~L~~re~eLee~~~  125 (514)
T TIGR03319        53 LLEAKEEVHKLRAELERELKER-------RNELQRLERRLLQREETLDRKMESLDKKEENLEKKEKELSNKEKNLDEKEE  125 (514)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3345555555555555555444       444555566666666666666666666666666666666666665555555


Q ss_pred             Hh
Q 001447          430 EA  431 (1075)
Q Consensus       430 ~l  431 (1075)
                      ++
T Consensus       126 e~  127 (514)
T TIGR03319       126 EL  127 (514)
T ss_pred             HH
Confidence            44

>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association []

Probab=95.75  E-value=2.1  Score=47.82  Aligned_cols=166  Identities=20%  Similarity=0.169  Sum_probs=116.1

Q ss_pred             HHhHHHHHHhhhhHHHHhhhhHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhh
Q 001447          397 EVQSRALVDKEKDLVERSHLLEEKENKLIAFEKEADLKKSLLQKEKEEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEAM  476 (1075)
Q Consensus       397 e~k~~~lkEKEkdl~~Ksk~LKEkEksL~aeEK~le~ek~~L~~ekEel~~lK~dlEK~~a~~e~q~~qi~ee~E~Lkit  476 (1075)
                      =+...++..|..=++=+++.+..--..|...-..|......|.+..+.+..+...+....+.+..+...+......  +.
T Consensus       127 vK~~aRl~aK~~WYeWR~~ll~gl~~~L~~~~~~L~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~Lk~~~~e--~~  204 (325)
T PF08317_consen  127 VKTYARLEAKKMWYEWRMQLLEGLKEGLEENLELLQEDYAKLDKQLEQLDELLPKLRERKAELEEELENLKQLVEE--IE  204 (325)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--hh
Confidence            3444555556666666666666655555555555555555555555555555555555555555555544443333  22


Q ss_pred             hhhhhhHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 001447          477 KSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVERVVVSKSLKDERDS  556 (1075)
Q Consensus       477 eeER~E~~~LQ~eLKeEId~~R~Qke~LlkEae~Lk~eKekFE~EWE~LDEKR~el~KEa~~I~eEre~lek~~~~E~er  556 (1075)
                      .-+..++    ..||++|.....+-..+-++.++|+.++..-...++.+.+++.++..+.......++....|=.+|-.+
T Consensus       205 ~~D~~eL----~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~~~~~~~r~~t~~Ev~~  280 (325)
T PF08317_consen  205 SCDQEEL----EALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEIAEAEKIREECRGWTRSEVKR  280 (325)
T ss_pred             hcCHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHH
Confidence            2334444    346677777777788888888999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHH
Q 001447          557 LRQERDAMRDQH  568 (1075)
Q Consensus       557 LK~Ek~~~r~~~  568 (1075)
                      ||..-+.++...
T Consensus       281 Lk~~~~~Le~~~  292 (325)
T PF08317_consen  281 LKAKVDALEKLT  292 (325)
T ss_pred             HHHHHHHHHHHH
Confidence            999988887654

>PRK00106 hypothetical protein; Provisional

Probab=95.67  E-value=0.86  Score=54.64  Aligned_cols=75  Identities=27%  Similarity=0.297  Sum_probs=38.7

Q ss_pred             hhhHHHHHHHHhhhHHHHHHHHHHHHHhhhhhhhhhHHHHHhhhhhHHHhHHHHHHhhhhHHHHhhhhHHHHhhhHHHHH
Q 001447          350 QSEFEAELAIKYKLAEDEIEKKRRAWELRDLDLGQREESLLEREHDLEVQSRALVDKEKDLVERSHLLEEKENKLIAFEK  429 (1075)
Q Consensus       350 k~eFElElE~krKs~eeEle~K~~~~E~rEvel~h~Eekl~kREqaLe~k~~~lkEKEkdl~~Ksk~LKEkEksL~aeEK  429 (1075)
                      +.+++.|+...|..++.++...+..       +..+|..|.+|+..|+.+.+.|..+++.|..+.+.|..+++.+....+
T Consensus        74 ~lEaeeEi~~~R~ElEkel~eEr~r-------L~qrE~rL~qREE~LekRee~LekrE~eLe~kekeLe~reeeLee~~~  146 (535)
T PRK00106         74 LLEAKEEARKYREEIEQEFKSERQE-------LKQIESRLTERATSLDRKDENLSSKEKTLESKEQSLTDKSKHIDEREE  146 (535)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344445555555555554444333       444455555555555555555555555555555555555555544444


Q ss_pred             Hh
Q 001447          430 EA  431 (1075)
Q Consensus       430 ~l  431 (1075)
                      ++
T Consensus       147 ~~  148 (535)
T PRK00106        147 QV  148 (535)
T ss_pred             HH
Confidence            44

>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril

Probab=95.60  E-value=0.0032  Score=77.73  Aligned_cols=221  Identities=22%  Similarity=0.246  Sum_probs=0.0

Q ss_pred             cHHHHHHHHHHHHHHHhhhhh-------ccchhheehhhhhhhHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHhhHhhh
Q 001447           45 DKAALIAYIAKLETEIFEHQH-------HMGLLILEKKELASKYEQIKASAEAAELLQKHDRASHLSAIAEARKREESLK  117 (1075)
Q Consensus        45 D~~aLia~IskLE~ElydYQy-------nMGLLLiEkKEwtSK~eelkqa~~eae~~lKREqaAhl~ALsEaeKREEnLk  117 (1075)
                      .+..|.+...+|++|+-++..       ..+-|--.+.-|.+..++++..+++-    .+.+.+-...+..++.-=+.|+
T Consensus       202 ~~~el~~~k~kL~~E~~eL~~qLee~e~~~~~l~r~k~~L~~qLeelk~~leeE----tr~k~~L~~~l~~le~e~~~L~  277 (859)
T PF01576_consen  202 QRNELTEQKAKLQSENSELTRQLEEAESQLSQLQREKSSLESQLEELKRQLEEE----TRAKQALEKQLRQLEHELEQLR  277 (859)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhH----hhhhhhhHHHHHHHHHHHHHHH
Confidence            344555666677777665544       44445445556666666666555442    1222222334555555566888


Q ss_pred             hhhhhHHHHHHhHHHHHHHHHhhhhhhhhhhhhhhhHHHHHHHHHhhhhHHHHHhhhhhhHHHHHHhcchhHHhhhhHHH
Q 001447          118 KTLGVEKECIASLEKAVHEIRAESAETKVAADSKFAEARCMVENAQKKFAEAEAKLHAAESLQAEANRYHRSAERKLQEV  197 (1075)
Q Consensus       118 KALgvEKqCVadLEKAL~emr~E~AeiK~tsesKLaEA~aLv~~~eeKslEvE~KL~aAea~~AEa~Rk~s~aeRkL~eV  197 (1075)
                      ..|.-|-.+...|++.|.-+..+.+.+|--++.-...   .+..+++=---...+|..+...+-+++.+.+.+++.-+-+
T Consensus       278 eqleeE~e~k~~l~~qlsk~~~El~~~k~K~e~e~~~---~~EelEeaKKkL~~~L~el~e~le~~~~~~~~LeK~k~rL  354 (859)
T PF01576_consen  278 EQLEEEEEAKSELERQLSKLNAELEQWKKKYEEEAEQ---RTEELEEAKKKLERKLQELQEQLEEANAKVSSLEKTKKRL  354 (859)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhh---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8888888899999999999998888887666543322   2323332222234455555555556666655555555444


Q ss_pred             hhhhhHHHHHHhHhhhhhhhHHHHHHHHHhchHHHHHHHHHHHHHHHHHhhhhhhhhHhhHhhHHHHhHhHHHHH
Q 001447          198 VAREDDLSRRIASFKADCEEKEREIIRERQSLSDRKKILQQEHERLLDAQTLLNEREDHILSKLQELSRKEKELE  272 (1075)
Q Consensus       198 EaRE~~LrRerlSf~~E~ea~E~~~~~qRe~L~eweKkLqe~eerL~e~q~~LNqREe~~~e~~~~l~~kEkeLE  272 (1075)
                      .+=-.+++-+.-...+.+...++...+--..|.+|..++......+-..++-....+-.++..-..+..+.-.++
T Consensus       355 ~~EleDl~~eLe~~~~~~~~LeKKqr~fDk~l~e~k~~~~~~~~e~d~~q~e~r~~~te~~~Lk~~lee~~e~~e  429 (859)
T PF01576_consen  355 QGELEDLTSELEKAQAAAAELEKKQRKFDKQLAEWKAKVEELQAERDAAQREARELETELFKLKNELEELQEQLE  429 (859)
T ss_dssp             ---------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhHHHHHHHH
Confidence            444444444444444444455554333336678888887777666666666555555555555555544444444

Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.

>PHA02562 46 endonuclease subunit; Provisional

Probab=95.34  E-value=7.7  Score=45.28  Aligned_cols=46  Identities=15%  Similarity=0.195  Sum_probs=27.3

Q ss_pred             HHHHHHHHHHHHHHhHHHHHHhhhhhhhhhHHHHHHHhhHHHHHHH
Q 001447          655 AEKELEQVTLEIKRLDLERMEINMDRQRRDREWAELNNSIEELMVQ  700 (1075)
Q Consensus       655 a~kE~Eev~lE~~rLekER~Ei~~~ke~le~e~aEm~kdIeeL~~l  700 (1075)
                      +..+...++.++.+|+..-.++......+..+|-+++.++.++..-
T Consensus       356 ~~~~~~~l~~ei~~l~~~~~~~~~~l~~l~~~l~~~~~~~~~~~ke  401 (562)
T PHA02562        356 LVDKAKKVKAAIEELQAEFVDNAEELAKLQDELDKIVKTKSELVKE  401 (562)
T ss_pred             HHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445556666666666666665556666666666666666655433

>PRK12704 phosphodiesterase; Provisional

Probab=95.12  E-value=0.29  Score=58.12  Aligned_cols=62  Identities=31%  Similarity=0.323  Sum_probs=30.5

Q ss_pred             HHhhhHHHHHHHHHHHHHhhhhhhhhhHHHHHhhhhhHHHhHHHHHHhhhhHHHHhhhhHHHHhh
Q 001447          359 IKYKLAEDEIEKKRRAWELRDLDLGQREESLLEREHDLEVQSRALVDKEKDLVERSHLLEEKENK  423 (1075)
Q Consensus       359 ~krKs~eeEle~K~~~~E~rEvel~h~Eekl~kREqaLe~k~~~lkEKEkdl~~Ksk~LKEkEks  423 (1075)
                      ..+..++.++...+.+++   .++..++..+.+||..|+.+.+.|..++..|+.+-..|..+++.
T Consensus        57 e~~leaeeE~~~~R~Ele---~e~~~~e~~L~qrE~rL~~Ree~Le~r~e~Lekke~eL~~re~~  118 (520)
T PRK12704         57 EALLEAKEEIHKLRNEFE---KELRERRNELQKLEKRLLQKEENLDRKLELLEKREEELEKKEKE  118 (520)
T ss_pred             HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333344456655555554   34555566666666555554444444444444444444333333

>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]

Probab=95.04  E-value=16  Score=47.28  Aligned_cols=94  Identities=19%  Similarity=0.256  Sum_probs=66.1

Q ss_pred             HHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH---HHHHhhhhhhhhhHHHHHHHHHHH
Q 001447          492 EELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVERV---VVSKSLKDERDSLRQERDAMRDQH  568 (1075)
Q Consensus       492 eEId~~R~Qke~LlkEae~Lk~eKekFE~EWE~LDEKR~el~KEa~~I~eEre---~lek~~~~E~erLK~Ek~~~r~~~  568 (1075)
                      -.|......-.-..+.+..++..-++|+++|..++-++++..+|.+.....|-   ++..-...|.+||+.+-...-   
T Consensus       303 ~rl~~~~k~i~~~kk~~~~~~~~ie~~ek~l~av~~~~~~fekei~~~~q~rg~~lnl~d~~~~ey~rlk~ea~~~~---  379 (1141)
T KOG0018|consen  303 KRLEEIEKDIETAKKDYRALKETIERLEKELKAVEGAKEEFEKEIEERSQERGSELNLKDDQVEEYERLKEEACKEA---  379 (1141)
T ss_pred             hHHHHhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCcchHHHHHHHHHHHHHhhhh---
Confidence            33444444455566778889999999999999999999999999999887554   455555667788877654433   


Q ss_pred             HhhhhhhhhhHHHHHHhhhh
Q 001447          569 KRDVDSLNREREEFMNKMVH  588 (1075)
Q Consensus       569 krelE~L~~ekEsF~~~Meh  588 (1075)
                      ..+|+.|++...+=-+...|
T Consensus       380 ~~el~~ln~~~r~~~~~ld~  399 (1141)
T KOG0018|consen  380 LEELEVLNRNMRSDQDTLDH  399 (1141)
T ss_pred             HHHHHHHHHHHHHHHHHHhh
Confidence            66666666655544444443

>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF

Probab=94.88  E-value=0.37  Score=57.21  Aligned_cols=70  Identities=29%  Similarity=0.291  Sum_probs=36.8

Q ss_pred             HHhhhHHHHHHHHHHHHHhhhhhhhhhHHHHHhhhhhHHHhHHHHHHhhhhHHHHhhhhHHHHhhhHHHHHHh
Q 001447          359 IKYKLAEDEIEKKRRAWELRDLDLGQREESLLEREHDLEVQSRALVDKEKDLVERSHLLEEKENKLIAFEKEA  431 (1075)
Q Consensus       359 ~krKs~eeEle~K~~~~E~rEvel~h~Eekl~kREqaLe~k~~~lkEKEkdl~~Ksk~LKEkEksL~aeEK~l  431 (1075)
                      ..+..+++++..++.+++   .++..++..+.+||..|+.+.+.|..++..|+.+-+.|..+++.|..-++++
T Consensus        51 e~~~EaeeE~~~~R~Ele---~el~~~e~rL~qrE~rL~qRee~Lekr~e~Lekre~~Le~ke~~L~~re~eL  120 (514)
T TIGR03319        51 EALLEAKEEVHKLRAELE---RELKERRNELQRLERRLLQREETLDRKMESLDKKEENLEKKEKELSNKEKNL  120 (514)
T ss_pred             HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333344556666665554   4455566666666666655555555555555554444444444444444433

>PRK00106 hypothetical protein; Provisional

Probab=94.85  E-value=1.2  Score=53.34  Aligned_cols=13  Identities=23%  Similarity=0.393  Sum_probs=10.0

Q ss_pred             cccchhhhhhccC
Q 001447          895 SEDGIHAARKRRV  907 (1075)
Q Consensus       895 ~~~~~~agrkrr~  907 (1075)
                      .--++||||-=||
T Consensus       475 ~~yaiqaGREiRv  487 (535)
T PRK00106        475 NSFALQAGREIRI  487 (535)
T ss_pred             HHHHHhcCCeEEE
Confidence            3457899999886

>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]

Probab=94.38  E-value=16  Score=44.39  Aligned_cols=311  Identities=17%  Similarity=0.184  Sum_probs=171.1

Q ss_pred             HHHHHHHHH----hhhhhhhhhhhhhhhHHHHHHHHHhhhhHHHHHhhhhhhHHHHHHhcchhHHhhhhHHHhhhhhHHH
Q 001447          130 LEKAVHEIR----AESAETKVAADSKFAEARCMVENAQKKFAEAEAKLHAAESLQAEANRYHRSAERKLQEVVAREDDLS  205 (1075)
Q Consensus       130 LEKAL~emr----~E~AeiK~tsesKLaEA~aLv~~~eeKslEvE~KL~aAea~~AEa~Rk~s~aeRkL~eVEaRE~~Lr  205 (1075)
                      |+.-+..+|    .+...||+.++.=++.|.-+|+.+......++..+.....-+.++-.+.-.+               
T Consensus        68 L~~di~~lr~~~~~~ts~ik~~ye~El~~ar~~l~e~~~~ra~~e~ei~kl~~e~~elr~~~~~~---------------  132 (546)
T KOG0977|consen   68 LEHDINLLRGVVGRETSGIKAKYEAELATARKLLDETARERAKLEIEITKLREELKELRKKLEKA---------------  132 (546)
T ss_pred             HHHHHHHHHhhccCCCcchhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH---------------
Confidence            344444444    4778999999999999999999998888887777766555555443332222               


Q ss_pred             HHHhHhhhhhhhHHHHHHHHHhchHHHHHHHHHHHHHHHHHhhhhhhhhHhhHhhHHHHhHhHHHHHHHhhcHHHHHHHH
Q 001447          206 RRIASFKADCEEKEREIIRERQSLSDRKKILQQEHERLLDAQTLLNEREDHILSKLQELSRKEKELEASRANVEEKFKAL  285 (1075)
Q Consensus       206 RerlSf~~E~ea~E~~~~~qRe~L~eweKkLqe~eerL~e~q~~LNqREe~~~e~~~~l~~kEkeLEe~kkkie~~~~~L  285 (1075)
                                   ++...--|+++.+|...|-+.+.-++-.++.+..=++.....-+...++..+|..+++-++.+...-
T Consensus       133 -------------~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~~ld~Etllr  199 (546)
T KOG0977|consen  133 -------------EKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAENSRLREELARARKQLDDETLLR  199 (546)
T ss_pred             -------------HHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Confidence                         1222234677888888888888888888887777777777777788888888888888887775443


Q ss_pred             hhhhhhhhHhHHHhhhhHHHHHHHHHHHHHhHHhHHHHHHHHhhhhh-HHHHHHH-HHhHHHHhhhhhhHHHHHHHHhhh
Q 001447          286 NEEKSNLDLTLVSLLKREEAVIEREASLQKKEQKLLVSQETLASKES-NEIQKII-ANHESALRVKQSEFEAELAIKYKL  363 (1075)
Q Consensus       286 k~ke~dl~~rl~~l~~rEee~~~~~~~Le~KEkELl~leEKL~aRE~-~EIQKLl-deh~a~L~~Kk~eFElElE~krKs  363 (1075)
                      .+-...+..-+..|.-.          ...=+.+|.+..-+ ..|+. ...+... ++-..++.-=+.+||.-+..-|+.
T Consensus       200 ~d~~n~~q~Lleel~f~----------~~~h~~eI~e~~~~-~~rd~t~~~r~~F~~eL~~Ai~eiRaqye~~~~~nR~d  268 (546)
T KOG0977|consen  200 VDLQNRVQTLLEELAFL----------KRIHKQEIEEERRK-ARRDTTADNREYFKNELALAIREIRAQYEAISRQNRKD  268 (546)
T ss_pred             HHHHhHHHHHHHHHHHH----------HhccHHHHHHHHHH-HhhcccccchHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence            33322222222222111          11222333332222 12221 1111110 011122223344566666677777


Q ss_pred             HHHHHHHHHHHHHhhhhhhhhhHHHHHhhhhhHHHhHHHHHHhhhhHHHHhhhhHHHHhhhHHHHHHhHHHHHHHHHHHH
Q 001447          364 AEDEIEKKRRAWELRDLDLGQREESLLEREHDLEVQSRALVDKEKDLVERSHLLEEKENKLIAFEKEADLKKSLLQKEKE  443 (1075)
Q Consensus       364 ~eeEle~K~~~~E~rEvel~h~Eekl~kREqaLe~k~~~lkEKEkdl~~Ksk~LKEkEksL~aeEK~le~ek~~L~~ekE  443 (1075)
                      ++.=.+.|+.++...=.--+          ..-+..-+.|...-.-+.+-..-|-+-|..-.+.++.|+.=+.+|..|+.
T Consensus       269 iE~~Y~~kI~~i~~~~~~~~----------~~~~~~rEEl~~~R~~i~~Lr~klselE~~n~~L~~~I~dL~~ql~e~~r  338 (546)
T KOG0977|consen  269 IESWYKRKIQEIRTSAERAN----------VEQNYAREELRRIRSRISGLRAKLSELESRNSALEKRIEDLEYQLDEDQR  338 (546)
T ss_pred             HHHHHHHHHHHHHhhhcccc----------chhHHHHHHHHHHHhcccchhhhhccccccChhHHHHHHHHHhhhhhhhh
Confidence            77777777776653110000          00111112222222222222223333344555556666666777777766


Q ss_pred             HHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHH
Q 001447          444 EVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEAMKSEAGELSVLEIKLKEELDVVRA  499 (1075)
Q Consensus       444 el~~lK~dlEK~~a~~e~q~~qi~ee~E~LkiteeER~E~~~LQ~eLKeEId~~R~  499 (1075)
                      ..+..=++.+...+.+-++..++.-          |...|+-.+.-|--||..||.
T Consensus       339 ~~e~~L~~kd~~i~~mReec~~l~~----------Elq~LlD~ki~Ld~EI~~YRk  384 (546)
T KOG0977|consen  339 SFEQALNDKDAEIAKMREECQQLSV----------ELQKLLDTKISLDAEIAAYRK  384 (546)
T ss_pred             hhhhhhhhHHHHHHHHHHHHHHHHH----------HHHHhhchHhHHHhHHHHHHH
Confidence            6655555544444444444444444          444455555788889999985

>PRK04863 mukB cell division protein MukB; Provisional

Probab=94.17  E-value=30  Score=46.60  Aligned_cols=106  Identities=15%  Similarity=0.209  Sum_probs=57.8

Q ss_pred             HhhhhhhHHHHHHhcchhHHhhhhHHHhhhhhHHHHHHhHhhhhhhhHHHHHHHHHhchHHHHHHHHHHHHHHHHHhhhh
Q 001447          171 AKLHAAESLQAEANRYHRSAERKLQEVVAREDDLSRRIASFKADCEEKEREIIRERQSLSDRKKILQQEHERLLDAQTLL  250 (1075)
Q Consensus       171 ~KL~aAea~~AEa~Rk~s~aeRkL~eVEaRE~~LrRerlSf~~E~ea~E~~~~~qRe~L~eweKkLqe~eerL~e~q~~L  250 (1075)
                      .|+..|..++..+..+...++..+.+++.+...|++++-....-....+ ++...-..+..+...+.+...++.+....+
T Consensus       293 ~rk~eA~kkLe~tE~nL~rI~diL~ELe~rL~kLEkQaEkA~kyleL~e-e~lr~q~ei~~l~~~LeELee~Lee~eeeL  371 (1486)
T PRK04863        293 RELYTSRRQLAAEQYRLVEMARELAELNEAESDLEQDYQAASDHLNLVQ-TALRQQEKIERYQADLEELEERLEEQNEVV  371 (1486)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5666666666666666666667777777777777776665543322222 222223344444555555555555555555


Q ss_pred             hhhhHhhHhhHHHHhHhHHHHHHHhhc
Q 001447          251 NEREDHILSKLQELSRKEKELEASRAN  277 (1075)
Q Consensus       251 NqREe~~~e~~~~l~~kEkeLEe~kkk  277 (1075)
                      .+-.+.+.+....+...+.++..++..
T Consensus       372 eeleeeleeleeEleelEeeLeeLqeq  398 (1486)
T PRK04863        372 EEADEQQEENEARAEAAEEEVDELKSQ  398 (1486)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            555555555555555555555544443

>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised

Probab=94.02  E-value=1.1  Score=46.93  Aligned_cols=70  Identities=33%  Similarity=0.395  Sum_probs=45.3

Q ss_pred             HHHHHhhhHHHHHHHHHHHHHhhhhhhhhhHHHHHhhhhhHHHhHHHHHHhhhhHHHHhhhhHHHHhhhH
Q 001447          356 ELAIKYKLAEDEIEKKRRAWELRDLDLGQREESLLEREHDLEVQSRALVDKEKDLVERSHLLEEKENKLI  425 (1075)
Q Consensus       356 ElE~krKs~eeEle~K~~~~E~rEvel~h~Eekl~kREqaLe~k~~~lkEKEkdl~~Ksk~LKEkEksL~  425 (1075)
                      ++...|..++.|+..++.++..+|..|..+|+.|..+...|+++...|..++.+|..+...|+.++..+.
T Consensus        61 e~~~~r~~~E~E~~~~~~el~~~E~rl~~rE~~L~~~~~~L~~~e~~l~~~~~~l~~~~~~l~~~~~e~~  130 (201)
T PF12072_consen   61 EAQKLRQELERELKERRKELQRLEKRLQQREEQLDRRLEQLEKREEELEKKEEELEQRKEELEEREEELE  130 (201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4555777888888888888777777666666666666666666655555555555555555555544443

This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity

>PHA02562 46 endonuclease subunit; Provisional

Probab=93.72  E-value=18  Score=42.39  Aligned_cols=49  Identities=31%  Similarity=0.252  Sum_probs=25.8

Q ss_pred             HHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 001447          490 LKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAER  538 (1075)
Q Consensus       490 LKeEId~~R~Qke~LlkEae~Lk~eKekFE~EWE~LDEKR~el~KEa~~  538 (1075)
                      +..++..++...+.|.....++..+....+.+|..+...++++.++...
T Consensus       356 ~~~~~~~l~~ei~~l~~~~~~~~~~l~~l~~~l~~~~~~~~~~~ke~~~  404 (562)
T PHA02562        356 LVDKAKKVKAAIEELQAEFVDNAEELAKLQDELDKIVKTKSELVKEKYH  404 (562)
T ss_pred             HHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444444444444444445555555555555666666666666555544

>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]

Probab=93.38  E-value=33  Score=44.42  Aligned_cols=115  Identities=22%  Similarity=0.287  Sum_probs=60.3

Q ss_pred             HHhHHhHHHHHHHHhhhhhHHHHHHHHH---hHHHHhhhhhhHH--HHHHHHhhhHH-----HHHHHHHHHHHhhhhhhh
Q 001447          314 QKKEQKLLVSQETLASKESNEIQKIIAN---HESALRVKQSEFE--AELAIKYKLAE-----DEIEKKRRAWELRDLDLG  383 (1075)
Q Consensus       314 e~KEkELl~leEKL~aRE~~EIQKLlde---h~a~L~~Kk~eFE--lElE~krKs~e-----eEle~K~~~~E~rEvel~  383 (1075)
                      +.+|.-|..++|+-..+++  |+.||..   -=-.|+.-|-+++  -+++..|++++     .|+..=+..++.-|.+..
T Consensus       170 erreeSlkim~ET~qK~ek--I~ell~yieerLreLEeEKeeL~~Yqkldk~rr~lEYtiYdrEl~E~~~~l~~le~~r~  247 (1200)
T KOG0964|consen  170 ERREESLKIMEETKQKREK--INELLKYIEERLRELEEEKEELEKYQKLDKERRSLEYTIYDRELNEINGELERLEEDRS  247 (1200)
T ss_pred             HhHHHHHHHHHHHhhhHHH--HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHhhhhhhhhhhHHHHHHHHHHHHHHHHh
Confidence            4566677788888877765  5555544   2223333333333  25667777764     333333333444343332


Q ss_pred             h---hHHHHHhhhhhHHHhHHHHHHhhhhHHHHhhhhHHHHhhhHHHHHH
Q 001447          384 Q---REESLLEREHDLEVQSRALVDKEKDLVERSHLLEEKENKLIAFEKE  430 (1075)
Q Consensus       384 h---~Eekl~kREqaLe~k~~~lkEKEkdl~~Ksk~LKEkEksL~aeEK~  430 (1075)
                      .   .=..+.-+-....-.++.++..=+.|+.++..|.+--..+.+.+-+
T Consensus       248 ~~~e~s~~~~~~~~~~~d~~~~~~~~i~ele~~l~~l~~ekeq~~a~~t~  297 (1200)
T KOG0964|consen  248 SAPEESEQYIDALDKVEDESEDLKCEIKELENKLTNLREEKEQLKARETK  297 (1200)
T ss_pred             ccchhhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            2   2222222223333445556666667777777777755555555433

>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function

Probab=92.81  E-value=27  Score=41.90  Aligned_cols=147  Identities=22%  Similarity=0.267  Sum_probs=77.8

Q ss_pred             hhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 001447          423 KLIAFEKEADLKKSLLQKEKEEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEAMKSEAGELSVLEIKLKEELDVVRAQKL  502 (1075)
Q Consensus       423 sL~aeEK~le~ek~~L~~ekEel~~lK~dlEK~~a~~e~q~~qi~ee~E~LkiteeER~E~~~LQ~eLKeEId~~R~Qke  502 (1075)
                      .|.+..++|+.-+..|.+=+.++..|...++.++.+++..+..+..-+++.......-       .-|..++..+|..-.
T Consensus       282 ~l~s~~~ELe~ak~~L~~~k~E~~~L~~~vesL~~ELe~~K~el~~lke~e~~a~~~v-------~~L~~eL~~~r~eLe  354 (522)
T PF05701_consen  282 SLASAKKELEEAKKELEKAKEEASSLRASVESLRSELEKEKEELERLKEREKEASSEV-------SSLEAELNKTRSELE  354 (522)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH-------hhHHHHHHHHHHHHH
Confidence            3667777787778888888888888888888888888877777777777665555433       334444444444443


Q ss_pred             HhHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhhhhhhhhhHHHH
Q 001447          503 ELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVERVVVSKSLKDERDSLRQERDAMRDQHKRDVDSLNREREEF  582 (1075)
Q Consensus       503 ~LlkEae~Lk~eKekFE~EWE~LDEKR~el~KEa~~I~eEre~lek~~~~E~erLK~Ek~~~r~~~krelE~L~~ekEsF  582 (1075)
                      ....+..+.+.       .|..|--.-.++..|++....+..    ....|-..++.+-..++..+.-=-..|......+
T Consensus       355 a~~~~e~~~k~-------~~~~l~~~Lqql~~Eae~Ak~ea~----~~~~E~~~~k~E~e~~ka~i~t~E~rL~aa~ke~  423 (522)
T PF05701_consen  355 AAKAEEEKAKE-------AMSELPKALQQLSSEAEEAKKEAE----EAKEEVEKAKEEAEQTKAAIKTAEERLEAALKEA  423 (522)
T ss_pred             HHHhhhcchhh-------hHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333222211       222222222333333332221111    1224555555555555555554444444444444


Q ss_pred             HHhhh
Q 001447          583 MNKMV  587 (1075)
Q Consensus       583 ~~~Me  587 (1075)
                      .+-..
T Consensus       424 eaaKa  428 (522)
T PF05701_consen  424 EAAKA  428 (522)
T ss_pred             HHHHH
Confidence            44333

Several sequences in this family are described as being myosin heavy chain-like.

>PF13851 GAS: Growth-arrest specific micro-tubule binding

Probab=92.10  E-value=19  Score=38.39  Aligned_cols=143  Identities=19%  Similarity=0.286  Sum_probs=92.6

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHH
Q 001447          480 AGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVERVVVSKSLKDERDSLRQ  559 (1075)
Q Consensus       480 R~E~~~LQ~eLKeEId~~R~Qke~LlkEae~Lk~eKekFE~EWE~LDEKR~el~KEa~~I~eEre~lek~~~~E~erLK~  559 (1075)
                      |..-+.|-.-||++|...|.+....-+...++.++-.+.-.--..+.+.+++|++.+......+..|....         
T Consensus        22 T~~NL~lIksLKeei~emkk~e~~~~k~m~ei~~eN~~L~epL~~a~~e~~eL~k~L~~y~kdK~~L~~~k---------   92 (201)
T PF13851_consen   22 TLNNLELIKSLKEEIAEMKKKEERNEKLMAEISQENKRLSEPLKKAEEEVEELRKQLKNYEKDKQSLQNLK---------   92 (201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------
Confidence            44566777889999999999999999999999999999999999999999999998887665554443322         


Q ss_pred             HHHHHHHHHHhhhhhhhhhHHHHH---HhhhhhhhhHHHHHHHHHHHhhhhhHhhhhhh-HHHHHHHHHHHHhHHHHHHH
Q 001447          560 ERDAMRDQHKRDVDSLNREREEFM---NKMVHEHSEWFTKIQQERADFLLGIEMQKRDL-ENCIEKRREELESSFREREK  635 (1075)
Q Consensus       560 Ek~~~r~~~krelE~L~~ekEsF~---~~MehErs~~~eKiq~Erad~l~d~EmqkreL-E~~iq~RqEEiE~~L~EREk  635 (1075)
                        ..+. ....++..|..+.+.+.   .+++.||.+|..+-..    +++|+. ||-.+ ..-++++...+...|..|+.
T Consensus        93 --~rl~-~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~kf~~----~i~evq-Qk~~~kn~lLEkKl~~l~~~lE~kea  164 (201)
T PF13851_consen   93 --ARLK-ELEKELKDLKWEHEVLEQRFEKLEQERDELYRKFES----AIQEVQ-QKTGLKNLLLEKKLQALSEQLEKKEA  164 (201)
T ss_pred             --HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence              1111 23556666666666554   3444555555544442    233332 22222 33455566666666666665


Q ss_pred             HHHH
Q 001447          636 AFEE  639 (1075)
Q Consensus       636 ~FEe  639 (1075)
                      .+.+
T Consensus       165 qL~e  168 (201)
T PF13851_consen  165 QLNE  168 (201)
T ss_pred             HHHH
Confidence            5543

>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=92.10  E-value=43  Score=42.56  Aligned_cols=118  Identities=23%  Similarity=0.294  Sum_probs=74.2

Q ss_pred             HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHH
Q 001447          439 QKEKEEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEAMKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKF  518 (1075)
Q Consensus       439 ~~ekEel~~lK~dlEK~~a~~e~q~~qi~ee~E~LkiteeER~E~~~LQ~eLKeEId~~R~Qke~LlkEae~Lk~eKekF  518 (1075)
                      .+-++.+.+=.++|++-|-.+++|.++-.++.++.+--+.+|-+-.|++.+=|.+++        |.++.++-+.    .
T Consensus       316 DKrkeNy~kGqaELerRRq~leeqqqreree~eqkEreE~ekkererqEqErk~qlE--------lekqLerQRe----i  383 (1118)
T KOG1029|consen  316 DKRKENYEKGQAELERRRQALEEQQQREREEVEQKEREEEEKKERERQEQERKAQLE--------LEKQLERQRE----I  383 (1118)
T ss_pred             hhhHHhHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHH----H
Confidence            356788888899999999999999999999999999999998888887776665544        3333322111    0


Q ss_pred             HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhhhhhhh
Q 001447          519 EAEWEMIDEKREELRKEAERVAVERVVVSKSLKDERDSLRQERDAMRDQHKRDVDSLN  576 (1075)
Q Consensus       519 E~EWE~LDEKR~el~KEa~~I~eEre~lek~~~~E~erLK~Ek~~~r~~~krelE~L~  576 (1075)
                      |      -.+-++-.|+.++-.--|+.+++...-|-+|.|.  ..|.+|..|+-|-+-
T Consensus       384 E------~qrEEerkkeie~rEaar~ElEkqRqlewErar~--qem~~Qk~reqe~iv  433 (1118)
T KOG1029|consen  384 E------RQREEERKKEIERREAAREELEKQRQLEWERARR--QEMLNQKNREQEWIV  433 (1118)
T ss_pred             H------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHhhhhHHHHHHH
Confidence            1      1112222334444444556666666666665543  345555555544443

>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=91.78  E-value=56  Score=43.16  Aligned_cols=338  Identities=16%  Similarity=0.182  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHhhhhhhhhHhhHhhHHHHhHhHHHHHHHhhcHHHHHHHHhhhhhhhhHhHHHhhhhHHHHHHHHHHHHH
Q 001447          236 LQQEHERLLDAQTLLNEREDHILSKLQELSRKEKELEASRANVEEKFKALNEEKSNLDLTLVSLLKREEAVIEREASLQK  315 (1075)
Q Consensus       236 Lqe~eerL~e~q~~LNqREe~~~e~~~~l~~kEkeLEe~kkkie~~~~~Lk~ke~dl~~rl~~l~~rEee~~~~~~~Le~  315 (1075)
                      +++...|+.-.--...+-+.+..=-++..+.+|....++-.-+..++..+.-+.-.+.-.+..   .=..+......+..
T Consensus       269 I~~~~~rv~~L~e~~sek~~~~k~~e~ek~~lE~~k~~al~fL~kenel~~~~~~~~q~~~~~---~~~ki~~~~~~~~~  345 (1293)
T KOG0996|consen  269 IEELMRRVERLNEDRSEKENRVKLVEKEKKALEGPKNEALEFLKKENELFRKKNKLCQYILYE---SRAKIAEMQEELEK  345 (1293)
T ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH


Q ss_pred             hHHhHHHHHHHHhhhhhHHHHHHHHHhHHHHhhhhhhHHHHHHHHhhhHHHHHHHHHHHHHhhhhhhhhhHHHHHhhhhh
Q 001447          316 KEQKLLVSQETLASKESNEIQKIIANHESALRVKQSEFEAELAIKYKLAEDEIEKKRRAWELRDLDLGQREESLLEREHD  395 (1075)
Q Consensus       316 KEkELl~leEKL~aRE~~EIQKLldeh~a~L~~Kk~eFElElE~krKs~eeEle~K~~~~E~rEvel~h~Eekl~kREqa  395 (1075)
                      -+.+|...-+|+..-...+.++.-+-     .....+-..++.+++.+.-.++..=-+.-.+++-.++|.=.++.|-+..
T Consensus       346 ~~e~lk~~~ek~~~e~~~~~~k~e~~-----~~~~~e~~~~~kn~~~~~k~~~~~~e~~~vk~~E~lK~~~~k~kKleke  420 (1293)
T KOG0996|consen  346 IEEGLKDENEKFDIESNEEVEKNEAV-----KKEIKERAKELKNKFESLKKKFQDLEREDVKREEKLKRLTSKIKKLEKE  420 (1293)
T ss_pred             HHhHHHHHHHHhhhhhhHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH


Q ss_pred             HHHhHHHHHHhhhhHHHHhhhhHHHHhhhHHHHHHhHHHHHHHHHHHHHHHH----HHHHHHHhhhhhHHHHHHHHHHHh
Q 001447          396 LEVQSRALVDKEKDLVERSHLLEEKENKLIAFEKEADLKKSLLQKEKEEVNI----IKSDLQKSLSSLDEKKKQVNCAKD  471 (1075)
Q Consensus       396 Le~k~~~lkEKEkdl~~Ksk~LKEkEksL~aeEK~le~ek~~L~~ekEel~~----lK~dlEK~~a~~e~q~~qi~ee~E  471 (1075)
                      +++-.++..+.++-.+.=....-+-...+...++.++.+...|...+.++..    +..++.++...+..-..++.+++.
T Consensus       421 ~ek~~~~~~e~e~~pe~~~~~i~~~~~ei~~L~~~~~~~~~~l~e~~~~l~~~t~~~~~e~~~~ekel~~~~~~~n~~~~  500 (1293)
T KOG0996|consen  421 IEKARRKKSELEKAPEKARIEIQKCQTEIEQLEELLEKEERELDEILDSLKQETEGIREEIEKLEKELMPLLKQVNEARS  500 (1293)
T ss_pred             HHHHHhhHHHHHhCchhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH


Q ss_pred             hhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 001447          472 KLEAMKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVERVVVSKSLK  551 (1075)
Q Consensus       472 ~LkiteeER~E~~~LQ~eLKeEId~~R~Qke~LlkEae~Lk~eKekFE~EWE~LDEKR~el~KEa~~I~eEre~lek~~~  551 (1075)
                      .+.+.++|=.-|+-.+..+..-.+.+-.+..-+++..++.+..--....+...+--+..++.+++.....+=..+...++
T Consensus       501 e~~vaesel~~L~~~~~~~~~~~e~lk~~L~~~~~~~~e~~~~l~~~k~~l~~~k~e~~~~~k~l~~~~~e~~~~~~~~~  580 (1293)
T KOG0996|consen  501 ELDVAESELDILLSRHETGLKKVEELKGKLLASSESLKEKKTELDDLKEELPSLKQELKEKEKELPKLRKEERNLKSQLN  580 (1293)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHH


Q ss_pred             hhhhhhHHHHHHHHHHHHhh--hhhhhhhHHH
Q 001447          552 DERDSLRQERDAMRDQHKRD--VDSLNREREE  581 (1075)
Q Consensus       552 ~E~erLK~Ek~~~r~~~kre--lE~L~~ekEs  581 (1075)
                      .=+.++-.-+..|...-.+.  |.+|.+.+++
T Consensus       581 ~~rqrveE~ks~~~~~~s~~kVl~al~r~kes  612 (1293)
T KOG0996|consen  581 KLRQRVEEAKSSLSSSRSRNKVLDALMRLKES  612 (1293)
T ss_pred             HHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHc

>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised

Probab=91.60  E-value=5  Score=42.22  Aligned_cols=59  Identities=25%  Similarity=0.383  Sum_probs=38.1

Q ss_pred             HHHhhhhhhhhhHHHHHhhhhhHHHhHHHHHHhhhhHHHHhhhhHHHHhhhHHHHHHhH
Q 001447          374 AWELRDLDLGQREESLLEREHDLEVQSRALVDKEKDLVERSHLLEEKENKLIAFEKEAD  432 (1075)
Q Consensus       374 ~~E~rEvel~h~Eekl~kREqaLe~k~~~lkEKEkdl~~Ksk~LKEkEksL~aeEK~le  432 (1075)
                      ++..+..++..+|..+.+||..|+.+.+.|..++..|+.+...|..+...|...+..++
T Consensus        72 E~~~~~~el~~~E~rl~~rE~~L~~~~~~L~~~e~~l~~~~~~l~~~~~~l~~~~~e~~  130 (201)
T PF12072_consen   72 ELKERRKELQRLEKRLQQREEQLDRRLEQLEKREEELEKKEEELEQRKEELEEREEELE  130 (201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34556666677777777777777777777777666666666666666555555555553

This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity

>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]

Probab=90.67  E-value=35  Score=38.88  Aligned_cols=53  Identities=23%  Similarity=0.366  Sum_probs=35.6

Q ss_pred             hhHHHhHHHHHHhhhhHHHHhhhhHHHHhhhHHHHHHhHHHHHHHHHHHHHHH
Q 001447          394 HDLEVQSRALVDKEKDLVERSHLLEEKENKLIAFEKEADLKKSLLQKEKEEVN  446 (1075)
Q Consensus       394 qaLe~k~~~lkEKEkdl~~Ksk~LKEkEksL~aeEK~le~ek~~L~~ekEel~  446 (1075)
                      ..|..++..+.++--++-.+.+.+.++=+++++....|..+-.+|-..+.+++
T Consensus        30 ~El~~~~~~~~ekRdeln~kvrE~~e~~~elr~~rdeineev~elK~kR~ein   82 (294)
T COG1340          30 DELRKEASELAEKRDELNAKVRELREKAQELREERDEINEEVQELKEKRDEIN   82 (294)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            56666667777777777777777777777777777777666666666655554

>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope

Probab=90.06  E-value=33  Score=37.54  Aligned_cols=241  Identities=25%  Similarity=0.330  Sum_probs=125.9

Q ss_pred             HHHHHHHHHHHH----HHhhhhhHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHH
Q 001447          441 EKEEVNIIKSDL----QKSLSSLDEKKKQVNCAKDKLEAMKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKA  516 (1075)
Q Consensus       441 ekEel~~lK~dl----EK~~a~~e~q~~qi~ee~E~LkiteeER~E~~~LQ~eLKeEId~~R~Qke~LlkEae~Lk~eKe  516 (1075)
                      +|++|..|++-+    ++.+ +++.+-..+......+....  ......+..-.-.+|..+|.+-..+..|...|..+..
T Consensus         2 EK~eL~~LNdRla~YIekVr-~LE~~N~~Le~~i~~~~~~~--~~~~~~~~~~ye~el~~lr~~id~~~~eka~l~~e~~   78 (312)
T PF00038_consen    2 EKEELQSLNDRLASYIEKVR-FLEQENKRLESEIEELREKK--GEEVSRIKEMYEEELRELRRQIDDLSKEKARLELEID   78 (312)
T ss_dssp             CHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH-----------HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHH-HHHHHhhhhHHHHHHHHhcc--cccCcccccchhhHHHHhHHhhhhHHHHhhHHhhhhh
Confidence            456666555543    3443 34444444444444444442  3444556677778888888888888888888888888


Q ss_pred             HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHH---HHHHHHHhhhhhhhhhHHHHHHhhhhhhhhH
Q 001447          517 KFEAEWEMIDEKREELRKEAERVAVERVVVSKSLKDERDSLRQERD---AMRDQHKRDVDSLNREREEFMNKMVHEHSEW  593 (1075)
Q Consensus       517 kFE~EWE~LDEKR~el~KEa~~I~eEre~lek~~~~E~erLK~Ek~---~~r~~~krelE~L~~ekEsF~~~MehErs~~  593 (1075)
                      +...+.+.+-.|-.........+.           ++-..|+...+   ..+......+.+|.-+-.-.....+.|-..+
T Consensus        79 ~l~~e~~~~r~k~e~e~~~~~~le-----------~el~~lrk~ld~~~~~r~~le~~i~~L~eEl~fl~~~heeEi~~L  147 (312)
T PF00038_consen   79 NLKEELEDLRRKYEEELAERKDLE-----------EELESLRKDLDEETLARVDLENQIQSLKEELEFLKQNHEEEIEEL  147 (312)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHH-----------HHHhhhhhhhhhhhhhHhHHHHHHHHHHHHHHHHHhhhhhhhhhh
Confidence            887777776555444433322222           23333333332   2344455556666655543333444455666


Q ss_pred             HHHHHHHHHHhhhhhH-hhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhHHH
Q 001447          594 FTKIQQERADFLLGIE-MQKRDLENCIEKRREELESSFREREKAFEEEKMREFQQISSLKEKAEKELEQVTLEIKRLDLE  672 (1075)
Q Consensus       594 ~eKiq~Erad~l~d~E-mqkreLE~~iq~RqEEiE~~L~EREk~FEeek~~EL~~IN~lkE~a~kE~Eev~lE~~rLekE  672 (1075)
                      -..++   ..+.-++. ....+|...|..-+.+.+.....--...+.--...+..|+.........+..++.|...+-..
T Consensus       148 ~~~~~---~~~~~e~~~~~~~dL~~~L~eiR~~ye~~~~~~~~e~e~~y~~k~~~l~~~~~~~~~~~~~~~~E~~~~r~~  224 (312)
T PF00038_consen  148 REQIQ---SSVTVEVDQFRSSDLSAALREIRAQYEEIAQKNREELEEWYQSKLEELRQQSEKSSEELESAKEELKELRRQ  224 (312)
T ss_dssp             STT-------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhccc---cccceeecccccccchhhhhhHHHHHHHHHhhhhhhhhhhcccccccccccccccccccchhHhHHHHHHhh
Confidence            66555   33333333 456677777777777777666555555555555666666666666666666666666665555


Q ss_pred             HHHhhhhhhhhhHHHHHHHhhHHHHH
Q 001447          673 RMEINMDRQRRDREWAELNNSIEELM  698 (1075)
Q Consensus       673 R~Ei~~~ke~le~e~aEm~kdIeeL~  698 (1075)
                      -+.+...-..+...-+.+.+.|.+|.
T Consensus       225 ~~~l~~el~~l~~~~~~Le~~l~~le  250 (312)
T PF00038_consen  225 IQSLQAELESLRAKNASLERQLRELE  250 (312)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhHhhhhhhccccchhhhhhhHHHHH
Confidence            54444444444444444444444443

They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....

>PRK12705 hypothetical protein; Provisional

Probab=89.78  E-value=19  Score=43.53  Aligned_cols=60  Identities=25%  Similarity=0.380  Sum_probs=33.7

Q ss_pred             HHHHhhhHHHHHHHHHHHHHhhhhhhhhhHHHHHhhhhhHHHhHHHHHHhhhhHHHHhhhhHHHHhh
Q 001447          357 LAIKYKLAEDEIEKKRRAWELRDLDLGQREESLLEREHDLEVQSRALVDKEKDLVERSHLLEEKENK  423 (1075)
Q Consensus       357 lE~krKs~eeEle~K~~~~E~rEvel~h~Eekl~kREqaLe~k~~~lkEKEkdl~~Ksk~LKEkEks  423 (1075)
                      +...|..++.+++.++.++..+       |..+.+||+.|+.+.+.|..++..|..+.+.|..+++.
T Consensus        61 ~~~~~~~~e~e~~~~~~~~~~~-------e~rl~~~e~~l~~~~~~l~~~~~~l~~~~~~l~~~~~~  120 (508)
T PRK12705         61 LLRERNQQRQEARREREELQRE-------EERLVQKEEQLDARAEKLDNLENQLEEREKALSARELE  120 (508)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344555556666666555555       44566666666666666666666555555544444443

>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function

Probab=88.20  E-value=76  Score=39.26  Aligned_cols=216  Identities=18%  Similarity=0.195  Sum_probs=118.9

Q ss_pred             hHhhHhhHHHHhHhHHHHHHHhhcHHHHHHHHhhhhhhhhHhHHHhhhhHHHHHHHHHHHHHhHHhHHHHHHHHhhhhhH
Q 001447          254 EDHILSKLQELSRKEKELEASRANVEEKFKALNEEKSNLDLTLVSLLKREEAVIEREASLQKKEQKLLVSQETLASKESN  333 (1075)
Q Consensus       254 Ee~~~e~~~~l~~kEkeLEe~kkkie~~~~~Lk~ke~dl~~rl~~l~~rEee~~~~~~~Le~KEkELl~leEKL~aRE~~  333 (1075)
                      +....+..+.+..+++.|+++...|+.-...++.-...+..-...+...+.....++..+..+++=...|...=..-  .
T Consensus       320 ~~~~~~~~~el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~~l~~k~~~lL~d~e~ni--~  397 (594)
T PF05667_consen  320 EDEQEEQEQELEELQEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELEEELKLKKKTVELLPDAEENI--A  397 (594)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHH--H
Confidence            34445666667777777777666666665555555555555544444444444444444444443322221110000  2


Q ss_pred             HHHHHHHHhHHHHhhhhhhHHHHHHHHhhhHHHHHHHHHHHHHhhhhhhhhhHHHHHhhhhhHHHhHHHHHHhhhhHHHH
Q 001447          334 EIQKIIANHESALRVKQSEFEAELAIKYKLAEDEIEKKRRAWELRDLDLGQREESLLEREHDLEVQSRALVDKEKDLVER  413 (1075)
Q Consensus       334 EIQKLldeh~a~L~~Kk~eFElElE~krKs~eeEle~K~~~~E~rEvel~h~Eekl~kREqaLe~k~~~lkEKEkdl~~K  413 (1075)
                      .+|.+++.    -..|..++..+.+..|.-+.++++.=+...              ..++-..-.+...++........-
T Consensus       398 kL~~~v~~----s~~rl~~L~~qWe~~R~pL~~e~r~lk~~~--------------~~~~~e~~~~~~~ik~~r~~~k~~  459 (594)
T PF05667_consen  398 KLQALVEA----SEQRLVELAQQWEKHRAPLIEEYRRLKEKA--------------SNRESESKQKLQEIKELREEIKEI  459 (594)
T ss_pred             HHHHHHHH----HHHHHHHHHHHHHHHHhHHHHHHHHHHHHH--------------hhcchHHHHHHHHHHHHHHHHHHH
Confidence            22233322    233445555555555655555544332222              222222233344444444444444


Q ss_pred             hhhhHHHHhhhHHHHHHhHHH---------HHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhhHH
Q 001447          414 SHLLEEKENKLIAFEKEADLK---------KSLLQKEKEEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEAMKSEAGELS  484 (1075)
Q Consensus       414 sk~LKEkEksL~aeEK~le~e---------k~~L~~ekEel~~lK~dlEK~~a~~e~q~~qi~ee~E~LkiteeER~E~~  484 (1075)
                      ...++.|+...+...+.++.-         ...++.=.-.|.+-|.||.|++..+-.=.++|+.-..+|.-|-.-.+|++
T Consensus       460 ~~e~~~Kee~~~qL~~e~e~~~k~~~Rs~Yt~RIlEIv~NI~KQk~eI~KIl~DTr~lQkeiN~l~gkL~RtF~v~dEli  539 (594)
T PF05667_consen  460 EEEIRQKEELYKQLVKELEKLPKDVNRSAYTRRILEIVKNIRKQKEEIEKILSDTRELQKEINSLTGKLDRTFTVTDELI  539 (594)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence            444444444444433333321         23455556678888999999999999999999999999999998888887


Q ss_pred             HHHHH
Q 001447          485 VLEIK  489 (1075)
Q Consensus       485 ~LQ~e  489 (1075)
                      -=.++
T Consensus       540 frdAK  544 (594)
T PF05667_consen  540 FRDAK  544 (594)
T ss_pred             HHHhh
Confidence            76666

>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD

Probab=87.44  E-value=80  Score=38.71  Aligned_cols=25  Identities=4%  Similarity=0.048  Sum_probs=15.4

Q ss_pred             ccccCCCccccCCCCcHHHHHHHHHccCC
Q 001447            9 LAITPSSRVLQSPLSDESIWKRLKEAGLD   37 (1075)
Q Consensus         9 l~~~~g~rv~~~~~~d~~iWkr~~eaG~D   37 (1075)
                      +++-.|    .++.|-..+-..++-+=|+
T Consensus        30 ~~~i~G----~Ng~GKttll~ai~~~LyG   54 (650)
T TIGR03185        30 IILIGG----LNGAGKTTLLDAIQLALYG   54 (650)
T ss_pred             EEEEEC----CCCCCHHHHHHHHHHHhcC
Confidence            444445    6677788887777655333

This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.

>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins

Probab=87.03  E-value=4.4  Score=49.78  Aligned_cols=22  Identities=32%  Similarity=0.646  Sum_probs=14.9

Q ss_pred             HHHHHHHHHhHHHHHHHHHHHH
Q 001447          619 IEKRREELESSFREREKAFEEE  640 (1075)
Q Consensus       619 iq~RqEEiE~~L~EREk~FEee  640 (1075)
                      ..+|..-+--.+..+-..|.+-
T Consensus       618 ~ekr~~RLkevf~~ks~eFr~a  639 (722)
T PF05557_consen  618 AEKRNQRLKEVFKAKSQEFREA  639 (722)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            3455555666778888888765

The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.

>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins

Probab=85.49  E-value=9.1  Score=47.13  Aligned_cols=69  Identities=30%  Similarity=0.286  Sum_probs=0.0

Q ss_pred             hhHhhHHHHhHhHHHHHHHhhcHHHHHHHHhhhhhhhhHhHHHhhhhHHHHHHHHHHHHHhHHhHHHHHH
Q 001447          256 HILSKLQELSRKEKELEASRANVEEKFKALNEEKSNLDLTLVSLLKREEAVIEREASLQKKEQKLLVSQE  325 (1075)
Q Consensus       256 ~~~e~~~~l~~kEkeLEe~kkkie~~~~~Lk~ke~dl~~rl~~l~~rEee~~~~~~~Le~KEkELl~leE  325 (1075)
                      |+..-.....+...++..++... .....|+++...|..++..+-.-+.++..++.....-|.++..|.-
T Consensus       258 ~i~~LE~en~~l~~Elk~Lr~~~-~n~elLeEe~~sLq~kl~~~E~~~~el~~lq~e~~~Le~el~sW~s  326 (722)
T PF05557_consen  258 HIRELEKENRRLREELKHLRQSQ-ENVELLEEEKRSLQRKLERLEELEEELAELQLENEKLEDELNSWES  326 (722)
T ss_dssp             ----------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444444444444444444332 3356788888888888888877777777777777777777777654

The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.

>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]

Probab=85.26  E-value=1.5e+02  Score=39.69  Aligned_cols=28  Identities=25%  Similarity=0.207  Sum_probs=21.4

Q ss_pred             HHHHHHhhHHHHHHHHHHHHHHHHHHHHh
Q 001447          686 EWAELNNSIEELMVQRQKLEEQRQLLHAD  714 (1075)
Q Consensus       686 e~aEm~kdIeeL~~ls~KLk~QRE~~~~E  714 (1075)
                      --.|++| +-+|..++.+|...|....++
T Consensus      1016 kE~EkrK-v~~L~qlr~~l~k~~l~~q~~ 1043 (1317)
T KOG0612|consen 1016 KEKEKRK-VMELSQLRTKLNKLRLKNQKE 1043 (1317)
T ss_pred             HHHHHHH-HHHHHHHHHHHHHHhhhhHHH
Confidence            3457788 899999999998888665544

>smart00787 Spc7 Spc7 kinetochore protein

Probab=85.12  E-value=76  Score=36.23  Aligned_cols=167  Identities=23%  Similarity=0.203  Sum_probs=112.7

Q ss_pred             HHHhHHHHHHhhhhHHHHhhhhHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhh
Q 001447          396 LEVQSRALVDKEKDLVERSHLLEEKENKLIAFEKEADLKKSLLQKEKEEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEA  475 (1075)
Q Consensus       396 Le~k~~~lkEKEkdl~~Ksk~LKEkEksL~aeEK~le~ek~~L~~ekEel~~lK~dlEK~~a~~e~q~~qi~ee~E~Lki  475 (1075)
                      |-+...++..|.-=++=|++-++.-...|...-..+......|.++-+-+..+...+....+.+..+..++.+....+..
T Consensus       121 lvK~~aRl~ak~~WYeWR~kllegLk~~L~~~~~~l~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~L~~~~~e~~~  200 (312)
T smart00787      121 LVKTFARLEAKKMWYEWRMKLLEGLKEGLDENLEGLKEDYKLLMKELELLNSIKPKLRDRKDALEEELRQLKQLEDELED  200 (312)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHh
Confidence            34455666666666777777766666665555555555555555555555555555555555555555444444333322


Q ss_pred             hhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 001447          476 MKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVERVVVSKSLKDERD  555 (1075)
Q Consensus       476 teeER~E~~~LQ~eLKeEId~~R~Qke~LlkEae~Lk~eKekFE~EWE~LDEKR~el~KEa~~I~eEre~lek~~~~E~e  555 (1075)
                      -  +..++..+..+|++    .=.+-....++.++++.+...-...++..-+++.+++.+.......++....|=-.|-.
T Consensus       201 ~--d~~eL~~lk~~l~~----~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~~~~~~r~~t~~Ei~  274 (312)
T smart00787      201 C--DPTELDRAKEKLKK----LLQEIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEIAEAEKKLEQCRGFTFKEIE  274 (312)
T ss_pred             C--CHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHH
Confidence            1  24566555555444    34445556667888999999999999999999999999999888888888889899999


Q ss_pred             hhHHHHHHHHHHH
Q 001447          556 SLRQERDAMRDQH  568 (1075)
Q Consensus       556 rLK~Ek~~~r~~~  568 (1075)
                      +||..-..++...
T Consensus       275 ~Lk~~~~~Le~l~  287 (312)
T smart00787      275 KLKEQLKLLQSLT  287 (312)
T ss_pred             HHHHHHHHHHHHh
Confidence            9999888887654

This domain is found in cell division proteins which are required for kinetochore-spindle association.

>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association []

Probab=84.58  E-value=77  Score=35.84  Aligned_cols=33  Identities=24%  Similarity=0.235  Sum_probs=13.0

Q ss_pred             HHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhhh
Q 001447          493 ELDVVRAQKLELMVETDKLQLEKAKFEAEWEMI  525 (1075)
Q Consensus       493 EId~~R~Qke~LlkEae~Lk~eKekFE~EWE~L  525 (1075)
                      +|+.++.+...+....+.+..++..+..+=..+
T Consensus       231 ~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~  263 (325)
T PF08317_consen  231 ELAELQEELEELEEKIEELEEQKQELLAEIAEA  263 (325)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333333333444444444444444333333

>PRK09039 hypothetical protein; Validated

Probab=81.93  E-value=1e+02  Score=35.38  Aligned_cols=114  Identities=16%  Similarity=0.205  Sum_probs=73.6

Q ss_pred             hhhhhhhHHHHHHhHHHHHHHHHhhhhhhhhhhhhhhhHHHHHHHHHhhhhHHHHHhhhhhhHHHHHHhcchhHHhhhhH
Q 001447          116 LKKTLGVEKECIASLEKAVHEIRAESAETKVAADSKFAEARCMVENAQKKFAEAEAKLHAAESLQAEANRYHRSAERKLQ  195 (1075)
Q Consensus       116 LkKALgvEKqCVadLEKAL~emr~E~AeiK~tsesKLaEA~aLv~~~eeKslEvE~KL~aAea~~AEa~Rk~s~aeRkL~  195 (1075)
                      |=-.|+.+..+-++|+-.|.+|+..+..    +...-+.+....++...-..+++..+....+.+++..-.++++.+...
T Consensus        65 L~e~L~le~~~~~~l~~~l~~l~~~l~~----a~~~r~~Le~~~~~~~~~~~~~~~~~~~l~~~L~~~k~~~se~~~~V~  140 (343)
T PRK09039         65 LADLLSLERQGNQDLQDSVANLRASLSA----AEAERSRLQALLAELAGAGAAAEGRAGELAQELDSEKQVSARALAQVE  140 (343)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHH----HHHHHHHHHHHHhhhhhhcchHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence            7778999999999999999999998882    333333333333322222335666666666666666666777777777


Q ss_pred             HHhhhhhHHHHHHhHhhhhhhhHHHHHHHHHhchHHHH
Q 001447          196 EVVAREDDLSRRIASFKADCEEKEREIIRERQSLSDRK  233 (1075)
Q Consensus       196 eVEaRE~~LrRerlSf~~E~ea~E~~~~~qRe~L~ewe  233 (1075)
                      -+-+.=.+||+++-++.++..+.+......+..+.+.+
T Consensus       141 ~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~  178 (343)
T PRK09039        141 LLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLG  178 (343)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            77777777777766666666666665544443333333

>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=81.48  E-value=66  Score=32.81  Aligned_cols=90  Identities=19%  Similarity=0.289  Sum_probs=66.8

Q ss_pred             HHhcchhHHhhhhHHHhhhhhHHHHHHhHhhhhhhhHHHHHHHHHhchHHHHHHHHHHHHHHHHHhhhhhhhhHhhHhhH
Q 001447          182 EANRYHRSAERKLQEVVAREDDLSRRIASFKADCEEKEREIIRERQSLSDRKKILQQEHERLLDAQTLLNEREDHILSKL  261 (1075)
Q Consensus       182 Ea~Rk~s~aeRkL~eVEaRE~~LrRerlSf~~E~ea~E~~~~~qRe~L~eweKkLqe~eerL~e~q~~LNqREe~~~e~~  261 (1075)
                      .|.-+...++-++++++.|-..+-.++.||..=..-.|.++..-...|.+-...|.++..+.....           ...
T Consensus        11 ~a~~r~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~~~~~E-----------~l~   79 (143)
T PF12718_consen   11 NAQDRAEELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEKRKSNAE-----------QLN   79 (143)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHH-----------HHH
Confidence            344455667778888888888888888888888888888888888888888888888887776554           334


Q ss_pred             HHHhHhHHHHHHHhhcHHHHH
Q 001447          262 QELSRKEKELEASRANVEEKF  282 (1075)
Q Consensus       262 ~~l~~kEkeLEe~kkkie~~~  282 (1075)
                      +-+..+|.+|+.+.+++..+.
T Consensus        80 rriq~LEeele~ae~~L~e~~  100 (143)
T PF12718_consen   80 RRIQLLEEELEEAEKKLKETT  100 (143)
T ss_pred             hhHHHHHHHHHHHHHHHHHHH
Confidence            456666777776666655443

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].

>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]

Probab=81.24  E-value=2.1e+02  Score=38.45  Aligned_cols=204  Identities=20%  Similarity=0.243  Sum_probs=104.5

Q ss_pred             HHHHHhchHHHHHHHHHHHHHHHHHhhhhhhhhHhhHhhHHHHhHh----HHHHHHHhhcHHHHHHHHhhhhhhhhHhHH
Q 001447          222 IIRERQSLSDRKKILQQEHERLLDAQTLLNEREDHILSKLQELSRK----EKELEASRANVEEKFKALNEEKSNLDLTLV  297 (1075)
Q Consensus       222 ~~~qRe~L~eweKkLqe~eerL~e~q~~LNqREe~~~e~~~~l~~k----EkeLEe~kkkie~~~~~Lk~ke~dl~~rl~  297 (1075)
                      |..--.+|..-+-+|....--+.-+.. |-++-+++.+....++..    ..-|+++.......-.+++.-..+|...-.
T Consensus      1520 I~e~v~sL~nVd~IL~~T~~di~ra~~-L~s~A~~a~~~A~~v~~~ae~V~eaL~~Ad~Aq~~a~~ai~~a~~~~~~a~~ 1598 (1758)
T KOG0994|consen 1520 IQERVASLPNVDAILSRTKGDIARAEN-LQSEAERARSRAEDVKGQAEDVVEALEEADVAQGEAQDAIQGADRDIRLAQQ 1598 (1758)
T ss_pred             HHHHHHhcccHHHHHHhhhhhHHHHHH-HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence            333345555555555554443333332 334445555544444332    334666666666666666666666665555


Q ss_pred             HhhhhHHHHHHHH-------HHHHHhHHhHHHHHHHH--hhhhhHHHHHHHHHhHHHHhhhhhhHHHHHHHHhhhHHHHH
Q 001447          298 SLLKREEAVIERE-------ASLQKKEQKLLVSQETL--ASKESNEIQKIIANHESALRVKQSEFEAELAIKYKLAEDEI  368 (1075)
Q Consensus       298 ~l~~rEee~~~~~-------~~Le~KEkELl~leEKL--~aRE~~EIQKLldeh~a~L~~Kk~eFElElE~krKs~eeEl  368 (1075)
                      .|+.-.+++...+       ..|...|.-+..|.-|.  ++++-..|+++.+--...--.-++.|+ .|....+.++.=+
T Consensus      1599 ~l~kv~~~t~~aE~~~~~a~q~~~eL~~~~e~lk~~~~qns~~A~~a~~~a~sa~~~A~~a~q~~~-~lq~~~~~~~~l~ 1677 (1758)
T KOG0994|consen 1599 LLAKVQEETAAAEKLATSATQQLGELETRMEELKHKAAQNSAEAKQAEKTAGSAKEQALSAEQGLE-ILQKYYELVDRLL 1677 (1758)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence            5555444443333       44444454444444443  356677888887765554444555666 6776666666666


Q ss_pred             HHHHHHHHhhhhhhhhhHHHHHhh----hhhHHHhHHHHHHhhhhHHHHhhhhHHHHhhhHHHHHHh
Q 001447          369 EKKRRAWELRDLDLGQREESLLER----EHDLEVQSRALVDKEKDLVERSHLLEEKENKLIAFEKEA  431 (1075)
Q Consensus       369 e~K~~~~E~rEvel~h~Eekl~kR----EqaLe~k~~~lkEKEkdl~~Ksk~LKEkEksL~aeEK~l  431 (1075)
                      +.|.....    .-..+=++|..|    -.+-+.++..|++.|-.+..+..+|.-+...|--.++++
T Consensus      1678 ~~r~~g~~----~ar~rAe~L~~eA~~Ll~~a~~kl~~l~dLe~~y~~~~~~L~~~~aeL~~Le~r~ 1740 (1758)
T KOG0994|consen 1678 EKRMEGSQ----AARERAEQLRTEAEKLLGQANEKLDRLKDLELEYLRNEQALEDKAAELAGLEKRV 1740 (1758)
T ss_pred             HHHhhcch----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHH
Confidence            55543221    111112222222    123345566666666666665555555555555555544

>TIGR01005 eps_transp_fam exopolysaccharide transport protein family

Probab=80.51  E-value=1.4e+02  Score=37.14  Aligned_cols=72  Identities=11%  Similarity=0.041  Sum_probs=38.1

Q ss_pred             hhhhhhhHHHHHHHHHhhhhHHHHHhhhhhhHHHHHHhcchhHHh--------hhhHHHhhhhhHHHHHHhHhhhhhhhH
Q 001447          147 AADSKFAEARCMVENAQKKFAEAEAKLHAAESLQAEANRYHRSAE--------RKLQEVVAREDDLSRRIASFKADCEEK  218 (1075)
Q Consensus       147 tsesKLaEA~aLv~~~eeKslEvE~KL~aAea~~AEa~Rk~s~ae--------RkL~eVEaRE~~LrRerlSf~~E~ea~  218 (1075)
                      ..+.|...+..-..-+.+...++..+|.+|++.++.--+++....        .+|.++..+-...+-++....+-....
T Consensus       184 ~~~~k~~~~~~a~~~L~~ql~~l~~~l~~aE~~l~~fk~~~~l~~~~~~~~~~~~L~~l~~ql~~a~~~~~~a~a~~~~l  263 (754)
T TIGR01005       184 QGAAKSESNTAAADFLAPEIADLSKQSRDAEAEVAAYRAQSDLLMGNNATLATQQLAELNTELSRARANRAAAEGTADSV  263 (754)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344555555555666666677777777777776666555443322        344444444444444444444333333

The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	1075
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-19
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-09
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-09
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-06
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	2e-16
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	5e-15
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	2e-14
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	6e-14
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	1e-13
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	1e-09
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	1e-09
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	1e-13
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	8e-11
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	6e-09
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	7e-09
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	2e-05
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	6e-05
2ycu_A	995	Non muscle myosin 2C, alpha-actinin; motor protein	3e-07
2ycu_A	995	Non muscle myosin 2C, alpha-actinin; motor protein	6e-05
1g8x_A	1010	Myosin II heavy chain fused to alpha-actinin 3; mo	2e-06
1g8x_A	1010	Myosin II heavy chain fused to alpha-actinin 3; mo	2e-06
1g8x_A	1010	Myosin II heavy chain fused to alpha-actinin 3; mo	4e-05
3vkg_A	3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	8e-05
3vkg_A	3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	2e-04
1sjj_A	863	Actinin; 3-helix bundle, calponin homology domain,	5e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 92.6 bits (229), Expect = 4e-19
 Identities = 106/644 (16%), Positives = 214/644 (33%), Gaps = 164/644 (25%)

Query: 184 NRYHRSAERKLQEVVAREDDLSRRIASFKADCEEKEREIIRERQSLSDR--KKILQQEHE 241
           + +H   E    +   + D LS    +F  + + K+ + +  +  LS      I+  +  
Sbjct: 3   HHHHMDFETGEHQYQYK-DILSVFEDAFVDNFDCKDVQDM-PKSILSKEEIDHIIMSKDA 60

Query: 242 -----RLLDAQTLLNEREDHILSKLQELSRKEKELEASRANVEEKFKALN-----EEKSN 291
                RL    TLL+++E+ +   ++E+ R   +   S    E++  ++      E++  
Sbjct: 61  VSGTLRLFW--TLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDR 118

Query: 292 LDLTLVSLLK----REEAVIEREASLQ--KKEQKLLV------SQETLASK--ESNEIQK 337
           L        K    R +  ++   +L   +  + +L+       +  +A     S ++Q 
Sbjct: 119 LYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQC 178

Query: 338 IIANH------------ESALRVKQ-----------SEFEAELAIKYKLAEDEIEKKRRA 374
            +               E+ L + Q           S  +    IK ++      + RR 
Sbjct: 179 KMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRI-HSIQAELRRL 237

Query: 375 WELRDLDLGQREESLL------EREH--DLEVQSRALV---DK------------EKDLV 411
            + +       E  LL        +      +  + L+    K               L 
Sbjct: 238 LKSKPY-----ENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLD 292

Query: 412 ERSHLLEEKENKLIAFEKEADLKKSLLQKEKEEVN-----IIKSDLQKSLSSLDEKKKQV 466
             S  L   E K +   K  D +   L +E    N     II   ++  L++ D  K  V
Sbjct: 293 HHSMTLTPDEVKSL-LLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWK-HV 350

Query: 467 NCAKDKL-EAMKSEAGELSVLEIK-LKEEL-----DV-VRAQKLELMVETDKLQLEKAKF 518
           NC  DKL   ++S    L   E + + + L        +    L L+             
Sbjct: 351 NC--DKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLI------------- 395

Query: 519 EAEW-EMIDEKREELRKEAERVAVERVVVSKSL--KDERDS----------LRQERDAMR 565
              W ++I         +   V  +  +   SL  K  ++S          L+ + +   
Sbjct: 396 ---WFDVIKS-------DVMVVVNK--LHKYSLVEKQPKESTISIPSIYLELKVKLENEY 443

Query: 566 DQHKRDVDSLNREREEFMNKMVHEHSE--WFTKIQQERADFLLGIEMQKRDLENCIEKRR 623
             H+  VD  N  +    + ++  + +  +++ I       L  IE  +R          
Sbjct: 444 ALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHI----GHHLKNIEHPERMTL------F 493

Query: 624 EELESSFREREKAFEEEKMREFQQISSLKEKAEKELEQVTLEIKRLDLERMEINMDRQRR 683
             +   FR     F E+K+R      S    A   +      +++L   +  I  +  + 
Sbjct: 494 RMVFLDFR-----FLEQKIRH----DSTAWNASGSILNT---LQQLKFYKPYICDNDPKY 541

Query: 684 DREWAELNN---SIEELMVQRQKLEEQRQLLHADREEIQAESER 724
           +R    + +    IEE ++  +  +  R  L A+ E I  E+ +
Sbjct: 542 ERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAIFEEAHK 585

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 61.0 bits (147), Expect = 2e-09
 Identities = 65/415 (15%), Positives = 127/415 (30%), Gaps = 117/415 (28%)

Query: 18  LQSPLSDESIWKRLKEA--GLDEVSIKR---------------RDKAALIAYIAKLETEI 60
           +Q+ L      K  +     L  V   +               R K       A   T I
Sbjct: 230 IQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHI 289

Query: 61  FEHQHHMGLLILEKKELASKYEQIKASAEAAELLQKHDRASHLSAIAEARK--------- 111
               H M L   E K L  KY   +      E+L  + R   LS IAE+ +         
Sbjct: 290 SLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRR--LSIIAESIRDGLATWDNW 347

Query: 112 REESLKKTLGVEKECIASLEKAVHEIRA---------ESA--ETKVAA----DSKFAEAR 156
           +  +  K   + +  +  LE A  E R           SA   T + +    D   ++  
Sbjct: 348 KHVNCDKLTTIIESSLNVLEPA--EYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVM 405

Query: 157 CMVENAQKKFAEAEAKLHAAESLQAEANRYHRSAERKLQEVVAREDDLSRRIASFKADCE 216
            +V    K             SL           E++ +E       +   +        
Sbjct: 406 VVVNKLHKY------------SL----------VEKQPKESTISIPSIYLEL-------- 435

Query: 217 EKEREIIRERQSLSDRKKILQQ-EHERLLDAQTLLNERED-----HI---LSKLQELSRK 267
              +  +    +L   + I+      +  D+  L+    D     HI   L  + E   +
Sbjct: 436 ---KVKLENEYAL--HRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNI-EHPER 489

Query: 268 EKELEASRAN---VEEKFK----ALNEEKSNLDLTLVSLLKREEAVIEREASLQKKEQKL 320
                    +   +E+K +    A N   S L+ TL  L   +  + + +   ++    +
Sbjct: 490 MTLFRMVFLDFRFLEQKIRHDSTAWNASGSILN-TLQQLKFYKPYICDNDPKYERLVNAI 548

Query: 321 L-----VSQETLASKESNEIQKIIANHESALRVKQSEFEAELAIKYKLAEDEIEK 370
           L     + +  + SK ++ ++  +   + A+              ++ A  ++++
Sbjct: 549 LDFLPKIEENLICSKYTDLLRIALMAEDEAI--------------FEEAHKQVQR 589

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 59.5 bits (143), Expect = 5e-09
 Identities = 92/629 (14%), Positives = 185/629 (29%), Gaps = 173/629 (27%)

Query: 567  QHKRDVDSLNREREEFMNKMVHEHSEWFTKIQ--QERADFLLGIEMQKRDLENCIEKRRE 624
             H   +D    E +     ++    + F      ++  D    I + K ++++ I  +  
Sbjct: 2    HHHHHMDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSI-LSKEEIDHIIMSKDA 60

Query: 625  E---------LESSFREREKAFEEEKMR---EFQQISSLKEKAEKELEQVTLEIKRLDLE 672
                      L S   E  + F EE +R   +F     L    + E  Q ++  +    +
Sbjct: 61   VSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKF-----LMSPIKTEQRQPSMMTRMYIEQ 115

Query: 673  RMEINMDRQRRD-REWAELNNSIEELMVQ-RQKLEEQRQ----LLH-------------- 712
            R     DR   D + +A+ N S  +  ++ RQ L E R     L+               
Sbjct: 116  R-----DRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDV 170

Query: 713  ADREEIQA----------------ESERLKKLEDL--KIAVDYMAVSE-MQRSRLEHSQK 753
                ++Q                     L+ L+ L  +I  ++ + S+     +L     
Sbjct: 171  CLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSI 230

Query: 754  KISAKRHLNQQTSLAHADLGSDQKFDVTNNG--DRFNTPSVQ-KTASASPPSLARFSWIK 810
            + +  R L +     +  L      +V N    + FN   +  K        L       
Sbjct: 231  Q-AELRRLLKSKPYENCLLVLL---NVQNAKAWNAFN---LSCKI-------LL----TT 272

Query: 811  RFADLVFKHSGENSVENDEEKSPTSDHEDASLT-----------INSRKRQ-PVRYSFGE 858
            RF  +       + +        + DH   +LT           ++ R +  P       
Sbjct: 273  RFKQVT------DFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTN 326

Query: 859  PKVI-------------------LEVPSENEVVKRTVD-LESENNQNAAQKCKQSVSEDG 898
            P+ +                   +       +++ +++ LE    +    +   SV    
Sbjct: 327  PRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRL--SVFPPS 384

Query: 899  IHAARK--------------RRVDVDCVDPSELLMQNNKRRK-----QQEDFPRNSSEEA 939
             H                    V       S L+ +  K           +       E 
Sbjct: 385  AHIPTILLSLIWFDVIKSDVMVVVNKLHKYS-LVEKQPKESTISIPSIYLELKVKLENEY 443

Query: 940  INHGAVAEQSNLPE--DQHTLTSKNKSN-----VPEGLHTLTSNNHTQGGNEEASILIVD 992
              H ++ +  N+P+  D   L            +  G H L +  H +       ++ +D
Sbjct: 444  ALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHI--GHH-LKNIEHPE-RMTLFRMVFLD 499

Query: 993  ------KIIKISEVTCEMTDADNFINQEKI--------DGSQNSVAESVQDIVKVGGTND 1038
                  KI   S          N + Q K         D     +  ++ D +     N 
Sbjct: 500  FRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENL 559

Query: 1039 HSTPAHTDDVVLPYISEIDGMVQE--KQM 1065
              +  +TD + +  ++E + + +E  KQ+
Sbjct: 560  ICSK-YTDLLRIALMAEDEAIFEEAHKQV 587

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 49.5 bits (117), Expect = 7e-06
 Identities = 65/473 (13%), Positives = 148/473 (31%), Gaps = 119/473 (25%)

Query: 25  ESIWKRLKEAGLDEVSIKRRDKAALIAYIAKLETEIFEHQHHMGLLIL---EKKELASKY 81
           + +  ++              K  + +  A+L   +    +   LL+L   +  +  + +
Sbjct: 203 QKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAF 262

Query: 82  E---QIKASAEAAELLQKHDR--ASHLSAIAEARKREESLKKTLGVEKECIASLEKAVHE 136
               +I        LL    +     LSA        +    TL    E  + L K + +
Sbjct: 263 NLSCKI--------LLTTRFKQVTDFLSAATTTHISLDHHSMTLT-PDEVKSLLLKYL-D 312

Query: 137 IRAESAETKVAADSKFAEARCMVENAQKKFAEAEAKLHAAESLQAEANRYHRSAERKLQE 196
            R +    +V   +    +  ++                AES++     +     + +  
Sbjct: 313 CRPQDLPREVLTTNPRRLS--II----------------AESIRDGLATWDNW--KHVN- 351

Query: 197 VVAREDDLSRRIASFKADCEEKEREIIRER-QSLSDRKKILQQEHERLLDAQTLLNERED 255
                D L+  I S     E  E    R+    LS    +                    
Sbjct: 352 ----CDKLTTIIESSLNVLEPAE---YRKMFDRLS----VF----------------PPS 384

Query: 256 -HI----LSKL-QELSRKEKELEASRANVEEKFKALNEEKSNLDLTLVSLLKREEAVIER 309
            HI    LS +  ++ + +  +  ++     K+  + ++     +++ S+    +  +E 
Sbjct: 385 AHIPTILLSLIWFDVIKSDVMVVVNKL---HKYSLVEKQPKESTISIPSIYLELKVKLEN 441

Query: 310 EASLQKKEQKLLVSQETLASKESNEIQKI---------IANHESALRVKQSEFEAELAIK 360
           E +L +    ++       + +S+++            I +H   +     E      + 
Sbjct: 442 EYALHR---SIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIE--HPERMTLFRMV 496

Query: 361 YKLAEDEIEKKRR----AWELRDLDLGQREESLLEREHDLEVQSRALVDKEKDLVERSHL 416
           + L    +E+K R    AW            S+L     L+     + D +         
Sbjct: 497 F-LDFRFLEQKIRHDSTAWNASG--------SILNTLQQLKFYKPYICDNDPK------- 540

Query: 417 LEEKENKLIAF--EKEADLKKSLLQKEKEEVNIIKSDLQKSLSSL-DEKKKQV 466
            E   N ++ F  + E +L  S      +  ++++  L     ++ +E  KQV
Sbjct: 541 YERLVNAILDFLPKIEENLICS------KYTDLLRIALMAEDEAIFEEAHKQV 587

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 83.7 bits (207), Expect = 2e-16
 Identities = 58/352 (16%), Positives = 137/352 (38%), Gaps = 19/352 (5%)

Query: 296  LVSLLKREEAVIEREASLQKKEQKLLVSQETLASKESNEIQKIIANHESALRVKQSEFEA 355
            L+ + ++EE +  ++  LQ+ +++   ++  L      E+++          + Q + +A
Sbjct: 849  LLKVTRQEEEMQAKDEELQRTKERQQKAEAELK-----ELEQKHTQLCEEKNLLQEKLQA 903

Query: 356  ELAIKYKLAEDEIEKKRRAWELRDLDLGQREESLLEREHDLEVQSRALVDKEKDLVERSH 415
            E  +       E E+ R     +  +L +    +  R  + E +S+ L  ++K + ++  
Sbjct: 904  ETELY-----AEAEEMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQ-- 956

Query: 416  LLEEKENKLIAFEKEADLKKSLLQKEKEEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEA 475
             + + E +L    +E +  +  LQ EK   +     ++  +  ++++  ++   +  LE 
Sbjct: 957  -MLDLEEQL----EEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEE 1011

Query: 476  MKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKE 535
              S+       E +  + L  ++ +   ++ E +    ++ K   E E I  K E    +
Sbjct: 1012 RVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSD 1071

Query: 536  AERVAVERVVVSKSLKDERDSLRQERDAMRDQHKRDVDSLNREREEFMNKMVHEHSEWFT 595
                  E       LK +     +E  A   + + +    N   ++ + ++    S+   
Sbjct: 1072 LHEQIAELQAQIAELKAQLAKKEEELQAALARLEDETSQKNNALKK-IRELESHISDLQE 1130

Query: 596  KIQQERADFLLGIEMQKRDLENCIEKRREELESSFREREKAFEEEKMREFQQ 647
             ++ E+A      E QKRDL   +E  + ELE +        E         
Sbjct: 1131 DLESEKAA-RNKAEKQKRDLSEELEALKTELEDTLDTTATQQELRGSDYKDD 1181

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 79.1 bits (195), Expect = 5e-15
 Identities = 72/412 (17%), Positives = 157/412 (38%), Gaps = 54/412 (13%)

Query: 162  AQKKFAEAEAKLHAAESLQAEANRYHRSAERK----------LQEVVAREDDLSRRIASF 211
            A+K FA+ + +L +   +Q     +                 L +V  +E+++  +    
Sbjct: 807  ARKAFAKRQQQLESIFCIQYNVRSFMNVXHWPWMXLFFXIXPLLKVTRQEEEMQAKDEEL 866

Query: 212  KADCEEKER------EIIRERQSLSDRKKILQQEHERLLDAQTLLNEREDHILSKLQELS 265
            +   E +++      E+ ++   L + K +LQ++ +   +      E    + +K QEL 
Sbjct: 867  QRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEEMRVRLAAKKQELE 926

Query: 266  RKEKELEASRANVEEKFKALNEEKSNLDLTLVSLLKR----EEAVIEREASLQKKEQKLL 321
                E+EA     EE+ + L  EK  +   ++ L ++    E A  + +      + K+ 
Sbjct: 927  EILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIK 986

Query: 322  VSQETLASKESNEIQKIIANHESALRVKQSEFEAELAIKYKLAEDEIEKKRRAWELRDLD 381
              ++ +   E ++  K+       L  + S+    LA + + A+  + K +   E    +
Sbjct: 987  KMEDDILIME-DQNNKLTK-ERKLLEERVSDLTTNLAEEEEKAK-NLTKLKNKHESMISE 1043

Query: 382  LGQREESLLEREHDLEVQSRALVDKEKDLVERSHLLEEKENKLIAFEKEADLKKSLLQKE 441
            L  R +   +   +LE   R L  +  DL E+   L+ +  +L          K+ L K+
Sbjct: 1044 LEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAEL----------KAQLAKK 1093

Query: 442  KEEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEAMKSEAGELSVLEIKLKEELDVVRAQK 501
            +EE+    + L+   S  +   K++   +  +                L+E+L+  +A +
Sbjct: 1094 EEELQAALARLEDETSQKNNALKKIRELESHIS--------------DLQEDLESEKAAR 1139

Query: 502  LELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVERVVVSKSLKDE 553
                   +K + +K     E E +  + E+           R    K   D+
Sbjct: 1140 -------NKAEKQKRDLSEELEALKTELEDTLDTTATQQELRGSDYKDDDDK 1184

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 77.6 bits (191), Expect = 2e-14
 Identities = 62/361 (17%), Positives = 141/361 (39%), Gaps = 41/361 (11%)

Query: 406  KEKDLVERSHLLEEKENKLIAFEKEADLKKSLLQKEKEEVNIIKSDLQKSLSSLDEKKKQ 465
            +E+++  +   L+  + +    E E    +    +  EE N+++  LQ       E ++ 
Sbjct: 855  QEEEMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEEM 914

Query: 466  VNCAKDKLEAMKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMI 525
                  K + ++    E+   E +++EE +            + +LQ EK K + +   +
Sbjct: 915  RVRLAAKKQELEEILHEM---EARIEEEEE-----------RSQQLQAEKKKMQQQMLDL 960

Query: 526  DEKREELRKEAERVAVERVVVSKSLKDERDSLRQERDAMRDQHKRDVDSLNREREEFMNK 585
            +E+ EE     +++ +E+V     +K   D +    D          + L +ER+     
Sbjct: 961  EEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMED--------QNNKLTKERKL---- 1008

Query: 586  MVHEHSEWFTKIQQERADFLLGIEMQKRDLENCIEKRREELESSFREREKAFEEEKMREF 645
                         +ER   L     ++ +    + K + + ES   E E   ++E+ +  
Sbjct: 1009 ------------LEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEE-KSR 1055

Query: 646  QQISSLKEKAEKELEQVTLEIKRLDLERMEINMDRQRRDREWAELNNSIEELMVQRQKLE 705
            Q++  +K K E E   +  +I  L  +  E+     +++ E       +E+   Q+    
Sbjct: 1056 QELEKIKRKLEGESSDLHEQIAELQAQIAELKAQLAKKEEELQAALARLEDETSQKNNAL 1115

Query: 706  EQRQLLHADREEIQA--ESERLKKLEDLKIAVDYMAVSEMQRSRLEHSQKKISAKRHLNQ 763
            ++ + L +   ++Q   ESE+  + +  K   D     E  ++ LE +    + ++ L  
Sbjct: 1116 KKIRELESHISDLQEDLESEKAARNKAEKQKRDLSEELEALKTELEDTLDTTATQQELRG 1175

Query: 764  Q 764
             
Sbjct: 1176 S 1176

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 75.6 bits (186), Expect = 6e-14
 Identities = 60/372 (16%), Positives = 149/372 (40%), Gaps = 38/372 (10%)

Query: 347  RVKQSEFEAELAIKYKLAEDEIEKKRRAWELRDLDLGQREESLLEREHDLEVQSRALVDK 406
             +K +  E E+  K +  +   E++++A      +L Q+   L E ++ L+ + +A  + 
Sbjct: 849  LLKVTRQEEEMQAKDEELQRTKERQQKAEAELK-ELEQKHTQLCEEKNLLQEKLQAETEL 907

Query: 407  EKDLVERSHLLEEKENKLIAFEKEADLKKSLLQKEKEEVNIIKSDLQKSLSSLDEKKKQV 466
              +  E    L  K+ +L     E + +    ++  +++   K  +Q+ +  L   ++Q+
Sbjct: 908  YAEAEEMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDL---EEQL 964

Query: 467  NCAKDKLEAMKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMID 526
               +   + ++ E         K+++++ ++  Q  +L  E   L+   +         +
Sbjct: 965  EEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEE 1024

Query: 527  EKREELRKEAERVAVERVVVSKSLKDERDSLRQERDAMRDQHKRDVDSLNREREEFMNKM 586
            EK + L K   +           + +    L++E      + +++++ + R+ E   + +
Sbjct: 1025 EKAKNLTKLKNKH-------ESMISELEVRLKKEE-----KSRQELEKIKRKLEGESSDL 1072

Query: 587  VHEHSEWFTKIQQERADFLLGIEMQKRDLENCIEKRREELESSFREREKAFEEEKMREFQ 646
              + +E   +I + +A      ++ K++ E      R E E+S +        +K+RE +
Sbjct: 1073 HEQIAELQAQIAELKA------QLAKKEEELQAALARLEDETSQKNNA----LKKIRELE 1122

Query: 647  -QISSLKEKAEKELEQVTLEIKRLDLERMEINMDRQRRDREWAELNNSIEELMVQRQKLE 705
              IS L+E  E E              R +    ++    E   L   +E+ +      +
Sbjct: 1123 SHISDLQEDLESE-----------KAARNKAEKQKRDLSEELEALKTELEDTLDTTATQQ 1171

Query: 706  EQRQLLHADREE 717
            E R   + D ++
Sbjct: 1172 ELRGSDYKDDDD 1183

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 74.5 bits (183), Expect = 1e-13
 Identities = 67/360 (18%), Positives = 137/360 (38%), Gaps = 13/360 (3%)

Query: 63   HQHHMGLLILEKKELASKYEQIKASAEAAELLQKHDRASHLSAIAEARKREESLKKTLGV 122
            H   M L       L    ++ +  A+  EL +  +R           K  E     L  
Sbjct: 836  HWPWMXLFFXIXPLLKVTRQEEEMQAKDEELQRTKER---QQKAEAELKELEQKHTQLCE 892

Query: 123  EKECIASLEKAVHEIRAESAETKVAADSKFAEARCMVENAQKKFAEAEAKLHAAESLQAE 182
            EK  +    +A  E+ AE+ E +V   +K  E   ++   + +  E E +    ++ + +
Sbjct: 893  EKNLLQEKLQAETELYAEAEEMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKK 952

Query: 183  ANRYHRSAERKLQEVVAREDDLSRRIASFKADCEEKEREIIRERQSLSDRKKILQQEHER 242
              +     E +L+E  A    L     +     ++ E +I+      +   K  +   ER
Sbjct: 953  MQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEER 1012

Query: 243  LLDAQTLLNEREDHILSKLQELSRKEKELEASRANVEEKFKALNEEKSNLDLTLVSLLKR 302
            + D  T L E E+    K + L++ + + E+  + +E + K   + +  L+     L   
Sbjct: 1013 VSDLTTNLAEEEE----KAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGE 1068

Query: 303  EEAVIEREASLQKKEQKLLVSQETLASKESNEIQKIIA--NHESALRVKQSEFEAELAIK 360
               + E+ A LQ +  +L   +  LA KE  E+Q  +A    E++ +    +   EL   
Sbjct: 1069 SSDLHEQIAELQAQIAEL---KAQLAKKEE-ELQAALARLEDETSQKNNALKKIRELESH 1124

Query: 361  YKLAEDEIEKKRRAWELRDLDLGQREESLLEREHDLEVQSRALVDKEKDLVERSHLLEEK 420
                ++++E ++ A    +       E L   + +LE        +++         ++K
Sbjct: 1125 ISDLQEDLESEKAARNKAEKQKRDLSEELEALKTELEDTLDTTATQQELRGSDYKDDDDK 1184

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 61.8 bits (150), Expect = 1e-09
 Identities = 57/298 (19%), Positives = 118/298 (39%), Gaps = 35/298 (11%)

Query: 488  IKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVERVVVS 547
             + KE      A+  EL  +  +L  EK   + + +   E   E  +   R+A ++  + 
Sbjct: 867  QRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEEMRVRLAAKKQELE 926

Query: 548  KSLKDERDSLRQERDAMRDQHKRDVDSLNREREEFMNKMVHEHSEWFTKIQQERADFLLG 607
            + L +    + +E +             +++ +    KM  +  +   ++++E A     
Sbjct: 927  EILHEMEARIEEEEER------------SQQLQAEKKKMQQQMLDLEEQLEEEEAA-RQK 973

Query: 608  IEMQKRDLENCIEKRREELESSFREREKAFEEEKMREFQQISSLKE---KAEKELEQVTL 664
            ++++K   +  I+K  +++     +  K  +E K         L+E        L +   
Sbjct: 974  LQLEKVTADGKIKKMEDDILIMEDQNNKLTKERK--------LLEERVSDLTTNLAEEEE 1025

Query: 665  EIKRLDLERMEINMDRQRRDREWAELNNSIEELMVQRQKLEEQRQLLHADREEIQAESER 724
            + K L   + +        +    +   S +EL   ++KLE +   LH    E+QA+   
Sbjct: 1026 KAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAE 1085

Query: 725  L-----KKLEDLKIAVDYMAVSEMQRSRLEHSQKKISAKRHLNQQTSLAHADLGSDQK 777
            L     KK E+L+ A+  +   E + S+  ++ KKI   R L    S    DL S++ 
Sbjct: 1086 LKAQLAKKEEELQAALARL---EDETSQKNNALKKI---RELESHISDLQEDLESEKA 1137

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 61.4 bits (149), Expect = 1e-09
 Identities = 33/262 (12%), Positives = 108/262 (41%), Gaps = 16/262 (6%)

Query: 498  RAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVERVVVSKSLKDERDSL 557
                +  +++  + + E    + E +   E++++   E + +  +   + +     ++ L
Sbjct: 842  LFFXIXPLLKVTRQEEEMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKL 901

Query: 558  RQERDAMRDQHKRDVDSLNREREEFMNKMVHEHSEWFTKIQQERADFLLGIEMQKRDLEN 617
            + E +   +  +  V    +++E  + +++HE      + ++        ++ +K+ ++ 
Sbjct: 902  QAETELYAEAEEMRVRLAAKKQE--LEEILHEMEARIEEEEERSQQ----LQAEKKKMQQ 955

Query: 618  CI---EKRREELESSFR--EREKAFEEEKMREFQQISSLKEKAEKELEQVTLEIKRLDLE 672
             +   E++ EE E++ +  + EK   + K+++ +    + E    +L +   E K L+  
Sbjct: 956  QMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTK---ERKLLEER 1012

Query: 673  RMEINMDRQRRDREWAELNNSIEELMVQRQKLEEQRQLLHADREEIQAESERLKKLEDLK 732
              ++  +    + +   L     +      +LE + +     R+E++    +L+   +  
Sbjct: 1013 VSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLE--GESS 1070

Query: 733  IAVDYMAVSEMQRSRLEHSQKK 754
               + +A  + Q + L+    K
Sbjct: 1071 DLHEQIAELQAQIAELKAQLAK 1092

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 74.4 bits (183), Expect = 1e-13
 Identities = 44/300 (14%), Positives = 107/300 (35%), Gaps = 24/300 (8%)

Query: 77   LASKYEQIKASAEAAELLQKHDRASHLSAIAEARKREESLKKTLGVEKECIASLEKAVHE 136
             A  Y        AA ++QK  R          RKR + ++      +  +         
Sbjct: 805  QARCYATFLRRTRAAIIIQKFQRM------YVVRKRYQCMRDATIALQALLRGYLV---- 854

Query: 137  IRAESAETKVAADSKFAEARCMVENAQKKFAEAEAKLHAAESLQAEANRYHRSAERKLQE 196
             R +         S   +       A+  +      L A   LQ    R    A+R+L++
Sbjct: 855  -RNKYQMMLREHKSIIIQKHVRGWLARVHYHR---TLKAIVYLQCCYRR--MMAKRELKK 908

Query: 197  VVAREDDLSRRIASFKADCEEKEREIIRERQSLSDRKKILQQEHERLLDAQTLLNEREDH 256
            +        R +  +K      E +I++ ++ + ++ K  +   E++ + +   +   + 
Sbjct: 909  LKIEA----RSVERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEK 964

Query: 257  ILSKLQELSRKEKELEASRANVEEKFKALNEEKSNLDLTLVSLLKREEAVIEREASLQKK 316
            + S ++ L   E+E + +      +  +L EE + L   L      ++ + E     + +
Sbjct: 965  LRSDVERLRMSEEEAKNA----TNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHE 1020

Query: 317  EQKLLVSQETLASKESNEIQKIIANHESALRVKQSEFEAELAIKYKLAEDEIEKKRRAWE 376
             ++L+   +   +    E +++        +      E +L  + K  E ++  +R  ++
Sbjct: 1021 TEQLVSELKEQNTLLKTEKEELNRRIHDQAKEITETMEKKLVEETKQLELDLNDERLRYQ 1080

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 65.5 bits (160), Expect = 8e-11
 Identities = 50/317 (15%), Positives = 108/317 (34%), Gaps = 41/317 (12%)

Query: 300  LKREEAVIEREASLQKKEQKLLVSQETLASKESNEIQKIIANHESALRVKQSEFEAELAI 359
              R  A   R        QK       +  K    ++      ++ LR      + ++ +
Sbjct: 805  QARCYATFLRRTRAAIIIQKFQRMY--VVRKRYQCMRDATIALQALLRGYLVRNKYQMML 862

Query: 360  KYKLAEDEIEKKRRAWELRDLDLGQREESLLEREHDLEVQSRALVDKEKDLVERSHLLEE 419
            +       I+K  R W  R       +  +  +     + ++  + K K         ++
Sbjct: 863  REH-KSIIIQKHVRGWLARVHYHRTLKAIVYLQCCYRRMMAKRELKKLKIEARSVERYKK 921

Query: 420  KENKLIAFEKEADLKKSLLQKEKEEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEAMKSE 479
                L    K   L++ + ++ KE        L + +++L+          +KL +    
Sbjct: 922  LHIGLEN--KIMQLQRKIDEQNKE-----YKSLLEKMNNLEITYST---ETEKLRSDVER 971

Query: 480  AGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERV 539
                       +EE      + L L  E  KL+ E  + + E + I+E  ++ + E E++
Sbjct: 972  L-------RMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQL 1024

Query: 540  AVERVVVSKSLKDERDSLRQERDAMRDQHKRDVDSLNREREEFMNKMVHEHSEWFTKIQQ 599
              E       LK++   L+ E++ +     R +    +E  E M K          K+ +
Sbjct: 1025 VSE-------LKEQNTLLKTEKEEL----NRRIHDQAKEITETMEK----------KLVE 1063

Query: 600  ERADFLLGIEMQKRDLE 616
            E     L +  ++   +
Sbjct: 1064 ETKQLELDLNDERLRYQ 1080

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 59.4 bits (144), Expect = 6e-09
 Identities = 29/250 (11%), Positives = 84/250 (33%), Gaps = 16/250 (6%)

Query: 486  LEIKLKEELDVVRAQKLELMVETDKLQLEKA--KFEAEWEMIDEKREELRKEAERVAVER 543
              ++          +   +  +   +  E      +        +    R     V ++ 
Sbjct: 836  QCMRDATIALQALLRGYLVRNKYQMMLREHKSIIIQKHVRGWLARVHYHRTLKAIVYLQC 895

Query: 544  VVVSKSLKDERDSLRQERDAMRDQHKRDVDSLNREREEFMNKMVHEHSEWFTKIQQERAD 603
                   K E   L+ E  ++ +++K+    L  +  +   K+  ++ E+ + +++    
Sbjct: 896  CYRRMMAKRELKKLKIEARSV-ERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNN- 953

Query: 604  FLLGIEMQKRDLENCIEKRREELESSFREREKAFE-----EEKMREFQQISSLKEKAEKE 658
                +E+        +    E L  S  E + A       +E++ + ++     +  +K 
Sbjct: 954  ----LEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKT 1009

Query: 659  LEQVTLEIK-RLDLERMEINMDRQRRDREWAELNNSIEELMVQRQKLEEQRQLLHADREE 717
            +E+   + K   +    E+         E  ELN  I +    ++  E   + L  + ++
Sbjct: 1010 IEEWADKYKHETEQLVSELKEQNTLLKTEKEELNRRIHDQ--AKEITETMEKKLVEETKQ 1067

Query: 718  IQAESERLKK 727
            ++ +    + 
Sbjct: 1068 LELDLNDERL 1077

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 59.4 bits (144), Expect = 7e-09
 Identities = 46/318 (14%), Positives = 96/318 (30%), Gaps = 10/318 (3%)

Query: 89   EAAELLQKHDRASHLSAIAEARKREESLKK-TLGVEKECIASLE-KAVHEIRAESAETKV 146
             A   +QK  R          RK+   +++  + +++             +R   A   +
Sbjct: 769  AACIRIQKTIRGWL------MRKKYMRMRRAAITIQRYVRGHQARCYATFLRRTRAAIII 822

Query: 147  AADSKFAEARCMVENAQKKFAEAEAKLHAAESLQAEANRYHRSAERKLQEVVAREDDLSR 206
                +    R   +  +      +A L                    +Q+ V        
Sbjct: 823  QKFQRMYVVRKRYQCMRDATIALQALLRGYLVRNKYQMMLREHKSIIIQKHVRGWLARVH 882

Query: 207  RIASFKADCEEKEREIIRERQSLSDRKKILQQEHERLLDAQTLLNEREDHILSKLQELSR 266
               + KA    +        +    + KI  +  ER       L  +   +  K+ E ++
Sbjct: 883  YHRTLKAIVYLQCCYRRMMAKRELKKLKIEARSVERYKKLHIGLENKIMQLQRKIDEQNK 942

Query: 267  KEKELEASRANVEEKFKALNEEKSNLDLTLVSLLKREEAVIEREASLQKKEQKLLVSQET 326
            + K L     N+E  +    E+  +    L    +  +    R  SLQ +E   L  +  
Sbjct: 943  EYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQ-EEIAKLRKELH 1001

Query: 327  LASKESNEIQKIIANHESALRVKQSEFEAELA-IKYKLAEDEIEKKRRAWELRDLDLGQR 385
                E   I++    ++       SE + +   +K +  E       +A E+ +    + 
Sbjct: 1002 QTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLKTEKEELNRRIHDQAKEITETMEKKL 1061

Query: 386  EESLLEREHDLEVQSRAL 403
             E   + E DL  +    
Sbjct: 1062 VEETKQLELDLNDERLRY 1079

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 47.8 bits (114), Expect = 2e-05
 Identities = 27/215 (12%), Positives = 61/215 (28%), Gaps = 15/215 (6%)

Query: 577  REREEFMNKMVHEHSEWFTKIQQERADFLLGIEMQKRDLENCIEKRREELESSFREREKA 636
                   NK      E  + I Q+     L      R L+  +  +        +   K 
Sbjct: 849  LRGYLVRNKYQMMLREHKSIIIQKHVRGWLARVHYHRTLKAIVYLQCCYRRMMAKRELKK 908

Query: 637  FEEEKMREFQQISSLKEKAEKELEQVTLEIKRLDLERMEINMDRQRRDREWAELNNSIEE 696
             + E     +    L    E ++ Q+  +I   + E   +       +  ++     +  
Sbjct: 909  LKIEARSVERYKK-LHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRS 967

Query: 697  LMVQRQKLEEQRQLLHAD-----------REEIQAESERLKKLEDLKIAVDYM---AVSE 742
             + + +  EE+ +                R+E+       K +E+      +     VSE
Sbjct: 968  DVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSE 1027

Query: 743  MQRSRLEHSQKKISAKRHLNQQTSLAHADLGSDQK 777
            ++        +K    R ++ Q       +     
Sbjct: 1028 LKEQNTLLKTEKEELNRRIHDQAKEITETMEKKLV 1062

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 46.3 bits (110), Expect = 6e-05
 Identities = 26/191 (13%), Positives = 68/191 (35%), Gaps = 5/191 (2%)

Query: 16   RVLQSPLSDESIWKR-LKEAGLDEVSIKRRDKAALIAYIAKLETEIFEHQHHMGLLILEK 74
            R L++ +  +  ++R + +  L ++ I+ R           LE +I + Q  +     E 
Sbjct: 885  RTLKAIVYLQCCYRRMMAKRELKKLKIEARSVERYKKLHIGLENKIMQLQRKIDEQNKEY 944

Query: 75   KELASKYEQIKASAEAAELLQKHDRASHLSAIAEARKREE---SLKKTLGVEKECIASLE 131
            K L  K   ++ +        + D      +  EA+       SL++ +   ++ +   +
Sbjct: 945  KSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQ 1004

Query: 132  KAVHEIRAESAETKVAADSKFAEARCMVENAQKKFAEAEAKLHAAES-LQAEANRYHRSA 190
                 I   + + K   +   +E +      + +  E   ++H     +     +     
Sbjct: 1005 TEKKTIEEWADKYKHETEQLVSELKEQNTLLKTEKEELNRRIHDQAKEITETMEKKLVEE 1064

Query: 191  ERKLQEVVARE 201
             ++L+  +  E
Sbjct: 1065 TKQLELDLNDE 1075

>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A* Length = 995

 Score = 53.5 bits (129), Expect = 3e-07
 Identities = 27/253 (10%), Positives = 73/253 (28%), Gaps = 20/253 (7%)

Query: 493 ELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAER-VAVERVVVSKSLK 551
           +L+  RA +        +          +         E R   +   +V+  + +    
Sbjct: 749 QLEEERASEQTKSDYLKRANELVQWINDKQA-----SLESRDFGDSIESVQSFMNAHKEY 803

Query: 552 DERDSLRQERDAMRDQHKRDVDSLNREREEFMNKMVHEHSEWFTKIQQERADFLLGIEMQ 611
            + +   + ++    +         + R       V        +I    +      +  
Sbjct: 804 KKTEKPPKGQEVSELE-AIYNSLQTKLRLIKREPFVAPAGLTPNEIDSTWSALEKAEQEH 862

Query: 612 KRDLENCIEKRREELESSFREREKAFEEEKMREFQQISSLKEKAEKELEQVTLEIKRLDL 671
              L   ++++++      +      + E     + +     +    +  V  ++K L+ 
Sbjct: 863 AEALRIELKRQKKIAVLLQKYNRILKKLENWATTKSVYLGSNETGDSITAVQAKLKNLEA 922

Query: 672 ERMEINMDRQRRDREWAELNNSIEELMVQRQKLEEQRQL-------------LHADREEI 718
              E      + + +   +   + EL         +R+                  +  +
Sbjct: 923 FDGECQSLEGQSNSDLLSILAQLTELNYNGVPELTERKDTFFAQQWTGVKSSAETYKNTL 982

Query: 719 QAESERLKKLEDL 731
            AE ERL+K+EDL
Sbjct: 983 LAELERLQKIEDL 995

>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A* Length = 995

 Score = 46.2 bits (110), Expect = 6e-05
 Identities = 35/230 (15%), Positives = 77/230 (33%), Gaps = 15/230 (6%)

Query: 218 KEREIIRERQSLSDRKKILQQEHERLLDAQTLLNEREDHILSKLQELSRKEKELEASRAN 277
            +++   E +   D  + +Q       + +      +   +S+L+ +    +  +     
Sbjct: 775 NDKQASLESRDFGDSIESVQSFMNAHKEYKKTEKPPKGQEVSELEAIYNSLQT-KLRLIK 833

Query: 278 VEEKFKALNEEKSNLDLTLVSLLKREEAVIEREASLQKKEQKLLVSQETLASKESNEIQK 337
            E          + +D T  +L K E+   E      K+++K+ V  +     + N I K
Sbjct: 834 REPFVAPAGLTPNEIDSTWSALEKAEQEHAEALRIELKRQKKIAVLLQ-----KYNRILK 888

Query: 338 IIANHESALRVKQSEFEAELAIKYKLAEDEIEKKRRAWELRDLDLGQREESLLEREHDLE 397
            + N  +   V     E   +I        ++ K +  E  D +    E         + 
Sbjct: 889 KLENWATTKSVYLGSNETGDSIT------AVQAKLKNLEAFDGECQSLEGQSNSDLLSIL 942

Query: 398 VQ-SRALVDKEKDLVERSHLLEEKENKLIAFEKEADLKKSLLQKEKEEVN 446
            Q +    +   +L ER      ++      +  A+  K+ L  E E + 
Sbjct: 943 AQLTELNYNGVPELTERKDTFFAQQWT--GVKSSAETYKNTLLAELERLQ 990

>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1 Length = 1010

 Score = 51.2 bits (123), Expect = 2e-06
 Identities = 39/264 (14%), Positives = 83/264 (31%), Gaps = 16/264 (6%)

Query: 191  ERKLQEVVAREDDLSRRIASFKADCEEKEREIIRERQSLSDRKKILQQEHERLLDAQTLL 250
            E++L     +         + +      +++   E +   D  + +Q       + +   
Sbjct: 759  EQRLGSEQTK---SDYLKRANELVQWINDKQASLESRDFGDSIESVQSFMNAHKEYKKTE 815

Query: 251  NEREDHILSKLQELSRKEKELEASRANVEEKFKALNEEKSNLDLTLVSLLKREEAVIERE 310
               +   +S+L+ +    +  +      E          + +D T  +L K E+   E  
Sbjct: 816  KPPKGQEVSELEAIYNSLQT-KLRLIKREPFVAPAGLTPNEIDSTWSALEKAEQEHAEAL 874

Query: 311  ASLQKKEQKLLVSQETLASKESNEIQKIIANHESALRVKQSEFEAELAIKYKLAEDEIEK 370
                K+++K+ V  +     + N I K + N  +   V     E        +       
Sbjct: 875  RIELKRQKKIAVLLQ-----KYNRILKKLENWATTKSVYLGSNETG-DSITAVQAKLKNL 928

Query: 371  KRRAWELRDLDLGQREESLLEREHDLEVQSRALVDKEKDLVERSHLLEEKENKLIAFEKE 430
            +    E + L  GQ    LL     L        +   +L ER      ++      +  
Sbjct: 929  EAFDGECQSL-EGQSNSDLLSILAQLT---ELNYNGVPELTERKDTFFAQQWT--GVKSS 982

Query: 431  ADLKKSLLQKEKEEVNIIKSDLQK 454
            A+  K+ L  E E +  I+     
Sbjct: 983  AETYKNTLLAELERLQKIEDLHHH 1006

>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1 Length = 1010

 Score = 50.8 bits (122), Expect = 2e-06
 Identities = 34/256 (13%), Positives = 77/256 (30%), Gaps = 21/256 (8%)

Query: 530  EELRKEAERVAVERVVVSKSLKDERDSLRQERDAMRDQHKRD----VDSLNREREEFMNK 585
            EE R++       +    K   +    +  ++ ++  +   D    V S     +E+   
Sbjct: 755  EEAREQRLGSEQTKSDYLKRANELVQWINDKQASLESRDFGDSIESVQSFMNAHKEYKKT 814

Query: 586  MVHEHSEWFTKIQQERADFLLGIEMQKRDLE--------NCIEKRREELESSFREREKAF 637
                  +  ++++         + + KR+          N I+     LE + +E  +A 
Sbjct: 815  EKPPKGQEVSELEAIYNSLQTKLRLIKREPFVAPAGLTPNEIDSTWSALEKAEQEHAEAL 874

Query: 638  EEEKMREFQQISSLKE----KAEKELEQVTLEIKRLDLERMEINMDRQRRDREWAELNNS 693
              E  R+ +    L++      + E    T  +     E  +     Q + +     +  
Sbjct: 875  RIELKRQKKIAVLLQKYNRILKKLENWATTKSVYLGSNETGDSITAVQAKLKNLEAFDGE 934

Query: 694  IEEL--MVQRQKLEEQRQLLHADREEIQAESERLKKLEDLKIAVDYMAVSEMQ---RSRL 748
             + L        L    QL   +   +   +ER       +      +    +    + L
Sbjct: 935  CQSLEGQSNSDLLSILAQLTELNYNGVPELTERKDTFFAQQWTGVKSSAETYKNTLLAEL 994

Query: 749  EHSQKKISAKRHLNQQ 764
            E  QK      H +  
Sbjct: 995  ERLQKIEDLHHHHHHH 1010

>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1 Length = 1010

 Score = 46.6 bits (111), Expect = 4e-05
 Identities = 34/296 (11%), Positives = 78/296 (26%), Gaps = 38/296 (12%)

Query: 352  EFEAELAIKYKLAEDEIEKKRRAWELRDLDLGQREESLLEREHDLEVQSRALVDKEKDLV 411
              E     +    + + +  +RA EL      ++         D     ++ ++  K+  
Sbjct: 753  RIEEAREQRLGSEQTKSDYLKRANELVQWINDKQASLESRDFGDSIESVQSFMNAHKEYK 812

Query: 412  ERSHLLEEKENKLIAFEKEADLKKSLLQKEKEEVNIIKSDLQKSLSSLDEKKKQVNCAKD 471
            +     + +E   +     +   K  L K +  V        +  S+    +K      +
Sbjct: 813  KTEKPPKGQEVSELEAIYNSLQTKLRLIKREPFVAPAGLTPNEIDSTWSALEKAEQEHAE 872

Query: 472  KLEAMKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREE 531
             L        +++VL  K    L     +KLE    T  + L   +       +  K + 
Sbjct: 873  ALRIELKRQKKIAVLLQKYNRIL-----KKLENWATTKSVYLGSNETGDSITAVQAKLKN 927

Query: 532  LRKEAERVAVERVVVSKSLKDERDSLRQERDAMRDQHKRDVDSLNREREEFMNKMVHEHS 591
            L                         +             +  L       + ++     
Sbjct: 928  LEAFDGE------------------CQSLEGQSNSDLLSILAQLTELNYNGVPEL----- 964

Query: 592  EWFTKIQQERADFLLGIEMQKRDLENCIEKRREELESSFREREKAFEEEKMREFQQ 647
                   + +  F      Q   +++  E  +  L  +  ER +  E+        
Sbjct: 965  ------TERKDTFF---AQQWTGVKSSAETYKNTLL-AELERLQKIEDLHHHHHHH 1010

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* 3vkh_C* Length = 3245

 Score = 46.0 bits (109), Expect = 8e-05
 Identities = 35/195 (17%), Positives = 88/195 (45%), Gaps = 6/195 (3%)

Query: 382  LGQREESLLEREHDLEVQSRALVDKEKDLVERSHLLEEKENKLIAFEKEADLKKSLLQKE 441
            + ++ + L E +  L +  + L D E  + +    L +K  +L    ++A+ K   + ++
Sbjct: 1908 INEKRDQLEEEQLHLNIGLKKLRDTEAQVKDLQVSLAQKNRELDVKNEQANQKLKQMVQD 1967

Query: 442  KEEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEAMKSEAGELSVLEIKLKE---ELDVVR 498
            ++   I + D ++    LD + K++   K K  A   +A     L  ++++     + ++
Sbjct: 1968 QQAAEIKQKDARELQVQLDVRNKEIAVQKVKAYADLEKAEPTGPLREEVEQLENAANELK 2027

Query: 499  AQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVA--VERVVVS-KSLKDERD 555
             ++ E++     L+   A ++ E+  +  + E+++ E+ +V   V+R +    +L  ER 
Sbjct: 2028 LKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSKVKNKVDRSIALLDNLNSERG 2087

Query: 556  SLRQERDAMRDQHKR 570
               Q+ +    Q   
Sbjct: 2088 RWEQQSENFNTQMST 2102

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* 3vkh_C* Length = 3245

 Score = 44.9 bits (106), Expect = 2e-04
 Identities = 25/233 (10%), Positives = 78/233 (33%), Gaps = 29/233 (12%)

Query: 427  FEKEADLKKSLLQKEKEEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEAMKSEAGELSVL 486
            +    +    L+ ++++++   +  L   L  L + + QV       + ++    + +  
Sbjct: 1897 YLDFINQVVLLINEKRDQLEEEQLHLNIGLKKLRDTEAQV-------KDLQVSLAQKNRE 1949

Query: 487  EIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVERVVV 546
                 E+ +       + +    ++  ++   E + +   E + +L    + +AV++V  
Sbjct: 1950 LDVKNEQAN-------QKLK---QMVQDQQAAEIKQKDARELQVQLDVRNKEIAVQKVKA 1999

Query: 547  SKSLKDERDS--LRQERDAMRDQHKRDVDSLNREREEFMNKMVHEHSEWFTKIQQERADF 604
               L+    +  LR+E + + +         +                    I   + ++
Sbjct: 2000 YADLEKAEPTGPLREEVEQLENAANELKLKQDEIVATITALE--------KSIATYKEEY 2051

Query: 605  LLGIEMQKRDLENCIEKRREELESSFREREKAFEEEKMREFQQISSLKEKAEK 657
               I      ++    K + +++ S    +     E+ R  QQ  +   +   
Sbjct: 2052 ATLIRE-TEQIKTESSKVKNKVDRSIALLD-NLNSERGRWEQQSENFNTQMST 2102

>1sjj_A Actinin; 3-helix bundle, calponin homology domain, calmodulin-like domain, actin binding protein, contractIle protein; 20.00A {Gallus gallus} SCOP: i.15.1.1 Length = 863

 Score = 43.0 bits (100), Expect = 5e-04
 Identities = 66/492 (13%), Positives = 151/492 (30%), Gaps = 42/492 (8%)

Query: 184 NRYHRSAERKLQEVVAREDDLSRRIASFKADCEEKEREIIRERQSLSDRKKILQQEHERL 243
             Y + A   L+ +      L  R  + +   +  ++++   R      K    QE  +L
Sbjct: 253 EDYEKLASDLLEWIRRTIPWLENR--APENTMQAMQQKLEDFRDYRRLHKPPKVQEKCQL 310

Query: 244 ------LDAQTLLNEREDHILSKLQELSRKEKELEASRANVEEKFKALNEEKSNLDLTLV 297
                 L  +  L+ R   + S+ + +S             +   + L  E   L+    
Sbjct: 311 EINFNTLQTKLRLSNRPAFMPSEGKMVSDINNAWGGLEQAEKGYEEWLLNEIRRLERLDH 370

Query: 298 SLLKREEAVIEREASLQKKEQKLLVSQETLASKESNEIQKIIANHESA---LRVKQSEFE 354
              K  +     E+    KE  L   Q+   +   +EI+ ++  HE+    L   Q   E
Sbjct: 371 LAEKFRQKASIHESWTDGKEAML--QQKDYETATLSEIKALLKKHEAFESDLAAHQDRVE 428

Query: 355 AELAIKYKLAEDEIEKKRRAWELRDLDLGQREESLLEREHDLEVQSRALVDKEKDLVERS 414
              AI  +L E +          R   +  + ++L                  + + +  
Sbjct: 429 QIAAIAQELNELDYYDSPSV-NARCQKICDQWDNLGALTQKRREALERTEKLLETIDQLY 487

Query: 415 HLLEEKENKLIAF--EKEADLKKSLLQKEKEEVNIIKSDLQKSLSSLDEKKKQVNCAKDK 472
               ++      +      DL+ + +    EE+  + +  ++  ++L +  K+       
Sbjct: 488 LEYAKRAAPFNNWMEGAMEDLQDTFIVHTIEEIQGLTTAHEQFKATLPDADKERQAILGI 547

Query: 473 LEAMKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREEL 532
              +        V          +   +         +L   + +   E     ++ E L
Sbjct: 548 HNEVSKIVQTYHVNMAGTNPYTTITPQEINGKWEHVRQLVPRRDQALMEEHARQQQNERL 607

Query: 533 RKEAERVAVE--------RVVVSKSLKDERDSLRQERDAMRD------QHKRDVDSLNRE 578
           RK+    A             + +   +   +L  + + +R        +K  +D L  +
Sbjct: 608 RKQFGAQANVIGPWIQTKMEEIGRISIEMHGTLEDQLNHLRQYEKSIVNYKPKIDQLEGD 667

Query: 579 REEFMNKMVHEH---SEWFTKIQQERADFLLGIEMQKRDLENCIEKRR---------EEL 626
            ++    ++ ++   +     I+      L  I     ++EN I  R           E 
Sbjct: 668 HQQIQEALIFDNKHTNYTMEHIRVGWEQLLTTIARTINEVENQILTRDAKGISQEQMNEF 727

Query: 627 ESSFREREKAFE 638
            +SF   ++   
Sbjct: 728 RASFNHFDRKKT 739

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00